Query 018370
Match_columns 357
No_of_seqs 244 out of 725
Neff 6.0
Searched_HMMs 29240
Date Mon Mar 25 14:11:58 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018370.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/018370hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2gak_A Beta-1,6-N-acetylglucos 100.0 4.6E-47 1.6E-51 378.6 16.0 247 76-334 48-356 (391)
2 2k1a_A Integrin alpha-IIB; sin 35.2 21 0.00071 24.1 2.1 20 28-47 7-26 (42)
3 2knc_A Integrin alpha-IIB; tra 34.0 21 0.00073 25.4 2.1 19 28-46 9-27 (54)
4 2l8s_A Integrin alpha-1; trans 32.8 35 0.0012 24.2 3.1 20 27-46 5-24 (54)
5 2fy7_A Beta-1,4-galactosyltran 25.0 3.9E+02 0.013 24.3 11.0 106 76-201 35-146 (287)
6 2lk9_A Bone marrow stromal ant 19.3 59 0.002 20.9 1.9 22 28-49 4-25 (35)
7 3ukw_C Bimax1 peptide; arm rep 17.6 37 0.0013 20.3 0.6 11 20-30 1-11 (28)
8 3hd7_B Syntaxin-1A; membrane p 15.5 45 0.0015 26.5 0.9 21 26-46 81-101 (109)
9 3arc_M Photosystem II reaction 14.5 98 0.0034 20.1 2.1 17 33-49 11-27 (36)
10 1iio_A Conserved hypothetical 12.1 53 0.0018 25.4 0.3 21 190-210 60-80 (84)
No 1
>2gak_A Beta-1,6-N-acetylglucosaminyltransferase; glycoprotein, CIS-peptide, dimer; HET: NAG; 2.00A {Mus musculus} PDB: 2gam_A* 3otk_A*
Probab=100.00 E-value=4.6e-47 Score=378.58 Aligned_cols=247 Identities=13% Similarity=0.143 Sum_probs=192.1
Q ss_pred CCCCChHHHHHhhhhhh-hc--CCC---CCC--CCCCcEEEEEEeCCCCChHHHHHHHHcccCCCceEEEEeCCCCCCC-
Q 018370 76 VRELTDNEIASRVVIRD-IL--NTP---AVR--SKNSKVAFLFLTPGPLPFEKLWDKFFHGHEGRFSVYVHASRDKPVH- 146 (357)
Q Consensus 76 ~~~~~d~el~~~~~~~~-~~--~~~---~~~--~~~~KIAfLiLah~~l~~~~Lw~~f~~~~~~~~sIYIHvD~k~~~~- 146 (357)
...++|++++.....|+ ++ +.+ |.+ +..+||||||++|++ ++++.+++.+++++.+.||||+|++++..
T Consensus 48 ~~~~~~~~~~~~~~~C~~~~~~~~~~~~pl~~~e~~~kiAflil~h~d--~~~l~rll~~ly~p~n~y~IHvD~ks~~~~ 125 (391)
T 2gak_A 48 RPRWTPHDYINMTRDCASFIRTRKYIVEPLTKEEVGFPIAYSIVVHHK--IEMLDRLLRAIYMPQNFYCIHVDRKAEESF 125 (391)
T ss_dssp SCCCCHHHHHHHTTSHHHHHHHHTCCCSCSCHHHHTSCEEEEEEECSC--HHHHHHHHHHHCCTTSEEEEEECTTSCHHH
T ss_pred ccccCcchhccccCCchhhhhcccccCCCCCccccCCCEEEEEEecCC--HHHHHHHHHHHhCCCCeEEEEEeCCCCHHH
Confidence 34688999988877777 33 122 211 346899999999998 66665555556778999999999998631
Q ss_pred ------Cccceeeccc--cccccccCcchHHHHHHHHHHHHhcC-CCCCEEEEecCCcccCCChHHHHHHHhc-CCccce
Q 018370 147 ------FSRYFINREI--RSEQVVWGRISMVDAERRLLANALKD-PDNQHFVLLSDSCVPLHDFDYVYNYLMY-SNMSFI 216 (357)
Q Consensus 147 ------~~~~F~~r~I--~s~~V~WG~~S~V~Ael~LL~~AL~d-~~~~yfvLLSgsdiPL~s~~~I~~~L~~-~~~sFI 216 (357)
...+|.++.| ++..|.||++|||+||++||++||++ .+|+|||||||+|+||+|+++|++||+. +++|||
T Consensus 126 ~~~~~~~~~~f~NV~v~~~~~~v~WGg~S~v~A~l~ll~~aL~~~~~w~yfilLSgsD~PLkt~~~i~~~l~~~~~~nFI 205 (391)
