BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 018369
(357 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1GP5|A Chain A, Anthocyanidin Synthase From Arabidopsis Thaliana Complexed
With Trans-Dihydroquercetin
pdb|1GP6|A Chain A, Anthocyanidin Synthase From Arabidopsis Thaliana Complexed
With Trans-Dihydroquercetin (With 30 Min Exposure To O2)
Length = 356
Score = 537 bits (1384), Expect = e-153, Method: Compositional matrix adjust.
Identities = 256/351 (72%), Positives = 290/351 (82%)
Query: 5 TARRVESLARSGIQAIPKEYVRPKEELMSIGNIFEEEEKDEGPQVPTIDLKEIDSEDRVE 64
RVESLA+SGI +IPKEY+RPKEEL SI ++F EE+K++GPQVPTIDLK I+S+D
Sbjct: 3 AVERVESLAKSGIISIPKEYIRPKEELESINDVFLEEKKEDGPQVPTIDLKNIESDDEKI 62
Query: 65 REKCREELKKAAMDWGVMHLVNHGISDDLTERVKRAGQAFFDQPVEEKEKYANEQASGKI 124
RE C EELKKA++DWGVMHL+NHGI DL ERVK+AG+ FF VEEKEKYAN+QA+GKI
Sbjct: 63 RENCIEELKKASLDWGVMHLINHGIPADLMERVKKAGEEFFSLSVEEKEKYANDQATGKI 122
Query: 125 QGYGSKLANNASGQLEWEDYFFHLIYPEDKRDMSIWPKTPSDYTEATSEYARQLRSLATK 184
QGYGSKLANNASGQLEWEDYFFHL YPE+KRD+SIWPKTPSDY EATSEYA+ LR LATK
Sbjct: 123 QGYGSKLANNASGQLEWEDYFFHLAYPEEKRDLSIWPKTPSDYIEATSEYAKCLRLLATK 182
Query: 185 IXXXXXXXXXXXXXXXXXXXXXXXXXXXQMKINYYPKCPQPELALGVEAHTDVSALTFIL 244
+ QMKINYYPKCPQPELALGVEAHTDVSALTFIL
Sbjct: 183 VFKALSVGLGLEPDRLEKEVGGLEELLLQMKINYYPKCPQPELALGVEAHTDVSALTFIL 242
Query: 245 HNMVPGLQLFYKDKWVTAKCVPNSIILHIGDTIEILSNGEYKSILHRGLVNKEKVRISWA 304
HNMVPGLQLFY+ KWVTAKCVP+SI++HIGDT+EILSNG+YKSILHRGLVNKEKVRISWA
Sbjct: 243 HNMVPGLQLFYEGKWVTAKCVPDSIVMHIGDTLEILSNGKYKSILHRGLVNKEKVRISWA 302
Query: 305 VFCEPPRDKIILKPLPETVSEQKPAMLPPRTFQQHIEHKLFRRAQDALLSD 355
VFCEPP+DKI+LKPLPE VS + PA PPRTF QHIEHKLF + Q+ L+S+
Sbjct: 303 VFCEPPKDKIVLKPLPEMVSVESPAKFPPRTFAQHIEHKLFGKEQEELVSE 353
>pdb|2BRT|A Chain A, Anthocyanidin Synthase From Arabidopsis Thaliana Complexed
With Naringenin
Length = 355
Score = 537 bits (1383), Expect = e-153, Method: Compositional matrix adjust.
