Query 018372
Match_columns 357
No_of_seqs 210 out of 1180
Neff 4.4
Searched_HMMs 29240
Date Mon Mar 25 14:13:52 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018372.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/018372hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4ani_A Protein GRPE; chaperone 100.0 6.3E-46 2.2E-50 343.1 18.6 152 179-344 62-213 (213)
2 1dkg_A Nucleotide exchange fac 100.0 9.8E-46 3.3E-50 338.0 17.5 155 176-346 42-196 (197)
3 3a6m_A Protein GRPE, HSP-70 co 100.0 6.3E-46 2.1E-50 334.6 8.7 147 181-346 24-170 (177)
4 3swy_A Cyclic nucleotide-gated 84.6 5.2 0.00018 28.6 7.6 41 181-221 3-43 (46)
5 3swf_A CGMP-gated cation chann 81.5 11 0.00037 29.5 8.9 43 181-223 5-47 (74)
6 2v71_A Nuclear distribution pr 71.7 58 0.002 29.4 14.9 71 176-246 42-128 (189)
7 3tso_C RAB11 family-interactin 67.1 13 0.00043 29.3 5.9 34 167-200 12-45 (75)
8 2v4h_A NF-kappa-B essential mo 66.7 47 0.0016 27.7 9.7 40 168-207 23-62 (110)
9 3mq7_A Bone marrow stromal ant 64.7 24 0.00081 29.9 7.5 39 176-214 64-102 (121)
10 3nmd_A CGMP dependent protein 63.8 26 0.00091 27.2 7.1 42 170-211 20-61 (72)
11 2l5g_B Putative uncharacterize 63.2 15 0.00052 25.9 5.1 35 169-203 2-36 (42)
12 2v66_B Nuclear distribution pr 62.9 66 0.0022 26.8 14.9 71 176-246 3-75 (111)
13 3jsv_C NF-kappa-B essential mo 62.4 39 0.0013 27.5 8.2 39 169-207 2-40 (94)
14 3he5_A Synzip1; heterodimeric 59.9 40 0.0014 23.8 6.8 38 177-214 11-48 (49)
15 3etw_A Adhesin A; antiparallel 59.5 21 0.00071 30.2 6.3 37 195-243 69-105 (119)
16 3efg_A Protein SLYX homolog; x 53.2 40 0.0014 26.2 6.6 54 168-221 6-59 (78)
17 3ghg_A Fibrinogen alpha chain; 48.2 1.5E+02 0.005 30.9 11.6 15 234-248 110-124 (562)
18 4emc_A Monopolin complex subun 45.5 1.3E+02 0.0046 27.2 9.7 65 166-236 17-81 (190)
19 2gzd_C RAB11 family-interactin 45.2 8.2 0.00028 32.1 1.6 35 167-201 44-78 (107)
20 3nmd_A CGMP dependent protein 45.2 37 0.0013 26.4 5.2 33 178-210 35-67 (72)
21 1d7m_A Cortexillin I; coiled-c 41.5 99 0.0034 25.2 7.3 48 166-213 15-62 (101)
22 3hnw_A Uncharacterized protein 40.4 1.4E+02 0.0047 25.3 8.6 40 176-215 75-114 (138)
23 2yy0_A C-MYC-binding protein; 39.0 47 0.0016 24.0 4.6 24 173-196 23-46 (53)
24 2avr_X Adhesion A; antiparalle 37.7 71 0.0024 27.0 6.2 36 195-242 69-104 (119)
25 1gd2_E Transcription factor PA 36.0 56 0.0019 25.0 4.9 8 195-202 55-62 (70)
26 3hnw_A Uncharacterized protein 35.3 2E+02 0.0067 24.4 8.8 18 182-199 88-105 (138)
27 3htk_A Structural maintenance 34.7 1.2E+02 0.0041 21.4 8.1 48 173-220 9-56 (60)
28 3he4_B Synzip5; heterodimeric 34.5 1.2E+02 0.004 21.2 5.8 34 170-207 4-37 (46)
29 3na7_A HP0958; flagellar bioge 34.4 2.3E+02 0.0078 25.7 9.7 69 173-241 115-186 (256)
30 1gmj_A ATPase inhibitor; coile 33.9 1.4E+02 0.0048 23.8 7.0 13 199-211 60-72 (84)
31 3ukx_C Bimax2 peptide; arm rep 33.2 15 0.00051 23.3 1.0 19 145-163 2-20 (28)
32 4etp_A Kinesin-like protein KA 32.8 1.5E+02 0.005 29.2 8.6 15 278-292 131-145 (403)
33 2jee_A YIIU; FTSZ, septum, coi 31.7 1.9E+02 0.0065 22.8 10.1 38 174-211 11-48 (81)
34 2yy0_A C-MYC-binding protein; 31.6 83 0.0028 22.7 5.0 29 186-214 22-50 (53)
35 3plt_A Sphingolipid long chain 31.6 3.2E+02 0.011 25.4 11.7 58 190-247 138-195 (234)
36 1zxa_A CGMP-dependent protein 31.4 68 0.0023 24.5 4.7 26 171-196 13-38 (67)
37 3mq7_A Bone marrow stromal ant 30.2 1.4E+02 0.0047 25.3 6.7 33 178-210 73-105 (121)
38 2jee_A YIIU; FTSZ, septum, coi 29.8 1.7E+02 0.0058 23.1 6.9 19 195-213 53-71 (81)
39 3mq9_A Bone marrow stromal ant 29.5 85 0.0029 30.4 6.3 24 172-195 400-423 (471)
40 1j1d_B Troponin T, TNT; THIN f 27.6 2.5E+02 0.0087 22.9 7.9 48 166-213 39-86 (106)
41 1u2m_A Histone-like protein HL 27.0 49 0.0017 27.2 3.5 50 193-242 63-112 (143)
42 1l8d_A DNA double-strand break 26.7 2E+02 0.0068 22.5 7.0 39 176-214 64-102 (112)
43 2zvf_A Alanyl-tRNA synthetase; 25.5 84 0.0029 26.4 4.8 19 195-213 30-48 (171)
44 2zqm_A Prefoldin beta subunit 24.9 2.4E+02 0.0084 21.9 7.2 43 170-215 67-109 (117)
45 1t3j_A Mitofusin 1; coiled coi 24.6 1.7E+02 0.0057 23.8 6.1 19 192-210 73-91 (96)
46 4etp_A Kinesin-like protein KA 24.6 1.5E+02 0.0053 29.0 7.1 13 208-220 45-57 (403)
47 2wt7_B Transcription factor MA 24.2 2.4E+02 0.0081 22.6 6.9 34 181-214 53-86 (90)
48 2eqb_B RAB guanine nucleotide 23.9 2.9E+02 0.01 22.4 8.4 50 172-221 8-60 (97)
49 3t98_B Nucleoporin NUP58/NUP45 23.9 2.3E+02 0.0078 22.6 6.8 50 167-216 42-91 (93)
50 3u06_A Protein claret segregat 22.1 2.7E+02 0.0094 27.4 8.4 15 278-292 129-143 (412)
51 1ytz_T Troponin T; muscle, THI 21.6 2.6E+02 0.009 22.8 6.9 46 167-212 40-85 (107)
52 2xv5_A Lamin-A/C; structural p 21.2 2.8E+02 0.0095 21.2 8.4 14 208-221 40-53 (74)
53 2wuj_A Septum site-determining 20.3 1.3E+02 0.0043 21.8 4.2 35 169-203 20-54 (57)
54 3u06_A Protein claret segregat 20.1 3.8E+02 0.013 26.4 8.9 26 188-213 15-40 (412)
No 1
>4ani_A Protein GRPE; chaperone cycle, complementary assay; 4.09A {Geobacillus kaustophilus}
Probab=100.00 E-value=6.3e-46 Score=343.13 Aligned_cols=152 Identities=36% Similarity=0.568 Sum_probs=140.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhhhhhhhcccCCCCCC
Q 018372 179 KEREELLMAKNEEMKQMQDKVLRSFAEMENVKDRTIREAENSKKFAIQNFAKALLDVADNLGRASSVVKENFLKIDPSND 258 (357)
Q Consensus 179 ~e~ee~L~e~~~EleelkDk~lR~~AEfEN~RKR~~rE~e~akk~Aie~f~kdLLpVlDnLERAle~~~e~~~k~d~s~d 258 (357)
..++..|+.+++++++++|+|+|++|||+|||||++||++++++||+++|+++||||+|||+||+.+.+.
