Query 018374
Match_columns 357
No_of_seqs 137 out of 1525
Neff 8.6
Searched_HMMs 46136
Date Fri Mar 29 08:29:02 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018374.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/018374hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0667 Tas Predicted oxidored 100.0 4.6E-68 1E-72 496.8 31.6 306 9-328 1-310 (316)
2 KOG1575 Voltage-gated shaker-l 100.0 2.9E-66 6.4E-71 475.4 31.5 318 5-337 8-335 (336)
3 TIGR01293 Kv_beta voltage-depe 100.0 4.8E-61 1E-65 452.4 30.8 299 11-326 1-317 (317)
4 PRK10625 tas putative aldo-ket 100.0 9.2E-61 2E-65 455.8 32.0 316 9-328 1-340 (346)
5 PRK09912 L-glyceraldehyde 3-ph 100.0 1.7E-60 3.8E-65 453.3 32.4 310 4-328 8-334 (346)
6 COG0656 ARA1 Aldo/keto reducta 100.0 1.9E-59 4.1E-64 422.9 25.4 260 9-330 3-267 (280)
7 PLN02587 L-galactose dehydroge 100.0 1.5E-58 3.2E-63 435.1 29.4 290 11-328 1-301 (314)
8 cd06660 Aldo_ket_red Aldo-keto 100.0 1.9E-56 4.2E-61 415.5 30.8 281 11-325 1-285 (285)
9 PRK10376 putative oxidoreducta 100.0 1.3E-55 2.9E-60 410.3 30.7 277 12-328 10-289 (290)
10 PF00248 Aldo_ket_red: Aldo/ke 100.0 5.6E-56 1.2E-60 412.0 25.5 277 23-326 1-282 (283)
11 PRK11172 dkgB 2,5-diketo-D-glu 100.0 1.4E-54 3E-59 398.8 27.3 248 19-328 1-253 (267)
12 KOG1577 Aldo/keto reductase fa 100.0 6.2E-54 1.3E-58 387.0 25.5 269 11-330 6-288 (300)
13 COG4989 Predicted oxidoreducta 100.0 3.1E-54 6.8E-59 372.8 21.3 287 9-330 1-296 (298)
14 PRK14863 bifunctional regulato 100.0 7.4E-54 1.6E-58 398.0 24.1 270 18-326 2-281 (292)
15 PRK11565 dkgA 2,5-diketo-D-glu 100.0 6E-52 1.3E-56 382.7 26.6 255 12-330 7-265 (275)
16 COG1453 Predicted oxidoreducta 100.0 2E-50 4.4E-55 367.6 23.6 278 9-328 1-286 (391)
17 KOG1576 Predicted oxidoreducta 100.0 7.7E-50 1.7E-54 347.9 24.3 288 6-316 19-310 (342)
18 KOG3023 Glutamate-cysteine lig 97.8 5E-05 1.1E-09 66.6 6.1 73 149-222 153-227 (285)
19 cd03319 L-Ala-DL-Glu_epimerase 94.1 4.3 9.3E-05 38.1 16.8 153 40-226 134-290 (316)
20 cd03174 DRE_TIM_metallolyase D 87.2 11 0.00024 34.0 11.9 105 105-221 15-134 (265)
21 PRK10550 tRNA-dihydrouridine s 87.1 27 0.00058 32.9 15.5 137 40-196 73-225 (312)
22 cd03316 MR_like Mandelate race 86.4 31 0.00067 32.8 15.1 152 40-222 139-298 (357)
23 PRK07945 hypothetical protein; 86.0 21 0.00046 33.9 13.3 110 41-172 110-227 (335)
24 PRK08609 hypothetical protein; 82.3 22 0.00047 36.5 12.4 149 44-219 351-522 (570)
25 PRK08392 hypothetical protein; 81.6 29 0.00062 30.6 11.5 149 43-219 15-178 (215)
26 TIGR00735 hisF imidazoleglycer 81.0 43 0.00093 30.3 14.2 89 118-218 163-253 (254)
27 cd04731 HisF The cyclase subun 80.9 41 0.00089 30.1 12.9 153 40-214 82-243 (243)
28 cd00308 enolase_like Enolase-s 78.9 19 0.00041 32.0 9.6 73 155-227 134-208 (229)
29 COG1748 LYS9 Saccharopine dehy 77.7 11 0.00025 36.4 8.1 83 40-138 77-159 (389)
30 PF05913 DUF871: Bacterial pro 76.6 8 0.00017 37.1 6.7 211 40-309 12-235 (357)
31 PRK10558 alpha-dehydro-beta-de 76.4 33 0.00071 31.3 10.4 68 156-224 8-78 (256)
32 cd03315 MLE_like Muconate lact 75.5 63 0.0014 29.3 16.9 155 40-227 85-243 (265)
33 cd04740 DHOD_1B_like Dihydroor 75.0 70 0.0015 29.5 13.4 161 40-217 100-287 (296)
34 PRK07535 methyltetrahydrofolat 73.3 43 0.00092 30.6 10.4 135 107-279 23-157 (261)
35 PF03102 NeuB: NeuB family; I 72.6 20 0.00044 32.4 7.9 112 39-179 53-184 (241)
36 PRK10128 2-keto-3-deoxy-L-rham 70.5 63 0.0014 29.7 10.8 66 157-223 8-76 (267)
37 cd02930 DCR_FMN 2,4-dienoyl-Co 70.4 1E+02 0.0022 29.4 13.3 102 82-194 201-305 (353)
38 cd03321 mandelate_racemase Man 67.7 1.2E+02 0.0025 29.0 14.2 152 40-221 141-294 (355)
39 TIGR03239 GarL 2-dehydro-3-deo 67.2 66 0.0014 29.2 10.1 66 158-224 3-71 (249)
40 PRK13958 N-(5'-phosphoribosyl) 65.5 14 0.00029 32.6 5.2 66 118-196 16-83 (207)
41 PF07021 MetW: Methionine bios 65.4 18 0.0004 31.4 5.8 151 45-228 4-172 (193)
42 COG1140 NarY Nitrate reductase 65.4 2.9 6.3E-05 39.7 1.0 57 161-217 260-317 (513)
43 cd03318 MLE Muconate Lactonizi 65.4 37 0.00081 32.5 8.7 72 154-225 227-300 (365)
44 cd00423 Pterin_binding Pterin 65.3 93 0.002 28.2 10.9 107 106-223 21-128 (258)
45 TIGR01928 menC_lowGC/arch o-su 65.2 1.2E+02 0.0027 28.4 15.2 153 40-227 132-286 (324)
46 PRK06361 hypothetical protein; 65.0 94 0.002 27.0 17.2 187 42-284 10-201 (212)
47 COG4130 Predicted sugar epimer 64.9 46 0.00099 29.5 8.1 81 175-274 49-136 (272)
48 cd07943 DRE_TIM_HOA 4-hydroxy- 64.1 1.1E+02 0.0025 27.7 14.2 25 38-62 18-42 (263)
49 PRK09613 thiH thiamine biosynt 63.0 54 0.0012 32.8 9.4 170 40-221 29-238 (469)
50 PF04476 DUF556: Protein of un 62.3 93 0.002 27.9 9.8 157 40-218 9-183 (235)
51 cd03322 rpsA The starvation se 62.1 57 0.0012 31.2 9.3 70 155-224 203-274 (361)
52 TIGR00126 deoC deoxyribose-pho 61.9 62 0.0013 28.6 8.7 72 40-126 130-205 (211)
53 PRK00164 moaA molybdenum cofac 61.7 1.4E+02 0.0031 28.0 12.2 158 39-220 49-228 (331)
54 COG0135 TrpF Phosphoribosylant 60.8 78 0.0017 27.9 9.0 81 120-219 19-102 (208)
55 PTZ00413 lipoate synthase; Pro 60.6 1.3E+02 0.0028 29.2 11.0 169 39-226 177-373 (398)
56 PRK15072 bifunctional D-altron 60.2 88 0.0019 30.5 10.3 70 155-224 246-317 (404)
57 cd07943 DRE_TIM_HOA 4-hydroxy- 60.1 1E+02 0.0023 27.9 10.3 110 105-221 18-131 (263)
58 PRK01222 N-(5'-phosphoribosyl) 59.7 37 0.0008 29.9 7.0 65 119-197 19-86 (210)
59 cd00739 DHPS DHPS subgroup of 59.5 1.4E+02 0.003 27.2 12.7 106 106-222 21-127 (257)
60 TIGR02370 pyl_corrinoid methyl 59.1 87 0.0019 27.2 9.1 145 40-216 10-164 (197)
61 TIGR02534 mucon_cyclo muconate 58.9 51 0.0011 31.6 8.4 73 154-226 226-300 (368)
62 PRK10415 tRNA-dihydrouridine s 58.9 1.6E+02 0.0035 27.7 14.3 138 40-199 75-228 (321)
63 PRK07379 coproporphyrinogen II 57.7 38 0.00082 33.0 7.3 69 106-177 179-255 (400)
64 cd00740 MeTr MeTr subgroup of 57.5 1.5E+02 0.0033 26.9 11.0 104 105-223 22-127 (252)
65 PRK05660 HemN family oxidoredu 57.1 1.3E+02 0.0028 29.0 10.9 69 105-177 170-243 (378)
66 PRK09856 fructoselysine 3-epim 57.0 67 0.0015 29.1 8.6 52 205-275 93-144 (275)
67 PRK08446 coproporphyrinogen II 56.8 1.1E+02 0.0023 29.3 10.1 68 106-177 162-231 (350)
68 PRK06294 coproporphyrinogen II 56.1 48 0.001 31.9 7.7 69 105-177 166-243 (370)
69 PRK02083 imidazole glycerol ph 55.3 1.6E+02 0.0034 26.5 14.2 87 120-218 163-251 (253)
70 PF13378 MR_MLE_C: Enolase C-t 55.3 20 0.00044 27.6 4.1 51 173-223 3-54 (111)
71 PRK14017 galactonate dehydrata 55.2 1E+02 0.0022 29.7 9.8 69 155-223 217-287 (382)
72 PRK04452 acetyl-CoA decarbonyl 55.0 1.5E+02 0.0032 28.0 10.4 95 117-224 83-184 (319)
73 PHA02128 hypothetical protein 54.7 36 0.00079 26.3 5.1 68 154-221 62-150 (151)
74 PRK00507 deoxyribose-phosphate 54.1 63 0.0014 28.7 7.5 75 40-126 134-209 (221)
75 cd03323 D-glucarate_dehydratas 54.0 2.2E+02 0.0047 27.7 15.4 70 155-224 250-321 (395)
76 PF00682 HMGL-like: HMGL-like 53.8 1.6E+02 0.0034 26.0 11.4 155 39-214 11-178 (237)
77 cd03327 MR_like_2 Mandelate ra 53.8 2E+02 0.0043 27.2 15.6 68 155-222 211-280 (341)
78 cd01974 Nitrogenase_MoFe_beta 53.0 2.4E+02 0.0051 27.8 12.4 115 60-193 62-192 (435)
79 PLN02363 phosphoribosylanthran 53.0 26 0.00057 31.9 5.0 73 107-196 56-130 (256)
80 TIGR01502 B_methylAsp_ase meth 52.1 1E+02 0.0022 30.3 9.1 70 155-224 281-357 (408)
81 TIGR00190 thiC thiamine biosyn 52.0 1.2E+02 0.0027 29.4 9.3 142 40-218 75-219 (423)
82 PRK05283 deoxyribose-phosphate 50.8 1.1E+02 0.0023 28.0 8.5 88 22-128 134-227 (257)
83 COG0635 HemN Coproporphyrinoge 50.3 1.1E+02 0.0024 30.0 9.2 119 21-177 148-276 (416)
84 COG2089 SpsE Sialic acid synth 50.2 1.2E+02 0.0026 28.6 8.8 119 39-185 87-224 (347)
85 PF05690 ThiG: Thiazole biosyn 49.8 66 0.0014 28.9 6.7 113 22-167 9-125 (247)
86 PRK14461 ribosomal RNA large s 49.4 1.1E+02 0.0023 29.6 8.6 97 130-226 232-352 (371)
87 PF14871 GHL6: Hypothetical gl 49.3 33 0.00072 27.8 4.5 25 201-225 43-67 (132)
88 PLN02389 biotin synthase 49.1 2.2E+02 0.0047 27.6 10.9 108 39-166 116-227 (379)
89 PRK08195 4-hyroxy-2-oxovalerat 49.0 2.4E+02 0.0053 26.8 15.5 25 38-62 21-45 (337)
90 TIGR03247 glucar-dehydr glucar 48.9 2.8E+02 0.0061 27.5 14.7 70 155-224 268-338 (441)
