Query 018373
Match_columns 357
No_of_seqs 120 out of 1663
Neff 9.8
Searched_HMMs 29240
Date Mon Mar 25 14:14:46 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018373.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/018373hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4gc0_A D-xylose-proton symport 100.0 9.4E-37 3.2E-41 292.8 29.8 296 19-352 161-475 (491)
2 1pw4_A Glycerol-3-phosphate tr 99.8 5.8E-19 2E-23 166.8 21.2 286 19-354 154-447 (451)
3 3o7q_A L-fucose-proton symport 99.8 3.3E-16 1.1E-20 147.3 26.9 123 207-332 302-425 (438)
4 2cfq_A Lactose permease; trans 99.8 5.8E-18 2E-22 159.0 13.7 141 208-348 267-408 (417)
5 4aps_A DI-OR tripeptide H+ sym 99.7 2.8E-16 9.5E-21 150.3 15.6 138 209-347 328-479 (491)
6 2gfp_A EMRD, multidrug resista 99.5 1.8E-14 6.1E-19 132.8 8.4 226 19-315 123-352 (375)
7 1pw4_A Glycerol-3-phosphate tr 99.4 1.3E-11 4.3E-16 116.2 18.7 139 207-345 69-212 (451)
8 2xut_A Proton/peptide symporte 99.3 3.8E-12 1.3E-16 122.6 10.0 86 269-354 421-517 (524)
9 3o7q_A L-fucose-proton symport 99.3 2.4E-10 8.2E-15 107.1 20.2 107 207-313 68-177 (438)
10 4aps_A DI-OR tripeptide H+ sym 99.2 5.9E-10 2E-14 106.2 18.1 133 207-339 61-196 (491)
11 2gfp_A EMRD, multidrug resista 99.1 2.6E-10 9E-15 104.7 12.0 140 207-346 42-181 (375)
12 2xut_A Proton/peptide symporte 99.1 2.6E-09 9E-14 102.6 17.2 135 207-341 61-200 (524)
13 4gc0_A D-xylose-proton symport 98.8 1.5E-07 5.1E-12 89.4 17.4 103 209-311 64-184 (491)
14 2cfq_A Lactose permease; trans 97.7 1E-05 3.5E-10 75.3 2.7 136 207-343 50-191 (417)
15 2g9p_A Antimicrobial peptide l 37.1 24 0.00082 17.3 1.9 13 220-232 3-15 (26)
No 1
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=100.00 E-value=9.4e-37 Score=292.78 Aligned_cols=296 Identities=17% Similarity=0.222 Sum_probs=186.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHh--------cCcchHHHHHHhhHHHHHHHHHHhcCCCChHHHHHcCChHHHHHHH
Q 018373 19 GRWMVALSAFWTAGTIFEASLAWVVM--------TRLNWRWLLAFSSVPSFALLLFYGLAPESPRYLCAKARTVDAHRIL 90 (357)
Q Consensus 19 g~~~~~~~~~~~~G~l~~~~i~~~~~--------~~~~WR~~~~~~~~p~l~~~~~~~~lpESP~wL~~~g~~~~a~~~l 90 (357)
|+..++.+.++..|.+++..+++... ..+.||+++.++.+|+++.++.++++|||||||..|+|.||+++.+
T Consensus 161 g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~peSp~~L~~~~~~~~a~~~l 240 (491)
T 4gc0_A 161 GKLVSFNQFAIIFGQLLVYCVNYFIARSGDASWLNTDGWRYMFASECIPALLFLMLLYTVPESPRWLMSRGKQEQAEGIL 240 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTTTTTTHHHHHHHTTHHHHHHHHHHGGGSCCCHHHHHHTTCHHHHHHHH
T ss_pred hhhHHhhhhhhhhhhhhhhhcchhhccccccccccchhhHHHhhhhhhhhhhhhhhhhcCCCChHHHHHcCchhHHHHhH
Confidence 44445555666666666665554432 2357999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCCCCCCcccchhhhhhhhhhhhhhcchhhhhhhhhhhhhccchhhhhhhcchhhHHHHHHHHHHHHHHHHHH
Q 018373 91 EKMAFVNQTKLPPGILVSDKAIKENEESNLLRDTHMLSMTRKITDKLKSGFSSFFMLFSRKLIRTTLLLWVLFFANVFSY 170 (357)
Q Consensus 91 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 170 (357)
+|.++.+.. +++..+.+.. .. .++ +......++..+ +..+......+.+...+
T Consensus 241 ~~~~~~~~~-----------~~~~~~~~~~-----------~~--~~~-~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~ 293 (491)
T 4gc0_A 241 RKIMGNTLA-----------TQAVQEIKHS-----------LD--HGR-KTGGRLLMFGVG--VIVIGVMLSIFQQFVGI 293 (491)
T ss_dssp HHHHHHHHH-----------HHHHHHHHHH-----------HH--HHH-HHTTHHHHSCCT--HHHHHHHHHHHHHHTCH
T ss_pred HHhcCCchh-----------HHHHHHHHHH-----------HH--hhh-hhhhHHHHhccc--HHHHHHHHHHHHHHhhh
Confidence 988764210 0000000000 00 000 000111122211 11111222222222222
Q ss_pred HHHHHHhhhhcCCCCCCCcccccCCCCCchhhHHHHHHHHhhhhhHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHh-
Q 018373 171 YGAVLLTSKLSSGDNKCGSKVLHADKSKDNSLYVDVFIASLAELPGLILSAIIVDKIGRKLSMVLMFVSACIFLLPLVF- 249 (357)
Q Consensus 171 y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~d~~GRR~~~~~~~~~~~i~~~~~~~- 249 (357)
+.+..+.+.+.... ............+.++..+++.+++++++||+|||+.++.+..++.+.++.+..