T Consensus 62 ~~l~~~l~~l~~e~~el~d~~lR~~AEfeN~RkR~~rE~e~~~~~a~e~~~~~LLpVlDnlerAl~~~~~---------- 131 (213)
T 4ani_A 62 AAAKAQIAELEAKLSEMEHRYLRLYADFENFRRRTRQEMEAAEKYRAQSLASDLLPVLDNFERALKIETD---------- 131 (213)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHSCCSC----------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhccc----------
Confidence 3445567778899999999999999999999999999999999999999999999999999999986432
Q ss_pred CCCchhhHHHHHHHHHHHHHHHHHHHHhCCCeeeCCCCCCCCccccceeeeccCCCCCCCceEEEeeccceeCCEeeeec
Q 018372 259 TAGAVPLLKSLLEGVEMTEKQLGEVFKKFGVEKFDPINEPFDPHRHNAMFQLPDNSKPPGTVAHVLKSGYTLYERVIRPA 338 (357)
Q Consensus 259 ~a~~n~~lksl~eGVeMi~kqL~~vL~k~GVe~IepvGe~FDPnlHEAV~~v~~~e~e~gtVveVlqkGY~L~dRVLRPA 338 (357)
+..+++|++||+||+++|.++|.++||++|+++|++|||++|+||++++++++++|||++|+|+||+|+|||||||
T Consensus 132 ----~~~~~~l~eGvemi~k~l~~~L~k~Gv~~I~~~Ge~FDP~~HeAv~~v~~~~~~~gtVv~V~qkGY~l~dRVLRpA 207 (213)
T 4ani_A 132 ----NEQAKSILQGMEMVYRSLVDALKKEGVEAIEAVGKPFDPYLHQAVMQAEAEGYEPNTVVEELQKGYKLKDRVLRPA 207 (213)
T ss_dssp ----CSTHHHHHHHHHHHHHHHHHHHHHTTEECCCCSSSCCCTTTEEEEEEECCSSSCSSSEEEEEECCCEETTSCCSCE
T ss_pred ----cccHHHHHHHHHHHHHHHHHHHHHCCCEEeCCCCCCCCHHHceeeeeecCCCCCCCcEEEEEeCCeEECCEEeece
Confidence 1235789999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEeec
Q 018372 339 EVGVTQ 344 (357)
Q Consensus 339 ~VvVsK 344 (357)
+|+|++
T Consensus 208 ~V~Va~ 213 (213)
T 4ani_A 208 MVKVSQ 213 (213)
T ss_dssp EEEEEC
T ss_pred EEEeCC
Confidence 999985
No 2
>1dkg_A Nucleotide exchange factor GRPE; HSP70, GRPE, nucleotide exchange factor, coiled-coil, complex (HSP24/HSP70); 2.80A {Escherichia coli} SCOP: b.73.1.1 h.1.9.1
Probab=100.00 E-value=9.8e-46 Score=338.00 Aligned_cols=155 Identities=37% Similarity=0.560 Sum_probs=135.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhhhhhhhcccCCC
Q 018372 176 KLLKEREELLMAKNEEMKQMQDKVLRSFAEMENVKDRTIREAENSKKFAIQNFAKALLDVADNLGRASSVVKENFLKIDP 255 (357)
Q Consensus 176 klv~e~ee~L~e~~~EleelkDk~lR~~AEfEN~RKR~~rE~e~akk~Aie~f~kdLLpVlDnLERAle~~~e~~~k~d~ 255 (357)
..++++++++++++. +++|+|+|++|||+|||||++||++++++||+++|+++||||+|||+||+.+...
T Consensus 42 ~~~~~l~~~l~e~~~---~~~d~~lR~~Ae~eN~rkR~~ke~~~~~~~a~~~~~~~LLpv~DnlerAl~~~~~------- 111 (197)
T 1dkg_A 42 EKVANLEAQLAEAQT---RERDGILRVKAEMENLRRRTELDIEKAHKFALEKFINELLPVIDSLDRALEVADK------- 111 (197)
T ss_dssp HHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSGGGHHHHSHHHHHHHHHHHHCC---------
T ss_pred HHHHHHHHHHHHHHH---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhcc-------
Confidence 334444444444332 4778999999999999999999999999999999999999999999999986531
Q ss_pred CCCCCCchhhHHHHHHHHHHHHHHHHHHHHhCCCeeeCCCCCCCCccccceeeeccCCCCCCCceEEEeeccceeCCEee
Q 018372 256 SNDTAGAVPLLKSLLEGVEMTEKQLGEVFKKFGVEKFDPINEPFDPHRHNAMFQLPDNSKPPGTVAHVLKSGYTLYERVI 335 (357)
Q Consensus 256 s~d~a~~n~~lksl~eGVeMi~kqL~~vL~k~GVe~IepvGe~FDPnlHEAV~~v~~~e~e~gtVveVlqkGY~L~dRVL 335 (357)
.++.+++|++||+||+++|.++|+++||++|+++|++|||++|+||++++++++++|||++|+|+||+||||||
T Consensus 112 ------~~~~~~~l~~Gv~~~~~~l~~~L~~~Gv~~i~~~G~~FDP~~HeAv~~~~~~~~~~~tVv~v~qkGY~l~dRvL 185 (197)
T 1dkg_A 112 ------ANPDMSAMVEDIELTLKSMLDVVRKFGVEVIAETNVPLDPNVHQAIAMVESDDVAPGNVLGIMQKGYTLNGRTI 185 (197)
T ss_dssp ----------CHHHHHHHHHHHHHHHHHHTTTTEEEECCCSSBCCTTSEEEEEEEECSSSCTTBEEEEEECEEEETTEEE
T ss_pred ------ccchHHHHHHHHHHHHHHHHHHHHHCCCEEeCCCCCCCCHHHhheeeeecCCCCCcCeEEEEeeCCeeeCCEEe
Confidence 01235789999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eecEEEeecCC
Q 018372 336 RPAEVGVTQAV 346 (357)
Q Consensus 336 RPA~VvVsK~~ 346 (357)
|||+|+|++++
T Consensus 186 RpA~V~V~~~~ 196 (197)
T 1dkg_A 186 RAAMVTVAKAK 196 (197)
T ss_dssp ECEEEEEEECC
T ss_pred cceEEEecCCC
Confidence 99999999854
No 3
>3a6m_A Protein GRPE, HSP-70 cofactor; coiled-coil, four-helix bundle, dimer, chaperone, STRE response; 3.23A {Thermus thermophilus}
Probab=100.00 E-value=6.3e-46 Score=334.58 Aligned_cols=147 Identities=33% Similarity=0.501 Sum_probs=136.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhhhhhhhcccCCCCCCCC
Q 018372 181 REELLMAKNEEMKQMQDKVLRSFAEMENVKDRTIREAENSKKFAIQNFAKALLDVADNLGRASSVVKENFLKIDPSNDTA 260 (357)
Q Consensus 181 ~ee~L~e~~~EleelkDk~lR~~AEfEN~RKR~~rE~e~akk~Aie~f~kdLLpVlDnLERAle~~~e~~~k~d~s~d~a 260 (357)
+++.+..+++++++++++|+|++|||+|||||+++|++++++||+++|+++||||+|||+||+.+.+.
