Query 018372
Match_columns 357
No_of_seqs 210 out of 1180
Neff 4.4
Searched_HMMs 46136
Date Fri Mar 29 08:28:00 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018372.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/018372hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK14143 heat shock protein Gr 100.0 2E-46 4.4E-51 352.7 21.2 164 176-352 67-230 (238)
2 PRK14148 heat shock protein Gr 100.0 2E-46 4.2E-51 343.9 20.4 156 176-345 40-195 (195)
3 PRK14161 heat shock protein Gr 100.0 3E-46 6.5E-51 338.4 19.9 160 175-346 18-178 (178)
4 PRK14153 heat shock protein Gr 100.0 4.6E-46 1E-50 341.1 20.1 157 178-348 35-191 (194)
5 PRK14141 heat shock protein Gr 100.0 6E-46 1.3E-50 343.7 20.1 157 185-349 40-196 (209)
6 PRK14151 heat shock protein Gr 100.0 9.2E-46 2E-50 334.7 19.4 148 184-344 28-175 (176)
7 PRK14147 heat shock protein Gr 100.0 8.9E-46 1.9E-50 333.6 19.1 146 184-345 26-171 (172)
8 PRK14155 heat shock protein Gr 100.0 1E-45 2.2E-50 342.0 19.9 155 184-349 21-176 (208)
9 PRK14145 heat shock protein Gr 100.0 1.2E-45 2.6E-50 338.9 19.9 149 179-344 48-196 (196)
10 PRK14158 heat shock protein Gr 100.0 1.2E-45 2.5E-50 338.5 19.2 152 178-344 42-194 (194)
11 PRK14163 heat shock protein Gr 100.0 2.3E-45 5E-50 340.6 20.2 150 181-351 45-194 (214)
12 PRK14140 heat shock protein Gr 100.0 2.9E-45 6.3E-50 335.2 20.1 153 178-344 39-191 (191)
13 PRK14162 heat shock protein Gr 100.0 4.1E-45 8.9E-50 334.9 19.7 149 182-344 45-194 (194)
14 PRK14139 heat shock protein Gr 100.0 4.2E-45 9.2E-50 332.7 19.5 146 183-345 39-184 (185)
15 PRK14160 heat shock protein Gr 100.0 5.6E-45 1.2E-49 337.6 20.4 157 170-344 55-211 (211)
16 PRK14150 heat shock protein Gr 100.0 7.5E-45 1.6E-49 332.8 20.6 151 178-344 43-193 (193)
17 PRK14144 heat shock protein Gr 100.0 6.8E-45 1.5E-49 334.5 20.2 164 163-345 36-199 (199)
18 COG0576 GrpE Molecular chapero 100.0 6E-45 1.3E-49 333.2 19.2 151 183-346 43-193 (193)
19 PRK14146 heat shock protein Gr 100.0 7.4E-45 1.6E-49 337.7 19.6 152 181-346 59-214 (215)
20 PRK14159 heat shock protein Gr 100.0 1.1E-44 2.3E-49 327.9 18.3 145 185-344 32-176 (176)
21 PRK14154 heat shock protein Gr 100.0 1.8E-44 4E-49 333.5 19.8 147 184-343 60-207 (208)
22 PRK10325 heat shock protein Gr 100.0 2.1E-44 4.6E-49 330.7 19.0 139 195-346 58-196 (197)
23 PRK14149 heat shock protein Gr 100.0 3.1E-44 6.7E-49 328.4 19.0 146 185-345 45-190 (191)
24 PRK14157 heat shock protein Gr 100.0 3.6E-43 7.7E-48 328.3 18.1 141 184-345 85-225 (227)
25 KOG3003 Molecular chaperone of 100.0 5.8E-43 1.2E-47 326.3 19.2 162 179-348 74-235 (236)
26 PRK14156 heat shock protein Gr 100.0 1.5E-42 3.3E-47 314.1 18.4 155 170-344 22-177 (177)
27 PRK14142 heat shock protein Gr 100.0 1.8E-41 4E-46 315.8 17.8 144 189-352 46-190 (223)
28 PRK14164 heat shock protein Gr 100.0 1.4E-40 3E-45 309.7 16.7 138 185-345 79-217 (218)
29 cd00446 GrpE GrpE is the adeni 100.0 2.3E-39 4.9E-44 279.9 16.7 136 193-342 2-137 (137)
30 PF01025 GrpE: GrpE; InterPro 100.0 2.2E-39 4.8E-44 284.6 12.3 150 181-344 16-165 (165)
31 PF06156 DUF972: Protein of un 83.3 4.1 8.9E-05 34.8 6.4 71 174-244 13-83 (107)
32 COG4026 Uncharacterized protei 71.9 66 0.0014 31.6 11.5 68 173-242 132-199 (290)
33 PTZ00464 SNF-7-like protein; P 71.9 93 0.002 29.6 12.8 26 174-199 23-48 (211)
34 PRK13169 DNA replication intia 71.6 17 0.00036 31.4 6.8 70 172-244 11-80 (110)
35 KOG0742 AAA+-type ATPase [Post 71.5 28 0.0006 37.2 9.5 20 190-209 150-169 (630)
36 PF06120 Phage_HK97_TLTM: Tail 68.3 1E+02 0.0022 31.0 12.5 78 166-243 64-147 (301)
37 COG4467 Regulator of replicati 67.2 11 0.00024 32.8 4.8 70 173-244 12-84 (114)
38 KOG0250 DNA repair protein RAD 62.9 91 0.002 36.4 12.1 43 268-310 472-517 (1074)
39 COG0711 AtpF F0F1-type ATP syn 62.8 1.2E+02 0.0025 27.3 10.9 79 165-243 47-126 (161)
40 cd07627 BAR_Vps5p The Bin/Amph 61.9 70 0.0015 29.8 9.5 55 183-237 143-197 (216)
41 PF03938 OmpH: Outer membrane 61.6 1.1E+02 0.0023 26.5 12.0 48 195-242 81-128 (158)
42 PF14357 DUF4404: Domain of un 60.8 14 0.0003 30.3 4.1 17 273-289 69-85 (85)
43 PRK07352 F0F1 ATP synthase sub 57.9 1.4E+02 0.003 26.8 10.4 20 175-194 70-89 (174)
44 PRK14472 F0F1 ATP synthase sub 56.9 1.5E+02 0.0032 26.7 10.5 18 176-193 70-87 (175)
45 cd07664 BAR_SNX2 The Bin/Amphi 56.6 85 0.0018 30.2 9.2 54 183-236 159-212 (234)
46 cd07623 BAR_SNX1_2 The Bin/Amp 55.0 1.9E+02 0.004 27.2 11.3 51 185-235 151-201 (224)
47 COG2433 Uncharacterized conser 54.6 2.9E+02 0.0064 30.7 13.7 70 175-244 421-491 (652)
48 PRK14159 heat shock protein Gr 53.5 1.9E+02 0.0041 26.9 12.0 66 163-228 21-86 (176)
49 PRK00409 recombination and DNA 53.5 1.6E+02 0.0035 33.0 12.0 10 316-325 650-659 (782)
50 PF12761 End3: Actin cytoskele 53.3 80 0.0017 30.0 8.3 24 171-194 98-121 (195)
51 PRK05759 F0F1 ATP synthase sub 53.3 1.5E+02 0.0033 25.7 10.5 119 174-307 29-148 (156)
52 TIGR03321 alt_F1F0_F0_B altern 52.0 2.2E+02 0.0047 27.1 13.1 102 198-308 91-196 (246)
53 PF13805 Pil1: Eisosome compon 51.9 2.6E+02 0.0056 27.9 11.9 59 189-247 171-229 (271)
54 PF07795 DUF1635: Protein of u 51.7 1.7E+02 0.0037 28.3 10.2 55 170-228 2-60 (214)
55 PF09457 RBD-FIP: FIP domain ; 50.8 64 0.0014 24.1 5.8 31 170-200 1-31 (48)
56 PF15290 Syntaphilin: Golgi-lo 49.0 3E+02 0.0065 27.9 13.5 68 172-242 71-139 (305)
57 PF03194 LUC7: LUC7 N_terminus 48.4 93 0.002 30.2 8.2 44 225-287 192-235 (254)
58 CHL00019 atpF ATP synthase CF0 48.0 2.1E+02 0.0047 25.9 10.4 119 174-307 49-168 (184)
59 PF12329 TMF_DNA_bd: TATA elem 47.7 87 0.0019 24.9 6.6 20 176-195 5-24 (74)
60 PRK02793 phi X174 lysis protei 47.5 1.4E+02 0.0031 23.7 8.6 45 172-216 4-48 (72)
61 PRK14127 cell division protein 46.6 1E+02 0.0022 26.6 7.3 47 168-214 22-68 (109)
62 KOG2911 Uncharacterized conser 45.9 4E+02 0.0087 28.4 13.2 40 165-204 229-268 (439)
63 PRK14150 heat shock protein Gr 45.8 1.7E+02 0.0036 27.5 9.1 34 195-228 46-79 (193)
64 KOG0971 Microtubule-associated 45.8 5.7E+02 0.012 30.1 17.9 73 170-243 225-317 (1243)
65 PLN03217 transcription factor 45.5 1.2E+02 0.0026 25.6 7.2 56 168-223 16-71 (93)
66 KOG0796 Spliceosome subunit [R 45.4 2.1E+02 0.0046 29.2 10.3 95 177-290 123-234 (319)
67 PRK04406 hypothetical protein; 45.4 1.6E+02 0.0035 23.6 8.4 46 171-216 6-51 (75)
68 PF09325 Vps5: Vps5 C terminal 45.1 1.8E+02 0.0039 26.6 9.2 53 185-237 165-217 (236)
69 KOG1962 B-cell receptor-associ 44.8 56 0.0012 31.5 5.9 34 182-215 178-211 (216)
70 KOG2856 Adaptor protein PACSIN 44.8 3.7E+02 0.008 28.4 12.0 61 160-224 165-225 (472)
71 TIGR03185 DNA_S_dndD DNA sulfu 44.6 4.5E+02 0.0097 28.6 14.4 35 179-213 431-465 (650)
72 PRK13460 F0F1 ATP synthase sub 44.1 2.4E+02 0.0052 25.3 10.4 119 174-307 41-160 (173)
73 PF09006 Surfac_D-trimer: Lung 43.8 60 0.0013 24.2 4.6 27 186-212 2-28 (46)
74 PRK06569 F0F1 ATP synthase sub 43.8 1.9E+02 0.0042 26.4 9.0 71 168-242 54-125 (155)
75 TIGR01069 mutS2 MutS2 family p 43.3 2.9E+02 0.0062 31.1 12.0 9 316-324 638-646 (771)
76 TIGR02894 DNA_bind_RsfA transc 43.2 2.5E+02 0.0054 26.0 9.6 50 167-216 78-137 (161)
77 PRK11637 AmiB activator; Provi 42.3 1.2E+02 0.0025 31.1 8.2 46 176-221 89-134 (428)
78 PRK08476 F0F1 ATP synthase sub 41.2 2.5E+02 0.0053 24.6 11.2 69 172-240 55-124 (141)
79 KOG3990 Uncharacterized conser 40.9 2.2E+02 0.0047 28.6 9.3 60 172-236 228-287 (305)
80 PRK00409 recombination and DNA 40.7 2.8E+02 0.006 31.2 11.4 19 192-210 539-557 (782)
81 COG1579 Zn-ribbon protein, pos 40.1 2E+02 0.0044 28.1 9.0 46 178-223 112-157 (239)
82 KOG0995 Centromere-associated 39.6 3.8E+02 0.0082 29.5 11.6 36 267-302 370-406 (581)
83 cd07665 BAR_SNX1 The Bin/Amphi 39.6 2.7E+02 0.0058 26.9 9.7 51 183-233 159-209 (234)
84 PRK13453 F0F1 ATP synthase sub 39.3 2.9E+02 0.0063 24.9 10.7 119 174-307 43-162 (173)
85 PF06810 Phage_GP20: Phage min 39.2 2.9E+02 0.0063 24.9 9.5 60 171-230 29-92 (155)
86 PRK14163 heat shock protein Gr 38.9 3.6E+02 0.0079 25.9 11.5 39 190-228 65-103 (214)
87 PRK14155 heat shock protein Gr 38.6 3.1E+02 0.0068 26.1 9.9 30 191-220 39-68 (208)
88 PRK14157 heat shock protein Gr 38.3 3.8E+02 0.0083 26.0 11.7 49 173-221 85-133 (227)
89 TIGR03752 conj_TIGR03752 integ 37.5 3.4E+02 0.0074 29.2 10.8 47 171-217 61-107 (472)
90 cd07622 BAR_SNX4 The Bin/Amphi 37.5 3.5E+02 0.0076 25.3 10.7 66 170-235 127-192 (201)
91 PRK04325 hypothetical protein; 37.4 2.1E+02 0.0046 22.8 8.4 44 172-215 5-48 (74)
92 PF07798 DUF1640: Protein of u 37.2 3E+02 0.0065 24.9 9.3 36 190-225 73-108 (177)
93 PRK02119 hypothetical protein; 37.0 2.1E+02 0.0046 22.7 8.5 47 172-218 5-51 (73)
94 PRK00888 ftsB cell division pr 37.0 1.4E+02 0.0029 25.3 6.5 27 184-210 35-61 (105)
95 PF10481 CENP-F_N: Cenp-F N-te 36.8 4.7E+02 0.01 26.5 12.0 77 167-246 10-86 (307)
96 PRK08475 F0F1 ATP synthase sub 36.6 3.2E+02 0.0069 24.6 10.0 70 165-234 63-144 (167)
97 PRK14162 heat shock protein Gr 36.5 3.6E+02 0.0079 25.4 9.9 28 190-217 64-91 (194)
98 PF11559 ADIP: Afadin- and alp 36.4 2.5E+02 0.0054 24.5 8.3 48 174-221 71-118 (151)
99 TIGR01069 mutS2 MutS2 family p 36.3 3.7E+02 0.0081 30.3 11.5 26 192-217 527-552 (771)
100 KOG4196 bZIP transcription fac 36.3 1.5E+02 0.0033 26.7 6.8 26 188-213 86-111 (135)
101 PRK14473 F0F1 ATP synthase sub 35.9 3.1E+02 0.0067 24.2 10.6 119 174-307 33-152 (164)
102 PRK11637 AmiB activator; Provi 35.7 2.4E+02 0.0053 28.8 9.3 42 176-217 82-123 (428)
103 PF10146 zf-C4H2: Zinc finger- 35.2 4.2E+02 0.0091 25.6 11.5 67 178-245 34-103 (230)
104 COG2433 Uncharacterized conser 35.0 4.7E+02 0.01 29.2 11.5 38 176-213 429-466 (652)
105 PRK13455 F0F1 ATP synthase sub 34.9 3.5E+02 0.0075 24.5 11.0 119 174-307 52-171 (184)
106 PF06409 NPIP: Nuclear pore co 34.8 1.1E+02 0.0024 30.2 6.2 43 178-220 129-171 (265)
107 PF04977 DivIC: Septum formati 34.3 1.6E+02 0.0034 22.3 6.0 24 186-209 27-50 (80)
108 PF08336 P4Ha_N: Prolyl 4-Hydr 33.7 3.1E+02 0.0067 23.6 9.3 67 172-238 18-94 (134)
109 PF04740 LXG: LXG domain of WX 32.8 3.7E+02 0.008 24.2 14.1 80 169-248 3-82 (204)
110 PRK14158 heat shock protein Gr 32.4 4.4E+02 0.0095 24.9 10.2 30 191-220 66-95 (194)
111 PF04102 SlyX: SlyX; InterPro 32.1 2.4E+02 0.0053 21.9 7.6 47 175-221 3-49 (69)
112 PRK09039 hypothetical protein; 32.1 3.9E+02 0.0084 27.0 10.0 25 186-210 140-164 (343)
113 PF01025 GrpE: GrpE; InterPro 31.9 3.2E+02 0.0069 23.9 8.3 44 170-216 19-62 (165)
114 PF06698 DUF1192: Protein of u 31.8 1.9E+02 0.0041 22.5 6.0 28 166-193 18-45 (59)
115 PRK13410 molecular chaperone D 31.8 3.8E+02 0.0082 29.5 10.5 16 167-182 500-515 (668)
116 COG1196 Smc Chromosome segrega 31.2 7.5E+02 0.016 29.0 13.2 80 184-287 950-1029(1163)
117 PF11559 ADIP: Afadin- and alp 31.1 3.4E+02 0.0074 23.6 8.3 14 194-207 56-69 (151)
118 PF04012 PspA_IM30: PspA/IM30 31.1 4.2E+02 0.0092 24.4 9.4 37 176-212 98-134 (221)
119 PF04977 DivIC: Septum formati 31.1 1.9E+02 0.0042 21.9 6.1 25 178-202 26-50 (80)
120 PRK14160 heat shock protein Gr 31.0 4.8E+02 0.01 25.0 11.1 44 186-229 57-103 (211)
121 PRK00846 hypothetical protein; 30.5 3E+02 0.0065 22.5 8.5 50 172-221 9-58 (77)
122 PRK14140 heat shock protein Gr 30.3 4.7E+02 0.01 24.6 9.9 30 191-220 63-92 (191)
123 PF12777 MT: Microtubule-bindi 29.8 5.8E+02 0.013 25.5 11.7 81 168-248 14-103 (344)
124 PF13870 DUF4201: Domain of un 29.4 4.2E+02 0.0091 23.7 9.7 10 176-185 56-65 (177)
125 PRK14145 heat shock protein Gr 29.0 5E+02 0.011 24.6 9.7 32 191-222 71-102 (196)
126 COG3883 Uncharacterized protei 29.0 4E+02 0.0086 26.5 9.1 50 173-222 56-105 (265)
127 PRK14164 heat shock protein Gr 29.0 5.2E+02 0.011 24.9 9.7 48 169-219 77-124 (218)
128 PLN02890 geranyl diphosphate s 28.7 32 0.0007 35.9 1.7 67 1-67 1-69 (422)
129 PRK00295 hypothetical protein; 28.2 2.9E+02 0.0064 21.6 7.3 40 177-216 6-45 (68)
130 PRK14474 F0F1 ATP synthase sub 28.1 5.5E+02 0.012 24.7 11.0 38 199-236 92-129 (250)
131 KOG4348 Adaptor protein CMS/SE 27.9 2.7E+02 0.0059 30.0 8.2 56 168-223 568-623 (627)
132 smart00338 BRLZ basic region l 27.7 2.5E+02 0.0053 21.2 6.0 35 177-211 27-61 (65)
133 PF07795 DUF1635: Protein of u 27.7 2.4E+02 0.0051 27.3 7.1 46 172-217 15-60 (214)
134 cd00632 Prefoldin_beta Prefold 27.4 2.8E+02 0.006 22.9 6.8 35 181-215 68-102 (105)
135 PRK14147 heat shock protein Gr 27.2 5E+02 0.011 23.9 11.8 32 190-221 43-74 (172)
136 PF10211 Ax_dynein_light: Axon 26.5 5.2E+02 0.011 23.9 9.1 35 182-216 126-160 (189)
137 PRK00736 hypothetical protein; 26.5 3.2E+02 0.0069 21.4 8.1 44 177-220 6-49 (68)
138 PF04102 SlyX: SlyX; InterPro 26.5 3.1E+02 0.0067 21.3 6.7 44 172-215 7-50 (69)
139 PF09726 Macoilin: Transmembra 25.9 9.8E+02 0.021 26.9 13.4 41 172-212 541-581 (697)
140 PRK14143 heat shock protein Gr 25.9 6.2E+02 0.014 24.6 13.1 38 191-228 93-130 (238)
141 cd07596 BAR_SNX The Bin/Amphip 25.7 4.7E+02 0.01 23.1 9.2 56 183-238 145-200 (218)
142 PF03938 OmpH: Outer membrane 25.7 4.3E+02 0.0094 22.7 12.1 20 274-293 116-135 (158)
143 COG4942 Membrane-bound metallo 25.6 6E+02 0.013 27.0 10.1 39 175-213 58-96 (420)
144 PF03357 Snf7: Snf7; InterPro 25.5 4.4E+02 0.0094 22.7 9.0 25 264-288 92-121 (171)
145 COG1579 Zn-ribbon protein, pos 25.1 6.6E+02 0.014 24.6 13.4 37 185-221 47-83 (239)
146 PRK10361 DNA recombination pro 25.1 7.1E+02 0.015 26.8 10.7 57 188-244 97-157 (475)
147 PRK04325 hypothetical protein; 25.0 3.6E+02 0.0077 21.5 7.3 44 171-214 11-54 (74)
148 PRK14153 heat shock protein Gr 24.9 5E+02 0.011 24.5 8.7 30 190-219 58-87 (194)
149 cd00632 Prefoldin_beta Prefold 24.9 2.6E+02 0.0055 23.1 6.1 36 174-209 68-103 (105)
150 TIGR02169 SMC_prok_A chromosom 24.8 6.4E+02 0.014 28.4 11.0 21 267-287 1018-1038(1164)
151 COG1322 Predicted nuclease of 24.5 8.8E+02 0.019 25.8 14.3 67 174-240 75-141 (448)
152 PRK04406 hypothetical protein; 24.4 3.7E+02 0.0081 21.5 7.3 42 172-213 14-55 (75)
153 PRK13729 conjugal transfer pil 24.4 1.8E+02 0.0038 31.3 6.1 6 299-304 172-177 (475)
154 PF11629 Mst1_SARAH: C termina 24.3 2.8E+02 0.0061 21.0 5.5 30 167-199 6-35 (49)
155 PF06156 DUF972: Protein of un 24.2 4.6E+02 0.0099 22.4 8.8 41 170-210 2-42 (107)
156 PF00170 bZIP_1: bZIP transcri 24.2 3.1E+02 0.0068 20.6 6.9 32 178-209 28-59 (64)
157 PF09304 Cortex-I_coil: Cortex 24.1 4.2E+02 0.0091 23.1 7.3 47 168-214 29-75 (107)
158 PF08429 PLU-1: PLU-1-like pro 24.1 2.8E+02 0.006 27.2 7.2 18 165-182 79-96 (335)
159 COG4026 Uncharacterized protei 24.0 3.9E+02 0.0084 26.5 7.9 18 186-203 159-176 (290)
160 PRK10869 recombination and rep 24.0 4.8E+02 0.01 28.1 9.4 27 215-241 362-388 (553)
161 PF06005 DUF904: Protein of un 24.0 3.8E+02 0.0082 21.4 8.2 53 170-222 19-71 (72)
162 PF08172 CASP_C: CASP C termin 23.7 3E+02 0.0066 26.8 7.2 40 173-212 90-129 (248)
163 TIGR02894 DNA_bind_RsfA transc 23.5 5E+02 0.011 24.1 8.1 41 175-215 110-150 (161)
164 cd07679 F-BAR_PACSIN2 The F-BA 23.2 7.4E+02 0.016 24.5 10.4 69 165-237 161-235 (258)
165 PF05529 Bap31: B-cell recepto 23.1 1.4E+02 0.0029 27.2 4.5 30 186-215 157-186 (192)
166 PRK00295 hypothetical protein; 22.4 3.9E+02 0.0084 20.9 8.1 45 171-215 7-51 (68)
167 PF05529 Bap31: B-cell recepto 22.3 1.9E+02 0.0042 26.2 5.4 29 178-206 163-191 (192)
168 PF05667 DUF812: Protein of un 22.3 4.8E+02 0.01 28.6 9.1 35 173-207 332-366 (594)
169 PRK00736 hypothetical protein; 21.9 4E+02 0.0086 20.9 7.3 44 171-214 7-50 (68)
170 PRK02793 phi X174 lysis protei 21.8 4.1E+02 0.0089 21.0 7.4 45 171-215 10-54 (72)
171 PF12240 Angiomotin_C: Angiomo 21.8 2.1E+02 0.0045 27.5 5.5 33 169-201 57-89 (205)
172 PRK02119 hypothetical protein; 21.7 4.2E+02 0.009 21.1 7.3 43 172-214 12-54 (73)
173 PRK14148 heat shock protein Gr 21.7 6.9E+02 0.015 23.6 9.7 31 191-221 66-96 (195)
174 PF08317 Spc7: Spc7 kinetochor 21.5 3E+02 0.0066 27.3 6.9 15 230-244 254-268 (325)
175 cd04766 HTH_HspR Helix-Turn-He 21.3 2E+02 0.0042 23.0 4.6 20 195-214 70-89 (91)
176 PLN03184 chloroplast Hsp70; Pr 21.2 8.7E+02 0.019 26.7 10.9 73 167-244 537-609 (673)
177 PF11932 DUF3450: Protein of u 21.0 7.2E+02 0.016 23.6 11.6 72 171-244 44-115 (251)
178 PF13864 Enkurin: Calmodulin-b 20.9 3.2E+02 0.007 22.4 5.9 41 181-221 42-82 (98)
179 COG0497 RecN ATPase involved i 20.8 6.2E+02 0.013 27.8 9.5 32 186-217 345-376 (557)
180 PF14584 DUF4446: Protein of u 20.8 3.2E+02 0.0069 24.7 6.3 54 268-324 64-117 (151)
181 TIGR02338 gimC_beta prefoldin, 20.7 4.5E+02 0.0097 22.0 6.8 34 182-215 73-106 (110)
182 PF07926 TPR_MLP1_2: TPR/MLP1/ 20.6 5.5E+02 0.012 22.1 8.4 14 206-219 96-109 (132)
183 PRK06231 F0F1 ATP synthase sub 20.6 7E+02 0.015 23.3 12.0 31 204-234 140-170 (205)
184 PF10267 Tmemb_cc2: Predicted 20.4 7.7E+02 0.017 25.8 9.8 19 223-241 294-312 (395)
185 KOG3647 Predicted coiled-coil 20.3 3.7E+02 0.0081 27.2 7.1 25 191-215 134-158 (338)
186 PF04111 APG6: Autophagy prote 20.3 8.7E+02 0.019 24.2 11.9 31 266-296 168-202 (314)
187 PHA02109 hypothetical protein 20.2 3.1E+02 0.0066 26.2 6.2 41 166-206 177-223 (233)
No 1
>PRK14143 heat shock protein GrpE; Provisional
Probab=100.00 E-value=2e-46 Score=352.71 Aligned_cols=164 Identities=28% Similarity=0.395 Sum_probs=148.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhhhhhhhcccCCC
Q 018372 176 KLLKEREELLMAKNEEMKQMQDKVLRSFAEMENVKDRTIREAENSKKFAIQNFAKALLDVADNLGRASSVVKENFLKIDP 255 (357)
Q Consensus 176 klv~e~ee~L~e~~~EleelkDk~lR~~AEfEN~RKR~~rE~e~akk~Aie~f~kdLLpVlDnLERAle~~~e~~~k~d~ 255 (357)
+.+..+++.++.+++++++++++|+|++|||+|||||+.||++++++||+++|+++||||+|||+||+.++...
T Consensus 67 ~~~~~l~~el~~l~~e~~elkd~~lR~~AdfeN~RKR~~kE~e~~~~~a~~~~~~~lLpV~DnLerAl~~~~~~------ 140 (238)
T PRK14143 67 ARLAQLEQELESLKQELEELNSQYMRIAADFDNFRKRTSREQEDLRLQLKCNTLSEILPVVDNFERARQQLKPE------ 140 (238)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhccccc------
Confidence 33455566677888999999999999999999999999999999999999999999999999999999865321
Q ss_pred CCCCCCchhhHHHHHHHHHHHHHHHHHHHHhCCCeeeCCCCCCCCccccceeeeccCCCCCCCceEEEeeccceeCCEee
Q 018372 256 SNDTAGAVPLLKSLLEGVEMTEKQLGEVFKKFGVEKFDPINEPFDPHRHNAMFQLPDNSKPPGTVAHVLKSGYTLYERVI 335 (357)
Q Consensus 256 s~d~a~~n~~lksl~eGVeMi~kqL~~vL~k~GVe~IepvGe~FDPnlHEAV~~v~~~e~e~gtVveVlqkGY~L~dRVL 335 (357)
......|.+||+||+++|.++|+++||++|+++|++|||++|+||++++++++++|||++|+|+||+||||||
T Consensus 141 -------~~~~~~l~~Gve~i~k~l~~~L~k~GV~~i~~~G~~FDP~~HEAv~~~~~~~~~~gtVv~v~qkGY~l~~RVL 213 (238)
T PRK14143 141 -------GEEAQALHRSYQGLYKQLVDVLKRLGVSPMRVVGQEFDPNLHEAVLREPSDEHPEDVVLEELQRGYHLGGRVL 213 (238)
T ss_pred -------chhHHHHHHHHHHHHHHHHHHHHHCCCeeeCCCCCCCChHHhheeeeecCCCCCcCeEEEEeeCCceeCCEec
Confidence 0123679999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eecEEEeecCCCCcccc
Q 018372 336 RPAEVGVTQAVENDRAE 352 (357)
Q Consensus 336 RPA~VvVsK~~e~~~~~ 352 (357)
|||+|+|++++....++
T Consensus 214 RpA~V~Vsk~~~~~~~~ 230 (238)
T PRK14143 214 RHAMVKVSMGPGPSSPA 230 (238)
T ss_pred ccceEEECCCCCCCCCC
Confidence 99999999988755543
No 2
>PRK14148 heat shock protein GrpE; Provisional
Probab=100.00 E-value=2e-46 Score=343.86 Aligned_cols=156 Identities=35% Similarity=0.567 Sum_probs=144.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhhhhhhhcccCCC
Q 018372 176 KLLKEREELLMAKNEEMKQMQDKVLRSFAEMENVKDRTIREAENSKKFAIQNFAKALLDVADNLGRASSVVKENFLKIDP 255 (357)
Q Consensus 176 klv~e~ee~L~e~~~EleelkDk~lR~~AEfEN~RKR~~rE~e~akk~Aie~f~kdLLpVlDnLERAle~~~e~~~k~d~ 255 (357)
+.+..+++.++.+++++++++++|+|++|||+|||||++||++++++||+++|+++||||+|||+||+.+.+.
T Consensus 40 ~e~~~l~~~l~~l~~e~~elkd~~lR~~Ae~eN~rKR~~rE~e~~~~~a~~~~~~~LLpV~DnlerAl~~~~~------- 112 (195)
T PRK14148 40 EQLERAKDTIKELEDSCDQFKDEALRAKAEMENIRKRAERDVSNARKFGIEKFAKELLPVIDSIEQALKHEVK------- 112 (195)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHhcccc-------
Confidence 4455566778888999999999999999999999999999999999999999999999999999999986432
Q ss_pred CCCCCCchhhHHHHHHHHHHHHHHHHHHHHhCCCeeeCCCCCCCCccccceeeeccCCCCCCCceEEEeeccceeCCEee
Q 018372 256 SNDTAGAVPLLKSLLEGVEMTEKQLGEVFKKFGVEKFDPINEPFDPHRHNAMFQLPDNSKPPGTVAHVLKSGYTLYERVI 335 (357)
Q Consensus 256 s~d~a~~n~~lksl~eGVeMi~kqL~~vL~k~GVe~IepvGe~FDPnlHEAV~~v~~~e~e~gtVveVlqkGY~L~dRVL 335 (357)
.....+|++||+||+++|.++|+++||++|+|+|++|||++|+||++++++++++|+|++|+|+||+||||||
T Consensus 113 -------~~~~~~l~~Gv~mi~k~l~~vL~k~Gv~~I~~~G~~FDP~~HEAv~~~~~~~~~~gtVv~V~qkGY~l~dRVL 185 (195)
T PRK14148 113 -------LEEAIAMKEGIELTAKMLVDILKKNGVEELDPKGEKFDPNLHEAMAMIPNPEFEDNTIFDVFQKGYMLNGRIV 185 (195)
T ss_pred -------chhHHHHHHHHHHHHHHHHHHHHHCCCEEeCCCCCCCChhHhheeeeeCCCCCCcCEEEEEeeCCcEeCCEee
Confidence 0124689999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eecEEEeecC
Q 018372 336 RPAEVGVTQA 345 (357)
Q Consensus 336 RPA~VvVsK~ 345 (357)
|||+|+|++.
T Consensus 186 RpA~V~Vak~ 195 (195)
T PRK14148 186 RAAKVVIVKN 195 (195)
T ss_pred eccEEEeCCC
Confidence 9999999873
No 3
>PRK14161 heat shock protein GrpE; Provisional
Probab=100.00 E-value=3e-46 Score=338.42 Aligned_cols=160 Identities=32% Similarity=0.575 Sum_probs=146.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhhhhhhhcccCC
Q 018372 175 VKLLKEREELLMAKNEEMKQMQDKVLRSFAEMENVKDRTIREAENSKKFAIQNFAKALLDVADNLGRASSVVKENFLKID 254 (357)
Q Consensus 175 ~klv~e~ee~L~e~~~EleelkDk~lR~~AEfEN~RKR~~rE~e~akk~Aie~f~kdLLpVlDnLERAle~~~e~~~k~d 254 (357)
.+.++..++.++.+++++++++++|+|++|||+|||||+++|++++++||+++|+++||||+|||+||+.+.+.+
T Consensus 18 ~~~~~~~~~ei~~l~~e~~elkd~~lR~~AefeN~rkR~~ke~~~~~~~a~~~~~~~LLpv~DnlerAl~~~~~~----- 92 (178)
T PRK14161 18 EEIVETANPEITALKAEIEELKDKLIRTTAEIDNTRKRLEKARDEAKDYAIATFAKELLNVSDNLSRALAHKPAN----- 92 (178)
T ss_pred HhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHhcCccc-----
Confidence 355677777888999999999999999999999999999999999999999999999999999999999875421
Q ss_pred CCCCCCCchhhHHHHHHHHHHHHHHHHHHHHhCCCeeeCC-CCCCCCccccceeeeccCCCCCCCceEEEeeccceeCCE
Q 018372 255 PSNDTAGAVPLLKSLLEGVEMTEKQLGEVFKKFGVEKFDP-INEPFDPHRHNAMFQLPDNSKPPGTVAHVLKSGYTLYER 333 (357)
Q Consensus 255 ~s~d~a~~n~~lksl~eGVeMi~kqL~~vL~k~GVe~Iep-vGe~FDPnlHEAV~~v~~~e~e~gtVveVlqkGY~L~dR 333 (357)
.+..+.++++||+||+++|.++|+++||++|+| +|++|||++||||++++++++++|||++|+|+||+||||
T Consensus 93 -------~~~~~~~~~~Gv~mi~k~l~~vL~~~Gv~~I~~~~G~~FDP~~HEAv~~~~~~~~~~gtVi~v~q~GY~l~dR 165 (178)
T PRK14161 93 -------SDVEVTNIIAGVQMTKDELDKVFHKHHIEEIKPEIGSMFDYNLHNAISQIEHPDHAPNSIITLMQSGYKIRDR 165 (178)
T ss_pred -------cchhHHHHHHHHHHHHHHHHHHHHHCCCEEecCCCCCCCChHHhhhheeeCCCCCCcCEEEEEeeCCcEeCCE
Confidence 112357899999999999999999999999999 699999999999999999999999999999999999999
Q ss_pred eeeecEEEeecCC
Q 018372 334 VIRPAEVGVTQAV 346 (357)
Q Consensus 334 VLRPA~VvVsK~~ 346 (357)
|||||+|+|+++|
T Consensus 166 VLRpA~V~Vak~~ 178 (178)
T PRK14161 166 LLRPATVQVVKKP 178 (178)
T ss_pred eecCceEEeCCCC
Confidence 9999999999864
No 4
>PRK14153 heat shock protein GrpE; Provisional
Probab=100.00 E-value=4.6e-46 Score=341.12 Aligned_cols=157 Identities=34% Similarity=0.583 Sum_probs=144.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhhhhhhhcccCCCCC
Q 018372 178 LKEREELLMAKNEEMKQMQDKVLRSFAEMENVKDRTIREAENSKKFAIQNFAKALLDVADNLGRASSVVKENFLKIDPSN 257 (357)
Q Consensus 178 v~e~ee~L~e~~~EleelkDk~lR~~AEfEN~RKR~~rE~e~akk~Aie~f~kdLLpVlDnLERAle~~~e~~~k~d~s~ 257 (357)
+......+..+++++++++++|+|++|||+|||||+++|++++++||+++|+++||||+|+|+||+++.+.
