Query 018370
Match_columns 357
No_of_seqs 244 out of 725
Neff 6.0
Searched_HMMs 13730
Date Mon Mar 25 14:12:05 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018370.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/018370hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1qg8a_ c.68.1.1 (A:) Spore co 51.0 56 0.0041 26.1 11.3 109 104-216 1-122 (255)
2 d2axtj1 f.23.32.1 (J:7-40) Pho 17.8 40 0.0029 20.0 2.4 22 28-49 1-23 (34)
3 d1iioa_ a.39.4.1 (A:) Hypothet 16.4 16 0.0012 26.4 0.3 21 190-210 60-80 (84)
4 d2qalc1 d.52.3.1 (C:1-105) Rib 16.0 31 0.0022 25.7 1.9 31 245-275 17-47 (105)
5 d2uubc1 d.52.3.1 (C:2-106) Rib 12.8 23 0.0017 26.3 0.3 31 245-275 17-47 (105)
6 d1vkfa_ c.1.29.1 (A:) Glycerol 10.0 86 0.0062 25.2 3.1 97 108-220 22-124 (172)
7 d1x4ka2 g.39.1.3 (A:8-34) Four 9.6 40 0.0029 19.0 0.5 8 15-22 6-13 (27)
8 d1c9fa_ d.15.2.1 (A:) Caspase- 8.6 43 0.0031 24.2 0.5 13 281-294 55-67 (87)
9 d1d4ta_ d.93.1.1 (A:) The Xlp 8.5 1E+02 0.0074 21.5 2.7 22 158-179 3-24 (104)
10 d1lzia_ c.68.1.9 (A:) Glycosyl 8.1 1.6E+02 0.012 25.3 4.3 117 69-199 27-156 (283)
No 1
>d1qg8a_ c.68.1.1 (A:) Spore coat polysaccharide biosynthesis protein SpsA {Bacillus subtilis [TaxId: 1423]}
Probab=50.99 E-value=56 Score=26.07 Aligned_cols=109 Identities=9% Similarity=0.116 Sum_probs=63.8
Q ss_pred CcEEEEEEeCCCC-ChHHHHHHHHcccCCCceEEEEeCCCCCCCC---ccceeeccc---cccccc----cCcchHHHHH
Q 018370 104 SKVAFLFLTPGPL-PFEKLWDKFFHGHEGRFSVYVHASRDKPVHF---SRYFINREI---RSEQVV----WGRISMVDAE 172 (357)
Q Consensus 104 ~KIAfLiLah~~l-~~~~Lw~~f~~~~~~~~sIYIHvD~k~~~~~---~~~F~~r~I---~s~~V~----WG~~S~V~Ae 172 (357)
|||+.+|-+++.. -+++.++.+..-..+.+.|+|.-|...+... .......+| ...... =...++-.|-
T Consensus 1 P~vSiiip~yN~~~~l~~~l~Si~~Qt~~~~eiivvdd~S~d~t~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~g~~~a~ 80 (255)
T d1qg8a_ 1 PKVSVIMTSYNKSDYVAKSISSILSQTFSDFELFIMDDNSNEETLNVIRPFLNDNRVRFYQSDISGVKERTEKTRYAALI 80 (255)
T ss_dssp CCEEEEEEESSCTTTHHHHHHHHHTCSCCCEEEEEEECSCCHHHHHHHGGGGGSTTEEEEECCCCSHHHHHSSCHHHHHH
T ss_pred CEEEEEEecCCCHHHHHHHHHHHHhCCCCCeEEEEEECCCCccHHHHHHHhhhhcccccccccccccccccccchhcccc
Confidence 7899999998753 4678778877666678999999886543110 011000000 111111 1234444454
Q ss_pred HHHHHHHhcCCCCCEEEEecCCcccCCC-hHHHHHHHhc-CCccce
Q 018370 173 RRLLANALKDPDNQHFVLLSDSCVPLHD-FDYVYNYLMY-SNMSFI 216 (357)
Q Consensus 173 l~LL~~AL~d~~~~yfvLLSgsdiPL~s-~~~I~~~L~~-~~~sFI 216 (357)
-.+++.| +.+|+++|-+.|++..+ .+.+.+++.. .+..++
T Consensus 81 N~gi~~a----~g~~i~~lD~Dd~~~p~~l~~~~~~~~~~~~~~~v 122 (255)
T d1qg8a_ 81 NQAIEMA----EGEYITYATDDNIYMPDRLLKMVRELDTHPEKAVI 122 (255)
T ss_dssp HHHHHHC----CCSEEEEEETTEEECTTHHHHHHHHHHHCTTCCEE
T ss_pred ccccccc----ccccccccccccccccchHHHHHHHHHhCCCCCeE
Confidence 4555554 56899999999999765 3445556654 345555
No 2
>d2axtj1 f.23.32.1 (J:7-40) Photosystem II reaction center protein J, PsbJ {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=17.84 E-value=40 Score=19.97 Aligned_cols=22 Identities=23% Similarity=0.640 Sum_probs=12.5
Q ss_pred CCchhHHHHHHHHH-HHHhhhcc
Q 018370 28 KRPMWIIVLVTMVV-LFLVCAYM 49 (357)
Q Consensus 28 ~~~~~~~~~~~~~~-~~~~~~~~ 49 (357)
|-|.|++..+..+. +.+++.+.
