Query 018370
Match_columns 357
No_of_seqs 244 out of 725
Neff 6.0
Searched_HMMs 46136
Date Fri Mar 29 08:26:59 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018370.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/018370hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF02485 Branch: Core-2/I-Bran 100.0 1E-47 2.2E-52 359.2 12.8 221 106-336 1-244 (244)
2 PLN03183 acetylglucosaminyltra 100.0 6.4E-42 1.4E-46 343.6 23.2 229 100-340 74-352 (421)
3 KOG0799 Branching enzyme [Carb 99.9 3.3E-25 7.1E-30 225.1 16.3 215 105-327 104-350 (439)
4 cd02515 Glyco_transf_6 Glycosy 43.1 1.7E+02 0.0038 28.6 9.1 113 69-194 9-133 (271)
5 PF11337 DUF3139: Protein of u 37.3 27 0.00059 27.6 2.3 8 77-84 47-54 (85)
6 PF12273 RCR: Chitin synthesis 28.9 26 0.00056 29.9 0.9 10 32-41 2-11 (130)
7 PF13811 DUF4186: Domain of un 28.8 23 0.00049 30.0 0.5 26 63-88 77-102 (111)
8 PF03032 Brevenin: Brevenin/es 28.2 26 0.00057 25.0 0.7 19 26-44 2-20 (46)
9 COG4459 NapE Periplasmic nitra 24.8 83 0.0018 23.7 2.8 24 21-44 10-33 (62)
10 KOG3970 Predicted E3 ubiquitin 23.8 40 0.00086 32.2 1.2 34 19-52 240-274 (299)
11 PRK07718 fliL flagellar basal 23.6 62 0.0013 28.2 2.3 26 27-52 1-28 (142)
12 PF05984 Cytomega_UL20A: Cytom 22.2 73 0.0016 25.8 2.2 24 28-54 2-25 (100)
13 cd06439 CESA_like_1 CESA_like_ 21.3 6E+02 0.013 22.7 11.0 102 100-209 25-132 (251)
14 PF14812 PBP1_TM: Transmembran 20.9 11 0.00023 30.2 -2.7 19 26-44 61-79 (81)
No 1
>PF02485 Branch: Core-2/I-Branching enzyme; InterPro: IPR003406 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. This is the glycosyltransferase family 14 GT14 from CAZY, a family of two different beta-1,6-N-acetylglucosaminyltransferase enzymes, I-branching enzyme (2.4.1.150 from EC) and core-2 branching enzyme (2.4.1.102 from EC). I-branching enzyme, an integral membrane protein, converts linear into branched poly-N-acetyllactosaminoglycans in the glycosylation pathway, and is responsible for the production of the blood group I-antigen during embryonic development []. Core-2 branching enzyme, also an integral membrane protein, forms crucial side-chain branches in O-glycans in the glycosylation pathway [].; GO: 0008375 acetylglucosaminyltransferase activity, 0016020 membrane; PDB: 3OTK_D 2GAM_A 2GAK_B.
Probab=100.00 E-value=1e-47 Score=359.21 Aligned_cols=221 Identities=28% Similarity=0.476 Sum_probs=149.1
Q ss_pred EEEEEEeCC-CCChHHHHHHHHcccCCCceEEEEeCCCCCC------------CCccceeeccccccccccCcchHHHHH
Q 018370 106 VAFLFLTPG-PLPFEKLWDKFFHGHEGRFSVYVHASRDKPV------------HFSRYFINREIRSEQVVWGRISMVDAE 172 (357)
Q Consensus 106 IAfLiLah~-~l~~~~Lw~~f~~~~~~~~sIYIHvD~k~~~------------~~~~~F~~r~I~s~~V~WG~~S~V~Ae 172 (357)
|||||++|+ + .+++.+.+..++++.+.+|||+|+|++. .+++.|... +..|.||++|||+||
T Consensus 1 iAylil~h~~~--~~~~~~l~~~l~~~~~~f~iHiD~k~~~~~~~~~~~~~~~~~nv~~v~~---r~~v~WG~~S~v~A~ 75 (244)
T PF02485_consen 1 IAYLILAHKND--PEQLERLLRLLYHPDNDFYIHIDKKSPDYFYEEIKKLISCFPNVHFVPK---RVDVRWGGFSLVEAT 75 (244)