Identities = 256/351 (72%), Positives = 290/351 (82%)
Query: 5 TARRVESLARSGIQAIPKEYVRPKEELMSIGNIFEEEEKDEGPQVPTIDLKEIDSEDRVE 64
RVESLA+SGI +IPKEY+RPKEEL SI ++F EE+K++GPQVPTIDLK I+S+D
Sbjct: 2 AVERVESLAKSGIISIPKEYIRPKEELESINDVFLEEKKEDGPQVPTIDLKNIESDDEKI 61
Query: 65 REKCREELKKAAMDWGVMHLVNHGISDDLTERVKRAGQAFFDQPVEEKEKYANEQASGKI 124
RE C EELKKA++DWGVMHL+NHGI DL ERVK+AG+ FF VEEKEKYAN+QA+GKI
Sbjct: 62 RENCIEELKKASLDWGVMHLINHGIPADLMERVKKAGEEFFSLSVEEKEKYANDQATGKI 121
Query: 125 QGYGSKLANNASGQLEWEDYFFHLIYPEDKRDMSIWPKTPSDYTEATSEYARQLRSLATK 184
QGYGSKLANNASGQLEWEDYFFHL YPE+KRD+SIWPKTPSDY EATSEYA+ LR LATK
Sbjct: 122 QGYGSKLANNASGQLEWEDYFFHLAYPEEKRDLSIWPKTPSDYIEATSEYAKCLRLLATK 181
Query: 185 IXXXXXXXXXXXXXXXXXXXXXXXXXXXQMKINYYPKCPQPELALGVEAHTDVSALTFIL 244
+ QMKINYYPKCPQPELALGVEAHTDVSALTFIL
Sbjct: 182 VFKALSVGLGLEPDRLEKEVGGLEELLLQMKINYYPKCPQPELALGVEAHTDVSALTFIL 241
Query: 245 HNMVPGLQLFYKDKWVTAKCVPNSIILHIGDTIEILSNGEYKSILHRGLVNKEKVRISWA 304
HNMVPGLQLFY+ KWVTAKCVP+SI++HIGDT+EILSNG+YKSILHRGLVNKEKVRISWA
Sbjct: 242 HNMVPGLQLFYEGKWVTAKCVPDSIVMHIGDTLEILSNGKYKSILHRGLVNKEKVRISWA 301
Query: 305 VFCEPPRDKIILKPLPETVSEQKPAMLPPRTFQQHIEHKLFRRAQDALLSD 355
VFCEPP+DKI+LKPLPE VS + PA PPRTF QHIEHKLF + Q+ L+S+
Sbjct: 302 VFCEPPKDKIVLKPLPEMVSVESPAKFPPRTFAQHIEHKLFGKEQEELVSE 352
>pdb|1GP4|A Chain A, Anthocyanidin Synthase From Arabidopsis Thaliana
(Selenomethionine Substituted)
Length = 356
Score = 527 bits (1357), Expect = e-150, Method: Compositional matrix adjust.
Identities = 253/351 (72%), Positives = 286/351 (81%)
Query: 5 TARRVESLARSGIQAIPKEYVRPKEELMSIGNIFEEEEKDEGPQVPTIDLKEIDSEDRVE 64
RVESLA+SGI +IPKEY+RPKEEL SI ++F EE+K++GPQVPTIDLK I+S+D
Sbjct: 3 AVERVESLAKSGIISIPKEYIRPKEELESINDVFLEEKKEDGPQVPTIDLKNIESDDEKI 62
Query: 65 REKCREELKKAAMDWGVMHLVNHGISDDLTERVKRAGQAFFDQPVEEKEKYANEQASGKI 124
RE C EELKKA++DWGV HL+NHGI DL ERVK+AG+ FF VEEKEKYAN+QA+GKI
Sbjct: 63 RENCIEELKKASLDWGVXHLINHGIPADLXERVKKAGEEFFSLSVEEKEKYANDQATGKI 122
Query: 125 QGYGSKLANNASGQLEWEDYFFHLIYPEDKRDMSIWPKTPSDYTEATSEYARQLRSLATK 184
QGYGSKLANNASGQLEWEDYFFHL YPE+KRD+SIWPKTPSDY EATSEYA+ LR LATK
Sbjct: 123 QGYGSKLANNASGQLEWEDYFFHLAYPEEKRDLSIWPKTPSDYIEATSEYAKCLRLLATK 182
Query: 185 IXXXXXXXXXXXXXXXXXXXXXXXXXXXQMKINYYPKCPQPELALGVEAHTDVSALTFIL 244
+ Q KINYYPKCPQPELALGVEAHTDVSALTFIL
Sbjct: 183 VFKALSVGLGLEPDRLEKEVGGLEELLLQXKINYYPKCPQPELALGVEAHTDVSALTFIL 242
Query: 245 HNMVPGLQLFYKDKWVTAKCVPNSIILHIGDTIEILSNGEYKSILHRGLVNKEKVRISWA 304
HN VPGLQLFY+ KWVTAKCVP+SI+ HIGDT+EILSNG+YKSILHRGLVNKEKVRISWA
Sbjct: 243 HNXVPGLQLFYEGKWVTAKCVPDSIVXHIGDTLEILSNGKYKSILHRGLVNKEKVRISWA 302
Query: 305 VFCEPPRDKIILKPLPETVSEQKPAMLPPRTFQQHIEHKLFRRAQDALLSD 355