T Consensus 294 ~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~Grr~~~~~~~~~~~~~~~~l~~~ 362 (491)
T 4gc0_A 294 NVVLYYAPEVFKTL-----------GASTDIALLQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTA 362 (491)
T ss_dssp HHHHHHHHHHHHHS-----------SCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHhcchHHHHhc-----------CCCccchhhHHHHHHHHHHHHHHHHHHHHHhhcCcchhccchHHHHHHHHHHHHH
Confidence 33333333322110 111122233445667888999999999999999999998887776665554432
Q ss_pred --hh-hhHHHHHHH-HHHHHHhhhhhhhhhhhccccccCcchhhHHHHHHHHHHHHHhHHHHHHHHHHhh------cchh
Q 018373 250 --HQ-SAVVTTVLL-FGVRMCVTGTITVATIYAPEIYPTSARTTGFGVASSLGKVGGMVCPLVAVGLVTS------CHLR 319 (357)
Q Consensus 250 --~~-~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ElfPt~~R~~~~~~~~~~~~l~~~~~p~~~~~l~~~------~~~~ 319 (357)
.. ......... +....+..+..++.|.+.+|+||+++|+++.|++++++|+++++++++++.+.+. .+..
T Consensus 363 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~fPt~~R~~~~g~~~~~~~~~~~i~~~~~p~l~~~~~~~~~~~~~ 442 (491)
T 4gc0_A 363 FYTQAPGIVALLSMLFYVAAFAMSWGPVCWVLLSEIFPNAIRGKALAIAVAAQWLANYFVSWTFPMMDKNSWLVAHFHNG 442 (491)
T ss_dssp HHTTCCHHHHHHHHHHHHHHHHTTTTHHHHHHHHHSSCTTTHHHHHHHHHHHHHHHHHHHHTHHHHHCHHHHHHHHHTTC
T ss_pred HhcccchHHHHHHHHHHHHHHHhHHHHHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Confidence 11 122211211 1122233344568899999999999999999999999999999998887765432 2234
Q ss_pred hHHHHHHHHHHHHHHHHhhccccccCcchhhhH
Q 018373 320 LAVILFEVVFVLAIASSLLFPFETMGRELKDTV 352 (357)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~~~pet~~~~l~e~~ 352 (357)
.++++++++++++.+++++++||||||++||+-
T Consensus 443 ~~~~i~~~~~~~~~i~~~~~~PETkg~tLeei~ 475 (491)
T 4gc0_A 443 FSYWIYGCMGVLAALFMWKFVPETKGKTLEELE 475 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCCCCTTCCHHHHG
T ss_pred HHHHHHHHHHHHHHHHHHheecCCCCCCHHHHH
Confidence 567889999999999999999999999999853
No 2
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=99.82 E-value=5.8e-19 Score=166.77 Aligned_cols=286 Identities=14% Similarity=0.157 Sum_probs=159.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhcCcc-hHHHHHHhhHHHHHH-HHHHhcCCCChHHHHHcCChHHHHHHHHHHHHH
Q 018373 19 GRWMVALSAFWTAGTIFEASLAWVVMTRLN-WRWLLAFSSVPSFAL-LLFYGLAPESPRYLCAKARTVDAHRILEKMAFV 96 (357)
Q Consensus 19 g~~~~~~~~~~~~G~l~~~~i~~~~~~~~~-WR~~~~~~~~p~l~~-~~~~~~lpESP~wL~~~g~~~~a~~~l~~l~~~ 96 (357)
++..+..+.+..+|.++++.++..+.+..+ ||+.|.+.+++.++. ++..+++||+|++...+.+. +.
T Consensus 154 ~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~---------- 222 (451)
T 1pw4_A 154 GGIVSVWNCAHNVGGGIPPLLFLLGMAWFNDWHAALYMPAFCAILVALFAFAMMRDTPQSCGLPPIE-EY---------- 222 (451)
T ss_dssp HHHHHHHHHHHHHHHTSHHHHHHHHHHHTCCSTTCTHHHHHHHHHHHHHHHHHCCCSSTTTCCCSCT-TT----------
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhhccCCHhhcCCCChh-hh----------
Confidence 666677777777777776666544444567 999999888776654 45567899999753111100 00
Q ss_pred cCCCCCCCcccchhhhhhhhhhhhhhcchhhhhhhhhhhhhccchhhhhhhcchhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 018373 97 NQTKLPPGILVSDKAIKENEESNLLRDTHMLSMTRKITDKLKSGFSSFFMLFSRKLIRTTLLLWVLFFANVFSYYGAVLL 176 (357)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~y~~~~~ 176 (357)
+ +. .+.+.++ + + +++........+.+++++. .....+..+.....+++...+
T Consensus 223 --~-----~~---~~~~~~~--~------------~-~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~ 274 (451)
T 1pw4_A 223 --K-----ND---YPDDYNE--K------------A-EQELTAKQIFMQYVLPNKL---LWYIAIANVFVYLLRYGILDW 274 (451)
T ss_dssp --C-----CC-------------------------------CCTHHHHHHTSSCHH---HHHHHHHHHHHHHHHHHHHHH
T ss_pred --c-----cc---ccccchh--h------------h-hcccccccchHHHHHcCHH---HHHHHHHHHHHHHHHHHHHHH
Confidence 0 00 0000000 0 0 0000000001233343322 222222333333444555555
Q ss_pred hhhhcCCCCCCCcccccCCCCCchhhHHHHHHHHhhhhhHHHHHHHHHHhh--chhHHHHHHHHHHH-HHHHHHHhhh--
Q 018373 177 TSKLSSGDNKCGSKVLHADKSKDNSLYVDVFIASLAELPGLILSAIIVDKI--GRKLSMVLMFVSAC-IFLLPLVFHQ-- 251 (357)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~d~~--GRR~~~~~~~~~~~-i~~~~~~~~~-- 251 (357)
.|.+..+. ...+....-....+..++.+++.++.+++.||+ |||+.+..+..+.. +.+..+....