T 2gak_A 126 LAAVQGIASCFDNVFVASQLESVVYASWTRVKADLNCMKDLYRMNANWKYLINLCGMDFPIKTNLEIVRKLKCSTGENNL 205 (391)
T ss_dssp HHHHHHHHHTCTTEEECSSCCCCCTTSHHHHHHHHHHHHHHHHHCSCCCEEEEEETTCEESSCHHHHHHHHHHTTTCCBC
T ss_pred HHHHHHHHhcCCCEEEeccCcccccCCchHHHHHHHHHHHHHhcCCCCCEEEEecCCCccccCHHHHHHHHHhcCCCcee
Confidence 2344656665 36899999999999999999999984 5999999999999999999999999997 789999
Q ss_pred ecccCCCCC-CCCCcc--------------cccCcccccccccccceeEEecHHHHHHHHhChhHHHHHHhhhccCCCCC
Q 018370 217 DCFEDPGPH-GNGRYS--------------EHMLPEVELKDFRKGAQWFTMKRQHALIVMADSLYYSKFRDYCKHGVDGK 281 (357)
Q Consensus 217 e~~~~~~~~-~~~RY~--------------~~mlp~i~~~~~rkGSQWfsLtR~~a~~Il~d~~~~~~F~~~~~~~~~~~ 281 (357)
++.++++.. .+.+|. .+++|. ..++++|||||+|+|++|++|++|.. .++|.+||+ +
T Consensus 206 e~~~~~~~~~~R~~~~~~~~~~~l~~~~~~k~~~P~--~~~~~~GSqW~~LtR~~v~~vl~d~~-~~~~~~~~k-----~ 277 (391)
T 2gak_A 206 ETEKMPPNKEERWKKRYAVVDGKLTNTGIVKAPPPL--KTPLFSGSAYFVVTREYVGYVLENEN-IQKLMEWAQ-----D 277 (391)
T ss_dssp CBEECCGGGSHHHHEEEEEETTEEEEEEEECCCCSC--SSCCEECCSCCEEEHHHHHHHHHCHH-HHHHHHHHT-----T
T ss_pred eccCCCcccccceEeeeeccccceeeecccccCCcc--ccceecccceeEecHHHHHHHHhCCc-HHHHHHHHc-----C
Confidence 999866532 222221 112332 57899999999999999999999965 678889998 4
Q ss_pred cccCCcchhhhhcccCC-CCC----------CcccceEEEecC-------CCCCCcc----------ccccCCCCHHHHH
Q 018370 282 NCIADEHYLPTFFHMID-PGG----------IANRSVTHVDWS-------ERKWHPK----------SYKRSDVSYDLLK 333 (357)
Q Consensus 282 t~~pDE~yf~TlL~~~~-~~~----------i~n~~LryIDWs-------~g~~hP~----------~~~~~Di~~e~L~ 333 (357)
+|+|||||||||+.+.+ ++. ..|+++|||||+ +|++||. +|+.+|+ +.|.
T Consensus 278 t~~pDE~ffqTll~~~~~pg~~~~~~~~~~~~~~~~lr~i~W~~~~g~~~~G~p~p~c~~~~~~~~C~~~~~Dl--~~l~ 355 (391)
T 2gak_A 278 TYSPDEFLWATIQRIPEVPGSFPSSNKYDLSDMNAIARFVKWQYFEGDVSNGAPYPPCSGVHVRSVCVFGAGDL--SWML 355 (391)
T ss_dssp SSSGGGTHHHHHTTSTTSTTCCCSSGGGCBCTTTSSSEEECBTTTCSCGGGTCSSCCCSSEEETTEEECCGGGH--HHHT
T ss_pred CcCCchhHHHHHhhccCCCCccccccccccccccCceEEEEecccCCccccCCCCCCCccceecceeeecHHHH--HHHH
Confidence 89999999999997653 222 247899999997 3556787 8999998 6664
Q ss_pred h
Q 018370 334 N 334 (357)
Q Consensus 334 ~ 334 (357)
+
T Consensus 356 ~ 356 (391)
T 2gak_A 356 R 356 (391)
T ss_dssp T
T ss_pred h
Confidence 4
No 2
>2k1a_A Integrin alpha-IIB; single-PASS transmembrane segment, alternative splicing, calcium, cell adhesion, cleavage on PAIR of basic residues; NMR {Homo sapiens} PDB: 2k9j_A
Probab=35.23 E-value=21 Score=24.09 Aligned_cols=20 Identities=20% Similarity=0.497 Sum_probs=14.3
Q ss_pred CCchhHHHHHHHHHHHHhhh
Q 018370 28 KRPMWIIVLVTMVVLFLVCA 47 (357)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~~~ 47 (357)
.-|.||+++.++..+.+++.