T Consensus 24 l~~~~~~l~~e~~e~~d~~lR~~Ae~eN~rkR~~rE~e~~~~~a~e~~~~~LLpVlDnlerAl~~~~~------------ 91 (177)
T 3a6m_A 24 LEERLKAAEEELKGLKDKYLRLLADFDNYRKRMEEELKAREREGVLKALRALLPVLDDLDRALEFAEA------------ 91 (177)
T ss_dssp TTTSTTGGGGTSSSHHHHHHTTTTTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTGGG------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhhc------------
Confidence 34445667788899999999999999999999999999999999999999999999999999986531
Q ss_pred CchhhHHHHHHHHHHHHHHHHHHHHhCCCeeeCCCCCCCCccccceeeeccCCCCCCCceEEEeeccceeCCEeeeecEE
Q 018372 261 GAVPLLKSLLEGVEMTEKQLGEVFKKFGVEKFDPINEPFDPHRHNAMFQLPDNSKPPGTVAHVLKSGYTLYERVIRPAEV 340 (357)
Q Consensus 261 ~~n~~lksl~eGVeMi~kqL~~vL~k~GVe~IepvGe~FDPnlHEAV~~v~~~e~e~gtVveVlqkGY~L~dRVLRPA~V 340 (357)
+ +++|++||+||+++|.++|+++||++|+++|++|||++|+||+++++ ++|||++|+|+||+|+|||||||+|
T Consensus 92 --~--~~~l~~Gv~m~~~~l~~~L~k~Gv~~i~~~Ge~FDP~~HeAv~~~~~---~~gtVv~v~qkGY~l~dRvLRpA~V 164 (177)
T 3a6m_A 92 --S--PESIRQGVRAIRDGFFRILAGLGVEEVPGEGEAFDPRYHEAVGLLPG---EPGKVAKVFQRGFRMGEALVRPARV 164 (177)
T ss_dssp --C--HHHHHHHHHHHHHHHHHHHHHTTCEECCCTTSBCCTTTEEEEEEEES---STTBEEEEEECCEEETTEEEECEEE
T ss_pred --c--HHHHHHHHHHHHHHHHHHHHHCCCEEeCCCCCCCCHHHhhhhhcccC---CcCeEEEEeecCeeeCCEEecCeEE
Confidence 1 46899999999999999999999999999999999999999999987 8999999999999999999999999
Q ss_pred EeecCC
Q 018372 341 GVTQAV 346 (357)
Q Consensus 341 vVsK~~ 346 (357)
+|++++
T Consensus 165 ~V~~~~ 170 (177)
T 3a6m_A 165 AVGEEK 170 (177)
T ss_dssp EEEECC
T ss_pred EEeCCC
Confidence 999976
No 4
>3swy_A Cyclic nucleotide-gated cation channel alpha-3; coiled-coil, assembly domain, transport protein; 1.90A {Homo sapiens}
Probab=84.61 E-value=5.2 Score=28.63 Aligned_cols=41 Identities=15% Similarity=0.179 Sum_probs=32.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018372 181 REELLMAKNEEMKQMQDKVLRSFAEMENVKDRTIREAENSK 221 (357)
Q Consensus 181 ~ee~L~e~~~EleelkDk~lR~~AEfEN~RKR~~rE~e~ak 221 (357)
+|+.+..++.-++-|+.++.|+.|||+....++.+-+..+.
T Consensus 3 lEekv~~Le~~ld~LqTr~ArLlae~~ssq~KlKqRit~lE 43 (46)
T 3swy_A 3 LEEKVEQLGSSLDTLQTRFARLLAEYNATQMKMKQRLSQLE 43 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666677778889999999999999998888877665543
No 5
>3swf_A CGMP-gated cation channel alpha-1; coiled-coil, assembly domain, transport protein; 2.14A {Bos taurus}
Probab=81.54 E-value=11 Score=29.55 Aligned_cols=43 Identities=21% Similarity=0.322 Sum_probs=34.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018372 181 REELLMAKNEEMKQMQDKVLRSFAEMENVKDRTIREAENSKKF 223 (357)
Q Consensus 181 ~ee~L~e~~~EleelkDk~lR~~AEfEN~RKR~~rE~e~akk~ 223 (357)
+|+.+..++.-++-|+.++.|++|+|+....++.+-+..+..+
T Consensus 5 lEEKv~~LE~sld~LQTrfARLLaEy~ssQ~KLKqRit~LE~~ 47 (74)
T 3swf_A 5 LEEKVTRMESSVDLLQTRFARILAEYESMQQKLKQRLTKVEKF 47 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555666777788899999999999999998888877666554
No 6
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=71.71 E-value=58 Score=29.41 Aligned_cols=71 Identities=23% Similarity=0.286 Sum_probs=44.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------------HHHHHHHHHHhhHHHHHH
Q 018372 176 KLLKEREELLMAKNEEMKQMQDKVLRSFAEMENVKDRTIREAENSK----------------KFAIQNFAKALLDVADNL 239 (357)
Q Consensus 176 klv~e~ee~L~e~~~EleelkDk~lR~~AEfEN~RKR~~rE~e~ak----------------k~Aie~f~kdLLpVlDnL 239 (357)
.+.++++..|...++++.+|+.++.++.-|.+.+|.+...-..+.. ......-+++|=-.-|+|
T Consensus 42 ELE~ELE~eL~~~Ek~~~~L~~~~~~L~~E~e~~k~K~~~~~~e~~~~~~~Lq~el~~l~~~~~~l~~~ireLEq~NDdl 121 (189)
T 2v71_A 42 ELEAELEAQLVQAEQRNRDLQADNQRLKYEVEALKEKLEHQYAQSYKQVSVLEDDLSQTRAIKEQLHKYVRELEQANDDL 121 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH
Confidence 4556667777777777777777777777777777766654433311 222333455556666778
Q ss_pred HHhhhhh
Q 018372 240 GRASSVV 246 (357)
Q Consensus 240 ERAle~~ 246 (357)
+|+..+.
T Consensus 122 Er~~R~~ 128 (189)
T 2v71_A 122 ERAKRAT 128 (189)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 8776543
No 7
>3tso_C RAB11 family-interacting protein 2; RAS GTPase fold (RAB25), vesicle trafficking, endosome, PROT transport; HET: GNP; 1.80A {Homo sapiens} PDB: 2k6s_A
Probab=67.11 E-value=13 Score=29.26 Aligned_cols=34 Identities=21% Similarity=0.419 Sum_probs=26.8
Q ss_pred hccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018372 167 IELSRDDLVKLLKEREELLMAKNEEMKQMQDKVL 200 (357)
Q Consensus 167 ~~ls~deL~klv~e~ee~L~e~~~EleelkDk~l 200 (357)
..+|.+||.+++-.++..|...+.++.+|+|.+-
T Consensus 12 ~~ltreELi~l~lk~~~~l~~k~~~v~eLEdYID 45 (75)
T 3tso_C 12 RSLTYEEVLQELVKHKELLRRKDTHIRELEDYID 45 (75)
T ss_dssp CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5689999999988888888877777777766543
No 8
>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}
Probab=66.73 E-value=47 Score=27.72 Aligned_cols=40 Identities=28% Similarity=0.408 Sum_probs=28.7
Q ss_pred ccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018372 168 ELSRDDLVKLLKEREELLMAKNEEMKQMQDKVLRSFAEME 207 (357)
Q Consensus 168 ~ls~deL~klv~e~ee~L~e~~~EleelkDk~lR~~AEfE 207 (357)
.+..++|...+...++.|..++.++++++..+.+..++++
T Consensus 23 ~~ei~~L~~~L~~AEeaL~~Kq~~idelk~ei~q~~~~lE 62 (110)
T 2v4h_A 23 SMQLEDLRQQLQQAEEALVAKQELIDKLKEEAEQHKIVME 62 (110)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3457788877777788888888888888776666555443
No 9
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=64.73 E-value=24 Score=29.93 Aligned_cols=39 Identities=13% Similarity=0.171 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018372 176 KLLKEREELLMAKNEEMKQMQDKVLRSFAEMENVKDRTI 214 (357)
Q Consensus 176 klv~e~ee~L~e~~~EleelkDk~lR~~AEfEN~RKR~~ 214 (357)
+..+...+++++++.||..|+.++.-+.|+.+.+|+-.+
T Consensus 64 ~ekaq~q~~vqeLqgEI~~Lnq~Lq~a~ae~erlr~~~~ 102 (121)
T 3mq7_A 64 AEKAQGQKKVEELEGEITTLNHKLQDASAEVERLRRENQ 102 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhch
Confidence 333333445788888888888888888888888877654
No 10
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=63.81 E-value=26 Score=27.19 Aligned_cols=42 Identities=17% Similarity=0.190 Sum_probs=25.1
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018372 170 SRDDLVKLLKEREELLMAKNEEMKQMQDKVLRSFAEMENVKD 211 (357)
Q Consensus 170 s~deL~klv~e~ee~L~e~~~EleelkDk~lR~~AEfEN~RK 211 (357)
+..+|+..+.++.++|..++..++++..++...-+++.+++.