T Consensus 275 ~~~~~~~~----------~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 344 (451)
T 1pw4_A 275 SPTYLKEV----------KHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWMNPAG 344 (451)
T ss_dssp HHHHBTTB----------SCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHHTTSCCTT
T ss_pred HHHHHHHh----------cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHhccc
Confidence 55443211 011111111223455677889999999999999 99998877665544 3333333321
Q ss_pred hhHHHHHHHHHHHHHhhhhhhhhhhhccccccCcchhhHHHHHHHHHHH-HHhHHHHHHHHHHhhcchhhHHHHHHHHHH
Q 018373 252 SAVVTTVLLFGVRMCVTGTITVATIYAPEIYPTSARTTGFGVASSLGKV-GGMVCPLVAVGLVTSCHLRLAVILFEVVFV 330 (357)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ElfPt~~R~~~~~~~~~~~~l-~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~ 330 (357)
+........+...++..+..+..+.+..|.+|++.|+++.|+.+.+..+ ++.++|.+...+.+..+....+++.+++.+
T Consensus 345 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~ 424 (451)
T 1pw4_A 345 NPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSI 424 (451)
T ss_dssp CHHHHHHHHHHHHHHHTHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHhchHHHHHHHHHHHhchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 2222222223333333445566778999999999999999999999999 999999999988887666666777777777
Q ss_pred HHHHHHhhccccccCcchhhhHhh
Q 018373 331 LAIASSLLFPFETMGRELKDTVDA 354 (357)
Q Consensus 331 ~~~~~~~~~~pet~~~~l~e~~~~ 354 (357)
++.++.++.. +.+.++.++..++
T Consensus 425 ~~~~~~~~~~-~~~~~~~~~~~~~ 447 (451)
T 1pw4_A 425 LAVILLIVVM-IGEKRRHEQLLQE 447 (451)
T ss_dssp HHHHHHHHHH-HHHHHHHHGGGGG
T ss_pred HHHHHHHHHH-hhhhhhhhHHHHH
Confidence 7766665543 3333333444444
No 3
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=99.76 E-value=3.3e-16 Score=147.30 Aligned_cols=123 Identities=10% Similarity=0.035 Sum_probs=86.7
Q ss_pred HHHHhhhhhHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhhhhccccccCcc
Q 018373 207 FIASLAELPGLILSAIIVDKIGRKLSMVLMFVSACIFLLPLVFHQSAVVTTVLLFGVRMCVTGTITVATIYAPEIYPTSA 286 (357)
Q Consensus 207 ~i~~~~~~~~~~~~~~l~d~~GRR~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ElfPt~~ 286 (357)
.+..++.+++.++.+++.||+|||+.+..+.+++.+..+......+... ....+...++....++..+.+..|.+|++
T Consensus 302 ~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~~~~~~~~~~~~~~- 379 (438)
T 3o7q_A 302 TGTMVCFFIGRFTGTWLISRFAPHKVLAAYALIAMALCLISAFAGGHVG-LIALTLCSAFMSIQYPTIFSLGIKNLGQD- 379 (438)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCCHHHH-HHHHHHHHHHHTTHHHHHHHHHHSSCGGG-
T ss_pred HHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHcCCcHH-HHHHHHHHHHHHHHHHHHHHHHHhhcccc-
Confidence 4456778889999999999999999998887776666554444333222 22222333344445677888899999988
Q ss_pred hhhHHHHHHHHHHHHHhHHHHHHHHHHhhcc-hhhHHHHHHHHHHHH
Q 018373 287 RTTGFGVASSLGKVGGMVCPLVAVGLVTSCH-LRLAVILFEVVFVLA 332 (357)
Q Consensus 287 R~~~~~~~~~~~~l~~~~~p~~~~~l~~~~~-~~~~~~~~~~~~~~~ 332 (357)
|+++.++.. .+.+++.++|.+...+.+..+ ....+++.+++.++.
