Query 018373
Match_columns 357
No_of_seqs 120 out of 1663
Neff 9.8
Searched_HMMs 46136
Date Fri Mar 29 08:28:32 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018373.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/018373hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0253 Synaptic vesicle trans 100.0 7.8E-50 1.7E-54 349.4 25.4 337 1-348 126-527 (528)
2 KOG0569 Permease of the major 100.0 1.8E-40 3.9E-45 309.9 29.4 300 19-356 151-470 (485)
3 TIGR01299 synapt_SV2 synaptic 100.0 1E-36 2.2E-41 301.6 32.5 342 2-348 216-741 (742)
4 TIGR00887 2A0109 phosphate:H+ 100.0 1.1E-34 2.5E-39 280.9 27.6 301 19-351 150-499 (502)
5 KOG0254 Predicted transporter 100.0 5.5E-32 1.2E-36 262.5 29.6 306 19-355 177-498 (513)
6 TIGR00898 2A0119 cation transp 100.0 7.9E-32 1.7E-36 261.4 29.8 288 19-351 215-505 (505)
7 PF00083 Sugar_tr: Sugar (and 100.0 2.5E-38 5.5E-43 302.5 -18.3 299 19-354 137-450 (451)
8 KOG0255 Synaptic vesicle trans 100.0 2.7E-30 5.8E-35 251.5 30.9 316 2-356 132-508 (521)
9 KOG0252 Inorganic phosphate tr 100.0 1.3E-30 2.8E-35 235.5 8.9 304 19-355 179-512 (538)
10 PRK10077 xylE D-xylose transpo 100.0 1.5E-26 3.3E-31 222.9 30.2 298 19-356 155-473 (479)
11 PRK10642 proline/glycine betai 100.0 3.8E-26 8.2E-31 220.6 27.6 274 19-349 153-438 (490)
12 TIGR00879 SP MFS transporter, 99.9 2.8E-24 6.1E-29 206.0 27.3 304 19-350 162-480 (481)
13 PRK09952 shikimate transporter 99.9 8.9E-23 1.9E-27 194.5 26.9 262 19-344 160-436 (438)
14 PRK10406 alpha-ketoglutarate t 99.9 7.3E-22 1.6E-26 187.9 27.2 258 19-348 159-430 (432)
15 TIGR00903 2A0129 major facilit 99.9 1.7E-20 3.6E-25 174.4 24.7 246 19-338 113-363 (368)
16 PRK12307 putative sialic acid 99.9 1.9E-19 4.1E-24 170.9 26.0 271 19-345 141-414 (426)
17 PRK11551 putative 3-hydroxyphe 99.9 8.5E-19 1.8E-23 165.4 27.8 256 19-339 138-395 (406)
18 PRK15075 citrate-proton sympor 99.8 1.9E-18 4.1E-23 164.6 27.4 144 207-350 281-429 (434)
19 TIGR00895 2A0115 benzoate tran 99.8 4.5E-18 9.8E-23 159.3 24.2 256 19-311 140-396 (398)
20 TIGR00891 2A0112 putative sial 99.8 4.2E-18 9.2E-23 160.1 23.8 255 19-317 135-392 (405)
21 PRK10489 enterobactin exporter 99.8 1.1E-17 2.4E-22 158.5 25.5 149 208-356 267-415 (417)
22 PRK11663 regulatory protein Uh 99.8 8.5E-18 1.9E-22 160.1 24.4 279 19-348 146-432 (434)
23 TIGR00883 2A0106 metabolite-pr 99.8 7E-17 1.5E-21 150.9 23.2 111 207-317 262-377 (394)
24 TIGR02332 HpaX 4-hydroxyphenyl 99.8 1.3E-16 2.8E-21 150.9 24.1 256 19-317 131-397 (412)
25 PRK03893 putative sialic acid 99.8 1.2E-16 2.7E-21 154.7 24.0 136 207-342 318-456 (496)
26 PRK11273 glpT sn-glycerol-3-ph 99.8 7.3E-16 1.6E-20 147.6 26.5 144 208-353 297-447 (452)
27 TIGR00893 2A0114 d-galactonate 99.7 4E-16 8.6E-21 145.6 23.0 131 207-337 258-396 (399)
28 COG2271 UhpC Sugar phosphate p 99.7 1.4E-16 3.1E-21 144.0 15.7 270 19-339 152-433 (448)
29 TIGR00890 2A0111 Oxalate/Forma 99.7 1.4E-15 3.1E-20 141.2 23.1 126 207-332 247-374 (377)
30 PRK09556 uhpT sugar phosphate 99.7 3.9E-16 8.4E-21 150.1 19.7 149 207-355 301-465 (467)
31 TIGR00899 2A0120 sugar efflux 99.7 8.4E-15 1.8E-19 136.4 26.3 126 210-336 245-370 (375)
32 PRK05122 major facilitator sup 99.7 1.9E-14 4.2E-19 135.5 27.1 142 208-350 257-398 (399)
33 PRK03545 putative arabinose tr 99.7 1.6E-14 3.5E-19 135.7 26.4 142 207-350 248-389 (390)
34 TIGR00712 glpT glycerol-3-phos 99.7 3.2E-15 6.9E-20 142.6 20.8 139 207-345 294-438 (438)
35 PRK11010 ampG muropeptide tran 99.7 3.1E-14 6.8E-19 137.5 27.5 258 19-343 142-405 (491)
36 PRK09705 cynX putative cyanate 99.7 2.6E-14 5.6E-19 134.4 25.2 142 207-350 247-391 (393)
37 PRK12382 putative transporter; 99.6 9.3E-14 2E-18 130.5 25.3 132 208-339 257-388 (392)
38 cd06174 MFS The Major Facilita 99.6 5.7E-14 1.2E-18 129.0 23.3 133 206-338 217-350 (352)
39 PRK15011 sugar efflux transpor 99.6 1.1E-13 2.5E-18 130.1 24.8 132 210-343 262-393 (393)
40 TIGR00900 2A0121 H+ Antiporter 99.6 1.3E-13 2.8E-18 127.5 24.2 109 207-315 254-363 (365)
41 PLN00028 nitrate transmembrane 99.6 6.5E-14 1.4E-18 134.9 22.9 130 207-339 295-432 (476)
42 PRK03699 putative transporter; 99.6 4.9E-14 1.1E-18 132.6 21.5 135 209-345 250-384 (394)
43 TIGR00881 2A0104 phosphoglycer 99.6 7.7E-14 1.7E-18 129.6 17.1 111 207-317 259-374 (379)
44 TIGR00901 2A0125 AmpG-related 99.6 5E-13 1.1E-17 123.9 22.4 88 211-298 256-354 (356)
45 PRK11902 ampG muropeptide tran 99.6 3.6E-12 7.9E-17 120.2 28.0 125 211-339 257-389 (402)
46 TIGR00894 2A0114euk Na(+)-depe 99.6 6.2E-13 1.3E-17 127.9 22.8 267 19-338 166-448 (465)
47 PRK09874 drug efflux system pr 99.6 1.1E-12 2.3E-17 123.8 23.4 131 210-340 268-398 (408)
48 TIGR00792 gph sugar (Glycoside 99.6 3E-12 6.6E-17 121.9 25.9 109 208-316 265-381 (437)
49 PRK09528 lacY galactoside perm 99.6 8.1E-13 1.7E-17 125.4 21.8 135 208-342 270-405 (420)
50 PRK08633 2-acyl-glycerophospho 99.5 1.8E-12 3.9E-17 138.0 25.7 137 207-343 276-413 (1146)
51 TIGR00897 2A0118 polyol permea 99.5 7.9E-12 1.7E-16 117.9 27.1 129 208-338 265-399 (402)
52 TIGR00889 2A0110 nucleoside tr 99.5 4.1E-12 8.8E-17 120.4 24.6 141 207-347 258-409 (418)
53 TIGR00710 efflux_Bcr_CflA drug 99.5 1.5E-11 3.1E-16 115.0 27.7 103 207-310 249-356 (385)
54 COG2814 AraJ Arabinose efflux 99.5 9.5E-12 2.1E-16 114.0 25.2 248 19-339 136-385 (394)
55 PRK10473 multidrug efflux syst 99.5 1.5E-11 3.1E-16 115.6 27.4 106 207-317 246-351 (392)
56 PRK10504 putative transporter; 99.5 2.3E-11 4.9E-16 117.2 27.9 109 208-316 305-416 (471)
57 PRK11043 putative transporter; 99.5 3.4E-11 7.3E-16 113.5 27.6 106 209-315 247-357 (401)
58 TIGR00711 efflux_EmrB drug res 99.5 1.3E-11 2.9E-16 119.0 24.5 108 207-314 298-409 (485)
59 PRK10091 MFS transport protein 99.5 3E-11 6.5E-16 113.2 25.9 130 207-338 242-374 (382)
60 PRK11102 bicyclomycin/multidru 99.5 3E-11 6.6E-16 112.7 25.9 101 207-308 237-342 (377)
61 PRK11195 lysophospholipid tran 99.5 2.8E-11 6.1E-16 113.8 25.8 131 207-339 248-379 (393)
62 PRK10213 nepI ribonucleoside t 99.5 5.3E-11 1.2E-15 112.0 27.5 56 19-74 143-199 (394)
63 PRK15402 multidrug efflux syst 99.5 6.9E-11 1.5E-15 111.6 27.8 107 210-317 261-372 (406)
64 TIGR00882 2A0105 oligosacchari 99.5 1.5E-11 3.3E-16 115.7 22.9 131 208-338 262-393 (396)
65 PF07690 MFS_1: Major Facilita 99.5 1.9E-12 4.1E-17 119.2 15.6 100 207-306 250-352 (352)
66 TIGR00902 2A0127 phenyl propri 99.5 8.9E-11 1.9E-15 110.0 26.7 125 207-333 247-372 (382)
67 TIGR02718 sider_RhtX_FptX side 99.4 1.6E-10 3.4E-15 108.6 26.1 122 211-332 255-383 (390)
68 PRK15034 nitrate/nitrite trans 99.4 1.3E-10 2.7E-15 110.1 23.3 134 207-340 293-454 (462)
69 PRK06814 acylglycerophosphoeth 99.4 3.6E-11 7.9E-16 127.9 22.1 233 19-314 143-395 (1140)
70 TIGR00892 2A0113 monocarboxyla 99.4 3.2E-11 7E-16 115.6 19.6 128 207-334 283-415 (455)
71 PRK03633 putative MFS family t 99.4 3.3E-10 7.1E-15 106.1 25.9 123 208-333 243-365 (381)
72 PRK11128 putative 3-phenylprop 99.4 5.5E-10 1.2E-14 104.6 26.3 122 208-331 248-370 (382)
73 PRK14995 methyl viologen resis 99.4 6.5E-10 1.4E-14 107.8 26.6 108 207-314 302-412 (495)
74 PRK10054 putative transporter; 99.4 2.9E-10 6.2E-15 107.1 23.1 127 211-338 255-382 (395)
75 PRK11652 emrD multidrug resist 99.3 9.9E-10 2.1E-14 103.3 26.4 43 271-314 317-359 (394)
76 TIGR00885 fucP L-fucose:H+ sym 99.3 8.6E-10 1.9E-14 104.3 25.8 102 211-315 280-381 (410)
77 KOG2533 Permease of the major 99.3 2.9E-11 6.3E-16 115.3 15.4 252 9-310 157-425 (495)
78 PRK11646 multidrug resistance 99.3 8E-10 1.7E-14 104.2 25.0 100 217-316 260-360 (400)
79 PRK10133 L-fucose transporter; 99.3 9.7E-10 2.1E-14 104.8 25.8 115 207-324 302-417 (438)
80 TIGR00896 CynX cyanate transpo 99.3 3.6E-10 7.8E-15 104.7 21.7 110 207-317 239-350 (355)
81 TIGR00886 2A0108 nitrite extru 99.3 4.3E-11 9.3E-16 111.1 14.9 93 208-301 269-365 (366)
82 PRK15403 multidrug efflux syst 99.3 2.9E-09 6.2E-14 100.9 26.9 57 19-75 139-196 (413)
83 TIGR00880 2_A_01_02 Multidrug 99.3 9.9E-11 2.1E-15 92.6 14.4 134 210-343 8-141 (141)
84 PF11700 ATG22: Vacuole efflux 99.2 1.5E-08 3.3E-13 97.0 28.8 145 202-347 319-474 (477)
85 TIGR01299 synapt_SV2 synaptic 99.2 9.6E-10 2.1E-14 110.1 21.3 137 207-344 209-358 (742)
86 PLN00028 nitrate transmembrane 99.2 9.1E-10 2E-14 106.2 20.5 183 149-343 31-222 (476)
87 TIGR00710 efflux_Bcr_CflA drug 99.2 6.4E-10 1.4E-14 103.8 18.6 141 207-347 47-187 (385)
88 TIGR02332 HpaX 4-hydroxyphenyl 99.2 1.3E-09 2.9E-14 103.1 20.6 138 208-345 51-194 (412)
89 PF05977 MFS_3: Transmembrane 99.2 5.2E-09 1.1E-13 101.3 24.7 139 207-345 261-400 (524)
90 TIGR00895 2A0115 benzoate tran 99.2 4.7E-10 1E-14 105.0 17.1 138 208-345 60-197 (398)
91 PRK10213 nepI ribonucleoside t 99.2 2.3E-09 5.1E-14 100.8 20.2 138 208-345 63-200 (394)
92 PRK11551 putative 3-hydroxyphe 99.2 1.3E-09 2.8E-14 102.8 18.5 138 207-344 57-194 (406)
93 COG2223 NarK Nitrate/nitrite t 99.2 3.3E-09 7.1E-14 96.8 19.4 128 211-339 265-400 (417)
94 PRK10473 multidrug efflux syst 99.2 2E-09 4.2E-14 101.2 18.8 140 207-346 45-184 (392)
95 PRK15402 multidrug efflux syst 99.2 2.5E-09 5.4E-14 101.0 19.0 139 207-345 55-193 (406)
96 PRK09669 putative symporter Ya 99.2 3.7E-08 8.1E-13 94.2 27.1 146 210-357 274-444 (444)
97 PRK03893 putative sialic acid 99.2 3E-09 6.5E-14 103.1 19.6 136 208-344 63-198 (496)
98 PRK10504 putative transporter; 99.2 3.5E-09 7.7E-14 102.0 19.5 136 209-344 54-189 (471)
99 PRK15462 dipeptide/tripeptide 99.1 2.5E-09 5.5E-14 102.3 18.0 166 156-332 11-181 (493)
100 PF03825 Nuc_H_symport: Nucleo 99.1 4.3E-08 9.4E-13 92.0 25.9 137 207-343 250-398 (400)
101 PRK15403 multidrug efflux syst 99.1 3.8E-09 8.2E-14 100.1 18.6 138 208-345 59-196 (413)
102 TIGR00887 2A0109 phosphate:H+ 99.1 8.7E-09 1.9E-13 100.2 21.5 105 207-311 63-173 (502)
103 PRK11663 regulatory protein Uh 99.1 5.5E-09 1.2E-13 99.6 19.6 136 208-343 66-201 (434)
104 PRK10054 putative transporter; 99.1 4.3E-09 9.2E-14 99.1 18.3 136 208-344 51-186 (395)
105 TIGR00711 efflux_EmrB drug res 99.1 2.4E-09 5.2E-14 103.4 16.7 139 207-345 44-182 (485)
106 PRK11273 glpT sn-glycerol-3-ph 99.1 6.5E-09 1.4E-13 99.7 19.4 138 207-344 70-212 (452)
107 KOG2532 Permease of the major 99.1 9.6E-09 2.1E-13 97.9 20.2 262 19-334 163-441 (466)
108 TIGR00893 2A0114 d-galactonate 99.1 2.4E-09 5.2E-14 99.8 15.9 139 207-345 36-174 (399)
109 PF07690 MFS_1: Major Facilita 99.1 6.2E-09 1.3E-13 95.8 18.4 136 207-342 39-174 (352)
110 TIGR00891 2A0112 putative sial 99.1 1.1E-08 2.3E-13 96.2 20.3 138 207-345 54-193 (405)
111 PRK12307 putative sialic acid 99.1 7.4E-09 1.6E-13 98.3 19.3 137 207-344 60-196 (426)
112 PRK03545 putative arabinose tr 99.1 9.6E-09 2.1E-13 96.5 19.4 135 210-344 54-188 (390)
113 PRK03699 putative transporter; 99.1 1.4E-08 3.1E-13 95.5 20.2 128 208-335 50-178 (394)
114 TIGR00788 fbt folate/biopterin 99.1 7.2E-09 1.5E-13 99.7 18.0 111 207-317 295-415 (468)
115 PRK11102 bicyclomycin/multidru 99.1 4.5E-09 9.8E-14 98.0 15.9 139 207-345 33-171 (377)
116 PRK10429 melibiose:sodium symp 99.1 1E-07 2.2E-12 92.0 25.0 107 208-314 274-392 (473)
117 TIGR00900 2A0121 H+ Antiporter 99.0 2.6E-08 5.5E-13 92.1 19.4 137 207-343 41-183 (365)
118 PRK10091 MFS transport protein 99.0 1.7E-08 3.8E-13 94.5 18.3 139 207-345 45-183 (382)
119 PRK14995 methyl viologen resis 99.0 3E-08 6.5E-13 96.2 20.0 137 210-346 51-188 (495)
120 PRK11652 emrD multidrug resist 99.0 3.4E-08 7.4E-13 92.8 19.4 139 207-345 50-188 (394)
121 TIGR01272 gluP glucose/galacto 99.0 3.4E-07 7.3E-12 83.3 25.1 114 207-323 185-298 (310)
122 PF01306 LacY_symp: LacY proto 99.0 2.1E-07 4.5E-12 86.5 23.9 139 208-346 267-406 (412)
123 TIGR00881 2A0104 phosphoglycer 99.0 3.4E-09 7.3E-14 98.4 11.4 138 207-344 37-175 (379)
124 TIGR00712 glpT glycerol-3-phos 99.0 2E-08 4.4E-13 95.8 16.9 138 207-344 68-210 (438)
125 KOG2504 Monocarboxylate transp 99.0 7.7E-09 1.7E-13 99.7 13.5 136 205-341 338-476 (509)
126 TIGR00886 2A0108 nitrite extru 99.0 4.7E-08 1E-12 90.7 18.4 107 207-314 44-151 (366)
127 PRK09874 drug efflux system pr 99.0 7.8E-08 1.7E-12 90.6 19.7 135 208-343 62-196 (408)
128 TIGR00903 2A0129 major facilit 99.0 3.7E-08 8E-13 91.8 17.1 135 209-344 35-169 (368)
129 PRK10642 proline/glycine betai 99.0 1.2E-07 2.5E-12 92.0 21.2 135 209-344 66-216 (490)
130 PRK11646 multidrug resistance 99.0 7.6E-08 1.7E-12 90.8 19.2 133 210-343 56-188 (400)
131 TIGR01301 GPH_sucrose GPH fami 98.9 1.3E-06 2.9E-11 83.4 27.1 138 208-345 313-476 (477)
132 PRK11043 putative transporter; 98.9 1.3E-07 2.9E-12 89.0 20.0 137 207-343 48-184 (401)
133 COG2270 Permeases of the major 98.9 3.5E-07 7.6E-12 83.8 21.4 148 200-348 288-436 (438)
134 PRK15034 nitrate/nitrite trans 98.9 2.9E-07 6.2E-12 87.4 21.9 148 207-355 77-249 (462)
135 PRK15075 citrate-proton sympor 98.9 1.1E-07 2.4E-12 90.7 19.4 98 213-310 69-174 (434)
136 PF13347 MFS_2: MFS/sugar tran 98.9 1.9E-07 4.2E-12 88.8 20.9 108 208-315 268-384 (428)
137 TIGR00924 yjdL_sub1_fam amino 98.9 7.4E-08 1.6E-12 92.9 18.1 168 157-332 13-184 (475)
138 cd06174 MFS The Major Facilita 98.9 6.1E-08 1.3E-12 88.8 16.8 130 207-336 41-170 (352)
139 TIGR00898 2A0119 cation transp 98.9 4.3E-08 9.2E-13 95.3 16.2 134 207-344 134-267 (505)
140 TIGR00890 2A0111 Oxalate/Forma 98.9 4.2E-08 9.1E-13 91.0 14.8 134 207-341 45-178 (377)
141 TIGR00879 SP MFS transporter, 98.9 3.1E-08 6.8E-13 94.8 14.3 137 207-344 78-220 (481)
142 KOG0255 Synaptic vesicle trans 98.9 3.5E-08 7.7E-13 96.4 14.8 135 207-345 125-259 (521)
143 PRK10207 dipeptide/tripeptide 98.9 1.2E-07 2.6E-12 91.6 18.1 163 152-324 12-178 (489)
144 PRK11462 putative transporter; 98.9 2.9E-06 6.2E-11 81.6 27.4 107 208-314 271-386 (460)
145 TIGR00894 2A0114euk Na(+)-depe 98.9 1.1E-07 2.4E-12 91.5 17.5 136 208-343 84-222 (465)
146 PRK09584 tppB putative tripept 98.9 1.6E-07 3.5E-12 91.1 18.3 162 156-327 23-188 (500)
147 KOG1330 Sugar transporter/spin 98.9 2.6E-09 5.6E-14 98.4 5.5 109 207-315 290-412 (493)
148 TIGR00924 yjdL_sub1_fam amino 98.9 2.1E-06 4.5E-11 82.9 25.9 72 270-341 398-469 (475)
149 PRK10077 xylE D-xylose transpo 98.8 2E-07 4.3E-12 90.0 18.1 137 207-344 62-218 (479)
150 PRK10406 alpha-ketoglutarate t 98.8 5.1E-07 1.1E-11 86.1 20.5 137 208-345 71-223 (432)
151 COG0738 FucP Fucose permease [ 98.8 2.5E-06 5.4E-11 77.8 23.5 121 207-330 279-399 (422)
152 PRK11195 lysophospholipid tran 98.8 4.4E-07 9.5E-12 85.4 19.1 132 208-344 46-177 (393)
153 COG2271 UhpC Sugar phosphate p 98.8 7.9E-08 1.7E-12 87.9 12.6 138 210-347 74-216 (448)
154 PRK09584 tppB putative tripept 98.8 1.4E-06 2.9E-11 84.7 21.2 43 21-63 151-193 (500)
155 COG2814 AraJ Arabinose efflux 98.8 1.2E-06 2.6E-11 80.7 19.5 135 207-341 55-189 (394)
156 TIGR00892 2A0113 monocarboxyla 98.8 4.2E-07 9.1E-12 87.3 17.2 131 210-341 64-195 (455)
157 PRK09556 uhpT sugar phosphate 98.8 1.7E-07 3.6E-12 90.4 14.3 132 209-340 73-212 (467)
158 PRK10489 enterobactin exporter 98.7 5.3E-07 1.1E-11 85.5 17.3 136 207-343 59-199 (417)
159 COG2223 NarK Nitrate/nitrite t 98.7 8.1E-07 1.8E-11 81.4 17.5 140 201-341 50-194 (417)
160 PRK09848 glucuronide transport 98.7 6.4E-06 1.4E-10 78.9 24.6 105 211-315 275-388 (448)
161 PRK05122 major facilitator sup 98.7 7.3E-07 1.6E-11 83.9 17.8 121 207-327 58-186 (399)
162 COG2807 CynX Cyanate permease 98.7 7.3E-06 1.6E-10 73.8 22.3 259 6-339 119-384 (395)
163 PRK03633 putative MFS family t 98.7 1.9E-06 4.1E-11 80.7 19.5 108 207-314 48-155 (381)
164 PF06609 TRI12: Fungal trichot 98.7 4.7E-06 1E-10 81.2 22.4 105 209-313 358-465 (599)
165 TIGR00897 2A0118 polyol permea 98.7 7.9E-07 1.7E-11 83.9 16.7 111 207-317 55-170 (402)
166 COG2211 MelB Na+/melibiose sym 98.7 1.3E-05 2.7E-10 75.7 24.1 111 204-314 276-395 (467)
167 PRK09705 cynX putative cyanate 98.7 1.3E-06 2.9E-11 82.2 17.8 123 208-331 52-175 (393)
168 TIGR00899 2A0120 sugar efflux 98.7 1.6E-06 3.4E-11 80.6 18.1 137 209-345 42-181 (375)
169 PRK09952 shikimate transporter 98.7 6.8E-07 1.5E-11 85.4 15.9 135 209-344 73-223 (438)
170 PF05977 MFS_3: Transmembrane 98.7 2.8E-06 6.2E-11 82.4 19.4 133 209-341 54-191 (524)
171 PF06609 TRI12: Fungal trichot 98.7 1.3E-06 2.8E-11 85.1 16.9 124 209-334 87-211 (599)
172 TIGR00885 fucP L-fucose:H+ sym 98.6 3.6E-06 7.8E-11 79.7 19.4 107 207-313 45-154 (410)
173 PRK10207 dipeptide/tripeptide 98.6 1E-05 2.2E-10 78.4 22.2 97 213-309 322-435 (489)
174 PRK11010 ampG muropeptide tran 98.6 3.6E-06 7.7E-11 81.6 19.1 129 215-344 60-198 (491)
175 PRK12382 putative transporter; 98.6 4E-06 8.6E-11 78.7 19.0 111 208-318 59-177 (392)
176 PRK08633 2-acyl-glycerophospho 98.6 2.8E-06 6E-11 90.9 19.9 108 208-315 55-165 (1146)
177 PTZ00207 hypothetical protein; 98.6 4.6E-06 1E-10 81.6 19.2 136 207-345 398-557 (591)
178 PTZ00207 hypothetical protein; 98.6 7.7E-06 1.7E-10 80.1 20.6 122 216-339 77-204 (591)
179 PRK06814 acylglycerophosphoeth 98.6 4.7E-06 1E-10 89.1 20.6 135 209-344 61-198 (1140)
180 KOG0254 Predicted transporter 98.6 1.4E-06 3E-11 85.0 14.8 137 207-345 96-234 (513)
181 KOG0569 Permease of the major 98.6 2.9E-06 6.2E-11 80.6 16.2 137 208-345 68-209 (485)
182 PRK10133 L-fucose transporter; 98.5 1.4E-05 3.1E-10 76.3 20.1 151 151-312 23-176 (438)
183 KOG3764 Vesicular amine transp 98.5 9.1E-07 2E-11 80.3 10.4 141 207-347 113-254 (464)
184 KOG2615 Permease of the major 98.5 7.4E-07 1.6E-11 80.5 9.6 104 210-314 78-181 (451)
185 TIGR00883 2A0106 metabolite-pr 98.5 3.8E-06 8.2E-11 78.3 14.9 102 211-312 46-155 (394)
186 TIGR00901 2A0125 AmpG-related 98.5 7.1E-06 1.5E-10 75.9 16.1 128 217-344 38-182 (356)
187 PRK15011 sugar efflux transpor 98.4 4.6E-05 9.9E-10 71.7 21.0 132 213-345 65-199 (393)
188 KOG2615 Permease of the major 98.4 7.5E-06 1.6E-10 74.1 12.9 42 272-313 371-412 (451)
189 KOG1330 Sugar transporter/spin 98.4 4.1E-07 8.8E-12 84.2 4.9 138 208-345 76-214 (493)
190 TIGR00896 CynX cyanate transpo 98.3 1.9E-05 4E-10 73.2 15.7 107 207-315 42-148 (355)
191 TIGR01301 GPH_sucrose GPH fami 98.3 4.6E-05 1E-09 73.0 18.4 139 206-344 45-222 (477)
192 PRK09528 lacY galactoside perm 98.3 3E-05 6.4E-10 73.6 17.1 137 206-343 52-194 (420)
193 PRK11902 ampG muropeptide tran 98.3 7.5E-05 1.6E-09 70.4 18.9 131 214-345 46-186 (402)
194 TIGR00805 oat sodium-independe 98.2 1.6E-05 3.4E-10 79.4 12.8 105 210-314 78-233 (633)
195 TIGR00806 rfc RFC reduced fola 98.2 8.1E-05 1.7E-09 70.4 15.4 102 211-313 73-174 (511)
196 TIGR00882 2A0105 oligosacchari 98.2 0.00011 2.5E-09 69.0 16.8 135 206-343 44-186 (396)
197 PF00083 Sugar_tr: Sugar (and 98.0 5.1E-08 1.1E-12 93.4 -9.1 102 207-308 53-157 (451)
198 KOG2532 Permease of the major 98.0 0.00018 3.9E-09 68.8 15.0 129 210-338 83-214 (466)
199 TIGR00792 gph sugar (Glycoside 98.0 0.00018 4E-09 68.4 14.2 138 207-344 42-198 (437)
200 KOG2816 Predicted transporter 98.0 0.00011 2.5E-09 70.0 12.5 138 210-350 72-209 (463)
201 COG3104 PTR2 Dipeptide/tripept 97.9 0.00022 4.8E-09 67.2 13.3 126 213-339 74-205 (498)
202 KOG2504 Monocarboxylate transp 97.9 0.00023 5E-09 68.9 13.2 131 210-342 91-223 (509)
203 KOG0252 Inorganic phosphate tr 97.8 0.00036 7.7E-09 65.0 13.0 93 206-298 90-189 (538)
204 PF06813 Nodulin-like: Nodulin 97.8 0.00074 1.6E-08 59.0 13.7 106 208-315 45-157 (250)
205 TIGR02718 sider_RhtX_FptX side 97.8 0.0016 3.5E-08 61.0 17.2 71 273-343 117-187 (390)
206 TIGR00902 2A0127 phenyl propri 97.8 0.0022 4.9E-08 60.0 17.5 119 208-328 47-167 (382)
207 PF03092 BT1: BT1 family; Int 97.7 0.0019 4E-08 61.7 16.9 69 273-341 338-414 (433)
208 COG0738 FucP Fucose permease [ 97.7 0.0036 7.9E-08 57.6 17.4 106 209-314 57-165 (422)
209 PRK15462 dipeptide/tripeptide 97.7 0.043 9.3E-07 53.1 25.5 41 270-310 394-435 (493)
210 PRK11128 putative 3-phenylprop 97.7 0.0025 5.3E-08 59.7 16.9 133 208-343 47-181 (382)
211 TIGR00805 oat sodium-independe 97.7 0.0014 3E-08 65.6 15.5 67 7-73 193-283 (633)
212 TIGR00889 2A0110 nucleoside tr 97.6 0.0071 1.5E-07 57.5 18.3 39 207-245 45-84 (418)
213 PRK09669 putative symporter Ya 97.6 0.001 2.2E-08 63.7 12.7 137 207-343 52-207 (444)
214 TIGR00806 rfc RFC reduced fola 97.5 0.0037 8.1E-08 59.4 15.0 61 19-80 149-212 (511)
215 PF11700 ATG22: Vacuole efflux 97.5 0.0063 1.4E-07 58.6 17.0 139 207-345 77-252 (477)
216 TIGR00788 fbt folate/biopterin 97.5 0.0065 1.4E-07 58.6 16.8 125 218-344 78-212 (468)
217 KOG3764 Vesicular amine transp 97.4 0.00073 1.6E-08 61.9 8.8 62 9-70 182-246 (464)
218 KOG2533 Permease of the major 97.4 0.002 4.3E-08 62.1 12.3 138 208-345 89-232 (495)
219 PRK10429 melibiose:sodium symp 97.4 0.0046 9.9E-08 59.8 15.0 137 207-343 49-204 (473)
220 KOG2563 Permease of the major 97.4 0.0089 1.9E-07 55.8 15.8 144 208-351 309-461 (480)
221 KOG2816 Predicted transporter 97.4 0.014 2.9E-07 56.0 17.3 104 209-313 286-390 (463)
222 PRK11462 putative transporter; 97.4 0.011 2.3E-07 57.0 16.9 137 207-343 52-207 (460)
223 PF13347 MFS_2: MFS/sugar tran 97.3 0.0011 2.4E-08 63.1 9.0 133 210-342 47-200 (428)
224 KOG0253 Synaptic vesicle trans 97.3 0.013 2.7E-07 53.6 14.6 135 208-345 121-255 (528)
225 KOG4686 Predicted sugar transp 97.1 0.028 6E-07 49.6 14.1 103 212-317 312-416 (459)
226 TIGR00880 2_A_01_02 Multidrug 97.0 0.0023 5E-08 49.8 6.7 55 19-73 86-141 (141)
227 PF05631 DUF791: Protein of un 97.0 0.23 5E-06 45.4 19.8 136 210-346 79-222 (354)
228 TIGR00926 2A1704 Peptide:H+ sy 96.7 0.07 1.5E-06 53.5 16.0 102 214-315 37-150 (654)
229 KOG3762 Predicted transporter 96.7 0.0075 1.6E-07 57.5 8.1 130 207-336 413-543 (618)
230 PF03209 PUCC: PUCC protein; 96.4 0.78 1.7E-05 42.8 24.0 39 207-245 251-290 (403)
231 PF03092 BT1: BT1 family; Int 96.3 0.046 9.9E-07 52.2 11.2 128 218-346 42-181 (433)
232 PF01306 LacY_symp: LacY proto 96.3 0.11 2.3E-06 48.9 13.2 130 209-342 52-190 (412)
233 COG2211 MelB Na+/melibiose sym 96.2 0.14 3.1E-06 48.7 13.8 131 210-340 58-207 (467)
234 PF01770 Folate_carrier: Reduc 96.2 0.7 1.5E-05 43.4 18.0 62 19-80 128-191 (412)
235 KOG2563 Permease of the major 96.1 0.1 2.3E-06 48.9 12.2 113 201-314 81-201 (480)
236 PF05978 UNC-93: Ion channel r 95.9 0.41 8.9E-06 38.6 13.2 104 203-307 40-143 (156)
237 TIGR00769 AAA ADP/ATP carrier 95.6 2.4 5.1E-05 40.9 20.2 41 273-313 149-189 (472)
238 PRK09848 glucuronide transport 95.5 0.29 6.3E-06 46.8 13.2 32 207-238 51-87 (448)
239 PF03825 Nuc_H_symport: Nucleo 95.4 1.4 3.1E-05 41.6 16.9 44 207-250 44-88 (400)
240 TIGR00939 2a57 Equilibrative N 95.0 3.5 7.5E-05 39.4 18.3 36 271-306 390-425 (437)
241 COG0477 ProP Permeases of the 94.4 1.4 3E-05 38.5 13.7 104 210-313 49-156 (338)
242 TIGR01272 gluP glucose/galacto 92.8 0.82 1.8E-05 41.5 9.3 75 272-346 29-120 (310)
243 KOG2325 Predicted transporter/ 91.9 3.3 7.2E-05 39.9 12.3 136 207-342 78-231 (488)
244 PF05631 DUF791: Protein of un 90.4 6.9 0.00015 36.0 12.4 14 5-18 86-99 (354)
245 KOG2325 Predicted transporter/ 90.1 4.6 0.0001 38.9 11.4 53 273-326 408-460 (488)
246 PF03209 PUCC: PUCC protein; 90.0 4.7 0.0001 37.8 11.1 49 271-319 107-155 (403)
247 PF01733 Nucleoside_tran: Nucl 89.8 0.11 2.4E-06 47.2 0.4 58 21-78 29-91 (309)
248 KOG3626 Organic anion transpor 89.3 12 0.00026 38.0 14.0 43 273-315 606-649 (735)
249 PF12832 MFS_1_like: MFS_1 lik 88.8 6.2 0.00013 27.5 9.0 33 206-238 41-73 (77)
250 PF02487 CLN3: CLN3 protein; 88.6 22 0.00047 33.5 16.9 37 274-310 356-392 (402)
251 COG2270 Permeases of the major 88.3 8 0.00017 36.4 11.3 98 209-306 67-168 (438)
252 COG2807 CynX Cyanate permease 85.6 30 0.00066 32.1 15.3 123 210-334 57-180 (395)
253 TIGR00769 AAA ADP/ATP carrier 82.8 48 0.001 32.1 17.9 39 4-42 147-187 (472)
254 COG3104 PTR2 Dipeptide/tripept 81.3 55 0.0012 31.7 17.0 56 12-67 147-202 (498)
255 PF03219 TLC: TLC ATP/ADP tran 81.2 56 0.0012 31.8 18.9 42 273-314 164-205 (491)
256 PF03137 OATP: Organic Anion T 78.1 0.69 1.5E-05 45.5 0.0 42 274-315 472-514 (539)
257 PF01770 Folate_carrier: Reduc 78.1 64 0.0014 30.6 15.5 123 218-341 59-183 (412)
258 KOG3098 Uncharacterized conser 77.8 34 0.00073 33.0 11.1 102 203-305 53-154 (461)
259 PF06813 Nodulin-like: Nodulin 77.7 6.1 0.00013 34.6 5.8 56 19-74 130-185 (250)
260 PF06963 FPN1: Ferroportin1 (F 73.1 89 0.0019 29.9 14.1 57 283-339 143-199 (432)
261 PF13000 Acatn: Acetyl-coenzym 72.7 33 0.00072 33.3 9.5 31 218-248 58-89 (544)
262 PF03219 TLC: TLC ATP/ADP tran 68.1 1.2E+02 0.0027 29.5 18.9 39 5-43 163-203 (491)
263 KOG2513 Protein required for m 67.3 47 0.001 32.8 9.3 79 14-92 523-617 (647)
264 PF00854 PTR2: POT family; In 67.2 59 0.0013 30.1 10.2 64 272-335 52-118 (372)
265 PF12832 MFS_1_like: MFS_1 lik 66.0 3.1 6.8E-05 29.0 1.0 23 2-24 49-71 (77)
266 PF07672 MFS_Mycoplasma: Mycop 65.3 98 0.0021 27.3 12.9 52 17-68 3-59 (267)
267 KOG2881 Predicted membrane pro 61.4 81 0.0017 27.7 8.7 30 214-243 254-283 (294)
268 KOG3098 Uncharacterized conser 59.4 1.7E+02 0.0038 28.2 22.1 99 205-304 284-403 (461)
269 PRK03612 spermidine synthase; 58.5 1.9E+02 0.0041 28.4 18.2 45 289-333 145-190 (521)
270 PF06779 DUF1228: Protein of u 58.5 48 0.001 23.6 5.9 45 209-253 36-80 (85)
271 PF12854 PPR_1: PPR repeat 55.4 10 0.00022 21.5 1.8 17 77-93 17-33 (34)
272 PF06963 FPN1: Ferroportin1 (F 54.3 2E+02 0.0044 27.5 24.0 98 208-305 301-408 (432)
273 KOG4686 Predicted sugar transp 52.2 37 0.0008 30.6 5.4 14 5-18 317-330 (459)
274 PF11151 DUF2929: Protein of u 51.9 64 0.0014 21.0 6.0 44 31-74 13-56 (57)
275 KOG1479 Nucleoside transporter 50.0 2.3E+02 0.005 26.8 12.3 29 48-76 181-209 (406)
276 PF01535 PPR: PPR repeat; Int 44.7 21 0.00046 18.9 2.0 18 78-95 11-28 (31)
277 PF11947 DUF3464: Protein of u 44.3 1.6E+02 0.0035 23.6 7.5 78 222-300 56-141 (153)
278 TIGR00756 PPR pentatricopeptid 44.2 35 0.00077 18.4 3.0 20 77-96 10-29 (35)
279 KOG3574 Acetyl-CoA transporter 43.3 59 0.0013 30.6 5.5 30 273-302 389-418 (510)
280 PF13041 PPR_2: PPR repeat fam 41.6 36 0.00079 20.9 2.9 21 76-96 12-32 (50)
281 PF00854 PTR2: POT family; In 39.5 47 0.001 30.8 4.6 52 17-68 69-120 (372)
282 COG5336 Uncharacterized protei 38.7 83 0.0018 23.5 4.6 22 218-239 60-82 (116)
283 KOG3810 Micronutrient transpor 37.4 3.5E+02 0.0077 25.3 12.8 57 21-77 131-189 (433)
284 COG5336 Uncharacterized protei 36.4 1.8E+02 0.004 21.7 6.5 53 284-336 37-91 (116)
285 KOG3574 Acetyl-CoA transporter 34.0 4.2E+02 0.0092 25.2 13.9 30 219-248 82-117 (510)
286 PF13428 TPR_14: Tetratricopep 33.7 83 0.0018 18.6 3.6 22 75-96 9-30 (44)
287 PRK10263 DNA translocase FtsK; 31.9 7.6E+02 0.016 27.5 14.3 21 209-229 61-81 (1355)
288 PF13812 PPR_3: Pentatricopept 31.7 73 0.0016 17.2 2.9 18 79-96 13-30 (34)
289 PF07721 TPR_4: Tetratricopept 29.9 45 0.00098 17.3 1.7 14 78-91 12-25 (26)
290 PF03186 CobD_Cbib: CobD/Cbib 29.5 1.4E+02 0.0031 26.8 5.8 18 79-96 107-124 (295)
291 COG4291 Predicted membrane pro 29.3 1.3E+02 0.0029 25.2 4.9 16 68-83 65-80 (228)
292 PF02487 CLN3: CLN3 protein; 29.0 5.1E+02 0.011 24.6 11.1 24 213-236 72-97 (402)
293 COG4708 Predicted membrane pro 27.8 92 0.002 24.6 3.6 26 207-232 141-166 (169)
294 KOG3097 Predicted membrane pro 27.0 4.9E+02 0.011 24.2 8.4 31 214-244 72-102 (390)
295 PF13000 Acatn: Acetyl-coenzym 26.7 6.3E+02 0.014 24.9 19.5 32 271-302 423-454 (544)
296 TIGR00986 3a0801s05tom22 mitoc 26.6 1.1E+02 0.0025 24.1 3.9 22 278-299 58-79 (145)
297 TIGR02978 phageshock_pspC phag 26.5 1E+02 0.0022 23.7 3.6 32 45-76 27-64 (121)
298 PF05297 Herpes_LMP1: Herpesvi 25.1 24 0.00052 31.1 0.0 13 333-345 178-190 (381)
299 PRK10697 DNA-binding transcrip 25.0 85 0.0018 23.9 2.9 30 64-93 57-86 (118)
300 PF04281 Tom22: Mitochondrial 22.9 1.6E+02 0.0034 23.2 4.1 23 278-300 60-82 (137)
301 PF06779 DUF1228: Protein of u 22.8 2.9E+02 0.0063 19.6 6.8 45 23-67 30-74 (85)
302 KOG4332 Predicted sugar transp 22.4 5E+02 0.011 23.5 7.5 139 212-350 84-230 (454)
303 PF07719 TPR_2: Tetratricopept 22.0 1.4E+02 0.0031 15.9 3.6 20 77-96 11-30 (34)
304 TIGR00926 2A1704 Peptide:H+ sy 21.5 2.8E+02 0.0062 28.2 6.8 49 18-66 122-177 (654)
305 KOG3762 Predicted transporter 20.9 1.2E+02 0.0026 30.0 3.7 31 209-239 55-85 (618)
306 PF04505 Dispanin: Interferon- 20.7 3.1E+02 0.0067 19.3 5.0 17 79-95 49-65 (82)
307 KOG3810 Micronutrient transpor 20.2 2.8E+02 0.0061 26.0 5.7 92 221-313 63-154 (433)
308 PF04024 PspC: PspC domain; I 20.1 1E+02 0.0022 20.3 2.3 30 45-74 27-60 (61)
309 PF10183 ESSS: ESSS subunit of 20.0 1.7E+02 0.0038 21.6 3.8 35 320-354 61-97 (105)
No 1
>KOG0253 consensus Synaptic vesicle transporter SV2 (major facilitator superfamily) [General function prediction only]
Probab=100.00 E-value=7.8e-50 Score=349.42 Aligned_cols=337 Identities=39% Similarity=0.648 Sum_probs=271.0
Q ss_pred Cccccchhhhhhcccccc--------------------------------------------------------hhHHHH
Q 018373 1 MLLGAYSWGIISDNYGRR--------------------------------------------------------GRWMVA 24 (357)
Q Consensus 1 ~~~ga~~~g~~~d~~grr--------------------------------------------------------g~~~~~ 24 (357)
|++||..||.++|+.||| +.++.+
T Consensus 126 mllga~~w~l~~d~~grr~~f~~T~l~t~v~~~is~~spnf~~L~~f~~l~~~g~gg~pv~~~~yle~lp~~~r~~~~V~ 205 (528)
T KOG0253|consen 126 MLVGAMVWGLSADTIGRRKGFNLTFLVTGVFGVISGASPNFASLCVFRALWGFGVGGLPVDSAIYLEFLPSSHRWLLTVM 205 (528)
T ss_pred hhhhhhhhheehhhhhcchhhhhhHHHHHHHHHhhcCCCCeehhhHHHHHHhccCCCccHhHHHHHHhccCcCCCcchhH
Confidence 689999999999999999 444555
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCcchHHHHHHhhHHHHHHHHHHhcCCCChHHHHHcCChHHHHHHHHHHHHHcCCCCCCC
Q 018373 25 LSAFWTAGTIFEASLAWVVMTRLNWRWLLAFSSVPSFALLLFYGLAPESPRYLCAKARTVDAHRILEKMAFVNQTKLPPG 104 (357)
Q Consensus 25 ~~~~~~~G~l~~~~i~~~~~~~~~WR~~~~~~~~p~l~~~~~~~~lpESP~wL~~~g~~~~a~~~l~~l~~~~~~~~~~~ 104 (357)
. .+|.+|+++++.++|..+...|||+......+|..+.....+++||||||++.|||.+||.+.|+|+++.|+++.|..
T Consensus 206 ~-~~waig~v~ea~law~vm~~~gwr~~l~~~~~pl~~~a~f~~w~~ESpRf~~~~G~~~kAletL~kiArmNg~qlplg 284 (528)
T KOG0253|consen 206 S-FFWAIGQVFEALLAWGVMSNFGWRYLLFTSSTPLMFAARFLVWVYESPRFYLAKGDDYKALETLHKIARMNGKQLPLG 284 (528)
T ss_pred H-HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhHHHHHHHHHhhcccCcchhhhcCChHHHHHHHHHHHHhcCCCCCcc
Confidence 5 999999999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred cccchhhhhhhhhhhhhhcchhhhhhhhhhhhhccchhhhhhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCC
Q 018373 105 ILVSDKAIKENEESNLLRDTHMLSMTRKITDKLKSGFSSFFMLFSRKLIRTTLLLWVLFFANVFSYYGAVLLTSKLSSGD 184 (357)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~ 184 (357)
++.....++.+++..+.. +...+.+++.......+++++.+|+++.+|.+||++.+.||+..+....+.+..
T Consensus 285 vl~~s~~~~~e~e~~~~~--------~~~~~a~ke~rg~~~nLlsp~lrkttlllw~iwfgnafsyyg~VLlttelfqsg 356 (528)
T KOG0253|consen 285 VLESSAIDRQEQEESDLD--------DSKSSAAKEVRGGTTNLLSPKLRKTTLLLWRIWFGNAFSYYGSVLLTTELFQSG 356 (528)
T ss_pred eeeeehhhhhhhhhhchh--------hhhhccccccccchHhhcChHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcc
Confidence 765433222222211100 001111222334567789999999999999999999999999988776654433
Q ss_pred CCCC------cccccC---CCCCchhhHHHHHHHHhhhhhHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHhhhhhHH
Q 018373 185 NKCG------SKVLHA---DKSKDNSLYVDVFIASLAELPGLILSAIIVDKIGRKLSMVLMFVSACIFLLPLVFHQSAVV 255 (357)
Q Consensus 185 ~~~~------~~~~~~---~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~d~~GRR~~~~~~~~~~~i~~~~~~~~~~~~~ 255 (357)
.-|+ ..+... -...+..-|-..+++.+.+++|.++.++++||+|||+.+..+.+.++++.+.+........
T Consensus 357 d~c~~~~r~~p~e~e~~~~c~~s~~~dYrdllitslaefPGlLIt~~iverlGRKkTMal~l~~f~iflfll~~c~~rn~ 436 (528)
T KOG0253|consen 357 DACPLYNRFLPTELETRANCPLSVAKDYRDLLITSLAEFPGLLITGVIVERLGRKKTMALSLILFGIFLFLLTTCKTRNA 436 (528)
T ss_pred CccccchhcchhHHHhhhcCCccchhHHHHHHHHHHhhCCchhHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHhcCcch
Confidence 3232 111110 0111122367788899999999999999999999999999999999999888765433333
Q ss_pred HHHHHHHHHHHhhhhhhhhhhhccccccCcchhhHHHHHHHHHHHHHhHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHH
Q 018373 256 TTVLLFGVRMCVTGTITVATIYAPEIYPTSARTTGFGVASSLGKVGGMVCPLVAVGLVTSCHLRLAVILFEVVFVLAIAS 335 (357)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~~~~~~ElfPt~~R~~~~~~~~~~~~l~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 335 (357)
...+.|...+++.+.+...|+|++|+|||.+|++|.|.|..++|+++++.|+++ +....+.+.+..+|+++++++.++
T Consensus 437 ~tvllf~arafisg~fqvaYvYtPEVyPTavRatgvGtcSsmaRIggI~~p~iA--~~~e~s~sl~i~vy~~~~ilagIa 514 (528)
T KOG0253|consen 437 YTVLLFTARAFISGAFQVAYVYTPEVYPTAVRATGVGTCSSMARIGGIFSPVIA--MRAELSTSLPIFVYGALFILAGIA 514 (528)
T ss_pred hHHHHHHHHHHHhchheEEEEecCcccchhhhhcchhhhhhHHhhhhhhhhHHH--HHhccceeehHHHHHHHHHHHHHH
Confidence 445667777888899999999999999999999999999999999999999988 455556678899999999999999
Q ss_pred HhhccccccCcch
Q 018373 336 SLLFPFETMGREL 348 (357)
Q Consensus 336 ~~~~~pet~~~~l 348 (357)
+-+++-|||||++
T Consensus 515 vcffPiEtkGR~l 527 (528)
T KOG0253|consen 515 VCFFPIETKGRSL 527 (528)
T ss_pred heeeeeccCCCCC
Confidence 9999999999986
No 2
>KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]
Probab=100.00 E-value=1.8e-40 Score=309.90 Aligned_cols=300 Identities=20% Similarity=0.296 Sum_probs=218.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHH--HHhcCcchHHHHHHhhHHHHHHHHHHhcCCCChHHHHH-cCChHHHHHHHHHHHH
Q 018373 19 GRWMVALSAFWTAGTIFEASLAW--VVMTRLNWRWLLAFSSVPSFALLLFYGLAPESPRYLCA-KARTVDAHRILEKMAF 95 (357)
Q Consensus 19 g~~~~~~~~~~~~G~l~~~~i~~--~~~~~~~WR~~~~~~~~p~l~~~~~~~~lpESP~wL~~-~g~~~~a~~~l~~l~~ 95 (357)
|....+.+.+.++|.+++..++. .++++..|++.+.+..+|+++.++..+++|||||||.. |||.|||+|+++++|+
T Consensus 151 G~~g~~~~~~~~~g~ll~~~~~l~~ilGt~~~W~~l~~~~~i~~~~~l~~l~~~PESPk~Ll~~k~~~~~A~~sl~~y~G 230 (485)
T KOG0569|consen 151 GALGTLLQIGVVIGILLGQVLGLPSLLGTEDLWPYLLAFPLIPALLQLALLPFLPESPKYLLIKKGDEEEARKALKFYRG 230 (485)
T ss_pred cHHHHHHHHHHHHHHHHHHHHccHHhcCCCcchHHHHHHHHHHHHHHHHHHhcCCCCcchHHHHcCCHHHHHHHHHHHhC
Confidence 99999999999999999877764 35677889999999999999999999999999999987 8999999999999987
Q ss_pred HcCCCCCCCcccchhhhhhhhhhhhhhcchhhhhhhhhhhhhccchhhhhhhcch-hhHHHHHHHHHHHHH------HHH
Q 018373 96 VNQTKLPPGILVSDKAIKENEESNLLRDTHMLSMTRKITDKLKSGFSSFFMLFSR-KLIRTTLLLWVLFFA------NVF 168 (357)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~~~~~~~------~~~ 168 (357)
.+.. +.+.+++.++.+ +++.++++..++.+++++ ++|+...+.....++ +..
T Consensus 231 ~~~~-----------~~~~e~~~~e~~----------~~~~~~~~~~sl~~~~~~~~lR~~~~i~~~v~~~qq~sGi~ai 289 (485)
T KOG0569|consen 231 KEDV-----------EAEIEEMLREIE----------EEELEKKKQISLRQLLKNPTLRRPLLIGIVVSFAQQFSGINAI 289 (485)
T ss_pred CCcc-----------hhHHHHHHHHHH----------HhccccccCCcHHHHhcCcchhHHHHHHHHHHHHHHhcCccee
Confidence 4211 111111111000 000111233466777765 455554444433332 445
Q ss_pred HHHHHHHHhhhhcCCCCCCCcccccCCCCCchhhHHHHHHHHhhhhhHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHH
Q 018373 169 SYYGAVLLTSKLSSGDNKCGSKVLHADKSKDNSLYVDVFIASLAELPGLILSAIIVDKIGRKLSMVLMFVSACIFLLPLV 248 (357)
Q Consensus 169 ~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~d~~GRR~~~~~~~~~~~i~~~~~~ 248 (357)
.+|+..++... +...+.+.+.+ ...++..++..+++.+++||.|||++++.+..++.++.+.+.
T Consensus 290 ~~Yst~i~~~a---------------G~~~~~a~~an-~~~g~v~~~~t~~~~~lid~~gRRpLll~~~~~~~~~~~~~~ 353 (485)
T KOG0569|consen 290 FFYSTSIFKTA---------------GFTPEEAQYAN-LGIGIVNLLSTLVSPFLIDRLGRRPLLLISLSLMAVALLLMS 353 (485)
T ss_pred HHHHHHHHHHc---------------CCCHHHHHHHH-HHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHH
Confidence 56666655431 01222333444 456788899999999999999999999998888777655543
Q ss_pred h----hh-h-hHHH---HHHHHH-HHHHhhhhhhhhhhhccccccCcchhhHHHHHHHHHHHHHhHHHHHHHHHHhhcch
Q 018373 249 F----HQ-S-AVVT---TVLLFG-VRMCVTGTITVATIYAPEIYPTSARTTGFGVASSLGKVGGMVCPLVAVGLVTSCHL 318 (357)
Q Consensus 249 ~----~~-~-~~~~---~~~~~~-~~~~~~~~~~~~~~~~~ElfPt~~R~~~~~~~~~~~~l~~~~~p~~~~~l~~~~~~ 318 (357)
. .+ . .+.. .+..+. ...+..|+.+++|.+.+|+||++.|+++++++..++|+.+++..+.++++.+..+.
T Consensus 354 ~~~~l~~~~~~~~~y~~i~~~~~~~~~f~~G~gpi~~fi~aELf~~~~R~aa~s~~~~~~w~~~fiv~~~fp~l~~~~g~ 433 (485)
T KOG0569|consen 354 IALFLSNSFGSWLSYLCIAAIFLFIISFAIGPGPIPWFIGAELFPQSARSAAQSVATAVNWLSNFIVGFAFPPLQNVIGP 433 (485)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHhhhcCCCchhHHHHHHhCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 2 11 1 1211 111111 22344577789999999999999999999999999999999999999988777665
Q ss_pred hhHHHHHHHHHHHHHHHHhhccccccCcchhhhHhhhh
Q 018373 319 RLAVILFEVVFVLAIASSLLFPFETMGRELKDTVDAIE 356 (357)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~~~~pet~~~~l~e~~~~~~ 356 (357)
..+++|.+.+++..+++++++||||||+.+|++++++
T Consensus 434 -~~filF~i~~~~~~i~~~~~lPETkgr~~~eI~~~~~ 470 (485)
T KOG0569|consen 434 -YVFILFVIPLAIFLIYLYRYLPETKGRTPYEIIEELE 470 (485)
T ss_pred -hhhHHHHHHHHHHHHHHHHhCcccCCCCHHHHHHHHH
Confidence 6788999999999999999999999999999999876
No 3
>TIGR01299 synapt_SV2 synaptic vesicle protein SV2. This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices.
Probab=100.00 E-value=1e-36 Score=301.56 Aligned_cols=342 Identities=23% Similarity=0.379 Sum_probs=234.7
Q ss_pred ccccchhhhhhcccccc---------------------------------------------------------hhHHHH
Q 018373 2 LLGAYSWGIISDNYGRR---------------------------------------------------------GRWMVA 24 (357)
Q Consensus 2 ~~ga~~~g~~~d~~grr---------------------------------------------------------g~~~~~ 24 (357)
++|++++|.++||+||| |+..++
T Consensus 216 iiG~li~G~LsDR~GRR~~lii~lil~~i~~ll~afa~s~~~llv~R~l~G~g~g~~~p~~~~~isE~~p~~~Rg~~~g~ 295 (742)
T TIGR01299 216 MVGAFFWGGLADKLGRKQCLLICLSVNGFFAFFSSFVQGYGFFLFCRLLSGFGIGGAIPIVFSYFAEFLAQEKRGEHLSW 295 (742)
T ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHH
Confidence 68999999999999999 777788
Q ss_pred HHHHHHHHHHHHHHHHHHHhc-------------CcchHHHHHHhhHHHHHHHHHHhcCCCChHHHHHcCChHHHHHHHH
Q 018373 25 LSAFWTAGTIFEASLAWVVMT-------------RLNWRWLLAFSSVPSFALLLFYGLAPESPRYLCAKARTVDAHRILE 91 (357)
Q Consensus 25 ~~~~~~~G~l~~~~i~~~~~~-------------~~~WR~~~~~~~~p~l~~~~~~~~lpESP~wL~~~g~~~~a~~~l~ 91 (357)
++.++.+|.+++..+++.+.+ ..+||++++++++|.++.++.++++||||+||..|||.+||.++++
T Consensus 296 ~~~~~~iG~ila~~la~~il~~~G~~~~~g~~~~~~gWR~l~~i~~lp~ll~ll~~~~lPESPrwL~~~gr~~eA~~iL~ 375 (742)
T TIGR01299 296 LCMFWMIGGIYAAAMAWAIIPHYGWSFQMGSAYQFHSWRVFVIVCAFPCVFAIGALTFMPESPRFFLENGKHDEAWMILK 375 (742)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccchhccccccccccHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHCCCHHHHHHHHH
Confidence 888899999888877655432 2479999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCCC--CCCcccchhhhhhhhhhhhh---h---cch-hhh-hhhhhhhhhccchhhhhhhcchhhHHHHHHHHH
Q 018373 92 KMAFVNQTKL--PPGILVSDKAIKENEESNLL---R---DTH-MLS-MTRKITDKLKSGFSSFFMLFSRKLIRTTLLLWV 161 (357)
Q Consensus 92 ~l~~~~~~~~--~~~~~~~~~~~~~~~~~~~~---~---~~~-~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 161 (357)
++++.|++.. |...... .+++.....+ + ... ..+ ...............++.+|+++++++++++++
T Consensus 376 ~i~~~n~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lf~~~~~~~tl~l~~ 452 (742)
T TIGR01299 376 LIHDTNMRAKGHPEKVFSV---NHIKTIHQEDELIEIESDTGTWYQRCFVRALSEGGGIWGNFLRCFNPEVREITIKLMG 452 (742)
T ss_pred HHhcCCCCCcCchhHHHHH---HHHHHhhhhhhhhcccccccchhhcchhhhhhhhhhHHHHHHHHcCccHHHHHHHHHH
Confidence 9998775321 1100000 0000000000 0 000 000 000000000111224677899999999999999
Q ss_pred HHHHHHHHHHHHHHHhhhhcCCC--------------------------------------------------------C
Q 018373 162 LFFANVFSYYGAVLLTSKLSSGD--------------------------------------------------------N 185 (357)
Q Consensus 162 ~~~~~~~~~y~~~~~~~~~~~~~--------------------------------------------------------~ 185 (357)
.|+...+.||+...|.|.+.... .
T Consensus 453 ~wf~~~~~yygl~~w~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 532 (742)
T TIGR01299 453 VWFTLSFGYYGLSVWFPDMIKHLQADDYAALTKNFPGDKVAHFSFNFTLENQIHRGGEYDNDKFIGLKFKSVSFEDSLFE 532 (742)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccchhccccccchhhhhccccccccchhhccccccccccccccc
Confidence 99999999999999998652100 0
Q ss_pred CCCcccccCC---------------------------------------------CCCc---hhhHHHHHHHHhhhhhHH
Q 018373 186 KCGSKVLHAD---------------------------------------------KSKD---NSLYVDVFIASLAELPGL 217 (357)
Q Consensus 186 ~~~~~~~~~~---------------------------------------------~~~~---~~~~~~~~i~~~~~~~~~ 217 (357)
.|+....... .+.+ ...+...++.+++.++|.
T Consensus 533 ~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~l~~l~~i~G~ 612 (742)
T TIGR01299 533 ECTFDDVTSSNTFFKNCTFIDTLFENTDFEEYKFIDSEFQNCSFLHNKEGCPIDFDGDDEGAYMIYFVNFLGTLAVLPGN 612 (742)
T ss_pred ccceeeccccchhhhccchhhhhccccchhhhhhhhhhhhhccccccCCccCccCCccchhHHHHHHHHHHHHHHHHHHH
Confidence 0110000000 0000 112344556678889999
Q ss_pred HHHHHHHHhhchhHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhhhhccccccCcchhhHHHHHHHH
Q 018373 218 ILSAIIVDKIGRKLSMVLMFVSACIFLLPLVFHQSAVVTTVLLFGVRMCVTGTITVATIYAPEIYPTSARTTGFGVASSL 297 (357)
Q Consensus 218 ~~~~~l~d~~GRR~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ElfPt~~R~~~~~~~~~~ 297 (357)
+++++++||+|||++++++.++++++.+.+.+..+.....++.++..++..+.++..+.+++|+||++.|++++|+++..
T Consensus 613 il~g~L~Dr~GRr~~l~~~~~lsai~~ll~~~~~s~~~ll~~~~l~g~~~~~~~~~~~a~~aEl~Pt~~Rgta~Gi~~~~ 692 (742)
T TIGR01299 613 IVSALLMDKIGRLRMLAGSMVLSCISCFFLSFGNSESAMIALLCLFGGLSIAAWNALDVLTVELYPSDKRATAFGFLNAL 692 (742)
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHH
Confidence 99999999999999999888888777665554332222222222333344456678899999999999999999999999
Q ss_pred HHHHHhHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHHhhccccccCcch
Q 018373 298 GKVGGMVCPLVAVGLVTSCHLRLAVILFEVVFVLAIASSLLFPFETMGREL 348 (357)
Q Consensus 298 ~~l~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~pet~~~~l 348 (357)
++++++++|++...+.+. +...++++++++.++++++.++ +|||+++.|
T Consensus 693 ~rlGaiigp~i~g~L~~~-~~~~pf~i~a~~lll~~ll~~~-LPET~~~~l 741 (742)
T TIGR01299 693 CKAAAVLGILIFGSFVGI-TKAAPILFASAALACGGLLALK-LPDTRGQVL 741 (742)
T ss_pred HHHHHHHHHHHHHHHHHh-hhHHHHHHHHHHHHHHHHHHHh-CCCCccccc
Confidence 999999999998877654 3445677777777776666655 599999876
No 4
>TIGR00887 2A0109 phosphate:H+ symporter. This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083).
Probab=100.00 E-value=1.1e-34 Score=280.85 Aligned_cols=301 Identities=23% Similarity=0.321 Sum_probs=190.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhc-----------------------CcchHHHHHHhhHHHHHHHHHHhcCCCChH
Q 018373 19 GRWMVALSAFWTAGTIFEASLAWVVMT-----------------------RLNWRWLLAFSSVPSFALLLFYGLAPESPR 75 (357)
Q Consensus 19 g~~~~~~~~~~~~G~l~~~~i~~~~~~-----------------------~~~WR~~~~~~~~p~l~~~~~~~~lpESP~ 75 (357)
|+..++.+.++.+|.+++..++..+.. +++||+++.++++|+++.++.++++|||||
T Consensus 150 g~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~WR~~~~~~~ip~~i~~~~~~~lpESpr 229 (502)
T TIGR00887 150 GAMMAAVFAMQGFGILAGAIVALIVLAGFKHSLEAAADEASCTGSCVPAVDYMWRILIGFGAVPALLALYFRLTIPETPR 229 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccccccccccchhcccHHHHHHHHHHHHHHHHHHHHhCCCCHH
Confidence 777888888888888777766543211 257999999999999999999999999999
Q ss_pred HHHHcCChH-HHHHHHHHHHHHcCCCCCCCcccchhhhhhhhhhhhhhcchhhhhhhhhhhhhccchhhhhhhcch----
Q 018373 76 YLCAKARTV-DAHRILEKMAFVNQTKLPPGILVSDKAIKENEESNLLRDTHMLSMTRKITDKLKSGFSSFFMLFSR---- 150 (357)
Q Consensus 76 wL~~~g~~~-~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~---- 150 (357)
||..|||.+ ++++.++|.++.+. ++. .++.++.++ + ++ ....++++++++
T Consensus 230 ~l~~~~~~~~~a~~~~~~~~~~~~---~~~------~~~~~~~~~--------~-------~~-~~~~~~~~l~~~~~~~ 284 (502)
T TIGR00887 230 YTADVAKDVEQAASDMSAVLQVKI---EAE------PDEVEKAST--------A-------VE-VPKASWSDFFTHFFKW 284 (502)
T ss_pred HHHHhCcchHHHHHHHHHHhcccc---ccC------cccccchhc--------c-------cc-chhhhHHHHHHHHhhh
Confidence 999998874 57777777653211 000 000000000 0 00 001134555542
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCCCcccccCCCCCch-------hhHHHHHHHHhhhhhHHHHHHHH
Q 018373 151 KLIRTTLLLWVLFFANVFSYYGAVLLTSKLSSGDNKCGSKVLHADKSKDN-------SLYVDVFIASLAELPGLILSAII 223 (357)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~i~~~~~~~~~~~~~~l 223 (357)
++++.++.....++.+.+.+|+...+.|.+....+... ....+. .......+..++.+++.++++++
T Consensus 285 ~~~~~~~~~~~~~~~~~~~~y~~~~~~p~i~~~~G~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~l 358 (502)
T TIGR00887 285 RHGKHLLGTAGSWFLLDIAFYGVNLNQKVILSAIGYSP------PAATNNAYEELYKTAVGNLIIALAGTVPGYWVTVFL 358 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHcCCC------CccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 23333444445566667788888777665542211100 000000 00112233445667788999999
Q ss_pred HHhhchhHHHHHHHHHHHHHHHHHHhh--h-h-hHHHHHHHHHHHHHhhhhhhhhhhhccccccCcchhhHHHHHHHHHH
Q 018373 224 VDKIGRKLSMVLMFVSACIFLLPLVFH--Q-S-AVVTTVLLFGVRMCVTGTITVATIYAPEIYPTSARTTGFGVASSLGK 299 (357)
Q Consensus 224 ~d~~GRR~~~~~~~~~~~i~~~~~~~~--~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ElfPt~~R~~~~~~~~~~~~ 299 (357)
+||+|||++++.+..+++++...+... . . ........+...++..+..++.|.+.+|+||++.|+++.|+++.+++
T Consensus 359 ~dr~gRR~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~p~~~R~~~~g~~~~~~~ 438 (502)
T TIGR00887 359 VDIIGRKPIQLMGFFILTVLFFVLGFAYNHLSTHGFLAIYVLAQFFANFGPNATTFIVPGEVFPTRYRSTAHGISAASGK 438 (502)
T ss_pred hhhhcchhHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHhcCCCchhhhhhhccCchhHHHHHHHHHHHHhh
Confidence 999999999887776655544433321 1 1 11111111112222334556789999999999999999999999999
Q ss_pred HHHhHHHHHHHHHHhhc----------chhhHHHHHHHHHHHHHHHHhhccccccCcchhhh
Q 018373 300 VGGMVCPLVAVGLVTSC----------HLRLAVILFEVVFVLAIASSLLFPFETMGRELKDT 351 (357)
Q Consensus 300 l~~~~~p~~~~~l~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~pet~~~~l~e~ 351 (357)
++++++|++.+++.+.. +...++++++++++++.++. ++.||||||++||+
T Consensus 439 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~-~~lpEt~~~~leei 499 (502)
T TIGR00887 439 AGAIIGQFGFLYLAQHGDPTKGYPTGIWMGHVLEIFALFMFLGILFT-LLIPETKGKSLEEL 499 (502)
T ss_pred hHHHHHHHHhhhhhccccccccccccccchHHHHHHHHHHHHHHHHh-eEeccCCCCCHHhh
Confidence 99999999998877632 22346778888887776654 56799999999885
No 5
>KOG0254 consensus Predicted transporter (major facilitator superfamily) [General function prediction only]
Probab=100.00 E-value=5.5e-32 Score=262.47 Aligned_cols=306 Identities=18% Similarity=0.255 Sum_probs=205.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhcC-cchHHHHHHhhHHHHHHHHHHhcCCCChHHHHHcCChHHHHHHHHHHHHHc
Q 018373 19 GRWMVALSAFWTAGTIFEASLAWVVMTR-LNWRWLLAFSSVPSFALLLFYGLAPESPRYLCAKARTVDAHRILEKMAFVN 97 (357)
Q Consensus 19 g~~~~~~~~~~~~G~l~~~~i~~~~~~~-~~WR~~~~~~~~p~l~~~~~~~~lpESP~wL~~~g~~~~a~~~l~~l~~~~ 97 (357)
|.+.+..+.++.+|.+++..+++..... ++||+++.++.+|+++..+..+++|||||||.++||.+||++.++++++.+
T Consensus 177 G~l~~~~~l~~~~Gi~~~~~~~~~~~~~~~~Wr~~~~~~~i~~~~~~~~~~~~pesp~~L~~~g~~~~a~~~l~~l~g~~ 256 (513)
T KOG0254|consen 177 GTLVSLYQLFITIGILLGYCINYGTSKVYAGWRIPLGLALIPAVILALGMLFLPESPRWLIEKGRLEEAKRSLKRLRGLS 256 (513)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhccCCccHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHcCChHHHHHHHHHHhCCC
Confidence 8899999999999999997777654322 589999999999999998889999999999999999999999999998743
Q ss_pred CCCCCCCcccchhhhhhhhhhhhhhcchhhhhhhhhhhhhccchhhhhhhcchhhHHHHHHHHHHHHHHHHHH-HHHHHH
Q 018373 98 QTKLPPGILVSDKAIKENEESNLLRDTHMLSMTRKITDKLKSGFSSFFMLFSRKLIRTTLLLWVLFFANVFSY-YGAVLL 176 (357)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~-y~~~~~ 176 (357)
..+ .+.+.++.+.. ... .....+....+.+++++..+++..+...+...+.++. +...++
T Consensus 257 ~~~---------~~~~~~~~~~~-----~~~-----~~~~~~~~~~~~~l~~~~~~~~~~i~~~l~~fqq~tG~~~~~~Y 317 (513)
T KOG0254|consen 257 PED---------VEVELELLKIK-----LLV-----EAEVAEGKASWGELFSPKVRKRLIIGLLLQLFQQLTGINYVFYY 317 (513)
T ss_pred Ccc---------hHHHHHHHHHH-----HHH-----hhhcccccccHHHhcCcchHHHHHHHHHHHHHHHHhCCceEEee
Confidence 111 01111111100 000 0000011113455666666676665554443333322 222222
Q ss_pred hhhhcCCCCCCCcccccCCCCCchhhHHHHHHHHhhhhhHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHh----h-h
Q 018373 177 TSKLSSGDNKCGSKVLHADKSKDNSLYVDVFIASLAELPGLILSAIIVDKIGRKLSMVLMFVSACIFLLPLVF----H-Q 251 (357)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~d~~GRR~~~~~~~~~~~i~~~~~~~----~-~ 251 (357)
.+.+..... ...+. ....++.++..+++.+++.+++||+|||++++.+...+.++++.+.. . .
T Consensus 318 ~~~if~~~g----------~~~~~--~~~~~~~~~v~~~~t~~~~~lvd~~gRr~lll~s~~~m~~~~~~~~~~~~~~~~ 385 (513)
T KOG0254|consen 318 STTIFKSAG----------LKSDT--FLASIILGVVNFLGTLVATYLVDRFGRRKLLLFGAAGMSICLVILAVVGVFALY 385 (513)
T ss_pred hHHHHHhcC----------CCCch--HHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHhHHHHHHHHHHHHHHHHHhcc
Confidence 232221110 11111 33445667888899999999999999999999988877766655432 1 1
Q ss_pred h-------hHHHHHHHHH-HHHHhhhhhhhhhhhccccccCcchhhHHHHHHHHHHHHHhHHHHHHHHHHhhcchhhHHH
Q 018373 252 S-------AVVTTVLLFG-VRMCVTGTITVATIYAPEIYPTSARTTGFGVASSLGKVGGMVCPLVAVGLVTSCHLRLAVI 323 (357)
Q Consensus 252 ~-------~~~~~~~~~~-~~~~~~~~~~~~~~~~~ElfPt~~R~~~~~~~~~~~~l~~~~~p~~~~~l~~~~~~~~~~~ 323 (357)
. ..+.....+. ...+..+..+++|.+.+|+||.++|+++.+++..++|+.++.....++.+.+..+....+.
T Consensus 386 ~~~~~~~~~~~~~~~~~~~v~~f~~g~g~v~w~~~sEifp~~~r~~~~s~~~~~n~~~~~~v~~~~~~~~~~~~~~~~f~ 465 (513)
T KOG0254|consen 386 YPNSSKGAGWLAIVFLCLFIFSFAIGWGPVPWVIVSEIFPLRLRSKGASLAVAVNWLWNFLISFFFPFITEALGIGGTFG 465 (513)
T ss_pred CCCcccchhHHHHHHHHHHHHHHhcccccchhhhhhccCcHhHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhccccchHH
Confidence 0 1111121111 2223345567899999999999999999999999999999888777776665533245678
Q ss_pred HHHHHHHHHHH-HHhhccccccCcchhhhHhhh
Q 018373 324 LFEVVFVLAIA-SSLLFPFETMGRELKDTVDAI 355 (357)
Q Consensus 324 ~~~~~~~~~~~-~~~~~~pet~~~~l~e~~~~~ 355 (357)
+|++.+.+..+ +++++.|||||+++||+-+..
T Consensus 466 ~f~~~~~~~~~~fv~~~~pETkg~sleei~~~~ 498 (513)
T KOG0254|consen 466 YFGGICLLSLIIFVFFFVPETKGLTLEEINELF 498 (513)
T ss_pred HHHHHHHHHHHHHheEEcccCCCCcHHHHHHHH
Confidence 88888888877 899999999999999886644
No 6
>TIGR00898 2A0119 cation transport protein.
Probab=100.00 E-value=7.9e-32 Score=261.37 Aligned_cols=288 Identities=32% Similarity=0.561 Sum_probs=202.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHhhHHHHHHHHHHhcCCCChHHHHHcCChHHHHHHHHHHHHHcC
Q 018373 19 GRWMVALSAFWTAGTIFEASLAWVVMTRLNWRWLLAFSSVPSFALLLFYGLAPESPRYLCAKARTVDAHRILEKMAFVNQ 98 (357)
Q Consensus 19 g~~~~~~~~~~~~G~l~~~~i~~~~~~~~~WR~~~~~~~~p~l~~~~~~~~lpESP~wL~~~g~~~~a~~~l~~l~~~~~ 98 (357)
++..++.+.++.+|.+++..+++.+. +||+.+.+.++|.++..+..+++||||+|+..|+|.+|+++.++++++.|+
T Consensus 215 ~~~~~~~~~~~~~g~~~~~~~~~~~~---~wr~~~~~~~i~~~~~~~~~~~~~esp~~l~~~~~~~~a~~~l~~~~~~~~ 291 (505)
T TIGR00898 215 AIVGTLIQVFFSLGLVLLPLVAYFIP---DWRWLQLAVSLPTFLFFLLSWFVPESPRWLISQGRIEEALKILQRIAKING 291 (505)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhh---HHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHCCCHHHHHHHHHHHHHHcC
Confidence 66777778888889888887776553 499999999999998888888999999999999999999999999988776
Q ss_pred CCCCCCcccchhhhhhhhhhhhhhcchhhhhhhhhhhhhccchhhhhhhcch-hhHHHHHHHHHHHHHHHHHHHHHHHHh
Q 018373 99 TKLPPGILVSDKAIKENEESNLLRDTHMLSMTRKITDKLKSGFSSFFMLFSR-KLIRTTLLLWVLFFANVFSYYGAVLLT 177 (357)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~~~~~~~~~~~~y~~~~~~ 177 (357)
.+.+.+ ..+...++ .. ..+++...+++++++ +.++.++..+..++...+.||+...+.
T Consensus 292 ~~~~~~--------~~~~~~~~-----------~~--~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 350 (505)
T TIGR00898 292 KKLPAE--------VLSLSLEK-----------DL--SSSKKQYSFLDLFRTPNLRKTTLCLMMLWFTTAFSYYGLVLDL 350 (505)
T ss_pred CCCCHH--------HHhhhhhh-----------hh--hhccCCCcHHHHhCChHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 432110 00000000 00 000011245566654 445555555666777777777776554
Q ss_pred hhhcCCCCCCCcccccCCCCCchhhHHHHHHHHhhhhhHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHhh-hhh-HH
Q 018373 178 SKLSSGDNKCGSKVLHADKSKDNSLYVDVFIASLAELPGLILSAIIVDKIGRKLSMVLMFVSACIFLLPLVFH-QSA-VV 255 (357)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~d~~GRR~~~~~~~~~~~i~~~~~~~~-~~~-~~ 255 (357)
+.+. .+.+...++.++.++++.++.+++.||+|||+.+.++.+++++..+.+... ... ..
T Consensus 351 ~~~~------------------~~~~~~~~~~~~~~i~~~~~~~~l~dr~grr~~~~~~~~~~~~~~l~~~~~~~~~~~~ 412 (505)
T TIGR00898 351 GNLG------------------GNIYLDLFISGLVELPAKLITLLLIDRLGRRYTMAASLLLAGVALLLLLFVPVDLYFL 412 (505)
T ss_pred cccC------------------CChHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHcCCCchHH
Confidence 4221 112444456678889999999999999999999988887776665554432 221 22
Q ss_pred HHHHHHHHHHHhhhhhhhhhhhccccccCcchhhHHHHHHHHHHHHHhHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHH
Q 018373 256 TTVLLFGVRMCVTGTITVATIYAPEIYPTSARTTGFGVASSLGKVGGMVCPLVAVGLVTSCHLRLAVILFEVVFVLAIAS 335 (357)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~~~~~~ElfPt~~R~~~~~~~~~~~~l~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 335 (357)
.....+...++..+.++..+.+.+|+||++.|+++.|+++.+++++++++|++.. + ...+...++++++++.+++.+.
T Consensus 413 ~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~ig~~i~p~i~~-~-~~~~~~~~~~~~~~~~~~~~~~ 490 (505)
T TIGR00898 413 RTALAVLGKFGITSAFQMVYLYTAELYPTVVRNLGVGVCSTMARVGSIISPFLVY-L-GEKWLFLPLVLFGGLALLAGIL 490 (505)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcccccHHHHhhhHhHHHHHHHHHHHHHhHHHH-H-HHHHHhhHHHHHHHHHHHHHHH
Confidence 2222333334444556788999999999999999999999999999999999887 3 3334456777888777777666
Q ss_pred HhhccccccCcchhhh
Q 018373 336 SLLFPFETMGRELKDT 351 (357)
Q Consensus 336 ~~~~~pet~~~~l~e~ 351 (357)
.+ +.|||++++++|+
T Consensus 491 ~~-~lpet~~~~l~~t 505 (505)
T TIGR00898 491 TL-FLPETKGVPLPET 505 (505)
T ss_pred HH-cCcCCCCCCCCCC
Confidence 54 4689999999885
No 7
>PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters. Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane
Probab=100.00 E-value=2.5e-38 Score=302.52 Aligned_cols=299 Identities=25% Similarity=0.420 Sum_probs=199.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhc---CcchHHHHHHhhHHHHHHHHHHhcCCCChHHHHHcCChHHHHHHHHHHHH
Q 018373 19 GRWMVALSAFWTAGTIFEASLAWVVMT---RLNWRWLLAFSSVPSFALLLFYGLAPESPRYLCAKARTVDAHRILEKMAF 95 (357)
Q Consensus 19 g~~~~~~~~~~~~G~l~~~~i~~~~~~---~~~WR~~~~~~~~p~l~~~~~~~~lpESP~wL~~~g~~~~a~~~l~~l~~ 95 (357)
|+..++.+.++.+|.+++..+++.... .++||+.+.++++|+++.++.+.++|||||||.+|||.|||+++++|+++
T Consensus 137 ~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~Wr~~~~~~~~~~l~~~~~~~~~pESP~wL~~~~~~~~A~~~l~~~~~ 216 (451)
T PF00083_consen 137 GFLSSLFQLFWALGILLASLIGYIVSYYSDNWGWRILLIFGAIPSLLVLLLRFFLPESPRWLLSKGRDEEAEKVLRKLRG 216 (451)
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccceecccccccccccccccccc
Confidence 888899999999999998877765432 35699999999999999999999999999999999999999999998654
Q ss_pred HcCCCCCCCcccchhhhhhhhhhhhhhcchhhhhhhhhhhhhccchhhhhhhcch-hhHHHHHHHHHHHHHHHHHH-HHH
Q 018373 96 VNQTKLPPGILVSDKAIKENEESNLLRDTHMLSMTRKITDKLKSGFSSFFMLFSR-KLIRTTLLLWVLFFANVFSY-YGA 173 (357)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~~~~~~~~~~~~-y~~ 173 (357)
.+..+ ++.+++.++.+ + .++....+++++++ +++++.++...+...+.++. +..
T Consensus 217 ~~~~~-----------~~~~~~~~~~~---------~----~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 272 (451)
T PF00083_consen 217 KEIED-----------EEIEEIKAEKK---------E----SQESKASWRDLFRNKKYRKRLLIALLLQFFQQFSGINFI 272 (451)
T ss_pred ccccc-----------ccccccccccc---------c----ccccceeeeeccccccccccccccccccccccccccccc
Confidence 32110 01111110000 0 00001245566654 34555554444433333322 222
Q ss_pred HHHhhhhcCCCCCCCcccccCCCCCchhhHHHHHHHHhhhhhHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHH---h-
Q 018373 174 VLLTSKLSSGDNKCGSKVLHADKSKDNSLYVDVFIASLAELPGLILSAIIVDKIGRKLSMVLMFVSACIFLLPLV---F- 249 (357)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~d~~GRR~~~~~~~~~~~i~~~~~~---~- 249 (357)
..+.+.+..... .. .+ +....+..+...++.+++.+++||+|||+.++.+..+++++...+. .
T Consensus 273 ~~~~~~i~~~~~-----------~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~GRr~~~i~~~~~~~~~~~~~~~~~~~ 339 (451)
T PF00083_consen 273 FYYSPSIFENAG-----------IS-NS-FLATLILGLVNFLGTLLAIFLIDRFGRRKLLIIGLLLMAICSLILGIIFFL 339 (451)
T ss_pred cccccccccccc-----------cc-cc-ccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 333333322110 11 11 2222345566778888888999999999999888777665554442 1
Q ss_pred -hhh----hHHHHHHHHHH-HHHhhhhhhhhhhhccccccCcchhhHHHHHHHHHHHHHhHHHHHHHHHHhhcchhhHHH
Q 018373 250 -HQS----AVVTTVLLFGV-RMCVTGTITVATIYAPEIYPTSARTTGFGVASSLGKVGGMVCPLVAVGLVTSCHLRLAVI 323 (357)
Q Consensus 250 -~~~----~~~~~~~~~~~-~~~~~~~~~~~~~~~~ElfPt~~R~~~~~~~~~~~~l~~~~~p~~~~~l~~~~~~~~~~~ 323 (357)
.+. ......+.... ..+..+..+..|.+.+|+||+++|+++.|+++.++++++++.|++.+++.+..+....+.
T Consensus 340 ~~~~~~~~~~~~i~~~~l~~~~~~~g~~~~~~~~~~ElfPt~~R~~~~~~~~~~~~i~~~i~~~~~~~~~~~~~~~~~~~ 419 (451)
T PF00083_consen 340 GVSSSSWWSILSIVFLALFFAFFSLGWGPLPWIYTAELFPTKVRSTGIGLSYAVGRIGGFIIPFLFPYLFNNLGGWGVFL 419 (451)
T ss_pred ccccccccccccceeeeeccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccch
Confidence 122 11111111111 122234556788999999999999999999999999999999998887766554356678
Q ss_pred HHHHHHHHHHHHHhhccccccCcchhhhHhh
Q 018373 324 LFEVVFVLAIASSLLFPFETMGRELKDTVDA 354 (357)
Q Consensus 324 ~~~~~~~~~~~~~~~~~pet~~~~l~e~~~~ 354 (357)
+++++++++.++.++++||||||++||+-++
T Consensus 420 i~~~~~~i~~i~~~~~lpET~g~~l~ei~~~ 450 (451)
T PF00083_consen 420 IFAGVCLIAIIFVYFFLPETKGKTLEEIQEM 450 (451)
T ss_pred hhHHHHHHHHhheeEEEeeCCCCCHHHHHhh
Confidence 8888989999999999999999999997653
No 8
>KOG0255 consensus Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily) [General function prediction only]
Probab=100.00 E-value=2.7e-30 Score=251.53 Aligned_cols=316 Identities=30% Similarity=0.451 Sum_probs=227.9
Q ss_pred ccccchhhhhhcccccc---------------------------------------------------------hhHHHH
Q 018373 2 LLGAYSWGIISDNYGRR---------------------------------------------------------GRWMVA 24 (357)
Q Consensus 2 ~~ga~~~g~~~d~~grr---------------------------------------------------------g~~~~~ 24 (357)
++|++++|+++|++||| +...++
T Consensus 132 ~vG~~i~g~lsD~~GRk~~~~~~~~~~~i~~~~~a~a~~~~~~~~~Rfl~G~~~~~~~~~~~~~~~E~~~~~~R~~~~~~ 211 (521)
T KOG0255|consen 132 LVGSLIFGPLSDRFGRKPVLLVSLLLFIIFGILTAFAPNYWMFLIFRFLSGFFGSGPLTVGFGLVAEIVSPKQRGLALTL 211 (521)
T ss_pred HHHHhhheehHhhcccHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhccchhHHhHhhheeecCcchhhHHHHH
Confidence 68999999999999999 556666
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCcchHHHHHHhhHHHHHHHHHHhcCCCChHHHHHcCChHHHHHHHHHHHHHcCCCCCCC
Q 018373 25 LSAFWTAGTIFEASLAWVVMTRLNWRWLLAFSSVPSFALLLFYGLAPESPRYLCAKARTVDAHRILEKMAFVNQTKLPPG 104 (357)
Q Consensus 25 ~~~~~~~G~l~~~~i~~~~~~~~~WR~~~~~~~~p~l~~~~~~~~lpESP~wL~~~g~~~~a~~~l~~l~~~~~~~~~~~ 104 (357)
....+..|.+..+..++... +||+.+++..+|.++.++..+..||||||+..|||.+||.++++++++.|+++....
T Consensus 212 ~~~~~~~~~~~~~~~a~~~~---~Wr~~~~~~~~~~~~~~~~~~l~~Es~rwl~~~g~~~~a~~~l~~~a~~n~~~~~~~ 288 (521)
T KOG0255|consen 212 GGFFFVGGLMLPAGAAYITR---DWRWLFWIISIPSGLFLLLWFLPPESPRWLLSKGRIDEAIKILKKIAKLNGRKLSVK 288 (521)
T ss_pred HHHHHHHHHHHHHHHHHHHh---hHHHHHHHHHHHHHHHHHHHHccCcChHHHHHcCchHHHHHHHHHHHhhcCCCCCcH
Confidence 56677777777766666553 999999999999999888877788999999999999999999999998874432111
Q ss_pred cccchhhhhhhhhhhhhhcchhhhhhhhhhhhhccchhhhhhhcchh-hHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCC
Q 018373 105 ILVSDKAIKENEESNLLRDTHMLSMTRKITDKLKSGFSSFFMLFSRK-LIRTTLLLWVLFFANVFSYYGAVLLTSKLSSG 183 (357)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~ 183 (357)
. ..+...... .......++...+.++++.+ .+++++.+.+.++.....||+..+....+.
T Consensus 289 ~-------~~~~~~~~~----------~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~~y~gl~~~~~~lg-- 349 (521)
T KOG0255|consen 289 E-------LLRLELLLR----------PLKLLFTEPKISFLDLFRTPRLRYRTLYLLFIWFVFSLVYYGLSLNVSGLG-- 349 (521)
T ss_pred H-------HHHHHHHhh----------HhhhhccCCCCchhhhhcCHHHHHHHHHHHHHHHHHhHHHHhhhhhhhhcC--
Confidence 1 111100000 00000111112356666544 677788888888888888999876544221
Q ss_pred CCCCCcccccCCCCCchhhHHHHHHHHhhhhhHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHh-hhhhH--HHHHHH
Q 018373 184 DNKCGSKVLHADKSKDNSLYVDVFIASLAELPGLILSAIIVDKIGRKLSMVLMFVSACIFLLPLVF-HQSAV--VTTVLL 260 (357)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~d~~GRR~~~~~~~~~~~i~~~~~~~-~~~~~--~~~~~~ 260 (357)
.+.+.+..+.+....++....+...|++|||.....+.+...+..+...+ ..... +..+..
T Consensus 350 ----------------~~~~~~~~~~~~~~~p~~~~~~~~~~~~gR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 413 (521)
T KOG0255|consen 350 ----------------GNIYLNFTLSGLVELPAYFRNGLLLPEFGRRPPLFLSLFLAGIGLLLFGWLPDDLGGWLHWILP 413 (521)
T ss_pred ----------------chHHHHHHHHHHHHhhHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHH
Confidence 23455556666688899999999999999999999888877776665554 21111 222333
Q ss_pred HHHHHHhhhhhhhhhhhccccccCcchhhHHHHHHHHHHHHHhHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHHhhcc
Q 018373 261 FGVRMCVTGTITVATIYAPEIYPTSARTTGFGVASSLGKVGGMVCPLVAVGLVTSCHLRLAVILFEVVFVLAIASSLLFP 340 (357)
Q Consensus 261 ~~~~~~~~~~~~~~~~~~~ElfPt~~R~~~~~~~~~~~~l~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 340 (357)
....++....+...+.+.+|++||.+|.++.+.+..+++++++++|++...... .....++.+++....+...+..++.
T Consensus 414 ~~~~~~~~~~~~~~~~~~~el~pt~~r~~~~~~~~~~~~~~~i~ap~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~~l 492 (521)
T KOG0255|consen 414 LLGKFFIGSAFNLIFLYSAELIPTVVRNTAVGAISAAARLGSILAPLFPLLLRQ-MFPLLGLILFGWLALLLGLLSLLLL 492 (521)
T ss_pred HHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-hcccchHHHHHHHHHHHHHHHHhcC
Confidence 334444455566779999999999999999999999999999999988653332 3333344446777777777787888
Q ss_pred ccccCcchhhhHhhhh
Q 018373 341 FETMGRELKDTVDAIE 356 (357)
Q Consensus 341 pet~~~~l~e~~~~~~ 356 (357)
|||+++++.|+++|.|
T Consensus 493 pet~~~~l~~t~~~~~ 508 (521)
T KOG0255|consen 493 PETKGKPLPGTLLDAE 508 (521)
T ss_pred cccCCCCCchhHHHHH
Confidence 9999999999999987
No 9
>KOG0252 consensus Inorganic phosphate transporter [Inorganic ion transport and metabolism]
Probab=99.97 E-value=1.3e-30 Score=235.52 Aligned_cols=304 Identities=23% Similarity=0.291 Sum_probs=201.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHh-------cC--------cchHHHHHHhhHHHHHHHHHHhcCCCChHHHHHcC-C
Q 018373 19 GRWMVALSAFWTAGTIFEASLAWVVM-------TR--------LNWRWLLAFSSVPSFALLLFYGLAPESPRYLCAKA-R 82 (357)
Q Consensus 19 g~~~~~~~~~~~~G~l~~~~i~~~~~-------~~--------~~WR~~~~~~~~p~l~~~~~~~~lpESP~wL~~~g-~ 82 (357)
|...+.+...+..|.+.+..++.++. +. .-||+.+.++++|+++.++.|..||||+||-.... |
T Consensus 179 Ga~iaavFa~Qg~GilaG~ivt~Iv~~~fe~~~~~~~~~~~ld~vWRl~~glg~vpa~~~ly~Rl~M~Et~~Y~al~~~~ 258 (538)
T KOG0252|consen 179 GAFIAAVFAMQGFGILAGGIVALIVSAIFEKIFNGPSTYPHLDGVWRIIFGLGAVPALLVLYFRLKMPETARYTALVSKK 258 (538)
T ss_pred cceeEEEEEecchhHhhccHHHHHHHHHHhccCCCCCCchHHHHHHHHHHHHHHHHHHHHHHhhhcCCcchhHHHHhhcC
Confidence 66666666666666666665554421 11 13999999999999999999999999999985433 3
Q ss_pred hHHHHHHHHHHHHHcCCCCCCCcccchhhhhhhhhhhhhhcchhhhhhhhhhhhhccchhhhhhhcchhhHHHHHHHHHH
Q 018373 83 TVDAHRILEKMAFVNQTKLPPGILVSDKAIKENEESNLLRDTHMLSMTRKITDKLKSGFSSFFMLFSRKLIRTTLLLWVL 162 (357)
Q Consensus 83 ~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 162 (357)
.+.|.+ +.++..+. ++++++... .+.. ..++....+..+|.+.+-++.+.....