91 TIGR03217 4OH_2_O_val_ald 4-hy 48.5 2.5E+02 0.0053 26.7 15.6 25 38-62 20-44 (333)
92 TIGR02311 HpaI 2,4-dihydroxyhe 48.4 2.1E+02 0.0045 25.9 10.3 62 158-221 3-68 (249)
93 COG4464 CapC Capsular polysacc 48.1 78 0.0017 28.1 6.7 66 34-134 13-78 (254)
94 PF11242 DUF2774: Protein of u 47.3 25 0.00054 24.4 2.9 22 264-285 15-36 (63)
95 PRK05588 histidinol-phosphatas 47.3 2.1E+02 0.0046 25.7 10.3 157 41-221 15-185 (255)
96 PRK07259 dihydroorotate dehydr 47.0 2.4E+02 0.0051 26.1 12.4 164 40-217 102-290 (301)
97 cd01965 Nitrogenase_MoFe_beta_ 46.9 2.9E+02 0.0063 27.1 12.6 113 63-194 61-188 (428)
98 cd03314 MAL Methylaspartate am 46.6 2.1E+02 0.0045 27.6 10.3 69 155-223 245-320 (369)
99 COG2069 CdhD CO dehydrogenase/ 46.3 2.5E+02 0.0055 26.2 10.8 99 117-225 158-261 (403)
100 PLN02428 lipoic acid synthase 46.2 2.8E+02 0.006 26.6 11.7 168 39-226 130-325 (349)
101 PF00697 PRAI: N-(5'phosphorib 45.9 59 0.0013 28.2 5.9 82 118-219 14-96 (197)
102 PRK00077 eno enolase; Provisio 45.9 2.8E+02 0.006 27.3 11.3 96 106-220 261-361 (425)
103 PRK13352 thiamine biosynthesis 45.5 1.9E+02 0.004 28.4 9.5 142 40-219 75-223 (431)
104 COG0502 BioB Biotin synthase a 45.5 1.5E+02 0.0032 28.2 8.8 144 39-202 84-234 (335)
105 PRK09058 coproporphyrinogen II 45.4 92 0.002 30.9 7.9 28 106-134 227-254 (449)
106 PRK13347 coproporphyrinogen II 44.9 62 0.0014 32.1 6.6 122 45-177 152-291 (453)
107 cd07944 DRE_TIM_HOA_like 4-hyd 44.8 2.5E+02 0.0053 25.6 10.4 113 104-221 15-128 (266)
108 TIGR02026 BchE magnesium-proto 44.6 1.3E+02 0.0028 30.2 9.0 65 150-216 321-392 (497)
109 cd04728 ThiG Thiazole synthase 44.4 2.5E+02 0.0053 25.5 14.2 106 105-221 72-181 (248)
110 cd02801 DUS_like_FMN Dihydrour 43.6 2.2E+02 0.0048 24.8 12.0 134 40-197 65-215 (231)
111 PRK05692 hydroxymethylglutaryl 43.5 56 0.0012 30.3 5.7 103 105-220 22-138 (287)
112 TIGR01060 eno phosphopyruvate 42.4 3.2E+02 0.007 26.9 11.1 96 106-220 262-362 (425)
113 cd03317 NAAAR N-acylamino acid 41.6 3.1E+02 0.0068 25.9 14.6 148 42-224 139-288 (354)
114 PF01207 Dus: Dihydrouridine s 41.3 2E+02 0.0044 26.8 9.2 134 40-195 64-213 (309)
115 PLN00191 enolase 41.3 2.2E+02 0.0048 28.4 9.7 97 106-221 295-394 (457)
116 cd07948 DRE_TIM_HCS Saccharomy 40.3 2.9E+02 0.0063 25.2 10.3 25 39-63 19-43 (262)
117 PRK13803 bifunctional phosphor 40.2 1.1E+02 0.0023 31.8 7.7 88 120-219 20-108 (610)
118 TIGR00676 fadh2 5,10-methylene 40.1 2.9E+02 0.0064 25.2 13.3 155 42-218 15-186 (272)
119 TIGR03822 AblA_like_2 lysine-2 39.4 3.3E+02 0.0072 25.6 11.8 74 155-228 156-240 (321)
120 COG0135 TrpF Phosphoribosylant 38.9 1.7E+02 0.0037 25.8 7.6 96 40-175 11-110 (208)
121 PRK01221 putative deoxyhypusin 38.6 1.7E+02 0.0037 27.5 8.0 74 7-86 9-82 (312)
122 PRK13796 GTPase YqeH; Provisio 38.4 3.7E+02 0.0079 25.8 11.4 137 23-182 35-178 (365)
123 PRK08208 coproporphyrinogen II 38.4 2.4E+02 0.0052 27.7 9.6 122 45-178 141-276 (430)
124 COG1801 Uncharacterized conser 38.3 3.2E+02 0.0068 25.0 11.6 109 23-138 4-115 (263)
125 cd00405 PRAI Phosphoribosylant 38.2 2.6E+02 0.0057 24.1 9.0 41 126-180 73-113 (203)
126 COG0274 DeoC Deoxyribose-phosp 37.9 2.3E+02 0.005 25.3 8.3 86 21-126 127-213 (228)
127 PTZ00081 enolase; Provisional 37.4 3.7E+02 0.008 26.6 10.6 96 106-220 281-381 (439)
128 cd03324 rTSbeta_L-fuconate_deh 37.3 4.1E+02 0.0089 26.0 14.6 150 40-222 196-352 (415)
129 COG3215 PilZ Tfp pilus assembl 36.6 1.8E+02 0.004 22.4 6.4 80 40-121 18-106 (117)
130 COG4943 Predicted signal trans 36.0 1.6E+02 0.0034 29.5 7.5 128 71-221 341-477 (524)
131 PRK15440 L-rhamnonate dehydrat 35.8 1.3E+02 0.0028 29.3 7.2 69 153-221 246-318 (394)
132 PRK05628 coproporphyrinogen II 35.5 2.7E+02 0.0058 26.7 9.3 28 105-133 171-198 (375)
133 cd08583 PI-PLCc_GDPD_SF_unchar 35.4 3.2E+02 0.0068 24.2 9.7 20 41-60 14-33 (237)
134 cd06543 GH18_PF-ChiA-like PF-C 35.2 3.7E+02 0.0081 25.0 10.9 186 24-227 72-265 (294)
135 COG1121 ZnuC ABC-type Mn/Zn tr 35.0 1.7E+02 0.0036 26.7 7.2 70 106-185 112-207 (254)
136 cd03320 OSBS o-Succinylbenzoat 34.9 1.5E+02 0.0032 26.9 7.1 71 155-226 167-238 (263)
137 KOG2264 Exostosin EXT1L [Signa 34.9 1.4E+02 0.003 30.4 6.9 63 68-146 632-696 (907)
138 PRK05406 LamB/YcsF family prot 34.0 1.1E+02 0.0024 27.7 5.7 83 25-123 13-96 (246)
139 PRK06582 coproporphyrinogen II 33.7 1.4E+02 0.0031 28.9 7.1 69 105-177 173-250 (390)
140 PRK14465 ribosomal RNA large s 33.4 2.9E+02 0.0062 26.4 8.8 97 130-226 216-329 (342)
141 TIGR00737 nifR3_yhdG putative 33.4 4E+02 0.0088 24.8 13.7 140 40-199 73-226 (319)
142 PF07994 NAD_binding_5: Myo-in 33.2 3E+02 0.0066 25.7 8.8 152 107-305 130-285 (295)
143 COG1387 HIS2 Histidinol phosph 33.2 3.3E+02 0.0072 24.3 8.9 151 44-219 18-190 (237)
144 cd00959 DeoC 2-deoxyribose-5-p 33.1 2.8E+02 0.0061 24.0 8.2 70 40-124 129-202 (203)
145 TIGR00538 hemN oxygen-independ 33.0 1.3E+02 0.0028 29.9 6.7 122 45-177 151-290 (455)
146 PF14502 HTH_41: Helix-turn-he 33.0 46 0.00099 21.9 2.3 30 262-291 6-37 (48)
147 PRK02901 O-succinylbenzoate sy 32.6 4.1E+02 0.0088 25.1 9.7 71 155-227 173-244 (327)
148 TIGR00742 yjbN tRNA dihydrouri 32.4 4.3E+02 0.0093 24.8 14.0 143 40-195 65-223 (318)
149 PRK08195 4-hyroxy-2-oxovalerat 32.2 4.5E+02 0.0097 25.0 10.7 111 104-221 20-134 (337)
150 cd02070 corrinoid_protein_B12- 32.1 3.3E+02 0.0072 23.5 10.5 145 40-216 9-162 (201)
151 TIGR01496 DHPS dihydropteroate 31.7 3.9E+02 0.0086 24.2 12.5 104 106-222 20-125 (257)
152 PRK09427 bifunctional indole-3 31.6 81 0.0018 31.4 5.0 65 119-198 273-339 (454)
153 cd07937 DRE_TIM_PC_TC_5S Pyruv 31.5 4.1E+02 0.0088 24.3 14.8 123 39-183 18-154 (275)
154 PRK08599 coproporphyrinogen II 31.4 1.8E+02 0.004 27.8 7.4 69 106-177 164-240 (377)
155 PRK05799 coproporphyrinogen II 31.4 1.8E+02 0.004 27.8 7.4 27 106-133 163-189 (374)
156 cd02810 DHOD_DHPD_FMN Dihydroo 31.3 4.1E+02 0.0088 24.2 12.4 141 40-195 109-272 (289)
157 TIGR01927 menC_gamma/gm+ o-suc 31.2 4.4E+02 0.0095 24.5 9.8 73 156-228 196-270 (307)
158 PF11020 DUF2610: Domain of un 31.2 1.1E+02 0.0023 22.5 4.1 29 256-284 48-76 (82)
159 PRK12569 hypothetical protein; 30.9 1.3E+02 0.0028 27.2 5.7 85 25-123 14-99 (245)
160 KOG1720 Protein tyrosine phosp 30.9 3.8E+02 0.0082 23.8 8.4 64 155-221 20-100 (225)
161 TIGR00381 cdhD CO dehydrogenas 30.5 5.2E+02 0.011 25.2 13.1 109 109-227 128-252 (389)
162 TIGR03821 AblA_like_1 lysine-2 30.4 4.7E+02 0.01 24.6 12.2 93 127-228 143-246 (321)
163 TIGR01430 aden_deam adenosine 30.4 4.5E+02 0.0098 24.4 13.1 156 44-220 74-238 (324)
164 PF00682 HMGL-like: HMGL-like 30.1 1.8E+02 0.004 25.6 6.7 98 105-218 10-124 (237)
165 PRK06740 histidinol-phosphatas 29.7 4.9E+02 0.011 24.6 10.9 24 41-64 60-83 (331)
166 cd03325 D-galactonate_dehydrat 29.7 4.9E+02 0.011 24.7 16.8 68 155-222 216-285 (352)
167 PRK07094 biotin synthase; Prov 29.5 4.7E+02 0.01 24.3 12.0 123 39-185 70-202 (323)
168 PRK00730 rnpA ribonuclease P; 29.5 1.6E+02 0.0035 24.1 5.6 46 83-138 47-94 (138)
169 KOG0023 Alcohol dehydrogenase, 29.5 2.2E+02 0.0048 27.0 7.0 150 7-218 172-324 (360)
170 PRK02227 hypothetical protein; 29.4 4.3E+02 0.0092 23.9 9.4 157 40-218 9-183 (238)
171 TIGR01182 eda Entner-Doudoroff 29.3 1.9E+02 0.0041 25.4 6.4 59 155-220 47-106 (204)
172 PRK15108 biotin synthase; Prov 29.1 5.1E+02 0.011 24.6 11.4 111 39-169 76-188 (345)
173 PRK01045 ispH 4-hydroxy-3-meth 29.0 3.2E+02 0.007 25.5 8.2 116 155-306 144-274 (298)
174 PF01118 Semialdhyde_dh: Semia 28.8 76 0.0016 24.9 3.6 27 40-66 75-101 (121)
175 cd04734 OYE_like_3_FMN Old yel 28.8 5.1E+02 0.011 24.6 14.9 106 82-194 205-314 (343)
176 cd02932 OYE_YqiM_FMN Old yello 28.4 5.1E+02 0.011 24.4 15.6 97 82-194 218-319 (336)
177 PRK14459 ribosomal RNA large s 28.4 1.9E+02 0.0042 28.0 6.8 98 129-226 241-359 (373)
178 TIGR00048 radical SAM enzyme, 28.3 1.8E+02 0.004 27.8 6.7 97 130-226 219-333 (355)
179 TIGR00216 ispH_lytB (E)-4-hydr 28.2 2.7E+02 0.0058 25.8 7.4 116 155-306 144-272 (280)
180 PF05368 NmrA: NmrA-like famil 28.2 2.4E+02 0.0052 24.5 7.1 71 156-227 35-106 (233)