T Consensus 35 ~~~~~~ei~~l~~e~~elkd~~lR~~AEfeN~rKR~~kE~e~~~~~a~~~~~~~LLpv~DnLerAl~~~~~--------- 105 (194)
T PRK14153 35 DSTADSETEKCREEIESLKEQLFRLAAEFDNFRKRTAREMEENRKFVLEQVLLDLLEVTDNFERALESART--------- 105 (194)
T ss_pred cccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHhcccc---------
Confidence 34445566778899999999999999999999999999999999999999999999999999999986532
Q ss_pred CCCCchhhHHHHHHHHHHHHHHHHHHHHhCCCeeeCCCCCCCCccccceeeeccCCCCCCCceEEEeeccceeCCEeeee
Q 018372 258 DTAGAVPLLKSLLEGVEMTEKQLGEVFKKFGVEKFDPINEPFDPHRHNAMFQLPDNSKPPGTVAHVLKSGYTLYERVIRP 337 (357)
Q Consensus 258 d~a~~n~~lksl~eGVeMi~kqL~~vL~k~GVe~IepvGe~FDPnlHEAV~~v~~~e~e~gtVveVlqkGY~L~dRVLRP 337 (357)
+..+.+|++||+||+++|.++|+++||++|+|+|++|||++|+||++++++++++|||++|+|+||+|+||||||
T Consensus 106 -----~~~~~~l~~Gvemi~k~~~~vL~k~Gv~~I~~~G~~FDP~~HEAv~~~~~~~~~~gtVi~V~qkGY~l~dRVLRP 180 (194)
T PRK14153 106 -----AEDMNSIVEGIEMVSKQFFSILEKYGLERIECEGEEFDPHRHEAMMHVETSEVPDNTIVDVCKPGYALNSKVIRP 180 (194)
T ss_pred -----cchHHHHHHHHHHHHHHHHHHHHHCCCeeeCCCCCCCChhHhceeeeeCCCCCCcCEEEEEeeCCcEeCCEEeeC
Confidence 123578999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cEEEeecCCCC
Q 018372 338 AEVGVTQAVEN 348 (357)
Q Consensus 338 A~VvVsK~~e~ 348 (357)
|+|+|+++++.
T Consensus 181 A~V~Vak~~~e 191 (194)
T PRK14153 181 AMVSVARNPDE 191 (194)
T ss_pred cEEEECCCCcc
Confidence 99999997654
No 5
>PRK14141 heat shock protein GrpE; Provisional
Probab=100.00 E-value=6e-46 Score=343.71 Aligned_cols=157 Identities=41% Similarity=0.681 Sum_probs=141.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhhhhhhhcccCCCCCCCCCchh
Q 018372 185 LMAKNEEMKQMQDKVLRSFAEMENVKDRTIREAENSKKFAIQNFAKALLDVADNLGRASSVVKENFLKIDPSNDTAGAVP 264 (357)
Q Consensus 185 L~e~~~EleelkDk~lR~~AEfEN~RKR~~rE~e~akk~Aie~f~kdLLpVlDnLERAle~~~e~~~k~d~s~d~a~~n~ 264 (357)
|+.+++++++++++|+|++|||+|||||+++|++++++||+++|+++||||+|+|+||+++.+.. .+ ...++
T Consensus 40 i~~le~e~~elkd~~lR~~Ae~eN~RKR~~kE~e~~~~~a~~~~~~dLLpViDnLerAl~~~~~~-------~~-~~~~~ 111 (209)
T PRK14141 40 LEALKAENAELKDRMLRLAAEMENLRKRTQRDVADARAYGIAGFARDMLSVSDNLRRALDAIPAE-------AR-AAADA 111 (209)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhHHHHHHhccccc-------cc-cccch
Confidence 45567788899999999999999999999999999999999999999999999999999876421 00 01134
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhCCCeeeCCCCCCCCccccceeeeccCCCCCCCceEEEeeccceeCCEeeeecEEEeec
Q 018372 265 LLKSLLEGVEMTEKQLGEVFKKFGVEKFDPINEPFDPHRHNAMFQLPDNSKPPGTVAHVLKSGYTLYERVIRPAEVGVTQ 344 (357)
Q Consensus 265 ~lksl~eGVeMi~kqL~~vL~k~GVe~IepvGe~FDPnlHEAV~~v~~~e~e~gtVveVlqkGY~L~dRVLRPA~VvVsK 344 (357)
.+++|++||+||+++|.++|+++||++|+++|++|||++||||++++++++++|+|++|+|+||+|||||||||+|+|++
T Consensus 112 ~~~~l~eGv~mi~k~l~~vLek~GV~~I~~~Ge~FDP~~HEAv~~~~~~~~~~gtVv~V~qkGY~l~dRVLRpA~V~Vsk 191 (209)
T PRK14141 112 GLKALIEGVEMTERAMLNALERHGVKKLDPEGQKFDPNFHQAMFEVPNPDVPNNTVVQVVQAGYTIGERVLRPAMVGVAK 191 (209)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHCCCEEECCCCCCCChHHhceeeeecCCCCCcCEEEEEeeCCcEeCCEeecccEEEECC
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCc
Q 018372 345 AVEND 349 (357)
Q Consensus 345 ~~e~~ 349 (357)
++...
T Consensus 192 ~~~~~ 196 (209)
T PRK14141 192 GGPKA 196 (209)
T ss_pred CCCCc
Confidence 66433
No 6
>PRK14151 heat shock protein GrpE; Provisional
Probab=100.00 E-value=9.2e-46 Score=334.66 Aligned_cols=148 Identities=34% Similarity=0.572 Sum_probs=137.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhhhhhhhcccCCCCCCCCCch
Q 018372 184 LLMAKNEEMKQMQDKVLRSFAEMENVKDRTIREAENSKKFAIQNFAKALLDVADNLGRASSVVKENFLKIDPSNDTAGAV 263 (357)
Q Consensus 184 ~L~e~~~EleelkDk~lR~~AEfEN~RKR~~rE~e~akk~Aie~f~kdLLpVlDnLERAle~~~e~~~k~d~s~d~a~~n 263 (357)
.++.+++++++++++|+|++|||+|||||+++|++++++||+++|+++||||+|||+||+++... .+
T Consensus 28 ~i~~le~e~~el~d~~lR~~Ae~eN~rkR~~kE~e~~~~~a~~~~~~~LLpv~DnlerAl~~~~~-------------~~ 94 (176)
T PRK14151 28 RVQELEEQLAAAKDQSLRAAADLQNVRRRAEQDVEKAHKFALEKFAGDLLPVVDSLERGLELSSA-------------DD 94 (176)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHhcccc-------------cc
Confidence 45566788899999999999999999999999999999999999999999999999999986431 11
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhCCCeeeCCCCCCCCccccceeeeccCCCCCCCceEEEeeccceeCCEeeeecEEEee
Q 018372 264 PLLKSLLEGVEMTEKQLGEVFKKFGVEKFDPINEPFDPHRHNAMFQLPDNSKPPGTVAHVLKSGYTLYERVIRPAEVGVT 343 (357)
Q Consensus 264 ~~lksl~eGVeMi~kqL~~vL~k~GVe~IepvGe~FDPnlHEAV~~v~~~e~e~gtVveVlqkGY~L~dRVLRPA~VvVs 343 (357)
+.+++|++||+||+++|.++|+++||++|+++|++|||++|+||++++++++++|+|++|+|+||+|||||||||+|+|+
T Consensus 95 ~~~~~~~~Gv~mi~k~l~~~L~k~Gv~~i~~~G~~FDP~~HEAv~~~~~~~~~~gtI~~v~qkGY~l~dRvLRpA~V~Va 174 (176)
T PRK14151 95 EAIKPMREGVELTLKMFQDTLKRYQLEAVDPHGEPFNPEHHQAMAMQESADVEPNSVLKVFQKGYLLNGRLLRPAMVVVS 174 (176)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHCCCEEeCCCCCCCCHHHhhcceeeCCCCCCcCeEEEEeeCCcEECCEEecCcEEEec
Confidence 34578999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred c
Q 018372 344 Q 344 (357)
Q Consensus 344 K 344 (357)
+
T Consensus 175 k 175 (176)
T PRK14151 175 K 175 (176)
T ss_pred C
Confidence 7
No 7
>PRK14147 heat shock protein GrpE; Provisional
Probab=100.00 E-value=8.9e-46 Score=333.64 Aligned_cols=146 Identities=33% Similarity=0.508 Sum_probs=136.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhhhhhhhcccCCCCCCCCCch
Q 018372 184 LLMAKNEEMKQMQDKVLRSFAEMENVKDRTIREAENSKKFAIQNFAKALLDVADNLGRASSVVKENFLKIDPSNDTAGAV 263 (357)
Q Consensus 184 ~L~e~~~EleelkDk~lR~~AEfEN~RKR~~rE~e~akk~Aie~f~kdLLpVlDnLERAle~~~e~~~k~d~s~d~a~~n 263 (357)
.++.+++++++++++|+|++|||+|||||+++|++++++||+++|+++||||+|||+||+.+...
T Consensus 26 ~l~~l~~e~~elkd~~lR~~Ad~eN~rkR~~kE~e~~~~~a~~~~~~~lLpv~DnlerAl~~~~~--------------- 90 (172)
T PRK14147 26 EVESLRSEIALVKADALRERADLENQRKRIARDVEQARKFANEKLLGELLPVFDSLDAGLTAAGT--------------- 90 (172)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHhcccc---------------
Confidence 34567788899999999999999999999999999999999999999999999999999975421
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhCCCeeeCCCCCCCCccccceeeeccCCCCCCCceEEEeeccceeCCEeeeecEEEee
Q 018372 264 PLLKSLLEGVEMTEKQLGEVFKKFGVEKFDPINEPFDPHRHNAMFQLPDNSKPPGTVAHVLKSGYTLYERVIRPAEVGVT 343 (357)
Q Consensus 264 ~~lksl~eGVeMi~kqL~~vL~k~GVe~IepvGe~FDPnlHEAV~~v~~~e~e~gtVveVlqkGY~L~dRVLRPA~VvVs 343 (357)
...+|++||+||+++|.++|+++||++|+++|++|||++|+||++++++++++|+|++|+|+||+|||||||||+|+|+
T Consensus 91 -~~~~l~~Gv~mi~k~l~~~L~~~Gv~~i~~~G~~FDP~~HeAv~~~~~~~~~~g~Vv~v~qkGY~l~~RvLRpA~V~Va 169 (172)
T PRK14147 91 -EPSPLRDGLELTYKQLLKVAADNGLTLLDPVGQPFNPEHHQAISQGEAEGVAPGHVVQVFQKGYLLNERLLRPALVVVA 169 (172)
T ss_pred -hHHHHHHHHHHHHHHHHHHHHHCCCEEeCCCCCCCChHHhceeeeecCCCCCcCEEEEEeeCCcEeCCEeccCceEEeC
Confidence 1357999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cC
Q 018372 344 QA 345 (357)
Q Consensus 344 K~ 345 (357)
+.
T Consensus 170 k~ 171 (172)
T PRK14147 170 KQ 171 (172)
T ss_pred CC
Confidence 75
No 8
>PRK14155 heat shock protein GrpE; Provisional
Probab=100.00 E-value=1e-45 Score=341.98 Aligned_cols=155 Identities=41% Similarity=0.653 Sum_probs=141.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhhhhhhhcccCCCCCCCCCch
Q 018372 184 LLMAKNEEMKQMQDKVLRSFAEMENVKDRTIREAENSKKFAIQNFAKALLDVADNLGRASSVVKENFLKIDPSNDTAGAV 263 (357)
Q Consensus 184 ~L~e~~~EleelkDk~lR~~AEfEN~RKR~~rE~e~akk~Aie~f~kdLLpVlDnLERAle~~~e~~~k~d~s~d~a~~n 263 (357)
.|+.+++++++++++|+|++|||+|||||+++|++++++||+++|+++||||+|||+||+.+.... ..+
T Consensus 21 ~l~~le~e~~elkd~~lR~~AefeN~RKR~~kE~e~~~~~a~~~~~~~LLpV~DnLerAl~~~~~~-----------~~~ 89 (208)
T PRK14155 21 EIEALKAEVAALKDQALRYAAEAENTKRRAEREMNDARAYAIQKFARDLLGAADNLGRATAASPKD-----------SAD 89 (208)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhhHHHHHhccccc-----------ccc
Confidence 455677888999999999999999999999999999999999999999999999999999875421 012
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhCCCeeeCC-CCCCCCccccceeeeccCCCCCCCceEEEeeccceeCCEeeeecEEEe
Q 018372 264 PLLKSLLEGVEMTEKQLGEVFKKFGVEKFDP-INEPFDPHRHNAMFQLPDNSKPPGTVAHVLKSGYTLYERVIRPAEVGV 342 (357)
Q Consensus 264 ~~lksl~eGVeMi~kqL~~vL~k~GVe~Iep-vGe~FDPnlHEAV~~v~~~e~e~gtVveVlqkGY~L~dRVLRPA~VvV 342 (357)
+.+++|++||+||+++|.++|+++||++|+| +|++|||++||||++++++++++|+|++|+|+||+|+|||||||+|+|
T Consensus 90 ~~~~~i~~Gvemi~k~~~~~L~k~GV~~I~~~~G~~FDP~~HEAv~~~~~~~~~~gtVi~V~qkGY~l~dRVLRPA~V~V 169 (208)
T PRK14155 90 PAVKNFIIGVEMTEKELLGAFERNGLKKIDPAKGDKFDPHLHQAMMEQPSTEVAAGGVLQVMQAGYELMGRLVRPAMVAV 169 (208)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHCCCceecCCCCCCCChhHhceeeeecCCCCCcCeEEEEeeCCeEeCCEeeccceEEE
Confidence 3468999999999999999999999999999 899999999999999999999999999999999999999999999999
Q ss_pred ecCCCCc
Q 018372 343 TQAVEND 349 (357)
Q Consensus 343 sK~~e~~ 349 (357)
++++...
T Consensus 170 ak~~~~~ 176 (208)
T PRK14155 170 AAKGSTG 176 (208)
T ss_pred CCCCCcc
Confidence 9975543
No 9
>PRK14145 heat shock protein GrpE; Provisional
Probab=100.00 E-value=1.2e-45 Score=338.85 Aligned_cols=149 Identities=32% Similarity=0.484 Sum_probs=138.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhhhhhhhcccCCCCCC
Q 018372 179 KEREELLMAKNEEMKQMQDKVLRSFAEMENVKDRTIREAENSKKFAIQNFAKALLDVADNLGRASSVVKENFLKIDPSND 258 (357)
Q Consensus 179 ~e~ee~L~e~~~EleelkDk~lR~~AEfEN~RKR~~rE~e~akk~Aie~f~kdLLpVlDnLERAle~~~e~~~k~d~s~d 258 (357)
..+.+.+..+++++++++++|+|++|||+|||||+++|++++++||+++|+++||||+|||+||+.+..
T Consensus 48 ~~l~~~l~~le~e~~el~d~~lR~~AEfeN~rkR~~kE~e~~~~~a~e~~~~~LLpV~DnLerAl~~~~----------- 116 (196)
T PRK14145 48 EELKQKLQQKEVEAQEYLDIAQRLKAEFENYRKRTEKEKSEMVEYGKEQVILELLPVMDNFERALASSG----------- 116 (196)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHhccc-----------
Confidence 344555677889999999999999999999999999999999999999999999999999999997521
Q ss_pred CCCchhhHHHHHHHHHHHHHHHHHHHHhCCCeeeCCCCCCCCccccceeeeccCCCCCCCceEEEeeccceeCCEeeeec
Q 018372 259 TAGAVPLLKSLLEGVEMTEKQLGEVFKKFGVEKFDPINEPFDPHRHNAMFQLPDNSKPPGTVAHVLKSGYTLYERVIRPA 338 (357)
Q Consensus 259 ~a~~n~~lksl~eGVeMi~kqL~~vL~k~GVe~IepvGe~FDPnlHEAV~~v~~~e~e~gtVveVlqkGY~L~dRVLRPA 338 (357)
...+|++||+||+++|.++|+++||++|+++|++|||++|+||++++++++++|||++|+|+||+|+|||||||
T Consensus 117 ------~~~~l~~Gv~mi~k~l~~vL~k~GVe~I~~~Ge~FDP~~HEAv~~~~~~~~~~gtVv~V~qkGY~l~dRVLRPA 190 (196)
T PRK14145 117 ------DYNSLKEGIELIYRQFKKILDKFGVKEIEAEGQIFDPYKHHAVMQEEVEGKQPNEIIEVFQKGYYLKDKVIRPS 190 (196)
T ss_pred ------cHHHHHHHHHHHHHHHHHHHHHCCCEEeCCCCCCCCchhhheeeeeCCCCCCcCEEEEEeeCCcEeCCEeeccc
Confidence 13579999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEeec
Q 018372 339 EVGVTQ 344 (357)
Q Consensus 339 ~VvVsK 344 (357)
+|+|++
T Consensus 191 ~V~Vak 196 (196)
T PRK14145 191 LVKVAK 196 (196)
T ss_pred eEEeCC
Confidence 999985
No 10
>PRK14158 heat shock protein GrpE; Provisional
Probab=100.00 E-value=1.2e-45 Score=338.54 Aligned_cols=152 Identities=38% Similarity=0.555 Sum_probs=140.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhhhhhhhcccCCCCC
Q 018372 178 LKEREELLMAKNEEMKQMQDKVLRSFAEMENVKDRTIREAENSKKFAIQNFAKALLDVADNLGRASSVVKENFLKIDPSN 257 (357)
Q Consensus 178 v~e~ee~L~e~~~EleelkDk~lR~~AEfEN~RKR~~rE~e~akk~Aie~f~kdLLpVlDnLERAle~~~e~~~k~d~s~ 257 (357)
+..+++.+..+++++++++++|+|++|||+|||||+++|++++++||+++|+++||||+|||+||+.+...
T Consensus 42 ~~~le~~l~~le~e~~el~d~~lR~~AefeN~RkR~~kE~e~~~~~a~~~~~~~lLpV~DnLerAl~~~~~--------- 112 (194)
T PRK14158 42 IKELEEALAAKEAEAAANWDKYLRERADLENYRKRVQKEKEELLKYGNESLILEILPAVDNMERALDHADE--------- 112 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHhccCc---------
Confidence 44556667788899999999999999999999999999999999999999999999999999999986421
Q ss_pred CCCCchhhHHHHHHHHHHHHHHHHHHHHhCCCeeeCC-CCCCCCccccceeeeccCCCCCCCceEEEeeccceeCCEeee
Q 018372 258 DTAGAVPLLKSLLEGVEMTEKQLGEVFKKFGVEKFDP-INEPFDPHRHNAMFQLPDNSKPPGTVAHVLKSGYTLYERVIR 336 (357)
Q Consensus 258 d~a~~n~~lksl~eGVeMi~kqL~~vL~k~GVe~Iep-vGe~FDPnlHEAV~~v~~~e~e~gtVveVlqkGY~L~dRVLR 336 (357)
..+++|++||+||+++|.++|+++||++|++ +|++|||++||||+++++++.++|||++|+|+||+|+|||||
T Consensus 113 ------~~~~~i~~Gv~mi~k~l~~vLek~Gv~~I~~~~G~~FDP~~HEAv~~~~~~~~~~gtVv~v~qkGY~l~dRVLR 186 (194)
T PRK14158 113 ------ESMSAIIEGIRMTLSMLLSTLKKFGVTPVEAEKGTPFDPAYHQAMCQVESAEQEPNTVVAVFQKGYLLNERLLR 186 (194)
T ss_pred ------chHHHHHHHHHHHHHHHHHHHHHCCCEEecCCCCCCCChHHhhhheeecCCCCCcCEEEEEeeCCcEeCCEEee
Confidence 1247899999999999999999999999998 799999999999999999999999999999999999999999
Q ss_pred ecEEEeec
Q 018372 337 PAEVGVTQ 344 (357)
Q Consensus 337 PA~VvVsK 344 (357)
||+|+|+|
T Consensus 187 pA~V~VsK 194 (194)
T PRK14158 187 PAMVSVAT 194 (194)
T ss_pred cceeEeCC
Confidence 99999986
No 11
>PRK14163 heat shock protein GrpE; Provisional
Probab=100.00 E-value=2.3e-45 Score=340.64 Aligned_cols=150 Identities=28% Similarity=0.424 Sum_probs=139.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhhhhhhhcccCCCCCCCC
Q 018372 181 REELLMAKNEEMKQMQDKVLRSFAEMENVKDRTIREAENSKKFAIQNFAKALLDVADNLGRASSVVKENFLKIDPSNDTA 260 (357)
Q Consensus 181 ~ee~L~e~~~EleelkDk~lR~~AEfEN~RKR~~rE~e~akk~Aie~f~kdLLpVlDnLERAle~~~e~~~k~d~s~d~a 260 (357)
+.+.+..+++++++++|+|+|++|||+|||||+.||++++++||+++|+++||||+|||+||+.+.
T Consensus 45 l~~~l~~l~~e~~el~d~~lR~~AEfeN~rkR~~kE~e~~~~~a~~~~~~~LLpVlDnLerAl~~~-------------- 110 (214)
T PRK14163 45 LTAQLDQVRTALGERTADLQRLQAEYQNYRRRVERDRVTVKEIAVANLLSELLPVLDDVGRAREHG-------------- 110 (214)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhHHHHHHhch--------------
Confidence 344566778889999999999999999999999999999999999999999999999999998641
Q ss_pred CchhhHHHHHHHHHHHHHHHHHHHHhCCCeeeCCCCCCCCccccceeeeccCCCCCCCceEEEeeccceeCCEeeeecEE
Q 018372 261 GAVPLLKSLLEGVEMTEKQLGEVFKKFGVEKFDPINEPFDPHRHNAMFQLPDNSKPPGTVAHVLKSGYTLYERVIRPAEV 340 (357)
Q Consensus 261 ~~n~~lksl~eGVeMi~kqL~~vL~k~GVe~IepvGe~FDPnlHEAV~~v~~~e~e~gtVveVlqkGY~L~dRVLRPA~V 340 (357)
.|++||+||+++|.++|+++||++|+++|++|||++|+||++++++++++|+|++|+|+||+|||||||||+|
T Consensus 111 -------~l~~Gv~mi~k~l~~~L~k~Gv~~I~~~G~~FDP~~HEAv~~~~~~~~~~gtVv~v~qkGY~l~~RVLRPA~V 183 (214)
T PRK14163 111 -------ELVGGFKSVAESLETTVAKLGLQQFGKEGEPFDPTIHEALMHSYAPDVTETTCVAILQPGYRIGERTIRPARV 183 (214)
T ss_pred -------hHHHHHHHHHHHHHHHHHHCCCEEeCCCCCCCChhHhceeeeecCCCCCcCEEEEEeeCCcCcCCEeccCceE
Confidence 4899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeecCCCCccc
Q 018372 341 GVTQAVENDRA 351 (357)
Q Consensus 341 vVsK~~e~~~~ 351 (357)
+|+++++..++
T Consensus 184 ~Vsk~~~~~~~ 194 (214)
T PRK14163 184 AVAEPQPGAQT 194 (214)
T ss_pred EECCCCCCCCC
Confidence 99997554443
No 12
>PRK14140 heat shock protein GrpE; Provisional
Probab=100.00 E-value=2.9e-45 Score=335.22 Aligned_cols=153 Identities=37% Similarity=0.546 Sum_probs=140.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhhhhhhhcccCCCCC
Q 018372 178 LKEREELLMAKNEEMKQMQDKVLRSFAEMENVKDRTIREAENSKKFAIQNFAKALLDVADNLGRASSVVKENFLKIDPSN 257 (357)
Q Consensus 178 v~e~ee~L~e~~~EleelkDk~lR~~AEfEN~RKR~~rE~e~akk~Aie~f~kdLLpVlDnLERAle~~~e~~~k~d~s~ 257 (357)
+.+++..+..+++++++++++|+|++|||+|||||+++|++++++||+++|+++||||+|||+||+.+.+.
T Consensus 39 ~~~l~~~i~~l~~ei~elkd~~lR~~Ae~eN~rkR~~rE~~~~~~~a~~~~~~~LLpvlDnLerAl~~~~~--------- 109 (191)
T PRK14140 39 LDEEQAKIAELEAKLDELEERYLRLQADFENYKRRIQKENEAAEKYRAQSLASDLLPALDNFERALQIEAD--------- 109 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCc---------
Confidence 34445556778889999999999999999999999999999999999999999999999999999986431
Q ss_pred CCCCchhhHHHHHHHHHHHHHHHHHHHHhCCCeeeCCCCCCCCccccceeeeccCCCCCCCceEEEeeccceeCCEeeee
Q 018372 258 DTAGAVPLLKSLLEGVEMTEKQLGEVFKKFGVEKFDPINEPFDPHRHNAMFQLPDNSKPPGTVAHVLKSGYTLYERVIRP 337 (357)
Q Consensus 258 d~a~~n~~lksl~eGVeMi~kqL~~vL~k~GVe~IepvGe~FDPnlHEAV~~v~~~e~e~gtVveVlqkGY~L~dRVLRP 337 (357)
++.+++|++||+||+++|.++|+++||++|+++|++|||++|+||+++++++.++|||+.|+|+||+||||||||
T Consensus 110 -----~~~~~~i~~Gv~mi~k~l~~~L~k~GV~~i~~~Ge~FDP~~HEAv~~~~~~~~~~gtVv~V~qkGY~l~dRVLRp 184 (191)
T PRK14140 110 -----DEQTKSLLKGVEMVHRQLLEALKKEGVEVIEAVGEQFDPNLHQAVMQDEDEDFESNEVVEELQKGYKLKDRVIRP 184 (191)
T ss_pred -----cchHHHHHHHHHHHHHHHHHHHHHCCCEeeCCCCCCCChHHhccceeeCCCCCCcCeEEEEeeCCeEeCCEEecC
Confidence 123578999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cEEEeec
Q 018372 338 AEVGVTQ 344 (357)
Q Consensus 338 A~VvVsK 344 (357)
|+|+|++
T Consensus 185 A~V~Vak 191 (191)
T PRK14140 185 SMVKVNQ 191 (191)
T ss_pred cEEEeCC
Confidence 9999985
No 13
>PRK14162 heat shock protein GrpE; Provisional
Probab=100.00 E-value=4.1e-45 Score=334.91 Aligned_cols=149 Identities=34% Similarity=0.479 Sum_probs=137.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhhhhhhhcccCCCCCCCCC
Q 018372 182 EELLMAKNEEMKQMQDKVLRSFAEMENVKDRTIREAENSKKFAIQNFAKALLDVADNLGRASSVVKENFLKIDPSNDTAG 261 (357)
Q Consensus 182 ee~L~e~~~EleelkDk~lR~~AEfEN~RKR~~rE~e~akk~Aie~f~kdLLpVlDnLERAle~~~e~~~k~d~s~d~a~ 261 (357)
+..++.+++++++++++|+|++|||+|||||+++|++++++||+++|+++||||+|||+||+.+.+.
T Consensus 45 ~~~l~~l~~e~~elkd~~lR~~AEfeN~rkR~~kE~e~~~~~a~~~~~~~LLpV~DnLerAl~~~~~------------- 111 (194)
T PRK14162 45 EKEIADLKAKNKDLEDKYLRSQAEIQNMQNRYAKERAQLIKYESQSLAKDVLPAMDNLERALAVKAD------------- 111 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHhcccc-------------
Confidence 3445667888999999999999999999999999999999999999999999999999999986432
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHhCCCeeeCCCCCCCCccccceeeeccCC-CCCCCceEEEeeccceeCCEeeeecEE
Q 018372 262 AVPLLKSLLEGVEMTEKQLGEVFKKFGVEKFDPINEPFDPHRHNAMFQLPDN-SKPPGTVAHVLKSGYTLYERVIRPAEV 340 (357)
Q Consensus 262 ~n~~lksl~eGVeMi~kqL~~vL~k~GVe~IepvGe~FDPnlHEAV~~v~~~-e~e~gtVveVlqkGY~L~dRVLRPA~V 340 (357)
+..+++|++||+||+++|.++|.++||++|+++|++|||++|+||++++++ +.++|+|++|+|+||+|||||||||+|
T Consensus 112 -~~~~~~l~~Gvemi~k~l~~vL~~~GV~~I~~~G~~FDP~~HEAv~~~~~~~~~~~gtVv~v~qkGY~l~dRVLRpA~V 190 (194)
T PRK14162 112 -DEAAKQLKKGVQMTLDHLVKALKDHGVTEIKADGEKFDPTLHQAVQTVAAENDDQKDHVVQVLQKGYQYKDRTLRPAMV 190 (194)
T ss_pred -chhHHHHHHHHHHHHHHHHHHHHHCCCEEeCCCCCCCChhHhhhheeecCCCCCCcCEEEEEeeCCcEeCCEeeecceE
Confidence 123578999999999999999999999999999999999999999999974 689999999999999999999999999
Q ss_pred Eeec
Q 018372 341 GVTQ 344 (357)
Q Consensus 341 vVsK 344 (357)
+|++
T Consensus 191 ~Vak 194 (194)
T PRK14162 191 VVAQ 194 (194)
T ss_pred EeCC
Confidence 9985
No 14
>PRK14139 heat shock protein GrpE; Provisional
Probab=100.00 E-value=4.2e-45 Score=332.71 Aligned_cols=146 Identities=41% Similarity=0.607 Sum_probs=135.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhhhhhhhcccCCCCCCCCCc
Q 018372 183 ELLMAKNEEMKQMQDKVLRSFAEMENVKDRTIREAENSKKFAIQNFAKALLDVADNLGRASSVVKENFLKIDPSNDTAGA 262 (357)
Q Consensus 183 e~L~e~~~EleelkDk~lR~~AEfEN~RKR~~rE~e~akk~Aie~f~kdLLpVlDnLERAle~~~e~~~k~d~s~d~a~~ 262 (357)
+.++.+++++++++|+|+|++|||+|||||+++|++++++||+++|+++||||+|||+||+.+..
T Consensus 39 ~~l~~le~e~~elkd~~lR~~AefeN~rKR~~kE~e~~~~~a~~~~~~~LLpv~DnLerAl~~~~--------------- 103 (185)
T PRK14139 39 AELAEAEAKAAELQDSFLRAKAETENVRRRAQEDVAKAHKFAIESFAESLLPVKDSLEAALADES--------------- 103 (185)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHhccc---------------
Confidence 34566778899999999999999999999999999999999999999999999999999996421
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHhCCCeeeCCCCCCCCccccceeeeccCCCCCCCceEEEeeccceeCCEeeeecEEEe
Q 018372 263 VPLLKSLLEGVEMTEKQLGEVFKKFGVEKFDPINEPFDPHRHNAMFQLPDNSKPPGTVAHVLKSGYTLYERVIRPAEVGV 342 (357)
Q Consensus 263 n~~lksl~eGVeMi~kqL~~vL~k~GVe~IepvGe~FDPnlHEAV~~v~~~e~e~gtVveVlqkGY~L~dRVLRPA~VvV 342 (357)
..+.+|++||+||+++|.++|+++||++|+++|++|||++||||+++++ +.++|+|++|+|+||+|||||||||+|+|
T Consensus 104 -~~~~~l~~Gv~mi~k~l~~vL~k~Gv~~I~~~G~~FDP~~HEAv~~~~~-~~~~gtVi~V~qkGY~l~dRVLRPA~V~V 181 (185)
T PRK14139 104 -GDLEKLREGVELTLKQLTSAFEKGRVVEINPVGEKFDPHQHQAISMVPA-EQEPNTVVAVLQKGYTIADRVLRPALVTV 181 (185)
T ss_pred -chHHHHHHHHHHHHHHHHHHHHHCCCceeCCCCCCCChHHhheeeeecC-CCCcCEEEEEeeCCcEeCCEeccCceEEe
Confidence 1246899999999999999999999999999999999999999999998 67899999999999999999999999999
Q ss_pred ecC
Q 018372 343 TQA 345 (357)
Q Consensus 343 sK~ 345 (357)
+++
T Consensus 182 ak~ 184 (185)
T PRK14139 182 AAP 184 (185)
T ss_pred CCC
Confidence 984
No 15
>PRK14160 heat shock protein GrpE; Provisional
Probab=100.00 E-value=5.6e-45 Score=337.61 Aligned_cols=157 Identities=32% Similarity=0.462 Sum_probs=146.1
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhhhhhhh
Q 018372 170 SRDDLVKLLKEREELLMAKNEEMKQMQDKVLRSFAEMENVKDRTIREAENSKKFAIQNFAKALLDVADNLGRASSVVKEN 249 (357)
Q Consensus 170 s~deL~klv~e~ee~L~e~~~EleelkDk~lR~~AEfEN~RKR~~rE~e~akk~Aie~f~kdLLpVlDnLERAle~~~e~ 249 (357)
...++.+.+..+++.+..+++++++++++|+|++|||+|||||+.||++++++||+++|+++||||+|||+||+.+..
T Consensus 55 ~~~~l~~e~~~l~~~l~~l~~e~~elkd~~lR~~AefeN~RKR~~kE~e~~~~~a~e~~~~~LLpVlDnLerAl~~~~-- 132 (211)
T PRK14160 55 KIEELKDENNKLKEENKKLENELEALKDRLLRTVAEYDNYRKRTAKEKEGIYSDACEDVLKELLPVLDNLERAAAVEG-- 132 (211)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHhccc--
Confidence 445667778888888999999999999999999999999999999999999999999999999999999999997521
Q ss_pred cccCCCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHhCCCeeeCCCCCCCCccccceeeeccCCCCCCCceEEEeeccce
Q 018372 250 FLKIDPSNDTAGAVPLLKSLLEGVEMTEKQLGEVFKKFGVEKFDPINEPFDPHRHNAMFQLPDNSKPPGTVAHVLKSGYT 329 (357)
Q Consensus 250 ~~k~d~s~d~a~~n~~lksl~eGVeMi~kqL~~vL~k~GVe~IepvGe~FDPnlHEAV~~v~~~e~e~gtVveVlqkGY~ 329 (357)
....|++||+||+++|.++|+++||++|++.| +|||++|+||++++++++++|+|++|+|+||+
T Consensus 133 ---------------~~~~l~~Gv~mi~kql~~vL~k~GVe~I~~~G-~FDP~~HEAv~~~~~~e~~~gtVveV~qkGY~ 196 (211)
T PRK14160 133 ---------------SVEDLKKGIEMTVKQFKTSLEKLGVEEISTEG-EFDPNLHNAVMHVEDENYGENEIVEVFQKGYK 196 (211)
T ss_pred ---------------chhHHHHHHHHHHHHHHHHHHHCCCEEeCCCC-CCChHHhceeeeeCCCCCCcCeEEEEeeCCcE
Confidence 12579999999999999999999999999999 89999999999999999999999999999999
Q ss_pred eCCEeeeecEEEeec
Q 018372 330 LYERVIRPAEVGVTQ 344 (357)
Q Consensus 330 L~dRVLRPA~VvVsK 344 (357)
|||||||||+|+|++
T Consensus 197 l~dRVLRpA~V~Va~ 211 (211)
T PRK14160 197 RGDKVIRYSMVKVAN 211 (211)
T ss_pred eCCEeeecceEEeCC
Confidence 999999999999984
No 16
>PRK14150 heat shock protein GrpE; Provisional
Probab=100.00 E-value=7.5e-45 Score=332.76 Aligned_cols=151 Identities=41% Similarity=0.632 Sum_probs=134.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhhhhhhhcccCCCCC
Q 018372 178 LKEREELLMAKNEEMKQMQDKVLRSFAEMENVKDRTIREAENSKKFAIQNFAKALLDVADNLGRASSVVKENFLKIDPSN 257 (357)
Q Consensus 178 v~e~ee~L~e~~~EleelkDk~lR~~AEfEN~RKR~~rE~e~akk~Aie~f~kdLLpVlDnLERAle~~~e~~~k~d~s~ 257 (357)
+.++++.+..+++ +++++|+|++|||+|||||+++|++++++||+++|+++||||+|||+||+.+...