T ss_dssp EEEEEEESS----HHHHHHHHHHH--TTSEEEEEE-TTS-HHHHHHHHHHHCT-TTEEE-SS--------TTSHHHHHHH
T ss_pred CEEEEEecCCC--HHHHHHHHHHhcCCCCEEEEEEcCCCChHHHHHHHHhcccCCceeeccc---ccccccCCccHHHHH
Confidence 799999988 6 6677666666777788999999999752 122223322 489999999999999
Q ss_pred HHHHHHHhc-CCCCCEEEEecCCcccCCChHHHHHHHhcC--CccceecccCCCCCCCCCcccc----cCcccccccccc
Q 018370 173 RRLLANALK-DPDNQHFVLLSDSCVPLHDFDYVYNYLMYS--NMSFIDCFEDPGPHGNGRYSEH----MLPEVELKDFRK 245 (357)
Q Consensus 173 l~LL~~AL~-d~~~~yfvLLSgsdiPL~s~~~I~~~L~~~--~~sFIe~~~~~~~~~~~RY~~~----mlp~i~~~~~rk 245 (357)
++||++|++ +++|+|||||||+|+||+++++|++||+.+ +.+|+++...++....+||... +.+.++..++++
T Consensus 76 l~ll~~al~~~~~~~y~~llSg~D~Pl~s~~~i~~~l~~~~~~~~f~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~ 155 (244)
T PF02485_consen 76 LNLLREALKRDGDWDYFILLSGQDYPLKSNEEIHEFLESNNGDNNFIESFSDEDPRESGRYNPRIYDPFRPFFRKRTLYK 155 (244)
T ss_dssp HHHHHHHHHH-S---EEEEEETTEEESS-HHHHHHHHHHTTT--B---BEE--GGGG-HHHHEEEETTEEEEEEEE--EE
T ss_pred HHHHHHHHhcCCCCcEEEEcccccccccchHHHHHHHHhcCCCCcceecccccccchhhcceeeeeeecccccccccccc
Confidence 999999999 889999999999999999999999999985 5788998876654333565543 333444458999
Q ss_pred cceeEEecHHHHHHHHhChhHHHHHHhhhccCCCCCcccCCcchhhhhcccC--CCCCCcccceEEEecC-CCCCCcccc
Q 018370 246 GAQWFTMKRQHALIVMADSLYYSKFRDYCKHGVDGKNCIADEHYLPTFFHMI--DPGGIANRSVTHVDWS-ERKWHPKSY 322 (357)
Q Consensus 246 GSQWfsLtR~~a~~Il~d~~~~~~F~~~~~~~~~~~t~~pDE~yf~TlL~~~--~~~~i~n~~LryIDWs-~g~~hP~~~ 322 (357)
|||||+|||++|++|++|....+.|+.+|+ .+++|||+||||||.+. ..+++.|+++|||||+ ++++||+++
T Consensus 156 GSqW~~Ltr~~v~~il~~~~~~~~~~~~~~-----~~~~pDE~ffqTll~n~~~~~~~~~~~~~r~i~W~~~~~~~p~~~ 230 (244)
T PF02485_consen 156 GSQWFSLTRDFVEYILDDPNYRPKLKKYFR-----FSLCPDESFFQTLLNNSGHFKDTIVNRNLRYIDWSRRGGCHPKTL 230 (244)
T ss_dssp E-S--EEEHHHHHHHHH-HHHHHHHHHHT------TSSSGGGTHHHHH--SSGGG-B-TTTSSSEEE-BTGT-SS---SS
T ss_pred cceeeEeeHHHHHHhhhhHHHHHHHHHhhc-----CccCcchhhHHHhhcccchhcccccCCCEEEEECCCCCCCCCCee
Confidence 999999999999999999999899998885 37999999999999766 4577899999999999 789999999
Q ss_pred ccCCCCHHHHHhcc
Q 018370 323 KRSDVSYDLLKNIT 336 (357)
Q Consensus 323 ~~~Di~~e~L~~~r 336 (357)
+..|++++.|++|+
T Consensus 231 ~~~~~~~~d~~~~~ 244 (244)
T PF02485_consen 231 TICDLGPEDLPWLK 244 (244)
T ss_dssp EEEE--GGGHHHH-
T ss_pred eeeeeCHHHHHhhC
Confidence 99999999998763
No 2
>PLN03183 acetylglucosaminyltransferase family protein; Provisional
Probab=100.00 E-value=6.4e-42 Score=343.59 Aligned_cols=229 Identities=21% Similarity=0.279 Sum_probs=173.1
Q ss_pred CCCCCcEEEEEEeC-CCCChHHHHHHHHcccCCCceEEEEeCCCCCCC------------------Cccceeeccccccc
Q 018370 100 RSKNSKVAFLFLTP-GPLPFEKLWDKFFHGHEGRFSVYVHASRDKPVH------------------FSRYFINREIRSEQ 160 (357)
Q Consensus 100 ~~~~~KIAfLiLah-~~l~~~~Lw~~f~~~~~~~~sIYIHvD~k~~~~------------------~~~~F~~r~I~s~~ 160 (357)
...+||+||||++| |+ .++|.+++.+++++++.||||+|+|++.. .++.+.++ ...