181 COG0282 ackA Acetate kinase [E 27.7 2.7E+02 0.0059 27.0 7.5 122 157-309 162-291 (396)
182 PRK14457 ribosomal RNA large s 27.5 5.5E+02 0.012 24.5 13.0 70 105-185 128-201 (345)
183 cd03328 MR_like_3 Mandelate ra 27.5 5.4E+02 0.012 24.4 14.5 68 155-222 222-293 (352)
184 cd08562 GDPD_EcUgpQ_like Glyce 27.3 4.1E+02 0.009 23.0 8.5 19 205-223 189-207 (229)
185 PF02401 LYTB: LytB protein; 27.2 1.9E+02 0.0041 26.8 6.3 117 155-307 143-274 (281)
186 PF00072 Response_reg: Respons 27.1 1.7E+02 0.0038 21.6 5.3 65 119-196 36-102 (112)
187 cd01973 Nitrogenase_VFe_beta_l 26.7 6.4E+02 0.014 25.0 13.7 119 60-194 63-194 (454)
188 TIGR02082 metH 5-methyltetrahy 26.4 8.6E+02 0.019 27.6 12.1 102 107-222 366-471 (1178)
189 PF00762 Ferrochelatase: Ferro 26.4 3.1E+02 0.0067 25.8 7.8 90 108-224 206-297 (316)
190 PRK09240 thiH thiamine biosynt 26.3 5.9E+02 0.013 24.4 10.0 100 104-217 102-217 (371)
191 PRK09061 D-glutamate deacylase 26.1 4.7E+02 0.01 26.4 9.5 114 43-173 170-283 (509)
192 COG2040 MHT1 Homocysteine/sele 26.0 5.4E+02 0.012 24.0 10.8 166 40-221 41-239 (300)
193 PRK07764 DNA polymerase III su 25.9 6.1E+02 0.013 27.5 10.6 96 107-218 101-199 (824)
194 cd07940 DRE_TIM_IPMS 2-isoprop 25.8 4.4E+02 0.0095 23.9 8.5 98 104-219 15-131 (268)
195 PRK12360 4-hydroxy-3-methylbut 25.8 3.8E+02 0.0082 24.8 8.0 116 155-306 147-273 (281)
196 PRK05414 urocanate hydratase; 25.5 1.2E+02 0.0026 30.4 4.8 117 45-186 115-254 (556)
197 COG1751 Uncharacterized conser 25.5 2.3E+02 0.005 23.7 5.7 73 40-125 12-85 (186)
198 PRK02301 putative deoxyhypusin 25.4 2.1E+02 0.0046 27.0 6.3 70 8-86 13-85 (316)
199 PF10668 Phage_terminase: Phag 25.4 1.3E+02 0.0027 20.9 3.6 17 264-280 24-40 (60)
200 PF01402 RHH_1: Ribbon-helix-h 25.3 1.1E+02 0.0024 18.4 3.2 22 259-280 8-29 (39)
201 PRK08776 cystathionine gamma-s 25.3 3.6E+02 0.0079 26.2 8.3 73 155-227 113-187 (405)
202 PF00809 Pterin_bind: Pterin b 25.3 4.6E+02 0.0099 22.8 8.4 64 155-224 60-125 (210)
203 PRK09249 coproporphyrinogen II 25.2 2.2E+02 0.0048 28.1 6.9 28 105-133 214-241 (453)
204 TIGR03217 4OH_2_O_val_ald 4-hy 25.2 4.6E+02 0.0099 24.9 8.7 106 104-221 19-133 (333)
205 COG3623 SgaU Putative L-xylulo 25.2 1.5E+02 0.0033 26.7 4.9 75 16-92 65-155 (287)
206 cd07939 DRE_TIM_NifV Streptomy 25.0 5.1E+02 0.011 23.3 15.5 24 39-62 17-40 (259)
207 PRK13361 molybdenum cofactor b 24.9 5.8E+02 0.013 23.9 12.8 103 39-166 45-154 (329)
208 cd03329 MR_like_4 Mandelate ra 24.8 6.1E+02 0.013 24.2 14.5 151 40-222 143-299 (368)
209 TIGR01228 hutU urocanate hydra 24.8 1.2E+02 0.0026 30.3 4.6 117 45-186 106-245 (545)
210 COG2200 Rtn c-di-GMP phosphodi 24.7 5.2E+02 0.011 23.3 9.7 131 71-222 69-213 (256)
211 TIGR02026 BchE magnesium-proto 24.6 5.9E+02 0.013 25.5 9.9 102 106-221 222-342 (497)
212 PRK06424 transcription factor; 24.6 1.7E+02 0.0037 24.1 5.0 81 204-285 22-109 (144)
213 cd03326 MR_like_1 Mandelate ra 24.5 6.5E+02 0.014 24.3 14.2 146 40-218 160-314 (385)
214 cd01821 Rhamnogalacturan_acety 24.4 4.1E+02 0.0088 22.4 7.7 94 166-278 36-151 (198)
215 cd00945 Aldolase_Class_I Class 24.3 4.2E+02 0.0091 22.1 8.1 76 40-135 11-87 (201)
216 COG1104 NifS Cysteine sulfinat 24.2 2.9E+02 0.0063 26.8 7.1 75 155-229 105-185 (386)
217 PF08734 GYD: GYD domain; Int 24.0 3E+02 0.0066 20.5 5.9 72 109-184 19-90 (91)
218 PRK07328 histidinol-phosphatas 23.9 5.4E+02 0.012 23.2 13.5 117 43-173 19-161 (269)
219 COG0761 lytB 4-Hydroxy-3-methy 23.8 4.1E+02 0.009 24.7 7.6 119 154-307 145-277 (294)
220 cd00248 Mth938-like Mth938-lik 23.7 2.1E+02 0.0045 22.2 5.1 53 172-224 36-88 (109)
221 KOG2018 Predicted dinucleotide 23.7 6.2E+02 0.013 24.1 8.7 17 205-221 180-196 (430)
222 PF07287 DUF1446: Protein of u 23.5 1.9E+02 0.0041 27.9 5.7 86 155-275 12-100 (362)
223 PRK06015 keto-hydroxyglutarate 23.4 1.9E+02 0.0041 25.3 5.3 59 155-220 43-102 (201)
224 KOG0059 Lipid exporter ABCA1 a 23.0 3E+02 0.0066 29.9 7.9 73 105-186 669-767 (885)
225 PRK09856 fructoselysine 3-epim 22.9 3.6E+02 0.0079 24.2 7.5 51 176-226 14-71 (275)
226 cd03313 enolase Enolase: Enola 22.8 7.2E+02 0.016 24.3 11.2 96 106-220 261-361 (408)
227 COG0626 MetC Cystathionine bet 22.3 3.5E+02 0.0077 26.4 7.4 82 151-232 112-196 (396)
228 TIGR03822 AblA_like_2 lysine-2 22.2 6.6E+02 0.014 23.5 11.1 102 40-166 120-228 (321)
229 PF11590 DNAPolymera_Pol: DNA 21.8 76 0.0017 19.9 1.8 33 20-53 6-38 (41)
230 TIGR00035 asp_race aspartate r 21.8 3.4E+02 0.0075 23.9 6.8 82 106-188 14-98 (229)
231 smart00642 Aamy Alpha-amylase 21.2 85 0.0018 26.4 2.6 22 204-225 72-93 (166)
232 cd00408 DHDPS-like Dihydrodipi 21.1 6.2E+02 0.013 22.9 16.3 54 39-93 15-74 (281)
233 cd01966 Nitrogenase_NifN_1 Nit 21.1 7.8E+02 0.017 24.0 10.8 112 63-193 61-189 (417)
234 PF13167 GTP-bdg_N: GTP-bindin 21.0 57 0.0012 24.9 1.3 67 259-327 7-80 (95)
235 PRK01033 imidazole glycerol ph 21.0 6.2E+02 0.013 22.8 12.7 124 48-190 89-221 (258)
236 PRK10551 phage resistance prot 20.9 6.6E+02 0.014 25.4 9.4 115 85-221 349-473 (518)
237 PF09391 DUF2000: Protein of u 20.8 2.1E+02 0.0046 23.2 4.7 47 40-86 62-108 (133)
238 PRK08084 DNA replication initi 20.8 4.2E+02 0.0091 23.5 7.2 48 127-180 98-145 (235)
239 PRK02714 O-succinylbenzoate sy 20.7 7E+02 0.015 23.3 14.5 71 155-227 206-277 (320)
240 cd08556 GDPD Glycerophosphodie 20.7 3.1E+02 0.0067 22.7 6.2 23 40-62 11-33 (189)
241 TIGR03278 methan_mark_10 putat 20.6 8.1E+02 0.017 24.0 10.6 83 106-200 54-140 (404)
242 PF01081 Aldolase: KDPG and KH 20.5 2.7E+02 0.0059 24.2 5.6 58 155-220 47-106 (196)
243 TIGR01163 rpe ribulose-phospha 20.4 5.4E+02 0.012 21.9 8.6 100 106-219 8-108 (210)
244 PF01175 Urocanase: Urocanase; 20.3 1.6E+02 0.0034 29.6 4.5 117 45-186 105-244 (546)
245 COG2102 Predicted ATPases of P 20.3 2.2E+02 0.0049 25.3 5.1 92 155-277 79-177 (223)
246 KOG2400 Nuclear protein ZAP [D 20.2 30 0.00065 23.9 -0.3 42 126-172 9-50 (82)
247 PRK09490 metH B12-dependent me 20.2 1.3E+03 0.027 26.5 11.8 83 170-275 434-518 (1229)
No 1
>COG0667 Tas Predicted oxidoreductases (related to aryl-alcohol dehydrogenases) [Energy production and conversion]
Probab=100.00 E-value=4.6e-68 Score=496.77 Aligned_cols=306 Identities=43% Similarity=0.684 Sum_probs=274.5
Q ss_pred CCceecCCCCcccccceeccccccCCCCCCCCHHHHHHHHHHHHHcCCCeEeCccCcCCCchHHHHHHHHhcCC-CCCeE
Q 018374 9 APRVKLGTQGLEVSKLGFGCMGLTGMYNSPVSEEDGISIIKHAFNKGITFFDTADVYGAHANEVLVGKVLKQLP-RKKIQ 87 (357)
Q Consensus 9 m~~~~lg~tg~~vs~lglG~~~~g~~~~~~~~~~~~~~~l~~A~~~Gin~~DtA~~Yg~g~sE~~lG~al~~~~-R~~~~ 87 (357)
|++++||++|++||+||||||.+|+.+.. .+.+++.++|++|+++||||||||+.||.|.||+++|+||+... |++++
T Consensus 1 m~~r~lG~~gl~vs~lglG~~~~g~~~~~-~~~~~a~~il~~A~d~Gin~~DTA~~Yg~g~sE~ilG~~l~~~~~Rd~vv 79 (316)
T COG0667 1 MKYRRLGRSGLKVSPLGLGTMTLGGDTDD-EEEAEAIEILDAALDAGINFFDTADVYGDGRSEEILGEALKERGRRDKVV 79 (316)
T ss_pred CCceecCCCCceecceeeeccccCCCCCc-hhhhHHHHHHHHHHHcCCCEEECccccCCCchHHHHHHHHhccCCCCeEE
Confidence 78999999999999999999999875322 25557788999999999999999999999999999999999864 89999
Q ss_pred EEeeeeeccCCCccc-ccCCCHHHHHHHHHHHHhHhCCCcccEEEeecCCCCCCccccccCCCChhHHHHHHHHHHHcCc
Q 018374 88 LASKFGVVSMAPTSV-IVKGTPEYVRSCCEASLKRLGVDYIDLYYQHRVDPSVPIEDTVCDSLPTSLNIGELKMLVVEGK 166 (357)
Q Consensus 88 I~tK~~~~~~~~~~~-~~~~~~~~i~~~v~~sL~~Lg~d~iDl~~lH~pd~~~~~~~~~~~~~~~~~~~~aL~~L~~~G~ 166 (357)
|+||++......... ..++++++|+++++.||+||||||||+||+||||+..+.+++ +.+|.+|+++|+
T Consensus 80 IaTK~g~~~~~~~~~~~~~~s~~~i~~~v~~SL~RLgtd~IDl~~iH~~d~~~p~~e~----------~~aL~~l~~~G~ 149 (316)
T COG0667 80 IATKVGYRPGDPGPNGVFGLSRDHIRRAVEASLKRLGTDYIDLYQLHRPDPETPIEET----------LEALDELVREGK 149 (316)
T ss_pred EEEeeccCCCCCCCCccCCCCHHHHHHHHHHHHHHhCCCceeEEEeCCCCCCCCHHHH----------HHHHHHHHHcCC
Confidence 999999876432111 257899999999999999999999999999999998888888 999999999999
Q ss_pred cceEecCCCCHHHHHHHhcc-CCceEEeccccccccchhhhHHHHHHHhCCceeecccCccccCCCCCcCCCCCCCcccc
Q 018374 167 IKYIGLSEASPDTIRRAHAV-HPITAVQMEWSLLTRDIEEEIIPLCRELGIGIVPYSPLGRGLLGGKAVVESLPANSFLI 245 (357)
Q Consensus 167 ir~iGvS~~~~~~l~~~~~~-~~~~~~q~~~n~~~~~~~~~~~~~~~~~gi~v~a~spl~~G~L~g~~~~~~~~~~~~~~ 245 (357)
||+||+||++.+++.++++. .+++++|.+||+++++.+.+++++|+++||++++||||++|+|+|++... ..+.+.