T Consensus 380 ~~~~~~~~~-~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~ 425 (438)
T 3o7q_A 380 TKYGSSFIV-MTIIGGGIVTPVMGFVSDAAGNIPTAELIPALCFAVI 425 (438)
T ss_dssp HHHHHHHHH-HTTHHHHHHHHHHHHHHHHHTSSGGGGHHHHHHHHHH
T ss_pred ccchhhHHH-HHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHH
Confidence 999999887 778999999999998888766 455555544443333
No 4
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Probab=99.75 E-value=5.8e-18 Score=159.02 Aligned_cols=141 Identities=14% Similarity=0.104 Sum_probs=97.0
Q ss_pred HHHhhhhhHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhhhhccccccCcch
Q 018373 208 IASLAELPGLILSAIIVDKIGRKLSMVLMFVSACIFLLPLVFHQSAVVTTVLLFGVRMCVTGTITVATIYAPEIYPTSAR 287 (357)
Q Consensus 208 i~~~~~~~~~~~~~~l~d~~GRR~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ElfPt~~R 287 (357)
+..++.+++.++.+++.||+|||+.+..+..+..+....+....+........+...+......+..+.+.+|.+|++.|
T Consensus 267 ~~~~~~~~~~~~~g~l~dr~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~~ 346 (417)
T 2cfq_A 267 MGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFATSALEVVILKTLHMFEVPFLLVGCFKYITSQFEVRFS 346 (417)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTTCCSHHHHHHHTTHHHHHHHHHHHHHHHHHHHHSCHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHH
Confidence 44566778889999999999999998877666655444433322222211111111111112233457899999999999
Q ss_pred hhHHHHH-HHHHHHHHhHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHHhhccccccCcch
Q 018373 288 TTGFGVA-SSLGKVGGMVCPLVAVGLVTSCHLRLAVILFEVVFVLAIASSLLFPFETMGREL 348 (357)
Q Consensus 288 ~~~~~~~-~~~~~l~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~pet~~~~l 348 (357)
+++.++. +..++++++++|.+.+.+.+..+....+.+.+++++++.++.++..||++.-++
T Consensus 347 g~~~g~~~~~~~~lg~~~gp~l~G~l~~~~g~~~~f~~~~~~~l~~~~~~~~~~~~~~~~~~ 408 (417)
T 2cfq_A 347 ATIYLVCFCFFKQLAMIFMSVLAGNMYESIGFQGAYLVLGLVALGFTLISVFTLSGPGPLSL 408 (417)
T ss_dssp HHHHHHHHTTTHHHHHHHHTHHHHTHHHHSHHHHHHHHHHHHHHHHHHHHTTSSCCSCTTCS
T ss_pred HHHHHHHHHHHHhHHHHHhhhhHHHHHHhcCcHHHHHHHHHHHHHHHHHHHhhhcCCCchHH
Confidence 9999996 667789999999999888776554556677777778887777777888776554
No 5
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=99.69 E-value=2.8e-16 Score=150.27 Aligned_cols=138 Identities=9% Similarity=-0.077 Sum_probs=84.1
Q ss_pred HHhhhhhHHHHHHHHHHhhchhHHHH-----HHHHHHHHHHHHHHhhh---------hhHHHHHHHHHHHHHhhhhhhhh
Q 018373 209 ASLAELPGLILSAIIVDKIGRKLSMV-----LMFVSACIFLLPLVFHQ---------SAVVTTVLLFGVRMCVTGTITVA 274 (357)
Q Consensus 209 ~~~~~~~~~~~~~~l~d~~GRR~~~~-----~~~~~~~i~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~ 274 (357)
..+..+++..+.+++.||+|||+... .+.+++.+....+.... +........+...+......+..
T Consensus 328 ~~~~~~~~~~~~~~l~~r~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~ 407 (491)
T 4aps_A 328 NPLFIMLYTPFFAWLWTAWKKNQPSSPTKFAVGLMFAGLSFLLMAIPGALYGTSGKVSPLWLVGSWALVILGEMLISPVG 407 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHTTTC---CHHHHHHHHHHHHHHHTTTHHHHHHCCCCTTCCTHHHHHHHHHHHHHHHTTTTHH
T ss_pred chHHHHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHHHHHHHHHhcCCCCCccHHHHHHHHHHHHHHHHHHhHHH
Confidence 44556677788899999999986543 34443333333222210 11121222222222222335677
Q ss_pred hhhccccccCcchhhHHHHHHHHHHHHHhHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHHhhccccccCcc
Q 018373 275 TIYAPEIYPTSARTTGFGVASSLGKVGGMVCPLVAVGLVTSCHLRLAVILFEVVFVLAIASSLLFPFETMGRE 347 (357)
Q Consensus 275 ~~~~~ElfPt~~R~~~~~~~~~~~~l~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~pet~~~~ 347 (357)
+.+..|.+|++.|+++.|+.+....+++.++|.+.+.+.+ .+....+.+++++++++.++.+++.|+++++.
T Consensus 408 ~~~~~~~~p~~~~g~~~g~~~~~~~~g~~i~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 479 (491)
T 4aps_A 408 LSVTTKLAPKAFNSQMMSMWFLSSSVGSALNAQLVTLYNA-KSEVAYFSYFGLGSVVLGIVLVFLSKRIQGLM 479 (491)
T ss_dssp HHHHHHHTTTTCSSSSTHHHHHHHHHHHHHHHHHGGGGGG-SSTTHHHHHTHHHHHHHHHHHHHC--------
T ss_pred HHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8899999999999999999999999999999988775543 34445677778888888888888888877654
No 6
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=99.52 E-value=1.8e-14 Score=132.80 Aligned_cols=226 Identities=13% Similarity=0.060 Sum_probs=117.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHhhHHHHHHHH-HHhcCCCChHHHHHcCChHHHHHHHHHHHHHc
Q 018373 19 GRWMVALSAFWTAGTIFEASLAWVVMTRLNWRWLLAFSSVPSFALLL-FYGLAPESPRYLCAKARTVDAHRILEKMAFVN 97 (357)
Q Consensus 19 g~~~~~~~~~~~~G~l~~~~i~~~~~~~~~WR~~~~~~~~p~l~~~~-~~~~lpESP~wL~~~g~~~~a~~~l~~l~~~~ 97 (357)
++..+..+.+..+|..++..++..+.+..+||..+.+..+..++..+ ..+++||+|+.. +++
T Consensus 123 ~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~-------------- 185 (375)
T 2gfp_A 123 RHANSLLNMGILVSPLLAPLIGGLLDTMWNWRACYLFLLVLCAGVTFSMARWMPETRPVD---APR-------------- 185 (375)
T ss_dssp CSHHHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHHHCCCCCSSCCCSTTT---CCC--------------
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHCcccCCCC---ccc--------------
Confidence 66777888888888888887776665567999999988877776655 667789987531 000
Q ss_pred CCCCCCCcccchhhhhhhhhhhhhhcchhhhhhhhhhhhhccchhhhhhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHh
Q 018373 98 QTKLPPGILVSDKAIKENEESNLLRDTHMLSMTRKITDKLKSGFSSFFMLFSRKLIRTTLLLWVLFFANVFSYYGAVLLT 177 (357)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~ 177 (357)
++ . ...++++++++..+.. ....+.....+++...+.