T Consensus 259 ~~~a~~--------d~~k~~~~--------~~~~~~~~~--------~~~~--~~~~~~~~F~~~f~~~hg~~Llgt~~~ 312 (538)
T KOG0252|consen 259 LKQAAG--------DMKKVLSV--------DIEAESTAE--------SDVP--PPSNSFGLFSRLFLRWHGKHLLGTAGT 312 (538)
T ss_pred Hhhhhh--------cccccccc--------ccchhhccc--------cCCC--CcccccchHHHHHHHHHHHHHHHHHHH
Confidence 333321 11111111 111110000 0000 000011123333433355777778888
Q ss_pred HHHHHHHHHHHHHHhhhhcCCCCCCCcccccCCCCCch----hhHHHHHHHHhhhhhHHHHHHHHHHhhchhHHHHHHHH
Q 018373 163 FFANVFSYYGAVLLTSKLSSGDNKCGSKVLHADKSKDN----SLYVDVFIASLAELPGLILSAIIVDKIGRKLSMVLMFV 238 (357)
Q Consensus 163 ~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~i~~~~~~~~~~~~~~l~d~~GRR~~~~~~~~ 238 (357)
||...+.+|+..++++.+.+..+..+. ..... ....+.++..+..++|+.++.+++|++|||+..+.+++
T Consensus 313 WFllDiafy~~nL~~s~I~~~ig~~~~------~~~~~~~~~vA~~~~iia~~~~vPGyw~tv~~id~iGRk~iq~~GF~ 386 (538)
T KOG0252|consen 313 WFLLDIAFYGQNLFQSVIFSAIGVIPS------ANTYHELFKVAEGNLIIAVCSTVPGYWFTVYFIDIIGRKYIQLMGFF 386 (538)
T ss_pred HHhhhhhhhccccHHHHHHHhhccCCC------cchHHHHHHHHHHHHHHHHHccCCceeEEEEEeehhhhHHHHHhhHH
Confidence 999999999998888776532211110 11100 11244566677778899999999999999999999999
Q ss_pred HHHHHHHHHHhhhhh----HHHHHHHH-HHHHHhhhhhhhhhhhccccccCcchhhHHHHHHHHHHHHHhHHHHHHHHHH
Q 018373 239 SACIFLLPLVFHQSA----VVTTVLLF-GVRMCVTGTITVATIYAPEIYPTSARTTGFGVASSLGKVGGMVCPLVAVGLV 313 (357)
Q Consensus 239 ~~~i~~~~~~~~~~~----~~~~~~~~-~~~~~~~~~~~~~~~~~~ElfPt~~R~~~~~~~~~~~~l~~~~~p~~~~~l~ 313 (357)
++.++.+.+....+. ....+++. ...+...|+.+...++.+|.||+++|+++.|++.++|..+++++.+.+.++.
T Consensus 387 ~~~i~~~~~~~~y~~~~~~~Gf~v~y~l~~ff~NFGPn~ttfivpaE~FParvR~t~hGIsAA~GK~GAivg~~~F~~~t 466 (538)
T KOG0252|consen 387 IMTIFFFVIAGPYNQLENTIGFVVLYSLTFFFGNFGPNATTFIVPAEIFPARVRSTCHGISAASGKAGAIVGAFGFLYLT 466 (538)
T ss_pred HHHHHHHHHcCCcccccccCceeehHHHHHHHHhcCCCceeEEeehhhchHHHhhhhhhHHHHhccchHHHHHHHhhHhh
Confidence 999988887753321 11122222 2234456788889999999999999999999999999999999999998888
Q ss_pred h-----hcchhhHHHHHHHHHHHHHHHHhhccccccCcchhhhHhhh
Q 018373 314 T-----SCHLRLAVILFEVVFVLAIASSLLFPFETMGRELKDTVDAI 355 (357)
Q Consensus 314 ~-----~~~~~~~~~~~~~~~~~~~~~~~~~~pet~~~~l~e~~~~~ 355 (357)
+ ..+....+++++.++++..++++++ ||||+|++||+=++.
T Consensus 467 ~~~yp~~~g~~~v~~i~~~~~~~gi~~T~l~-pEtk~~~leei~~e~ 512 (538)
T KOG0252|consen 467 DHNYPPNIGVRNVFIILAGCMLLGILFTLLI-PETKGKSLEEISNEE 512 (538)
T ss_pred hccCCccccchHHHHHHHHHHHHhHheeEEe-ecccccCHHHhcChh
Confidence 7 5555667888888888887777665 699999999984443
No 10
>PRK10077 xylE D-xylose transporter XylE; Provisional
Probab=99.96 E-value=1.5e-26 Score=222.86 Aligned_cols=298 Identities=17% Similarity=0.217 Sum_probs=173.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHh--------cCcchHHHHHHhhHHHHHHHHHHhcCCCChHHHHHcCChHHHHHHH
Q 018373 19 GRWMVALSAFWTAGTIFEASLAWVVM--------TRLNWRWLLAFSSVPSFALLLFYGLAPESPRYLCAKARTVDAHRIL 90 (357)
Q Consensus 19 g~~~~~~~~~~~~G~l~~~~i~~~~~--------~~~~WR~~~~~~~~p~l~~~~~~~~lpESP~wL~~~g~~~~a~~~l 90 (357)
|+.++..+.+..+|.+++..++.... ..++||++|.+.+++.++..+..+++||||+|+..+++.+++++.+
T Consensus 155 g~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~gWr~~f~~~~~~~~~~~~~~~~l~~s~~~l~~~~~~~~~~~~~ 234 (479)
T PRK10077 155 GKLVSFNQFAIIFGQLVVYFVNYFIARSGDASWLNTDGWRYMFASEAIPALLFLMLLYFVPETPRYLMSRGKQEQAEGIL 234 (479)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhccCcccccccCChHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHcCCHHHHHHHH
Confidence 44555555555555555544433221 2468999999999998888888889999999999899999888777
Q ss_pred HHHHHHcCCCCCCCcccchhhhhhhhhhhhhhcchhhhhhhhhhhhhccchhhhhhhcchhhHHHHHHH-H-HHHHHHHH
Q 018373 91 EKMAFVNQTKLPPGILVSDKAIKENEESNLLRDTHMLSMTRKITDKLKSGFSSFFMLFSRKLIRTTLLL-W-VLFFANVF 168 (357)
Q Consensus 91 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-~-~~~~~~~~ 168 (357)
+++++.+ + .....++... ..+ ...+ .....+. .....+.. . ...+.+..
T Consensus 235 ~~~~~~~-------~----~~~~~~~~~~------~~~------~~~~----~~~~~~~--~~~~~~~~~~~~~~~~~~~ 285 (479)
T PRK10077 235 RKIMGNT-------L----ATQALQEIKH------SLD------HGRK----TGGKLLM--FGVGVIVIGVMLSVFQQFV 285 (479)
T ss_pred HHHcCCh-------h----HHHHHHHHHH------HHH------Hhhh----hhhhhcc--hhHHHHHHHHHHHHHHHHh
Confidence 7653210 0 0001111000 000 0000 0001111 11111111 1 11112222
Q ss_pred HHHHHHHHhhhhcCCCCCCCcccccCCCCCchhhHHHHHHHHhhhhhHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHH
Q 018373 169 SYYGAVLLTSKLSSGDNKCGSKVLHADKSKDNSLYVDVFIASLAELPGLILSAIIVDKIGRKLSMVLMFVSACIFLLPLV 248 (357)
Q Consensus 169 ~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~d~~GRR~~~~~~~~~~~i~~~~~~ 248 (357)
.++....+.|.+.+..+ ...+.. .......++..+++.++++++.||+|||+.++.+..++.+..+.+.
T Consensus 286 ~~~~~~~~~p~i~~~~g----------~~~~~~-~~~~~~~~~~~~i~~~~~g~l~dr~g~r~~~i~~~~~~~v~~~~l~ 354 (479)
T PRK10077 286 GINVVLYYAPEIFKTLG----------ASTDIA-LLQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLG 354 (479)
T ss_pred ChhHHHHHHHHHHHHcC----------CCCchH-HHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHhHHHHHHHHHHHH
Confidence 23333334444321110 111111 2233445677888999999999999999999888776666544433
Q ss_pred h--h-hhhHHHH-HHHHHHHH-HhhhhhhhhhhhccccccCcchhhHHHHHHHHHHHHHhHHHHHHHHHH------hhcc
Q 018373 249 F--H-QSAVVTT-VLLFGVRM-CVTGTITVATIYAPEIYPTSARTTGFGVASSLGKVGGMVCPLVAVGLV------TSCH 317 (357)
Q Consensus 249 ~--~-~~~~~~~-~~~~~~~~-~~~~~~~~~~~~~~ElfPt~~R~~~~~~~~~~~~l~~~~~p~~~~~l~------~~~~ 317 (357)
. . ....... ...+...+ +.....+..+.+.+|+||++.|+++.|++++++++++++++++++.+. +..+
T Consensus 355 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~g~~~~~~~~p~~~~~~~~~~~~~ 434 (479)
T PRK10077 355 TAFYTQAPGIVALLSMLFYVAAFAMSWGPVCWVLLSEIFPNAIRGKALAIAVAAQWIANYFVSWTFPMMDKNSWLVAHFH 434 (479)
T ss_pred HHHhcCcccHHHHHHHHHHHHHHhccccchhHHHhHhhCChhHHHHHHHHHHHHHHHHHHHHHHHhHHHHhccchhhhcc
Confidence 2 1 1111111 11111111 111122567899999999999999999999999999999988876544 2334
Q ss_pred hhhHHHHHHHHHHHHHHHHhhccccccCcchhhhHhhhh
Q 018373 318 LRLAVILFEVVFVLAIASSLLFPFETMGRELKDTVDAIE 356 (357)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~~~~~pet~~~~l~e~~~~~~ 356 (357)
....++++++.+++++++.+++.||||++++||.-+..|
T Consensus 435 ~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~ 473 (479)
T PRK10077 435 NGFSYWIYGCMGVLAALFMWKFVPETKGKTLEEMEALWE 473 (479)
T ss_pred CccHHHHHHHHHHHHHHHHHhccccCCCCCHHHHHHHHh
Confidence 455677888888888888888899999999988755443
No 11
>PRK10642 proline/glycine betaine transporter; Provisional
Probab=99.95 E-value=3.8e-26 Score=220.65 Aligned_cols=274 Identities=19% Similarity=0.218 Sum_probs=160.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHH--------hcCcchHHHHHHhhHHHHHHHHHHhcCCCChHHHHHcCChHHHHHHH
Q 018373 19 GRWMVALSAFWTAGTIFEASLAWVV--------MTRLNWRWLLAFSSVPSFALLLFYGLAPESPRYLCAKARTVDAHRIL 90 (357)
Q Consensus 19 g~~~~~~~~~~~~G~l~~~~i~~~~--------~~~~~WR~~~~~~~~p~l~~~~~~~~lpESP~wL~~~g~~~~a~~~l 90 (357)
|+..++.+.+..+|.+++..+...+ .+.++||++|.+++++.++.++.+.++||||+|+..+++.++..
T Consensus 153 g~~~~~~~~~~~~G~~lg~~~~~~~~~~~~~~~~~~~gWR~~f~i~~~~~l~~~~~~~~~~esp~~~~~~~~~~~~~--- 229 (490)
T PRK10642 153 GFMGSWLDFGSIAGFVLGAGVVVLISTIVGEANFLDWGWRIPFFIALPLGIIGLYLRHALEETPAFQQHVDKLEQGD--- 229 (490)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHhcCccHHHHHHHHHHHHHHHHHHHHcCCCChhHHHHHHhhhhhc---
Confidence 6667777777777777666544322 13689999999999888888888889999999975433221110
Q ss_pred HHHHHHcCCCCCCCcccchhhhhhhhhhhhhhcchhhhhhhhhhhhhccchhhhhhhcchhhHHHHHHHHHHHHHHHHHH
Q 018373 91 EKMAFVNQTKLPPGILVSDKAIKENEESNLLRDTHMLSMTRKITDKLKSGFSSFFMLFSRKLIRTTLLLWVLFFANVFSY 170 (357)
Q Consensus 91 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 170 (357)
.++ . ++ .+..++++++++ +++.........+.....+
T Consensus 230 -------~~~-----~--------~~----------------------~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 266 (490)
T PRK10642 230 -------REG-----L--------QD----------------------GPKVSFKEIATK-HWRSLLTCIGLVIATNVTY 266 (490)
T ss_pred -------ccc-----c--------cc----------------------cccCCHHHHHHH-hHHHHHHHHHHHHHHHHHH
Confidence 000 0 00 000123334433 3344444444444455667
Q ss_pred HHHHHHhhhhcCCCCCCCcccccCCCCCchhhHHHHHHHHhhhhhHHHHHHHHHHhhchhHHHHHHHHHHHHHHHH-HHh
Q 018373 171 YGAVLLTSKLSSGDNKCGSKVLHADKSKDNSLYVDVFIASLAELPGLILSAIIVDKIGRKLSMVLMFVSACIFLLP-LVF 249 (357)
Q Consensus 171 y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~d~~GRR~~~~~~~~~~~i~~~~-~~~ 249 (357)
|+...+.|.+.... .+ ...... ........++..++.++.+++.||+|||+.+..+.++..+.... +..
T Consensus 267 ~~~~~~~p~~l~~~-------~g--~s~~~~-~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~ 336 (490)
T PRK10642 267 YMLLTYMPSYLSHN-------LH--YSEDHG-VLIIIAIMIGMLFVQPVMGLLSDRFGRRPFVILGSVALFVLAIPAFIL 336 (490)
T ss_pred HHHHHHHHHHHHHh-------cC--CCHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHH
Confidence 77777776543211 00 111111 22233445667788889999999999999887665543322222 111
Q ss_pred -hh-hhHHHHHHHHHHHHHhhhhhhhhhhhccccccCcchhhHHHHHHHHHHHHHhHHHHHHHHHHhhcc-hhhHHHHHH
Q 018373 250 -HQ-SAVVTTVLLFGVRMCVTGTITVATIYAPEIYPTSARTTGFGVASSLGKVGGMVCPLVAVGLVTSCH-LRLAVILFE 326 (357)
Q Consensus 250 -~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ElfPt~~R~~~~~~~~~~~~l~~~~~p~~~~~l~~~~~-~~~~~~~~~ 326 (357)
.. +........+...++.....+..+.+.+|+||++.|+++.|++++++++++.++|++..++.+..+ ...+.++..
T Consensus 337 ~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~~~~~~p~~~Rg~~~g~~~~~~~~~g~~~p~i~g~l~~~~~~~~~~~~~~~ 416 (490)
T PRK10642 337 INSNVIGLIFAGLLMLAVILNCFTGVMASTLPAMFPTHIRYSALAAAFNISVLVAGLTPTLAAWLVESTQNLMMPAYYLM 416 (490)
T ss_pred HhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHH
Confidence 11 111111111112222223345667788999999999999999999999989999999888776543 233444445
Q ss_pred HHHHHHHHHHhhccccccCcchh
Q 018373 327 VVFVLAIASSLLFPFETMGRELK 349 (357)
Q Consensus 327 ~~~~~~~~~~~~~~pet~~~~l~ 349 (357)
+.++++.+..+ +.|||+++.++
T Consensus 417 ~~~~i~~~~~~-~~pes~~~~~~ 438 (490)
T PRK10642 417 VVAVIGLITGV-TMKETANRPLK 438 (490)
T ss_pred HHHHHHHHHHH-HhccccCCCCC
Confidence 55555545444 46999887664
No 12
>TIGR00879 SP MFS transporter, sugar porter (SP) family. This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083)
Probab=99.94 E-value=2.8e-24 Score=205.99 Aligned_cols=304 Identities=19% Similarity=0.252 Sum_probs=181.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHH---HHHhcCcchHHHHHHhhHHHHHHHHHHhcCCCChHHHHHcCChHHHHHHHHHHHH
Q 018373 19 GRWMVALSAFWTAGTIFEASLA---WVVMTRLNWRWLLAFSSVPSFALLLFYGLAPESPRYLCAKARTVDAHRILEKMAF 95 (357)
Q Consensus 19 g~~~~~~~~~~~~G~l~~~~i~---~~~~~~~~WR~~~~~~~~p~l~~~~~~~~lpESP~wL~~~g~~~~a~~~l~~l~~ 95 (357)
|+..+..+.+..+|..++..++ .......+||+.|.+..++.++..+..+++||+|+|+..+++.+++.+.+++.++
T Consensus 162 ~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~w~~~f~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (481)
T TIGR00879 162 GALTSLYQLAITFGILVAYGFGSGKVSLNNTLGWRIPLGLQLIPAGLLFLGLFFLPESPRWLVGKGRVEEARKSLARLRG 241 (481)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHhhcCCCCccHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHcCChHHHHHHHHHHhC
Confidence 7777888888888888888776 3333567999999998888888888888999999999888888887766655432
Q ss_pred HcCCCCCCCcccchhhhhhhhhhhhhhcchhhhhhhhhhhhhccchhhhhhhcchhhHHHHHHH-HHHHHHHHHHHHHHH
Q 018373 96 VNQTKLPPGILVSDKAIKENEESNLLRDTHMLSMTRKITDKLKSGFSSFFMLFSRKLIRTTLLL-WVLFFANVFSYYGAV 174 (357)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-~~~~~~~~~~~y~~~ 174 (357)
.+.+ . .+..++.+..+. ..+.+.+..+......+..+++ ..++.... .+.++.....++...
T Consensus 242 ~~~~-----~--~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 304 (481)
T TIGR00879 242 TSGE-----D--KELLDELELIDI---------KRSIEKRSVQPSWGSLFSSTRR-IRRRLFLGVVLQWFQQFTGINAIM 304 (481)
T ss_pred CCCC-----c--HHHHHHHHHHHH---------HHHHHHhhccccHHHHHhcCch-hHHHHHHHHHHHHHHHHhCCeehH
Confidence 2110 0 000000000000 0000000001111122222222 22222222 222222222222223
Q ss_pred HHhhhhcCCCCCCCcccccCCCCCchhhHHHHHHHHhhhhhHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHH---h--
Q 018373 175 LLTSKLSSGDNKCGSKVLHADKSKDNSLYVDVFIASLAELPGLILSAIIVDKIGRKLSMVLMFVSACIFLLPLV---F-- 249 (357)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~d~~GRR~~~~~~~~~~~i~~~~~~---~-- 249 (357)
.+.+.+.+..+ .+. ... .....+..++.+++.++.+++.||+|||+.+..+..+..+.++.+. .
T Consensus 305 ~~~~~~~~~~g---------~~~-~~~-~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 373 (481)
T TIGR00879 305 YYSPTIFENAG---------VST-DHA-FLVSIIVGAVNFAFTFVAIFLVDRFGRRPLLLIGAAGMAICLFVLGILGASF 373 (481)
T ss_pred HHHHHHHHHcC---------CCc-hHH-HHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 33333321110 011 111 2223445667788999999999999999998877665555444333 1
Q ss_pred hhh-----hHHHHHHH-HHHHHHhhhhhhhhhhhccccccCcchhhHHHHHHHHHHHHHhHHHHHHHHHHhhcchhhHHH
Q 018373 250 HQS-----AVVTTVLL-FGVRMCVTGTITVATIYAPEIYPTSARTTGFGVASSLGKVGGMVCPLVAVGLVTSCHLRLAVI 323 (357)
Q Consensus 250 ~~~-----~~~~~~~~-~~~~~~~~~~~~~~~~~~~ElfPt~~R~~~~~~~~~~~~l~~~~~p~~~~~l~~~~~~~~~~~ 323 (357)
... ........ ....++..+..+..+.+.+|.+|++.|+++.|+.+.+.+++++++|.+.+.+.+..+....++
T Consensus 374 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~lg~~i~~~~~~~~~~~~~~~~~f~ 453 (481)
T TIGR00879 374 VTGSSKSSGNVAIVFILLFIAFFAMGWGPVPWVIVSEIFPLSLRPKGISIAVAANWLANFIVGFLFPTMLESIGVGGVFI 453 (481)
T ss_pred cCCcccchhHHHHHHHHHHHHHHHccccCeehhhhhccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccceeh
Confidence 111 11111111 111112223335667888999999999999999999999999999999888877666666677
Q ss_pred HHHHHHHHHHHHHhhccccccCcchhh
Q 018373 324 LFEVVFVLAIASSLLFPFETMGRELKD 350 (357)
Q Consensus 324 ~~~~~~~~~~~~~~~~~pet~~~~l~e 350 (357)
+++++++++.++.+++.||||+++++|
T Consensus 454 ~~~~~~~~~~i~~~~~~~~~~~~~~~~ 480 (481)
T TIGR00879 454 FFGGLNVLGLIFVYFFLPETKGRTLEE 480 (481)
T ss_pred hHHHHHHHHHHHHheecccCCCCChhh
Confidence 888888888888888889999998765
No 13
>PRK09952 shikimate transporter; Provisional
Probab=99.92 E-value=8.9e-23 Score=194.46 Aligned_cols=262 Identities=16% Similarity=0.188 Sum_probs=148.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHh--------cCcchHHHHHHhhHHHHHHHHHHhcCCCChHHHHHcCChHHHHHHH
Q 018373 19 GRWMVALSAFWTAGTIFEASLAWVVM--------TRLNWRWLLAFSSVPSFALLLFYGLAPESPRYLCAKARTVDAHRIL 90 (357)
Q Consensus 19 g~~~~~~~~~~~~G~l~~~~i~~~~~--------~~~~WR~~~~~~~~p~l~~~~~~~~lpESP~wL~~~g~~~~a~~~l 90 (357)
|+..+..+.++.+|.+++..+...+. ..++||++|.++.++.++.++.+..+||||+|+..+++.++.+
T Consensus 160 g~~~~~~~~g~~~G~~l~~~~~~~l~~~~~~~~~~~~gWr~~f~~~~~~~l~~~~l~~~~~es~~~~~~~~~~~~~~--- 236 (438)
T PRK09952 160 AFYSSGVQVGYGVGLLLSTGLVSLISMMTTDEQFLSWGWRIPFLFSIVLVLIALWVRNGMEESAEFEQQQHEQAAAK--- 236 (438)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHhhccChHHHHHHHHHHHHHHHHHHHhCCCChhHHHHHhhccccc---
Confidence 66677777788888877755443221 2579999999999998888888889999999864432211100
Q ss_pred HHHHHHcCCCCCCCcccchhhhhhhhhhhhhhcchhhhhhhhhhhhhccchhhhhhhcchhhHHHHHHHHHHHHHHHHHH
Q 018373 91 EKMAFVNQTKLPPGILVSDKAIKENEESNLLRDTHMLSMTRKITDKLKSGFSSFFMLFSRKLIRTTLLLWVLFFANVFSY 170 (357)
Q Consensus 91 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 170 (357)
++ . ...+.++++ ++.........+...+.+
T Consensus 237 --------~~-----~-----------------------------------~~~~~l~~~--~~~~~~~~~~~~~~~~~~ 266 (438)
T PRK09952 237 --------KR-----I-----------------------------------PVIEALLRH--PGAFLKIIALRLCELLTM 266 (438)
T ss_pred --------cc-----C-----------------------------------CHHHHHHHc--hHHHHHHHHHHHHHHHHH
Confidence 00 0 000111111 111222222333344455
Q ss_pred HHHHHHhhhhcCCCCCCCcccccCCCCCchhhHHHHHHHHhhhhhHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHh-
Q 018373 171 YGAVLLTSKLSSGDNKCGSKVLHADKSKDNSLYVDVFIASLAELPGLILSAIIVDKIGRKLSMVLMFVSACIFLLPLVF- 249 (357)
Q Consensus 171 y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~d~~GRR~~~~~~~~~~~i~~~~~~~- 249 (357)
|....+.+.+.... . ..+.........+.++...++.++.+++.||+|||+.+..+.++..+....+..
T Consensus 267 ~~~~~~~~~y~~~~-------~---g~s~~~~~~~~~~~g~~~~i~~~~~g~l~Dr~grr~~~~~~~~~~~~~~~~~~~~ 336 (438)
T PRK09952 267 YIVTAFALNYSTQN-------L---GLPRELFLNIGLLVGGLSCLTIPCFAWLADRFGRRRVYITGALIGTLSAFPFFMA 336 (438)
T ss_pred HHHHHHHHHHHHHh-------c---CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHH
Confidence 55554444332110 0 011111111122345566778889999999999999888766554443332222
Q ss_pred --hhhhHHHHH-HHHHHHHHhhhhhhhhhhhccccccCcchhhHHHHHHHHHH-HHHhHHHHHHHHHHhhcc--hhhHHH
Q 018373 250 --HQSAVVTTV-LLFGVRMCVTGTITVATIYAPEIYPTSARTTGFGVASSLGK-VGGMVCPLVAVGLVTSCH--LRLAVI 323 (357)
Q Consensus 250 --~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ElfPt~~R~~~~~~~~~~~~-l~~~~~p~~~~~l~~~~~--~~~~~~ 323 (357)
..+...... ..+...+......+..+.+.+|+||++.|+++.|+++.+++ +++.++|++...+.+..+ ...++.
T Consensus 337 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~e~~p~~~r~tg~g~~~~~~~~lgg~~~p~i~g~l~~~~~~~~~~~~~ 416 (438)
T PRK09952 337 LEAQSIFWIVFFSIMLANIAHDMVVCVQQPMFTEMFGASYRYSGAGVGYQVASVVGGGFTPFIAAALVTYFGGSWHSVAI 416 (438)
T ss_pred HHcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCcchhHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHH
Confidence 111111111 11111122223345678899999999999999999998876 788999999988876432 223344
Q ss_pred HHHHHHHHHHHHHhhcccccc
Q 018373 324 LFEVVFVLAIASSLLFPFETM 344 (357)
Q Consensus 324 ~~~~~~~~~~~~~~~~~pet~ 344 (357)
+.+++++++.+..+ ..+||+
T Consensus 417 ~~~~~~~i~~v~~~-~~~~~~ 436 (438)
T PRK09952 417 YLLAGCLISAMTAL-LMKDNQ 436 (438)
T ss_pred HHHHHHHHHHHHHH-Hccccc
Confidence 44555555555544 457765
No 14
>PRK10406 alpha-ketoglutarate transporter; Provisional
Probab=99.91 E-value=7.3e-22 Score=187.93 Aligned_cols=258 Identities=19% Similarity=0.236 Sum_probs=139.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHh--------cCcchHHHHHHhhHHHHHHHHHHhcCCCChHHHHHcCChHHHHHHH
Q 018373 19 GRWMVALSAFWTAGTIFEASLAWVVM--------TRLNWRWLLAFSSVPSFALLLFYGLAPESPRYLCAKARTVDAHRIL 90 (357)
Q Consensus 19 g~~~~~~~~~~~~G~l~~~~i~~~~~--------~~~~WR~~~~~~~~p~l~~~~~~~~lpESP~wL~~~g~~~~a~~~l 90 (357)
|+..+..+.+...|.+++..+...+. +.++||++|.+++++.++.++.+..+||||++...+
T Consensus 159 g~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~gWr~~F~i~~~~~ll~~~~~~~~~e~~~~~~~~---------- 228 (432)
T PRK10406 159 GFYASFQYVTLIGGQLLALLVVVVLQQTLEDAELREWGWRIPFALGAVLAVVALWLRRQLDETSQQETRA---------- 228 (432)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHhccchHHHHHHHHHHHHHHHHHHhcCCCCchHHHhh----------
Confidence 55555555666666665554432221 258999999999999999888888999998752100
Q ss_pred HHHHHHcCCCCCCCcccchhhhhhhhhhhhhhcchhhhhhhhhhhhhccchhhhhhhcchhhHHHHHHHHHHHHHHHHHH
Q 018373 91 EKMAFVNQTKLPPGILVSDKAIKENEESNLLRDTHMLSMTRKITDKLKSGFSSFFMLFSRKLIRTTLLLWVLFFANVFSY 170 (357)
Q Consensus 91 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 170 (357)
. ++ ..++++++++ ++.........+.....+
T Consensus 229 -----~--~~----------------------------------------~~~~~~l~~~--~~~~~~~~~~~~~~~~~~ 259 (432)
T PRK10406 229 -----L--KE----------------------------------------AGSLKGLWRN--RRAFIMVLGFTAAGSLCF 259 (432)
T ss_pred -----h--cc----------------------------------------cccHHHHHhh--HHHHHHHHHHHHHHHHHH
Confidence 0 00 0012223321 122222222233334556
Q ss_pred HHHHHHhhhhcCCCCCCCcccccCCCCCchhhHHHHHHHHhhhhhHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHH--
Q 018373 171 YGAVLLTSKLSSGDNKCGSKVLHADKSKDNSLYVDVFIASLAELPGLILSAIIVDKIGRKLSMVLMFVSACIFLLPLV-- 248 (357)
Q Consensus 171 y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~d~~GRR~~~~~~~~~~~i~~~~~~-- 248 (357)
|+...|.|.+..+. .+ .+..+.. . ...+......++..+.+++.||+|||+.+.....++.+...++.
T Consensus 260 ~~~~~~lp~~l~~~-------~g-~s~~~~~-~-~~~i~~~~~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~ 329 (432)
T PRK10406 260 YTFTTYMQKYLVNT-------AG-MHANVAS-G-IMTAALFVFMLIQPLIGALSDKIGRRTSMLCFGSLAALFTVPILSA 329 (432)
T ss_pred HHHHHHHHHHHHHh-------cC-CCHHHHH-H-HHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHHHH
Confidence 66666666543111 00 0111111 1 12233445566777889999999999987766554433332221
Q ss_pred hh-h-hhHHHHHHHHHHHHHhhhhhhhhhhhccccccCcchhhHHHHHHHHHHH-HHhHHHHHHHHHHhhcchhhHHHHH
Q 018373 249 FH-Q-SAVVTTVLLFGVRMCVTGTITVATIYAPEIYPTSARTTGFGVASSLGKV-GGMVCPLVAVGLVTSCHLRLAVILF 325 (357)
Q Consensus 249 ~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ElfPt~~R~~~~~~~~~~~~l-~~~~~p~~~~~l~~~~~~~~~~~~~ 325 (357)
.. . +......+.....+......+..+.+.+|+||++.|+++.|++++++++ ++...|++...+ +..+.....+++
T Consensus 330 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~fp~~~r~t~~g~~~~~g~~~~g~~~p~~~~~l-~~~g~~~~~~~~ 408 (432)
T PRK10406 330 LQNVSSPYAAFGLVMCALLIVSFYTSISGILKAEMFPAQVRALGVGLSYAVANALFGGSAEYVALSL-KSIGMETAFFWY 408 (432)
T ss_pred HHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCccchhhhHHHHHHHHHHHhHHHHHHHHH-HHhCCCcHHHHH
Confidence 11 1 1211111111111111122345678899999999999999999999885 355577776644 443433233333
Q ss_pred -HHHHHHHHHHHhhccccccCcch
Q 018373 326 -EVVFVLAIASSLLFPFETMGREL 348 (357)
Q Consensus 326 -~~~~~~~~~~~~~~~pet~~~~l 348 (357)
++..+++.+..++ .|++||+.
T Consensus 409 ~~~~~~i~~~~~~~--l~~~~~~~ 430 (432)
T PRK10406 409 VTLMAVVAFLVSLM--LHRKGKGM 430 (432)
T ss_pred HHHHHHHHHHHHHH--hhhccccc
Confidence 4444555444444 46677764
No 15
>TIGR00903 2A0129 major facilitator 4 family protein. This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix.
Probab=99.88 E-value=1.7e-20 Score=174.43 Aligned_cols=246 Identities=15% Similarity=0.131 Sum_probs=148.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHhhH-HHHHHHHHHhcCCCChHHHHHcCChHHHHHHHHHHHHHc
Q 018373 19 GRWMVALSAFWTAGTIFEASLAWVVMTRLNWRWLLAFSSV-PSFALLLFYGLAPESPRYLCAKARTVDAHRILEKMAFVN 97 (357)
Q Consensus 19 g~~~~~~~~~~~~G~l~~~~i~~~~~~~~~WR~~~~~~~~-p~l~~~~~~~~lpESP~wL~~~g~~~~a~~~l~~l~~~~ 97 (357)
++..+..+.+.++|.+++..++..+.+..+||..|.+..+ +.+..++.++++||+|++. ++..+.
T Consensus 113 ~~a~~~~~~~~~lG~~l~~~~~~~l~~~~gWr~~f~~~~~l~~~~~~~~~~~lp~~p~~~---~~~~~~----------- 178 (368)
T TIGR00903 113 DLVISLLSFAMYLGIIFALAAGLKIYTAGGLQLLIIPIAAVAAAGIILVLAALPALPFQA---AEGFGF----------- 178 (368)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHHHcCCCCCCC---CCCcch-----------
Confidence 7778888888888888888777766677899999988554 4455666777899999752 110000
Q ss_pred CCCCCCCcccchhhhhhhhhhhhhhcchhhhhhhhhhhhhccchhhhhhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHh
Q 018373 98 QTKLPPGILVSDKAIKENEESNLLRDTHMLSMTRKITDKLKSGFSSFFMLFSRKLIRTTLLLWVLFFANVFSYYGAVLLT 177 (357)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~ 177 (357)
+ +. ..+++++++++. .+.....+++....+|+...|.
T Consensus 179 -------------~----~~-----------------------~~~~~~ll~~~~---~~~~~~~~~~~~~~~~~~~~wl 215 (368)
T TIGR00903 179 -------------K----DA-----------------------VKEFGALAGRKD---LWIIGAILGFGVALFDNLAIWL 215 (368)
T ss_pred -------------H----HH-----------------------HHHHHHHHcChh---HHHHHHHHHHHHHHHHHHHHHH
Confidence 0 00 001233444322 2334444556666778888888
Q ss_pred hhhcCCCCCCCcccccCCCCCchhhHHHHHHHHhhhhhHHHHHHHHHHhhchh---HHHHH-HHHHHHHHHHHHHhhhhh
Q 018373 178 SKLSSGDNKCGSKVLHADKSKDNSLYVDVFIASLAELPGLILSAIIVDKIGRK---LSMVL-MFVSACIFLLPLVFHQSA 253 (357)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~d~~GRR---~~~~~-~~~~~~i~~~~~~~~~~~ 253 (357)
|.+..+.. . +.+.. ....+..+.+.+..+++.||..|| +.... .....++....+....+.
T Consensus 216 p~~L~~~g---------~-s~~~~-----~~~~l~~~~g~~g~~~~~d~~~r~~~r~~~~~~~~~~~a~~~~~~~~~~~~ 280 (368)
T TIGR00903 216 EAALRPAG---------L-EDIAG-----DAVALAILAGLIGVAVIPDRVARAGLRSIYIRAAALLIAAFFLALAFELNR 280 (368)
T ss_pred HHHHHHCC---------C-ChHHH-----HHHHHHHHHHHHHHHHhhHHhhhhhhHHHHHHHHHHHHHHHHHHHHHcccc
Confidence 87653211 1 11111 112233344445557888887654 33332 222223222222222222
Q ss_pred HHHHHHHHHHHHHhhhhhhhhhhhccccccCcchhhHHHHHHHHHHHHHhHHHHHHHHHHhhcchhhHHHHHHHHHHHHH
Q 018373 254 VVTTVLLFGVRMCVTGTITVATIYAPEIYPTSARTTGFGVASSLGKVGGMVCPLVAVGLVTSCHLRLAVILFEVVFVLAI 333 (357)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~~~~~ElfPt~~R~~~~~~~~~~~~l~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~ 333 (357)
.....+.+...++..+.++..+.+.+|++|++.|+++.|+.+..++++++.+|.+...+.. +....+.++++..++++
T Consensus 281 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~rgt~~G~~~~~g~~~~~~~~~~~~~~~~--~~~~~f~~~~~~~~i~~ 358 (368)
T TIGR00903 281 LALFAFIGIAGLLMLPAYAIIMDWIGKFCDKELHGKAAGAIGFTSRAISVALALAAMLFIS--SAEAYFTFLAILITIAF 358 (368)
T ss_pred HHHHHHHHHHHHhhhhhHHHHHHHHHHhcchhhcCcccchhhHHHHHHHHHHHHHHHHHhc--CHHHHHHHHHHHHHHHH
Confidence 2222223333334445556788899999999999999999999999999999988876663 44456777888878777
Q ss_pred HHHhh
Q 018373 334 ASSLL 338 (357)
Q Consensus 334 ~~~~~ 338 (357)
+.+++
T Consensus 359 ~~~~~ 363 (368)
T TIGR00903 359 AIALL 363 (368)
T ss_pred HHHHh
Confidence 77654
No 16
>PRK12307 putative sialic acid transporter; Provisional
Probab=99.86 E-value=1.9e-19 Score=170.94 Aligned_cols=271 Identities=18% Similarity=0.187 Sum_probs=150.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHhhHHHHHHHHHHhcCCCChHHHHHcCChHHHHHHHHHHHHHcC
Q 018373 19 GRWMVALSAFWTAGTIFEASLAWVVMTRLNWRWLLAFSSVPSFALLLFYGLAPESPRYLCAKARTVDAHRILEKMAFVNQ 98 (357)
Q Consensus 19 g~~~~~~~~~~~~G~l~~~~i~~~~~~~~~WR~~~~~~~~p~l~~~~~~~~lpESP~wL~~~g~~~~a~~~l~~l~~~~~ 98 (357)
++..++.+.++.+|.+++..+...+.+..+||+.+.++.++.++.++.+...||+++|...+.+.+ +
T Consensus 141 ~~~~~~~~~~~~lg~~~~~~l~~~l~~~~~w~~~f~i~~~~~~~~~~~~~~~p~~~~~~~~~~~~~------------~- 207 (426)
T PRK12307 141 SKASAFLVSGFGIGNIIAAYFMPSFAEAYGWRAAFFVGLLPVLLVIYIRARAPESKEWEEAKLSGK------------G- 207 (426)
T ss_pred hHhhhHHHHHHhHHHHHHHHHHHHHcccCCHHHHHHHHHHHHHHHHHHHHHCCCChHHHHhhhhcc------------c-
Confidence 666777777888888777665544555679999999988887777777777899987643211000 0
Q ss_pred CCCCCCcccchhhhhhhhhhhhhhcchhhhhhhhhhhhhccchhhhhhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 018373 99 TKLPPGILVSDKAIKENEESNLLRDTHMLSMTRKITDKLKSGFSSFFMLFSRKLIRTTLLLWVLFFANVFSYYGAVLLTS 178 (357)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~ 178 (357)
++ . + +. . +.....++++++++..+.........+.....++....+.|
T Consensus 208 ~~---~------~---~~------~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 255 (426)
T PRK12307 208 KH---S------Q---SA------W--------------SVFSLSMKGLFNRAQFPLTLCVFIVLFSIFGANWPIFGLLP 255 (426)
T ss_pred cc---c------c---cc------h--------------hhhhHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 00 0 0 00 0 00001233445443333333222222222222223333344
Q ss_pred hhcCCCCCCCcccccCCCCCchhhHHHHHHHHhhhhhHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHh-hhhhHH-H
Q 018373 179 KLSSGDNKCGSKVLHADKSKDNSLYVDVFIASLAELPGLILSAIIVDKIGRKLSMVLMFVSACIFLLPLVF-HQSAVV-T 256 (357)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~d~~GRR~~~~~~~~~~~i~~~~~~~-~~~~~~-~ 256 (357)
.+....+ .+.... -....+..++.+++.++.+++.||+|||+.+..+.+++.+....+.. ...... .
T Consensus 256 ~~~~~~g---------~~~~~~--~~~~~~~~~~~~~g~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 324 (426)
T PRK12307 256 TYLAGEG---------FDTGVV--SNLMTAAAFGTVLGNIVWGLCADRIGLKKTFSIGLLMSFLFIFPLFRIPQDNYLLL 324 (426)
T ss_pred HHHHHcC---------CCHHHH--HHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHccccHHHH
Confidence 3321100 011111 12234456778899999999999999999988777665554433332 222211 1
Q ss_pred HHHHHHHHHHhhhhhhhhhhhccccccCcchhhHHHHHHHHHHHHHhHHHHHHHHHHhhcchhhH-HHHHHHHHHHHHHH
Q 018373 257 TVLLFGVRMCVTGTITVATIYAPEIYPTSARTTGFGVASSLGKVGGMVCPLVAVGLVTSCHLRLA-VILFEVVFVLAIAS 335 (357)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~~~~~~ElfPt~~R~~~~~~~~~~~~l~~~~~p~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~ 335 (357)
....+...+...+..+..+.+..|.+|++.|+++.|+.+.++++++.++|.+...+.+..+.... +++.+..+.++...
T Consensus 325 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~~~~~gp~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~ 404 (426)
T PRK12307 325 GACLFGLMATNVGVGGLVPKFLYDYFPLEVRGLGTGLIYNLAATSGTFNSMAATWLGITMGLGAALTFIVAFWTATILLI 404 (426)
T ss_pred HHHHHHHHHhcccHhHHHHHHHHHhCcHHHHhhhhhHHHHHHhHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhh
Confidence 11122221222233345667889999999999999999999999999999998888776553322 23333333333333
Q ss_pred HhhccccccC
Q 018373 336 SLLFPFETMG 345 (357)
Q Consensus 336 ~~~~~pet~~ 345 (357)
..+..||+.+
T Consensus 405 ~~~~~~~~~~ 414 (426)
T PRK12307 405 IGLSIPDRLK 414 (426)
T ss_pred ccccCChhhh
Confidence 4445566544
No 17
>PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional
Probab=99.85 E-value=8.5e-19 Score=165.40 Aligned_cols=256 Identities=21% Similarity=0.292 Sum_probs=145.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHhhHHHHH-HHHHHhcCCCChHHHHHcCChHHHHHHHHHHHHHc
Q 018373 19 GRWMVALSAFWTAGTIFEASLAWVVMTRLNWRWLLAFSSVPSFA-LLLFYGLAPESPRYLCAKARTVDAHRILEKMAFVN 97 (357)
Q Consensus 19 g~~~~~~~~~~~~G~l~~~~i~~~~~~~~~WR~~~~~~~~p~l~-~~~~~~~lpESP~wL~~~g~~~~a~~~l~~l~~~~ 97 (357)
|+..++.+.+..+|..++..++....+..+||..+.+..+..++ ..+...++||+|++...+++.++.+
T Consensus 138 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~---------- 207 (406)
T PRK11551 138 GTAVSLMYCGVPFGGALASVIGVLAAGDAAWRHIFYVGGVGPLLLVPLLMRWLPESRAFAQAAGAGKQRA---------- 207 (406)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHccccCHHHHHHHHHHHHHHHHHHHHHhCCCChhHHhccCcchhhh----------
Confidence 66777777888888888877765555667999998887665444 4455667899998643221110000
Q ss_pred CCCCCCCcccchhhhhhhhhhhhhhcchhhhhhhhhhhhhccchhhhhhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHh
Q 018373 98 QTKLPPGILVSDKAIKENEESNLLRDTHMLSMTRKITDKLKSGFSSFFMLFSRKLIRTTLLLWVLFFANVFSYYGAVLLT 177 (357)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~ 177 (357)
+ ..+.+++++..++....+...+.....++....+.
T Consensus 208 ------------------~--------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (406)
T PRK11551 208 ------------------P--------------------------VLRALFGEGRATATLLLWISYFFTLIVLYFLLNWL 243 (406)
T ss_pred ------------------h--------------------------hHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0 00001111111112222222222333344444445
Q ss_pred hhhcCCCCCCCcccccCCCCCchhhHHHHHHHHhhhhhHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHhhhhhHHHH
Q 018373 178 SKLSSGDNKCGSKVLHADKSKDNSLYVDVFIASLAELPGLILSAIIVDKIGRKLSMVLMFVSACIFLLPLVFHQSAVVTT 257 (357)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~d~~GRR~~~~~~~~~~~i~~~~~~~~~~~~~~~ 257 (357)
|.+..+.+ .+..... ......+++.+++.++.+++.||+|||+.+..+.....+....+....+.....
T Consensus 244 p~~~~~~g---------~s~~~~~--~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 312 (406)
T PRK11551 244 PSLLVGQG---------LSRSQAG--LVQIAFNIGGALGSLLIGALMDRLRPRRVVLLIYAGILASLAALAAAPSFAGML 312 (406)
T ss_pred HHHHHhCC---------CChhhhh--HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhcCcHHHHH
Confidence 54432111 1111111 223345677889999999999999999998776555444443333322222222
Q ss_pred HHHHHHHHHhhhhhhhhhhhccccccCcchhhHHHHHHHHHHHHHhHHHHHHHHHHhhcchhhH-HHHHHHHHHHHHHHH
Q 018373 258 VLLFGVRMCVTGTITVATIYAPEIYPTSARTTGFGVASSLGKVGGMVCPLVAVGLVTSCHLRLA-VILFEVVFVLAIASS 336 (357)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~~~~~ElfPt~~R~~~~~~~~~~~~l~~~~~p~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~ 336 (357)
+..+...++..+..+..+.+.+|.+|++.|+++.|+.+.++++++.++|.+...+.+..+.... ++......+++.+..
T Consensus 313 ~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~ 392 (406)
T PRK11551 313 LAGFAAGLFVVGGQSVLYALAPLFYPTQVRGTGVGAAVAVGRLGSMAGPLLAGQLLALGRSTVGVIGASIPVILVAALAA 392 (406)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHcchhhhhhhhhHHHHhhhHHHHHHhhhHhhhhccCCchHHHHHHHHHHHHHHHHHH
Confidence 2222222333344567788999999999999999999999999999999999888765433222 233333334444444
Q ss_pred hhc
Q 018373 337 LLF 339 (357)
Q Consensus 337 ~~~ 339 (357)
+..
T Consensus 393 ~~~ 395 (406)
T PRK11551 393 LLL 395 (406)
T ss_pred HHH
Confidence 443
No 18
>PRK15075 citrate-proton symporter; Provisional
Probab=99.84 E-value=1.9e-18 Score=164.64 Aligned_cols=144 Identities=17% Similarity=0.210 Sum_probs=84.5
Q ss_pred HHHHhhhhhHHHHHHHHHHhhchhHHHHHHHHHHHHHHHH-H-Hh-hhhhH-HHHHHHHHHHHHhhhhhhhhhhhccccc
Q 018373 207 FIASLAELPGLILSAIIVDKIGRKLSMVLMFVSACIFLLP-L-VF-HQSAV-VTTVLLFGVRMCVTGTITVATIYAPEIY 282 (357)
Q Consensus 207 ~i~~~~~~~~~~~~~~l~d~~GRR~~~~~~~~~~~i~~~~-~-~~-~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~Elf 282 (357)
.+..++.+++.++.+++.||+|||+.++.+..++.+.... . .. ..... ..........++.....+..+.+.+|.+
T Consensus 281 ~~~~~~~~~~~~~~g~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~e~~ 360 (434)
T PRK15075 281 LCVGVSNFIWLPIGGALSDRIGRRPVLIAFTVLAILTAYPALSWLVAAPSFARMLAVELWLSFLYGSYNGAMVVALTEVM 360 (434)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHhhHHHHHHHHC
Confidence 3456677888999999999999999887655443322211 1 11 11111 1111111111222222345567889999
Q ss_pred cCcchhhHHHHHHHHHHH-HHhHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHHhhccccccCcchhh
Q 018373 283 PTSARTTGFGVASSLGKV-GGMVCPLVAVGLVTSCHLRLAVILFEVVFVLAIASSLLFPFETMGRELKD 350 (357)
Q Consensus 283 Pt~~R~~~~~~~~~~~~l-~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~pet~~~~l~e 350 (357)
|++.|+++.|+.+++++. ++.++|.+...+.+..+......++...+.++..+..+...+.++..++.
T Consensus 361 p~~~rg~~~g~~~~~~~~~~g~~~p~~~g~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 429 (434)
T PRK15075 361 PAEVRTAGFSLAYSLATAIFGGFTPAISTWLIHVTGDKAAPGYWLSFAAVCGLIATLVLYRRRGARLQA 429 (434)
T ss_pred CCCccchheeHHHHHHHHHHhhhHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHhccccchhhhh
Confidence 999999999999888875 48889999888877655322112222222223333334455766766654
No 19
>TIGR00895 2A0115 benzoate transport.
Probab=99.82 E-value=4.5e-18 Score=159.32 Aligned_cols=256 Identities=23% Similarity=0.294 Sum_probs=147.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHhh-HHHHHHHHHHhcCCCChHHHHHcCChHHHHHHHHHHHHHc
Q 018373 19 GRWMVALSAFWTAGTIFEASLAWVVMTRLNWRWLLAFSS-VPSFALLLFYGLAPESPRYLCAKARTVDAHRILEKMAFVN 97 (357)
Q Consensus 19 g~~~~~~~~~~~~G~l~~~~i~~~~~~~~~WR~~~~~~~-~p~l~~~~~~~~lpESP~wL~~~g~~~~a~~~l~~l~~~~ 97 (357)
++..++.+.+..+|..+++.+...+.+..+||..+.+.+ ++.+..++...++||+|++...+ +.+++.+..+++...+
T Consensus 140 ~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 218 (398)
T TIGR00895 140 GTAVGLMFCGYPIGAAVGGFLAGWLIPVFGWRSLFYVGGIAPLLLLLLLMRFLPESIDFLVSK-RPETVRRIVNAIAPQM 218 (398)
T ss_pred chhHhhHhhHHHHHHHHHHHHHHHHhhcccceeehhhhhhHHHHHHHHHHHhCCCCChHHHhc-CHHHHHHHHHHHHHhc
Confidence 667777788888888888777655666789999988885 55555666777899999987665 5556555555543321
Q ss_pred CCCCCCCcccchhhhhhhhhhhhhhcchhhhhhhhhhhhhccchhhhhhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHh
Q 018373 98 QTKLPPGILVSDKAIKENEESNLLRDTHMLSMTRKITDKLKSGFSSFFMLFSRKLIRTTLLLWVLFFANVFSYYGAVLLT 177 (357)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~ 177 (357)
..+. +.+.++++ . ..+......+.+++++..++....+...+.....++....+.
T Consensus 219 ~~~~---------~~~~~~~~-------------~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 273 (398)
T TIGR00895 219 QAEA---------QSALPEQK-------------A---TQGTKRSVFKALFQGKTARITVLLWLLYFMLLVGVYFLTNWL 273 (398)
T ss_pred cccc---------cccccccc-------------c---ccchhhHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1100 00000000 0 000001112223434444444444444444444555555555
Q ss_pred hhhcCCCCCCCcccccCCCCCchhhHHHHHHHHhhhhhHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHhhhhhHHHH
Q 018373 178 SKLSSGDNKCGSKVLHADKSKDNSLYVDVFIASLAELPGLILSAIIVDKIGRKLSMVLMFVSACIFLLPLVFHQSAVVTT 257 (357)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~d~~GRR~~~~~~~~~~~i~~~~~~~~~~~~~~~ 257 (357)
|.+....+ .+.... -....+..++.+++.++.+++.||+|||+....................+.....
T Consensus 274 ~~~~~~~g---------~~~~~~--~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 342 (398)
T TIGR00895 274 PKLMVELG---------FSLSLA--ATGGALFNFGGVIGSIIFGWLADRLGPRVTALLLLLGAVFAVLVGSTLFSPTLLL 342 (398)
T ss_pred HHHHHHcC---------CCHHHH--HHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHhhCHHHHH
Confidence 54331110 011111 1223445677889999999999999999555443333322222222122222222
Q ss_pred HHHHHHHHHhhhhhhhhhhhccccccCcchhhHHHHHHHHHHHHHhHHHHHHHH
Q 018373 258 VLLFGVRMCVTGTITVATIYAPEIYPTSARTTGFGVASSLGKVGGMVCPLVAVG 311 (357)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~~~~~ElfPt~~R~~~~~~~~~~~~l~~~~~p~~~~~ 311 (357)
...+...++..+..+..+.+.+|.+|++.|+++.|+.+.++.+++.++|.+..+
T Consensus 343 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~g~~~~G~ 396 (398)
T TIGR00895 343 LLGAIAGFFVNGGQSGLYALMALFYPTAIRATGVGWAIGIGRLGAIIGPILAGY 396 (398)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHhHHh
Confidence 222233333344556788899999999999999999999999999999987664
No 20
>TIGR00891 2A0112 putative sialic acid transporter.
Probab=99.82 E-value=4.2e-18 Score=160.08 Aligned_cols=255 Identities=18% Similarity=0.216 Sum_probs=139.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhcCc--chHHHHHHhhHHHHHHHHHHhcCCCChHHHHHcCChHHHHHHHHHHHHH
Q 018373 19 GRWMVALSAFWTAGTIFEASLAWVVMTRL--NWRWLLAFSSVPSFALLLFYGLAPESPRYLCAKARTVDAHRILEKMAFV 96 (357)
Q Consensus 19 g~~~~~~~~~~~~G~l~~~~i~~~~~~~~--~WR~~~~~~~~p~l~~~~~~~~lpESP~wL~~~g~~~~a~~~l~~l~~~ 96 (357)
++..++.+.+..+|..++..++..+.+.. +||+.+.+.+++.++.++....+||+|++...+++.++..+..++..+.
T Consensus 135 ~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~~~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 214 (405)
T TIGR00891 135 NKASGLLISGYAVGAVVAAQVYSLVVPVWGDGWRALFFISILPIIFALWLRKNIPEAEDWKEKHAGKALVRTMVDILYGG 214 (405)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHhCCCChhHHHHhhhhhhhhhHHHHHhcc
Confidence 66777778888888888777665544444 4999999999988888888888999998764433322222222111100
Q ss_pred cCCCCCCCcccchhhhhhhhhhhhhhcchhhhhhhhhhhhhccchhhhhhhcchhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 018373 97 NQTKLPPGILVSDKAIKENEESNLLRDTHMLSMTRKITDKLKSGFSSFFMLFSRKLIRTTLLLWVLFFANVFSYYGAVLL 176 (357)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~y~~~~~ 176 (357)
+ + ...+.. ++.....+... +++++................++...+
T Consensus 215 ---~-~----------~~~~~~-------------------~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 260 (405)
T TIGR00891 215 ---E-H----------RIANIV-------------------MTLAAAMVQSA-GKRWPTFVYLVVLVLFANLYSHPIQDL 260 (405)
T ss_pred ---c-h----------hhhhhh-------------------hhhhHHhhhhh-hhhhHHHHHHHHHHHHHHHHHhhhhhh
Confidence 0 0 000000 00000011100 111111111111111112222222222
Q ss_pred hhhhcCCCCCCCcccccCCCCCchhhHHHHHHHHhhhhhHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHH-HhhhhhHH
Q 018373 177 TSKLSSGDNKCGSKVLHADKSKDNSLYVDVFIASLAELPGLILSAIIVDKIGRKLSMVLMFVSACIFLLPL-VFHQSAVV 255 (357)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~d~~GRR~~~~~~~~~~~i~~~~~-~~~~~~~~ 255 (357)
.|.+.... . ..+..+.. .......++.+++.++.+++.||+|||+.+..+...+.+..... ....+...
T Consensus 261 ~~~~~~~~-------~-g~s~~~~~--~~~~~~~~~~~~g~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 330 (405)
T TIGR00891 261 LPTYLKAD-------L-GLSPHTVA--NIVVFSNIGAIVGGCVFGFLGDWLGRRKAYVCSLLAGQLLIIPVFAIGANVAV 330 (405)
T ss_pred hHHHHHHH-------h-CCCHHHHH--HHHHHHHHHHHHHHHHHHHHHHHhCchhhhHHHHHHHHHHHHHHHHhCCchHH
Confidence 22221100 0 00111111 12234567788999999999999999999887766543332222 22222222
Q ss_pred HHHHHHHHHHHhhhhhhhhhhhccccccCcchhhHHHHHHHHHHHHHhHHHHHHHHHHhhcc
Q 018373 256 TTVLLFGVRMCVTGTITVATIYAPEIYPTSARTTGFGVASSLGKVGGMVCPLVAVGLVTSCH 317 (357)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~~~~~~ElfPt~~R~~~~~~~~~~~~l~~~~~p~~~~~l~~~~~ 317 (357)
.....+...++..+.++..+.+.+|.+|++.|+++.|+.+.++.+++.++|.+...+.+..+
T Consensus 331 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~g~~~~g~l~~~~g 392 (405)
T TIGR00891 331 LGLGLFFQQMLVQGIWGILPKHLGEYFPTDQRAAGLGFTYQLGNLGGALAPIIGALLAQRLD 392 (405)
T ss_pred HHHHHHHHHHHHccchhhHHHHHhhhCCcchhHHHhhHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 11111222223334456677888999999999999999999999999999999998887655
No 21
>PRK10489 enterobactin exporter EntS; Provisional
Probab=99.81 E-value=1.1e-17 Score=158.53 Aligned_cols=149 Identities=10% Similarity=-0.045 Sum_probs=105.6
Q ss_pred HHHhhhhhHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhhhhccccccCcch
Q 018373 208 IASLAELPGLILSAIIVDKIGRKLSMVLMFVSACIFLLPLVFHQSAVVTTVLLFGVRMCVTGTITVATIYAPEIYPTSAR 287 (357)
Q Consensus 208 i~~~~~~~~~~~~~~l~d~~GRR~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ElfPt~~R 287 (357)
+..++.+++.++.+++.||.++|+.+..+..+.++.++.+....+.....+..+...+......+..+.+..|.+|.+.|
T Consensus 267 ~~~~g~~ig~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~ 346 (417)
T PRK10489 267 AVPLGAALGALTSGWLAHSARPGLLMLLSTLGSFLAVGLFGLMPMWILAVLCLALFGYLSAISSLLQYTLLQTQTPDEML 346 (417)
T ss_pred HHHHHHHHHHHHHHHhhhccCcchHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHHH
Confidence 44567788889999999998777777666655554444333332222211222222222122234556788999999999
Q ss_pred hhHHHHHHHHHHHHHhHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHHhhccccccCcchhhhHhhhh
Q 018373 288 TTGFGVASSLGKVGGMVCPLVAVGLVTSCHLRLAVILFEVVFVLAIASSLLFPFETMGRELKDTVDAIE 356 (357)
Q Consensus 288 ~~~~~~~~~~~~l~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~pet~~~~l~e~~~~~~ 356 (357)
++++|+.+....++..++|.+.+.+.+..+....++.++++.++..++.+...||+|++++||+-+|-.
T Consensus 347 g~~~g~~~~~~~~g~~~g~~l~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 415 (417)
T PRK10489 347 GRINGLWTAQNVTGDAIGAALLGGLGAMMTPVASASASGFGLLIIGVLLLLVLGELRRFRQTPPEVDAS 415 (417)
T ss_pred HHHHHHHHHHHhhhHhHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHhcccccccccccccCCCC
Confidence 999999999999999999999998888766555667777777777777777789999999999988753
No 22
>PRK11663 regulatory protein UhpC; Provisional
Probab=99.81 E-value=8.5e-18 Score=160.09 Aligned_cols=279 Identities=13% Similarity=0.116 Sum_probs=148.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHhhHHHHH-HHHHHhcCCCChHHHHHcCChHHHHHHHHHHHHHc
Q 018373 19 GRWMVALSAFWTAGTIFEASLAWVVMTRLNWRWLLAFSSVPSFA-LLLFYGLAPESPRYLCAKARTVDAHRILEKMAFVN 97 (357)
Q Consensus 19 g~~~~~~~~~~~~G~l~~~~i~~~~~~~~~WR~~~~~~~~p~l~-~~~~~~~lpESP~wL~~~g~~~~a~~~l~~l~~~~ 97 (357)
|+..++.+.+..+|..++..+...+.+..+||+.|.+.+++.++ .++..+++||+|++...+.+.++..
T Consensus 146 g~~~~~~~~~~~~g~~~~~~~~~~l~~~~gw~~~f~~~~i~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~---------- 215 (434)
T PRK11663 146 GGWWAIWNTAHNVGGALIPLVVGAIALHYGWRYGMMIAGIIAIVVGLFLCWRLRDKPQAMGLPSVGEWRH---------- 215 (434)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHcCCCHhhcCCCCcccccc----------
Confidence 77778888888888888776665556678999999988776554 3455667899997531110000000
Q ss_pred CCCCCCCcccchhhhhhhhhhhhhhcchhhhhhhhhhhhhccchhh-hh-hhcchhhHHHHHHHHHHHHHHHHHHHHHHH
Q 018373 98 QTKLPPGILVSDKAIKENEESNLLRDTHMLSMTRKITDKLKSGFSS-FF-MLFSRKLIRTTLLLWVLFFANVFSYYGAVL 175 (357)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~l~~~~~~~~~~~~~~~~~~~~~~~y~~~~ 175 (357)
+ ..+.+++++ ..+.+..+ ++ ..++++ +........+.....+++...
T Consensus 216 -----------~-~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~ 264 (434)
T PRK11663 216 -----------D-ALELAQQQE----------------GAGLSRKEILTKYVLLNP---YIWLLSFSYVLVYVVRAAIND 264 (434)
T ss_pred -----------c-ccccchhcc----------------ccCCChhhhHHHHHhcCh---HHHHHHHHHHHHHHHHHHHHH
Confidence 0 000000000 00000000 11 011111 122222223333344455555
Q ss_pred HhhhhcCCCCCCCcccccCCCCCchhhHHHHHHHHhhhhhHHHHHHHHHHhh--chh-HHHHHHHHHHHHHHHHH-Hhhh
Q 018373 176 LTSKLSSGDNKCGSKVLHADKSKDNSLYVDVFIASLAELPGLILSAIIVDKI--GRK-LSMVLMFVSACIFLLPL-VFHQ 251 (357)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~d~~--GRR-~~~~~~~~~~~i~~~~~-~~~~ 251 (357)
+.|.+..+. ...+..... .......++..++.++.+++.||+ +|| ........+.......+ ....
T Consensus 265 ~~p~~l~~~--------~g~s~~~a~--~~~~~~~~~~~~g~~~~g~l~dr~~~~~r~~~~~~~~~~~~~~~~~~~~~~~ 334 (434)
T PRK11663 265 WGNLYMSET--------LGVDLVTAN--SAVSMFELGGFIGALVAGWGSDKLFNGNRGPMNLIFAAGILLSVGSLWLMPF 334 (434)
T ss_pred HHHHHHHhc--------cCCCHHHHH--HHHHHHHHHHHHHHHHHhhhHHHhccCCccHHHHHHHHHHHHHHHHHHHccc
Confidence 555443111 001111111 222345677889999999999999 333 33222211111111111 1111
Q ss_pred -hhHHHHHHHHHHHHHhhhhhhhhhhhccccccCcchhhHHHHHHHHHHHHHhHHHHHHHHHHhhcchhhHHHHHHHHHH
Q 018373 252 -SAVVTTVLLFGVRMCVTGTITVATIYAPEIYPTSARTTGFGVASSLGKVGGMVCPLVAVGLVTSCHLRLAVILFEVVFV 330 (357)
Q Consensus 252 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~ElfPt~~R~~~~~~~~~~~~l~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~ 330 (357)
+........+...++..++......+.+|.+|++.|++++|+.+..+.+++.++|.+..++.+..+....+.+.+++++
T Consensus 335 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~p~~~g~l~~~~g~~~~f~~~~~~~~ 414 (434)
T PRK11663 335 ASYVMQAACFFTIGFFVFGPQMLIGMAAAECSHKEAAGAATGFVGLFAYLGAALSGYPLAKVLEIWHWTGFFVVISIAAG 414 (434)
T ss_pred ccHHHHHHHHHHHHHHHhhHHHHHHHHHHhcccHhhHHhHHHHHHHHHHHHHHHhcccHHHHHHhcccHHHHHHHHHHHH
Confidence 1111111222222222233334456789999999999999999999999999999999988887666666777777777
Q ss_pred HHHHHHhhccccccCcch
Q 018373 331 LAIASSLLFPFETMGREL 348 (357)
Q Consensus 331 ~~~~~~~~~~pet~~~~l 348 (357)
++.+.++...++++++.-
T Consensus 415 ~~~~~~~~~~~~~~~~~~ 432 (434)
T PRK11663 415 ISALLLLPFLNAQAPREA 432 (434)
T ss_pred HHHHHHHHHHhhhchhcc
Confidence 776666666666665543
No 23
>TIGR00883 2A0106 metabolite-proton symporter. This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc.
Probab=99.77 E-value=7e-17 Score=150.93 Aligned_cols=111 Identities=23% Similarity=0.354 Sum_probs=72.1
Q ss_pred HHHHhhhhhHHHHHHHHHHhhchhHHHHHHHHHHHHHHH--HHHh-h-hhhHHHHHHHHHHHHHhhhhhhhhhhhccccc
Q 018373 207 FIASLAELPGLILSAIIVDKIGRKLSMVLMFVSACIFLL--PLVF-H-QSAVVTTVLLFGVRMCVTGTITVATIYAPEIY 282 (357)
Q Consensus 207 ~i~~~~~~~~~~~~~~l~d~~GRR~~~~~~~~~~~i~~~--~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Elf 282 (357)
.+..+...++.++.+++.||+|||+.+.....++.+... .... . .+............+......+..+.+.+|++
T Consensus 262 ~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 341 (394)
T TIGR00883 262 MLSLILFFITIPLSGALSDRIGRRPVLIIFTVLAALLAVPLLMALLDSGSFTLFFFLVLGLALIGGMYTGPMGSFLPELF 341 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHhhhHHHHHHHhC
Confidence 345667788888999999999999987754443332221 1111 1 12222112222222222334566788999999
Q ss_pred cCcchhhHHHHHHHHH-HHHHhHHHHHHHHHHhhcc
Q 018373 283 PTSARTTGFGVASSLG-KVGGMVCPLVAVGLVTSCH 317 (357)
Q Consensus 283 Pt~~R~~~~~~~~~~~-~l~~~~~p~~~~~l~~~~~ 317 (357)
|++.|+++.++.+.++ .+++.++|.+...+.+..+
T Consensus 342 p~~~~~~~~~~~~~~~~~~g~~~~p~~~g~l~~~~g 377 (394)
T TIGR00883 342 PTEVRYTGASLAYNLAGAIFGGFAPYIAAALVAMTG 377 (394)
T ss_pred CccceeeEeeehhHhHHHHHhhHHHHHHHHHHHHcC
Confidence 9999999999977665 4677799999888877655
No 24
>TIGR02332 HpaX 4-hydroxyphenylacetate permease. This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially.
Probab=99.77 E-value=1.3e-16 Score=150.93 Aligned_cols=256 Identities=14% Similarity=0.187 Sum_probs=137.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHh------cCcchHHHHHHhhHHHHHH-HHHHhcCCCChH---HHHHcCChHHHHH
Q 018373 19 GRWMVALSAFWTAGTIFEASLAWVVM------TRLNWRWLLAFSSVPSFAL-LLFYGLAPESPR---YLCAKARTVDAHR 88 (357)
Q Consensus 19 g~~~~~~~~~~~~G~l~~~~i~~~~~------~~~~WR~~~~~~~~p~l~~-~~~~~~lpESP~---wL~~~g~~~~a~~ 88 (357)
|+..+..+.+..+|..++..++..+. +..+||+.|.+.+++.++. .+..+++||+|+ |+.. ++++
T Consensus 131 g~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~gwr~~f~~~~~~~l~~~~~~~~~~~~~p~~~~~l~~-----~~~~ 205 (412)
T TIGR02332 131 ARANALFMIAMPVTMALGLILSGYILALDGLMALKGWQWLFLLEGFPSVILGVMTWFWLDDSPDKAKWLDE-----EDKK 205 (412)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCccchhHHHHHHHHHHHHHHHHHhhccCCCcccCCCCCH-----HHHH
Confidence 77788888888999988887765443 2369999999988887654 456677899994 4322 1112
Q ss_pred HHHHHHHHcCCCCCCCcccchhhhhhhhhhhhhhcchhhhhhhhhhhhhccchhhhhhhcchhhHHHHHHHHHHHHHHHH
Q 018373 89 ILEKMAFVNQTKLPPGILVSDKAIKENEESNLLRDTHMLSMTRKITDKLKSGFSSFFMLFSRKLIRTTLLLWVLFFANVF 168 (357)
Q Consensus 89 ~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 168 (357)
..++..+.+..+. ++.+...+ . .+.+....++.+++++. +......++...
T Consensus 206 ~~~~~~~~~~~~~-------------~~~~~~~~---------~---~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~ 256 (412)
T TIGR02332 206 ALKEMIDNDQLTL-------------EQPEGAFA---------H---AAMPQRSMLREIFTPAI----MLYTLAYFCLTN 256 (412)
T ss_pred HHHHHHHhccccc-------------cccccccc---------c---ccccHHHHHHHhcChHH----HHHHHHHHHHHH
Confidence 1111111000000 00000000 0 00000112333443322 222333344445
Q ss_pred HHHHHHHHhhhhcCCCCCCCcccccCCCCCchhhHHHHHHHHhhhhhHHHHHHHHHHhhchhHHH-HHHHHHHHHHHHHH
Q 018373 169 SYYGAVLLTSKLSSGDNKCGSKVLHADKSKDNSLYVDVFIASLAELPGLILSAIIVDKIGRKLSM-VLMFVSACIFLLPL 247 (357)
Q Consensus 169 ~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~d~~GRR~~~-~~~~~~~~i~~~~~ 247 (357)
.+++...+.|.+.++.. . ..+....-.......++..+|.++.+++.||+|||+.. ........+.+...
T Consensus 257 ~~~~~~~~~p~~l~~~~--------~-~~s~~~~~~~~~~~~l~~~~g~l~~g~l~dr~~~r~~~~~~~~~~~~~~~~~~ 327 (412)
T TIGR02332 257 TLSAINIWTPQILQSFN--------Q-GSSNIMIGLLAAIPQFCTIFGMIWWSRHSDRLKERKHHTALPYLFAAAGWLLA 327 (412)
T ss_pred HHHHHHHHHHHHHHhcC--------C-CCcHHHhHHHhhHHHHHHHHHHHHHHHHhcccCccHHHHHHHHHHHHHHHHHH
Confidence 56666666666553210 0 00101111122445677888999999999999977753 33333332222211
Q ss_pred HhhhhhHHHHHHHHHHHHHhhhhhhhhhhhccccccCcchhhHHHHHHHHHHHHHhHHHHHHHHHHhhcc
Q 018373 248 VFHQSAVVTTVLLFGVRMCVTGTITVATIYAPEIYPTSARTTGFGVASSLGKVGGMVCPLVAVGLVTSCH 317 (357)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ElfPt~~R~~~~~~~~~~~~l~~~~~p~~~~~l~~~~~ 317 (357)
....+............+......+..+....|.+|++.|+++.|+.+..++++++++|.+...+.+..+
T Consensus 328 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~a~g~~~~~~~~g~~~~p~~~g~i~~~~g 397 (412)
T TIGR02332 328 SATDHNLIQLLGIIMASMGSFSAMAIFWTTPDQSISLQARAIAIAVINATGNIGSALSPFLIGILKDATG 397 (412)
T ss_pred HhcCCHHHHHHHHHHHHHHhhhhhhHHHhhcccccchHHHHHHHHHHHHhhhhhhhhhhhhcccccccCC
Confidence 1121221111111111111112233456677899999999999999999999999999999887776544
No 25
>PRK03893 putative sialic acid transporter; Provisional
Probab=99.77 E-value=1.2e-16 Score=154.70 Aligned_cols=136 Identities=18% Similarity=0.287 Sum_probs=86.6
Q ss_pred HHHHhhhhhHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHhh-hhhH-HHHHHHHHHHHHhhhhhhhhhhhccccccC
Q 018373 207 FIASLAELPGLILSAIIVDKIGRKLSMVLMFVSACIFLLPLVFH-QSAV-VTTVLLFGVRMCVTGTITVATIYAPEIYPT 284 (357)
Q Consensus 207 ~i~~~~~~~~~~~~~~l~d~~GRR~~~~~~~~~~~i~~~~~~~~-~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ElfPt 284 (357)
....++.+++.++.+++.||+|||+.+..+..+..+..+..... .... ......+...+...+..+..+.+.+|.+|.
T Consensus 318 ~~~~~~~~~g~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 397 (496)
T PRK03893 318 FFSGFGAAVGCCVGGFLGDWLGTRKAYVCSLLISQLLIIPVFAIGGANVWVLGLLLFFQQMLGQGISGLLPKLIGGYFDT 397 (496)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHhcccchhhHHHHHhhCCH
Confidence 44567788899999999999999998877665544433322221 1111 111111211122223345566788999999
Q ss_pred cchhhHHHHHHHHHHHHHhHHHHHHHHHHhhcchhhHHHHHHHHH-HHHHHHHhhcccc
Q 018373 285 SARTTGFGVASSLGKVGGMVCPLVAVGLVTSCHLRLAVILFEVVF-VLAIASSLLFPFE 342 (357)
Q Consensus 285 ~~R~~~~~~~~~~~~l~~~~~p~~~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~pe 342 (357)
+.|+++.|+.+..+.+++.++|.+...+.+..+....+.+.++.+ +++.+...+..|+
T Consensus 398 ~~~g~~~~~~~~~~~~g~~lgp~l~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 456 (496)
T PRK03893 398 EQRAAGLGFTYNVGALGGALAPILGALIAQRLDLGTALASLSFSLTFVVILLIGLDMPS 456 (496)
T ss_pred HHhhcccchhhhhhhHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHHHhcCcH
Confidence 999999999999999999999999888877665444444444333 3333334444454
No 26
>PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional
Probab=99.75 E-value=7.3e-16 Score=147.61 Aligned_cols=144 Identities=17% Similarity=0.222 Sum_probs=85.3
Q ss_pred HHHhhhhhHHHHHHHHHHhh--chhHHHHH-HHHHHHHHHHHHHhh--hhhHHHHHHHHHHHHHhhhhhhhhhhhccccc
Q 018373 208 IASLAELPGLILSAIIVDKI--GRKLSMVL-MFVSACIFLLPLVFH--QSAVVTTVLLFGVRMCVTGTITVATIYAPEIY 282 (357)
Q Consensus 208 i~~~~~~~~~~~~~~l~d~~--GRR~~~~~-~~~~~~i~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Elf 282 (357)
...++.+++.++.+++.||+ |||..... ...+..+....+... .+.....+..+...+...++......+..|.+
T Consensus 297 ~~~~~~~~g~~~~G~l~dr~~~~r~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 376 (452)
T PRK11273 297 LYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWLNPAGNPTVDMACMIVIGFLIYGPVMLIGLHALELA 376 (452)
T ss_pred HHHHHHHHHHHHHHHHHHHHccCCcchHHHHHHHHHHHHHHHHHHhcccChHHHHHHHHHHHHHHHhHHHHHHHHHHHHc
Confidence 44567788899999999999 55653322 222212222211221 11111112222222222233333456778999
Q ss_pred cCcchhhHHHHHHHHHHHHHhH-HHHHHHHHHhhcchhhHHHHHHHHHHHHHHHHh-hccccccCcchhhhHh
Q 018373 283 PTSARTTGFGVASSLGKVGGMV-CPLVAVGLVTSCHLRLAVILFEVVFVLAIASSL-LFPFETMGRELKDTVD 353 (357)
Q Consensus 283 Pt~~R~~~~~~~~~~~~l~~~~-~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~pet~~~~l~e~~~ 353 (357)
|++.|+++.|+.+..+.+++.+ +|.+.+.+.+..+....+++.+++++++.+... +..+|+|++ ||.++
T Consensus 377 p~~~~g~~~g~~~~~~~~g~~~~g~~v~g~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~ 447 (452)
T PRK11273 377 PKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIVVMIGEKRHH--EELLQ 447 (452)
T ss_pred ChhhhhhHHHHHHHHHHHHHHHhhhhhHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHhccccchH--HHHHh
Confidence 9999999999999999888654 688888888776655666666666666655544 444565543 45444
No 27
>TIGR00893 2A0114 d-galactonate transporter.
Probab=99.74 E-value=4e-16 Score=145.61 Aligned_cols=131 Identities=18% Similarity=0.226 Sum_probs=81.8
Q ss_pred HHHHhhhhhHHHHHHHHHHhhchhHH--HHHHHH--HHHH--HHHHHHhh-hhhHHHHHHHHHHHHHhhhhhhhhhhhcc
Q 018373 207 FIASLAELPGLILSAIIVDKIGRKLS--MVLMFV--SACI--FLLPLVFH-QSAVVTTVLLFGVRMCVTGTITVATIYAP 279 (357)
Q Consensus 207 ~i~~~~~~~~~~~~~~l~d~~GRR~~--~~~~~~--~~~i--~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 279 (357)
.+..+..+++.++.+++.||+|||+. ...... .+.+ ........ ...............+..+..+..+.+.+
T Consensus 258 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 337 (399)
T TIGR00893 258 SLPGIVGFIGMILGGRLSDLLLRRGKSLVFARKTAIIAGLVLSLLMFATNYVNIPYAALALVALGFFGLGAGAIGWALIS 337 (399)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHhchhhhhHHHHHHH
Confidence 34567778899999999999999962 111111 1111 11111111 11111111112222222334567889999
Q ss_pred ccccCcchhhHHHHHHHHHHHHHhHHHHHHHHHHhhcc-hhhHHHHHHHHHHHHHHHHh
Q 018373 280 EIYPTSARTTGFGVASSLGKVGGMVCPLVAVGLVTSCH-LRLAVILFEVVFVLAIASSL 337 (357)
Q Consensus 280 ElfPt~~R~~~~~~~~~~~~l~~~~~p~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~ 337 (357)
|.+|++.|+++.|+.+.+..+++.++|.+.+.+.+..+ ....+.+.+++++++.+..+
T Consensus 338 ~~~~~~~~g~~~~~~~~~~~~g~~~~~~i~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~ 396 (399)
T TIGR00893 338 DNAPGNIAGLTGGLINSLGNLGGIVGPIVIGAIAATTGSFAGALMVVAALALIGALSYL 396 (399)
T ss_pred hhcChhHHHHHHHHHHHHHHHhhhhhhHHhhhhccCCCchhHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999988877655 44455555666555555443
No 28
>COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism]
Probab=99.72 E-value=1.4e-16 Score=144.05 Aligned_cols=270 Identities=21% Similarity=0.278 Sum_probs=165.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHH--HHHhcCcchHHHHHHhhHHHHH-HHHHHhcCCCChHHHHHcCChHHHHHHHHHHHH
Q 018373 19 GRWMVALSAFWTAGTIFEASLA--WVVMTRLNWRWLLAFSSVPSFA-LLLFYGLAPESPRYLCAKARTVDAHRILEKMAF 95 (357)
Q Consensus 19 g~~~~~~~~~~~~G~l~~~~i~--~~~~~~~~WR~~~~~~~~p~l~-~~~~~~~lpESP~wL~~~g~~~~a~~~l~~l~~ 95 (357)
|.+.+..+++.++|..++..+. ..+..+.+||..|.+.++.+++ .++..+.+.++|+ ..|
T Consensus 152 G~~~siWn~shNiGGal~~~~~~la~~~~~~~w~~~f~~pgiiaiival~~~~~~rd~Pq---s~G-------------- 214 (448)
T COG2271 152 GTWWSIWNTSHNIGGALAPLVALLAFFAFHGGWRAAFYFPGIIAIIVALILLFLLRDRPQ---SEG-------------- 214 (448)
T ss_pred CceEEEehhhhhcccchHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHhCCCcc---ccC--------------
Confidence 8889999999999998877776 4555677999999999877665 4667777888885 222
Q ss_pred HcCCCCCCCcccchhhhhhhhhhhhhhcchhhhhhhhhhhhhccchhhhhhhcchhhHHHHHHHHHHHHHHHHHH---HH
Q 018373 96 VNQTKLPPGILVSDKAIKENEESNLLRDTHMLSMTRKITDKLKSGFSSFFMLFSRKLIRTTLLLWVLFFANVFSY---YG 172 (357)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~---y~ 172 (357)
+|+..... .++.+..+ ++ ++++..+.++++.+ |..+.-.+|.+.+.+.+.| |+
T Consensus 215 -----LP~ie~~~--~d~~e~~~--~~--------------~~~~~ls~~~i~~~-YVL~Nk~iW~la~a~vfvYivR~g 270 (448)
T COG2271 215 -----LPPIEEYR--GDPLEIYE--EE--------------KENEGLTAWQIFVK-YVLKNKLIWLLALANVFVYVVRYG 270 (448)
T ss_pred -----CCCHHHhh--cCchhhhh--hh--------------ccCCCccHHHHHHH-HHHcChHHHHHHHHHHHHHHHHHH
Confidence 12110000 00000000 00 00000122333322 2222222334444444444 78
Q ss_pred HHHHhhhhcCCCCCCCcccccCCCCCchhhHHHHHHHHhhhhhHHHHHHHHHHhh--chhHHHHHHH-HHHHHHHHHHHh
Q 018373 173 AVLLTSKLSSGDNKCGSKVLHADKSKDNSLYVDVFIASLAELPGLILSAIIVDKI--GRKLSMVLMF-VSACIFLLPLVF 249 (357)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~d~~--GRR~~~~~~~-~~~~i~~~~~~~ 249 (357)
+.-|.|.+..+. ...+..+. -......=.++++|++++|++.||+ |||....+.+ ++..+++..+..
T Consensus 271 i~dW~p~YL~e~--------k~~s~~~a--~~a~~lfE~agl~G~Ll~GwlSDklfkgrR~p~~~i~~~~i~~~~~~~w~ 340 (448)
T COG2271 271 INDWGPLYLSEV--------KGFSLVKA--NWAISLFEVAGLPGTLLAGWLSDKLFKGRRGPMALIFMLLITASLVLYWL 340 (448)
T ss_pred HhhhHHHHHHHh--------cCCCHHHH--HHHHHHHHHHhhHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHc
Confidence 888887654211 11111111 1222344577899999999999996 7887765433 333334433333
Q ss_pred hh--hhHHHHHHHHHHHHHhhhhhhhhhhhccccccCcchhhHHHHHHHHHHH-HHhHHHHHHHHHHhhcchhhHHHHHH
Q 018373 250 HQ--SAVVTTVLLFGVRMCVTGTITVATIYAPEIYPTSARTTGFGVASSLGKV-GGMVCPLVAVGLVTSCHLRLAVILFE 326 (357)
Q Consensus 250 ~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~ElfPt~~R~~~~~~~~~~~~l-~~~~~p~~~~~l~~~~~~~~~~~~~~ 326 (357)
.. +..+..++++...+++.++.-+.-+.+.|.-|.+.-+++.|+...++.+ |+..+.....++.+..++.+.|+++.
T Consensus 341 ~~~~~~~l~~~~l~~iGf~IyGPqmLiGl~a~e~~pK~AaGtA~Gf~Glf~Yl~Ga~~a~~~~g~i~d~~gW~g~Fi~~~ 420 (448)
T COG2271 341 APNGSYLLDAILLFIIGFLIYGPQMLIGLAAAEFVPKKAAGTATGFVGLFAYLIGAALAGLPLGYIADTWGWDGGFIVLS 420 (448)
T ss_pred CCCccHHHHHHHHHHHHHHHhhHHHHHHHHHhccccHhhccchhchhhhHHHHhhHHhcCCcceeeEecCCCcchHHHHH
Confidence 22 2344455566666777788778889999999999999999999999998 78888877777767667777777777
Q ss_pred HHHHHHHHHHhhc
Q 018373 327 VVFVLAIASSLLF 339 (357)
Q Consensus 327 ~~~~~~~~~~~~~ 339 (357)
+.++++.+.....
T Consensus 421 ~~a~l~~lll~~~ 433 (448)
T COG2271 421 IAALLAILLLLPV 433 (448)
T ss_pred HHHHHHHHHHHHH
Confidence 7766665554443
No 29
>TIGR00890 2A0111 Oxalate/Formate Antiporter.
Probab=99.72 E-value=1.4e-15 Score=141.20 Aligned_cols=126 Identities=18% Similarity=0.235 Sum_probs=85.5
Q ss_pred HHHHhhhhhHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHhhhh-hH-HHHHHHHHHHHHhhhhhhhhhhhccccccC
Q 018373 207 FIASLAELPGLILSAIIVDKIGRKLSMVLMFVSACIFLLPLVFHQS-AV-VTTVLLFGVRMCVTGTITVATIYAPEIYPT 284 (357)
Q Consensus 207 ~i~~~~~~~~~~~~~~l~d~~GRR~~~~~~~~~~~i~~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~ElfPt 284 (357)
.+..+..+++.++.+++.||+|||+.+..+.....+....+..... .. ......+...+......+....+.+|.+|+
T Consensus 247 ~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~ 326 (377)
T TIGR00890 247 SISSIFNGGGRPFLGALSDKIGRQKTMSIVFGISAVGMAAMLFIPMLNDVLFLATVALVFFTWGGTISLFPSLVSDIFGP 326 (377)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHcccchhHHHHHHHHHHHHHhccchhccHHHHHHHhhh
Confidence 4456777889999999999999999988776665555444333221 11 111111112222223344566789999999
Q ss_pred cchhhHHHHHHHHHHHHHhHHHHHHHHHHhhcchhhHHHHHHHHHHHH
Q 018373 285 SARTTGFGVASSLGKVGGMVCPLVAVGLVTSCHLRLAVILFEVVFVLA 332 (357)
Q Consensus 285 ~~R~~~~~~~~~~~~l~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~ 332 (357)
+.|+++.|+.+....+++.++|.+...+.+..+....+.+.+++.+++
T Consensus 327 ~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~f~~~~~~~~~~ 374 (377)
T TIGR00890 327 ANSAANYGFLYTAKAVAGIFGGLIASHALTEIGFEYTFIVTGAFALTS 374 (377)
T ss_pred hhhhhHhHHHHHHHHHHHHHHHHHHHHHHhhhchhhHHHHHHHHHHHh
Confidence 999999999999999999999999888877666555555555554443
No 30
>PRK09556 uhpT sugar phosphate antiporter; Reviewed
Probab=99.72 E-value=3.9e-16 Score=150.13 Aligned_cols=149 Identities=13% Similarity=0.121 Sum_probs=90.6
Q ss_pred HHHHhhhhhHHHHHHHHHHhhchhHHHHHHHHHHHHHHH--HHHhhhhhHHHHHHHHHHHHHhhhhhhhhhhhccccccC
Q 018373 207 FIASLAELPGLILSAIIVDKIGRKLSMVLMFVSACIFLL--PLVFHQSAVVTTVLLFGVRMCVTGTITVATIYAPEIYPT 284 (357)
Q Consensus 207 ~i~~~~~~~~~~~~~~l~d~~GRR~~~~~~~~~~~i~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ElfPt 284 (357)
....++.+++.++.|++.||+|||+.+.....+...... .+...++.....+..+...++..++....+....|.+|.
T Consensus 301 ~~~~~~~~ig~~~~G~lsDr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~p~ 380 (467)
T PRK09556 301 TLFEIGALVGSLLWGWLSDLANGRRALVACIALALIIFTLGVYQHATSEYMYLASLFALGFLVFGPQLLIGVAAVGFVPK 380 (467)
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHhhHHHHHHHHHHhhcch
Confidence 345667889999999999999999876554333222211 111112221221222222222223333334667799999
Q ss_pred cchhhHHHHHHHHHHH-HHhHHHHHHHHHHh------------hcchhhHHHHHHHHHHHHHHHHhhc-cccccCcchhh
Q 018373 285 SARTTGFGVASSLGKV-GGMVCPLVAVGLVT------------SCHLRLAVILFEVVFVLAIASSLLF-PFETMGRELKD 350 (357)
Q Consensus 285 ~~R~~~~~~~~~~~~l-~~~~~p~~~~~l~~------------~~~~~~~~~~~~~~~~~~~~~~~~~-~pet~~~~l~e 350 (357)
+.|+++.|+.+.++.+ ++.++|.+...+.+ ..+....+.++.++.+++.+...+. ..|+|...-|+
T Consensus 381 ~~~g~a~gi~~~~g~l~g~~~~~~~~G~i~~~~~~g~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 460 (467)
T PRK09556 381 KAIGVANGIKGTFAYLFGDSFAKVGLGMIADPTKNGTPIFGYTLTGWAGTFAALDIAAIGCICLMAIVAVMEERKIRREK 460 (467)
T ss_pred hhHHHHHHHHHHHHHHHhHHHHhhhHHHHhcccccccccccccccChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Confidence 9999999999999997 66899999998887 2334445556666666665554443 24665444455
Q ss_pred hHhhh
Q 018373 351 TVDAI 355 (357)
Q Consensus 351 ~~~~~ 355 (357)
-++++
T Consensus 461 ~~~~~ 465 (467)
T PRK09556 461 KIQQL 465 (467)
T ss_pred hhhhc
Confidence 55543
No 31
>TIGR00899 2A0120 sugar efflux transporter. This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria.
Probab=99.71 E-value=8.4e-15 Score=136.44 Aligned_cols=126 Identities=15% Similarity=0.219 Sum_probs=81.2
Q ss_pred HhhhhhHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhhhhccccccCcchhh
Q 018373 210 SLAELPGLILSAIIVDKIGRKLSMVLMFVSACIFLLPLVFHQSAVVTTVLLFGVRMCVTGTITVATIYAPEIYPTSARTT 289 (357)
Q Consensus 210 ~~~~~~~~~~~~~l~d~~GRR~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ElfPt~~R~~ 289 (357)
.....++.++.+++.||+|||+.+..+..+..+....+...++............++.....+....+..|.+|.+ |++
T Consensus 245 ~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~-~~~ 323 (375)
T TIGR00899 245 AGLEIPFMLLAGYLIKRFGKRRLMLLAALAGVAFYTGLAADNSLWALLMLQLLNAIFIGILAGIGMLYFQDLMPGR-AGA 323 (375)
T ss_pred HHHHHHHHHhHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcch-hhH
Confidence 3445667788999999999999887766554443333222222222111111222222233455667889999986 459
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHH
Q 018373 290 GFGVASSLGKVGGMVCPLVAVGLVTSCHLRLAVILFEVVFVLAIASS 336 (357)
Q Consensus 290 ~~~~~~~~~~l~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 336 (357)
++++.+....++..++|.+...+.+..+....+++.+++.+++.+..
T Consensus 324 ~~~~~~~~~~~g~~~g~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~ 370 (375)
T TIGR00899 324 ATTLYTNTGRVGWIIAGSVGGILAERWSYHAVYWFAIVMLIVALFCL 370 (375)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHH
Confidence 99999999999999999998887776655555666666656555544
No 32
>PRK05122 major facilitator superfamily transporter; Provisional
Probab=99.70 E-value=1.9e-14 Score=135.46 Aligned_cols=142 Identities=12% Similarity=0.084 Sum_probs=93.8
Q ss_pred HHHhhhhhHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhhhhccccccCcch
Q 018373 208 IASLAELPGLILSAIIVDKIGRKLSMVLMFVSACIFLLPLVFHQSAVVTTVLLFGVRMCVTGTITVATIYAPEIYPTSAR 287 (357)
Q Consensus 208 i~~~~~~~~~~~~~~l~d~~GRR~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ElfPt~~R 287 (357)
...++.+++.++.+++.||+|||+.+..+..+..+....+...++............+.....++.......|.+|.+.|
T Consensus 257 ~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~ 336 (399)
T PRK05122 257 LFGVAFVGARLLFGNLINRLGGLRVAIVSLLVEILGLLLLWLAPSPWMALIGAALTGFGFSLVFPALGVEAVKRVPPQNR 336 (399)
T ss_pred HHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhHHHHHHHHHHHHHHhCCHHHH
Confidence 34566678889999999999999988776665555444333333222222211222222222334444566789999999
Q ss_pred hhHHHHHHHHHHHHHhHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHHhhccccccCcchhh
Q 018373 288 TTGFGVASSLGKVGGMVCPLVAVGLVTSCHLRLAVILFEVVFVLAIASSLLFPFETMGRELKD 350 (357)
Q Consensus 288 ~~~~~~~~~~~~l~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~pet~~~~l~e 350 (357)
+++.|+.+....++..++|.+...+.+..+....+.+.+++.+++.++.++ .++.++++.+|
T Consensus 337 g~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 398 (399)
T PRK05122 337 GAALGAYSVFLDLSLGITGPLAGLVASWFGYPSIFLAAALAALLGLALTWL-LYRRAPRAVPE 398 (399)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHH-hcccccccCCC
Confidence 999999999999988888888887777666555666666666666555555 45666666665
No 33
>PRK03545 putative arabinose transporter; Provisional
Probab=99.69 E-value=1.6e-14 Score=135.66 Aligned_cols=142 Identities=13% Similarity=0.073 Sum_probs=86.3
Q ss_pred HHHHhhhhhHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhhhhccccccCcc
Q 018373 207 FIASLAELPGLILSAIIVDKIGRKLSMVLMFVSACIFLLPLVFHQSAVVTTVLLFGVRMCVTGTITVATIYAPEIYPTSA 286 (357)
Q Consensus 207 ~i~~~~~~~~~~~~~~l~d~~GRR~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ElfPt~~ 286 (357)
.+..++.+++.++.+++.||+|||.....................+........+...+...+..........|..| +.
T Consensus 248 ~~~~~~~~~g~~~~g~l~dr~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~-~~ 326 (390)
T PRK03545 248 LLFGGAGIIGSVLFSRLGNRHPSGFLLIAIALLLVCLLLLLPAANSEWHLSVLSIFWGIAIMCIGLAMQVKVLKLAP-DA 326 (390)
T ss_pred HHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHhcchHHHHHHHHHhCC-Cc
Confidence 34567789999999999999999876544333322222211222222211111111112212222334456667877 58
Q ss_pred hhhHHHHHHHHHHHHHhHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHHhhccccccCcchhh
Q 018373 287 RTTGFGVASSLGKVGGMVCPLVAVGLVTSCHLRLAVILFEVVFVLAIASSLLFPFETMGRELKD 350 (357)
Q Consensus 287 R~~~~~~~~~~~~l~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~pet~~~~l~e 350 (357)
|+++.|+.+...+++...+|.+.+.+.+..+....+.+.+.+.+++.++.+... .....++||
T Consensus 327 ~~~~~g~~~~~~~~g~~~G~~~~G~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 389 (390)
T PRK03545 327 TDVAMALFSGIFNIGIGAGALLGNQVSLHLGLSSIGYVGAALALAALVWSILIF-RRFPVTLEE 389 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHHHHHHHHc-cccchhhcc
Confidence 899999999999999999999999888877666666666666667666666554 233344444
No 34
>TIGR00712 glpT glycerol-3-phosphate transporter. This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar.
