Query 018368
Match_columns 357
No_of_seqs 120 out of 131
Neff 3.2
Searched_HMMs 13730
Date Mon Mar 25 14:10:15 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018368.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/018368hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1sgla_ d.124.1.1 (A:) Trichom 30.8 10 0.00074 31.2 2.0 10 341-350 95-104 (206)
2 d1iyba_ d.124.1.1 (A:) RNase N 27.5 13 0.00093 30.5 2.1 29 322-350 70-103 (208)
3 d1v6ga1 g.39.1.3 (A:1-41) Acti 17.8 16 0.0012 24.3 0.6 14 342-355 8-26 (41)
4 d1s4va_ d.3.1.1 (A:) Vignain ( 15.9 23 0.0017 27.7 1.2 26 280-305 188-223 (224)
5 d1x6aa1 g.39.1.3 (A:8-41) Lim 15.6 11 0.00083 24.3 -0.6 9 342-350 1-9 (34)
6 g8pch.1 d.3.1.1 (P:,A:) Cathep 15.5 20 0.0015 28.3 0.8 24 280-303 199-228 (228)
7 d1wgra_ d.15.1.5 (A:) Growth f 13.2 17 0.0013 26.8 -0.3 22 334-355 68-89 (100)
8 d1ucda_ d.124.1.1 (A:) Ribonuc 12.9 22 0.0016 28.7 0.2 27 324-350 61-90 (190)
9 d1iooa_ d.124.1.1 (A:) Gemetop 12.6 38 0.0028 27.2 1.7 28 323-350 58-93 (196)
10 d1bola_ d.124.1.1 (A:) Ribonuc 12.4 23 0.0017 29.2 0.2 10 342-351 103-112 (222)
No 1
>d1sgla_ d.124.1.1 (A:) Trichomaglin {Gourd (Trichosanthes lepiniana) [TaxId: 282652]}
Probab=30.79 E-value=10 Score=31.17 Aligned_cols=10 Identities=40% Similarity=0.757 Sum_probs=8.1
Q ss_pred chhhhhhcCC
Q 018368 341 LKDHWAKHGT 350 (357)
Q Consensus 341 lk~~wa~hgt 350 (357)
.+.-|.||||
T Consensus 95 w~hEW~KHGT 104 (206)
T d1sgla_ 95 WGQQYEKHGT 104 (206)
T ss_dssp HHHHHHHTGG
T ss_pred HHHHHHhccc
Confidence 3567999998
No 2
>d1iyba_ d.124.1.1 (A:) RNase NW {Nicotiana glutinosa [TaxId: 35889]}
Probab=27.52 E-value=13 Score=30.49 Aligned_cols=29 Identities=31% Similarity=0.627 Sum_probs=18.7
Q ss_pred HHHHHHHhhcccCCCCC----ccch-hhhhhcCC
Q 018368 322 NKLLTRLAAEGHDLSHP----VDLK-DHWAKHGT 350 (357)
Q Consensus 322 ~kll~~l~~eg~~~s~p----~dlk-~~wa~hgt 350 (357)
..||.+|...=-+|-.| .+|= --|.||||
T Consensus 70 ~~l~~~l~~~Wp~l~~~~~~~~~~w~hEW~KHGt 103 (208)
T d1iyba_ 70 SDLISRMQQNWPTLACPSGTGSAFWSHEWEKHGT 103 (208)
T ss_dssp GGGHHHHHHHSCCCCSSCCCSHHHHHHHHHHTGG
T ss_pred HHHHHHHHHHHHHhhcccCccHHHHHHhccccee
Confidence 45777777655555433 3454 44999998
No 3
>d1v6ga1 g.39.1.3 (A:1-41) Actin-binding LIM protein 2, abLIM2 {Human (Homo sapiens) [TaxId: 9606]}
Probab=17.80 E-value=16 Score=24.33 Aligned_cols=14 Identities=29% Similarity=0.349 Sum_probs=11.1
Q ss_pred hhhhhhcCC-----cceee
Q 018368 342 KDHWAKHGT-----NRYIT 355 (357)
Q Consensus 342 k~~wa~hgt-----n~~~t 355 (357)
+|||++.|| +.|||
T Consensus 8 ~DYq~~fG~~C~~C~~~It 26 (41)
T d1v6ga1 8 LDYQRLYGTRCFSCDQFIE 26 (41)
T ss_dssp SCGGGSCCCBCTTTCCBCC
T ss_pred ccHHHHhCcccccccCEee
Confidence 689999987 66765
No 4
>d1s4va_ d.3.1.1 (A:) Vignain (bean endopeptidase) {Castor bean (Ricinus communis) [TaxId: 3988]}
Probab=15.92 E-value=23 Score=27.73 Aligned_cols=26 Identities=27% Similarity=0.754 Sum_probs=18.7
Q ss_pred eccCCcc----------cccccccccccccCCCCCC
Q 018368 280 KWGNGGW----------QSACCTTSLSMYPLPAVPN 305 (357)
Q Consensus 280 ~wg~ggw----------qs~cctt~~s~yplp~~~~ 305 (357)
.||.+|+ ...|=-.+...||+|-+|+
T Consensus 188 ~WG~~Gy~~i~~g~~~~~n~CgI~~~~~yp~~~~~~ 223 (224)
T d1s4va_ 188 EWGEKGYIRMERGISDKEGLCGIAMEASYPIKKSSN 223 (224)
T ss_dssp TSTBTTEEEEECSCSSTTCGGGTTSSCEEEECCSSC
T ss_pred ccccCceEEEECCCCCCCCcCCccceeeeeeccCCC
Confidence 5888887 2334355678899999886
No 5
>d1x6aa1 g.39.1.3 (A:8-41) Lim domain kinase 2 {Human (Homo sapiens) [TaxId: 9606]}
Probab=15.61 E-value=11 Score=24.30 Aligned_cols=9 Identities=56% Similarity=1.110 Sum_probs=7.1
Q ss_pred hhhhhhcCC
Q 018368 342 KDHWAKHGT 350 (357)
Q Consensus 342 k~~wa~hgt 350 (357)
||||+|-|-
T Consensus 1 kdYw~kfge 9 (34)
T d1x6aa1 1 KDYWGKFGE 9 (34)
T ss_dssp CCSSCCSSC
T ss_pred CcHHHHHHH
Confidence 789999763
No 6
>g8pch.1 d.3.1.1 (P:,A:) Cathepsin H {Pig (Sus scrofa) [TaxId: 9823]}
Probab=15.47 E-value=20 Score=28.34 Aligned_cols=24 Identities=33% Similarity=0.958 Sum_probs=18.3
Q ss_pred eccCCcc------cccccccccccccCCCC
Q 018368 280 KWGNGGW------QSACCTTSLSMYPLPAV 303 (357)
Q Consensus 280 ~wg~ggw------qs~cctt~~s~yplp~~ 303 (357)
.||.+|+ .-.|.-.+-..||+|+.