T Consensus 74 ~~~~~r~AYLI~~h~~d--~~~l~RLL~aLYhprN~y~IHlDkKS~~~er~~l~~~v~~~~~~~~~~NV~vl~k---~~~ 148 (421)
T PLN03183 74 QDKLPRFAYLVSGSKGD--LEKLWRTLRALYHPRNQYVVHLDLESPAEERLELASRVENDPMFSKVGNVYMITK---ANL 148 (421)
T ss_pred CCCCCeEEEEEEecCCc--HHHHHHHHHHhcCCCceEEEEecCCCChHHHHHHHHHhhccchhhccCcEEEEec---cee
Confidence 34689999999999 77 89999999999999999999999998631 12222232 257
Q ss_pred cccCcchHHHHHHHHHHHHhc-CCCCCEEEEecCCcccCCChHH-HHHHHhc-CCccceecccCCCCCCCCCccc-----
Q 018370 161 VVWGRISMVDAERRLLANALK-DPDNQHFVLLSDSCVPLHDFDY-VYNYLMY-SNMSFIDCFEDPGPHGNGRYSE----- 232 (357)
Q Consensus 161 V~WG~~S~V~Ael~LL~~AL~-d~~~~yfvLLSgsdiPL~s~~~-I~~~L~~-~~~sFIe~~~~~~~~~~~RY~~----- 232 (357)
|.|||+|||+||+++|+.+|+ ..+|+|||||||+||||+++++ |+.|+.. .++|||+..+..+.....|+..
T Consensus 149 V~WGG~S~V~AtL~~m~~LL~~~~~WDyfinLSGsDyPLkTqdelI~~F~~~nr~~NFI~~~s~~~wk~~~r~~~~i~~p 228 (421)
T PLN03183 149 VTYRGPTMVANTLHACAILLKRSKDWDWFINLSASDYPLVTQDDLIHTFSTLDRNLNFIEHTSQLGWKEEKRAMPLIIDP 228 (421)
T ss_pred eccCChHHHHHHHHHHHHHHhhCCCCCEEEEccCCcccccCHHHHHHHHHhCCCCceeeecccccccchhhhcceEEecC
Confidence 999999999999999999998 5789999999999999999999 4667665 7799999875432221112110
Q ss_pred ------c--c---Cc--ccc-cccccccceeEEecHHHHHHHHhChhHHH-HHHhhhccCCCCCcccCCcchhhhhcccC
Q 018370 233 ------H--M---LP--EVE-LKDFRKGAQWFTMKRQHALIVMADSLYYS-KFRDYCKHGVDGKNCIADEHYLPTFFHMI 297 (357)
Q Consensus 233 ------~--m---lp--~i~-~~~~rkGSQWfsLtR~~a~~Il~d~~~~~-~F~~~~~~~~~~~t~~pDE~yf~TlL~~~ 297 (357)
+ + .+ .+| ..++++|||||+|||++|+||+...+-.+ ..+.|++ ++++|||+||||++.+.