T Consensus 186 -~~---------------~------------------------~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~ 222 (375)
T 2gfp_A 186 -TR---------------L------------------------LTSYKTLFGNSGFNCY---LLMLIGGLAGIAAFEACS 222 (375)
T ss_dssp -CC---------------T------------------------TTCSTHHHHHHHHHHH---HHHHHHHHHHHHHHHHHC
T ss_pred -cc---------------H------------------------HHHHHHHhcCcchHHH---HHHHHHHHHHHHHHHHHH
Confidence 00 0 0011222322222211 122222223333333333
Q ss_pred hhhcCCCCCCCcccccCCCCCchhhHHHHHHHHhhhhhHHHHHHHHHHhhchhHHHHHHH-HHHHHHHHHHHh-hh-hhH
Q 018373 178 SKLSSGDNKCGSKVLHADKSKDNSLYVDVFIASLAELPGLILSAIIVDKIGRKLSMVLMF-VSACIFLLPLVF-HQ-SAV 254 (357)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~d~~GRR~~~~~~~-~~~~i~~~~~~~-~~-~~~ 254 (357)
|.+..+. . ..+....-.......++.+++.++.+++.||.|||....... ...+........ .. +..
T Consensus 223 ~~~~~~~-------~---g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 292 (375)
T 2gfp_A 223 GVLMGAV-------L---GLSSMTVSILFILPIPAAFFGAWFAGRPNKRFSTLMWQSVICCLLAGLLMWIPDWFGVMNVW 292 (375)
T ss_dssp SCSSHHH-------H---HHHHHHHHHHHHTHHHHHHHHHHHHHTTTTHHHHHHHHHHHHHHHTSSSSSHHHHHHHHHHH
T ss_pred HHHHHHH-------h---CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccHH
Confidence 3221100 0 000011011122334556666777777777777632221111 111111111111 11 221
Q ss_pred HHHHHHHHHHHHhhhhhhhhhhhccccccCcchhhHHHHHHHHHHHHHhHHHHHHHHHHhh
Q 018373 255 VTTVLLFGVRMCVTGTITVATIYAPEIYPTSARTTGFGVASSLGKVGGMVCPLVAVGLVTS 315 (357)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~~~~~~~~ElfPt~~R~~~~~~~~~~~~l~~~~~p~~~~~l~~~ 315 (357)
......+...+......+..+.+..|.+| +.|+++.|+.+....+++.++|.+...+.+.
T Consensus 293 ~~~~~~~l~g~~~~~~~~~~~~~~~~~~p-~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~ 352 (375)
T 2gfp_A 293 TLLVPAALFFFGAGMLFPLATSGAMEPFP-FLAGTAGALVGGLQNIGSGVLASLSAMLPQT 352 (375)
T ss_dssp HHHHHHHHHHHHHHHTSSTTHHHHHTHHH-HHHHHHHHHHHHHHHHHHHCCSTTCTHHHHH
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHhCC-cccchHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 11122222223333345677888999999 8999999999999999999999887766554
No 7
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=99.40 E-value=1.3e-11 Score=116.23 Aligned_cols=139 Identities=16% Similarity=0.053 Sum_probs=102.3
Q ss_pred HHHHhhhhhHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHh----hhhhHHHHHHHHHHHHHhhhhhhhhhhhccccc
Q 018373 207 FIASLAELPGLILSAIIVDKIGRKLSMVLMFVSACIFLLPLVF----HQSAVVTTVLLFGVRMCVTGTITVATIYAPEIY 282 (357)
Q Consensus 207 ~i~~~~~~~~~~~~~~l~d~~GRR~~~~~~~~~~~i~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Elf 282 (357)
.+..++..++.++.|++.||+|||+.++.+.++.++..+.... ..+.....+..+...+......+....+.+|.+
T Consensus 69 ~~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~ 148 (451)
T 1pw4_A 69 SGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWW 148 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCHHHHSSSSHHHHHHHHHHHHHHHTHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHhHHHHHHhcCchHHHHHHHHHHHHHHHHHHhhhhccccHHHHHHHHHHHHHHhhhccchHHHHHHHHC
Confidence 3456777888999999999999999998888777666555444 322222222222233333334567788999999
Q ss_pred cCcchhhHHHHHHHHHHHHHhHHHHHHHHHHhhcc-hhhHHHHHHHHHHHHHHHHhhccccccC
Q 018373 283 PTSARTTGFGVASSLGKVGGMVCPLVAVGLVTSCH-LRLAVILFEVVFVLAIASSLLFPFETMG 345 (357)
Q Consensus 283 Pt~~R~~~~~~~~~~~~l~~~~~p~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~pet~~ 345 (357)
|.+.|+++.|+.+....++..++|.+...+.+..+ +..++++.++++++..++.++..||++.