T Consensus 20 ti~eLq~~L~~K~eELr~kd~~I~eLEk~L~ekd~eI~~Lqs 61 (72)
T 3nmd_A 20 SLRDLQYALQEKIEELRQRDALIDELELELDQKDELIQMLQN 61 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 366777777666666666666666665555554454444443
No 11
>2l5g_B Putative uncharacterized protein NCOR2, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=63.23 E-value=15 Score=25.86 Aligned_cols=35 Identities=11% Similarity=0.292 Sum_probs=27.7
Q ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018372 169 LSRDDLVKLLKEREELLMAKNEEMKQMQDKVLRSF 203 (357)
Q Consensus 169 ls~deL~klv~e~ee~L~e~~~EleelkDk~lR~~ 203 (357)
++.+||.+.+.....++...++++.+++.++.-+.
T Consensus 2 ~tk~~l~qkI~kVdrEI~Kte~kI~~lqkKlkeLe 36 (42)
T 2l5g_B 2 LSKEELIQNMDRVDREITMVEQQISKLKKKQQQLE 36 (42)
T ss_dssp CSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57789988888888888888888888887765543
No 12
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}
Probab=62.93 E-value=66 Score=26.77 Aligned_cols=71 Identities=11% Similarity=0.169 Sum_probs=55.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHhhHHHHHHHHhhhhh
Q 018372 176 KLLKEREELLMAKNEEMKQMQDKVLRSFAEMENVKDRTIREAENSKK--FAIQNFAKALLDVADNLGRASSVV 246 (357)
Q Consensus 176 klv~e~ee~L~e~~~EleelkDk~lR~~AEfEN~RKR~~rE~e~akk--~Aie~f~kdLLpVlDnLERAle~~ 246 (357)
|...++......+.-+++.|+.+|.....+--...-.+++|+...+. .-...-+++|=--=|+|+|+-.+.
T Consensus 3 k~~rdL~~~~~~L~~E~e~~k~K~~~~~~e~~~~~~~Lq~El~~lr~~~~~l~~~iReLEq~NDDLER~~R~t 75 (111)
T 2v66_B 3 QRNRDLQADNQRLKYEVEALKEKLEHQYAQSYKQVSVLEDDLSQTRAIKEQLHKYVRELEQANDDLERAKRAT 75 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHH
Confidence 44556666777788899999999999999988888888888877663 345666788888899999987643
No 13
>3jsv_C NF-kappa-B essential modulator; ubiquitin, coiled-coil, cellular signaling, cytoplasm, isopeptide bond, nucleus, phosphoprotein, UBL conjugation; 2.70A {Mus musculus} PDB: 3f89_A 2zvo_B 2zvn_B
Probab=62.40 E-value=39 Score=27.50 Aligned_cols=39 Identities=28% Similarity=0.417 Sum_probs=25.8
Q ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018372 169 LSRDDLVKLLKEREELLMAKNEEMKQMQDKVLRSFAEME 207 (357)
Q Consensus 169 ls~deL~klv~e~ee~L~e~~~EleelkDk~lR~~AEfE 207 (357)
+..++|...+...++.|..++.++++|+....+..++.+
T Consensus 2 ~~~~~L~~~L~~aEeaL~~kq~~id~lke~~~q~~~~~E 40 (94)
T 3jsv_C 2 MQLEDLRQQLQQAEEALVAKQELIDKLKEEAEQHKIVME 40 (94)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 345677777777777777777777777776655554443
No 14
>3he5_A Synzip1; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}
Probab=59.86 E-value=40 Score=23.81 Aligned_cols=38 Identities=11% Similarity=0.025 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018372 177 LLKEREELLMAKNEEMKQMQDKVLRSFAEMENVKDRTI 214 (357)
Q Consensus 177 lv~e~ee~L~e~~~EleelkDk~lR~~AEfEN~RKR~~ 214 (357)
.++-++.+-+.+++..-.-+|-+.++..++.|+|+.++
T Consensus 11 evaslenenetlkkknlhkkdliaylekeianlrkkie 48 (49)
T 3he5_A 11 EVASLENENETLKKKNLHKKDLIAYLEKEIANLRKKIE 48 (49)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHhhcccHHHHHhcccHHHHHHHHHHHHHHHHHHhc
Confidence 33434433333444333445666677788888888753
No 15
>3etw_A Adhesin A; antiparallel helix-loop-helix, leucine chain, cell adhesin, cell adhesion; 2.00A {Fusobacterium nucleatum} PDB: 3ety_A 3etx_A 3etz_A 2gl2_A
Probab=59.50 E-value=21 Score=30.17 Aligned_cols=37 Identities=11% Similarity=0.135 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhh
Q 018372 195 MQDKVLRSFAEMENVKDRTIREAENSKKFAIQNFAKALLDVADNLGRAS 243 (357)
Q Consensus 195 lkDk~lR~~AEfEN~RKR~~rE~e~akk~Aie~f~kdLLpVlDnLERAl 243 (357)
+++.|..+.++++++++-+++++... =.|+|+|+++-
T Consensus 69 yk~~y~~l~k~Y~~~~keLd~~ik~q------------ekiIdnFE~ik 105 (119)
T 3etw_A 69 YKSQYQELASKYEDALKKLEAEMEQQ------------KAVISDFEKIQ 105 (119)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHH
Confidence 46677777777777777776665443 35788888753
No 16
>3efg_A Protein SLYX homolog; xanthomonas campestris PV. campestris, coiled-coil, structur genomics, PSI-2, protein structure initiative; 2.00A {Xanthomonas campestris PV}
Probab=53.17 E-value=40 Score=26.17 Aligned_cols=54 Identities=11% Similarity=0.049 Sum_probs=41.1
Q ss_pred ccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018372 168 ELSRDDLVKLLKEREELLMAKNEEMKQMQDKVLRSFAEMENVKDRTIREAENSK 221 (357)
Q Consensus 168 ~ls~deL~klv~e~ee~L~e~~~EleelkDk~lR~~AEfEN~RKR~~rE~e~ak 221 (357)
.+..+++...+.++|..+.-++.-+++|.+-+.+.+.+++.+++++..=.++.+
T Consensus 6 ~~~~~~le~Ri~~LE~klAfqE~tIeeLn~~v~~Qq~~Id~L~~ql~~L~~rl~ 59 (78)
T 3efg_A 6 SPRDQELEARLVELETRLSFQEQALTELSEALADARLTGARNAELIRHLLEDLG 59 (78)
T ss_dssp --CCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC-
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345567777888889888888888999999999988888888887765554444
No 17
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=48.16 E-value=1.5e+02 Score=30.94 Aligned_cols=15 Identities=27% Similarity=0.412 Sum_probs=7.3
Q ss_pred HHHHHHHHhhhhhhh
Q 018372 234 DVADNLGRASSVVKE 248 (357)
Q Consensus 234 pVlDnLERAle~~~e 248 (357)
.|.+.|++-++.++.