T Consensus 150 ir~iG~S~~~~~~i~~a~~~~~~~~~~Q~~ynl~~R~~e~~l~~~~~~~gi~~~~~spla~G~Ltgk~~~~---~~~~r~ 226 (316)
T COG0667 150 IRYIGVSNYSAEQIAEALAVAAPIDSLQPEYNLLERDAEKELLPLCREEGIGLLAYSPLASGLLTGKYLPG---PEGSRA 226 (316)
T ss_pred eeEEEecCCCHHHHHHHHHhcCCceeecccCccccccchhHHHHHHHHcCCeEEEecCccccccCCCcCCC---cchhhc
Confidence 99999999999999999999 59999999999999877778999999999999999999999999995443 222232
Q ss_pred c-CCCCCCCcchhhHHHHHHHHHHHHhcCCChHHHHHHHHHhCCCCeEEecCCCCHHHHHHHHhccCCCCCHHHHHHHHh
Q 018374 246 S-HPRFTGENLGKNKQIYARVENLAKRNKCTPAQLSLAWLLRQGDDIVPIPGTTKIKNLDENIGSLMMKLTKEDMKEILN 324 (357)
Q Consensus 246 ~-~~~~~~~~~~~~~~~~~~l~~ia~~~g~s~~q~al~~~l~~~~v~~~ivG~~~~~~l~enl~a~~~~L~~~~~~~i~~ 324 (357)
. .+.|..+..+......+.++++|+++|+|++|+||+|++++|.|++||+|+++++||++|+++++..|++++++.|++
T Consensus 227 ~~~~~~~~~~~~~~~~~~~~l~~~a~~~g~t~aq~ALawvl~~~~v~~~I~Ga~~~~qL~en~~A~~~~L~~~~~~~l~~ 306 (316)
T COG0667 227 SELPRFQRELTERGLAILRALEELAKELGATPAQVALAWVLAQPGVTSPIVGASKAEQLEENLAALDIKLSEEELAALDE 306 (316)
T ss_pred cccccchhhhhHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHhCCCCceEeecCCCHHHHHHHHHHhcCCCCHHHHHHHHH
Confidence 2 366667778889999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred hCCC
Q 018374 325 FVPI 328 (357)
Q Consensus 325 ~~~~ 328 (357)
....
T Consensus 307 ~~~~ 310 (316)
T COG0667 307 ISAE 310 (316)
T ss_pred Hhhh
Confidence 8654
No 2
>KOG1575 consensus Voltage-gated shaker-like K+ channel, subunit beta/KCNAB [Energy production and conversion]
Probab=100.00 E-value=2.9e-66 Score=475.35 Aligned_cols=318 Identities=45% Similarity=0.722 Sum_probs=284.0
Q ss_pred cCCCCCceecCCCCcccccceeccccccCCCCCCCCHHHHHHHHHHHHHcCCCeEeCccCcCCCchHHHHHHHHhcC--C
Q 018374 5 KKIQAPRVKLGTQGLEVSKLGFGCMGLTGMYNSPVSEEDGISIIKHAFNKGITFFDTADVYGAHANEVLVGKVLKQL--P 82 (357)
Q Consensus 5 ~~~~m~~~~lg~tg~~vs~lglG~~~~g~~~~~~~~~~~~~~~l~~A~~~Gin~~DtA~~Yg~g~sE~~lG~al~~~--~ 82 (357)
....|+++++|++|++||++|||||.+.. |+...+++++++++++|+|+|+||||||++||.|.||+++|++|++. +
T Consensus 8 ~~~~~~~~~lg~~gl~Vs~lglG~m~~~~-~~~~~~~e~a~~~m~~a~e~Gin~fDtAe~Yg~~~~E~llg~~i~~~~~~ 86 (336)
T KOG1575|consen 8 TELGMLRRKLGNSGLKVSPLGLGCMGWTT-FGGQIDKEEAFELLDHAYEAGINFFDTAEVYGNGQSEELLGEFIKSRGWR 86 (336)
T ss_pred chhcceeeeccCCCceecceeecceeeec-cccCCCHHHHHHHHHHHHHcCCCEEehhhhcCCcccHHHHHHHHHhcCCc
Confidence 45669999999999999999999985544 44446999999999999999999999999999999999999999995 7
Q ss_pred CCCeEEEeeeeeccCCCcccccCCCHHHHHHHHHHHHhHhCCCcccEEEeecCCCCCCccccccCCCChhHHHHHHHHHH
Q 018374 83 RKKIQLASKFGVVSMAPTSVIVKGTPEYVRSCCEASLKRLGVDYIDLYYQHRVDPSVPIEDTVCDSLPTSLNIGELKMLV 162 (357)
Q Consensus 83 R~~~~I~tK~~~~~~~~~~~~~~~~~~~i~~~v~~sL~~Lg~d~iDl~~lH~pd~~~~~~~~~~~~~~~~~~~~aL~~L~ 162 (357)
|++++|+||++.... +...+..++.++.+.++.|++|||++|||+||+||+|+..+++++ +++|.+++
T Consensus 87 R~~vviaTK~~~~~~--~~~~~G~~~~~i~~~~~~s~~rl~~~~IDl~q~Hr~D~~~piee~----------m~aL~~lv 154 (336)
T KOG1575|consen 87 RDKVVIATKFGFDYG--GETPRGLSRKHIIEGVRDSLRRLQTDYIDLLQVHRWDPMVPIEET----------MRALTDLV 154 (336)
T ss_pred CCcEEEEEEEeccCC--CcCCCCCcHHHHHHHHHHHHHhcCCCeeEEEEEcccCCCCCHHHH----------HHHHHHHH
Confidence 999999999998762 222457899999999999999999999999999999999999988 99999999
Q ss_pred HcCccceEecCCCCHHHHHHHhccCC--ceEEeccccccccch-hhhHHHHHHHhCCceeecccCccccCCCC-CcCCCC
Q 018374 163 VEGKIKYIGLSEASPDTIRRAHAVHP--ITAVQMEWSLLTRDI-EEEIIPLCRELGIGIVPYSPLGRGLLGGK-AVVESL 238 (357)
Q Consensus 163 ~~G~ir~iGvS~~~~~~l~~~~~~~~--~~~~q~~~n~~~~~~-~~~~~~~~~~~gi~v~a~spl~~G~L~g~-~~~~~~ 238 (357)
++|+||+||+|+++.+++.+++...+ +.++|++||++.++. +.+++++|+++||++++||||++|+|+|+ ...++.
T Consensus 155 e~Gki~yiGlSe~sa~~I~~a~~~~~~p~~s~Q~eysl~~Rd~ee~~i~~~c~~~Gi~li~ysPL~~G~Ltgk~~~~e~~ 234 (336)
T KOG1575|consen 155 EQGKIRYWGLSEWSAEEIREAHAVAPIPIVAVQVEYSLLSRDKEERGIIPLCRELGIGLIAWSPLGRGLLTGKYKLGEDS 234 (336)
T ss_pred hcCceEEEEeccCCHHHHHHHHHhcCCCceEeeeechhhhcchhhhhHHHHHHHcCcceEEecccccceeccCccccccc
Confidence 99999999999999999999999887 999999999999984 46799999999999999999999999999 444555
Q ss_pred CCCccccc----CCCCCCCcchhhHHHHHHHHHHHHhcCCChHHHHHHHHHhCCCCeEEecCCCCHHHHHHHHhccCCCC
Q 018374 239 PANSFLIS----HPRFTGENLGKNKQIYARVENLAKRNKCTPAQLSLAWLLRQGDDIVPIPGTTKIKNLDENIGSLMMKL 314 (357)
Q Consensus 239 ~~~~~~~~----~~~~~~~~~~~~~~~~~~l~~ia~~~g~s~~q~al~~~l~~~~v~~~ivG~~~~~~l~enl~a~~~~L 314 (357)
+..+.+.. .+.+..+ ..++..++++.++|+++|+|++|+||+|+++++.+++||||+++++||+||++|++..|
T Consensus 235 ~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~iA~k~g~T~~qlALawv~~~~~v~~pIpG~s~ve~l~eni~Al~~~L 312 (336)
T KOG1575|consen 235 RNGDKRFQFLGLSPQTEEG--DKQKPILEALSKIAEKHGCTVPQLALAWVLSNGKVSSPIPGASKIEQLKENIGALSVKL 312 (336)
T ss_pred ccccccccccccccccchh--hhHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhCCCEEecCCCCcHHHHHHHHhhhhccC
Confidence 55544332 2333322 56789999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHhhCCCCccCCCCCC
Q 018374 315 TKEDMKEILNFVPIEEVAGDRTY 337 (357)
Q Consensus 315 ~~~~~~~i~~~~~~~~~~~~~~~ 337 (357)
+++++.+|+++.......++++.
T Consensus 313 t~e~~~~l~~~~~~~~~~~~~~~ 335 (336)
T KOG1575|consen 313 TPEEIKELEEIIDKILGFGPRSI 335 (336)
T ss_pred CHHHHHHHHHhhccccCcCCCCC
Confidence 99999999999998887777764
No 3
>TIGR01293 Kv_beta voltage-dependent potassium channel beta subunit, animal. Plant beta subunits and their closely related bacterial homologs (in Deinococcus radiudurans, Xylella fastidiosa, etc.) appear more closely related to each other than to animal forms. However, the bacterial species lack convincing counterparts the Kv alpha subunit and the Kv beta homolog may serve as an enzyme. Cutoffs are set for this model such that yeast and plant forms and bacterial close homologs score between trusted and noise cutoffs.
Probab=100.00 E-value=4.8e-61 Score=452.43 Aligned_cols=299 Identities=30% Similarity=0.470 Sum_probs=250.4
Q ss_pred ceecCCCCcccccceeccccccCCCCCCCCHHHHHHHHHHHHHcCCCeEeCccCcCCCchHHHHHHHHhcC--CCCCeEE
Q 018374 11 RVKLGTQGLEVSKLGFGCMGLTGMYNSPVSEEDGISIIKHAFNKGITFFDTADVYGAHANEVLVGKVLKQL--PRKKIQL 88 (357)
Q Consensus 11 ~~~lg~tg~~vs~lglG~~~~g~~~~~~~~~~~~~~~l~~A~~~Gin~~DtA~~Yg~g~sE~~lG~al~~~--~R~~~~I 88 (357)
|++||++|++||+||||||.+ +|...+.+++.++|+.|+++|||+||||+.||.|.||+++|++|+.. +|++++|
T Consensus 1 ~r~lg~tg~~vs~lglGt~~~---~g~~~~~~~a~~~l~~al~~Gi~~~DTA~~Yg~g~sE~~lG~~l~~~~~~R~~~~i 77 (317)
T TIGR01293 1 YRNLGKSGLRVSCLGLGTWVT---FGGQISDEMAEQLLTLAYENGINLFDTAEVYAAGKAEVVLGNILKKKGWRRSSYVI 77 (317)
T ss_pred CcccCCCCCeecceeecCCcc---CCCCCCHHHHHHHHHHHHHcCCCeEECccccCCCccHHHHHHHHHhcCCCcccEEE
Confidence 578999999999999999974 23334788999999999999999999999999999999999999863 6999999
Q ss_pred EeeeeeccCCCcccccCCCHHHHHHHHHHHHhHhCCCcccEEEeecCCCCCCccccccCCCChhHHHHHHHHHHHcCccc
Q 018374 89 ASKFGVVSMAPTSVIVKGTPEYVRSCCEASLKRLGVDYIDLYYQHRVDPSVPIEDTVCDSLPTSLNIGELKMLVVEGKIK 168 (357)
Q Consensus 89 ~tK~~~~~~~~~~~~~~~~~~~i~~~v~~sL~~Lg~d~iDl~~lH~pd~~~~~~~~~~~~~~~~~~~~aL~~L~~~G~ir 168 (357)
+||++...... ...+++++.+++++++||+|||+||||+|++|||++..+++++ |++|++|+++|+||
T Consensus 78 aTK~~~~~~~~--~~~~~~~~~i~~~~~~SL~rL~td~iDl~~lH~~~~~~~~~e~----------~~aL~~l~~~G~ir 145 (317)
T TIGR01293 78 TTKIFWGGKAE--TERGLSRKHIIEGLKASLERLQLEYVDIVFANRPDPNTPMEET----------VRAMTYVINQGMAM 145 (317)
T ss_pred EeeeccCCCCC--CCCCCCHHHHHHHHHHHHHHhCCCcEeEEEeccCCCCCCHHHH----------HHHHHHHHHcCCee
Confidence 99986431110 1135689999999999999999999999999999887666666 99999999999999
Q ss_pred eEecCCCCHHHHHHHhcc------CCceEEeccccccccch-hhhHHHHHHHhCCceeecccCccccCCCCCcCCCCCCC
Q 018374 169 YIGLSEASPDTIRRAHAV------HPITAVQMEWSLLTRDI-EEEIIPLCRELGIGIVPYSPLGRGLLGGKAVVESLPAN 241 (357)
Q Consensus 169 ~iGvS~~~~~~l~~~~~~------~~~~~~q~~~n~~~~~~-~~~~~~~~~~~gi~v~a~spl~~G~L~g~~~~~~~~~~ 241 (357)
+||+|||+.++++++... .+++++|++||++++.. +.+++++|+++||++++|+||++|+|++++... .+..