T Consensus 1 riPLWlv~tv~G~~vi~~vG~Ff 23 (34)
T d2axtj1 1 RIPLWIVATVAGMGVIVIVGLFF 23 (34)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHH
T ss_pred CCcEEEeeehhhhhhHhheeeee
Confidence 35889987765543 33444333
No 3
>d1iioa_ a.39.4.1 (A:) Hypothetical protein MTH865 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}
Probab=16.36 E-value=16 Score=26.44 Aligned_cols=21 Identities=14% Similarity=0.276 Sum_probs=18.1
Q ss_pred EecCCcccCCChHHHHHHHhc
Q 018370 190 LLSDSCVPLHDFDYVYNYLMY 210 (357)
Q Consensus 190 LLSgsdiPL~s~~~I~~~L~~ 210 (357)
+|+++|||+++.+++.+-+..
T Consensus 60 ~l~~~DFP~ksae~lad~ii~ 80 (84)
T d1iioa_ 60 VLTADDFPFKSAEEVADTIVN 80 (84)
T ss_dssp GSCGGGSBCSHHHHHHHHHHH
T ss_pred hcCcccCCCCCHHHHHHHHHH
Confidence 578899999999999887754
No 4
>d2qalc1 d.52.3.1 (C:1-105) Ribosomal protein S3 N-terminal domain {Escherichia coli [TaxId: 562]}
Probab=15.98 E-value=31 Score=25.67 Aligned_cols=31 Identities=13% Similarity=0.112 Sum_probs=25.7
Q ss_pred ccceeEEecHHHHHHHHhChhHHHHHHhhhc
Q 018370 245 KGAQWFTMKRQHALIVMADSLYYSKFRDYCK 275 (357)
Q Consensus 245 kGSQWfsLtR~~a~~Il~d~~~~~~F~~~~~ 275 (357)
-.|.||+=.++.+++|.+|........++++
T Consensus 17 ~~S~Wfa~~~~Y~~~l~eD~~IR~~i~k~~~ 47 (105)
T d2qalc1 17 WNSTWFANTKEFADNLDSDFKVRQYLTKELA 47 (105)
T ss_dssp CSCCCCCCHHHHHHHHHHHHHHHHHHHHTTS
T ss_pred CCCEEcCCccchHHHHHHHHHHHHHHHHHHH
Confidence 4699999999999999999987766666654
No 5
>d2uubc1 d.52.3.1 (C:2-106) Ribosomal protein S3 N-terminal domain {Thermus thermophilus [TaxId: 274]}
Probab=12.75 E-value=23 Score=26.33 Aligned_cols=31 Identities=13% Similarity=0.229 Sum_probs=25.7
Q ss_pred ccceeEEecHHHHHHHHhChhHHHHHHhhhc
Q 018370 245 KGAQWFTMKRQHALIVMADSLYYSKFRDYCK 275 (357)
Q Consensus 245 kGSQWfsLtR~~a~~Il~d~~~~~~F~~~~~ 275 (357)
-.|.||+=.++.+.+|.+|......+.++++
T Consensus 17 w~S~W~a~~~~y~~~l~eD~~IR~~i~k~~~ 47 (105)
T d2uubc1 17 WESRWYAGKKQYRHLLLEDQRIRGLLEKELY 47 (105)
T ss_dssp CSCBCCCCTTTTTHHHHHHHHHHHHHHHSTT
T ss_pred CCceEcCChhhhHHHHHHHHHHHHHHHhhcc
Confidence 3699999899999999999998776666554
No 6
>d1vkfa_ c.1.29.1 (A:) Glycerol uptake operon antiterminator-related protein TM1436 {Thermotoga maritima [TaxId: 2336]}
Probab=10.04 E-value=86 Score=25.20 Aligned_cols=97 Identities=11% Similarity=0.179 Sum_probs=50.8
Q ss_pred EEEEeCCCC-ChHHHHHHHHcccCCCceEEEEeCCCCCC---CCccceeeccccccccccCcchHHHHHHHHHHHHhcC-
Q 018370 108 FLFLTPGPL-PFEKLWDKFFHGHEGRFSVYVHASRDKPV---HFSRYFINREIRSEQVVWGRISMVDAERRLLANALKD- 182 (357)
Q Consensus 108 fLiLah~~l-~~~~Lw~~f~~~~~~~~sIYIHvD~k~~~---~~~~~F~~r~I~s~~V~WG~~S~V~Ael~LL~~AL~d- 182 (357)
++||..+++ .+..+.+++.+... .+|||+|-=... ....-|..+ + +--+.+..--.+++.|-+.