Probab=99.69 E-value=3.2e-15 Score=142.62 Aligned_cols=139 Identities=16% Similarity=0.197 Sum_probs=86.1
Q ss_pred HHHHhhhhhHHHHHHHHHHhhchhHHHHHHHHHH---HHHHHHHHhh-h-hhHHHHHHHHHHHHHhhhhhhhhhhhcccc
Q 018373 207 FIASLAELPGLILSAIIVDKIGRKLSMVLMFVSA---CIFLLPLVFH-Q-SAVVTTVLLFGVRMCVTGTITVATIYAPEI 281 (357)
Q Consensus 207 ~i~~~~~~~~~~~~~~l~d~~GRR~~~~~~~~~~---~i~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~El 281 (357)
.+..+..+++.++++++.||+|||+....+.... .+....+... . +........+...+...++.........|.
T Consensus 294 ~~~~~~~~ig~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 373 (438)
T TIGR00712 294 FLYEYAGIPGTLLCGWMSDKVFKGNRGATGVFFMTLVTIAVIVYWMNPAGNPLVDMICMIVIGFLIYGPVMLIGLHALEL 373 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccCcccHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHccHHHHHHHHHHHh
Confidence 3456678899999999999996433222221111 1111111111 1 111111112222222122222234567899
Q ss_pred ccCcchhhHHHHHHHHHHHHH-hHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHHhhccccccC
Q 018373 282 YPTSARTTGFGVASSLGKVGG-MVCPLVAVGLVTSCHLRLAVILFEVVFVLAIASSLLFPFETMG 345 (357)
Q Consensus 282 fPt~~R~~~~~~~~~~~~l~~-~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~pet~~ 345 (357)
+|.+.|+++.|+.+.++.+++ .++|.+.+.+.+..+....+.+..+.++++.+..++.+||.|+
T Consensus 374 ~~~~~~g~~~g~~~~~~~~gg~~~gp~l~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 438 (438)
T TIGR00712 374 APKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIVVMIGEKR 438 (438)
T ss_pred cChhheeeehhhhchHHHhhhhhhcchhHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHhhccC
Confidence 999999999999999998875 5789998888887665666777777777888888888888763
No 35
>PRK11010 ampG muropeptide transporter; Validated
Probab=99.68 E-value=3.1e-14 Score=137.53 Aligned_cols=258 Identities=16% Similarity=0.124 Sum_probs=140.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhc-CcchHHHHHHhhHHHHHHHHHHhcCCCChHHHHHcCChHHHHHHHHHHHHHc
Q 018373 19 GRWMVALSAFWTAGTIFEASLAWVVMT-RLNWRWLLAFSSVPSFALLLFYGLAPESPRYLCAKARTVDAHRILEKMAFVN 97 (357)
Q Consensus 19 g~~~~~~~~~~~~G~l~~~~i~~~~~~-~~~WR~~~~~~~~p~l~~~~~~~~lpESP~wL~~~g~~~~a~~~l~~l~~~~ 97 (357)
|+..+..+.++.+|.+++..+...+.+ .++||..|.+.++..++..+..+++||+|+.. +.++..
T Consensus 142 g~~~~i~~~g~~lG~llg~~l~~~l~~~~~GWr~~f~i~a~l~ll~~l~~~~~~e~~~~~----~~~~~~---------- 207 (491)
T PRK11010 142 GAGAAISVLGYRLAMLVSGGLALWLADRYLGWQGMYWLMAALLIPCIIATLLAPEPTDTI----PVPKTL---------- 207 (491)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHHHHhcCCCcccc----ccccch----------
Confidence 777777788888888887766655555 46999999998888777777777789976420 000000
Q ss_pred CCCCCCCcccchhhhhhhhhhhhhhcchhhhhhhhhhhhhccchhhhhhhcchhhHHHHHHHHHHHHHHHHHHHHHHHH-
Q 018373 98 QTKLPPGILVSDKAIKENEESNLLRDTHMLSMTRKITDKLKSGFSSFFMLFSRKLIRTTLLLWVLFFANVFSYYGAVLL- 176 (357)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~y~~~~~- 176 (357)
++ . ...+++++++++.....+...+..... .+....+
T Consensus 208 ------------~~----~-----------------------~~~~l~~~~~~~~~~~~ll~~~l~~~~---~~~~~~~~ 245 (491)
T PRK11010 208 ------------EQ----A-----------------------VVAPLRDFFGRNNAWLILLLIVLYKLG---DAFAMSLT 245 (491)
T ss_pred ------------hh----h-----------------------HHHHHHHHHcCcCHHHHHHHHHHHHHH---HHHHHHHH
Confidence 00 0 000122333333222222222111111 1111111
Q ss_pred hhhhcCCCCCCCcccccCCCCCchhhHHHHHHHHhhhhhHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHH---Hhhhhh
Q 018373 177 TSKLSSGDNKCGSKVLHADKSKDNSLYVDVFIASLAELPGLILSAIIVDKIGRKLSMVLMFVSACIFLLPL---VFHQSA 253 (357)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~d~~GRR~~~~~~~~~~~i~~~~~---~~~~~~ 253 (357)
.+.+.+.. ..+..+.. ........++.++|.++++++.||+|||+.++...++..+....+ .....+
T Consensus 246 ~~~l~~~~---------G~s~~~~g-~~~~~~g~i~~iiG~ll~G~L~dr~g~~~~l~i~~~l~~l~~l~~~~l~~~~~~ 315 (491)
T PRK11010 246 TTFLIRGV---------GFDAGEVG-LVNKTLGLLATIVGALYGGILMQRLSLFRALMIFGILQGVSNAGYWLLSITDKN 315 (491)
T ss_pred HHHHHHhc---------CCCHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 12221100 00111111 111123345778999999999999999888766554433322211 121111
Q ss_pred HHH-HHHHHHHHHHhhhhhhhhhhhccccccCcchhhHHHHHHHHHHHHHhHHHHHHHHHHhhcchhhHHHHHHHHHHHH
Q 018373 254 VVT-TVLLFGVRMCVTGTITVATIYAPEIYPTSARTTGFGVASSLGKVGGMVCPLVAVGLVTSCHLRLAVILFEVVFVLA 332 (357)
Q Consensus 254 ~~~-~~~~~~~~~~~~~~~~~~~~~~~ElfPt~~R~~~~~~~~~~~~l~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~ 332 (357)
... ....+...++.....+..+.+..++.|.+.+++..|+.+....++..+.+.+.+.+.+..+....|.+.+++++++
T Consensus 316 ~~~l~~~~~l~~~~~g~~~~~~~a~~~~l~~~~~~~t~~gl~~s~~~lg~~~~~~~~G~l~~~~G~~~~f~~~~~~~l~~ 395 (491)
T PRK11010 316 LYSMGAAVFFENLCGGMGTAAFVALLMTLCNKSFSATQFALLSALSAVGRVYVGPVAGWFVEAHGWPTFYLFSVAAAVPG 395 (491)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHH
Confidence 111 1111111111122234567888899999999999999999999888878778888888766555566666666666
Q ss_pred HHHHhhccccc
Q 018373 333 IASSLLFPFET 343 (357)
Q Consensus 333 ~~~~~~~~pet 343 (357)
.+..++. +++
T Consensus 396 l~~~~~~-~~~ 405 (491)
T PRK11010 396 LLLLLVC-RQT 405 (491)
T ss_pred HHHHHHH-Hhc
Confidence 5555544 443
No 36
>PRK09705 cynX putative cyanate transporter; Provisional
Probab=99.68 E-value=2.6e-14 Score=134.40 Aligned_cols=142 Identities=11% Similarity=0.096 Sum_probs=96.1
Q ss_pred HHHHhhhhhHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHh-hhhhHHHHHHHHHHHHHhhhhhhhhhhhccccc-cC
Q 018373 207 FIASLAELPGLILSAIIVDKIGRKLSMVLMFVSACIFLLPLVF-HQSAVVTTVLLFGVRMCVTGTITVATIYAPEIY-PT 284 (357)
Q Consensus 207 ~i~~~~~~~~~~~~~~l~d~~GRR~~~~~~~~~~~i~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Elf-Pt 284 (357)
.+..++.+++.++.+++.||+|||+....+..+..+....+.. ..+.... ..+...+.....++.......+.+ |+
T Consensus 247 ~~~~i~~i~g~~~~g~l~~r~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~--~~~l~g~g~g~~~~~~~~~~~~~~~~~ 324 (393)
T PRK09705 247 ALMTLGQAAGALLMPAMARHQDRRKLLMLALVLQLVGFCGFIWLPLQLPVL--WAMVCGLGLGGAFPLCLLLALDHSVQP 324 (393)
T ss_pred HHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHccchHHHH--HHHHHHHhccchHHHHHHHHHhhcCCH
Confidence 4556788999999999999999999887776555444333222 2222111 111112222233344555555666 46
Q ss_pred cchhhHHHHHHHHHHHHHhHHHHHHHHHHhhcch-hhHHHHHHHHHHHHHHHHhhccccccCcchhh
Q 018373 285 SARTTGFGVASSLGKVGGMVCPLVAVGLVTSCHL-RLAVILFEVVFVLAIASSLLFPFETMGRELKD 350 (357)
Q Consensus 285 ~~R~~~~~~~~~~~~l~~~~~p~~~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~pet~~~~l~e 350 (357)
+.|++..|+.+.++.+++.++|.+..++.+..+. ...+.+...++++..++.+.+.|||++|...+
T Consensus 325 ~~~g~~~g~~~~~~~~~~~~gp~~~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 391 (393)
T PRK09705 325 AIAGKLVAFMQGIGFIIAGLAPWFSGVLRSISGNYLMDWAFHALCVVGLMIITLRFAPARFPQLWVK 391 (393)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHhccccccchhcc
Confidence 8999999999999999999999999988887653 34455556666677777788899999987643
No 37
>PRK12382 putative transporter; Provisional
Probab=99.65 E-value=9.3e-14 Score=130.52 Aligned_cols=132 Identities=17% Similarity=0.054 Sum_probs=89.5
Q ss_pred HHHhhhhhHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhhhhccccccCcch
Q 018373 208 IASLAELPGLILSAIIVDKIGRKLSMVLMFVSACIFLLPLVFHQSAVVTTVLLFGVRMCVTGTITVATIYAPEIYPTSAR 287 (357)
Q Consensus 208 i~~~~~~~~~~~~~~l~d~~GRR~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ElfPt~~R 287 (357)
...++.+++.++.+++.||+|||+.+..+..+..+....+....+............+......+.......|.+|.+.|
T Consensus 257 ~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~ 336 (392)
T PRK12382 257 AFGGAFVLMRVLFGWMPDRFGGVKVAIVSLLVETVGLLLLWLAPTAWVALAGAALTGAGCSLIFPALGVEVVKRVPSQVR 336 (392)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCeehHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhHHHHHHHHHHHhcCHHHH
Confidence 34556678888999999999999988776665554443333322222211111122222222334555677899999999
Q ss_pred hhHHHHHHHHHHHHHhHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHHhhc
Q 018373 288 TTGFGVASSLGKVGGMVCPLVAVGLVTSCHLRLAVILFEVVFVLAIASSLLF 339 (357)
Q Consensus 288 ~~~~~~~~~~~~l~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 339 (357)
+++.|+.+....+++.++|.+...+.+..+....+.+.+++.+++.+..++.
T Consensus 337 g~~~g~~~~~~~~g~~ig~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~ 388 (392)
T PRK12382 337 GTALGGYAAFQDIAYGVSGPLAGMLATSFGYPSVFLAGAISAVLGIIVTILS 388 (392)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHhh
Confidence 9999999999999999999999888877666666777777777666655544
No 38
>cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3
Probab=99.64 E-value=5.7e-14 Score=128.96 Aligned_cols=133 Identities=23% Similarity=0.336 Sum_probs=96.0
Q ss_pred HHHHHhhhhhHHHHHHHHHHhhchhH-HHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhhhhccccccC
Q 018373 206 VFIASLAELPGLILSAIIVDKIGRKL-SMVLMFVSACIFLLPLVFHQSAVVTTVLLFGVRMCVTGTITVATIYAPEIYPT 284 (357)
Q Consensus 206 ~~i~~~~~~~~~~~~~~l~d~~GRR~-~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ElfPt 284 (357)
.....++..++.++.+++.||+|||+ .+..+..+..+........++........+...+......+....+..|.+|.
T Consensus 217 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 296 (352)
T cd06174 217 LSLFGLGGILGALLGGLLSDRLGRRRLLLLIGLLLAALGLLLLALAPSLALLLVALLLLGFGLGFAFPALLTLASELAPP 296 (352)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhccchhHHHHHHhhcCH
Confidence 34567778899999999999999999 87777766665555444333222222222223333344557788999999999
Q ss_pred cchhhHHHHHHHHHHHHHhHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHHhh
Q 018373 285 SARTTGFGVASSLGKVGGMVCPLVAVGLVTSCHLRLAVILFEVVFVLAIASSLL 338 (357)
Q Consensus 285 ~~R~~~~~~~~~~~~l~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 338 (357)
+.|++..|+.+....+++.++|.+...+.+..+....+.+.+++.+++.++.++
T Consensus 297 ~~~~~~~~~~~~~~~~~~~i~~~i~g~l~~~~~~~~~~~~~~~~~~i~~i~~~~ 350 (352)
T cd06174 297 EARGTASGLFNTFGSLGGALGPLLAGLLLDTGGYGGVFLILAALALLAALLLLL 350 (352)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcchHHHHHHHHHHHHHHHhee
Confidence 999999999999999999999999988876656566677777777766555443
No 39
>PRK15011 sugar efflux transporter B; Provisional
Probab=99.64 E-value=1.1e-13 Score=130.06 Aligned_cols=132 Identities=12% Similarity=0.183 Sum_probs=80.1
Q ss_pred HhhhhhHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhhhhccccccCcchhh
Q 018373 210 SLAELPGLILSAIIVDKIGRKLSMVLMFVSACIFLLPLVFHQSAVVTTVLLFGVRMCVTGTITVATIYAPEIYPTSARTT 289 (357)
Q Consensus 210 ~~~~~~~~~~~~~l~d~~GRR~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ElfPt~~R~~ 289 (357)
....+++.++.+++.||+|||+.+..+.....+........++........+...+......+....+..|.+|.+ |++
T Consensus 262 ~~~~i~~~~~~G~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~g~~~~~~~~~~~~~~p~~-~g~ 340 (393)
T PRK15011 262 AGLEIPTMLIAGYFAKRLGKRFLMRVAAVAGVCFYAGMLMAHSPAILLGLQLLNAIYIGILGGIGMLYFQDLMPGQ-AGS 340 (393)
T ss_pred HHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC-cch
Confidence 4556778899999999999999877655444433322222222222111111111111112234456778999975 999
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHHhhccccc
Q 018373 290 GFGVASSLGKVGGMVCPLVAVGLVTSCHLRLAVILFEVVFVLAIASSLLFPFET 343 (357)
Q Consensus 290 ~~~~~~~~~~l~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~pet 343 (357)
+.++.+....+++.++|.+.+.+.+..+....+.+.+++.+++ ++.++..|||
T Consensus 341 ~~~~~~~~~~lg~~~g~~l~G~i~~~~g~~~~~~~~~~~~~~~-~~~~~~~~~~ 393 (393)
T PRK15011 341 ATTLYTNTSRVGWIIAGSLAGIVAEIWNYHAVFWFALVMIIAT-LFCLLRIKDV 393 (393)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH-HHHHHhhcCC
Confidence 9999988889999999999888777655444444444444444 4444445664
No 40
>TIGR00900 2A0121 H+ Antiporter protein.
Probab=99.63 E-value=1.3e-13 Score=127.53 Aligned_cols=109 Identities=16% Similarity=0.078 Sum_probs=76.8
Q ss_pred HHHHhhhhhHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHhhhh-hHHHHHHHHHHHHHhhhhhhhhhhhccccccCc
Q 018373 207 FIASLAELPGLILSAIIVDKIGRKLSMVLMFVSACIFLLPLVFHQS-AVVTTVLLFGVRMCVTGTITVATIYAPEIYPTS 285 (357)
Q Consensus 207 ~i~~~~~~~~~~~~~~l~d~~GRR~~~~~~~~~~~i~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ElfPt~ 285 (357)
....++.+++.++.+++.||.|||+.+..+..+.++.........+ .....+..+...+......+....+..|.+|.+
T Consensus 254 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 333 (365)
T TIGR00900 254 AAFGLGALLGALLLGLLGRYFKRMALMTGAIFVIGLAILVVGLTPPNFPLFLVLWFAIGVGYGPINVPQGTLLQRRVPAE 333 (365)
T ss_pred HHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHH
Confidence 3456677888999999999999999888766655555444433322 222112222222222333456778899999999
Q ss_pred chhhHHHHHHHHHHHHHhHHHHHHHHHHhh
Q 018373 286 ARTTGFGVASSLGKVGGMVCPLVAVGLVTS 315 (357)
Q Consensus 286 ~R~~~~~~~~~~~~l~~~~~p~~~~~l~~~ 315 (357)
.|+++.|+.+.+..+++.++|.+...+.+.
T Consensus 334 ~~g~~~~~~~~~~~~~~~~g~~~~g~l~~~ 363 (365)
T TIGR00900 334 LLGRVFGAQFSLSHAAWPLGLILAGPLADH 363 (365)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999888877654
No 41
>PLN00028 nitrate transmembrane transporter; Provisional
Probab=99.63 E-value=6.5e-14 Score=134.95 Aligned_cols=130 Identities=14% Similarity=0.125 Sum_probs=76.3
Q ss_pred HHHHhhhhhHHHHHHHHHHhhchhH-------HHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhhhhcc
Q 018373 207 FIASLAELPGLILSAIIVDKIGRKL-------SMVLMFVSACIFLLPLVFHQSAVVTTVLLFGVRMCVTGTITVATIYAP 279 (357)
Q Consensus 207 ~i~~~~~~~~~~~~~~l~d~~GRR~-------~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 279 (357)
.+..++..++.+++|++.||+|||+ .......+.++..+.+....+............++..+..+..+.+.+
T Consensus 295 ~~~~~~~~ig~~~~G~lsDr~~~r~~~~~r~~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 374 (476)
T PLN00028 295 ASFGLMNLFARPAGGYLSDVAARRFGMRGRLWALWIVQTLGGVFCIWLGRANSLGAAIVVMILFSIFVQAACGATFGIVP 374 (476)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHhcCcchhHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHhhhhhcccCc
Confidence 4456778899999999999998762 222222222222222222222222122222222222233455677788
Q ss_pred ccccCcchhhHHHHHHHHHHHHHhHHHHHHHHHHhhc-chhhHHHHHHHHHHHHHHHHhhc
Q 018373 280 EIYPTSARTTGFGVASSLGKVGGMVCPLVAVGLVTSC-HLRLAVILFEVVFVLAIASSLLF 339 (357)
Q Consensus 280 ElfPt~~R~~~~~~~~~~~~l~~~~~p~~~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 339 (357)
|+.| +.|+++.|+.+..+.+++.++|.+.. .+.. +....+++.+++.+++.++.++.
T Consensus 375 ~~~~-~~~g~~~g~~~~~g~lg~~i~~~l~~--~~~~~~y~~~f~~~~~~~~i~~~~~~~~ 432 (476)
T PLN00028 375 FVSR-RSLGVISGLTGAGGNVGAVLTQLLFF--TGSSYSTETGISLMGVMIIACTLPVAFI 432 (476)
T ss_pred ccCh-hhchhhhhhhhccccHHHHHHHHHHH--hcCCccHhhHHHHHHHHHHHHHHHHHhe
Confidence 8766 69999999999988898888887654 2222 23455666676767766665554
No 42
>PRK03699 putative transporter; Provisional
Probab=99.63 E-value=4.9e-14 Score=132.57 Aligned_cols=135 Identities=12% Similarity=0.119 Sum_probs=86.8
Q ss_pred HHhhhhhHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhhhhccccccCcchh
Q 018373 209 ASLAELPGLILSAIIVDKIGRKLSMVLMFVSACIFLLPLVFHQSAVVTTVLLFGVRMCVTGTITVATIYAPEIYPTSART 288 (357)
Q Consensus 209 ~~~~~~~~~~~~~~l~d~~GRR~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ElfPt~~R~ 288 (357)
..++..++.++.+++.||+|||+.+.....+..+.+..+....+........+...++..+.++....+.+|..|.+ ++
T Consensus 250 ~~~~~~ig~~~~g~l~dr~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~-~~ 328 (394)
T PRK03699 250 FWMAYMVGMWIFSFIVRFFDLQRILTVLAGLALVLMYLFVNTDDPSHLLYAILGLGFFSSAIYTTIITLGSQQTKVA-SP 328 (394)
T ss_pred HHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHccCC-CH
Confidence 34567889999999999999999887766555444333333222222222222233333344556666778888755 67
Q ss_pred hHHHHHHHHHHHHHhHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHHhhccccccC
Q 018373 289 TGFGVASSLGKVGGMVCPLVAVGLVTSCHLRLAVILFEVVFVLAIASSLLFPFETMG 345 (357)
Q Consensus 289 ~~~~~~~~~~~l~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~pet~~ 345 (357)
+..+.....+.+++.++|.+..++.+..+....+++.+++..++.+...+ .+.+.+
T Consensus 329 ~~~g~~~~~~~~g~~i~p~~~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 384 (394)
T PRK03699 329 KLVNFILTCGTIGTMLTFVVTSPIVAHFGLQAALLTANGLYAVVFVMCIL-LGFVSK 384 (394)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHhCchhhhhhhHHHHHHHHHHHHH-HHHHHH
Confidence 78889988899999999999998888766555566656665555444333 334433
No 43
>TIGR00881 2A0104 phosphoglycerate transporter family protein.
Probab=99.58 E-value=7.7e-14 Score=129.63 Aligned_cols=111 Identities=21% Similarity=0.298 Sum_probs=69.0
Q ss_pred HHHHhhhhhHHHHHHHHHHhhc-hhHHHHH-HHHH-HHHHHHHHHhh-h-hhHHHHHHHHHHHHHhhhhhhhhhhhcccc
Q 018373 207 FIASLAELPGLILSAIIVDKIG-RKLSMVL-MFVS-ACIFLLPLVFH-Q-SAVVTTVLLFGVRMCVTGTITVATIYAPEI 281 (357)
Q Consensus 207 ~i~~~~~~~~~~~~~~l~d~~G-RR~~~~~-~~~~-~~i~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~El 281 (357)
.+..+..+++.++.+++.||.+ ||+.... .... ....+...... . +........+...++..++....+.+.+|.
T Consensus 259 ~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 338 (379)
T TIGR00881 259 TLYELGGLVGTLLAGWLSDKLFNGRRGPLAVFFMALIIVSLLVYWLNPAANPLMDLICLFALGFLVYGPQMLIGVIASEL 338 (379)
T ss_pred HHHHHHcchhHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHHHhhhhHHHHHHHHHh
Confidence 3456777899999999999863 3333222 2111 11112111111 1 111111222222223334445567789999
Q ss_pred ccCcchhhHHHHHHHHHHHHHhHHHHHHHHHHhhcc
Q 018373 282 YPTSARTTGFGVASSLGKVGGMVCPLVAVGLVTSCH 317 (357)
Q Consensus 282 fPt~~R~~~~~~~~~~~~l~~~~~p~~~~~l~~~~~ 317 (357)
+|++.|+++.|+.+.+..+++.++|.+.+.+.+..+
T Consensus 339 ~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~g 374 (379)
T TIGR00881 339 APKKAAGTAAGFVGFFAYLGGILAGLPLGYLADGFG 374 (379)
T ss_pred cCcchhHHHHHHHHHhhhhhhhhhhhhHHHHHHhhc
Confidence 999999999999999999999999999888877654
No 44
>TIGR00901 2A0125 AmpG-related permease.
Probab=99.58 E-value=5e-13 Score=123.87 Aligned_cols=88 Identities=11% Similarity=0.118 Sum_probs=57.7
Q ss_pred hhhhhHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHhh--h--------hh-HHHHHHHHHHHHHhhhhhhhhhhhcc
Q 018373 211 LAELPGLILSAIIVDKIGRKLSMVLMFVSACIFLLPLVFH--Q--------SA-VVTTVLLFGVRMCVTGTITVATIYAP 279 (357)
Q Consensus 211 ~~~~~~~~~~~~l~d~~GRR~~~~~~~~~~~i~~~~~~~~--~--------~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 279 (357)
+..+++.++++++.||+|||+.+..+.++..+....+.+. . .. .......+...+......+....+..
T Consensus 256 ~~~~~g~~~~g~l~~r~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 335 (356)
T TIGR00901 256 LGAILGGLIGGIIMQPLNILYALLLFGIVQALTNAGFVWLASNGHHDGITFPHLLMLFLTITLEAVTGGLGTVAFVAFLS 335 (356)
T ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhcCcccccccchHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 4567889999999999999998877766655443322221 1 11 11111122222333344567889999
Q ss_pred ccccCcchhhHHHHHHHHH
Q 018373 280 EIYPTSARTTGFGVASSLG 298 (357)
Q Consensus 280 ElfPt~~R~~~~~~~~~~~ 298 (357)
|.+|++.|++..|+.+...
T Consensus 336 ~~~p~~~~g~~~g~~~~~~ 354 (356)
T TIGR00901 336 KLSNPKFGATQMALLSSLS 354 (356)
T ss_pred HhcCCCccHHHHHHHHHHH
Confidence 9999999999999987664
No 45
>PRK11902 ampG muropeptide transporter; Reviewed
Probab=99.57 E-value=3.6e-12 Score=120.22 Aligned_cols=125 Identities=14% Similarity=0.098 Sum_probs=69.1
Q ss_pred hhhhhHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHH---Hhh-hhhHHHHHHHH----HHHHHhhhhhhhhhhhccccc
Q 018373 211 LAELPGLILSAIIVDKIGRKLSMVLMFVSACIFLLPL---VFH-QSAVVTTVLLF----GVRMCVTGTITVATIYAPEIY 282 (357)
Q Consensus 211 ~~~~~~~~~~~~l~d~~GRR~~~~~~~~~~~i~~~~~---~~~-~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~Elf 282 (357)
.+.+++.++++++.||+|||+.+..+..+..+..+.+ ... ++......... ...+......+....+..+.+
T Consensus 257 ~~~i~g~~~~g~l~~r~g~~~~l~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 336 (402)
T PRK11902 257 AATIVGALAGGTLMVRLGLYRSLMLFGVLQAVSNLGYWVLAVTPKHLWTMALAIGIENLCGGMGTAAFVALLMALCNRSF 336 (402)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC
Confidence 4578889999999999999998776555443332222 122 22221111111 111112223455667888888
Q ss_pred cCcchhhHHHHHHHHHHHHHhHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHHhhc
Q 018373 283 PTSARTTGFGVASSLGKVGGMVCPLVAVGLVTSCHLRLAVILFEVVFVLAIASSLLF 339 (357)
Q Consensus 283 Pt~~R~~~~~~~~~~~~l~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 339 (357)
|.+.++. ...+..++...++.+...+.+..+....|.+.+++++++.++++..
T Consensus 337 ~~~~~~~----~~~~~~l~~~~~~~~~G~l~~~~G~~~~f~~~~~~~~~~~~~~~~~ 389 (402)
T PRK11902 337 SATQYAL----LSALASVGRVYVGPTSGYLVEAYGWPGFYLMTVVIALPGLALLWLM 389 (402)
T ss_pred cHHHHHH----HHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHH
Confidence 8766544 3333334444344456666676666555666666666665555443
No 46
>TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter.
Probab=99.57 E-value=6.2e-13 Score=127.86 Aligned_cols=267 Identities=12% Similarity=0.160 Sum_probs=135.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhcC-cchHHHHHHhhHHHHHHHH-HHhcCCCChHHHHHcCChHHHHHHHHHHHHH
Q 018373 19 GRWMVALSAFWTAGTIFEASLAWVVMTR-LNWRWLLAFSSVPSFALLL-FYGLAPESPRYLCAKARTVDAHRILEKMAFV 96 (357)
Q Consensus 19 g~~~~~~~~~~~~G~l~~~~i~~~~~~~-~~WR~~~~~~~~p~l~~~~-~~~~lpESP~wL~~~g~~~~a~~~l~~l~~~ 96 (357)
|+..+....+..+|..++..+...+... .+||..|.+..++.++..+ ...+.||+|+. +.+.++.++ +.+.+.
T Consensus 166 ~~~~~~~~~~~~~g~~i~~~l~~~l~~~~~gw~~~f~i~~~~~~~~~~~~~~~~~~~p~~---~~~~~~~~~--~~i~~~ 240 (465)
T TIGR00894 166 SRLLGMSTSGFQLGTFIFLPISGWLCESWGGWPMIFYVFGIVGCAWSLLWFVFPADDPSI---HPCISKFEK--KYINSS 240 (465)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCeehhhhhHHHHHHHHHHHHHhcCCccc---CCCCCHHHH--HHHHhh
Confidence 7777888888888888887776555556 4999999998887776544 44456788852 111111110 111000
Q ss_pred cCCCCCCCcccchhhhhhhhhhhhhhcchhhhhhhhhhhhhccchhhhhhhcchhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 018373 97 NQTKLPPGILVSDKAIKENEESNLLRDTHMLSMTRKITDKLKSGFSSFFMLFSRKLIRTTLLLWVLFFANVFSYYGAVLL 176 (357)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~y~~~~~ 176 (357)
. +++ . . +.+....++++++++. ........++....++....+
T Consensus 241 ~-----------------~~~-----~--------~----~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~ 283 (465)
T TIGR00894 241 L-----------------QGQ-----K--------G----STRQSLPIKAIPKSLP---VWAIWFAIFGHFWLYTILPTY 283 (465)
T ss_pred c-----------------ccc-----c--------C----CCCCCCCHHHHhcCHH---HHHHHHHHHHHHHHHHHHHHH
Confidence 0 000 0 0 0000112344443322 222233334444445555555
Q ss_pred hhhhcCCCCCCCcccccCCCCCchhhHHHHHHHHhhhhhHHHHHHHHHHhhchhHHH-------HHHHHHH---HHHHHH
Q 018373 177 TSKLSSGDNKCGSKVLHADKSKDNSLYVDVFIASLAELPGLILSAIIVDKIGRKLSM-------VLMFVSA---CIFLLP 246 (357)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~d~~GRR~~~-------~~~~~~~---~i~~~~ 246 (357)
.|.+..+. .+ .+..... + ...+..++..++.++++++.||++||+.. +...... .+..+.
T Consensus 284 lp~~l~~~-------~g-~s~~~~g-~-~~~~~~~~~~i~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 353 (465)
T TIGR00894 284 LPTFISWV-------LR-VSGKENG-L-LSSLPYLFAWLCSIFAGYLADFLKSSKTLSLTAARKIFNGIGGLGPGIFAYA 353 (465)
T ss_pred HHHHHHHH-------hC-cChHHhH-H-HHHHHHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHH
Confidence 55443110 00 1111111 2 12344667788899999999998755321 1111111 111111
Q ss_pred HHh-hhhhHHHHHHHHHHHHHhhhhhhhhhhhccccccCcchhhHHHHHHHHHHHHHhHHHHHHHHHHhhc--c-hhhHH
Q 018373 247 LVF-HQSAVVTTVLLFGVRMCVTGTITVATIYAPEIYPTSARTTGFGVASSLGKVGGMVCPLVAVGLVTSC--H-LRLAV 322 (357)
Q Consensus 247 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ElfPt~~R~~~~~~~~~~~~l~~~~~p~~~~~l~~~~--~-~~~~~ 322 (357)
... ...............++..+..+..+....|..|. .++++.|+.+..+.++++++|.+.+.+.+.. + ....+
T Consensus 354 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~-~~g~~~g~~~~~~~l~~~i~p~l~g~~~~~~~~~~~~~~f 432 (465)
T TIGR00894 354 LPYLSAAFYLTIIILTLANAVSSGPLAGVLINSLDLAPR-FLGFIKGITGLPGFIGGLIASTLAGNILSQDSKNVWLIVF 432 (465)
T ss_pred HHHcCCchHHHHHHHHHHHHHhhhhhhhhhhchhhcChh-HHHHHHHHHHHHHHHHHHHHHHhhheeeCCCCchHHHHHH
Confidence 111 11122222222222222222334455566788876 8999999999999999999999988766532 2 23345
Q ss_pred HHHHHHHHHHHHHHhh
Q 018373 323 ILFEVVFVLAIASSLL 338 (357)
Q Consensus 323 ~~~~~~~~~~~~~~~~ 338 (357)
.+.++..+++.++..+
T Consensus 433 ~~~~~~~~i~~i~~~~ 448 (465)
T TIGR00894 433 LIMAFVNILCVIFYLI 448 (465)
T ss_pred HHHHHHHHHHHHHeee
Confidence 5555566666554443
No 47
>PRK09874 drug efflux system protein MdtG; Provisional
Probab=99.56 E-value=1.1e-12 Score=123.82 Aligned_cols=131 Identities=15% Similarity=0.190 Sum_probs=87.6
Q ss_pred HhhhhhHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhhhhccccccCcchhh
Q 018373 210 SLAELPGLILSAIIVDKIGRKLSMVLMFVSACIFLLPLVFHQSAVVTTVLLFGVRMCVTGTITVATIYAPEIYPTSARTT 289 (357)
Q Consensus 210 ~~~~~~~~~~~~~l~d~~GRR~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ElfPt~~R~~ 289 (357)
.++.+++.+..+++.||+|||+.+..+.....+..+.....++.....+..+...++.....+....+..+..|.+.|++
T Consensus 268 ~l~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~ 347 (408)
T PRK09874 268 GVAALLSAPRLGKLGDRIGPEKILITALIFSVLLLIPMSFVQTPLQLGILRFLLGAADGALLPAVQTLLVYNSSNQIAGR 347 (408)
T ss_pred HHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhHhhHHHHHHHHHHhCCccccee
Confidence 45556777788999999999999887766655544443333322222111112222222233445556678889999999
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHHhhcc
Q 018373 290 GFGVASSLGKVGGMVCPLVAVGLVTSCHLRLAVILFEVVFVLAIASSLLFP 340 (357)
Q Consensus 290 ~~~~~~~~~~l~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 340 (357)
..++.+.+..++..++|.+...+.+..+....+++.+++.+++.+..++..
T Consensus 348 ~~~~~~~~~~~g~~~gp~~~G~l~~~~g~~~~f~~~~~~~l~~~~~~~~~~ 398 (408)
T PRK09874 348 IFSYNQSFRDIGNVTGPLMGAAISANYGFRAVFLVTAGVVLFNAVYSWNSL 398 (408)
T ss_pred eehHHHHHHHHHHHhhHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999988887766666667777777777666665543
No 48
>TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter. GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners.
Probab=99.55 E-value=3e-12 Score=121.91 Aligned_cols=109 Identities=17% Similarity=0.164 Sum_probs=73.4
Q ss_pred HHHhhhhhHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHhh-hhhHHHHHHHHHHHHHhhhhhhhhhhhcccccc---
Q 018373 208 IASLAELPGLILSAIIVDKIGRKLSMVLMFVSACIFLLPLVFH-QSAVVTTVLLFGVRMCVTGTITVATIYAPEIYP--- 283 (357)
Q Consensus 208 i~~~~~~~~~~~~~~l~d~~GRR~~~~~~~~~~~i~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ElfP--- 283 (357)
+..+..+++.++.+++.||+|||+.+..+..+..+....+... .+........+...+......+..+.+.+|..|
T Consensus 265 ~~~i~~ii~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 344 (437)
T TIGR00792 265 IAIVAGLIGVLLFPRLVKKFGRKILFAGGILLMVLGYLIFFFAGSNLPLILVLIILAGFGQNFVTGLVWALVADTVDYGE 344 (437)
T ss_pred HHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhh
Confidence 3467778889999999999999999887766655544433332 222222222222222223345667888888865
Q ss_pred ----CcchhhHHHHHHHHHHHHHhHHHHHHHHHHhhc
Q 018373 284 ----TSARTTGFGVASSLGKVGGMVCPLVAVGLVTSC 316 (357)
Q Consensus 284 ----t~~R~~~~~~~~~~~~l~~~~~p~~~~~l~~~~ 316 (357)
.+.+++..|+.+.+..++..+++.+...+.+..
T Consensus 345 ~~~~~~~~G~~~~~~~~~~~~g~~lg~~i~g~ll~~~ 381 (437)
T TIGR00792 345 WKTGVRAEGLVYSVRTFVRKLGQALAGFLVGLILGII 381 (437)
T ss_pred hhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 567788899999999999999998888777643
No 49
>PRK09528 lacY galactoside permease; Reviewed
Probab=99.55 E-value=8.1e-13 Score=125.39 Aligned_cols=135 Identities=13% Similarity=0.114 Sum_probs=86.9
Q ss_pred HHHhhhhhHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhhhhccccccCcch
Q 018373 208 IASLAELPGLILSAIIVDKIGRKLSMVLMFVSACIFLLPLVFHQSAVVTTVLLFGVRMCVTGTITVATIYAPEIYPTSAR 287 (357)
Q Consensus 208 i~~~~~~~~~~~~~~l~d~~GRR~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ElfPt~~R 287 (357)
+..+...++.++.+++.||+|||+.+..+..+..+......+.++........................+.+|.+|++.|
T Consensus 270 ~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~ 349 (420)
T PRK09528 270 FQVFLEALIMFFAPFIINRIGAKNALLLAGTIMAVRIIGSGFATGPLEVSILKLLHAFEVPFLLVGVFKYITLNFDVRLS 349 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccce
Confidence 34566778899999999999999998776666555444433333332211111111111111123445688999999999
Q ss_pred hhHHHHH-HHHHHHHHhHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHHhhcccc
Q 018373 288 TTGFGVA-SSLGKVGGMVCPLVAVGLVTSCHLRLAVILFEVVFVLAIASSLLFPFE 342 (357)
Q Consensus 288 ~~~~~~~-~~~~~l~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~pe 342 (357)
+++.+.. +..+.++++++|.+...+.+..+....+.+.+++.++..++.++..++
T Consensus 350 a~~~~~~~~~~~~lg~~ig~~~~G~l~~~~G~~~~f~~~~~~~~i~~~~~~~~~~~ 405 (420)
T PRK09528 350 ATIYLVGFQFAKQLGAVFLSTLAGNLYDSIGFQGTYLILGGIVLLFTLISVFTLSG 405 (420)
T ss_pred eeeeeehHHHHHHHHHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHhcC
Confidence 9987764 455678888999998888887665566777777666665555554433
No 50
>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated
Probab=99.54 E-value=1.8e-12 Score=137.99 Aligned_cols=137 Identities=13% Similarity=0.018 Sum_probs=81.2
Q ss_pred HHHHhhhhhHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhhhhccccccCcc
Q 018373 207 FIASLAELPGLILSAIIVDKIGRKLSMVLMFVSACIFLLPLVFHQSAVVTTVLLFGVRMCVTGTITVATIYAPEIYPTSA 286 (357)
Q Consensus 207 ~i~~~~~~~~~~~~~~l~d~~GRR~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ElfPt~~ 286 (357)
....++.+++.++.+++.||+++|+.+.++.++.++..+.+....+.....+..+...++.....+....+..|..|.+.
T Consensus 276 ~~~~ig~~~g~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~ 355 (1146)
T PRK08633 276 AASAIGIGIGSLLAGRLSGRHIELGLVPLGALGLALSLFLLPTAPSLASVLVLFFLFGFSAGLFIVPLNALIQFRAPEKE 355 (1146)
T ss_pred HHHHHHHHHHHHHHHHHhCCceEccchhHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhHHHHHHHhhcCCccc
Confidence 34456778889999999999999888776666555544443332222222222222222222333456788899999999
Q ss_pred hhhHHHHHHHHHHHHHhHHHHHHHHHHhh-cchhhHHHHHHHHHHHHHHHHhhccccc
Q 018373 287 RTTGFGVASSLGKVGGMVCPLVAVGLVTS-CHLRLAVILFEVVFVLAIASSLLFPFET 343 (357)
Q Consensus 287 R~~~~~~~~~~~~l~~~~~p~~~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~pet 343 (357)
|+++.|+.+.+..+++++++.+...+... .+....+++.+.+.++..++.....|++
T Consensus 356 rg~~~~~~~~~~~lg~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 413 (1146)
T PRK08633 356 LGKVLAANNFLQNVGMLLFLALTTLFSGLGLSPAGLFYLIALVTLIGTLYTLLLLPDS 413 (1146)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 99999999999888877766655443321 1122233333444444444444444443
No 51
>TIGR00897 2A0118 polyol permease family. This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis.
Probab=99.54 E-value=7.9e-12 Score=117.93 Aligned_cols=129 Identities=16% Similarity=0.235 Sum_probs=81.0
Q ss_pred HHHhhhhhHHHHHHHHHHhhchhHHHHH-HHHHHHHHHHHHHh-----hhhhHHHHHHHHHHHHHhhhhhhhhhhhcccc
Q 018373 208 IASLAELPGLILSAIIVDKIGRKLSMVL-MFVSACIFLLPLVF-----HQSAVVTTVLLFGVRMCVTGTITVATIYAPEI 281 (357)
Q Consensus 208 i~~~~~~~~~~~~~~l~d~~GRR~~~~~-~~~~~~i~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~El 281 (357)
+..++..++.++.+++.||+|||+.+.. ......+....+.. .++........+...++..+..+ .....+|.
T Consensus 265 ~~~~~~~ig~~~~g~l~dr~~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~-~~~~~~~~ 343 (402)
T TIGR00897 265 TFFFTNIVFNVIFGIVGDKLGWMNTVRWFGGVGCGIFTLALYYIPQHFGHSFAVALIIAIALGIFLAGYVP-LAAVFPTL 343 (402)
T ss_pred HHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHHHHHHH-HHHHHHhh
Confidence 4457788999999999999999887642 22222222212111 11111111222222222222222 33456787
Q ss_pred ccCcchhhHHHHHHHHHHHHHhHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHHhh
Q 018373 282 YPTSARTTGFGVASSLGKVGGMVCPLVAVGLVTSCHLRLAVILFEVVFVLAIASSLL 338 (357)
Q Consensus 282 fPt~~R~~~~~~~~~~~~l~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 338 (357)
.|. .|+++.|+.+....+++.++|.+...+.+..+....+++.+++.+++.+...+
T Consensus 344 ~~~-~~g~~~g~~~~~~~lg~~~gp~i~g~l~~~~g~~~~~~~~a~~~~i~~~~~~~ 399 (402)
T TIGR00897 344 APK-HKGAAMSVLNLSAGLSAFLAPAIAVLFIGFFGAIGVVWIFAALYVVSAFLTAF 399 (402)
T ss_pred Ccc-hhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHH
Confidence 775 79999999999999999999999988888766666677777777676666555
No 52
>TIGR00889 2A0110 nucleoside transporter. This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli.
Probab=99.53 E-value=4.1e-12 Score=120.45 Aligned_cols=141 Identities=9% Similarity=0.098 Sum_probs=95.9
Q ss_pred HHHHhhhhhHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHhhh-hh-HHH--HHHHHHHHHHhhhhhhhhhhhccccc
Q 018373 207 FIASLAELPGLILSAIIVDKIGRKLSMVLMFVSACIFLLPLVFHQ-SA-VVT--TVLLFGVRMCVTGTITVATIYAPEIY 282 (357)
Q Consensus 207 ~i~~~~~~~~~~~~~~l~d~~GRR~~~~~~~~~~~i~~~~~~~~~-~~-~~~--~~~~~~~~~~~~~~~~~~~~~~~Elf 282 (357)
.+..+.++++.++.+++.||+|||+++..+.++.++....+.... .. ... ....+...+......+....+.+|.+
T Consensus 258 ~~~~i~~i~~~~~~g~l~dr~g~r~~l~~~~~~~~v~~~l~~~~~~~~~~~~~l~l~~~l~g~~~~~~~~~~~~~i~~~~ 337 (418)
T TIGR00889 258 SLSQFSEIFFILTIPFFLKRFGIKKVMLLSLVAWALRFGFFAYGDPEYFGYALLFLSMIVYGCAFDFFNISGSVFVEKEV 337 (418)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Confidence 445667788889999999999999999888777666543333321 11 111 11111111111222345567899999
Q ss_pred cCcchhhHHHHHHH-HHHHHHhHHHHHHHHHHhhcc------hhhHHHHHHHHHHHHHHHHhhccccccCcc
Q 018373 283 PTSARTTGFGVASS-LGKVGGMVCPLVAVGLVTSCH------LRLAVILFEVVFVLAIASSLLFPFETMGRE 347 (357)
Q Consensus 283 Pt~~R~~~~~~~~~-~~~l~~~~~p~~~~~l~~~~~------~~~~~~~~~~~~~~~~~~~~~~~pet~~~~ 347 (357)
|++.|+++.|+.+. ...+++.++|.+.+.+.+..+ ....+.+.+++.+++.+..+++.||+++.-
T Consensus 338 p~~~~g~~~g~~~~~~~~lg~~iGp~l~G~l~~~~g~~~~~~~~~~f~~~~~~~~i~~~l~~~~~~~~~~~~ 409 (418)
T TIGR00889 338 PVHIRASAQGLFTLMCNGFGSLLGYILSGVMVEKMFAYGTFDWQTMWLFFAGYIAILAVLFMIFFKYSHNAI 409 (418)
T ss_pred CHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccccCCchHHHHHHHHHHHHHHHHHHHHHhCCcccCC
Confidence 99999999999974 567888999999988877643 234566677777777777888888887654
No 53
>TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily. This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033.
Probab=99.53 E-value=1.5e-11 Score=114.97 Aligned_cols=103 Identities=17% Similarity=0.132 Sum_probs=62.3
Q ss_pred HHHHhhhhhHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHh---hh-hhHHHH-HHHHHHHHHhhhhhhhhhhhcccc
Q 018373 207 FIASLAELPGLILSAIIVDKIGRKLSMVLMFVSACIFLLPLVF---HQ-SAVVTT-VLLFGVRMCVTGTITVATIYAPEI 281 (357)
Q Consensus 207 ~i~~~~~~~~~~~~~~l~d~~GRR~~~~~~~~~~~i~~~~~~~---~~-~~~~~~-~~~~~~~~~~~~~~~~~~~~~~El 281 (357)
....+..+++.++.+++.||+|||+.+..+..+..+....+.. .. ...... ...+...+......+.......|.
T Consensus 249 ~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 328 (385)
T TIGR00710 249 ALNIIAMIFGGFLNGRFIKKWGAKSLLRMGLILFAVSAVLLEITAILGLGSWAMIIGPMMFVGIGNSMISSIAMAYALED 328 (385)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 3456677889999999999999999887665544433322222 11 111111 111111122223345566778899
Q ss_pred ccCcchhhHHHHHHHHHHHHHhHHHHHHH
Q 018373 282 YPTSARTTGFGVASSLGKVGGMVCPLVAV 310 (357)
Q Consensus 282 fPt~~R~~~~~~~~~~~~l~~~~~p~~~~ 310 (357)
+| +.|+++.++.+.+...++.+.+.+..
T Consensus 329 ~~-~~~g~~~~~~~~~~~~~g~i~~~~~~ 356 (385)
T TIGR00710 329 FP-HVAGTASALFGTLRLVLGAIVGYLVS 356 (385)
T ss_pred Cc-ccchHHHHHHHHHHHHHHHHHHHHHH
Confidence 98 57999999998888765555544444
No 54
>COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism]
Probab=99.52 E-value=9.5e-12 Score=114.05 Aligned_cols=248 Identities=18% Similarity=0.228 Sum_probs=147.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHhhHHHHHH-HHHHhcCCCChHHHHHcCChHHHHHHHHHHHHHc
Q 018373 19 GRWMVALSAFWTAGTIFEASLAWVVMTRLNWRWLLAFSSVPSFAL-LLFYGLAPESPRYLCAKARTVDAHRILEKMAFVN 97 (357)
Q Consensus 19 g~~~~~~~~~~~~G~l~~~~i~~~~~~~~~WR~~~~~~~~p~l~~-~~~~~~lpESP~wL~~~g~~~~a~~~l~~l~~~~ 97 (357)
++.++....+..+..+++..++-.+.+.+|||..|.+-...+++. +.....+| |+ +.+++
T Consensus 136 ~~Aiaiv~~G~tlA~v~GvPLGt~ig~~~GWR~~F~~ia~l~ll~~~~~~~~lP--~~------~~~~~----------- 196 (394)
T COG2814 136 GRALALVFTGLTLATVLGVPLGTFLGQLFGWRATFLAIAVLALLALLLLWKLLP--PS------EISGS----------- 196 (394)
T ss_pred hhHHHHHHHHHHHHHHHhccHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhCC--Cc------cCCCC-----------
Confidence 888888888999999888888888888899999999988777765 45666788 32 00000
Q ss_pred CCCCCCCcccchhhhhhhhhhhhhhcchhhhhhhhhhhhhccchhhhhhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHh
Q 018373 98 QTKLPPGILVSDKAIKENEESNLLRDTHMLSMTRKITDKLKSGFSSFFMLFSRKLIRTTLLLWVLFFANVFSYYGAVLLT 177 (357)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~ 177 (357)
++. + ..+..++++++.....++...+++...+.-|+ +..
T Consensus 197 ----~~~--------~---------------------------~~~~~~~l~~p~v~~~l~~t~l~~~g~F~~ft--Yi~ 235 (394)
T COG2814 197 ----LPG--------P---------------------------LRTLLRLLRRPGVLLGLLATFLFMTGHFALYT--YIR 235 (394)
T ss_pred ----CCc--------c---------------------------hhHHHHHhcCchHHHHHHHHHHHHcchhhhHH--hHH
Confidence 000 0 00112234444444444444444433332222 223
Q ss_pred hhhcCCCCCCCcccccCCCCCchhhHHHHHHHHhhhhhHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHh-hhhhHHH
Q 018373 178 SKLSSGDNKCGSKVLHADKSKDNSLYVDVFIASLAELPGLILSAIIVDKIGRKLSMVLMFVSACIFLLPLVF-HQSAVVT 256 (357)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~d~~GRR~~~~~~~~~~~i~~~~~~~-~~~~~~~ 256 (357)
|.+.+..+ .+. ...-...+..+++.++|++++|++.|| +.|+.+..........+..+.+ .++....
T Consensus 236 P~L~~v~g---------~s~--~~vs~~Ll~~Gv~~~~Gn~~gGrl~dr-~~~~~l~~~~~l~a~~~l~l~~~~~~~~~~ 303 (394)
T COG2814 236 PFLESVAG---------FSV--SAVSLVLLAFGIAGFIGNLLGGRLADR-GPRRALIAALLLLALALLALTFTGASPALA 303 (394)
T ss_pred HHHHHccC---------CCH--hHHHHHHHHHHHHHHHHHHHHhhhccc-cchhHHHHHHHHHHHHHHHHHHhcchHHHH
Confidence 44432211 112 222334466788999999999999999 8888877665555444444333 3333332
Q ss_pred HHHHHHHHHHhhhhhhhhhhhccccccCcchhhHHHHHHHHHHHHHhHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHH
Q 018373 257 TVLLFGVRMCVTGTITVATIYAPEIYPTSARTTGFGVASSLGKVGGMVCPLVAVGLVTSCHLRLAVILFEVVFVLAIASS 336 (357)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~~~~~~ElfPt~~R~~~~~~~~~~~~l~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 336 (357)
....+...+..........+-.++ .-.+.+..+.++..+..+++...+..+...+.++.+.....++-+...+++.++.
T Consensus 304 ~~~~~~wg~a~~~~~~~~~~~~a~-~~p~~~~~a~sl~~aa~nlgia~GA~lGG~v~~~~g~~~~~~~~a~l~~~a~~~~ 382 (394)
T COG2814 304 LALLFLWGFAFSPALQGLQTRLAR-LAPDAADLAGSLNVAAFNLGIALGAALGGLVLDALGYAATGWVGAALLLLALLLA 382 (394)
T ss_pred HHHHHHHHHHhhhhhhHHHHHhcc-cCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHH
Confidence 222222222222222334455666 5567899999999999999888888888887887655545555556656665555
Q ss_pred hhc
Q 018373 337 LLF 339 (357)
Q Consensus 337 ~~~ 339 (357)
...
T Consensus 383 ~~~ 385 (394)
T COG2814 383 LLS 385 (394)
T ss_pred HHH
Confidence 443
No 55
>PRK10473 multidrug efflux system protein MdtL; Provisional
Probab=99.52 E-value=1.5e-11 Score=115.64 Aligned_cols=106 Identities=13% Similarity=0.021 Sum_probs=55.4
Q ss_pred HHHHhhhhhHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhhhhccccccCcc
Q 018373 207 FIASLAELPGLILSAIIVDKIGRKLSMVLMFVSACIFLLPLVFHQSAVVTTVLLFGVRMCVTGTITVATIYAPEIYPTSA 286 (357)
Q Consensus 207 ~i~~~~~~~~~~~~~~l~d~~GRR~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ElfPt~~ 286 (357)
....++.+++.++.+++.||+|||+.+..+..+..+....+...................... ........++.|.+.
T Consensus 246 ~~~~~~~i~~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~--~~~~~~~~~~~~~~~ 323 (392)
T PRK10473 246 ALTAGVSMTVSFSTPFALGIFKPRTLMLTSQVLFLAAGITLALSPSHAVSLFGITLICAGFSV--GFGVAMSQALGPFSL 323 (392)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HhHHHHHHHhccCcc
Confidence 345667788899999999999999998877665554444333322222111111111111111 122234456677665
Q ss_pred hhhHHHHHHHHHHHHHhHHHHHHHHHHhhcc
Q 018373 287 RTTGFGVASSLGKVGGMVCPLVAVGLVTSCH 317 (357)
Q Consensus 287 R~~~~~~~~~~~~l~~~~~p~~~~~l~~~~~ 317 (357)
|+ |.+++...++..+++.+.+.+.+..+
T Consensus 324 ~~---g~~~~~~~~~~~~g~~~~~~l~~~~g 351 (392)
T PRK10473 324 RA---GVASSTLGIAQVCGSSLWIWLAAVLG 351 (392)
T ss_pred cc---cHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 64 33333334444455555554444443
No 56
>PRK10504 putative transporter; Provisional
Probab=99.51 E-value=2.3e-11 Score=117.19 Aligned_cols=109 Identities=12% Similarity=0.089 Sum_probs=70.8
Q ss_pred HHHhhhhhHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHh-h-hhhHH-HHHHHHHHHHHhhhhhhhhhhhccccccC
Q 018373 208 IASLAELPGLILSAIIVDKIGRKLSMVLMFVSACIFLLPLVF-H-QSAVV-TTVLLFGVRMCVTGTITVATIYAPEIYPT 284 (357)
Q Consensus 208 i~~~~~~~~~~~~~~l~d~~GRR~~~~~~~~~~~i~~~~~~~-~-~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ElfPt 284 (357)
...+..+++.++.+.+.||+|||+.+..+..+..+....+.. . ..... .....+...+.....++.......+.+|.
T Consensus 305 ~~~~~~~~~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 384 (471)
T PRK10504 305 PMVLGSMGMKRIVVQVVNRFGYRRVLVATTLGLALVSLLFMLVALLGWYYLLPFVLFLQGMVNSTRFSSMNTLTLKDLPD 384 (471)
T ss_pred HHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCH
Confidence 344555666688899999999999988777655554333332 1 11111 11111111122222345566778889999
Q ss_pred cchhhHHHHHHHHHHHHHhHHHHHHHHHHhhc
Q 018373 285 SARTTGFGVASSLGKVGGMVCPLVAVGLVTSC 316 (357)
Q Consensus 285 ~~R~~~~~~~~~~~~l~~~~~p~~~~~l~~~~ 316 (357)
+.|+++.|+.+....++..+++.+...+.+..
T Consensus 385 ~~~g~~~~~~~~~~~~g~~ig~~i~g~ll~~~ 416 (471)
T PRK10504 385 NLASSGNSLLSMIMQLSMSIGVTIAGLLLGLF 416 (471)
T ss_pred HhccchHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999988898888888877665543
No 57
>PRK11043 putative transporter; Provisional
Probab=99.49 E-value=3.4e-11 Score=113.50 Aligned_cols=106 Identities=13% Similarity=0.121 Sum_probs=63.1
Q ss_pred HHhhhhhHHHHHHHHHHhhchhHHHHHHHHHHHHHHHH---HHh-h-hhhHHHHHHHHHHHHHhhhhhhhhhhhcccccc
Q 018373 209 ASLAELPGLILSAIIVDKIGRKLSMVLMFVSACIFLLP---LVF-H-QSAVVTTVLLFGVRMCVTGTITVATIYAPEIYP 283 (357)
Q Consensus 209 ~~~~~~~~~~~~~~l~d~~GRR~~~~~~~~~~~i~~~~---~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ElfP 283 (357)
..++.++|.++.+++.||+|||+..........+.... ... . ..............+.....++.......|.+|
T Consensus 247 ~~~~~~~g~~~~~~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 (401)
T PRK11043 247 QTIAFLVGGYGCRAALQKWGGEQLLPWLLVLFAVSVIAIWLASLLSHPSLVPLLIPFCVMAAANGAIYPIVVAQALRPFP 326 (401)
T ss_pred HHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCc
Confidence 34566788888899999999998765444333322221 111 1 111111111111122222334455556667777
Q ss_pred CcchhhHHHHHHHHHHHHHhHHHHHHHHHHhh
Q 018373 284 TSARTTGFGVASSLGKVGGMVCPLVAVGLVTS 315 (357)
Q Consensus 284 t~~R~~~~~~~~~~~~l~~~~~p~~~~~l~~~ 315 (357)
. .|+++.|+.+.++..++..++.+...+.+.
T Consensus 327 ~-~~g~~~g~~~~~~~~~~~~~~~~~g~l~~~ 357 (401)
T PRK11043 327 Q-ATGKAAALQNTLQLGLCFLASLLVSALIST 357 (401)
T ss_pred c-cChHHHHHHHHHHHHHHHHHHHHHHHccCC
Confidence 5 799999999999888888888887766553
No 58
>TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily. This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli.
Probab=99.48 E-value=1.3e-11 Score=119.04 Aligned_cols=108 Identities=13% Similarity=0.116 Sum_probs=71.0
Q ss_pred HHHHhhhhhHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHh--h-hhh-HHHHHHHHHHHHHhhhhhhhhhhhccccc
Q 018373 207 FIASLAELPGLILSAIIVDKIGRKLSMVLMFVSACIFLLPLVF--H-QSA-VVTTVLLFGVRMCVTGTITVATIYAPEIY 282 (357)
Q Consensus 207 ~i~~~~~~~~~~~~~~l~d~~GRR~~~~~~~~~~~i~~~~~~~--~-~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~Elf 282 (357)
....++.+++.++++++.||+|||+.+..+..+..+....+.. . ... ...........+.....++.......|.+
T Consensus 298 ~~~~~~~~~~~~~~g~l~~r~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~ 377 (485)
T TIGR00711 298 LPVGLAPMLSSPIAGRMGDKIDPRKLVTIGLILYAVGFYWRAFTFTPDTPFLAIALPQFIRGFGMGCFFMPLTTIALSGL 377 (485)
T ss_pred HHHHHHHHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 4456778889999999999999999988776655554443331 1 111 11111111122222222333445566788
Q ss_pred cCcchhhHHHHHHHHHHHHHhHHHHHHHHHHh
Q 018373 283 PTSARTTGFGVASSLGKVGGMVCPLVAVGLVT 314 (357)
Q Consensus 283 Pt~~R~~~~~~~~~~~~l~~~~~p~~~~~l~~ 314 (357)
|.+.|+++.|+.+....+++.+++.+...+.+
T Consensus 378 ~~~~~g~~~~~~~~~~~~g~~ig~~i~g~~~~ 409 (485)
T TIGR00711 378 PPHKIARGSSLSNFTRQLGGSIGTALITTILT 409 (485)
T ss_pred CHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999998888887776655
No 59
>PRK10091 MFS transport protein AraJ; Provisional
Probab=99.48 E-value=3e-11 Score=113.18 Aligned_cols=130 Identities=12% Similarity=0.061 Sum_probs=72.6
Q ss_pred HHHHhhhhhHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHh-hhhhHHHHHHHHHHHHHhhhhh-hhhhhhccccccC
Q 018373 207 FIASLAELPGLILSAIIVDKIGRKLSMVLMFVSACIFLLPLVF-HQSAVVTTVLLFGVRMCVTGTI-TVATIYAPEIYPT 284 (357)
Q Consensus 207 ~i~~~~~~~~~~~~~~l~d~~GRR~~~~~~~~~~~i~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ElfPt 284 (357)
.+..++.+++.++.+++.||+|||+.+..+..+..+..+.+.. .+.........+...+...+.. +.......+.+|.
T Consensus 242 ~~~~~~~~ig~~~~g~l~~r~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 321 (382)
T PRK10091 242 MLVGLGMVLGNLLSGRLSGRYSPLRIAAVTDFIIVLALLMLFFFGGMKTASLIFAFICCAGLFALSAPLQILLLQNAKGG 321 (382)
T ss_pred HHHHHHHHHHhHHHheeccccCchhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhhHHHHHHHHHhCCcc
Confidence 4456778899999999999999999888776655544333322 2222221111111111111111 1223345566666
Q ss_pred cchhhHHHHHHHHHHHHHhHHHHHHHHHHhhc-chhhHHHHHHHHHHHHHHHHhh
Q 018373 285 SARTTGFGVASSLGKVGGMVCPLVAVGLVTSC-HLRLAVILFEVVFVLAIASSLL 338 (357)
Q Consensus 285 ~~R~~~~~~~~~~~~l~~~~~p~~~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~ 338 (357)
+.++.+ .++....+++.++|.+...+.+.. +....+.+.++.+.+...+..+
T Consensus 322 ~~~~~~--~~~~~~~~g~~~Gp~~~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 374 (382)
T PRK10091 322 ELLGAA--GGQIAFNLGSAIGAYCGGMMLTLGLAYNYVALPAALLSFAAMSSLLL 374 (382)
T ss_pred hHHHHH--HHHHHHHHHHHHHHHHhHHHHHcccCcchHHHHHHHHHHHHHHHHHH
Confidence 665554 446667789999999988877753 3334444444444444333333
No 60
>PRK11102 bicyclomycin/multidrug efflux system; Provisional
Probab=99.48 E-value=3e-11 Score=112.71 Aligned_cols=101 Identities=17% Similarity=0.148 Sum_probs=56.4
Q ss_pred HHHHhhhhhHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHH---hhhhhHHHHHHHH-HHHHHhhhhhhhhhhhccccc
Q 018373 207 FIASLAELPGLILSAIIVDKIGRKLSMVLMFVSACIFLLPLV---FHQSAVVTTVLLF-GVRMCVTGTITVATIYAPEIY 282 (357)
Q Consensus 207 ~i~~~~~~~~~~~~~~l~d~~GRR~~~~~~~~~~~i~~~~~~---~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~Elf 282 (357)
.+..+..+++.++.+++.||+|||+.+..+.....+....+. ..........+.. ...............+..|..
T Consensus 237 ~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 316 (377)
T PRK11102 237 ALNIVFLFVMTIINSRFVRRVGALNMLRFGLWIQFIMGIWLVVSALLDLGFWALVVGVAAFVGCVSMISSNAMAVILDEF 316 (377)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhHHHHHHHhccc
Confidence 345667788899999999999999988776654333222111 1111111111111 111111111223344567888
Q ss_pred cCcchhhHHHHHHHHHH-HHHhHHHHH
Q 018373 283 PTSARTTGFGVASSLGK-VGGMVCPLV 308 (357)
Q Consensus 283 Pt~~R~~~~~~~~~~~~-l~~~~~p~~ 308 (357)
| +.|++++++.+.... +++.+++.+
T Consensus 317 ~-~~~g~~~~~~~~~~~~~g~~~g~~~ 342 (377)
T PRK11102 317 P-HMAGTASSLAGTLRFGIGAIVGALL 342 (377)
T ss_pred c-ccchHHHHHHHHHHHHHHHHHHHHH
Confidence 8 789999999877654 445555544
No 61
>PRK11195 lysophospholipid transporter LplT; Provisional
Probab=99.48 E-value=2.8e-11 Score=113.82 Aligned_cols=131 Identities=10% Similarity=0.008 Sum_probs=71.3
Q ss_pred HHHHhhhhhHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhhhhccccccCcc
Q 018373 207 FIASLAELPGLILSAIIVDKIGRKLSMVLMFVSACIFLLPLVFHQSAVVTTVLLFGVRMCVTGTITVATIYAPEIYPTSA 286 (357)
Q Consensus 207 ~i~~~~~~~~~~~~~~l~d~~GRR~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ElfPt~~ 286 (357)
....++.+++.++.+++.||.++|+....+... ++....+...++........+...+......+.......|.-|.+.
T Consensus 248 ~~~~~g~i~g~~~~~~l~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~~~~~~~~~~~G~~~g~~~~~~~~~~q~~~~~~~ 326 (393)
T PRK11195 248 AVVAIGIAVGAGAAARLVTLETVLRVLPAGILM-GLVVLLMALQHSLLPAYPLLILIGALGGFFVVPMNALLQHRGHVLV 326 (393)
T ss_pred HHHHHHHHHHHHHHHHHhcCCcccchHHHHHHH-HHHHHHHHHHhHHHHHHHHHHHHHHhhhhhhhhHHHHHHhhCcccc
Confidence 445667788889999999999988877665433 2222222222222211122212222111112233444567766665
Q ss_pred -hhhHHHHHHHHHHHHHhHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHHhhc
Q 018373 287 -RTTGFGVASSLGKVGGMVCPLVAVGLVTSCHLRLAVILFEVVFVLAIASSLLF 339 (357)
Q Consensus 287 -R~~~~~~~~~~~~l~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 339 (357)
|+++.++.+....++..++..+...+ ...+....+.+.+...+++..+.+.+
T Consensus 327 ~~g~~~a~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 379 (393)
T PRK11195 327 GAGHSIAVQNFNENLAMLLMLGLYSLL-VKLGVPVVAVIVGFGLLVALAMALLW 379 (393)
T ss_pred cchhHHHHHhHHHHHHHHHHHHHHHHH-HHcCCCHHHHHHHHHHHHHHHHHHHH
Confidence 79999999988888887777666644 34444333444333334444444433
No 62
>PRK10213 nepI ribonucleoside transporter; Reviewed
Probab=99.48 E-value=5.3e-11 Score=112.00 Aligned_cols=56 Identities=13% Similarity=0.203 Sum_probs=40.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHhhHHHHHHHH-HHhcCCCCh
Q 018373 19 GRWMVALSAFWTAGTIFEASLAWVVMTRLNWRWLLAFSSVPSFALLL-FYGLAPESP 74 (357)
Q Consensus 19 g~~~~~~~~~~~~G~l~~~~i~~~~~~~~~WR~~~~~~~~p~l~~~~-~~~~lpESP 74 (357)
++..+....+.++|.+++..++..+.+..+||+.|.+..+..+++.+ ....+||+|
T Consensus 143 ~~a~~~~~~~~~~g~~ig~~l~~~l~~~~gw~~~f~~~~~l~~~~~l~~~~~~p~~~ 199 (394)
T PRK10213 143 PKALSVIFGAVSIALVIAAPLGSFLGELIGWRNVFNAAAVMGVLCIFWIIKSLPSLP 199 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHCCCCC
Confidence 66677777778888888877776666678999999888766555433 344578765
No 63
>PRK15402 multidrug efflux system translocase MdfA; Provisional
Probab=99.47 E-value=6.9e-11 Score=111.60 Aligned_cols=107 Identities=10% Similarity=-0.155 Sum_probs=61.1
Q ss_pred HhhhhhHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHh-h---hhhHHH-HHHHHHHHHHhhhhhhhhhhhccccccC
Q 018373 210 SLAELPGLILSAIIVDKIGRKLSMVLMFVSACIFLLPLVF-H---QSAVVT-TVLLFGVRMCVTGTITVATIYAPEIYPT 284 (357)
Q Consensus 210 ~~~~~~~~~~~~~l~d~~GRR~~~~~~~~~~~i~~~~~~~-~---~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ElfPt 284 (357)
..+.+++.++.+++.||+|||+.+..+.....+....+.. . ...... ........+......+......... +.
T Consensus 261 ~~~~~~g~~~~g~l~~r~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~g~~~~~~~~~~~~~~~-~~ 339 (406)
T PRK15402 261 FGALIAGNLTLARLTSRRPLRSLIRMGLWPMVAGLLLAALATVISSHAYLWLTAGLSLYAFGIGLANAGLYRLTLFS-SD 339 (406)
T ss_pred HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHhhhHHHHHhhh-cc
Confidence 4456788889999999999999887766544333322221 1 111111 1111111111111122222222222 33
Q ss_pred cchhhHHHHHHHHHHHHHhHHHHHHHHHHhhcc
Q 018373 285 SARTTGFGVASSLGKVGGMVCPLVAVGLVTSCH 317 (357)
Q Consensus 285 ~~R~~~~~~~~~~~~l~~~~~p~~~~~l~~~~~ 317 (357)
+.|++..++.+....++..+++.+...+.+..+
T Consensus 340 ~~~g~~~~~~~~~~~~~~~~g~~~~~~l~~~~~ 372 (406)
T PRK15402 340 VSKGTVSAAMGMLSMLIFTVGIELSKHAYLGGG 372 (406)
T ss_pred ccccHHHHHHHHHHHHHHHHHHHHHHhcccCCc
Confidence 889999999999888888888888776655444
No 64
>TIGR00882 2A0105 oligosaccharide:H+ symporter.
Probab=99.47 E-value=1.5e-11 Score=115.74 Aligned_cols=131 Identities=12% Similarity=0.140 Sum_probs=84.9
Q ss_pred HHHhhhhhHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhhhhccccccCcch
Q 018373 208 IASLAELPGLILSAIIVDKIGRKLSMVLMFVSACIFLLPLVFHQSAVVTTVLLFGVRMCVTGTITVATIYAPEIYPTSAR 287 (357)
Q Consensus 208 i~~~~~~~~~~~~~~l~d~~GRR~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ElfPt~~R 287 (357)
+..+...++.+..+++.||+|||+.+..+..+.++.........+........+...............+..|.+|.+.|
T Consensus 262 ~~~i~~~~~~~~~g~l~~r~g~~~~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~ 341 (396)
T TIGR00882 262 MGELLNALIMFCAPLIINRIGAKNALLIAGTIMSVRIIGSSFATTALEVVILKMLHAFEVPFLLVGCFKYITSQFDVRLS 341 (396)
T ss_pred HHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcceE
Confidence 34566677788899999999999998877665555443333332332222212111111111122445577899999999
Q ss_pred hhHHHHH-HHHHHHHHhHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHHhh
Q 018373 288 TTGFGVA-SSLGKVGGMVCPLVAVGLVTSCHLRLAVILFEVVFVLAIASSLL 338 (357)
Q Consensus 288 ~~~~~~~-~~~~~l~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 338 (357)
+++.+.. +....++++++|.+...+.+..+...++.+.+++.++..++..+
T Consensus 342 at~~~~~~~~~~~lg~~~~~~l~G~l~~~~G~~~~f~~~~~~~~i~~~~~~~ 393 (396)
T TIGR00882 342 ATIYLIGFQFAKQLAMIFLSTLAGNMYDSIGFQGAYLVLGCIVLLFTLISVF 393 (396)
T ss_pred EEeehHHHHHHHHHHHHHHHHhHHHHHHhcccHHHHHHHHHHHHHHHHHHHH
Confidence 9988874 55668899999999998888766666677777666666555443
No 65
>PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms. These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A.
Probab=99.46 E-value=1.9e-12 Score=119.21 Aligned_cols=100 Identities=23% Similarity=0.398 Sum_probs=68.0
Q ss_pred HHHHhhhhhHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHh---hhhhHHHHHHHHHHHHHhhhhhhhhhhhcccccc
Q 018373 207 FIASLAELPGLILSAIIVDKIGRKLSMVLMFVSACIFLLPLVF---HQSAVVTTVLLFGVRMCVTGTITVATIYAPEIYP 283 (357)
Q Consensus 207 ~i~~~~~~~~~~~~~~l~d~~GRR~~~~~~~~~~~i~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ElfP 283 (357)
.+..+...++.++.+++.||+|+|+..........+....+.. ..+..+.....+...+......+....+..|.+|
T Consensus 250 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 329 (352)
T PF07690_consen 250 SIFGIVGIIGSLLAGRLSDRFGRRRRLLIAILLLILGALGLLLLPFSSSPVWLIIALFLIGFGFGIVFPILFSLIQELVP 329 (352)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCSHHHCHHHHHHHHHHHHHHHHHHHCHHHHHHHHCCCH
T ss_pred HHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 4456667777889999999999877776655554444433332 1122222222222233333345678899999999
Q ss_pred CcchhhHHHHHHHHHHHHHhHHH
Q 018373 284 TSARTTGFGVASSLGKVGGMVCP 306 (357)
Q Consensus 284 t~~R~~~~~~~~~~~~l~~~~~p 306 (357)
++.|+++.|+.+.+..+++.++|
T Consensus 330 ~~~~g~~~g~~~~~~~~~~~igP 352 (352)
T PF07690_consen 330 PEYRGTAFGLFNSIGSLGGIIGP 352 (352)
T ss_dssp TCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHCC
Confidence 99999999999999999988876
No 66
>TIGR00902 2A0127 phenyl proprionate permease family protein. This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules.
Probab=99.45 E-value=8.9e-11 Score=110.01 Aligned_cols=125 Identities=10% Similarity=-0.043 Sum_probs=81.4
Q ss_pred HHHHhhhhhHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhhhhccccccCcc
Q 018373 207 FIASLAELPGLILSAIIVDKIGRKLSMVLMFVSACIFLLPLVFHQSAVVTTVLLFGVRMCVTGTITVATIYAPEIYPTSA 286 (357)
Q Consensus 207 ~i~~~~~~~~~~~~~~l~d~~GRR~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ElfPt~~ 286 (357)
.+..+.++++..+.+.+.||+|+|+++.++.+.+.+....+...++.......-..-.+......+....++++. |.+.
T Consensus 247 ~~~~~~~i~~~~~~~~l~~r~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~q~l~g~~~~~~~~~~~~~i~~~-~~~~ 325 (382)
T TIGR00902 247 GIGVLAEIIIFAFSNKLFQNCSARDLLLISAIACVGRWAIIGAIEAFPLIFLLQILHCGTFAVCHLAAMRYIAAQ-PGSE 325 (382)
T ss_pred HHHHHHHHHHHHHhHHHHhhCCHHHHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CHhh
Confidence 345677788888999999999999999888877776655444433322211111111112122334455567777 9999
Q ss_pred hhhHHHHHHHHH-HHHHhHHHHHHHHHHhhcchhhHHHHHHHHHHHHH
Q 018373 287 RTTGFGVASSLG-KVGGMVCPLVAVGLVTSCHLRLAVILFEVVFVLAI 333 (357)
Q Consensus 287 R~~~~~~~~~~~-~l~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~ 333 (357)
|++++++-+... .++..++|.+.+.+.+..+. ..|++.+++.+++.
T Consensus 326 ~~~~q~~~~~~~~g~g~~~g~~~~G~l~~~~g~-~~~~~~~~~~~~~~ 372 (382)
T TIGR00902 326 IAKLQALYNALAMGGLIAIFTAFAGFIYPTLGA-GTFVFMAIIAAAAF 372 (382)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccH-HHHHHHHHHHHHHH
Confidence 999999976554 47788889998888887653 44555556555443
No 67
>TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family. RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes.
Probab=99.42 E-value=1.6e-10 Score=108.57 Aligned_cols=122 Identities=16% Similarity=-0.025 Sum_probs=73.0
Q ss_pred hhhhhHHHHHHHHHHhhchhHHHHHHHHHHHHHHH-HHHhhh-----hhHHHHHHHHHHHHHhhhhhhhhhhhccccccC
Q 018373 211 LAELPGLILSAIIVDKIGRKLSMVLMFVSACIFLL-PLVFHQ-----SAVVTTVLLFGVRMCVTGTITVATIYAPEIYPT 284 (357)
Q Consensus 211 ~~~~~~~~~~~~l~d~~GRR~~~~~~~~~~~i~~~-~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~ElfPt 284 (357)
...+++.++.+++.||+|+|+.+..+.....+... ...... .............+......+..+....+..+.
T Consensus 255 ~~~~~g~~~~g~l~~r~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 334 (390)
T TIGR02718 255 VTVLLGCGGGAWLVRRAGLWRTFILGVGLAGSLALLWFAQAAFWLAPGIAVAWSCSAFGSLITGITSVAIYTAFMRFAGD 334 (390)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHcccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCc
Confidence 34566788999999999999998776554422211 111110 111111111111111122234445555556665
Q ss_pred -cchhhHHHHHHHHHHHHHhHHHHHHHHHHhhcchhhHHHHHHHHHHHH
Q 018373 285 -SARTTGFGVASSLGKVGGMVCPLVAVGLVTSCHLRLAVILFEVVFVLA 332 (357)
Q Consensus 285 -~~R~~~~~~~~~~~~l~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~ 332 (357)
+.|++..++.+....++..++|.+...+.+..+....+.+.+++.+++
T Consensus 335 ~~~~g~~~~~~~~~~~lg~~~g~~~~G~l~~~~G~~~~f~~~~~~~l~a 383 (390)
T TIGR02718 335 GDQAGTDVTAVQSTRDLGELIASSIAGYLTDRFGYAGGFLSGTVLAVLA 383 (390)
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHH
Confidence 899999999999999999999999988887665444455444444444
No 68
>PRK15034 nitrate/nitrite transport protein NarU; Provisional
Probab=99.39 E-value=1.3e-10 Score=110.07 Aligned_cols=134 Identities=16% Similarity=0.184 Sum_probs=88.9
Q ss_pred HHHHhhhhhHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHH--hhhh--hHH-HHHHHHHHH-HHhhhhhhhhhhhccc
Q 018373 207 FIASLAELPGLILSAIIVDKIGRKLSMVLMFVSACIFLLPLV--FHQS--AVV-TTVLLFGVR-MCVTGTITVATIYAPE 280 (357)
Q Consensus 207 ~i~~~~~~~~~~~~~~l~d~~GRR~~~~~~~~~~~i~~~~~~--~~~~--~~~-~~~~~~~~~-~~~~~~~~~~~~~~~E 280 (357)
.+..+...++.+++|+++||+|||+.+.++.....+...+.. .+.. ... .....+... ++.....+..+-+++.
T Consensus 293 ~l~~l~~~l~rplgG~LADRiG~~~vl~~~~i~~~i~~~~~~l~lp~~~~~~~~~~~~~~~~l~~~~G~gngsvfk~ip~ 372 (462)
T PRK15034 293 FFGPFIGAIARSVGGAISDKFGGVRVTLINFIFMAIFSALLFLTLPGTGSGNFIAFYAVFMGLFLTAGLGSGSTFQMIAV 372 (462)
T ss_pred HHHHHHHHHHHHhhHHHHHhcCchHHHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcccchHHHHhhHH
Confidence 344566777888999999999999999887776655543322 2211 111 111112221 2222234577888999
Q ss_pred cccC---------------------cchhhHHHHHHHHHHHHHhHHHHHHHHHHhhcc-hhhHHHHHHHHHHHHHHHHhh
Q 018373 281 IYPT---------------------SARTTGFGVASSLGKVGGMVCPLVAVGLVTSCH-LRLAVILFEVVFVLAIASSLL 338 (357)
Q Consensus 281 lfPt---------------------~~R~~~~~~~~~~~~l~~~~~p~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~ 338 (357)
.||. +.-+...|++.+.+.+|+++.|.++....+..+ ....++.+.+..+++.++++.
T Consensus 373 ~f~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~G~v~a~G~~Ggf~~p~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~w~ 452 (462)
T PRK15034 373 IFRQITIYRVKMKGGSDEQAQREAVTETAAALGFISAIGAVGGFFIPQAFGMSLNMTGSPVGAMKVFLIFYIVCVLLTWL 452 (462)
T ss_pred HHhhhhhhcccccccchhHHhhHHHHHHHHHHHHHHHHHHcccchhhHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHH
Confidence 9995 134677888899999999999988887766544 345577788888888888776
Q ss_pred cc
Q 018373 339 FP 340 (357)
Q Consensus 339 ~~ 340 (357)
+.
T Consensus 453 ~y 454 (462)
T PRK15034 453 VY 454 (462)
T ss_pred Hh
Confidence 54
No 69
>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional
Probab=99.39 E-value=3.6e-11 Score=127.91 Aligned_cols=233 Identities=12% Similarity=-0.049 Sum_probs=122.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHhhHHHHHHHHHHhcCCCChHHHHHcCChHHHHHHHHHHHHHcC
Q 018373 19 GRWMVALSAFWTAGTIFEASLAWVVMTRLNWRWLLAFSSVPSFALLLFYGLAPESPRYLCAKARTVDAHRILEKMAFVNQ 98 (357)
Q Consensus 19 g~~~~~~~~~~~~G~l~~~~i~~~~~~~~~WR~~~~~~~~p~l~~~~~~~~lpESP~wL~~~g~~~~a~~~l~~l~~~~~ 98 (357)
++..++.+.+.++|.+++..++..+....+||..|....+..++.++..+++||+|. .+.+.+
T Consensus 143 ~~a~~~~~~~~~ig~~igp~l~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~-------------- 205 (1140)
T PRK06814 143 LGANALVEAGTFIAILLGTIIGGLATISGNFVILVALLMGIAVLGWLASLFIPKTGN---AAPDLK-------------- 205 (1140)
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHhhCCCCCC---CCCCCe--------------
Confidence 777788888888888888777766666779999996666666666667777887652 000000
Q ss_pred CCCCCCcccchhhhhhhhhhhhhhcchhhhhhhhhhhhhccchhhhhhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 018373 99 TKLPPGILVSDKAIKENEESNLLRDTHMLSMTRKITDKLKSGFSSFFMLFSRKLIRTTLLLWVLFFANVFSYYGAVLLTS 178 (357)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~ 178 (357)
+ +.. ..++ ....++.+++++..+...+.... ..+.+++...+.|
T Consensus 206 ---~-~~~------~~~~-----------------------~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~p 249 (1140)
T PRK06814 206 ---I-DRN------IIRS-----------------------TITLLKYAKADKRIWLAILGISW---FWLVGAVVLSQLP 249 (1140)
T ss_pred ---e-ccc------hHHH-----------------------HHHHHHHHhcCchHHHHHHHHHH---HHHHHHHHHHHhH
Confidence 0 000 0000 00122333333332222222111 1111122222233
Q ss_pred hhcCCCCCCCcccccCCCCCchhhHHHHHHHHhhhhhHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHhh--------
Q 018373 179 KLSSGDNKCGSKVLHADKSKDNSLYVDVFIASLAELPGLILSAIIVDKIGRKLSMVLMFVSACIFLLPLVFH-------- 250 (357)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~d~~GRR~~~~~~~~~~~i~~~~~~~~-------- 250 (357)
.+..+. .+ ....... .......++.++|.++.+++.++.++++.+..+.++.++..+.+...
T Consensus 250 ~~~~~~-------~g-~~~~~~g--~~~~~~~~g~~ig~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 319 (1140)
T PRK06814 250 LLAKET-------LG-GDENVAT--LFLAVFSVGVAVGSFLASKLSEGRITLLYVPIGALLMGLFGLDLAFASSSVPAEP 319 (1140)
T ss_pred HHHHHH-------cC-CchHHHH--HHHHHHHHHHHHHHHHHHHHhCCceeeeeehHHHHHHHHHHHHHHhccccccccc
Confidence 221100 00 0111111 12234567778889999999988776665544443333322211110
Q ss_pred ------------hhhHHHHHHHHHHHHHhhhhhhhhhhhccccccCcchhhHHHHHHHHHHHHHhHHHHHHHHHHh
Q 018373 251 ------------QSAVVTTVLLFGVRMCVTGTITVATIYAPEIYPTSARTTGFGVASSLGKVGGMVCPLVAVGLVT 314 (357)
Q Consensus 251 ------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ElfPt~~R~~~~~~~~~~~~l~~~~~p~~~~~l~~ 314 (357)
.+.+...+..+...++.........++..|..|.+.|+++.|+.+.++.++..+++.+...+..
T Consensus 320 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~G~v~g~~~~~~~~~~~ig~~~~g~l~~ 395 (1140)
T PRK06814 320 AQLKSILVFLSKRHGWRILIDLFGLAAAGGLYIVPLFAALQAWANPAHRARVIAANNVLNAAFMVAGTIILALLQA 395 (1140)
T ss_pred ccccchhhhhcccccHHHHHHHHHHHHHHHHhHHHHHHHHHhhCCcccceeeeHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1111111112222222222334567889999999999999999999999988888888776653
No 70
>TIGR00892 2A0113 monocarboxylate transporter 1.
Probab=99.39 E-value=3.2e-11 Score=115.62 Aligned_cols=128 Identities=9% Similarity=0.027 Sum_probs=74.3
Q ss_pred HHHHhhhhhHHHHHHHHHHh--hchhHHHHHH--HHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhhhhccccc
Q 018373 207 FIASLAELPGLILSAIIVDK--IGRKLSMVLM--FVSACIFLLPLVFHQSAVVTTVLLFGVRMCVTGTITVATIYAPEIY 282 (357)
Q Consensus 207 ~i~~~~~~~~~~~~~~l~d~--~GRR~~~~~~--~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Elf 282 (357)
.+.+++.+++.++.+++.|| +++|+..... ....++..+......+.....+..+...+......+..+.+..|.+
T Consensus 283 ~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~i~~~~~G~~~g~~~~~~~~~~~~~~ 362 (455)
T TIGR00892 283 SIIGFVDIFARPSCGLIAGLKWIRPHVQYLFSFALLFNGLTHLLCALAGDYTGLVIYCIFFGLSFGSVGALLFEVLMDLV 362 (455)
T ss_pred HHHHHHHHHHHHHHHHHhcccccCHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhchHHHHHHHHHHHHh
Confidence 34566677788888999997 3344333222 2222222222122222222112122222222233456678889999
Q ss_pred cCcchhhHHHHHHHHHHHHHhHHHHHHHHHHhhcc-hhhHHHHHHHHHHHHHH
Q 018373 283 PTSARTTGFGVASSLGKVGGMVCPLVAVGLVTSCH-LRLAVILFEVVFVLAIA 334 (357)
Q Consensus 283 Pt~~R~~~~~~~~~~~~l~~~~~p~~~~~l~~~~~-~~~~~~~~~~~~~~~~~ 334 (357)
|.+.|+++.|+.+....++++++|.+...+.+..+ ....+++.+++.+++.+
T Consensus 363 ~~~~~g~~~g~~~~~~~lg~~igp~i~G~l~~~~g~~~~~f~~~~~~~li~~~ 415 (455)
T TIGR00892 363 GAQRFSSAVGLVTIVECCAVLIGPPLAGRLVDATKNYKYIFYASGSIVVSAGL 415 (455)
T ss_pred hHHHHhhHHhHHHHHHHHHHHccccceeeeehhcCCcchHHHHhhHHHHHHHH
Confidence 99999999999999999999999998887766543 33444444444444433
No 71
>PRK03633 putative MFS family transporter protein; Provisional
Probab=99.39 E-value=3.3e-10 Score=106.11 Aligned_cols=123 Identities=17% Similarity=0.135 Sum_probs=79.0
Q ss_pred HHHhhhhhHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhhhhccccccCcch
Q 018373 208 IASLAELPGLILSAIIVDKIGRKLSMVLMFVSACIFLLPLVFHQSAVVTTVLLFGVRMCVTGTITVATIYAPEIYPTSAR 287 (357)
Q Consensus 208 i~~~~~~~~~~~~~~l~d~~GRR~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ElfPt~~R 287 (357)
+..+..+++.+..+++.||+|||+.+..+.....+....+. ...... .. .....+.....++.......|..|.+.+
T Consensus 243 ~~~~~~~~~~~~~g~l~dr~~~~~~l~~~~~~~~~~~~~~~-~~~~~~-~~-~~l~g~~~~~~~p~~~~~~~~~~~~~~~ 319 (381)
T PRK03633 243 LLVSAGILGQWPIGRLADRFGRLLVLRVQVFVVILGSIAML-SQAAMA-PA-LFILGAAGFTLYPVAMAWACEKVEHHEL 319 (381)
T ss_pred HHHHHHHHHHhhhHHHHHHcCcHHHHHHHHHHHHHHHHHHh-hhHHHH-HH-HHHHHHHHHhHHHHHHHHHHccCCHHHH
Confidence 44567788899999999999999988766555444333222 111111 11 1111111123345666778899998877
Q ss_pred hhHHHHHHHHHHHHHhHHHHHHHHHHhhcchhhHHHHHHHHHHHHH
Q 018373 288 TTGFGVASSLGKVGGMVCPLVAVGLVTSCHLRLAVILFEVVFVLAI 333 (357)
Q Consensus 288 ~~~~~~~~~~~~l~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~ 333 (357)
....+..+....+++.++|.+...+.++.+....+.+.+.+.++..
T Consensus 320 ~~~~~~~~~~~~lG~~igp~~~G~l~~~~g~~~~f~~~~~~~l~~~ 365 (381)
T PRK03633 320 VAMNQALLLSYTVGSLLGPSFTAMLMQNYSDNLLFIMIASVSFIYL 365 (381)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHH
Confidence 7777777766778999999999988887665555666555555443
No 72
>PRK11128 putative 3-phenylpropionic acid transporter; Provisional
Probab=99.37 E-value=5.5e-10 Score=104.63 Aligned_cols=122 Identities=10% Similarity=-0.069 Sum_probs=70.0
Q ss_pred HHHhhhhhHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhhhhccccccCcch
Q 018373 208 IASLAELPGLILSAIIVDKIGRKLSMVLMFVSACIFLLPLVFHQSAVVTTVLLFGVRMCVTGTITVATIYAPEIYPTSAR 287 (357)
Q Consensus 208 i~~~~~~~~~~~~~~l~d~~GRR~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ElfPt~~R 287 (357)
+..+..++..++.+++.||+|+|+.+..+.+...+....+...++........+...+......+....+..+.-|. .+
T Consensus 248 ~~~~~~~~~~~~~g~l~~r~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~-~~ 326 (382)
T PRK11128 248 LGVVAEVLIFAFSNRLFRRWSARDLLLLSAICGVVRWGLMGSTTALPWLIVIQILHCGTFTVCHLAAMRYIAARPGS-EV 326 (382)
T ss_pred HHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHh-hh
Confidence 34556777788899999999999998877776665544333333322222111111121111223334456666444 46
Q ss_pred hhHHHHHHHHHH-HHHhHHHHHHHHHHhhcchhhHHHHHHHHHHH
Q 018373 288 TTGFGVASSLGK-VGGMVCPLVAVGLVTSCHLRLAVILFEVVFVL 331 (357)
Q Consensus 288 ~~~~~~~~~~~~-l~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~ 331 (357)
++..++.+.... ++..++|.+.+.+.+..+. ..++..+++.++
T Consensus 327 ~~~~~~~~~~~~~~g~~ig~~i~G~l~~~~g~-~~~~~~~~~~~~ 370 (382)
T PRK11128 327 IRLQALYSALAMGGSIAIMTVLSGFLYQHLGA-GVFWVMALVALP 370 (382)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccH-HHHHHHHHHHHH
Confidence 788887765543 4557888888888776543 334444444333
No 73
>PRK14995 methyl viologen resistance protein SmvA; Provisional
Probab=99.36 E-value=6.5e-10 Score=107.79 Aligned_cols=108 Identities=10% Similarity=0.038 Sum_probs=68.0
Q ss_pred HHHHhhhhhHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHh-h--hhhHHHHHHHHHHHHHhhhhhhhhhhhcccccc
Q 018373 207 FIASLAELPGLILSAIIVDKIGRKLSMVLMFVSACIFLLPLVF-H--QSAVVTTVLLFGVRMCVTGTITVATIYAPEIYP 283 (357)
Q Consensus 207 ~i~~~~~~~~~~~~~~l~d~~GRR~~~~~~~~~~~i~~~~~~~-~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ElfP 283 (357)
....++..++.++.+++.||+|||+.+..+..+..+....+.. . .+........+...+......+.......+..|
T Consensus 302 ~~~~~~~~~~~~~~g~l~~r~g~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~G~g~g~~~~~~~~~~~~~~~ 381 (495)
T PRK14995 302 LPVMVASGFSGPIAGILVSRLGLRLVATGGMALSALSFYGLAMTDFSTQQWQAWGLMALLGFSAASALLASTSAIMAAAP 381 (495)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhHHHHHHHHHHHHHhcCC
Confidence 3445667888899999999999999887766655443333222 1 122111111222222222233445666778899
Q ss_pred CcchhhHHHHHHHHHHHHHhHHHHHHHHHHh
Q 018373 284 TSARTTGFGVASSLGKVGGMVCPLVAVGLVT 314 (357)
Q Consensus 284 t~~R~~~~~~~~~~~~l~~~~~p~~~~~l~~ 314 (357)
.+.|+.+.++.+....+++.+++.+...+.+
T Consensus 382 ~~~~g~~~~~~~~~~~lG~~~G~ai~g~i~~ 412 (495)
T PRK14995 382 PEKAAAAGAIETMAYELGAGLGIAIFGLLLS 412 (495)
T ss_pred HHhcchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999988888887777766655443
No 74
>PRK10054 putative transporter; Provisional
Probab=99.35 E-value=2.9e-10 Score=107.08 Aligned_cols=127 Identities=15% Similarity=0.081 Sum_probs=77.5
Q ss_pred hhhhhHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHhh-hhhHHHHHHHHHHHHHhhhhhhhhhhhccccccCcchhh
Q 018373 211 LAELPGLILSAIIVDKIGRKLSMVLMFVSACIFLLPLVFH-QSAVVTTVLLFGVRMCVTGTITVATIYAPEIYPTSARTT 289 (357)
Q Consensus 211 ~~~~~~~~~~~~l~d~~GRR~~~~~~~~~~~i~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ElfPt~~R~~ 289 (357)
....+.....+.+.||.+||+.+..+.....+....+... ++.....+......+......+.......+.-|++.|++
T Consensus 255 ~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~p~~~~~~~~~~p~~~~~~ 334 (395)
T PRK10054 255 AMVVSLQYSVGRRLNAANIRPLMTAGTLCFVIGLVGFIFSGNSLLLWGMSAAVFTVGEIIYAPGEYMLIDHIAPPGMKAS 334 (395)
T ss_pred hheeeehhHHHHHHccCCchhHHHHHHHHHHHHHHHHHHcchHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhCCccccee
Confidence 3334445677889999999998877765544443333322 222111111111111112223455677889999999999
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHHhh
Q 018373 290 GFGVASSLGKVGGMVCPLVAVGLVTSCHLRLAVILFEVVFVLAIASSLL 338 (357)
Q Consensus 290 ~~~~~~~~~~l~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 338 (357)
..+.. +.++++..++|.+...+.+..+....+++.+.+..++.++...