T Consensus 146 ~iGvSn~~~~~l~~~~~~~~~~~~~~~~~~Q~~~~l~~r~~~e~~l~~~~~~~gi~v~a~spl~~G~Ltg~~~~~-~~~~ 224 (317)
T TIGR01293 146 YWGTSRWSSMEIMEAYSVARQFNLIPPICEQAEYHMFQREKVEVQLPELYHKIGVGAMTWSPLACGLVSGKYDSG-IPPY 224 (317)
T ss_pred EEEecCCCHHHHHHHHHHHHHcCCCCcceeccccChHhcchhHHHHHHHHHHcCCeEEEeccccccccCCCCCCC-CCCc
Confidence 999999999998776432 46789999999999863 568999999999999999999999999984322 2221
Q ss_pred cccccCCC---CC----CCcchhhHHHHHHHHHHHHhcCCChHHHHHHHHHhCCCCeEEecCCCCHHHHHHHHhccCC--
Q 018374 242 SFLISHPR---FT----GENLGKNKQIYARVENLAKRNKCTPAQLSLAWLLRQGDDIVPIPGTTKIKNLDENIGSLMM-- 312 (357)
Q Consensus 242 ~~~~~~~~---~~----~~~~~~~~~~~~~l~~ia~~~g~s~~q~al~~~l~~~~v~~~ivG~~~~~~l~enl~a~~~-- 312 (357)
. +...+. +. .+........++.++++|+++|+|++|+||+|++++|+|+++|+|+++++||++|+++++.
T Consensus 225 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ia~~~g~s~aqlal~w~l~~~~v~~~i~G~~~~~ql~en~~a~~~~~ 303 (317)
T TIGR01293 225 S-RATLKGYQWLKDKILSEEGRRQQARLKDLQAIAERLGCTLPQLAIAWCLRNEGVSSVLLGASSAEQLMENLGSLQVLP 303 (317)
T ss_pred c-cccccccchhhhhhcchhhHHHHHHHHHHHHHHHHHCcCHHHHHHHHHhcCCCCeEEEeCCCCHHHHHHHHHHhhccC
Confidence 1 111111 11 1112235667789999999999999999999999999999999999999999999999987
Q ss_pred CCCHHHHHHHHhhC
Q 018374 313 KLTKEDMKEILNFV 326 (357)
Q Consensus 313 ~L~~~~~~~i~~~~ 326 (357)
+|++++++.|++++
T Consensus 304 ~Ls~e~~~~l~~~~ 317 (317)
T TIGR01293 304 KLSSSIIHEIDSIL 317 (317)
T ss_pred CCCHHHHHHHHhhC
Confidence 99999999998763
No 4
>PRK10625 tas putative aldo-keto reductase; Provisional
Probab=100.00 E-value=9.2e-61 Score=455.76 Aligned_cols=316 Identities=28% Similarity=0.356 Sum_probs=255.5
Q ss_pred CCceecCCCCcccccceeccccccCCCCCCCCHHHHHHHHHHHHHcCCCeEeCccCcC-------CCchHHHHHHHHhcC
Q 018374 9 APRVKLGTQGLEVSKLGFGCMGLTGMYNSPVSEEDGISIIKHAFNKGITFFDTADVYG-------AHANEVLVGKVLKQL 81 (357)
Q Consensus 9 m~~~~lg~tg~~vs~lglG~~~~g~~~~~~~~~~~~~~~l~~A~~~Gin~~DtA~~Yg-------~g~sE~~lG~al~~~ 81 (357)
|++++||+||+.||+||||||.+|+ ..+.+++.++|+.|+++|||+||||+.|| .|.||..+|++|++.
T Consensus 1 m~~r~lg~t~~~vs~iglGt~~~g~----~~~~~~a~~~l~~al~~Gi~~~DTA~~Yg~~~~~~~~g~sE~~iG~aL~~~ 76 (346)
T PRK10625 1 MQYHRIPHSSLEVSTLGLGTMTFGE----QNSEADAHAQLDYAVAQGINLIDVAEMYPVPPRPETQGLTETYIGNWLAKR 76 (346)
T ss_pred CCceecCCCCCccccEeEeccccCC----CCCHHHHHHHHHHHHHcCCCEEECccccCCCcCCCCCCchHHHHHHHHhhc
Confidence 7899999999999999999999874 23678999999999999999999999998 489999999999864
Q ss_pred -CCCCeEEEeeeeeccCCCcc---cccCCCHHHHHHHHHHHHhHhCCCcccEEEeecCCCCCCc-ccccc------CCCC
Q 018374 82 -PRKKIQLASKFGVVSMAPTS---VIVKGTPEYVRSCCEASLKRLGVDYIDLYYQHRVDPSVPI-EDTVC------DSLP 150 (357)
Q Consensus 82 -~R~~~~I~tK~~~~~~~~~~---~~~~~~~~~i~~~v~~sL~~Lg~d~iDl~~lH~pd~~~~~-~~~~~------~~~~ 150 (357)
.|++++|+||++......+. ...+++++.+++++++||+|||+||||+|+||||++.... .+..+ ....
T Consensus 77 ~~R~~v~i~TK~~~~~~~~~~~~~~~~~~s~~~i~~~~e~SL~rL~~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~ 156 (346)
T PRK10625 77 GSREKLIIASKVSGPSRNNDKGIRPNQALDRKNIREALHDSLKRLQTDYLDLYQVHWPQRPTNCFGKLGYSWTDSAPAVS 156 (346)
T ss_pred CCcceEEEEcccccCCcCCCCCcCCCCCCCHHHHHHHHHHHHHHhCCCeEeEEEeeccCcccccccccccccccccCCCC
Confidence 69999999999642211000 0125689999999999999999999999999999753110 00000 0124
Q ss_pred hhHHHHHHHHHHHcCccceEecCCCCHHHHHHHhcc------CCceEEeccccccccchhhhHHHHHHHhCCceeecccC
Q 018374 151 TSLNIGELKMLVVEGKIKYIGLSEASPDTIRRAHAV------HPITAVQMEWSLLTRDIEEEIIPLCRELGIGIVPYSPL 224 (357)
Q Consensus 151 ~~~~~~aL~~L~~~G~ir~iGvS~~~~~~l~~~~~~------~~~~~~q~~~n~~~~~~~~~~~~~~~~~gi~v~a~spl 224 (357)
+.++|++|++|+++|+||+||+|||+.+.+++++.. ..+.++|++||++++..+.+++++|+++||++++|+||
T Consensus 157 ~~e~~~aL~~l~~~GkIr~iGvSn~~~~~l~~~~~~~~~~~~~~~~~~q~~y~l~~r~~~~~ll~~~~~~gi~via~spL 236 (346)
T PRK10625 157 LLETLDALAEQQRAGKIRYIGVSNETAFGVMRYLHLAEKHDLPRIVTIQNPYSLLNRSFEVGLAEVSQYEGVELLAYSCL 236 (346)
T ss_pred HHHHHHHHHHHHHCCCeEEEEecCCCHHHHHHHHHHHHHcCCCCcEEecCCCCcccccchhHHHHHHHHcCCeEEEeccc
Confidence 567799999999999999999999999988776532 35788999999999876678999999999999999999
Q ss_pred ccccCCCCCcCCCCCCCcccccCCCCCCCcchhhHHHHHHHHHHHHhcCCChHHHHHHHHHhCCCCeEEecCCCCHHHHH
Q 018374 225 GRGLLGGKAVVESLPANSFLISHPRFTGENLGKNKQIYARVENLAKRNKCTPAQLSLAWLLRQGDDIVPIPGTTKIKNLD 304 (357)
Q Consensus 225 ~~G~L~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ia~~~g~s~~q~al~~~l~~~~v~~~ivG~~~~~~l~ 304 (357)
++|+|++++.....+........+.|.+..........+.++++|+++|+|++|+||+|++++|.|+++|+|+++++||+
T Consensus 237 ~~G~Ltg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~~g~t~aqval~w~l~~~~v~~~I~G~~~~~~l~ 316 (346)
T PRK10625 237 AFGTLTGKYLNGAKPAGARNTLFSRFTRYSGEQTQKAVAAYVDIAKRHGLDPAQMALAFVRRQPFVASTLLGATTMEQLK 316 (346)
T ss_pred cCeeccCCCCCCCCCCCcccccccccccccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHhCCCCeeEEeCCCCHHHHH
Confidence 99999998433222221110111122222223456778899999999999999999999999999999999999999999
Q ss_pred HHHhccCCCCCHHHHHHHHhhCCC
Q 018374 305 ENIGSLMMKLTKEDMKEILNFVPI 328 (357)
Q Consensus 305 enl~a~~~~L~~~~~~~i~~~~~~ 328 (357)
+|+++++++|++++++.|+++...
T Consensus 317 en~~a~~~~L~~~~~~~l~~~~~~ 340 (346)
T PRK10625 317 TNIESLHLTLSEEVLAEIEAVHQV 340 (346)
T ss_pred HHHhhccCCCCHHHHHHHHHHHhh
Confidence 999999999999999999998653
No 5
>PRK09912 L-glyceraldehyde 3-phosphate reductase; Provisional
Probab=100.00 E-value=1.7e-60 Score=453.29 Aligned_cols=310 Identities=27% Similarity=0.474 Sum_probs=256.0
Q ss_pred CcCCCCCceecCCCCcccccceeccccccCCCCCCCCHHHHHHHHHHHHHcCCCeEeCccCcCC--CchHHHHHHHHhcC
Q 018374 4 DKKIQAPRVKLGTQGLEVSKLGFGCMGLTGMYNSPVSEEDGISIIKHAFNKGITFFDTADVYGA--HANEVLVGKVLKQL 81 (357)
Q Consensus 4 ~~~~~m~~~~lg~tg~~vs~lglG~~~~g~~~~~~~~~~~~~~~l~~A~~~Gin~~DtA~~Yg~--g~sE~~lG~al~~~ 81 (357)
.....|++++||++|++||+||||||.. +|...+.+++.++|+.|+++|||+||||+.||. |.||+.+|++|++.
T Consensus 8 ~~~~~m~~r~lg~tg~~vs~lglG~~~~---~g~~~~~~~~~~~l~~A~~~Gin~~DTA~~YG~~~g~sE~~lG~~l~~~ 84 (346)
T PRK09912 8 ERYGQMQYRYCGKSGLRLPALSLGLWHN---FGHVNALESQRAILRKAFDLGITHFDLANNYGPPPGSAEENFGRLLRED 84 (346)
T ss_pred CCCCCcceeecCCCCcccccccccCccc---cCCCCCHHHHHHHHHHHHHCCCCEEEChhhhCCCCCCcHHHHHHHHHhc
Confidence 3556699999999999999999999972 333336778899999999999999999999994 89999999999863
Q ss_pred ---CCCCeEEEeeeeeccCCCcccccCCCHHHHHHHHHHHHhHhCCCcccEEEeecCCCCCCccccccCCCChhHHHHHH
Q 018374 82 ---PRKKIQLASKFGVVSMAPTSVIVKGTPEYVRSCCEASLKRLGVDYIDLYYQHRVDPSVPIEDTVCDSLPTSLNIGEL 158 (357)
Q Consensus 82 ---~R~~~~I~tK~~~~~~~~~~~~~~~~~~~i~~~v~~sL~~Lg~d~iDl~~lH~pd~~~~~~~~~~~~~~~~~~~~aL 158 (357)
.|++++|+||+|...... ....+.+++.+++++++||+|||+||||+|+||||++..+.+++ |++|
T Consensus 85 ~~~~Rd~~~I~TK~g~~~~~~-~~~~~~s~~~i~~~~e~SL~rLg~d~iDl~~lH~~~~~~~~~e~----------~~al 153 (346)
T PRK09912 85 FAAYRDELIISTKAGYDMWPG-PYGSGGSRKYLLASLDQSLKRMGLEYVDIFYSHRVDENTPMEET----------ASAL 153 (346)
T ss_pred ccCCCCeEEEEEEecccCCCC-cCCCCCCHHHHHHHHHHHHHHHCCCcEEEEEeCCCCCCCCHHHH----------HHHH
Confidence 599999999998531111 11124689999999999999999999999999999877666666 9999
Q ss_pred HHHHHcCccceEecCCCCHHHHHHHhcc-----CCceEEeccccccccchh-hhHHHHHHHhCCceeecccCccccCCCC
Q 018374 159 KMLVVEGKIKYIGLSEASPDTIRRAHAV-----HPITAVQMEWSLLTRDIE-EEIIPLCRELGIGIVPYSPLGRGLLGGK 232 (357)
Q Consensus 159 ~~L~~~G~ir~iGvS~~~~~~l~~~~~~-----~~~~~~q~~~n~~~~~~~-~~~~~~~~~~gi~v~a~spl~~G~L~g~ 232 (357)
++|+++|+||+||||||++++++++.+. .+++++|++||++++..+ .+++++|+++||++++|+||++|+|+++
T Consensus 154 ~~l~~~GkIr~iGvSn~~~~~~~~~~~~~~~~~~~~~~~Q~~ynll~~~~~~~~ll~~~~~~gI~via~spl~~G~Lt~~ 233 (346)
T PRK09912 154 AHAVQSGKALYVGISSYSPERTQKMVELLREWKIPLLIHQPSYNLLNRWVDKSGLLDTLQNNGVGCIAFTPLAQGLLTGK 233 (346)
T ss_pred HHHHHcCCeeEEEecCCCHHHHHHHHHHHHhcCCCcEEeeccCCceecccchhhHHHHHHHcCceEEEehhhcCccccCC
Confidence 9999999999999999999988765542 367899999999998644 4799999999999999999999999997
Q ss_pred CcCCCCCCCcccc----cCCCCCCCcc-hhhHHHHHHHHHHHHhcCCChHHHHHHHHHhCCCCeEEecCCCCHHHHHHHH
Q 018374 233 AVVESLPANSFLI----SHPRFTGENL-GKNKQIYARVENLAKRNKCTPAQLSLAWLLRQGDDIVPIPGTTKIKNLDENI 307 (357)
Q Consensus 233 ~~~~~~~~~~~~~----~~~~~~~~~~-~~~~~~~~~l~~ia~~~g~s~~q~al~~~l~~~~v~~~ivG~~~~~~l~enl 307 (357)
+... .+...... ..+.|.+..+ +..+...+.++++|+++|+|++|+||+|++++|.|+++|||+++++||++|+
T Consensus 234 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~g~t~aq~AL~w~l~~~~v~~~i~G~~~~~ql~en~ 312 (346)
T PRK09912 234 YLNG-IPQDSRMHREGNKVRGLTPKMLTEANLNSLRLLNEMAQQRGQSMAQMALSWLLKDERVTSVLIGASRAEQLEENV 312 (346)
T ss_pred CCCC-CCCCccccccccchhhhchhhccHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHhCCCCeEEEeCCCCHHHHHHHH
Confidence 4322 12111000 0111222211 3346677899999999999999999999999999999999999999999999
Q ss_pred hcc-CCCCCHHHHHHHHhhCCC
Q 018374 308 GSL-MMKLTKEDMKEILNFVPI 328 (357)
Q Consensus 308 ~a~-~~~L~~~~~~~i~~~~~~ 328 (357)
+++ ..+|++++++.|+++.+.