T Consensus 22 ~iflL~g~I~~l~~~v~~~k~~gK---~v~VHiDLi~GL~~d~~av~flk~-~-------~~dGIISTk~~~i~~Ak~~G 90 (172)
T d1vkfa_ 22 VVFLLKSDILNLKFHLKILKDRGK---TVFVDMDFVNGLGEGEEAILFVKK-A-------GADGIITIKPKNYVVAKKNG 90 (172)
T ss_dssp EEEECCEETTTHHHHHHHHHHTTC---EEEEEGGGEETCCSSHHHHHHHHH-H-------TCSEEEESCHHHHHHHHHTT
T ss_pred EEEEecCcHHHHHHHHHHHHHcCC---EEEEEeeecCCCCCCHHHHHHHHH-c-------CCCEEEECCHHHHHHHHHcC
Confidence 445555552 57888888776533 799999953221 112222211 1 1111222223445555543
Q ss_pred -CCCCEEEEecCCcccCCChHHHHHHHhcCCccceeccc
Q 018370 183 -PDNQHFVLLSDSCVPLHDFDYVYNYLMYSNMSFIDCFE 220 (357)
Q Consensus 183 -~~~~yfvLLSgsdiPL~s~~~I~~~L~~~~~sFIe~~~ 220 (357)
.--|++.++--. +.+...+.+.+.+-++||..+
T Consensus 91 l~tIqR~FliDS~-----al~~~~~~i~~~~PD~IEiLP 124 (172)
T d1vkfa_ 91 IPAVLRFFALDSK-----AVERGIEQIETLGVDVVEVLP 124 (172)
T ss_dssp CCEEEEEECCSHH-----HHHHHHHHHHHHTCSEEEEES
T ss_pred CeEEEEEEeeehH-----HHHHHHHHHhhcCCCEEEECC
Confidence 245677665322 345556666666778888765
No 7
>d1x4ka2 g.39.1.3 (A:8-34) Four and a half LIM domains protein 2, FHL2 {Human (Homo sapiens) [TaxId: 9606]}
Probab=9.55 E-value=40 Score=18.95 Aligned_cols=8 Identities=38% Similarity=0.746 Sum_probs=5.7
Q ss_pred ceeecCCC
Q 018370 15 LQILSGSR 22 (357)
Q Consensus 15 ~~~~~~~~ 22 (357)
-.||||+|
T Consensus 6 ktiMPGsr 13 (27)
T d1x4ka2 6 KTIMPGTR 13 (27)
T ss_dssp CCCCSSSC
T ss_pred ccccCCce
Confidence 35788887
No 8
>d1c9fa_ d.15.2.1 (A:) Caspase-activated DNase (CAD), DFF40, N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}
Probab=8.59 E-value=43 Score=24.17 Aligned_cols=13 Identities=8% Similarity=0.227 Sum_probs=9.9
Q ss_pred CcccCCcchhhhhc
Q 018370 281 KNCIADEHYLPTFF 294 (357)
Q Consensus 281 ~t~~pDE~yf~TlL 294 (357)
-|.+ ||-||+||=
T Consensus 55 GT~V-dEeYF~tLp 67 (87)
T d1c9fa_ 55 GTEV-TDDCFPGLP 67 (87)
T ss_dssp TCCB-CTTSCSSCC
T ss_pred CcEe-cHHHHhcCC
Confidence 3455 889999986
No 9
>d1d4ta_ d.93.1.1 (A:) The Xlp protein Sap {Human (Homo sapiens) [TaxId: 9606]}
Probab=8.51 E-value=1e+02 Score=21.45 Aligned_cols=22 Identities=36% Similarity=0.431 Sum_probs=18.4
Q ss_pred ccccccCcchHHHHHHHHHHHH
Q 018370 158 SEQVVWGRISMVDAERRLLANA 179 (357)
Q Consensus 158 s~~V~WG~~S~V~Ael~LL~~A 179 (357)
+.+-.||.+|.-+||..|.+..