T Consensus 229 gl~~~~ks~~~~~~~~R~~P~~~~lf~GS~W~sLSR~fvey~l~~~dnlpr~ll~y~~-----~t~~pdE~fFqTVl~NS 303 (421)
T PLN03183 229 GLYSTNKSDIYWVTPRRSLPTAFKLFTGSAWMVLSRSFVEYCIWGWDNLPRTLLMYYT-----NFVSSPEGYFHTVICNV 303 (421)
T ss_pred ceeecccchhhhhhhhccCCccccccCCCceEEecHHHHHHHHhcccchHHHHHHHHh-----cCCCCchHHHHHHHhhc
Confidence 0 0 00 112 57899999999999999999996332112 2333343 36889999999999653
Q ss_pred --CCCCCcccceEEEecCCC-CCCccccccCCCCHHHHHh-----cccCCc
Q 018370 298 --DPGGIANRSVTHVDWSER-KWHPKSYKRSDVSYDLLKN-----ITSVYL 340 (357)
Q Consensus 298 --~~~~i~n~~LryIDWs~g-~~hP~~~~~~Di~~e~L~~-----~r~~~~ 340 (357)
..+++.|.++|||||.++ +.||++|+.+|+ +.|.+ +|+.+.
T Consensus 304 ~~f~~t~vn~nLRyI~W~~~~~~~P~~l~~~D~--~~l~~S~~lFARKFd~ 352 (421)
T PLN03183 304 PEFAKTAVNHDLHYISWDNPPKQHPHTLSLNDT--EKMIASGAAFARKFRR 352 (421)
T ss_pred ccccccccCCceeEEecCCCCCCCCcccCHHHH--HHHHhCCCccccCCCC
Confidence 457788999999999986 449999999998 67765 466554
No 3
>KOG0799 consensus Branching enzyme [Carbohydrate transport and metabolism]
Probab=99.93 E-value=3.3e-25 Score=225.09 Aligned_cols=215 Identities=20% Similarity=0.206 Sum_probs=166.8
Q ss_pred cEEEEEEeCCCCChHHHHHHHHcccCCCceEEEEeCCCCCC-------CCccceeecccc--ccccccCcchHHHHHHHH
Q 018370 105 KVAFLFLTPGPLPFEKLWDKFFHGHEGRFSVYVHASRDKPV-------HFSRYFINREIR--SEQVVWGRISMVDAERRL 175 (357)
Q Consensus 105 KIAfLiLah~~l~~~~Lw~~f~~~~~~~~sIYIHvD~k~~~-------~~~~~F~~r~I~--s~~V~WG~~S~V~Ael~L 175 (357)
-+||+.+++|+ .+++.+++.+.+++.+.++||+|.+++. .-.++|.+..|. ...|.|||.|+++|.++|
T Consensus 104 ~~a~~~~v~kd--~~~verll~aiYhPqN~ycihvD~~s~~~fk~~~~~L~~cf~NV~v~~k~~~v~~~G~s~l~a~l~c 181 (439)
T KOG0799|consen 104 PAAFLRVVYKD--YEQVERLLQAIYHPQNVYCIHVDAKSPPEFRVAMQQLASCFPNVIVLPKRESVTYGGHSILAAHLNC 181 (439)
T ss_pred ceEEEEeeccc--HHHHHHHHHHHhCCcCcceEEECCCCCHHHHHHHHHHHhcCCceEEeccccceecCCchhhHHHHHH
Confidence 67888888999 8999999999999999999999999863 235566665553 368999999999999999
Q ss_pred HHHHhcC-CCCCEEEEecCCcccCCChHHHHHHHhc-CCccceecccCCCCC--------CCCC-cccc----cCcccc-
Q 018370 176 LANALKD-PDNQHFVLLSDSCVPLHDFDYVYNYLMY-SNMSFIDCFEDPGPH--------GNGR-YSEH----MLPEVE- 239 (357)
Q Consensus 176 L~~AL~d-~~~~yfvLLSgsdiPL~s~~~I~~~L~~-~~~sFIe~~~~~~~~--------~~~R-Y~~~----mlp~i~- 239 (357)
|+.+++. .+|+||++|||+|+||+|+.++.+.|.. +|.+||+.....+.. ...+ |... +.+.+|
T Consensus 182 ~~~Ll~~~~~W~yfinLs~~D~PlkT~~elv~i~~~L~g~N~i~~~~~~~~~~~~~~k~~~~~~~~~~~~s~~~~~~lp~ 261 (439)
T KOG0799|consen 182 LADLLKLSGDWDYFINLSNSDYPLKTNDELVRIFKILRGANFVEHTSEIGWKLNRKAKWDIIDLKYFRNKSPLPWVILPT 261 (439)
T ss_pred HHHHHhcCCCCceeeeccCCCcccCCHHHHHHHHHHcCCcccccCcccccHHHhcccCCcccccchheecCCCccccCCC
Confidence 9999984 5799999999999999999999999998 999999986543311 0011 1110 111122
Q ss_pred cccccccceeEEecHHHHHHHHhChhHHHHHHhhhccCCCCCcccCCcchhhhhcccCCCCCCcccc--eEEEecCC---
Q 018370 240 LKDFRKGAQWFTMKRQHALIVMADSLYYSKFRDYCKHGVDGKNCIADEHYLPTFFHMIDPGGIANRS--VTHVDWSE--- 314 (357)
Q Consensus 240 ~~~~rkGSQWfsLtR~~a~~Il~d~~~~~~F~~~~~~~~~~~t~~pDE~yf~TlL~~~~~~~i~n~~--LryIDWs~--- 314 (357)
...+++||.|++|+|.+|+|++.+.. ...+..+++ +++.|||+||+||+.+.......+.+ +|++.|..