T Consensus 43 i~~l~~~l~~~~~---~~kd~~lR~~AefeN~rkR~~kE~~~~~~~a~~~~~~~lL~v~DnlerAl~~~~~--------- 110 (193)
T PRK14150 43 IAELEAQLAEAQA---EERDSVLRARAEVENIRRRAEQDVEKAHKFALEKFANELLPVIDNLERALQAADK--------- 110 (193)
T ss_pred HHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHhcccc---------
Confidence 3444444444332 6899999999999999999999999999999999999999999999999975421
Q ss_pred CCCCchhhHHHHHHHHHHHHHHHHHHHHhCCCeeeCCCCCCCCccccceeeeccCCCCCCCceEEEeeccceeCCEeeee
Q 018372 258 DTAGAVPLLKSLLEGVEMTEKQLGEVFKKFGVEKFDPINEPFDPHRHNAMFQLPDNSKPPGTVAHVLKSGYTLYERVIRP 337 (357)
Q Consensus 258 d~a~~n~~lksl~eGVeMi~kqL~~vL~k~GVe~IepvGe~FDPnlHEAV~~v~~~e~e~gtVveVlqkGY~L~dRVLRP 337 (357)
.+..+++|++||+||+++|.++|+++||++|+++|++|||++|+||+++++++.++|||++|+|+||+||||||||
T Consensus 111 ----~~~~~~~~~~Gv~mi~~~l~~~L~~~Gv~~i~~~G~~FDP~~HeAv~~~~~~~~~~gtI~~v~q~GY~l~drvLRp 186 (193)
T PRK14150 111 ----ENEALKALIEGVELTLKSLLDTVAKFGVEVVGPVGEPFNPEVHQAISMQESEDHEPNTVMMVMQKGYTLNGRLLRP 186 (193)
T ss_pred ----cchhHHHHHHHHHHHHHHHHHHHHHCCCeeeCCCCCCCCHhHcceeeeeCCCCCCcCEEEEEeeCCeEeCCEEecc
Confidence 0123578999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cEEEeec
Q 018372 338 AEVGVTQ 344 (357)
Q Consensus 338 A~VvVsK 344 (357)
|+|+|++
T Consensus 187 A~V~Vsk 193 (193)
T PRK14150 187 AMVMVSK 193 (193)
T ss_pred eEEEeCC
Confidence 9999985
No 17
>PRK14144 heat shock protein GrpE; Provisional
Probab=100.00 E-value=6.8e-45 Score=334.45 Aligned_cols=164 Identities=36% Similarity=0.579 Sum_probs=145.4
Q ss_pred chhhhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHh
Q 018372 163 SESEIELSRDDLVKLLKEREELLMAKNEEMKQMQDKVLRSFAEMENVKDRTIREAENSKKFAIQNFAKALLDVADNLGRA 242 (357)
Q Consensus 163 ~~~e~~ls~deL~klv~e~ee~L~e~~~EleelkDk~lR~~AEfEN~RKR~~rE~e~akk~Aie~f~kdLLpVlDnLERA 242 (357)
...+..+...++.. +++.+..+++++++++++|+|++|||+|||||+++|++++++||+++|+++||||+|||+||
T Consensus 36 ~~~~~~~~~~~~~~----l~~~i~~le~e~~elkdk~lR~~AefeN~RKR~~kE~e~~~~~a~~~~~~~LLpV~DnLerA 111 (199)
T PRK14144 36 QHQEPALGHPSYTA----LEEQLTLAEQKAHENWEKSVRALAELENVRRRMEREVANAHKYGVEKLISALLPVVDSLEQA 111 (199)
T ss_pred ccccCCCCchhHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhHHHHH
Confidence 33445555555433 34456678899999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhhcccCCCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHhCCCeeeCCCCCCCCccccceeeeccCCCCCCCceEE
Q 018372 243 SSVVKENFLKIDPSNDTAGAVPLLKSLLEGVEMTEKQLGEVFKKFGVEKFDPINEPFDPHRHNAMFQLPDNSKPPGTVAH 322 (357)
Q Consensus 243 le~~~e~~~k~d~s~d~a~~n~~lksl~eGVeMi~kqL~~vL~k~GVe~IepvGe~FDPnlHEAV~~v~~~e~e~gtVve 322 (357)
+.+.... . ..+|++||+||+++|.++|+++||++|+++|++|||++|+||+++++++.++|||++
T Consensus 112 l~~~~~~------------~---~~~i~~Gv~mi~k~l~~~L~k~GV~~I~~~G~~FDP~~HEAv~~~~~~~~~~gtVv~ 176 (199)
T PRK14144 112 LQLADKN------------S---DPSMHEGLELTMKLFLDALQKFDVEQIDPLGQTFDPQQHEAMSMQPAPGAPPNSVIT 176 (199)
T ss_pred HHccccc------------c---hhHHHHHHHHHHHHHHHHHHHCCCEEeCCCCCCCChhHhceeeeeCCCCCCcCeEEE
Confidence 9865320 0 147999999999999999999999999999999999999999999999999999999
Q ss_pred EeeccceeCCEeeeecEEEeecC
Q 018372 323 VLKSGYTLYERVIRPAEVGVTQA 345 (357)
Q Consensus 323 VlqkGY~L~dRVLRPA~VvVsK~ 345 (357)
|+|+||+|+|||||||+|+|+++
T Consensus 177 V~qkGY~l~dRVLRpA~V~Vskk 199 (199)
T PRK14144 177 VFQKGYKLSDRVIRPARVIVSTK 199 (199)
T ss_pred EeeCCcEECCEEecccEEEecCC
Confidence 99999999999999999999874
No 18
>COG0576 GrpE Molecular chaperone GrpE (heat shock protein) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=6e-45 Score=333.20 Aligned_cols=151 Identities=44% Similarity=0.673 Sum_probs=139.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhhhhhhhcccCCCCCCCCCc
Q 018372 183 ELLMAKNEEMKQMQDKVLRSFAEMENVKDRTIREAENSKKFAIQNFAKALLDVADNLGRASSVVKENFLKIDPSNDTAGA 262 (357)
Q Consensus 183 e~L~e~~~EleelkDk~lR~~AEfEN~RKR~~rE~e~akk~Aie~f~kdLLpVlDnLERAle~~~e~~~k~d~s~d~a~~ 262 (357)
.++..++.++++++++|+|++|||+|||||+++|++++++||+++|+.+||||+|||+||+.+.... .
T Consensus 43 ~~i~~Le~q~~e~~~~~lr~~Ae~eN~rkR~~re~e~~~k~a~e~~~~dlLpviDnlerAl~~~~~~-------~----- 110 (193)
T COG0576 43 QEIAELEAQLEELKDKYLRAQAEFENLRKRTEREREEAKKYAIEKFAKDLLPVIDNLERALEAAEDD-------K----- 110 (193)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc-------c-----
Confidence 3456677888889999999999999999999999999999999999999999999999999875431 1
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHhCCCeeeCCCCCCCCccccceeeeccCCCCCCCceEEEeeccceeCCEeeeecEEEe
Q 018372 263 VPLLKSLLEGVEMTEKQLGEVFKKFGVEKFDPINEPFDPHRHNAMFQLPDNSKPPGTVAHVLKSGYTLYERVIRPAEVGV 342 (357)
Q Consensus 263 n~~lksl~eGVeMi~kqL~~vL~k~GVe~IepvGe~FDPnlHEAV~~v~~~e~e~gtVveVlqkGY~L~dRVLRPA~VvV 342 (357)
++. ++|++||+||+++|.++|.++||++|++.|++|||++|+||++++++++++|||++|+|+||+|||||||||+|+|
T Consensus 111 d~~-~~l~~Gvem~~~~l~~~L~k~Gv~~i~~~Ge~FDP~~HeAv~~~~~~~~~~~tVv~v~qkGY~l~dRVLRpA~V~V 189 (193)
T COG0576 111 DPE-KALLEGVEMTLDQLLDALEKLGVEEIGPEGEKFDPNLHEAVQRVESEDVEPNTVVEVLQKGYKLNDRVLRPAMVKV 189 (193)
T ss_pred chH-HHHHHHHHHHHHHHHHHHHHCCCEEeCCCCCCCCHHHhhheeeecCCCCCCCeEEEEeecCeeeCCEeccceEEEE
Confidence 112 6899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecCC
Q 018372 343 TQAV 346 (357)
Q Consensus 343 sK~~ 346 (357)
++++
T Consensus 190 ak~~ 193 (193)
T COG0576 190 AKKE 193 (193)
T ss_pred ecCC
Confidence 9864
No 19
>PRK14146 heat shock protein GrpE; Provisional
Probab=100.00 E-value=7.4e-45 Score=337.73 Aligned_cols=152 Identities=30% Similarity=0.439 Sum_probs=139.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhhhhhhhcccCCCCCCCC
Q 018372 181 REELLMAKNEEMKQMQDKVLRSFAEMENVKDRTIREAENSKKFAIQNFAKALLDVADNLGRASSVVKENFLKIDPSNDTA 260 (357)
Q Consensus 181 ~ee~L~e~~~EleelkDk~lR~~AEfEN~RKR~~rE~e~akk~Aie~f~kdLLpVlDnLERAle~~~e~~~k~d~s~d~a 260 (357)
++..+..+++++++++++|+|++|||+|||||+.+|++++++||+++|+++||||+|||+||+.+...
T Consensus 59 l~~~l~~l~~e~~el~d~~lR~~AdfeN~rkR~~kE~e~~~~~a~e~~~~~lLpv~DnlerAl~~~~~------------ 126 (215)
T PRK14146 59 LQKELDNAKKEIESLKDSWARERAEFQNFKRRSAQEFVSIRKEAVKSLVSGFLNPIDNLERVGATQNQ------------ 126 (215)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHhcccc------------
Confidence 34456677889999999999999999999999999999999999999999999999999999976421
Q ss_pred CchhhHHHHHHHHHHHHHHHHHHHHhCCCeeeCCCCCCCCccccceeeeccCCCCCCCceEEEeeccceeCC----Eeee
Q 018372 261 GAVPLLKSLLEGVEMTEKQLGEVFKKFGVEKFDPINEPFDPHRHNAMFQLPDNSKPPGTVAHVLKSGYTLYE----RVIR 336 (357)
Q Consensus 261 ~~n~~lksl~eGVeMi~kqL~~vL~k~GVe~IepvGe~FDPnlHEAV~~v~~~e~e~gtVveVlqkGY~L~d----RVLR 336 (357)
++.+++|++||+||+++|.++|+++||++|+++|++|||++|+||++++++++++|+|+.|+|+||+|+| ||||
T Consensus 127 --~~~~~~l~~Gv~mi~k~l~~~L~k~Gv~~i~~~G~~FDP~~HeAv~~~~~~~~~~g~Vv~v~qkGY~l~~r~~~RvLR 204 (215)
T PRK14146 127 --SEELKPFVEGVKMILKEFYSVLEKSNVIRFDPKGEPFDPMSMEALSSEEGDQYSEETVIDVYQAGYYYKENEDKFTLR 204 (215)
T ss_pred --cchhhHHHHHHHHHHHHHHHHHHHCcCeeeCCCCCCCChhHhceeeeecCCCCCcCEEEEEeeCCeEeCCccCCeecc
Confidence 1235789999999999999999999999999999999999999999999999999999999999999999 6999
Q ss_pred ecEEEeecCC
Q 018372 337 PAEVGVTQAV 346 (357)
Q Consensus 337 PA~VvVsK~~ 346 (357)
||+|+|++++
T Consensus 205 pA~V~Vak~~ 214 (215)
T PRK14146 205 PARVRIGKPK 214 (215)
T ss_pred CceEEeCCCC
Confidence 9999999854
No 20
>PRK14159 heat shock protein GrpE; Provisional
Probab=100.00 E-value=1.1e-44 Score=327.89 Aligned_cols=145 Identities=34% Similarity=0.510 Sum_probs=134.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhhhhhhhcccCCCCCCCCCchh
Q 018372 185 LMAKNEEMKQMQDKVLRSFAEMENVKDRTIREAENSKKFAIQNFAKALLDVADNLGRASSVVKENFLKIDPSNDTAGAVP 264 (357)
Q Consensus 185 L~e~~~EleelkDk~lR~~AEfEN~RKR~~rE~e~akk~Aie~f~kdLLpVlDnLERAle~~~e~~~k~d~s~d~a~~n~ 264 (357)
++.+++++++++++|+|++|||+|||||+.+|++++++||+++|+++||||+|||+||+.+.+. +.
T Consensus 32 i~~l~~e~~elkd~~lR~~AdfeN~rkR~~rE~e~~~~~a~~~~~~~LLpV~DnlerAl~~~~~--------------~~ 97 (176)
T PRK14159 32 QNKLQKDYDELKDKYMRANAEFENIKKRMEKEKLSAMAYANESFAKDLLDVLDALEAAVNVECH--------------DE 97 (176)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHhcccc--------------cc
Confidence 4556788899999999999999999999999999999999999999999999999999986432 01
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhCCCeeeCCCCCCCCccccceeeeccCCCCCCCceEEEeeccceeCCEeeeecEEEeec
Q 018372 265 LLKSLLEGVEMTEKQLGEVFKKFGVEKFDPINEPFDPHRHNAMFQLPDNSKPPGTVAHVLKSGYTLYERVIRPAEVGVTQ 344 (357)
Q Consensus 265 ~lksl~eGVeMi~kqL~~vL~k~GVe~IepvGe~FDPnlHEAV~~v~~~e~e~gtVveVlqkGY~L~dRVLRPA~VvVsK 344 (357)
...+|++||+||+++|.++|+++||++|++.| +|||++|+||++++++++++|+|++|+|+||+|||||||||+|+|++
T Consensus 98 ~~~~l~~Gv~mi~k~l~~vL~k~Gv~~I~~~G-~FDP~~HEAv~~~~~~~~~~gtVv~v~qkGY~l~dRVLRpA~V~Vak 176 (176)
T PRK14159 98 ISLKIKEGVQNTLDLFLKKLEKHGVALIKEEK-EFDPNLHEAMFHVDSENHQSGEVVQVLQKGYKIADRVIRPTKVSVAK 176 (176)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHCcCEecCCCC-CCChHHhhhhheeCCCCCCcCeEEEEeeCCcEeCCEeeecceeEeCC
Confidence 23679999999999999999999999999999 69999999999999999999999999999999999999999999985
No 21
>PRK14154 heat shock protein GrpE; Provisional
Probab=100.00 E-value=1.8e-44 Score=333.53 Aligned_cols=147 Identities=33% Similarity=0.481 Sum_probs=136.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhhhhhhhcccCCCCCCCCCch
Q 018372 184 LLMAKNEEMKQMQDKVLRSFAEMENVKDRTIREAENSKKFAIQNFAKALLDVADNLGRASSVVKENFLKIDPSNDTAGAV 263 (357)
Q Consensus 184 ~L~e~~~EleelkDk~lR~~AEfEN~RKR~~rE~e~akk~Aie~f~kdLLpVlDnLERAle~~~e~~~k~d~s~d~a~~n 263 (357)
.|+.+++++++++++|+|++|||+|||||++||++++++||+++|+++||||+|||+||+.+... .+
T Consensus 60 el~~le~e~~elkd~~lRl~ADfeNyRKR~~kE~e~~~~~a~e~~~~~LLpVlDnLeRAL~~~~~-------------~~ 126 (208)
T PRK14154 60 QLTRMERKVDEYKTQYLRAQAEMDNLRKRIEREKADIIKFGSKQLITDLLPVADSLIHGLESPAS-------------ED 126 (208)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHhcccc-------------cc
Confidence 45567788899999999999999999999999999999999999999999999999999986421 12
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhCCCeeeCC-CCCCCCccccceeeeccCCCCCCCceEEEeeccceeCCEeeeecEEEe
Q 018372 264 PLLKSLLEGVEMTEKQLGEVFKKFGVEKFDP-INEPFDPHRHNAMFQLPDNSKPPGTVAHVLKSGYTLYERVIRPAEVGV 342 (357)
Q Consensus 264 ~~lksl~eGVeMi~kqL~~vL~k~GVe~Iep-vGe~FDPnlHEAV~~v~~~e~e~gtVveVlqkGY~L~dRVLRPA~VvV 342 (357)
+.+++|++||+||+++|.++|+++||++|++ +|++|||++||||+++++++.++|||++|+|+||+|+|||||||+|+|
T Consensus 127 ~~~~~l~eGvemi~k~l~~vL~k~GVe~I~~~~G~~FDP~~HEAv~~~~~~~~~~gtVveV~qkGY~l~dRVLRPA~V~V 206 (208)
T PRK14154 127 PQVKSMRDGMSLTLDLLHNTLAKHGVQVINPNPGDPFDPALHEAMSVQAVPDAKPDTIIQVLQKGYQLNGRVLRAARVIV 206 (208)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHCCCEEecCCCCCCCChhHhheeeeeCCCCCCcCEEEEEeeCCcEeCCEEecceEEEe
Confidence 3457899999999999999999999999998 699999999999999999999999999999999999999999999999
Q ss_pred e
Q 018372 343 T 343 (357)
Q Consensus 343 s 343 (357)
+
T Consensus 207 a 207 (208)
T PRK14154 207 A 207 (208)
T ss_pred C
Confidence 7
No 22
>PRK10325 heat shock protein GrpE; Provisional
Probab=100.00 E-value=2.1e-44 Score=330.70 Aligned_cols=139 Identities=40% Similarity=0.619 Sum_probs=129.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhhhhhhhcccCCCCCCCCCchhhHHHHHHHHH
Q 018372 195 MQDKVLRSFAEMENVKDRTIREAENSKKFAIQNFAKALLDVADNLGRASSVVKENFLKIDPSNDTAGAVPLLKSLLEGVE 274 (357)
Q Consensus 195 lkDk~lR~~AEfEN~RKR~~rE~e~akk~Aie~f~kdLLpVlDnLERAle~~~e~~~k~d~s~d~a~~n~~lksl~eGVe 274 (357)
++|+|+|++|||+|||||++||++++++||+++|+++||||+|||+||+.+... + +..+++|++||+
T Consensus 58 ~~d~~lR~~Ae~eN~rkR~~ke~~~~~~~a~~~~~~~lLpv~DnlerAl~~~~~---------~----~~~~~~l~~Gv~ 124 (197)
T PRK10325 58 ERDGILRVKAEMENLRRRTELDIEKAHKFALEKFINELLPVIDSLDRALEVADK---------A----NPDMSAMVEGIE 124 (197)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHhcccc---------c----chhHHHHHHHHH
Confidence 589999999999999999999999999999999999999999999999986421 0 123578999999
Q ss_pred HHHHHHHHHHHhCCCeeeCCCCCCCCccccceeeeccCCCCCCCceEEEeeccceeCCEeeeecEEEeecCC
Q 018372 275 MTEKQLGEVFKKFGVEKFDPINEPFDPHRHNAMFQLPDNSKPPGTVAHVLKSGYTLYERVIRPAEVGVTQAV 346 (357)
Q Consensus 275 Mi~kqL~~vL~k~GVe~IepvGe~FDPnlHEAV~~v~~~e~e~gtVveVlqkGY~L~dRVLRPA~VvVsK~~ 346 (357)
||+++|.++|+++||++|+++|++|||++|+||+++++++.++|+|++|+|+||+|+|||||||+|+|++++
T Consensus 125 m~~~~l~~~L~~~Gv~~i~~~G~~FDP~~HEAv~~~~~~~~~~~~Vv~v~qkGY~l~drvlRpA~V~Vsk~~ 196 (197)
T PRK10325 125 LTLKSMLDVVRKFGVEVIAETNVPLDPNVHQAIAMVESDDVAPGNVLGIMQKGYTLNGRTIRAAMVTVAKAK 196 (197)
T ss_pred HHHHHHHHHHHHCcCeeeCCCCCCCChhHhceeeeeCCCCCCcCeEEEEeeCCcEeCCEeccCceEEeCCCC
Confidence 999999999999999999999999999999999999999999999999999999999999999999999854
No 23
>PRK14149 heat shock protein GrpE; Provisional
Probab=100.00 E-value=3.1e-44 Score=328.37 Aligned_cols=146 Identities=34% Similarity=0.510 Sum_probs=134.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhhhhhhhcccCCCCCCCCCchh
Q 018372 185 LMAKNEEMKQMQDKVLRSFAEMENVKDRTIREAENSKKFAIQNFAKALLDVADNLGRASSVVKENFLKIDPSNDTAGAVP 264 (357)
Q Consensus 185 L~e~~~EleelkDk~lR~~AEfEN~RKR~~rE~e~akk~Aie~f~kdLLpVlDnLERAle~~~e~~~k~d~s~d~a~~n~ 264 (357)
++.+++++++++++|+|++|||+|||||+++|++++++||+++|+++||||+|+|+||+.+... +.
T Consensus 45 ~~~l~~e~~elkd~~lR~~AefEN~rKR~~kE~e~~~~~a~~~~~~~LLpVlDnLerAl~~~~~--------------~~ 110 (191)
T PRK14149 45 KEDFELKYKEMHEKYLRVHADFENVKKRLERDKSMALEYAYEKIALDLLPVIDALLGALKSAAE--------------VD 110 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHhcccc--------------cc
Confidence 4556778889999999999999999999999999999999999999999999999999986532 11
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhCCCeeeCCCCCCCCccccceeeeccCCCCCCCceEEEeeccceeCCEeeeecEEEeec
Q 018372 265 LLKSLLEGVEMTEKQLGEVFKKFGVEKFDPINEPFDPHRHNAMFQLPDNSKPPGTVAHVLKSGYTLYERVIRPAEVGVTQ 344 (357)
Q Consensus 265 ~lksl~eGVeMi~kqL~~vL~k~GVe~IepvGe~FDPnlHEAV~~v~~~e~e~gtVveVlqkGY~L~dRVLRPA~VvVsK 344 (357)
...+|++||+||+++|.++|+++||++|++.| +|||++|+||+++++++.++|||++|+|+||+|+|||||||+|+|++
T Consensus 111 ~~~~l~~Gv~mi~k~l~~vL~k~GV~~I~~~G-~FDP~~HEAv~~v~~~~~~~gtVv~V~QkGY~l~dRVLRPA~V~Vak 189 (191)
T PRK14149 111 KESALTKGLELTMEKLHEVLARHGIEGIECLE-EFDPNFHNAIMQVKSEEKENGKIVQVLQQGYKYKGRVLRPAMVSIAK 189 (191)
T ss_pred chHHHHHHHHHHHHHHHHHHHHCCCEEeCCCC-CCChHHhheeeeecCCCCCcCEEEEEeeCCcEeCCEEeeccEEEeCC
Confidence 24679999999999999999999999999999 59999999999999999999999999999999999999999999998
Q ss_pred C
Q 018372 345 A 345 (357)
Q Consensus 345 ~ 345 (357)
+
T Consensus 190 ~ 190 (191)
T PRK14149 190 N 190 (191)
T ss_pred C
Confidence 3
No 24
>PRK14157 heat shock protein GrpE; Provisional
Probab=100.00 E-value=3.6e-43 Score=328.28 Aligned_cols=141 Identities=30% Similarity=0.490 Sum_probs=132.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhhhhhhhcccCCCCCCCCCch
Q 018372 184 LLMAKNEEMKQMQDKVLRSFAEMENVKDRTIREAENSKKFAIQNFAKALLDVADNLGRASSVVKENFLKIDPSNDTAGAV 263 (357)
Q Consensus 184 ~L~e~~~EleelkDk~lR~~AEfEN~RKR~~rE~e~akk~Aie~f~kdLLpVlDnLERAle~~~e~~~k~d~s~d~a~~n 263 (357)
.+..+++++++++++|+|++|||+|||||++||++++++|++++|+++||||+|||+||+.+.
T Consensus 85 ~l~~le~e~~e~kd~llR~~AEfeNyRKR~~rE~e~~~~~a~~~~~~dLLpvlDnLeRAl~~~----------------- 147 (227)
T PRK14157 85 PLGQAKKEAAEYLEALQRERAEFINYRNRTQKEQDRFRQHGIIDVLTALLPALDDIDRIREHS----------------- 147 (227)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHhcc-----------------
Confidence 345567888999999999999999999999999999999999999999999999999999743
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhCCCeeeCCCCCCCCccccceeeeccCCCCCCCceEEEeeccceeCCEeeeecEEEee
Q 018372 264 PLLKSLLEGVEMTEKQLGEVFKKFGVEKFDPINEPFDPHRHNAMFQLPDNSKPPGTVAHVLKSGYTLYERVIRPAEVGVT 343 (357)
Q Consensus 264 ~~lksl~eGVeMi~kqL~~vL~k~GVe~IepvGe~FDPnlHEAV~~v~~~e~e~gtVveVlqkGY~L~dRVLRPA~VvVs 343 (357)
.+.+||+||+++|.++|+++||++|+++|++|||++||||++++++++++|||++|+|+||+|||||||||+|+|+
T Consensus 148 ----~~~~~~~~i~k~l~~vL~k~GVe~I~~~Ge~FDP~~HEAV~~~~~~~~~~gtVi~V~QkGY~l~dRVLRPA~V~Va 223 (227)
T PRK14157 148 ----EMDDSFKAVAAKIDKAFEKFGVEKFGEKGEDFDPTKHDAILHKPDPDAEKETVDTVVEAGYRIGDRVIRAARVVVA 223 (227)
T ss_pred ----ccchHHHHHHHHHHHHHHHCCCEEeCCCCCCCChhhhceeeeecCCCCCcCEEEEEeeCCceeCCEeccCceEEeC
Confidence 1346889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cC
Q 018372 344 QA 345 (357)
Q Consensus 344 K~ 345 (357)
++
T Consensus 224 k~ 225 (227)
T PRK14157 224 SP 225 (227)
T ss_pred CC
Confidence 83
No 25
>KOG3003 consensus Molecular chaperone of the GrpE family [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=5.8e-43 Score=326.33 Aligned_cols=162 Identities=56% Similarity=0.800 Sum_probs=146.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhhhhhhhcccCCCCCC
Q 018372 179 KEREELLMAKNEEMKQMQDKVLRSFAEMENVKDRTIREAENSKKFAIQNFAKALLDVADNLGRASSVVKENFLKIDPSND 258 (357)
Q Consensus 179 ~e~ee~L~e~~~EleelkDk~lR~~AEfEN~RKR~~rE~e~akk~Aie~f~kdLLpVlDnLERAle~~~e~~~k~d~s~d 258 (357)
+++++.++ ++++..+|+|+|+|..||++|+|+|+.|..++++.||+++|++|||.|.|+|++|++++++.+.+.
T Consensus 74 ~~l~~~~k-~~~e~~eLkdk~~rs~Ad~eNlr~R~~r~~edak~FaiQ~f~kdLleVaD~Le~a~~~v~ee~~~~----- 147 (236)
T KOG3003|consen 74 ALLEKVLK-LEKEEQELKDKYLRSLAECENLRDRTIRDVEDAKKFAIQSFCKDLLEVADNLEKATECVKEESEKE----- 147 (236)
T ss_pred HHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhccc-----
Confidence 33344444 345559999999999999999999999999999999999999999999999999999998753322
Q ss_pred CCCchhhHHHHHHHHHHHHHHHHHHHHhCCCeeeCCCCCCCCccccceeeeccCCCCCCCceEEEeeccceeCCEeeeec
Q 018372 259 TAGAVPLLKSLLEGVEMTEKQLGEVFKKFGVEKFDPINEPFDPHRHNAMFQLPDNSKPPGTVAHVLKSGYTLYERVIRPA 338 (357)
Q Consensus 259 ~a~~n~~lksl~eGVeMi~kqL~~vL~k~GVe~IepvGe~FDPnlHEAV~~v~~~e~e~gtVveVlqkGY~L~dRVLRPA 338 (357)
..+..++.+++|+.||+++|.++|.+||+++++|+|++||||.||||+++|+..+++|||..|.+.||+||||+||||
T Consensus 148 --d~~~~L~~l~eGl~mte~ql~~vf~KhGLekldPigekFDPn~HEAvfq~p~~~k~pgtV~~v~k~Gy~L~~R~IRPA 225 (236)
T KOG3003|consen 148 --DQKKDLKDLFEGLSMTEAQLKEVFAKHGLEKLDPIGEKFDPNEHEAVFQVPDAAKEPGTVALVTKKGYKLNGRVIRPA 225 (236)
T ss_pred --ccchHHHHHHhHHHHHHHHHHHHHHHcCceecCCCCCCCCcchhheeEeccccCCCCCeEEEEeccCcccCCeeechh
Confidence 245679999999999999999999999999999999999999999999999988999999999999999999999999
Q ss_pred EEEeecCCCC
Q 018372 339 EVGVTQAVEN 348 (357)
Q Consensus 339 ~VvVsK~~e~ 348 (357)
+|+|++++++
T Consensus 226 ~VgV~~~~~~ 235 (236)
T KOG3003|consen 226 MVGVVKGGEN 235 (236)
T ss_pred heeeecCCCC
Confidence 9999998875
No 26
>PRK14156 heat shock protein GrpE; Provisional
Probab=100.00 E-value=1.5e-42 Score=314.06 Aligned_cols=155 Identities=34% Similarity=0.502 Sum_probs=137.8
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhhhhhhh
Q 018372 170 SRDDLVKLLKEREELLMAKNEEMKQMQDKVLRSFAEMENVKDRTIREAENSKKFAIQNFAKALLDVADNLGRASSVVKEN 249 (357)
Q Consensus 170 s~deL~klv~e~ee~L~e~~~EleelkDk~lR~~AEfEN~RKR~~rE~e~akk~Aie~f~kdLLpVlDnLERAle~~~e~ 249 (357)
+.+++....+. ...|+.+++++++++++|+|++|||+|||||+++|++++++||.++|+++||||+|||+||+.+...
T Consensus 22 ~~~~~~~~~~~-~~~l~~l~~e~~elkd~~lR~~AEfeN~rKR~~rE~e~~~~~a~~~~~~~LLpVlDnLerAl~~~~~- 99 (177)
T PRK14156 22 TVEEVVEETPE-KSELELANERADEFENKYLRAHAEMQNIQRRANEERQQLQRYRSQDLAKAILPSLDNLERALAVEGL- 99 (177)
T ss_pred HHHHHHhhccc-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHhCccc-
Confidence 45555544443 4456778899999999999999999999999999999999999999999999999999999975321
Q ss_pred cccCCCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHhCCCeeeCCCCCCCCccccceeeeccCC-CCCCCceEEEeeccc
Q 018372 250 FLKIDPSNDTAGAVPLLKSLLEGVEMTEKQLGEVFKKFGVEKFDPINEPFDPHRHNAMFQLPDN-SKPPGTVAHVLKSGY 328 (357)
Q Consensus 250 ~~k~d~s~d~a~~n~~lksl~eGVeMi~kqL~~vL~k~GVe~IepvGe~FDPnlHEAV~~v~~~-e~e~gtVveVlqkGY 328 (357)
..+|++||+||+++|.++|+++||++|++. +|||++|+||++++++ ++++|+|++|+|+||
T Consensus 100 ----------------~~~l~~Gv~mi~k~l~~~L~~~GV~~i~~~--~FDP~~HEAv~~~~~~~~~~~gtVv~V~qkGY 161 (177)
T PRK14156 100 ----------------TDDVKKGLEMVQESLIQALKEEGVEEVAVD--SFDHNLHMAVQTLPADDEHPADSIAQVFQKGY 161 (177)
T ss_pred ----------------chhHHHHHHHHHHHHHHHHHHCCCeecCCC--CCChhHhhcceeecCCCCCCcCEEEEEeeCCc
Confidence 136899999999999999999999999985 9999999999999864 589999999999999
Q ss_pred eeCCEeeeecEEEeec
Q 018372 329 TLYERVIRPAEVGVTQ 344 (357)
Q Consensus 329 ~L~dRVLRPA~VvVsK 344 (357)
+|||||||||+|+|++
T Consensus 162 ~l~dRVLRpA~V~Va~ 177 (177)
T PRK14156 162 KLHERLLRPAMVVVYN 177 (177)
T ss_pred EeCCEEeecceeEeCC
Confidence 9999999999999974
No 27
>PRK14142 heat shock protein GrpE; Provisional
Probab=100.00 E-value=1.8e-41 Score=315.83 Aligned_cols=144 Identities=26% Similarity=0.401 Sum_probs=129.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhhhhhhhcccCCCCCCCCCchhhHHH
Q 018372 189 NEEMKQMQDKVLRSFAEMENVKDRTIREAENSKKFAIQNFAKALLDVADNLGRASSVVKENFLKIDPSNDTAGAVPLLKS 268 (357)
Q Consensus 189 ~~EleelkDk~lR~~AEfEN~RKR~~rE~e~akk~Aie~f~kdLLpVlDnLERAle~~~e~~~k~d~s~d~a~~n~~lks 268 (357)
.+++++|+++|+|++|||+|||||++||++++++||+++|+++||||+|||+||+.+... +
T Consensus 46 ~~e~~elkdk~lR~~AEfEN~RKR~erE~e~~~~~A~e~~~kdLLpVlDnLERAL~~~~~---------~---------- 106 (223)
T PRK14142 46 EDKVAELTADLQRVQADFANYRKRALRDQQAAADRAKASVVSQLLGVLDDLERARKHGDL---------E---------- 106 (223)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHhHHHHHHhcccc---------c----------
Confidence 456778899999999999999999999999999999999999999999999999975321 0
Q ss_pred HHHHHHHHHHHHHHHHHhCCCeeeCCCCCCCCccccceeeeccCCCCC-CCceEEEeeccceeCCEeeeecEEEeecCCC
Q 018372 269 LLEGVEMTEKQLGEVFKKFGVEKFDPINEPFDPHRHNAMFQLPDNSKP-PGTVAHVLKSGYTLYERVIRPAEVGVTQAVE 347 (357)
Q Consensus 269 l~eGVeMi~kqL~~vL~k~GVe~IepvGe~FDPnlHEAV~~v~~~e~e-~gtVveVlqkGY~L~dRVLRPA~VvVsK~~e 347 (357)
..+|.||+++|.++|+++||++|+++|++|||++||||+++++++.+ .|+|++|+|+||+|+|||||||+|+|++.+.