T Consensus 313 ~a~~~~~L~~e~~~~l~~~~~~ 334 (346)
T PRK09912 313 QALNNLTFSTEELAQIDQHIAD 334 (346)
T ss_pred hhhcCCCCCHHHHHHHHHhhCc
Confidence 999 479999999999998755
No 6
>COG0656 ARA1 Aldo/keto reductases, related to diketogulonate reductase [General function prediction only]
Probab=100.00 E-value=1.9e-59 Score=422.92 Aligned_cols=260 Identities=30% Similarity=0.500 Sum_probs=230.3
Q ss_pred CCceecCCCCcccccceeccccccCCCCCCCCHHHHHHHHHHHHHcCCCeEeCccCcCCCchHHHHHHHHhcC--CCCCe
Q 018374 9 APRVKLGTQGLEVSKLGFGCMGLTGMYNSPVSEEDGISIIKHAFNKGITFFDTADVYGAHANEVLVGKVLKQL--PRKKI 86 (357)
Q Consensus 9 m~~~~lg~tg~~vs~lglG~~~~g~~~~~~~~~~~~~~~l~~A~~~Gin~~DtA~~Yg~g~sE~~lG~al~~~--~R~~~ 86 (357)
|.+.+| ++|.+||.||||||+++. .....+.+..|++.|+|+||||..|| +|+.+|+++++. +|+++
T Consensus 3 ~~~~~l-~~g~~iP~iGlGt~~~~~-------~~~~~~av~~Al~~Gyr~IDTA~~Yg---nE~~VG~aI~~s~v~Reel 71 (280)
T COG0656 3 KTKVTL-NNGVEIPAIGLGTWQIGD-------DEWAVRAVRAALELGYRLIDTAEIYG---NEEEVGEAIKESGVPREEL 71 (280)
T ss_pred Cceeec-CCCCcccCcceEeeecCC-------chhHHHHHHHHHHhCcceEecHhHhc---CHHHHHHHHHhcCCCHHHe
Confidence 445677 677889999999999753 23389999999999999999999999 999999999984 89999
Q ss_pred EEEeeeeeccCCCcccccCCCHHHHHHHHHHHHhHhCCCcccEEEeecCCCCCCccccccCCCChhHHHHHHHHHHHcCc
Q 018374 87 QLASKFGVVSMAPTSVIVKGTPEYVRSCCEASLKRLGVDYIDLYYQHRVDPSVPIEDTVCDSLPTSLNIGELKMLVVEGK 166 (357)
Q Consensus 87 ~I~tK~~~~~~~~~~~~~~~~~~~i~~~v~~sL~~Lg~d~iDl~~lH~pd~~~~~~~~~~~~~~~~~~~~aL~~L~~~G~ 166 (357)
||+||++.. +.+++.+.+++++||+|||+||+|||+||||.+. ... .+.++|++|++++++|+
T Consensus 72 FittKvw~~---------~~~~~~~~~a~e~Sl~rLg~dyvDLyLiHwP~~~-~~~-------~~~etw~alE~l~~~G~ 134 (280)
T COG0656 72 FITTKVWPS---------DLGYDETLKALEASLKRLGLDYVDLYLIHWPVPN-KYV-------VIEETWKALEELVDEGL 134 (280)
T ss_pred EEEeecCCc---------cCCcchHHHHHHHHHHHhCCCceeEEEECCCCCc-cCc-------cHHHHHHHHHHHHhcCC
Confidence 999999876 5578999999999999999999999999999763 111 02344999999999999
Q ss_pred cceEecCCCCHHHHHHHhccC--CceEEeccccccccchhhhHHHHHHHhCCceeecccCcccc-CCCCCcCCCCCCCcc
Q 018374 167 IKYIGLSEASPDTIRRAHAVH--PITAVQMEWSLLTRDIEEEIIPLCRELGIGIVPYSPLGRGL-LGGKAVVESLPANSF 243 (357)
Q Consensus 167 ir~iGvS~~~~~~l~~~~~~~--~~~~~q~~~n~~~~~~~~~~~~~~~~~gi~v~a~spl~~G~-L~g~~~~~~~~~~~~ 243 (357)
||+||||||+.++|+++++.. .++++|++||++.++. +++++|+++||.+++||||+.|. |...
T Consensus 135 ir~IGVSNF~~~~L~~l~~~~~~~p~~NQIe~hp~~~q~--el~~~~~~~gI~v~AysPL~~g~~l~~~----------- 201 (280)
T COG0656 135 IRAIGVSNFGVEHLEELLSLAKVKPAVNQIEYHPYLRQP--ELLPFCQRHGIAVEAYSPLAKGGKLLDN----------- 201 (280)
T ss_pred ccEEEeeCCCHHHHHHHHHhcCCCCceEEEEeccCCCcH--HHHHHHHHcCCEEEEECCcccccccccC-----------
Confidence 999999999999999998874 4789999999999964 59999999999999999999654 3211
Q ss_pred cccCCCCCCCcchhhHHHHHHHHHHHHhcCCChHHHHHHHHHhCCCCeEEecCCCCHHHHHHHHhccCCCCCHHHHHHHH
Q 018374 244 LISHPRFTGENLGKNKQIYARVENLAKRNKCTPAQLSLAWLLRQGDDIVPIPGTTKIKNLDENIGSLMMKLTKEDMKEIL 323 (357)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~l~~ia~~~g~s~~q~al~~~l~~~~v~~~ivG~~~~~~l~enl~a~~~~L~~~~~~~i~ 323 (357)
+.+.+||++||.|++|++|+|+++++ +++||.+++++|+++|++++++.||++||+.|+
T Consensus 202 -------------------~~l~~Ia~k~g~t~AQv~L~W~i~~g--v~~Ipks~~~~ri~eN~~~~~f~Ls~ed~~~i~ 260 (280)
T COG0656 202 -------------------PVLAEIAKKYGKTPAQVALRWHIQRG--VIVIPKSTTPERIRENLAAFDFELSEEDMAAID 260 (280)
T ss_pred -------------------hHHHHHHHHhCCCHHHHHHHHHHhCC--cEEecCCCCHHHHHHHHhhhcCCCCHHHHHHHH
Confidence 38999999999999999999999999 899999999999999999999999999999999
Q ss_pred hhCCCCc
Q 018374 324 NFVPIEE 330 (357)
Q Consensus 324 ~~~~~~~ 330 (357)
++.....
T Consensus 261 ~l~~~~~ 267 (280)
T COG0656 261 ALDRGYG 267 (280)
T ss_pred hhccccC
Confidence 9987653
No 7
>PLN02587 L-galactose dehydrogenase
Probab=100.00 E-value=1.5e-58 Score=435.11 Aligned_cols=290 Identities=27% Similarity=0.441 Sum_probs=244.8
Q ss_pred ceecCCCCcccccceeccccccCCCCCCCCHHHHHHHHHHHHHcCCCeEeCccCcCCCchHHHHHHHHhcC--CCCCeEE
Q 018374 11 RVKLGTQGLEVSKLGFGCMGLTGMYNSPVSEEDGISIIKHAFNKGITFFDTADVYGAHANEVLVGKVLKQL--PRKKIQL 88 (357)
Q Consensus 11 ~~~lg~tg~~vs~lglG~~~~g~~~~~~~~~~~~~~~l~~A~~~Gin~~DtA~~Yg~g~sE~~lG~al~~~--~R~~~~I 88 (357)
||+||+||++||+||||||++|+.|+. ++.+++.++++.|+++|||+||||+.||+|.||+.+|++|++. +|++++|
T Consensus 1 ~r~lg~t~~~vs~lglG~~~~g~~~~~-~~~~~~~~~l~~A~~~Gin~~DTA~~Yg~g~sE~~lG~al~~~~~~R~~v~I 79 (314)
T PLN02587 1 LRELGSTGLKVSSVGFGASPLGSVFGP-VSEEDAIASVREAFRLGINFFDTSPYYGGTLSEKVLGKALKALGIPREKYVV 79 (314)
T ss_pred CCcCCCCCCcccCcccccccccCCCCC-CCHHHHHHHHHHHHHcCCCEEECcCccCCCchHHHHHHHHHhCCCCcceEEE
Confidence 578999999999999999999876664 4788999999999999999999999999999999999999874 6999999
Q ss_pred EeeeeeccCCCcccccCCCHHHHHHHHHHHHhHhCCCcccEEEeecCCCCCCccccccCCCChhHHHHHHHHHHHcCccc
Q 018374 89 ASKFGVVSMAPTSVIVKGTPEYVRSCCEASLKRLGVDYIDLYYQHRVDPSVPIEDTVCDSLPTSLNIGELKMLVVEGKIK 168 (357)
Q Consensus 89 ~tK~~~~~~~~~~~~~~~~~~~i~~~v~~sL~~Lg~d~iDl~~lH~pd~~~~~~~~~~~~~~~~~~~~aL~~L~~~G~ir 168 (357)
+||++..... .+++++.+++++++||++||+||||+|+||||+.... . ....++|++|++|+++||||
T Consensus 80 ~TK~~~~~~~-----~~~~~~~i~~~~e~SL~rL~~d~iDl~~lH~~~~~~~-~------~~~~~~~~~l~~l~~~Gkir 147 (314)
T PLN02587 80 STKCGRYGEG-----FDFSAERVTKSVDESLARLQLDYVDILHCHDIEFGSL-D------QIVNETIPALQKLKESGKVR 147 (314)
T ss_pred EeccccCCCC-----CCCCHHHHHHHHHHHHHHhCCCCeeEEEecCCCCcch-h------hhHHHHHHHHHHHHHCCCeE
Confidence 9999853211 2568999999999999999999999999999974211 0 01234599999999999999
Q ss_pred eEecCCCCHHHHHHHhcc---C--CceEEeccccccccchhhhHHHHHHHhCCceeecccCccccCCCCCcCCCCCCCcc
Q 018374 169 YIGLSEASPDTIRRAHAV---H--PITAVQMEWSLLTRDIEEEIIPLCRELGIGIVPYSPLGRGLLGGKAVVESLPANSF 243 (357)
Q Consensus 169 ~iGvS~~~~~~l~~~~~~---~--~~~~~q~~~n~~~~~~~~~~~~~~~~~gi~v~a~spl~~G~L~g~~~~~~~~~~~~ 243 (357)
+||+|||++++++.++.. . .+..+|++||+.++.. .+++++|+++||++++|+||++|+|+++..+.
T Consensus 148 ~iGvSn~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~ll~~~~~~gi~v~a~spl~~G~L~~~~~~~------- 219 (314)
T PLN02587 148 FIGITGLPLAIFTYVLDRVPPGTVDVILSYCHYSLNDSSL-EDLLPYLKSKGVGVISASPLAMGLLTENGPPE------- 219 (314)
T ss_pred EEEecCCCHHHHHHHHHhhhcCCCCeEEeccccCcchhhH-HHHHHHHHHcCceEEEechhhccccCCCCCCC-------
Confidence 999999999988776653 2 2334578999887643 48999999999999999999999999863111
Q ss_pred cccCCCCCCCcchhhHHHHHHHHHHHHhcCCChHHHHHHHHHhCCCCeEEecCCCCHHHHHHHHhccC----CCCCHHHH
Q 018374 244 LISHPRFTGENLGKNKQIYARVENLAKRNKCTPAQLSLAWLLRQGDDIVPIPGTTKIKNLDENIGSLM----MKLTKEDM 319 (357)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~l~~ia~~~g~s~~q~al~~~l~~~~v~~~ivG~~~~~~l~enl~a~~----~~L~~~~~ 319 (357)
+.+ ..+.....++.++++|+++++|++|+||+|++++|.|++||+|+++++||++|+++++ .+|+++++
T Consensus 220 ------~~~-~~~~~~~~~~~l~~~a~~~~~s~aq~al~~~l~~~~v~~~i~G~~~~~~l~~nl~a~~~~~~~~l~~~~~ 292 (314)
T PLN02587 220 ------WHP-APPELKSACAAAATHCKEKGKNISKLALQYSLSNKDISTTLVGMNSVQQVEENVAAATELETSGIDEELL 292 (314)
T ss_pred ------CCC-CCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHhCCCCeeEEecCCCHHHHHHHHHHHhhcccCCCCHHHH
Confidence 111 1134566778899999999999999999999999999999999999999999999986 37999999
Q ss_pred HHHHhhCCC
Q 018374 320 KEILNFVPI 328 (357)
Q Consensus 320 ~~i~~~~~~ 328 (357)
++|+++...