T Consensus 262 ~~ki~~Gs~~~~LsR~fv~y~i~~~~-~~~ll~~~~-----~t~~~dE~f~~Tl~~n~~~~~g~~~~~~lr~~~W~~~~~ 335 (439)
T KOG0799|consen 262 ALKLFKGSAWVSLSRAFVEYLISGNL-PRTLLMYYN-----NTYSPDEGFFHTLQCNPFGMPGVFNDECLRYTNWDRKDV 335 (439)
T ss_pred ceEEEecceeEEEeHHHHHHHhcCcc-HHHHHHHHh-----CccCcchhhhHhhhccccCCCCcccchhhcceecccccc
Confidence 57899999999999999999999854 456666775 37999999999999776322233445 99999987
Q ss_pred --CCCCccccccCCC
Q 018370 315 --RKWHPKSYKRSDV 327 (357)
Q Consensus 315 --g~~hP~~~~~~Di 327 (357)
.+.||+.++..|.
T Consensus 336 ~~~~~~c~~~~~~~~ 350 (439)
T KOG0799|consen 336 DPPKQHCHSLTVRDF 350 (439)
T ss_pred cccccCCcccccccc
Confidence 3557888777774
No 4
>cd02515 Glyco_transf_6 Glycosyltransferase family 6 comprises enzymes responsible for the production of the human ABO blood group antigens. Glycosyltransferase family 6, GT_6, comprises enzymes with three known activities: alpha-1,3-galactosyltransferase, alpha-1,3 N-acetylgalactosaminyltransferase, and alpha-galactosyltransferase. UDP-galactose:beta-galactosyl alpha-1,3-galactosyltransferase (alpha3GT) catalyzes the transfer of galactose from UDP-alpha-d-galactose into an alpha-1,3 linkage with beta-galactosyl groups in glycoconjugates. The enzyme exists in most mammalian species but is absent from humans, apes, and old world monkeys as a result of the mutational inactivation of the gene. The alpha-1,3 N-acetylgalactosaminyltransferase and alpha-galactosyltransferase are responsible for the production of the human ABO blood group antigens. A N-acetylgalactosaminyltransferases use a UDP-GalNAc donor to convert the H-antigen acceptor to the A antigen, whereas a galactosyltransferase use
Probab=43.07 E-value=1.7e+02 Score=28.55 Aligned_cols=113 Identities=17% Similarity=0.263 Sum_probs=70.8
Q ss_pred cCCCCCCCCCCChHHHHHhhhhhhhcCCCCCCCCCCcEEEEEEeCCCCChHHHHHHHHcccC------CCceEEEEeCCC
Q 018370 69 EWLPPSPVRELTDNEIASRVVIRDILNTPAVRSKNSKVAFLFLTPGPLPFEKLWDKFFHGHE------GRFSVYVHASRD 142 (357)
Q Consensus 69 ~~~~~~~~~~~~d~el~~~~~~~~~~~~~~~~~~~~KIAfLiLah~~l~~~~Lw~~f~~~~~------~~~sIYIHvD~k 142 (357)
.|+.|......=|.+++..- + .+++++||.+..|-|. ....|+.|+...+ -.-.+||=.|..