T Consensus 335 ~~~~~-~~~~~G~~~Gp~~~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~ 382 (395)
T PRK10054 335 YFSAQ-SLGWLGAAINPLVSGVILTTLPPWSLFVILALAIVAAWLLMLK 382 (395)
T ss_pred hHhHH-HHHHHHHHHHHHHHHHHHHHcChhhHHHHHHHHHHHHHHHHHh
Confidence 98854 4678899999999998888765544455555555555555543
No 75
>PRK11652 emrD multidrug resistance protein D; Provisional
Probab=99.34 E-value=9.9e-10 Score=103.28 Aligned_cols=43 Identities=23% Similarity=0.229 Sum_probs=33.8
Q ss_pred hhhhhhhccccccCcchhhHHHHHHHHHHHHHhHHHHHHHHHHh
Q 018373 271 ITVATIYAPEIYPTSARTTGFGVASSLGKVGGMVCPLVAVGLVT 314 (357)
Q Consensus 271 ~~~~~~~~~ElfPt~~R~~~~~~~~~~~~l~~~~~p~~~~~l~~ 314 (357)
++....+..|.+| +.|+++.++.+....+++.+++.+...+..
T Consensus 317 ~~~~~~~~~~~~~-~~~g~~~~~~~~~~~lg~~~~~~~~~~~~~ 359 (394)
T PRK11652 317 FPLATSGAMEPFP-YLAGTAGALLGGLQNIGSGLAALLSAMLPQ 359 (394)
T ss_pred HHHHHHHHHhhcc-ccchHHHHHHHHHHHHHHHHHHHHHHHccC
Confidence 4556667788888 578999999998888999999888775543
No 76
>TIGR00885 fucP L-fucose:H+ symporter permease. This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector.
Probab=99.34 E-value=8.6e-10 Score=104.29 Aligned_cols=102 Identities=9% Similarity=0.071 Sum_probs=74.9
Q ss_pred hhhhhHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhhhhccccccCcchhhH
Q 018373 211 LAELPGLILSAIIVDKIGRKLSMVLMFVSACIFLLPLVFHQSAVVTTVLLFGVRMCVTGTITVATIYAPEIYPTSARTTG 290 (357)
Q Consensus 211 ~~~~~~~~~~~~l~d~~GRR~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ElfPt~~R~~~ 290 (357)
....+|.++++++.||+++|+.+.+...++.+..+........ .....+....++....++..+....+.++.+.+..+
T Consensus 280 ~~~~vGR~~~~~l~~r~~~~~~l~i~~~~~~~~~ll~~~~~~~-~~~~~l~~~glf~s~~fp~i~sl~~~~~g~~~~~~s 358 (410)
T TIGR00885 280 VIFFISRFIGTWLISYLAAHKVLMAYAIIGMALCLGSIFAGGH-VGLYCLTLCSAFMSLMFPTIYGIALKGLGQDTKYGA 358 (410)
T ss_pred HHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHcCCh-HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhH
Confidence 4568899999999999999999887777666655544442222 222333333445556678899999999999988778
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHhh
Q 018373 291 FGVASSLGKVGGMVCPLVAVGLVTS 315 (357)
Q Consensus 291 ~~~~~~~~~l~~~~~p~~~~~l~~~ 315 (357)
.+++.++ +|+.+.|.+...+.+.
T Consensus 359 ~~l~~~~--~Gga~~p~l~G~~~d~ 381 (410)
T TIGR00885 359 AGLVMAI--IGGGIVPPLQGFIIDM 381 (410)
T ss_pred HHHHHHH--hccchHHHHHHHHHHH
Confidence 8877766 8899999999988774
No 77
>KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]
Probab=99.34 E-value=2.9e-11 Score=115.31 Aligned_cols=252 Identities=16% Similarity=0.208 Sum_probs=134.8
Q ss_pred hhhhccccc--chhHHHHHHHHHHHHHHHHHHHHHHH------hcCcchHHHHHHhhHHHHHH-HHHHhcCCCChH--HH
Q 018373 9 GIISDNYGR--RGRWMVALSAFWTAGTIFEASLAWVV------MTRLNWRWLLAFSSVPSFAL-LLFYGLAPESPR--YL 77 (357)
Q Consensus 9 g~~~d~~gr--rg~~~~~~~~~~~~G~l~~~~i~~~~------~~~~~WR~~~~~~~~p~l~~-~~~~~~lpESP~--wL 77 (357)
-+++.+|+| ||..++++..+.++|.+++.++++.+ ....+||++|++..+..++. ++..+++|+.|. |.
T Consensus 157 ~~lg~wy~~~e~g~r~~~~~a~~~~g~i~ggliA~g~~~~~~~~~~~gW~~~FiI~G~i~~~~gi~~f~~lp~~P~~~~f 236 (495)
T KOG2533|consen 157 AILGNWYGKSERGLRMGIWYASASLGNIFGGLIAYGVFKLNGSGGLAGWRWLFIIEGVITLVLGIVVFFFLPDNPSKAWF 236 (495)
T ss_pred HHHHhhcChhhhhhhHHHHHHhcchhhHHHHHHHHHhhhhcCCCCcCCceeehhHHHHHHHHHHheEEEEecCChhhccc
Confidence 456777776 58888999999999999998888774 23579999999988766654 567788999997 44
Q ss_pred HHcCChHHHHHHHHHHHHHcCCCCCCCcccchhhhhhhhhhhhhhcchhhhhhhhhhhhhccchhhhhhhcchhhHHHHH
Q 018373 78 CAKARTVDAHRILEKMAFVNQTKLPPGILVSDKAIKENEESNLLRDTHMLSMTRKITDKLKSGFSSFFMLFSRKLIRTTL 157 (357)
Q Consensus 78 ~~~g~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 157 (357)
..+++++-+ .+++++.++.+ . .++.+..++++.++.+. ++
T Consensus 237 l~~~ek~~~---~~~~~~~~~~~-----~-----------------------------~~~~~~~~~~~a~~dp~---vw 276 (495)
T KOG2533|consen 237 LTDEEKELV---VERLRESPSGG-----I-----------------------------ENKFKWKGFKEALKDPG---VW 276 (495)
T ss_pred cchHHHHHH---HHHHHhccCCC-----c-----------------------------ccccCHHHHHHHHhchh---HH
Confidence 332221111 12222111000 0 00011223444443322 33
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhcCCCCCCCcccccCCCCCchhhHHHHHHHHhhhhhHHHHHHHHHHh----hchhHHH
Q 018373 158 LLWVLFFANVFSYYGAVLLTSKLSSGDNKCGSKVLHADKSKDNSLYVDVFIASLAELPGLILSAIIVDK----IGRKLSM 233 (357)
Q Consensus 158 ~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~d~----~GRR~~~ 233 (357)
...+..++.....|+...|.|.+..+ + ...+..+.+ ...+...++++++.++++++.|| ..+|...
T Consensus 277 ~~~l~~~~~~lv~~~~~~~lpl~l~~-~-------~~~s~~~a~--~ls~~~~~~g~v~~i~ag~lsdr~~~~~~~~~~~ 346 (495)
T KOG2533|consen 277 PFSLCYFFLKLVNYGFSYWLPLYLKS-N-------GGYSELQAN--LLSTPYDVGGIVGLILAGYLSDRLKTIFARRLLF 346 (495)
T ss_pred HHHHHHHHHhhccccHHHHHHHHHHc-C-------CCcChHHhc--cccchHHhhhHHHHHHHHHHHHHHhhhHHHHHHH
Confidence 33444555556666777777765432 0 001111111 11244577889999999999999 5566655
Q ss_pred HHHHHHHHHHH-HHHHhhhhhHHHHHHHHHHHHHhhhhhhhhhhhccccccCcchhhHHHHHHHHH-HHHHhHHHHHHH
Q 018373 234 VLMFVSACIFL-LPLVFHQSAVVTTVLLFGVRMCVTGTITVATIYAPEIYPTSARTTGFGVASSLG-KVGGMVCPLVAV 310 (357)
Q Consensus 234 ~~~~~~~~i~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ElfPt~~R~~~~~~~~~~~-~l~~~~~p~~~~ 310 (357)
.....+..+.. ..+.................+......+......++....+.|.......+..+ ..++.++|.+..
T Consensus 347 ~~~~~~~~~~g~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~s~~~~g~~k~~~~~~~~i~~~~s~~~~~~~~~~ 425 (495)
T KOG2533|consen 347 IVFLCLYAIIGAISLLAAAVLPGAYGAFLIGPYGLIATAIIALSWTSANLAGNTKALTTVSAIIDGTGSAGAISGQLFR 425 (495)
T ss_pred HHHHHHHHHHHHHHHHhhccchHHhHHHHhcchhhHHHHHHHHhhccccccchHHhHHHHhhhhcchhHHHHhhhhhcc
Confidence 54443333222 222222111111111111111111223445555666667777766666665554 456666666654
No 78
>PRK11646 multidrug resistance protein MdtH; Provisional
Probab=99.33 E-value=8e-10 Score=104.21 Aligned_cols=100 Identities=10% Similarity=0.009 Sum_probs=58.4
Q ss_pred HHHHHHHH-HhhchhHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhhhhccccccCcchhhHHHHHH
Q 018373 217 LILSAIIV-DKIGRKLSMVLMFVSACIFLLPLVFHQSAVVTTVLLFGVRMCVTGTITVATIYAPEIYPTSARTTGFGVAS 295 (357)
Q Consensus 217 ~~~~~~l~-d~~GRR~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ElfPt~~R~~~~~~~~ 295 (357)
....+... ||++.|+.+..+..+..+....+...++...................+....+..|..|.+.|+++.|+.+
T Consensus 260 ~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~g~~~~~p~~~~~~~~~~p~~~~g~~~g~~~ 339 (400)
T PRK11646 260 LYPIARWSEKRFRLEHRLMAGLLIMSLSMFPIGMVSNLQQLFTLICLFYIGSIIAEPARETLSASLADARARGSYMGFSR 339 (400)
T ss_pred HHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHccHHHHHHhcCCcccchhhhhHHH
Confidence 33334444 45665655555554444443333332222211111111111111223445678889999999999999999
Q ss_pred HHHHHHHhHHHHHHHHHHhhc
Q 018373 296 SLGKVGGMVCPLVAVGLVTSC 316 (357)
Q Consensus 296 ~~~~l~~~~~p~~~~~l~~~~ 316 (357)
....++..++|.+...+.+..
T Consensus 340 ~~~~~g~~ig~~l~G~l~~~~ 360 (400)
T PRK11646 340 LGLALGGAIGYIGGGWLFDLG 360 (400)
T ss_pred HHHHHHHHhcccchHHHHHHH
Confidence 888899999999988877754
No 79
>PRK10133 L-fucose transporter; Provisional
Probab=99.33 E-value=9.7e-10 Score=104.83 Aligned_cols=115 Identities=10% Similarity=0.026 Sum_probs=73.3
Q ss_pred HHHHhhhhhHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhhhhccccccCcc
Q 018373 207 FIASLAELPGLILSAIIVDKIGRKLSMVLMFVSACIFLLPLVFHQSAVVTTVLLFGVRMCVTGTITVATIYAPEIYPTSA 286 (357)
Q Consensus 207 ~i~~~~~~~~~~~~~~l~d~~GRR~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ElfPt~~ 286 (357)
....++.++|.++++++.||+|||+.+..+..++...+......... ..........++....++..+....|.+|.+
T Consensus 302 ~~~~~~~~vG~~~~g~l~~r~g~~~~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~glg~~~i~P~~~s~a~~~~~~~- 379 (438)
T PRK10133 302 TGTMVCFFIGRFTGTWLISRFAPHKVLAAYALIAMALCLISAFAGGH-VGLIALTLCSAFMSIQYPTIFSLGIKNLGQD- 379 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHcCCh-HHHHHHHHHHHHHHHHHHHHHHHHHcccchh-
Confidence 45567778999999999999999998877766554433332222121 1122222333444556778888899999875
Q ss_pred hhhHHHHHHHHHHHHHhHHHHHHHHHHhhcc-hhhHHHH
Q 018373 287 RTTGFGVASSLGKVGGMVCPLVAVGLVTSCH-LRLAVIL 324 (357)
Q Consensus 287 R~~~~~~~~~~~~l~~~~~p~~~~~l~~~~~-~~~~~~~ 324 (357)
.+++.++.. +..+++.+.|.+...+.+..+ ....+++
T Consensus 380 ~~~as~l~~-~~~~g~~~~~~i~G~l~~~~g~~~~~~~v 417 (438)
T PRK10133 380 TKYGSSFIV-MTIIGGGIVTPVMGFVSDAAGNIPTAELI 417 (438)
T ss_pred hccchhHHh-HHhccchHHHHHHHHHHHhccchHHHHHH
Confidence 566777665 445677778878777766554 3344443
No 80
>TIGR00896 CynX cyanate transporter. This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate.
Probab=99.32 E-value=3.6e-10 Score=104.73 Aligned_cols=110 Identities=14% Similarity=0.111 Sum_probs=67.1
Q ss_pred HHHHhhhhhHHHHHHHHHHhh-chhHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhhhhcc-ccccC
Q 018373 207 FIASLAELPGLILSAIIVDKI-GRKLSMVLMFVSACIFLLPLVFHQSAVVTTVLLFGVRMCVTGTITVATIYAP-EIYPT 284 (357)
Q Consensus 207 ~i~~~~~~~~~~~~~~l~d~~-GRR~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-ElfPt 284 (357)
.+..++.+++.++.+++.||+ +||+.+..+..+..+....+.......... ......+.....++....... +..|.
T Consensus 239 ~~~~~~~i~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~g~~~g~~~~~~~~~~~~~~~~~ 317 (355)
T TIGR00896 239 ALMQLAQAASALLIPALARRVKDQRGIVAVLAVLQLVGLCGLLFAPMHGLWA-WALVLGLGQGGAFPLALTLIGLRSRQA 317 (355)
T ss_pred HHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHHHHHHHHhhhhHHHH-HHHHHHHhhhhHhHHHHHHHHHhccCH
Confidence 345677889999999999999 566555555554444433333221111111 111122222223344444444 44456
Q ss_pred cchhhHHHHHHHHHHHHHhHHHHHHHHHHhhcc
Q 018373 285 SARTTGFGVASSLGKVGGMVCPLVAVGLVTSCH 317 (357)
Q Consensus 285 ~~R~~~~~~~~~~~~l~~~~~p~~~~~l~~~~~ 317 (357)
+.+++..++.+.++.+++.++|.+...+.+..+
T Consensus 318 ~~~g~~~~~~~~~~~~~~~~gp~~~G~l~~~~g 350 (355)
T TIGR00896 318 AQAAALSAMAQSIGYLLAALGPLFVGVLHDISG 350 (355)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 778999999999999999999999888877654
No 81
>TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator).
Probab=99.31 E-value=4.3e-11 Score=111.12 Aligned_cols=93 Identities=18% Similarity=0.273 Sum_probs=57.2
Q ss_pred HHHhhhhhHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHh--hh--hhHHHHHHHHHHHHHhhhhhhhhhhhcccccc
Q 018373 208 IASLAELPGLILSAIIVDKIGRKLSMVLMFVSACIFLLPLVF--HQ--SAVVTTVLLFGVRMCVTGTITVATIYAPEIYP 283 (357)
Q Consensus 208 i~~~~~~~~~~~~~~l~d~~GRR~~~~~~~~~~~i~~~~~~~--~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~ElfP 283 (357)
+..+..+++.++.+++.||+|||+.+..+..........+.. .. +............+......+..+.+.+|++|
T Consensus 269 ~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 348 (366)
T TIGR00886 269 LGGLLGSLARPLGGAISDRLGGARKLLMSFLGVAMGAFLVVLGLVSPLSLAVFIVLFVALFFFSGAGNGSTFALVPHIFR 348 (366)
T ss_pred HHHHHHHHHhhccchHHHhhccchhHHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHHhccccchhhhcchhhch
Confidence 445667888889999999999988776555443333322222 21 12111111212212222234567888999998
Q ss_pred CcchhhHHHHHHHHHHHH
Q 018373 284 TSARTTGFGVASSLGKVG 301 (357)
Q Consensus 284 t~~R~~~~~~~~~~~~l~ 301 (357)
+.|+++.|+.+.++.++
T Consensus 349 -~~~g~~~g~~~~~~~~g 365 (366)
T TIGR00886 349 -RATGAVSGLVGAIGNLG 365 (366)
T ss_pred -hhcccHHHHHHHhccCC
Confidence 69999999998887764
No 82
>PRK15403 multidrug efflux system protein MdtM; Provisional
Probab=99.30 E-value=2.9e-09 Score=100.88 Aligned_cols=57 Identities=16% Similarity=0.221 Sum_probs=39.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHhhHHHHHHHHH-HhcCCCChH
Q 018373 19 GRWMVALSAFWTAGTIFEASLAWVVMTRLNWRWLLAFSSVPSFALLLF-YGLAPESPR 75 (357)
Q Consensus 19 g~~~~~~~~~~~~G~l~~~~i~~~~~~~~~WR~~~~~~~~p~l~~~~~-~~~lpESP~ 75 (357)
++..+.......+|..++..++..+.+..+||+.|.+..+..++.++. .+++||+++
T Consensus 139 ~~~~~~~~~~~~~~~~~g~~lg~~l~~~~gw~~~f~~~~~~~~i~~~~~~~~lp~~~~ 196 (413)
T PRK15403 139 IKLMAIITSIVLVAPIIGPLSGAALMHFVHWKVLFAIIAVMGLIAFVGLLLAMPETVK 196 (413)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhCCCCcc
Confidence 344555556666677666666655555679999999988877765543 566899763
No 83
>TIGR00880 2_A_01_02 Multidrug resistance protein.
Probab=99.30 E-value=9.9e-11 Score=92.55 Aligned_cols=134 Identities=17% Similarity=0.214 Sum_probs=94.6
Q ss_pred HhhhhhHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhhhhccccccCcchhh
Q 018373 210 SLAELPGLILSAIIVDKIGRKLSMVLMFVSACIFLLPLVFHQSAVVTTVLLFGVRMCVTGTITVATIYAPEIYPTSARTT 289 (357)
Q Consensus 210 ~~~~~~~~~~~~~l~d~~GRR~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ElfPt~~R~~ 289 (357)
.++..++.++.+++.||+|||+.+..+.....+..+......+........+...+......+..+.+.+|.+|++.|++
T Consensus 8 ~~~~~~~~~~~g~~~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (141)
T TIGR00880 8 ALGQLIYSPLSGLLTDRFGRKPVLLVGLFIFVLSTAMFALSSNITVLIIARFLQGFGAAFALVAGAALIADIYPPEERGV 87 (141)
T ss_pred hhHHHHHHhhHHHHHhhcchhHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHCChhhhhH
Confidence 34556777888999999999999987776665554443332222222222222222323345677888999999999999
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHHhhccccc
Q 018373 290 GFGVASSLGKVGGMVCPLVAVGLVTSCHLRLAVILFEVVFVLAIASSLLFPFET 343 (357)
Q Consensus 290 ~~~~~~~~~~l~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~pet 343 (357)
+.++.+....++..++|.+...+.+..+....+.+.+.+..++.+..++..|||
T Consensus 88 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 141 (141)
T TIGR00880 88 ALGLMSAGIALGPLLGPPLGGVLAQFLGWRAPFLFLAILALAAFILLAFLLPET 141 (141)
T ss_pred HHHHHHHhHHHHHHHhHHhHHHHhcccchHHHHHHHHHHHHHHHHHHhhcCCCC
Confidence 999999999999999998888777655544566777777777777777777775
No 84
>PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions. Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins.
Probab=99.25 E-value=1.5e-08 Score=96.97 Aligned_cols=145 Identities=20% Similarity=0.280 Sum_probs=97.6
Q ss_pred hHHHHHHHHhhhhhHHHHHHHHHHhhchh--HHHHHHHHHHHH-HHHHHH-h------hhhhHHHHHHHHHHHHHhhhhh
Q 018373 202 LYVDVFIASLAELPGLILSAIIVDKIGRK--LSMVLMFVSACI-FLLPLV-F------HQSAVVTTVLLFGVRMCVTGTI 271 (357)
Q Consensus 202 ~~~~~~i~~~~~~~~~~~~~~l~d~~GRR--~~~~~~~~~~~i-~~~~~~-~------~~~~~~~~~~~~~~~~~~~~~~ 271 (357)
.....++..+.+++|.++.+++.||+|-| ++++.+.+...+ .+..+. . .++.+...++....+.+..+..
T Consensus 319 l~~~~l~~~i~a~~Ga~~~g~l~~r~g~k~~~~l~~~l~~~~~i~~~g~~G~~~~~~g~~~~~~f~~~a~~~G~~~G~~q 398 (477)
T PF11700_consen 319 LIVFGLVVQIVAIIGALLFGWLQDRFGPKTKRTLLISLILWIIIPLYGLFGFWPSFFGLKSPWEFWVLAVLIGLFMGGIQ 398 (477)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHHHHhhhcccCcccHHHHHHHHHHHHHHhhhHH
Confidence 34445667888999999999999999988 676655544322 222222 0 1222222222223333444556
Q ss_pred hhhhhhccccccCcchhhHHHHHHHHHHHHHhHHHHHHHHHHhhcch-hhHHHHHHHHHHHHHHHHhhccccccCcc
Q 018373 272 TVATIYAPEIYPTSARTTGFGVASSLGKVGGMVCPLVAVGLVTSCHL-RLAVILFEVVFVLAIASSLLFPFETMGRE 347 (357)
Q Consensus 272 ~~~~~~~~ElfPt~~R~~~~~~~~~~~~l~~~~~p~~~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~pet~~~~ 347 (357)
+..-.+.+|+-|....+.-.|+-...++..++++|.++..+.+..+. ..++....++.+++.++. +..++.|++.
T Consensus 399 s~sRs~~~~LiP~g~e~efFgly~i~gk~ss~lGPll~g~i~~~tg~~r~g~~~l~~lf~~gl~ll-~~v~~~~g~~ 474 (477)
T PF11700_consen 399 SASRSLFSRLIPPGREAEFFGLYAITGKASSWLGPLLFGLITDATGSQRYGFLFLLVLFLIGLILL-FFVDVEKGRE 474 (477)
T ss_pred HHHHHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHH-hhccchhhhh
Confidence 78889999999999999999999999999999999999988887663 344444455545554444 5567777765
No 85
>TIGR01299 synapt_SV2 synaptic vesicle protein SV2. This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices.
Probab=99.25 E-value=9.6e-10 Score=110.09 Aligned_cols=137 Identities=17% Similarity=0.209 Sum_probs=91.0
Q ss_pred HHHHhhhhhHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhhhhccccccCcc
Q 018373 207 FIASLAELPGLILSAIIVDKIGRKLSMVLMFVSACIFLLPLVFHQSAVVTTVLLFGVRMCVTGTITVATIYAPEIYPTSA 286 (357)
Q Consensus 207 ~i~~~~~~~~~~~~~~l~d~~GRR~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ElfPt~~ 286 (357)
.+..++.++|.++.++++||+|||+.++++.++.++..+...+..+.....+.-++..++..+..++.+.+++|.+|.+.
T Consensus 209 s~~~lG~iiG~li~G~LsDR~GRR~~lii~lil~~i~~ll~afa~s~~~llv~R~l~G~g~g~~~p~~~~~isE~~p~~~ 288 (742)
T TIGR01299 209 LIVYLGMMVGAFFWGGLADKLGRKQCLLICLSVNGFFAFFSSFVQGYGFFLFCRLLSGFGIGGAIPIVFSYFAEFLAQEK 288 (742)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHH
Confidence 34567788999999999999999999988776665554444433332222222333334444556788999999999999
Q ss_pred hhhHHHHHHHHHHHHHhHHHHHHHHHHhhcc-------------hhhHHHHHHHHHHHHHHHHhhcccccc
Q 018373 287 RTTGFGVASSLGKVGGMVCPLVAVGLVTSCH-------------LRLAVILFEVVFVLAIASSLLFPFETM 344 (357)
Q Consensus 287 R~~~~~~~~~~~~l~~~~~p~~~~~l~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~pet~ 344 (357)
|++..++......+++++++.+...+....+ +.. ++.+.++..+..++..+++||+.
T Consensus 289 Rg~~~g~~~~~~~iG~ila~~la~~il~~~G~~~~~g~~~~~~gWR~-l~~i~~lp~ll~ll~~~~lPESP 358 (742)
T TIGR01299 289 RGEHLSWLCMFWMIGGIYAAAMAWAIIPHYGWSFQMGSAYQFHSWRV-FVIVCAFPCVFAIGALTFMPESP 358 (742)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhccccccccccHHH-HHHHHHHHHHHHHHHHHHcCCCH
Confidence 9999999988888888888766554443221 122 23333344444455666789983
No 86
>PLN00028 nitrate transmembrane transporter; Provisional
Probab=99.25 E-value=9.1e-10 Score=106.23 Aligned_cols=183 Identities=15% Similarity=0.204 Sum_probs=103.2
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCCCcccccCCCCCchhhHHHHHHHHhhhhhHHHHHHHHHHhhc
Q 018373 149 SRKLIRTTLLLWVLFFANVFSYYGAVLLTSKLSSGDNKCGSKVLHADKSKDNSLYVDVFIASLAELPGLILSAIIVDKIG 228 (357)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~d~~G 228 (357)
++++++.....+..++......++.....|.+.++.+ -+..+.-.......++..++.++.+++.||+|
T Consensus 31 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g-----------ls~~~~g~~~~~~~~~~~~~~~~~G~l~dr~G 99 (476)
T PLN00028 31 ARPHMRAFHLSWISFFTCFVSTFAAAPLLPIIRDNLN-----------LTKSDIGNAGIASVSGSIFSRLAMGPVCDLYG 99 (476)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-----------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 4445555555555555444444554444444432111 11111111123345566788899999999999
Q ss_pred hhHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhhhhccccccCcchhhHHHHHHHHHHHHHhHHHHH
Q 018373 229 RKLSMVLMFVSACIFLLPLVFHQSAVVTTVLLFGVRMCVTGTITVATIYAPEIYPTSARTTGFGVASSLGKVGGMVCPLV 308 (357)
Q Consensus 229 RR~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ElfPt~~R~~~~~~~~~~~~l~~~~~p~~ 308 (357)
||+.+..+.+..++..+......+.....+..+...+.. +.......+.+|.||.+.|++++|+.+..+.+++.+++.+
T Consensus 100 ~r~~~~~~~~~~~~~~~~~~~~~s~~~l~~~r~l~G~~~-~~~~~~~~~i~~~~~~~~rg~a~g~~~~~~~~g~~~~~~~ 178 (476)
T PLN00028 100 PRYGSAFLLMLTAPAVFCMSLVSSATGFIAVRFFIGFSL-ATFVSCQYWMSTMFNGKIVGTANGIAAGWGNLGGGVTQLL 178 (476)
T ss_pred ChHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHH-HhhHHHHHHHHHhcChhheeHHHHHHHHHHHHHHHHHHHH
Confidence 999988777666555444333322222111112222221 1222334567899999999999999988877777766655
Q ss_pred HHHHHh----h-----cchhhHHHHHHHHHHHHHHHHhhccccc
Q 018373 309 AVGLVT----S-----CHLRLAVILFEVVFVLAIASSLLFPFET 343 (357)
Q Consensus 309 ~~~l~~----~-----~~~~~~~~~~~~~~~~~~~~~~~~~pet 343 (357)
.+.+.. . .++...+++.+++.++..+..++++++.
T Consensus 179 ~~~i~~~~~~~~~~~~~gWr~~f~i~g~l~l~~~l~~~~~~~~~ 222 (476)
T PLN00028 179 MPLVFPLIKDAGAPSFTAWRIAFFVPGLLHIIMGILVLTLGQDL 222 (476)
T ss_pred HHHHHHHHHhcCCcchhhhHHHHHHHHHHHHHHHHHHHHHcCcC
Confidence 543321 1 2344566777777766666666655443
No 87
>TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily. This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033.
Probab=99.24 E-value=6.4e-10 Score=103.84 Aligned_cols=141 Identities=16% Similarity=0.177 Sum_probs=98.6
Q ss_pred HHHHhhhhhHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhhhhccccccCcc
Q 018373 207 FIASLAELPGLILSAIIVDKIGRKLSMVLMFVSACIFLLPLVFHQSAVVTTVLLFGVRMCVTGTITVATIYAPEIYPTSA 286 (357)
Q Consensus 207 ~i~~~~~~~~~~~~~~l~d~~GRR~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ElfPt~~ 286 (357)
.+..++..++.++.+.+.||+|||+.+..+..+..+........++.....+..+...+......+....+.+|.+|.+.
T Consensus 47 ~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~ 126 (385)
T TIGR00710 47 TLYLLGFAAGQLLWGPLSDRYGRRPVLLLGLFIFALSSLGLALSNNIETLLVLRFVQAFGASAGSVISQALVRDIYPGEE 126 (385)
T ss_pred HHHHHHHHHHHHhhhhHHHhcCChHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHcchhHHHHHHHHHHHHhcCcHH
Confidence 34456678889999999999999999988777666555444433332222222222222222334566788999999999
Q ss_pred hhhHHHHHHHHHHHHHhHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHHhhccccccCcc
Q 018373 287 RTTGFGVASSLGKVGGMVCPLVAVGLVTSCHLRLAVILFEVVFVLAIASSLLFPFETMGRE 347 (357)
Q Consensus 287 R~~~~~~~~~~~~l~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~pet~~~~ 347 (357)
|+++.++.+....++..++|.+...+.+..++...+++.+++.++..+..++..||++.++
T Consensus 127 ~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (385)
T TIGR00710 127 LSRIYSILMPVLALAPAVAPLLGGYILVWLSWHAIFAFLSLAGILLSALIFFILPETLPYE 187 (385)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHhCCCCCCCc
Confidence 9999999999999999999988887776656556666667766666666666678876543
No 88
>TIGR02332 HpaX 4-hydroxyphenylacetate permease. This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially.
Probab=99.23 E-value=1.3e-09 Score=103.13 Aligned_cols=138 Identities=13% Similarity=0.021 Sum_probs=94.6
Q ss_pred HHHhhhhhHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhhhhccccccCcch
Q 018373 208 IASLAELPGLILSAIIVDKIGRKLSMVLMFVSACIFLLPLVFHQSAVVTTVLLFGVRMCVTGTITVATIYAPEIYPTSAR 287 (357)
Q Consensus 208 i~~~~~~~~~~~~~~l~d~~GRR~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ElfPt~~R 287 (357)
...++..++.+..+++.||+|||+.+..+.++..+........++.......-+...+...+.++....+.+|.||.+.|
T Consensus 51 ~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r 130 (412)
T TIGR02332 51 LFYAAYVICGIPSNIMLAIIGARRWIAGIMVLWGIASTATMFATGPESLYLLRILVGIAEAGFLPGILLYLTFWFPAYFR 130 (412)
T ss_pred HHHHHHHHHHhhHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCHHHH
Confidence 34556677888899999999999998877776655554444433322222222222233233345666789999999999
Q ss_pred hhHHHHHHHHHHHHHhHHHHHHHHHHhh------cchhhHHHHHHHHHHHHHHHHhhccccccC
Q 018373 288 TTGFGVASSLGKVGGMVCPLVAVGLVTS------CHLRLAVILFEVVFVLAIASSLLFPFETMG 345 (357)
Q Consensus 288 ~~~~~~~~~~~~l~~~~~p~~~~~l~~~------~~~~~~~~~~~~~~~~~~~~~~~~~pet~~ 345 (357)
+++.++.+....++..++|.+..++... .++...+++.++..++..++.++++||++.
T Consensus 131 g~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~gwr~~f~~~~~~~l~~~~~~~~~~~~~p~ 194 (412)
T TIGR02332 131 ARANALFMIAMPVTMALGLILSGYILALDGLMALKGWQWLFLLEGFPSVILGVMTWFWLDDSPD 194 (412)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCccchhHHHHHHHHHHHHHHHHHhhccCCCcc
Confidence 9999999988888888888887766531 345566677677766666667777788764
No 89
>PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily. EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function [].
Probab=99.23 E-value=5.2e-09 Score=101.29 Aligned_cols=139 Identities=14% Similarity=0.060 Sum_probs=89.8
Q ss_pred HHHHhhhhhHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhhhhccccccCcc
Q 018373 207 FIASLAELPGLILSAIIVDKIGRKLSMVLMFVSACIFLLPLVFHQSAVVTTVLLFGVRMCVTGTITVATIYAPEIYPTSA 286 (357)
Q Consensus 207 ~i~~~~~~~~~~~~~~l~d~~GRR~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ElfPt~~ 286 (357)
...+++.++|.++...+-+|+++++++..+.++.++.++.+.+..+.+......+..+++.....+...+..-+.-|.++
T Consensus 261 a~~gvGai~Gal~~~~l~~~~~~~~lv~~~~~~~a~~~~~lal~~~~~~~~~~l~l~G~~~~~~~~~~~t~~Q~~~P~~~ 340 (524)
T PF05977_consen 261 AAFGVGAILGALLLPRLRRRLSSRRLVLLASLLFALALLLLALSPSFWLALIALFLAGAAWIIANSSLNTLVQLSVPDWV 340 (524)
T ss_pred HHHHHHHHHHHHHHHHhhcccCcchhhHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHH
Confidence 34567778888888888888888888877777766666655554444333333333333333334455677889999999
Q ss_pred hhhHHHHHHHHHHHHHhHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHHh-hccccccC
Q 018373 287 RTTGFGVASSLGKVGGMVCPLVAVGLVTSCHLRLAVILFEVVFVLAIASSL-LFPFETMG 345 (357)
Q Consensus 287 R~~~~~~~~~~~~l~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~pet~~ 345 (357)
|++..++...+...+..++..+.+.+.+..+....+.+-++..+++.++.. .-+|+.+.
T Consensus 341 ~GRv~si~~~~~~g~~~lGsll~G~la~~~g~~~al~~a~~~lll~~~~~~~~~l~~~~~ 400 (524)
T PF05977_consen 341 RGRVFSIYQMVFFGGMPLGSLLWGFLADHFGVRTALLIAGAALLLSALIALRFPLRQGEE 400 (524)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHhcCccccc
Confidence 999999998888777777777777777766655444444444444444433 23444443
No 90
>TIGR00895 2A0115 benzoate transport.
Probab=99.23 E-value=4.7e-10 Score=104.95 Aligned_cols=138 Identities=17% Similarity=0.178 Sum_probs=95.8
Q ss_pred HHHhhhhhHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhhhhccccccCcch
Q 018373 208 IASLAELPGLILSAIIVDKIGRKLSMVLMFVSACIFLLPLVFHQSAVVTTVLLFGVRMCVTGTITVATIYAPEIYPTSAR 287 (357)
Q Consensus 208 i~~~~~~~~~~~~~~l~d~~GRR~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ElfPt~~R 287 (357)
+..++..++.++.+++.||+|||+.+..+..+..+.........+.....+..+...+......+....+.+|.+|.+.|
T Consensus 60 ~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r 139 (398)
T TIGR00895 60 AGLIGMAFGALFFGPLADRIGRKRVLLWSILLFSVFTLLCALATNVTQLLILRFLAGLGLGGLMPNLNALVSEYAPKRFR 139 (398)
T ss_pred HHHHHHHHHHHHhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHhcccccchhhHHHHHHHHcCHHhh
Confidence 44566788899999999999999999887776655544444333222222222222222233456778899999999999
Q ss_pred hhHHHHHHHHHHHHHhHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHHhhccccccC
Q 018373 288 TTGFGVASSLGKVGGMVCPLVAVGLVTSCHLRLAVILFEVVFVLAIASSLLFPFETMG 345 (357)
Q Consensus 288 ~~~~~~~~~~~~l~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~pet~~ 345 (357)
+++.++......++..++|.+...+.+..++...+++.++...+..++.+.+.||+..
T Consensus 140 ~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 197 (398)
T TIGR00895 140 GTAVGLMFCGYPIGAAVGGFLAGWLIPVFGWRSLFYVGGIAPLLLLLLLMRFLPESID 197 (398)
T ss_pred chhHhhHhhHHHHHHHHHHHHHHHHhhcccceeehhhhhhHHHHHHHHHHHhCCCCCh
Confidence 9999999999999999999888777766555555666655666666666666777643
No 91
>PRK10213 nepI ribonucleoside transporter; Reviewed
Probab=99.20 E-value=2.3e-09 Score=100.85 Aligned_cols=138 Identities=12% Similarity=0.060 Sum_probs=95.8
Q ss_pred HHHhhhhhHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhhhhccccccCcch
Q 018373 208 IASLAELPGLILSAIIVDKIGRKLSMVLMFVSACIFLLPLVFHQSAVVTTVLLFGVRMCVTGTITVATIYAPEIYPTSAR 287 (357)
Q Consensus 208 i~~~~~~~~~~~~~~l~d~~GRR~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ElfPt~~R 287 (357)
...+...++.++.+.+.||+|||+.++.+.++.++..+.....++.+...+.-+...+......+....+.+|.+|.+.|
T Consensus 63 ~~~~~~~~~~~~~g~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~~ 142 (394)
T PRK10213 63 VTAFVAMFASLFITQTIQATDRRYVVILFAVLLTLSCLLVSFANSFSLLLIGRACLGLALGGFWAMSASLTMRLVPPRTV 142 (394)
T ss_pred HHHHHHHHHHHHHHHHhcccCcHHHHHHHHHHHHHHHHHHHHHChHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCHhHH
Confidence 44566677888999999999999999888877766554443333222222222222222233345677788999999999
Q ss_pred hhHHHHHHHHHHHHHhHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHHhhccccccC
Q 018373 288 TTGFGVASSLGKVGGMVCPLVAVGLVTSCHLRLAVILFEVVFVLAIASSLLFPFETMG 345 (357)
Q Consensus 288 ~~~~~~~~~~~~l~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~pet~~ 345 (357)
+.+.++......++..++|.+...+.+..++...+++.+.+++++.+......||+++
T Consensus 143 ~~a~~~~~~~~~~g~~ig~~l~~~l~~~~gw~~~f~~~~~l~~~~~l~~~~~~p~~~~ 200 (394)
T PRK10213 143 PKALSVIFGAVSIALVIAAPLGSFLGELIGWRNVFNAAAVMGVLCIFWIIKSLPSLPG 200 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHCCCCCc
Confidence 9999999998889988999888887776666666666666665555555555677643
No 92
>PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional
Probab=99.20 E-value=1.3e-09 Score=102.81 Aligned_cols=138 Identities=17% Similarity=0.141 Sum_probs=92.6
Q ss_pred HHHHhhhhhHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhhhhccccccCcc
Q 018373 207 FIASLAELPGLILSAIIVDKIGRKLSMVLMFVSACIFLLPLVFHQSAVVTTVLLFGVRMCVTGTITVATIYAPEIYPTSA 286 (357)
Q Consensus 207 ~i~~~~~~~~~~~~~~l~d~~GRR~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ElfPt~~ 286 (357)
....++..++.++.+++.||+|||+.+..+.++..+..+......+.....+..+...+......+....+.+|.+|.+.
T Consensus 57 ~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~ 136 (406)
T PRK11551 57 SAGILGLLPGALLGGRLADRIGRKRILIVSVALFGLFSLATAQAWDFPSLLVARLLTGVGLGGALPNLIALTSEAVGPRL 136 (406)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhHHHHHHHHHHHHHHHcCHHH
Confidence 34566778889999999999999999988776655544433333322222222222222223334566788999999999
Q ss_pred hhhHHHHHHHHHHHHHhHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHHhhcccccc
Q 018373 287 RTTGFGVASSLGKVGGMVCPLVAVGLVTSCHLRLAVILFEVVFVLAIASSLLFPFETM 344 (357)
Q Consensus 287 R~~~~~~~~~~~~l~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~pet~ 344 (357)
|++++++.+....+++.++|.+...+.+..++...+++.+++.++..+...++.||+.
T Consensus 137 r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 194 (406)
T PRK11551 137 RGTAVSLMYCGVPFGGALASVIGVLAAGDAAWRHIFYVGGVGPLLLVPLLMRWLPESR 194 (406)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHccccCHHHHHHHHHHHHHHHHHHHHHhCCCCh
Confidence 9999999998888888888887665555444555566666555555555556667764
No 93
>COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism]
Probab=99.18 E-value=3.3e-09 Score=96.77 Aligned_cols=128 Identities=17% Similarity=0.226 Sum_probs=88.8
Q ss_pred hhhhhHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHhhh------h-hHHHHHHHHHHHHHhhhhhhhhhhhcccccc
Q 018373 211 LAELPGLILSAIIVDKIGRKLSMVLMFVSACIFLLPLVFHQ------S-AVVTTVLLFGVRMCVTGTITVATIYAPEIYP 283 (357)
Q Consensus 211 ~~~~~~~~~~~~l~d~~GRR~~~~~~~~~~~i~~~~~~~~~------~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ElfP 283 (357)
+.+.+.-.++|++.||+|.|+.++..+..+.++........ . .............+.....+..+-+++-+||
T Consensus 265 ~~g~l~Rp~GG~LsDR~Gg~rv~~~~f~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~l~~~~G~GnGsvfk~Ip~if~ 344 (417)
T COG2223 265 LIGALARPLGGWLSDRIGGRRVTLAVFVGMALAAALLSLFLTGFGHGGSFVVFVAVFLALFVFAGLGNGSVFKMIPVIFP 344 (417)
T ss_pred HHHHHHHhccchhhhhccchhHHHHHHHHHHHHHHHHHccccccccCcchHHHHHHHHHHHHHhccCcchheeechHHHH
Confidence 34445566889999999999998888887777666554321 1 1111121222222333345678999999999
Q ss_pred CcchhhHHHHHHHHHHHHHhHHHHHHHHHHhhcc-hhhHHHHHHHHHHHHHHHHhhc
Q 018373 284 TSARTTGFGVASSLGKVGGMVCPLVAVGLVTSCH-LRLAVILFEVVFVLAIASSLLF 339 (357)
Q Consensus 284 t~~R~~~~~~~~~~~~l~~~~~p~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 339 (357)
. .-+...|+..+++.++++.-|..+....+..+ ....++++..+.+++.+.++..
T Consensus 345 ~-~~G~v~G~vga~G~lGGf~lp~~~g~~~~~tg~~~~~f~~~~~~~~~a~v~~~~~ 400 (417)
T COG2223 345 K-ETGAVTGIVGAIGGLGGFFLPLAFGVSLDLTGSYTGAFMLLLAFYLVALVLTWAL 400 (417)
T ss_pred h-hhhHHHHHHHHhccccccchhHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHH
Confidence 8 45668899999999999999999887777766 4466778888888887766653
No 94
>PRK10473 multidrug efflux system protein MdtL; Provisional
Probab=99.18 E-value=2e-09 Score=101.19 Aligned_cols=140 Identities=12% Similarity=0.052 Sum_probs=96.1
Q ss_pred HHHHhhhhhHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhhhhccccccCcc
Q 018373 207 FIASLAELPGLILSAIIVDKIGRKLSMVLMFVSACIFLLPLVFHQSAVVTTVLLFGVRMCVTGTITVATIYAPEIYPTSA 286 (357)
Q Consensus 207 ~i~~~~~~~~~~~~~~l~d~~GRR~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ElfPt~~ 286 (357)
.+..++..++.++.|++.||+|||+.++.+..+..+.........+........+...+......+..+.+.+|.+|.+.
T Consensus 45 ~~~~~~~~~~~~~~G~l~Dr~g~r~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~ 124 (392)
T PRK10473 45 SVYLAGMAAAMLFAGKIADRSGRKPVAIPGAALFIIASLLCSLAETSSLFLAGRFLQGIGAGCCYVVAFAILRDTLDDRR 124 (392)
T ss_pred HHHHHHHHHHHHhHhHHHHHhCChHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhhhHHHHHHHHHHHHHcCHHH
Confidence 34455667788899999999999999988776665554443333222221111122222222334567889999999999
Q ss_pred hhhHHHHHHHHHHHHHhHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHHhhccccccCc
Q 018373 287 RTTGFGVASSLGKVGGMVCPLVAVGLVTSCHLRLAVILFEVVFVLAIASSLLFPFETMGR 346 (357)
Q Consensus 287 R~~~~~~~~~~~~l~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~pet~~~ 346 (357)
|+++.++.+....++..++|.+...+.+..++...+++++++.++..++.++..||++.+
T Consensus 125 r~~~~~~~~~~~~i~~~~~~~i~~~l~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 184 (392)
T PRK10473 125 RAKVLSLLNGITCIIPVLAPVLGHLIMLKFPWQSLFYTMAAMGILVLLLSLFILKETRPA 184 (392)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCcChHHHHHHHHHHHHHHHHHHHHHcCCCCCc
Confidence 999999999998888888888877665555555566777777777767666667887544
No 95
>PRK15402 multidrug efflux system translocase MdfA; Provisional
Probab=99.17 E-value=2.5e-09 Score=100.99 Aligned_cols=139 Identities=18% Similarity=0.114 Sum_probs=94.7
Q ss_pred HHHHhhhhhHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhhhhccccccCcc
Q 018373 207 FIASLAELPGLILSAIIVDKIGRKLSMVLMFVSACIFLLPLVFHQSAVVTTVLLFGVRMCVTGTITVATIYAPEIYPTSA 286 (357)
Q Consensus 207 ~i~~~~~~~~~~~~~~l~d~~GRR~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ElfPt~~ 286 (357)
....++..++.++.+.+.||+|||+.++.+.....+........++........+..........+..+.+.+|.+|.+.
T Consensus 55 ~~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~ 134 (406)
T PRK15402 55 TAYLAGGMFLQWLLGPLSDRIGRRPVMLAGVAFFILTCLAILLAQSIEQFTLLRFLQGIGLCFIGAVGYAAIQESFEEAD 134 (406)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhHhhhHHHHHHHHHHHHhChhH
Confidence 34456677888899999999999999888776655554443333222221111121111112223466778899999999
Q ss_pred hhhHHHHHHHHHHHHHhHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHHhhccccccC
Q 018373 287 RTTGFGVASSLGKVGGMVCPLVAVGLVTSCHLRLAVILFEVVFVLAIASSLLFPFETMG 345 (357)
Q Consensus 287 R~~~~~~~~~~~~l~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~pet~~ 345 (357)
|..+.++......++..++|.+...+.+..++...+++.+++.+++.+..++..||++.
T Consensus 135 ~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (406)
T PRK15402 135 AIKITALMANVALLAPLLGPLVGAALIHVLPWRGMFVLFAALAALSFFGLWRAMPETAG 193 (406)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHccCccHHHHHHHHHHHHHHHHHHHhCCCCCc
Confidence 99999998888888888888887777665555666777777777776666666788764
No 96
>PRK09669 putative symporter YagG; Provisional
Probab=99.16 E-value=3.7e-08 Score=94.20 Aligned_cols=146 Identities=14% Similarity=0.047 Sum_probs=83.5
Q ss_pred HhhhhhHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHH-hh-hhhHHHHHHHHHHHHHhhhhhhhhhhhcccccc----
Q 018373 210 SLAELPGLILSAIIVDKIGRKLSMVLMFVSACIFLLPLV-FH-QSAVVTTVLLFGVRMCVTGTITVATIYAPEIYP---- 283 (357)
Q Consensus 210 ~~~~~~~~~~~~~l~d~~GRR~~~~~~~~~~~i~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ElfP---- 283 (357)
.+..+++.++.+++.||+|||+.+..+..+..+....+. .. ++.....+......+......++.+.+.+|..+
T Consensus 274 ~i~~ii~~~~~~~l~~r~gk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~am~ad~~d~~e~ 353 (444)
T PRK09669 274 MIAGLFGALLSERLLGKFDRVRAFKWTIVAFVILSALIFFIPPSNVWLIFALNILFNFIQNLTTPLQWSMFSDVVDYEEK 353 (444)
T ss_pred HHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhh
Confidence 455667788889999999999998876654443222222 22 222222222222223333445678899999886
Q ss_pred ---CcchhhHHHHHHHHHHHHHhHHHHHHHHHHhhcchh------------hHHHHHHH----HHHHHHHHHhhcccccc
Q 018373 284 ---TSARTTGFGVASSLGKVGGMVCPLVAVGLVTSCHLR------------LAVILFEV----VFVLAIASSLLFPFETM 344 (357)
Q Consensus 284 ---t~~R~~~~~~~~~~~~l~~~~~p~~~~~l~~~~~~~------------~~~~~~~~----~~~~~~~~~~~~~pet~ 344 (357)
.+..+...|+.+.+..++..++|.+...+++..+.. ..-+.++. +.+++.++. ...|-|+
T Consensus 354 ~~G~r~~g~~~s~~~~~~klg~alg~~i~g~ll~~~Gy~~~~~~q~~~~~~~i~~~~~~~p~~~~~~~~~~~-~~y~l~~ 432 (444)
T PRK09669 354 RSGRRLDGLVFSTNLFAIKLGLAIGGAVVGWILAWVDYVGGAAVQSASVLTTINLLFTVIPGVLFAGMAIIL-NFYKLND 432 (444)
T ss_pred hcCcCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH-HhccCCH
Confidence 334456667777777888888888877666543320 00122222 223333333 3345554
Q ss_pred CcchhhhHhhhhC
Q 018373 345 GRELKDTVDAIES 357 (357)
Q Consensus 345 ~~~l~e~~~~~~~ 357 (357)
+..+|+.+|+|.
T Consensus 433 -~~~~~i~~~l~~ 444 (444)
T PRK09669 433 -ARVEAIAQELVK 444 (444)
T ss_pred -HHHHHHHHHHhC
Confidence 346888888874
No 97
>PRK03893 putative sialic acid transporter; Provisional
Probab=99.16 E-value=3e-09 Score=103.13 Aligned_cols=136 Identities=19% Similarity=0.157 Sum_probs=89.4
Q ss_pred HHHhhhhhHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhhhhccccccCcch
Q 018373 208 IASLAELPGLILSAIIVDKIGRKLSMVLMFVSACIFLLPLVFHQSAVVTTVLLFGVRMCVTGTITVATIYAPEIYPTSAR 287 (357)
Q Consensus 208 i~~~~~~~~~~~~~~l~d~~GRR~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ElfPt~~R 287 (357)
...++..++.++.+++.||+|||+.+..+.++.++..+......+.....+..+...+...+.++....+..|.+|.+.|
T Consensus 63 ~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r 142 (496)
T PRK03893 63 AAFISRWFGGLLLGAMGDRYGRRLAMVISIVLFSVGTLACGFAPGYWTLFIARLVIGMGMAGEYGSSATYVIESWPKHLR 142 (496)
T ss_pred HHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHH
Confidence 44567788899999999999999999887776655554444433322222222222233333456677889999999999
Q ss_pred hhHHHHHHHHHHHHHhHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHHhhcccccc
Q 018373 288 TTGFGVASSLGKVGGMVCPLVAVGLVTSCHLRLAVILFEVVFVLAIASSLLFPFETM 344 (357)
Q Consensus 288 ~~~~~~~~~~~~l~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~pet~ 344 (357)
+++.++.+....+++.++|.+...+.+..++...+++ +++..+..++.....||++
T Consensus 143 ~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~w~~~f~~-~~~~~~~~~~~~~~~p~~~ 198 (496)
T PRK03893 143 NKASGFLISGFSIGAVVAAQVYSLVVPVWGWRALFFI-GILPIIFALWLRKNLPEAE 198 (496)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHH-HHHHHHHHHHHHHhCCCch
Confidence 9999999998899999999888877665554444433 2332333333334456654
No 98
>PRK10504 putative transporter; Provisional
Probab=99.15 E-value=3.5e-09 Score=101.96 Aligned_cols=136 Identities=13% Similarity=0.063 Sum_probs=91.9
Q ss_pred HHhhhhhHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhhhhccccccCcchh
Q 018373 209 ASLAELPGLILSAIIVDKIGRKLSMVLMFVSACIFLLPLVFHQSAVVTTVLLFGVRMCVTGTITVATIYAPEIYPTSART 288 (357)
Q Consensus 209 ~~~~~~~~~~~~~~l~d~~GRR~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ElfPt~~R~ 288 (357)
..+...++.++.+++.||+|||+.++.+..+.++..+.....++........+...+......+....+..|.+|.+.|+
T Consensus 54 ~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~ 133 (471)
T PRK10504 54 YVLTVAVMLPASGWLADRVGVRNIFFTAIVLFTLGSLFCALSGTLNELLLARVLQGVGGAMMVPVGRLTVMKIVPREQYM 133 (471)
T ss_pred HHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcCHHHHH
Confidence 34556778899999999999999988776655444433333222222112222222222233456778889999999999
Q ss_pred hHHHHHHHHHHHHHhHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHHhhcccccc
Q 018373 289 TGFGVASSLGKVGGMVCPLVAVGLVTSCHLRLAVILFEVVFVLAIASSLLFPFETM 344 (357)
Q Consensus 289 ~~~~~~~~~~~l~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~pet~ 344 (357)
++.|+.+....++..++|.+...+.+..++.+.+.+....+.++.+......|+.+
T Consensus 134 ~~~~~~~~~~~~g~~~g~~~~g~l~~~~gw~~~f~~~~~~~~l~~~~~~~~~~~~~ 189 (471)
T PRK10504 134 AAMTFVTLPGQVGPLLGPALGGLLVEYASWHWIFLINIPVGIIGAIATLMLMPNYT 189 (471)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHhCCCcc
Confidence 99999999889999999998887777666555666665556666666666666544
No 99
>PRK15462 dipeptide/tripeptide permease D; Provisional
Probab=99.15 E-value=2.5e-09 Score=102.29 Aligned_cols=166 Identities=20% Similarity=0.240 Sum_probs=99.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCCCcccccCCCCCchhhHHHHHHHHhhhhhHHHHHHHHHHhh-chhHHHH
Q 018373 156 TLLLWVLFFANVFSYYGAVLLTSKLSSGDNKCGSKVLHADKSKDNSLYVDVFIASLAELPGLILSAIIVDKI-GRKLSMV 234 (357)
Q Consensus 156 ~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~d~~-GRR~~~~ 234 (357)
...+....+...+.||+...+.+.+..+. . .-+................++.+++|++.||+ |||+.++
T Consensus 11 l~~l~~~~~~e~fs~Yg~~~~L~~yL~~~-------l---gls~~~a~~i~~~~~~~~~l~~ligG~LaDRilGrrr~il 80 (493)
T PRK15462 11 IYYVVALQIWEYFSFYGMRALLILYLTNQ-------L---KYDDNHAYELFSAYCSLVYVTPILGGFLADKVLGNRMAVM 80 (493)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh-------c---CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCcHHHHH
Confidence 33444444556677888776666543211 0 01111212223344456677888999999999 9999988
Q ss_pred HHHHHHHHHHHHHHhhh-hhHHHHHHHHHHHHHhhhh-hhhhhhhccccccCc--chhhHHHHHHHHHHHHHhHHHHHHH
Q 018373 235 LMFVSACIFLLPLVFHQ-SAVVTTVLLFGVRMCVTGT-ITVATIYAPEIYPTS--ARTTGFGVASSLGKVGGMVCPLVAV 310 (357)
Q Consensus 235 ~~~~~~~i~~~~~~~~~-~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ElfPt~--~R~~~~~~~~~~~~l~~~~~p~~~~ 310 (357)
.+.+...+..+.+.... ............ ....+. .+....+.+|+||++ .|.++.++.+..++++++++|.+.+
T Consensus 81 iG~il~~lg~lll~~~~~~~~~~~l~l~li-~iG~G~~~~~~~alv~elfp~~~~~R~sgf~i~Y~~~nlG~~iap~l~g 159 (493)
T PRK15462 81 LGALLMAIGHVVLGASEIHPSFLYLSLAII-VCGYGLFKSNVSCLLGELYEPTDPRRDGGFSLMYAAGNVGSIIAPIACG 159 (493)
T ss_pred HHHHHHHHHHHHHHHhhcchhHHHHHHHHH-HHhcccccccHHHHHHHHCCCCCccccceehHHHHHHHHHHHHHHHHHH
Confidence 87776555443333221 111111111111 111222 244567899999986 7999999999999999999999999
Q ss_pred HHHhhcchhhHHHHHHHHHHHH
Q 018373 311 GLVTSCHLRLAVILFEVVFVLA 332 (357)
Q Consensus 311 ~l~~~~~~~~~~~~~~~~~~~~ 332 (357)
++.+..+....|.+.++..+++
T Consensus 160 ~L~~~~Gw~~~F~iaaigm~l~ 181 (493)
T PRK15462 160 YAQEEYSWAMGFGLAAVGMIAG 181 (493)
T ss_pred HHHhhhChHHHHHHHHHHHHHH
Confidence 8877666555565544333333
No 100
>PF03825 Nuc_H_symport: Nucleoside H+ symporter
Probab=99.15 E-value=4.3e-08 Score=92.02 Aligned_cols=137 Identities=18% Similarity=0.240 Sum_probs=88.0
Q ss_pred HHHHhhhhhHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHhh-hhhHHHHHHHHH----HHHHhhhhhhhhhhhcccc
Q 018373 207 FIASLAELPGLILSAIIVDKIGRKLSMVLMFVSACIFLLPLVFH-QSAVVTTVLLFG----VRMCVTGTITVATIYAPEI 281 (357)
Q Consensus 207 ~i~~~~~~~~~~~~~~l~d~~GRR~~~~~~~~~~~i~~~~~~~~-~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~El 281 (357)
.+..+.+++.....+++..|+|-|++++++.+...+=...+... ++.......... -.......+.....|..|.
T Consensus 250 ~l~~~aEi~~f~~~~~~~~r~g~~~ll~~a~~~~~vR~~l~a~~~~~~~~~~~~~~l~q~lhG~tf~~~~~a~~~yi~~~ 329 (400)
T PF03825_consen 250 ALGVVAEIPFFFFSGRFLKRFGIKWLLLLALVAYAVRWLLYAYFSDPWPFIVALQLLGQLLHGLTFGLFHAASVRYIDRI 329 (400)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHh
Confidence 45667889999999999999999999988887766533333333 222221111111 1111122345667889999
Q ss_pred ccCcchhhHHHHHHHHH-HHHHhHHHHHHHHHHhhcchhh------HHHHHHHHHHHHHHHHhhccccc
Q 018373 282 YPTSARTTGFGVASSLG-KVGGMVCPLVAVGLVTSCHLRL------AVILFEVVFVLAIASSLLFPFET 343 (357)
Q Consensus 282 fPt~~R~~~~~~~~~~~-~l~~~~~p~~~~~l~~~~~~~~------~~~~~~~~~~~~~~~~~~~~pet 343 (357)
.|.+.|++++++-+.+. -+++.++.++.+++.+..+... .+.+.+++.++..++.+++.+|+
T Consensus 330 ~p~~~~at~Q~l~~~~~~Glg~~iG~~igG~l~~~~g~~~~~~~~~~~~v~a~~~~~~~~~f~~~fk~~ 398 (400)
T PF03825_consen 330 APPELRATAQGLYSALSFGLGGAIGSLIGGWLYDAFGARGMFDWSAVFLVFAVMALVILVLFVILFKPK 398 (400)
T ss_pred CCccchHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHHHHHHHHHHHhhccCC
Confidence 99999999999988876 4788888888888887655332 22334444444444444444444
No 101
>PRK15403 multidrug efflux system protein MdtM; Provisional
Probab=99.14 E-value=3.8e-09 Score=100.06 Aligned_cols=138 Identities=17% Similarity=0.161 Sum_probs=94.3
Q ss_pred HHHhhhhhHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhhhhccccccCcch
Q 018373 208 IASLAELPGLILSAIIVDKIGRKLSMVLMFVSACIFLLPLVFHQSAVVTTVLLFGVRMCVTGTITVATIYAPEIYPTSAR 287 (357)
Q Consensus 208 i~~~~~~~~~~~~~~l~d~~GRR~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ElfPt~~R 287 (357)
+..++..++.++.+.+.||+|||+.++.+.++..+..+.....++.....+.-+...+......+..+.+.+|.||.+.|
T Consensus 59 ~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~a~~~~~l~~~r~l~Gi~~~~~~~~~~~~~~~~~~~~~~ 138 (413)
T PRK15403 59 LYLAGGMALQWLLGPLSDRIGRRPVLITGALIFTLACAATLFTTSMTQFLIARFIQGTSICFIATVGYVTVQEAFGQTKG 138 (413)
T ss_pred HHHHHHHHHHHhhhHHHHHcCchHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHH
Confidence 33466677888999999999999999887766555444433332222211111111111112234567889999999999
Q ss_pred hhHHHHHHHHHHHHHhHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHHhhccccccC
Q 018373 288 TTGFGVASSLGKVGGMVCPLVAVGLVTSCHLRLAVILFEVVFVLAIASSLLFPFETMG 345 (357)
Q Consensus 288 ~~~~~~~~~~~~l~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~pet~~ 345 (357)
++++++.+....++..++|.+...+.+..++...|++.++..+++.+..++..|||+.
T Consensus 139 ~~~~~~~~~~~~~~~~~g~~lg~~l~~~~gw~~~f~~~~~~~~i~~~~~~~~lp~~~~ 196 (413)
T PRK15403 139 IKLMAIITSIVLVAPIIGPLSGAALMHFVHWKVLFAIIAVMGLIAFVGLLLAMPETVK 196 (413)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhCCCCcc
Confidence 9999999999899988898887777666566667777777777776666666788764
No 102
>TIGR00887 2A0109 phosphate:H+ symporter. This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083).
Probab=99.13 E-value=8.7e-09 Score=100.16 Aligned_cols=105 Identities=17% Similarity=0.186 Sum_probs=73.1
Q ss_pred HHHHhhhhhHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHhhhh------hHHHHHHHHHHHHHhhhhhhhhhhhccc
Q 018373 207 FIASLAELPGLILSAIIVDKIGRKLSMVLMFVSACIFLLPLVFHQS------AVVTTVLLFGVRMCVTGTITVATIYAPE 280 (357)
Q Consensus 207 ~i~~~~~~~~~~~~~~l~d~~GRR~~~~~~~~~~~i~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~E 280 (357)
....++.+++.++.+++.||+|||+.+..+.++..+..+......+ .....+.-+...+...+.++....+.+|
T Consensus 63 ~~~~ig~~ig~~~~g~l~d~~Grr~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~~~e 142 (502)
T TIGR00887 63 GSASIGTLAGQLFFGWLADKLGRKRVYGMELIIMIIATVASGLSPGSSPKSVMATLCFWRFWLGVGIGGDYPLSAIITSE 142 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHccCcccchHHHHHHHHHHHHHHHHhhhhHHHHHHHHH
Confidence 4456778899999999999999999998776665554443333211 1111122222233334445778899999
Q ss_pred cccCcchhhHHHHHHHHHHHHHhHHHHHHHH
Q 018373 281 IYPTSARTTGFGVASSLGKVGGMVCPLVAVG 311 (357)
Q Consensus 281 lfPt~~R~~~~~~~~~~~~l~~~~~p~~~~~ 311 (357)
.+|++.|+++.++.+....++..+++.+...
T Consensus 143 ~~p~~~Rg~~~~~~~~~~~~g~~~g~~~~~~ 173 (502)
T TIGR00887 143 FATKKWRGAMMAAVFAMQGFGILAGAIVALI 173 (502)
T ss_pred hcChhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999998888887777766543
No 103
>PRK11663 regulatory protein UhpC; Provisional
Probab=99.13 E-value=5.5e-09 Score=99.62 Aligned_cols=136 Identities=13% Similarity=0.116 Sum_probs=93.9
Q ss_pred HHHhhhhhHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhhhhccccccCcch
Q 018373 208 IASLAELPGLILSAIIVDKIGRKLSMVLMFVSACIFLLPLVFHQSAVVTTVLLFGVRMCVTGTITVATIYAPEIYPTSAR 287 (357)
Q Consensus 208 i~~~~~~~~~~~~~~l~d~~GRR~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ElfPt~~R 287 (357)
...++..++.++.+++.||+|||+.+..+.++.++..+......+........+...+.....++....+.+|.||.+.|
T Consensus 66 ~~~~~~~~~~~~~G~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~r 145 (434)
T PRK11663 66 LFYITYGVSKFVSGIVSDRSNARYFMGIGLIATGIINILFGFSSSLWAFALLWVLNAFFQGWGWPVCAKLLTAWYSRTER 145 (434)
T ss_pred HHHHHHHHHHhhhhHHHhhcCCchhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHccchHHHHHHHHhCCHHHH
Confidence 44566788899999999999999999888877766655444433322211111222222223345667889999999999
Q ss_pred hhHHHHHHHHHHHHHhHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHHhhccccc
Q 018373 288 TTGFGVASSLGKVGGMVCPLVAVGLVTSCHLRLAVILFEVVFVLAIASSLLFPFET 343 (357)
Q Consensus 288 ~~~~~~~~~~~~l~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~pet 343 (357)
+++.|+.+....+++.++|.+...+.+..++...+++.++++++..+...+..||+
T Consensus 146 g~~~~~~~~~~~~g~~~~~~~~~~l~~~~gw~~~f~~~~i~~~~~~~~~~~~~~~~ 201 (434)
T PRK11663 146 GGWWAIWNTAHNVGGALIPLVVGAIALHYGWRYGMMIAGIIAIVVGLFLCWRLRDK 201 (434)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 99999999999999999998888777666666666666665555444444445554
No 104
>PRK10054 putative transporter; Provisional
Probab=99.13 E-value=4.3e-09 Score=99.13 Aligned_cols=136 Identities=14% Similarity=0.142 Sum_probs=90.0
Q ss_pred HHHhhhhhHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhhhhccccccCcch
Q 018373 208 IASLAELPGLILSAIIVDKIGRKLSMVLMFVSACIFLLPLVFHQSAVVTTVLLFGVRMCVTGTITVATIYAPEIYPTSAR 287 (357)
Q Consensus 208 i~~~~~~~~~~~~~~l~d~~GRR~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ElfPt~~R 287 (357)
+..+...++.++.|++.||+|||+.+..+.+...+....+.+.++...................+....+.+|.+|.+.|
T Consensus 51 ~~~~~~~~~~~~~G~l~Dr~g~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 130 (395)
T PRK10054 51 IALTIGVVFSLGFGILADKFDKKRYMLLAITAFASGFIAIPLVNNVTLVVLFFALINCAYSVFSTVLKAWFADNLSSTSK 130 (395)
T ss_pred HHHHHHHHHHHHHHHHHhhcCcchhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHhHH
Confidence 34566777888999999999999998877766555444333333322211111111111112234567788999999999
Q ss_pred hhHHHHHHHHHHHHHhHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHHhhcccccc
Q 018373 288 TTGFGVASSLGKVGGMVCPLVAVGLVTSCHLRLAVILFEVVFVLAIASSLLFPFETM 344 (357)
Q Consensus 288 ~~~~~~~~~~~~l~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~pet~ 344 (357)
+++.|+.+....++..++|.+...+.+ .+...++.+.+++.+++.+...+..||++
T Consensus 131 ~~~~g~~~~~~~lg~~igp~l~~~l~~-~g~~~~f~~~~~~~~i~~i~~~~~~~~~~ 186 (395)
T PRK10054 131 TKIFSLNYTMLNIGWTVGPPLGTLLVM-QSINLPFWLAAICSAFPLVFIQIWVQRSE 186 (395)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-hccCcHHHHHHHHHHHHHHHHHHHHhccc
Confidence 999999999999999999988887654 34555666666666666555555455543
No 105
>TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily. This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli.
Probab=99.12 E-value=2.4e-09 Score=103.38 Aligned_cols=139 Identities=10% Similarity=0.066 Sum_probs=97.6
Q ss_pred HHHHhhhhhHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhhhhccccccCcc
Q 018373 207 FIASLAELPGLILSAIIVDKIGRKLSMVLMFVSACIFLLPLVFHQSAVVTTVLLFGVRMCVTGTITVATIYAPEIYPTSA 286 (357)
Q Consensus 207 ~i~~~~~~~~~~~~~~l~d~~GRR~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ElfPt~~ 286 (357)
....++..++.++.+++.||+|||+.++.+.++..+........++.....+..+...+......+....+.+|.+|.+.
T Consensus 44 ~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~G~~~~~~~~~~~~~i~~~~~~~~ 123 (485)
T TIGR00711 44 TSYMLANAISIPLTGWLAKRFGTRRLFLISTFAFTLGSLLCGVAPNLELMIIFRVIQGFGGGPLIPLSFSTLLNIYPPEK 123 (485)
T ss_pred HHHHHHHHHHHHhHHHHHHHhCcHHHHHHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHhhhhhHHHHHHHHHHHHCCHHH
Confidence 34567778889999999999999999988877666555444433322222222222222223344567889999999999
Q ss_pred hhhHHHHHHHHHHHHHhHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHHhhccccccC
Q 018373 287 RTTGFGVASSLGKVGGMVCPLVAVGLVTSCHLRLAVILFEVVFVLAIASSLLFPFETMG 345 (357)
Q Consensus 287 R~~~~~~~~~~~~l~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~pet~~ 345 (357)
|+++.++......++..++|.+...+.++.++.+.+++.+.+.+++.++..+..||++.
T Consensus 124 r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~w~~~f~~~~~~~~~~~~~~~~~~~~~~~ 182 (485)
T TIGR00711 124 RGRAMAIWGLTVLVAPALGPTLGGWIIENYHWRWIFLINVPIGIIVVVVAFFILPRDKP 182 (485)
T ss_pred HHHHHHHHHHHHHHHhhhhhccHhHhccCcCceehhhhhhHHHHHHHHHHHHHcCCccc
Confidence 99999999999899999999888877776665566666666666666666666677544
No 106
>PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional
Probab=99.11 E-value=6.5e-09 Score=99.69 Aligned_cols=138 Identities=16% Similarity=0.041 Sum_probs=84.4
Q ss_pred HHHHhhhhhHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHhhh----hhHHHHHHHHHHHHHhhhhhhhhhhhccccc
Q 018373 207 FIASLAELPGLILSAIIVDKIGRKLSMVLMFVSACIFLLPLVFHQ----SAVVTTVLLFGVRMCVTGTITVATIYAPEIY 282 (357)
Q Consensus 207 ~i~~~~~~~~~~~~~~l~d~~GRR~~~~~~~~~~~i~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~Elf 282 (357)
....++..++.++.|++.||+|||+.++.+.++.++..+.+.... +.....+..+...++....++.......|.|
T Consensus 70 ~~~~i~~~~~~~~~G~l~Dr~g~k~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~gi~~g~~~~~~~~~~~~~~ 149 (452)
T PRK11273 70 SGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWW 149 (452)
T ss_pred HHHHHHHHHHHhhhhhhhhccCCchhHHHHHHHHHHHHHHHHhhhcccccHHHHHHHHHHHHHHHhccchHHHHHHHHhC
Confidence 344566788899999999999999999888776665555443321 1111111122222222223344456678999
Q ss_pred cCcchhhHHHHHHHHHHHHHh-HHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHHhhcccccc
Q 018373 283 PTSARTTGFGVASSLGKVGGM-VCPLVAVGLVTSCHLRLAVILFEVVFVLAIASSLLFPFETM 344 (357)
Q Consensus 283 Pt~~R~~~~~~~~~~~~l~~~-~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~pet~ 344 (357)
|++.|+++.|+.+....+++. .+|.....+....++...+++.++..++..++.+++.||+.
T Consensus 150 ~~~~r~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~gw~~~f~i~~~~~~~~~~l~~~~~~~~~ 212 (452)
T PRK11273 150 SQKERGGIVSVWNCAHNVGGGLPPLLFLLGMAWFNDWHAALYMPAFAAILVALFAFAMMRDTP 212 (452)
T ss_pred ChHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHccCCH
Confidence 999999999998777777754 44443222222224445566666666665566666667654
No 107
>KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]
Probab=99.11 E-value=9.6e-09 Score=97.85 Aligned_cols=262 Identities=14% Similarity=0.251 Sum_probs=142.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhcC-cchHHHHHHhhHHHHHHHHH-HhcCCCChHHHHHcCChHHHHHHHHHHHHH
Q 018373 19 GRWMVALSAFWTAGTIFEASLAWVVMTR-LNWRWLLAFSSVPSFALLLF-YGLAPESPRYLCAKARTVDAHRILEKMAFV 96 (357)
Q Consensus 19 g~~~~~~~~~~~~G~l~~~~i~~~~~~~-~~WR~~~~~~~~p~l~~~~~-~~~lpESP~wL~~~g~~~~a~~~l~~l~~~ 96 (357)
+++.+....+.++|.++...++..+-+. .||+..|.+.+..+++..+. .++--|+|+ .|.+..+.+ ++++++.
T Consensus 163 s~~~ail~~g~q~g~v~~mp~sg~lc~s~~GW~sifY~~g~~g~i~~~~w~~~~~d~P~---~h~~is~~E--l~~I~~~ 237 (466)
T KOG2532|consen 163 STFIAILTAGSQLGTIITMPVSGLLCESSLGWPSIFYVFGIVGLIWFILWFLFYSDSPS---KHPNISEKE--LKYIEKG 237 (466)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHhccCCCCchHHHHHHHHHHHHHHHHHHHhcCCcc---cCCCCCHHH--HHHHHhc
Confidence 7788888888888888877665555444 89999999988877765544 455667775 233322211 2233211
Q ss_pred cCCCCCCCcccchhhhhhhhhhhhhhcchhhhhhhhhhhhhccchhhhhhhcchhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 018373 97 NQTKLPPGILVSDKAIKENEESNLLRDTHMLSMTRKITDKLKSGFSSFFMLFSRKLIRTTLLLWVLFFANVFSYYGAVLL 176 (357)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~y~~~~~ 176 (357)
..+ ++.+++...+++.+++++. .+..++..++....++....+
T Consensus 238 k~~----------------------------------~~~~~~~~vP~~~i~ts~~---vwai~~~~f~~~~~~~~l~~y 280 (466)
T KOG2532|consen 238 KSE----------------------------------AHVKKKPPVPYKAILTSPP---VWAIWISAFGGNWGFYLLLTY 280 (466)
T ss_pred ccc----------------------------------cccCCCCCCCHHHHHcCHH---HHHHHHHHHHHHHHHHHHHHH
Confidence 000 0000112335677775433 333444444555555555555
Q ss_pred hhhhcCCCCCCCcccccCCCCCchhhHHHHHHHHhhhhhHHHHHHHHHHhhch---------hHHHHHHHHHHHHHHHHH
Q 018373 177 TSKLSSGDNKCGSKVLHADKSKDNSLYVDVFIASLAELPGLILSAIIVDKIGR---------KLSMVLMFVSACIFLLPL 247 (357)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~d~~GR---------R~~~~~~~~~~~i~~~~~ 247 (357)
.|.+.+++- ..+..+.. +.. .+-.+...+..+++|.+.||+-+ |..-.++..+.+++++.+
T Consensus 281 ~PtY~~~VL--------~f~v~~~G-~~s-alP~l~~~~~k~~~g~lsD~l~~~~ls~t~~rkifn~i~~~~~ai~l~~l 350 (466)
T KOG2532|consen 281 LPTYLKEVL--------GFDVRETG-FLS-ALPFLAMAIVKFVAGQLSDRLTFRILSETTVRKIFNTIAFGGPAVFLLVL 350 (466)
T ss_pred hhHHHHHHh--------CCChhhhh-HHH-HHHHHHHHHHHHHHHHHHHHHhhccCchHhHHHHHHhHHHHHHHHHHHee
Confidence 555432211 11122222 322 34566777888899999999855 333344555566666655
Q ss_pred Hhhh-hhH-HHHHHHHHHHHHhhhhhhhhhhhccccc-cCcchhhHHHHHHHHHHHHHhHHHHHHHHHHhhc---chhhH
Q 018373 248 VFHQ-SAV-VTTVLLFGVRMCVTGTITVATIYAPEIY-PTSARTTGFGVASSLGKVGGMVCPLVAVGLVTSC---HLRLA 321 (357)
Q Consensus 248 ~~~~-~~~-~~~~~~~~~~~~~~~~~~~~~~~~~Elf-Pt~~R~~~~~~~~~~~~l~~~~~p~~~~~l~~~~---~~~~~ 321 (357)
.+.. ... ...+++... ....+. .....+.+-.- ..+.-+..+|+++.++.+.++++|.+...+..+. .+...
T Consensus 351 ~~~~~~~~~~a~~~l~~~-~~~~g~-~~~Gf~~~~~~~apq~a~~l~g~~~~~~~~~~~~~P~~vg~~~~~~t~~eW~~V 428 (466)
T KOG2532|consen 351 AFTSDEHRLLAVILLTIA-IGLSGF-NISGFYKNHQDIAPQHAGFVMGIINFVGALAGFIAPLLVGIIVTDNTREEWRIV 428 (466)
T ss_pred eecCCCcchHHHHHHHHH-HHHccc-chhhhHhhhhhccchHHHHHHHHHHHHHHHHHHHHHHheeeEeCCCCHHHHHHH
Confidence 5432 222 222222221 111221 22222222233 5567889999999999999999999988777421 12334
Q ss_pred HHHHHHHHHHHHH
Q 018373 322 VILFEVVFVLAIA 334 (357)
Q Consensus 322 ~~~~~~~~~~~~~ 334 (357)
|++.+++.+++.+
T Consensus 429 F~i~a~i~~~~~i 441 (466)
T KOG2532|consen 429 FLIAAGILIVGNI 441 (466)
T ss_pred HHHHHHHHHHhch
Confidence 4455555555543
No 108
>TIGR00893 2A0114 d-galactonate transporter.
Probab=99.11 E-value=2.4e-09 Score=99.77 Aligned_cols=139 Identities=15% Similarity=0.132 Sum_probs=97.7
Q ss_pred HHHHhhhhhHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhhhhccccccCcc
Q 018373 207 FIASLAELPGLILSAIIVDKIGRKLSMVLMFVSACIFLLPLVFHQSAVVTTVLLFGVRMCVTGTITVATIYAPEIYPTSA 286 (357)
Q Consensus 207 ~i~~~~~~~~~~~~~~l~d~~GRR~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ElfPt~~ 286 (357)
.+..++..++.++.+++.||+|||+.+..+.++.++.........+.....+..+...+......+....+.+|.+|.+.
T Consensus 36 ~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~ 115 (399)
T TIGR00893 36 SAFSWGYVVGQFPGGWLLDRFGARKTLAVFIVIWGVFTGLQAFAGAYVSLYILRVLLGAAEAPFFPGIILIVASWFPASE 115 (399)
T ss_pred HHHHHHHHHHHHhHHHHHHhcCcceeeHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHhhhhHHHHHHHHhCCHHH
Confidence 34567778889999999999999999888777665554444333222222222222222223344567789999999999
Q ss_pred hhhHHHHHHHHHHHHHhHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHHhhccccccC
Q 018373 287 RTTGFGVASSLGKVGGMVCPLVAVGLVTSCHLRLAVILFEVVFVLAIASSLLFPFETMG 345 (357)
Q Consensus 287 R~~~~~~~~~~~~l~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~pet~~ 345 (357)
|+++.++......++..++|.+...+.+..++...+++.++..++..+..++..||++.
T Consensus 116 r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (399)
T TIGR00893 116 RATAVSIFNSAQGLGGIIGGPLVGWILIHFSWQWAFIIEGVLGIIWGVLWLKFIPDPPQ 174 (399)
T ss_pred HHHHHHHHHHhchHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHhhheecCCCC
Confidence 99999999999999999999888877666665666666666666666666666666654
No 109
>PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms. These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A.
Probab=99.11 E-value=6.2e-09 Score=95.76 Aligned_cols=136 Identities=17% Similarity=0.193 Sum_probs=94.1
Q ss_pred HHHHhhhhhHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhhhhccccccCcc
Q 018373 207 FIASLAELPGLILSAIIVDKIGRKLSMVLMFVSACIFLLPLVFHQSAVVTTVLLFGVRMCVTGTITVATIYAPEIYPTSA 286 (357)
Q Consensus 207 ~i~~~~~~~~~~~~~~l~d~~GRR~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ElfPt~~ 286 (357)
....+...++.++.+.+.||+|||+.+..+.++.++......+.++.....+..+...+......+....+.+|.+|.+.
T Consensus 39 ~~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~ 118 (352)
T PF07690_consen 39 SAFFLGSALFSPFAGYLSDRFGRRRVLIIGLLLFALGSLLLAFASNFWLLLIARFLLGIGSGFFSPASNALIADWFPPEE 118 (352)
T ss_dssp HHHHHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCTCC
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCeeeEeehhhhhhhHHHHhhhhhhHHHHhhhccccccccccccccccccccccchhhh
Confidence 34566778889999999999999998888877766663333332222222222222333333445678889999999999
Q ss_pred hhhHHHHHHHHHHHHHhHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHHhhcccc
Q 018373 287 RTTGFGVASSLGKVGGMVCPLVAVGLVTSCHLRLAVILFEVVFVLAIASSLLFPFE 342 (357)
Q Consensus 287 R~~~~~~~~~~~~l~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~pe 342 (357)
|+++.++.+....++..++|.+...+.+..++...+++.+++.+++.++..++.++
T Consensus 119 ~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~~~~~~~~~~~~~~~~~~il~~~~~~~ 174 (352)
T PF07690_consen 119 RGRAFGILSAGFSLGSILGPLLGGFLISYFGWRWAFLISAILSLIAAILFILFLPE 174 (352)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCCCHCHHCCHHHHHHHHHHHHHHHHHCCC--
T ss_pred hhhccccccchhhhhhhcccchhhhhhhccccccccccccchhhhhhhhHhhhhhh
Confidence 99999999999999999999888876655555566777777777776654444443
No 110
>TIGR00891 2A0112 putative sialic acid transporter.
Probab=99.11 E-value=1.1e-08 Score=96.16 Aligned_cols=138 Identities=18% Similarity=0.145 Sum_probs=89.0
Q ss_pred HHHHhhhhhHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhhhhccccccCcc
Q 018373 207 FIASLAELPGLILSAIIVDKIGRKLSMVLMFVSACIFLLPLVFHQSAVVTTVLLFGVRMCVTGTITVATIYAPEIYPTSA 286 (357)
Q Consensus 207 ~i~~~~~~~~~~~~~~l~d~~GRR~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ElfPt~~ 286 (357)
.+..++..++.++.|.+.||+|||+.++.+.++..+..+......+........+...+......+....+.+|.+|.+.
T Consensus 54 ~~~~~~~~~~~~~~G~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~ 133 (405)
T TIGR00891 54 SAALISRWFGALMFGLWGDRYGRRLPMVTSIVLFSAGTLACGFAPGYITMFIARLVIGIGMGGEYGSSAAYVIESWPKHL 133 (405)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhhhhhHHHHHHHHHhCChhh
Confidence 34566778889999999999999999988776655554443332222221122222222222334566788999999999
Q ss_pred hhhHHHHHHHHHHHHHhHHHHHHHHHHhhcc--hhhHHHHHHHHHHHHHHHHhhccccccC
Q 018373 287 RTTGFGVASSLGKVGGMVCPLVAVGLVTSCH--LRLAVILFEVVFVLAIASSLLFPFETMG 345 (357)
Q Consensus 287 R~~~~~~~~~~~~l~~~~~p~~~~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~pet~~ 345 (357)
|+++.++.+....++..++|.+...+.+..+ +...+++ ++...+..++.....||++.
T Consensus 134 ~~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~~~w~~~f~~-~~~~~~~~~~~~~~~~~~~~ 193 (405)
T TIGR00891 134 RNKASGLLISGYAVGAVVAAQVYSLVVPVWGDGWRALFFI-SILPIIFALWLRKNIPEAED 193 (405)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccHHHHHHH-HHHHHHHHHHHHHhCCCChh
Confidence 9999999999888999899888776665543 3333333 33333333444455677653
No 111
>PRK12307 putative sialic acid transporter; Provisional
Probab=99.11 E-value=7.4e-09 Score=98.33 Aligned_cols=137 Identities=20% Similarity=0.177 Sum_probs=88.7
Q ss_pred HHHHhhhhhHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhhhhccccccCcc
Q 018373 207 FIASLAELPGLILSAIIVDKIGRKLSMVLMFVSACIFLLPLVFHQSAVVTTVLLFGVRMCVTGTITVATIYAPEIYPTSA 286 (357)
Q Consensus 207 ~i~~~~~~~~~~~~~~l~d~~GRR~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ElfPt~~ 286 (357)
.+..++..++.++.+++.||+|||+.+..+.+..++........++.....+.-+...+.....++....+.+|.+|.+.
T Consensus 60 ~~~~~~~~l~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~g~g~~~~~~~~~~~~~~~~~~ 139 (426)
T PRK12307 60 TAAFIGRPFGGALFGLLADKFGRKPLMMWSIVAYSVGTGLSGLASGVIMLTLSRFIVGMGMAGEYACASTYAVESWPKHL 139 (426)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhCCHhH
Confidence 34566778889999999999999999988877766655444433332222222222222223345667788999999999
Q ss_pred hhhHHHHHHHHHHHHHhHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHHhhcccccc
Q 018373 287 RTTGFGVASSLGKVGGMVCPLVAVGLVTSCHLRLAVILFEVVFVLAIASSLLFPFETM 344 (357)
Q Consensus 287 R~~~~~~~~~~~~l~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~pet~ 344 (357)
|+++.++......++.+++|.+.+.+.+..++...+++ ++...+..++.....||++
T Consensus 140 r~~~~~~~~~~~~lg~~~~~~l~~~l~~~~~w~~~f~i-~~~~~~~~~~~~~~~p~~~ 196 (426)
T PRK12307 140 KSKASAFLVSGFGIGNIIAAYFMPSFAEAYGWRAAFFV-GLLPVLLVIYIRARAPESK 196 (426)
T ss_pred hhHhhhHHHHHHhHHHHHHHHHHHHHcccCCHHHHHHH-HHHHHHHHHHHHHHCCCCh
Confidence 99999999888888888888887766655555444444 2222222232333346654
No 112
>PRK03545 putative arabinose transporter; Provisional
Probab=99.10 E-value=9.6e-09 Score=96.50 Aligned_cols=135 Identities=6% Similarity=-0.015 Sum_probs=92.2
Q ss_pred HhhhhhHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhhhhccccccCcchhh
Q 018373 210 SLAELPGLILSAIIVDKIGRKLSMVLMFVSACIFLLPLVFHQSAVVTTVLLFGVRMCVTGTITVATIYAPEIYPTSARTT 289 (357)
Q Consensus 210 ~~~~~~~~~~~~~l~d~~GRR~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ElfPt~~R~~ 289 (357)
.+...++.+..+.+.||+|||+.+..+.....+........++.....+.-+...+.....++....+.+|.+|.+.|++
T Consensus 54 ~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~~~G~~~~~~~~~~~~~i~~~~~~~~r~~ 133 (390)
T PRK03545 54 AWVVALMSLPLMLLTSNVERRKLLIGLFVLFIASHVLSALAWNFTVLLISRIGIAFAHAIFWSITASLAIRVAPAGKKAQ 133 (390)
T ss_pred HHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhhhhh
Confidence 44556677888999999999999988877666554444433332222122222222212223556678899999999999
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHHhhcccccc
Q 018373 290 GFGVASSLGKVGGMVCPLVAVGLVTSCHLRLAVILFEVVFVLAIASSLLFPFETM 344 (357)
Q Consensus 290 ~~~~~~~~~~l~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~pet~ 344 (357)
++|+......++..++|.+...+.+..++...+++.++++++..+..+...||.+
T Consensus 134 ~~g~~~~~~~~g~~ig~~l~~~l~~~~gw~~~f~~~~~~~~l~~~~~~~~~~~~~ 188 (390)
T PRK03545 134 ALSLLATGTALAMVLGLPLGRVIGQYLGWRTTFLAIGGGALITLLLLIKLLPLLP 188 (390)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhCCCCC
Confidence 9999988888999999988877766666666777777777766666555566643
No 113
>PRK03699 putative transporter; Provisional
Probab=99.09 E-value=1.4e-08 Score=95.46 Aligned_cols=128 Identities=18% Similarity=0.275 Sum_probs=84.4
Q ss_pred HHHhhhhhHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhhhhccccccCcch
Q 018373 208 IASLAELPGLILSAIIVDKIGRKLSMVLMFVSACIFLLPLVFHQSAVVTTVLLFGVRMCVTGTITVATIYAPEIYPTSAR 287 (357)
Q Consensus 208 i~~~~~~~~~~~~~~l~d~~GRR~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ElfPt~~R 287 (357)
...++..++.++.+++.||+|||+.+..+..+..+........++.....+..+...++.....+....+.+|.+|.+.|
T Consensus 50 ~~~~~~~i~~~~~g~l~dr~g~r~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~G~~~g~~~~~~~~~i~~~~~~~~r 129 (394)
T PRK03699 50 FLNAGILISIFLNAWLMEIIPLKRQLIFGFALMILAVAGLMFSHSLALFSIAMFVLGVVSGITMSIGTFLITHVYEGKQR 129 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHcchHHHHHHHHHHHHHhhHhhccchhHHhhhhcccchH
Confidence 34566788899999999999999998887766655544444433322222222222222222344567788999999999
Q ss_pred hhHHHHHHHHHHHHHhHHHHHHHHHHh-hcchhhHHHHHHHHHHHHHHH
Q 018373 288 TTGFGVASSLGKVGGMVCPLVAVGLVT-SCHLRLAVILFEVVFVLAIAS 335 (357)
Q Consensus 288 ~~~~~~~~~~~~l~~~~~p~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~ 335 (357)
+.+.++.+....+++.++|.+...+.. ..++...+.+.++..++..++
T Consensus 130 ~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~gw~~~f~~~~~~~~~~~~~ 178 (394)
T PRK03699 130 GSRLLFTDSFFSMAGMIFPIIAAYLLARSIEWYWVYACIGLVYVAIFIL 178 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHH
Confidence 999999888877888888888766554 334555666666655544443
No 114
>TIGR00788 fbt folate/biopterin transporter. The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity.
Probab=99.08 E-value=7.2e-09 Score=99.68 Aligned_cols=111 Identities=12% Similarity=0.086 Sum_probs=73.8
Q ss_pred HHHHhhhhhHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHH-h----h-----hhhHHHHHHHHHHHHHhhhhhhhhhh
Q 018373 207 FIASLAELPGLILSAIIVDKIGRKLSMVLMFVSACIFLLPLV-F----H-----QSAVVTTVLLFGVRMCVTGTITVATI 276 (357)
Q Consensus 207 ~i~~~~~~~~~~~~~~l~d~~GRR~~~~~~~~~~~i~~~~~~-~----~-----~~~~~~~~~~~~~~~~~~~~~~~~~~ 276 (357)
.+.+++.+++..+.+.+.+|++.|+++.++.+...+...... . . .+............+.....+.....
T Consensus 295 ~~~~v~~i~g~~~~~~~~~~~~~r~~l~~~~~l~~~~~~~~~~l~~~~~~~~gi~~~~~~~~~~~l~~~~~g~~~~~~~~ 374 (468)
T TIGR00788 295 VVGNLGSLCGVGGYDRFLKTFPYRLLFGVTTLLYTLSSLFDLILVKRWNLAFGISDEVFVLGDSIIAEVLAQLKFMPFLV 374 (468)
T ss_pred HHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHhCceeeeeccccccCCCCeeeeeehhHHHHHHHHHHHccHHH
Confidence 345678888889999999999999999888776655443221 0 0 11101000011111111222344578
Q ss_pred hccccccCcchhhHHHHHHHHHHHHHhHHHHHHHHHHhhcc
Q 018373 277 YAPEIYPTSARTTGFGVASSLGKVGGMVCPLVAVGLVTSCH 317 (357)
Q Consensus 277 ~~~ElfPt~~R~~~~~~~~~~~~l~~~~~p~~~~~l~~~~~ 317 (357)
+..|+-|.+.+++..++.+++..++..+++.+...+.+..+
T Consensus 375 ~~~~~~p~~~egt~~al~~s~~~lg~~v~~~~gg~l~~~~g 415 (468)
T TIGR00788 375 LLARLCPSGCESSVFALLASILHLGSSVSGFLGVLLMETIG 415 (468)
T ss_pred HHHHhCCCCceehHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 89999999999999999999999999999877776666554
No 115
>PRK11102 bicyclomycin/multidrug efflux system; Provisional
Probab=99.07 E-value=4.5e-09 Score=98.04 Aligned_cols=139 Identities=13% Similarity=0.138 Sum_probs=98.1
Q ss_pred HHHHhhhhhHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhhhhccccccCcc
Q 018373 207 FIASLAELPGLILSAIIVDKIGRKLSMVLMFVSACIFLLPLVFHQSAVVTTVLLFGVRMCVTGTITVATIYAPEIYPTSA 286 (357)
Q Consensus 207 ~i~~~~~~~~~~~~~~l~d~~GRR~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ElfPt~~ 286 (357)
.+..++..++.++.+.+.||+|||+.+..+..+..+.........+.....+..+...++.....+....+.+|.+|.+.