T Consensus 149 ~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~w~~~f~~~~~~~~~~~~~~~~~~~~~~~ 212 (451)
T 1pw4_A 149 SQKERGGIVSVWNCAHNVGGGIPPLLFLLGMAWFNDWHAALYMPAFCAILVALFAFAMMRDTPQ 212 (451)
T ss_dssp TTTHHHHHHHHHHHHHHHHHTSHHHHHHHHHHHTCCSTTCTHHHHHHHHHHHHHHHHHCCCSST
T ss_pred CchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhhccCCHh
Confidence 99999999999999999999999999887777666 6667777777777777777676777654
No 8
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=99.32 E-value=3.8e-12 Score=122.55 Aligned_cols=86 Identities=13% Similarity=0.085 Sum_probs=53.4
Q ss_pred hhhhhhhhhccccccCcchhhHHHHHHHHHHHHHhHHHHHHHHHHhhc----------ch-hhHHHHHHHHHHHHHHHHh
Q 018373 269 GTITVATIYAPEIYPTSARTTGFGVASSLGKVGGMVCPLVAVGLVTSC----------HL-RLAVILFEVVFVLAIASSL 337 (357)
Q Consensus 269 ~~~~~~~~~~~ElfPt~~R~~~~~~~~~~~~l~~~~~p~~~~~l~~~~----------~~-~~~~~~~~~~~~~~~~~~~ 337 (357)
...+..+.+.+|.+|++.|++++|+.+.+..+++.++|.+.+.+.+.. +. ...+++++++++++.++.+
T Consensus 421 ~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 500 (524)
T 2xut_A 421 LVSATGLEFAYSQAPKAMKGTIMSFWTLSVTVGNLWVLLANVSVKSPTVTEQIVQTGMSVTAFQMFFFAGFAILAAIVFA 500 (524)
T ss_dssp HHHHHHTTTHHHHCCTTCCTTTHHHHGGGHHHHHHHHHHHHHHTTSCHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhCcHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccccccccccHHHHHHHHHHHHHHHHH
Confidence 345677889999999999999999999999999999999988665421 11 1225667777777777777
Q ss_pred hccccccCcchhhhHhh
Q 018373 338 LFPFETMGRELKDTVDA 354 (357)
Q Consensus 338 ~~~pet~~~~l~e~~~~ 354 (357)
++.|++++++.++..++
T Consensus 501 ~~~~~~~~~~~~~~~~~ 517 (524)
T 2xut_A 501 LYARSYQMQDHYRQATG 517 (524)
T ss_dssp -----------------
T ss_pred HHHHHhccchhhhhhhc
Confidence 78888888776655443
No 9
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=99.29 E-value=2.4e-10 Score=107.07 Aligned_cols=107 Identities=13% Similarity=0.095 Sum_probs=78.8
Q ss_pred HHHHhhhhhHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHH---HhhhhhHHHHHHHHHHHHHhhhhhhhhhhhcccccc
Q 018373 207 FIASLAELPGLILSAIIVDKIGRKLSMVLMFVSACIFLLPL---VFHQSAVVTTVLLFGVRMCVTGTITVATIYAPEIYP 283 (357)
Q Consensus 207 ~i~~~~~~~~~~~~~~l~d~~GRR~~~~~~~~~~~i~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ElfP 283 (357)
....++..++.++.|.+.||+|||+.++.+.++.++..+.. ....+.....+..+...+......+....+.+|.+|
T Consensus 68 ~~~~~~~~i~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~ 147 (438)
T 3o7q_A 68 SAFYFGYFIIPIPAGILMKKLSYKAGIITGLFLYALGAALFWPAAEIMNYTLFLVGLFIIAAGLGCLETAANPFVTVLGP 147 (438)
T ss_dssp HHHHHHHHTTHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSC
T ss_pred HHHHHHHHHHHHhHHHHHHHhcchHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHhhHHHhhhhHHHHHHHHcC
Confidence 44566778889999999999999999998887776655544 222222222222222333333445677889999999
Q ss_pred CcchhhHHHHHHHHHHHHHhHHHHHHHHHH
Q 018373 284 TSARTTGFGVASSLGKVGGMVCPLVAVGLV 313 (357)
Q Consensus 284 t~~R~~~~~~~~~~~~l~~~~~p~~~~~l~ 313 (357)
.+.|+.+.++.+....++..++|.+...+.
T Consensus 148 ~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~ 177 (438)
T 3o7q_A 148 ESSGHFRLNLAQTFNSFGAIIAVVFGQSLI 177 (438)
T ss_dssp STTHHHHHHHHHHHHHHHHHHHHHHTTHHH
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999998887776
No 10
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=99.20 E-value=5.9e-10 Score=106.22 Aligned_cols=133 Identities=12% Similarity=0.088 Sum_probs=93.9
Q ss_pred HHHHhhhhhHHHHHHHHHHh-hchhHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhhhhccccccCc
Q 018373 207 FIASLAELPGLILSAIIVDK-IGRKLSMVLMFVSACIFLLPLVFHQSAVVTTVLLFGVRMCVTGTITVATIYAPEIYPTS 285 (357)
Q Consensus 207 ~i~~~~~~~~~~~~~~l~d~-~GRR~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ElfPt~ 285 (357)
.+..++..++.++.|++.|| +|||+.+..+.++..+..+.....++.....+..+...+......+....+.+|.+|.+
T Consensus 61 ~~~~~~~~~~~~~~g~l~dr~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~ 140 (491)
T 4aps_A 61 AIYASMVYLSGTIGGFVADRIIGARPAVFWGGVLIMLGHIVLALPFGASALFGSIILIIIGTGFLKPNVSTLVGTLYDEH 140 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHSCCSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSC
T ss_pred HHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhccchHHHHHHHHcCcc
Confidence 44567778899999999999 89999999888777666655554433322222222223333344567888999999998
Q ss_pred c--hhhHHHHHHHHHHHHHhHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHHhhc
Q 018373 286 A--RTTGFGVASSLGKVGGMVCPLVAVGLVTSCHLRLAVILFEVVFVLAIASSLLF 339 (357)
Q Consensus 286 ~--R~~~~~~~~~~~~l~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 339 (357)
. |+++.++.+....++..++|.+...+.+..++..++++.++..+++.+..++.