T Consensus 9 ~W~APivwegtf~~~~l~~~--------y--~~~n~tIgl~vfatGk--Y~~f~~~F~~SAEk~Fm~g~~v~YyVFTD~~ 76 (271)
T cd02515 9 PWLAPIVWEGTFNPDVLDEY--------Y--RKQNITIGLTVFAVGK--YTEFLERFLESAEKHFMVGYRVIYYIFTDKP 76 (271)
T ss_pred CccCceeecCcCCHHHHHHH--------H--HhcCCEEEEEEEEecc--HHHHHHHHHHHHHHhccCCCeeEEEEEeCCc
Confidence 68877777777677776653 1 4688999999999999 6679988887642 345778999965
Q ss_pred CCCCC-----ccceeeccccccccccCcchHHHHHHHHHHHH-hcCCCCCEEEEecCC
Q 018370 143 KPVHF-----SRYFINREIRSEQVVWGRISMVDAERRLLANA-LKDPDNQHFVLLSDS 194 (357)
Q Consensus 143 ~~~~~-----~~~F~~r~I~s~~V~WG~~S~V~Ael~LL~~A-L~d~~~~yfvLLSgs 194 (357)
...+. ..-+....|+ ..-.|-..||..-+.-+-... +.-.+.||...+...
T Consensus 77 ~~~p~v~lg~~r~~~V~~v~-~~~~W~~~sl~Rm~~~~~~~~~~~~~e~DYlF~~dvd 133 (271)
T cd02515 77 AAVPEVELGPGRRLTVLKIA-EESRWQDISMRRMKTLADHIADRIGHEVDYLFCMDVD 133 (271)
T ss_pred ccCcccccCCCceeEEEEec-cccCCcHHHHHHHHHHHHHHHHhhcccCCEEEEeeCC
Confidence 53221 2222222222 347899999977665433322 111245666555443
No 5
>PF11337 DUF3139: Protein of unknown function (DUF3139); InterPro: IPR021486 This family of proteins with unknown function appears to be restricted to Firmicutes.
Probab=37.30 E-value=27 Score=27.61 Aligned_cols=8 Identities=13% Similarity=0.464 Sum_probs=4.3
Q ss_pred CCCChHHH
Q 018370 77 RELTDNEI 84 (357)
Q Consensus 77 ~~~~d~el 84 (357)
...+++++
T Consensus 47 ~gy~e~~I 54 (85)
T PF11337_consen 47 QGYKESDI 54 (85)
T ss_pred cCCcHHHh
Confidence 34555555
No 6
>PF12273 RCR: Chitin synthesis regulation, resistance to Congo red; InterPro: IPR020999 RCR proteins are ER membrane proteins that regulate chitin deposition in fungal cell walls. Although chitin, a linear polymer of beta-1,4-linked N-acetylglucosamine, constitutes only 2% of the cell wall it plays a vital role in the overall protection of the cell wall against stress, noxious chemicals and osmotic pressure changes. Congo red is a cell wall-disrupting benzidine-type dye extensively used in many cell wall mutant studies that specifically targets chitin in yeast cells and inhibits growth. RCR proteins render the yeasts resistant to Congo red by diminishing the content of chitin in the cell wall []. RCR proteins are probably regulating chitin synthase III interact directly with ubiquitin ligase Rsp5, and the VPEY motif is necessary for this, via interaction with the WW domains of Rsp5 [].