T Consensus 33 ~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~ 112 (377)
T PRK11102 33 SAYILGFAIGQLFYGPMADSFGRKPVILGGTLVFALAAVACALAQTIDQLIYMRFLHGLAAAAASVVINALMRDMFPKEE 112 (377)
T ss_pred HHHHHHHHHHHHhhchHHhhcCChHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHH
Confidence 34556678889999999999999999988877766655544433322222222222222223334556788999999999
Q ss_pred hhhHHHHHHHHHHHHHhHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHHhhccccccC
Q 018373 287 RTTGFGVASSLGKVGGMVCPLVAVGLVTSCHLRLAVILFEVVFVLAIASSLLFPFETMG 345 (357)
Q Consensus 287 R~~~~~~~~~~~~l~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~pet~~ 345 (357)
|+++.++.+....++..++|.+...+.+..++...+++.+.+.++..++..+..||++.
T Consensus 113 ~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (377)
T PRK11102 113 FSRMMSFVTLVMTIAPLLAPIIGGWLLVWFSWHAIFWVLALAAILAAALVFFFIPETLP 171 (377)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHHhCCccCc
Confidence 99999999999999999999888777766565566677777777766666666777643
No 116
>PRK10429 melibiose:sodium symporter; Provisional
Probab=99.06 E-value=1e-07 Score=92.02 Aligned_cols=107 Identities=15% Similarity=0.130 Sum_probs=64.5
Q ss_pred HHHhhhhhHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHH---h-hhh-hHHHHHHHHHHHHHhhhhhhhhhhhcccc-
Q 018373 208 IASLAELPGLILSAIIVDKIGRKLSMVLMFVSACIFLLPLV---F-HQS-AVVTTVLLFGVRMCVTGTITVATIYAPEI- 281 (357)
Q Consensus 208 i~~~~~~~~~~~~~~l~d~~GRR~~~~~~~~~~~i~~~~~~---~-~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~El- 281 (357)
+..+..+++.++.+++.||+|||+.+..+..+..+..+.+. . ... .....+......+.....++..+.+.+|+
T Consensus 274 ~~~i~~ii~~~~~~~l~~r~gkk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~g~~~~~~~~~~~am~ad~i 353 (473)
T PRK10429 274 YAGAANLVTLILFPRLVKSLSRRILWAGASIFPVLSCGVLLLMGLAAPHNALLIVIAGILLNIGTALFWVLQVIMVADTV 353 (473)
T ss_pred HHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 34466788888899999999999998876655443322221 1 112 22211111112222233456778889999
Q ss_pred ----ccCcchhhHHH--HHHHHHHHHHhHHHHHHHHHHh
Q 018373 282 ----YPTSARTTGFG--VASSLGKVGGMVCPLVAVGLVT 314 (357)
Q Consensus 282 ----fPt~~R~~~~~--~~~~~~~l~~~~~p~~~~~l~~ 314 (357)
+++..|..|.. ....+..++..+++.+...+++
T Consensus 354 d~~e~~tG~R~~G~~~s~~~~~~K~~~al~~~i~g~~l~ 392 (473)
T PRK10429 354 DYGEYKLGIRCESIAYSVQTMVVKGGSAFAAFFIGVVLG 392 (473)
T ss_pred hhhhHhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55767665554 4455567888888877776665
No 117
>TIGR00900 2A0121 H+ Antiporter protein.
Probab=99.04 E-value=2.6e-08 Score=92.06 Aligned_cols=137 Identities=13% Similarity=0.068 Sum_probs=89.7
Q ss_pred HHHHhhhhhHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHhhh-----hhHHHHHHHHHHHHHhhhhhhhhhhhcccc
Q 018373 207 FIASLAELPGLILSAIIVDKIGRKLSMVLMFVSACIFLLPLVFHQ-----SAVVTTVLLFGVRMCVTGTITVATIYAPEI 281 (357)
Q Consensus 207 ~i~~~~~~~~~~~~~~l~d~~GRR~~~~~~~~~~~i~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~El 281 (357)
.+..+...++.++.|.+.||+|||+.++.+..+..+......... +.....+..+...+......+....+.+|.
T Consensus 41 ~~~~~~~~i~~~~~G~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~ 120 (365)
T TIGR00900 41 LAGMLPYVVLSPIAGALADRYDRKKVMIGADLIRAVLVAVLPFVALLGGLNIWQVYVLAGILAIAQAFFTPAYQAMLPDL 120 (365)
T ss_pred HHHHHHHHHHHHhhhHHHHhhchhHHHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 344566778889999999999999999887766544433322211 222211222222222223345677899999
Q ss_pred ccCcchhhHHHHHHHHHHHHHhHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHHhhc-cccc
Q 018373 282 YPTSARTTGFGVASSLGKVGGMVCPLVAVGLVTSCHLRLAVILFEVVFVLAIASSLLF-PFET 343 (357)
Q Consensus 282 fPt~~R~~~~~~~~~~~~l~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~pet 343 (357)
+|.+.|+++.|+.+....++..++|.+...+.+..++...+++.++..+++.+..+.. .||.
T Consensus 121 ~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 183 (365)
T TIGR00900 121 VPEEQLTQANSLSQAVRSLFYIVGPGIGGLMYATLGIKWAIWVDAVGFAISALLIVSVRIPEL 183 (365)
T ss_pred CCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhcccccC
Confidence 9999999999999999999999999888877766555555555555555544444333 3443
No 118
>PRK10091 MFS transport protein AraJ; Provisional
Probab=99.04 E-value=1.7e-08 Score=94.49 Aligned_cols=139 Identities=13% Similarity=0.066 Sum_probs=95.5
Q ss_pred HHHHhhhhhHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhhhhccccccCcc
Q 018373 207 FIASLAELPGLILSAIIVDKIGRKLSMVLMFVSACIFLLPLVFHQSAVVTTVLLFGVRMCVTGTITVATIYAPEIYPTSA 286 (357)
Q Consensus 207 ~i~~~~~~~~~~~~~~l~d~~GRR~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ElfPt~~ 286 (357)
....++..++.++.+++.||+|||+.+..+..+.++..+.....++.....+.-+...+......+....+.+|.+|.+.
T Consensus 45 s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~l~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~ 124 (382)
T PRK10091 45 SYYALGVVVGAPIIALFSSRYSLKHILLFLVALCVIGNAMFTLSSSYLMLAIGRLVSGFPHGAFFGVGAIVLSKIIKPGK 124 (382)
T ss_pred HHHHHHHHHHHHHHHHHHccCccHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCChHH
Confidence 34567778899999999999999999988877766655544443333222222222222222233455677899999999
Q ss_pred hhhHHHHHHHHHHHHHhHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHHhhccccccC
Q 018373 287 RTTGFGVASSLGKVGGMVCPLVAVGLVTSCHLRLAVILFEVVFVLAIASSLLFPFETMG 345 (357)
Q Consensus 287 R~~~~~~~~~~~~l~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~pet~~ 345 (357)
|+.++++......++..++|.+...+.+..++...+.+.++..++..+..++..||.+.
T Consensus 125 ~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~gwr~~f~~~~~~~~~~~~~~~~~lp~~~~ 183 (382)
T PRK10091 125 VTAAVAGMVSGMTVANLLGIPLGTYLSQEFSWRYTFLLIAVFNIAVLASIYFWVPDIRD 183 (382)
T ss_pred hhHHHHHHHHHHHHHHHHhccHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHhCCCCCc
Confidence 99999998887788888888777766665566667777777666665656666787543
No 119
>PRK14995 methyl viologen resistance protein SmvA; Provisional
Probab=99.03 E-value=3e-08 Score=96.20 Aligned_cols=137 Identities=15% Similarity=0.116 Sum_probs=92.1
Q ss_pred HhhhhhHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhhhhccccc-cCcchh
Q 018373 210 SLAELPGLILSAIIVDKIGRKLSMVLMFVSACIFLLPLVFHQSAVVTTVLLFGVRMCVTGTITVATIYAPEIY-PTSART 288 (357)
Q Consensus 210 ~~~~~~~~~~~~~l~d~~GRR~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Elf-Pt~~R~ 288 (357)
.++...+.+..|++.||+|||+.++.+..+..+..+.....++.....+.-+...+...+..+.......+.+ |.+.|+
T Consensus 51 ~l~~~~~~~~~G~l~D~~Grk~~l~~~~~~~~~~~~~~~~a~~~~~li~~r~l~G~g~~~~~~~~~~~l~~~~~~~~~r~ 130 (495)
T PRK14995 51 SLVMAGMVLPMGALGDRIGFKRLLMLGGTLFGLASLAAAFSPTASWLIATRALLAIGAAMIVPATLAGIRATFTEEKQRN 130 (495)
T ss_pred HHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 4445566788999999999999998887766655544443333222222112222221222333444555665 679999
Q ss_pred hHHHHHHHHHHHHHhHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHHhhccccccCc
Q 018373 289 TGFGVASSLGKVGGMVCPLVAVGLVTSCHLRLAVILFEVVFVLAIASSLLFPFETMGR 346 (357)
Q Consensus 289 ~~~~~~~~~~~l~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~pet~~~ 346 (357)
++.|+......++..++|.+...+.+..++.+.|++...+++++.++.+++.||.+++
T Consensus 131 ~~~g~~~~~~~~g~~~gp~lgg~l~~~~gwr~~f~i~~~~~~~~~~l~~~~l~~~~~~ 188 (495)
T PRK14995 131 MALGVWAAVGSGGAAFGPLVGGILLEHFYWGSVFLINVPIVLVVMGLTARYVPRQAGR 188 (495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccCChHHHHHHHHHHHHHHHHHHHHhCCCCCCC
Confidence 9999999999999999999998888876766677776666677666677777775443
No 120
>PRK11652 emrD multidrug resistance protein D; Provisional
Probab=99.01 E-value=3.4e-08 Score=92.83 Aligned_cols=139 Identities=14% Similarity=0.021 Sum_probs=89.4
Q ss_pred HHHHhhhhhHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhhhhccccccCcc
Q 018373 207 FIASLAELPGLILSAIIVDKIGRKLSMVLMFVSACIFLLPLVFHQSAVVTTVLLFGVRMCVTGTITVATIYAPEIYPTSA 286 (357)
Q Consensus 207 ~i~~~~~~~~~~~~~~l~d~~GRR~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ElfPt~~ 286 (357)
....+...++.++.+.++||+|||+.+..+.....+.........+.....+..+...+......+....+..|.+|.+.
T Consensus 50 ~~~~~~~~~~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 129 (394)
T PRK11652 50 AAYLLTYGLSQLFYGPLSDRVGRRPVILVGMSIFILGTLVALFAHSLTVLIAASAIQGLGTGVGGVMARTLPRDLYEGTQ 129 (394)
T ss_pred HHHHHHHHHHHHhhhhHHHhcCChHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCHHH
Confidence 34456677888999999999999999888776655554443332222211111111111111223445667889999999
Q ss_pred hhhHHHHHHHHHHHHHhHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHHhhccccccC
Q 018373 287 RTTGFGVASSLGKVGGMVCPLVAVGLVTSCHLRLAVILFEVVFVLAIASSLLFPFETMG 345 (357)
Q Consensus 287 R~~~~~~~~~~~~l~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~pet~~ 345 (357)
|+.++++.+....++..++|.+...+.+..++...+++.++..++..+...++.||++.
T Consensus 130 ~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~ 188 (394)
T PRK11652 130 LRHANSLLNMGILVSPLLAPLIGGLLTTLFGWRACYLFLLLLGAGVTFSMARWMPETRP 188 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHHHHhCCccCc
Confidence 99999988777777888888887776665555556666666555555555556677654
No 121
>TIGR01272 gluP glucose/galactose transporter. Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity.
Probab=99.01 E-value=3.4e-07 Score=83.26 Aligned_cols=114 Identities=14% Similarity=0.185 Sum_probs=74.9
Q ss_pred HHHHhhhhhHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhhhhccccccCcc
Q 018373 207 FIASLAELPGLILSAIIVDKIGRKLSMVLMFVSACIFLLPLVFHQSAVVTTVLLFGVRMCVTGTITVATIYAPEIYPTSA 286 (357)
Q Consensus 207 ~i~~~~~~~~~~~~~~l~d~~GRR~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ElfPt~~ 286 (357)
.....+.++|.++++++.||+|+|+.+..+..++.+........+.. ......+...++....++.......+.+|.+
T Consensus 185 s~~~~~~~iGr~~~~~l~~r~g~~~~l~~~~~l~~~~~~l~~~~~~~-~~~~~~~l~g~~~s~i~P~~~s~a~~~~~~~- 262 (310)
T TIGR01272 185 AYTWGGAMVGRFIGSAVMPMISQGRYLAFNAFLAVLLSIGAALTHGY-VAMWFVLALGLFNSIMFPTIFSLALNALGRH- 262 (310)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHcCCH-HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh-
Confidence 34456778999999999999999998877666655544332222221 1112222333444556777788888888875
Q ss_pred hhhHHHHHHHHHHHHHhHHHHHHHHHHhhcchhhHHH
Q 018373 287 RTTGFGVASSLGKVGGMVCPLVAVGLVTSCHLRLAVI 323 (357)
Q Consensus 287 R~~~~~~~~~~~~l~~~~~p~~~~~l~~~~~~~~~~~ 323 (357)
.+++.++ ..++.+|+.+.|.+...+.+..+...+++
T Consensus 263 ~~~asai-~~~~~~Gg~i~P~l~G~lad~~g~~~a~~ 298 (310)
T TIGR01272 263 TSQGSGI-LCLAIVGGAIVPLLQGSLADCLGIQLAFA 298 (310)
T ss_pred hhhhHHH-HHHHHhcchHHHHHHHHHHHhccchHHHH
Confidence 3456666 46788999999999888877665544444
No 122
>PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) []. The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A.
Probab=99.01 E-value=2.1e-07 Score=86.54 Aligned_cols=139 Identities=13% Similarity=0.119 Sum_probs=94.1
Q ss_pred HHHhhhhhHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhhhhccccccCcch
Q 018373 208 IASLAELPGLILSAIIVDKIGRKLSMVLMFVSACIFLLPLVFHQSAVVTTVLLFGVRMCVTGTITVATIYAPEIYPTSAR 287 (357)
Q Consensus 208 i~~~~~~~~~~~~~~l~d~~GRR~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ElfPt~~R 287 (357)
+..+.+.+...+..++++|+|-|+.+++...++.+=+......++.......-..-.+-.........-|.++.||++..
T Consensus 267 ~~v~~E~~~m~~~p~li~rig~k~~Lllag~i~~iRi~~~~~~~~~~~i~~~klLH~~e~~l~lva~fkYI~~~fd~rls 346 (412)
T PF01306_consen 267 VQVFLEALMMFFSPWLINRIGAKNLLLLAGVIMAIRIIGSGFATNPWVISLIKLLHALEFPLLLVAAFKYITAHFDKRLS 346 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHT--SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS-GGGH
T ss_pred HHHHHHHHHHHHHHHHHHhcChHhHHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhHH
Confidence 45677889999999999999999999988877766555545444443222111111111111223456689999999999
Q ss_pred hhHHHHHHHHH-HHHHhHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHHhhccccccCc
Q 018373 288 TTGFGVASSLG-KVGGMVCPLVAVGLVTSCHLRLAVILFEVVFVLAIASSLLFPFETMGR 346 (357)
Q Consensus 288 ~~~~~~~~~~~-~l~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~pet~~~ 346 (357)
+|...+..++. .++.++.+.+.+.+.++.|...+|++.+.+.+...++..+..++.+..
T Consensus 347 At~y~v~~~~~~~~~~~i~s~~~G~lyd~~G~~~tylimg~iv~~~~li~~f~l~~~~~~ 406 (412)
T PF01306_consen 347 ATLYLVGFQFAKQIGIIILSPLAGYLYDRIGFQHTYLIMGLIVLPFTLISAFTLKKDKKQ 406 (412)
T ss_dssp HHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS--SSST
T ss_pred HHHHHHHHHHHHHHHHHHHhhhHHhhHhhcCcHHHHHHHHHHHHHHHHHheeeecCCCcc
Confidence 99999987665 577888888888888887766678888888887778877776655543
No 123
>TIGR00881 2A0104 phosphoglycerate transporter family protein.
Probab=98.99 E-value=3.4e-09 Score=98.42 Aligned_cols=138 Identities=14% Similarity=0.081 Sum_probs=92.6
Q ss_pred HHHHhhhhhHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhhhhccccccCcc
Q 018373 207 FIASLAELPGLILSAIIVDKIGRKLSMVLMFVSACIFLLPLVFHQSAVVTTVLLFGVRMCVTGTITVATIYAPEIYPTSA 286 (357)
Q Consensus 207 ~i~~~~~~~~~~~~~~l~d~~GRR~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ElfPt~~ 286 (357)
.+..++..++.++.+++.||+|||+.+..+..+..+..+......+.....+..+...+......+....+.+|.+|.+.
T Consensus 37 ~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 116 (379)
T TIGR00881 37 SSFSIAYGISKFVMGSVSDRSNPRVFLPIGLILCAIVNLFFGFSTSLWVMAALWALNGIFQGMGWPPCGRTVTKWFSRSE 116 (379)
T ss_pred HHHHHHHHhhhhhhhHHHHhhCCeehhHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhccccCCchHHHHHHhcCHhh
Confidence 34567778889999999999999999988877766655544443332222222222222223345667889999999999
Q ss_pred hhhHHHHHHHHHHHHHhHHHH-HHHHHHhhcchhhHHHHHHHHHHHHHHHHhhcccccc
Q 018373 287 RTTGFGVASSLGKVGGMVCPL-VAVGLVTSCHLRLAVILFEVVFVLAIASSLLFPFETM 344 (357)
Q Consensus 287 R~~~~~~~~~~~~l~~~~~p~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~pet~ 344 (357)
|+++.++.+....+++.++|. +...+.+..++...+++.+++.++..+..+++.||++
T Consensus 117 r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (379)
T TIGR00881 117 RGTWVSFWNCSHNVGGGLLPPLVLFGIAELYSWHWVFIVPGIIAIIVSLICFLLLRDSP 175 (379)
T ss_pred heeeEeehhccchhHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHheeeCCCc
Confidence 999999999998999888884 4444444444455566666666665566666666653
No 124
>TIGR00712 glpT glycerol-3-phosphate transporter. This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar.
Probab=98.99 E-value=2e-08 Score=95.85 Aligned_cols=138 Identities=14% Similarity=0.076 Sum_probs=89.0
Q ss_pred HHHHhhhhhHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHhhh---hhHH-HHHHHHHHHHHhhhhhhhhhhhccccc
Q 018373 207 FIASLAELPGLILSAIIVDKIGRKLSMVLMFVSACIFLLPLVFHQ---SAVV-TTVLLFGVRMCVTGTITVATIYAPEIY 282 (357)
Q Consensus 207 ~i~~~~~~~~~~~~~~l~d~~GRR~~~~~~~~~~~i~~~~~~~~~---~~~~-~~~~~~~~~~~~~~~~~~~~~~~~Elf 282 (357)
.+..++..++.++.+++.||+|||+.+..+.++.++..+...... .... ..+..+...+.....++......+|.|
T Consensus 68 ~~~~~~~~~~~~~~G~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~~~g~~~~~~~~~i~~~~ 147 (438)
T TIGR00712 68 SAISIAYGFSKFIMGSVSDRSNPRVFLPAGLILSAAVMLLMGFVPWATSSIAIMFVLLFLNGWFQGMGWPPCGRTMVHWW 147 (438)
T ss_pred HHHHHHHHHhhhccchhhhccCCceehHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHhhcchHHHHHHHHHhc
Confidence 345667788899999999999999988877666555444333211 1111 111111222222223344556778999
Q ss_pred cCcchhhHHHHHHHHHHHHHhHHHHHHHHHHh-hcchhhHHHHHHHHHHHHHHHHhhcccccc
Q 018373 283 PTSARTTGFGVASSLGKVGGMVCPLVAVGLVT-SCHLRLAVILFEVVFVLAIASSLLFPFETM 344 (357)
Q Consensus 283 Pt~~R~~~~~~~~~~~~l~~~~~p~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~pet~ 344 (357)
|.+.|++++|+.+....+++.++|.+...... ..++...+++.++++++..++.+++.||++
T Consensus 148 ~~~~rg~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~w~~~f~~~~~~~~i~~~~~~~~~~~~~ 210 (438)
T TIGR00712 148 SQSERGTIVSIWNCAHNIGGGIPPLLVLLGMAWFNDWHAALYFPAICAIIVALFAFAMMRDTP 210 (438)
T ss_pred CcccchhHHHHHHHHHHhHhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhccCCH
Confidence 99999999999888888888888766554333 234455667767777776666666667654
No 125
>KOG2504 consensus Monocarboxylate transporter [Carbohydrate transport and metabolism]
Probab=98.98 E-value=7.7e-09 Score=99.66 Aligned_cols=136 Identities=18% Similarity=0.222 Sum_probs=85.3
Q ss_pred HHHHHHhhhhhHHHHHHHHHHhhch--hHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhhhhccccc
Q 018373 205 DVFIASLAELPGLILSAIIVDKIGR--KLSMVLMFVSACIFLLPLVFHQSAVVTTVLLFGVRMCVTGTITVATIYAPEIY 282 (357)
Q Consensus 205 ~~~i~~~~~~~~~~~~~~l~d~~GR--R~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Elf 282 (357)
...+.++..+++.++.|++.|+... +....++.+++++........++......+.....++.....+....+..|+.
T Consensus 338 l~Siigi~~i~gRi~~G~laD~~~~~~~~~~~~~ll~~gl~~~~~p~~~~~~~l~~~~~~fG~~~g~~~~l~~~i~~~~~ 417 (509)
T KOG2504|consen 338 LLSIIGVSDIIGRIILGLLADKPGIRALVLFLLTLLIAGLARLFLPFATTYVGLIVFSILFGFCVGSFSSLTPVILVDLV 417 (509)
T ss_pred HHHHHHHhhhhhhhhhhhhcCccccchHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 3456688899999999999999884 33444555555555433222222211111111122222223345567899999
Q ss_pred cCcchhhHHHHHHHHHHHHHhHHHHHHHHHHhhcch-hhHHHHHHHHHHHHHHHHhhccc
Q 018373 283 PTSARTTGFGVASSLGKVGGMVCPLVAVGLVTSCHL-RLAVILFEVVFVLAIASSLLFPF 341 (357)
Q Consensus 283 Pt~~R~~~~~~~~~~~~l~~~~~p~~~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~p 341 (357)
+++.=+.+.|+...+..++..++|.+..++.+..+. ...+.+.+.+.++++++.++ .|
T Consensus 418 g~~~l~~a~Gl~l~~~gi~~l~gpPiag~~~d~tg~Y~~~f~~~g~~~~~s~~~~~~-~~ 476 (509)
T KOG2504|consen 418 GLEKLSNAYGLLLLFQGIGALVGPPIAGLLYDITGNYDHAFYFCGLCFLLSAVLLLI-LR 476 (509)
T ss_pred ChhhcchHHHHHHHHhHHHHHcCcccceeeeeccCCeeeehhhcChHHHHHHHHHHH-hH
Confidence 999999999999999999999999898877776653 23344444554555444433 44
No 126
>TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator).
Probab=98.98 E-value=4.7e-08 Score=90.71 Aligned_cols=107 Identities=21% Similarity=0.288 Sum_probs=71.3
Q ss_pred HHHHhhhhhHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHhhh-hhHHHHHHHHHHHHHhhhhhhhhhhhccccccCc
Q 018373 207 FIASLAELPGLILSAIIVDKIGRKLSMVLMFVSACIFLLPLVFHQ-SAVVTTVLLFGVRMCVTGTITVATIYAPEIYPTS 285 (357)
Q Consensus 207 ~i~~~~~~~~~~~~~~l~d~~GRR~~~~~~~~~~~i~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ElfPt~ 285 (357)
.+..++..++.++.+++.||+|||+.++.+.++..+..+...... +.....+..+...+. .+.+.....+.+|.+|.+
T Consensus 44 ~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~-~~~~~~~~~~~~~~~~~~ 122 (366)
T TIGR00886 44 AVPVLAGAVLRIILGFLVDKFGPRYTTTLSLLLLAIPCLWAGLAVQSYSVLLLLRLFIGIA-GGSFASCMPWISFFFPKK 122 (366)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHh-chhhHhHHHHHHHhcCHh
Confidence 345667788899999999999999999888777666554444333 222211111111121 233445567889999999
Q ss_pred chhhHHHHHHHHHHHHHhHHHHHHHHHHh
Q 018373 286 ARTTGFGVASSLGKVGGMVCPLVAVGLVT 314 (357)
Q Consensus 286 ~R~~~~~~~~~~~~l~~~~~p~~~~~l~~ 314 (357)
.|+++.++......++..+++.+.+.+..
T Consensus 123 ~r~~~~~~~~~~~~~g~~~~~~i~~~l~~ 151 (366)
T TIGR00886 123 IQGTALGLAAGWGNMGGGVAQFVMPPIIG 151 (366)
T ss_pred hhhHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 99999999887777777666666554443
No 127
>PRK09874 drug efflux system protein MdtG; Provisional
Probab=98.96 E-value=7.8e-08 Score=90.63 Aligned_cols=135 Identities=19% Similarity=0.179 Sum_probs=90.4
Q ss_pred HHHhhhhhHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhhhhccccccCcch
Q 018373 208 IASLAELPGLILSAIIVDKIGRKLSMVLMFVSACIFLLPLVFHQSAVVTTVLLFGVRMCVTGTITVATIYAPEIYPTSAR 287 (357)
Q Consensus 208 i~~~~~~~~~~~~~~l~d~~GRR~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ElfPt~~R 287 (357)
+..+...++.++.+.+.||+|||+.+..+.....+........++.....+..+...+. .+..+....+..|.+|.+.|
T Consensus 62 ~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~-~~~~~~~~~~~~~~~~~~~~ 140 (408)
T PRK09874 62 ITFLFSAIASPFWGGLADRKGRKIMLLRSALGMGIVMVLMGLAQNIWQFLILRALLGLL-GGFVPNANALIATQVPRNKS 140 (408)
T ss_pred HHHHHHHHHHHHHHHHhhhhCcHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh-hhhHHhHHHHHHHhcCHhhh
Confidence 44566678888899999999999998877665555444333322222111111111111 22334455677899999999
Q ss_pred hhHHHHHHHHHHHHHhHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHHhhccccc
Q 018373 288 TTGFGVASSLGKVGGMVCPLVAVGLVTSCHLRLAVILFEVVFVLAIASSLLFPFET 343 (357)
Q Consensus 288 ~~~~~~~~~~~~l~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~pet 343 (357)
+.+.++.+....++..++|.+...+.+..+....+++.+++.+++.+..+++.||.
T Consensus 141 ~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (408)
T PRK09874 141 GWALGTLSTGGVSGALLGPLAGGLLADSYGLRPVFFITASVLFLCFLVTLFCIREN 196 (408)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 99999998888888889998888776665655667777777666666666666664
No 128
>TIGR00903 2A0129 major facilitator 4 family protein. This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix.
Probab=98.96 E-value=3.7e-08 Score=91.77 Aligned_cols=135 Identities=13% Similarity=-0.046 Sum_probs=88.0
Q ss_pred HHhhhhhHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhhhhccccccCcchh
Q 018373 209 ASLAELPGLILSAIIVDKIGRKLSMVLMFVSACIFLLPLVFHQSAVVTTVLLFGVRMCVTGTITVATIYAPEIYPTSART 288 (357)
Q Consensus 209 ~~~~~~~~~~~~~~l~d~~GRR~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ElfPt~~R~ 288 (357)
..++..++.+..|++.||+|||+.++.................+.....+.-+...+. .+.........+|.+|.+.|+
T Consensus 35 ~~~g~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~G~g-~~~~~~~~~~~~~~~~~~~r~ 113 (368)
T TIGR00903 35 YPAAFLALTIPSGLLLDRAFKRWFLFGSLATFAAAAGRLLDPFNYEWLLACQLLAALG-QPFLLNAFAPAASQIREERRD 113 (368)
T ss_pred HHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhH-hHHHHHHHHHHHHHcCHHHHH
Confidence 3456678888899999999999987654433322221111111111111111111111 122233455568999999999
Q ss_pred hHHHHHHHHHHHHHhHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHHhhcccccc
Q 018373 289 TGFGVASSLGKVGGMVCPLVAVGLVTSCHLRLAVILFEVVFVLAIASSLLFPFETM 344 (357)
Q Consensus 289 ~~~~~~~~~~~l~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~pet~ 344 (357)
+++++......+++.+++.+...+.+..++...+++.+++.++..++.++..||.+
T Consensus 114 ~a~~~~~~~~~lG~~l~~~~~~~l~~~~gWr~~f~~~~~l~~~~~~~~~~~lp~~p 169 (368)
T TIGR00903 114 LVISLLSFAMYLGIIFALAAGLKIYTAGGLQLLIIPIAAVAAAGIILVLAALPALP 169 (368)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHHHcCCCC
Confidence 99999999999999999988887777666666676767777777777777788864
No 129
>PRK10642 proline/glycine betaine transporter; Provisional
Probab=98.96 E-value=1.2e-07 Score=92.01 Aligned_cols=135 Identities=18% Similarity=0.052 Sum_probs=84.7
Q ss_pred HHhhhhhHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHhhhhhH----H----HHHHHHHHHHHhhhhhhhhhhhccc
Q 018373 209 ASLAELPGLILSAIIVDKIGRKLSMVLMFVSACIFLLPLVFHQSAV----V----TTVLLFGVRMCVTGTITVATIYAPE 280 (357)
Q Consensus 209 ~~~~~~~~~~~~~~l~d~~GRR~~~~~~~~~~~i~~~~~~~~~~~~----~----~~~~~~~~~~~~~~~~~~~~~~~~E 280 (357)
..++..+|.++.|++.||+|||+.+..+.++.++..+...+..+.. + ....-+...+...+.++....+.+|
T Consensus 66 ~~l~~~ig~~~~G~l~Dr~Grr~~l~~~~~l~~i~~~~~a~~~~~~~~g~~a~~~l~~~R~l~G~g~g~~~~~~~~~~~e 145 (490)
T PRK10642 66 PFLIRPLGGLFFGMLGDKYGRQKILAITIVIMSISTFCIGLIPSYATIGIWAPILLLLCKMAQGFSVGGEYTGASIFVAE 145 (490)
T ss_pred HHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhHhHhhHHHHHHHHHH
Confidence 3466788999999999999999999998887777666555422211 1 1111122223333445677889999
Q ss_pred cccCcchhhHHHHHHHHHHHHHhHHHHHHHHHHh--------hcchhhHHHHHHHHHHHHHHHHhhcccccc
Q 018373 281 IYPTSARTTGFGVASSLGKVGGMVCPLVAVGLVT--------SCHLRLAVILFEVVFVLAIASSLLFPFETM 344 (357)
Q Consensus 281 lfPt~~R~~~~~~~~~~~~l~~~~~p~~~~~l~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~pet~ 344 (357)
.+|.+.|++..++......+|..+++.+...+.. ..++...+++.+...++ .++....+||+.
T Consensus 146 ~~p~~~Rg~~~~~~~~~~~~G~~lg~~~~~~~~~~~~~~~~~~~gWR~~f~i~~~~~l~-~~~~~~~~~esp 216 (490)
T PRK10642 146 YSPDRKRGFMGSWLDFGSIAGFVLGAGVVVLISTIVGEANFLDWGWRIPFFIALPLGII-GLYLRHALEETP 216 (490)
T ss_pred hCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHhcCccHHHHHHHHHHHHHH-HHHHHHcCCCCh
Confidence 9999999999998876666666565544332221 23444555554433333 333445678874
No 130
>PRK11646 multidrug resistance protein MdtH; Provisional
Probab=98.95 E-value=7.6e-08 Score=90.78 Aligned_cols=133 Identities=16% Similarity=0.078 Sum_probs=88.6
Q ss_pred HhhhhhHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhhhhccccccCcchhh
Q 018373 210 SLAELPGLILSAIIVDKIGRKLSMVLMFVSACIFLLPLVFHQSAVVTTVLLFGVRMCVTGTITVATIYAPEIYPTSARTT 289 (357)
Q Consensus 210 ~~~~~~~~~~~~~l~d~~GRR~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ElfPt~~R~~ 289 (357)
.+...+..++.|.+.||+|||+.+..+.+...+........++.+...+..+...+......+....+.+|.+|.+.|++
T Consensus 56 ~l~~~~~~~~~G~l~dr~g~k~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~ 135 (400)
T PRK11646 56 QFIQQGLGIFGGAIADRFGAKPMIVTGMLMRAAGFATMAIAHEPWLLWLSCILSGLGGTLFDPPRTALVIKLIRPHQRGR 135 (400)
T ss_pred HHHHHHHHhhhhHHHHHhCchHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHH
Confidence 44455567888999999999999988877766655554443333222121111121111223445677899999999999
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHHhhccccc
Q 018373 290 GFGVASSLGKVGGMVCPLVAVGLVTSCHLRLAVILFEVVFVLAIASSLLFPFET 343 (357)
Q Consensus 290 ~~~~~~~~~~l~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~pet 343 (357)
+.|+.+....++..++|.+...+. ..++...+++.+.+.+++.++..++.||.
T Consensus 136 a~~~~~~~~~~g~~ig~~l~g~l~-~~g~~~~f~~~~~~~~~~~i~~~~~~~~~ 188 (400)
T PRK11646 136 FFSLLMMQDSAGAVIGALLGSWLL-QYDFRLVCATGAVLFVLAAAFNAWLLPAY 188 (400)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-HhhHHHHHHHHHHHHHHHHHHHHHhCCcc
Confidence 999999999999999998888776 44555556666666555555544555664
No 131
>TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter. This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot.
Probab=98.94 E-value=1.3e-06 Score=83.42 Aligned_cols=138 Identities=11% Similarity=-0.054 Sum_probs=79.1
Q ss_pred HHHhhhhhHHHHHHHHHHhhch-hHHHHHHHHHHHHHHHHHHhhhh------h---------------HHHHHHHHHHHH
Q 018373 208 IASLAELPGLILSAIIVDKIGR-KLSMVLMFVSACIFLLPLVFHQS------A---------------VVTTVLLFGVRM 265 (357)
Q Consensus 208 i~~~~~~~~~~~~~~l~d~~GR-R~~~~~~~~~~~i~~~~~~~~~~------~---------------~~~~~~~~~~~~ 265 (357)
..++...+.+++-..+++|+|+ |+....+.++.++++....+.++ . ..........++
T Consensus 313 ~~s~~~~i~s~~l~~l~~~~g~~k~~~~~s~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Gi 392 (477)
T TIGR01301 313 LNSVVLGITSIGMEKLCRGWGAGKRLWGIVNIILAICLAATVLVTYVAKNSRYYDGDGESLPPPTGIKASALIVFAILGI 392 (477)
T ss_pred HHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHhhhhccccccccccccCcchhhHHHHHHHHHHhhH
Confidence 3344445556667788899984 67767776666555554432111 0 111111222222
Q ss_pred HhhhhhhhhhhhccccccCcch--hhHHHHHHHHHHHHHhHHHHHHHHHHhhcc--hhhHHHHHHHHHHHHHHHHhhccc
Q 018373 266 CVTGTITVATIYAPEIYPTSAR--TTGFGVASSLGKVGGMVCPLVAVGLVTSCH--LRLAVILFEVVFVLAIASSLLFPF 341 (357)
Q Consensus 266 ~~~~~~~~~~~~~~ElfPt~~R--~~~~~~~~~~~~l~~~~~p~~~~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~p 341 (357)
.....++++|++.+|.-|.+-| +.-+|+-|.+--+.-+++....+.+.+..+ ....+.+-++..+++++.+++..|
T Consensus 393 ~~A~~~siPfal~s~~~~~~~~~~G~~mgilN~~I~lpQii~sl~~g~~~~~~g~~~~~~~~~~gv~~~~aa~~~~~~~~ 472 (477)
T TIGR01301 393 PLAITYSIPFALASIRSSNLGAGQGLSMGVLNLAIVIPQIIVSLGSGPWDQLFGGGNLPAFVVGAVAAFVSGLLALILLP 472 (477)
T ss_pred HHHHHHHHhHHHHHHHccccCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHcCCCCeeHHHHHHHHHHHHHHHHHHhCC
Confidence 2233457899999999996555 667777776655544444433333333222 223344446666788888889899
Q ss_pred cccC
Q 018373 342 ETMG 345 (357)
Q Consensus 342 et~~ 345 (357)
.++.
T Consensus 473 ~~~~ 476 (477)
T TIGR01301 473 RPRV 476 (477)
T ss_pred CCCC
Confidence 8764
No 132
>PRK11043 putative transporter; Provisional
Probab=98.93 E-value=1.3e-07 Score=89.01 Aligned_cols=137 Identities=17% Similarity=0.153 Sum_probs=89.2
Q ss_pred HHHHhhhhhHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhhhhccccccCcc
Q 018373 207 FIASLAELPGLILSAIIVDKIGRKLSMVLMFVSACIFLLPLVFHQSAVVTTVLLFGVRMCVTGTITVATIYAPEIYPTSA 286 (357)
Q Consensus 207 ~i~~~~~~~~~~~~~~l~d~~GRR~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ElfPt~~ 286 (357)
.+..++..++.++.+++.||+|||+.+..+.+...+.........+.....+..+...+...........+.+|.+|.+.
T Consensus 48 s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~ 127 (401)
T PRK11043 48 SLFLAGFALGQLLWGPLSDRYGRKPVLLAGLSLFALGSLGMLWVESAAQLLVLRFVQAVGVCSAAVIWQALVIDRYPAQK 127 (401)
T ss_pred HHHHHHHHHHHHhhhhHHhhcCCcHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCcHH
Confidence 34456678889999999999999999987776655544433332222111111111111111222344567899999999
Q ss_pred hhhHHHHHHHHHHHHHhHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHHhhccccc
Q 018373 287 RTTGFGVASSLGKVGGMVCPLVAVGLVTSCHLRLAVILFEVVFVLAIASSLLFPFET 343 (357)
Q Consensus 287 R~~~~~~~~~~~~l~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~pet 343 (357)
|....+.......+++.++|.+...+.+..++...+++.+++.++..+..++..|+.
T Consensus 128 ~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 184 (401)
T PRK11043 128 ANRVFATIMPLVALSPALAPLLGAWLLNHFGWQAIFATLFAITLLLILPTLRLKPSK 184 (401)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHcCCCC
Confidence 999888888888888888998888777766665666666666666655555554443
No 133
>COG2270 Permeases of the major facilitator superfamily [General function prediction only]
Probab=98.93 E-value=3.5e-07 Score=83.83 Aligned_cols=148 Identities=18% Similarity=0.218 Sum_probs=100.5
Q ss_pred hhhHHHHHHHHhhhhhHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhhhhcc
Q 018373 200 NSLYVDVFIASLAELPGLILSAIIVDKIGRKLSMVLMFVSACIFLLPLVFHQSAVVTTVLLFGVRMCVTGTITVATIYAP 279 (357)
Q Consensus 200 ~~~~~~~~i~~~~~~~~~~~~~~l~d~~GRR~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 279 (357)
.+.....+..++.+++|+++.+++.||+|-|+++..+.++..+..+...+........+.....+++..+..+..-.|.+
T Consensus 288 ~~lll~g~~~~vvA~lg~ii~g~Ld~rfg~k~vl~~~lvi~~~~~~~~~~~~~~~~f~i~gll~g~s~G~~qA~SRSy~~ 367 (438)
T COG2270 288 TELLLIGIALSVVAALGAIIAGFLDERFGSKPVLMIGLVILSIAALYLIFLEGELDFWILGLLVGTSLGGAQASSRSYLA 367 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCceeehHHHHHHHHHHHHHHHccccHHHHHHHHHHHHhcchHHHHHHHHHH
Confidence 34444456678899999999999999999999888777665544443333222221112223334455566778889999
Q ss_pred ccccCcchhhHHHHHHHHHHHHHhHHHHHHHHHHhhcchh-hHHHHHHHHHHHHHHHHhhccccccCcch
Q 018373 280 EIYPTSARTTGFGVASSLGKVGGMVCPLVAVGLVTSCHLR-LAVILFEVVFVLAIASSLLFPFETMGREL 348 (357)
Q Consensus 280 ElfPt~~R~~~~~~~~~~~~l~~~~~p~~~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~pet~~~~l 348 (357)
++.|...-+.-.|+-+..+|..++.+|++...+.+..+.. ..+.....+..++ +..+...|+-+.++.
T Consensus 368 ~lvp~~k~~~fFglyaltgra~S~~gp~lv~v~t~iTg~~r~g~~~i~vll~iG-l~~L~~v~~~~~~~~ 436 (438)
T COG2270 368 RLVPKGKEGRFFGLYALTGRAASFLGPFLVAVITQITGSSRAGVLSIIVLLLIG-LLLLLRVKVPGRREA 436 (438)
T ss_pred HhCCCccccceeehhhhhhhHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHhh-HhhEEeecCCCCccc
Confidence 9999999999999999999999999999998888776643 2233333333334 444455555544443
No 134
>PRK15034 nitrate/nitrite transport protein NarU; Provisional
Probab=98.93 E-value=2.9e-07 Score=87.43 Aligned_cols=148 Identities=14% Similarity=0.111 Sum_probs=91.0
Q ss_pred HHHHhhhhhHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHhh-----hhhHHHHHHHHHHHHHhhhhhhhhhhhcccc
Q 018373 207 FIASLAELPGLILSAIIVDKIGRKLSMVLMFVSACIFLLPLVFH-----QSAVVTTVLLFGVRMCVTGTITVATIYAPEI 281 (357)
Q Consensus 207 ~i~~~~~~~~~~~~~~l~d~~GRR~~~~~~~~~~~i~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~El 281 (357)
.+..+...+..+..|.+.||+|.|+.+..+....++..+...+. ++.....+..+...+. .+.++.....+++.
T Consensus 77 ai~~l~~al~rip~G~l~Dr~G~R~v~~~~~ll~~i~~~~~~~a~~~~~~s~~~lli~r~l~Gig-g~~f~~~~~~vs~w 155 (462)
T PRK15034 77 ALPSVSGALLRVPYSFMVPIFGGRRWTVFSTAILIIPCVWLGIAVQNPNTPFGIFIVIALLCGFA-GANFASSMGNISFF 155 (462)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHcccCCCHHHHHHHHHHHHHH-HHhHHHHHHHHHHH
Confidence 33455556677778999999999999888877766555544432 1111111222222222 33456677789999
Q ss_pred ccCcchhhHHHHHHHHHHHHHhHHHHHHHHHH-----hhc-------------chhhHHHHHHHHHHHHHHHHhhccccc
Q 018373 282 YPTSARTTGFGVASSLGKVGGMVCPLVAVGLV-----TSC-------------HLRLAVILFEVVFVLAIASSLLFPFET 343 (357)
Q Consensus 282 fPt~~R~~~~~~~~~~~~l~~~~~p~~~~~l~-----~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~pet 343 (357)
||.+.|+++.|+....+.++..+.+.+.+.+. +.. +.....+++....+++.++.++++++.
T Consensus 156 fp~~~rG~A~Gi~~g~G~~G~~l~~~l~p~~i~~~l~~~~G~~~~~~~~g~~~~~~~~~~~~~~~~iv~~i~~~~~~~~~ 235 (462)
T PRK15034 156 FPKAKQGSALGINGGLGNLGVSVMQLVAPLVIFVPVFAFLGVNGVPQADGSVMSLANAAWIWVPLLAIATIAAWSGMNDI 235 (462)
T ss_pred CCHhHhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhccccccccccchHHHHHHHHHHHHHHHHHHHHHHHhCCCc
Confidence 99999999999998777777766665554432 211 122334566776667766777666654
Q ss_pred c--CcchhhhHhhh
Q 018373 344 M--GRELKDTVDAI 355 (357)
Q Consensus 344 ~--~~~l~e~~~~~ 355 (357)
+ ..++.|.++-+
T Consensus 236 ~~~~~~~~~~~~vl 249 (462)
T PRK15034 236 ASSRASIADQLPVL 249 (462)
T ss_pred cccccCHHHHHHHh
Confidence 3 33455554443
No 135
>PRK15075 citrate-proton symporter; Provisional
Probab=98.93 E-value=1.1e-07 Score=90.69 Aligned_cols=98 Identities=13% Similarity=0.131 Sum_probs=63.8
Q ss_pred hhhHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHhhhhhHH--------HHHHHHHHHHHhhhhhhhhhhhccccccC
Q 018373 213 ELPGLILSAIIVDKIGRKLSMVLMFVSACIFLLPLVFHQSAVV--------TTVLLFGVRMCVTGTITVATIYAPEIYPT 284 (357)
Q Consensus 213 ~~~~~~~~~~l~d~~GRR~~~~~~~~~~~i~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~ElfPt 284 (357)
..++.++.+++.||+|||+.++.+....++......+..+... ..+.-+...+.....++....+.+|.+|+
T Consensus 69 ~~ig~~~~G~l~Dr~Grr~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~~~e~~p~ 148 (434)
T PRK15075 69 RPLGAIVLGAYIDRVGRRKGLIVTLSIMASGTLLIAFVPGYATIGLAAPLLVLLGRLLQGFSAGVELGGVSVYLAEIATP 148 (434)
T ss_pred hhhHHHHHHHHhhhhchHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHhhccccccHHHHHHHHHhhCCc
Confidence 3567889999999999999998887766555544443222110 01111111112122345566899999999
Q ss_pred cchhhHHHHHHHHHHHHHhHHHHHHH
Q 018373 285 SARTTGFGVASSLGKVGGMVCPLVAV 310 (357)
Q Consensus 285 ~~R~~~~~~~~~~~~l~~~~~p~~~~ 310 (357)
+.|++++++.....+++..+++.+..
T Consensus 149 ~~rg~~~~~~~~~~~~g~~~g~~~g~ 174 (434)
T PRK15075 149 GRKGFYTSWQSASQQVAVVFAALLGY 174 (434)
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999988877776666555444
No 136
>PF13347 MFS_2: MFS/sugar transport protein
Probab=98.92 E-value=1.9e-07 Score=88.84 Aligned_cols=108 Identities=17% Similarity=0.153 Sum_probs=73.4
Q ss_pred HHHhhhhhHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHhh--hhhHHHHHHHHHHHHHhhhhhhhhhhhccccccC-
Q 018373 208 IASLAELPGLILSAIIVDKIGRKLSMVLMFVSACIFLLPLVFH--QSAVVTTVLLFGVRMCVTGTITVATIYAPEIYPT- 284 (357)
Q Consensus 208 i~~~~~~~~~~~~~~l~d~~GRR~~~~~~~~~~~i~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ElfPt- 284 (357)
+..+..+++.++.+++.||+|||+.+..+..+.++....+... .+.+...+......+.....+..++.+.+|+.+.
T Consensus 268 ~~~~~~~v~~~~~~~l~~r~gk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~gi~~~~~~~~~~a~~ad~id~~ 347 (428)
T PF13347_consen 268 IFFVASIVGSPLWGRLSKRFGKKKVYIIGLLLAALGFLLLFFLGPGSPWLVLILFILAGIGYGAFFVIPWAMLADVIDYD 347 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHccceeehhhhHHHHHHHHHHHHHHHhhhHHHHHHHHHHhHhhhcccccccccccccchhhH
Confidence 4567778888999999999999999988887776665554442 2333333333333333344557889999999883
Q ss_pred ------cchhhHHHHHHHHHHHHHhHHHHHHHHHHhh
Q 018373 285 ------SARTTGFGVASSLGKVGGMVCPLVAVGLVTS 315 (357)
Q Consensus 285 ------~~R~~~~~~~~~~~~l~~~~~p~~~~~l~~~ 315 (357)
+..++-.|+-+....++..+++.+...+++.
T Consensus 348 e~~tg~r~~g~~~s~~~~~~k~~~~la~~i~g~~l~~ 384 (428)
T PF13347_consen 348 EWKTGRRREGMYFSVNSFFIKIGQGLAGAIVGLLLAL 384 (428)
T ss_pred HHhcCCCchHHHHHhhhhhhHHHHHHHHHHHHHHHHH
Confidence 3446666776777778877777776655543
No 137
>TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial. The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists.
Probab=98.92 E-value=7.4e-08 Score=92.90 Aligned_cols=168 Identities=16% Similarity=0.096 Sum_probs=101.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhcCCCCCCCcccccCCCCCchhhHHHHHHHHhhhhhHHHHHHHHHHh-hchhHHHHH
Q 018373 157 LLLWVLFFANVFSYYGAVLLTSKLSSGDNKCGSKVLHADKSKDNSLYVDVFIASLAELPGLILSAIIVDK-IGRKLSMVL 235 (357)
Q Consensus 157 ~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~d~-~GRR~~~~~ 235 (357)
..++...+...+.||+..-+.+.+..+.. +. ..+....-...........++.+++|++.|| +|||+.+..
T Consensus 13 ~~l~~~~~~~~~~~~~~~~~L~~yl~~~~-----~l---g~s~~~ag~~~~~~~~~~~~~~~~~G~laDr~~G~~~~l~~ 84 (475)
T TIGR00924 13 FTLFFVELWERFSYYGMQGILAVYLVQQA-----GL---GFSQEQAFIIFGAYSALVYLLTSVGWWFGDRVWGTKKTMVL 84 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCC-----CC---CCCHHHHHHHHHHHHHHHHHHHhhHHHHHHhhcchHHHHHH
Confidence 33444555667778887666654432110 00 1111111122234456678889999999999 899999998
Q ss_pred HHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhhhhccccccCcc---hhhHHHHHHHHHHHHHhHHHHHHHHH
Q 018373 236 MFVSACIFLLPLVFHQSAVVTTVLLFGVRMCVTGTITVATIYAPEIYPTSA---RTTGFGVASSLGKVGGMVCPLVAVGL 312 (357)
Q Consensus 236 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ElfPt~~---R~~~~~~~~~~~~l~~~~~p~~~~~l 312 (357)
+.++.++....+....+............+......+....+.+|.+|.+. |+++.++.+...++++.++|.+..++
T Consensus 85 ~~~~~~~g~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~a~~~~~~~~~~r~~~~~~~~~~~niG~~ig~~l~g~l 164 (475)
T TIGR00924 85 GGIVLMLGHFMLAMSIYPDLIFYGLGTIAVGSGLFKANPSSMVGKLYERGDMPRRDGGFTLFYMSINIGSFISPLLAGVI 164 (475)
T ss_pred HHHHHHHHHHHHHhcccHhHHHHHHHHHHhccccccCCHHHHHHHhcCCCCcccccceehhHHHHHHHHHHHHHHHHHHH
Confidence 887766655444443222211111111122212223456778899999864 89999999999999999999998887
Q ss_pred HhhcchhhHHHHHHHHHHHH
Q 018373 313 VTSCHLRLAVILFEVVFVLA 332 (357)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~~~ 332 (357)
.+..++...+.+.++..+++
T Consensus 165 ~~~~g~~~~f~~~~~~~~~~ 184 (475)
T TIGR00924 165 AENYGYHVGFNLAAVGMVIG 184 (475)
T ss_pred HHhcChHHHHHHHHHHHHHH
Confidence 76655555555544443444
No 138
>cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3
Probab=98.92 E-value=6.1e-08 Score=88.83 Aligned_cols=130 Identities=21% Similarity=0.215 Sum_probs=90.3
Q ss_pred HHHHhhhhhHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhhhhccccccCcc
Q 018373 207 FIASLAELPGLILSAIIVDKIGRKLSMVLMFVSACIFLLPLVFHQSAVVTTVLLFGVRMCVTGTITVATIYAPEIYPTSA 286 (357)
Q Consensus 207 ~i~~~~~~~~~~~~~~l~d~~GRR~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ElfPt~~ 286 (357)
....+...++.++.+.+.||+|||+.+..+..+..+........++........+...+......+....+.+|.+|.+.
T Consensus 41 ~~~~~~~~~~~~~~g~~~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~ 120 (352)
T cd06174 41 SAFSLGYALGSLLAGYLSDRFGRRRVLLLGLLLFALGSLLLAFASSLWLLLVGRFLLGLGGGALYPAAAALIAEWFPPKE 120 (352)
T ss_pred HHHHHHHHHHHHhHHHHHHHhCCchhhHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHcccccccHhHHHHHHHhCCccc
Confidence 44567778889999999999999999888877776665554443322222222222222222334667889999999999
Q ss_pred hhhHHHHHHHHHHHHHhHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHH
Q 018373 287 RTTGFGVASSLGKVGGMVCPLVAVGLVTSCHLRLAVILFEVVFVLAIASS 336 (357)
Q Consensus 287 R~~~~~~~~~~~~l~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 336 (357)
|+++.++.+....++..++|.+...+.+..+....+++.+...+++.+..
T Consensus 121 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (352)
T cd06174 121 RGRALGLFSAGFGLGALLGPLLGGLLAESLGWRWLFLILAILGLLLALLL 170 (352)
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999888877765544555555555555554443
No 139
>TIGR00898 2A0119 cation transport protein.
Probab=98.91 E-value=4.3e-08 Score=95.34 Aligned_cols=134 Identities=20% Similarity=0.174 Sum_probs=89.9
Q ss_pred HHHHhhhhhHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhhhhccccccCcc
Q 018373 207 FIASLAELPGLILSAIIVDKIGRKLSMVLMFVSACIFLLPLVFHQSAVVTTVLLFGVRMCVTGTITVATIYAPEIYPTSA 286 (357)
Q Consensus 207 ~i~~~~~~~~~~~~~~l~d~~GRR~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ElfPt~~ 286 (357)
.+..++.+++.++.|++.||+|||+.++.+.++..+..+...+..+.....+..+...+...+..+....+.+|.+|.+.
T Consensus 134 s~~~~g~~~g~~~~g~l~Dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~~~e~~~~~~ 213 (505)
T TIGR00898 134 SCFFVGVLLGSFVFGYLSDRFGRKKVLLLSTLVTAVSGVLTAFSPNYTVFLVFRLLVGMGIGGIWVQAVVLNTEFLPKKQ 213 (505)
T ss_pred HHHHHHHHHHHHhHHHhhhhccchHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhhccchHHHHHHHhheecChhh
Confidence 34567778899999999999999999988877766665544443332222222233333333446778899999999999
Q ss_pred hhhHHHHHHHHHHHHHhHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHHhhcccccc
Q 018373 287 RTTGFGVASSLGKVGGMVCPLVAVGLVTSCHLRLAVILFEVVFVLAIASSLLFPFETM 344 (357)
Q Consensus 287 R~~~~~~~~~~~~l~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~pet~ 344 (357)
|+.+.++......++.+++|.+...+. . +...+++.++..++..+.. ++.||+.
T Consensus 214 r~~~~~~~~~~~~~g~~~~~~~~~~~~-~--wr~~~~~~~i~~~~~~~~~-~~~~esp 267 (505)
T TIGR00898 214 RAIVGTLIQVFFSLGLVLLPLVAYFIP-D--WRWLQLAVSLPTFLFFLLS-WFVPESP 267 (505)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhh-H--HHHHHHHHHHHHHHHHHHH-HhcCCCh
Confidence 999999987766777777776654332 2 3445556666555555544 5568863
No 140
>TIGR00890 2A0111 Oxalate/Formate Antiporter.
Probab=98.89 E-value=4.2e-08 Score=90.97 Aligned_cols=134 Identities=13% Similarity=0.087 Sum_probs=83.4
Q ss_pred HHHHhhhhhHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhhhhccccccCcc
Q 018373 207 FIASLAELPGLILSAIIVDKIGRKLSMVLMFVSACIFLLPLVFHQSAVVTTVLLFGVRMCVTGTITVATIYAPEIYPTSA 286 (357)
Q Consensus 207 ~i~~~~~~~~~~~~~~l~d~~GRR~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ElfPt~~ 286 (357)
.+..++..++.++.|.+.||+|||+.+..+.++..+..+......+.....+......+.....++.......|.+| +.
T Consensus 45 s~~~~~~~~~~~~~G~l~d~~G~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~-~~ 123 (377)
T TIGR00890 45 TLLLIGLAMSMPVGGLLADKFGPRAVAMLGGILYGLGFTFYAIADSLAALYLTYGLASAGVGIAYGIALNTAVKWFP-DK 123 (377)
T ss_pred HHHHHHHHHHhhhhHHHHHHcCccchhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhHHHHHHHHcC-cc
Confidence 44566778889999999999999999988777666555444433322221111112222222223344556778888 46
Q ss_pred hhhHHHHHHHHHHHHHhHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHHhhccc
Q 018373 287 RTTGFGVASSLGKVGGMVCPLVAVGLVTSCHLRLAVILFEVVFVLAIASSLLFPF 341 (357)
Q Consensus 287 R~~~~~~~~~~~~l~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~p 341 (357)
|+++.++......++..+++.+...+.+..++...+++.++..++..+..+++.+
T Consensus 124 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~ 178 (377)
T TIGR00890 124 RGLASGIIIGGYGLGSFILSPLITSVINLEGVPAAFIYMGIIFLLVIVLGAFLIG 178 (377)
T ss_pred cHHHHHHHHHhcchhHhHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHhee
Confidence 9999999888777777665555555555445555666667666666555555543
No 141
>TIGR00879 SP MFS transporter, sugar porter (SP) family. This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083)
Probab=98.89 E-value=3.1e-08 Score=94.84 Aligned_cols=137 Identities=18% Similarity=0.138 Sum_probs=86.5
Q ss_pred HHHHhhhhhHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHh-hhhhH--HHHHHHHHHHHHhhhhhhhhhhhcccccc
Q 018373 207 FIASLAELPGLILSAIIVDKIGRKLSMVLMFVSACIFLLPLVF-HQSAV--VTTVLLFGVRMCVTGTITVATIYAPEIYP 283 (357)
Q Consensus 207 ~i~~~~~~~~~~~~~~l~d~~GRR~~~~~~~~~~~i~~~~~~~-~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~ElfP 283 (357)
.+..++..++.++.+++.||+|||+.++.+.++..+....... ..... ...+..+...+......+....+.+|.+|
T Consensus 78 ~~~~~~~~i~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~ 157 (481)
T TIGR00879 78 SIFLVGGFIGALFAGWLSDRFGRKKSLLIIALLFVIGAILMGLAAFALSVEMLIVGRVLLGIGVGIASALVPMYLSEIAP 157 (481)
T ss_pred HHHHHHHHHHHHHhhHhhhhhhhHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHhHHHHHHHccCC
Confidence 3456777889999999999999999998777665554433322 11111 11112222222223334567889999999
Q ss_pred CcchhhHHHHHHHHHHHHHhHHHHHH---HHHHhhcchhhHHHHHHHHHHHHHHHHhhcccccc
Q 018373 284 TSARTTGFGVASSLGKVGGMVCPLVA---VGLVTSCHLRLAVILFEVVFVLAIASSLLFPFETM 344 (357)
Q Consensus 284 t~~R~~~~~~~~~~~~l~~~~~p~~~---~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~pet~ 344 (357)
.+.|+++.++.+....++..++|.+. ....+..++...+++.+...++ .++..++.||+.
T Consensus 158 ~~~r~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~w~~~f~~~~~~~~~-~~~~~~~l~~~~ 220 (481)
T TIGR00879 158 KALRGALTSLYQLAITFGILVAYGFGSGKVSLNNTLGWRIPLGLQLIPAGL-LFLGLFFLPESP 220 (481)
T ss_pred hhhhhhhhhHHHHHHHHHHHHHHHHHHHhhcCCCCccHHHHHHHHHHHHHH-HHHHHhcCCCCh
Confidence 99999999999988889988888776 3222233344445553333333 344445567864
No 142
>KOG0255 consensus Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily) [General function prediction only]
Probab=98.89 E-value=3.5e-08 Score=96.35 Aligned_cols=135 Identities=19% Similarity=0.220 Sum_probs=101.1
Q ss_pred HHHHhhhhhHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhhhhccccccCcc
Q 018373 207 FIASLAELPGLILSAIIVDKIGRKLSMVLMFVSACIFLLPLVFHQSAVVTTVLLFGVRMCVTGTITVATIYAPEIYPTSA 286 (357)
Q Consensus 207 ~i~~~~~~~~~~~~~~l~d~~GRR~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ElfPt~~ 286 (357)
.+..++..+|+++.|.+.||+|||+.++++.++..++.+...+..+-....++=+..+++..+...+.+.+.+|+++++.
T Consensus 125 s~~~~G~~vG~~i~g~lsD~~GRk~~~~~~~~~~~i~~~~~a~a~~~~~~~~~Rfl~G~~~~~~~~~~~~~~~E~~~~~~ 204 (521)
T KOG0255|consen 125 SLFFLGVLVGSLIFGPLSDRFGRKPVLLVSLLLFIIFGILTAFAPNYWMFLIFRFLSGFFGSGPLTVGFGLVAEIVSPKQ 204 (521)
T ss_pred HHHHHHHHHHHhhheehHhhcccHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhccchhHHhHhhheeecCcch
Confidence 44567778999999999999999999999999888877666665554444455555566666777889999999999999
Q ss_pred hhhHHHHHHHHHHHHHhHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHHhhccccccC
Q 018373 287 RTTGFGVASSLGKVGGMVCPLVAVGLVTSCHLRLAVILFEVVFVLAIASSLLFPFETMG 345 (357)
Q Consensus 287 R~~~~~~~~~~~~l~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~pet~~ 345 (357)
|+.+..+ ..+.+.++...|....++.. ++.+.+++.....++..++ ++++||.+.
T Consensus 205 R~~~~~~-~~~~~~~~~~~~~~~a~~~~--~Wr~~~~~~~~~~~~~~~~-~~l~~Es~r 259 (521)
T KOG0255|consen 205 RGLALTL-GGFFFVGGLMLPAGAAYITR--DWRWLFWIISIPSGLFLLL-WFLPPESPR 259 (521)
T ss_pred hhHHHHH-HHHHHHHHHHHHHHHHHHHh--hHHHHHHHHHHHHHHHHHH-HHccCcChH
Confidence 9999999 88888888888888777766 3334444444444444333 666778654
No 143
>PRK10207 dipeptide/tripeptide permease B; Provisional
Probab=98.88 E-value=1.2e-07 Score=91.61 Aligned_cols=163 Identities=12% Similarity=0.090 Sum_probs=94.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCCCcccccCCCCCchhhHHHHHHHHhhhhhHHHHHHHHHHh-hchh
Q 018373 152 LIRTTLLLWVLFFANVFSYYGAVLLTSKLSSGDNKCGSKVLHADKSKDNSLYVDVFIASLAELPGLILSAIIVDK-IGRK 230 (357)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~d~-~GRR 230 (357)
+.|....++...+...+.||+..-+.+.+..+. . ..++..................+++|++.|| +|||
T Consensus 12 ~p~~~~~~~~~~~~er~~~y~~~~~l~~yl~~~-------l---g~~~~~a~~i~~~~~~~~~~~~~~~G~laDr~~G~r 81 (489)
T PRK10207 12 QPRPFFMIFFVELWERFGYYGVQGILAVFFVKQ-------L---GFSQEQAFITFGAFAALVYGLISIGGYVGDHLLGTK 81 (489)
T ss_pred CChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------c---CCCHHHHHHHHHHHHHHHHHHHhhHHHhhhhccchH
Confidence 334445555555667788888765544332110 0 1111111111112223344555689999999 9999
Q ss_pred HHHHHHHHHHHHHHHHHHhhhh-hHHHHHHHHHHHHHhhhhhhhhhhhccccccCcc--hhhHHHHHHHHHHHHHhHHHH
Q 018373 231 LSMVLMFVSACIFLLPLVFHQS-AVVTTVLLFGVRMCVTGTITVATIYAPEIYPTSA--RTTGFGVASSLGKVGGMVCPL 307 (357)
Q Consensus 231 ~~~~~~~~~~~i~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ElfPt~~--R~~~~~~~~~~~~l~~~~~p~ 307 (357)
++++.+.++..+..+......+ .....+.............+....+.+|.||.+. |..+.++.+....+++.++|.
T Consensus 82 ~~~~~g~~~~~~g~~~~~~~~~~~~ll~~~~~l~~ig~g~~~~~~~~li~~~~p~~~~~~~~~~~~~~~~~nig~~~g~~ 161 (489)
T PRK10207 82 RTIVLGAIVLAIGYFMTGMSLLKPDLIFIALGTIAVGNGLFKANPASLLSKCYPPKDPRLDGAFTLFYMSINIGSLISLS 161 (489)
T ss_pred HHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHhccccccCCHHHHHHHhcCCCchhhhcchhHHHHHHHHHHHHHHH
Confidence 9999888776665544443322 1111111111112212223456788999999885 477888888888899989998
Q ss_pred HHHHHHhhcchhhHHHH
Q 018373 308 VAVGLVTSCHLRLAVIL 324 (357)
Q Consensus 308 ~~~~l~~~~~~~~~~~~ 324 (357)
+.+++.+..++...|++
T Consensus 162 l~g~l~~~~gw~~~F~i 178 (489)
T PRK10207 162 LAPVIADKFGYSVTYNL 178 (489)
T ss_pred HHHHHHHhhChHHHHHH
Confidence 88888776665444444
No 144
>PRK11462 putative transporter; Provisional
Probab=98.88 E-value=2.9e-06 Score=81.60 Aligned_cols=107 Identities=12% Similarity=0.083 Sum_probs=59.1
Q ss_pred HHHhhhhhHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHH-hhhh-hHHHHHHHHHHHHHhhhhhhhhhhhcccccc--
Q 018373 208 IASLAELPGLILSAIIVDKIGRKLSMVLMFVSACIFLLPLV-FHQS-AVVTTVLLFGVRMCVTGTITVATIYAPEIYP-- 283 (357)
Q Consensus 208 i~~~~~~~~~~~~~~l~d~~GRR~~~~~~~~~~~i~~~~~~-~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ElfP-- 283 (357)
+..+..+++.++++++.||+|+|+.......+..+....+. .... ........+...+......++.+.+.+|.-.
T Consensus 271 ~~~i~~iig~~l~~~l~~r~gkk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~l~~~m~ad~~d~~ 350 (460)
T PRK11462 271 TYCVGNLIGSALAKPLTDWKCKVTIFWWTNALLAVISLAMFFVPMQASITMFVFIFVIGVLHQLVTPIQWVMMSDTVDYG 350 (460)
T ss_pred HHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhh
Confidence 44566778889999999999999887654433322222222 2222 1111121112222222223455677776655
Q ss_pred ---CcchhhHHHHH--HHHHHHHHhHHHHHHHHHHh
Q 018373 284 ---TSARTTGFGVA--SSLGKVGGMVCPLVAVGLVT 314 (357)
Q Consensus 284 ---t~~R~~~~~~~--~~~~~l~~~~~p~~~~~l~~ 314 (357)
+..|..|..++ ..+..++..+++.+...+++
T Consensus 351 e~~tG~r~~g~~~a~~~f~~Klg~alg~~i~g~iL~ 386 (460)
T PRK11462 351 EWCNGKRLTGISFAGTLFVLKLGLAFGGALIGWMLA 386 (460)
T ss_pred HHhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55676666444 36667777777766665554
No 145
>TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter.
Probab=98.87 E-value=1.1e-07 Score=91.47 Aligned_cols=136 Identities=11% Similarity=0.054 Sum_probs=93.4
Q ss_pred HHHhhhhhHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHhh--hhhHHHHHHHHHHHHHhhhhhhhhhhhccccccCc
Q 018373 208 IASLAELPGLILSAIIVDKIGRKLSMVLMFVSACIFLLPLVFH--QSAVVTTVLLFGVRMCVTGTITVATIYAPEIYPTS 285 (357)
Q Consensus 208 i~~~~~~~~~~~~~~l~d~~GRR~~~~~~~~~~~i~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ElfPt~ 285 (357)
...++..++.++.+++.||+|||+.+..+.++.++..+..... .......+.-+...+.....++....+.+|.+|.+
T Consensus 84 ~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~~~G~~~~~~~~~~~~~~~~~~~~~ 163 (465)
T TIGR00894 84 SHFYGQIIIQIPVGYLAGKYVFKWSIGIGMFLSSVISIVIPWAAGGGIALVVFCRVIQGLAQGSVSPATHKIIVKWAPPK 163 (465)
T ss_pred HHHHHHHHHHcchHHHHHHhCcchhhHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHhcccchhhHHHHHHhcCCHH
Confidence 3456678888999999999999999988777665554333221 11112112222222232334567788999999999
Q ss_pred chhhHHHHHHHHHHHHHhHHHHHHHHHHhhc-chhhHHHHHHHHHHHHHHHHhhccccc
Q 018373 286 ARTTGFGVASSLGKVGGMVCPLVAVGLVTSC-HLRLAVILFEVVFVLAIASSLLFPFET 343 (357)
Q Consensus 286 ~R~~~~~~~~~~~~l~~~~~p~~~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~pet 343 (357)
.|++++|+......++..++|.+...+.+.. ++..++++.+++.++..++.++++||.
T Consensus 164 ~r~~~~~~~~~~~~~g~~i~~~l~~~l~~~~~gw~~~f~i~~~~~~~~~~~~~~~~~~~ 222 (465)
T TIGR00894 164 ERSRLLGMSTSGFQLGTFIFLPISGWLCESWGGWPMIFYVFGIVGCAWSLLWFVFPADD 222 (465)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCeehhhhhHHHHHHHHHHHHHhcCC
Confidence 9999999999999999999998888776653 555667777776666656555555553
No 146
>PRK09584 tppB putative tripeptide transporter permease; Reviewed
Probab=98.87 E-value=1.6e-07 Score=91.13 Aligned_cols=162 Identities=14% Similarity=0.066 Sum_probs=90.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCCCcccccCCCCCchhhHHHHHHHHhhhhhHHHHHHHHHHh-hchhHHHH
Q 018373 156 TLLLWVLFFANVFSYYGAVLLTSKLSSGDNKCGSKVLHADKSKDNSLYVDVFIASLAELPGLILSAIIVDK-IGRKLSMV 234 (357)
Q Consensus 156 ~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~d~-~GRR~~~~ 234 (357)
....+...+...+.||+...+.+.+..+. .+ .+...................+++|++.|| +|||+.++
T Consensus 23 ~~~~~~~~~~~~~~~y~~~~~l~~yl~~~-------lg---~s~~~a~~~~~~~~~~~~~~~~~~G~LaDr~~G~r~~~~ 92 (500)
T PRK09584 23 FYLIFSIELWERFGYYGLQGIMAVYLVKQ-------LG---MSEADSITLFSSFSALVYGLVAIGGWLGDKVLGTKRVIM 92 (500)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------cC---CCHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHH
Confidence 44445555666677777766655433110 00 111111111111122223334678999999 59999998
Q ss_pred HHHHHHHHHHHHHHhhh-hhHHHHHHHHHHHHHhhhhhhhhhhhccccccCcc--hhhHHHHHHHHHHHHHhHHHHHHHH
Q 018373 235 LMFVSACIFLLPLVFHQ-SAVVTTVLLFGVRMCVTGTITVATIYAPEIYPTSA--RTTGFGVASSLGKVGGMVCPLVAVG 311 (357)
Q Consensus 235 ~~~~~~~i~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ElfPt~~--R~~~~~~~~~~~~l~~~~~p~~~~~ 311 (357)
.+.++..+....+.... .............+......+....+.+|.||.+. |..+.++.+....+++.++|.+.++
T Consensus 93 ~g~~~~~ig~~l~~~~~~~~~~l~~~~~l~gig~g~~~~~~~~l~~~~f~~~~~~~~~~~~~~~~~~~iG~~~gp~i~g~ 172 (500)
T PRK09584 93 LGAIVLAIGYALVAWSGHDAGIVYMGMATIAVGNGLFKANPSSLLSTCYEKDDPRLDGAFTMYYMSINIGSFFSMLATPW 172 (500)
T ss_pred HHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhhhcccCCHHHHHHHhcCCCchhhhhcchHHHHHHHHHHHHHHHHHHH
Confidence 87776655444333322 11111111111112212223455678999998653 4557788888889999999999988
Q ss_pred HHhhcchhhHHHHHHH
Q 018373 312 LVTSCHLRLAVILFEV 327 (357)
Q Consensus 312 l~~~~~~~~~~~~~~~ 327 (357)
+.+..++...|.+.++
T Consensus 173 l~~~~g~~~~F~i~~i 188 (500)
T PRK09584 173 LAAKYGWSVAFALSVV 188 (500)
T ss_pred HHHhhCHHHHHHHHHH
Confidence 8776665555555443
No 147
>KOG1330 consensus Sugar transporter/spinster transmembrane protein [Carbohydrate transport and metabolism]
Probab=98.87 E-value=2.6e-09 Score=98.39 Aligned_cols=109 Identities=17% Similarity=0.205 Sum_probs=60.8
Q ss_pred HHHHhhhhhHHHHHHHHHHhhchh-------HHHHHHHHHHHHHHHHHH----h-hhhhHHHH-HHHHHHHHHhhhhhhh
Q 018373 207 FIASLAELPGLILSAIIVDKIGRK-------LSMVLMFVSACIFLLPLV----F-HQSAVVTT-VLLFGVRMCVTGTITV 273 (357)
Q Consensus 207 ~i~~~~~~~~~~~~~~l~d~~GRR-------~~~~~~~~~~~i~~~~~~----~-~~~~~~~~-~~~~~~~~~~~~~~~~ 273 (357)
.++..++.+|.++++.+.||+-|+ +.--....+.....+++. . ........ ++.+.........++.
T Consensus 290 ~vt~~~G~lGvl~Ggiisd~~~~~~~~~~~~~~~q~~~~~g~~~s~~~L~~~~~~~~~s~~~~~il~~~g~~~~~~~~a~ 369 (493)
T KOG1330|consen 290 GVTCAGGSLGVLFGGIISDKLSRIFPNSGTLRASQLSAALGAPLSIPFLFLFPAFTSSSMIFGLILFLVGETISWFNWAT 369 (493)
T ss_pred hHHHhhchhhheehHHHHHHHHHhcccccchhHHHHHHhhhhhHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhccccc
Confidence 456788899999999999995432 111111111111111111 1 11111111 1222221222223344
Q ss_pred hhhhccccccCcchhhHHHHHHHHHHHHH-hHHHHHHHHHHhh
Q 018373 274 ATIYAPEIYPTSARTTGFGVASSLGKVGG-MVCPLVAVGLVTS 315 (357)
Q Consensus 274 ~~~~~~ElfPt~~R~~~~~~~~~~~~l~~-~~~p~~~~~l~~~ 315 (357)
.--+..|+.|.+.|+++.++...+.++.+ +.+|++.+.+.+.
T Consensus 370 n~~i~l~vV~p~~Rt~a~a~~~~~~h~fgd~~~p~ivGilsd~ 412 (493)
T KOG1330|consen 370 NNPIFLEVVPPSRRTTAYALDTVFEHIFGDAASPYIVGILSDK 412 (493)
T ss_pred ccceeeEecCcccccHHHHHHHHHHHHhccCCCcceehhHHHH
Confidence 45578899999999999999999987655 5557677766654
No 148
>TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial. The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists.
Probab=98.86 E-value=2.1e-06 Score=82.87 Aligned_cols=72 Identities=11% Similarity=-0.033 Sum_probs=48.9
Q ss_pred hhhhhhhhccccccCcchhhHHHHHHHHHHHHHhHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHHhhccc
Q 018373 270 TITVATIYAPEIYPTSARTTGFGVASSLGKVGGMVCPLVAVGLVTSCHLRLAVILFEVVFVLAIASSLLFPF 341 (357)
Q Consensus 270 ~~~~~~~~~~ElfPt~~R~~~~~~~~~~~~l~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~p 341 (357)
..+..+.+.+|.-|.+.|++.+|+......++..+++.+........+..+.+...+..+++..++.++..|
T Consensus 398 ~~p~~~~~~~~~aP~~~~g~~~g~~~l~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 469 (475)
T TIGR00924 398 ISPLGLSWWTKIAPQRLMGQMLGMWFLAQAMGSLLGGYLATFGAVPQGVTGVFGKIGLVTLLVGVVMALMVP 469 (475)
T ss_pred HhHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHHHHHHHHHHHH
Confidence 446778899999999999999999998888888888777654433323333344445555555555544443
No 149
>PRK10077 xylE D-xylose transporter XylE; Provisional
Probab=98.84 E-value=2e-07 Score=89.96 Aligned_cols=137 Identities=18% Similarity=0.107 Sum_probs=85.3
Q ss_pred HHHHhhhhhHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHhh---------hhhH-HHH--HHHHHHHHHhhhhhhhh
Q 018373 207 FIASLAELPGLILSAIIVDKIGRKLSMVLMFVSACIFLLPLVFH---------QSAV-VTT--VLLFGVRMCVTGTITVA 274 (357)
Q Consensus 207 ~i~~~~~~~~~~~~~~l~d~~GRR~~~~~~~~~~~i~~~~~~~~---------~~~~-~~~--~~~~~~~~~~~~~~~~~ 274 (357)
.+..++..++.++.+++.||+|||+.++.+.++..+..+..... .+.. ... +.-+...+...+..+..
T Consensus 62 s~~~ig~~~~~~~~G~l~dr~Grr~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~ 141 (479)
T PRK10077 62 ASALIGCIIGGALGGYCSNRFGRRDSLKIAAVLFFISALGSAWPEFGFTSIGPDNTGYVPEFVIYRIIGGIGVGLASMLS 141 (479)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHhhccccccccccchhHHHHHHHHHHHHhhhHhHHhhHH
Confidence 34567778999999999999999999988776654443332211 1111 111 11122223333445677
Q ss_pred hhhccccccCcchhhHHHHHHHHHHHHHhHHHHHHHHHH--------hhcchhhHHHHHHHHHHHHHHHHhhcccccc
Q 018373 275 TIYAPEIYPTSARTTGFGVASSLGKVGGMVCPLVAVGLV--------TSCHLRLAVILFEVVFVLAIASSLLFPFETM 344 (357)
Q Consensus 275 ~~~~~ElfPt~~R~~~~~~~~~~~~l~~~~~p~~~~~l~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~pet~ 344 (357)
..+.+|.+|.+.|+++.++......++..+++.+...+. +..++...+++.++..++..+ ..++.||+.
T Consensus 142 ~~~i~e~~~~~~rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~gWr~~f~~~~~~~~~~~~-~~~~l~~s~ 218 (479)
T PRK10077 142 PMYIAEIAPAHIRGKLVSFNQFAIIFGQLVVYFVNYFIARSGDASWLNTDGWRYMFASEAIPALLFLM-LLYFVPETP 218 (479)
T ss_pred HHHHHhhCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHhccCcccccccCChHHHHHHHHHHHHHHHH-HHHcCCCCc
Confidence 889999999999999999988777777777665443222 123344455555555555443 455678875
No 150
>PRK10406 alpha-ketoglutarate transporter; Provisional
Probab=98.84 E-value=5.1e-07 Score=86.09 Aligned_cols=137 Identities=21% Similarity=0.090 Sum_probs=81.5
Q ss_pred HHHhhhhhHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHhhhh-h---HH----HHHHHHHHHHHhhhhhhhhhhhcc
Q 018373 208 IASLAELPGLILSAIIVDKIGRKLSMVLMFVSACIFLLPLVFHQS-A---VV----TTVLLFGVRMCVTGTITVATIYAP 279 (357)
Q Consensus 208 i~~~~~~~~~~~~~~l~d~~GRR~~~~~~~~~~~i~~~~~~~~~~-~---~~----~~~~~~~~~~~~~~~~~~~~~~~~ 279 (357)
...++..+|.++.|++.||+|||+.+..+....++..+...+..+ . .. ..+.-+...+...+.++....+.+
T Consensus 71 ~~~~~~~ig~~~~G~l~Dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~G~g~g~~~~~~~~~i~ 150 (432)
T PRK10406 71 AGFLMRPIGGWLFGRIADKHGRKKSMLISVCMMCFGSLVIACLPGYETIGTWAPALLLLARLFQGLSVGGEYGTSATYMS 150 (432)
T ss_pred HHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHhhhhhhHhhHHHHHH
Confidence 344556689999999999999999998888777665555443211 1 11 111112222233344667789999
Q ss_pred ccccCcchhhHHHHHHHHHHHHHhHHHHHHHHHH--------hhcchhhHHHHHHHHHHHHHHHHhhccccccC
Q 018373 280 EIYPTSARTTGFGVASSLGKVGGMVCPLVAVGLV--------TSCHLRLAVILFEVVFVLAIASSLLFPFETMG 345 (357)
Q Consensus 280 ElfPt~~R~~~~~~~~~~~~l~~~~~p~~~~~l~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~pet~~ 345 (357)
|.+|.+.|++..++.......+..+++.+...+. ...++..+|++.++..++. ++.....||++.
T Consensus 151 e~~p~~~rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~gWr~~F~i~~~~~ll~-~~~~~~~~e~~~ 223 (432)
T PRK10406 151 EVAVEGRKGFYASFQYVTLIGGQLLALLVVVVLQQTLEDAELREWGWRIPFALGAVLAVVA-LWLRRQLDETSQ 223 (432)
T ss_pred HhCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHhccchHHHHHHHHHHHHHH-HHHHhcCCCCch
Confidence 9999999999988776555555555554432221 1234444555544444433 333445677653
No 151
>COG0738 FucP Fucose permease [Carbohydrate transport and metabolism]
Probab=98.84 E-value=2.5e-06 Score=77.81 Aligned_cols=121 Identities=12% Similarity=0.154 Sum_probs=79.1
Q ss_pred HHHHhhhhhHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhhhhccccccCcc
Q 018373 207 FIASLAELPGLILSAIIVDKIGRKLSMVLMFVSACIFLLPLVFHQSAVVTTVLLFGVRMCVTGTITVATIYAPEIYPTSA 286 (357)
Q Consensus 207 ~i~~~~~~~~~~~~~~l~d~~GRR~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ElfPt~~ 286 (357)
...-.+.++|-+++.+++.|+...+.+.+..++....++......+ ...+...+.+.++....++..+....+-.|.+.
T Consensus 279 s~~~~~~~vGRFig~~lm~~~~~~k~Laf~a~~~ill~~~~~l~~g-~v~~~~l~~ig~F~simfPTIfslal~~l~~~t 357 (422)
T COG0738 279 SFFWVGFMVGRFIGSALMSRIKPEKYLAFYALIAILLLLAVALIGG-VVALYALFLIGLFNSIMFPTIFSLALKNLGEHT 357 (422)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHhcC-hHHHHHHHHHHHHhHHHHHHHHHHHHhccCccc
Confidence 3445667889999999999999999888777665555544444332 222233344445556678888899999999555
Q ss_pred hhhHHHHHHHHHHHHHhHHHHHHHHHHhhcchhhHHHHHHHHHH
Q 018373 287 RTTGFGVASSLGKVGGMVCPLVAVGLVTSCHLRLAVILFEVVFV 330 (357)
Q Consensus 287 R~~~~~~~~~~~~l~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~ 330 (357)
-..+..++.++ .|+.+.|++.+.+.+..+....+......|.
T Consensus 358 s~~s~~l~mai--vGGAiiP~l~G~i~d~~g~~~~~~~~pllc~ 399 (422)
T COG0738 358 SVGSGLLVMAI--VGGAIIPPLQGVIADMFGIQLTFLIVPLLCY 399 (422)
T ss_pred cccceeeeehe--ecchHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 55554444443 7888999999988877654433333333333
No 152
>PRK11195 lysophospholipid transporter LplT; Provisional
Probab=98.82 E-value=4.4e-07 Score=85.42 Aligned_cols=132 Identities=13% Similarity=0.023 Sum_probs=85.8
Q ss_pred HHHhhhhhHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhhhhccccccCcch
Q 018373 208 IASLAELPGLILSAIIVDKIGRKLSMVLMFVSACIFLLPLVFHQSAVVTTVLLFGVRMCVTGTITVATIYAPEIYPTSAR 287 (357)
Q Consensus 208 i~~~~~~~~~~~~~~l~d~~GRR~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ElfPt~~R 287 (357)
...+...+..++.|.+.||+|||+.++.+..+..+..+......+. ....+..........+....+.+|++|.+.|
T Consensus 46 ~~~l~~~l~~~~~G~laDr~grr~vl~~~~~~~~~~~~~~~~~~~~---~~~r~l~G~~~a~~~pa~~a~i~~~~~~~~~ 122 (393)
T PRK11195 46 FFVLAYIVLAPFVGAFADSFPKGRVMFIANGIKLLGCLLMLFGIHP---LLAYGLVGIGAAAYSPAKYGILTELLPGEKL 122 (393)
T ss_pred HHHHHHHHHHhhhhHhhhccCCchhhHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHcCHHHH
Confidence 3445667778899999999999999988877655443332222222 1111222223334456778899999999999
Q ss_pred hhHHHHHHHHHHHHHhHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHHhhcccccc
Q 018373 288 TTGFGVASSLGKVGGMVCPLVAVGLVTSCHLRLAVILFEVVFVLAIASSLLFPFETM 344 (357)
Q Consensus 288 ~~~~~~~~~~~~l~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~pet~ 344 (357)
++++|+......++..++|.+...+.+.. ...++.+.+.+.+++ ++..++.||.+
T Consensus 123 ~~a~~~~~~~~~~~~~~Gp~lgG~l~~~~-~~~~~~i~~~~~~~~-~~~~~~l~~~~ 177 (393)
T PRK11195 123 VKANGWMEGSTIAAILLGTVLGGALADPH-AEAALAVCALIYLLA-ALFNLFIPRLG 177 (393)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHH-HHHHhcCCCCc
Confidence 99999999888888899999888776642 222333333332333 33445567654
No 153
>COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism]
Probab=98.80 E-value=7.9e-08 Score=87.92 Aligned_cols=138 Identities=14% Similarity=0.133 Sum_probs=103.4
Q ss_pred HhhhhhHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhhhhccccccCcchhh
Q 018373 210 SLAELPGLILSAIIVDKIGRKLSMVLMFVSACIFLLPLVFHQSAVVTTVLLFGVRMCVTGTITVATIYAPEIYPTSARTT 289 (357)
Q Consensus 210 ~~~~~~~~~~~~~l~d~~GRR~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ElfPt~~R~~ 289 (357)
.+.--++-.+.|.++||.+.|..+..+.++++++.+.+.+..+-....++.....++-...++.+.-...--||.+-|++
T Consensus 74 ~i~YG~sKf~~G~~sDr~npr~fm~~gLilsai~nil~Gfs~s~~~~~~l~~lng~fQg~Gwpp~~~~i~~Wfsr~eRG~ 153 (448)
T COG2271 74 SITYGVSKFVMGVLSDRSNPRYFMAFGLILSAIVNILFGFSPSLFLFAVLWVLNGWFQGMGWPPCARTITHWFSRKERGT 153 (448)
T ss_pred HHHHHHHHHHhhhhcccCCCceeehHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHcCccccCc
Confidence 34456677888999999999999999999999988877776544444444555555555667777888888999999999
Q ss_pred HHHHHHHHHHHHHhHHHHHH--HHHHhhcchhhHHHHHHHHHHHHHHHHhhcc---ccccCcc
Q 018373 290 GFGVASSLGKVGGMVCPLVA--VGLVTSCHLRLAVILFEVVFVLAIASSLLFP---FETMGRE 347 (357)
Q Consensus 290 ~~~~~~~~~~l~~~~~p~~~--~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~---pet~~~~ 347 (357)
..++-+..+++|+.+.|.+. ..+..+.++...|++=++++++.+++.++.. ||+.|.+
T Consensus 154 ~~siWn~shNiGGal~~~~~~la~~~~~~~w~~~f~~pgiiaiival~~~~~~rd~Pqs~GLP 216 (448)
T COG2271 154 WWSIWNTSHNIGGALAPLVALLAFFAFHGGWRAAFYFPGIIAIIVALILLFLLRDRPQSEGLP 216 (448)
T ss_pred eEEEehhhhhcccchHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHhCCCccccCCC
Confidence 99999999999998888887 5555554555666666777777777776654 4444443
No 154
>PRK09584 tppB putative tripeptide transporter permease; Reviewed
Probab=98.77 E-value=1.4e-06 Score=84.69 Aligned_cols=43 Identities=14% Similarity=0.142 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHhhHHHHHH
Q 018373 21 WMVALSAFWTAGTIFEASLAWVVMTRLNWRWLLAFSSVPSFAL 63 (357)
Q Consensus 21 ~~~~~~~~~~~G~l~~~~i~~~~~~~~~WR~~~~~~~~p~l~~ 63 (357)
..+....+.++|..++..+...+.+..+||+.|.+..+..++.
T Consensus 151 ~~~~~~~~~~iG~~~gp~i~g~l~~~~g~~~~F~i~~i~~~i~ 193 (500)
T PRK09584 151 AFTMYYMSINIGSFFSMLATPWLAAKYGWSVAFALSVVGMLIT 193 (500)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHH
Confidence 4455666777777777666655556679999999987644443
No 155
>COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism]
Probab=98.77 E-value=1.2e-06 Score=80.73 Aligned_cols=135 Identities=13% Similarity=0.039 Sum_probs=100.7
Q ss_pred HHHHhhhhhHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhhhhccccccCcc
Q 018373 207 FIASLAELPGLILSAIIVDKIGRKLSMVLMFVSACIFLLPLVFHQSAVVTTVLLFGVRMCVTGTITVATIYAPEIYPTSA 286 (357)
Q Consensus 207 ~i~~~~~~~~~~~~~~l~d~~GRR~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ElfPt~~ 286 (357)
.+...+..++.++...+.||+.||++++....+..+..+......+-....+.=+...+.....+++...+.+++-|.+.
T Consensus 55 s~yAl~~ai~ap~l~~lt~r~~Rr~lLl~~l~lFi~~n~l~alAp~f~~Ll~aR~~~g~a~G~f~~i~~~~a~~lvpp~~ 134 (394)
T COG2814 55 TAYALGVALGAPLLALLTGRLERRRLLLGLLALFIVSNLLSALAPSFAVLLLARALAGLAHGVFWSIAAALAARLVPPGK 134 (394)
T ss_pred HHHHHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccc
Confidence 34566778889999999999999999988776665555443432222211111122222333456788899999999999
Q ss_pred hhhHHHHHHHHHHHHHhHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHHhhccc
Q 018373 287 RTTGFGVASSLGKVGGMVCPLVAVGLVTSCHLRLAVILFEVVFVLAIASSLLFPF 341 (357)
Q Consensus 287 R~~~~~~~~~~~~l~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~p 341 (357)
|+.++++...-.-+..+++..+..++-+..|+-.+|+..+.+++++.+..+..+|
T Consensus 135 ~~~Aiaiv~~G~tlA~v~GvPLGt~ig~~~GWR~~F~~ia~l~ll~~~~~~~~lP 189 (394)
T COG2814 135 RGRALALVFTGLTLATVLGVPLGTFLGQLFGWRATFLAIAVLALLALLLLWKLLP 189 (394)
T ss_pred hhhHHHHHHHHHHHHHHHhccHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 9999999998888888888777777777778888899999999999888888888
No 156
>TIGR00892 2A0113 monocarboxylate transporter 1.
Probab=98.76 E-value=4.2e-07 Score=87.26 Aligned_cols=131 Identities=12% Similarity=0.057 Sum_probs=84.7
Q ss_pred HhhhhhHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHhhhhhHHHHHHH-HHHHHHhhhhhhhhhhhccccccCcchh
Q 018373 210 SLAELPGLILSAIIVDKIGRKLSMVLMFVSACIFLLPLVFHQSAVVTTVLL-FGVRMCVTGTITVATIYAPEIYPTSART 288 (357)
Q Consensus 210 ~~~~~~~~~~~~~l~d~~GRR~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ElfPt~~R~ 288 (357)
.....++.++.|+++||+|||+.++.+.++..+..+...+..+........ +...+...........+..|.|| +.|+
T Consensus 64 ~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~G~~~~~~~~~~~~~~~~~~~-~~r~ 142 (455)
T TIGR00892 64 LAVLYAGGPISSILVNRFGCRPVVIAGGLLASLGMILASFSSNVIELYLTAGFITGLGLAFNFQPSLTMLGKYFY-RRRP 142 (455)
T ss_pred HHHHHHhhHHHHHHHHHcCchHHHHhhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHH-hhHH
Confidence 344566778899999999999999887766555444433322221111111 11111111122344567788897 7899
Q ss_pred hHHHHHHHHHHHHHhHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHHhhccc
Q 018373 289 TGFGVASSLGKVGGMVCPLVAVGLVTSCHLRLAVILFEVVFVLAIASSLLFPF 341 (357)
Q Consensus 289 ~~~~~~~~~~~l~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~p 341 (357)
++.|+.+....+++.++|.+...+.+..++..++++.+++.+++.+..++..|
T Consensus 143 ~a~g~~~~~~~~g~~~~~~l~~~l~~~~gwr~~f~~~~~~~~~~~v~~~~~~~ 195 (455)
T TIGR00892 143 LANGLAMAGSPVFLSTLAPLNQYLFESFGWRGSFLILGGLLLHCCVCGALMRP 195 (455)
T ss_pred HHHHHHHhcccHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhCC
Confidence 99999999999998888888887777666667777777766655555444433
No 157
>PRK09556 uhpT sugar phosphate antiporter; Reviewed
Probab=98.76 E-value=1.7e-07 Score=90.37 Aligned_cols=132 Identities=14% Similarity=0.027 Sum_probs=82.2
Q ss_pred HHhhhhhHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHh-----hhhhHHHHHHHHHHHHHhhhhhhhhhhhcccccc
Q 018373 209 ASLAELPGLILSAIIVDKIGRKLSMVLMFVSACIFLLPLVF-----HQSAVVTTVLLFGVRMCVTGTITVATIYAPEIYP 283 (357)
Q Consensus 209 ~~~~~~~~~~~~~~l~d~~GRR~~~~~~~~~~~i~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ElfP 283 (357)
..++..++.++.|++.||+|||+.+..+.+..++....+.. .++.....+.-+...+.....++....+.+|.||
T Consensus 73 ~~~~~~~~~~~~G~l~Dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~ 152 (467)
T PRK09556 73 FSITYGVGKTLVGYYADGKNTKQFLPFLLILSAICMLGFGASLGSGSVSLGLMIALWALSGFFQSTGGPCSYSTITRWTP 152 (467)
T ss_pred HHHHHHHHHhhhhhHhhccCccchHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHhccchHHHHHHHHHcC
Confidence 35556778889999999999999988776665554433322 1122111122222222223334566778999999
Q ss_pred CcchhhHHHHHHHHHHHHHhHHHHHHHHHHhhc---chhhHHHHHHHHHHHHHHHHhhcc
Q 018373 284 TSARTTGFGVASSLGKVGGMVCPLVAVGLVTSC---HLRLAVILFEVVFVLAIASSLLFP 340 (357)
Q Consensus 284 t~~R~~~~~~~~~~~~l~~~~~p~~~~~l~~~~---~~~~~~~~~~~~~~~~~~~~~~~~ 340 (357)
.+.|++++|+....+.+++.+++.+...+.+.. ++...+.+.+++.++..++.+++.