VFCEPP+DKI+LKPLPE VS + PA PPRTF QHIEHKLF + Q+ L+S+
Sbjct: 303 VFCEPPKDKIVLKPLPEXVSVESPAKFPPRTFAQHIEHKLFGKEQEELVSE 353
>pdb|1W9Y|A Chain A, The Structure Of Acc Oxidase
pdb|1WA6|X Chain X, The Structure Of Acc Oxidase
Length = 319
Score = 123 bits (308), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 79/294 (26%), Positives = 139/294 (47%), Gaps = 17/294 (5%)
Query: 50 PTIDLKEIDSEDRVEREKCREELKKAAMDWGVMHLVNHGISDDLTERVKRAGQAFFDQPV 109
P I L +++ VER E +K A +WG LVNHGI ++ + V++ + + +
Sbjct: 5 PIISLDKVNG---VERAATXEXIKDACENWGFFELVNHGIPREVXDTVEKXTKGHYKKCX 61
Query: 110 EEKEKYANEQASGKIQGYGSKLANNASGQLEWEDYFFHLIYPEDKRDMSIWPKTPSDYTE 169
E++ + AS ++G +++ + +WE FF P ++S P +Y E
Sbjct: 62 EQR--FKELVASKALEGVQAEVTDX-----DWESTFFLKHLP--ISNISEVPDLDEEYRE 112
Query: 170 ATSEYARQLRSLATKIXXXXXXXXXXXXXXXXXXXXXXXXXXXQMKINYYPKCPQPELAL 229
++A++L LA ++ K++ YP CP+P+L
Sbjct: 113 VXRDFAKRLEKLAEELLDLLCENLGLEKGYLKNAFYGSKGPNFGTKVSNYPPCPKPDLIK 172
Query: 230 GVEAHTDVSALTFILHN-MVPGLQLFYKDKWVTAKCVPNSIILHIGDTIEILSNGEYKSI 288
G+ AHTD + + + V GLQL +W+ +SI++++GD +E+++NG+YKS+
Sbjct: 173 GLRAHTDAGGIILLFQDDKVSGLQLLKDGQWIDVPPXRHSIVVNLGDQLEVITNGKYKSV 232
Query: 289 LHRGLVNKEKVRISWAVFCEPPRDKIILKPLPETV---SEQKPAMLPPRTFQQH 339
HR + K+ R S A F P D +I P P V +E+ + P F +
Sbjct: 233 XHRVIAQKDGARXSLASFYNPGSDAVIY-PAPALVEKEAEENKQVYPKFVFDDY 285
>pdb|3ON7|A Chain A, Crystal Structure Of A Putative Oxygenase (So_2589) From
Shewanella Oneidensis At 2.20 A Resolution
pdb|3ON7|B Chain B, Crystal Structure Of A Putative Oxygenase (So_2589) From
Shewanella Oneidensis At 2.20 A Resolution
pdb|3ON7|C Chain C, Crystal Structure Of A Putative Oxygenase (So_2589) From
Shewanella Oneidensis At 2.20 A Resolution
pdb|3ON7|D Chain D, Crystal Structure Of A Putative Oxygenase (So_2589) From
Shewanella Oneidensis At 2.20 A Resolution
Length = 280
Score = 60.8 bits (146), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 68/274 (24%), Positives = 112/274 (40%), Gaps = 30/274 (10%)
Query: 46 GPQVPTIDLKEIDSEDRVEREKCREELKKAAMDWGVMHLVNHGISDDLTERVKRAGQAFF 105
G ++ TID + DS R E RE +GV L NH I +L ER+ QAFF
Sbjct: 1 GXKLETIDYRAADSAKRF-VESLRE------TGFGV--LSNHPIDKELVERIYTEWQAFF 51
Query: 106 DQPVEEKEKYANEQASGKIQGYGSKLANNASGQLEWEDYFFHLIYPEDKRDMSIWPKTPS 165
+ + + + E G + + ++ A G + ++ +YP W + P
Sbjct: 52 NSEAKNEFXFNRETHDGF---FPASISETAKGHTVKDIKEYYHVYP--------WGRIPD 100
Query: 166 DYTEATSEYARQLRSLATKIXXXXXXXXXXXXXXXXXXXXXXXXXXXQ---MKINYYPKC 222
Y + +LA+++ ++I +YP
Sbjct: 101 SLRANILAYYEKANTLASELLEWIETYSPDEIKAKFSIPLPEXIANSHKTLLRILHYPPX 160
Query: 223 PQPE--LALGVEAHTDVSALTFILHNMVPGLQLFYKD-KWVTAKCVPNSIILHIGDTIEI 279
E A+ AH D++ +T + PGLQ+ KD W+ +II++IGD ++