T Consensus 107 -~~~v~~I~kqL~~iLek~GVe~I~~~Ge~FDP~~HEAv~~ve~~e~~~~~tVveV~QkGYkL~dRVLRPA~V~Vsk~~~ 185 (223)
T PRK14142 107 -SGPLKSVADKLDSALTGLGLVAFGAEGEDFDPVLHEAVQHEGDGGQGSKPVIGTVMRQGYQLGEQVLRHALVGVVDTVV 185 (223)
T ss_pred -cHHHHHHHHHHHHHHHHCCCEEeCCCCCCCChhhhceeeeecCCCCCCCCEEEEEecCCcEeCCEeccCceEEECCCCC
Confidence 13578999999999999999999999999999999999999988764 6799999999999999999999999999876
Q ss_pred Ccccc
Q 018372 348 NDRAE 352 (357)
Q Consensus 348 ~~~~~ 352 (357)
...++
T Consensus 186 ~~~~~ 190 (223)
T PRK14142 186 VDAAE 190 (223)
T ss_pred CCccc
Confidence 55443
No 28
>PRK14164 heat shock protein GrpE; Provisional
Probab=100.00 E-value=1.4e-40 Score=309.70 Aligned_cols=138 Identities=28% Similarity=0.394 Sum_probs=126.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhhhhhhhcccCCCCCCCCCchh
Q 018372 185 LMAKNEEMKQMQDKVLRSFAEMENVKDRTIREAENSKKFAIQNFAKALLDVADNLGRASSVVKENFLKIDPSNDTAGAVP 264 (357)
Q Consensus 185 L~e~~~EleelkDk~lR~~AEfEN~RKR~~rE~e~akk~Aie~f~kdLLpVlDnLERAle~~~e~~~k~d~s~d~a~~n~ 264 (357)
+..+++++++++++|+|++|||+|||||++||++++++|++++|+++||||+|||+||+.+..
T Consensus 79 ~~~le~el~el~d~llR~~AE~eN~RkR~~rE~e~~~~~a~~~~~~~LLpVlDnLerAl~~~~----------------- 141 (218)
T PRK14164 79 ASTVEAQLAERTEDLQRVTAEYANYRRRTERERQAIIETAKAGVATDLLPILDDLDLAEQHGD----------------- 141 (218)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHhccc-----------------
Confidence 455678889999999999999999999999999999999999999999999999999997531
Q ss_pred hHHHHHHH-HHHHHHHHHHHHHhCCCeeeCCCCCCCCccccceeeeccCCCCCCCceEEEeeccceeCCEeeeecEEEee
Q 018372 265 LLKSLLEG-VEMTEKQLGEVFKKFGVEKFDPINEPFDPHRHNAMFQLPDNSKPPGTVAHVLKSGYTLYERVIRPAEVGVT 343 (357)
Q Consensus 265 ~lksl~eG-VeMi~kqL~~vL~k~GVe~IepvGe~FDPnlHEAV~~v~~~e~e~gtVveVlqkGY~L~dRVLRPA~VvVs 343 (357)
+.+| |.||+++|.++|+++||++|+++|++|||++||||+++++++ .++|+.|+|+||+|||||||||+|+|+
T Consensus 142 ----~~~g~l~~i~~~l~~vL~k~Gve~I~~~Ge~FDP~~HEAV~~~~~~~--~~~V~~V~qkGY~l~dRVLRPA~V~Va 215 (218)
T PRK14164 142 ----LNEGPLKAFSDKLTNVLAGLKVEKFGEEGDAFDPEIHEAVQDLSSGD--EKVLGTVLRKGYRMGDRVLRTAMVIIA 215 (218)
T ss_pred ----ccccHHHHHHHHHHHHHHHCCCEEeCCCCCCCChhHhheeeeecCCC--CCEeeEEeeCCcEECCEeccCceEEeC
Confidence 1233 789999999999999999999999999999999999998764 589999999999999999999999999
Q ss_pred cC
Q 018372 344 QA 345 (357)
Q Consensus 344 K~ 345 (357)
++
T Consensus 216 k~ 217 (218)
T PRK14164 216 DP 217 (218)
T ss_pred CC
Confidence 83
No 29
>cd00446 GrpE GrpE is the adenine nucleotide exchange factor of DnaK (Hsp70)-type ATPases. The GrpE dimer binds to the ATPase domain of Hsp70 catalyzing the dissociation of ADP, which enables rebinding of ATP, one step in the Hsp70 reaction cycle in protein folding. In eukaryotes, only the mitochondrial Hsp70, not the cytosolic form, is GrpE dependent.
Probab=100.00 E-value=2.3e-39 Score=279.91 Aligned_cols=136 Identities=53% Similarity=0.800 Sum_probs=128.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhhhhhhhcccCCCCCCCCCchhhHHHHHHH
Q 018372 193 KQMQDKVLRSFAEMENVKDRTIREAENSKKFAIQNFAKALLDVADNLGRASSVVKENFLKIDPSNDTAGAVPLLKSLLEG 272 (357)
Q Consensus 193 eelkDk~lR~~AEfEN~RKR~~rE~e~akk~Aie~f~kdLLpVlDnLERAle~~~e~~~k~d~s~d~a~~n~~lksl~eG 272 (357)
++++++|+|++|||+|||+|+.++++++++|++++|+++||||+|+|++|+++... .+.++.+.+|
T Consensus 2 ~~~~~~~~r~~ae~~N~rkr~~~e~~~~~~~~~~~~~~~ll~v~D~le~a~~~~~~--------------~~~~~~~~~g 67 (137)
T cd00446 2 EELKDKLLRALAEFENYRKRTEREREEARKYAIEKFAKDLLPVLDNLERALEAAKK--------------EEELKNLVEG 67 (137)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc--------------cchHHHHHHH
Confidence 46789999999999999999999999999999999999999999999999986532 1245789999
Q ss_pred HHHHHHHHHHHHHhCCCeeeCCCCCCCCccccceeeeccCCCCCCCceEEEeeccceeCCEeeeecEEEe
Q 018372 273 VEMTEKQLGEVFKKFGVEKFDPINEPFDPHRHNAMFQLPDNSKPPGTVAHVLKSGYTLYERVIRPAEVGV 342 (357)
Q Consensus 273 VeMi~kqL~~vL~k~GVe~IepvGe~FDPnlHEAV~~v~~~e~e~gtVveVlqkGY~L~dRVLRPA~VvV 342 (357)
|+||+++|.++|.++||++|++.|++|||++|+||+++++++.++|+|++|+++||+++|||||||+|+|
T Consensus 68 ~~~i~~~l~~~L~~~Gv~~i~~~g~~FDp~~Heav~~~~~~~~~~~~I~~v~~~GY~~~~rvlRpA~V~V 137 (137)
T cd00446 68 VEMTLKQLLDVLEKHGVEKIEPEGEPFDPNLHEAVMQVPSPDVEPGTVVEVLQKGYKLGDRVLRPAMVVV 137 (137)
T ss_pred HHHHHHHHHHHHHHCCCEEECCCCCCCCHHHheeeeeecCCCCCcCEEEEEeecCeEECCEEecccEeEC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999997
No 30
>PF01025 GrpE: GrpE; InterPro: IPR000740 Molecular chaperones are a diverse family of proteins that function to protect proteins in the intracellular milieu from irreversible aggregation during synthesis and in times of cellular stress. The bacterial molecular chaperone DnaK is an enzyme that couples cycles of ATP binding, hydrolysis, and ADP release by an N-terminal ATP-hydrolysing domain to cycles of sequestration and release of unfolded proteins by a C-terminal substrate binding domain. In prokaryotes the grpE protein. Dimeric GrpE is the co-chaperone for DnaK, and acts as a nucleotide exchange factor, stimulating the rate of ADP release 5000-fold []. DnaK is itself a weak ATPase; ATP hydrolysis by DnaK is stimulated by its interaction with another co-chaperone, DnaJ. Thus the co-chaperones DnaJ and GrpE are capable of tightly regulating the nucleotide-bound and substrate-bound state of DnaK in ways that are necessary for the normal housekeeping functions and stress-related functions of the DnaK molecular chaperone cycle. The X-ray crystal structure of GrpE in complex with the ATPase domain of DnaK revealed that GrpE is an asymmetric homodimer, bent in a manner that favours extensive contacts with only one DnaKATPase monomer []. GrpE does not actively compete for the atomic positions occupied by the nucleotide. GrpE and ADP mutually reduce one another's affinity for DnaK 200-fold, and ATP instantly dissociates GrpE from DnaK.; GO: 0000774 adenyl-nucleotide exchange factor activity, 0042803 protein homodimerization activity, 0051087 chaperone binding, 0006457 protein folding; PDB: 3A6M_A 4ANI_A 1DKG_B.
Probab=100.00 E-value=2.2e-39 Score=284.64 Aligned_cols=150 Identities=45% Similarity=0.698 Sum_probs=130.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhhhhhhhcccCCCCCCCC
Q 018372 181 REELLMAKNEEMKQMQDKVLRSFAEMENVKDRTIREAENSKKFAIQNFAKALLDVADNLGRASSVVKENFLKIDPSNDTA 260 (357)
Q Consensus 181 ~ee~L~e~~~EleelkDk~lR~~AEfEN~RKR~~rE~e~akk~Aie~f~kdLLpVlDnLERAle~~~e~~~k~d~s~d~a 260 (357)
+++.+..+++++++++++|.|+.|+|+||++|+.++.++++.++.++|+++||+++|+|++|+.+...
T Consensus 16 ~~~~l~~l~~~~~~l~~~~~r~~ae~en~~~r~~~e~~~~~~~~~~~~~~~ll~v~D~l~~a~~~~~~------------ 83 (165)
T PF01025_consen 16 LEEELEELEKEIEELKERLLRLQAEFENYRKRLEKEKEEAKKYALEKFLKDLLPVLDNLERALEAAKS------------ 83 (165)
T ss_dssp CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCC-SH------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc------------
Confidence 34445667788899999999999999999999999999999999999999999999999999987531
Q ss_pred CchhhHHHHHHHHHHHHHHHHHHHHhCCCeeeCCCCCCCCccccceeeeccCCCCCCCceEEEeeccceeCCEeeeecEE
Q 018372 261 GAVPLLKSLLEGVEMTEKQLGEVFKKFGVEKFDPINEPFDPHRHNAMFQLPDNSKPPGTVAHVLKSGYTLYERVIRPAEV 340 (357)
Q Consensus 261 ~~n~~lksl~eGVeMi~kqL~~vL~k~GVe~IepvGe~FDPnlHEAV~~v~~~e~e~gtVveVlqkGY~L~dRVLRPA~V 340 (357)
.+....|.+||.||+++|.++|.++||++|+|.|++|||++|+||+++++++.++|+|++|+++||+++|||||||+|
T Consensus 84 --~~~~~~~~~g~~~~~~~l~~~L~~~Gv~~i~~~G~~FDp~~heav~~~~~~~~~~~~I~~v~~~GY~~~~rvlRpA~V 161 (165)
T PF01025_consen 84 --NEEEESLLEGLEMILKQLEDILEKNGVEEIEPVGEPFDPNLHEAVETVPDPDKEPGTIVEVVRPGYRLGGRVLRPAEV 161 (165)
T ss_dssp --HCTCHHHHHHHHHHHHHHHHHHHTTTEEEE--TSSB--TTTEEEEEEECSSSS-CTBEEEECC-EEEETTEEEE-EEE
T ss_pred --cchHHHHHHHHHHHHHHHHHHHHHCCCEecCCCCCCCCHHHheeheecCcCCCCcCeEEEEEecCEEECCEEeeeeEE
Confidence 112368999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred Eeec
Q 018372 341 GVTQ 344 (357)
Q Consensus 341 vVsK 344 (357)
+|+|
T Consensus 162 ~V~K 165 (165)
T PF01025_consen 162 VVSK 165 (165)
T ss_dssp EEEE
T ss_pred EecC
Confidence 9986
No 31
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=83.25 E-value=4.1 Score=34.84 Aligned_cols=71 Identities=20% Similarity=0.185 Sum_probs=39.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhh
Q 018372 174 LVKLLKEREELLMAKNEEMKQMQDKVLRSFAEMENVKDRTIREAENSKKFAIQNFAKALLDVADNLGRASS 244 (357)
Q Consensus 174 L~klv~e~ee~L~e~~~EleelkDk~lR~~AEfEN~RKR~~rE~e~akk~Aie~f~kdLLpVlDnLERAle 244 (357)
+.+.+..+-+.+.+++.++.++-+.-.+++-|-+++|+|+.+............-...+.+-.|||.+..+
T Consensus 13 le~~l~~l~~~~~~LK~~~~~l~EEN~~L~~EN~~Lr~~l~~~~~~~~~~~~~~~~~~~~~g~~NL~~LY~ 83 (107)
T PF06156_consen 13 LEQQLGQLLEELEELKKQLQELLEENARLRIENEHLRERLEELEQEEEEKEEKKTKKKLGEGRDNLARLYQ 83 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccccccccchHHHHHHHHh
Confidence 33444444444555555666666666677778888888887765521111222233345556666666543
No 32
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=71.92 E-value=66 Score=31.61 Aligned_cols=68 Identities=22% Similarity=0.214 Sum_probs=46.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHh
Q 018372 173 DLVKLLKEREELLMAKNEEMKQMQDKVLRSFAEMENVKDRTIREAENSKKFAIQNFAKALLDVADNLGRA 242 (357)
Q Consensus 173 eL~klv~e~ee~L~e~~~EleelkDk~lR~~AEfEN~RKR~~rE~e~akk~Aie~f~kdLLpVlDnLERA 242 (357)
+++....++.++++++.++..+|.+.+-++.++++..+.|+++=..+. .-++..++.++.-+-+|..-
T Consensus 132 d~ke~~ee~kekl~E~~~EkeeL~~eleele~e~ee~~erlk~le~E~--s~LeE~~~~l~~ev~~L~~r 199 (290)
T COG4026 132 DLKEDYEELKEKLEELQKEKEELLKELEELEAEYEEVQERLKRLEVEN--SRLEEMLKKLPGEVYDLKKR 199 (290)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHhchhHHHHHHHH
Confidence 555666677777788888888999999999999999998886533221 22455566666444445443
No 33
>PTZ00464 SNF-7-like protein; Provisional
Probab=71.89 E-value=93 Score=29.59 Aligned_cols=26 Identities=4% Similarity=0.134 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018372 174 LVKLLKEREELLMAKNEEMKQMQDKV 199 (357)
Q Consensus 174 L~klv~e~ee~L~e~~~EleelkDk~ 199 (357)
|.+.+..++..+..+.+|+..+++.+
T Consensus 23 l~~r~~~l~kKi~~ld~E~~~ak~~~ 48 (211)
T PTZ00464 23 IGGRSEVVDARINKIDAELMKLKEQI 48 (211)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444455555454444
No 34
>PRK13169 DNA replication intiation control protein YabA; Reviewed
Probab=71.57 E-value=17 Score=31.43 Aligned_cols=70 Identities=19% Similarity=0.126 Sum_probs=43.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhh
Q 018372 172 DDLVKLLKEREELLMAKNEEMKQMQDKVLRSFAEMENVKDRTIREAENSKKFAIQNFAKALLDVADNLGRASS 244 (357)
Q Consensus 172 deL~klv~e~ee~L~e~~~EleelkDk~lR~~AEfEN~RKR~~rE~e~akk~Aie~f~kdLLpVlDnLERAle 244 (357)
.++...+..+-+.+..++.++.++-++-.+++-|-+++|+|+.+....... ..--..+.+-.|||.+..+
T Consensus 11 ~~le~~l~~l~~el~~LK~~~~el~EEN~~L~iEN~~Lr~~l~~~~~~~~~---~~~~~~~~~g~~NL~~LY~ 80 (110)
T PRK13169 11 DDLEQNLGVLLKELGALKKQLAELLEENTALRLENDKLRERLEELEAEEPA---KEKKKKEGEGKDNLARLYQ 80 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccc---ccccccccchHHHHHHHHH
Confidence 344455555555566667777777778888889999999999875221100 0001233666788877765
No 35
>KOG0742 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=71.49 E-value=28 Score=37.24 Aligned_cols=20 Identities=30% Similarity=0.210 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 018372 190 EEMKQMQDKVLRSFAEMENV 209 (357)
Q Consensus 190 ~EleelkDk~lR~~AEfEN~ 209 (357)
.+...++|++.|.+++-+|-
T Consensus 150 ~q~arYqD~larkr~~~e~e 169 (630)
T KOG0742|consen 150 QQRARYQDKLARKRYEDELE 169 (630)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 44567888888877776653
No 36
>PF06120 Phage_HK97_TLTM: Tail length tape measure protein; InterPro: IPR009302 This entry consists of the tail length tape measure protein from Bacteriophage HK97 and related sequences from Escherichia coli (strain K12).
Probab=68.30 E-value=1e+02 Score=30.99 Aligned_cols=78 Identities=15% Similarity=0.217 Sum_probs=56.4
Q ss_pred hhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHhhHHHHHH
Q 018372 166 EIELSRDDLVKLLKEREELLMAKNEEMKQMQDKVLRSFAEMENVKDRTIREAENSKK------FAIQNFAKALLDVADNL 239 (357)
Q Consensus 166 e~~ls~deL~klv~e~ee~L~e~~~EleelkDk~lR~~AEfEN~RKR~~rE~e~akk------~Aie~f~kdLLpVlDnL 239 (357)
=..||..+|.-.+.+..+.|.+.++.++++++++..+...+.+|.+.+...-..... ..+..+..++-...+.|
T Consensus 64 l~~Ms~~ql~~~~~k~~~si~~q~~~i~~l~~~i~~l~~~i~~y~~~~~~~~~~~~~~~~n~~~~~~~~t~~la~~t~~L 143 (301)
T PF06120_consen 64 LKEMSSTQLRANIAKAEESIAAQKRAIEDLQKKIDSLKDQIKNYQQQLAEKGITENGYIINHLMSQADATRKLAEATREL 143 (301)
T ss_pred HHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCcchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 378999999999999999999999999999999999999999887654332111111 22345666666666666
Q ss_pred HHhh
Q 018372 240 GRAS 243 (357)
Q Consensus 240 ERAl 243 (357)
..+-
T Consensus 144 ~~~~ 147 (301)
T PF06120_consen 144 AVAQ 147 (301)
T ss_pred HHHH
Confidence 6554
No 37
>COG4467 Regulator of replication initiation timing [Replication, recombination, and repair]
Probab=67.19 E-value=11 Score=32.75 Aligned_cols=70 Identities=19% Similarity=0.072 Sum_probs=45.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHhhHHHHHHHHhhh
Q 018372 173 DLVKLLKEREELLMAKNEEMKQMQDKVLRSFAEMENVKDRTIRE---AENSKKFAIQNFAKALLDVADNLGRASS 244 (357)
Q Consensus 173 eL~klv~e~ee~L~e~~~EleelkDk~lR~~AEfEN~RKR~~rE---~e~akk~Aie~f~kdLLpVlDnLERAle 244 (357)
++...+-++-.++..+++.+.++-+.-..++-|-+++|+|+... ....++. ..-..+..+.+|||.+..+
T Consensus 12 ~le~~l~~l~~el~~lK~~l~~lvEEN~~L~lENe~LR~RL~~~~~e~~~~~k~--~~~~~~~~~~~dnL~~lY~ 84 (114)
T COG4467 12 NLEEQLGVLLAELGGLKQHLGSLVEENTALRLENEKLRERLGEPTLEKTAVKKE--KPAVKKKGEGYDNLARLYQ 84 (114)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhHHHHHHHhCCccccchhhhcc--cccccccCCCchhHHHHHh
Confidence 34444445555556667777777777788889999999999761 1111111 2344557888888888764
No 38
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=62.89 E-value=91 Score=36.39 Aligned_cols=43 Identities=9% Similarity=0.112 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHHHHHHHHhCCCeeeCCCCC---CCCccccceeeec
Q 018372 268 SLLEGVEMTEKQLGEVFKKFGVEKFDPINE---PFDPHRHNAMFQL 310 (357)
Q Consensus 268 sl~eGVeMi~kqL~~vL~k~GVe~IepvGe---~FDPnlHEAV~~v 310 (357)
.|-.-+--++..+..--..+.-.+++|+|. --||.||-||...
T Consensus 472 ~FG~~m~~lL~~I~r~~~~f~~~P~GPlG~~Vtl~~~KWa~aIE~~ 517 (1074)
T KOG0250|consen 472 AFGPNMPQLLRAIERRKRRFQTPPKGPLGKYVTLKEPKWALAIERC 517 (1074)
T ss_pred hcchhhHHHHHHHHHHHhcCCCCCCCCccceeEecCcHHHHHHHHH
Confidence 343334334444444444556678889884 4588888888643
No 39
>COG0711 AtpF F0F1-type ATP synthase, subunit b [Energy production and conversion]
Probab=62.76 E-value=1.2e+02 Score=27.31 Aligned_cols=79 Identities=19% Similarity=0.174 Sum_probs=52.3
Q ss_pred hhhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhh
Q 018372 165 SEIELSRDDLVKLLKEREELLMAKNEEMKQMQDKV-LRSFAEMENVKDRTIREAENSKKFAIQNFAKALLDVADNLGRAS 243 (357)
Q Consensus 165 ~e~~ls~deL~klv~e~ee~L~e~~~EleelkDk~-lR~~AEfEN~RKR~~rE~e~akk~Aie~f~kdLLpVlDnLERAl 243 (357)
.++.-...+...++++.+.++++.+.+..++.+.. .++....+++++..+.+.+..+..+.+.+-...=.+++.|..-.
T Consensus 47 ~~A~~~~~ea~~~~~~~~~~l~~Ar~~a~~Ii~~A~~~a~~~~~e~~~~a~~e~~r~~~~a~~~I~~e~~~a~~~l~~~~ 126 (161)
T COG0711 47 AEAERLKEEAQALLAEYEQELEEAREQASEIIEQAKKEAEQIAEEIKAEAEEELERIKEAAEAEIEAEKERALEELRAEV 126 (161)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444556666666666777777666666654443 35556677888888888888887777777777666666665543
No 40
>cd07627 BAR_Vps5p The Bin/Amphiphysin/Rvs (BAR) domain of yeast Sorting Nexin Vps5p. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. Vsp5p is the yeast counterpart of human SNX1 and is part of the retromer complex, which functions in the endosome-to-Golgi retrieval of vacuolar protein sorting receptor Vps10p, the Golgi-resident membrane protein A-ALP, and endopeptidase Kex2. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in
Probab=61.91 E-value=70 Score=29.79 Aligned_cols=55 Identities=16% Similarity=0.180 Sum_probs=41.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH
Q 018372 183 ELLMAKNEEMKQMQDKVLRSFAEMENVKDRTIREAENSKKFAIQNFAKALLDVAD 237 (357)
Q Consensus 183 e~L~e~~~EleelkDk~lR~~AEfEN~RKR~~rE~e~akk~Aie~f~kdLLpVlD 237 (357)
+.+..++.++.+++.+...+..+|+.+-+.+.+|+..-...-+..|-..|...++
T Consensus 143 ~K~~~~~~ei~~~e~~~~~a~~~~e~is~~~k~El~rF~~~r~~dfk~~l~~~~e 197 (216)
T cd07627 143 EKLNSLLSELEEAERRASELKKEFEEVSELIKSELERFERERVEDFRNSVEIYLE 197 (216)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455677888889999999999999999999999888876666666544444333
No 41
>PF03938 OmpH: Outer membrane protein (OmpH-like); InterPro: IPR005632 This entry includes outer membrane proteins such as OmpH (Skp) among others. OmpH (outer membrane protein H) is a major structural protein of the outer membrane. In Pasteurella multocida it acts as a channel-forming transmembrane porin []. Porins act as molecular sieves to allow the diffusion of small hydrophilic solutes through the outer membrane and also acts as a receptor for bacteriophages and bacteriocins. Porins are highly immunogenic and are conserved in bacterial families, making them attractive vaccine candidates []. The 17kDa protein (Skp, OmpH) of Escherichia coli is a homotrimeric periplasmic chaperone for newly synthesised outer-membrane proteins, the X-ray structure of which has been reported at resolutions of 2.35 A and 2.30 A [, ]. Three hairpin-shaped alpha-helical extensions reach out by approximately 60 A from a trimerisation domain, which is composed of three intersubunit beta-sheets that wind around a central axis. The alpha-helical extensions approach each other at their distal turns, resulting in a fold that resembles a 'three-pronged grasping forcep'. The overall shape of Skp is reminiscent of the cytosolic chaperone prefoldin (IPR009053 from INTERPRO), although it is based on a radically different topology. The peculiar architecture, with apparent plasticity of the prongs and distinct electrostatic and hydrophobic surface properties, supports the recently proposed biochemical mechanism of this chaperone: formation of a Skp(3)-Omp complex protects the outer membrane protein from aggregation during passage through the bacterial periplasm. The ability of Skp to prevent the aggregation of model substrates in vitro is independent of ATP. Skp can interact directly with membrane lipids and lipopolysaccharide. These interactions are needed for efficient Skp-assisted folding of membrane proteins [].; GO: 0051082 unfolded protein binding; PDB: 1SG2_C 1U2M_C.
Probab=61.57 E-value=1.1e+02 Score=26.52 Aligned_cols=48 Identities=8% Similarity=0.210 Sum_probs=35.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHh
Q 018372 195 MQDKVLRSFAEMENVKDRTIREAENSKKFAIQNFAKALLDVADNLGRA 242 (357)
Q Consensus 195 lkDk~lR~~AEfEN~RKR~~rE~e~akk~Aie~f~kdLLpVlDnLERA 242 (357)
+...+.+...++..+....+++...........+...+-++++.+...
T Consensus 81 ~~~~l~~~~~~l~~~~~~~~~~l~~~~~~~~~~i~~~i~~~v~~~a~~ 128 (158)
T PF03938_consen 81 RQQELQQKEQELQQFQQQAQQQLQQEEQELLQPIQKKINKAVEEYAKE 128 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344566777778888888888888888888888888777777766543
No 42
>PF14357 DUF4404: Domain of unknown function (DUF4404)
Probab=60.85 E-value=14 Score=30.26 Aligned_cols=17 Identities=6% Similarity=0.257 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHhCCC
Q 018372 273 VEMTEKQLGEVFKKFGV 289 (357)
Q Consensus 273 VeMi~kqL~~vL~k~GV 289 (357)
+.+|.+.+.++|.+.||
T Consensus 69 l~~~lr~i~~sLa~MGI 85 (85)
T PF14357_consen 69 LAGILRNIMDSLANMGI 85 (85)
T ss_pred HHHHHHHHHHHHHHCCC
Confidence 55778999999999997
No 43
>PRK07352 F0F1 ATP synthase subunit B; Validated
Probab=57.91 E-value=1.4e+02 Score=26.83 Aligned_cols=20 Identities=20% Similarity=0.318 Sum_probs=8.4
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 018372 175 VKLLKEREELLMAKNEEMKQ 194 (357)
Q Consensus 175 ~klv~e~ee~L~e~~~Elee 194 (357)
.+++++.++.|...+++..+
T Consensus 70 ~~~~~~~~~~L~~a~~ea~~ 89 (174)
T PRK07352 70 AQALAEAQQKLAQAQQEAER 89 (174)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444433
No 44
>PRK14472 F0F1 ATP synthase subunit B; Provisional
Probab=56.93 E-value=1.5e+02 Score=26.66 Aligned_cols=18 Identities=28% Similarity=0.495 Sum_probs=7.0
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 018372 176 KLLKEREELLMAKNEEMK 193 (357)
Q Consensus 176 klv~e~ee~L~e~~~Ele 193 (357)
.++++-+..|...+.+..
T Consensus 70 ~~~~e~e~~L~~a~~ea~ 87 (175)
T PRK14472 70 AILRKNRELLAKADAEAD 87 (175)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333333444444333333
No 45
>cd07664 BAR_SNX2 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 2. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. SNX2 is a component of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi. The retromer consists of a cargo-recognition subcomplex and a subcomplex formed by a dimer of sorting nexins (SNX1 and/or SNX2), which ensures effcient cargo sorting by facilitating proper membrane localization
Probab=56.62 E-value=85 Score=30.19 Aligned_cols=54 Identities=17% Similarity=0.309 Sum_probs=42.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Q 018372 183 ELLMAKNEEMKQMQDKVLRSFAEMENVKDRTIREAENSKKFAIQNFAKALLDVA 236 (357)
Q Consensus 183 e~L~e~~~EleelkDk~lR~~AEfEN~RKR~~rE~e~akk~Aie~f~kdLLpVl 236 (357)
.++..++.++.+++.+...+..+|+.+.+++.+|+..-...-+.+|-..|...+
T Consensus 159 dK~~~~~~ev~~~e~~~~~a~~~fe~Is~~~k~El~rFe~er~~dfk~~l~~fl 212 (234)
T cd07664 159 DKLQQAKDEIKEWEAKVQQGERDFEQISKTIRKEVGRFEKERVKDFKTVIIKYL 212 (234)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566778888999999999999999999999999888776666655554443
No 46
>cd07623 BAR_SNX1_2 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexins 1 and 2. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. This subfamily consists of SNX1, SNX2, and similar proteins. SNX1 and SNX2 are components of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi. The retromer consists of a cargo-recognition subcomplex and a subcomplex formed by a dimer of sorting nexins (SNX1 and/or SNX2), wh
Probab=55.02 E-value=1.9e+02 Score=27.23 Aligned_cols=51 Identities=24% Similarity=0.360 Sum_probs=40.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH
Q 018372 185 LMAKNEEMKQMQDKVLRSFAEMENVKDRTIREAENSKKFAIQNFAKALLDV 235 (357)
Q Consensus 185 L~e~~~EleelkDk~lR~~AEfEN~RKR~~rE~e~akk~Aie~f~kdLLpV 235 (357)
+..++.++.+++.+...+..+|+++..++.+|+..-...-+.+|=..|...
T Consensus 151 ~~~~~~ev~~~e~~~~~a~~~fe~is~~~k~El~rF~~erv~dfk~~l~~~ 201 (224)
T cd07623 151 LDQAQQEIKEWEAKVDRGQKEFEEISKTIKKEIERFEKNRVKDFKDIIIKY 201 (224)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555678888889999999999999999999999888776666665555443
No 47
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=54.63 E-value=2.9e+02 Score=30.67 Aligned_cols=70 Identities=16% Similarity=0.101 Sum_probs=39.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhhHHHHHHHHhhh
Q 018372 175 VKLLKEREELLMAKNEEMKQMQDKVLRSFAEMENVKDRTIREAENSKKF-AIQNFAKALLDVADNLGRASS 244 (357)
Q Consensus 175 ~klv~e~ee~L~e~~~EleelkDk~lR~~AEfEN~RKR~~rE~e~akk~-Aie~f~kdLLpVlDnLERAle 244 (357)
.+.+..+++.++.++.++.+|+..+.++.++.++++.++.+=..+.+.. .+..=+..+-.-++.|++.+.
T Consensus 421 ~~~i~~~~~~ve~l~~e~~~L~~~~ee~k~eie~L~~~l~~~~r~~~~~~~~~rei~~~~~~I~~L~~~L~ 491 (652)
T COG2433 421 EKRIKKLEETVERLEEENSELKRELEELKREIEKLESELERFRREVRDKVRKDREIRARDRRIERLEKELE 491 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHH
Confidence 4445555666666667777777777666677766666554444333322 222334445556666666654
No 48
>PRK14159 heat shock protein GrpE; Provisional
Probab=53.53 E-value=1.9e+02 Score=26.87 Aligned_cols=66 Identities=12% Similarity=-0.001 Sum_probs=38.7
Q ss_pred chhhhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018372 163 SESEIELSRDDLVKLLKEREELLMAKNEEMKQMQDKVLRSFAEMENVKDRTIREAENSKKFAIQNF 228 (357)
Q Consensus 163 ~~~e~~ls~deL~klv~e~ee~L~e~~~EleelkDk~lR~~AEfEN~RKR~~rE~e~akk~Aie~f 228 (357)
++++..+...++.++.+++.+.......-.+++.+.-.|+..|.+.+++..........--.+.+|
T Consensus 21 ~~~~~~~~~~~i~~l~~e~~elkd~~lR~~AdfeN~rkR~~rE~e~~~~~a~~~~~~~LLpV~Dnl 86 (176)
T PRK14159 21 DENLQNIEDVEQNKLQKDYDELKDKYMRANAEFENIKKRMEKEKLSAMAYANESFAKDLLDVLDAL 86 (176)
T ss_pred hhhHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhHH
Confidence 345556666666555444444434444455677777778888888888777666544443333333
No 49
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=53.49 E-value=1.6e+02 Score=33.04 Aligned_cols=10 Identities=20% Similarity=0.302 Sum_probs=6.3
Q ss_pred CCCceEEEee
Q 018372 316 PPGTVAHVLK 325 (357)
Q Consensus 316 e~gtVveVlq 325 (357)
..|+|+++-.
T Consensus 650 ~~g~v~~i~~ 659 (782)
T PRK00409 650 QKGEVLSIPD 659 (782)
T ss_pred ceEEEEEEcC
Confidence 3577777654
No 50
>PF12761 End3: Actin cytoskeleton-regulatory complex protein END3
Probab=53.32 E-value=80 Score=30.00 Aligned_cols=24 Identities=25% Similarity=0.187 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 018372 171 RDDLVKLLKEREELLMAKNEEMKQ 194 (357)
Q Consensus 171 ~deL~klv~e~ee~L~e~~~Elee 194 (357)
..-|.+.+++++++|...+++...
T Consensus 98 evrLkrELa~Le~~l~~~~~~~~~ 121 (195)
T PF12761_consen 98 EVRLKRELAELEEKLSKVEQAAES 121 (195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344667777777777666555544
No 51
>PRK05759 F0F1 ATP synthase subunit B; Validated
Probab=53.30 E-value=1.5e+02 Score=25.69 Aligned_cols=119 Identities=12% Similarity=0.143 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhhhhhhhcccC
Q 018372 174 LVKLLKEREELLMAKNEEMKQMQDKVLRSFAEMENVKDRTIREAENSKKFAIQNFAKALLDVADNLGRASSVVKENFLKI 253 (357)
Q Consensus 174 L~klv~e~ee~L~e~~~EleelkDk~lR~~AEfEN~RKR~~rE~e~akk~Aie~f~kdLLpVlDnLERAle~~~e~~~k~ 253 (357)
|.+.+.++...+...-.+.++.+.+....++++++-..-...+...+...+....-...-.+++....-.+....
T Consensus 29 i~~~l~~R~~~I~~~l~~a~~~~~~a~~~~~e~~~~l~~a~~ea~~i~~~a~~ea~~~~~~~~~~a~~ea~~~~~----- 103 (156)
T PRK05759 29 IMKALEERQKKIADGLAAAERAKKELELAQAKYEAQLAEARAEAAEIIEQAKKRAAQIIEEAKAEAEAEAARIKA----- 103 (156)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----
Q ss_pred CCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHhCCCeeeCC-CCCCCCcccccee
Q 018372 254 DPSNDTAGAVPLLKSLLEGVEMTEKQLGEVFKKFGVEKFDP-INEPFDPHRHNAM 307 (357)
Q Consensus 254 d~s~d~a~~n~~lksl~eGVeMi~kqL~~vL~k~GVe~Iep-vGe~FDPnlHEAV 307 (357)
..-..+..--.-..+++.+-.....+.-..- +|+..|+..|..+
T Consensus 104 ----------~a~~~i~~e~~~a~~~l~~~~~~lA~~~a~k~l~~~~d~~~~~~~ 148 (156)
T PRK05759 104 ----------QAQAEIEQERKRAREELRKQVADLAVAGAEKILGRELDAAAQSDL 148 (156)
T ss_pred ----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHcCHHHHHHH
No 52
>TIGR03321 alt_F1F0_F0_B alternate F1F0 ATPase, F0 subunit B. CC and in principle may run in either direction. This model represents the F0 subunit B of this apparent second ATP synthase.