T Consensus 3 ~~pwyhG~isR~eAe~lL~~~~ 24 (104)
T d1d4ta_ 3 AVAVYHGKISRETGEKLLLATG 24 (104)
T ss_dssp TCTTBCCSCCHHHHHHHHHHHC
T ss_pred cCCccccCCCHHHHHHHHhhCC
Confidence 3567899999999999888764
No 10
>d1lzia_ c.68.1.9 (A:) Glycosyltransferase A catalytic domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=8.07 E-value=1.6e+02 Score=25.33 Aligned_cols=117 Identities=15% Similarity=0.175 Sum_probs=56.9
Q ss_pred cCCCCCCCCCCChHHHHHhhhhhhhcCCCCCCCCCCcEEEEEEeCCCCChHHHHHHHHccc------CCCceEEEEeCCC
Q 018370 69 EWLPPSPVRELTDNEIASRVVIRDILNTPAVRSKNSKVAFLFLTPGPLPFEKLWDKFFHGH------EGRFSVYVHASRD 142 (357)
Q Consensus 69 ~~~~~~~~~~~~d~el~~~~~~~~~~~~~~~~~~~~KIAfLiLah~~l~~~~Lw~~f~~~~------~~~~sIYIHvD~k 142 (357)
.|+.|.....-=|.+++.+.- .+++-.||.++.|-|. ..+.++.|.+.. +-.-.+||=.|..
T Consensus 27 ~w~apivwegt~~~~~l~~~~----------~~~~~tIgl~vfATGk--Y~~Fl~~f~eSaek~Fmpg~~v~yyvFTD~~ 94 (283)
T d1lzia_ 27 PWLAPIVWEGTFNIDILNEQF----------RLQNTTIGLTVFAIKK--YVAFLKLFLETAEKHFMVGHRVHYYVFTDQP 94 (283)
T ss_dssp TTSCBEECTTSCCHHHHHHHH----------HTTTCEEEEEEEECGG--GGGGHHHHHHHHHHHBSTTSEEEEEEEESCG
T ss_pred CCcCcEeecCcCCHHHHHHHH----------hhCCceEEEEEEEeCh--HHHHHHHHHHHHHHhcCCCCeeEEEEEECCC
Confidence 899777777766777777642 3577889999999887 233444444431 2234678999975
Q ss_pred CCCCCccceeeccccc----cccccCcchHHHHHHHHH---HHHhcCCCCCEEEEecCCcccCC
Q 018370 143 KPVHFSRYFINREIRS----EQVVWGRISMVDAERRLL---ANALKDPDNQHFVLLSDSCVPLH 199 (357)
Q Consensus 143 ~~~~~~~~F~~r~I~s----~~V~WG~~S~V~Ael~LL---~~AL~d~~~~yfvLLSgsdiPL~ 199 (357)
...+.-..-.++++.- ..-.|-.+||..-+.-+- +..+. +.||++.+-....-..
T Consensus 95 ~~vP~i~l~~~~~v~v~~i~~~~~Wp~iTL~R~~~i~k~i~~~~~~--e~DyLf~~DaDm~f~~ 156 (283)
T d1lzia_ 95 AAVPRVTLGTGRQLSVLEVRAYKRWQDVSMRRMEMISDFCERRFLS--EVDYLVCVDVDMEFRD 156 (283)
T ss_dssp GGSCCCCCCTTEEEEEEECC-------------------CHHHHHH--HCSEEEEECSSEEECS
T ss_pred ccCCccccccCCceEEEeccCCCCCchHHHHHHHHHHHHHHHHhhh--cCCEEEEeecceEEec
Confidence 4432211112222211 123588888866554322 22333 4677777765554433
Done!