Sbjct: 161 TGDEEXGAIRAAAHEDINLITVLPTANEPGLQVKAKDGSWLDVPSDFGNIIINIGDXLQE 220
Query: 280 LSNGEYKSILHRGL----VNKEKVRISWAVFCEP 309
S+G + S HR + +K K RIS +F P
Sbjct: 221 ASDGYFPSTSHRVINPEGTDKTKSRISLPLFLHP 254
>pdb|3OOX|A Chain A, Crystal Structure Of A Putative 2og-Fe(Ii) Oxygenase
Family Protein (Cc_0200) From Caulobacter Crescentus At
1.44 A Resolution
pdb|3OOX|B Chain B, Crystal Structure Of A Putative 2og-Fe(Ii) Oxygenase
Family Protein (Cc_0200) From Caulobacter Crescentus At
1.44 A Resolution
Length = 312
Score = 52.0 bits (123), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 49/239 (20%), Positives = 92/239 (38%), Gaps = 24/239 (10%)
Query: 67 KCREELKKAAMDWGVMHLVNHGISDDLTERVKRAGQAFFDQPVEEKEKYANEQASGKIQG 126
+ +EL + +G L ++ + + + +AFF PVE K++YA G +G
Sbjct: 21 RFAQELGASFERYGFAVLSDYDLDQARIDAAVDSAKAFFALPVETKKQYAG--VKGGARG 78
Query: 127 YGSKLANNASGQLEWE-DYFFHLIYPEDKRDM------------SIWPKTPSDYTEATSE 173
Y A G ++ F+H RD+ ++WP + S
Sbjct: 79 YIPFGVETAKGADHYDLKEFWHX-----GRDLPPGHRFRAHXADNVWPAEIPAFKHDVSW 133
Query: 174 YARQLRSLATKIXXXXXXXXXXXXXXXXXXXXXXXXXXXQMKINYYPKCPQPELALGVEA 233
L K+ +++ +YP P+ + A
Sbjct: 134 LYNSLDGXGGKVLEAIATYLKLERDFFKPTVQDGNSV---LRLLHYPPIPKDATGVRAGA 190
Query: 234 HTDVSALTFILHNMVPGLQLFYKD-KWVTAKCVPNSIILHIGDTIEILSNGEYKSILHR 291
H D++ +T +L GL++ +D +W+ P ++++IGD +E L+N S +HR
Sbjct: 191 HGDINTITLLLGAEEGGLEVLDRDGQWLPINPPPGCLVINIGDXLERLTNNVLPSTVHR 249
>pdb|2BJS|A Chain A, Isopenicillin N Synthase C-Terminal Truncation Mutant
Length = 325
Score = 41.6 bits (96), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 62/296 (20%), Positives = 114/296 (38%), Gaps = 37/296 (12%)
Query: 48 QVPTIDLKEIDSEDRVEREKCREELKKAAMDWGVMHLVNHGIS-DDLTERVKRAGQAFFD 106
VP ID+ + +D+ + + +++ A+ D G + VNHGI+ L+++ K F
Sbjct: 8 NVPKIDVSPLFGDDQAAKMRVAQQIDAASRDTGFFYAVNHGINVQRLSQKTKE-----FH 62
Query: 107 QPVEEKEKY------ANEQASGKIQGYGSKLANNASGQLEWEDYFFHLIYPEDKR----- 155
+ +EK+ N++ +++ G L+ +E Y P+ R
Sbjct: 63 MSITPEEKWDLAIRAYNKEHQDQVRA-GYYLSIPGKKAVESFCYLNPNFTPDHPRIQAKT 121
Query: 156 ---DMSIWP---KTPSDYTEATSEYARQLRSLATKIXXXXXXXXXXXXXXXXXXXXXXXX 209
++++WP K P + + +Y + L++ +
Sbjct: 122 PTHEVNVWPDETKHPG-FQDFAEQYYWDVFGLSSALLKGYALALGKEENFFARHFKPDDT 180
Query: 210 XXXQMKINYYPKCPQPELA---------LGVEAHTDVSALTFILHNMVPGLQLFYKDKWV 260
+ I Y P PE A L E H DVS +T + + V LQ+ +
Sbjct: 181 LASVVLIRYPYLDPYPEAAIKTAADGTKLSFEWHEDVSLITVLYQSNVQNLQVETAAGYQ 240
Query: 261 TAKCVPNSIILHIGDTIEILSNGEYKSILHR-GLVNKEKVRISWAVFCEPPRDKII 315
+ +++ G + L+N YK+ +HR VN E R S F D +I
Sbjct: 241 DIEADDTGYLINCGSYMAHLTNNYYKAPIHRVKWVNAE--RQSLPFFVNLGYDSVI 294
>pdb|1IPS|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(Manganese Complex)