Probab=51.98 E-value=2.2e+02 Score=27.12 Aligned_cols=102 Identities=8% Similarity=0.068 Sum_probs=52.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhhhhhhhcccCCCCCCCCCchhhHHHHHHHHHHH-
Q 018372 198 KVLRSFAEMENVKDRTIREAENSKKFAIQNFAKALLDVADNLGRASSVVKENFLKIDPSNDTAGAVPLLKSLLEGVEMT- 276 (357)
Q Consensus 198 k~lR~~AEfEN~RKR~~rE~e~akk~Aie~f~kdLLpVlDnLERAle~~~e~~~k~d~s~d~a~~n~~lksl~eGVeMi- 276 (357)
.+..++++.+.++.+...+++..+..+...+-..+..+. +..|-..+... + +.......+..+++++.-.
T Consensus 91 i~~~A~~ea~~~~~~a~~~ie~E~~~a~~~l~~ei~~la--~~~A~kil~~~---~----d~~~~~~lid~~i~~l~~l~ 161 (246)
T TIGR03321 91 LLDEAREEADEIREKWQEALRREQAALSDELRRRTGAEV--FAIARKVLTDL---A----DTDLEERMVDVFVQRLRTLD 161 (246)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHh---c----ChHHHHHHHHHHHHHhhcCC
Confidence 345666777777777777777777777777766666554 22233333221 1 1111122344555554322
Q ss_pred ---HHHHHHHHHhCCCeeeCCCCCCCCccccceee
Q 018372 277 ---EKQLGEVFKKFGVEKFDPINEPFDPHRHNAMF 308 (357)
Q Consensus 277 ---~kqL~~vL~k~GVe~IepvGe~FDPnlHEAV~ 308 (357)
...|...+..-|....-...-|.+|...+.+.
T Consensus 162 ~~~~~~l~~~~~~~~~~~~v~sa~~l~~~~~~~i~ 196 (246)
T TIGR03321 162 PDEKAALAEALADSGNPVLVRSAFELPEEQREQIR 196 (246)
T ss_pred HHHHHHHHHHHhCCCCceEEEecCCCCHHHHHHHH
Confidence 23344555665533222235667776655443
No 53
>PF13805 Pil1: Eisosome component PIL1; PDB: 3PLT_B.
Probab=51.92 E-value=2.6e+02 Score=27.91 Aligned_cols=59 Identities=20% Similarity=0.186 Sum_probs=41.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhhhhh
Q 018372 189 NEEMKQMQDKVLRSFAEMENVKDRTIREAENSKKFAIQNFAKALLDVADNLGRASSVVK 247 (357)
Q Consensus 189 ~~EleelkDk~lR~~AEfEN~RKR~~rE~e~akk~Aie~f~kdLLpVlDnLERAle~~~ 247 (357)
+.|+..+....+-+-|.+.|++|..-||.-.++-.|+..++..++=+...=.+.+..++
T Consensus 171 eqELvraEae~lvaEAqL~n~kR~~lKEa~~~~f~Al~E~aEK~~Ila~~gk~Ll~lld 229 (271)
T PF13805_consen 171 EQELVRAEAENLVAEAQLSNIKRQKLKEAYSLKFDALIERAEKQAILAEYGKRLLELLD 229 (271)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS-
T ss_pred HHHHHHHHHHhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 33343344444445577999999999999999999999999888876665454555443
No 54
>PF07795 DUF1635: Protein of unknown function (DUF1635); InterPro: IPR012862 The members of this family include sequences that are parts of hypothetical proteins expressed by plant species. The region in question is about 170 amino acids long.
Probab=51.66 E-value=1.7e+02 Score=28.27 Aligned_cols=55 Identities=18% Similarity=0.268 Sum_probs=30.8
Q ss_pred CHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018372 170 SRDDLVKLLKEREELLMA----KNEEMKQMQDKVLRSFAEMENVKDRTIREAENSKKFAIQNF 228 (357)
Q Consensus 170 s~deL~klv~e~ee~L~e----~~~EleelkDk~lR~~AEfEN~RKR~~rE~e~akk~Aie~f 228 (357)
++|||...+.-..-+|+. .++|+...+ -..+.+.|+-+++.+|+++++.....-+
T Consensus 2 s~EELRq~Ll~TTlELE~~k~~A~EElRk~e----eqi~~L~~Ll~~a~~ERDEAr~qlq~Ll 60 (214)
T PF07795_consen 2 SMEELRQKLLYTTLELEATKMEANEELRKRE----EQIAHLKDLLKKAYQERDEAREQLQKLL 60 (214)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 678886544322222333 233333222 2335567788888889988887754433
No 55
>PF09457 RBD-FIP: FIP domain ; InterPro: IPR019018 The Rab11 GTPase regulates recycling of internalized plasma membrane receptors and is essential for completion of cytokinesis. A family of Rab11 interacting proteins (FIPs) that conserve a C-terminal Rab-binding domain (RBD) selectively recognise the active form of Rab11. FIPs are diverse in sequence length and composition toward their N-termini, presumably a feature that underpins their specific roles in Rab11-mediated vesicle trafficking. They have been divided into three subfamilies (classe I, II, and III)on the basis of domain architecture. Class I FIPs comprises a subfamily of three proteins (Rip11/pp75/FIP5, Rab-coupling protein (RCP), and FIP2) that possess an N- terminal C2 domain, localize to recycling endosomes, and regulate plasma membrane recycling. The class II subfamily consists of two proteins (FIP3/eferin/arfophilin and FIP4) with tandem EF hands and a proline-rich region. Class II FIPs localize to recycling endosomes, the trans-Golgi network, and have been implicated in the regulation of membrane trafficking during cytokinesis. The class III subfamily consists of a single protein, FIP1, which does not contain obvious homology domains or motifs other than the FIP-RBD [, , , ]. The FIP-RBD domain is also found in Rab6-interacting protein Erc1/Elks. Erc1 is the regulatory subunit of the IKK complex and probably recruits IkappaBalpha/NFKBIA to the complex []. It may be involved in the organisation of the cytomatrix at the nerve terminals active zone (CAZ) which regulates neurotransmitter release. It may also be involved in vesicle trafficking at the CAZ, as well as in Rab-6 regulated endosomes to Golgi transport []. The FIB-RBD domain consists of an N-terminal long alpha-helix, followed by a 90 degrees bend at a conserved proline residue, a 3(10) helix and a C-terminal short beta-strand, adopting an "L" shape. The long alpha-helix forms a parallel coiled-coil homodimer that symmetrically interacts with two Rab11 molecules on both sides, forming a quaternary Rab11-(FIP)2-Rab11 complex. The Rab11-interacting region of FIP-RBD is confined to the C-terminal 24 amino acids, which cover the C-terminal half of the long alpha-helix and the short beta-strand [, , , ]. This entry represents the FIP-RBD domain.; PDB: 2HV8_E 2D7C_D 2K6S_B 2GZD_D 2GZH_B.
Probab=50.79 E-value=64 Score=24.09 Aligned_cols=31 Identities=32% Similarity=0.557 Sum_probs=22.7
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018372 170 SRDDLVKLLKEREELLMAKNEEMKQMQDKVL 200 (357)
Q Consensus 170 s~deL~klv~e~ee~L~e~~~EleelkDk~l 200 (357)
|.+||...+.+.+..+..++.++.+|++.+-
T Consensus 1 s~eeL~~~l~~~e~~~~~k~~~v~eLe~YiD 31 (48)
T PF09457_consen 1 SREELISLLKKQEEENARKDSRVRELEDYID 31 (48)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5678888888888877777777777766543
No 56
>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp
Probab=48.96 E-value=3e+02 Score=27.85 Aligned_cols=68 Identities=21% Similarity=0.218 Sum_probs=41.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHh
Q 018372 172 DDLVKLLKEREELLMAKNEEMKQMQDKVLRSFAEME-NVKDRTIREAENSKKFAIQNFAKALLDVADNLGRA 242 (357)
Q Consensus 172 deL~klv~e~ee~L~e~~~EleelkDk~lR~~AEfE-N~RKR~~rE~e~akk~Aie~f~kdLLpVlDnLERA 242 (357)
--|+..+.+-+..|.+-+.||.+|+-++.|.+-||- .=--|++.+. +.+.| .+=|+.|=.|+|.+.--
T Consensus 71 RHLkakLkes~~~l~dRetEI~eLksQL~RMrEDWIEEECHRVEAQL--ALKEA-RkEIkQLkQvieTmrss 139 (305)
T PF15290_consen 71 RHLKAKLKESENRLHDRETEIDELKSQLARMREDWIEEECHRVEAQL--ALKEA-RKEIKQLKQVIETMRSS 139 (305)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHH-HHHHHHHHHHHHHHHhh
Confidence 334566777778888888899999999999998862 2233333222 12222 22345566666666543
No 57
>PF03194 LUC7: LUC7 N_terminus; InterPro: IPR004882 This family consists of several LUC7 protein homologues that are restricted to eukaryotes. LUC7 has been shown to be a U1 snRNA associated protein [] with a role in splice site recognition []. The entry contains human and mouse LUC7 like (LUC7L) proteins [] and human cisplatin resistance-associated overexpressed protein (CROP) [].
Probab=48.36 E-value=93 Score=30.24 Aligned_cols=44 Identities=23% Similarity=0.194 Sum_probs=32.1
Q ss_pred HHHHHHHhhHHHHHHHHhhhhhhhhcccCCCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHhC
Q 018372 225 IQNFAKALLDVADNLGRASSVVKENFLKIDPSNDTAGAVPLLKSLLEGVEMTEKQLGEVFKKF 287 (357)
Q Consensus 225 ie~f~kdLLpVlDnLERAle~~~e~~~k~d~s~d~a~~n~~lksl~eGVeMi~kqL~~vL~k~ 287 (357)
+-.++-.+|.+.|+-.|.-.++.. .++-|+..|...+..+.++.
T Consensus 192 VCeVCGA~Ls~~D~d~RladH~~G-------------------K~HlGy~~IR~~l~el~e~~ 235 (254)
T PF03194_consen 192 VCEVCGAFLSVGDNDRRLADHFGG-------------------KQHLGYAKIREKLKELKEKR 235 (254)
T ss_pred chhhhhhHHhccchHHHHHHHhcc-------------------chhhhHHHHHHHHHHHHHHH
Confidence 446777899999998888777642 46788888877777666543
No 58
>CHL00019 atpF ATP synthase CF0 B subunit
Probab=48.03 E-value=2.1e+02 Score=25.89 Aligned_cols=119 Identities=8% Similarity=0.097 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhhhhhhhcccC
Q 018372 174 LVKLLKEREELLMAKNEEMKQMQDKVLRSFAEMENVKDRTIREAENSKKFAIQNFAKALLDVADNLGRASSVVKENFLKI 253 (357)
Q Consensus 174 L~klv~e~ee~L~e~~~EleelkDk~lR~~AEfEN~RKR~~rE~e~akk~Aie~f~kdLLpVlDnLERAle~~~e~~~k~ 253 (357)
|.+.+.++.+.+...-.+.++.+.+.....++++....-.+.+..++...|....-...-.+++....-.+....
T Consensus 49 I~~~l~~R~~~I~~~l~~Ae~~~~eA~~~~~e~e~~L~~A~~ea~~ii~~A~~~ae~~~~~il~~A~~ea~~~~~----- 123 (184)
T CHL00019 49 LSDLLDNRKQTILNTIRNSEERREEAIEKLEKARARLRQAELEADEIRVNGYSEIEREKENLINQAKEDLERLEN----- 123 (184)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----
Q ss_pred CCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHhCCCeeeCC-CCCCCCcccccee
Q 018372 254 DPSNDTAGAVPLLKSLLEGVEMTEKQLGEVFKKFGVEKFDP-INEPFDPHRHNAM 307 (357)
Q Consensus 254 d~s~d~a~~n~~lksl~eGVeMi~kqL~~vL~k~GVe~Iep-vGe~FDPnlHEAV 307 (357)
..-..+-.--.-..+++.+-...+.|..-.. +++..|+..|..+
T Consensus 124 ----------~a~~~ie~Ek~~a~~~l~~ei~~lav~~A~kil~~~ld~~~~~~l 168 (184)
T CHL00019 124 ----------YKNETIRFEQQRAINQVRQQVFQLALQRALGTLNSCLNNELHLRT 168 (184)
T ss_pred ----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHcCHHHHHHH
No 59
>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures. The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.
Probab=47.73 E-value=87 Score=24.94 Aligned_cols=20 Identities=30% Similarity=0.376 Sum_probs=8.6
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 018372 176 KLLKEREELLMAKNEEMKQM 195 (357)
Q Consensus 176 klv~e~ee~L~e~~~Eleel 195 (357)
+.++++.+.|..+.++-+.|
T Consensus 5 ~~l~EKDe~Ia~L~eEGekL 24 (74)
T PF12329_consen 5 KKLAEKDEQIAQLMEEGEKL 24 (74)
T ss_pred HHHHhHHHHHHHHHHHHHHH
Confidence 34444444444444443333
No 60
>PRK02793 phi X174 lysis protein; Provisional
Probab=47.53 E-value=1.4e+02 Score=23.65 Aligned_cols=45 Identities=20% Similarity=0.152 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018372 172 DDLVKLLKEREELLMAKNEEMKQMQDKVLRSFAEMENVKDRTIRE 216 (357)
Q Consensus 172 deL~klv~e~ee~L~e~~~EleelkDk~lR~~AEfEN~RKR~~rE 216 (357)
.++...+.++|..+.=.+.-+++|.+-+.+.+.+++.+++.+..=
T Consensus 4 ~~~e~Ri~~LE~~lafQe~tIe~Ln~~v~~Qq~~I~~L~~~l~~L 48 (72)
T PRK02793 4 SSLEARLAELESRLAFQEITIEELNVTVTAHEMEMAKLRDHLRLL 48 (72)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566777777777777777888877777777776666554433
No 61
>PRK14127 cell division protein GpsB; Provisional
Probab=46.59 E-value=1e+02 Score=26.64 Aligned_cols=47 Identities=17% Similarity=0.252 Sum_probs=36.8
Q ss_pred ccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018372 168 ELSRDDLVKLLKEREELLMAKNEEMKQMQDKVLRSFAEMENVKDRTI 214 (357)
Q Consensus 168 ~ls~deL~klv~e~ee~L~e~~~EleelkDk~lR~~AEfEN~RKR~~ 214 (357)
+.+.+|+..-+.+....++.+.+++.+|++++.++.+..+.++.+..
T Consensus 22 GYd~~EVD~FLd~V~~dye~l~~e~~~Lk~e~~~l~~~l~e~~~~~~ 68 (109)
T PRK14127 22 GYDQDEVDKFLDDVIKDYEAFQKEIEELQQENARLKAQVDELTKQVS 68 (109)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 34556666666776777788888899999999999998888888776
No 62
>KOG2911 consensus Uncharacterized conserved protein [Function unknown]
Probab=45.91 E-value=4e+02 Score=28.39 Aligned_cols=40 Identities=18% Similarity=0.277 Sum_probs=31.7
Q ss_pred hhhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018372 165 SEIELSRDDLVKLLKEREELLMAKNEEMKQMQDKVLRSFA 204 (357)
Q Consensus 165 ~e~~ls~deL~klv~e~ee~L~e~~~EleelkDk~lR~~A 204 (357)
++.+.++.+|.+-.+.+..+++.++++++..++++.++.-
T Consensus 229 t~~D~~V~~L~~~~~~L~kqie~L~qeie~~~~~~r~~~k 268 (439)
T KOG2911|consen 229 TEIDGSVADLIQARAKLAKQIEFLEQEIEKSKEKLRQALK 268 (439)
T ss_pred ccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567788888888888888889999999998888775443
No 63
>PRK14150 heat shock protein GrpE; Provisional
Probab=45.82 E-value=1.7e+02 Score=27.46 Aligned_cols=34 Identities=24% Similarity=0.233 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018372 195 MQDKVLRSFAEMENVKDRTIREAENSKKFAIQNF 228 (357)
Q Consensus 195 lkDk~lR~~AEfEN~RKR~~rE~e~akk~Aie~f 228 (357)
++.++..+.+++.+...|+..|.+++++......
T Consensus 46 l~~~l~~~~~~~kd~~lR~~AefeN~rkR~~kE~ 79 (193)
T PRK14150 46 LEAQLAEAQAEERDSVLRARAEVENIRRRAEQDV 79 (193)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333444666666777777777776655443
No 64
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=45.79 E-value=5.7e+02 Score=30.14 Aligned_cols=73 Identities=19% Similarity=0.370 Sum_probs=49.1
Q ss_pred CHHHHHHHHHHHHHHHHHHH--------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018372 170 SRDDLVKLLKEREELLMAKN--------------------EEMKQMQDKVLRSFAEMENVKDRTIREAENSKKFAIQNFA 229 (357)
Q Consensus 170 s~deL~klv~e~ee~L~e~~--------------------~EleelkDk~lR~~AEfEN~RKR~~rE~e~akk~Aie~f~ 229 (357)
+..+|..++.++.++|+.+. +++.+++.++.-.+|+++.--+|...|..++. .+.+...
T Consensus 225 te~eLr~QvrdLtEkLetlR~kR~EDk~Kl~ElekmkiqleqlqEfkSkim~qqa~Lqrel~raR~e~keaq-e~ke~~k 303 (1243)
T KOG0971|consen 225 TEEELRAQVRDLTEKLETLRLKRAEDKAKLKELEKMKIQLEQLQEFKSKIMEQQADLQRELKRARKEAKEAQ-EAKERYK 303 (1243)
T ss_pred chHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHH
Confidence 34456666777766665542 23445566777777777766666666665554 3567788
Q ss_pred HHhhHHHHHHHHhh
Q 018372 230 KALLDVADNLGRAS 243 (357)
Q Consensus 230 kdLLpVlDnLERAl 243 (357)
..|-+..|++|.|.
T Consensus 304 ~emad~ad~iEmaT 317 (1243)
T KOG0971|consen 304 EEMADTADAIEMAT 317 (1243)
T ss_pred HHHHHHHHHHHHHH
Confidence 88999999999884
No 65
>PLN03217 transcription factor ATBS1; Provisional
Probab=45.55 E-value=1.2e+02 Score=25.61 Aligned_cols=56 Identities=16% Similarity=0.199 Sum_probs=39.7
Q ss_pred ccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018372 168 ELSRDDLVKLLKEREELLMAKNEEMKQMQDKVLRSFAEMENVKDRTIREAENSKKF 223 (357)
Q Consensus 168 ~ls~deL~klv~e~ee~L~e~~~EleelkDk~lR~~AEfEN~RKR~~rE~e~akk~ 223 (357)
.++.|++..++..+..+|-+...--..-+---.+.+.|.=||-|.+.+|+.++.+.
T Consensus 16 risddqi~dLvsKLq~llPe~r~~r~s~k~saskvLqEtC~YIrsLhrEvDdLSer 71 (93)
T PLN03217 16 RISEDQINDLIIKLQQLLPELRDSRRSDKVSAARVLQDTCNYIRNLHREVDDLSER 71 (93)
T ss_pred CCCHHHHHHHHHHHHHHChHHHhhhccccccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 78889999999888888766533111112334566778899999999998876643
No 66
>KOG0796 consensus Spliceosome subunit [RNA processing and modification]
Probab=45.43 E-value=2.1e+02 Score=29.21 Aligned_cols=95 Identities=22% Similarity=0.273 Sum_probs=60.0
Q ss_pred HHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHhhHHHHHH
Q 018372 177 LLKEREELLMAKNEEMKQMQ-----DKVLRSFAEMENVKDRTIREAE------------NSKKFAIQNFAKALLDVADNL 239 (357)
Q Consensus 177 lv~e~ee~L~e~~~Eleelk-----Dk~lR~~AEfEN~RKR~~rE~e------------~akk~Aie~f~kdLLpVlDnL 239 (357)
.+.++++.|..+-+++++|- +.-.-+..+.|-++.+-.++.+ +.++..+-.++-.+|.+.|+=
T Consensus 123 ~v~~l~e~I~~~l~~~E~LG~eG~Veeaq~~~~e~E~lk~~e~e~~~~~~~~~~~~~~~~~qkl~VCeVCGa~L~~~D~d 202 (319)
T KOG0796|consen 123 KVHELEEKIGKLLEKAEELGEEGNVEEAQKAMKEVEELKAKEKEEAEESYNTTMPGASAQQQKLRVCEVCGAFLSVNDAD 202 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHccCcchhhhhhhhhhHHHhhhHHHhccchH
Confidence 45555666655555555542 2334445555666641111111 223445567888899999988
Q ss_pred HHhhhhhhhhcccCCCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHhCCCe
Q 018372 240 GRASSVVKENFLKIDPSNDTAGAVPLLKSLLEGVEMTEKQLGEVFKKFGVE 290 (357)
Q Consensus 240 ERAle~~~e~~~k~d~s~d~a~~n~~lksl~eGVeMi~kqL~~vL~k~GVe 290 (357)
.|.-.++. ..++-|+.+|...+.++.+..+..
T Consensus 203 ~RlaDHf~-------------------GKlHlGy~~iR~~l~eLk~~~~~~ 234 (319)
T KOG0796|consen 203 RRLADHFG-------------------GKLHLGYVLIREKLAELKKEKAKR 234 (319)
T ss_pred HHHHHhhc-------------------chHHHHHHHHHHHHHHHHHHHhHH
Confidence 88877763 258899999999999888877763
No 67
>PRK04406 hypothetical protein; Provisional
Probab=45.36 E-value=1.6e+02 Score=23.65 Aligned_cols=46 Identities=11% Similarity=0.179 Sum_probs=34.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018372 171 RDDLVKLLKEREELLMAKNEEMKQMQDKVLRSFAEMENVKDRTIRE 216 (357)
Q Consensus 171 ~deL~klv~e~ee~L~e~~~EleelkDk~lR~~AEfEN~RKR~~rE 216 (357)
.+.+...+.++|..+.-++.-+++|.+-+.+.+.+++.+++.+..=
T Consensus 6 ~~~le~Ri~~LE~~lAfQE~tIe~LN~~v~~Qq~~I~~L~~ql~~L 51 (75)
T PRK04406 6 IEQLEERINDLECQLAFQEQTIEELNDALSQQQLLITKMQDQMKYV 51 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456677888888888777888888888888887777776655443
No 68
>PF09325 Vps5: Vps5 C terminal like; InterPro: IPR015404 Vps5 is a sorting nexin that functions in membrane trafficking. This is the C-terminal dimerisation domain [].
Probab=45.06 E-value=1.8e+02 Score=26.58 Aligned_cols=53 Identities=19% Similarity=0.336 Sum_probs=35.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH
Q 018372 185 LMAKNEEMKQMQDKVLRSFAEMENVKDRTIREAENSKKFAIQNFAKALLDVAD 237 (357)
Q Consensus 185 L~e~~~EleelkDk~lR~~AEfEN~RKR~~rE~e~akk~Aie~f~kdLLpVlD 237 (357)
+..++.++.+++.++..+..+|+.+-+.+.+|++.....-..+|-.-|+..++
T Consensus 165 ~~~~~~ei~~~~~~~~~~~~~~~~is~~~k~E~~rf~~~k~~d~k~~l~~~~~ 217 (236)
T PF09325_consen 165 VEQAENEIEEAERRVEQAKDEFEEISENIKKELERFEKEKVKDFKSMLEEYAE 217 (236)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455667777777777777888887777777777776655555555554443
No 69
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=44.81 E-value=56 Score=31.47 Aligned_cols=34 Identities=15% Similarity=0.215 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018372 182 EELLMAKNEEMKQMQDKVLRSFAEMENVKDRTIR 215 (357)
Q Consensus 182 ee~L~e~~~EleelkDk~lR~~AEfEN~RKR~~r 215 (357)
++...++++|.+++++.|-|+..|..+++.+++.
T Consensus 178 ~~~~~al~Kq~e~~~~EydrLlee~~~Lq~~i~~ 211 (216)
T KOG1962|consen 178 QKKVDALKKQSEGLQDEYDRLLEEYSKLQEQIES 211 (216)
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhc
Confidence 3444556777888888888888888888877653
No 70
>KOG2856 consensus Adaptor protein PACSIN [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton]
Probab=44.75 E-value=3.7e+02 Score=28.42 Aligned_cols=61 Identities=15% Similarity=0.277 Sum_probs=44.2
Q ss_pred CCcchhhhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018372 160 DSDSESEIELSRDDLVKLLKEREELLMAKNEEMKQMQDKVLRSFAEMENVKDRTIREAENSKKFA 224 (357)
Q Consensus 160 ~~~~~~e~~ls~deL~klv~e~ee~L~e~~~EleelkDk~lR~~AEfEN~RKR~~rE~e~akk~A 224 (357)
+.-+..+..+++++++|+... ++..++++..-+.+|...+|++..|.-+.-...+...+..
T Consensus 165 e~n~kaDsSvspeq~kKlqdr----veK~k~evqktkekYektl~el~~yt~~YmE~MeqvFe~C 225 (472)
T KOG2856|consen 165 EQNAKADSSVSPEQLKKLQDR----VEKCKQEVQKTKEKYEKTLAELNKYTPVYMEDMEQVFEQC 225 (472)
T ss_pred HhccccCccCCHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHH
Confidence 444556778899998777443 4455678888899999999999888777766666555443
No 71
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=44.55 E-value=4.5e+02 Score=28.58 Aligned_cols=35 Identities=11% Similarity=0.210 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018372 179 KEREELLMAKNEEMKQMQDKVLRSFAEMENVKDRT 213 (357)
Q Consensus 179 ~e~ee~L~e~~~EleelkDk~lR~~AEfEN~RKR~ 213 (357)
.+.+..+..++.++..++.++.++..+.+.+++.+
T Consensus 431 ~~l~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 465 (650)
T TIGR03185 431 GEAQNELFRSEAEIEELLRQLETLKEAIEALRKTL 465 (650)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333344444444444444444444444444433
No 72
>PRK13460 F0F1 ATP synthase subunit B; Provisional
Probab=44.14 E-value=2.4e+02 Score=25.32 Aligned_cols=119 Identities=12% Similarity=0.081 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhhhhhhhcccC
Q 018372 174 LVKLLKEREELLMAKNEEMKQMQDKVLRSFAEMENVKDRTIREAENSKKFAIQNFAKALLDVADNLGRASSVVKENFLKI 253 (357)
Q Consensus 174 L~klv~e~ee~L~e~~~EleelkDk~lR~~AEfEN~RKR~~rE~e~akk~Aie~f~kdLLpVlDnLERAle~~~e~~~k~ 253 (357)
+.+.+.++.+.+...-.+.++.+.+....+++++.-..-.+.+..++...|....-...-.+++....-.+....
T Consensus 41 i~~~l~~R~~~I~~~l~~Ae~~~~eA~~~~~e~e~~l~~a~~ea~~ii~~A~~ea~~~~~~~~~~A~~ea~~~~~----- 115 (173)
T PRK13460 41 ILKALDERASGVQNDINKASELRLEAEALLKDYEARLNSAKDEANAIVAEAKSDALKLKNKLLEETNNEVKAQKD----- 115 (173)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----
Q ss_pred CCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHhCCCeeeCC-CCCCCCcccccee
Q 018372 254 DPSNDTAGAVPLLKSLLEGVEMTEKQLGEVFKKFGVEKFDP-INEPFDPHRHNAM 307 (357)
Q Consensus 254 d~s~d~a~~n~~lksl~eGVeMi~kqL~~vL~k~GVe~Iep-vGe~FDPnlHEAV 307 (357)
..-..+-.-.+-...+|.+-...+.+.--.- +|...|++.|..+
T Consensus 116 ----------~a~~~ie~e~~~a~~el~~ei~~lA~~~a~kil~~~l~~~~~~~l 160 (173)
T PRK13460 116 ----------QAVKEIELAKGKALSQLQNQIVEMTITIASKVLEKQLKKEDYKAF 160 (173)
T ss_pred ----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHH
No 73
>PF09006 Surfac_D-trimer: Lung surfactant protein D coiled-coil trimerisation; InterPro: IPR015097 This domain is found in the SFTPD family, which includes lung surfactant protein D (SFTPD), conglutinin, collectin-43 and collectin-46. It forms a triple-helical parallel coiled coil, and mediates trimerisation of the protein []. ; PDB: 4DN8_A 3G84_A 2RIE_C 3IKR_B 1B08_A 2GGX_B 2OS9_C 2ORK_B 1PWB_A 2RIA_C ....
Probab=43.77 E-value=60 Score=24.25 Aligned_cols=27 Identities=22% Similarity=0.251 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018372 186 MAKNEEMKQMQDKVLRSFAEMENVKDR 212 (357)
Q Consensus 186 ~e~~~EleelkDk~lR~~AEfEN~RKR 212 (357)
..++.++..|+.++.++++.|.-|||-
T Consensus 2 ~aLrqQv~aL~~qv~~Lq~~fs~yKKa 28 (46)
T PF09006_consen 2 NALRQQVEALQGQVQRLQAAFSQYKKA 28 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346677788888888888888888873
No 74
>PRK06569 F0F1 ATP synthase subunit B'; Validated
Probab=43.75 E-value=1.9e+02 Score=26.40 Aligned_cols=71 Identities=15% Similarity=0.086 Sum_probs=39.9
Q ss_pred ccCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHh
Q 018372 168 ELSRDDLVKLLKEREELLMAKNEEMKQMQDK-VLRSFAEMENVKDRTIREAENSKKFAIQNFAKALLDVADNLGRA 242 (357)
Q Consensus 168 ~ls~deL~klv~e~ee~L~e~~~EleelkDk-~lR~~AEfEN~RKR~~rE~e~akk~Aie~f~kdLLpVlDnLERA 242 (357)
.....+..++.++-++.|...+.+...+... -.++.|+++-=|+.++.+........ ++++.-++|+|.+-
T Consensus 54 e~~k~eAe~l~a~ye~~L~~Ar~eA~~I~~e~~~~~~a~~~~~~~~~ea~L~~~~~~~----~~~~~~~~~~~~~~ 125 (155)
T PRK06569 54 DTLTIEVEKLNKYYNEEIDKTNTEIDRLKKEKIDSLESEFLIKKKNLEQDLKNSINQN----IEDINLAAKQFRTN 125 (155)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHh
Confidence 3344555555555566666666666555444 55666666666666666655554443 34455566666543
No 75
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=43.33 E-value=2.9e+02 Score=31.13 Aligned_cols=9 Identities=22% Similarity=0.645 Sum_probs=5.6
Q ss_pred CCCceEEEe
Q 018372 316 PPGTVAHVL 324 (357)
Q Consensus 316 e~gtVveVl 324 (357)
..|+|+++-
T Consensus 638 ~~g~v~~i~ 646 (771)
T TIGR01069 638 QKGKIVQIL 646 (771)
T ss_pred ceEEEEEEc
Confidence 356777664
No 76
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=43.16 E-value=2.5e+02 Score=26.03 Aligned_cols=50 Identities=14% Similarity=0.146 Sum_probs=31.4
Q ss_pred hccCHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018372 167 IELSRDDLVKLLKEREE----------LLMAKNEEMKQMQDKVLRSFAEMENVKDRTIRE 216 (357)
Q Consensus 167 ~~ls~deL~klv~e~ee----------~L~e~~~EleelkDk~lR~~AEfEN~RKR~~rE 216 (357)
..++.+++...+..+.. +.+.++.++.+|+.++..+.++.+.+.++...=
T Consensus 78 ~~ltl~~vI~fLq~l~~~~~~~~~~~~e~~~l~~e~~~l~~~~e~Le~e~~~L~~~~~~~ 137 (161)
T TIGR02894 78 GSLTLQDVISFLQNLKTTNPSDQALQKENERLKNQNESLQKRNEELEKELEKLRQRLSTI 137 (161)
T ss_pred ccCCHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56889998766655443 334455666666667777777766666655433
No 77
>PRK11637 AmiB activator; Provisional
Probab=42.31 E-value=1.2e+02 Score=31.14 Aligned_cols=46 Identities=9% Similarity=0.148 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018372 176 KLLKEREELLMAKNEEMKQMQDKVLRSFAEMENVKDRTIREAENSK 221 (357)
Q Consensus 176 klv~e~ee~L~e~~~EleelkDk~lR~~AEfEN~RKR~~rE~e~ak 221 (357)
+.+..++..|..++.+++.++.++..+.++++..++.+.+-+..+.
T Consensus 89 ~~i~~~~~~i~~~~~ei~~l~~eI~~~q~~l~~~~~~l~~rlra~Y 134 (428)
T PRK11637 89 RKLRETQNTLNQLNKQIDELNASIAKLEQQQAAQERLLAAQLDAAF 134 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444555555555555555555544444444433333
No 78
>PRK08476 F0F1 ATP synthase subunit B'; Validated
Probab=41.22 E-value=2.5e+02 Score=24.62 Aligned_cols=69 Identities=19% Similarity=0.249 Sum_probs=33.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Q 018372 172 DDLVKLLKEREELLMAKNEEMKQMQDK-VLRSFAEMENVKDRTIREAENSKKFAIQNFAKALLDVADNLG 240 (357)
Q Consensus 172 deL~klv~e~ee~L~e~~~EleelkDk-~lR~~AEfEN~RKR~~rE~e~akk~Aie~f~kdLLpVlDnLE 240 (357)
.++..+.++.++.+...+.+...+.+. ...+.++.+..+....++.+..+..+...+-...-.....|.
T Consensus 55 ~ea~~~~~e~e~~l~~Ar~eA~~~~~~a~~~A~~ea~~~~~~A~~~~~~~~~~a~~~l~~e~~~~~~~l~ 124 (141)
T PRK08476 55 SDVSEIEHEIETILKNAREEANKIRQKAIAKAKEEAEKKIEAKKAELESKYEAFAKQLANQKQELKEQLL 124 (141)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444454444444433332 234445555555555555555555555555555444444443
No 79
>KOG3990 consensus Uncharacterized conserved protein [Function unknown]
Probab=40.92 E-value=2.2e+02 Score=28.57 Aligned_cols=60 Identities=18% Similarity=0.196 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Q 018372 172 DDLVKLLKEREELLMAKNEEMKQMQDKVLRSFAEMENVKDRTIREAENSKKFAIQNFAKALLDVA 236 (357)
Q Consensus 172 deL~klv~e~ee~L~e~~~EleelkDk~lR~~AEfEN~RKR~~rE~e~akk~Aie~f~kdLLpVl 236 (357)
..|+..|+.++.+|.+..+.+-+-..++-.+.||-|+ +++++...+.-++.+.+..-+++
T Consensus 228 ~~lkeeia~Lkk~L~qkdq~ileKdkqisnLKad~e~-----~~~~ek~Hke~v~qL~~k~~~~l 287 (305)
T KOG3990|consen 228 QKLKEEIARLKKLLHQKDQLILEKDKQISNLKADKEY-----QKELEKKHKERVQQLQKKKEESL 287 (305)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHhhhhhhhccCcchhH-----HHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444555555544444444444444445555222 24555555555555555444443
No 80
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=40.70 E-value=2.8e+02 Score=31.24 Aligned_cols=19 Identities=16% Similarity=0.181 Sum_probs=6.9
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 018372 192 MKQMQDKVLRSFAEMENVK 210 (357)
Q Consensus 192 leelkDk~lR~~AEfEN~R 210 (357)
++.+..++.+..++++.-+
T Consensus 539 ~~~~~~e~~~~~~~l~~~~ 557 (782)
T PRK00409 539 AEALLKEAEKLKEELEEKK 557 (782)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333
No 81
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=40.11 E-value=2e+02 Score=28.07 Aligned_cols=46 Identities=15% Similarity=0.211 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018372 178 LKEREELLMAKNEEMKQMQDKVLRSFAEMENVKDRTIREAENSKKF 223 (357)
Q Consensus 178 v~e~ee~L~e~~~EleelkDk~lR~~AEfEN~RKR~~rE~e~akk~ 223 (357)
+.++...++.+++++..+++++.+...++.-++.++.-++..+.+.