T Consensus 110 E~S~ELRRrIqyLKe 124 (562)
T 3ghg_A 110 RVSEDLRSRIEVLKR 124 (562)
T ss_dssp HTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 344455555555443
No 18
>4emc_A Monopolin complex subunit CSM1; RWD domain, kinetochore-binding, kinetoch replication-replication complex; 3.05A {Saccharomyces cerevisiae} PDB: 3n7n_A 3n4x_A
Probab=45.45 E-value=1.3e+02 Score=27.17 Aligned_cols=65 Identities=29% Similarity=0.288 Sum_probs=37.0
Q ss_pred hhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Q 018372 166 EIELSRDDLVKLLKEREELLMAKNEEMKQMQDKVLRSFAEMENVKDRTIREAENSKKFAIQNFAKALLDVA 236 (357)
Q Consensus 166 e~~ls~deL~klv~e~ee~L~e~~~EleelkDk~lR~~AEfEN~RKR~~rE~e~akk~Aie~f~kdLLpVl 236 (357)
.+++.+..|+-.+..+.++|+.+..+++.|+.++.-+.++..-+.-+..++.+.+ .+.+||+..+
T Consensus 17 ~ad~LV~~L~~En~~L~~ql~~k~~ei~~L~~ql~sl~~~~~~~~~~~~~~~e~i------~i~~DL~e~L 81 (190)
T 4emc_A 17 SADLLVANLVNENFVLSEKLDTKATEIKQLQKQIDSLNAQVKELKTQTSQQAENS------EVIKDLYEYL 81 (190)
T ss_dssp ---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHhh------hHHHHHHHHc
Confidence 3455666666666666667777777777777777666666654444444444333 3555555443
No 19
>2gzd_C RAB11 family-interacting protein 2; G protein folds, A-helical coiled coil, protein transport; HET: GTP; 2.44A {Homo sapiens} SCOP: h.1.31.1 PDB: 2gzh_B* 2k6s_A
Probab=45.22 E-value=8.2 Score=32.11 Aligned_cols=35 Identities=20% Similarity=0.410 Sum_probs=10.1
Q ss_pred hccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018372 167 IELSRDDLVKLLKEREELLMAKNEEMKQMQDKVLR 201 (357)
Q Consensus 167 ~~ls~deL~klv~e~ee~L~e~~~EleelkDk~lR 201 (357)
..++.+||.+++-++++++...+.++.+|+|.+-+
T Consensus 44 ~~lTrdELI~lllk~e~~l~~kd~~IrELEDYID~ 78 (107)
T 2gzd_C 44 RSLTYEEVLQELVKHKELLRRKDTHIRELEDYIDN 78 (107)
T ss_dssp -------------------CCHHHHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56899999999988888887777777666655433
No 20
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=45.16 E-value=37 Score=26.39 Aligned_cols=33 Identities=18% Similarity=0.321 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018372 178 LKEREELLMAKNEEMKQMQDKVLRSFAEMENVK 210 (357)
Q Consensus 178 v~e~ee~L~e~~~EleelkDk~lR~~AEfEN~R 210 (357)
+..+++.++++++++.+..+.+..++.+++.||
T Consensus 35 Lr~kd~~I~eLEk~L~ekd~eI~~LqseLDKfr 67 (72)
T 3nmd_A 35 LRQRDALIDELELELDQKDELIQMLQNELDKYR 67 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 344555666666666666666666666666664
No 21
>1d7m_A Cortexillin I; coiled-coil, coiled-coil trigger site, alpha helix, dimeriza contractIle protein; 2.70A {Dictyostelium discoideum} SCOP: h.1.10.1
Probab=41.54 E-value=99 Score=25.15 Aligned_cols=48 Identities=17% Similarity=0.225 Sum_probs=34.0
Q ss_pred hhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018372 166 EIELSRDDLVKLLKEREELLMAKNEEMKQMQDKVLRSFAEMENVKDRT 213 (357)
Q Consensus 166 e~~ls~deL~klv~e~ee~L~e~~~EleelkDk~lR~~AEfEN~RKR~ 213 (357)
...+|.++|.++..+++..+..++.+.+.....+.-++|-++..-|-+
T Consensus 15 ~EK~S~eeL~kQk~eL~~~l~~l~~e~~~R~~~i~el~akidd~Lk~l 62 (101)
T 1d7m_A 15 SEKVSREQLIKQKDQLNSLLASLESEGAEREKRLRELEAKLDETLKNL 62 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 356688888888888888888887777766666666666665544443
No 22
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=40.41 E-value=1.4e+02 Score=25.33 Aligned_cols=40 Identities=10% Similarity=0.156 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018372 176 KLLKEREELLMAKNEEMKQMQDKVLRSFAEMENVKDRTIR 215 (357)
Q Consensus 176 klv~e~ee~L~e~~~EleelkDk~lR~~AEfEN~RKR~~r 215 (357)
.....++..++++.+++.+|+..+..++-..++.++...+
T Consensus 75 ~~~~~L~~~l~~~~kE~~~lK~el~~~~~k~e~~~~e~~~ 114 (138)
T 3hnw_A 75 KMADSLSLDIENKDKEIYDLKHELIAAQIKAESSAKEIKE 114 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445556666666667777777777766666666655443
No 23
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=38.99 E-value=47 Score=24.03 Aligned_cols=24 Identities=33% Similarity=0.160 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 018372 173 DLVKLLKEREELLMAKNEEMKQMQ 196 (357)
Q Consensus 173 eL~klv~e~ee~L~e~~~Eleelk 196 (357)
.|+..++++...+..+.+++++++
T Consensus 23 aLk~E~~eLk~k~~~L~~~~~el~ 46 (53)
T 2yy0_A 23 LLRLELAEMKEKYEAIVEENKKLK 46 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333334444444444444444443
No 24
>2avr_X Adhesion A; antiparallel helix-loop-helix, leucine chain; HET: FLC; 1.90A {Fusobacterium nucleatum} PDB: 3etw_A 2gkq_A 2bc6_A 3etx_A 3ety_A 2gld_A 3etz_A 2gl2_A
Probab=37.68 E-value=71 Score=26.98 Aligned_cols=36 Identities=14% Similarity=0.185 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHh
Q 018372 195 MQDKVLRSFAEMENVKDRTIREAENSKKFAIQNFAKALLDVADNLGRA 242 (357)
Q Consensus 195 lkDk~lR~~AEfEN~RKR~~rE~e~akk~Aie~f~kdLLpVlDnLERA 242 (357)
+++.|.-+...|.++++-+.+++.... .|+|||+..