pdb|1IPS|B Chain B, Isopenicillin N Synthase From Aspergillus Nidulans
(Manganese Complex)
pdb|1QJE|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans (Ip1 -
Fe Complex)
pdb|1QJF|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(Monocyclic Sulfoxide - Fe Complex)
pdb|1QIQ|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans (Acmc
Fe Complex)
pdb|1HB4|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans (Oxygen
Exposed Product From Anaerobic Acov Fe Complex)
pdb|1HB3|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans (Oxygen
Exposed Product From Anaerobic Acov Fe Complex)
pdb|1HB2|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans (Oxygen
Exposed Product From Anaerobic Acov Fe Complex)
pdb|1HB1|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(Anaerobic Acov Fe Complex)
pdb|1ODM|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(anaerobic Ac-vinylglycine Fe Complex)
pdb|1ODN|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(Oxygen-Exposed Product From Anaerobic Ac-Vinylglycine
Fe Complex)
pdb|1OBN|A Chain A, Isopenicillin N Synthase
Aminoadipoyl-cysteinyl-aminobutyrate-fe-no Complex
pdb|1OC1|A Chain A, Isopenicillin N Synthase
Aminoadipoyl-cysteinyl-aminobutyrate-fe Complex
pdb|1UZW|A Chain A, Isopenicillin N Synthase With
L-D-(A-Aminoadipoyl)-L-Cysteinyl-D-Isodehydrovaline
pdb|1W03|A Chain A, Isopenicillin N Synthase Aminoadipoyl-Cysteinyl-Glycine-Fe
Complex
pdb|1W04|A Chain A, Isopenicillin N Synthase
Aminoadipoyl-Cysteinyl-Glycine-Fe-No Complex
pdb|1W05|A Chain A, Isopenicillin N Synthase Aminoadipoyl-Cysteinyl-Alanine-Fe
Complex
pdb|1W06|A Chain A, Isopenicillin N Synthase Aminoadipoyl-Cysteinyl-Alanine-Fe
No Complex
pdb|2BU9|A Chain A, Isopenicillin N Synthase Complexed With L-Aminoadipoyl-L-
Cysteinyl-L-Hexafluorovaline
pdb|1W3V|A Chain A, Isopenicillin N Synthase
D-(L-A-Aminoadipoyl)-(3r)-Methyl-L- Cysteine
D-A-Hydroxyisovaleryl Ester Complex (Anaerobic)
pdb|1W3X|A Chain A, Isopenicillin N Synthase
D-(L-A-Aminoadipoyl)-(3r)-Methyl-L- Cysteine
D-A-Hydroxyisovaleryl Ester Complex (Oxygen Exposed 5
Minutes 20 Bar)
pdb|2IVI|B Chain B, Isopenicillin N Synthase From Aspergillus Nidulans
(anaerobic Ac-methyl-cyclopropylglycine Fe Complex)
pdb|2IVJ|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(Anaerobic Ac-Cyclopropylglycine Fe Complex)
pdb|1BK0|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans (Acv-Fe
Complex)
pdb|1BLZ|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(Acv-Fe- No Complex)
pdb|2JB4|A Chain A, Isopenicillin N Synthase With A 2-Thiabicycloheptan-6-One
Product Analogue
pdb|2VAU|A Chain A, Isopenicillin N Synthase With Substrate Analogue Acomp (