T Consensus 7 ~vp~wiIi~s~l~GLllL~l 26 (42)
T 2k1a_A 7 AIPIWWVLVGVLGGLLLLTI 26 (42)
T ss_dssp CCCHHHHHHHHHHHHHHHHH
T ss_pred CcchHHHHHHHHHHHHHHHH
Confidence 45899998887776665553
No 3
>2knc_A Integrin alpha-IIB; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=33.98 E-value=21 Score=25.36 Aligned_cols=19 Identities=21% Similarity=0.538 Sum_probs=13.1
Q ss_pred CCchhHHHHHHHHHHHHhh
Q 018370 28 KRPMWIIVLVTMVVLFLVC 46 (357)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~~ 46 (357)
.-|.|||++.++.++.+++
T Consensus 9 ~vp~wiIi~svl~GLllL~ 27 (54)
T 2knc_A 9 AIPIWWVLVGVLGGLLLLT 27 (54)
T ss_dssp TCCHHHHHHHHHHHHHHHH
T ss_pred CcchHHHHHHHHHHHHHHH
Confidence 4589998877776555544
No 4
>2l8s_A Integrin alpha-1; transmembrane region, detergent micelle, CE adhesion; NMR {Homo sapiens}
Probab=32.84 E-value=35 Score=24.22 Aligned_cols=20 Identities=30% Similarity=0.712 Sum_probs=14.1
Q ss_pred CCCchhHHHHHHHHHHHHhh
Q 018370 27 LKRPMWIIVLVTMVVLFLVC 46 (357)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~~~ 46 (357)
..-|.|||++.++.++.+++
T Consensus 5 ~~vp~WiIi~svl~GLLLL~ 24 (54)
T 2l8s_A 5 GRVPLWVILLSAFAGLLLLM 24 (54)
T ss_dssp CCCCTHHHHHHHHHHHHHHH
T ss_pred ccCchHHHHHHHHHHHHHHH
Confidence 35689999887776655554
No 5
>2fy7_A Beta-1,4-galactosyltransferase 1; M339H mutant, APO enzyme; HET: PGE; 1.70A {Homo sapiens} PDB: 2aec_A* 2aes_A* 2ae7_A* 2ah9_A* 2agd_A* 2fya_A* 2fyb_A* 3ee5_A* 2fyc_B* 1tw1_A* 1tw5_A* 1tvy_A* 1nmm_B* 1o0r_A* 1yro_B* 1nf5_B* 1nhe_B* 1nkh_B* 1nqi_B* 1nwg_B* ...
Probab=25.03 E-value=3.9e+02 Score=24.27 Aligned_cols=106 Identities=15% Similarity=0.104 Sum_probs=57.9
Q ss_pred CCCCChHHHHHhhh-hhhhc-CCCCCCCCCCcEEEEEEeCCCC-ChHHHHHHHH---cccCCCceEEEEeCCCCCCCCcc
Q 018370 76 VRELTDNEIASRVV-IRDIL-NTPAVRSKNSKVAFLFLTPGPL-PFEKLWDKFF---HGHEGRFSVYVHASRDKPVHFSR 149 (357)
Q Consensus 76 ~~~~~d~el~~~~~-~~~~~-~~~~~~~~~~KIAfLiLah~~l-~~~~Lw~~f~---~~~~~~~sIYIHvD~k~~~~~~~ 149 (357)
..+++-||+..... ..+-. -.|..-...++|+.+|-+++.. .+....+.+. +.....+.|+|--|. .+
T Consensus 35 ~~~~~~~~~~~~~~~~~~gg~~~p~~c~~~~~VSIIIP~yN~~~~L~~~L~sl~~~l~q~~~~~EIiVVdds-~d----- 108 (287)
T 2fy7_A 35 NMPVDLELVAKQNPNVKMGGRYAPRDCVSPHKVAIIIPFRNRQEHLKYWLYYLHPVLQRQQLDYGIYVINQA-GD----- 108 (287)
T ss_dssp CSCCCHHHHHHHCTTCBTTTEECCSSSBCSCEEEEEEEESSCHHHHHHHHHHHHHHHHHTTCEEEEEEEEEC-SS-----
T ss_pred cCCCCHHHHHhhCCCcccCCcCcCCCCCcCCcEEEEEeeCCCHHHHHHHHHHHHHHHHHhcCCceEEEEEeC-CC-----
Confidence 34677888875432 11111 1121113458999999999872 3344444444 222345666643331 11
Q ss_pred ceeeccccccccccCcchHHHHHHHHHHHHhcCCCCCEEEEecCCcccCCCh
Q 018370 150 YFINREIRSEQVVWGRISMVDAERRLLANALKDPDNQHFVLLSDSCVPLHDF 201 (357)
Q Consensus 150 ~F~~r~I~s~~V~WG~~S~V~Ael~LL~~AL~d~~~~yfvLLSgsdiPL~s~ 201 (357)
++++...|.-..+..|++....+|++++-+.|+|..+.