T Consensus 69 yK~eY~~L~KkYk~~~~~Ld~eI~~qe------------~iI~nFe~I 104 (119)
T 2avr_X 69 YKSQYQELASKYEDALKKLEAEMEQQK------------AVISDFEKI 104 (119)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHH
Confidence 467788888888888888887765544 467777754
No 25
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=35.97 E-value=56 Score=24.99 Aligned_cols=8 Identities=25% Similarity=0.376 Sum_probs=2.8
Q ss_pred HHHHHHHH
Q 018372 195 MQDKVLRS 202 (357)
Q Consensus 195 lkDk~lR~ 202 (357)
|+..+..+
T Consensus 55 Lr~~i~~L 62 (70)
T 1gd2_E 55 LRQKVRQL 62 (70)
T ss_dssp HTTHHHHH
T ss_pred HHHHHHHH
Confidence 33333333
No 26
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=35.33 E-value=2e+02 Score=24.37 Aligned_cols=18 Identities=17% Similarity=0.152 Sum_probs=6.4
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 018372 182 EELLMAKNEEMKQMQDKV 199 (357)
Q Consensus 182 ee~L~e~~~EleelkDk~ 199 (357)
+.++..++.++..++.++
T Consensus 88 ~kE~~~lK~el~~~~~k~ 105 (138)
T 3hnw_A 88 DKEIYDLKHELIAAQIKA 105 (138)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333333333333333333
No 27
>3htk_A Structural maintenance of chromosomes protein 5; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=34.66 E-value=1.2e+02 Score=21.42 Aligned_cols=48 Identities=19% Similarity=0.367 Sum_probs=32.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018372 173 DLVKLLKEREELLMAKNEEMKQMQDKVLRSFAEMENVKDRTIREAENS 220 (357)
Q Consensus 173 eL~klv~e~ee~L~e~~~EleelkDk~lR~~AEfEN~RKR~~rE~e~a 220 (357)
.+...+.+..+.......++..++..|.++.+++.+++..+.+-..++
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~l~~~~~~I~~~k~qi 56 (60)
T 3htk_A 9 TLENQVEELTEKCSLKTDEFLKAKEKINEIFEKLNTIRDEVIKKKNQN 56 (60)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555555666677777788888888888888887776554433
No 28
>3he4_B Synzip5; heterodimeric coiled-coil, de novo protein; 2.46A {Artificial gene}
Probab=34.49 E-value=1.2e+02 Score=21.18 Aligned_cols=34 Identities=29% Similarity=0.489 Sum_probs=21.0
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018372 170 SRDDLVKLLKEREELLMAKNEEMKQMQDKVLRSFAEME 207 (357)
Q Consensus 170 s~deL~klv~e~ee~L~e~~~EleelkDk~lR~~AEfE 207 (357)
+..+|+..++++++ ...+++.+++-+.-+.|+++
T Consensus 4 tvkelknyiqelee----rnaelknlkehlkfakaele 37 (46)
T 3he4_B 4 TVKELKNYIQELEE----RNAELKNLKEHLKFAKAELE 37 (46)
T ss_dssp CHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHH----HhHHHHhHHHHHHHHHHHHH
Confidence 45677777776554 34556666766666666654
No 29
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=34.38 E-value=2.3e+02 Score=25.66 Aligned_cols=69 Identities=14% Similarity=0.170 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHhhHHHHHHHH
Q 018372 173 DLVKLLKEREELLMAKNEEMKQMQDKVLRSFAEMENVKDRTIREAE---NSKKFAIQNFAKALLDVADNLGR 241 (357)
Q Consensus 173 eL~klv~e~ee~L~e~~~EleelkDk~lR~~AEfEN~RKR~~rE~e---~akk~Aie~f~kdLLpVlDnLER 241 (357)
++...+..+++.++.++.++++++..+....++++.....+..+.. ..+......+=.+||..|+.+.+
T Consensus 115 e~~e~ie~~~~~l~~~~~~l~~~~~~l~~~~~~~~~~~~e~~~e~~~l~~~r~~l~~~i~~~lL~~Yerir~ 186 (256)
T 3na7_A 115 NLQNEIKRKSEKQEDLKKEMLELEKLALELESLVENEVKNIKETQQIIFKKKEDLVEKTEPKIYSFYERIRR 186 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
No 30
>1gmj_A ATPase inhibitor; coiled-coil structure, P dependent oligomerization, ATP hydrolysis; 2.2A {Bos taurus} SCOP: h.4.8.1 PDB: 1ohh_H* 1hf9_A
Probab=33.94 E-value=1.4e+02 Score=23.75 Aligned_cols=13 Identities=31% Similarity=0.309 Sum_probs=4.7
Q ss_pred HHHHHHHHHHHHH
Q 018372 199 VLRSFAEMENVKD 211 (357)
Q Consensus 199 ~lR~~AEfEN~RK 211 (357)
+.++...+++.++
T Consensus 60 i~~le~~i~rhk~ 72 (84)
T 1gmj_A 60 IERLQKEIERHKQ 72 (84)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3333333333333
No 31
>3ukx_C Bimax2 peptide; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding, protein transport-IN complex; 2.20A {Mus musculus}
Probab=33.21 E-value=15 Score=23.32 Aligned_cols=19 Identities=42% Similarity=0.513 Sum_probs=9.3
Q ss_pred hhhhhccccccccCCCCcc
Q 018372 145 KRRRRVSKQTAFSDSDSDS 163 (357)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~~ 163 (357)
.||||+++.++.-+.|.|.
T Consensus 2 srrrrrrkrkrewdddddp 20 (28)
T 3ukx_C 2 SRRRRRRKRKREWDDDDDP 20 (28)
T ss_dssp ----CCCCCCCCCCCSSSC
T ss_pred chhHHHHHhhcccccCCCc
Confidence 3666677777766555443
No 32
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=32.75 E-value=1.5e+02 Score=29.18 Aligned_cols=15 Identities=13% Similarity=0.337 Sum_probs=8.8
Q ss_pred HHHHHHHHhCCCeee
Q 018372 278 KQLGEVFKKFGVEKF 292 (357)
Q Consensus 278 kqL~~vL~k~GVe~I 292 (357)
..+..+|..+.+.-|
T Consensus 131 ~lv~~~l~G~N~tif 145 (403)
T 4etp_A 131 QLVQSSLDGYNVAIF 145 (403)
T ss_dssp HHHHHHHTTCCEEEE
T ss_pred HHHHHHhCCcceEEE
Confidence 455666666665543
No 33
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=31.69 E-value=1.9e+02 Score=22.80 Aligned_cols=38 Identities=13% Similarity=0.192 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018372 174 LVKLLKEREELLMAKNEEMKQMQDKVLRSFAEMENVKD 211 (357)
Q Consensus 174 L~klv~e~ee~L~e~~~EleelkDk~lR~~AEfEN~RK 211 (357)
|...|...-+.+..++-++++|+.+...+..+.+..+.
T Consensus 11 LE~KIq~avdtI~lLqmEieELKekN~~L~~e~~e~~~ 48 (81)
T 2jee_A 11 LEAKVQQAIDTITLLQMEIEELKEKNNSLSQEVQNAQH 48 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34444444455566677888888888777777766544
No 34
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=31.59 E-value=83 Score=22.67 Aligned_cols=29 Identities=17% Similarity=0.164 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018372 186 MAKNEEMKQMQDKVLRSFAEMENVKDRTI 214 (357)
Q Consensus 186 ~e~~~EleelkDk~lR~~AEfEN~RKR~~ 214 (357)
+.++.++++|+.++..+.+..+-++.++.
T Consensus 22 eaLk~E~~eLk~k~~~L~~~~~el~~~l~ 50 (53)
T 2yy0_A 22 ELLRLELAEMKEKYEAIVEENKKLKAKLA 50 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44556667777777777777777766653
No 35
>3plt_A Sphingolipid long chain base-responsive protein L; eisosomes, LSP1, PIL1, BAR domain, plasma membrane, SELF-ASS phosphoprotein; 2.90A {Saccharomyces cerevisiae}
Probab=31.56 E-value=3.2e+02 Score=25.38 Aligned_cols=58 Identities=10% Similarity=0.137 Sum_probs=43.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhhhhh
Q 018372 190 EEMKQMQDKVLRSFAEMENVKDRTIREAENSKKFAIQNFAKALLDVADNLGRASSVVK 247 (357)
Q Consensus 190 ~EleelkDk~lR~~AEfEN~RKR~~rE~e~akk~Aie~f~kdLLpVlDnLERAle~~~ 247 (357)
.|+....-..+-+-|.+.|++|+.-||.-.++-.|+..++..+.=+...=.+.+..++
T Consensus 138 qELvraEae~lvaEAqL~n~kR~~lKEa~~~~f~Al~E~aEK~~ila~~gk~Ll~lld 195 (234)
T 3plt_A 138 QELVRAEAESLVAEAQLSNITREKLKAAYSYMFDSLRELSEKFALIAGYGKALLELLD 195 (234)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSC
T ss_pred HHHHHHHHHhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 3333333334556688999999999999999999999999998877766555555554
No 36
>1zxa_A CGMP-dependent protein kinase 1, alpha isozyme; parallel coiled coil dimer, transferase; NMR {Homo sapiens}
Probab=31.39 E-value=68 Score=24.49 Aligned_cols=26 Identities=19% Similarity=0.387 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018372 171 RDDLVKLLKEREELLMAKNEEMKQMQ 196 (357)
Q Consensus 171 ~deL~klv~e~ee~L~e~~~Eleelk 196 (357)
++++.+.+..+++.+.+++..+.+-.