Probab=28.88 E-value=26 Score=29.92 Aligned_cols=10 Identities=20% Similarity=0.916 Sum_probs=4.4
Q ss_pred hHHHHHHHHH
Q 018370 32 WIIVLVTMVV 41 (357)
Q Consensus 32 ~~~~~~~~~~ 41 (357)
|+++++.+++
T Consensus 2 W~l~~iii~~ 11 (130)
T PF12273_consen 2 WVLFAIIIVA 11 (130)
T ss_pred eeeHHHHHHH
Confidence 4444444443
No 7
>PF13811 DUF4186: Domain of unknown function (DUF4186)
Probab=28.83 E-value=23 Score=29.99 Aligned_cols=26 Identities=42% Similarity=0.575 Sum_probs=21.8
Q ss_pred CCCCcccCCCCCCCCCCChHHHHHhh
Q 018370 63 SRGCQFEWLPPSPVRELTDNEIASRV 88 (357)
Q Consensus 63 ~~~~~~~~~~~~~~~~~~d~el~~~~ 88 (357)
.++|...|.-++.-++||++|...-+
T Consensus 77 CRgCL~KWH~Ip~gr~Lt~~eq~yiv 102 (111)
T PF13811_consen 77 CRGCLEKWHGIPKGRELTEEEQAYIV 102 (111)
T ss_pred hHHHHHHHhCCCCCCCCCHHHHHHHH
Confidence 46888899999999999999986543
No 8
>PF03032 Brevenin: Brevenin/esculentin/gaegurin/rugosin family; InterPro: IPR004275 In addition to the highly specific cell-mediated immune system, vertebrates possess an efficient host-defence mechanism against invading microorganisms which involves the synthesis of highly potent antimicrobial peptides with a large spectrum of activity. This entry represents a number of these defence peptides secreted from the skin of amphibians, including the opiate-like dermorphins and deltorphins, and the antimicrobial dermoseptins and temporins.; GO: 0006952 defense response, 0042742 defense response to bacterium, 0005576 extracellular region
Probab=28.24 E-value=26 Score=25.04 Aligned_cols=19 Identities=21% Similarity=0.478 Sum_probs=13.0
Q ss_pred CCCCchhHHHHHHHHHHHH
Q 018370 26 HLKRPMWIIVLVTMVVLFL 44 (357)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~ 44 (357)
.+||.++.++++.+|++++
T Consensus 2 tlKKsllLlfflG~ISlSl 20 (46)
T PF03032_consen 2 TLKKSLLLLFFLGTISLSL 20 (46)
T ss_pred cchHHHHHHHHHHHcccch
Confidence 4677777777777776553
No 9
>COG4459 NapE Periplasmic nitrate reductase system, NapE component [Energy production and conversion]
Probab=24.81 E-value=83 Score=23.68 Aligned_cols=24 Identities=33% Similarity=0.566 Sum_probs=16.6
Q ss_pred CCCCCCCCCchhHHHHHHHHHHHH
Q 018370 21 SRHRPHLKRPMWIIVLVTMVVLFL 44 (357)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~ 44 (357)
.+-.++.+|--||.+|+..++++=
T Consensus 10 ~~v~~~~~r~e~itFl~la~~l~P 33 (62)
T COG4459 10 AKVKPSEKRSEWITFLFLAFGLFP 33 (62)
T ss_pred ccCCcchhhhHHHHHHHHHHHHHH
Confidence 444556666689999888776653
No 10
>KOG3970 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=23.77 E-value=40 Score=32.18 Aligned_cols=34 Identities=15% Similarity=0.356 Sum_probs=25.7
Q ss_pred cCCCCCCC-CCCchhHHHHHHHHHHHHhhhcccCC
Q 018370 19 SGSRHRPH-LKRPMWIIVLVTMVVLFLVCAYMYPP 52 (357)
Q Consensus 19 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 52 (357)
-|++.||+ ++|+.|.++++.++++.+|.+.|-.-
T Consensus 240 ~g~s~rP~~~~~ra~fli~lgvLafi~~i~lM~rl 274 (299)
T KOG3970|consen 240 HGGSGRPQEAKKRALFLIFLGVLAFITIIMLMKRL 274 (299)
T ss_pred hCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45666765 47788999999888888888777554
No 11
>PRK07718 fliL flagellar basal body-associated protein FliL; Reviewed
Probab=23.62 E-value=62 Score=28.17 Aligned_cols=26 Identities=23% Similarity=0.435 Sum_probs=16.8
Q ss_pred CCCchhHHHHHHHHHHHHh--hhcccCC
Q 018370 27 LKRPMWIIVLVTMVVLFLV--CAYMYPP 52 (357)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~~--~~~~~~~ 52 (357)
+||++++++++.++++.++ ++|+|--
T Consensus 1 ~kkkl~~i~~i~l~~l~~~g~~~~~~~~ 28 (142)
T PRK07718 1 MKNKLIKIMLIILIVIALIGTAALVLVM 28 (142)
T ss_pred CcchHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 5778888887777665554 4455443
No 12
>PF05984 Cytomega_UL20A: Cytomegalovirus UL20A protein; InterPro: IPR009245 This family consists of several Cytomegalovirus UL20A proteins. UL20A is thought to be a glycoprotein [].