T Consensus 141 ~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~ 196 (491)
T 4aps_A 141 DRRRDAGFSIFVFGINLGAFIAPLIVGAAQEAAGYHVAFSLAAIGMFIGLLVYYFG 196 (491)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccceeeehHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHh
Confidence 8 77777777888889999999998888776666666666666555555554443
No 11
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=99.14 E-value=2.6e-10 Score=104.75 Aligned_cols=140 Identities=16% Similarity=0.024 Sum_probs=99.2
Q ss_pred HHHHhhhhhHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhhhhccccccCcc
Q 018373 207 FIASLAELPGLILSAIIVDKIGRKLSMVLMFVSACIFLLPLVFHQSAVVTTVLLFGVRMCVTGTITVATIYAPEIYPTSA 286 (357)
Q Consensus 207 ~i~~~~~~~~~~~~~~l~d~~GRR~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ElfPt~~ 286 (357)
.+..+...++.++.+++.||+|||+.+..+..+..+........++........+...+......+....+.+|.+|.+.
T Consensus 42 ~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~ 121 (375)
T 2gfp_A 42 GAYLLTYGVSQLFYGPISDRVGRRPVILVGMSIFMLATLVAVTTSSLTVLIAASAMQGMGTGVGGVMARTLPRDLYERTQ 121 (375)
T ss_dssp HHHHHHHHHHHTTHHHHHTTSCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSS
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHhhhhhHHHHHHHHCCHHH
Confidence 44567778888999999999999999988777766655544443332222222222223333345677889999999999
Q ss_pred hhhHHHHHHHHHHHHHhHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHHhhccccccCc
Q 018373 287 RTTGFGVASSLGKVGGMVCPLVAVGLVTSCHLRLAVILFEVVFVLAIASSLLFPFETMGR 346 (357)
Q Consensus 287 R~~~~~~~~~~~~l~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~pet~~~ 346 (357)
|+++.++.+....++..++|.+...+.+..++...+++.++..++..+...+..||++..
T Consensus 122 ~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 181 (375)
T 2gfp_A 122 LRHANSLLNMGILVSPLLAPLIGGLLDTMWNWRACYLFLLVLCAGVTFSMARWMPETRPV 181 (375)
T ss_dssp CCSHHHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHHHCCCCCSSCCCSTT
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHCcccCCC
Confidence 999999999999999999998888766554555566666666666666566777887654
No 12
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=99.09 E-value=2.6e-09 Score=102.59 Aligned_cols=135 Identities=13% Similarity=0.064 Sum_probs=91.4
Q ss_pred HHHHhhhhhHHHHHHHHHHhh-chhHHHHHHHHHHHHHHHHHHhhh-hhHHHHHHHHHHHHHhhhhhhhhhhhccccccC
Q 018373 207 FIASLAELPGLILSAIIVDKI-GRKLSMVLMFVSACIFLLPLVFHQ-SAVVTTVLLFGVRMCVTGTITVATIYAPEIYPT 284 (357)
Q Consensus 207 ~i~~~~~~~~~~~~~~l~d~~-GRR~~~~~~~~~~~i~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ElfPt 284 (357)
.+..++..++.++.|++.||+ |||+.+..+.++..+..+...... +.....+..+...+......+....+.+|.+|.
T Consensus 61 ~~~~~~~~~~~~~~G~l~dr~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~ 140 (524)
T 2xut_A 61 HSFVIGVYFFPLLGGWIADRFFGKYNTILWLSLIYCVGHAFLAIFEHSVQGFYTGLFLIALGSGGIKPLVSSFMGDQFDQ 140 (524)
T ss_dssp HHHHHHHHHTHHHHHHHHTTSSCSHHHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHTTHHHHHHHHHHTCST
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccchhHHHHHHHHcCc
Confidence 345667788899999999999 999999887776666555444433 332222222222333333456778899999999
Q ss_pred cchhhHHHH---HHHHHHHHHhHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHHhhccc
Q 018373 285 SARTTGFGV---ASSLGKVGGMVCPLVAVGLVTSCHLRLAVILFEVVFVLAIASSLLFPF 341 (357)
Q Consensus 285 ~~R~~~~~~---~~~~~~l~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~p 341 (357)
+.|+++.++ .+....++..++|.+...+.+..++...+++.+++.+++.+..++..|
T Consensus 141 ~~r~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~ 200 (524)
T 2xut_A 141 SNKSLAQKAFDMFYFTINFGSFFASLSMPLLLKNFGAAVAFGIPGVLMFVATVFFWLGRK 200 (524)
T ss_dssp TTTTHHHHHHHHHHHHHHHHHHHHHHTSTHHHHTSCHHHHHHHHHHHHHHHHHHHHSSSS
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 999877666 778888889999988777766656556666666665655555444333
No 13
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=98.81 E-value=1.5e-07 Score=89.41 Aligned_cols=103 Identities=15% Similarity=0.055 Sum_probs=70.3
Q ss_pred HHhhhhhHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHh------------------hhhhHHHHHHHHHHHHHhhhh
Q 018373 209 ASLAELPGLILSAIIVDKIGRKLSMVLMFVSACIFLLPLVF------------------HQSAVVTTVLLFGVRMCVTGT 270 (357)
Q Consensus 209 ~~~~~~~~~~~~~~l~d~~GRR~~~~~~~~~~~i~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~ 270 (357)
..++.++|.++.|++.||+|||+.++++.++..+..+...+ ..+.....+.=+..++...+.