T Consensus 13 ~e~~~~~i~~Kde~I~eLE~~L~~kd 38 (67)
T 1zxa_A 13 EEDFAKILMLKEERIKELEKRLSEKE 38 (67)
T ss_dssp ----CHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHccHHHHHHHHHHHHHHH
Confidence 34455555555555555544444333
No 37
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=30.16 E-value=1.4e+02 Score=25.27 Aligned_cols=33 Identities=18% Similarity=0.187 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018372 178 LKEREELLMAKNEEMKQMQDKVLRSFAEMENVK 210 (357)
Q Consensus 178 v~e~ee~L~e~~~EleelkDk~lR~~AEfEN~R 210 (357)
+++++.+|+.+..++.+...++.|++++.+-+.
T Consensus 73 vqeLqgEI~~Lnq~Lq~a~ae~erlr~~~~~~~ 105 (121)
T 3mq7_A 73 VEELEGEITTLNHKLQDASAEVERLRRENQVLS 105 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhh
Confidence 444444444444444444444444444444333
No 38
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=29.83 E-value=1.7e+02 Score=23.06 Aligned_cols=19 Identities=5% Similarity=0.045 Sum_probs=7.9
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 018372 195 MQDKVLRSFAEMENVKDRT 213 (357)
Q Consensus 195 lkDk~lR~~AEfEN~RKR~ 213 (357)
+.....+++.|..+...|+
T Consensus 53 L~~en~qLk~E~~~wq~Rl 71 (81)
T 2jee_A 53 LERENNHLKEQQNGWQERL 71 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444443
No 39
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=29.51 E-value=85 Score=30.40 Aligned_cols=24 Identities=13% Similarity=0.044 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 018372 172 DDLVKLLKEREELLMAKNEEMKQM 195 (357)
Q Consensus 172 deL~klv~e~ee~L~e~~~Eleel 195 (357)
..|.+.+.+.++.+..+++|...-
T Consensus 400 ~~~~~~~~~~~~~~~~~~~~~~~~ 423 (471)
T 3mq9_A 400 HLLQQELTEAQKGFQDVEAQAATA 423 (471)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHhhhc
Confidence 344555555555555555554443
No 40
>1j1d_B Troponin T, TNT; THIN filament, muscle regulation, Ca2+ binding protein, EF- hand, coiled-coil, contractIle protein; 2.61A {Homo sapiens} SCOP: h.1.25.1 PDB: 1j1e_B
Probab=27.58 E-value=2.5e+02 Score=22.94 Aligned_cols=48 Identities=21% Similarity=0.193 Sum_probs=30.3
Q ss_pred hhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018372 166 EIELSRDDLVKLLKEREELLMAKNEEMKQMQDKVLRSFAEMENVKDRT 213 (357)
Q Consensus 166 e~~ls~deL~klv~e~ee~L~e~~~EleelkDk~lR~~AEfEN~RKR~ 213 (357)
=+.++.++|..++.++=+.|..++.+-=+|..++.+.--|+.-++.|+
T Consensus 39 id~l~~~~L~e~~keLh~~I~~LEeEKYDlE~kv~kq~yEI~eL~~rV 86 (106)
T 1j1d_B 39 IDHLNEDQLREKAKELWQTIYNLEAEKFDLQEKFKQQKYEINVLRNRI 86 (106)
T ss_dssp HTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhhhHHHHHHHHHH
Confidence 355677887777777766666666665556666666555555555543
No 41
>1u2m_A Histone-like protein HLP-1; coiled coil, chaperone; 2.30A {Escherichia coli} SCOP: f.48.1.1 PDB: 1sg2_A
Probab=27.02 E-value=49 Score=27.21 Aligned_cols=50 Identities=2% Similarity=0.077 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHh
Q 018372 193 KQMQDKVLRSFAEMENVKDRTIREAENSKKFAIQNFAKALLDVADNLGRA 242 (357)
Q Consensus 193 eelkDk~lR~~AEfEN~RKR~~rE~e~akk~Aie~f~kdLLpVlDnLERA 242 (357)
......+.....+|..+++..+++...........+...+-+++..+...
T Consensus 63 ~~~~~el~~~~~~~q~~~~~~~~~l~~~~~~~~~~i~~~i~~ai~~vak~ 112 (143)
T 1u2m_A 63 TKLEKDVMAQRQTFAQKAQAFEQDRARRSNEERGKLVTRIQTAVKSVANS 112 (143)
T ss_dssp ------------------------CHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445566677788888888888888888777777777777777766554
No 42
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=26.69 E-value=2e+02 Score=22.48 Aligned_cols=39 Identities=13% Similarity=0.114 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018372 176 KLLKEREELLMAKNEEMKQMQDKVLRSFAEMENVKDRTI 214 (357)
Q Consensus 176 klv~e~ee~L~e~~~EleelkDk~lR~~AEfEN~RKR~~ 214 (357)
..+...+..+..+..++.++++++..+..+.+.++.++.
T Consensus 64 ~~i~~~~~~l~~l~~~i~~l~~~i~~l~~~~~~l~~~~~ 102 (112)
T 1l8d_A 64 ELLSKYHLDLNNSKNTLAKLIDRKSELERELRRIDMEIK 102 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444445555555555555554444444444444433
No 43
>2zvf_A Alanyl-tRNA synthetase; C-terminal, oligomerization domain, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase, nucleotide-binding; 3.20A {Archaeoglobus fulgidus}
Probab=25.54 E-value=84 Score=26.38 Aligned_cols=19 Identities=21% Similarity=0.356 Sum_probs=7.9
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 018372 195 MQDKVLRSFAEMENVKDRT 213 (357)
Q Consensus 195 lkDk~lR~~AEfEN~RKR~ 213 (357)
+.+++.+++.+...++|.+
T Consensus 30 l~~~v~~l~~e~k~l~ke~ 48 (171)
T 2zvf_A 30 LPKTVERFFEEWKDQRKEI 48 (171)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3344444444444333333
No 44
>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A
Probab=24.87 E-value=2.4e+02 Score=21.91 Aligned_cols=43 Identities=12% Similarity=0.195 Sum_probs=26.0
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018372 170 SRDDLVKLLKEREELLMAKNEEMKQMQDKVLRSFAEMENVKDRTIR 215 (357)
Q Consensus 170 s~deL~klv~e~ee~L~e~~~EleelkDk~lR~~AEfEN~RKR~~r 215 (357)
+.+++...+. +.++.++.+++.+..++.+....+.+++..+..
T Consensus 67 ~~~ea~~~L~---~~~e~ie~~i~~le~~~~~l~~~l~~lk~~l~~ 109 (117)
T 2zqm_A 67 TKDKAVAELK---EKIETLEVRLNALERQEKKLNEKLKELTAQIQS 109 (117)
T ss_dssp CHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455544433 334445566777777777777777777766554
No 45
>1t3j_A Mitofusin 1; coiled coil antiparallel, dimer, membrane protein; 2.50A {Mus musculus} SCOP: h.4.16.1
Probab=24.63 E-value=1.7e+02 Score=23.80 Aligned_cols=19 Identities=26% Similarity=0.394 Sum_probs=8.5
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 018372 192 MKQMQDKVLRSFAEMENVK 210 (357)
Q Consensus 192 leelkDk~lR~~AEfEN~R 210 (357)
++.|+++...+..++++|.