T Consensus 109 --------------~~f~~a~a~N~G~~~al~~A~gd~i~flD~D~i~~~d~ 146 (287)
T 2fy7_A 109 --------------TIFNRAKLLNVGFQEALKDYDYTCFVFSDVDLIPMNDH 146 (287)
T ss_dssp --------------SCCCHHHHHHHHHHHHHHHSCCCEEEEECTTEEESBTT
T ss_pred --------------CccchhhhhhhHHHHHHHhCCCCEEEEECCCcccCCCc
Confidence 11222233333444555555779999999999998874
No 6
>2lk9_A Bone marrow stromal antigen 2; membrane, micelle, antiviral protein-immune system complex; NMR {Homo sapiens}
Probab=19.32 E-value=59 Score=20.87 Aligned_cols=22 Identities=23% Similarity=0.327 Sum_probs=15.6
Q ss_pred CCchhHHHHHHHHHHHHhhhcc
Q 018370 28 KRPMWIIVLVTMVVLFLVCAYM 49 (357)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~ 49 (357)
|-+.|+.+++.++++.+..+.|
T Consensus 4 KL~lg~Gvl~LLviV~LgV~LI 25 (35)
T 2lk9_A 4 KLLLGIGILVLLIIVILGVPLI 25 (35)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHH
T ss_pred eeeecccHHHHHHHHHhcchhe
Confidence 4567888888888877666554
No 7
>3ukw_C Bimax1 peptide; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding, protein transport-IN complex; HET: BTB; 2.10A {Mus musculus}
Probab=17.62 E-value=37 Score=20.31 Aligned_cols=11 Identities=64% Similarity=0.912 Sum_probs=2.6
Q ss_pred CCCCCCCCCCc
Q 018370 20 GSRHRPHLKRP 30 (357)
Q Consensus 20 ~~~~~~~~~~~ 30 (357)
|+|.|.+.|+|
T Consensus 1 gsrrrrprkrp 11 (28)
T 3ukw_C 1 GSRRRRPRKRP 11 (28)
T ss_dssp ------CCCCC
T ss_pred CccccccccCC
Confidence 35555555554
No 8
>3hd7_B Syntaxin-1A; membrane protein, coiled-coil, 4-helical bundle, cell juncti cytoplasmic vesicle, membrane, phosphoprotein; HET: GGG; 3.40A {Rattus norvegicus} PDB: 3hd9_B 3ipd_B
Probab=15.54 E-value=45 Score=26.54 Aligned_cols=21 Identities=10% Similarity=0.388 Sum_probs=12.2
Q ss_pred CCCCchhHHHHHHHHHHHHhh
Q 018370 26 HLKRPMWIIVLVTMVVLFLVC 46 (357)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~~~ 46 (357)
+.+|++|++++++++.+.+++
T Consensus 81 ~~rkk~~i~l~~~~i~~~i~~ 101 (109)
T 3hd7_B 81 KARRKKIMIIICCVILGIIIA 101 (109)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred hccCcceehHHHHHHHHHHHH
Confidence 345667777766555544444
No 9
>3arc_M Photosystem II reaction center protein M; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 1s5l_M* 2axt_M* 3bz1_M* 3bz2_M* 3kzi_M* 3prq_M* 3prr_M* 3a0b_M* 3a0h_M*
Probab=14.45 E-value=98 Score=20.13 Aligned_cols=17 Identities=24% Similarity=0.516 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHhhhcc
Q 018370 33 IIVLVTMVVLFLVCAYM 49 (357)
Q Consensus 33 ~~~~~~~~~~~~~~~~~ 49 (357)
.+++++++.+|++..|+
T Consensus 11 t~Lfi~iPt~FLlilYv 27 (36)
T 3arc_M 11 TALFVLVPSVFLIILYV 27 (36)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhh
Confidence 45677888999999887
No 10
>1iio_A Conserved hypothetical protein MTH865; 4-helical bundle, monomer, structural genomics, unknown function; NMR {Methanothermobacterthermautotrophicus str} SCOP: a.39.4.1
Probab=12.06 E-value=53 Score=25.36 Aligned_cols=21 Identities=14% Similarity=0.276 Sum_probs=17.7
Q ss_pred EecCCcccCCChHHHHHHHhc
Q 018370 190 LLSDSCVPLHDFDYVYNYLMY 210 (357)
Q Consensus 190 LLSgsdiPL~s~~~I~~~L~~ 210 (357)
+|..+|+|+++.+++.+-+..
T Consensus 60 ll~~~DFP~ksA~~lAd~iv~ 80 (84)
T 1iio_A 60 VLTADDFPFKSAEEVADTIVN 80 (84)
T ss_dssp GSCGGGSBCSHHHHHHHHHHH
T ss_pred hCCcccCCCCCHHHHHHHHHH
Confidence 567899999999999887753
Done!