T Consensus 64 ~~~G~~iG~~~~G~laDr~GRk~~l~~~~~l~~i~~i~~a~~~~~~~~~~~~~~~~~~~a~~~~~l~~~R~l~G~g~G~~ 143 (491)
T 4gc0_A 64 ALIGCIIGGALGGYCSNRFGRRDSLKIAAVLFFISGVGSAWPELGFTSINPDNTVPVYLAGYVPEFVIYRIIGGIGVGLA 143 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHCTTTTTSCSSSSSSCCGGGGGCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhhhhhhhcchhHHHHHHhhhHHHHHHHHHHHHHHHHHH
Confidence 35667889999999999999999998887766555443332 111111112222233333445
Q ss_pred hhhhhhhccccccCcchhhHHHHHHHHHHHHHhHHHHHHHH
Q 018373 271 ITVATIYAPEIYPTSARTTGFGVASSLGKVGGMVCPLVAVG 311 (357)
Q Consensus 271 ~~~~~~~~~ElfPt~~R~~~~~~~~~~~~l~~~~~p~~~~~ 311 (357)
.+....+.+|..|.+.|+...++......++...++.+...
T Consensus 144 ~~~~~~~i~E~~p~~~rg~~~~~~~~~~~~g~~~~~~~~~~ 184 (491)
T 4gc0_A 144 SMLSPMYIAELAPAHIRGKLVSFNQFAIIFGQLLVYCVNYF 184 (491)
T ss_dssp HHHHHHHHHTTSCGGGHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhCCHHhhhhhHHhhhhhhhhhhhhhhhcchh
Confidence 67889999999999999999998887776766666555443
No 14
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Probab=97.73 E-value=1e-05 Score=75.25 Aligned_cols=136 Identities=13% Similarity=0.073 Sum_probs=67.8
Q ss_pred HHHHhhhhhHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHH---hhhhhHHHH-HHHHHHHHHhhhhhhhhhhhccccc
Q 018373 207 FIASLAELPGLILSAIIVDKIGRKLSMVLMFVSACIFLLPLV---FHQSAVVTT-VLLFGVRMCVTGTITVATIYAPEIY 282 (357)
Q Consensus 207 ~i~~~~~~~~~~~~~~l~d~~GRR~~~~~~~~~~~i~~~~~~---~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~Elf 282 (357)
....++..++.++.|++.||+|||+.++.+..+..+...... ......... .............++.......+..
T Consensus 50 ~~~~~~~~i~~~~~G~lsDr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 129 (417)
T 2cfq_A 50 AAISLFSLLFQPLFGLLSDKLGLRKYLLWIITGMLVMFAPFFIFIFGPLLQYNILVGSIVGGIYLGFCFNAGAPAVEAFI 129 (417)
T ss_dssp HHHHHHHHHHHHHHHHHHTTSTTCCHHHHHHHHTTSCHHHHHHHTHHHHHHTTCCHHHHGGGSSTTHHHHTTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 345677889999999999999999998876654432111111 100000000 0000000000011111112222333
Q ss_pred cC--cchhhHHHHHHHHHHHHHhHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHHhhccccc
Q 018373 283 PT--SARTTGFGVASSLGKVGGMVCPLVAVGLVTSCHLRLAVILFEVVFVLAIASSLLFPFET 343 (357)
Q Consensus 283 Pt--~~R~~~~~~~~~~~~l~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~pet 343 (357)
|. +.|+.+.|..+..+.++..++|.+...+.+. ++...+++.++..++..+..++.+||+
T Consensus 130 ~~~~~~~~~~~g~~~~~~~~g~~~~~~l~~~l~~~-~~~~~f~~~~~~~~~~~~~~~~~~~~~ 191 (417)
T 2cfq_A 130 EKVSRRSNFEFGRARMFGCVGWALGASIVGIMFTI-NNQFVFWLGSGCALILAVLLFFAKTDA 191 (417)
T ss_dssp HHHHHHHTCCHHHHSSSTTTHHHHHHHHHHHHHHH-CSHHHHTTTTTTTTTHHHHSCSSCCCC
T ss_pred HHhhhhcccchHHHHHHHHHHHHHHHHHHHHHHHh-chhHHHHHHHHHHHHHHHHHHHcCccc
Confidence 32 3456666777667778888888887776653 334444443333333334444445554
No 15
>2g9p_A Antimicrobial peptide latarcin 2A; helix-hinge-helix, antimicrobial protein; NMR {Synthetic}
Probab=37.05 E-value=24 Score=17.26 Aligned_cols=13 Identities=31% Similarity=0.455 Sum_probs=10.4
Q ss_pred HHHHHHhhchhHH
Q 018373 220 SAIIVDKIGRKLS 232 (357)
Q Consensus 220 ~~~l~d~~GRR~~ 232 (357)
.|-++.++|||..
T Consensus 3 fgklikkfgrkai 15 (26)
T 2g9p_A 3 FGKLIKKFGRKAI 15 (26)
T ss_dssp HHHHHHHHTSHHH
T ss_pred HHHHHHHHhHHHH
Confidence 4678899999864
Done!