T Consensus 293 ~~l~~~~~~ 301 (314)
T PLN02587 293 SEVEAILAP 301 (314)
T ss_pred HHHHHhhcc
Confidence 999998753
No 8
>cd06660 Aldo_ket_red Aldo-keto reductases (AKRs) are a superfamily of soluble NAD(P)(H) oxidoreductases whose chief purpose is to reduce aldehydes and ketones to primary and secondary alcohols. AKRs are present in all phyla and are of importance to both health and industrial applications. Members have very distinct functions and include the prokaryotic 2,5-diketo-D-gluconic acid reductases and beta-keto ester reductases, the eukaryotic aldose reductases, aldehyde reductases, hydroxysteroid dehydrogenases, steroid 5beta-reductases, potassium channel beta-subunits and aflatoxin aldehyde reductases, among others.
Probab=100.00 E-value=1.9e-56 Score=415.50 Aligned_cols=281 Identities=41% Similarity=0.692 Sum_probs=249.0
Q ss_pred ceecCCCCcccccceeccccccCCCCCCCCHHHHHHHHHHHHHcCCCeEeCccCcCCCchHHHHHHHHhcCC-CCCeEEE
Q 018374 11 RVKLGTQGLEVSKLGFGCMGLTGMYNSPVSEEDGISIIKHAFNKGITFFDTADVYGAHANEVLVGKVLKQLP-RKKIQLA 89 (357)
Q Consensus 11 ~~~lg~tg~~vs~lglG~~~~g~~~~~~~~~~~~~~~l~~A~~~Gin~~DtA~~Yg~g~sE~~lG~al~~~~-R~~~~I~ 89 (357)
+++||++|++||+|||||+.++..| .+.+++.++++.|++.|||+||||+.||.|.||+.+|++|++.. |++++|+
T Consensus 1 ~r~lg~tg~~vs~lg~G~~~~~~~~---~~~~~~~~~l~~A~~~Gi~~iDTA~~Yg~g~sE~~lG~al~~~~~R~~~~i~ 77 (285)
T cd06660 1 YRTLGKTGLKVSRLGLGTWQLGGGY---VDEEEAAAAVRAALDAGINFIDTADVYGDGESEELLGEALKERGPREEVFIA 77 (285)
T ss_pred CcccCCCCceecCcceeccccCCCC---CCHHHHHHHHHHHHHcCCCeEECccccCCCCCHHHHHHHHhccCCcCcEEEE
Confidence 4789999999999999999987655 37899999999999999999999999999999999999999864 9999999
Q ss_pred eeeeeccCCCcccccCCCHHHHHHHHHHHHhHhCCCcccEEEeecCCCCCC-ccccccCCCChhHHHHHHHHHHHcCccc
Q 018374 90 SKFGVVSMAPTSVIVKGTPEYVRSCCEASLKRLGVDYIDLYYQHRVDPSVP-IEDTVCDSLPTSLNIGELKMLVVEGKIK 168 (357)
Q Consensus 90 tK~~~~~~~~~~~~~~~~~~~i~~~v~~sL~~Lg~d~iDl~~lH~pd~~~~-~~~~~~~~~~~~~~~~aL~~L~~~G~ir 168 (357)
||++...... .+.+++.+++++++||++||+||||+|+||||+.... ..+ +|++|++++++|+||
T Consensus 78 tK~~~~~~~~----~~~~~~~~~~~l~~sL~~L~~~~iDl~~lh~~~~~~~~~~~----------~~~~l~~l~~~G~ir 143 (285)
T cd06660 78 TKVGPRPGDG----RDLSPEHIRRAVEESLKRLGTDYIDLYLLHWPDPDTPDIEE----------TLRALEELVKEGKIR 143 (285)
T ss_pred eeecCCCCCC----CCCCHHHHHHHHHHHHHHhCCCceeEEEecCCCCCCCCHHH----------HHHHHHHHHHcCCcc
Confidence 9998653211 3578999999999999999999999999999987554 344 499999999999999
Q ss_pred eEecCCCCHHHHHHHhcc--CCceEEeccccccccchhhhHHHHHHHhCCceeecccCccccCCCCCcCCCCCCCccccc
Q 018374 169 YIGLSEASPDTIRRAHAV--HPITAVQMEWSLLTRDIEEEIIPLCRELGIGIVPYSPLGRGLLGGKAVVESLPANSFLIS 246 (357)
Q Consensus 169 ~iGvS~~~~~~l~~~~~~--~~~~~~q~~~n~~~~~~~~~~~~~~~~~gi~v~a~spl~~G~L~g~~~~~~~~~~~~~~~ 246 (357)
+||+|||+.+.+.+++.. .+++++|++||++++....+++++|+++||++++|+||++|.|+++.......
T Consensus 144 ~iGvS~~~~~~l~~~~~~~~~~~~~~q~~~n~~~~~~~~~~~~~~~~~gi~v~~~~~l~~g~l~~~~~~~~~~------- 216 (285)
T cd06660 144 AIGVSNFSAEQLEEALAAAGVPPAVNQVEYNLLDRQAEEELLPYCREHGIGVIAYSPLAGGLLTGKYLPGAPP------- 216 (285)
T ss_pred EEEeeCCCHHHHHHHHHhhCCCceEEecccCcccCchHHHHHHHHHHcCcEEEEeccccCceecCCCCCCCCC-------
Confidence 999999999999999888 79999999999999976557999999999999999999999998763221110
Q ss_pred CCCCCCCcchhhHHHHHHHHHHHHhcCCChHHHHHHHHHhCCCCeEEecCCCCHHHHHHHHhccCCCCCHHHHHHHHhh
Q 018374 247 HPRFTGENLGKNKQIYARVENLAKRNKCTPAQLSLAWLLRQGDDIVPIPGTTKIKNLDENIGSLMMKLTKEDMKEILNF 325 (357)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~l~~ia~~~g~s~~q~al~~~l~~~~v~~~ivG~~~~~~l~enl~a~~~~L~~~~~~~i~~~ 325 (357)
........+..++++++++++|+|++|++++|.++++|+|+++++||++|++++..+|++++++.|+++
T Consensus 217 ----------~~~~~~~~~~~~~~~~~~s~~q~al~~~l~~p~~~~~i~g~~~~~~l~~n~~~~~~~L~~~~~~~l~~~ 285 (285)
T cd06660 217 ----------PEGDLLEALKEIAEKHGVTPAQVALRWLLQQPGVTSVIPGASSPERLEENLAALDFELSDEDLAALDAL 285 (285)
T ss_pred ----------ChhhHHHHHHHHHHHhCCCHHHHHHHHHhcCCCCeEEEeCCCCHHHHHHHHhhccCCCCHHHHHHHhhC
Confidence 011256789999999999999999999999999999999999999999999999999999999999763
No 9
>PRK10376 putative oxidoreductase; Provisional
Probab=100.00 E-value=1.3e-55 Score=410.30 Aligned_cols=277 Identities=27% Similarity=0.468 Sum_probs=236.1
Q ss_pred eecCCCCcccccceeccccccC--CCCCCCCHHHHHHHHHHHHHcCCCeEeCccCcCCCchHHHHHHHHhcCCCCCeEEE
Q 018374 12 VKLGTQGLEVSKLGFGCMGLTG--MYNSPVSEEDGISIIKHAFNKGITFFDTADVYGAHANEVLVGKVLKQLPRKKIQLA 89 (357)
Q Consensus 12 ~~lg~tg~~vs~lglG~~~~g~--~~~~~~~~~~~~~~l~~A~~~Gin~~DtA~~Yg~g~sE~~lG~al~~~~R~~~~I~ 89 (357)
.+|+ |++||+||||||++|+ .||...+.+++.++|+.|+++|||+||||..||+|.+|+.+|++++. .|++++|+
T Consensus 10 ~~l~--g~~vs~iglG~~~lg~~~~~g~~~~~~~~~~~l~~A~~~Gin~~DTA~~Yg~~~sE~~lg~~l~~-~R~~~~i~ 86 (290)
T PRK10376 10 FTLG--GRSVNRLGYGAMQLAGPGVFGPPKDRDAAIAVLREAVALGVNHIDTSDFYGPHVTNQLIREALHP-YPDDLTIV 86 (290)
T ss_pred eecC--CeeecccceeccccCCCCcCCCCCCHHHHHHHHHHHHHcCCCeEEChhhcCCCcHHHHHHHHHhc-CCCeEEEE
Confidence 4463 9999999999999985 36655578899999999999999999999999999999999999975 69999999
Q ss_pred eeeeeccCCCcccccCCCHHHHHHHHHHHHhHhCCCcccEEEeecCCC-CCCccccccCCCChhHHHHHHHHHHHcCccc
Q 018374 90 SKFGVVSMAPTSVIVKGTPEYVRSCCEASLKRLGVDYIDLYYQHRVDP-SVPIEDTVCDSLPTSLNIGELKMLVVEGKIK 168 (357)
Q Consensus 90 tK~~~~~~~~~~~~~~~~~~~i~~~v~~sL~~Lg~d~iDl~~lH~pd~-~~~~~~~~~~~~~~~~~~~aL~~L~~~G~ir 168 (357)
||++......+.+..+.+++.+++++++||+|||+||||+|++||++. ..+.. ....++|++|++|+++||||
T Consensus 87 TK~g~~~~~~~~~~~~~~~~~i~~~~e~SL~rL~td~iDl~~~H~~~~~h~p~~------~~~~~~~~~l~~l~~~Gkir 160 (290)
T PRK10376 87 TKVGARRGEDGSWLPAFSPAELRRAVHDNLRNLGLDVLDVVNLRLMGDGHGPAE------GSIEEPLTVLAELQRQGLVR 160 (290)
T ss_pred eeecccCCCCCccCCCCCHHHHHHHHHHHHHHhCCCeEEEEEEeccCCCCCCCC------CCHHHHHHHHHHHHHCCcee
Confidence 999764322111123578999999999999999999999999999632 11111 12445699999999999999
Q ss_pred eEecCCCCHHHHHHHhccCCceEEeccccccccchhhhHHHHHHHhCCceeecccCccccCCCCCcCCCCCCCcccccCC
Q 018374 169 YIGLSEASPDTIRRAHAVHPITAVQMEWSLLTRDIEEEIIPLCRELGIGIVPYSPLGRGLLGGKAVVESLPANSFLISHP 248 (357)
Q Consensus 169 ~iGvS~~~~~~l~~~~~~~~~~~~q~~~n~~~~~~~~~~~~~~~~~gi~v~a~spl~~G~L~g~~~~~~~~~~~~~~~~~ 248 (357)
+||+|||+.++++++.+..+++++|++||++++.. .+++++|+++||++++|+||+++..
T Consensus 161 ~iGvSn~~~~~l~~~~~~~~~~~~q~~~~~~~~~~-~~~~~~~~~~gi~v~a~~pL~g~~~------------------- 220 (290)
T PRK10376 161 HIGLSNVTPTQVAEARKIAEIVCVQNHYNLAHRAD-DALIDALARDGIAYVPFFPLGGFTP------------------- 220 (290)
T ss_pred EEEecCCCHHHHHHHHhhCCeEEEecccCCCcCCh-HHHHHHHHHcCCEEEEeecCCCCCh-------------------
Confidence 99999999999999998889999999999998753 5799999999999999999974210
Q ss_pred CCCCCcchhhHHHHHHHHHHHHhcCCChHHHHHHHHHhCCCCeEEecCCCCHHHHHHHHhccCCCCCHHHHHHHHhhCCC
Q 018374 249 RFTGENLGKNKQIYARVENLAKRNKCTPAQLSLAWLLRQGDDIVPIPGTTKIKNLDENIGSLMMKLTKEDMKEILNFVPI 328 (357)
Q Consensus 249 ~~~~~~~~~~~~~~~~l~~ia~~~g~s~~q~al~~~l~~~~v~~~ivG~~~~~~l~enl~a~~~~L~~~~~~~i~~~~~~ 328 (357)
...+.+.++|+++|+|++|+||+|+++++.++++|+|+++++|+++|+++++.+|++++++.|+++.++
T Consensus 221 -----------~~~~~l~~ia~~~~~t~aq~al~w~l~~~~~~~~i~G~~~~~~l~en~~a~~~~L~~e~~~~l~~~~~~ 289 (290)
T PRK10376 221 -----------LQSSTLSDVAASLGATPMQVALAWLLQRSPNILLIPGTSSVAHLRENLAAAELVLSEEVLAELDGIARE 289 (290)
T ss_pred -----------hhhHHHHHHHHHhCCCHHHHHHHHHHhCCCCeeEeeCCCCHHHHHHHHhhccCCCCHHHHHHHHHHHhc
Confidence 012578999999999999999999999877788999999999999999999999999999999987653
No 10
>PF00248 Aldo_ket_red: Aldo/keto reductase family; InterPro: IPR023210 The aldo-keto reductase family includes a number of related monomeric NADPH-dependent oxidoreductases, such as aldehyde reductase, aldose reductase, prostaglandin F synthase, xylose reductase, rho crystallin, and many others []. All possess a similar structure, with a beta-alpha-beta fold characteristic of nucleotide binding proteins []. The fold comprises a parallel beta-8/alpha-8-barrel, which contains a novel NADP-binding motif. The binding site is located in a large, deep, elliptical pocket in the C-terminal end of the beta sheet, the substrate being bound in an extended conformation. The hydrophobic nature of the pocket favours aromatic and apolar substrates over highly polar ones []. Binding of the NADPH coenzyme causes a massive conformational change, reorienting a loop, effectively locking the coenzyme in place. This binding is more similar to FAD- than to NAD(P)-binding oxidoreductases []. Some proteins of this entry contain a K+ ion channel beta chain regulatory domain; these are reported to have oxidoreductase activity []. This entry represents the NADP-dependent oxidoreductase domain found in these proteins.; PDB: 1C9W_A 4F40_B 1VBJ_A 1XGD_A 1X97_A 2ACS_A 1EF3_A 2ACU_A 1PWM_A 2NVD_A ....