Unexposed)
pdb|2VBB|A Chain A, Isopenicillin N Synthase With Substrate Analogue Acomp (
35minutes Oxygen Exposure)
pdb|2VBD|A Chain A, Isopenicillin N Synthase With Substrate Analogue L,l,l-
Acomp (unexposed)
pdb|2VBP|A Chain A, Isopenicillin N Synthase With Substrate Analogue
L,L,L-Acab (Unexposed)
pdb|2VCM|A Chain A, Isopenicillin N Synthase With Substrate Analogue Asmcov
pdb|2VE1|A Chain A, Isopenicillin N Synthase With Substrate Analogue Asmcov (
Oxygen Exposed 1min 20bar)
pdb|2WO7|A Chain A, Isopenicillin N Synthase With Substrate Analogue L,L,D-
Acd2ab (Unexposed)
pdb|2Y6F|A Chain A, Isopenicillin N Synthase With
Ac-D-S-Methyl-3r-Methylcysteine
pdb|2Y60|A Chain A, Isopenicillin N Synthase With Ac-D-Methionine
pdb|2Y86|A Chain A, Isopenicillin N Synthase With Ac-O-Methyl-D-Threonine
pdb|3ZKU|A Chain A, Isopenicillin N Synthase With Substrate Analogue Ahcv
Length = 331
Score = 41.2 bits (95), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 62/296 (20%), Positives = 114/296 (38%), Gaps = 37/296 (12%)
Query: 48 QVPTIDLKEIDSEDRVEREKCREELKKAAMDWGVMHLVNHGIS-DDLTERVKRAGQAFFD 106
VP ID+ + +D+ + + +++ A+ D G + VNHGI+ L+++ K F
Sbjct: 8 NVPKIDVSPLFGDDQAAKMRVAQQIDAASRDTGFFYAVNHGINVQRLSQKTKE-----FH 62
Query: 107 QPVEEKEKY------ANEQASGKIQGYGSKLANNASGQLEWEDYFFHLIYPEDKR----- 155
+ +EK+ N++ +++ G L+ +E Y P+ R
Sbjct: 63 MSITPEEKWDLAIRAYNKEHQDQVRA-GYYLSIPGKKAVESFCYLNPNFTPDHPRIQAKT 121
Query: 156 ---DMSIWP---KTPSDYTEATSEYARQLRSLATKIXXXXXXXXXXXXXXXXXXXXXXXX 209
++++WP K P + + +Y + L++ +
Sbjct: 122 PTHEVNVWPDETKHPG-FQDFAEQYYWDVFGLSSALLKGYALALGKEENFFARHFKPDDT 180
Query: 210 XXXQMKINYYPKCPQPELA---------LGVEAHTDVSALTFILHNMVPGLQLFYKDKWV 260
+ I Y P PE A L E H DVS +T + + V LQ+ +
Sbjct: 181 LASVVLIRYPYLDPYPEAAIKTAADGTKLSFEWHEDVSLITVLYQSNVQNLQVETAAGYQ 240
Query: 261 TAKCVPNSIILHIGDTIEILSNGEYKSILHR-GLVNKEKVRISWAVFCEPPRDKII 315
+ +++ G + L+N YK+ +HR VN E R S F D +I
Sbjct: 241 DIEADDTGYLINCGSYMAHLTNNYYKAPIHRVKWVNAE--RQSLPFFVNLGYDSVI 294
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.133 0.393
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,202,211
Number of Sequences: 62578
Number of extensions: 407106
Number of successful extensions: 804
Number of sequences better than 100.0: 9
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 787
Number of HSP's gapped (non-prelim): 11
length of query: 357
length of database: 14,973,337
effective HSP length: 100
effective length of query: 257
effective length of database: 8,715,537
effective search space: 2239893009
effective search space used: 2239893009
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 52 (24.6 bits)