T Consensus 112 l~~l~~~~~~l~~~i~~l~~~~~~~e~~~~e~~~~~e~e~~~i~e~ 157 (239)
T COG1579 112 LAELMEEIEKLEKEIEDLKERLERLEKNLAEAEARLEEEVAEIREE 157 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444455566666667777777777777777777776666554
No 82
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=39.62 E-value=3.8e+02 Score=29.54 Aligned_cols=36 Identities=11% Similarity=0.210 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhCCCe-eeCCCCCCCCcc
Q 018372 267 KSLLEGVEMTEKQLGEVFKKFGVE-KFDPINEPFDPH 302 (357)
Q Consensus 267 ksl~eGVeMi~kqL~~vL~k~GVe-~IepvGe~FDPn 302 (357)
....+.++-..-.+.+...+.++. .....|.+|.|+
T Consensus 370 ~~~f~~le~~~~~~~~l~~~i~l~~~~~~~n~~~~pe 406 (581)
T KOG0995|consen 370 EDFFKELEKKFIDLNSLIRRIKLGIAENSKNLERNPE 406 (581)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcCCc
Confidence 445555666666666666666665 334456556654
No 83
>cd07665 BAR_SNX1 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 1. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. SNX1 is a component of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi. The retromer consists of a cargo-recognition subcomplex and a subcomplex formed by a dimer of sorting nexins (SNX1 and/or SNX2), which ensures effcient cargo sorting by facilitating proper membrane localization
Probab=39.56 E-value=2.7e+02 Score=26.95 Aligned_cols=51 Identities=14% Similarity=0.256 Sum_probs=37.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 018372 183 ELLMAKNEEMKQMQDKVLRSFAEMENVKDRTIREAENSKKFAIQNFAKALL 233 (357)
Q Consensus 183 e~L~e~~~EleelkDk~lR~~AEfEN~RKR~~rE~e~akk~Aie~f~kdLL 233 (357)
..+...+.++.+++.+...+..+|+.+-+.+.+|+..-...-+.+|=..++
T Consensus 159 dK~~~a~~Ev~e~e~k~~~a~~~fe~is~~ik~El~rFe~er~~Dfk~~v~ 209 (234)
T cd07665 159 DKLQQAKDEIAEWESRVTQYERDFERISATVRKEVIRFEKEKSKDFKNHII 209 (234)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345556778888888899999999999999999987777655554444333
No 84
>PRK13453 F0F1 ATP synthase subunit B; Provisional
Probab=39.32 E-value=2.9e+02 Score=24.89 Aligned_cols=119 Identities=10% Similarity=0.059 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhhhhhhhcccC
Q 018372 174 LVKLLKEREELLMAKNEEMKQMQDKVLRSFAEMENVKDRTIREAENSKKFAIQNFAKALLDVADNLGRASSVVKENFLKI 253 (357)
Q Consensus 174 L~klv~e~ee~L~e~~~EleelkDk~lR~~AEfEN~RKR~~rE~e~akk~Aie~f~kdLLpVlDnLERAle~~~e~~~k~ 253 (357)
|.+.+.++.+.+...-.+.++.+.+....+++++.-....+.+...+...+....-...-.+++....-.+....
T Consensus 43 i~~~l~~R~~~I~~~l~~Ae~~~~eA~~~~~e~e~~l~~a~~ea~~ii~~a~~~a~~~~~~~~~~A~~ea~~~~~----- 117 (173)
T PRK13453 43 LKDVMDKRERDINRDIDDAEQAKLNAQKLEEENKQKLKETQEEVQKILEDAKVQARQQQEQIIHEANVRANGMIE----- 117 (173)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----
Q ss_pred CCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHhCCCeeeCC-CCCCCCcccccee
Q 018372 254 DPSNDTAGAVPLLKSLLEGVEMTEKQLGEVFKKFGVEKFDP-INEPFDPHRHNAM 307 (357)
Q Consensus 254 d~s~d~a~~n~~lksl~eGVeMi~kqL~~vL~k~GVe~Iep-vGe~FDPnlHEAV 307 (357)
..-..+-.-..-....|.+-...+-+.-... +|...|+..|..+
T Consensus 118 ----------~A~~~I~~ek~~a~~~l~~ei~~lA~~~a~kll~~~l~~~~~~~l 162 (173)
T PRK13453 118 ----------TAQSEINSQKERAIADINNQVSELSVLIASKVLRKEISEQDQKAL 162 (173)
T ss_pred ----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHcCHHHHHHH
No 85
>PF06810 Phage_GP20: Phage minor structural protein GP20; InterPro: IPR009636 This family consists of several phage minor structural protein Gp20 sequences and prophage sequences of around 180 residues in length. The function of this family is unknown.; GO: 0005198 structural molecule activity
Probab=39.18 E-value=2.9e+02 Score=24.89 Aligned_cols=60 Identities=20% Similarity=0.250 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHH
Q 018372 171 RDDLVKLLKEREELLMAKNE---EMKQMQDKVLRSFAEMENVKDRTIREAENS-KKFAIQNFAK 230 (357)
Q Consensus 171 ~deL~klv~e~ee~L~e~~~---EleelkDk~lR~~AEfEN~RKR~~rE~e~a-kk~Aie~f~k 230 (357)
.+.+..++.+....|+.++. -+++|+.++..++++++......+.++.+. ..+|+...+.
T Consensus 29 ~~~~k~ql~~~d~~i~~Lk~~~~d~eeLk~~i~~lq~~~~~~~~~~e~~l~~~~~~~ai~~al~ 92 (155)
T PF06810_consen 29 RDNLKTQLKEADKQIKDLKKSAKDNEELKKQIEELQAKNKTAKEEYEAKLAQMKKDSAIKSALK 92 (155)
T ss_pred HHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555555544 345555566666666664444444444333 2444444443
No 86
>PRK14163 heat shock protein GrpE; Provisional
Probab=38.93 E-value=3.6e+02 Score=25.92 Aligned_cols=39 Identities=10% Similarity=0.013 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018372 190 EEMKQMQDKVLRSFAEMENVKDRTIREAENSKKFAIQNF 228 (357)
Q Consensus 190 ~EleelkDk~lR~~AEfEN~RKR~~rE~e~akk~Aie~f 228 (357)
...+++.+.-.|+..|.+++++.....+.....-.+.+|
T Consensus 65 R~~AEfeN~rkR~~kE~e~~~~~a~~~~~~~LLpVlDnL 103 (214)
T PRK14163 65 RLQAEYQNYRRRVERDRVTVKEIAVANLLSELLPVLDDV 103 (214)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhHH
Confidence 344566777778888888888877666544443333333
No 87
>PRK14155 heat shock protein GrpE; Provisional
Probab=38.64 E-value=3.1e+02 Score=26.09 Aligned_cols=30 Identities=13% Similarity=0.181 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018372 191 EMKQMQDKVLRSFAEMENVKDRTIREAENS 220 (357)
Q Consensus 191 EleelkDk~lR~~AEfEN~RKR~~rE~e~a 220 (357)
-.+++.+--.|+..|.+++++......-..
T Consensus 39 ~~AefeN~RKR~~kE~e~~~~~a~~~~~~~ 68 (208)
T PRK14155 39 YAAEAENTKRRAEREMNDARAYAIQKFARD 68 (208)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345666666777778888877766555433
No 88
>PRK14157 heat shock protein GrpE; Provisional
Probab=38.34 E-value=3.8e+02 Score=26.03 Aligned_cols=49 Identities=20% Similarity=0.155 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018372 173 DLVKLLKEREELLMAKNEEMKQMQDKVLRSFAEMENVKDRTIREAENSK 221 (357)
Q Consensus 173 eL~klv~e~ee~L~e~~~EleelkDk~lR~~AEfEN~RKR~~rE~e~ak 221 (357)
+|.++.+++.++...+....+++.+.-.|+..|.+.++++....+-...
T Consensus 85 ~l~~le~e~~e~kd~llR~~AEfeNyRKR~~rE~e~~~~~a~~~~~~dL 133 (227)
T PRK14157 85 PLGQAKKEAAEYLEALQRERAEFINYRNRTQKEQDRFRQHGIIDVLTAL 133 (227)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333444566777777888888888887766554433
No 89
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=37.51 E-value=3.4e+02 Score=29.15 Aligned_cols=47 Identities=15% Similarity=0.102 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018372 171 RDDLVKLLKEREELLMAKNEEMKQMQDKVLRSFAEMENVKDRTIREA 217 (357)
Q Consensus 171 ~deL~klv~e~ee~L~e~~~EleelkDk~lR~~AEfEN~RKR~~rE~ 217 (357)
.-.|+-.+.+++.++..+..+.+.|+.+..|+++.-.|+-.|++..+
T Consensus 61 lrTlva~~k~~r~~~~~l~~~N~~l~~eN~~L~~r~~~id~~i~~av 107 (472)
T TIGR03752 61 LRTLVAEVKELRKRLAKLISENEALKAENERLQKREQSIDQQIQQAV 107 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHH
Confidence 34455555666666666666777776666666665444444443333
No 90
>cd07622 BAR_SNX4 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 4. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. SNX4 is involved in recycling traffic from the sorting endosome (post-Golgi endosome) back to the late Golgi. It is also implicated in the regulation of plasma membrane receptor trafficking and interacts with receptors for EGF, insulin, platelet-derived growth factor and leptin. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and
Probab=37.49 E-value=3.5e+02 Score=25.31 Aligned_cols=66 Identities=21% Similarity=0.235 Sum_probs=29.8
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH
Q 018372 170 SRDDLVKLLKEREELLMAKNEEMKQMQDKVLRSFAEMENVKDRTIREAENSKKFAIQNFAKALLDV 235 (357)
Q Consensus 170 s~deL~klv~e~ee~L~e~~~EleelkDk~lR~~AEfEN~RKR~~rE~e~akk~Aie~f~kdLLpV 235 (357)
..+.|.++.++++..++..+...+...+..++-...|+..|.+--++.-...-.+.-.+...++.+
T Consensus 127 ~~~~L~~k~~~l~~~ve~a~~~~e~f~~~~~~E~~rF~~~K~~dlk~~l~~~A~~qi~~~~~~~~~ 192 (201)
T cd07622 127 AEDALANKKQQGEEAVKEAKDELNEFVKKALEDVERFKKQKVRDLKEILISYAKLQIKLAKKGLQT 192 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 335555555555555555555555554444444444444443333333333333333444444333
No 91
>PRK04325 hypothetical protein; Provisional
Probab=37.36 E-value=2.1e+02 Score=22.77 Aligned_cols=44 Identities=11% Similarity=0.156 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018372 172 DDLVKLLKEREELLMAKNEEMKQMQDKVLRSFAEMENVKDRTIR 215 (357)
Q Consensus 172 deL~klv~e~ee~L~e~~~EleelkDk~lR~~AEfEN~RKR~~r 215 (357)
+.+...+.++|..+.-++.-+++|.+-+.+.+.+++.+++.+..
T Consensus 5 ~~~e~Ri~~LE~klAfQE~tIe~LN~vv~~Qq~~I~~L~~ql~~ 48 (74)
T PRK04325 5 QEMEDRITELEIQLAFQEDLIDGLNATVARQQQTLDLLQAQLRL 48 (74)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555567777777777777777777777777666666555443
No 92
>PF07798 DUF1640: Protein of unknown function (DUF1640); InterPro: IPR024461 This family consists of uncharacterised proteins.
Probab=37.22 E-value=3e+02 Score=24.92 Aligned_cols=36 Identities=11% Similarity=0.159 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018372 190 EEMKQMQDKVLRSFAEMENVKDRTIREAENSKKFAI 225 (357)
Q Consensus 190 ~EleelkDk~lR~~AEfEN~RKR~~rE~e~akk~Ai 225 (357)
.+...++....++++|++.++.++..|+...+....
T Consensus 73 ~~~~~lr~~~e~L~~eie~l~~~L~~ei~~l~a~~k 108 (177)
T PF07798_consen 73 SEFAELRSENEKLQREIEKLRQELREEINKLRAEVK 108 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334556677778888888888888888777665433
No 93
>PRK02119 hypothetical protein; Provisional
Probab=37.04 E-value=2.1e+02 Score=22.72 Aligned_cols=47 Identities=9% Similarity=0.137 Sum_probs=33.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018372 172 DDLVKLLKEREELLMAKNEEMKQMQDKVLRSFAEMENVKDRTIREAE 218 (357)
Q Consensus 172 deL~klv~e~ee~L~e~~~EleelkDk~lR~~AEfEN~RKR~~rE~e 218 (357)
..+...+.++|..+.-.+.-+++|.+-+.+.+.+++.+++.+..=.+
T Consensus 5 ~~~e~Ri~~LE~rla~QE~tie~LN~~v~~Qq~~id~L~~ql~~L~~ 51 (73)
T PRK02119 5 QNLENRIAELEMKIAFQENLLEELNQALIEQQFVIDKMQVQLRYMAN 51 (73)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44566777778888777777888888888887777766665554433
No 94
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=37.03 E-value=1.4e+02 Score=25.33 Aligned_cols=27 Identities=19% Similarity=0.370 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018372 184 LLMAKNEEMKQMQDKVLRSFAEMENVK 210 (357)
Q Consensus 184 ~L~e~~~EleelkDk~lR~~AEfEN~R 210 (357)
++..+++++++++.+..++.++.+.++
T Consensus 35 q~~~~~~e~~~l~~~n~~L~~eI~~L~ 61 (105)
T PRK00888 35 QVAAQQQTNAKLKARNDQLFAEIDDLK 61 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 344444555555555555555555444
No 95
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].
Probab=36.76 E-value=4.7e+02 Score=26.53 Aligned_cols=77 Identities=19% Similarity=0.226 Sum_probs=55.1
Q ss_pred hccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhhhh
Q 018372 167 IELSRDDLVKLLKEREELLMAKNEEMKQMQDKVLRSFAEMENVKDRTIREAENSKKFAIQNFAKALLDVADNLGRASSVV 246 (357)
Q Consensus 167 ~~ls~deL~klv~e~ee~L~e~~~EleelkDk~lR~~AEfEN~RKR~~rE~e~akk~Aie~f~kdLLpVlDnLERAle~~ 246 (357)
.+|+.--| ..|.++|..++.++++-..-+=++--+.|-++.-|+..+.++.+.. ++..=.-.|++++|+|+++.+-+
T Consensus 10 eGL~~~aL-qKIqelE~QldkLkKE~qQrQfQleSlEAaLqKQKqK~e~ek~e~s--~LkREnq~l~e~c~~lek~rqKl 86 (307)
T PF10481_consen 10 EGLPTRAL-QKIQELEQQLDKLKKERQQRQFQLESLEAALQKQKQKVEEEKNEYS--ALKRENQSLMESCENLEKTRQKL 86 (307)
T ss_pred ccCCHHHH-HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhhh--hhhhhhhhHHHHHHHHHHHHHHh
Confidence 34454444 5567788888877777666665666777888888888777766554 45555678999999999997754
No 96
>PRK08475 F0F1 ATP synthase subunit B; Validated
Probab=36.58 E-value=3.2e+02 Score=24.60 Aligned_cols=70 Identities=13% Similarity=0.084 Sum_probs=0.0
Q ss_pred hhhccCHHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 018372 165 SEIELSRDDLVKLLKEREELLMAKNEEMKQM------------QDKVLRSFAEMENVKDRTIREAENSKKFAIQNFAKAL 232 (357)
Q Consensus 165 ~e~~ls~deL~klv~e~ee~L~e~~~Eleel------------kDk~lR~~AEfEN~RKR~~rE~e~akk~Aie~f~kdL 232 (357)
.++.-...+...+..+.++.|...+++..++ .+....+..+.++++.+...+++..+..++..+=..+
T Consensus 63 ~~Ae~~~~ea~~~~~e~e~~L~~Ar~eA~~Ii~~A~~eAe~~~~~ii~~A~~ea~~~~~~a~~~ie~Ek~~a~~elk~ei 142 (167)
T PRK08475 63 EEIQEKLKESKEKKEDALKKLEEAKEKAELIVETAKKEAYILTQKIEKQTKDDIENLIKSFEELMEFEVRKMEREVVEEV 142 (167)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred hH
Q 018372 233 LD 234 (357)
Q Consensus 233 Lp 234 (357)
+.
T Consensus 143 i~ 144 (167)
T PRK08475 143 LN 144 (167)
T ss_pred HH
No 97
>PRK14162 heat shock protein GrpE; Provisional
Probab=36.52 E-value=3.6e+02 Score=25.44 Aligned_cols=28 Identities=11% Similarity=0.027 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018372 190 EEMKQMQDKVLRSFAEMENVKDRTIREA 217 (357)
Q Consensus 190 ~EleelkDk~lR~~AEfEN~RKR~~rE~ 217 (357)
.-.+++.+.-.|...|.++.++......
T Consensus 64 R~~AEfeN~rkR~~kE~e~~~~~a~~~~ 91 (194)
T PRK14162 64 RSQAEIQNMQNRYAKERAQLIKYESQSL 91 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3345566666677777777777654444
No 98
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=36.43 E-value=2.5e+02 Score=24.50 Aligned_cols=48 Identities=15% Similarity=0.193 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018372 174 LVKLLKEREELLMAKNEEMKQMQDKVLRSFAEMENVKDRTIREAENSK 221 (357)
Q Consensus 174 L~klv~e~ee~L~e~~~EleelkDk~lR~~AEfEN~RKR~~rE~e~ak 221 (357)
+...+..++..++.++.++..++.+...+.+.+.........++++..
T Consensus 71 l~~~~~rL~~~~~~~ere~~~~~~~~~~l~~~~~~~~~~~k~~kee~~ 118 (151)
T PF11559_consen 71 LQNDVERLKEQLEELERELASAEEKERQLQKQLKSLEAKLKQEKEELQ 118 (151)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334455555555555566665555555566666555555555554443
No 99
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=36.33 E-value=3.7e+02 Score=30.26 Aligned_cols=26 Identities=19% Similarity=0.307 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018372 192 MKQMQDKVLRSFAEMENVKDRTIREA 217 (357)
Q Consensus 192 leelkDk~lR~~AEfEN~RKR~~rE~ 217 (357)
+++.++.+.+.+++.+..+++++++.
T Consensus 527 ~e~~~~~~~~~~~e~~~~~~~l~~~~ 552 (771)
T TIGR01069 527 LEQKNEHLEKLLKEQEKLKKELEQEM 552 (771)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444444444444443
No 100
>KOG4196 consensus bZIP transcription factor MafK [Transcription]
Probab=36.27 E-value=1.5e+02 Score=26.71 Aligned_cols=26 Identities=12% Similarity=0.273 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018372 188 KNEEMKQMQDKVLRSFAEMENVKDRT 213 (357)
Q Consensus 188 ~~~EleelkDk~lR~~AEfEN~RKR~ 213 (357)
+..|++.|+..+.|+.-|.++|+-+.
T Consensus 86 L~qqv~~L~~e~s~~~~E~da~k~k~ 111 (135)
T KOG4196|consen 86 LQQQVEKLKEENSRLRRELDAYKSKY 111 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444445555555555555554443
No 101
>PRK14473 F0F1 ATP synthase subunit B; Provisional
Probab=35.89 E-value=3.1e+02 Score=24.23 Aligned_cols=119 Identities=12% Similarity=0.139 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhhhhhhhcccC
Q 018372 174 LVKLLKEREELLMAKNEEMKQMQDKVLRSFAEMENVKDRTIREAENSKKFAIQNFAKALLDVADNLGRASSVVKENFLKI 253 (357)
Q Consensus 174 L~klv~e~ee~L~e~~~EleelkDk~lR~~AEfEN~RKR~~rE~e~akk~Aie~f~kdLLpVlDnLERAle~~~e~~~k~ 253 (357)
|.+.+.+++..+...-.+.++.+.+....+++++..-.-...+...+...|....-...=.+++....-.+....
T Consensus 33 i~~~l~~R~~~I~~~l~~Ae~~~~ea~~~~~e~e~~l~~A~~ea~~ii~~A~~~a~~~~~~~l~~A~~ea~~~~~----- 107 (164)
T PRK14473 33 VLNLLNERTRRIEESLRDAEKVREQLANAKRDYEAELAKARQEAAKIVAQAQERARAQEAEIIAQARREAEKIKE----- 107 (164)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----
Q ss_pred CCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHhCCCeeeCC-CCCCCCcccccee
Q 018372 254 DPSNDTAGAVPLLKSLLEGVEMTEKQLGEVFKKFGVEKFDP-INEPFDPHRHNAM 307 (357)
Q Consensus 254 d~s~d~a~~n~~lksl~eGVeMi~kqL~~vL~k~GVe~Iep-vGe~FDPnlHEAV 307 (357)
.....+..--.-...+|.+-...+-+.--.- +|...|+..|..+
T Consensus 108 ----------~a~~~I~~ek~~a~~~L~~~i~~la~~~a~kil~~~l~~~~~~~l 152 (164)
T PRK14473 108 ----------EARAQAEQERQRMLSELKSQIADLVTLTASRVLGAELQARGHDAL 152 (164)
T ss_pred ----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHcCHHHHHHH
No 102
>PRK11637 AmiB activator; Provisional
Probab=35.67 E-value=2.4e+02 Score=28.82 Aligned_cols=42 Identities=7% Similarity=0.193 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018372 176 KLLKEREELLMAKNEEMKQMQDKVLRSFAEMENVKDRTIREA 217 (357)
Q Consensus 176 klv~e~ee~L~e~~~EleelkDk~lR~~AEfEN~RKR~~rE~ 217 (357)
+.+......|..++.++..++.++..+.+++...++++....
T Consensus 82 ~qi~~~~~~i~~~~~~i~~~~~ei~~l~~eI~~~q~~l~~~~ 123 (428)
T PRK11637 82 EAISQASRKLRETQNTLNQLNKQIDELNASIAKLEQQQAAQE 123 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333444444444444444444444444444444444333
No 103
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=35.16 E-value=4.2e+02 Score=25.57 Aligned_cols=67 Identities=12% Similarity=0.131 Sum_probs=40.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhhh
Q 018372 178 LKEREELLMAKNEEMKQMQDKVLRSFAE---MENVKDRTIREAENSKKFAIQNFAKALLDVADNLGRASSV 245 (357)
Q Consensus 178 v~e~ee~L~e~~~EleelkDk~lR~~AE---fEN~RKR~~rE~e~akk~Aie~f~kdLLpVlDnLERAle~ 245 (357)
+.+...+...|..|-...-+.+.-..+| +|+.-+.++.|+.+....+ ..+-.++.++.|.+++.+..
T Consensus 34 L~e~~kE~~~L~~Er~~h~eeLrqI~~DIn~lE~iIkqa~~er~~~~~~i-~r~~eey~~Lk~~in~~R~e 103 (230)
T PF10146_consen 34 LEEYRKEMEELLQERMAHVEELRQINQDINTLENIIKQAESERNKRQEKI-QRLYEEYKPLKDEINELRKE 103 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333444334444 5778888888888866554 66667888888888877664
No 104
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=35.02 E-value=4.7e+02 Score=29.17 Aligned_cols=38 Identities=13% Similarity=0.230 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018372 176 KLLKEREELLMAKNEEMKQMQDKVLRSFAEMENVKDRT 213 (357)
Q Consensus 176 klv~e~ee~L~e~~~EleelkDk~lR~~AEfEN~RKR~ 213 (357)
+.++.++++...++.++++++...-.+.++++-++++.
T Consensus 429 ~~ve~l~~e~~~L~~~~ee~k~eie~L~~~l~~~~r~~ 466 (652)
T COG2433 429 ETVERLEEENSELKRELEELKREIEKLESELERFRREV 466 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444444444444444443
No 105
>PRK13455 F0F1 ATP synthase subunit B; Provisional
Probab=34.85 E-value=3.5e+02 Score=24.49 Aligned_cols=119 Identities=13% Similarity=0.112 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhhhhhhhcccC
Q 018372 174 LVKLLKEREELLMAKNEEMKQMQDKVLRSFAEMENVKDRTIREAENSKKFAIQNFAKALLDVADNLGRASSVVKENFLKI 253 (357)
Q Consensus 174 L~klv~e~ee~L~e~~~EleelkDk~lR~~AEfEN~RKR~~rE~e~akk~Aie~f~kdLLpVlDnLERAle~~~e~~~k~ 253 (357)
+.+.+.++.+.+...-.+.++.+.+....+++++.-....+.+..++...|....-...-.+++....-......
T Consensus 52 v~~~L~~R~~~I~~~l~~Ae~~~~eA~~~l~e~e~~L~~A~~ea~~Ii~~A~~~a~~~~e~~~~~a~~ea~~~~~----- 126 (184)
T PRK13455 52 IGGMLDKRAEGIRSELEEARALREEAQTLLASYERKQREVQEQADRIVAAAKDEAQAAAEQAKADLEASIARRLA----- 126 (184)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----
Q ss_pred CCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHhCCCeeeCC-CCCCCCcccccee
Q 018372 254 DPSNDTAGAVPLLKSLLEGVEMTEKQLGEVFKKFGVEKFDP-INEPFDPHRHNAM 307 (357)
Q Consensus 254 d~s~d~a~~n~~lksl~eGVeMi~kqL~~vL~k~GVe~Iep-vGe~FDPnlHEAV 307 (357)
..-..+..--.-..+++......+-+....- +|...|+..|..+
T Consensus 127 ----------~A~~~I~~ek~~a~~~l~~~i~~lA~~~a~kil~~~l~~~~~~~l 171 (184)
T PRK13455 127 ----------AAEDQIASAEAAAVKAVRDRAVSVAVAAAADVIAKQMTAADANAL 171 (184)
T ss_pred ----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHH
No 106
>PF06409 NPIP: Nuclear pore complex interacting protein (NPIP); InterPro: IPR009443 This family consists of a series of primate specific nuclear pore complex interacting protein (NPIP) sequences. The function of this family is unknown but is well conserved from African apes to humans [].
Probab=34.85 E-value=1.1e+02 Score=30.16 Aligned_cols=43 Identities=16% Similarity=0.138 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018372 178 LKEREELLMAKNEEMKQMQDKVLRSFAEMENVKDRTIREAENS 220 (357)
Q Consensus 178 v~e~ee~L~e~~~EleelkDk~lR~~AEfEN~RKR~~rE~e~a 220 (357)
+..+|-+-.+++.++.+..+....+..|..+|++|.++-.+..
T Consensus 129 l~~ke~E~~EKErqlSeAeEn~kl~mkei~tY~~~fQ~~Qel~ 171 (265)
T PF06409_consen 129 LSMKECEHAEKERQLSEAEENGKLAMKEIHTYKQMFQRMQELQ 171 (265)
T ss_pred HHHHHHHHHHHHhhhhhhhhccchHHHHHHHHHHHHHHHHHHH
Confidence 3444555566677788888888999999999999987765443
No 107
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=34.25 E-value=1.6e+02 Score=22.34 Aligned_cols=24 Identities=13% Similarity=0.223 Sum_probs=9.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 018372 186 MAKNEEMKQMQDKVLRSFAEMENV 209 (357)
Q Consensus 186 ~e~~~EleelkDk~lR~~AEfEN~ 209 (357)
..+++++++++.+...+.++.+++
T Consensus 27 ~~l~~~i~~l~~e~~~L~~ei~~l 50 (80)
T PF04977_consen 27 AELQKEIEELKKENEELKEEIERL 50 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 333344444444443443443333
No 108
>PF08336 P4Ha_N: Prolyl 4-Hydroxylase alpha-subunit, N-terminal region; InterPro: IPR013547 The members found in this entry are eukaryotic proteins, and include all three isoforms of the prolyl 4-hydroxylase alpha subunit. This enzyme (1.14.11.2 from EC) is important in the post-translational modification of collagen, as it catalyses the formation of 4-hydroxyproline. In vertebrates, the complete enzyme is an alpha2-beta2 tetramer; the beta-subunit is identical to protein disulphide isomerase [, , , ]. The function of the N-terminal region featured in this family does not seem to be known. ; GO: 0004656 procollagen-proline 4-dioxygenase activity, 0016702 oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen, 0055114 oxidation-reduction process, 0005783 endoplasmic reticulum
Probab=33.68 E-value=3.1e+02 Score=23.55 Aligned_cols=67 Identities=15% Similarity=0.142 Sum_probs=42.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Q 018372 172 DDLVKLLKEREELLMAKNEEMKQMQDKVLRSFAEMENV----------KDRTIREAENSKKFAIQNFAKALLDVADN 238 (357)
Q Consensus 172 deL~klv~e~ee~L~e~~~EleelkDk~lR~~AEfEN~----------RKR~~rE~e~akk~Aie~f~kdLLpVlDn 238 (357)
..|...+.++++.+..++.-+++++.....+..+.+.| -||+..+-.....+..+....+++.-+..
T Consensus 18 ~~L~~Yi~~~~~kl~~l~~~~~~~~~~~~~~~~d~e~yl~nPlnaF~LIrRl~~dW~~~~~~~~~~~~~~~~~~~~~ 94 (134)
T PF08336_consen 18 SNLRNYIEELQEKLDTLKRFLDEMKREHEKAKSDPEEYLSNPLNAFSLIRRLHQDWPKWEKLMEQPVGQEQLQNLQE 94 (134)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhhhhcHHHHHHHHHHHHHhhhhHHHHHHHhhhHHHHHHHHH
Confidence 44456666666666666666666666666655554443 57888887777777777766665444433
No 109
>PF04740 LXG: LXG domain of WXG superfamily; InterPro: IPR006829 This group of putative transposases is found in Gram-positive bacteria, mostly Bacillus members and is thought to be a Cytosolic protein. However, we have also found a Bacillus subtilis bacteriophage SPbetac2 homologue (O64023 from SWISSPROT), possibly arising as a result of horizontal transfer. More information about these proteins can be found at Protein of the Month: Transposase [].
Probab=32.82 E-value=3.7e+02 Score=24.20 Aligned_cols=80 Identities=13% Similarity=0.162 Sum_probs=46.4
Q ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhhhhhh
Q 018372 169 LSRDDLVKLLKEREELLMAKNEEMKQMQDKVLRSFAEMENVKDRTIREAENSKKFAIQNFAKALLDVADNLGRASSVVKE 248 (357)
Q Consensus 169 ls~deL~klv~e~ee~L~e~~~EleelkDk~lR~~AEfEN~RKR~~rE~e~akk~Aie~f~kdLLpVlDnLERAle~~~e 248 (357)
+...+|..........++....++..++..+....-.-..++=..-.-..........+++.-++.+++.+..++..++.
T Consensus 3 ~d~~el~~~~~~~~~~~~~~~~~l~~l~~ai~~~~~~~~~LkGka~dsiK~y~~~vh~pll~~~~~~~~~~~~~l~~~~~ 82 (204)
T PF04740_consen 3 LDVSELHSQAESTNSSLKELKEQLESLQKAINQFISSESSLKGKAYDSIKNYFSEVHIPLLQGLILLLEEYQEALKFIKD 82 (204)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 44566666666656556666666666555444332222225555555555555555667777777777777777754443
No 110
>PRK14158 heat shock protein GrpE; Provisional
Probab=32.36 E-value=4.4e+02 Score=24.90 Aligned_cols=30 Identities=13% Similarity=-0.012 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018372 191 EMKQMQDKVLRSFAEMENVKDRTIREAENS 220 (357)
Q Consensus 191 EleelkDk~lR~~AEfEN~RKR~~rE~e~a 220 (357)
..+++.+.-.|...|.+++++......-..
T Consensus 66 ~~AefeN~RkR~~kE~e~~~~~a~~~~~~~ 95 (194)
T PRK14158 66 ERADLENYRKRVQKEKEELLKYGNESLILE 95 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345666666777777777777665554433
No 111
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=32.11 E-value=2.4e+02 Score=21.91 Aligned_cols=47 Identities=13% Similarity=0.184 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018372 175 VKLLKEREELLMAKNEEMKQMQDKVLRSFAEMENVKDRTIREAENSK 221 (357)
Q Consensus 175 ~klv~e~ee~L~e~~~EleelkDk~lR~~AEfEN~RKR~~rE~e~ak 221 (357)
...+.++|..+.-++.-+++|.+-+.+.+.+++-+++.+..=.++++
T Consensus 3 e~Ri~~LE~~la~qe~~ie~Ln~~v~~Qq~~I~~L~~~l~~L~~rl~ 49 (69)
T PF04102_consen 3 EERIEELEIKLAFQEDTIEELNDVVTEQQRQIDRLQRQLRLLRERLR 49 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34456666666666666777777777766666666666554444333
No 112
>PRK09039 hypothetical protein; Validated
Probab=32.09 E-value=3.9e+02 Score=27.01 Aligned_cols=25 Identities=8% Similarity=0.150 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 018372 186 MAKNEEMKQMQDKVLRSFAEMENVK 210 (357)
Q Consensus 186 ~e~~~EleelkDk~lR~~AEfEN~R 210 (357)
..++.|++.|+.++.++.+.++-..
T Consensus 140 ~~L~~qI~aLr~Qla~le~~L~~ae 164 (343)
T PRK09039 140 ELLNQQIAALRRQLAALEAALDASE 164 (343)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444333
No 113
>PF01025 GrpE: GrpE; InterPro: IPR000740 Molecular chaperones are a diverse family of proteins that function to protect proteins in the intracellular milieu from irreversible aggregation during synthesis and in times of cellular stress. The bacterial molecular chaperone DnaK is an enzyme that couples cycles of ATP binding, hydrolysis, and ADP release by an N-terminal ATP-hydrolysing domain to cycles of sequestration and release of unfolded proteins by a C-terminal substrate binding domain. In prokaryotes the grpE protein. Dimeric GrpE is the co-chaperone for DnaK, and acts as a nucleotide exchange factor, stimulating the rate of ADP release 5000-fold []. DnaK is itself a weak ATPase; ATP hydrolysis by DnaK is stimulated by its interaction with another co-chaperone, DnaJ. Thus the co-chaperones DnaJ and GrpE are capable of tightly regulating the nucleotide-bound and substrate-bound state of DnaK in ways that are necessary for the normal housekeeping functions and stress-related functions of the DnaK molecular chaperone cycle. The X-ray crystal structure of GrpE in complex with the ATPase domain of DnaK revealed that GrpE is an asymmetric homodimer, bent in a manner that favours extensive contacts with only one DnaKATPase monomer []. GrpE does not actively compete for the atomic positions occupied by the nucleotide. GrpE and ADP mutually reduce one another's affinity for DnaK 200-fold, and ATP instantly dissociates GrpE from DnaK.; GO: 0000774 adenyl-nucleotide exchange factor activity, 0042803 protein homodimerization activity, 0051087 chaperone binding, 0006457 protein folding; PDB: 3A6M_A 4ANI_A 1DKG_B.