Probab=22.18 E-value=73 Score=25.79 Aligned_cols=24 Identities=25% Similarity=0.623 Sum_probs=13.1
Q ss_pred CCchhHHHHHHHHHHHHhhhcccCCCC
Q 018370 28 KRPMWIIVLVTMVVLFLVCAYMYPPHT 54 (357)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 54 (357)
.|+.||+-||.+.. ..|...|.|.
T Consensus 2 aRRlwiLslLAVtL---tVALAAPsQK 25 (100)
T PF05984_consen 2 ARRLWILSLLAVTL---TVALAAPSQK 25 (100)
T ss_pred chhhHHHHHHHHHH---HHHhhccccc
Confidence 46788876665543 3333345443
No 13
>cd06439 CESA_like_1 CESA_like_1 is a member of the cellulose synthase (CESA) superfamily. This is a subfamily of cellulose synthase (CESA) superfamily. CESA superfamily includes a wide variety of glycosyltransferase family 2 enzymes that share the common characteristic of catalyzing the elongation of polysaccharide chains. The members of the superfamily include cellulose synthase catalytic subunit, chitin synthase, glucan biosynthesis protein and other families of CESA-like proteins.
Probab=21.32 E-value=6e+02 Score=22.75 Aligned_cols=102 Identities=13% Similarity=0.057 Sum_probs=56.1
Q ss_pred CCCCCcEEEEEEeCCCC-ChHHHHHHHHcccCCC--ceEEEEeCCCCCCCCc--cceeeccccc-cccccCcchHHHHHH
Q 018370 100 RSKNSKVAFLFLTPGPL-PFEKLWDKFFHGHEGR--FSVYVHASRDKPVHFS--RYFINREIRS-EQVVWGRISMVDAER 173 (357)
Q Consensus 100 ~~~~~KIAfLiLah~~l-~~~~Lw~~f~~~~~~~--~sIYIHvD~k~~~~~~--~~F~~r~I~s-~~V~WG~~S~V~Ael 173 (357)
.+..|+++.+|.++++. .+++..+.+.+..... +.|+|..|...+.... .-+....+.- ... ...+...|-.
T Consensus 25 ~~~~~~isVvip~~n~~~~l~~~l~si~~q~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~v~~i~~~--~~~g~~~a~n 102 (251)
T cd06439 25 PAYLPTVTIIIPAYNEEAVIEAKLENLLALDYPRDRLEIIVVSDGSTDGTAEIAREYADKGVKLLRFP--ERRGKAAALN 102 (251)
T ss_pred CCCCCEEEEEEecCCcHHHHHHHHHHHHhCcCCCCcEEEEEEECCCCccHHHHHHHHhhCcEEEEEcC--CCCChHHHHH
Confidence 45678999999999973 3445555555433333 7888988876542110 0010000000 011 2234555655
Q ss_pred HHHHHHhcCCCCCEEEEecCCcccCCChHHHHHHHh
Q 018370 174 RLLANALKDPDNQHFVLLSDSCVPLHDFDYVYNYLM 209 (357)
Q Consensus 174 ~LL~~AL~d~~~~yfvLLSgsdiPL~s~~~I~~~L~ 209 (357)
.+++.| ..++++++-+.|+|- .+.+...+.
T Consensus 103 ~gi~~a----~~d~i~~lD~D~~~~--~~~l~~l~~ 132 (251)
T cd06439 103 RALALA----TGEIVVFTDANALLD--PDALRLLVR 132 (251)
T ss_pred HHHHHc----CCCEEEEEccccCcC--HHHHHHHHH
Confidence 555554 348899998888885 455554443
No 14
>PF14812 PBP1_TM: Transmembrane domain of transglycosylase PBP1 at N-terminal; PDB: 3FWL_A 3VMA_A.
Probab=20.88 E-value=11 Score=30.25 Aligned_cols=19 Identities=21% Similarity=0.641 Sum_probs=5.1
Q ss_pred CCCCchhHHHHHHHHHHHH
Q 018370 26 HLKRPMWIIVLVTMVVLFL 44 (357)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~ 44 (357)
+.+|+.|+.+|+.|.+||+
T Consensus 61 ~rkKrrwlwLlikl~lV~a 79 (81)
T PF14812_consen 61 PRKKRRWLWLLIKLFLVFA 79 (81)
T ss_dssp ----------TTTTHCCHC
T ss_pred ccccchhHHHHHHHHHHhe
Confidence 5667788877777555443
Done!