T Consensus 153 ~~~rg~a~gi~~~~~~lG~~l~~~i~~~~~~~~~~~~~~~~f~~~g~~~~~~~i~~~~~~ 212 (467)
T PRK09556 153 RRKRGRFLGFWNISHNLGGAGAGGVALWGANYFFDGHVIGMFIFPSIIALIIGFIGLRYG 212 (467)
T ss_pred ccceeeeEEeeecccchhhhHHHHHHHHHHHhhccCcchhHHHHHHHHHHHHHHHHHHhC
Confidence 999999999998888888888877765544432 122334444555554444444443
No 158
>PRK10489 enterobactin exporter EntS; Provisional
Probab=98.75 E-value=5.3e-07 Score=85.48 Aligned_cols=136 Identities=13% Similarity=0.100 Sum_probs=84.8
Q ss_pred HHHHhhhhhHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHH---h-hhhh-HHHHHHHHHHHHHhhhhhhhhhhhcccc
Q 018373 207 FIASLAELPGLILSAIIVDKIGRKLSMVLMFVSACIFLLPLV---F-HQSA-VVTTVLLFGVRMCVTGTITVATIYAPEI 281 (357)
Q Consensus 207 ~i~~~~~~~~~~~~~~l~d~~GRR~~~~~~~~~~~i~~~~~~---~-~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~El 281 (357)
....+...++.++.|.+.||+|||+.+..+....++....+. + .... ....+..+...++.....+....+.+|.
T Consensus 59 ~~~~l~~~~~~~~~G~l~dr~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~ 138 (417)
T PRK10489 59 TLTGGAMFIGLMVGGVLADRYDRKKLILLARGTCGLGFIGLALNAFLPEPSLLAIYLLGLWDGFFGSLGVTALLAATPAL 138 (417)
T ss_pred HHHHHHHHHHHHhhHHHhhhcCCceEEEehHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHhhhhhhc
Confidence 344566778889999999999999988776555444332221 1 1111 1111111111122122234456788999
Q ss_pred ccCcchhhHHHHHHHHHHHHHhHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHHhhccccc
Q 018373 282 YPTSARTTGFGVASSLGKVGGMVCPLVAVGLVTSCHLRLAVILFEVVFVLAIASSLLFPFET 343 (357)
Q Consensus 282 fPt~~R~~~~~~~~~~~~l~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~pet 343 (357)
+|.+.|+++.++.+....++..++|.+...+.+..+..+.+++.++..+++.+.. +..||+
T Consensus 139 ~~~~~~~~~~~~~~~~~~~g~~~g~~l~g~l~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~ 199 (417)
T PRK10489 139 VGRENLMQAGAITMLTVRLGSVISPALGGLLIAAGGVAWNYGLAAAGTFITLLPL-LRLPAL 199 (417)
T ss_pred cCHHHHHHHHHHHHHHHhHHHHhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH-HhCCCC
Confidence 9999999999999888889999999888777665555555555455544444443 344554
No 159
>COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism]
Probab=98.75 E-value=8.1e-07 Score=81.35 Aligned_cols=140 Identities=19% Similarity=0.174 Sum_probs=94.9
Q ss_pred hhHHHHHHHHhhhhhHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHh-hhhhHHHHHHHHH-HHHHhhhhhhhhhhhc
Q 018373 201 SLYVDVFIASLAELPGLILSAIIVDKIGRKLSMVLMFVSACIFLLPLVF-HQSAVVTTVLLFG-VRMCVTGTITVATIYA 278 (357)
Q Consensus 201 ~~~~~~~i~~~~~~~~~~~~~~l~d~~GRR~~~~~~~~~~~i~~~~~~~-~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 278 (357)
+......+-.+.+.+.-+..+++.||+|-|++...+++...+-.+.+.+ .+++.....+.+. ..-...+.+++...++
T Consensus 50 q~~ll~aiPil~GallRl~~g~l~drfGgR~~~~~s~~l~~IP~~~~~~a~~~~~~~~ll~~gll~G~~GasFav~m~~~ 129 (417)
T COG2223 50 QKGLLVAIPILVGALLRLPYGFLTDRFGGRKWTILSMLLLLIPCLGLAFAVTYPSTWQLLVIGLLLGLAGASFAVGMPNA 129 (417)
T ss_pred HHHHHHHHHHHHhHHHHHHHHhhhcccCchHHHHHHHHHHHHHHHHHHHHccCCchHHHHHHHHHHhcccceehcccccc
Confidence 3344445556666777788999999999999999888876665554443 2222111111111 1112245567888899
Q ss_pred cccccCcchhhHHHHHHHHHHHHHhHHHHHHHHHHhhcc---hhhHHHHHHHHHHHHHHHHhhccc
Q 018373 279 PEIYPTSARTTGFGVASSLGKVGGMVCPLVAVGLVTSCH---LRLAVILFEVVFVLAIASSLLFPF 341 (357)
Q Consensus 279 ~ElfPt~~R~~~~~~~~~~~~l~~~~~p~~~~~l~~~~~---~~~~~~~~~~~~~~~~~~~~~~~p 341 (357)
++-||++.+++++|+.- .|++|..+..++.+.+....+ +.....++....++..+..++.+.
T Consensus 130 s~~fP~~~qG~AlGI~g-~GN~G~av~q~~~P~v~~~~g~~~w~~~~~i~~~~l~v~~v~~~~~~~ 194 (417)
T COG2223 130 SFFFPKEKQGLALGIAG-AGNLGVAVAQLVAPLVAVAFGFLAWRNVAGIYVVALAIAAVLAWLGMN 194 (417)
T ss_pred cccCChhhhhHHHHHhc-cccccHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 99999999999999998 999988888888777766655 444556676666666676666543
No 160
>PRK09848 glucuronide transporter; Provisional
Probab=98.74 E-value=6.4e-06 Score=78.90 Aligned_cols=105 Identities=14% Similarity=0.075 Sum_probs=65.2
Q ss_pred hhhhhHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHhhh-hh-HHHHHHHHHHHHHhhhhhhhhhhhccccccC----
Q 018373 211 LAELPGLILSAIIVDKIGRKLSMVLMFVSACIFLLPLVFHQ-SA-VVTTVLLFGVRMCVTGTITVATIYAPEIYPT---- 284 (357)
Q Consensus 211 ~~~~~~~~~~~~l~d~~GRR~~~~~~~~~~~i~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ElfPt---- 284 (357)
+..+++.++.+++.||+|+|+.+..+..+..+..+.+.... .. +..........+......+..+.+.+|.-|.
T Consensus 275 ~~~~~~~~l~~~l~~r~g~~~~~~~g~~~~~i~~~~~~~~~~~~~~~~~~~~~l~g~G~~~~~~~~~al~~~~~~~~~~~ 354 (448)
T PRK09848 275 VGTVASAPLVPGMVARIGKKNTFLIGALLGTCGYLLFFWVSVWSLPVALVALAIASIGQGVTMTVMWALEADTVEYGEYL 354 (448)
T ss_pred HHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHh
Confidence 44567788889999999999998887766554443333321 12 1111111112222223345667777777764
Q ss_pred ---cchhhHHHHHHHHHHHHHhHHHHHHHHHHhh
Q 018373 285 ---SARTTGFGVASSLGKVGGMVCPLVAVGLVTS 315 (357)
Q Consensus 285 ---~~R~~~~~~~~~~~~l~~~~~p~~~~~l~~~ 315 (357)
+.++...|+.+....++..+++.+...+++.
T Consensus 355 ~g~r~~G~~~~~~~~~~klg~aig~~i~g~~l~~ 388 (448)
T PRK09848 355 TGVRIEGLTYSLFSFTRKCGQAIGGSIPAFILGL 388 (448)
T ss_pred hCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4568888888888888888888777665543
No 161
>PRK05122 major facilitator superfamily transporter; Provisional
Probab=98.74 E-value=7.3e-07 Score=83.90 Aligned_cols=121 Identities=11% Similarity=-0.054 Sum_probs=74.2
Q ss_pred HHHHhhhhhHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHh---hhh-h--HH--HHHHHHHHHHHhhhhhhhhhhhc
Q 018373 207 FIASLAELPGLILSAIIVDKIGRKLSMVLMFVSACIFLLPLVF---HQS-A--VV--TTVLLFGVRMCVTGTITVATIYA 278 (357)
Q Consensus 207 ~i~~~~~~~~~~~~~~l~d~~GRR~~~~~~~~~~~i~~~~~~~---~~~-~--~~--~~~~~~~~~~~~~~~~~~~~~~~ 278 (357)
....+...++.++.|.++||+|||+.+..+.+...+....... ..+ . .. ..+.-+..........+....+.
T Consensus 58 ~~~~~~~~i~~~~~G~l~Dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~ 137 (399)
T PRK05122 58 SLQYLATLLSRPHAGRYADTLGPKKAVVFGLCGCALSGLLYLLAGLLAAWPVLSLLLLLLGRLLLGIGESLAGTGSILWG 137 (399)
T ss_pred HHHHHHHHHhchhhHhHHhccCCcchHHHHHHHHHHHHHHHHHhhhhhccchhHHHHHHHHHHHHHhhHHhhcchHHHHH
Confidence 3445666788889999999999999999877665443222211 111 1 11 11111111112122234455677
Q ss_pred cccccCcchhhHHHHHHHHHHHHHhHHHHHHHHHHhhcchhhHHHHHHH
Q 018373 279 PEIYPTSARTTGFGVASSLGKVGGMVCPLVAVGLVTSCHLRLAVILFEV 327 (357)
Q Consensus 279 ~ElfPt~~R~~~~~~~~~~~~l~~~~~p~~~~~l~~~~~~~~~~~~~~~ 327 (357)
+|.+|.+.|+++.++......++..++|.+...+.+..+....+++.+.
T Consensus 138 ~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~~~l~~~~g~~~~~~~~~~ 186 (399)
T PRK05122 138 IGRVGALHTGRVISWNGIATYGALAIGAPLGVLLYHWGGLAGLGLLIML 186 (399)
T ss_pred HhhcChhhhccchhhhhhhhhHHHHHHHHHHHHHHHcccHHHHHHHHHH
Confidence 8999999999999988777777777888887776665554433333333
No 162
>COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism]
Probab=98.72 E-value=7.3e-06 Score=73.82 Aligned_cols=259 Identities=16% Similarity=0.178 Sum_probs=149.9
Q ss_pred chhhhhhcccccc-hhHHHHHHHHHHHHHHHHHHHHHHHhcC-cchHHHHHHhhHHHHHHHHHHhcCCCChHHHHHcCCh
Q 018373 6 YSWGIISDNYGRR-GRWMVALSAFWTAGTIFEASLAWVVMTR-LNWRWLLAFSSVPSFALLLFYGLAPESPRYLCAKART 83 (357)
Q Consensus 6 ~~~g~~~d~~grr-g~~~~~~~~~~~~G~l~~~~i~~~~~~~-~~WR~~~~~~~~p~l~~~~~~~~lpESP~wL~~~g~~ 83 (357)
++=|.+=.+++|| |.+++.+......|.-+++.++-.+..+ .+||....+=++|+++.++... |...|. +
T Consensus 119 LLPslIK~~Fpk~~~~mtglYs~sl~~~aaLaa~lavpla~~~~gW~~aL~~WAl~allAl~~Wl--Pq~~r~-----~- 190 (395)
T COG2807 119 LLPSLIKRDFPKRVGLMTGLYSTSLGAGAALAAALAVPLAQHSGGWRGALGFWALLALLALLIWL--PQALRE-----Q- 190 (395)
T ss_pred hhhHHHHhhcccchhhHHhHHHHHHHHHHHHHhhhhhHHHHhhccHHHHHHHHHHHHHHHHHHHh--hhcccc-----c-
Confidence 3445666778888 8888999999999988887776554433 4799999999999988777653 332211 0
Q ss_pred HHHHHHHHHHHHHcCCCCCCCcccchhhhhhhhhhhhhhcchhhhhhhhhhhhhccchhhhhhhcchhhHHHHHHHHHHH
Q 018373 84 VDAHRILEKMAFVNQTKLPPGILVSDKAIKENEESNLLRDTHMLSMTRKITDKLKSGFSSFFMLFSRKLIRTTLLLWVLF 163 (357)
Q Consensus 84 ~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 163 (357)
.++ .. .+ ..+...+++++. ...+.+.+
T Consensus 191 ~~~---------~~------~~-----------------------------------~~~~~~vw~~~~---aW~vtLfm 217 (395)
T COG2807 191 AAS---------IA------TK-----------------------------------LVSVRKVWRSPL---AWQVTLFM 217 (395)
T ss_pred ccc---------cc------cc-----------------------------------cccccccccCch---hHHHHHHH
Confidence 000 00 00 000011333321 23333344
Q ss_pred HHHHHHHHHHHHHhhhhcCCCCCCCcccccCCCCCchhhHHHHHHHHhhhhhHHHHHHHHHHhh-chhHHHHHHHHHHHH
Q 018373 164 FANVFSYYGAVLLTSKLSSGDNKCGSKVLHADKSKDNSLYVDVFIASLAELPGLILSAIIVDKI-GRKLSMVLMFVSACI 242 (357)
Q Consensus 164 ~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~d~~-GRR~~~~~~~~~~~i 242 (357)
..+++.||...-|.|.+..+.+ . +.. .+. ...-+..+.+++.++....+++|. .+|+..+....++.+
T Consensus 218 GlqS~~~Y~~~~WLP~ili~~G------~---sa~-~aG-~llsl~~l~~~~~~ll~P~la~R~~n~r~~~~~~~~~~l~ 286 (395)
T COG2807 218 GLQSLLYYIVIGWLPAILIDRG------L---SAA-EAG-SLLSLMQLAQLPTALLIPLLARRSKNQRPLVVLALLLMLV 286 (395)
T ss_pred HhhHHHHHHHHHHHHHHHHHcC------C---CHH-Hhh-hHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHH
Confidence 5678889999999998763321 1 111 111 112345778889999999999975 466655554444433
Q ss_pred HHHHHHh-h-hhhHHHHHHHHHHHHHhhhhhhhhhhhccccccC-cchhhHHHHHHHHHHHHHhHHHHHHHHHHhhcchh
Q 018373 243 FLLPLVF-H-QSAVVTTVLLFGVRMCVTGTITVATIYAPEIYPT-SARTTGFGVASSLGKVGGMVCPLVAVGLVTSCHLR 319 (357)
Q Consensus 243 ~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ElfPt-~~R~~~~~~~~~~~~l~~~~~p~~~~~l~~~~~~~ 319 (357)
-...+.+ + +...++ + +...+...+.++...+.++.-..+ +.-+.-.|++..+|++-+..+|+++..+-|..+..
T Consensus 287 G~~G~~~~P~~~~~lw-~--~llG~G~G~~F~laL~li~~rs~~a~~Aa~LSgmaQg~GYllAa~GP~l~G~lhDa~gsw 363 (395)
T COG2807 287 GLVGLLLAPGQLPILW-A--LLLGLGQGGAFPLALTLILLRSSDAAIAAALSGMAQGVGYLLAAFGPWLFGFLHDATGSW 363 (395)
T ss_pred HHHHHHHhhhhHHHHH-H--HHHhCccchHHHHHHHHHHhhcCChHHHHHHHHHhhhhhHHHHhhhhhhHhHHHHhcCCh
Confidence 3333222 2 223332 1 222222234455555544444443 45566678889999999999999999988876543
Q ss_pred -hHHHHHHHHHHHHHHHHhhc
Q 018373 320 -LAVILFEVVFVLAIASSLLF 339 (357)
Q Consensus 320 -~~~~~~~~~~~~~~~~~~~~ 339 (357)
.+...+....++..++.+..
T Consensus 364 ~~~~~~l~~~~i~m~i~Gl~a 384 (395)
T COG2807 364 SAPLVLLALATLLMLIFGLRA 384 (395)
T ss_pred HHHHHHHHHHHHHHHHHHhhc
Confidence 33444555555555555443
No 163
>PRK03633 putative MFS family transporter protein; Provisional
Probab=98.71 E-value=1.9e-06 Score=80.70 Aligned_cols=108 Identities=13% Similarity=-0.025 Sum_probs=70.7
Q ss_pred HHHHhhhhhHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhhhhccccccCcc
Q 018373 207 FIASLAELPGLILSAIIVDKIGRKLSMVLMFVSACIFLLPLVFHQSAVVTTVLLFGVRMCVTGTITVATIYAPEIYPTSA 286 (357)
Q Consensus 207 ~i~~~~~~~~~~~~~~l~d~~GRR~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ElfPt~~ 286 (357)
....++..++.++.+++.||+|||+.+..+.....+........++........+...+......+.......+..|.+.
T Consensus 48 s~~~l~~~~~~~~~g~l~dr~g~k~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~ 127 (381)
T PRK03633 48 SSYFTGNLVGTLLAGYVIKRIGFNRSYYLASLIFAAGCAGLGLMVGFWSWLAWRFVAGIGCAMIWVVVESALMCSGTSRN 127 (381)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHH
Confidence 34566778889999999999999999988776665544443333222221122222222212222333344567888899
Q ss_pred hhhHHHHHHHHHHHHHhHHHHHHHHHHh
Q 018373 287 RTTGFGVASSLGKVGGMVCPLVAVGLVT 314 (357)
Q Consensus 287 R~~~~~~~~~~~~l~~~~~p~~~~~l~~ 314 (357)
|+++.++.+....++..++|.+...+.+
T Consensus 128 ~~~~~~~~~~~~~~g~~~g~~~~~~l~~ 155 (381)
T PRK03633 128 RGRLLAAYMMVYYLGTVLGQLLVSKVST 155 (381)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 9999999998888998888888776544
No 164
>PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins. Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes [].
Probab=98.71 E-value=4.7e-06 Score=81.21 Aligned_cols=105 Identities=15% Similarity=0.196 Sum_probs=60.8
Q ss_pred HHhhhhhHHHHHHHHHHhhchhHHHH-HHHHHHHHHHHHHHh--hhhhHHHHHHHHHHHHHhhhhhhhhhhhccccccCc
Q 018373 209 ASLAELPGLILSAIIVDKIGRKLSMV-LMFVSACIFLLPLVF--HQSAVVTTVLLFGVRMCVTGTITVATIYAPEIYPTS 285 (357)
Q Consensus 209 ~~~~~~~~~~~~~~l~d~~GRR~~~~-~~~~~~~i~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ElfPt~ 285 (357)
.+.+...|.++.+.+..++||-|..+ ++.+....+...+.. .++......+.+...+...+.-....+.+.-.-|.+
T Consensus 358 ~~fg~~~g~~i~g~l~~~ir~~Kw~li~~~~~~ta~~Gama~~~~~n~~~~i~~~~l~g~giG~~~~~~~~~~ql~~p~~ 437 (599)
T PF06609_consen 358 VGFGSCAGAVILGLLFSKIRHIKWQLIFGSVLMTAFCGAMAAVRPDNKNAAIAFLVLAGFGIGGILVPAIVIAQLIVPDE 437 (599)
T ss_pred HHHHHHHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHHHccCCCcchHHHHHHHHHHhHHHHHHHHHHeeEeeeCch
Confidence 45556677788888988888777654 444444333333332 222222222233333333333345566777788888
Q ss_pred chhhHHHHHHHHHHHHHhHHHHHHHHHH
Q 018373 286 ARTTGFGVASSLGKVGGMVCPLVAVGLV 313 (357)
Q Consensus 286 ~R~~~~~~~~~~~~l~~~~~p~~~~~l~ 313 (357)
.=+++.|+..++-.+|+.++.-++..++
T Consensus 438 ~ig~a~gL~~s~R~~GGsIg~aIy~~I~ 465 (599)
T PF06609_consen 438 DIGTATGLTGSIRSIGGSIGYAIYNAIF 465 (599)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 8899988888877777666655544333
No 165
>TIGR00897 2A0118 polyol permease family. This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis.
Probab=98.70 E-value=7.9e-07 Score=83.93 Aligned_cols=111 Identities=7% Similarity=0.014 Sum_probs=69.1
Q ss_pred HHHHhhhhhHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHH---hhhhhHHH-HHHHHHHHHHhhhhhhhhhhhccccc
Q 018373 207 FIASLAELPGLILSAIIVDKIGRKLSMVLMFVSACIFLLPLV---FHQSAVVT-TVLLFGVRMCVTGTITVATIYAPEIY 282 (357)
Q Consensus 207 ~i~~~~~~~~~~~~~~l~d~~GRR~~~~~~~~~~~i~~~~~~---~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~Elf 282 (357)
....++..++.++.+.+.||+|||+.+..+..+.++...... ....+... ........+..............|.+
T Consensus 55 ~~~~~~~~i~~~~~g~l~dr~g~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~i~G~g~~~~~~~~~~~~~~~~ 134 (402)
T TIGR00897 55 TLYGIAAAISAWISGVVAEIIGPLKTMMIGLLLWCVGHAAFIVFGLGHANYPLILLFYGIRGLGYPLFAYSFLVWVVYNT 134 (402)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHhccCccHHHHHHHHHHHHcchHHHHhHHHHHHHHhC
Confidence 445677788999999999999999999887766555433221 11111111 11111111111111223445677899
Q ss_pred cCcchhhHHHHHHHHHHHHH-hHHHHHHHHHHhhcc
Q 018373 283 PTSARTTGFGVASSLGKVGG-MVCPLVAVGLVTSCH 317 (357)
Q Consensus 283 Pt~~R~~~~~~~~~~~~l~~-~~~p~~~~~l~~~~~ 317 (357)
|.+.|++++|+.+....++. ..+|.+...+.+..+
T Consensus 135 ~~~~~g~~~g~~~~~~~~g~~~~g~~~~~~l~~~~g 170 (402)
T TIGR00897 135 KQDNLSSAVGWFWAVYSIGIGVFGSYYSSYAIPAFG 170 (402)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccc
Confidence 99999999999998888875 467776665555444
No 166
>COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism]
Probab=98.69 E-value=1.3e-05 Score=75.67 Aligned_cols=111 Identities=19% Similarity=0.196 Sum_probs=68.2
Q ss_pred HHHHHHHhhhhhHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHhhh--hhHHHHHHHHHHHHHhhhhhhhhhhhcccc
Q 018373 204 VDVFIASLAELPGLILSAIIVDKIGRKLSMVLMFVSACIFLLPLVFHQ--SAVVTTVLLFGVRMCVTGTITVATIYAPEI 281 (357)
Q Consensus 204 ~~~~i~~~~~~~~~~~~~~l~d~~GRR~~~~~~~~~~~i~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~El 281 (357)
..........+++.++...+.+|+|+|+.+.++.++..+.-..+++.. +..+..+..+...+......+++|.+.+|.
T Consensus 276 ~~~~~~~~~~l~~~~~~p~L~~~~gkk~~~~~~~~~~~i~~~~~~f~~~~~~~l~~~~~~i~~~g~~~~~~l~wam~~d~ 355 (467)
T COG2211 276 LLLLASGAGLLIGLILWPRLVKKFGKKKLFLIGLLLLAVGYLLLYFTPAGSVVLIVVALIIAGVGTGIANPLPWAMVADT 355 (467)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHhchHHHHHHHHHHHHHHHHHHHhhcCcchHHHHHHHHHHHHHhhccccccHHHhcch
Confidence 333444555566688899999999999999988776666555544422 222222222333333344567899999987
Q ss_pred c-----cCcchhhHHHHH--HHHHHHHHhHHHHHHHHHHh
Q 018373 282 Y-----PTSARTTGFGVA--SSLGKVGGMVCPLVAVGLVT 314 (357)
Q Consensus 282 f-----Pt~~R~~~~~~~--~~~~~l~~~~~p~~~~~l~~ 314 (357)
- -|..|..|...+ ..+..++..++..+...+++
T Consensus 356 vDyge~~TG~R~eGi~~s~~tF~~K~g~ala~~~~g~~L~ 395 (467)
T COG2211 356 VDYGEWKTGVRREGIVYSGMTFFRKLGLALAGFIPGWILG 395 (467)
T ss_pred hhHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4 467777666555 33445666666555555444
No 167
>PRK09705 cynX putative cyanate transporter; Provisional
Probab=98.68 E-value=1.3e-06 Score=82.17 Aligned_cols=123 Identities=8% Similarity=-0.006 Sum_probs=80.0
Q ss_pred HHHhhhhhHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhhhhccccccCcch
Q 018373 208 IASLAELPGLILSAIIVDKIGRKLSMVLMFVSACIFLLPLVFHQSAVVTTVLLFGVRMCVTGTITVATIYAPEIYPTSAR 287 (357)
Q Consensus 208 i~~~~~~~~~~~~~~l~d~~GRR~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ElfPt~~R 287 (357)
...++..++.++.+++.||+|||+.+..+..+.++......+.++.......-+...+......+....+..|.|| +.|
T Consensus 52 ~~~~~~~l~~~~~g~l~dr~G~r~~l~~~~~l~~~~~~~~~~a~~~~~ll~~r~l~Gig~~~~~~~~~~~~~~~~~-~~~ 130 (393)
T PRK09705 52 LPVVTMGGLALAGSWLHQHVSERRSVAISLLLIAVGALMRELYPQSALLLSSALLGGVGIGIIQAVMPSVIKRRFQ-QRT 130 (393)
T ss_pred HHHHHHHHHhhhhHHHHHHhCchHHHHHHHHHHHHHHHHHHHCcchHHHHHHHHHHHhHHHHHhhhhhHHHHHHcc-ccc
Confidence 3345667888999999999999999999888877776665553332221111122222222233445567889998 679
Q ss_pred hhHHHHHHHHHHHHHhHHHHHHHHHHhhc-chhhHHHHHHHHHHH
Q 018373 288 TTGFGVASSLGKVGGMVCPLVAVGLVTSC-HLRLAVILFEVVFVL 331 (357)
Q Consensus 288 ~~~~~~~~~~~~l~~~~~p~~~~~l~~~~-~~~~~~~~~~~~~~~ 331 (357)
+.++|+.......++.+++.+.+.+.+.. ++...+.+++...++
T Consensus 131 ~~~~g~~~~~~~~g~~~g~~~~~~l~~~~~~w~~~~~~~~~~~~~ 175 (393)
T PRK09705 131 PLVMGLWSAALMGGGGLGAAITPWLVQHSETWYQTLAWWALPAVV 175 (393)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 99999988887788888887777666653 333444444444333
No 168
>TIGR00899 2A0120 sugar efflux transporter. This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria.
Probab=98.68 E-value=1.6e-06 Score=80.64 Aligned_cols=137 Identities=15% Similarity=0.085 Sum_probs=81.9
Q ss_pred HHhhhhhHHHHHHHHHHhhchhHHHHH-HHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhhhhccccccCcch
Q 018373 209 ASLAELPGLILSAIIVDKIGRKLSMVL-MFVSACIFLLPLVFHQSAVVTTVLLFGVRMCVTGTITVATIYAPEIYPTSAR 287 (357)
Q Consensus 209 ~~~~~~~~~~~~~~l~d~~GRR~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ElfPt~~R 287 (357)
..+...+..++.+.+.||+|||+.++. +.....+........++.....+..+..........+....+..|..|.+.|
T Consensus 42 ~~~~~~~~~~~~g~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~p~~~~~~~~~~~~~~~ 121 (375)
T TIGR00899 42 SAIVGIAVSQLLATRSDYQGDRKGLILFCCLLAALACLLFAWNRNYFLLLVLGVLLSSFASTANPQLFALAREHADRTGR 121 (375)
T ss_pred HHHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhhcch
Confidence 345566777888999999999887554 3333333332223322221111111111111122334456677888888877
Q ss_pred hhH--HHHHHHHHHHHHhHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHHhhccccccC
Q 018373 288 TTG--FGVASSLGKVGGMVCPLVAVGLVTSCHLRLAVILFEVVFVLAIASSLLFPFETMG 345 (357)
Q Consensus 288 ~~~--~~~~~~~~~l~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~pet~~ 345 (357)
+.+ .+.....+.++..++|.+...+.+..++...+++.+.+.++..+..++..||.+.
T Consensus 122 ~~~~~~~~~~~~~~~g~~ig~~~~~~l~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~ 181 (375)
T TIGR00899 122 EAVMFSSVMRAQISLAWVIGPPLAFWLALGFGFTVMFLTAALAFVLCGVLVWLFLPSYPR 181 (375)
T ss_pred hhHHHHHHHHHHHhHHHHHhhhHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhCCCccc
Confidence 755 5666666678888888887777666666667777777766666666666676543
No 169
>PRK09952 shikimate transporter; Provisional
Probab=98.68 E-value=6.8e-07 Score=85.40 Aligned_cols=135 Identities=18% Similarity=0.034 Sum_probs=82.1
Q ss_pred HHhhhhhHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHhhhhh----HHHHHHH----HHHHHHhhhhhhhhhhhccc
Q 018373 209 ASLAELPGLILSAIIVDKIGRKLSMVLMFVSACIFLLPLVFHQSA----VVTTVLL----FGVRMCVTGTITVATIYAPE 280 (357)
Q Consensus 209 ~~~~~~~~~~~~~~l~d~~GRR~~~~~~~~~~~i~~~~~~~~~~~----~~~~~~~----~~~~~~~~~~~~~~~~~~~E 280 (357)
..+++.+|.++.|++.||+|||+.+..+..+.++......+..+. .+....+ +...+...+.++....+.+|
T Consensus 73 ~~~~~~~g~~~~G~l~Dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~~~e 152 (438)
T PRK09952 73 GFLFRPLGGVVFGHFGDRLGRKRMLMLTVWMMGIATALIGLLPSFSTIGWWAPVLLVTLRAIQGFAVGGEWGGAALLAVE 152 (438)
T ss_pred HHHHHhhHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHH
Confidence 345567888999999999999999998887776665554442221 1111111 12222223344566789999
Q ss_pred cccCcchhhHHHHHHHHHHHHHhHHHHHHHHHHh--------hcchhhHHHHHHHHHHHHHHHHhhcccccc
Q 018373 281 IYPTSARTTGFGVASSLGKVGGMVCPLVAVGLVT--------SCHLRLAVILFEVVFVLAIASSLLFPFETM 344 (357)
Q Consensus 281 lfPt~~R~~~~~~~~~~~~l~~~~~p~~~~~l~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~pet~ 344 (357)
.+|.+.|++..+.......++..+++.+...+.. ..++..++++.++..++ .+.....+||++
T Consensus 153 ~~p~~~rg~~~~~~~~g~~~G~~l~~~~~~~l~~~~~~~~~~~~gWr~~f~~~~~~~l~-~~~l~~~~~es~ 223 (438)
T PRK09952 153 SAPKNKKAFYSSGVQVGYGVGLLLSTGLVSLISMMTTDEQFLSWGWRIPFLFSIVLVLI-ALWVRNGMEESA 223 (438)
T ss_pred hCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHhhccChHHHHHHHHHHHHH-HHHHHHhCCCCh
Confidence 9999999998888877666766666554443321 23444455554444333 233334567764
No 170
>PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily. EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function [].
Probab=98.65 E-value=2.8e-06 Score=82.41 Aligned_cols=133 Identities=17% Similarity=0.177 Sum_probs=85.6
Q ss_pred HHhhhhhHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHH---h-h-hhhHHHHHHHHHHHHHhhhhhhhhhhhcccccc
Q 018373 209 ASLAELPGLILSAIIVDKIGRKLSMVLMFVSACIFLLPLV---F-H-QSAVVTTVLLFGVRMCVTGTITVATIYAPEIYP 283 (357)
Q Consensus 209 ~~~~~~~~~~~~~~l~d~~GRR~~~~~~~~~~~i~~~~~~---~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ElfP 283 (357)
..+-.++..+++|.++||+.||+.++.+.....+....+. . . .+.+...++.+....+.....+...++.+|+.|
T Consensus 54 ~~LP~~Llsl~aG~laDr~drrrili~~~~~~~~~~~~L~~l~~~~~~~~~~Ll~~~fl~g~~~a~~~PA~~A~ip~lV~ 133 (524)
T PF05977_consen 54 STLPILLLSLFAGALADRFDRRRILILSQLLRALVALLLAVLAFFGLLSPWLLLILTFLLGIGSAFFNPAWQAIIPELVP 133 (524)
T ss_pred HHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 3444566678899999999999999987776554333222 1 1 122222222222222222334567889999999
Q ss_pred CcchhhHHHHHHHHHHHHHhHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHHhhccc
Q 018373 284 TSARTTGFGVASSLGKVGGMVCPLVAVGLVTSCHLRLAVILFEVVFVLAIASSLLFPF 341 (357)
Q Consensus 284 t~~R~~~~~~~~~~~~l~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~p 341 (357)
.+.-..++++.....++...++|.+.+.+....+....+.+-++..+++.++.....+
T Consensus 134 ~~~L~~A~al~s~~~niar~iGPalgG~Lva~~G~~~~f~inalsfl~~i~~l~~~~~ 191 (524)
T PF05977_consen 134 KEDLPAANALNSISFNIARIIGPALGGILVAFFGAAAAFLINALSFLISILALLRWKP 191 (524)
T ss_pred HhhHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc
Confidence 9999999999988888888889988887777666555555545444444333333333
No 171
>PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins. Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes [].
Probab=98.65 E-value=1.3e-06 Score=85.06 Aligned_cols=124 Identities=15% Similarity=0.172 Sum_probs=76.6
Q ss_pred HHhhhhhHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHh-hhhhHHHHHHHHHHHHHhhhhhhhhhhhccccccCcch
Q 018373 209 ASLAELPGLILSAIIVDKIGRKLSMVLMFVSACIFLLPLVF-HQSAVVTTVLLFGVRMCVTGTITVATIYAPEIYPTSAR 287 (357)
Q Consensus 209 ~~~~~~~~~~~~~~l~d~~GRR~~~~~~~~~~~i~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ElfPt~~R 287 (357)
..+...++..+.|.+.|.+|||..++.+.++..+-.+.... ++.+.......+. .+ ..+...+....++|+.|.+.|
T Consensus 87 ~~l~~av~~~~~G~LSDlfGRr~~~i~g~~l~vvG~Iv~atA~~~~~~iag~~l~-Gv-gaG~~~~~~~~isEl~p~k~R 164 (599)
T PF06609_consen 87 WTLASAVSFPFVGRLSDLFGRRYFFIIGSLLGVVGSIVCATAQNMNTFIAGMVLY-GV-GAGVQELAALAISELVPNKWR 164 (599)
T ss_pred HHHHHHHHHHhhHHHHHHhcchHHHHHHHHHHHhHHHHhhcCCcHHHHHHHHHHH-HH-hhHHHHHHHHHHHHhcccchh
Confidence 45667777888999999999999999888776665554433 2222222111111 11 122223556678999999999
Q ss_pred hhHHHHHHHHHHHHHhHHHHHHHHHHhhcchhhHHHHHHHHHHHHHH
Q 018373 288 TTGFGVASSLGKVGGMVCPLVAVGLVTSCHLRLAVILFEVVFVLAIA 334 (357)
Q Consensus 288 ~~~~~~~~~~~~l~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 334 (357)
..+.++.....-.....+|.+...+..+.++-+.++++.++..++.+
T Consensus 165 ~~~~~~~~~~~i~~~~~~~~ia~~~~~~~~WRw~~~~~~i~~~i~~v 211 (599)
T PF06609_consen 165 GLGLAIASIPFIITTWISPLIAQLFAAHSGWRWIFYIFIIWSGIALV 211 (599)
T ss_pred hhHhHHHHHHHHhhhcccHHHHHHhccCCCcchHHHHHHHHHHHHHH
Confidence 99888776544444445666655443333455667776666655543
No 172
>TIGR00885 fucP L-fucose:H+ symporter permease. This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector.
Probab=98.64 E-value=3.6e-06 Score=79.69 Aligned_cols=107 Identities=20% Similarity=0.102 Sum_probs=71.4
Q ss_pred HHHHhhhhhHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHhh---hhhHHHHHHHHHHHHHhhhhhhhhhhhcccccc
Q 018373 207 FIASLAELPGLILSAIIVDKIGRKLSMVLMFVSACIFLLPLVFH---QSAVVTTVLLFGVRMCVTGTITVATIYAPEIYP 283 (357)
Q Consensus 207 ~i~~~~~~~~~~~~~~l~d~~GRR~~~~~~~~~~~i~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ElfP 283 (357)
....++..++.+..+++.||+|||+.++.+..+.++....+... .+........+...+......+....+.+|+.|
T Consensus 45 s~~~~g~~i~~~~~g~l~~r~G~r~~~~~g~~l~~~g~~l~~~~~~~~~~~~~l~~~~l~G~g~g~~~~~~~~~~~~~~~ 124 (410)
T TIGR00885 45 SAFYGGYFIMAIPAAIFMKKLSYKAGILLGLFLYALGAFLFWPAAEIMNYTLFLVGLFILTAGLGFLETAANPYILVMGP 124 (410)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHhhHHHHHhhhhHHHHHHCC
Confidence 34566778888999999999999999988877665554433221 111111111122222212223344567888999
Q ss_pred CcchhhHHHHHHHHHHHHHhHHHHHHHHHH
Q 018373 284 TSARTTGFGVASSLGKVGGMVCPLVAVGLV 313 (357)
Q Consensus 284 t~~R~~~~~~~~~~~~l~~~~~p~~~~~l~ 313 (357)
.+.|++..++.+....+++.++|.+...+.
T Consensus 125 ~~~~~~~~~~~~~~~~lG~~~g~~i~~~l~ 154 (410)
T TIGR00885 125 ESTATRRLNLAQSFNPFGSIIGMVVAQQLI 154 (410)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999989988876654
No 173
>PRK10207 dipeptide/tripeptide permease B; Provisional
Probab=98.62 E-value=1e-05 Score=78.35 Aligned_cols=97 Identities=12% Similarity=-0.001 Sum_probs=55.4
Q ss_pred hhhHHHHHHHHHHhhchhHH-------HHHHHHHHHHHHHHH-----Hh-hh---hhHHHHH-HHHHHHHHhhhhhhhhh
Q 018373 213 ELPGLILSAIIVDKIGRKLS-------MVLMFVSACIFLLPL-----VF-HQ---SAVVTTV-LLFGVRMCVTGTITVAT 275 (357)
Q Consensus 213 ~~~~~~~~~~l~d~~GRR~~-------~~~~~~~~~i~~~~~-----~~-~~---~~~~~~~-~~~~~~~~~~~~~~~~~ 275 (357)
.++...+.+.+.||+|||+. +.++.+++++.+..+ .. .. .+.+..+ .++.....-....+...
T Consensus 322 iii~~pl~~~l~~rl~~r~~~~~~~~k~~~G~~l~~~~~~~~~~~~~~~~~~~~~~s~~~~i~~~~l~g~Ge~~~~~~g~ 401 (489)
T PRK10207 322 VVVASPILAGIYTHLGSKGKDLSMPMKFTLGMFLCSLGFLTAAAAGMWFADAQGLTSPWFIVLVYLFQSLGELFISALGL 401 (489)
T ss_pred HHHHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCccCHHHHHHHHHHHHHHHHHHhHHHH
Confidence 34555667899999999862 444444443333211 11 11 1112111 22222222222334557
Q ss_pred hhccccccCcchhhHHHHHHHHHHHHHhHHHHHH
Q 018373 276 IYAPEIYPTSARTTGFGVASSLGKVGGMVCPLVA 309 (357)
Q Consensus 276 ~~~~ElfPt~~R~~~~~~~~~~~~l~~~~~p~~~ 309 (357)
.++.+.-|.+.++.++|+.+....+++.++..+.
T Consensus 402 ~~~~~~aP~~~~g~~~g~~~l~~~ig~~lg~~l~ 435 (489)
T PRK10207 402 AMIAALVPQHLMGFILGMWFLTQAAAFLLGGYVA 435 (489)
T ss_pred HHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7788889999999999999877777776666554
No 174
>PRK11010 ampG muropeptide transporter; Validated
Probab=98.62 E-value=3.6e-06 Score=81.64 Aligned_cols=129 Identities=15% Similarity=0.170 Sum_probs=84.0
Q ss_pred hHHHHHHHHHHhh-----chhHH-HHHHHHHHHHHHHHHHhh--hhh-HHHHHHHHHHHHHhhhhhhhhhhhccccccCc
Q 018373 215 PGLILSAIIVDKI-----GRKLS-MVLMFVSACIFLLPLVFH--QSA-VVTTVLLFGVRMCVTGTITVATIYAPEIYPTS 285 (357)
Q Consensus 215 ~~~~~~~~l~d~~-----GRR~~-~~~~~~~~~i~~~~~~~~--~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ElfPt~ 285 (357)
++.++.+.++||+ |||+. +..+.+...+....+.+. ..+ ...........++..........+.+|.+|.+
T Consensus 60 ~~~~l~gpl~Dr~~~~~~Grrr~~ll~~~i~~~~~~~~~a~~~~~~~l~~l~~~~~l~~~~~a~~~i~~~a~~~~~~~~~ 139 (491)
T PRK11010 60 VFKFLWSPLMDRYTPPFLGRRRGWLLATQLLLLVAIAAMGFLEPGTQLRWLAALAVVIAFCSASQDIVFDAWKTDVLPAE 139 (491)
T ss_pred HHHHHHHHHHHcccccCCCCchHHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChh
Confidence 5778899999999 99985 545555554444333331 111 11111222222222233345678999999999
Q ss_pred chhhHHHHHHHHHHHHHhHHHHHHHHHHh-hcchhhHHHHHHHHHHHHHHHHhhcccccc
Q 018373 286 ARTTGFGVASSLGKVGGMVCPLVAVGLVT-SCHLRLAVILFEVVFVLAIASSLLFPFETM 344 (357)
Q Consensus 286 ~R~~~~~~~~~~~~l~~~~~p~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~pet~ 344 (357)
.|+++.++.....+++..+++.+...+.+ ..++...+++.++..++..+..++ .||+.
T Consensus 140 ~rg~~~~i~~~g~~lG~llg~~l~~~l~~~~~GWr~~f~i~a~l~ll~~l~~~~-~~e~~ 198 (491)
T PRK11010 140 ERGAGAAISVLGYRLAMLVSGGLALWLADRYLGWQGMYWLMAALLIPCIIATLL-APEPT 198 (491)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHHHHh-cCCCc
Confidence 99999999999889999888888777766 345666677777666666554444 57764
No 175
>PRK12382 putative transporter; Provisional
Probab=98.62 E-value=4e-06 Score=78.75 Aligned_cols=111 Identities=11% Similarity=-0.049 Sum_probs=68.9
Q ss_pred HHHhhhhhHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHH---Hh-hh--hhHHHH--HHHHHHHHHhhhhhhhhhhhcc
Q 018373 208 IASLAELPGLILSAIIVDKIGRKLSMVLMFVSACIFLLPL---VF-HQ--SAVVTT--VLLFGVRMCVTGTITVATIYAP 279 (357)
Q Consensus 208 i~~~~~~~~~~~~~~l~d~~GRR~~~~~~~~~~~i~~~~~---~~-~~--~~~~~~--~~~~~~~~~~~~~~~~~~~~~~ 279 (357)
...+...++.++.|+++||+|||+.++.+.+.+.+..+.. .. .. ...... +.-+..........+....+.+
T Consensus 59 ~~~~~~~i~~~~~G~l~Dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~ 138 (392)
T PRK12382 59 IQFLATVLTRGYAGRLADQYGAKRSALQGMLACGLAGLAYLLAAILPVSAPFKFALLVVGRLILGFGESQLLTGALTWGL 138 (392)
T ss_pred HHHHHHHHHhhhhhHHHHhhcchHHHHHHHHHHHHHHHHHHhhhccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456667778899999999999999988766554432211 11 11 111111 1111111111122234456778
Q ss_pred ccccCcchhhHHHHHHHHHHHHHhHHHHHHHHHHhhcch
Q 018373 280 EIYPTSARTTGFGVASSLGKVGGMVCPLVAVGLVTSCHL 318 (357)
Q Consensus 280 ElfPt~~R~~~~~~~~~~~~l~~~~~p~~~~~l~~~~~~ 318 (357)
|.+|.+.|+++.++......++..++|.+...+.+..++
T Consensus 139 ~~~~~~~r~~a~~~~~~~~~~g~~~g~~~~~~l~~~~g~ 177 (392)
T PRK12382 139 GLVGPKHSGKVMSWNGMAMYGALAAGAPLGLLLHSHFGF 177 (392)
T ss_pred hhCCccccchhhhHHHHHHHHHHHHHHHHHHHHHhccCh
Confidence 999999999999998877777888888887766555443
No 176
>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated
Probab=98.62 E-value=2.8e-06 Score=90.90 Aligned_cols=108 Identities=12% Similarity=-0.001 Sum_probs=73.1
Q ss_pred HHHhhhhhHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHh---hhhhHHHHHHHHHHHHHhhhhhhhhhhhccccccC
Q 018373 208 IASLAELPGLILSAIIVDKIGRKLSMVLMFVSACIFLLPLVF---HQSAVVTTVLLFGVRMCVTGTITVATIYAPEIYPT 284 (357)
Q Consensus 208 i~~~~~~~~~~~~~~l~d~~GRR~~~~~~~~~~~i~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ElfPt 284 (357)
+..+...++.+++|+++||+|||+.++.+.++..+..+.... ..+.....+..++..+......+..+.+.+|++|.
T Consensus 55 ~~~l~~~l~~~~~G~l~Dr~grk~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~ 134 (1146)
T PRK08633 55 LFLLPFLLLSSPAGFLADKFSKNRVIRIVKLFEVGLTLLIVLAYYLGWFWLAFAVTFLLGAQSAIYSPAKYGIIPELVGK 134 (1146)
T ss_pred HHHHHHHHHhhhHhhhcccccHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHhhchHHHhhhHHhcCc
Confidence 345556788889999999999999998776554433322221 11211212222222222233345677899999999
Q ss_pred cchhhHHHHHHHHHHHHHhHHHHHHHHHHhh
Q 018373 285 SARTTGFGVASSLGKVGGMVCPLVAVGLVTS 315 (357)
Q Consensus 285 ~~R~~~~~~~~~~~~l~~~~~p~~~~~l~~~ 315 (357)
+.|++++|+......++..++|.+...+...
T Consensus 135 ~~r~~~~~~~~~~~~ig~~lg~~l~~~l~~~ 165 (1146)
T PRK08633 135 ENLSRANGLLEAFTIVAILAGTALFSFLFES 165 (1146)
T ss_pred ccchhhhhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999998888776654
No 177
>PTZ00207 hypothetical protein; Provisional
Probab=98.60 E-value=4.6e-06 Score=81.58 Aligned_cols=136 Identities=10% Similarity=0.063 Sum_probs=70.7
Q ss_pred HHHHhhhhhHHHHHHHHHHhhchhH--------H-HHHHHHHHHHHHHHHHhhhh-hHHHHHHHHHHHHHhhhhhhhhhh
Q 018373 207 FIASLAELPGLILSAIIVDKIGRKL--------S-MVLMFVSACIFLLPLVFHQS-AVVTTVLLFGVRMCVTGTITVATI 276 (357)
Q Consensus 207 ~i~~~~~~~~~~~~~~l~d~~GRR~--------~-~~~~~~~~~i~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 276 (357)
.+.++.+.+|-+.+|+.....-||+ . +.+..+ +.+..+.+..... ..+. +-.+...++....+++...
T Consensus 398 sL~si~~~~GRl~~g~~~~~~~~~~~~~r~prt~~l~~~~~-~~~~~lll~~~~p~~~L~-~~~~lvg~~~G~~~~~~~~ 475 (591)
T PTZ00207 398 VLNGVGSAVGRLCMSYFEIWSQKRRAEDRVPITIALFIPSV-CIITMLTLFLTLPKAALP-LPYFIAAFANGFMAATIAL 475 (591)
T ss_pred hhhhHHHHhhHHHHHHHHHHHHhhccccccchhHHHHHHHH-HHHHHHHHHHHCCccHhH-HHHHHHHHHhhHhHHHHHH
Confidence 3456777777777776653333322 1 222222 2222222222222 2221 2222333444556788889
Q ss_pred hccccccCcchhhHHHHHHHHHHHHHhHH-HHHHHHHHhhc----c---------hhhHHHHHHHHHHHHHHHHhhcccc
Q 018373 277 YAPEIYPTSARTTGFGVASSLGKVGGMVC-PLVAVGLVTSC----H---------LRLAVILFEVVFVLAIASSLLFPFE 342 (357)
Q Consensus 277 ~~~ElfPt~~R~~~~~~~~~~~~l~~~~~-p~~~~~l~~~~----~---------~~~~~~~~~~~~~~~~~~~~~~~pe 342 (357)
.++|+|- +.=++=..++...+-+++.+- -+++..+.+.- + ...++++.+++++++.+....+--+
T Consensus 476 i~selFg-k~~g~~yN~~~~a~pigs~~~n~~l~G~~Yd~ea~k~~~~~C~G~~C~~~~~~v~~~~~~~g~~~s~~l~~R 554 (591)
T PTZ00207 476 VTRTIFA-KDPAKHYNFCFLGSVLSAIFLNRLLYGEWYTQQADKLGQDVCTERVCVVMPLAFLLGLSFLAFITSTYVHLQ 554 (591)
T ss_pred HHHHHhc-cchHHHhhHHhHHHHHHHHHHHHHHHHHHHHHHHhhCCCCeeCCceeeHhHHHHHHHHHHHHHHHHhheeee
Confidence 9999999 666665555555555554443 23333333211 1 1247888888888887776655445
Q ss_pred ccC
Q 018373 343 TMG 345 (357)
Q Consensus 343 t~~ 345 (357)
|+.
T Consensus 555 ~r~ 557 (591)
T PTZ00207 555 YRR 557 (591)
T ss_pred hHH
Confidence 553
No 178
>PTZ00207 hypothetical protein; Provisional
Probab=98.60 E-value=7.7e-06 Score=80.06 Aligned_cols=122 Identities=14% Similarity=0.157 Sum_probs=71.6
Q ss_pred HHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHhh------hhhHHHHHHHHHHHHHhhhhhhhhhhhccccccCcchhh
Q 018373 216 GLILSAIIVDKIGRKLSMVLMFVSACIFLLPLVFH------QSAVVTTVLLFGVRMCVTGTITVATIYAPEIYPTSARTT 289 (357)
Q Consensus 216 ~~~~~~~l~d~~GRR~~~~~~~~~~~i~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ElfPt~~R~~ 289 (357)
..+.+|++.||+|||+.++++.++.++..+..... .+.+...+..+...+.....++.......+.|| +.|++
T Consensus 77 ~~lp~G~L~Dr~G~R~vllig~ll~~iG~ll~ala~~~~i~~s~~~l~l~r~l~G~G~~~~~~~~~~~i~~~Fp-~~RG~ 155 (591)
T PTZ00207 77 FLLPYSFIYDYLGPRPIFVLSMTVFCLGTLLFALTFQEVIEGSVVRLSVYNGLMTLGCMLFDLGAVVTVLSVFP-SNRGA 155 (591)
T ss_pred HHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCh-hhhHH
Confidence 44568999999999999998887766655444432 111111111111222212223445566788898 78999
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHHhhc
Q 018373 290 GFGVASSLGKVGGMVCPLVAVGLVTSCHLRLAVILFEVVFVLAIASSLLF 339 (357)
Q Consensus 290 ~~~~~~~~~~l~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 339 (357)
++|+......+++.+.+.+...+... +....+++.++..++..++.+++
T Consensus 156 a~Gi~~~~~gLGsaI~~~l~~~l~~~-~~~~~fl~l~vl~~vv~ll~~~~ 204 (591)
T PTZ00207 156 VVAIMKTFTGLGSAILGSIQLAFFSD-NTSAYFFFLMSFALVVGILAIVF 204 (591)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-hHHHHHHHHHHHHHHHHHHHHhh
Confidence 99999999999886544444433332 23334555555555544444443
No 179
>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional
Probab=98.58 E-value=4.7e-06 Score=89.14 Aligned_cols=135 Identities=10% Similarity=-0.053 Sum_probs=82.7
Q ss_pred HHhhhhhHHHHHHHHHHhhchhHHHHHHHHHHHHHHH--HHHh-hhhhHHHHHHHHHHHHHhhhhhhhhhhhccccccCc
Q 018373 209 ASLAELPGLILSAIIVDKIGRKLSMVLMFVSACIFLL--PLVF-HQSAVVTTVLLFGVRMCVTGTITVATIYAPEIYPTS 285 (357)
Q Consensus 209 ~~~~~~~~~~~~~~l~d~~GRR~~~~~~~~~~~i~~~--~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ElfPt~ 285 (357)
..+..++..++.|.++||+|||+++.....+...+.. .+.+ ..+.....+..++.........+....+.+|++|.+
T Consensus 61 ~~l~~~l~~~~~G~laDr~~rk~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~l~gi~~a~~~p~~~a~l~~~~~~~ 140 (1140)
T PRK06814 61 FILPFFIFSALAGQLADKYDKAKLAKILKFAEIGIAALAIYGFHLNSVPLLFAALFLMGIHSALFGPIKYSILPDHLNKD 140 (1140)
T ss_pred HHHHHHHHhhhHHhhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhchHHHHhhHhhcCcc
Confidence 3455567788899999999999976432222111111 1111 122222222222222232334567888999999999
Q ss_pred chhhHHHHHHHHHHHHHhHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHHhhcccccc
Q 018373 286 ARTTGFGVASSLGKVGGMVCPLVAVGLVTSCHLRLAVILFEVVFVLAIASSLLFPFETM 344 (357)
Q Consensus 286 ~R~~~~~~~~~~~~l~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~pet~ 344 (357)
.|+.++|+.+....++..++|.+...+....++...+ +..+...+..++..+..|+++
T Consensus 141 ~~~~a~~~~~~~~~ig~~igp~l~g~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 198 (1140)
T PRK06814 141 ELLGANALVEAGTFIAILLGTIIGGLATISGNFVILV-ALLMGIAVLGWLASLFIPKTG 198 (1140)
T ss_pred ccchhhHHHHHHHHHHHHHHHHHHHHHHhccccHHHH-HHHHHHHHHHHHHHhhCCCCC
Confidence 9999999999999999999999998887765544333 333333333344444455553
No 180
>KOG0254 consensus Predicted transporter (major facilitator superfamily) [General function prediction only]
Probab=98.57 E-value=1.4e-06 Score=84.98 Aligned_cols=137 Identities=23% Similarity=0.201 Sum_probs=88.6
Q ss_pred HHHHhhhhhHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhhhhccccccCcc
Q 018373 207 FIASLAELPGLILSAIIVDKIGRKLSMVLMFVSACIFLLPLVFHQSAVVTTVLLFGVRMCVTGTITVATIYAPEIYPTSA 286 (357)
Q Consensus 207 ~i~~~~~~~~~~~~~~l~d~~GRR~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ElfPt~~ 286 (357)
....++..++.++.+.+.|++|||+.++.+.+...+..+......+.....+--+...+...+...+...|.+|+-|++.
T Consensus 96 s~~~lga~~g~l~~g~l~d~~GRk~~l~~~~~~~~iG~ii~~~a~~~~~l~~GR~l~G~g~G~~~~~~piy~sEiap~~~ 175 (513)
T KOG0254|consen 96 SILNLGALVGSLLAGRLGDRIGRKKTLLLAVVLFLIGAIIIALAPSWYQLIVGRILTGLGVGGASVLAPVYISEIAPAHI 175 (513)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhccchhhhhhcchhhHhhcCChhh
Confidence 45578889999999999999999999988877665555444443322211111111112222233467899999999999
Q ss_pred hhhHHHHHHHHHHHHHhHHHHHHHHHHhhc--chhhHHHHHHHHHHHHHHHHhhccccccC
Q 018373 287 RTTGFGVASSLGKVGGMVCPLVAVGLVTSC--HLRLAVILFEVVFVLAIASSLLFPFETMG 345 (357)
Q Consensus 287 R~~~~~~~~~~~~l~~~~~p~~~~~l~~~~--~~~~~~~~~~~~~~~~~~~~~~~~pet~~ 345 (357)
|+.-.+.......+|..++ ++..+..++. ++..++.+..+.+++..+. .++.||+..
T Consensus 176 RG~l~~~~~l~~~~Gi~~~-~~~~~~~~~~~~~Wr~~~~~~~i~~~~~~~~-~~~~pesp~ 234 (513)
T KOG0254|consen 176 RGTLVSLYQLFITIGILLG-YCINYGTSKVYAGWRIPLGLALIPAVILALG-MLFLPESPR 234 (513)
T ss_pred hHHHHHHHHHHHHHHHHHH-HHHhhhhccCCccHHHHHHHHHHHHHHHHHH-HHhCCCChH
Confidence 9999998887777555554 5555444432 3334455556666666666 667788654
No 181
>KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]
Probab=98.57 E-value=2.9e-06 Score=80.61 Aligned_cols=137 Identities=18% Similarity=0.163 Sum_probs=81.1
Q ss_pred HHHhhhhhHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHhhh-hhHHHH-HH-HHHHHHHhhhhhhhhhhhccccccC
Q 018373 208 IASLAELPGLILSAIIVDKIGRKLSMVLMFVSACIFLLPLVFHQ-SAVVTT-VL-LFGVRMCVTGTITVATIYAPEIYPT 284 (357)
Q Consensus 208 i~~~~~~~~~~~~~~l~d~~GRR~~~~~~~~~~~i~~~~~~~~~-~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~ElfPt 284 (357)
+..+++++|+++.+.++||+|||..+.++.+......+.+.... .+.... ++ =+..+.......+...+|..|+-|+
T Consensus 68 ~f~iG~~~Gs~~~~~la~~~GRK~~l~~~~~l~~~~~~~~~~s~~~~~~e~li~GR~i~Gl~~gl~~~~~pmyl~E~sP~ 147 (485)
T KOG0569|consen 68 IFFIGGMIGSFSSGLLADRFGRKNALLLSNLLAVLAALLMGLSKSAPSFEMLILGRLIVGLACGLSTGLVPMYLTEISPK 147 (485)
T ss_pred HHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhHHHHHHHHHHHhhcChh
Confidence 34577899999999999999999888877665554444333211 111100 10 0111111112235678899999999
Q ss_pred cchhhHHHHHHHHHHHHHhHHHHH-HHHHHhhcchhhHHHHH-HHHHHHHHHHHhhccccccC
Q 018373 285 SARTTGFGVASSLGKVGGMVCPLV-AVGLVTSCHLRLAVILF-EVVFVLAIASSLLFPFETMG 345 (357)
Q Consensus 285 ~~R~~~~~~~~~~~~l~~~~~p~~-~~~l~~~~~~~~~~~~~-~~~~~~~~~~~~~~~pet~~ 345 (357)
+.|+....+......++..++..+ .+.++.+. ..|++++. ..+..+..++.+.+.||+.+
T Consensus 148 ~~RG~~g~~~~~~~~~g~ll~~~~~l~~ilGt~-~~W~~l~~~~~i~~~~~l~~l~~~PESPk 209 (485)
T KOG0569|consen 148 NLRGALGTLLQIGVVIGILLGQVLGLPSLLGTE-DLWPYLLAFPLIPALLQLALLPFLPESPK 209 (485)
T ss_pred hhccHHHHHHHHHHHHHHHHHHHHccHHhcCCC-cchHHHHHHHHHHHHHHHHHHhcCCCCcc
Confidence 999999888887777776666333 34444332 22344332 23333444555566789754
No 182
>PRK10133 L-fucose transporter; Provisional
Probab=98.52 E-value=1.4e-05 Score=76.31 Aligned_cols=151 Identities=14% Similarity=0.062 Sum_probs=86.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCCCcccccCCCCCchhhHHHHHHHHhhhhhHHHHHHHHHHhhchh
Q 018373 151 KLIRTTLLLWVLFFANVFSYYGAVLLTSKLSSGDNKCGSKVLHADKSKDNSLYVDVFIASLAELPGLILSAIIVDKIGRK 230 (357)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~d~~GRR 230 (357)
++..+...+..+++...+.........|.+.++. ..++...-.......++..++.++.+.++||+|||
T Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~i~~~~-----------~~s~~~~gl~~~~~~~g~~i~~~~~g~l~dr~G~r 91 (438)
T PRK10133 23 SYIIPFALLCSLFFLWAVANNLNDILLPQFQQAF-----------TLTNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYK 91 (438)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcH
Confidence 3444444444555544444444555556553211 11111212223445677788899999999999999
Q ss_pred HHHHHHHHHHHHHHHHHH---hhhhhHHHHHHHHHHHHHhhhhhhhhhhhccccccCcchhhHHHHHHHHHHHHHhHHHH
Q 018373 231 LSMVLMFVSACIFLLPLV---FHQSAVVTTVLLFGVRMCVTGTITVATIYAPEIYPTSARTTGFGVASSLGKVGGMVCPL 307 (357)
Q Consensus 231 ~~~~~~~~~~~i~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ElfPt~~R~~~~~~~~~~~~l~~~~~p~ 307 (357)
+.+..+..+..+..+... ...+........+...+...........+..|..|.+.|....++.+....++..++|.
T Consensus 92 ~~l~~g~~~~~~~~~l~~~~~~a~~~~~ll~~r~l~G~g~g~~~~~~~~~v~~~~~~~~~~~~~s~~~~~~~~G~~~g~~ 171 (438)
T PRK10133 92 AGIITGLFLYALGAALFWPAAEIMNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVV 171 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhhHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHH
Confidence 999888776655544321 11122111111222222222233455666778888887877888888888888888887
Q ss_pred HHHHH
Q 018373 308 VAVGL 312 (357)
Q Consensus 308 ~~~~l 312 (357)
+...+
T Consensus 172 ~g~~l 176 (438)
T PRK10133 172 FGQSL 176 (438)
T ss_pred HHHHH
Confidence 75543
No 183
>KOG3764 consensus Vesicular amine transporter [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.50 E-value=9.1e-07 Score=80.32 Aligned_cols=141 Identities=18% Similarity=0.130 Sum_probs=104.6
Q ss_pred HHHHhhhhhHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhhhhccccccCcc
Q 018373 207 FIASLAELPGLILSAIIVDKIGRKLSMVLMFVSACIFLLPLVFHQSAVVTTVLLFGVRMCVTGTITVATIYAPEIYPTSA 286 (357)
Q Consensus 207 ~i~~~~~~~~~~~~~~l~d~~GRR~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ElfPt~~ 286 (357)
..-.+.+++.+.+.|.+.||+|+|..++++.+.+...-+.+.+.++.....+.=........+..+....+.++.||.+.
T Consensus 113 askA~~qllvnp~~G~l~~~iGy~ipm~~Gl~vmf~sTilFafg~sy~~l~vAR~LQgvgsA~~~tsglamlAd~f~~d~ 192 (464)
T KOG3764|consen 113 ASKALVQLLVNPFFGNLIDRIGYKIPMVAGLFVMFLSTILFAFGNSYPMLFVARSLQGVGSAFADTSGLAMLADVFPEDN 192 (464)
T ss_pred HHHHHHHHHhcccchhhHHHhccccHHHHHHHHHHHHHHHHHHcchhHHHHHHHHHhhhhHHHHHhhhHHHHHHHcccch
Confidence 34467788889999999999999999999988877776666664433221111111112222334456778999999977
Q ss_pred -hhhHHHHHHHHHHHHHhHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHHhhccccccCcc
Q 018373 287 -RTTGFGVASSLGKVGGMVCPLVAVGLVTSCHLRLAVILFEVVFVLAIASSLLFPFETMGRE 347 (357)
Q Consensus 287 -R~~~~~~~~~~~~l~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~pet~~~~ 347 (357)
|++++|+.-+...+|-.++|.+-..+.+..|...+|++.++++++..+..++.++.|+..+
T Consensus 193 er~~vmGialgfislG~lvgPpfGGilYe~~Gk~aPFlVL~~v~Lld~~L~l~vi~p~~~~~ 254 (464)
T KOG3764|consen 193 ERGSVMGIALGFISLGVLVGPPFGGILYEFAGKSAPFLVLAIVLLLDGALQLLVIEPTEMDP 254 (464)
T ss_pred hhhHHHHHHHHHHhccceecCCcccchHhhcCCcCcHHHHHHHHHHHHHHHHheeCccccCc
Confidence 6999999999999999999988877777778788999999999998888877766555443
No 184
>KOG2615 consensus Permease of the major facilitator superfamily [General function prediction only]
Probab=98.50 E-value=7.4e-07 Score=80.45 Aligned_cols=104 Identities=14% Similarity=0.203 Sum_probs=75.4
Q ss_pred HhhhhhHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhhhhccccccCcchhh
Q 018373 210 SLAELPGLILSAIIVDKIGRKLSMVLMFVSACIFLLPLVFHQSAVVTTVLLFGVRMCVTGTITVATIYAPEIYPTSARTT 289 (357)
Q Consensus 210 ~~~~~~~~~~~~~l~d~~GRR~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ElfPt~~R~~ 289 (357)
.+++.+.+..-|.+.||.|||+.++.+.++.+++........+-...+..=+.. -...+..++.-++++|+++.+.|+.
T Consensus 78 ~ilQ~~sS~~~G~~SD~yGRkpvll~c~~~va~s~ll~~~S~~F~afv~aR~l~-Gi~kgnl~v~rAiisdV~sek~r~l 156 (451)
T KOG2615|consen 78 SILQFISSPLWGCLSDRYGRKPVLLACLIGVALSYLLWALSRNFAAFVLARFLG-GIFKGNLSVIRAIISDVVSEKYRPL 156 (451)
T ss_pred HHHHHHhhhhhhhhhhhhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-hhccCchHHHHHHHHhhcChhhccc
Confidence 567888899999999999999999998888777555444333221111101111 1224556788999999999999999
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHh
Q 018373 290 GFGVASSLGKVGGMVCPLVAVGLVT 314 (357)
Q Consensus 290 ~~~~~~~~~~l~~~~~p~~~~~l~~ 314 (357)
+++.......+|-+++|.+-.++.+
T Consensus 157 ~ms~v~~a~~lGfilGPmIGgyla~ 181 (451)
T KOG2615|consen 157 GMSLVGTAFGLGFILGPMIGGYLAQ 181 (451)
T ss_pred eeeeeehhhhcchhhcchhhhHHHh
Confidence 9999988888888888877766655
No 185
>TIGR00883 2A0106 metabolite-proton symporter. This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc.
Probab=98.49 E-value=3.8e-06 Score=78.31 Aligned_cols=102 Identities=25% Similarity=0.242 Sum_probs=67.0
Q ss_pred hhhhhHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHhhhhh----HHHHHHHHH----HHHHhhhhhhhhhhhccccc
Q 018373 211 LAELPGLILSAIIVDKIGRKLSMVLMFVSACIFLLPLVFHQSA----VVTTVLLFG----VRMCVTGTITVATIYAPEIY 282 (357)
Q Consensus 211 ~~~~~~~~~~~~l~d~~GRR~~~~~~~~~~~i~~~~~~~~~~~----~~~~~~~~~----~~~~~~~~~~~~~~~~~Elf 282 (357)
+...++.++.|++.||+|||+.+..+.++..+.........+. .+....... ..+......+....+.+|.+
T Consensus 46 ~~~~i~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~~~~~~ 125 (394)
T TIGR00883 46 LARPLGAIVFGHFGDRIGRKKTLVITLLMMGIGTLLIGLLPSYATIGIWAPILLLLARLIQGFSLGGEWGGAALYLAEYA 125 (394)
T ss_pred HHhhhHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHhhCCChhhhHHHHHHHHHHHHHHHHhhccccccccHHHhhhcC
Confidence 3345678899999999999999988877766555444332211 111111111 11111223345677899999
Q ss_pred cCcchhhHHHHHHHHHHHHHhHHHHHHHHH
Q 018373 283 PTSARTTGFGVASSLGKVGGMVCPLVAVGL 312 (357)
Q Consensus 283 Pt~~R~~~~~~~~~~~~l~~~~~p~~~~~l 312 (357)
|.+.|+...++......++..+++.+...+
T Consensus 126 ~~~~r~~~~~~~~~~~~~G~~i~~~~~~~~ 155 (394)
T TIGR00883 126 PPGKRGFYGSFQQVGAPVGLLLAALTVLLL 155 (394)
T ss_pred CcccchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999888888888887665443
No 186
>TIGR00901 2A0125 AmpG-related permease.
Probab=98.47 E-value=7.1e-06 Score=75.93 Aligned_cols=128 Identities=19% Similarity=0.156 Sum_probs=79.9
Q ss_pred HHHHHHHHHhh-----chhHHH-HHHHHHHHHHHHHHHhh-hhhHH--HHHHHHHHHHHhhhhhhhhhhhccccccCcch
Q 018373 217 LILSAIIVDKI-----GRKLSM-VLMFVSACIFLLPLVFH-QSAVV--TTVLLFGVRMCVTGTITVATIYAPEIYPTSAR 287 (357)
Q Consensus 217 ~~~~~~l~d~~-----GRR~~~-~~~~~~~~i~~~~~~~~-~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~ElfPt~~R 287 (357)
.++.+.++||+ |||+.+ +.+.+..++....+.+. ..... .....+....+.....+....+.+|.+|.+.|
T Consensus 38 ~~~~g~~~Dr~~~~~~Grr~~~l~~~~~~~~~~~~~l~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~r 117 (356)
T TIGR00901 38 KFLWSPLVDTVYLPFFGRRRSWLVLTQVLLLSLLLILSFLVPSTDLPLLAGLAFLIAFFSATQDIALDAWRLEILSDEEL 117 (356)
T ss_pred HHHHHHHHhcccCCCCCccHHHHHHHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhhh
Confidence 67889999997 898875 44555555444333332 11111 11111111122222234557789999999999
Q ss_pred hhHHHHHHHHHHHHHhHHHHHHHHHHhhcc--------hhhHHHHHHHHHHHHHHHHhhcccccc
Q 018373 288 TTGFGVASSLGKVGGMVCPLVAVGLVTSCH--------LRLAVILFEVVFVLAIASSLLFPFETM 344 (357)
Q Consensus 288 ~~~~~~~~~~~~l~~~~~p~~~~~l~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~pet~ 344 (357)
+.++|+......++..+++.+...+.+..+ +..++++.++..+++.+..++..||.+
T Consensus 118 ~~~~~~~~~~~~~G~~~~~~l~~~l~~~~g~~~~~~~~wr~~f~i~ai~~l~~~~~~~~~~~e~~ 182 (356)
T TIGR00901 118 GYGSTIYIVGYRAGMLLSGSLALVLASPEFANTGLITLWGYIFFWTALLILPGLLVTLFLAKEPQ 182 (356)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccccccHHHHHHHHHHHHHHHHHHHHhccCCC
Confidence 999999888888888888888776665544 445566666666665555555567754
No 187
>PRK15011 sugar efflux transporter B; Provisional
Probab=98.44 E-value=4.6e-05 Score=71.69 Aligned_cols=132 Identities=13% Similarity=0.066 Sum_probs=74.5
Q ss_pred hhhHHHHHHHHHHhhchhHHHH-HHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhhhhccccccCcchhh--
Q 018373 213 ELPGLILSAIIVDKIGRKLSMV-LMFVSACIFLLPLVFHQSAVVTTVLLFGVRMCVTGTITVATIYAPEIYPTSARTT-- 289 (357)
Q Consensus 213 ~~~~~~~~~~l~d~~GRR~~~~-~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ElfPt~~R~~-- 289 (357)
...+.+.+++ .||+|||+.++ .+.+...+.........+...................+....+.+|..|.+-|..
T Consensus 65 ~~~~~~~~~~-~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 143 (393)
T PRK15011 65 ILVSQFLAGR-SDKRGDRKSLIVFCCLLGVLACTLFAWNRNYFVLLFVGVFLSSFGSTANPQMFALAREHADKTGREAVM 143 (393)
T ss_pred HHHHHHHHHH-HhcccchhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhccchHHH
Confidence 3445555666 99999998754 4444333332222222222111111111111111223445556677666665543
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHHhhccccccC
Q 018373 290 GFGVASSLGKVGGMVCPLVAVGLVTSCHLRLAVILFEVVFVLAIASSLLFPFETMG 345 (357)
Q Consensus 290 ~~~~~~~~~~l~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~pet~~ 345 (357)
..++.+....++..++|.+...+.+..++..++++.++..++..+..+++.||.+.
T Consensus 144 ~~~~~~~~~~lg~~~g~~i~~~l~~~~gw~~~f~~~~~~~~~~~~~~~~~~~~~~~ 199 (393)
T PRK15011 144 FSSFLRAQVSLAWVIGPPLAYALAMGFSFTVMYLSAAVAFIVCGVMVWLFLPSMRK 199 (393)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHhhcCccCC
Confidence 34666777788888999888887776666666777777666666666666677643
No 188
>KOG2615 consensus Permease of the major facilitator superfamily [General function prediction only]
Probab=98.37 E-value=7.5e-06 Score=74.10 Aligned_cols=42 Identities=31% Similarity=0.314 Sum_probs=34.9
Q ss_pred hhhhhhccccccCcchhhHHHHHHHHHHHHHhHHHHHHHHHH
Q 018373 272 TVATIYAPEIYPTSARTTGFGVASSLGKVGGMVCPLVAVGLV 313 (357)
Q Consensus 272 ~~~~~~~~ElfPt~~R~~~~~~~~~~~~l~~~~~p~~~~~l~ 313 (357)
+.......-..|+..|++.+|+....+.++=.++|.+.+.+.
T Consensus 371 t~Lt~Lv~~~~~~~qrG~~~Gi~~Sl~alaRaiGPlv~g~i~ 412 (451)
T KOG2615|consen 371 TCLTSLVHKYGPQSQRGTLNGIFRSLGALARAIGPLVSGVIF 412 (451)
T ss_pred HHHHHHHHhcCCcccchHHHHHHHHHHHHHHHhhhhhhheeE
Confidence 345667788899999999999999999999889998875443
No 189
>KOG1330 consensus Sugar transporter/spinster transmembrane protein [Carbohydrate transport and metabolism]
Probab=98.37 E-value=4.1e-07 Score=84.15 Aligned_cols=138 Identities=14% Similarity=0.039 Sum_probs=88.9
Q ss_pred HHHhhhhhHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhhhhccccccCcch
Q 018373 208 IASLAELPGLILSAIIVDKIGRKLSMVLMFVSACIFLLPLVFHQSAVVTTVLLFGVRMCVTGTITVATIYAPEIYPTSAR 287 (357)
Q Consensus 208 i~~~~~~~~~~~~~~l~d~~GRR~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ElfPt~~R 287 (357)
.-.+...+.++++|++.||..||+++.++.++=.++.+...+...-+...++=......-....++...+++++||...|
T Consensus 76 vf~v~~~i~sPl~gyLadryNR~~v~~vG~~iW~~Av~~~~fs~~Fwq~~l~R~~vGiGeAs~~~ia~s~IaD~f~~~~R 155 (493)
T KOG1330|consen 76 VFIVVFMIASPLFGYLADRYNRKRVIAVGIFIWTLAVFASGFSNHFWQVLLCRGFVGIGEASYSPIAPSLIADSFPDDKR 155 (493)
T ss_pred HHHHHHHHHHHHHHHHHhhcCcceEEeeHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhcccchhHhhhcCcchhh
Confidence 34566788899999999999999999877766555544433332222211111111111123446788899999999999
Q ss_pred hhHHHHHHHHHHHHHhHHHHHHHHHHhhc-chhhHHHHHHHHHHHHHHHHhhccccccC
Q 018373 288 TTGFGVASSLGKVGGMVCPLVAVGLVTSC-HLRLAVILFEVVFVLAIASSLLFPFETMG 345 (357)
Q Consensus 288 ~~~~~~~~~~~~l~~~~~p~~~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~pet~~ 345 (357)
+++.++.|.+.-+|+.++-.+..++.+.. ++.+.+.+-+++.++.++++.++.+|...
T Consensus 156 s~~~~ify~~ipvGsglG~vvgs~va~~~~~Wr~af~~~avl~vi~~~L~~~f~~eP~r 214 (493)
T KOG1330|consen 156 SRVLGIFYFAIPVGSGLGYVVGSVVASLTFWWRWAFRGSAVLGVIVGLLVFLFVREPER 214 (493)
T ss_pred hHHHHHhhhhcccccceeEEeeeeeccCccceEEEEEeehHHHHHHHHHHHhhccCccc
Confidence 99999999998777655533323222222 24456666677777777777777666554
No 190
>TIGR00896 CynX cyanate transporter. This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate.
Probab=98.35 E-value=1.9e-05 Score=73.15 Aligned_cols=107 Identities=10% Similarity=-0.029 Sum_probs=67.6
Q ss_pred HHHHhhhhhHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhhhhccccccCcc
Q 018373 207 FIASLAELPGLILSAIIVDKIGRKLSMVLMFVSACIFLLPLVFHQSAVVTTVLLFGVRMCVTGTITVATIYAPEIYPTSA 286 (357)
Q Consensus 207 ~i~~~~~~~~~~~~~~l~d~~GRR~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ElfPt~~ 286 (357)
.+..++..++.++.+++.||+|||+.+..+.++..+..... ...+.....+..+...+......+....+..|.+| +.
T Consensus 42 s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~g~~~~~~~~~~~~~~~~~-~~ 119 (355)
T TIGR00896 42 ALPVLCFAVLAPLAPWLARRFGEERSVAAGLLLIAAGILIR-SAPGTALLFAGTALIGVGIAIINVLLPSLIKRDFP-QR 119 (355)
T ss_pred HHHHHHHHHHHHhHHHHHHHhCchHHHHHHHHHHHHHHHHH-HhccHHHHHHHHHHHHHHHHHHhccchHHHHHhCc-ch
Confidence 34466778889999999999999999888766554433332 21222111111111111111222344556788887 57
Q ss_pred hhhHHHHHHHHHHHHHhHHHHHHHHHHhh
Q 018373 287 RTTGFGVASSLGKVGGMVCPLVAVGLVTS 315 (357)
Q Consensus 287 R~~~~~~~~~~~~l~~~~~p~~~~~l~~~ 315 (357)
|+++.++.+....++..+++.+...+.+.
T Consensus 120 ~~~~~~~~~~~~~~g~~i~~~~~~~l~~~ 148 (355)
T TIGR00896 120 VGLMTGLYSMALMGGAALAAAATVPLAQH 148 (355)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999888888888888777766554
No 191
>TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter. This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot.
Probab=98.34 E-value=4.6e-05 Score=72.96 Aligned_cols=139 Identities=12% Similarity=0.101 Sum_probs=80.8
Q ss_pred HHHHHhhhhhHHHHHHHHHH----hhchhHHHHHH-HHHHHHHHHHHHhhhh-------------hHH---HHHH-HHHH
Q 018373 206 VFIASLAELPGLILSAIIVD----KIGRKLSMVLM-FVSACIFLLPLVFHQS-------------AVV---TTVL-LFGV 263 (357)
Q Consensus 206 ~~i~~~~~~~~~~~~~~l~d----~~GRR~~~~~~-~~~~~i~~~~~~~~~~-------------~~~---~~~~-~~~~ 263 (357)
..+..+..++..++.|++.| |+|||+.++.. .....+.+..+.+..+ ... ..+. ....
T Consensus 45 ~~~~~l~~~i~~Pi~G~lSDr~~sr~GRRrp~il~g~~~~~~~l~ll~~~~~~~~~~~~~~~~~~~~~~i~~~~i~~~ll 124 (477)
T TIGR01301 45 WLCGPLSGLLVQPLVGYLSDRCTSRFGRRRPFIAAGAALVAFAVILIGFAADIGHLFGDNLDKKTKPRAIIVFVVGFWIL 124 (477)
T ss_pred HHHHHHHHHHHHhHeeehhcCCCCCCCChHHHHHHHHHHHHHHHHHHHhCchhhhhccccccccchhHHHHHHHHHHHHH
Confidence 34556777888889999999 59999998764 3333333333332111 011 1111 1111
Q ss_pred HHHhhhhhhhhhhhccccccCcch--hhHHHHHHHHHHHHHhHHHHHHHHH--Hhh--------c-----chhhHHHHHH
Q 018373 264 RMCVTGTITVATIYAPEIYPTSAR--TTGFGVASSLGKVGGMVCPLVAVGL--VTS--------C-----HLRLAVILFE 326 (357)
Q Consensus 264 ~~~~~~~~~~~~~~~~ElfPt~~R--~~~~~~~~~~~~l~~~~~p~~~~~l--~~~--------~-----~~~~~~~~~~ 326 (357)
.++.....+..-++.+|+.|.+.| ..+.++.+....+|+.+++.+.... .+. . +....|++-+
T Consensus 125 d~~~n~~~~p~rALiaDl~p~~~~~~~~a~~~~~~~~~lG~ilg~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~F~i~a 204 (477)
T TIGR01301 125 DVANNMLQGPCRAFLADLTGGDARRTRIANAYFSFFMAIGNVLGYAAGAYSGLYKIFPFTKTEACGVSCANLKSCFLIDI 204 (477)
T ss_pred HHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhcccccccccccccchHHHHHHHHH
Confidence 122223334557789999999877 4677777777777777776654422 110 0 1122344545
Q ss_pred HHHHHHHHHHhhcccccc
Q 018373 327 VVFVLAIASSLLFPFETM 344 (357)
Q Consensus 327 ~~~~~~~~~~~~~~pet~ 344 (357)
++.+++.+++.+..+|..
T Consensus 205 ~~l~i~~l~t~~~v~E~~ 222 (477)
T TIGR01301 205 ILLAILTYIALSAVKENP 222 (477)
T ss_pred HHHHHHHHHHeeeeeccC
Confidence 666677778888888864
No 192
>PRK09528 lacY galactoside permease; Reviewed
Probab=98.34 E-value=3e-05 Score=73.63 Aligned_cols=137 Identities=14% Similarity=0.114 Sum_probs=73.4
Q ss_pred HHHHHhhhhhHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHh-hhhhHH--HHHHH-HHHHHHhhhhhhhhhhhcccc
Q 018373 206 VFIASLAELPGLILSAIIVDKIGRKLSMVLMFVSACIFLLPLVF-HQSAVV--TTVLL-FGVRMCVTGTITVATIYAPEI 281 (357)
Q Consensus 206 ~~i~~~~~~~~~~~~~~l~d~~GRR~~~~~~~~~~~i~~~~~~~-~~~~~~--~~~~~-~~~~~~~~~~~~~~~~~~~El 281 (357)
..+..+...++.++.|++.||+|||+.++.+..+..+....... ...... ..... ....+.....+........+.
T Consensus 52 ~s~~~l~~~i~~~~~G~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 131 (420)
T PRK09528 52 FSANSLFALLFQPLYGLISDKLGLKKHLLWIISGLLVLFGPFFIYVFAPLLQYNILLGAIVGGIYLGFGFLAGAGAIEAY 131 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccchhhhhhH
Confidence 34556777888999999999999999987655444333221111 111100 00111 111111111111111112222
Q ss_pred cc--CcchhhHHHHHHHHHHHHHhHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHHhhccccc
Q 018373 282 YP--TSARTTGFGVASSLGKVGGMVCPLVAVGLVTSCHLRLAVILFEVVFVLAIASSLLFPFET 343 (357)
Q Consensus 282 fP--t~~R~~~~~~~~~~~~l~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~pet 343 (357)
.+ .+.|+...|.....+.++..++|.+...+.+. ++..++++.++.++++.+..++..||.
T Consensus 132 ~~~~~~~~g~~~g~~~~~~~~g~~i~~~~~g~l~~~-~~~~~f~~~~~~~~~~~~~~~~~~~~~ 194 (420)
T PRK09528 132 IERVSRRSGFEYGRARMWGSLGWALCAFIAGILFNI-NPQINFWLGSGSALILLVLLFFAKPDA 194 (420)
T ss_pred HHHHHhhccccchhhHHhhhHHHHHHHHHHHHHHhc-CchHhHHHHHHHHHHHHHHHhcccccc
Confidence 22 23455566777777888888888888776553 445566666666666666665554443
No 193
>PRK11902 ampG muropeptide transporter; Reviewed
Probab=98.30 E-value=7.5e-05 Score=70.44 Aligned_cols=131 Identities=17% Similarity=0.121 Sum_probs=82.2
Q ss_pred hhHHHHHHHHHHhh-----chhH-HHHHHHHHHHHHHHHHHhh-h-hhHH-HHHHHHHHHHHhhhhhhhhhhhccccccC
Q 018373 214 LPGLILSAIIVDKI-----GRKL-SMVLMFVSACIFLLPLVFH-Q-SAVV-TTVLLFGVRMCVTGTITVATIYAPEIYPT 284 (357)
Q Consensus 214 ~~~~~~~~~l~d~~-----GRR~-~~~~~~~~~~i~~~~~~~~-~-~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ElfPt 284 (357)
.+..++.+.++||+ |||+ ++..+..++.+....+.+. . ...+ .....+...++.....+....+.+|.+|.
T Consensus 46 ~~~~~l~g~~~Dr~~~~~~g~rr~~l~~~~~~~~l~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~al~~~~~~~ 125 (402)
T PRK11902 46 YIFKFLWAPLMDRYTPPLLGRRRGWLLLTQVGLAASIAAMAFCPPHAALWPLAGLAVLVAFLSASQDIVFDAYSTDVLHP 125 (402)
T ss_pred HHHHHHHHHHHHcccccCCCcchhHHHHHHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCh
Confidence 46677889999999 8876 5666666665554444432 2 1111 11111222222222334667889999999
Q ss_pred cchhhHHHHHHHHHHHHHhHHHHHHHHHHhh-cchhhHHHHHHHHHHHHHHHHhhccccccC
Q 018373 285 SARTTGFGVASSLGKVGGMVCPLVAVGLVTS-CHLRLAVILFEVVFVLAIASSLLFPFETMG 345 (357)
Q Consensus 285 ~~R~~~~~~~~~~~~l~~~~~p~~~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~pet~~ 345 (357)
+.|+++.++......++..+++.+...+.+. .++...+++.++..+++.+. .+..||++.
T Consensus 126 ~~r~~~~~~~~~g~~~g~i~g~~l~~~l~~~~~gw~~~f~i~a~~~l~~~l~-~~~~~e~~~ 186 (402)
T PRK11902 126 EERGAGAAVKVLGYRLAMLVSGGLALWLADRVLGWGNTYLLMAGLMLAGALT-TLWAPEPEV 186 (402)
T ss_pred hhhhHHHHHHHHHHHHHHHHHhHHHHHHHhcccCHHHHHHHHHHHHHHHHHH-HHhcCCCcc
Confidence 9999999999987788888888777766654 35555666666665555443 344566643
No 194
>TIGR00805 oat sodium-independent organic anion transporter. Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange.
Probab=98.22 E-value=1.6e-05 Score=79.42 Aligned_cols=105 Identities=11% Similarity=0.110 Sum_probs=69.6
Q ss_pred HhhhhhHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHhhh----------------------------h---------
Q 018373 210 SLAELPGLILSAIIVDKIGRKLSMVLMFVSACIFLLPLVFHQ----------------------------S--------- 252 (357)
Q Consensus 210 ~~~~~~~~~~~~~l~d~~GRR~~~~~~~~~~~i~~~~~~~~~----------------------------~--------- 252 (357)
.++..++.++.+++.||.|||+++.++.++.++..+.+...+ .
T Consensus 78 ~i~~~~~~i~v~~~~~r~~r~~~i~~g~ll~~lg~ll~alphf~~~~y~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~ 157 (633)
T TIGR00805 78 EIGNLLLIIFVSYFGTKLHRPIVIGIGCAIMGLGSFLLSLPHFLSGRYSYSTTVSSTGNLSSANSFLCMENLTQALRPTQ 157 (633)
T ss_pred hHHHHHHHHHHHHhhcccCcceEEEecHHHHHHHHHHHhChHHhcCCccccccccccccccccccccccCCCCCCccccc
Confidence 455667778889999999999998776665554433332211 0
Q ss_pred --------h--HHHHHHHHHHHH----HhhhhhhhhhhhccccccCcchhhHHHHHHHHHHHHHhHHHHHHHHHHh
Q 018373 253 --------A--VVTTVLLFGVRM----CVTGTITVATIYAPEIYPTSARTTGFGVASSLGKVGGMVCPLVAVGLVT 314 (357)
Q Consensus 253 --------~--~~~~~~~~~~~~----~~~~~~~~~~~~~~ElfPt~~R~~~~~~~~~~~~l~~~~~p~~~~~l~~ 314 (357)
. .....+++...+ .....+++...+..|.+|.+.|+...|+.+....++..+++.+...+.+
T Consensus 158 ~~~~~~~~~~~~~~~~~~~~~r~l~GiG~~~~~~~~~~~i~d~~~~~~~~~~~~i~~~~~~iG~~lG~llgg~l~~ 233 (633)
T TIGR00805 158 CPSECQKQHKESLMWLLFLVSQLLRGIGATPIFPLGISYIDDFAKSKNSPLYIGILESIAVFGPAFGYLLGSFCLQ 233 (633)
T ss_pred cccccccccCCCceehhhHHHHHHHhccCCcchhcCchhhhccCCccccHHHHHHHHHHHHhhhHHHHHHHHHHHh
Confidence 0 001111112222 1223345678899999999999999999999998888888877776654
No 195
>TIGR00806 rfc RFC reduced folate carrier. Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined.
Probab=98.17 E-value=8.1e-05 Score=70.36 Aligned_cols=102 Identities=17% Similarity=0.148 Sum_probs=72.9
Q ss_pred hhhhhHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhhhhccccccCcchhhH
Q 018373 211 LAELPGLILSAIIVDKIGRKLSMVLMFVSACIFLLPLVFHQSAVVTTVLLFGVRMCVTGTITVATIYAPEIYPTSARTTG 290 (357)
Q Consensus 211 ~~~~~~~~~~~~l~d~~GRR~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ElfPt~~R~~~ 290 (357)
.+-.+..+.++++.||+|-|+.+..+.+.-+++...+.+.++.....+.-++.++.-.+.+ ..+.++...||.+-|+++
T Consensus 73 ysYal~qIp~GlLaDrlG~K~vL~l~~l~Wsl~t~L~~fa~Sl~~L~i~R~llGvaEA~~~-A~~syI~~WfP~kER~ra 151 (511)
T TIGR00806 73 YSHLAVLVPVFLLTDYLRYKPVLVLQALSFVCVWLLLLLGTSVWHMQLMEVFYSVTMAARI-AYSSYIFSLVPPSRYQRA 151 (511)
T ss_pred HHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHCCHHHHHHH
Confidence 4456677888999999999999988877766666555543322111122122222222334 678899999999999999
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHH
Q 018373 291 FGVASSLGKVGGMVCPLVAVGLV 313 (357)
Q Consensus 291 ~~~~~~~~~l~~~~~p~~~~~l~ 313 (357)
+|++++...+|.++++.+...+.
T Consensus 152 tsi~~sg~~vG~~Ia~~L~qll~ 174 (511)
T TIGR00806 152 AAYSRAAVLLGVFLSSVLGQLLV 174 (511)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999988887744
No 196
>TIGR00882 2A0105 oligosaccharide:H+ symporter.
Probab=98.17 E-value=0.00011 Score=69.03 Aligned_cols=135 Identities=16% Similarity=0.193 Sum_probs=72.4
Q ss_pred HHHHHhhhhhHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHH---hhh---hhHHHHHH--HHHHHHHhhhhhhhhhhh
Q 018373 206 VFIASLAELPGLILSAIIVDKIGRKLSMVLMFVSACIFLLPLV---FHQ---SAVVTTVL--LFGVRMCVTGTITVATIY 277 (357)
Q Consensus 206 ~~i~~~~~~~~~~~~~~l~d~~GRR~~~~~~~~~~~i~~~~~~---~~~---~~~~~~~~--~~~~~~~~~~~~~~~~~~ 277 (357)
..+..+...++.++.|++.||+|||+.++......++...... ... ........ .+...+......+....+
T Consensus 44 ~~~~~l~~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 123 (396)
T TIGR00882 44 FSCISLFSILFQPLFGLISDKLGLKKHLLWIISGLLVLFAPFFIYVFGPLLQSNILVGAIVGGLYLGFVFSAGAGAIEAY 123 (396)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhccchhhHHHH
Confidence 3455677788889999999999999999866554433222211 111 01111101 111111111112233333
Q ss_pred ccccccCcchhhHHHHHHHHHHHHHhHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHHhhccccc
Q 018373 278 APEIYPTSARTTGFGVASSLGKVGGMVCPLVAVGLVTSCHLRLAVILFEVVFVLAIASSLLFPFET 343 (357)
Q Consensus 278 ~~ElfPt~~R~~~~~~~~~~~~l~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~pet 343 (357)
.+|.- +.++...|.....+.++..++|.+...+.+ .++..++++.+.+.++..++.++..||.