Probab=31.90 E-value=3.2e+02 Score=23.92 Aligned_cols=44 Identities=20% Similarity=0.226 Sum_probs=22.1
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018372 170 SRDDLVKLLKEREELLMAKNEEMKQMQDKVLRSFAEMENVKDRTIRE 216 (357)
Q Consensus 170 s~deL~klv~e~ee~L~e~~~EleelkDk~lR~~AEfEN~RKR~~rE 216 (357)
..+++.+.+.++.+.+..+ .+++.+...|+..+.+++++...+.
T Consensus 19 ~l~~l~~~~~~l~~~~~r~---~ae~en~~~r~~~e~~~~~~~~~~~ 62 (165)
T PF01025_consen 19 ELEELEKEIEELKERLLRL---QAEFENYRKRLEKEKEEAKKYALEK 62 (165)
T ss_dssp CHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHCCHHH
T ss_pred HHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344445555555444444 3444455555566666666544333
No 114
>PF06698 DUF1192: Protein of unknown function (DUF1192); InterPro: IPR009579 This family consists of several short, hypothetical, bacterial proteins of around 60 residues in length. The function of this family is unknown.
Probab=31.85 E-value=1.9e+02 Score=22.53 Aligned_cols=28 Identities=14% Similarity=0.049 Sum_probs=19.3
Q ss_pred hhccCHHHHHHHHHHHHHHHHHHHHHHH
Q 018372 166 EIELSRDDLVKLLKEREELLMAKNEEMK 193 (357)
Q Consensus 166 e~~ls~deL~klv~e~ee~L~e~~~Ele 193 (357)
=..+|.+||...++.++.++..++.++.
T Consensus 18 Ls~lSv~EL~~RIa~L~aEI~R~~~~~~ 45 (59)
T PF06698_consen 18 LSLLSVEELEERIALLEAEIARLEAAIA 45 (59)
T ss_pred chhcCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3678889988887777766665554443
No 115
>PRK13410 molecular chaperone DnaK; Provisional
Probab=31.77 E-value=3.8e+02 Score=29.54 Aligned_cols=16 Identities=25% Similarity=0.507 Sum_probs=11.0
Q ss_pred hccCHHHHHHHHHHHH
Q 018372 167 IELSRDDLVKLLKERE 182 (357)
Q Consensus 167 ~~ls~deL~klv~e~e 182 (357)
..++.+++.+.+++.+
T Consensus 500 ~~ls~~ei~~~~~~~~ 515 (668)
T PRK13410 500 STLSEQEVNRMIQEAE 515 (668)
T ss_pred ccCCHHHHHHHHHHHH
Confidence 5688888877766544
No 116
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=31.18 E-value=7.5e+02 Score=29.00 Aligned_cols=80 Identities=20% Similarity=0.353 Sum_probs=49.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhhhhhhhcccCCCCCCCCCch
Q 018372 184 LLMAKNEEMKQMQDKVLRSFAEMENVKDRTIREAENSKKFAIQNFAKALLDVADNLGRASSVVKENFLKIDPSNDTAGAV 263 (357)
Q Consensus 184 ~L~e~~~EleelkDk~lR~~AEfEN~RKR~~rE~e~akk~Aie~f~kdLLpVlDnLERAle~~~e~~~k~d~s~d~a~~n 263 (357)
.+..++.+++.+..=-+++..+|+.+.+|...=..+... +..-...|+.++..|+.-.
T Consensus 950 ~i~~le~~i~~lg~VN~~Aiee~e~~~~r~~~l~~~~~d--l~~a~~~l~~~i~~~d~~~-------------------- 1007 (1163)
T COG1196 950 EIERLEEEIEALGPVNLRAIEEYEEVEERYEELKSQRED--LEEAKEKLLEVIEELDKEK-------------------- 1007 (1163)
T ss_pred HHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHH--------------------
Confidence 344444444444444467888888888887655444332 2334445555555554322
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhC
Q 018372 264 PLLKSLLEGVEMTEKQLGEVFKKF 287 (357)
Q Consensus 264 ~~lksl~eGVeMi~kqL~~vL~k~ 287 (357)
...|.++|.-|-..|..+|..+
T Consensus 1008 --~~~f~~~f~~In~~F~~if~~L 1029 (1163)
T COG1196 1008 --RERFKETFDKINENFSEIFKEL 1029 (1163)
T ss_pred --HHHHHHHHHHHHHHHHHHHHHh
Confidence 2468888999999999999887
No 117
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=31.10 E-value=3.4e+02 Score=23.62 Aligned_cols=14 Identities=29% Similarity=0.494 Sum_probs=5.7
Q ss_pred HHHHHHHHHHHHHH
Q 018372 194 QMQDKVLRSFAEME 207 (357)
Q Consensus 194 elkDk~lR~~AEfE 207 (357)
.+.+.+.++.+|.+
T Consensus 56 ~l~~~~~~l~~d~~ 69 (151)
T PF11559_consen 56 DLSDKLRRLRSDIE 69 (151)
T ss_pred HHHHHHHHHHhHHH
Confidence 33344444444433
No 118
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=31.09 E-value=4.2e+02 Score=24.35 Aligned_cols=37 Identities=14% Similarity=0.270 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018372 176 KLLKEREELLMAKNEEMKQMQDKVLRSFAEMENVKDR 212 (357)
Q Consensus 176 klv~e~ee~L~e~~~EleelkDk~lR~~AEfEN~RKR 212 (357)
..+..++..+.....++..|+..+..+...+..++.+
T Consensus 98 ~~~~~l~~~~~~~~~~~~~l~~~l~~l~~kl~e~k~k 134 (221)
T PF04012_consen 98 EQAERLEQQLDQAEAQVEKLKEQLEELEAKLEELKSK 134 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444455555555555555555555555555443
No 119
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=31.09 E-value=1.9e+02 Score=21.85 Aligned_cols=25 Identities=12% Similarity=0.268 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 018372 178 LKEREELLMAKNEEMKQMQDKVLRS 202 (357)
Q Consensus 178 v~e~ee~L~e~~~EleelkDk~lR~ 202 (357)
+++++..++.++++.++|+.++.++
T Consensus 26 i~~l~~~i~~l~~e~~~L~~ei~~l 50 (80)
T PF04977_consen 26 IAELQKEIEELKKENEELKEEIERL 50 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3333344444444444444444333
No 120
>PRK14160 heat shock protein GrpE; Provisional
Probab=31.00 E-value=4.8e+02 Score=24.99 Aligned_cols=44 Identities=14% Similarity=0.145 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHH
Q 018372 186 MAKNEEMKQMQDKVLRSFA---EMENVKDRTIREAENSKKFAIQNFA 229 (357)
Q Consensus 186 ~e~~~EleelkDk~lR~~A---EfEN~RKR~~rE~e~akk~Aie~f~ 229 (357)
..+++++..++.++..+.+ ++.+-..|+..+.+++++......-
T Consensus 57 ~~l~~e~~~l~~~l~~l~~e~~elkd~~lR~~AefeN~RKR~~kE~e 103 (211)
T PRK14160 57 EELKDENNKLKEENKKLENELEALKDRLLRTVAEYDNYRKRTAKEKE 103 (211)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444 4444556666677777766554443
No 121
>PRK00846 hypothetical protein; Provisional
Probab=30.48 E-value=3e+02 Score=22.46 Aligned_cols=50 Identities=12% Similarity=0.050 Sum_probs=36.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018372 172 DDLVKLLKEREELLMAKNEEMKQMQDKVLRSFAEMENVKDRTIREAENSK 221 (357)
Q Consensus 172 deL~klv~e~ee~L~e~~~EleelkDk~lR~~AEfEN~RKR~~rE~e~ak 221 (357)
+++...+.++|..+.-.+.-+++|.+-+.+.+..++.+++.+..=.++.+
T Consensus 9 ~~le~Ri~~LE~rlAfQe~tIe~LN~~v~~qq~~I~~L~~ql~~L~~rL~ 58 (77)
T PRK00846 9 QALEARLVELETRLSFQEQALTELSEALADARLTGARNAELIRHLLEDLG 58 (77)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566777778777777777888888888888888777777665554444
No 122
>PRK14140 heat shock protein GrpE; Provisional
Probab=30.25 E-value=4.7e+02 Score=24.63 Aligned_cols=30 Identities=10% Similarity=0.021 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018372 191 EMKQMQDKVLRSFAEMENVKDRTIREAENS 220 (357)
Q Consensus 191 EleelkDk~lR~~AEfEN~RKR~~rE~e~a 220 (357)
..+++.+.-.|+..|.++.++......-..
T Consensus 63 ~~Ae~eN~rkR~~rE~~~~~~~a~~~~~~~ 92 (191)
T PRK14140 63 LQADFENYKRRIQKENEAAEKYRAQSLASD 92 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345666666777778877777665554433
No 123
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=29.83 E-value=5.8e+02 Score=25.52 Aligned_cols=81 Identities=16% Similarity=0.159 Sum_probs=41.4
Q ss_pred ccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHhhHHHHH
Q 018372 168 ELSRDDLVKLLKEREELLMAKNEEMKQMQDKVLRSFAEMENVKDRTIREAENS---------KKFAIQNFAKALLDVADN 238 (357)
Q Consensus 168 ~ls~deL~klv~e~ee~L~e~~~EleelkDk~lR~~AEfEN~RKR~~rE~e~a---------kk~Aie~f~kdLLpVlDn 238 (357)
...++++...+..++..|++..++.+++-..+..-.++.+.-+.-...+...+ .+...+.=+....|.++.
T Consensus 14 ~~~V~~m~~~L~~~~~~L~~k~~e~e~ll~~i~~~~~~a~~~~~~~~~ee~~~~~~~~ei~~~~~~a~~~L~~a~P~L~~ 93 (344)
T PF12777_consen 14 EEQVEEMQEELEEKQPELEEKQKEAEELLEEIEKEQEEAEKKKAIVEEEEEEAEKQAKEIEEIKEEAEEELAEAEPALEE 93 (344)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33456666666666666666666666665555433333333332222221111 112234445677888887
Q ss_pred HHHhhhhhhh
Q 018372 239 LGRASSVVKE 248 (357)
Q Consensus 239 LERAle~~~e 248 (357)
-..|+..++.
T Consensus 94 A~~al~~l~k 103 (344)
T PF12777_consen 94 AQEALKSLDK 103 (344)
T ss_dssp HHHHHHCS-H
T ss_pred HHHHHHhCCH
Confidence 7777776543
No 124
>PF13870 DUF4201: Domain of unknown function (DUF4201)
Probab=29.36 E-value=4.2e+02 Score=23.75 Aligned_cols=10 Identities=30% Similarity=0.491 Sum_probs=3.6
Q ss_pred HHHHHHHHHH
Q 018372 176 KLLKEREELL 185 (357)
Q Consensus 176 klv~e~ee~L 185 (357)
+.++++..+|
T Consensus 56 ~kIeERn~eL 65 (177)
T PF13870_consen 56 EKIEERNKEL 65 (177)
T ss_pred HHHHHHHHHH
Confidence 3333333333
No 125
>PRK14145 heat shock protein GrpE; Provisional
Probab=29.05 E-value=5e+02 Score=24.59 Aligned_cols=32 Identities=6% Similarity=-0.084 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018372 191 EMKQMQDKVLRSFAEMENVKDRTIREAENSKK 222 (357)
Q Consensus 191 EleelkDk~lR~~AEfEN~RKR~~rE~e~akk 222 (357)
-.+++.+.-.|+..|.++++++.........-
T Consensus 71 ~~AEfeN~rkR~~kE~e~~~~~a~e~~~~~LL 102 (196)
T PRK14145 71 LKAEFENYRKRTEKEKSEMVEYGKEQVILELL 102 (196)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34666777778888888887776665544433
No 126
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=29.00 E-value=4e+02 Score=26.54 Aligned_cols=50 Identities=18% Similarity=0.250 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018372 173 DLVKLLKEREELLMAKNEEMKQMQDKVLRSFAEMENVKDRTIREAENSKK 222 (357)
Q Consensus 173 eL~klv~e~ee~L~e~~~EleelkDk~lR~~AEfEN~RKR~~rE~e~akk 222 (357)
.|...+.++-..+..+++++.+++..+..+..+++-.+.|+....+-..+
T Consensus 56 ~L~~qi~~~~~k~~~~~~~i~~~~~eik~l~~eI~~~~~~I~~r~~~l~~ 105 (265)
T COG3883 56 SLDNQIEEIQSKIDELQKEIDQSKAEIKKLQKEIAELKENIVERQELLKK 105 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444455555556666666666666666555555444444433
No 127
>PRK14164 heat shock protein GrpE; Provisional
Probab=28.98 E-value=5.2e+02 Score=24.92 Aligned_cols=48 Identities=15% Similarity=0.064 Sum_probs=27.3
Q ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018372 169 LSRDDLVKLLKEREELLMAKNEEMKQMQDKVLRSFAEMENVKDRTIREAEN 219 (357)
Q Consensus 169 ls~deL~klv~e~ee~L~e~~~EleelkDk~lR~~AEfEN~RKR~~rE~e~ 219 (357)
....+|.+.++++.+.+. .-.+++.+.-.|+..|.++.++......-.
T Consensus 77 ~~~~~le~el~el~d~ll---R~~AE~eN~RkR~~rE~e~~~~~a~~~~~~ 124 (218)
T PRK14164 77 GEASTVEAQLAERTEDLQ---RVTAEYANYRRRTERERQAIIETAKAGVAT 124 (218)
T ss_pred hhHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555555444 444555666666666777777666555433
No 128
>PLN02890 geranyl diphosphate synthase
Probab=28.66 E-value=32 Score=35.87 Aligned_cols=67 Identities=19% Similarity=0.231 Sum_probs=41.5
Q ss_pred ChhHHHHHHHHhhh--hhhhhccccCCCCcCCcccccccccccccCCCccccccccccccccccccccc
Q 018372 1 MMASRVLSRATRCV--GRRALLLVPTSGKQHSPALSNQFHSLVFESPNKVSLFHQTTLNSSIFQRFGFS 67 (357)
Q Consensus 1 ~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 67 (357)
|+++|-++|.++.. +|+.+.+...-.+.+.+.+++.-|+.+..++..+..+..-...+..+++|+..
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 69 (422)
T PLN02890 1 MLLSRRVARISATSGGGRGAYGCSQSLASSRAALLGRHGHPLSQSTSKVVGCRGTYSVSSRWLHGFQYQ 69 (422)
T ss_pred CCcchHHHHHhccccccccchhhhhhhcccccccCCCCcccccCCCccccccccceeechhhhhhhhhh
Confidence 78889888888765 23333332223444555667777888844444445555555666677787776
No 129
>PRK00295 hypothetical protein; Provisional
Probab=28.17 E-value=2.9e+02 Score=21.60 Aligned_cols=40 Identities=10% Similarity=0.137 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018372 177 LLKEREELLMAKNEEMKQMQDKVLRSFAEMENVKDRTIRE 216 (357)
Q Consensus 177 lv~e~ee~L~e~~~EleelkDk~lR~~AEfEN~RKR~~rE 216 (357)
.+.++|..+.-.+.-+++|.+-+.+.+.+++.+++.+..=
T Consensus 6 Ri~~LE~kla~qE~tie~Ln~~v~~Qq~~I~~L~~ql~~L 45 (68)
T PRK00295 6 RVTELESRQAFQDDTIQALNDVLVEQQRVIERLQLQMAAL 45 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3556666666666666777777777766666665554433
No 130
>PRK14474 F0F1 ATP synthase subunit B; Provisional
Probab=28.10 E-value=5.5e+02 Score=24.74 Aligned_cols=38 Identities=8% Similarity=0.098 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Q 018372 199 VLRSFAEMENVKDRTIREAENSKKFAIQNFAKALLDVA 236 (357)
Q Consensus 199 ~lR~~AEfEN~RKR~~rE~e~akk~Aie~f~kdLLpVl 236 (357)
+..++++.+.++.+..++++..+..+...+-..+....
T Consensus 92 l~~A~~ea~~~~~~a~~~ie~Ek~~a~~~L~~~v~~la 129 (250)
T PRK14474 92 LNEAREDVATARDEWLEQLEREKQEFFKALQQQTGQQM 129 (250)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556666666666666666666666666666665544
No 131
>KOG4348 consensus Adaptor protein CMS/SETA [Signal transduction mechanisms]
Probab=27.90 E-value=2.7e+02 Score=30.00 Aligned_cols=56 Identities=20% Similarity=0.166 Sum_probs=36.7
Q ss_pred ccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018372 168 ELSRDDLVKLLKEREELLMAKNEEMKQMQDKVLRSFAEMENVKDRTIREAENSKKF 223 (357)
Q Consensus 168 ~ls~deL~klv~e~ee~L~e~~~EleelkDk~lR~~AEfEN~RKR~~rE~e~akk~ 223 (357)
.-+.+||..++-++...++.++++...--++++.-+-|-..+|-|++-|++.+++.
T Consensus 568 k~s~delr~qi~el~~ive~lk~~~~kel~kl~~dleeek~mr~~lemei~~lkka 623 (627)
T KOG4348|consen 568 KNSLDELRAQIIELLCIVEALKKDHGKELEKLRKDLEEEKTMRSNLEMEIEKLKKA 623 (627)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhhHHHHHHH
Confidence 34567777777777666666665554444455555555567888888888887764
No 132
>smart00338 BRLZ basic region leucin zipper.
Probab=27.73 E-value=2.5e+02 Score=21.16 Aligned_cols=35 Identities=20% Similarity=0.272 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018372 177 LLKEREELLMAKNEEMKQMQDKVLRSFAEMENVKD 211 (357)
Q Consensus 177 lv~e~ee~L~e~~~EleelkDk~lR~~AEfEN~RK 211 (357)
.+.+++..+..++.+..+|..++..+..+...++.
T Consensus 27 ~~~~Le~~~~~L~~en~~L~~~~~~l~~e~~~lk~ 61 (65)
T smart00338 27 EIEELERKVEQLEAENERLKKEIERLRRELEKLKS 61 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555555666666666666666555555543
No 133
>PF07795 DUF1635: Protein of unknown function (DUF1635); InterPro: IPR012862 The members of this family include sequences that are parts of hypothetical proteins expressed by plant species. The region in question is about 170 amino acids long.
Probab=27.72 E-value=2.4e+02 Score=27.28 Aligned_cols=46 Identities=15% Similarity=0.275 Sum_probs=35.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018372 172 DDLVKLLKEREELLMAKNEEMKQMQDKVLRSFAEMENVKDRTIREA 217 (357)
Q Consensus 172 deL~klv~e~ee~L~e~~~EleelkDk~lR~~AEfEN~RKR~~rE~ 217 (357)
-||......-.+++...+.++..|.+-+..+..|-+..|...++=.
T Consensus 15 lELE~~k~~A~EElRk~eeqi~~L~~Ll~~a~~ERDEAr~qlq~Ll 60 (214)
T PF07795_consen 15 LELEATKMEANEELRKREEQIAHLKDLLKKAYQERDEAREQLQKLL 60 (214)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3565555555667788888888999999999999888888887766
No 134
>cd00632 Prefoldin_beta Prefoldin beta; Prefoldin is a hexameric molecular chaperone complex, composed of two evolutionarily related subunits (alpha and beta), which are found in both eukaryotes and archaea. Prefoldin binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The hexameric structure consists of a double beta barrel assembly with six protruding coiled-coils. The alpha prefoldin subunits have two beta hairpin structures while the beta prefoldin subunits (this CD) have only one hairpin that is most similar to the second hairpin of the alpha subunit. The prefoldin hexamer consists of two alpha and four beta subunits and is assembled from the beta hairpins of all six subunits. The alpha subunits initially dimerize providing a structural nucleus for the assembly of the beta subunits. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the st
Probab=27.40 E-value=2.8e+02 Score=22.91 Aligned_cols=35 Identities=9% Similarity=0.158 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018372 181 REELLMAKNEEMKQMQDKVLRSFAEMENVKDRTIR 215 (357)
Q Consensus 181 ~ee~L~e~~~EleelkDk~lR~~AEfEN~RKR~~r 215 (357)
++..++.++.+++.+..++.....++.+++.++.+
T Consensus 68 Le~~~e~le~~i~~l~~~~~~l~~~~~elk~~l~~ 102 (105)
T cd00632 68 LKERLETIELRIKRLERQEEDLQEKLKELQEKIQQ 102 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444555566666666666666677666666543
No 135
>PRK14147 heat shock protein GrpE; Provisional
Probab=27.16 E-value=5e+02 Score=23.91 Aligned_cols=32 Identities=9% Similarity=0.101 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018372 190 EEMKQMQDKVLRSFAEMENVKDRTIREAENSK 221 (357)
Q Consensus 190 ~EleelkDk~lR~~AEfEN~RKR~~rE~e~ak 221 (357)
...+++.+.-.|+..|.++++++.....-...
T Consensus 43 R~~Ad~eN~rkR~~kE~e~~~~~a~~~~~~~l 74 (172)
T PRK14147 43 RERADLENQRKRIARDVEQARKFANEKLLGEL 74 (172)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34467777778888888888887766554433
No 136
>PF10211 Ax_dynein_light: Axonemal dynein light chain; InterPro: IPR019347 Axonemal dynein light chain proteins play a dynamic role in flagellar and cilial motility. Eukaryotic cilia and flagella are complex organelles consisting of a core structure, the axoneme, which is composed of nine microtubule doublets forming a cylinder that surrounds a pair of central singlet microtubules. This ultra-structural arrangement seems to be one of the most stable micro-tubular assemblies known and is responsible for the flagellar and ciliary movement of a large number of organisms ranging from protozoan to mammals. This light chain interacts directly with the N-terminal half of the heavy chains [].
Probab=26.54 E-value=5.2e+02 Score=23.92 Aligned_cols=35 Identities=20% Similarity=0.224 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018372 182 EELLMAKNEEMKQMQDKVLRSFAEMENVKDRTIRE 216 (357)
Q Consensus 182 ee~L~e~~~EleelkDk~lR~~AEfEN~RKR~~rE 216 (357)
+..+..++.+..+|+.+...+.+..+...++....
T Consensus 126 ~~~i~~L~~e~~~L~~~~~~l~~~~e~~ek~~~e~ 160 (189)
T PF10211_consen 126 EEEIEELEEEKEELEKQVQELKNKCEQLEKREEEL 160 (189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444445555555555555555555555554433
No 137
>PRK00736 hypothetical protein; Provisional
Probab=26.53 E-value=3.2e+02 Score=21.43 Aligned_cols=44 Identities=14% Similarity=0.245 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018372 177 LLKEREELLMAKNEEMKQMQDKVLRSFAEMENVKDRTIREAENS 220 (357)
Q Consensus 177 lv~e~ee~L~e~~~EleelkDk~lR~~AEfEN~RKR~~rE~e~a 220 (357)
.+.++|..+.-.+.-+++|.+-+.+.+.+++.+++++..=.++.
T Consensus 6 Ri~~LE~klafqe~tie~Ln~~v~~Qq~~i~~L~~ql~~L~~rl 49 (68)
T PRK00736 6 RLTELEIRVAEQEKTIEELSDQLAEQWKTVEQMRKKLDALTERF 49 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35566666666666677777777777777766666655444333
No 138
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=26.51 E-value=3.1e+02 Score=21.32 Aligned_cols=44 Identities=16% Similarity=0.215 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018372 172 DDLVKLLKEREELLMAKNEEMKQMQDKVLRSFAEMENVKDRTIR 215 (357)
Q Consensus 172 deL~klv~e~ee~L~e~~~EleelkDk~lR~~AEfEN~RKR~~r 215 (357)
++|...++=.+..++++...+......+.++...+..++.|+..
T Consensus 7 ~~LE~~la~qe~~ie~Ln~~v~~Qq~~I~~L~~~l~~L~~rl~~ 50 (69)
T PF04102_consen 7 EELEIKLAFQEDTIEELNDVVTEQQRQIDRLQRQLRLLRERLRE 50 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555566666666666666666666666666666666544
No 139
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=25.87 E-value=9.8e+02 Score=26.87 Aligned_cols=41 Identities=15% Similarity=0.215 Sum_probs=33.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018372 172 DDLVKLLKEREELLMAKNEEMKQMQDKVLRSFAEMENVKDR 212 (357)
Q Consensus 172 deL~klv~e~ee~L~e~~~EleelkDk~lR~~AEfEN~RKR 212 (357)
+-+.....++|.+++.++.++...++++..+..+.+.||+.
T Consensus 541 e~~r~r~~~lE~E~~~lr~elk~kee~~~~~e~~~~~lr~~ 581 (697)
T PF09726_consen 541 ESCRQRRRQLESELKKLRRELKQKEEQIRELESELQELRKY 581 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566778888888889999888888888888888777765
No 140
>PRK14143 heat shock protein GrpE; Provisional
Probab=25.87 E-value=6.2e+02 Score=24.61 Aligned_cols=38 Identities=13% Similarity=0.079 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018372 191 EMKQMQDKVLRSFAEMENVKDRTIREAENSKKFAIQNF 228 (357)
Q Consensus 191 EleelkDk~lR~~AEfEN~RKR~~rE~e~akk~Aie~f 228 (357)
..+++.+.-.|...|.+++++......-....-.+.+|
T Consensus 93 ~~AdfeN~RKR~~kE~e~~~~~a~~~~~~~lLpV~DnL 130 (238)
T PRK14143 93 IAADFDNFRKRTSREQEDLRLQLKCNTLSEILPVVDNF 130 (238)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 34566666777777888877776655544443333333
No 141
>cd07596 BAR_SNX The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=25.71 E-value=4.7e+02 Score=23.08 Aligned_cols=56 Identities=14% Similarity=0.171 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Q 018372 183 ELLMAKNEEMKQMQDKVLRSFAEMENVKDRTIREAENSKKFAIQNFAKALLDVADN 238 (357)
Q Consensus 183 e~L~e~~~EleelkDk~lR~~AEfEN~RKR~~rE~e~akk~Aie~f~kdLLpVlDn 238 (357)
..+..++.++.+++..+..+..+++.+..++..|.......-...|-.-|...+..
T Consensus 145 ~ki~~l~~~i~~~e~~~~~~~~~~~~i~~~~~~El~~f~~~~~~dlk~~l~~~~~~ 200 (218)
T cd07596 145 AKVEELEEELEEAESALEEARKRYEEISERLKEELKRFHEERARDLKAALKEFARL 200 (218)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 142
>PF03938 OmpH: Outer membrane protein (OmpH-like); InterPro: IPR005632 This entry includes outer membrane proteins such as OmpH (Skp) among others. OmpH (outer membrane protein H) is a major structural protein of the outer membrane. In Pasteurella multocida it acts as a channel-forming transmembrane porin []. Porins act as molecular sieves to allow the diffusion of small hydrophilic solutes through the outer membrane and also acts as a receptor for bacteriophages and bacteriocins. Porins are highly immunogenic and are conserved in bacterial families, making them attractive vaccine candidates []. The 17kDa protein (Skp, OmpH) of Escherichia coli is a homotrimeric periplasmic chaperone for newly synthesised outer-membrane proteins, the X-ray structure of which has been reported at resolutions of 2.35 A and 2.30 A [, ]. Three hairpin-shaped alpha-helical extensions reach out by approximately 60 A from a trimerisation domain, which is composed of three intersubunit beta-sheets that wind around a central axis. The alpha-helical extensions approach each other at their distal turns, resulting in a fold that resembles a 'three-pronged grasping forcep'. The overall shape of Skp is reminiscent of the cytosolic chaperone prefoldin (IPR009053 from INTERPRO), although it is based on a radically different topology. The peculiar architecture, with apparent plasticity of the prongs and distinct electrostatic and hydrophobic surface properties, supports the recently proposed biochemical mechanism of this chaperone: formation of a Skp(3)-Omp complex protects the outer membrane protein from aggregation during passage through the bacterial periplasm. The ability of Skp to prevent the aggregation of model substrates in vitro is independent of ATP. Skp can interact directly with membrane lipids and lipopolysaccharide. These interactions are needed for efficient Skp-assisted folding of membrane proteins [].; GO: 0051082 unfolded protein binding; PDB: 1SG2_C 1U2M_C.
Probab=25.68 E-value=4.3e+02 Score=22.71 Aligned_cols=20 Identities=20% Similarity=0.132 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHhCCCeeeC
Q 018372 274 EMTEKQLGEVFKKFGVEKFD 293 (357)
Q Consensus 274 eMi~kqL~~vL~k~GVe~Ie 293 (357)
..|..-+..+-++.|+.-|=
T Consensus 116 ~~i~~~v~~~a~~~g~~~Vl 135 (158)
T PF03938_consen 116 KKINKAVEEYAKENGYDLVL 135 (158)
T ss_dssp HHHHHHHHHHHHHTT-SEEE
T ss_pred HHHHHHHHHHHHHcCCeEEE
Confidence 44566667777888887763
No 143
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=25.61 E-value=6e+02 Score=26.98 Aligned_cols=39 Identities=8% Similarity=0.244 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018372 175 VKLLKEREELLMAKNEEMKQMQDKVLRSFAEMENVKDRT 213 (357)
Q Consensus 175 ~klv~e~ee~L~e~~~EleelkDk~lR~~AEfEN~RKR~ 213 (357)
.+..+.++..|+.++.++..+..++.+...+..++++++
T Consensus 58 ~~~~~kL~~~lk~~e~~i~~~~~ql~~s~~~l~~~~~~I 96 (420)
T COG4942 58 QDQRAKLEKQLKSLETEIASLEAQLIETADDLKKLRKQI 96 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhH
Confidence 344555666666667777777777777777776666554
No 144
>PF03357 Snf7: Snf7; InterPro: IPR005024 This is a family of eukaryotic proteins which are variously described as either hypothetical protein, developmental protein or related to yeast SNF7. The family contains human CHMP1. CHMP1 (CHromatin Modifying Protein; CHarged Multivesicular body Protein), is encoded by an alternative open reading frame in the PRSM1 gene [] and is conserved in both complex and simple eukaryotes. CHMP1 contains a predicted bipartite nuclear localisation signal and distributes as distinct forms to the cytoplasm and the nuclear matrix in all cell lines tested. Human CHMP1 is strongly implicated in multivesicular body formation. A multivesicular body is a vesicle-filled endosome that targets proteins to the interior of lysosomes. Immunocytochemistry and biochemical fractionation localise CHMP1 to early endosomes and CHMP1 physically interacts with SKD1/VPS4, a highly conserved protein directly linked to multivesicular body sorting in yeast. Similar to the action of a mutant SKD1 protein, over expression of a fusion derivative of human CHMP1 dilates endosomal compartments and disrupts the normal distribution of several endosomal markers. Genetic studies in Saccharomyces cerevisiae (Baker's yeast) further support a conserved role of CHMP1 in vesicle trafficking. Deletion of CHM1, the budding yeast homologue of CHMP1, results in defective sorting of carboxypeptidases S and Y and produces abnormal, multi-lamellar prevacuolar compartments. This phenotype classifies CHM1 as a member of the class E vacuolar protein sorting genes []. ; GO: 0015031 protein transport; PDB: 2V6X_B 2W2U_D 2GD5_D 3FRT_B 3FRV_A 4ABM_D 3EAB_H 3HTU_D.
Probab=25.49 E-value=4.4e+02 Score=22.67 Aligned_cols=25 Identities=16% Similarity=0.167 Sum_probs=15.2
Q ss_pred hhHHHHHHHH-----HHHHHHHHHHHHhCC
Q 018372 264 PLLKSLLEGV-----EMTEKQLGEVFKKFG 288 (357)
Q Consensus 264 ~~lksl~eGV-----eMi~kqL~~vL~k~G 288 (357)
..++.+..+| .-+...|...+...+
T Consensus 92 ~~Lk~~~~~i~~~~v~~~~d~~~e~~e~~~ 121 (171)
T PF03357_consen 92 KALKKINKQINLDKVEKLMDDFQEEMEDQD 121 (171)
T ss_dssp HHHHHHHHSTTSCCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhhhhhhHHHHHHHHHHHHHHHH
Confidence 4455555443 356677777777766
No 145
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=25.11 E-value=6.6e+02 Score=24.60 Aligned_cols=37 Identities=22% Similarity=0.374 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018372 185 LMAKNEEMKQMQDKVLRSFAEMENVKDRTIREAENSK 221 (357)
Q Consensus 185 L~e~~~EleelkDk~lR~~AEfEN~RKR~~rE~e~ak 221 (357)
+..++.++++++.++.+...+..-+|+|..+-.....
T Consensus 47 ~~~~~~e~e~le~qv~~~e~ei~~~r~r~~~~e~kl~ 83 (239)
T COG1579 47 LEALEIELEDLENQVSQLESEIQEIRERIKRAEEKLS 83 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4456677888888999999999999888877665553
No 146
>PRK10361 DNA recombination protein RmuC; Provisional
Probab=25.09 E-value=7.1e+02 Score=26.80 Aligned_cols=57 Identities=16% Similarity=0.315 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHhhHHHHHHHHhhh
Q 018372 188 KNEEMKQMQDKVLRSFAEMENVKDRTIREAENSK----KFAIQNFAKALLDVADNLGRASS 244 (357)
Q Consensus 188 ~~~EleelkDk~lR~~AEfEN~RKR~~rE~e~ak----k~Aie~f~kdLLpVlDnLERAle 244 (357)
.+++++.+.+.-.++..+|+|+=.++-.+..... +..+..+++-|=.-++.|+.-++
T Consensus 97 ~~ek~~~l~~~~~~L~~~F~~LA~~ile~k~~~f~~~~~~~l~~ll~Pl~e~l~~f~~~v~ 157 (475)
T PRK10361 97 ADDKIRQMINSEQRLSEQFENLANRIFEHSNRRVDEQNRQSLNSLLSPLREQLDGFRRQVQ 157 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 3444445555556677777777666654443332 22333344444444444444443
No 147
>PRK04325 hypothetical protein; Provisional
Probab=25.05 E-value=3.6e+02 Score=21.49 Aligned_cols=44 Identities=16% Similarity=0.092 Sum_probs=32.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018372 171 RDDLVKLLKEREELLMAKNEEMKQMQDKVLRSFAEMENVKDRTI 214 (357)
Q Consensus 171 ~deL~klv~e~ee~L~e~~~EleelkDk~lR~~AEfEN~RKR~~ 214 (357)
.++|...++=.+..++.+.+.+.+.+..+.++...+..+..|+.
T Consensus 11 i~~LE~klAfQE~tIe~LN~vv~~Qq~~I~~L~~ql~~L~~rl~ 54 (74)
T PRK04325 11 ITELEIQLAFQEDLIDGLNATVARQQQTLDLLQAQLRLLYQQMR 54 (74)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56677777777777777777777777777777777777777764
No 148
>PRK14153 heat shock protein GrpE; Provisional
Probab=24.87 E-value=5e+02 Score=24.52 Aligned_cols=30 Identities=13% Similarity=0.093 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018372 190 EEMKQMQDKVLRSFAEMENVKDRTIREAEN 219 (357)
Q Consensus 190 ~EleelkDk~lR~~AEfEN~RKR~~rE~e~ 219 (357)
...+++.+.-.|+..|.+.+++........