T Consensus 73 aK~LRnKA~~L~~eLe~F~ 91 (96)
T 1t3j_A 73 SKLLRNKAVQLESELENFS 91 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444443
No 46
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=24.61 E-value=1.5e+02 Score=28.98 Aligned_cols=13 Identities=15% Similarity=0.151 Sum_probs=6.3
Q ss_pred HHHHHHHHHHHHH
Q 018372 208 NVKDRTIREAENS 220 (357)
Q Consensus 208 N~RKR~~rE~e~a 220 (357)
..||++..+++++
T Consensus 45 ~~rr~l~n~~~el 57 (403)
T 4etp_A 45 TVRRTLHNELQEL 57 (403)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHc
Confidence 3455555544444
No 47
>2wt7_B Transcription factor MAFB; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 2wty_A* 1k1v_A
Probab=24.22 E-value=2.4e+02 Score=22.56 Aligned_cols=34 Identities=18% Similarity=0.130 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018372 181 REELLMAKNEEMKQMQDKVLRSFAEMENVKDRTI 214 (357)
Q Consensus 181 ~ee~L~e~~~EleelkDk~lR~~AEfEN~RKR~~ 214 (357)
+|.....+..+++.|+....+..-+.+.|+.+.+
T Consensus 53 LE~e~~~L~~e~~~L~~e~~~~~~e~d~~k~k~~ 86 (90)
T 2wt7_B 53 LENEKTQLIQQVEQLKQEVSRLARERDAYKVKSE 86 (90)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444555666666666666666666666553
No 48
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=23.91 E-value=2.9e+02 Score=22.40 Aligned_cols=50 Identities=16% Similarity=0.290 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHH
Q 018372 172 DDLVKLLKEREELLMAKNEEMKQMQDKVLR---SFAEMENVKDRTIREAENSK 221 (357)
Q Consensus 172 deL~klv~e~ee~L~e~~~EleelkDk~lR---~~AEfEN~RKR~~rE~e~ak 221 (357)
+.+...+..++..+...+.++..|.+.+.+ .+.+.+.-++++..|++++-
T Consensus 8 e~lre~l~~le~~~~~~~~e~~~L~~~l~eE~~~R~~aE~~~~~ie~ElEeLT 60 (97)
T 2eqb_B 8 NQLKEDYNTLKRELSDRDDEVKRLREDIAKENELRTKAEEEADKLNKEVEDLT 60 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444555555555555555555544432 22344455556666655543
No 49
>3t98_B Nucleoporin NUP58/NUP45; NUP62 complex, nuclear import, coiled-coil, HE hairpin, FG-repeat, NPC, nuclear tranport, TRA channel, karyopherin; 2.50A {Rattus norvegicus} PDB: 2osz_A
Probab=23.90 E-value=2.3e+02 Score=22.60 Aligned_cols=50 Identities=8% Similarity=0.149 Sum_probs=34.1
Q ss_pred hccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018372 167 IELSRDDLVKLLKEREELLMAKNEEMKQMQDKVLRSFAEMENVKDRTIRE 216 (357)
Q Consensus 167 ~~ls~deL~klv~e~ee~L~e~~~EleelkDk~lR~~AEfEN~RKR~~rE 216 (357)
..+++.+|..-+...-+..-.+-.++..+-+.+.+...+|-|+||+.-++
T Consensus 42 ~~~Tpq~L~~~l~~~h~~FiaLAa~l~~lH~~V~~~Ke~Yl~~rr~~~~d 91 (93)
T 3t98_B 42 SHITPQDLSMAMQKIYQTFVALAAQLQSIHENVKVLKEQYLSYRKMFLGD 91 (93)
T ss_dssp TTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC-
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 45677777766666555555666677777777777777777888776443
No 50
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=22.05 E-value=2.7e+02 Score=27.39 Aligned_cols=15 Identities=7% Similarity=0.264 Sum_probs=7.4
Q ss_pred HHHHHHHHhCCCeee
Q 018372 278 KQLGEVFKKFGVEKF 292 (357)
Q Consensus 278 kqL~~vL~k~GVe~I 292 (357)
..+..+|..+.+.-|
T Consensus 129 plv~~~l~G~n~tif 143 (412)
T 3u06_A 129 PLIQSALDGYNICIF 143 (412)
T ss_dssp HHHHHHHTTCCEEEE
T ss_pred HHHHHHHCCCceEEE
Confidence 344555555554443
No 51
>1ytz_T Troponin T; muscle, THIN filament, actin binding, calcium, contractIle protein; HET: DR6; 3.00A {Gallus gallus} SCOP: h.1.25.1 PDB: 1yv0_T 2w49_1 2w4u_1
Probab=21.62 E-value=2.6e+02 Score=22.84 Aligned_cols=46 Identities=22% Similarity=0.246 Sum_probs=30.0
Q ss_pred hccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018372 167 IELSRDDLVKLLKEREELLMAKNEEMKQMQDKVLRSFAEMENVKDR 212 (357)
Q Consensus 167 ~~ls~deL~klv~e~ee~L~e~~~EleelkDk~lR~~AEfEN~RKR 212 (357)
+.++.++|..++.++=+.|..++++-=++..++.+.--|+.-++.|
T Consensus 40 d~l~~~~L~e~~keLh~~I~~lEeEKYDlE~kv~kq~yEI~eL~~r 85 (107)
T 1ytz_T 40 DHLNEDKLRDKAKELWDWLYQLQTEKYDFAEQIKRKKYEIVTLRNR 85 (107)
T ss_dssp SSSCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhhHHHHHHHH
Confidence 4567788887777777777666666556666666655555555544
No 52
>2xv5_A Lamin-A/C; structural protein, intermediate filaments, nuclear membrane LEFT-handed coiled coil, right-handed coiled coil; HET: MSE; 2.40A {Homo sapiens}
Probab=21.21 E-value=2.8e+02 Score=21.17 Aligned_cols=14 Identities=14% Similarity=0.022 Sum_probs=7.8
Q ss_pred HHHHHHHHHHHHHH
Q 018372 208 NVKDRTIREAENSK 221 (357)
Q Consensus 208 N~RKR~~rE~e~ak 221 (357)
|+|-++..|+..++
T Consensus 40 niKl~Le~EIatYR 53 (74)
T 2xv5_A 40 DIKLALDMEIHAYR 53 (74)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 55556665555444
No 53
>2wuj_A Septum site-determining protein diviva; bacterial cell division, septation, cell cycle, sporulation; 1.40A {Bacillus subtilis} PDB: 2wuk_A
Probab=20.31 E-value=1.3e+02 Score=21.75 Aligned_cols=35 Identities=11% Similarity=0.079 Sum_probs=22.8
Q ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018372 169 LSRDDLVKLLKEREELLMAKNEEMKQMQDKVLRSF 203 (357)
Q Consensus 169 ls~deL~klv~e~ee~L~e~~~EleelkDk~lR~~ 203 (357)
-..+|+-.-+.+..+.++.+.+++.+|++++.++.
T Consensus 20 Y~~~EVD~FLd~v~~~~~~l~~e~~~L~~~~~~l~ 54 (57)
T 2wuj_A 20 YDEDEVNEFLAQVRKDYEIVLRKKTELEAKVNELD 54 (57)
T ss_dssp EEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566666666666677777777777777776654
No 54
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=20.09 E-value=3.8e+02 Score=26.39 Aligned_cols=26 Identities=15% Similarity=0.183 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018372 188 KNEEMKQMQDKVLRSFAEMENVKDRT 213 (357)
Q Consensus 188 ~~~EleelkDk~lR~~AEfEN~RKR~ 213 (357)
+++++++++.+..+++++.+.++..+
T Consensus 15 ~~~~~~~l~~~~~~~~~~~~~~~~~l 40 (412)
T 3u06_A 15 LRQRTEELLRCNEQQAAELETCKEQL 40 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333444444444444444444333
Done!