T Consensus 124 ~~~~~--~~~~~~~g~~~~~~~~g~~~g~~~~g~l~~-~~~~~~f~~~~~~~~~~~~~~~~~~~~~ 186 (396)
T TIGR00882 124 IEKVS--RNSNFEYGKARMFGCVGWALCASIAGILFS-IDPQIVFWLGSGFALILMLLLMFAKPKA 186 (396)
T ss_pred HHHhh--hhcccccchhhhhcccHHHHHHHHHhhhhc-cCchHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 34432 223345566667777888888877665543 3555666666666666655555555554
No 197
>PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters. Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane
Probab=98.03 E-value=5.1e-08 Score=93.36 Aligned_cols=102 Identities=18% Similarity=0.247 Sum_probs=69.1
Q ss_pred HHHHhhhhhHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHhhh---hhHHHHHHHHHHHHHhhhhhhhhhhhcccccc
Q 018373 207 FIASLAELPGLILSAIIVDKIGRKLSMVLMFVSACIFLLPLVFHQ---SAVVTTVLLFGVRMCVTGTITVATIYAPEIYP 283 (357)
Q Consensus 207 ~i~~~~~~~~~~~~~~l~d~~GRR~~~~~~~~~~~i~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~ElfP 283 (357)
....++..+|+++++++.||+|||+.++.+.++..+..+...+.. +.....+.-+..++...+......++..|.-|
T Consensus 53 ~~~~~g~~~G~~~~g~~~d~~GRk~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~R~~~G~~~g~~~~~~~~~~~E~~~ 132 (451)
T PF00083_consen 53 SSFFIGAIVGALIFGFLADRYGRKPALIISALLMIIGSILIAFAPSYNNFWMLLIGRFLIGFGIGGAYVVSPIYISEIAP 132 (451)
T ss_pred HHHHhhhccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 455678899999999999999999999888776655554444432 22221111122223333445678899999999
Q ss_pred CcchhhHHHHHHHHHHHHHhHHHHH
Q 018373 284 TSARTTGFGVASSLGKVGGMVCPLV 308 (357)
Q Consensus 284 t~~R~~~~~~~~~~~~l~~~~~p~~ 308 (357)
++.|+...++......+|..++..+
T Consensus 133 ~~~R~~~~~~~~~~~~~G~~~~~~~ 157 (451)
T PF00083_consen 133 PKHRGFLSSLFQLFWALGILLASLI 157 (451)
T ss_pred ccccccccccccccccccccccccc
Confidence 9999988888877666665555444
No 198
>KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]
Probab=98.01 E-value=0.00018 Score=68.83 Aligned_cols=129 Identities=16% Similarity=0.133 Sum_probs=90.4
Q ss_pred HhhhhhHHHHHHHHHHhhchhHHHHHHHHHHHHHHH--HHHhhhhhHHHHHHHHHHHHHhhhhhhhhhhhccccccCcch
Q 018373 210 SLAELPGLILSAIIVDKIGRKLSMVLMFVSACIFLL--PLVFHQSAVVTTVLLFGVRMCVTGTITVATIYAPEIYPTSAR 287 (357)
Q Consensus 210 ~~~~~~~~~~~~~l~d~~GRR~~~~~~~~~~~i~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ElfPt~~R 287 (357)
..+.+++.+.+++++||+|-|+.+..+.+++++.-+ +...........+.=+..++.....++....+.+.-.|.+-|
T Consensus 83 ~~G~i~~~iP~g~l~~k~G~r~v~~~~~~~sa~~t~l~P~aa~~~~~~~~~~R~lqGl~~g~~~pa~~~i~~~W~P~~Er 162 (466)
T KOG2532|consen 83 FWGYILGQIPGGYLADKFGARRVFFISGLISALLTLLTPLAASIGFYLLLVLRFLQGLGQGVLFPAIGSILAKWAPPNER 162 (466)
T ss_pred HHHHHHHHcCcHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHhHHHHhHHHhhhhceeeeECCHHHH
Confidence 456678888889999999999999888777665433 222222222212222223333344567788899999999999
Q ss_pred hhHHHHHHHHHHHHHhHHHHHHHHHHhh-cchhhHHHHHHHHHHHHHHHHhh
Q 018373 288 TTGFGVASSLGKVGGMVCPLVAVGLVTS-CHLRLAVILFEVVFVLAIASSLL 338 (357)
Q Consensus 288 ~~~~~~~~~~~~l~~~~~p~~~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~ 338 (357)
++..++.++...++.++.-.+.+.+-+. .|+...|++++++.++-.++.++
T Consensus 163 s~~~ail~~g~q~g~v~~mp~sg~lc~s~~GW~sifY~~g~~g~i~~~~w~~ 214 (466)
T KOG2532|consen 163 STFIAILTAGSQLGTIITMPVSGLLCESSLGWPSIFYVFGIVGLIWFILWFL 214 (466)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHhccCCCCchHHHHHHHHHHHHHHHHHH
Confidence 9999999999999888876677777776 67777888888777655444333
No 199
>TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter. GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners.
Probab=97.96 E-value=0.00018 Score=68.39 Aligned_cols=138 Identities=13% Similarity=0.121 Sum_probs=77.9
Q ss_pred HHHHhhhhhHHHHHHHHHHh----hchhH-HHHHHHHHHHHHHHHHHhhhh----h-HHHH-HHHHHHHHHhhhhhhhhh
Q 018373 207 FIASLAELPGLILSAIIVDK----IGRKL-SMVLMFVSACIFLLPLVFHQS----A-VVTT-VLLFGVRMCVTGTITVAT 275 (357)
Q Consensus 207 ~i~~~~~~~~~~~~~~l~d~----~GRR~-~~~~~~~~~~i~~~~~~~~~~----~-~~~~-~~~~~~~~~~~~~~~~~~ 275 (357)
.+..+...+..++.|+++|| +|||+ .++.+.....+....+....+ . .... ..................
T Consensus 42 ~~~~i~~~i~~p~~G~lsDr~~~r~Grrr~~i~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 121 (437)
T TIGR00792 42 LVARILDAITDPIMGNIVDRTRTRWGKFRPWLLIGAIPFSIVLVLLFTTPDFSATGKLVYAYITYILLGLFYSFVNIPYW 121 (437)
T ss_pred HHHHHHHHhccchheEeeecCCCCCCCcchhHHHhHHHHHHHHHHHHhCCCCCcchHHHHHHHHHHHHHHHHHhhcccHh
Confidence 34456677888899999998 67755 455555555544444333211 1 1111 111111111111112345
Q ss_pred hhcccccc-CcchhhHHHHHHHHHHHHHhHHHHHHHHHHhh-------cchhhHHHHHHHHHHHHHHHHhhcccccc
Q 018373 276 IYAPEIYP-TSARTTGFGVASSLGKVGGMVCPLVAVGLVTS-------CHLRLAVILFEVVFVLAIASSLLFPFETM 344 (357)
Q Consensus 276 ~~~~ElfP-t~~R~~~~~~~~~~~~l~~~~~p~~~~~l~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~pet~ 344 (357)
.+.+|+.+ .+.|++..++....+.+++.+++.+..++... .++...+.+++++..+..++.++..||++
T Consensus 122 al~~~~~~~~~~R~~~~~~~~~~~~~g~~l~~~~~~~l~~~~~~~~~~~g~~~~~~i~~~l~~~~~~~~~~~~~e~~ 198 (437)
T TIGR00792 122 SLVPAITLDPRERESLSTFRRFGATLGGLLVAVIVLPLVSYFGGGDDKFGWFMFALVLALIGVVSLIICFFGTKERY 198 (437)
T ss_pred hCcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccccHHHHHHHHHHHHHHHHHHHHcCCEecC
Confidence 67889874 68899999988888777776666554444432 12233455666666666666666677764
No 200
>KOG2816 consensus Predicted transporter ADD1 (major facilitator superfamily) [General function prediction only]
Probab=97.96 E-value=0.00011 Score=70.00 Aligned_cols=138 Identities=21% Similarity=0.277 Sum_probs=99.2
Q ss_pred HhhhhhHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhhhhccccccCcchhh
Q 018373 210 SLAELPGLILSAIIVDKIGRKLSMVLMFVSACIFLLPLVFHQSAVVTTVLLFGVRMCVTGTITVATIYAPEIYPTSARTT 289 (357)
Q Consensus 210 ~~~~~~~~~~~~~l~d~~GRR~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ElfPt~~R~~ 289 (357)
++..++.+.+-|.+.|+.|||..+......+.+-...+.+.. ++..+ ...........++....+.++.-..+.|+.
T Consensus 72 ~~~~~i~s~~iG~lSD~~grk~~L~~~~~~~~l~~~~~~~~~--~~~~~-~~~l~g~~~~~~s~~~a~vadis~~~~R~~ 148 (463)
T KOG2816|consen 72 GLLTLISSPLIGALSDRYGRKVVLLLPLFGTILPALCLLFQG--YWFFL-LLGLSGGFSAIFSVGFAYVADISSEEERSS 148 (463)
T ss_pred HHHHHHHHhhhHHhhhhhhhhhhHHHHHHHHHHhHHHHHHHH--HHHhh-hcccccchhhhhhhhhhheeeccchhHHHH
Confidence 455667777889999999999999888776655444333322 11111 111111122344567889999999999999
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHHhhccccccCcchhh
Q 018373 290 GFGVASSLGKVGGMVCPLVAVGLVTSCHLRLAVILFEVVFVLAIASSLLFPFETMGRELKD 350 (357)
Q Consensus 290 ~~~~~~~~~~l~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~pet~~~~l~e 350 (357)
..|+.+..-+.+..++|.+...+....+....+.+-++..+++.++..+++||+...+.++
T Consensus 149 ~~gll~~~~~~~~~~~p~~~~~~~~~~~~a~~f~ia~~~~~~~~~y~~~~l~Esl~~~~~~ 209 (463)
T KOG2816|consen 149 SIGLLSGTFGAGLVIGPALGGYLVKFLGIALVFLIAAASGILSLLYMLLFLPESLQEKERS 209 (463)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHhhccccccCccccc
Confidence 9999999999999999988887777666555566667777888888999999988766543
No 201
>COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism]
Probab=97.92 E-value=0.00022 Score=67.17 Aligned_cols=126 Identities=19% Similarity=0.216 Sum_probs=79.2
Q ss_pred hhhHHHHHHHHHHh-hchhHHHHHHHHHHHHHHHHHHhhh--hhHHHHHHHHHHHHHhhhhh-hhhhhhccccccCc--c
Q 018373 213 ELPGLILSAIIVDK-IGRKLSMVLMFVSACIFLLPLVFHQ--SAVVTTVLLFGVRMCVTGTI-TVATIYAPEIYPTS--A 286 (357)
Q Consensus 213 ~~~~~~~~~~l~d~-~GRR~~~~~~~~~~~i~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ElfPt~--~ 286 (357)
.-...+++||++|| +|+|+..+.+.++..+--+.+.... ......+-+... .+..|.+ +=.-.+.+|+||.+ .
T Consensus 74 VY~t~i~GG~laDr~LG~~~tI~lGail~~iGh~~L~~~~~~~~~gl~i~L~~I-~iG~Gl~K~NiS~llg~ly~~~Dpr 152 (498)
T COG3104 74 VYLTPIIGGWLADRVLGTRRTIVLGAILMAIGHLVLAISSVSGPGGLYIGLALI-IVGTGLFKPNISSLLGELYPKDDPR 152 (498)
T ss_pred HHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhccccccccHHHHHHHHH-HhccccccccHHHHHHHhcCCCCcc
Confidence 35567789999999 4999999888776665554444432 111111111111 1112221 23456789999873 3
Q ss_pred hhhHHHHHHHHHHHHHhHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHHhhc
Q 018373 287 RTTGFGVASSLGKVGGMVCPLVAVGLVTSCHLRLAVILFEVVFVLAIASSLLF 339 (357)
Q Consensus 287 R~~~~~~~~~~~~l~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 339 (357)
|-.+.++-+...++|++.+|++.+++.+..+....|...++-..++.+..++.
T Consensus 153 rD~gFt~fY~~iNiGsl~~p~i~~~~~~~~g~~~gF~~aavGm~~gl~~f~~~ 205 (498)
T COG3104 153 RDGGFTLFYMGINIGSLIAPIITGLLAINYGWHVGFGLAAVGMIIGLVIFLLG 205 (498)
T ss_pred cCCCccEEEEEeehHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHc
Confidence 77888888988999999999999988777665555555444444554444443
No 202
>KOG2504 consensus Monocarboxylate transporter [Carbohydrate transport and metabolism]
Probab=97.88 E-value=0.00023 Score=68.93 Aligned_cols=131 Identities=21% Similarity=0.157 Sum_probs=91.2
Q ss_pred HhhhhhHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHH--HHhhhhhhhhhhhccccccCcch
Q 018373 210 SLAELPGLILSAIIVDKIGRKLSMVLMFVSACIFLLPLVFHQSAVVTTVLLFGVR--MCVTGTITVATIYAPEIYPTSAR 287 (357)
Q Consensus 210 ~~~~~~~~~~~~~l~d~~GRR~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~ElfPt~~R 287 (357)
..+.....++.+.+.||+|.|...+.+.++++..++...+-++.+. ..+.+... +.....+...-++++ .|..+.|
T Consensus 91 ~~~~~~~gpl~s~l~~rfg~R~v~i~G~~v~~~g~~lssF~~~i~~-l~lt~gvi~G~G~~~~~~paiviv~-~YF~kkR 168 (509)
T KOG2504|consen 91 LGVYLLAGPLVSALCNRFGCRTVMIAGGLVAALGLLLSSFATSLWQ-LYLTFGVIGGLGLGLIYLPAVVILG-TYFEKKR 168 (509)
T ss_pred HHHHHHhccHHHHHHhhcCchHHHHHHHHHHHHHHHHHHHHhhHHH-HHHHHHHHhhccchhhhcchhhhhh-hHhHHHH
Confidence 3445666778899999999999999888887776665444333221 11111111 111112222334455 5666799
Q ss_pred hhHHHHHHHHHHHHHhHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHHhhcccc
Q 018373 288 TTGFGVASSLGKVGGMVCPLVAVGLVTSCHLRLAVILFEVVFVLAIASSLLFPFE 342 (357)
Q Consensus 288 ~~~~~~~~~~~~l~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~pe 342 (357)
+.++|++.+-.-+|.++-|.+..++.+..++.++.++++.+.+-+.++...+.|.
T Consensus 169 ~lA~Gia~~GsG~G~~~~~~l~~~l~~~~G~r~~~l~~~~~~l~~~~~~~~~rp~ 223 (509)
T KOG2504|consen 169 ALATGIAVSGTGVGTVVFPPLLKYLLSKYGWRGALLIFGGISLNVLVAGALLRPL 223 (509)
T ss_pred HHHHhhhhccCCcceeeHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 9999999999999999999888888888888888899888888777777777773
No 203
>KOG0252 consensus Inorganic phosphate transporter [Inorganic ion transport and metabolism]
Probab=97.85 E-value=0.00036 Score=65.02 Aligned_cols=93 Identities=14% Similarity=0.063 Sum_probs=63.2
Q ss_pred HHHHHhhhhhHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHh--h-hhhHHHHHHHHHH----HHHhhhhhhhhhhhc
Q 018373 206 VFIASLAELPGLILSAIIVDKIGRKLSMVLMFVSACIFLLPLVF--H-QSAVVTTVLLFGV----RMCVTGTITVATIYA 278 (357)
Q Consensus 206 ~~i~~~~~~~~~~~~~~l~d~~GRR~~~~~~~~~~~i~~~~~~~--~-~~~~~~~~~~~~~----~~~~~~~~~~~~~~~ 278 (357)
..++.++.+.|.++.|++.||+|||+.+...+++..++-+.... . +.+.-.+..+++. .+.+.+-++..-+++
T Consensus 90 n~~A~vGti~GQl~FG~lgD~~GRK~vYG~~liImIi~t~~~~~s~~~~~~~~~m~~L~~~R~~LGiGIGGDYPlSAtI~ 169 (538)
T KOG0252|consen 90 NAAALVGTIFGQLFFGWLGDKFGRKKVYGKELIIMIICSALSGLSVGTTSPLGVMMTLCFFRFLLGIGIGGDYPLSATIM 169 (538)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhcchhhhhHHHHHHHHHHHHhccCCCCCCCcchhhHHHHHHHHhhccccCCCcchHHHh
Confidence 34678888999999999999999999987766665555443332 1 1221111122222 233345578999999
Q ss_pred cccccCcchhhHHHHHHHHH
Q 018373 279 PEIYPTSARTTGFGVASSLG 298 (357)
Q Consensus 279 ~ElfPt~~R~~~~~~~~~~~ 298 (357)
||---.+-|++-.+...++.
T Consensus 170 SE~an~~~RGa~iaavFa~Q 189 (538)
T KOG0252|consen 170 SESANKKTRGAFIAAVFAMQ 189 (538)
T ss_pred hhhhhhccccceeEEEEEec
Confidence 99999999998887775553
No 204
>PF06813 Nodulin-like: Nodulin-like; InterPro: IPR010658 This entry represents a conserved region within plant nodulin-like proteins and a number of uncharacterised proteins.
Probab=97.80 E-value=0.00074 Score=58.95 Aligned_cols=106 Identities=15% Similarity=0.143 Sum_probs=64.3
Q ss_pred HHHhhhhhHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHh--hh---hhHHHHHHHHHH--HHHhhhhhhhhhhhccc
Q 018373 208 IASLAELPGLILSAIIVDKIGRKLSMVLMFVSACIFLLPLVF--HQ---SAVVTTVLLFGV--RMCVTGTITVATIYAPE 280 (357)
Q Consensus 208 i~~~~~~~~~~~~~~l~d~~GRR~~~~~~~~~~~i~~~~~~~--~~---~~~~~~~~~~~~--~~~~~~~~~~~~~~~~E 280 (357)
..+++...| +..|.+.|+.|.|..+.++.+...+--..++. .. ....+....+.. ........+....-..+
T Consensus 45 ~~~~G~~~G-~~~G~l~d~~gp~~~l~iG~~~~~~GY~~~~l~~~~~i~~~~~~~~~~~~~l~~~s~~~~~ta~lvt~~~ 123 (250)
T PF06813_consen 45 AGDIGSYFG-ILAGLLYDRFGPWVVLLIGAVLGFVGYGLLWLAVSGRIPSLPVWLMCLFLFLGGNSSCWFNTASLVTCVR 123 (250)
T ss_pred HHHHHhhcc-HHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHhCccCccchHHHHHHHHHHcccHHHhhhHHHHHHHH
Confidence 445565554 78899999999999998877766554433332 11 111211111111 11111122333444568
Q ss_pred cccCcchhhHHHHHHHHHHHHHhHHHHHHHHHHhh
Q 018373 281 IYPTSARTTGFGVASSLGKVGGMVCPLVAVGLVTS 315 (357)
Q Consensus 281 lfPt~~R~~~~~~~~~~~~l~~~~~p~~~~~l~~~ 315 (357)
-||. .|+++.|+.-+..-+++.+-..+...+..+
T Consensus 124 NFP~-~RG~vvgilk~~~GLSaai~t~i~~~~f~~ 157 (250)
T PF06813_consen 124 NFPR-SRGTVVGILKGFFGLSAAIFTQIYSAFFGD 157 (250)
T ss_pred hCcc-ccCceehhhhHHHHhHHHHHHHHHHHHcCC
Confidence 9995 799999999999888887777776655543
No 205
>TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family. RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes.
Probab=97.79 E-value=0.0016 Score=61.03 Aligned_cols=71 Identities=15% Similarity=0.044 Sum_probs=51.5
Q ss_pred hhhhhccccccCcchhhHHHHHHHHHHHHHhHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHHhhccccc
Q 018373 273 VATIYAPEIYPTSARTTGFGVASSLGKVGGMVCPLVAVGLVTSCHLRLAVILFEVVFVLAIASSLLFPFET 343 (357)
Q Consensus 273 ~~~~~~~ElfPt~~R~~~~~~~~~~~~l~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~pet 343 (357)
..-.+..|..+.+.|+...+.......+|..+++....++.+..++..++++.+++.++..+..++..||.
T Consensus 117 ~~d~~~~~~~~~~~~~~~~~~~~~g~~lG~~~g~~~~~~l~~~~gw~~~f~~~a~l~~~~~~~~~~~~~~~ 187 (390)
T TIGR02718 117 ATDGMAAEHFNGRTLAKGNAVQIAGVMIGFFGGGAGTLVLFGKFGQRPAFLLVACVPLASLVCVLWLKDRA 187 (390)
T ss_pred HHHHHHHHhCCHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHcCCCC
Confidence 44557888889988888887777666788888887776677766766777777777766666665655553
No 206
>TIGR00902 2A0127 phenyl proprionate permease family protein. This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules.
Probab=97.76 E-value=0.0022 Score=59.97 Aligned_cols=119 Identities=11% Similarity=0.112 Sum_probs=66.9
Q ss_pred HHHhhhhhHHHHHHHHHHhhchhHHHHHHHHHHH-HHHHHHH-hhhhhHHHHHHHHHHHHHhhhhhhhhhhhccccccCc
Q 018373 208 IASLAELPGLILSAIIVDKIGRKLSMVLMFVSAC-IFLLPLV-FHQSAVVTTVLLFGVRMCVTGTITVATIYAPEIYPTS 285 (357)
Q Consensus 208 i~~~~~~~~~~~~~~l~d~~GRR~~~~~~~~~~~-i~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ElfPt~ 285 (357)
+..+...++.++.+.+.||.|||........... ++...+. ..++.+...+.......+.....+....+..| +.+
T Consensus 47 ~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~p~~~al~~~--~~~ 124 (382)
T TIGR00902 47 AALIARFAGGLFFAPLIKDANHIIIALRLLALASAIFAAAFSAGAHNAWLLFIAIGLFALFFSAGMPIGDALANT--WQK 124 (382)
T ss_pred HHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHccchhHHHHHHHH--HHH
Confidence 3455667778888999999998654432222111 1111111 12222221111111112222223444455544 256
Q ss_pred chhhHHHHHHHHHHHHHhHHHHHHHHHHhhcchhhHHHHHHHH
Q 018373 286 ARTTGFGVASSLGKVGGMVCPLVAVGLVTSCHLRLAVILFEVV 328 (357)
Q Consensus 286 ~R~~~~~~~~~~~~l~~~~~p~~~~~l~~~~~~~~~~~~~~~~ 328 (357)
.|++..|.....+.++..++|.+...+.+..++...+.+....
T Consensus 125 ~~~~~~g~~~~~~slG~~~g~~l~g~l~~~~g~~~~f~~~~~~ 167 (382)
T TIGR00902 125 QFGLDYGKVRLIGSAAFIIGSALFGGLIGMFDEQNILAILTAG 167 (382)
T ss_pred HcCCCccHHHHHHHHHHHHHHHHHHHHHHHcChhHHHHHHHHH
Confidence 7889999999999999999999888888776665555554433
No 207
>PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins. Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus).
Probab=97.75 E-value=0.0019 Score=61.66 Aligned_cols=69 Identities=17% Similarity=0.326 Sum_probs=46.3
Q ss_pred hhhhhccccccCcchhhHHHHHHHHHHHHHhHHHHHHHHHHhhcch--------hhHHHHHHHHHHHHHHHHhhccc
Q 018373 273 VATIYAPEIYPTSARTTGFGVASSLGKVGGMVCPLVAVGLVTSCHL--------RLAVILFEVVFVLAIASSLLFPF 341 (357)
Q Consensus 273 ~~~~~~~ElfPt~~R~~~~~~~~~~~~l~~~~~p~~~~~l~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~p 341 (357)
......+|+=|...-++..++-.++.+++..++..+...+.+..+. ....++..++.++...++.+++|
T Consensus 338 P~lvl~a~lcP~G~Egt~yall~s~~Nlg~~~s~~lg~~l~~~~~vt~~~f~~l~~lili~~~~~ll~l~ll~lLp~ 414 (433)
T PF03092_consen 338 PSLVLAARLCPKGSEGTVYALLASFSNLGSSVSSTLGAFLMELFGVTRDDFSNLWLLILICSVIQLLPLPLLFLLPP 414 (433)
T ss_pred HHHHHHHHHCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccccchHHHHHHHHHHHHHHHHHHHHcCC
Confidence 3456799999999999999999999999888887776665554331 12223334444455445545443
No 208
>COG0738 FucP Fucose permease [Carbohydrate transport and metabolism]
Probab=97.72 E-value=0.0036 Score=57.59 Aligned_cols=106 Identities=16% Similarity=0.133 Sum_probs=69.1
Q ss_pred HHhhhhhHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHH---hhhhhHHHHHHHHHHHHHhhhhhhhhhhhccccccCc
Q 018373 209 ASLAELPGLILSAIIVDKIGRKLSMVLMFVSACIFLLPLV---FHQSAVVTTVLLFGVRMCVTGTITVATIYAPEIYPTS 285 (357)
Q Consensus 209 ~~~~~~~~~~~~~~l~d~~GRR~~~~~~~~~~~i~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ElfPt~ 285 (357)
...+-.++.+..+++++|+|+|+-++.+..++.+....++ ...+-......++.........-+....+++-+.|.+
T Consensus 57 ff~gYf~~~lpa~~~~kk~gyk~gi~lgL~l~avg~~lF~pAa~~~~y~~FL~~lFila~Gi~~LetaaNp~v~~lg~~~ 136 (422)
T COG0738 57 FFGGYFIMSLPAGLLIKKLGYKAGIVLGLLLYAVGAALFWPAASSKSYGFFLVALFILASGIGLLETAANPYVTLLGKPE 136 (422)
T ss_pred HHHHHHHHhccHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHhhhHHHHhccchHHHHhCCch
Confidence 3445567778889999999999999988877666554432 1111111111111111111111134556788899998
Q ss_pred chhhHHHHHHHHHHHHHhHHHHHHHHHHh
Q 018373 286 ARTTGFGVASSLGKVGGMVCPLVAVGLVT 314 (357)
Q Consensus 286 ~R~~~~~~~~~~~~l~~~~~p~~~~~l~~ 314 (357)
..+.=.++...++.+|++++|.+..++..
T Consensus 137 ~a~~rlnl~q~fn~lGa~~gp~~g~~lil 165 (422)
T COG0738 137 SAAFRLNLAQAFNGLGAILGPLLGSSLIL 165 (422)
T ss_pred hHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 88888999999999999999988776554
No 209
>PRK15462 dipeptide/tripeptide permease D; Provisional
Probab=97.71 E-value=0.043 Score=53.06 Aligned_cols=41 Identities=15% Similarity=0.046 Sum_probs=30.1
Q ss_pred hhhhhhhhccccccCcchhhHHHHHHHHH-HHHHhHHHHHHH
Q 018373 270 TITVATIYAPEIYPTSARTTGFGVASSLG-KVGGMVCPLVAV 310 (357)
Q Consensus 270 ~~~~~~~~~~ElfPt~~R~~~~~~~~~~~-~l~~~~~p~~~~ 310 (357)
..++....++++-|.+.|+..+|.-...+ .+++.++..+..
T Consensus 394 ~sPvgls~~~~laP~~~~g~~mg~w~l~~~~~~~~~~g~~~~ 435 (493)
T PRK15462 394 IDPVAMSQITRIEIPGVTGVLTGIYMLLSGAIANYLAGVIAD 435 (493)
T ss_pred HChHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34677889999999999999999986643 455555544433
No 210
>PRK11128 putative 3-phenylpropionic acid transporter; Provisional
Probab=97.70 E-value=0.0025 Score=59.70 Aligned_cols=133 Identities=11% Similarity=0.085 Sum_probs=70.1
Q ss_pred HHHhhhhhHHHHHHHHHHhhchhHHHHHH-HHHHHHHHHHHHh-hhhhHHHHHHHHHHHHHhhhhhhhhhhhccccccCc
Q 018373 208 IASLAELPGLILSAIIVDKIGRKLSMVLM-FVSACIFLLPLVF-HQSAVVTTVLLFGVRMCVTGTITVATIYAPEIYPTS 285 (357)
Q Consensus 208 i~~~~~~~~~~~~~~l~d~~GRR~~~~~~-~~~~~i~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ElfPt~ 285 (357)
+..+...++.++.+.+.||+|||....-. ...+.+....... .++.+...+..+...+......+....+..+. .+
T Consensus 47 ~~~l~~~l~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~l~g~~~~~~~~~~~a~~~~~--~~ 124 (382)
T PRK11128 47 AGLVARFLGSLLIAPRVKDPSQLIPALRLLALLTLLFAVAFWFGAHSFWLLFVAIGLFNLFFSPLVPLTDALANTW--QK 124 (382)
T ss_pred HHHHHHHhhhHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHcccccHHHHHHHHH--Hh
Confidence 34556677788899999999985322110 1111111111111 12222211211212222222233444455543 34
Q ss_pred chhhHHHHHHHHHHHHHhHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHHhhccccc
Q 018373 286 ARTTGFGVASSLGKVGGMVCPLVAVGLVTSCHLRLAVILFEVVFVLAIASSLLFPFET 343 (357)
Q Consensus 286 ~R~~~~~~~~~~~~l~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~pet 343 (357)
.|+.+.+.....+.++..++|.+...+.+..++...+++.++..++..+ ..+..||.
T Consensus 125 ~~~~a~~~~~~~~~lg~~igp~lgg~l~~~~g~~~~f~~~~~~~~~~~~-~~~~~~~~ 181 (382)
T PRK11128 125 QIGLDYGKVRLWGSIAFVIGSALTGKLVSWFGEQAILWILTAGVASMLL-GQLLRPTI 181 (382)
T ss_pred hccCCcchHHHHHHHHHHHHHHHHHHHHHHcChhHHHHHHHHHHHHHHH-HHHccCCC
Confidence 5778888888888899999999988887776666666555544343333 33344554
No 211
>TIGR00805 oat sodium-independent organic anion transporter. Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange.
Probab=97.68 E-value=0.0014 Score=65.61 Aligned_cols=67 Identities=12% Similarity=0.099 Sum_probs=47.0
Q ss_pred hhhhhhcccc--cchhHHHHHHHHHHHHHHHHHHHHHHHhcC--------------------c--chHHHHHHhhHHHHH
Q 018373 7 SWGIISDNYG--RRGRWMVALSAFWTAGTIFEASLAWVVMTR--------------------L--NWRWLLAFSSVPSFA 62 (357)
Q Consensus 7 ~~g~~~d~~g--rrg~~~~~~~~~~~~G~l~~~~i~~~~~~~--------------------~--~WR~~~~~~~~p~l~ 62 (357)
...++.|... +|+++.++.+.+..+|..++.+++..+... | +||..|++.++..++
T Consensus 193 ~~~~i~d~~~~~~~~~~~~i~~~~~~iG~~lG~llgg~l~~~~~d~~~~~~~~~~l~~~dprWiGaWwl~Fli~g~l~~l 272 (633)
T TIGR00805 193 GISYIDDFAKSKNSPLYIGILESIAVFGPAFGYLLGSFCLQIYVDTGSVNTEDVILTPTDPRWIGAWWIGFLICGGVALL 272 (633)
T ss_pred CchhhhccCCccccHHHHHHHHHHHHhhhHHHHHHHHHHHhcccccccCCCCCCCCCCCCccHHHHHHHHHHHHHHHHHH
Confidence 3467778765 468888999998888888887776443211 1 388888888877777
Q ss_pred HHHHHhcCCCC
Q 018373 63 LLLFYGLAPES 73 (357)
Q Consensus 63 ~~~~~~~lpES 73 (357)
..+..+++||.
T Consensus 273 ~~v~l~~~p~~ 283 (633)
T TIGR00805 273 TSIPFFFFPKA 283 (633)
T ss_pred HHHHHHhCccc
Confidence 66666667764
No 212
>TIGR00889 2A0110 nucleoside transporter. This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli.
Probab=97.59 E-value=0.0071 Score=57.46 Aligned_cols=39 Identities=21% Similarity=0.220 Sum_probs=28.4
Q ss_pred HHHHhhhhhHHHHHHHHHHhhch-hHHHHHHHHHHHHHHH
Q 018373 207 FIASLAELPGLILSAIIVDKIGR-KLSMVLMFVSACIFLL 245 (357)
Q Consensus 207 ~i~~~~~~~~~~~~~~l~d~~GR-R~~~~~~~~~~~i~~~ 245 (357)
.+..++.+++.++.+.+.||+|| |+.+..+.++..+...
T Consensus 45 a~~~~~~~i~~~~~g~l~dr~g~~r~~~~~~~~~~~~~~~ 84 (418)
T TIGR00889 45 SSTGIAAILMPILVGIIADKWLSAQKVYAVCHFAGALLLF 84 (418)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHH
Confidence 45577788999999999999965 6666666655544443
No 213
>PRK09669 putative symporter YagG; Provisional
Probab=97.59 E-value=0.001 Score=63.67 Aligned_cols=137 Identities=13% Similarity=0.155 Sum_probs=73.2
Q ss_pred HHHHhhhhhHHHHHHHHHHh----hchh-HHHHHHHHHHHHHHHHHHh-hh---hh--HHHHHHHHHHHHHhhhhhhhhh
Q 018373 207 FIASLAELPGLILSAIIVDK----IGRK-LSMVLMFVSACIFLLPLVF-HQ---SA--VVTTVLLFGVRMCVTGTITVAT 275 (357)
Q Consensus 207 ~i~~~~~~~~~~~~~~l~d~----~GRR-~~~~~~~~~~~i~~~~~~~-~~---~~--~~~~~~~~~~~~~~~~~~~~~~ 275 (357)
.+.-+...+..++.|+++|| +||| +.++++.+..++....+.. +. .. .+..+.......+.........
T Consensus 52 ~i~~i~dai~dp~~G~lsD~~~~r~Grrrp~il~~~~~~~i~~~l~f~~p~~~~~~~~~~~~~~~~l~~~~~t~~~ip~~ 131 (444)
T PRK09669 52 LVVRVLDAVTDPLMGALVDRTRTRHGQFRPYLLWFAIPFGVVCLLTFYTPDFGATGKIIYACVTYILLSLVYTAINVPYC 131 (444)
T ss_pred HHHHHHHHcccceeeEeeecCCCCCCCcchhHHHHHHHHHHHHHHHHhCCCCCcchHHHHHHHHHHHHHHHHHhhcchHH
Confidence 34445567777888999998 6775 4455555555444433222 21 11 1111111111111122222345
Q ss_pred hhcccccc-CcchhhHHHHHHHHHHHHHhHHHHHHHHHHhhcc-------hhhHHHHHHHHHHHHHHHHhhccccc
Q 018373 276 IYAPEIYP-TSARTTGFGVASSLGKVGGMVCPLVAVGLVTSCH-------LRLAVILFEVVFVLAIASSLLFPFET 343 (357)
Q Consensus 276 ~~~~ElfP-t~~R~~~~~~~~~~~~l~~~~~p~~~~~l~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~pet 343 (357)
+..+|+.+ .+.|....++....+.+++.+++.+..++....+ ....+.++++++.++.++.++..+|.
T Consensus 132 al~~~~t~~~~eR~~l~~~r~~~~~~G~~i~~~~~~pl~~~~~~~~~~~g~~~~~~i~~ii~~v~~~~~~~~~~e~ 207 (444)
T PRK09669 132 AMPGAITNDPRERHSLQSWRFALSFIGGLIVSVIALPLVDILGKGDEQKGYFYAMMVMGLLGVVLFFCCFFMTKER 207 (444)
T ss_pred HhHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhHHHHHHHHHHHHHHHHHHHhCCeEEe
Confidence 68899984 4779998888888888887777665544443321 11233445555555545555544443
No 214
>TIGR00806 rfc RFC reduced folate carrier. Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined.
Probab=97.53 E-value=0.0037 Score=59.37 Aligned_cols=61 Identities=15% Similarity=0.079 Sum_probs=44.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHh---hHHHHHHHHHHhcCCCChHHHHHc
Q 018373 19 GRWMVALSAFWTAGTIFEASLAWVVMTRLNWRWLLAFS---SVPSFALLLFYGLAPESPRYLCAK 80 (357)
Q Consensus 19 g~~~~~~~~~~~~G~l~~~~i~~~~~~~~~WR~~~~~~---~~p~l~~~~~~~~lpESP~wL~~~ 80 (357)
++..+....+..+|..+++.++.. ....+||...-+. .....+.++.-+++|-.+|=+.-|
T Consensus 149 ~ratsi~~sg~~vG~~Ia~~L~ql-l~s~gWr~y~~Ln~Isl~s~~~a~~~a~~LP~~~~sl~f~ 212 (511)
T TIGR00806 149 QRAAAYSRAAVLLGVFLSSVLGQL-LVTLGWISYSTLNIISLVFMTFSVFLALFLKRPKRSLFFN 212 (511)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-HHhcCchhHHHHHHHHHHHHHHHHHHHHhCCCCchhhhhc
Confidence 888899999999999998888766 4467999865544 445556677778899555544433
No 215
>PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions. Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins.
Probab=97.52 E-value=0.0063 Score=58.64 Aligned_cols=139 Identities=20% Similarity=0.246 Sum_probs=86.2
Q ss_pred HHHHhhhhhHHHHHHHHHHhhchhHHHHH-HHHHHHHHHHHHHhh-hhhH-HHHHHHHHHHHHhhhhhhhhhhhcccccc
Q 018373 207 FIASLAELPGLILSAIIVDKIGRKLSMVL-MFVSACIFLLPLVFH-QSAV-VTTVLLFGVRMCVTGTITVATIYAPEIYP 283 (357)
Q Consensus 207 ~i~~~~~~~~~~~~~~l~d~~GRR~~~~~-~~~~~~i~~~~~~~~-~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ElfP 283 (357)
.+..+...+-.++-|-++|+-|||+.++. ...++.++...+.+. .+.+ +..++......+..........+.+|+-+
T Consensus 77 sis~l~~all~P~lGa~aD~~~~Rk~~l~~~~~~~~~~~~~l~~v~~~~~~~~~~l~iia~v~~~~~~vfyna~LP~la~ 156 (477)
T PF11700_consen 77 SISGLLQALLAPFLGAIADYGGRRKRFLLIFTLLGVLATALLWFVSPGQWWLALVLFIIANVGYEASNVFYNAYLPDLAR 156 (477)
T ss_pred HHHHHHHHHHHHHHHHHHcccccchHHHHHHHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHHHHHHHhHhhcC
Confidence 34556666667788899999987777654 444444444444442 2222 22222222223333444556789999999
Q ss_pred Ccch--------------------------hhHHHHHHHHHHHHHhHHHHHHHHHHhhcc-h-------hhHHHHHHHHH
Q 018373 284 TSAR--------------------------TTGFGVASSLGKVGGMVCPLVAVGLVTSCH-L-------RLAVILFEVVF 329 (357)
Q Consensus 284 t~~R--------------------------~~~~~~~~~~~~l~~~~~p~~~~~l~~~~~-~-------~~~~~~~~~~~ 329 (357)
.+.+ ++..+...+.|.+|+++.-.+...+....+ . ...+.+.+++-
T Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vS~~G~a~Gy~G~~v~l~i~l~~~~~~~~~~~~~~~~r~~~~~~a~ww 236 (477)
T PF11700_consen 157 PEPRVRAAREPSANGNISDSEYEAVDSLTRGRVSGLGWALGYIGGLVALLISLLLVISPGSTASNTWAIRVAFLIVALWW 236 (477)
T ss_pred CChhhhhhhhhhccCCCChhhhhhHHHhhhchhHHHHHHHHHHHHHHHHHHHHHHHHcCCCccccchhhhHHHHHHHHHH
Confidence 9988 999999999999998776555433322211 1 23345555665
Q ss_pred HHHHHHHhhccccccC
Q 018373 330 VLAIASSLLFPFETMG 345 (357)
Q Consensus 330 ~~~~~~~~~~~pet~~ 345 (357)
++..+..++..||.++
T Consensus 237 ~vfsiP~~~~~~~~~~ 252 (477)
T PF11700_consen 237 LVFSIPLFLWLPDRPG 252 (477)
T ss_pred HHHHHHHHHhCCCCCC
Confidence 6666777777888876
No 216
>TIGR00788 fbt folate/biopterin transporter. The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity.
Probab=97.49 E-value=0.0065 Score=58.63 Aligned_cols=125 Identities=14% Similarity=0.140 Sum_probs=70.1
Q ss_pred HHHHHHHHhhc-----hhHHHHHHHHHHH-HHHHHHHhhhh-hHHHHHHHHHHHHHhhhhhhhhhhhccccccCcchhhH
Q 018373 218 ILSAIIVDKIG-----RKLSMVLMFVSAC-IFLLPLVFHQS-AVVTTVLLFGVRMCVTGTITVATIYAPEIYPTSARTTG 290 (357)
Q Consensus 218 ~~~~~l~d~~G-----RR~~~~~~~~~~~-i~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ElfPt~~R~~~ 290 (357)
.+.+.++||++ ||+.++.+.+..+ +....+....+ .....++.+...++....-...-.+..|..+ +.++.+
T Consensus 78 ~l~g~l~D~~~i~G~rRr~~l~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~a~~dv~~da~~~e~~~-~~~~~~ 156 (468)
T TIGR00788 78 PFAGVMSDTFPLFGYTKRWYLVLSGLLGSAILYGLLPGKVSSAKVAAAFIFLAALAKALYDVLVDSLYSERIR-ESPSAG 156 (468)
T ss_pred HHHHHHHHhcCCCCccchHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHHHHhHHHHHhhhhh-cCCCcC
Confidence 35899999997 6666666655542 32222222222 1121112222222222222356678889988 555443
Q ss_pred ---HHHHHHHHHHHHhHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHHhhcccccc
Q 018373 291 ---FGVASSLGKVGGMVCPLVAVGLVTSCHLRLAVILFEVVFVLAIASSLLFPFETM 344 (357)
Q Consensus 291 ---~~~~~~~~~l~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~pet~ 344 (357)
.++.+..-.+|..+++.+...+.+..++...+++.+++.++. .+..++.||.+
T Consensus 157 ~~~~s~~~~~~~~G~~vg~~l~G~l~~~~~~~~~f~~~a~l~ll~-~~~~~~~~E~~ 212 (468)
T TIGR00788 157 PSLVSWMWGASATGGLISSLLGGPLLDKTLTRILFLITAALLLLQ-LFVSNLSKERR 212 (468)
T ss_pred CCeeeHHHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHH-HHHHHhccccc
Confidence 444455445778888888887777656566666666666655 44445567864
No 217
>KOG3764 consensus Vesicular amine transporter [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.44 E-value=0.00073 Score=61.90 Aligned_cols=62 Identities=11% Similarity=0.077 Sum_probs=46.1
Q ss_pred hhhhcccc---cchhHHHHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHhhHHHHHHHHHHhcC
Q 018373 9 GIISDNYG---RRGRWMVALSAFWTAGTIFEASLAWVVMTRLNWRWLLAFSSVPSFALLLFYGLA 70 (357)
Q Consensus 9 g~~~d~~g---rrg~~~~~~~~~~~~G~l~~~~i~~~~~~~~~WR~~~~~~~~p~l~~~~~~~~l 70 (357)
++++|+++ +||+.++..-.+..+|.+++..++-.+.+.-|.+.+|++.++..++-..+.+++
T Consensus 182 amlAd~f~~d~er~~vmGialgfislG~lvgPpfGGilYe~~Gk~aPFlVL~~v~Lld~~L~l~v 246 (464)
T KOG3764|consen 182 AMLADVFPEDNERGSVMGIALGFISLGVLVGPPFGGILYEFAGKSAPFLVLAIVLLLDGALQLLV 246 (464)
T ss_pred HHHHHHcccchhhhHHHHHHHHHHhccceecCCcccchHhhcCCcCcHHHHHHHHHHHHHHHHhe
Confidence 44555544 348888888888888888888777666666799999999988877766665544
No 218
>KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]
Probab=97.44 E-value=0.002 Score=62.12 Aligned_cols=138 Identities=14% Similarity=0.112 Sum_probs=96.0
Q ss_pred HHHhhhhhHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhhhhccccccCcch
Q 018373 208 IASLAELPGLILSAIIVDKIGRKLSMVLMFVSACIFLLPLVFHQSAVVTTVLLFGVRMCVTGTITVATIYAPEIYPTSAR 287 (357)
Q Consensus 208 i~~~~~~~~~~~~~~l~d~~GRR~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ElfPt~~R 287 (357)
+..++-+++.+.++++.||+.-.+.+..+.++-+++.+.....++.....++-++.+++-.+.++..-.+.+--|..+-|
T Consensus 89 ~F~v~Yii~~~p~~~L~~r~~ls~~l~~~~~~w~~~~~~~~~~~s~~~~ialr~llGl~es~~wP~~~~~lg~wy~~~e~ 168 (495)
T KOG2533|consen 89 VFYVGYIIGQFPSGLLGDRFPLSKGLSVSGILWGLFGFLTAAVHSFPGLIALRFLLGLFESGGWPGVVAILGNWYGKSER 168 (495)
T ss_pred HHHHHHHHHHhhHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcccchHHHHHHHhhcChhhh
Confidence 44566788889999999999966666555554444443222222222222223333444456678788889999999999
Q ss_pred hhHHHHHHHHHHHHHhHHHHHHHHHHh------hcchhhHHHHHHHHHHHHHHHHhhccccccC
Q 018373 288 TTGFGVASSLGKVGGMVCPLVAVGLVT------SCHLRLAVILFEVVFVLAIASSLLFPFETMG 345 (357)
Q Consensus 288 ~~~~~~~~~~~~l~~~~~p~~~~~l~~------~~~~~~~~~~~~~~~~~~~~~~~~~~pet~~ 345 (357)
++-+|+-++.+.+++++++++...+.. ..++.+.|++-+++.++.++++++++|+-..
T Consensus 169 g~r~~~~~a~~~~g~i~ggliA~g~~~~~~~~~~~gW~~~FiI~G~i~~~~gi~~f~~lp~~P~ 232 (495)
T KOG2533|consen 169 GLRMGIWYASASLGNIFGGLIAYGVFKLNGSGGLAGWRWLFIIEGVITLVLGIVVFFFLPDNPS 232 (495)
T ss_pred hhhHHHHHHhcchhhHHHHHHHHHhhhhcCCCCcCCceeehhHHHHHHHHHHheEEEEecCChh
Confidence 999999999999999999888776432 1244567788888888888888888886544
No 219
>PRK10429 melibiose:sodium symporter; Provisional
Probab=97.43 E-value=0.0046 Score=59.75 Aligned_cols=137 Identities=13% Similarity=0.111 Sum_probs=72.0
Q ss_pred HHHHhhhhhHHHHHHHHHH----hhch-hHHHHHHHHHHHHHHHHHHhhh--hhH----HHHHHHHHHHHHhhhhhhhhh
Q 018373 207 FIASLAELPGLILSAIIVD----KIGR-KLSMVLMFVSACIFLLPLVFHQ--SAV----VTTVLLFGVRMCVTGTITVAT 275 (357)
Q Consensus 207 ~i~~~~~~~~~~~~~~l~d----~~GR-R~~~~~~~~~~~i~~~~~~~~~--~~~----~~~~~~~~~~~~~~~~~~~~~ 275 (357)
.+.-+...+..++.|+++| |+|| |+.++.+...+++....+.... ... +..+.......+.........
T Consensus 49 ~i~ri~dai~dp~~G~lsD~t~sr~Grrrp~il~g~i~~~i~~~llf~~p~~~~~~~~~~~~~~~~l~~~~~t~~~ip~~ 128 (473)
T PRK10429 49 LVARIWDAINDPIMGWIVNNTRSRWGKFKPWILIGTLANSVVLFLLFSAHLFEGTAQYVFVCVTYILWGMTYTIMDIPFW 128 (473)
T ss_pred HHHHHHHHHhhchheeehhcCCCCCCCcchhHhhhhHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHHHHHHHHHcchHH
Confidence 3445566777788899999 5598 5555666666655544443311 111 111111111111112222345
Q ss_pred hhccccc-cCcchhhHHHHHHHHHHHHHhHHHHHHHHHHhhcc---h----hhHHHHHHHHHHHHHHHHhhccccc
Q 018373 276 IYAPEIY-PTSARTTGFGVASSLGKVGGMVCPLVAVGLVTSCH---L----RLAVILFEVVFVLAIASSLLFPFET 343 (357)
Q Consensus 276 ~~~~Elf-Pt~~R~~~~~~~~~~~~l~~~~~p~~~~~l~~~~~---~----~~~~~~~~~~~~~~~~~~~~~~pet 343 (357)
...+|+- +.+.|+...++-...+.+++++.+.+..++.+..+ . .....+++++..++.++.++..+|.
T Consensus 129 al~~~lt~~~~eR~~l~~~~~~~~~ig~~~~~~~~~~~~~~~g~~~~~~g~~~~~~i~~~~~~~~~~~~~~~~~e~ 204 (473)
T PRK10429 129 SLVPTLTLDKREREQLVPYPRFFASLAGFVTAGFTLPFVNYVGGGDRGFGFQMFTLVLIAFFIVSTIITLRNVHEV 204 (473)
T ss_pred hhhHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhHHHHHHHHHHHHHHHHHHHHcCceec
Confidence 6789998 57999998888766666665555544333322211 1 1122344444445555555555664
No 220
>KOG2563 consensus Permease of the major facilitator superfamily [General function prediction only]
Probab=97.42 E-value=0.0089 Score=55.85 Aligned_cols=144 Identities=17% Similarity=0.133 Sum_probs=88.3
Q ss_pred HHHhhhhhHHHHHHHHHHhhchhH-HHHHHHHHHHHH-HHHHHhhh---hhHHHHHHHHHHHHHhhhhhhhhhhhccccc
Q 018373 208 IASLAELPGLILSAIIVDKIGRKL-SMVLMFVSACIF-LLPLVFHQ---SAVVTTVLLFGVRMCVTGTITVATIYAPEIY 282 (357)
Q Consensus 208 i~~~~~~~~~~~~~~l~d~~GRR~-~~~~~~~~~~i~-~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~Elf 282 (357)
...+++++++++++.++||.+.-+ .++..+....+. +....+.. .............++..+..++-.-+..|.-
T Consensus 309 l~iv~Gmlga~~~gii~Dktk~fk~~~~v~~~~~~v~~~~l~~~t~~~~~~viv~~t~~~~g~~~~~~~Pig~ElgvE~T 388 (480)
T KOG2563|consen 309 LMIVAGMLGALASGIIADKTKKFKLTTLVLYLFALVGTLMLLTCTLFLGDSVIVFTTCGLLGFFGTGYLPIGFELGVETT 388 (480)
T ss_pred HHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhccCCceEehhhhHHHHHHhhcCCCCcceeeeeeec
Confidence 345677899999999999986443 344444433333 22222211 1111111122223344455566666777877
Q ss_pred cCcchhhHHHHHHHHHHHHHhHHHHHHHHHHhhcc----hhhHHHHHHHHHHHHHHHHhhccccccCcchhhh
Q 018373 283 PTSARTTGFGVASSLGKVGGMVCPLVAVGLVTSCH----LRLAVILFEVVFVLAIASSLLFPFETMGRELKDT 351 (357)
Q Consensus 283 Pt~~R~~~~~~~~~~~~l~~~~~p~~~~~l~~~~~----~~~~~~~~~~~~~~~~~~~~~~~pet~~~~l~e~ 351 (357)
-+..-++..|+.+..+.+.++.-++......+..+ ....-+..+..+.+..+++.++.|+-+++..|+.
T Consensus 389 yPv~E~tSsGll~~~gq~f~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~~lva~~r~~y~R~~~e~~ 461 (480)
T KOG2563|consen 389 YPVAEGTSSGLLNLSGQIFGVILVFIMGILAEDLGPPGNTFPANIFLTVSALLGAILVAFFRPDYRRLRAEAG 461 (480)
T ss_pred cccCCcccceeEEeehhHHHHHHHHHHHHHhhccCCCCCCccchhHhHHHHHHHHHHHhhhhhhHHhHhhhhc
Confidence 77788899999999999988887777665555433 2112344556666777888888888877777654
No 221
>KOG2816 consensus Predicted transporter ADD1 (major facilitator superfamily) [General function prediction only]
Probab=97.39 E-value=0.014 Score=55.98 Aligned_cols=104 Identities=16% Similarity=0.218 Sum_probs=65.3
Q ss_pred HHhhhhhHHHHHH-HHHHhhchhHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhhhhccccccCcch
Q 018373 209 ASLAELPGLILSA-IIVDKIGRKLSMVLMFVSACIFLLPLVFHQSAVVTTVLLFGVRMCVTGTITVATIYAPEIYPTSAR 287 (357)
Q Consensus 209 ~~~~~~~~~~~~~-~l~d~~GRR~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ElfPt~~R 287 (357)
.+..+.++.++.. .+...+|-|+....+...-.+......+.+..+....... ...+.....+....+.+-+-..+.|
T Consensus 286 ~~~~~~i~~l~~~~~l~~~l~~~~~i~lGl~~~~~~~~~~af~~~~w~~~~~~v-~~~~~~~~~pa~~s~~s~~v~~~e~ 364 (463)
T KOG2816|consen 286 VSILGIISQLLLLPLLSSILGEKRLISLGLLSEFLQLLLFAFATETWMMFAAGV-VVALAGIVFPAIRAFASILVSPEEQ 364 (463)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhHhhHHHHHHHHHHHHHHHhccchhhhHHHH-HHHhhcchhHHHHhHHHhhcccccc
Confidence 3455566666655 7777889888655555544444444444443332111111 1111123345667778888899999
Q ss_pred hhHHHHHHHHHHHHHhHHHHHHHHHH
Q 018373 288 TTGFGVASSLGKVGGMVCPLVAVGLV 313 (357)
Q Consensus 288 ~~~~~~~~~~~~l~~~~~p~~~~~l~ 313 (357)
++..++...+-.+.++++|.++..+.
T Consensus 365 g~v~~~is~i~~l~~~~~~~~~~~i~ 390 (463)
T KOG2816|consen 365 GKVFGIISGIEGLSGVVSPALYGNIF 390 (463)
T ss_pred cchhhHHHHHHHHhhhhhHHHHHHHH
Confidence 99999999999999999988776543
No 222
>PRK11462 putative transporter; Provisional
Probab=97.39 E-value=0.011 Score=57.02 Aligned_cols=137 Identities=13% Similarity=0.093 Sum_probs=76.8
Q ss_pred HHHHhhhhhHHHHHHHHHHh----hchhHH-HHHHHHHHHHHHHHHHh-hh-h--h--HHHHHHHHHHHHHhhhhhhhhh
Q 018373 207 FIASLAELPGLILSAIIVDK----IGRKLS-MVLMFVSACIFLLPLVF-HQ-S--A--VVTTVLLFGVRMCVTGTITVAT 275 (357)
Q Consensus 207 ~i~~~~~~~~~~~~~~l~d~----~GRR~~-~~~~~~~~~i~~~~~~~-~~-~--~--~~~~~~~~~~~~~~~~~~~~~~ 275 (357)
.+.-+...+.-++.|+++|| +|||+- ++++.+..++....+.. +. + . .+..+.+.....+........+
T Consensus 52 ~~~ri~Dai~Dp~~G~~~D~t~~r~Gr~rp~il~g~i~~~i~~~llf~~p~~s~~~~~~y~~~~~~~~~~~~t~~~ipy~ 131 (460)
T PRK11462 52 LVARALDAISDPCMGLLADRTRSRWGKFRPWVLFGALPFGIVCVLAYSTPDLSMNGKMIYAAITYTLLTLLYTVVNIPYC 131 (460)
T ss_pred HHHHHHHHHHhhhheehhccCCCCCCCcchhHhHHHHHHHHHHHHHHhCCCCCcchHHHHHHHHHHHHHHHHHHHhccHH
Confidence 34445566777888999996 587655 44565555555444433 21 1 1 1111111111112222222356
Q ss_pred hhcccccc-CcchhhHHHHHHHHHHHHHhHHHHHHHHHHhhcc-------hhhHHHHHHHHHHHHHHHHhhccccc
Q 018373 276 IYAPEIYP-TSARTTGFGVASSLGKVGGMVCPLVAVGLVTSCH-------LRLAVILFEVVFVLAIASSLLFPFET 343 (357)
Q Consensus 276 ~~~~ElfP-t~~R~~~~~~~~~~~~l~~~~~p~~~~~l~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~pet 343 (357)
+..+|+-+ .+.|+...++-...+.+++.+++.+..++.+..+ ......+++++.+++.++.+...+|.
T Consensus 132 al~~~lt~d~~eRt~l~s~r~~~~~iG~~~~~~~~~plv~~~g~~~~~~g~~~~~~i~~ii~~i~~~i~~~~~kE~ 207 (460)
T PRK11462 132 ALGGVITNDPTQRISLQSWRFVLATAGGMLSTVLMMPLVNLIGGDNKPLGFQGGIAVLSVVAFMMLAFCFFTTKER 207 (460)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhHHHHHHHHHHHHHHHHHHHHhcceec
Confidence 78889988 6999999999998888887777766555544332 11123445555555555555545554
No 223
>PF13347 MFS_2: MFS/sugar transport protein
Probab=97.30 E-value=0.0011 Score=63.07 Aligned_cols=133 Identities=16% Similarity=0.141 Sum_probs=78.4
Q ss_pred HhhhhhHHHHHHHHHH----hhchhHHHH-HHHHHHHHHHHHHHhh-h---hhH----HHHHHHHHHHHHhhhhhhhhhh
Q 018373 210 SLAELPGLILSAIIVD----KIGRKLSMV-LMFVSACIFLLPLVFH-Q---SAV----VTTVLLFGVRMCVTGTITVATI 276 (357)
Q Consensus 210 ~~~~~~~~~~~~~l~d----~~GRR~~~~-~~~~~~~i~~~~~~~~-~---~~~----~~~~~~~~~~~~~~~~~~~~~~ 276 (357)
-+...+..++.|.++| |+|||+-.+ ++....++....+... . +.. +..+..+....+.........+
T Consensus 47 ~i~dai~dp~~G~~sDr~~tr~Grrrp~~l~g~i~~~~~~~llf~~~p~~~~~~~~~~~~~~~~~l~~~~~t~~~i~~~a 126 (428)
T PF13347_consen 47 RIWDAITDPLIGYLSDRTRTRWGRRRPWILIGAILLALSFFLLFSPPPAGLSFTAKLVWLFVFYILFDIAYTFVQIPYNA 126 (428)
T ss_pred HHhhhhcCCcEEEEEeeecccccccceEeehhhHHHHHHHHHhhccccchhhhhhHHHHHHHHHHHHHHhhhhccCchhh
Confidence 3444555568899999 799777654 5656665555544432 1 111 1111111111121222234567
Q ss_pred hccccccC-cchhhHHHHHHHHHHHHHhHHHHHHHHHHhhcc-------hhhHHHHHHHHHHHHHHHHhhcccc
Q 018373 277 YAPEIYPT-SARTTGFGVASSLGKVGGMVCPLVAVGLVTSCH-------LRLAVILFEVVFVLAIASSLLFPFE 342 (357)
Q Consensus 277 ~~~ElfPt-~~R~~~~~~~~~~~~l~~~~~p~~~~~l~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~pe 342 (357)
+.+|+.+. +.|....+.-...+.+++.+...+.+.+.+..+ ......+++++.+++.++..+..+|
T Consensus 127 l~~~lt~~~~~R~~l~~~~~~~~~~g~~l~~~~~~~l~~~~g~~~~~~~~~~~~~v~~iv~~v~~~i~~~~~ke 200 (428)
T PF13347_consen 127 LIPELTPDPDERTRLSSWRMIFSMIGSLLASFLAPILVSWFGGGDTSNGYRWMALVLAIVGLVFFLITFFFVKE 200 (428)
T ss_pred cCccccccHhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhhccCccchHHHHHHHHHHHHHHHHhhhhhheeee
Confidence 89999995 689999999988888887666655555443322 1233455666667777777777777
No 224
>KOG0253 consensus Synaptic vesicle transporter SV2 (major facilitator superfamily) [General function prediction only]
Probab=97.28 E-value=0.013 Score=53.62 Aligned_cols=135 Identities=19% Similarity=0.184 Sum_probs=81.9
Q ss_pred HHHhhhhhHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhhhhccccccCcch
Q 018373 208 IASLAELPGLILSAIIVDKIGRKLSMVLMFVSACIFLLPLVFHQSAVVTTVLLFGVRMCVTGTITVATIYAPEIYPTSAR 287 (357)
Q Consensus 208 i~~~~~~~~~~~~~~l~d~~GRR~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ElfPt~~R 287 (357)
...++..++...-+.+.|++|||+.+..+....++.-+.-....+-.....+-....+. .++++..-++-.|.-|+..|
T Consensus 121 ~v~~gmllga~~w~l~~d~~grr~~f~~T~l~t~v~~~is~~spnf~~L~~f~~l~~~g-~gg~pv~~~~yle~lp~~~r 199 (528)
T KOG0253|consen 121 SVFLGMLVGAMVWGLSADTIGRRKGFNLTFLVTGVFGVISGASPNFASLCVFRALWGFG-VGGLPVDSAIYLEFLPSSHR 199 (528)
T ss_pred HHHhhhhhhhhhhheehhhhhcchhhhhhHHHHHHHHHhhcCCCCeehhhHHHHHHhcc-CCCccHhHHHHHHhccCcCC
Confidence 34566788888889999999999999888877766655433322222222233333332 33466667788899999999
Q ss_pred hhHHHHHHHHHHHHHhHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHHhhccccccC
Q 018373 288 TTGFGVASSLGKVGGMVCPLVAVGLVTSCHLRLAVILFEVVFVLAIASSLLFPFETMG 345 (357)
Q Consensus 288 ~~~~~~~~~~~~l~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~pet~~ 345 (357)
.+-+-.. +.-.++.+....+.-..+...++. ..+++..+.+..+....+..||..+
T Consensus 200 ~~~~V~~-~~waig~v~ea~law~vm~~~gwr-~~l~~~~~pl~~~a~f~~w~~ESpR 255 (528)
T KOG0253|consen 200 WLLTVMS-FFWAIGQVFEALLAWGVMSNFGWR-YLLFTSSTPLMFAARFLVWVYESPR 255 (528)
T ss_pred CcchhHH-HHHHHHHHHHHHHHHHHHHhhhHH-HHHHHHHhHHHHHHHHHhhcccCcc
Confidence 9887766 443456666555543334444433 2344444444334444555678654
No 225
>KOG4686 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]
Probab=97.07 E-value=0.028 Score=49.60 Aligned_cols=103 Identities=16% Similarity=0.094 Sum_probs=65.2
Q ss_pred hhhhHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHH-Hh-hhhhHHHHHHHHHHHHHhhhhhhhhhhhccccccCcchhh
Q 018373 212 AELPGLILSAIIVDKIGRKLSMVLMFVSACIFLLPL-VF-HQSAVVTTVLLFGVRMCVTGTITVATIYAPEIYPTSARTT 289 (357)
Q Consensus 212 ~~~~~~~~~~~l~d~~GRR~~~~~~~~~~~i~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ElfPt~~R~~ 289 (357)
...+.+.+.+.++||.||+...+.+..+..+..=.. .+ ..++...+.+ ... .........|-.++-+-|-+.-+|
T Consensus 312 Isav~spvfg~i~Dk~G~n~~wv~~a~~~tl~~H~~l~Ft~lsPy~~m~~-lGL--sysllAcslWP~va~~vpE~qLGT 388 (459)
T KOG4686|consen 312 ISAVLSPVFGAISDKYGFNLWWVASACILTLLGHSGLFFTFLSPYTSMTF-LGL--SYSLLACSLWPCVASLVPEEQLGT 388 (459)
T ss_pred hhhhhhhhHHHhHhhhcceehhHHHHHHHHHHHhhhHHhhhccHHHHHHH-Hhh--hHHHHHHHHhhhhhhhCCHHHhcc
Confidence 345567788999999999999887655433321111 11 1122222111 111 111111245777888889999999
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHhhcc
Q 018373 290 GFGVASSLGKVGGMVCPLVAVGLVTSCH 317 (357)
Q Consensus 290 ~~~~~~~~~~l~~~~~p~~~~~l~~~~~ 317 (357)
|.|+++.+.+++-.+.|.+...+.+.-+
T Consensus 389 aygf~qsIqNLgla~i~Iiag~i~d~~g 416 (459)
T KOG4686|consen 389 AYGFIQSIQNLGLAFIPIIAGFIADGDG 416 (459)
T ss_pred hHHHHHHHHhhhhhHHhhhhheeecCCC
Confidence 9999999999998888888876665443
No 226
>TIGR00880 2_A_01_02 Multidrug resistance protein.
Probab=97.01 E-value=0.0023 Score=49.76 Aligned_cols=55 Identities=27% Similarity=0.351 Sum_probs=34.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHhhHHHHHHH-HHHhcCCCC
Q 018373 19 GRWMVALSAFWTAGTIFEASLAWVVMTRLNWRWLLAFSSVPSFALL-LFYGLAPES 73 (357)
Q Consensus 19 g~~~~~~~~~~~~G~l~~~~i~~~~~~~~~WR~~~~~~~~p~l~~~-~~~~~lpES 73 (357)
++..+..+....+|..++..+...+.+..+||..+.+..+..++.. ...+..||+
T Consensus 86 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 141 (141)
T TIGR00880 86 GVALGLMSAGIALGPLLGPPLGGVLAQFLGWRAPFLFLAILALAAFILLAFLLPET 141 (141)
T ss_pred hHHHHHHHHhHHHHHHHhHHhHHHHhcccchHHHHHHHHHHHHHHHHHHhhcCCCC
Confidence 5555666666666666666555555556789998888776655543 444556664
No 227
>PF05631 DUF791: Protein of unknown function (DUF791); InterPro: IPR008509 This family consists of several eukaryotic proteins of unknown function.
Probab=96.98 E-value=0.23 Score=45.39 Aligned_cols=136 Identities=14% Similarity=-0.010 Sum_probs=66.4
Q ss_pred HhhhhhHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhh--hhh---hccccccC
Q 018373 210 SLAELPGLILSAIIVDKIGRKLSMVLMFVSACIFLLPLVFHQSAVVTTVLLFGVRMCVTGTITV--ATI---YAPEIYPT 284 (357)
Q Consensus 210 ~~~~~~~~~~~~~l~d~~GRR~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~---~~~ElfPt 284 (357)
.....+...+.|.+.||+|||+..+...+.-++..+.....+...+...=+ .........++. .|. ....=||.
T Consensus 79 f~Ss~i~g~~~G~laD~~Grk~~cl~~cily~~scl~k~~~~~~~L~~GRv-lgGiaTSLLfS~FEsW~V~Eh~~~g~~~ 157 (354)
T PF05631_consen 79 FASSAIFGTFVGSLADRYGRKKACLLFCILYSLSCLTKHSSNYPVLLLGRV-LGGIATSLLFSAFESWMVHEHNKRGFPQ 157 (354)
T ss_pred HHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHhccccHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHcCCCh
Confidence 344455566778999999999998876665544443222222111111000 011111111111 121 23334666
Q ss_pred cchhhHHHHHH-HHHHHHHhHHHHHHHHHHhhc--chhhHHHHHHHHHHHHHHHHhhccccccCc
Q 018373 285 SARTTGFGVAS-SLGKVGGMVCPLVAVGLVTSC--HLRLAVILFEVVFVLAIASSLLFPFETMGR 346 (357)
Q Consensus 285 ~~R~~~~~~~~-~~~~l~~~~~p~~~~~l~~~~--~~~~~~~~~~~~~~~~~~~~~~~~pet~~~ 346 (357)
+-.+...+... ..+.+.++.+-.+...+.+.. ++..||..-..+..++.+++....+|..|.
T Consensus 158 ~~L~~tF~~~tf~~n~~vAI~aGv~a~~l~~~~~~g~vaPF~~a~~~l~~~~~~I~~~W~ENyg~ 222 (354)
T PF05631_consen 158 EWLSDTFSLATFFGNGVVAIGAGVVANVLADWFGFGPVAPFDAAIVLLAVAAVLILKTWPENYGD 222 (354)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHhHHHHHHHHHhCCCCcchHHHHHHHHHHHHHHHHhcccccCCC
Confidence 55444444333 222333444444444444433 335566665566667777777777887664
No 228
>TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors).
Probab=96.74 E-value=0.07 Score=53.53 Aligned_cols=102 Identities=14% Similarity=0.166 Sum_probs=61.1
Q ss_pred hhHHHHHHHHHHh-hchhHHHHHHHHHHHHHHHHHHhh---hh--hHHHHHHH---HHHHHHhhhhhhhhhhhccccccC
Q 018373 214 LPGLILSAIIVDK-IGRKLSMVLMFVSACIFLLPLVFH---QS--AVVTTVLL---FGVRMCVTGTITVATIYAPEIYPT 284 (357)
Q Consensus 214 ~~~~~~~~~l~d~-~GRR~~~~~~~~~~~i~~~~~~~~---~~--~~~~~~~~---~~~~~~~~~~~~~~~~~~~ElfPt 284 (357)
-+..++++++.|+ +||++.+..+.++..+....+... .. .......+ .+......+.-+-......|.|+.
T Consensus 37 yl~pilGg~iAD~~lG~~~tIl~~~ii~~lG~~llai~a~~~~~~~~~~~~~l~gLaLia~G~GgiKp~vsaf~gdqf~~ 116 (654)
T TIGR00926 37 YLTPLIGAIIADGWLGKFKTILYLSIVYVVGHALLSFGAIPSSGHPLHDLLDLLGLALIALGTGGIKPCVSAFGGDQFEE 116 (654)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhccCcccccchHHHHHHHHHHHHHhhccccccCchhhhHhhcCc
Confidence 4456678889997 799999887776654433332221 10 11111111 111111122223455677788875
Q ss_pred c---chhhHHHHHHHHHHHHHhHHHHHHHHHHhh
Q 018373 285 S---ARTTGFGVASSLGKVGGMVCPLVAVGLVTS 315 (357)
Q Consensus 285 ~---~R~~~~~~~~~~~~l~~~~~p~~~~~l~~~ 315 (357)
+ .|.....+.+..+.+|+++++.+.+++-+.
T Consensus 117 ~~~~~~~s~F~~fY~~iNiGSlis~~i~~~l~~~ 150 (654)
T TIGR00926 117 RQLSLRSRFFSFFYFAINAGSLISTIITPILRGD 150 (654)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3 477888999999999999999888877533
No 229
>KOG3762 consensus Predicted transporter [General function prediction only]
Probab=96.67 E-value=0.0075 Score=57.54 Aligned_cols=130 Identities=16% Similarity=0.151 Sum_probs=80.2
Q ss_pred HHHHhhhhhHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhhhhccccccCcc
Q 018373 207 FIASLAELPGLILSAIIVDKIGRKLSMVLMFVSACIFLLPLVFHQSAVVTTVLLFGVRMCVTGTITVATIYAPEIYPTSA 286 (357)
Q Consensus 207 ~i~~~~~~~~~~~~~~l~d~~GRR~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ElfPt~~ 286 (357)
+....++++..+++..+++|+|+-+.+..+..+...=.+++.+-++++...-+-..........|...-.|++-.-|++.
T Consensus 413 a~~~~gEI~~~ffs~klI~kiGHv~v~~lgLa~~~~Rf~~~S~L~n~W~vLPieilqgit~aliWaa~~sY~s~vaPp~l 492 (618)
T KOG3762|consen 413 ALCHAGEILFYFFSFKLIEKIGHVNVMYLGLACNVGRFLYYSYLQNPWMVLPIEILQGITHALIWAAIISYASHVAPPGL 492 (618)
T ss_pred hhhccchHHHHHHHHHHHHHhcccceeeehhhHHHHHHHHHHHhcCchheeeHHHHHHHHHHHHHHHHHHHHHhhCCCcc
Confidence 34456678888888999999999998877666554433333333444433222222223333445666778999999999
Q ss_pred hhhHHHHHHHHHH-HHHhHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHH
Q 018373 287 RTTGFGVASSLGK-VGGMVCPLVAVGLVTSCHLRLAVILFEVVFVLAIASS 336 (357)
Q Consensus 287 R~~~~~~~~~~~~-l~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 336 (357)
|++++++...... +|-..++++...+.+..+.--.|.+|++.|++..+..
T Consensus 493 ~at~Q~l~~g~f~GlG~g~GslIGG~~v~~fg~~ttf~~~giAcl~~l~~~ 543 (618)
T KOG3762|consen 493 RATAQGLLQGIFHGLGKGLGSLIGGFVVERFGARTTFRIFGIACLVTLALF 543 (618)
T ss_pred hHHHHHHHHHHhcccCcchhhhhhhhhheeehhHHHHHHHHHHHHHHHHHH
Confidence 9999999987753 4434444444444445554445666666655544433
No 230
>PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon. It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase.
Probab=96.44 E-value=0.78 Score=42.77 Aligned_cols=39 Identities=15% Similarity=0.305 Sum_probs=25.7
Q ss_pred HHHHhhhhhHHHHHHHHHH-hhchhHHHHHHHHHHHHHHH
Q 018373 207 FIASLAELPGLILSAIIVD-KIGRKLSMVLMFVSACIFLL 245 (357)
Q Consensus 207 ~i~~~~~~~~~~~~~~l~d-~~GRR~~~~~~~~~~~i~~~ 245 (357)
..-+.+.++|..+.+++.. |.+.++...++...+.....
T Consensus 251 a~~~~G~L~G~~~~g~~l~~~~~~~~~a~~G~~~~~~~f~ 290 (403)
T PF03209_consen 251 AFWGGGTLLGMLLAGFLLSRRLGKKRTAALGCLLGALAFA 290 (403)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHH
Confidence 4456777888888887777 57777766565555544433
No 231
>PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins. Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus).
Probab=96.29 E-value=0.046 Score=52.19 Aligned_cols=128 Identities=22% Similarity=0.218 Sum_probs=75.0
Q ss_pred HHHHHHHHhh-----chhHHHHHHHHHHHHHHHHHHh-hh---hhHHHHHHHHHHHHHhhhhhhhhhhhcccc---ccCc
Q 018373 218 ILSAIIVDKI-----GRKLSMVLMFVSACIFLLPLVF-HQ---SAVVTTVLLFGVRMCVTGTITVATIYAPEI---YPTS 285 (357)
Q Consensus 218 ~~~~~l~d~~-----GRR~~~~~~~~~~~i~~~~~~~-~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~El---fPt~ 285 (357)
.+.|.+.|.+ .||+.++++.+++.+....+.. .. +.....++.+...+.....-...-.+..|. -|.+
T Consensus 42 p~~g~lsD~~pi~G~rr~~Y~~i~~~~~~~~~~~~~~~~~~~~s~~~~~~~l~la~~g~a~~DV~aDa~vvE~~~~~p~~ 121 (433)
T PF03092_consen 42 PLYGLLSDSFPIFGYRRKPYMIIGWLLGAVSALVLALLPASESSAAIAVVLLFLASFGYAFADVAADALVVELARREPES 121 (433)
T ss_pred hhHHhhcccccccCCcchHHHHHHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHHHhhhHHHHHHhhcCCch
Confidence 4668899976 3555566666666544444332 21 111212222222222222222333444555 4555
Q ss_pred chhhHHHHHHHHHHHHHhHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHHhhccccccCc
Q 018373 286 ARTTGFGVASSLGKVGGMVCPLVAVGLVTSCHLRLAVILFEVVFVLAIASSLLFPFETMGR 346 (357)
Q Consensus 286 ~R~~~~~~~~~~~~l~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~pet~~~ 346 (357)
|+.-+++++.+-.+|++++..+.+++.+..+....+.+.+++..+..+..++..+|.+.+
T Consensus 122 -~g~lqS~~~~~~~~G~lv~~~l~G~l~~~~~~~~~f~i~~~~~~l~~~~~~~~~~e~~~~ 181 (433)
T PF03092_consen 122 -RGDLQSFVWGVRSVGSLVGSLLSGPLLDSFGPQGVFLISAALPLLMLIVALFLLEERKVR 181 (433)
T ss_pred -hHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCCeEEehHHHHHHHHHHHHHHHhhhhcccc
Confidence 888888888888888888888887777766655566777777777766777777774433
No 232
>PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) []. The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A.
Probab=96.28 E-value=0.11 Score=48.91 Aligned_cols=130 Identities=18% Similarity=0.187 Sum_probs=57.2
Q ss_pred HHhhhhhHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHH---h-h--hhhHHHHHHHHHHHHHhhhhhhhhhhhccccc
Q 018373 209 ASLAELPGLILSAIIVDKIGRKLSMVLMFVSACIFLLPLV---F-H--QSAVVTTVLLFGVRMCVTGTITVATIYAPEIY 282 (357)
Q Consensus 209 ~~~~~~~~~~~~~~l~d~~GRR~~~~~~~~~~~i~~~~~~---~-~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Elf 282 (357)
..+..++..++.|.+.||+|.|+-++.......++..++. + + +.+.+ ........+......+...+ .|.+
T Consensus 52 ~~~~~l~~qp~~G~i~Dklg~kK~Ll~~i~~l~~l~~pff~~v~~pll~~n~~-lg~iig~i~l~~~f~~~~~~--~Ea~ 128 (412)
T PF01306_consen 52 GSLFALLAQPVYGFISDKLGLKKHLLWFIAILLLLFGPFFIYVFGPLLQSNFW-LGAIIGGIYLGLVFNAGVPL--SEAY 128 (412)
T ss_dssp HHHHHHHTHHHHHHHHHHCTTCSHHHHHHHHHHHTCHHHHHHTHHHHHHTT-H-HHHHHTTTTTTTTTTTHHHH--HHHH
T ss_pred HHHHHHHHHHhHHHhcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHcccchH--HHHH
Confidence 3456677778899999999966655443332222221211 1 1 11111 11111111111111111221 1433
Q ss_pred cCc---chhhHHHHHHHHHHHHHhHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHHhhcccc
Q 018373 283 PTS---ARTTGFGVASSLGKVGGMVCPLVAVGLVTSCHLRLAVILFEVVFVLAIASSLLFPFE 342 (357)
Q Consensus 283 Pt~---~R~~~~~~~~~~~~l~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~pe 342 (357)
-.+ ....=-|=....|.++-.+++.+.+.+.+. ++...+++..+..++..++.++..|+
T Consensus 129 ~er~sr~~~feYG~~R~wGSig~ai~s~~~G~L~~i-~p~~~fwi~s~~~~il~lll~~~~~~ 190 (412)
T PF01306_consen 129 AERVSRRNGFEYGRARMWGSIGFAIASLLAGILFNI-NPNIIFWIASAAAIILLLLLLLLKPD 190 (412)
T ss_dssp HHHHHHHHSS-HHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHSS---
T ss_pred HHHHHHHhcCCcchHHHHhhHHHHHHHHHhheeeee-CccHHHHHHHHHHHHHHHHHHHcCCc
Confidence 332 112223334555666667777777777653 44445555444444444555555443
No 233
>COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism]
Probab=96.22 E-value=0.14 Score=48.71 Aligned_cols=131 Identities=15% Similarity=0.114 Sum_probs=74.3
Q ss_pred HhhhhhHHHHHHHHHHh----hchhHH-HHHHHHHHHHHHHHHHhhh------hhHHHHHHHHHHHHHhhhhhhhhhhhc
Q 018373 210 SLAELPGLILSAIIVDK----IGRKLS-MVLMFVSACIFLLPLVFHQ------SAVVTTVLLFGVRMCVTGTITVATIYA 278 (357)
Q Consensus 210 ~~~~~~~~~~~~~l~d~----~GRR~~-~~~~~~~~~i~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~ 278 (357)
=+...+.-++.|.++|| +|||+- ++++.+..++....+.... +.....+.+.....++........+..
T Consensus 58 RiiDAi~DP~~G~i~D~t~~r~GrfRP~lL~g~ip~~i~~~l~F~~p~~~~~~k~~ya~vtY~l~~l~YT~vniPy~al~ 137 (467)
T COG2211 58 RIIDAITDPIMGFIVDRTRSRWGRFRPWLLWGAIPFAIVAVLLFITPDFSMTGKLIYALVTYMLLGLGYTLVNIPYGALG 137 (467)
T ss_pred HHHHHHhcchheeeecccccccccccHHHHHHhHHHHHHHHHHHcCCCcccCcchHHHHHHHHHHHHHHHheeCchhhcc
Confidence 34445666788899996 576555 4555555555444433321 112222223333233333222345688
Q ss_pred cccccC-cchhhHHHHHHHHHHHHHhHHHHHHHHHHhhcchh-------hHHHHHHHHHHHHHHHHhhcc
Q 018373 279 PEIYPT-SARTTGFGVASSLGKVGGMVCPLVAVGLVTSCHLR-------LAVILFEVVFVLAIASSLLFP 340 (357)
Q Consensus 279 ~ElfPt-~~R~~~~~~~~~~~~l~~~~~p~~~~~l~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~ 340 (357)
+|+-+. +-|....++=...+.+++++...+.+++....+.. ....+++++..+..+++++-.
T Consensus 138 ~~iT~d~~ER~~l~s~R~~~~~~g~~l~~~~~~plv~~~g~~~~~~g~~~~~~~~~vi~~i~~l~~~~~v 207 (467)
T COG2211 138 PEITQDPQERASLTSWRMVFASLGGLLVAVLFPPLVKLFGGGDKALGYQGTALVLGVIGVILLLFCFFNV 207 (467)
T ss_pred hhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 888877 78999999998888888888877776666543321 223344444445555555543
No 234
>PF01770 Folate_carrier: Reduced folate carrier; InterPro: IPR002666 The reduced folate carrier (a transmembrane glycoprotein) transports reduced folate into mammalian cells via the carrier mediated mechanism (as opposed to the receptor mediated mechanism) it also transports cytotoxic folate analogues used in chemotherapy [], such as methotrexate (MTX). Mammalian cells have an absolute requirement for exogenous folates which are needed for growth, and biosynthesis of macromolecules [].; GO: 0005542 folic acid binding, 0008518 reduced folate carrier activity, 0006810 transport, 0016020 membrane
Probab=96.20 E-value=0.7 Score=43.40 Aligned_cols=62 Identities=16% Similarity=0.054 Sum_probs=41.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHh--cCcchHHHHHHhhHHHHHHHHHHhcCCCChHHHHHc
Q 018373 19 GRWMVALSAFWTAGTIFEASLAWVVM--TRLNWRWLLAFSSVPSFALLLFYGLAPESPRYLCAK 80 (357)
Q Consensus 19 g~~~~~~~~~~~~G~l~~~~i~~~~~--~~~~WR~~~~~~~~p~l~~~~~~~~lpESP~wL~~~ 80 (357)
-+..+......-+|-.++++++..+. ...+.+.+..+......+.++..+++|-.++=+.-|
T Consensus 128 q~vts~~raa~l~g~~~s~~lgQllvs~~~~sy~~L~~isl~~~~~a~~~~~fLP~~~~S~~f~ 191 (412)
T PF01770_consen 128 QKVTSYTRAATLVGRFISSLLGQLLVSFGGVSYFQLNYISLASVSLALLIALFLPMPKRSLFFH 191 (412)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHcCCCCccccee
Confidence 45556666666777777777665543 345788888888777777777778888876644333
No 235
>KOG2563 consensus Permease of the major facilitator superfamily [General function prediction only]
Probab=96.14 E-value=0.1 Score=48.93 Aligned_cols=113 Identities=17% Similarity=0.134 Sum_probs=67.1
Q ss_pred hhHHHHHHHHhhhhhHHHHHHHHHHhhchhHHHHHHHHHHHHHHHH-HHhhhh---hHHH-HHHHHHHHHH---hhhhhh
Q 018373 201 SLYVDVFIASLAELPGLILSAIIVDKIGRKLSMVLMFVSACIFLLP-LVFHQS---AVVT-TVLLFGVRMC---VTGTIT 272 (357)
Q Consensus 201 ~~~~~~~i~~~~~~~~~~~~~~l~d~~GRR~~~~~~~~~~~i~~~~-~~~~~~---~~~~-~~~~~~~~~~---~~~~~~ 272 (357)
..+.++ +..+..++-.+.+.|+.||+|-|...+.+....++-... +..... +... .+...+.... ......
T Consensus 81 ~~wlsm-Iym~v~vp~gf~~mw~ldk~GLR~a~llgt~ln~iGa~Ir~iss~p~v~~~f~~~l~~~Gq~iaa~Aq~Fim~ 159 (480)
T KOG2563|consen 81 ADWLSM-IYMVVSVPFGFAAMWILDKFGLRTALLLGTVLNGIGAWIRLISSLPFVPPLFRRPLTHTGQSIAAAAQPFILG 159 (480)
T ss_pred HHHHHH-HHHHHHHHHhhHHHHhhcccchHHHHHHHHHHHHHHHHHhhhccCccccccchhhhhHHhHHHHHHhhhHhhc
Confidence 334444 345667777888999999999999998877766553322 111111 1111 1111111111 011123
Q ss_pred hhhhhccccccCcchhhHHHHHHHHHHHHHhHHHHHHHHHHh
Q 018373 273 VATIYAPEIYPTSARTTGFGVASSLGKVGGMVCPLVAVGLVT 314 (357)
Q Consensus 273 ~~~~~~~ElfPt~~R~~~~~~~~~~~~l~~~~~p~~~~~l~~ 314 (357)
++.-+..--||.+.|++|+.++...+-+|..++..+-+.+..
T Consensus 160 lPskiA~~WF~~~qra~A~~~~v~~n~LGvavg~llppilV~ 201 (480)
T KOG2563|consen 160 LPSKIAAVWFPPDQRAIATVLGVMGNPLGVAVGFLLPPILVP 201 (480)
T ss_pred cccHHHHhhCCcchhhhhhhHHHhcchHHHHHHhhccceecC
Confidence 445566678999999999999998888877666555444443
No 236
>PF05978 UNC-93: Ion channel regulatory protein UNC-93; InterPro: IPR010291 The proteins in this family are represented by UNC-93 from Caenorhabditis elegans. UNC-93 colocalizes with SUP-10 and SUP-9 within muscle cells. Genetic studies suggest that these three proteins forms complex that coordinates muscle contraction. The function of UNC-93 is not known but is most likely an ion channel regulatory protein [].
Probab=95.89 E-value=0.41 Score=38.61 Aligned_cols=104 Identities=15% Similarity=0.118 Sum_probs=62.3
Q ss_pred HHHHHHHHhhhhhHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhhhhccccc
Q 018373 203 YVDVFIASLAELPGLILSAIIVDKIGRKLSMVLMFVSACIFLLPLVFHQSAVVTTVLLFGVRMCVTGTITVATIYAPEIY 282 (357)
Q Consensus 203 ~~~~~i~~~~~~~~~~~~~~l~d~~GRR~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Elf 282 (357)
+....+......+++++...+++++|.|+.++++.++-.+.......++...+.. .-....+.....|.....+..|.-
T Consensus 40 ~~slai~Y~~~~~s~l~~P~iv~~lg~K~sm~lg~~~y~~y~~~~~~~~~~~l~~-~s~l~G~~~a~lW~aqg~ylt~~s 118 (156)
T PF05978_consen 40 YYSLAILYGSFAISCLFAPSIVNKLGPKWSMILGSLGYAIYIASFFYPNSYTLYP-ASALLGFGAALLWTAQGTYLTSYS 118 (156)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhhHHHHHH-HHHHHhhhhHHhhHhhhHHHHHcC
Confidence 3444455666677888889999999999999988877666555444333221111 111112222223444555677777
Q ss_pred cCcchhhHHHHHHHHHHHHHhHHHH
Q 018373 283 PTSARTTGFGVASSLGKVGGMVCPL 307 (357)
Q Consensus 283 Pt~~R~~~~~~~~~~~~l~~~~~p~ 307 (357)
..+.|++-.++-.++...+.+++..
T Consensus 119 ~~~~~~~~~~ifw~i~~~s~i~G~~ 143 (156)
T PF05978_consen 119 TEETIGRNTGIFWAIFQSSLIFGNL 143 (156)
T ss_pred CHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 7788887777766665554444443
No 237
>TIGR00769 AAA ADP/ATP carrier protein family. These proteins are members of the ATP:ADP Antiporter (AAA) Family (TC 2.A.12), which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.
Probab=95.59 E-value=2.4 Score=40.91 Aligned_cols=41 Identities=7% Similarity=-0.085 Sum_probs=37.2
Q ss_pred hhhhhccccccCcchhhHHHHHHHHHHHHHhHHHHHHHHHH
Q 018373 273 VATIYAPEIYPTSARTTGFGVASSLGKVGGMVCPLVAVGLV 313 (357)
Q Consensus 273 ~~~~~~~ElfPt~~R~~~~~~~~~~~~l~~~~~p~~~~~l~ 313 (357)
+.|.+.+|++..+.-.+-.++....+.++..+++.+..++.
T Consensus 149 lFW~fandi~t~~qakRfy~l~~~ganlg~i~sg~~~~~~~ 189 (472)
T TIGR00769 149 LFWGFANQITTIDEAKRFYALFGLGANVALIFSGRTIKYFS 189 (472)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67999999999999999999999999999999998877655
No 238
>PRK09848 glucuronide transporter; Provisional
Probab=95.52 E-value=0.29 Score=46.78 Aligned_cols=32 Identities=9% Similarity=0.221 Sum_probs=22.9
Q ss_pred HHHHhhhhhHHHHHHHHHHhh----chhHHH-HHHHH
Q 018373 207 FIASLAELPGLILSAIIVDKI----GRKLSM-VLMFV 238 (357)
Q Consensus 207 ~i~~~~~~~~~~~~~~l~d~~----GRR~~~-~~~~~ 238 (357)
.+..+...+..++.|+++||. |||+.. ..+.+
T Consensus 51 ~~~~~~~~~~~~~~G~l~Dr~~~~~Gr~~~~~~~~~~ 87 (448)
T PRK09848 51 LLVRVFDAFADVFAGRVVDSVNTRWGKFRPFLLFGTA 87 (448)
T ss_pred HHHHHHHHHhhhhheeeeecCCCCCcCchHHHHHHHH
Confidence 345666778889999999996 777754 44444
No 239
>PF03825 Nuc_H_symport: Nucleoside H+ symporter
Probab=95.38 E-value=1.4 Score=41.57 Aligned_cols=44 Identities=25% Similarity=0.353 Sum_probs=29.6
Q ss_pred HHHHhhhhhHHHHHHHHHHhhc-hhHHHHHHHHHHHHHHHHHHhh
Q 018373 207 FIASLAELPGLILSAIIVDKIG-RKLSMVLMFVSACIFLLPLVFH 250 (357)
Q Consensus 207 ~i~~~~~~~~~~~~~~l~d~~G-RR~~~~~~~~~~~i~~~~~~~~ 250 (357)
.+..+..+++.++.+.++||.+ +|+.+.+..+++++.+......
T Consensus 44 a~~~~~~i~~~~~~g~~aDr~~~~~~~l~~~~l~~~~~~~~~~~~ 88 (400)
T PF03825_consen 44 AVGPLARIVSPPFWGAIADRFGSAKRILALLSLLSALALLLLAFS 88 (400)
T ss_pred HHHHHHHHHHHHHHHHHHhHhhhHHHHHHHHHHHHHHHHHHHHHh
Confidence 3456777888899999999986 5556656666655555444433
No 240
>TIGR00939 2a57 Equilibrative Nucleoside Transporter (ENT).
Probab=94.97 E-value=3.5 Score=39.43 Aligned_cols=36 Identities=14% Similarity=0.039 Sum_probs=25.4
Q ss_pred hhhhhhhccccccCcchhhHHHHHHHHHHHHHhHHH
Q 018373 271 ITVATIYAPEIYPTSARTTGFGVASSLGKVGGMVCP 306 (357)
Q Consensus 271 ~~~~~~~~~ElfPt~~R~~~~~~~~~~~~l~~~~~p 306 (357)
.+....+.++..+++.|-.+..+....--+|-.++.
T Consensus 390 ~s~~m~~~p~~v~~~e~e~aG~~~~~~l~~Gl~~Gs 425 (437)
T TIGR00939 390 GSLSMCLAPRQVDPHEREVAGALMVIFLLVGLALGA 425 (437)
T ss_pred HHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456788899999999998877776665554444443
No 241
>COG0477 ProP Permeases of the major facilitator superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / Inorganic ion transport and metabolism / General function prediction only]
Probab=94.43 E-value=1.4 Score=38.48 Aligned_cols=104 Identities=21% Similarity=0.280 Sum_probs=57.9
Q ss_pred HhhhhhHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHhhhh--hHHHHHHHHHHHHHhhhhhhhhhhhccccccC-cc
Q 018373 210 SLAELPGLILSAIIVDKIGRKLSMVLMFVSACIFLLPLVFHQS--AVVTTVLLFGVRMCVTGTITVATIYAPEIYPT-SA 286 (357)
Q Consensus 210 ~~~~~~~~~~~~~l~d~~GRR~~~~~~~~~~~i~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~ElfPt-~~ 286 (357)
.+....+.++.+.+.||.|||+.+..+................ ............+......+....+.+|.+|. +.