T Consensus 58 R~~AEfeN~rKR~~kE~e~~~~~a~~~~~~ 87 (194)
T PRK14153 58 RLAAEFDNFRKRTAREMEENRKFVLEQVLL 87 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334555666666666777776666554433
No 149
>cd00632 Prefoldin_beta Prefoldin beta; Prefoldin is a hexameric molecular chaperone complex, composed of two evolutionarily related subunits (alpha and beta), which are found in both eukaryotes and archaea. Prefoldin binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The hexameric structure consists of a double beta barrel assembly with six protruding coiled-coils. The alpha prefoldin subunits have two beta hairpin structures while the beta prefoldin subunits (this CD) have only one hairpin that is most similar to the second hairpin of the alpha subunit. The prefoldin hexamer consists of two alpha and four beta subunits and is assembled from the beta hairpins of all six subunits. The alpha subunits initially dimerize providing a structural nucleus for the assembly of the beta subunits. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the st
Probab=24.85 E-value=2.6e+02 Score=23.12 Aligned_cols=36 Identities=14% Similarity=0.163 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018372 174 LVKLLKEREELLMAKNEEMKQMQDKVLRSFAEMENV 209 (357)
Q Consensus 174 L~klv~e~ee~L~e~~~EleelkDk~lR~~AEfEN~ 209 (357)
|.+.++.++..++.++++++++..++..+.+.+..+
T Consensus 68 Le~~~e~le~~i~~l~~~~~~l~~~~~elk~~l~~~ 103 (105)
T cd00632 68 LKERLETIELRIKRLERQEEDLQEKLKELQEKIQQA 103 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555555556666666666666655555544
No 150
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=24.83 E-value=6.4e+02 Score=28.41 Aligned_cols=21 Identities=19% Similarity=0.528 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhC
Q 018372 267 KSLLEGVEMTEKQLGEVFKKF 287 (357)
Q Consensus 267 ksl~eGVeMi~kqL~~vL~k~ 287 (357)
..|.++|..|-..|..+|..+
T Consensus 1018 ~~f~~~f~~~~~~f~~~~~~l 1038 (1164)
T TIGR02169 1018 EVFMEAFEAINENFNEIFAEL 1038 (1164)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 467888888888888886655
No 151
>COG1322 Predicted nuclease of restriction endonuclease-like fold, RmuC family [General function prediction only]
Probab=24.46 E-value=8.8e+02 Score=25.83 Aligned_cols=67 Identities=15% Similarity=0.165 Sum_probs=48.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Q 018372 174 LVKLLKEREELLMAKNEEMKQMQDKVLRSFAEMENVKDRTIREAENSKKFAIQNFAKALLDVADNLG 240 (357)
Q Consensus 174 L~klv~e~ee~L~e~~~EleelkDk~lR~~AEfEN~RKR~~rE~e~akk~Aie~f~kdLLpVlDnLE 240 (357)
+..+.+.+...+....+++..+.+...++..+|++...++..+.......-.+..++.|+.+.-...
T Consensus 75 l~~l~~~l~~~~~~~~eq~~~l~~~~~ql~~~~~~~~~~i~e~~~~~~~el~~~~~~~Ll~~~~~~~ 141 (448)
T COG1322 75 LNELKARLQQQLLQSREQLQLLIESLAQLSSEFQELANEIFEELNRRLAELNQQNLKQLLKPLREVL 141 (448)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444455555566677788888899999999999999888888877777777777776554433
No 152
>PRK04406 hypothetical protein; Provisional
Probab=24.43 E-value=3.7e+02 Score=21.53 Aligned_cols=42 Identities=21% Similarity=0.214 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018372 172 DDLVKLLKEREELLMAKNEEMKQMQDKVLRSFAEMENVKDRT 213 (357)
Q Consensus 172 deL~klv~e~ee~L~e~~~EleelkDk~lR~~AEfEN~RKR~ 213 (357)
++|...++=.+..++.+.+.+...+..+.++.+.+..++.|+
T Consensus 14 ~~LE~~lAfQE~tIe~LN~~v~~Qq~~I~~L~~ql~~L~~rl 55 (75)
T PRK04406 14 NDLECQLAFQEQTIEELNDALSQQQLLITKMQDQMKYVVGKV 55 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444445555555555555555555555555555555555554
No 153
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=24.40 E-value=1.8e+02 Score=31.27 Aligned_cols=6 Identities=33% Similarity=0.517 Sum_probs=2.5
Q ss_pred CCcccc
Q 018372 299 FDPHRH 304 (357)
Q Consensus 299 FDPnlH 304 (357)
|.|..+
T Consensus 172 ~~~g~~ 177 (475)
T PRK13729 172 FYPGNG 177 (475)
T ss_pred cCCCCC
Confidence 444333
No 154
>PF11629 Mst1_SARAH: C terminal SARAH domain of Mst1; InterPro: IPR024205 The SARAH (Sav/Rassf/Hpo) domain is found at the C terminus in three classes of eukaryotic tumour suppressors that give the domain its name. In the Sav (Salvador) and Hpo (Hippo) families, the SARAH domain mediates signal transduction from Hpo via the Sav scaffolding protein to the downstream component Wts (Warts); the phosphorylation of Wts by Hpo triggers cell cycle arrest and apoptosis by down-regulating cyclin E, Diap 1 and other targets []. The SARAH domain is also involved in dimerisation, as in the human Hpo orthologue, Mst1, which homodimerises via its C-terminal SARAH domain. The SARAH domain is found associated with other domains, such as protein kinase domains, WW/rsp5/WWP domain (IPR001202 from INTERPRO), C1 domain (IPR002219 from INTERPRO), LIM domain (IPR001781 from INTERPRO), or the Ras-associating (RA) domain (IPR000159 from INTERPRO).; GO: 0004674 protein serine/threonine kinase activity; PDB: 2JO8_A.
Probab=24.32 E-value=2.8e+02 Score=21.03 Aligned_cols=30 Identities=17% Similarity=0.264 Sum_probs=15.4
Q ss_pred hccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018372 167 IELSRDDLVKLLKEREELLMAKNEEMKQMQDKV 199 (357)
Q Consensus 167 ~~ls~deL~klv~e~ee~L~e~~~EleelkDk~ 199 (357)
..+|.+||...++-+... .+.|++++..+|
T Consensus 6 k~ls~~eL~~rl~~LD~~---ME~Eieelr~RY 35 (49)
T PF11629_consen 6 KFLSYEELQQRLASLDPE---MEQEIEELRQRY 35 (49)
T ss_dssp GGS-HHHHHHHHHHHHHH---HHHHHHHHHHHH
T ss_pred hhCCHHHHHHHHHhCCHH---HHHHHHHHHHHH
Confidence 356777777666655433 334444444444
No 155
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=24.16 E-value=4.6e+02 Score=22.44 Aligned_cols=41 Identities=17% Similarity=0.307 Sum_probs=30.6
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018372 170 SRDDLVKLLKEREELLMAKNEEMKQMQDKVLRSFAEMENVK 210 (357)
Q Consensus 170 s~deL~klv~e~ee~L~e~~~EleelkDk~lR~~AEfEN~R 210 (357)
...+|-..+.++++.+..+-.++.+|+..+..+..|-..+|
T Consensus 2 dk~~l~~~l~~le~~l~~l~~~~~~LK~~~~~l~EEN~~L~ 42 (107)
T PF06156_consen 2 DKKELFDRLDQLEQQLGQLLEELEELKKQLQELLEENARLR 42 (107)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44577778888888888888888888888877776654444
No 156
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....
Probab=24.16 E-value=3.1e+02 Score=20.56 Aligned_cols=32 Identities=16% Similarity=0.260 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018372 178 LKEREELLMAKNEEMKQMQDKVLRSFAEMENV 209 (357)
Q Consensus 178 v~e~ee~L~e~~~EleelkDk~lR~~AEfEN~ 209 (357)
+.+++..+..+..+...|...+..+..++..+
T Consensus 28 ~~~Le~~~~~L~~en~~L~~~~~~L~~~~~~L 59 (64)
T PF00170_consen 28 IEELEEKVEELESENEELKKELEQLKKEIQSL 59 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444444444333
No 157
>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold). The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.
Probab=24.12 E-value=4.2e+02 Score=23.07 Aligned_cols=47 Identities=11% Similarity=0.150 Sum_probs=21.7
Q ss_pred ccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018372 168 ELSRDDLVKLLKEREELLMAKNEEMKQMQDKVLRSFAEMENVKDRTI 214 (357)
Q Consensus 168 ~ls~deL~klv~e~ee~L~e~~~EleelkDk~lR~~AEfEN~RKR~~ 214 (357)
..|.++|.+.-.+++..+..++.+......+..-++|.+.-.++-+.
T Consensus 29 K~S~~eL~kqkd~L~~~l~~L~~q~~s~~qr~~eLqaki~ea~~~le 75 (107)
T PF09304_consen 29 KTSQGELAKQKDQLRNALQSLQAQNASRNQRIAELQAKIDEARRNLE 75 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33455554444444444444444444444444444444444444333
No 158
>PF08429 PLU-1: PLU-1-like protein; InterPro: IPR013637 This domain is found in the central region of lysine-specific demethylases, which are nuclear proteins that may have a role in DNA-binding and transcription, and are associated with malignant cancer phenotypes []. The domain is also found in various other Jumonji/ARID domain-containing proteins (see IPR013129 from INTERPRO, IPR001606 from INTERPRO). ; GO: 0016706 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors, 0055114 oxidation-reduction process
Probab=24.11 E-value=2.8e+02 Score=27.15 Aligned_cols=18 Identities=39% Similarity=0.471 Sum_probs=13.9
Q ss_pred hhhccCHHHHHHHHHHHH
Q 018372 165 SEIELSRDDLVKLLKERE 182 (357)
Q Consensus 165 ~e~~ls~deL~klv~e~e 182 (357)
+...++.++|..++.+..
T Consensus 79 ~~~~~~l~~l~~Ll~e~~ 96 (335)
T PF08429_consen 79 SRNKLTLEELEALLEEIE 96 (335)
T ss_pred ccccCCHHHHHHHHHHHh
Confidence 456789999988887754
No 159
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=24.04 E-value=3.9e+02 Score=26.49 Aligned_cols=18 Identities=17% Similarity=0.209 Sum_probs=8.9
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 018372 186 MAKNEEMKQMQDKVLRSF 203 (357)
Q Consensus 186 ~e~~~EleelkDk~lR~~ 203 (357)
++++.++++.++++.|+.
T Consensus 159 eele~e~ee~~erlk~le 176 (290)
T COG4026 159 EELEAEYEEVQERLKRLE 176 (290)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 334445555555555544
No 160
>PRK10869 recombination and repair protein; Provisional
Probab=24.01 E-value=4.8e+02 Score=28.07 Aligned_cols=27 Identities=11% Similarity=0.204 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHH
Q 018372 215 REAENSKKFAIQNFAKALLDVADNLGR 241 (357)
Q Consensus 215 rE~e~akk~Aie~f~kdLLpVlDnLER 241 (357)
.+....++.+...|.+.+...+.+|..
T Consensus 362 ~~LS~~R~~aA~~l~~~v~~~L~~L~m 388 (553)
T PRK10869 362 QKLHQSRQRYAKELAQLITESMHELSM 388 (553)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 445555666677777777777777665
No 161
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=24.01 E-value=3.8e+02 Score=21.42 Aligned_cols=53 Identities=13% Similarity=-0.016 Sum_probs=0.0
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018372 170 SRDDLVKLLKEREELLMAKNEEMKQMQDKVLRSFAEMENVKDRTIREAENSKK 222 (357)
Q Consensus 170 s~deL~klv~e~ee~L~e~~~EleelkDk~lR~~AEfEN~RKR~~rE~e~akk 222 (357)
+..-|...+.++.++-..+..+...|+....+++.+..+...|+..=...+..
T Consensus 19 ti~~Lq~e~eeLke~n~~L~~e~~~L~~en~~L~~e~~~~~~rl~~LL~kl~~ 71 (72)
T PF06005_consen 19 TIALLQMENEELKEKNNELKEENEELKEENEQLKQERNAWQERLRSLLGKLEE 71 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
No 162
>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins. These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane
Probab=23.66 E-value=3e+02 Score=26.77 Aligned_cols=40 Identities=15% Similarity=0.145 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018372 173 DLVKLLKEREELLMAKNEEMKQMQDKVLRSFAEMENVKDR 212 (357)
Q Consensus 173 eL~klv~e~ee~L~e~~~EleelkDk~lR~~AEfEN~RKR 212 (357)
=..+.+.|+|+++.....++..|+.++..++||--.+-.+
T Consensus 90 RFR~Rn~ELE~elr~~~~~~~~L~~Ev~~L~~DN~kLYEK 129 (248)
T PF08172_consen 90 RFRQRNAELEEELRKQQQTISSLRREVESLRADNVKLYEK 129 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3345566677777666666677766666666664444333
No 163
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=23.46 E-value=5e+02 Score=24.13 Aligned_cols=41 Identities=7% Similarity=0.061 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018372 175 VKLLKEREELLMAKNEEMKQMQDKVLRSFAEMENVKDRTIR 215 (357)
Q Consensus 175 ~klv~e~ee~L~e~~~EleelkDk~lR~~AEfEN~RKR~~r 215 (357)
...++++...++.+++++..|..++.-..-|++-+...+.|
T Consensus 110 ~~e~~~l~~~~e~Le~e~~~L~~~~~~~~eDY~~L~~Im~R 150 (161)
T TIGR02894 110 KNQNESLQKRNEELEKELEKLRQRLSTIEEDYQTLIDIMDR 150 (161)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444445555555555555544445555544444433
No 164
>cd07679 F-BAR_PACSIN2 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Protein kinase C and Casein kinase Substrate in Neurons 2 (PACSIN2). F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Protein kinase C and Casein kinase Substrate in Neurons (PACSIN) proteins, also called Synaptic dynamin-associated proteins (Syndapins), act as regulators of cytoskeletal and membrane dynamics. Vetebrates harbor three isoforms with distinct expression patterns and specific functions. PACSIN 2 or Syndapin II is expressed ubiquitously and is involved in the regulation of tubulin polymerization. It associates with Golgi membranes and forms a complex with dynamin II which is crucial in promoting vesicle formation from the trans-Golgi network. PACSIN 2 contains an N-terminal F-BAR domain and a C-terminal SH3 domain. F-BAR domains form banana-shaped dimers with a positively-charged concave su
Probab=23.17 E-value=7.4e+02 Score=24.52 Aligned_cols=69 Identities=14% Similarity=0.209 Sum_probs=49.3
Q ss_pred hhhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHhhHHHH
Q 018372 165 SEIELSRDDLVKLLKEREELLMAKNEEMKQMQDKVLRSFAEMENVKDRTIREAENSKKFA------IQNFAKALLDVAD 237 (357)
Q Consensus 165 ~e~~ls~deL~klv~e~ee~L~e~~~EleelkDk~lR~~AEfEN~RKR~~rE~e~akk~A------ie~f~kdLLpVlD 237 (357)
++..++.+++.|+-. .++..+.++..-+++|.....++..|+.+..++....-... .-.|++.+|-.+-
T Consensus 161 ~d~~~~~~q~~K~~~----k~~k~~~~~~k~~~~Y~~~l~~L~~~~~~y~e~m~~~fe~~Q~~E~eRi~F~K~~l~~~~ 235 (258)
T cd07679 161 ADPALNPEQLKKLQD----KVEKCKQDVLKTKEKYEKSLKELDQTTPQYMENMEQVFEQCQQFEEKRLRFFREVLLEVQ 235 (258)
T ss_pred cCCcCCHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345677788765533 45566778888899999999999999999988876554332 3467777766554
No 165
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=23.11 E-value=1.4e+02 Score=27.23 Aligned_cols=30 Identities=17% Similarity=0.303 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018372 186 MAKNEEMKQMQDKVLRSFAEMENVKDRTIR 215 (357)
Q Consensus 186 ~e~~~EleelkDk~lR~~AEfEN~RKR~~r 215 (357)
+...+|++++++++..+.+|++.+|+..+.
T Consensus 157 ~~~~~ei~~lk~el~~~~~~~~~LkkQ~~~ 186 (192)
T PF05529_consen 157 KKLSEEIEKLKKELEKKEKEIEALKKQSEG 186 (192)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334455666666666666666666666544
No 166
>PRK00295 hypothetical protein; Provisional
Probab=22.38 E-value=3.9e+02 Score=20.95 Aligned_cols=45 Identities=16% Similarity=0.128 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018372 171 RDDLVKLLKEREELLMAKNEEMKQMQDKVLRSFAEMENVKDRTIR 215 (357)
Q Consensus 171 ~deL~klv~e~ee~L~e~~~EleelkDk~lR~~AEfEN~RKR~~r 215 (357)
.++|...++-.+..++.+.+.+......+.++...+..++.|+..
T Consensus 7 i~~LE~kla~qE~tie~Ln~~v~~Qq~~I~~L~~ql~~L~~rl~~ 51 (68)
T PRK00295 7 VTELESRQAFQDDTIQALNDVLVEQQRVIERLQLQMAALIKRQEE 51 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456666777777777777777777777777777777777777654
No 167
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=22.35 E-value=1.9e+02 Score=26.20 Aligned_cols=29 Identities=14% Similarity=0.191 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018372 178 LKEREELLMAKNEEMKQMQDKVLRSFAEM 206 (357)
Q Consensus 178 v~e~ee~L~e~~~EleelkDk~lR~~AEf 206 (357)
+++++++|+..+.+++.++.+...+..||
T Consensus 163 i~~lk~el~~~~~~~~~LkkQ~~~l~~ey 191 (192)
T PF05529_consen 163 IEKLKKELEKKEKEIEALKKQSEGLQKEY 191 (192)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 33334444444444555555544444443
No 168
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=22.32 E-value=4.8e+02 Score=28.65 Aligned_cols=35 Identities=23% Similarity=0.296 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018372 173 DLVKLLKEREELLMAKNEEMKQMQDKVLRSFAEME 207 (357)
Q Consensus 173 eL~klv~e~ee~L~e~~~EleelkDk~lR~~AEfE 207 (357)
+|.+.+.++...+..+..+++.++..+..+..+.+
T Consensus 332 ~l~~~l~~l~~~i~~~~~~~~~l~~~~~q~~~e~~ 366 (594)
T PF05667_consen 332 ELQEQLDELESQIEELEAEIKMLKSSLKQLEEELE 366 (594)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444444444444433333
No 169
>PRK00736 hypothetical protein; Provisional
Probab=21.86 E-value=4e+02 Score=20.88 Aligned_cols=44 Identities=11% Similarity=0.204 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018372 171 RDDLVKLLKEREELLMAKNEEMKQMQDKVLRSFAEMENVKDRTI 214 (357)
Q Consensus 171 ~deL~klv~e~ee~L~e~~~EleelkDk~lR~~AEfEN~RKR~~ 214 (357)
.++|...++-.+..++.+...+......+.++...+..+..|+.
T Consensus 7 i~~LE~klafqe~tie~Ln~~v~~Qq~~i~~L~~ql~~L~~rl~ 50 (68)
T PRK00736 7 LTELEIRVAEQEKTIEELSDQLAEQWKTVEQMRKKLDALTERFL 50 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666666767777777777777766666677777777776664
No 170
>PRK02793 phi X174 lysis protein; Provisional
Probab=21.81 E-value=4.1e+02 Score=21.03 Aligned_cols=45 Identities=9% Similarity=0.025 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018372 171 RDDLVKLLKEREELLMAKNEEMKQMQDKVLRSFAEMENVKDRTIR 215 (357)
Q Consensus 171 ~deL~klv~e~ee~L~e~~~EleelkDk~lR~~AEfEN~RKR~~r 215 (357)
..+|...++=.+..++.+.+.+...+..+.++.+.+..++.|+..
T Consensus 10 i~~LE~~lafQe~tIe~Ln~~v~~Qq~~I~~L~~~l~~L~~rl~~ 54 (72)
T PRK02793 10 LAELESRLAFQEITIEELNVTVTAHEMEMAKLRDHLRLLTEKLKA 54 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 355666666666777777777777776777777777777776643
No 171
>PF12240 Angiomotin_C: Angiomotin C terminal; InterPro: IPR024646 This domain represents the C-terminal region of angiomotin. Angiomotin regulates the action of angiogenesis-inhibitor angiostatin []. The C-terminal region of angiomotin appears to be involved in directing the protein chemotactically [].
Probab=21.76 E-value=2.1e+02 Score=27.54 Aligned_cols=33 Identities=30% Similarity=0.496 Sum_probs=29.2
Q ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018372 169 LSRDDLVKLLKEREELLMAKNEEMKQMQDKVLR 201 (357)
Q Consensus 169 ls~deL~klv~e~ee~L~e~~~EleelkDk~lR 201 (357)
.+...|.+++.++++.|-.++.+...|+.+|+-
T Consensus 57 ~~~~~L~~~LrEkEErILaLEad~~kWEqkYLE 89 (205)
T PF12240_consen 57 NNASNLKELLREKEERILALEADMTKWEQKYLE 89 (205)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 577889999999999999999999999988864
No 172
>PRK02119 hypothetical protein; Provisional
Probab=21.69 E-value=4.2e+02 Score=21.08 Aligned_cols=43 Identities=14% Similarity=0.133 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018372 172 DDLVKLLKEREELLMAKNEEMKQMQDKVLRSFAEMENVKDRTI 214 (357)
Q Consensus 172 deL~klv~e~ee~L~e~~~EleelkDk~lR~~AEfEN~RKR~~ 214 (357)
++|...++=.+..++.+...+...+..+.++.+.+..++.|+.
T Consensus 12 ~~LE~rla~QE~tie~LN~~v~~Qq~~id~L~~ql~~L~~rl~ 54 (73)
T PRK02119 12 AELEMKIAFQENLLEELNQALIEQQFVIDKMQVQLRYMANKLK 54 (73)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555555666666666666666566666666666666653
No 173
>PRK14148 heat shock protein GrpE; Provisional
Probab=21.66 E-value=6.9e+02 Score=23.61 Aligned_cols=31 Identities=13% Similarity=0.139 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018372 191 EMKQMQDKVLRSFAEMENVKDRTIREAENSK 221 (357)
Q Consensus 191 EleelkDk~lR~~AEfEN~RKR~~rE~e~ak 221 (357)
..+++.+.-.|+..|.++.++..........
T Consensus 66 ~~Ae~eN~rKR~~rE~e~~~~~a~~~~~~~L 96 (195)
T PRK14148 66 AKAEMENIRKRAERDVSNARKFGIEKFAKEL 96 (195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456666677777888888777665554433
No 174
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=21.50 E-value=3e+02 Score=27.33 Aligned_cols=15 Identities=13% Similarity=0.158 Sum_probs=8.0
Q ss_pred HHhhHHHHHHHHhhh
Q 018372 230 KALLDVADNLGRASS 244 (357)
Q Consensus 230 kdLLpVlDnLERAle 244 (357)
..++.-+..+++.++
T Consensus 254 ~~l~~eI~e~~~~~~ 268 (325)
T PF08317_consen 254 QELLAEIAEAEKIRE 268 (325)
T ss_pred HHHHHHHHHHHHHHH
Confidence 344445556666655
No 175
>cd04766 HTH_HspR Helix-Turn-Helix DNA binding domain of the HspR transcription regulator. Helix-turn-helix (HTH) transcription regulator HspR, N-terminal domain. Heat shock protein regulators (HspR) have been shown to regulate expression of specific regulons in response to high temperature or high osmolarity in Streptomyces and Helicobacter, respectively. These proteins share the N-terminal DNA binding domain with other transcription regulators of the MerR superfamily that promote transcription by reconfiguring the spacer between the -35 and -10 promoter elements. A typical MerR regulator is comprised of distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their conserved N-terminal domains contain predicted winged HTH motifs that mediate DNA binding, while the dissimilar C-terminal domains bind specific coactivator molecules.
Probab=21.32 E-value=2e+02 Score=23.04 Aligned_cols=20 Identities=15% Similarity=0.363 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 018372 195 MQDKVLRSFAEMENVKDRTI 214 (357)
Q Consensus 195 lkDk~lR~~AEfEN~RKR~~ 214 (357)
|.+++..++++++.+++.+.
T Consensus 70 l~~~~~~l~~~l~~l~~~~~ 89 (91)
T cd04766 70 LEEELAELRAELDELRARLR 89 (91)
T ss_pred HHHHHHHHHHHHHHHHHHhc
Confidence 44455555555555555443
No 176
>PLN03184 chloroplast Hsp70; Provisional
Probab=21.19 E-value=8.7e+02 Score=26.74 Aligned_cols=73 Identities=14% Similarity=0.214 Sum_probs=34.7
Q ss_pred hccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhh
Q 018372 167 IELSRDDLVKLLKEREELLMAKNEEMKQMQDKVLRSFAEMENVKDRTIREAENSKKFAIQNFAKALLDVADNLGRASS 244 (357)
Q Consensus 167 ~~ls~deL~klv~e~ee~L~e~~~EleelkDk~lR~~AEfEN~RKR~~rE~e~akk~Aie~f~kdLLpVlDnLERAle 244 (357)
..++.+++.+...+.++. ....+...+..+ ++-++|.|--++++-..+...+....-...|...++.++..+.
T Consensus 537 ~~ls~eei~~~~~~~~~~-~~~D~~~~~~~e----akN~lE~~iy~~r~~l~e~~~~~~~eer~~l~~~l~~~e~wL~ 609 (673)
T PLN03184 537 STLPKDEVERMVQEAEKF-AKEDKEKRDAVD----TKNQADSVVYQTEKQLKELGDKVPADVKEKVEAKLKELKDAIA 609 (673)
T ss_pred ccccHHHHHHHHHHHHHh-hhhhHHHHHHHH----HHHhHHHHHHHHHHHHHHHhhhCCHHHHHHHHHHHHHHHHHHh
Confidence 457888876665554322 221122222221 2222333333333333334444555555666777777777765
No 177
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=21.00 E-value=7.2e+02 Score=23.55 Aligned_cols=72 Identities=7% Similarity=0.002 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhh
Q 018372 171 RDDLVKLLKEREELLMAKNEEMKQMQDKVLRSFAEMENVKDRTIREAENSKKFAIQNFAKALLDVADNLGRASS 244 (357)
Q Consensus 171 ~deL~klv~e~ee~L~e~~~EleelkDk~lR~~AEfEN~RKR~~rE~e~akk~Aie~f~kdLLpVlDnLERAle 244 (357)
.+++...-.++..++..+.+|++.++....++.+-.+..++.+..-..++. .++..-..|.|++..+-..++
T Consensus 44 id~~~~e~~~L~~e~~~l~~e~e~L~~~~~~l~~~v~~q~~el~~L~~qi~--~~~~~~~~l~p~m~~m~~~L~ 115 (251)
T PF11932_consen 44 IDQWDDEKQELLAEYRQLEREIENLEVYNEQLERQVASQEQELASLEQQIE--QIEETRQELVPLMEQMIDELE 115 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHH
No 178
>PF13864 Enkurin: Calmodulin-binding
Probab=20.92 E-value=3.2e+02 Score=22.44 Aligned_cols=41 Identities=12% Similarity=0.264 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018372 181 REELLMAKNEEMKQMQDKVLRSFAEMENVKDRTIREAENSK 221 (357)
Q Consensus 181 ~ee~L~e~~~EleelkDk~lR~~AEfEN~RKR~~rE~e~ak 221 (357)
+.+.|..+++.+.++..+|.++=-=++.++.+..|+.-+..
T Consensus 42 R~~lL~~Lk~~~~el~~ey~~lp~~~DT~~~~~rK~~lE~~ 82 (98)
T PF13864_consen 42 RQELLEGLKKNWDELNKEYQKLPFSIDTLRKKRRKEELEKE 82 (98)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCcccCCHHHHHHHHHHHHH
Confidence 34455666677777888887766667777777776655444
No 179
>COG0497 RecN ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=20.81 E-value=6.2e+02 Score=27.78 Aligned_cols=32 Identities=16% Similarity=0.388 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018372 186 MAKNEEMKQMQDKVLRSFAEMENVKDRTIREA 217 (357)
Q Consensus 186 ~e~~~EleelkDk~lR~~AEfEN~RKR~~rE~ 217 (357)
+.++++++.++.+|..+...+-..|++..+..
T Consensus 345 ~~Le~~~~~l~~~~~~~A~~Ls~~R~~~A~~L 376 (557)
T COG0497 345 EALEKEVKKLKAELLEAAEALSAIRKKAAKEL 376 (557)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444445555555555555555555544443
No 180
>PF14584 DUF4446: Protein of unknown function (DUF4446)
Probab=20.76 E-value=3.2e+02 Score=24.73 Aligned_cols=54 Identities=19% Similarity=0.335 Sum_probs=35.3
Q ss_pred HHHHHHHHHHHHHHHHHHhCCCeeeCCCCCCCCccccceeeeccCCCCCCCceEEEe
Q 018372 268 SLLEGVEMTEKQLGEVFKKFGVEKFDPINEPFDPHRHNAMFQLPDNSKPPGTVAHVL 324 (357)
Q Consensus 268 sl~eGVeMi~kqL~~vL~k~GVe~IepvGe~FDPnlHEAV~~v~~~e~e~gtVveVl 324 (357)
.+.+-+..+...+...+.+.||.++++-++ -=-.+-=++... ++..+|.|+.-+
T Consensus 64 ~~~~~~~~l~~~~~~~~~kvgvvRYnAF~d-mGg~LSFslAlL--D~~~nGvVltsI 117 (151)
T PF14584_consen 64 ELEKRIEELEEKLRNCVQKVGVVRYNAFED-MGGDLSFSLALL--DDNNNGVVLTSI 117 (151)
T ss_pred HHHHHHHHHHHHHHhccceEEEEEccCccc-ccccceeeeEEE--eCCCCEEEEEee
Confidence 456667778889999999999999998432 111333344444 345577776654
No 181
>TIGR02338 gimC_beta prefoldin, beta subunit, archaeal. Chaperonins are cytosolic, ATP-dependent molecular chaperones, with a conserved toroidal architecture, that assist in the folding of nascent and/or denatured polypeptide chains. The group I chaperonin system consists of GroEL and GroES, and is found (usually) in bacteria and organelles of bacterial origin. The group II chaperonin system, called the thermosome in Archaea and TRiC or CCT in the Eukaryota, is structurally similar but only distantly related. Prefoldin, also called GimC, is a complex in Archaea and Eukaryota, that works with group II chaperonins. Members of this protein family are the archaeal clade of the beta class of prefoldin subunit. Closely related, but outside the scope of this family are the eukaryotic beta-class prefoldin subunits, Gim-1,3,4 and 6. The alpha class prefoldin subunits are more distantly related.
Probab=20.73 E-value=4.5e+02 Score=21.96 Aligned_cols=34 Identities=12% Similarity=0.149 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018372 182 EELLMAKNEEMKQMQDKVLRSFAEMENVKDRTIR 215 (357)
Q Consensus 182 ee~L~e~~~EleelkDk~lR~~AEfEN~RKR~~r 215 (357)
+..++.++..++.+..+..++...+.+.++.++.
T Consensus 73 ~~r~e~ie~~i~~lek~~~~l~~~l~e~q~~l~~ 106 (110)
T TIGR02338 73 KEKKETLELRVKTLQRQEERLREQLKELQEKIQE 106 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444555666666666666666666655543
No 182
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=20.65 E-value=5.5e+02 Score=22.10 Aligned_cols=14 Identities=21% Similarity=0.278 Sum_probs=5.5
Q ss_pred HHHHHHHHHHHHHH
Q 018372 206 MENVKDRTIREAEN 219 (357)
Q Consensus 206 fEN~RKR~~rE~e~ 219 (357)
++.-|..+++++..
T Consensus 96 w~~qk~~le~e~~~ 109 (132)
T PF07926_consen 96 WEEQKEQLEKELSE 109 (132)
T ss_pred HHHHHHHHHHHHHH
Confidence 33334444444333
No 183
>PRK06231 F0F1 ATP synthase subunit B; Validated
Probab=20.56 E-value=7e+02 Score=23.28 Aligned_cols=31 Identities=10% Similarity=0.125 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Q 018372 204 AEMENVKDRTIREAENSKKFAIQNFAKALLD 234 (357)
Q Consensus 204 AEfEN~RKR~~rE~e~akk~Aie~f~kdLLp 234 (357)
.+.+.+....+.+++..+..+...+-..+..
T Consensus 140 ~eae~ii~~A~~~Ie~Ek~~a~~~Lk~ei~~ 170 (205)
T PRK06231 140 RQANLIIFQARQEIEKERRELKEQLQKESVE 170 (205)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444444444444333
No 184
>PF10267 Tmemb_cc2: Predicted transmembrane and coiled-coil 2 protein; InterPro: IPR019394 This family of transmembrane coiled-coil containing proteins is conserved from worms to humans. Its function is unknown.
Probab=20.43 E-value=7.7e+02 Score=25.85 Aligned_cols=19 Identities=11% Similarity=0.218 Sum_probs=10.0
Q ss_pred HHHHHHHHHhhHHHHHHHH
Q 018372 223 FAIQNFAKALLDVADNLGR 241 (357)
Q Consensus 223 ~Aie~f~kdLLpVlDnLER 241 (357)
|-...-++|+-++++++.-
T Consensus 294 Yqs~eRaRdi~E~~Es~qt 312 (395)
T PF10267_consen 294 YQSYERARDIWEVMESCQT 312 (395)
T ss_pred HHHHHHHhHHHHHHHHHHH
Confidence 3334455666666665543
No 185
>KOG3647 consensus Predicted coiled-coil protein [General function prediction only]
Probab=20.30 E-value=3.7e+02 Score=27.24 Aligned_cols=25 Identities=24% Similarity=0.310 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 018372 191 EMKQMQDKVLRSFAEMENVKDRTIR 215 (357)
Q Consensus 191 EleelkDk~lR~~AEfEN~RKR~~r 215 (357)
..+.|..++.|-.+|+|..|||++.
T Consensus 134 dea~L~~Kierrk~ElEr~rkRle~ 158 (338)
T KOG3647|consen 134 DEAALGSKIERRKAELERTRKRLEA 158 (338)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445666777888888888888764
No 186
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=20.30 E-value=8.7e+02 Score=24.25 Aligned_cols=31 Identities=16% Similarity=0.215 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHhCCCe----eeCCCC
Q 018372 266 LKSLLEGVEMTEKQLGEVFKKFGVE----KFDPIN 296 (357)
Q Consensus 266 lksl~eGVeMi~kqL~~vL~k~GVe----~IepvG 296 (357)
...+-.|+..+.-.|.-+.+++|+. +|.|.|
T Consensus 168 W~EINAA~Gq~~LLL~~la~~l~~~f~~y~l~P~G 202 (314)
T PF04111_consen 168 WNEINAAWGQTALLLQTLAKKLNFKFQRYRLVPMG 202 (314)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCT---SSEEEE--G
T ss_pred hHHHHHHHHHHHHHHHHHHHHhCCCcccceeEecC
Confidence 3455556666666666666777776 344555
No 187
>PHA02109 hypothetical protein
Probab=20.23 E-value=3.1e+02 Score=26.20 Aligned_cols=41 Identities=29% Similarity=0.301 Sum_probs=27.7
Q ss_pred hhccCHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018372 166 EIELSRDDL------VKLLKEREELLMAKNEEMKQMQDKVLRSFAEM 206 (357)
Q Consensus 166 e~~ls~deL------~klv~e~ee~L~e~~~EleelkDk~lR~~AEf 206 (357)
+...+.+.| .+++.+++-.|+.+..|+..++++++..+|+.
T Consensus 177 ~~~~t~~~L~~~~~~L~~I~~L~~ki~~LS~E~~Q~~~Ki~N~R~~V 223 (233)
T PHA02109 177 ERSHTGENLEGLTDKLKQISELTIKLEALSDEACQVKHKILNLRAEV 223 (233)
T ss_pred HhccchhhhhhhhHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566666 46667777777777777777777777666653
Done!