T Consensus 199 ~WG~~Gy~~i~~g~n~cgi~~~~~~p~~~~ 228 (228)
T g8pch.1 199 QWGMNGYFLIERGKNMCGLAACASYPIPLV 228 (228)
T ss_dssp TSTBTTEEEEECSSCGGGTTTSCEEEEECC
T ss_pred CcccCCEEEEEcCCCcccCcccceeccccC
Confidence 5888875 24577788889999984
No 7
>d1wgra_ d.15.1.5 (A:) Growth factor receptor-bound protein 7, GRB-7 {Human (Homo sapiens) [TaxId: 9606]}
Probab=13.18 E-value=17 Score=26.77 Aligned_cols=22 Identities=23% Similarity=0.590 Sum_probs=18.9
Q ss_pred CCCCCccchhhhhhcCCcceee
Q 018368 334 DLSHPVDLKDHWAKHGTNRYIT 355 (357)
Q Consensus 334 ~~s~p~dlk~~wa~hgtn~~~t 355 (357)
|-..|+|+...|.++.+||||-
T Consensus 68 d~E~vl~v~~~W~~~~~~r~v~ 89 (100)
T d1wgra_ 68 DHESVVEVQAAWPVGGDSRFVF 89 (100)
T ss_dssp SSSCHHHHHTTSCSSSCCEEEE
T ss_pred chHhHHHHHHcCCCCCCCEEEE
Confidence 4556999999999999999984
No 8
>d1ucda_ d.124.1.1 (A:) Ribonuclease MC1 {Bitter gourd (Momordica charantia) [TaxId: 3673]}
Probab=12.88 E-value=22 Score=28.67 Aligned_cols=27 Identities=26% Similarity=0.480 Sum_probs=15.4
Q ss_pred HHHHHhhcccCCCC--Cccc-hhhhhhcCC
Q 018368 324 LLTRLAAEGHDLSH--PVDL-KDHWAKHGT 350 (357)
Q Consensus 324 ll~~l~~eg~~~s~--p~dl-k~~wa~hgt 350 (357)
|+.+|...=-||.. ..+| +.-|.||||
T Consensus 61 l~~~L~~~wp~l~~~~~~~~w~hEW~KHGt 90 (190)
T d1ucda_ 61 LQSQLNTLWPNVLRANNQQFWSHEWTKHGT 90 (190)
T ss_dssp GHHHHHHHSCCSSSSCHHHHHHHHHHHTGG
T ss_pred HHHHHHHHhhhhccccChHHHHHHHHhCcc
Confidence 55566544334432 2344 455999998
No 9
>d1iooa_ d.124.1.1 (A:) Gemetophytic self-incompatibility associated SF11-RNase {Winged tobacco (Nicotiana alata) [TaxId: 4087]}
Probab=12.62 E-value=38 Score=27.24 Aligned_cols=28 Identities=32% Similarity=0.458 Sum_probs=18.8
Q ss_pred HHHHHHhhcccCCCCCccc--------hhhhhhcCC
Q 018368 323 KLLTRLAAEGHDLSHPVDL--------KDHWAKHGT 350 (357)
Q Consensus 323 kll~~l~~eg~~~s~p~dl--------k~~wa~hgt 350 (357)
.++..|-.+=.+|..|.+. +.-|.||||
T Consensus 58 ~~~~~l~~~wp~l~~~~~~~~~~~~fW~hEW~KHGT 93 (196)
T d1iooa_ 58 KMLNDLDKHWMQLKFEQDYGRTEQPSWKYQYIKHGS 93 (196)
T ss_dssp HHHHHHHHHTCCTTSCHHHHHHHCHHHHHHHHHTGG
T ss_pred hhhhHHHHhhhhhccccccCCccchhHHhhhhhccc
Confidence 3566666666677766542 456889998
No 10
>d1bola_ d.124.1.1 (A:) Ribonuclease Rh {Rhizopus niveus [TaxId: 4844]}
Probab=12.39 E-value=23 Score=29.21 Aligned_cols=10 Identities=50% Similarity=1.089 Sum_probs=7.8
Q ss_pred hhhhhhcCCc
Q 018368 342 KDHWAKHGTN 351 (357)
Q Consensus 342 k~~wa~hgtn 351 (357)
+.-|.||||=
T Consensus 103 ~hEW~KHGTC 112 (222)
T d1bola_ 103 SHEWSKHGTC 112 (222)
T ss_dssp HHHHHHTGGG
T ss_pred HHHHHhcccc
Confidence 3459999995
Done!