T Consensus 49 ~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 128 (338)
T COG0477 49 FLGYAIGSLLAGPLGDRYGRRKVLIIGLLLFLLGTLLLALAPNVGLALLLILRLLQGLGGGGLLPVASALLSEWFPEATE 128 (338)
T ss_pred HHHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCchhH
Confidence 4445555688999999999997776655431221111112111 11111111111222223445678889999998 67
Q ss_pred hhhHHHHHHH-HHHHHHhHHHHHHHHHH
Q 018373 287 RTTGFGVASS-LGKVGGMVCPLVAVGLV 313 (357)
Q Consensus 287 R~~~~~~~~~-~~~l~~~~~p~~~~~l~ 313 (357)
|+...+.... ...++...+|.+...+.
T Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (338)
T COG0477 129 RGLAVGLVTLGAGALGLALGPLLAGLLL 156 (338)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888887777 35556666664544333
No 242
>TIGR01272 gluP glucose/galactose transporter. Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity.
Probab=92.78 E-value=0.82 Score=41.47 Aligned_cols=75 Identities=21% Similarity=0.283 Sum_probs=52.7
Q ss_pred hhhhhhccccccCcchhhHHHHHHHHHHHHHhHHHHHHHHHHhhc----------------chhhHHHHHHHHHH-HHHH
Q 018373 272 TVATIYAPEIYPTSARTTGFGVASSLGKVGGMVCPLVAVGLVTSC----------------HLRLAVILFEVVFV-LAIA 334 (357)
Q Consensus 272 ~~~~~~~~ElfPt~~R~~~~~~~~~~~~l~~~~~p~~~~~l~~~~----------------~~~~~~~~~~~~~~-~~~~ 334 (357)
+....+.+.+.|.+.|++-.++..++..+|++++|.+...+.... +...+|++.+++.. +..+
T Consensus 29 ~~~n~~v~~~~~~~~~~~~l~~~~~~~~~G~~~gP~i~~~~i~~~~~~~~~~~~~~~~~~~~~~~~yl~ia~~~~~~~i~ 108 (310)
T TIGR01272 29 VAANPYVSILGPIETAASRLALTQAFNKLGTTVAPLFGGSLILSGAGDLSMQVATANAEAAKVHTPYLLLAGALAVLAII 108 (310)
T ss_pred hhHHHHHHHHCCcchHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCcchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 466788999999999999999999999999999999988666321 22345665544433 3334
Q ss_pred HHhhccccccCc
Q 018373 335 SSLLFPFETMGR 346 (357)
Q Consensus 335 ~~~~~~pet~~~ 346 (357)
+.+...||.+..
T Consensus 109 ~~~~~~p~~~~~ 120 (310)
T TIGR01272 109 FAFLPLPELQEA 120 (310)
T ss_pred HHHccCCCCCcc
Confidence 444456776543
No 243
>KOG2325 consensus Predicted transporter/transmembrane protein [General function prediction only]
Probab=91.91 E-value=3.3 Score=39.86 Aligned_cols=136 Identities=19% Similarity=0.218 Sum_probs=70.2
Q ss_pred HHHHhhhhhHHHHHHHHHHhhc--hhHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHh---hhhhhhhhhhcccc
Q 018373 207 FIASLAELPGLILSAIIVDKIG--RKLSMVLMFVSACIFLLPLVFHQSAVVTTVLLFGVRMCV---TGTITVATIYAPEI 281 (357)
Q Consensus 207 ~i~~~~~~~~~~~~~~l~d~~G--RR~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~El 281 (357)
....++..+++++.++-..|.| ||++.....+.....+++......+.-...+...+.++. .+..+..-.|.+.-
T Consensus 78 aa~slg~~i~~liF~~Ws~k~~~~k~Pli~s~ii~~~g~llY~~l~~~~~~~~y~mL~~R~l~Gvg~~n~a~lR~Y~a~~ 157 (488)
T KOG2325|consen 78 AASSLGHAIFSLIFGIWSNKTGSVKKPLIVSFLIAIIGNLLYLALAYVPNGVKYLMLVARILTGVGVGNFAVLRAYIADA 157 (488)
T ss_pred HHHHHHHHhcchhhcccccccCCcccCHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHcCcCcccHHHHHHHHHhc
Confidence 3457788888999999999988 566655433332223333222111110111122222221 22334556677776
Q ss_pred ccCcchhhHHHHHHHHHHHHHhHHHHHHH---HHHhhc---------c-hhhHHHHHHHHHHHHHHHHhhcccc
Q 018373 282 YPTSARTTGFGVASSLGKVGGMVCPLVAV---GLVTSC---------H-LRLAVILFEVVFVLAIASSLLFPFE 342 (357)
Q Consensus 282 fPt~~R~~~~~~~~~~~~l~~~~~p~~~~---~l~~~~---------~-~~~~~~~~~~~~~~~~~~~~~~~pe 342 (357)
--.+.|.++++...+.--++.+++|-+.. .+.+.. + ...+-++.+.+.++..++..++..|
T Consensus 158 s~~~dR~rA~a~~~~~~vlg~ilGp~~q~~f~~Lg~~G~~i~~~~~~n~YTap~w~m~i~~i~~~v~i~~~f~E 231 (488)
T KOG2325|consen 158 STVEDRPRAFAATSGGFVLGIILGPTIQLAFTPLGEKGFMILPGLIFNMYTAPAWLMAILWIIYIVIILFFFKE 231 (488)
T ss_pred cCccchHHHHHHhhhHHHHHHHHhHHHHHHHhhhcCCceEEcCcceEEecchHHHHHHHHHHHHHHHHHhheee
Confidence 66667777777666543344444443322 222110 0 1235566677777777777776655
No 244
>PF05631 DUF791: Protein of unknown function (DUF791); InterPro: IPR008509 This family consists of several eukaryotic proteins of unknown function.
Probab=90.43 E-value=6.9 Score=36.01 Aligned_cols=14 Identities=36% Similarity=0.684 Sum_probs=12.0
Q ss_pred cchhhhhhcccccc
Q 018373 5 AYSWGIISDNYGRR 18 (357)
Q Consensus 5 a~~~g~~~d~~grr 18 (357)
+.+.|.++||+|||
T Consensus 86 g~~~G~laD~~Grk 99 (354)
T PF05631_consen 86 GTFVGSLADRYGRK 99 (354)
T ss_pred HHHHHHHHHhcCch
Confidence 45678999999999
No 245
>KOG2325 consensus Predicted transporter/transmembrane protein [General function prediction only]
Probab=90.07 E-value=4.6 Score=38.92 Aligned_cols=53 Identities=21% Similarity=0.217 Sum_probs=40.0
Q ss_pred hhhhhccccccCcchhhHHHHHHHHHHHHHhHHHHHHHHHHhhcchhhHHHHHH
Q 018373 273 VATIYAPEIYPTSARTTGFGVASSLGKVGGMVCPLVAVGLVTSCHLRLAVILFE 326 (357)
Q Consensus 273 ~~~~~~~ElfPt~~R~~~~~~~~~~~~l~~~~~p~~~~~l~~~~~~~~~~~~~~ 326 (357)
...+.-+|+.-++.+++++++....+-++-+++|.+........+.. +.+++.
T Consensus 408 ~~~tlySkiLgp~~q~~~qg~~~~~~s~~~~~~~~~~t~~~~~~g~~-~v~~~~ 460 (488)
T KOG2325|consen 408 ALDTLYSKILGPRDQGTMQGVFSISGSIARVVGPIFSTAIFTLSGPR-PVWIIL 460 (488)
T ss_pred hHHHHHHHHhCCccccceeEEEEeccchhhhhhHHHHhhhHHhcCcc-HHHHHH
Confidence 35677899999999999999999888888888888777665554433 344443
No 246
>PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon. It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase.
Probab=90.01 E-value=4.7 Score=37.75 Aligned_cols=49 Identities=16% Similarity=0.097 Sum_probs=39.8
Q ss_pred hhhhhhhccccccCcchhhHHHHHHHHHHHHHhHHHHHHHHHHhhcchh
Q 018373 271 ITVATIYAPEIYPTSARTTGFGVASSLGKVGGMVCPLVAVGLVTSCHLR 319 (357)
Q Consensus 271 ~~~~~~~~~ElfPt~~R~~~~~~~~~~~~l~~~~~p~~~~~l~~~~~~~ 319 (357)
.+...+..+|+-|.+.|+.+.++.+.+--++.+++..+...+++..+..
T Consensus 107 ~T~~lALl~D~~~e~~R~~~v~ivw~Mli~G~iv~ai~~g~lL~~~s~~ 155 (403)
T PF03209_consen 107 GTSFLALLADLAPEERRPRVVAIVWVMLIVGIIVSAIVFGRLLDPFSPE 155 (403)
T ss_pred HHHHHHHHHhcCCHhhhhhhHHHHHHHHHHHHHHHHHHHHHHccccCHH
Confidence 3456778999999999999999999998888778887877777765443
No 247
>PF01733 Nucleoside_tran: Nucleoside transporter; InterPro: IPR002259 Delayed-early response (DER) gene products include growth progression factors and several unknown products of novel cDNAs. Murine and human cDNAs from one novel DER gene (DER12) have been characterised to identify its product and to examine its role in the growth response []. Both sequences encode a hydrophobic 36kDa protein that is predicted to contain 8 transmembrane (TM) domains. The protein has been localised to the nucleolus, where its concentration increases following mitogen stimulation []. Although the function of the protein is unknown, its identification as a nucleolar gene transcriptionally activated by growth factors implicates it as participating in the proliferative response []. Sequence analysis reveals the protein to share a high degree of similarity with the C-terminal portion of equilibrative nucleoside transporters. These proteins are integral membrane proteins which enable the movement of hydrophilic nucleosides and nucleoside analogs down their concentration gradients across cell membranes. ENT family members have been identified in humans, mice, fish, tunicates, slime molds, and bacteria []. ; GO: 0005337 nucleoside transmembrane transporter activity, 0006810 transport, 0016020 membrane; PDB: 1HXI_A.
Probab=89.84 E-value=0.11 Score=47.19 Aligned_cols=58 Identities=12% Similarity=0.124 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH---hcCc--chHHHHHHhhHHHHHHHHHHhcCCCChHHHH
Q 018373 21 WMVALSAFWTAGTIFEASLAWVV---MTRL--NWRWLLAFSSVPSFALLLFYGLAPESPRYLC 78 (357)
Q Consensus 21 ~~~~~~~~~~~G~l~~~~i~~~~---~~~~--~WR~~~~~~~~p~l~~~~~~~~lpESP~wL~ 78 (357)
....+..+..++.++++++.... .+.. +=...|.++.+..+++++....++-+|.+..
T Consensus 29 y~~a~~~Gq~~aGv~~s~l~ii~~~~~~~~~~~a~~yF~~a~~i~i~~~~~~~~l~~~~~~~~ 91 (309)
T PF01733_consen 29 YTQAVMIGQGLAGVIVSLLRIITKASGSDVKTSAFIYFIIAVLIVILCIILYFILPRSPFYRY 91 (309)
T ss_dssp ---------------------------------------------------------------
T ss_pred HHHHHHhhccHHHHHHHHHHHHHHHhhhccchhhhhHHHHHHHHHHHHHHHHHHhccChHHHH
Confidence 45555666666666665554321 1222 3334567777777777777778888876543
No 248
>KOG3626 consensus Organic anion transporter [Secondary metabolites biosynthesis, transport and catabolism]
Probab=89.31 E-value=12 Score=37.99 Aligned_cols=43 Identities=12% Similarity=0.245 Sum_probs=34.6
Q ss_pred hhhhhccccccCcchhhHHHHHHHHHHH-HHhHHHHHHHHHHhh
Q 018373 273 VATIYAPEIYPTSARTTGFGVASSLGKV-GGMVCPLVAVGLVTS 315 (357)
Q Consensus 273 ~~~~~~~ElfPt~~R~~~~~~~~~~~~l-~~~~~p~~~~~l~~~ 315 (357)
..++++--..|.+.|+.|+|+-..+-|+ +.+-+|.+++++.+.
T Consensus 606 p~~~i~LR~V~~e~ks~AlG~~~~~irllg~IPsPIifG~~ID~ 649 (735)
T KOG3626|consen 606 PGMLIVLRCVPPEEKSFALGFQWMLIRLLGFIPSPIIFGAVIDT 649 (735)
T ss_pred cceEEEEEccCchhchhhhHHHHHHHHHHhcCCchHhhhhhHhh
Confidence 3456677789999999999999888885 567778888887753
No 249
>PF12832 MFS_1_like: MFS_1 like family
Probab=88.79 E-value=6.2 Score=27.48 Aligned_cols=33 Identities=21% Similarity=0.265 Sum_probs=26.3
Q ss_pred HHHHHhhhhhHHHHHHHHHHhhchhHHHHHHHH
Q 018373 206 VFIASLAELPGLILSAIIVDKIGRKLSMVLMFV 238 (357)
Q Consensus 206 ~~i~~~~~~~~~~~~~~l~d~~GRR~~~~~~~~ 238 (357)
..+.-+.++++..+.+.++||.||++..+....
T Consensus 41 ~~i~~~~~~~~~pl~g~laDk~~~~~~~l~~~~ 73 (77)
T PF12832_consen 41 SAIRPLIRFLAPPLWGFLADKFGKRKVILLGSL 73 (77)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCccHHHHHHHH
Confidence 345567788899999999999999998775543
No 250
>PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age. The disease is characterised by progressive loss of vision, seizures and psychomotor disturbances. Biochemically, the disease is characterised by lysosomal accumulation of hydrophobic material, mainly ATP synthase subunit C, largely in the brain but also in other tissues. The disease is fatal within a decade []. Mutations in the CLN3 gene are believed to cause Batten's disease []. The CLN3 gene, with a predicted 438-residue product, maps to chromosome p16p12.1. The gene contains at least 15 exons spanning 15kb and is highly conserved in mammals []. A 1.02kb deletion in the CLN3 gene, occurring in either one or both alleles, is found in 85% of Batten disease chromosomes causing a frameshift generating a predicted translated product of 181 amino acid residues [, ]. 22 other mutations, including deletions, insertions and point mutations, have been reported. It has been suggested that such mutations result in severely truncated CLN3 proteins, or affect its structure/conformation [, ]. CLN3 proteins, which are believed to associate in complexes, are heavily glycosylated lysosomal membrane proteins [], containing complex Asn-linked oligosaccharides []. Extensive glycosylation is important for the stability of these lysosomal proteins in the highly hydrolytic lysosomal lumen. Lysosomal sequestration of active lysosomal enzymes, transport of degraded molecules from the lysosomes, and fusion and fission between lysosomes and other organelles. The CLN3 protein is a 43kDa, highly hydrophobic, multi-transmembrane (TM), phosphorylated protein []. Hydrophobicity analysis predicts 6-9 TM segments, suggesting that CLN3 is a TM protein that may function as a chaperone or signal transducer. The majority of putative phosphorylation sites are found in the N-terminal domain, encompassing 150 residues []. Phosphorylation is believed to be important for membrane compartment interaction, in the formation of functional complexes, and in regulation and interactions with other proteins []. CLN3 contains several motifs that may undergo lipid post-translational modifications (PTMs). PTMs contribute to targeting and anchoring of modified proteins to distinct biological membranes []. There are three general classes of lipid modification: N-terminal myristoylation, C-terminal prenylation, and palmitoylation of cysteine residues. Such modifications are believed to be a common form of PTM occurring in 0.5% of all cellular proteins, including brain tissue []. The C terminus of the CLN3 contains various lipid modification sites: C435, target for prenylation; G419, target for myristoylation; and C414, target for palmitoylation []. Prenylation results in protein hydrophobicity, influences interaction with upstream regulatory proteins and downstream effectors, facilitates protein-protein interaction (multisubunit assembly) and promotes anchoring to membrane lipids. The prenylation motif, Cys-A-A-X, is highly conserved within CLN3 protein sequences of different species []. Species with known CLN3 protein homologues include: Homo sapiens, Canis familiaris, Mus musculus, Saccharomyces cerevisiae and Drosophila melanogaster.; GO: 0016020 membrane
Probab=88.61 E-value=22 Score=33.54 Aligned_cols=37 Identities=19% Similarity=0.266 Sum_probs=25.9
Q ss_pred hhhhccccccCcchhhHHHHHHHHHHHHHhHHHHHHH
Q 018373 274 ATIYAPEIYPTSARTTGFGVASSLGKVGGMVCPLVAV 310 (357)
Q Consensus 274 ~~~~~~ElfPt~~R~~~~~~~~~~~~l~~~~~p~~~~ 310 (357)
.+..+.|-.|.+.|-.++|.+...-.+|..++..+..
T Consensus 356 tF~~I~~~~~~~~REFslg~vsvsds~GI~lAgll~l 392 (402)
T PF02487_consen 356 TFYRISEEVPPEDREFSLGAVSVSDSLGILLAGLLGL 392 (402)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 3444566678999999999887776666666655443
No 251
>COG2270 Permeases of the major facilitator superfamily [General function prediction only]
Probab=88.32 E-value=8 Score=36.44 Aligned_cols=98 Identities=14% Similarity=0.065 Sum_probs=56.7
Q ss_pred HHhhhhhHHHHHHHHHHhhchhHHHHHH-HHHHHHHHHHHHhhhh--hHHHHH-HHHHHHHHhhhhhhhhhhhccccccC
Q 018373 209 ASLAELPGLILSAIIVDKIGRKLSMVLM-FVSACIFLLPLVFHQS--AVVTTV-LLFGVRMCVTGTITVATIYAPEIYPT 284 (357)
Q Consensus 209 ~~~~~~~~~~~~~~l~d~~GRR~~~~~~-~~~~~i~~~~~~~~~~--~~~~~~-~~~~~~~~~~~~~~~~~~~~~ElfPt 284 (357)
.++...+-.++-|-++|+-|+|+-.+.. ..+..++...+.+..+ ..+..+ ++.....+..+.......+.+.+.+.
T Consensus 67 a~llia~LapiLG~iaD~~g~Rk~~~~~f~~i~i~~~~~L~~i~~~s~~~~~l~~~il~~i~~~~s~Vfyds~L~~~~~k 146 (438)
T COG2270 67 AGLLIALLAPILGTIADYPGPRKKFFGFFTAIGIISTFLLWFIPPGSYLLLLLLFLILASIGFEFSNVFYDSMLPRLTTK 146 (438)
T ss_pred HHHHHHHHHHHhhhhhccCCCcchHHHHHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHhcchhheehhhHhhhhcCc
Confidence 3344444455668899999977765543 3444444444444322 322222 22222222222333456788888888
Q ss_pred cchhhHHHHHHHHHHHHHhHHH
Q 018373 285 SARTTGFGVASSLGKVGGMVCP 306 (357)
Q Consensus 285 ~~R~~~~~~~~~~~~l~~~~~p 306 (357)
+.-++..++.+..+.+++.+.-
T Consensus 147 ~~~~riS~lg~~~gylgs~i~l 168 (438)
T COG2270 147 DNMGRISGLGWALGYLGSVILL 168 (438)
T ss_pred cccCcccccccccccccchHHH
Confidence 8888889999999988876653
No 252
>COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism]
Probab=85.62 E-value=30 Score=32.08 Aligned_cols=123 Identities=14% Similarity=0.050 Sum_probs=65.2
Q ss_pred HhhhhhHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhhhhccccccCcchhh
Q 018373 210 SLAELPGLILSAIIVDKIGRKLSMVLMFVSACIFLLPLVFHQSAVVTTVLLFGVRMCVTGTITVATIYAPEIYPTSARTT 289 (357)
Q Consensus 210 ~~~~~~~~~~~~~l~d~~GRR~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ElfPt~~R~~ 289 (357)
.++--...++...+..|+|-++.+..+.+..++-...=.......+..-. ......+.-...+.+..+-|=||.++-.
T Consensus 57 ll~fg~~ap~a~~Lar~~g~er~l~~~Llli~~G~~iR~~~~~~~L~~gt-~l~G~gIav~nVLLPslIK~~Fpk~~~~- 134 (395)
T COG2807 57 LLAFGLFAPAAPRLARRFGEERSLFLALLLIAAGILIRSLGGLPLLFLGT-LLAGAGIAVINVLLPSLIKRDFPKRVGL- 134 (395)
T ss_pred HHHHHHHHhhhHHHHHHHhhHHHHHHHHHHHHHHHHHHhcccHHHHHHHH-HHHHhhHHHHHHhhhHHHHhhcccchhh-
Confidence 34444556777888889998888776655433222110011111111000 1111111223346677888999987644
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHhhc-chhhHHHHHHHHHHHHHH
Q 018373 290 GFGVASSLGKVGGMVCPLVAVGLVTSC-HLRLAVILFEVVFVLAIA 334 (357)
Q Consensus 290 ~~~~~~~~~~l~~~~~p~~~~~l~~~~-~~~~~~~~~~~~~~~~~~ 334 (357)
.+|+-...-.+++.+++.+..++.++. ++.+...+.+..++++.+
T Consensus 135 mtglYs~sl~~~aaLaa~lavpla~~~~gW~~aL~~WAl~allAl~ 180 (395)
T COG2807 135 MTGLYSTSLGAGAALAAALAVPLAQHSGGWRGALGFWALLALLALL 180 (395)
T ss_pred HHhHHHHHHHHHHHHHhhhhhHHHHhhccHHHHHHHHHHHHHHHHH
Confidence 344433334455666666666666654 455666666666666533
No 253
>TIGR00769 AAA ADP/ATP carrier protein family. These proteins are members of the ATP:ADP Antiporter (AAA) Family (TC 2.A.12), which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.
Probab=82.80 E-value=48 Score=32.10 Aligned_cols=39 Identities=13% Similarity=0.118 Sum_probs=31.8
Q ss_pred ccchhhhhhcccccc--hhHHHHHHHHHHHHHHHHHHHHHH
Q 018373 4 GAYSWGIISDNYGRR--GRWMVALSAFWTAGTIFEASLAWV 42 (357)
Q Consensus 4 ga~~~g~~~d~~grr--g~~~~~~~~~~~~G~l~~~~i~~~ 42 (357)
.-++|+..+|....+ .+...++..+-++|.++++.+...
T Consensus 147 S~lFW~fandi~t~~qakRfy~l~~~ganlg~i~sg~~~~~ 187 (472)
T TIGR00769 147 SLLFWGFANQITTIDEAKRFYALFGLGANVALIFSGRTIKY 187 (472)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 347899999998776 778899999999999998766544
No 254
>COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism]
Probab=81.25 E-value=55 Score=31.71 Aligned_cols=56 Identities=11% Similarity=0.187 Sum_probs=43.1
Q ss_pred hcccccchhHHHHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHhhHHHHHHHHHH
Q 018373 12 SDNYGRRGRWMVALSAFWTAGTIFEASLAWVVMTRLNWRWLLAFSSVPSFALLLFY 67 (357)
Q Consensus 12 ~d~~grrg~~~~~~~~~~~~G~l~~~~i~~~~~~~~~WR~~~~~~~~p~l~~~~~~ 67 (357)
.....||....++...+.++|.+++..+...+....+|..-|.++++-..+.++..
T Consensus 147 ~~~DprrD~gFt~fY~~iNiGsl~~p~i~~~~~~~~g~~~gF~~aavGm~~gl~~f 202 (498)
T COG3104 147 PKDDPRRDGGFTLFYMGINIGSLIAPIITGLLAINYGWHVGFGLAAVGMIIGLVIF 202 (498)
T ss_pred CCCCcccCCCccEEEEEeehHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHH
Confidence 33445777777888888999999999888777778899999999987665554443
No 255
>PF03219 TLC: TLC ATP/ADP transporter; InterPro: IPR004667 These proteins are members of the ATP:ADP Antiporter (AAA) family, which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.; GO: 0005471 ATP:ADP antiporter activity, 0005524 ATP binding, 0006810 transport, 0016021 integral to membrane
Probab=81.25 E-value=56 Score=31.83 Aligned_cols=42 Identities=10% Similarity=0.011 Sum_probs=36.3
Q ss_pred hhhhhccccccCcchhhHHHHHHHHHHHHHhHHHHHHHHHHh
Q 018373 273 VATIYAPEIYPTSARTTGFGVASSLGKVGGMVCPLVAVGLVT 314 (357)
Q Consensus 273 ~~~~~~~ElfPt~~R~~~~~~~~~~~~l~~~~~p~~~~~l~~ 314 (357)
+.|.+++|+++.+.-.+-.++....+.++.+++..+..++.+
T Consensus 164 LFW~fAN~itt~~eAKRfYpl~g~ganigli~sG~~~~~~~~ 205 (491)
T PF03219_consen 164 LFWGFANEITTVEEAKRFYPLFGLGANIGLIFSGQLTSYFSS 205 (491)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 469999999999999999999999999988888777766555
No 256
>PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs). Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P.
Probab=78.07 E-value=0.69 Score=45.46 Aligned_cols=42 Identities=19% Similarity=0.320 Sum_probs=0.0
Q ss_pred hhhhccccccCcchhhHHHHHHHHHHH-HHhHHHHHHHHHHhh
Q 018373 274 ATIYAPEIYPTSARTTGFGVASSLGKV-GGMVCPLVAVGLVTS 315 (357)
Q Consensus 274 ~~~~~~ElfPt~~R~~~~~~~~~~~~l-~~~~~p~~~~~l~~~ 315 (357)
...++--..|.+.|+.|.|+-..+.|+ +.+-+|.+++.+.+.
T Consensus 472 ~~~i~LR~V~~~~rs~AlGv~~~~~rllg~IPgPIifG~iiD~ 514 (539)
T PF03137_consen 472 STLITLRCVPPEQRSFALGVQWLIIRLLGFIPGPIIFGAIIDS 514 (539)
T ss_dssp -------------------------------------------
T ss_pred hheeeeccCChhhcchhhhHHHHHHHhhcCcchHHHHhHHHhh
Confidence 445666788999999999999999885 557788888877664
No 257
>PF01770 Folate_carrier: Reduced folate carrier; InterPro: IPR002666 The reduced folate carrier (a transmembrane glycoprotein) transports reduced folate into mammalian cells via the carrier mediated mechanism (as opposed to the receptor mediated mechanism) it also transports cytotoxic folate analogues used in chemotherapy [], such as methotrexate (MTX). Mammalian cells have an absolute requirement for exogenous folates which are needed for growth, and biosynthesis of macromolecules [].; GO: 0005542 folic acid binding, 0008518 reduced folate carrier activity, 0006810 transport, 0016020 membrane
Probab=78.06 E-value=64 Score=30.59 Aligned_cols=123 Identities=17% Similarity=0.179 Sum_probs=62.0
Q ss_pred HHHHHHHHhhchhHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhhhhccccccCcchhhHHHHHHHH
Q 018373 218 ILSAIIVDKIGRKLSMVLMFVSACIFLLPLVFHQSAVVTTVLLFGVRMCVTGTITVATIYAPEIYPTSARTTGFGVASSL 297 (357)
Q Consensus 218 ~~~~~l~d~~GRR~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ElfPt~~R~~~~~~~~~~ 297 (357)
+....+.|.+|-|+.++...+...+....+.+.++....-+.-+..+.. .+.-...+.|+=-.-|++.=-++.+.+.+.
T Consensus 59 ~~vflltd~l~Ykpviil~~~~~i~t~~lll~~~sv~~mq~~q~~yg~~-~a~evay~sYiys~v~~~~yq~vts~~raa 137 (412)
T PF01770_consen 59 LPVFLLTDYLRYKPVIILQALSYIITWLLLLFGTSVLAMQLMQFFYGLA-TAAEVAYYSYIYSVVDKEHYQKVTSYTRAA 137 (412)
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHCcHHHHHHHHHHHHHH-HHHHHHHHHHheeecCHHHHHHHHHHHHHH
Confidence 4456899999999999988777666555444443221111111111111 111123334443444666556667777777
Q ss_pred HHHHHhHHHHHHHHHHhhcchhhHHHHH--HHHHHHHHHHHhhccc
Q 018373 298 GKVGGMVCPLVAVGLVTSCHLRLAVILF--EVVFVLAIASSLLFPF 341 (357)
Q Consensus 298 ~~l~~~~~p~~~~~l~~~~~~~~~~~~~--~~~~~~~~~~~~~~~p 341 (357)
.-+|.+++..+...+.+..+.....+.+ .+...++.++.+++++
T Consensus 138 ~l~g~~~s~~lgQllvs~~~~sy~~L~~isl~~~~~a~~~~~fLP~ 183 (412)
T PF01770_consen 138 TLVGRFISSLLGQLLVSFGGVSYFQLNYISLASVSLALLIALFLPM 183 (412)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 6666666665555444433333222322 2223444455555443
No 258
>KOG3098 consensus Uncharacterized conserved protein [Function unknown]
Probab=77.77 E-value=34 Score=32.95 Aligned_cols=102 Identities=14% Similarity=0.064 Sum_probs=66.2
Q ss_pred HHHHHHHHhhhhhHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhhhhccccc
Q 018373 203 YVDVFIASLAELPGLILSAIIVDKIGRKLSMVLMFVSACIFLLPLVFHQSAVVTTVLLFGVRMCVTGTITVATIYAPEIY 282 (357)
Q Consensus 203 ~~~~~i~~~~~~~~~~~~~~l~d~~GRR~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Elf 282 (357)
|....+....-.+.+++++.++|++|.|+.+.++..+-..+...+.+.+.... ...-...++.....|.....|.+|-.
T Consensus 53 y~~~aiiY~~ftv~~l~~psiv~~i~~K~~lv~ga~~y~~f~~gfl~~N~y~~-yfssallG~Gaallw~GqG~ylt~~s 131 (461)
T KOG3098|consen 53 YYGQAIIYAFFTVSCLFAPSIVNFLGPKWALVIGATCYAAFPLGFLFPNSYYL-YFSSALLGFGAALLWTGQGGYLTSNS 131 (461)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHhhHHHHHHHHhHHHHHHHHHHHhcchHHH-HHHHHHhhhhHHheecccceehhhcC
Confidence 55455667777888999999999999999999888776666655444432211 11011111111122344556889999
Q ss_pred cCcchhhHHHHHHHHHHHHHhHH
Q 018373 283 PTSARTTGFGVASSLGKVGGMVC 305 (357)
Q Consensus 283 Pt~~R~~~~~~~~~~~~l~~~~~ 305 (357)
+.+-+.+-.++..+++..+.+++
T Consensus 132 t~~tie~Nisi~Wai~~~~li~G 154 (461)
T KOG3098|consen 132 TRETIERNISIFWAIGQSSLIIG 154 (461)
T ss_pred ChhhHHHHHHHHHHHHHHHHHhh
Confidence 98888888888888776554444
No 259
>PF06813 Nodulin-like: Nodulin-like; InterPro: IPR010658 This entry represents a conserved region within plant nodulin-like proteins and a number of uncharacterised proteins.
Probab=77.70 E-value=6.1 Score=34.59 Aligned_cols=56 Identities=14% Similarity=0.166 Sum_probs=33.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHhhHHHHHHHHHHhcCCCCh
Q 018373 19 GRWMVALSAFWTAGTIFEASLAWVVMTRLNWRWLLAFSSVPSFALLLFYGLAPESP 74 (357)
Q Consensus 19 g~~~~~~~~~~~~G~l~~~~i~~~~~~~~~WR~~~~~~~~p~l~~~~~~~~lpESP 74 (357)
|...++.-.+..++..+-+.+...+.+...-+.++.+...|.++++...+++.+-|
T Consensus 130 G~vvgilk~~~GLSaai~t~i~~~~f~~~~~~fll~la~~~~~v~l~~~~~vr~~~ 185 (250)
T PF06813_consen 130 GTVVGILKGFFGLSAAIFTQIYSAFFGDDPSSFLLFLAVLPAVVCLVAMFFVRPVP 185 (250)
T ss_pred CceehhhhHHHHhHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHhhheeccC
Confidence 55555555555555544443333344455677888888888888776665554433
No 260
>PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1. It is thought to be involved in iron export from duodenal epithelial cells and also in transfer of iron between maternal and fetal circulation. This family of proteins is known to be localised in the basolateral membrane of polarized epithelial cells [].; GO: 0005381 iron ion transmembrane transporter activity, 0034755 iron ion transmembrane transport, 0016021 integral to membrane
Probab=73.08 E-value=89 Score=29.88 Aligned_cols=57 Identities=12% Similarity=0.064 Sum_probs=41.0
Q ss_pred cCcchhhHHHHHHHHHHHHHhHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHHhhc
Q 018373 283 PTSARTTGFGVASSLGKVGGMVCPLVAVGLVTSCHLRLAVILFEVVFVLAIASSLLF 339 (357)
Q Consensus 283 Pt~~R~~~~~~~~~~~~l~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 339 (357)
+...++..++...-+--+..+++|.+...+.+..+......+.+++++++...-+++
T Consensus 143 ~~~~La~~NA~mRRIDL~ckllaPl~vG~l~t~~s~~~~~~~i~~~N~~S~~vEy~~ 199 (432)
T PF06963_consen 143 DPGALARMNATMRRIDLFCKLLAPLFVGLLMTFASPVIAAIFIAGWNLASVFVEYFL 199 (432)
T ss_pred ChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCHHHHHHHHHHHHHHHHHHHHHH
Confidence 445556666666666667899999999988776666666777788888777665543
No 261
>PF13000 Acatn: Acetyl-coenzyme A transporter 1; InterPro: IPR024371 Acetyl-coenzyme A transporter 1 (also known as acatn) is a multipass transmembrane protein that appears to promote 9-O-acetylation in gangliosides [, ]. This entry represents acatn and its homologues.; GO: 0008521 acetyl-CoA transporter activity, 0016021 integral to membrane
Probab=72.71 E-value=33 Score=33.27 Aligned_cols=31 Identities=26% Similarity=0.469 Sum_probs=19.7
Q ss_pred HHHHHHHHhhchhHHHHH-HHHHHHHHHHHHH
Q 018373 218 ILSAIIVDKIGRKLSMVL-MFVSACIFLLPLV 248 (357)
Q Consensus 218 ~~~~~l~d~~GRR~~~~~-~~~~~~i~~~~~~ 248 (357)
++=.....|+|||+..++ ...++++.++.+.
T Consensus 58 iVDs~y~~~~GRRKSWiiP~Q~l~g~~m~~l~ 89 (544)
T PF13000_consen 58 IVDSVYSKRIGRRKSWIIPIQYLSGILMLYLS 89 (544)
T ss_pred hhhhhcccccCCcchhhhHHHHHHHHHHHHHH
Confidence 333455668999999876 4555555555443
No 262
>PF03219 TLC: TLC ATP/ADP transporter; InterPro: IPR004667 These proteins are members of the ATP:ADP Antiporter (AAA) family, which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.; GO: 0005471 ATP:ADP antiporter activity, 0005524 ATP binding, 0006810 transport, 0016021 integral to membrane
Probab=68.14 E-value=1.2e+02 Score=29.50 Aligned_cols=39 Identities=18% Similarity=0.231 Sum_probs=29.5
Q ss_pred cchhhhhhcccccc--hhHHHHHHHHHHHHHHHHHHHHHHH
Q 018373 5 AYSWGIISDNYGRR--GRWMVALSAFWTAGTIFEASLAWVV 43 (357)
Q Consensus 5 a~~~g~~~d~~grr--g~~~~~~~~~~~~G~l~~~~i~~~~ 43 (357)
-++||..+|....+ .+...++..+-++|.+++..+....
T Consensus 163 lLFW~fAN~itt~~eAKRfYpl~g~ganigli~sG~~~~~~ 203 (491)
T PF03219_consen 163 LLFWGFANEITTVEEAKRFYPLFGLGANIGLIFSGQLTSYF 203 (491)
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35788888887766 7778888888888888876665443
No 263
>KOG2513 consensus Protein required for meiotic chromosome segregation [Cell cycle control, cell division, chromosome partitioning]
Probab=67.33 E-value=47 Score=32.78 Aligned_cols=79 Identities=23% Similarity=0.349 Sum_probs=40.3
Q ss_pred ccccc----hhHHHHHHHHHHHHHHHHHHHHHHHh-cCcchH-----HHHHHhh----HHHHHHHHHHhcCCCChHHHHH
Q 018373 14 NYGRR----GRWMVALSAFWTAGTIFEASLAWVVM-TRLNWR-----WLLAFSS----VPSFALLLFYGLAPESPRYLCA 79 (357)
Q Consensus 14 ~~grr----g~~~~~~~~~~~~G~l~~~~i~~~~~-~~~~WR-----~~~~~~~----~p~l~~~~~~~~lpESP~wL~~ 79 (357)
+++|| |.|...++....+|.+.-+.+-+... .+.-|. ...+... +..++-+++...+||+|+|...
T Consensus 523 Pfp~r~~~IG~Wq~~l~~lSvls~vtncaLi~~~~~~~~~~~~~s~~~~il~~V~~EH~~l~Lkflis~vipe~p~wva~ 602 (647)
T KOG2513|consen 523 PFPRRVANIGAWQNALELLSVLSCVTNCALIGMYPQVNKLWPLLSPENAILIIVILEHVLLLLKFLISSVIPESPRWVAA 602 (647)
T ss_pred CCcchhhhhHHHHHHHHHHHHHHHHHhHHHHhccccccccCcccchHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHH
Confidence 35665 77777777777777665443322111 112233 2222222 1222335566789999999953
Q ss_pred c--CChHHHHHHHHH
Q 018373 80 K--ARTVDAHRILEK 92 (357)
Q Consensus 80 ~--g~~~~a~~~l~~ 92 (357)
. ...-++++..+|
T Consensus 603 ~~~k~~~~~~e~~~k 617 (647)
T KOG2513|consen 603 GIAKAEFQAREAFKK 617 (647)
T ss_pred HHHHHHHHHHHhhhH
Confidence 2 123445555553
No 264
>PF00854 PTR2: POT family; InterPro: IPR000109 This entry represents the POT (proton-dependent oligopeptide transport) family, which all appear to be proton dependent transporters. The transport of peptides into cells is a well-documented biological phenomenon which is accomplished by specific, energy-dependent transporters found in a number of organisms as diverse as bacteria and humans. The POT family of proteins is distinct from the ABC-type peptide transporters and was uncovered by sequence analyses of a number of recently discovered peptide transport proteins []. These proteins that seem to be mainly involved in the intake of small peptides with the concomitant uptake of a proton []. These integral membrane proteins are predicted to comprise twelve transmembrane regions.; GO: 0005215 transporter activity, 0006857 oligopeptide transport, 0016020 membrane; PDB: 4APS_A 2XUT_C.
Probab=67.22 E-value=59 Score=30.10 Aligned_cols=64 Identities=13% Similarity=0.114 Sum_probs=42.8
Q ss_pred hhhhhhccccccCc---chhhHHHHHHHHHHHHHhHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHH
Q 018373 272 TVATIYAPEIYPTS---ARTTGFGVASSLGKVGGMVCPLVAVGLVTSCHLRLAVILFEVVFVLAIAS 335 (357)
Q Consensus 272 ~~~~~~~~ElfPt~---~R~~~~~~~~~~~~l~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 335 (357)
+-...+.+|.|+.+ .|..+..+-+...++|+.+++.+.+++-++.+....|.+-++..+++.+.
T Consensus 52 ~ni~~~~~dq~~~~~~~~~~~~F~~fY~~in~G~~~~~~~~~~i~~~~~~~~~f~i~~~~~~~~~~~ 118 (372)
T PF00854_consen 52 PNISPFGADQYDEDDDSRRDSFFNWFYWGINIGSLFSPTLVPYIQQNYGWFLGFGIPAIGMLLALIV 118 (372)
T ss_dssp HHHHHHHHHCSSTTTTTHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCS-HHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHhcccchhhhhhhHHHHHHHHhhhhHhhcccchhhccccchhhhhhHHHHHHHHHHHH
Confidence 34566788888876 45666777788888999988877777766555555555555555555443
No 265
>PF12832 MFS_1_like: MFS_1 like family
Probab=65.98 E-value=3.1 Score=29.01 Aligned_cols=23 Identities=26% Similarity=0.755 Sum_probs=17.9
Q ss_pred ccccchhhhhhcccccchhHHHH
Q 018373 2 LLGAYSWGIISDNYGRRGRWMVA 24 (357)
Q Consensus 2 ~~ga~~~g~~~d~~grrg~~~~~ 24 (357)
++++.+||.++||++|+....-.
T Consensus 49 ~~~~pl~g~laDk~~~~~~~l~~ 71 (77)
T PF12832_consen 49 FLAPPLWGFLADKFGKRKVILLG 71 (77)
T ss_pred HHHHHHHHHHHHHHCccHHHHHH
Confidence 46788999999999998655443
No 266
>PF07672 MFS_Mycoplasma: Mycoplasma MFS transporter; InterPro: IPR011699 These proteins share some similarity with members of the Major Facilitator Superfamily (MFS).
Probab=65.29 E-value=98 Score=27.32 Aligned_cols=52 Identities=19% Similarity=0.289 Sum_probs=34.3
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHhc-----CcchHHHHHHhhHHHHHHHHHHh
Q 018373 17 RRGRWMVALSAFWTAGTIFEASLAWVVMT-----RLNWRWLLAFSSVPSFALLLFYG 68 (357)
Q Consensus 17 rrg~~~~~~~~~~~~G~l~~~~i~~~~~~-----~~~WR~~~~~~~~p~l~~~~~~~ 68 (357)
+|+.+......++++|++++.+-.....+ ...|++.+.+.++..++-++...
T Consensus 3 ~K~~~s~~n~~gf~iG~ii~~ipF~~~~~~~~~~~~~W~~I~si~~lL~~IpLIly~ 59 (267)
T PF07672_consen 3 KKSILSQFNPWGFNIGTIIVNIPFLISSSVVIALTNNWQWILSIFILLIFIPLILYI 59 (267)
T ss_pred ccceeeeeccccchhhHHHHHhhHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56777788888999999987543222101 24699998888766665554443
No 267
>KOG2881 consensus Predicted membrane protein [Function unknown]
Probab=61.41 E-value=81 Score=27.68 Aligned_cols=30 Identities=17% Similarity=0.089 Sum_probs=17.9
Q ss_pred hhHHHHHHHHHHhhchhHHHHHHHHHHHHH
Q 018373 214 LPGLILSAIIVDKIGRKLSMVLMFVSACIF 243 (357)
Q Consensus 214 ~~~~~~~~~l~d~~GRR~~~~~~~~~~~i~ 243 (357)
.++.+-+-+++.|+.-|+..+++.+...++
T Consensus 254 ~lAVigGk~lAskIS~rtVt~~ggi~Fi~F 283 (294)
T KOG2881|consen 254 GLAVIGGKYLASKISVRTVTLIGGILFIIF 283 (294)
T ss_pred HHHHhhhHHHhhhheeEEEEEecchhHHHH
Confidence 333444457888888887666555544444
No 268
>KOG3098 consensus Uncharacterized conserved protein [Function unknown]
Probab=59.42 E-value=1.7e+02 Score=28.21 Aligned_cols=99 Identities=17% Similarity=0.181 Sum_probs=54.9
Q ss_pred HHHHHHhhhhhHHHHHHHHHHh---hchhHHHHHHHHHHHHHHHHHH--hhhh----------------hHHHHHHHHHH
Q 018373 205 DVFIASLAELPGLILSAIIVDK---IGRKLSMVLMFVSACIFLLPLV--FHQS----------------AVVTTVLLFGV 263 (357)
Q Consensus 205 ~~~i~~~~~~~~~~~~~~l~d~---~GRR~~~~~~~~~~~i~~~~~~--~~~~----------------~~~~~~~~~~~ 263 (357)
..+..+++++.+.+..+.+.+| +||++.+.+...+-.+..+... .+.+ .....+..+..
T Consensus 284 ~~~~~g~g~v~~g~~~~~l~~rir~fg~~~~~~~~~~~~~~~~~li~l~~p~dap~~~t~~~~~~~~~~~~~~~ii~~l~ 363 (461)
T KOG3098|consen 284 YSIGIGLGEVIGGLDFSILSKRIRGFGRKPTVLIGIIIHLIGFLLIHLSFPNDAPLRPTDSPPLLFTPSYYLALIIGFLL 363 (461)
T ss_pred HHHHHhHHHHHHHHHHHHHhhhhhhcccCcchhHHHHHHHHHHHHHhccccccCCCCCCcccccccccchhHHHHHHHHH
Confidence 3456678888888888887765 5888877766554443333222 1110 01111222222
Q ss_pred HHHhhhhhhhhhhhccccccCcchhhHHHHHHHHHHHHHhH
Q 018373 264 RMCVTGTITVATIYAPEIYPTSARTTGFGVASSLGKVGGMV 304 (357)
Q Consensus 264 ~~~~~~~~~~~~~~~~ElfPt~~R~~~~~~~~~~~~l~~~~ 304 (357)
++.-....+..+.+...++ ++.|+.+.++.-.-..+.+.+
T Consensus 364 G~~D~~~~t~~~~ii~~~~-~~~~~~~fsi~kfyq~~~s~v 403 (461)
T KOG3098|consen 364 GFGDACFNTQRYVIIALLY-PDDRAQAFSLFKFYQSVASCV 403 (461)
T ss_pred hhHHHHHHHHHHHHHHHHh-cCchHHHHHHHHHHHHHHHHH
Confidence 2221223356788888888 567888877775555444433
No 269
>PRK03612 spermidine synthase; Provisional
Probab=58.55 E-value=1.9e+02 Score=28.43 Aligned_cols=45 Identities=18% Similarity=0.074 Sum_probs=25.3
Q ss_pred hHHHHHHHHHHHHHhHHHHHHHHHHh-hcchhhHHHHHHHHHHHHH
Q 018373 289 TGFGVASSLGKVGGMVCPLVAVGLVT-SCHLRLAVILFEVVFVLAI 333 (357)
Q Consensus 289 ~~~~~~~~~~~l~~~~~p~~~~~l~~-~~~~~~~~~~~~~~~~~~~ 333 (357)
...|-.++.+.+|+++++.+...++- ..+.....++.+.++++++
T Consensus 145 ~~~g~ly~~ntlGa~~G~l~~~~vLlp~lG~~~t~~~~a~l~~~~a 190 (521)
T PRK03612 145 HNVATVLAADYLGALVGGLAFPFLLLPRLGLIRTAALTGSLNLLAA 190 (521)
T ss_pred hhhhhhHhHHhHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHH
Confidence 44667777777777777766654332 3443344445554444333
No 270
>PF06779 DUF1228: Protein of unknown function (DUF1228); InterPro: IPR010645 This entry represents the N terminus of several putative bacterial membrane proteins, which may be sugar transporters. Note that many members are hypothetical proteins.
Probab=58.51 E-value=48 Score=23.64 Aligned_cols=45 Identities=11% Similarity=0.089 Sum_probs=30.4
Q ss_pred HHhhhhhHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHhhhhh
Q 018373 209 ASLAELPGLILSAIIVDKIGRKLSMVLMFVSACIFLLPLVFHQSA 253 (357)
Q Consensus 209 ~~~~~~~~~~~~~~l~d~~GRR~~~~~~~~~~~i~~~~~~~~~~~ 253 (357)
..++-++|.+...++.++.++|+.+..+.+.+.++...+...++.
T Consensus 36 Ny~GYL~GAl~~~~~~~~~~~~~~~~~~l~~~~~~~~~ma~~~~~ 80 (85)
T PF06779_consen 36 NYLGYLVGALLASRLPRHSRPRRLLRAGLLLTVLSTAAMALTHSF 80 (85)
T ss_pred HHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHhch
Confidence 445556777777777777777777877777777766665554433
No 271
>PF12854 PPR_1: PPR repeat
Probab=55.37 E-value=10 Score=21.52 Aligned_cols=17 Identities=24% Similarity=0.616 Sum_probs=14.2
Q ss_pred HHHcCChHHHHHHHHHH
Q 018373 77 LCAKARTVDAHRILEKM 93 (357)
Q Consensus 77 L~~~g~~~~a~~~l~~l 93 (357)
+.+.|+.++|.+.++++
T Consensus 17 ~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 17 YCKAGRVDEAFELFDEM 33 (34)
T ss_pred HHHCCCHHHHHHHHHhC
Confidence 56899999999988764
No 272
>PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1. It is thought to be involved in iron export from duodenal epithelial cells and also in transfer of iron between maternal and fetal circulation. This family of proteins is known to be localised in the basolateral membrane of polarized epithelial cells [].; GO: 0005381 iron ion transmembrane transporter activity, 0034755 iron ion transmembrane transport, 0016021 integral to membrane
Probab=54.29 E-value=2e+02 Score=27.47 Aligned_cols=98 Identities=19% Similarity=0.222 Sum_probs=58.2
Q ss_pred HHHhhhhhHHHHHHHHHHhhchhHHHHHHHHHHHHHHH----HHHhhhhh--HHHHHHHH-HHHHHhhhhhh---hhhhh
Q 018373 208 IASLAELPGLILSAIIVDKIGRKLSMVLMFVSACIFLL----PLVFHQSA--VVTTVLLF-GVRMCVTGTIT---VATIY 277 (357)
Q Consensus 208 i~~~~~~~~~~~~~~l~d~~GRR~~~~~~~~~~~i~~~----~~~~~~~~--~~~~~~~~-~~~~~~~~~~~---~~~~~ 277 (357)
+..+.++.|+++..++.+|+|-.+.=+++...-.+++. .+....++ ......++ .....=.|.++ ...-+
T Consensus 301 ~gav~Gl~gT~~~p~l~~riGlvr~G~~~l~~q~~~L~~~v~~~~~~~~~~~~~s~~~l~~gi~~SR~GLW~fDL~~~qi 380 (432)
T PF06963_consen 301 LGAVFGLLGTWVYPWLMKRIGLVRAGLWSLWWQWVCLALCVVSFWAPGSPFSSISAYLLLGGIALSRIGLWSFDLAVTQI 380 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHHHHHHHHHhhhHHHHHh
Confidence 45667788899999999999988776555443222221 11222221 22222222 11111123332 34567
Q ss_pred ccccccCcchhhHHHHHHHHHHHHHhHH
Q 018373 278 APEIYPTSARTTGFGVASSLGKVGGMVC 305 (357)
Q Consensus 278 ~~ElfPt~~R~~~~~~~~~~~~l~~~~~ 305 (357)
.-|.-|.+.|++.+|.=++...+...+.
T Consensus 381 ~Qe~V~~~~Rg~v~gvq~sl~~lf~ll~ 408 (432)
T PF06963_consen 381 MQENVPESERGAVSGVQNSLQSLFELLS 408 (432)
T ss_pred hcccCCHHHhhHHHHHHHHHHHHHHHHH
Confidence 8899999999999999888887765544
No 273
>KOG4686 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]
Probab=52.20 E-value=37 Score=30.61 Aligned_cols=14 Identities=43% Similarity=0.705 Sum_probs=12.2
Q ss_pred cchhhhhhcccccc
Q 018373 5 AYSWGIISDNYGRR 18 (357)
Q Consensus 5 a~~~g~~~d~~grr 18 (357)
+-++|.++|++||+
T Consensus 317 spvfg~i~Dk~G~n 330 (459)
T KOG4686|consen 317 SPVFGAISDKYGFN 330 (459)
T ss_pred hhhHHHhHhhhcce
Confidence 45789999999999
No 274
>PF11151 DUF2929: Protein of unknown function (DUF2929); InterPro: IPR021324 This family of proteins with unknown function appears to be restricted to Firmicutes.
Probab=51.94 E-value=64 Score=20.98 Aligned_cols=44 Identities=7% Similarity=0.043 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHHHhcCcchHHHHHHhhHHHHHHHHHHhcCCCCh
Q 018373 31 AGTIFEASLAWVVMTRLNWRWLLAFSSVPSFALLLFYGLAPESP 74 (357)
Q Consensus 31 ~G~l~~~~i~~~~~~~~~WR~~~~~~~~p~l~~~~~~~~lpESP 74 (357)
+|.+++++.+-......+++....++.+.+++....-..+|..|
T Consensus 13 l~~vvgyI~ssL~~~~~n~~~~~Ii~vi~~i~~~~~~~~i~~~~ 56 (57)
T PF11151_consen 13 LGEVVGYIGSSLTGVTYNFTTAAIIAVIFGIIVANIIAVIPKKS 56 (57)
T ss_pred HHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHHHHHHcCCCC
Confidence 44444444443444467889889999888888877777777655
No 275
>KOG1479 consensus Nucleoside transporter [Nucleotide transport and metabolism]
Probab=49.98 E-value=2.3e+02 Score=26.82 Aligned_cols=29 Identities=17% Similarity=0.160 Sum_probs=21.3
Q ss_pred chHHHHHHhhHHHHHHHHHHhcCCCChHH
Q 018373 48 NWRWLLAFSSVPSFALLLFYGLAPESPRY 76 (357)
Q Consensus 48 ~WR~~~~~~~~p~l~~~~~~~~lpESP~w 76 (357)
+=-..|+++.+..+++++....+|..|-.
T Consensus 181 sA~~yF~~s~~~~llC~i~y~~l~~lpf~ 209 (406)
T KOG1479|consen 181 SALIYFITSTVILLLCFVLYLVLPKLPFV 209 (406)
T ss_pred eeehhHHHHHHHHHHHHHHHHHhhcchHH
Confidence 44456788888888888777788888854
No 276
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=44.66 E-value=21 Score=18.90 Aligned_cols=18 Identities=17% Similarity=0.372 Sum_probs=14.6
Q ss_pred HHcCChHHHHHHHHHHHH
Q 018373 78 CAKARTVDAHRILEKMAF 95 (357)
Q Consensus 78 ~~~g~~~~a~~~l~~l~~ 95 (357)
.+.|+.++|.+.++++.+
T Consensus 11 ~~~~~~~~a~~~~~~M~~ 28 (31)
T PF01535_consen 11 CKMGQFEEALEVFDEMRE 28 (31)
T ss_pred HccchHHHHHHHHHHHhH
Confidence 467889999999888764
No 277
>PF11947 DUF3464: Protein of unknown function (DUF3464); InterPro: IPR021855 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 137 to 196 amino acids in length.
Probab=44.34 E-value=1.6e+02 Score=23.56 Aligned_cols=78 Identities=6% Similarity=0.130 Sum_probs=43.4
Q ss_pred HHHHhhchhHHHHHHHH---HHHHHHHHHHhh-h----hhHHHHHHHHHHHHHhhhhhhhhhhhccccccCcchhhHHHH
Q 018373 222 IIVDKIGRKLSMVLMFV---SACIFLLPLVFH-Q----SAVVTTVLLFGVRMCVTGTITVATIYAPEIYPTSARTTGFGV 293 (357)
Q Consensus 222 ~l~d~~GRR~~~~~~~~---~~~i~~~~~~~~-~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~ElfPt~~R~~~~~~ 293 (357)
.+.||+-||..+..+.- +.+.+.+..+.. . -+.+.+. +....+|..+..++.|-+.|-.+..+.-+.-.|+
T Consensus 56 ~Vs~RM~rRm~~~~GiP~~lG~~~f~~~y~l~~~~~~dvP~~~~~-~~S~~~Fg~gllGisYGilSaSWD~~r~GSllG~ 134 (153)
T PF11947_consen 56 VVSNRMLRRMAVFVGIPTALGVAVFVVFYYLKSRQIVDVPPWAVL-LVSLVFFGLGLLGISYGILSASWDPEREGSLLGW 134 (153)
T ss_pred HHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHhccccccCchHHH-HHHHHHHHHHHHhhhhhhcccccCCCCCCCcccH
Confidence 35689988888765332 222222211111 1 1122222 2222234445567889889989999888888888
Q ss_pred HHHHHHH
Q 018373 294 ASSLGKV 300 (357)
Q Consensus 294 ~~~~~~l 300 (357)
-..--++
T Consensus 135 ~e~~~N~ 141 (153)
T PF11947_consen 135 EEFKRNW 141 (153)
T ss_pred HHHHHhH
Confidence 7655444
No 278
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=44.21 E-value=35 Score=18.39 Aligned_cols=20 Identities=25% Similarity=0.434 Sum_probs=16.6
Q ss_pred HHHcCChHHHHHHHHHHHHH
Q 018373 77 LCAKARTVDAHRILEKMAFV 96 (357)
Q Consensus 77 L~~~g~~~~a~~~l~~l~~~ 96 (357)
+.++|+.++|.+.++++.+.
T Consensus 10 ~~~~~~~~~a~~~~~~M~~~ 29 (35)
T TIGR00756 10 LCKAGRVEEALELFKEMLER 29 (35)
T ss_pred HHHCCCHHHHHHHHHHHHHc
Confidence 45789999999999998763
No 279
>KOG3574 consensus Acetyl-CoA transporter [Inorganic ion transport and metabolism]
Probab=43.28 E-value=59 Score=30.62 Aligned_cols=30 Identities=17% Similarity=0.294 Sum_probs=22.0
Q ss_pred hhhhhccccccCcchhhHHHHHHHHHHHHH
Q 018373 273 VATIYAPEIYPTSARTTGFGVASSLGKVGG 302 (357)
Q Consensus 273 ~~~~~~~ElfPt~~R~~~~~~~~~~~~l~~ 302 (357)
...++.+.+-|+++-+|=+.+-+...++|+
T Consensus 389 ~~maf~aqisdp~iggTymTlLNTLsnLGg 418 (510)
T KOG3574|consen 389 SGMAFHAQISDPAIGGTYMTLLNTLSNLGG 418 (510)
T ss_pred HHHHHHhhcCCcccCccHHHHHHHHHHhcC
Confidence 345567777888888888888887777754
No 280
>PF13041 PPR_2: PPR repeat family
Probab=41.57 E-value=36 Score=20.89 Aligned_cols=21 Identities=14% Similarity=0.279 Sum_probs=17.5
Q ss_pred HHHHcCChHHHHHHHHHHHHH
Q 018373 76 YLCAKARTVDAHRILEKMAFV 96 (357)
Q Consensus 76 wL~~~g~~~~a~~~l~~l~~~ 96 (357)
.+.++|+.++|.+.++++.+.
T Consensus 12 ~~~~~~~~~~a~~l~~~M~~~ 32 (50)
T PF13041_consen 12 GYCKAGKFEEALKLFKEMKKR 32 (50)
T ss_pred HHHHCcCHHHHHHHHHHHHHc
Confidence 356789999999999998764
No 281
>PF00854 PTR2: POT family; InterPro: IPR000109 This entry represents the POT (proton-dependent oligopeptide transport) family, which all appear to be proton dependent transporters. The transport of peptides into cells is a well-documented biological phenomenon which is accomplished by specific, energy-dependent transporters found in a number of organisms as diverse as bacteria and humans. The POT family of proteins is distinct from the ABC-type peptide transporters and was uncovered by sequence analyses of a number of recently discovered peptide transport proteins []. These proteins that seem to be mainly involved in the intake of small peptides with the concomitant uptake of a proton []. These integral membrane proteins are predicted to comprise twelve transmembrane regions.; GO: 0005215 transporter activity, 0006857 oligopeptide transport, 0016020 membrane; PDB: 4APS_A 2XUT_C.
Probab=39.52 E-value=47 Score=30.79 Aligned_cols=52 Identities=13% Similarity=0.238 Sum_probs=39.0
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHhhHHHHHHHHHHh
Q 018373 17 RRGRWMVALSAFWTAGTIFEASLAWVVMTRLNWRWLLAFSSVPSFALLLFYG 68 (357)
Q Consensus 17 rrg~~~~~~~~~~~~G~l~~~~i~~~~~~~~~WR~~~~~~~~p~l~~~~~~~ 68 (357)
||.....++..+.++|.+++....-++.++.+|.+.|++..+-.++.++...
T Consensus 69 ~~~~~F~~fY~~in~G~~~~~~~~~~i~~~~~~~~~f~i~~~~~~~~~~~f~ 120 (372)
T PF00854_consen 69 RRDSFFNWFYWGINIGSLFSPTLVPYIQQNYGWFLGFGIPAIGMLLALIVFL 120 (372)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCCCHHHHCS-HHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhHHHHHHHHhhhhHhhcccchhhccccchhhhhhHHHHHHHHHHHHHH
Confidence 4566778889999999998866554455679999999999887776665543
No 282
>COG5336 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=38.68 E-value=83 Score=23.48 Aligned_cols=22 Identities=18% Similarity=0.236 Sum_probs=15.2
Q ss_pred HHHHHHHHhh-chhHHHHHHHHH
Q 018373 218 ILSAIIVDKI-GRKLSMVLMFVS 239 (357)
Q Consensus 218 ~~~~~l~d~~-GRR~~~~~~~~~ 239 (357)
...||+.||+ |.+++.++.+.+
T Consensus 60 a~iG~llD~~agTsPwglIv~ll 82 (116)
T COG5336 60 AGIGWLLDKFAGTSPWGLIVFLL 82 (116)
T ss_pred HHHHHHHHHhcCCCcHHHHHHHH
Confidence 3457888985 888887665443
No 283
>KOG3810 consensus Micronutrient transporters (folate transporter family) [Coenzyme transport and metabolism]
Probab=37.38 E-value=3.5e+02 Score=25.34 Aligned_cols=57 Identities=19% Similarity=0.134 Sum_probs=31.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHh--cCcchHHHHHHhhHHHHHHHHHHhcCCCChHHH
Q 018373 21 WMVALSAFWTAGTIFEASLAWVVM--TRLNWRWLLAFSSVPSFALLLFYGLAPESPRYL 77 (357)
Q Consensus 21 ~~~~~~~~~~~G~l~~~~i~~~~~--~~~~WR~~~~~~~~p~l~~~~~~~~lpESP~wL 77 (357)
..+..-...-.|...+..++..+. ...+.+.+-.++..-..+......++|--+|=+
T Consensus 131 vt~y~RaA~L~g~~~g~vlaQlLvs~~~~sy~~LN~ISL~~~~ia~~~A~fLP~v~rSl 189 (433)
T KOG3810|consen 131 VTGYCRAAFLVGKFVGSVLAQLLVSLETLSYTTLNYISLAEVTIAVLLALFLPRVKRSL 189 (433)
T ss_pred HHHHhHHHHHHHhHHHhHHHHHHhhhcccchhhhchhhHHHHHHHHHHHhhCCCCchhh
Confidence 344444444555555555544332 335666666666666666666777777666544
No 284
>COG5336 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=36.40 E-value=1.8e+02 Score=21.73 Aligned_cols=53 Identities=13% Similarity=-0.016 Sum_probs=34.5
Q ss_pred CcchhhHHHHHHHHHHHHHhHHHHHHHHHHhhcc--hhhHHHHHHHHHHHHHHHH
Q 018373 284 TSARTTGFGVASSLGKVGGMVCPLVAVGLVTSCH--LRLAVILFEVVFVLAIASS 336 (357)
Q Consensus 284 t~~R~~~~~~~~~~~~l~~~~~p~~~~~l~~~~~--~~~~~~~~~~~~~~~~~~~ 336 (357)
++.++.+.++-...-.+++++....+.++++..- .+|..++|..+.+.+.+..
T Consensus 37 ~s~k~~~~a~klssefIsGilVGa~iG~llD~~agTsPwglIv~lllGf~AG~ln 91 (116)
T COG5336 37 ESIKGYAQAFKLSSEFISGILVGAGIGWLLDKFAGTSPWGLIVFLLLGFGAGVLN 91 (116)
T ss_pred hhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHH
Confidence 4577788888777777878777777788887632 2344555655555554443
No 285
>KOG3574 consensus Acetyl-CoA transporter [Inorganic ion transport and metabolism]
Probab=34.00 E-value=4.2e+02 Score=25.25 Aligned_cols=30 Identities=40% Similarity=0.468 Sum_probs=19.0
Q ss_pred HHHHHHH-----hhchhHHHHH-HHHHHHHHHHHHH
Q 018373 219 LSAIIVD-----KIGRKLSMVL-MFVSACIFLLPLV 248 (357)
Q Consensus 219 ~~~~l~d-----~~GRR~~~~~-~~~~~~i~~~~~~ 248 (357)
+-..++| |+|||+..++ +..+.+.++..+.
T Consensus 82 lWaPiVDs~y~k~~GrrksWvvp~q~llG~~mllLs 117 (510)
T KOG3574|consen 82 LWAPIVDSVYSKRFGRRKSWVVPCQYLLGLFMLLLS 117 (510)
T ss_pred HHHhhhHHHHHHhhccccceeeehHHHHHHHHHHHh
Confidence 3455666 9999998765 4444455555443
No 286
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=33.68 E-value=83 Score=18.65 Aligned_cols=22 Identities=18% Similarity=0.221 Sum_probs=17.6
Q ss_pred HHHHHcCChHHHHHHHHHHHHH
Q 018373 75 RYLCAKARTVDAHRILEKMAFV 96 (357)
Q Consensus 75 ~wL~~~g~~~~a~~~l~~l~~~ 96 (357)
+.+...|+.++|++.+++.-+.
T Consensus 9 ~~~~~~G~~~~A~~~~~~~l~~ 30 (44)
T PF13428_consen 9 RAYRRLGQPDEAERLLRRALAL 30 (44)
T ss_pred HHHHHcCCHHHHHHHHHHHHHH
Confidence 3456789999999999987654
No 287
>PRK10263 DNA translocase FtsK; Provisional
Probab=31.86 E-value=7.6e+02 Score=27.53 Aligned_cols=21 Identities=24% Similarity=0.381 Sum_probs=14.5
Q ss_pred HHhhhhhHHHHHHHHHHhhch
Q 018373 209 ASLAELPGLILSAIIVDKIGR 229 (357)
Q Consensus 209 ~~~~~~~~~~~~~~l~d~~GR 229 (357)
.+.++.+|..++..+..-+|-
T Consensus 61 ~Nl~GiVGA~LAD~L~~LFGl 81 (1355)
T PRK10263 61 HNLGGMPGAWLADTLFFIFGV 81 (1355)
T ss_pred ccccchHHHHHHHHHHHHHhH
Confidence 456667777777777777774
No 288
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=31.73 E-value=73 Score=17.16 Aligned_cols=18 Identities=11% Similarity=0.104 Sum_probs=14.9
Q ss_pred HcCChHHHHHHHHHHHHH
Q 018373 79 AKARTVDAHRILEKMAFV 96 (357)
Q Consensus 79 ~~g~~~~a~~~l~~l~~~ 96 (357)
+.|+.++|.++++.+++.
T Consensus 13 ~~g~~~~a~~~~~~M~~~ 30 (34)
T PF13812_consen 13 KAGDPDAALQLFDEMKEQ 30 (34)
T ss_pred HCCCHHHHHHHHHHHHHh
Confidence 578899999999888763
No 289
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=29.89 E-value=45 Score=17.35 Aligned_cols=14 Identities=29% Similarity=0.411 Sum_probs=10.8
Q ss_pred HHcCChHHHHHHHH
Q 018373 78 CAKARTVDAHRILE 91 (357)
Q Consensus 78 ~~~g~~~~a~~~l~ 91 (357)
...|+.++|++.++
T Consensus 12 ~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 12 LAQGDPDEAERLLR 25 (26)
T ss_pred HHcCCHHHHHHHHh
Confidence 46899999987664
No 290
>PF03186 CobD_Cbib: CobD/Cbib protein; InterPro: IPR004485 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. This entry represents the CbiB protein, which is involved in cobalamin biosynthesis and porphyrin biosynthesis. It converts cobyric acid to cobinamide by the addition of aminopropanol on the F carboxylic group. It is part of the cob operon [].; GO: 0009236 cobalamin biosynthetic process, 0016021 integral to membrane
Probab=29.53 E-value=1.4e+02 Score=26.80 Aligned_cols=18 Identities=11% Similarity=-0.010 Sum_probs=14.1
Q ss_pred HcCChHHHHHHHHHHHHH
Q 018373 79 AKARTVDAHRILEKMAFV 96 (357)
Q Consensus 79 ~~g~~~~a~~~l~~l~~~ 96 (357)
.+|+.++|++.++++-+.
T Consensus 107 ~~gdl~~AR~~l~~lv~R 124 (295)
T PF03186_consen 107 EAGDLEAARQALSPLVGR 124 (295)
T ss_pred hcCCHHHHHHHHHHhhCC
Confidence 577889999988887554
No 291
>COG4291 Predicted membrane protein [Function unknown]
Probab=29.30 E-value=1.3e+02 Score=25.20 Aligned_cols=16 Identities=44% Similarity=0.571 Sum_probs=10.8
Q ss_pred hcCCCChHHHHHcCCh
Q 018373 68 GLAPESPRYLCAKART 83 (357)
Q Consensus 68 ~~lpESP~wL~~~g~~ 83 (357)
....-||+++.++-|.
T Consensus 65 ~lp~~tp~~l~a~Ar~ 80 (228)
T COG4291 65 RLPRLTPSYLKAHARR 80 (228)
T ss_pred hcccCCHHHHHHhccc
Confidence 3445599999876554
No 292
>PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age. The disease is characterised by progressive loss of vision, seizures and psychomotor disturbances. Biochemically, the disease is characterised by lysosomal accumulation of hydrophobic material, mainly ATP synthase subunit C, largely in the brain but also in other tissues. The disease is fatal within a decade []. Mutations in the CLN3 gene are believed to cause Batten's disease []. The CLN3 gene, with a predicted 438-residue product, maps to chromosome p16p12.1. The gene contains at least 15 exons spanning 15kb and is highly conserved in mammals []. A 1.02kb deletion in the CLN3 gene, occurring in either one or both alleles, is found in 85% of Batten disease chromosomes causing a frameshift generating a predicted translated product of 181 amino acid residues [, ]. 22 other mutations, including deletions, insertions and point mutations, have been reported. It has been suggested that such mutations result in severely truncated CLN3 proteins, or affect its structure/conformation [, ]. CLN3 proteins, which are believed to associate in complexes, are heavily glycosylated lysosomal membrane proteins [], containing complex Asn-linked oligosaccharides []. Extensive glycosylation is important for the stability of these lysosomal proteins in the highly hydrolytic lysosomal lumen. Lysosomal sequestration of active lysosomal enzymes, transport of degraded molecules from the lysosomes, and fusion and fission between lysosomes and other organelles. The CLN3 protein is a 43kDa, highly hydrophobic, multi-transmembrane (TM), phosphorylated protein []. Hydrophobicity analysis predicts 6-9 TM segments, suggesting that CLN3 is a TM protein that may function as a chaperone or signal transducer. The majority of putative phosphorylation sites are found in the N-terminal domain, encompassing 150 residues []. Phosphorylation is believed to be important for membrane compartment interaction, in the formation of functional complexes, and in regulation and interactions with other proteins []. CLN3 contains several motifs that may undergo lipid post-translational modifications (PTMs). PTMs contribute to targeting and anchoring of modified proteins to distinct biological membranes []. There are three general classes of lipid modification: N-terminal myristoylation, C-terminal prenylation, and palmitoylation of cysteine residues. Such modifications are believed to be a common form of PTM occurring in 0.5% of all cellular proteins, including brain tissue []. The C terminus of the CLN3 contains various lipid modification sites: C435, target for prenylation; G419, target for myristoylation; and C414, target for palmitoylation []. Prenylation results in protein hydrophobicity, influences interaction with upstream regulatory proteins and downstream effectors, facilitates protein-protein interaction (multisubunit assembly) and promotes anchoring to membrane lipids. The prenylation motif, Cys-A-A-X, is highly conserved within CLN3 protein sequences of different species []. Species with known CLN3 protein homologues include: Homo sapiens, Canis familiaris, Mus musculus, Saccharomyces cerevisiae and Drosophila melanogaster.; GO: 0016020 membrane
Probab=29.01 E-value=5.1e+02 Score=24.59 Aligned_cols=24 Identities=4% Similarity=0.249 Sum_probs=14.6
Q ss_pred hhhHHHHHHHHHHhhc--hhHHHHHH
Q 018373 213 ELPGLILSAIIVDKIG--RKLSMVLM 236 (357)
Q Consensus 213 ~~~~~~~~~~l~d~~G--RR~~~~~~ 236 (357)
.++.-+++.+.++|+. .|......
T Consensus 72 ~l~~Kl~aP~fi~~v~y~~Ri~~~~~ 97 (402)
T PF02487_consen 72 SLLVKLIAPFFIHRVPYWIRILICVA 97 (402)
T ss_pred HHHHHHHhHhhhhhccchHHHHHHHH
Confidence 3444566778888874 55554443
No 293
>COG4708 Predicted membrane protein [Function unknown]
Probab=27.84 E-value=92 Score=24.56 Aligned_cols=26 Identities=35% Similarity=0.758 Sum_probs=22.4
Q ss_pred HHHHhhhhhHHHHHHHHHHhhchhHH
Q 018373 207 FIASLAELPGLILSAIIVDKIGRKLS 232 (357)
Q Consensus 207 ~i~~~~~~~~~~~~~~l~d~~GRR~~ 232 (357)
...++++.++..+++.++|++|+|.-
T Consensus 141 ~tta~gEfvsl~vg~~~m~kl~kr~~ 166 (169)
T COG4708 141 FTTALGEFVSLYVGALIMDKLGKRID 166 (169)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHhhhc
Confidence 45678899999999999999999963
No 294
>KOG3097 consensus Predicted membrane protein [Function unknown]
Probab=26.96 E-value=4.9e+02 Score=24.19 Aligned_cols=31 Identities=16% Similarity=0.460 Sum_probs=21.8
Q ss_pred hhHHHHHHHHHHhhchhHHHHHHHHHHHHHH
Q 018373 214 LPGLILSAIIVDKIGRKLSMVLMFVSACIFL 244 (357)
Q Consensus 214 ~~~~~~~~~l~d~~GRR~~~~~~~~~~~i~~ 244 (357)
+..+++.+.++.++|-|+++..+........
T Consensus 72 ~~s~m~~~~~Ir~~g~K~tm~lav~~Y~lyi 102 (390)
T KOG3097|consen 72 IDSSMFMPLLIRFLGTKWTMVLAVFPYALYI 102 (390)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 3445556689999999999987765544433
No 295
>PF13000 Acatn: Acetyl-coenzyme A transporter 1; InterPro: IPR024371 Acetyl-coenzyme A transporter 1 (also known as acatn) is a multipass transmembrane protein that appears to promote 9-O-acetylation in gangliosides [, ]. This entry represents acatn and its homologues.; GO: 0008521 acetyl-CoA transporter activity, 0016021 integral to membrane
Probab=26.72 E-value=6.3e+02 Score=24.92 Aligned_cols=32 Identities=13% Similarity=0.248 Sum_probs=24.1
Q ss_pred hhhhhhhccccccCcchhhHHHHHHHHHHHHH
Q 018373 271 ITVATIYAPEIYPTSARTTGFGVASSLGKVGG 302 (357)
Q Consensus 271 ~~~~~~~~~ElfPt~~R~~~~~~~~~~~~l~~ 302 (357)
+....++-+.+-.+.+=+|=+.+-+.++++|+
T Consensus 423 FVai~AFharISDP~IGGTYMTLLNTvSNLGG 454 (544)
T PF13000_consen 423 FVAIMAFHARISDPAIGGTYMTLLNTVSNLGG 454 (544)
T ss_pred HHHHHHHHhhccCcccchHHHHHHHHHHhcCC
Confidence 34455666777778888888888888888865
No 296
>TIGR00986 3a0801s05tom22 mitochondrial import receptor subunit Tom22. translocase (Tom) import receptor, five proteins of the Tom channel complex, five proteins of the inner membrane translocase (Tim) and three "motor" proteins. This family is specific for the Tom22 proteins.
Probab=26.56 E-value=1.1e+02 Score=24.08 Aligned_cols=22 Identities=18% Similarity=0.170 Sum_probs=17.1
Q ss_pred ccccccCcchhhHHHHHHHHHH
Q 018373 278 APEIYPTSARTTGFGVASSLGK 299 (357)
Q Consensus 278 ~~ElfPt~~R~~~~~~~~~~~~ 299 (357)
..|+||...|....+......+
T Consensus 58 LkDm~Pp~~R~~i~~~~s~t~s 79 (145)
T TIGR00986 58 LKDIVPPTTRGWIYHKYSTTTN 79 (145)
T ss_pred HHhhCCHHHHHHHHHHHHHHHH
Confidence 5799999999988777665543
No 297
>TIGR02978 phageshock_pspC phage shock protein C. All members of this protein family are the phage shock protein PspC. These proteins contain a PspC domain, as do other members of the larger family of proteins described by Pfam model pfam04024. The phage shock regulon is restricted to the Proteobacteria and somewhat sparsely distributed there. It is expressed, under positive control of a sigma-54-dependent transcription factor, PspF, which binds and is modulated by PspA. Stresses that induce the psp regulon include phage secretin overexpression, ethanol, heat shock, and protein export defects.
Probab=26.46 E-value=1e+02 Score=23.67 Aligned_cols=32 Identities=13% Similarity=0.081 Sum_probs=17.7
Q ss_pred cCcchHHHHHHhhHHH-----HH-HHHHHhcCCCChHH
Q 018373 45 TRLNWRWLLAFSSVPS-----FA-LLLFYGLAPESPRY 76 (357)
Q Consensus 45 ~~~~WR~~~~~~~~p~-----l~-~~~~~~~lpESP~w 76 (357)
+.+-.|+.|++..+.. ++ =++..+.+|+-|.-
T Consensus 27 ~~~~VRl~~vl~~~~~~~~~~ll~Y~i~w~~lp~~p~~ 64 (121)
T TIGR02978 27 EVWLVRILVVSALLFGGGFFVLVAYIALWLLLDKKPIN 64 (121)
T ss_pred CHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCccc
Confidence 3455677776655432 12 13355678887743
No 298
>PF05297 Herpes_LMP1: Herpesvirus latent membrane protein 1 (LMP1); InterPro: IPR007961 This family consists of several latent membrane protein 1 or LMP1s mostly from Epstein-Barr virus (strain GD1) (HHV-4) (Human herpesvirus 4). LMP1 of HHV-4 is a 62-65 kDa plasma membrane protein possessing six membrane spanning regions, a short cytoplasmic N terminus and a long cytoplasmic carboxy tail of 200 amino acids. HHV-4 virus latent membrane protein 1 (LMP1) is essential for HHV-4 mediated transformation and has been associated with several cases of malignancies. HHV-4-like viruses in Macaca fascicularis (Cynomolgus monkeys) have been associated with high lymphoma rates in immunosuppressed monkeys [].; GO: 0019087 transformation of host cell by virus, 0016021 integral to membrane; PDB: 1CZY_E 1ZMS_B.
Probab=25.10 E-value=24 Score=31.13 Aligned_cols=13 Identities=8% Similarity=0.018 Sum_probs=0.0
Q ss_pred HHHHhhccccccC
Q 018373 333 IASSLLFPFETMG 345 (357)
Q Consensus 333 ~~~~~~~~pet~~ 345 (357)
+++.|+|.-|+.+
T Consensus 178 aiLIWlY~H~~~~ 190 (381)
T PF05297_consen 178 AILIWLYVHDQRH 190 (381)
T ss_dssp -------------
T ss_pred HHHHHHHhcCCCC
Confidence 3667777778774
No 299
>PRK10697 DNA-binding transcriptional activator PspC; Provisional
Probab=25.01 E-value=85 Score=23.94 Aligned_cols=30 Identities=7% Similarity=0.170 Sum_probs=14.1
Q ss_pred HHHHhcCCCChHHHHHcCChHHHHHHHHHH
Q 018373 64 LLFYGLAPESPRYLCAKARTVDAHRILEKM 93 (357)
Q Consensus 64 ~~~~~~lpESP~wL~~~g~~~~a~~~l~~l 93 (357)
++..+.+|+-|.-...+...+.+.+.++++
T Consensus 57 i~l~~~lp~~P~~~~~~~~~~s~~~~l~~~ 86 (118)
T PRK10697 57 IILSFALDPMPDNMAFGEQQPSSSELLDEV 86 (118)
T ss_pred HHHHHhccCCcccccccccCCCHHHHHHHH
Confidence 344566888774322222223344444444
No 300
>PF04281 Tom22: Mitochondrial import receptor subunit Tom22 ; InterPro: IPR005683 The mitochondrial protein translocase family, which is responsible for movement of nuclear encoded pre-proteins into mitochondria, is very complex with at least 19 components. These proteins include several chaperone proteins, four proteins of the outer membrane translocase (Tom) import receptor, five proteins of the Tom channel complex, five proteins of the inner membrane translocase (Tim) and three "motor" proteins. This family represents the Tom22 proteins []. The N-terminal region of Tom22 has been shown to have chaperone-like activity, and the C-terminal region faces the intermembrane face []. ; GO: 0006886 intracellular protein transport, 0005741 mitochondrial outer membrane
Probab=22.95 E-value=1.6e+02 Score=23.17 Aligned_cols=23 Identities=22% Similarity=0.261 Sum_probs=17.9
Q ss_pred ccccccCcchhhHHHHHHHHHHH
Q 018373 278 APEIYPTSARTTGFGVASSLGKV 300 (357)
Q Consensus 278 ~~ElfPt~~R~~~~~~~~~~~~l 300 (357)
..|+||...|....+..+...+.
T Consensus 60 Lkdi~P~~~R~~i~~~~~~~~~~ 82 (137)
T PF04281_consen 60 LKDIFPPSVRNWISSTVSTTSSA 82 (137)
T ss_pred HhccCCHHHHHHHHHHHHHHHHH
Confidence 57999999999888777655443
No 301
>PF06779 DUF1228: Protein of unknown function (DUF1228); InterPro: IPR010645 This entry represents the N terminus of several putative bacterial membrane proteins, which may be sugar transporters. Note that many members are hypothetical proteins.
Probab=22.79 E-value=2.9e+02 Score=19.65 Aligned_cols=45 Identities=18% Similarity=-0.065 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHhhHHHHHHHHHH
Q 018373 23 VALSAFWTAGTIFEASLAWVVMTRLNWRWLLAFSSVPSFALLLFY 67 (357)
Q Consensus 23 ~~~~~~~~~G~l~~~~i~~~~~~~~~WR~~~~~~~~p~l~~~~~~ 67 (357)
+++.....+|.+++++.+-........|..+..+.+...+.....
T Consensus 30 g~lasaNy~GYL~GAl~~~~~~~~~~~~~~~~~~l~~~~~~~~~m 74 (85)
T PF06779_consen 30 GWLASANYLGYLVGALLASRLPRHSRPRRLLRAGLLLTVLSTAAM 74 (85)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHH
Confidence 344445555555555444433333456666666666555544443
No 302
>KOG4332 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]
Probab=22.42 E-value=5e+02 Score=23.48 Aligned_cols=139 Identities=14% Similarity=0.055 Sum_probs=0.0
Q ss_pred hhhhHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHH-Hhhhhhhhhhhhcccc----ccCcc
Q 018373 212 AELPGLILSAIIVDKIGRKLSMVLMFVSACIFLLPLVFHQSAVVTTVLLFGVRM-CVTGTITVATIYAPEI----YPTSA 286 (357)
Q Consensus 212 ~~~~~~~~~~~l~d~~GRR~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~El----fPt~~ 286 (357)
..++-..+.+-++||-|||+..+...+.-.++.+.=..++...+.+.=..+... ......-=.|.+.--. ||++-
T Consensus 84 SsmLFGtivgSLaDkqGRKracvtycitYiLsCiTKhSpqYkVLmVGR~LGGiaTsLLFSaFEsWliaEHnekr~FeqqW 163 (454)
T KOG4332|consen 84 SSMLFGTIVGSLADKQGRKRACVTYCITYILSCITKHSPQYKVLMVGRVLGGIATSLLFSAFESWLIAEHNEKRGFEQQW 163 (454)
T ss_pred hHHHHHHHHHHHHhhhccccceeeehHHHHHHHHhhcCCceEEEeehhhhhhHHHHHHHHHHHHHHHHHhhhccCChHhh
Q ss_pred hhhHHHHHHHHHH-HHHhHHHHHHHHHHhh--cchhhHHHHHHHHHHHHHHHHhhccccccCcchhh
Q 018373 287 RTTGFGVASSLGK-VGGMVCPLVAVGLVTS--CHLRLAVILFEVVFVLAIASSLLFPFETMGRELKD 350 (357)
Q Consensus 287 R~~~~~~~~~~~~-l~~~~~p~~~~~l~~~--~~~~~~~~~~~~~~~~~~~~~~~~~pet~~~~l~e 350 (357)
-+...+=+...++ +.++++.....++.+. .|+..||---+.+..++..+..--.-|.-|++-|+
T Consensus 164 ls~TFskA~ffgNglvAiiaGlfgn~lvd~~slGPVAPFdAAacfLaigmAvil~~W~ENygdps~~ 230 (454)
T KOG4332|consen 164 LSVTFSKAVFFGNGLVAIIAGLFGNLLVDTFSLGPVAPFDAAACFLAIGMAVILSSWSENYGDPSEN 230 (454)
T ss_pred hhHHHHHHHHhhccHHHHHHHHHHHHHHHHhccCCCCchHHHHHHHHHHHHHHHhhhhhccCChhhh
No 303
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=21.97 E-value=1.4e+02 Score=15.86 Aligned_cols=20 Identities=15% Similarity=0.029 Sum_probs=14.7
Q ss_pred HHHcCChHHHHHHHHHHHHH
Q 018373 77 LCAKARTVDAHRILEKMAFV 96 (357)
Q Consensus 77 L~~~g~~~~a~~~l~~l~~~ 96 (357)
+..+|+.++|++.+++.-..
T Consensus 11 ~~~~~~~~~A~~~~~~al~l 30 (34)
T PF07719_consen 11 YYQLGNYEEAIEYFEKALEL 30 (34)
T ss_dssp HHHTT-HHHHHHHHHHHHHH
T ss_pred HHHhCCHHHHHHHHHHHHHH
Confidence 34689999999998886554
No 304
>TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors).
Probab=21.53 E-value=2.8e+02 Score=28.19 Aligned_cols=49 Identities=10% Similarity=0.181 Sum_probs=33.9
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHh-------cCcchHHHHHHhhHHHHHHHHH
Q 018373 18 RGRWMVALSAFWTAGTIFEASLAWVVM-------TRLNWRWLLAFSSVPSFALLLF 66 (357)
Q Consensus 18 rg~~~~~~~~~~~~G~l~~~~i~~~~~-------~~~~WR~~~~~~~~p~l~~~~~ 66 (357)
|..+..+...+.++|.+++..+.-.+. ...+|...|++.++..++.++.
T Consensus 122 ~~s~F~~fY~~iNiGSlis~~i~~~l~~~~~~fg~~~~~~~aF~i~~i~m~ia~lv 177 (654)
T TIGR00926 122 RSRFFSFFYFAINAGSLISTIITPILRGDVGCFGCQDCYPLAFGVPAILMILALIV 177 (654)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCcchHHHHHHHHHHHHHHHHH
Confidence 566777888888999888765543332 1347999999988766655443
No 305
>KOG3762 consensus Predicted transporter [General function prediction only]
Probab=20.87 E-value=1.2e+02 Score=29.96 Aligned_cols=31 Identities=16% Similarity=0.214 Sum_probs=22.8
Q ss_pred HHhhhhhHHHHHHHHHHhhchhHHHHHHHHH
Q 018373 209 ASLAELPGLILSAIIVDKIGRKLSMVLMFVS 239 (357)
Q Consensus 209 ~~~~~~~~~~~~~~l~d~~GRR~~~~~~~~~ 239 (357)
.=+.++++.++.++++||+.+|+.++++..+
T Consensus 55 ~P~v~~L~~P~~g~~Adr~r~~r~lllgsl~ 85 (618)
T KOG3762|consen 55 LPLVEFLAAPLWGFLADRYRKRRPLLLGSLL 85 (618)
T ss_pred HHHHHHHhHHHHHHHHHHHHhcCchhHHHHH
Confidence 3456778889999999999876666554443
No 306
>PF04505 Dispanin: Interferon-induced transmembrane protein; InterPro: IPR007593 This family includes the human leukocyte antigen CD225, which is an interferon inducible transmembrane protein, and is associated with interferon induced cell growth suppression [].; GO: 0009607 response to biotic stimulus, 0016021 integral to membrane
Probab=20.68 E-value=3.1e+02 Score=19.25 Aligned_cols=17 Identities=24% Similarity=0.051 Sum_probs=12.4
Q ss_pred HcCChHHHHHHHHHHHH
Q 018373 79 AKARTVDAHRILEKMAF 95 (357)
Q Consensus 79 ~~g~~~~a~~~l~~l~~ 95 (357)
.+||.++|++.=++-++
T Consensus 49 ~~Gd~~~A~~aS~~Ak~ 65 (82)
T PF04505_consen 49 AAGDYEGARRASRKAKK 65 (82)
T ss_pred HCCCHHHHHHHHHHhHH
Confidence 68999999876655544
No 307
>KOG3810 consensus Micronutrient transporters (folate transporter family) [Coenzyme transport and metabolism]
Probab=20.24 E-value=2.8e+02 Score=25.96 Aligned_cols=92 Identities=23% Similarity=0.124 Sum_probs=49.2
Q ss_pred HHHHHhhchhHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhhhhccccccCcchhhHHHHHHHHHHH
Q 018373 221 AIIVDKIGRKLSMVLMFVSACIFLLPLVFHQSAVVTTVLLFGVRMCVTGTITVATIYAPEIYPTSARTTGFGVASSLGKV 300 (357)
Q Consensus 221 ~~l~d~~GRR~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ElfPt~~R~~~~~~~~~~~~l 300 (357)
-.+.|...-|+.++.-.+........+.+.+.....-++-+..+.. .+.-...|.|.=+..|.+.+-++.|.|.+..-.
T Consensus 63 FlLTD~lrYKPvivlq~ls~v~~w~~lv~g~sV~~mQvlE~FyG~~-tAaEIAYysYIYs~Vd~~~Yqrvt~y~RaA~L~ 141 (433)
T KOG3810|consen 63 FLLTDYLRYKPVVVLQALSGVPVWIMLVFGPSVKAMQVLEFFYGPA-TAAEIAYYSYIYSKVDPEMYKRVTGYCRAAFLV 141 (433)
T ss_pred HHHhhhhhcceeeeeeccchhHHHHHHHhcCCchheeeehhhcChH-HHHHHhhhheeeeecCHHHHHHHHHHhHHHHHH
Confidence 3577888878877655443333333333333221110111100000 111224677888889999999999999887655
Q ss_pred HHhHHHHHHHHHH
Q 018373 301 GGMVCPLVAVGLV 313 (357)
Q Consensus 301 ~~~~~p~~~~~l~ 313 (357)
|-+.+..+...+.
T Consensus 142 g~~~g~vlaQlLv 154 (433)
T KOG3810|consen 142 GKFVGSVLAQLLV 154 (433)
T ss_pred HhHHHhHHHHHHh
Confidence 5555544444333
No 308
>PF04024 PspC: PspC domain; InterPro: IPR007168 This domain is found in Phage shock protein C (PspC) that is thought to be a transcriptional regulator. The presumed domain is 60 amino acid residues in length.
Probab=20.07 E-value=1e+02 Score=20.31 Aligned_cols=30 Identities=20% Similarity=0.272 Sum_probs=16.5
Q ss_pred cCcchHHHHHHhhHHH--HHH--HHHHhcCCCCh
Q 018373 45 TRLNWRWLLAFSSVPS--FAL--LLFYGLAPESP 74 (357)
Q Consensus 45 ~~~~WR~~~~~~~~p~--l~~--~~~~~~lpESP 74 (357)
+.+-+|..|.+..+.. .+. ++....+|+.|
T Consensus 27 d~~~vRl~~v~l~~~~~~~~l~Y~~~w~~lP~~~ 60 (61)
T PF04024_consen 27 DPTLVRLIFVVLTFFTGGGILLYLILWLLLPKEP 60 (61)
T ss_pred CHHHHHHHHHHHHHHHhHHHHHHHHHHHHcCCCC
Confidence 3455777777766532 111 33445677766
No 309
>PF10183 ESSS: ESSS subunit of NADH:ubiquinone oxidoreductase (complex I) ; InterPro: IPR019329 NADH:ubiquinone oxidoreductase (complex I) (1.6.5.3 from EC) is a respiratory-chain enzyme that catalyses the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane (NADH + ubiquinone = NAD+ + ubiquinol) []. Complex I is a major source of reactive oxygen species (ROS) that are predominantly formed by electron transfer from FMNH(2). Complex I is found in bacteria, cyanobacteria (as a NADH-plastoquinone oxidoreductase), archaea [], mitochondira, and in the hydrogenosome, a mitochondria-derived organelle. In general, the bacterial complex consists of 14 different subunits, while the mitochondrial complex contains homologues to these subunits in addition to approximately 31 additional proteins []. Mitochondrial complex I, which is located in the inner mitochondrial membrane, is the largest multimeric respiratory enzyme in the mitochondria, consisting of more than 40 subunits, one FMN co-factor and eight FeS clusters []. The assembly of mitochondrial complex I is an intricate process that requires the cooperation of the nuclear and mitochondrial genomes [, ]. Mitochondrial complex I can cycle between active and deactive forms that can be distinguished by the reactivity towards divalent cations and thiol-reactive agents. All redox prosthetic groups reside in the peripheral arm of the L-shaped structure. The NADH oxidation domain harbouring the FMN cofactor is connected via a chain of iron-sulphur clusters to the ubiquinone reduction site that is located in a large pocket formed by the PSST and 49kDa subunits of complex I []. This entry represents the ESSS subunit from mitochondrial NADH:ubiquinone oxidoreductase (complex I). It carries mitochondrial import sequences [].
Probab=20.05 E-value=1.7e+02 Score=21.65 Aligned_cols=35 Identities=9% Similarity=-0.086 Sum_probs=18.3
Q ss_pred hHHHHHHHHHHHHHHHHhhccccccCcc--hhhhHhh
Q 018373 320 LAVILFEVVFVLAIASSLLFPFETMGRE--LKDTVDA 354 (357)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~~~pet~~~~--l~e~~~~ 354 (357)
.++++...++++...+.+.+.|||.-++ .+|....
T Consensus 61 ~~~f~~~~~~~v~~~~~~~y~PD~~i~~WA~rEA~~r 97 (105)
T PF10183_consen 61 LPFFFGFSGSLVFGGVFLAYKPDTSIQTWARREAYRR 97 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 3444333333444445555678998765 4455444
Done!