Probab=100.00 E-value=5.6e-56 Score=411.97 Aligned_cols=277 Identities=37% Similarity=0.607 Sum_probs=232.7
Q ss_pred cceeccccccCCCCCCCCHHHHHHHHHHHHHcCCCeEeCccCcCCCchHHHHHHHHhc--CCCCCeEEEeeeeeccCCCc
Q 018374 23 KLGFGCMGLTGMYNSPVSEEDGISIIKHAFNKGITFFDTADVYGAHANEVLVGKVLKQ--LPRKKIQLASKFGVVSMAPT 100 (357)
Q Consensus 23 ~lglG~~~~g~~~~~~~~~~~~~~~l~~A~~~Gin~~DtA~~Yg~g~sE~~lG~al~~--~~R~~~~I~tK~~~~~~~~~ 100 (357)
+||||||++|+. .++.+++.++|+.|++.|||+||||+.||+|.||+++|++|++ .+|++++|+||+... .
T Consensus 1 ~l~lG~~~~~~~---~~~~~~~~~~l~~a~~~Gin~~DtA~~Y~~g~sE~~lg~~l~~~~~~r~~~~i~tK~~~~----~ 73 (283)
T PF00248_consen 1 PLGLGTWRLGGE---RVSEEEAEAILRRALEAGINFFDTADSYGNGRSERILGRALRKSRVPRDDIFISTKVYGD----G 73 (283)
T ss_dssp SBEEECTTBTTT---TSTHHHHHHHHHHHHHTT--EEEECGGGGGGTHHHHHHHHHHHTSSTGGGSEEEEEEESS----S
T ss_pred CEEEEccccCCC---CCCHHHHHHHHHHHHHcCCCeecccccccccccccccccccccccccccccccccccccc----c
Confidence 589999998754 4589999999999999999999999999999999999999998 499999999999221 1
Q ss_pred ccccCCCHHHHHHHHHHHHhHhCCCcccEEEeecCCCCCC-ccccccCCCChhHHHHHHHHHHHcCccceEecCCCCHHH
Q 018374 101 SVIVKGTPEYVRSCCEASLKRLGVDYIDLYYQHRVDPSVP-IEDTVCDSLPTSLNIGELKMLVVEGKIKYIGLSEASPDT 179 (357)
Q Consensus 101 ~~~~~~~~~~i~~~v~~sL~~Lg~d~iDl~~lH~pd~~~~-~~~~~~~~~~~~~~~~aL~~L~~~G~ir~iGvS~~~~~~ 179 (357)
....+++++.+++++++||++||+||||+|+||||+.... ..++ |++|++|+++|+||+||||||+++.
T Consensus 74 ~~~~~~~~~~i~~~~~~sL~~L~~d~iDl~~lH~~~~~~~~~~~~----------~~~l~~l~~~G~ir~iGvs~~~~~~ 143 (283)
T PF00248_consen 74 KPEPDYSPDSIRESLERSLERLGTDYIDLLLLHWPDPSEDALEEV----------WEALEELKKEGKIRHIGVSNFSPEQ 143 (283)
T ss_dssp STGGGSSHHHHHHHHHHHHHHHTSSSEEEEEESSSSTTSSHHHHH----------HHHHHHHHHTTSEEEEEEES--HHH
T ss_pred cccccccccccccccccccccccccchhccccccccccccccchh----------hhhhhhccccccccccccccccccc
Confidence 2234789999999999999999999999999999998776 5556 9999999999999999999999999
Q ss_pred HHHH--hccCCceEEeccccccccchhhhHHHHHHHhCCceeecccCccccCCCCCcCCCCCCCcccccCCCCCCCcchh
Q 018374 180 IRRA--HAVHPITAVQMEWSLLTRDIEEEIIPLCRELGIGIVPYSPLGRGLLGGKAVVESLPANSFLISHPRFTGENLGK 257 (357)
Q Consensus 180 l~~~--~~~~~~~~~q~~~n~~~~~~~~~~~~~~~~~gi~v~a~spl~~G~L~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 257 (357)
++++ ....+++++|++||++++....+++++|+++||++++|+|+++|+|+++......+.. ......
T Consensus 144 l~~~~~~~~~~~~~~q~~~n~~~~~~~~~l~~~~~~~gi~v~a~~~l~~G~l~~~~~~~~~~~~----------~~~~~~ 213 (283)
T PF00248_consen 144 LEAALKIGSIPPDVVQINYNLLNRREEEGLLEFCREHGIGVIAYSPLAGGLLTGKYKSPPPPPS----------RASLRD 213 (283)
T ss_dssp HHHHHTCTSS-ESEEEEE-BTTBHBGGHHHHHHHHHTT-EEEEESTTGGGCGGTTTTTTTTSTT----------TSGSST
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccCccccccccCCCccc----------ccccch
Confidence 9999 5567899999999999776778999999999999999999999999987332211110 000011
Q ss_pred hHHHHHHHHHHHHhcCCChHHHHHHHHHhCCCCeEEecCCCCHHHHHHHHhccCCCCCHHHHHHHHhhC
Q 018374 258 NKQIYARVENLAKRNKCTPAQLSLAWLLRQGDDIVPIPGTTKIKNLDENIGSLMMKLTKEDMKEILNFV 326 (357)
Q Consensus 258 ~~~~~~~l~~ia~~~g~s~~q~al~~~l~~~~v~~~ivG~~~~~~l~enl~a~~~~L~~~~~~~i~~~~ 326 (357)
.....+.+.++++++|+|++|+||+|+++++.+++||+|+++++|+++|+++++.+||++++++|++++
T Consensus 214 ~~~~~~~l~~~a~~~g~s~~q~al~~~l~~~~~~~~i~g~~~~~~l~en~~a~~~~L~~~~~~~i~~~~ 282 (283)
T PF00248_consen 214 AQELADALRELAEEHGVSPAQLALRWVLSHPGVASVIVGASSPEHLEENLAALDFPLTEEELAEIDQIL 282 (283)
T ss_dssp HGGGHHHHHHHHHHHTSSHHHHHHHHHHTSHTTEEEEEB-SSHHHHHHHHGGSSSG--HHHHHHHHTTH
T ss_pred hhhhhhhhhhhhhhcccccchhhhhhhhhccccccccCCCCCHHHHHHHHHHhCCCCCHHHHHHHHhhh
Confidence 456778999999999999999999999999999999999999999999999999999999999999874
No 11
>PRK11172 dkgB 2,5-diketo-D-gluconate reductase B; Provisional
Probab=100.00 E-value=1.4e-54 Score=398.81 Aligned_cols=248 Identities=26% Similarity=0.416 Sum_probs=218.8
Q ss_pred cccccceeccccccCCCCCCCCHHHHHHHHHHHHHcCCCeEeCccCcCCCchHHHHHHHHhcC--CCCCeEEEeeeeecc
Q 018374 19 LEVSKLGFGCMGLTGMYNSPVSEEDGISIIKHAFNKGITFFDTADVYGAHANEVLVGKVLKQL--PRKKIQLASKFGVVS 96 (357)
Q Consensus 19 ~~vs~lglG~~~~g~~~~~~~~~~~~~~~l~~A~~~Gin~~DtA~~Yg~g~sE~~lG~al~~~--~R~~~~I~tK~~~~~ 96 (357)
++||+||||||++ +.+++.++++.|++.|||+||||+.|| +|..+|++|++. +|++++|+||++..
T Consensus 1 ~~vs~lglGt~~~--------~~~~~~~~i~~A~~~Gi~~~DTA~~Yg---~E~~lG~al~~~~~~R~~v~i~TK~~~~- 68 (267)
T PRK11172 1 MSIPAFGLGTFRL--------KDQVVIDSVKTALELGYRAIDTAQIYD---NEAAVGQAIAESGVPRDELFITTKIWID- 68 (267)
T ss_pred CCCCCEeeEcccc--------ChHHHHHHHHHHHHcCCCEEEccchhC---CHHHHHHHHHHcCCChhHeEEEEEeCCC-
Confidence 3689999999986 346799999999999999999999999 799999999863 69999999998532
Q ss_pred CCCcccccCCCHHHHHHHHHHHHhHhCCCcccEEEeecCCCCCCccccccCCCChhHHHHHHHHHHHcCccceEecCCCC
Q 018374 97 MAPTSVIVKGTPEYVRSCCEASLKRLGVDYIDLYYQHRVDPSVPIEDTVCDSLPTSLNIGELKMLVVEGKIKYIGLSEAS 176 (357)
Q Consensus 97 ~~~~~~~~~~~~~~i~~~v~~sL~~Lg~d~iDl~~lH~pd~~~~~~~~~~~~~~~~~~~~aL~~L~~~G~ir~iGvS~~~ 176 (357)
..+++.+++++++||+|||+||||+|++|||++.... ...++|++|++|+++||||+||||||+
T Consensus 69 --------~~~~~~~~~~~~~SL~rL~~d~iDl~~lH~~~~~~~~--------~~~~~~~~l~~l~~~Gkir~iGvSn~~ 132 (267)
T PRK11172 69 --------NLAKDKLIPSLKESLQKLRTDYVDLTLIHWPSPNDEV--------SVEEFMQALLEAKKQGLTREIGISNFT 132 (267)
T ss_pred --------CCCHHHHHHHHHHHHHHhCCCceEEEEeCCCCCCCCC--------CHHHHHHHHHHHHHCCCCCEEEEccCC
Confidence 4578999999999999999999999999999763111 123449999999999999999999999
Q ss_pred HHHHHHHhcc---CCceEEeccccccccchhhhHHHHHHHhCCceeecccCccccCCCCCcCCCCCCCcccccCCCCCCC
Q 018374 177 PDTIRRAHAV---HPITAVQMEWSLLTRDIEEEIIPLCRELGIGIVPYSPLGRGLLGGKAVVESLPANSFLISHPRFTGE 253 (357)
Q Consensus 177 ~~~l~~~~~~---~~~~~~q~~~n~~~~~~~~~~~~~~~~~gi~v~a~spl~~G~L~g~~~~~~~~~~~~~~~~~~~~~~ 253 (357)
.++++++++. .+++++|++||++++. .+++++|+++||++++|+||++|.+...
T Consensus 133 ~~~l~~~~~~~~~~~~~~~Q~~~~~~~~~--~~ll~~~~~~gi~v~a~spl~~G~~~~~--------------------- 189 (267)
T PRK11172 133 IALMKQAIAAVGAENIATNQIELSPYLQN--RKVVAFAKEHGIHVTSYMTLAYGKVLKD--------------------- 189 (267)
T ss_pred HHHHHHHHHhcCCCCCeEEeeecCCCCCc--HHHHHHHHHCCCEEEEECCCCCCcccCC---------------------
Confidence 9999888764 3678999999999874 5899999999999999999998865321
Q ss_pred cchhhHHHHHHHHHHHHhcCCChHHHHHHHHHhCCCCeEEecCCCCHHHHHHHHhccCCCCCHHHHHHHHhhCCC
Q 018374 254 NLGKNKQIYARVENLAKRNKCTPAQLSLAWLLRQGDDIVPIPGTTKIKNLDENIGSLMMKLTKEDMKEILNFVPI 328 (357)
Q Consensus 254 ~~~~~~~~~~~l~~ia~~~g~s~~q~al~~~l~~~~v~~~ivG~~~~~~l~enl~a~~~~L~~~~~~~i~~~~~~ 328 (357)
+.++++|+++|+|++|+||+|+++++ .++|+|+++++|+++|+++++++||++++++|+++..+
T Consensus 190 ---------~~l~~~a~~~~~s~aqval~w~l~~~--~~~i~g~~~~~~l~~n~~~~~~~L~~~~~~~i~~~~~~ 253 (267)
T PRK11172 190 ---------PVIARIAAKHNATPAQVILAWAMQLG--YSVIPSSTKRENLASNLLAQDLQLDAEDMAAIAALDRN 253 (267)
T ss_pred ---------HHHHHHHHHhCCCHHHHHHHHHHhCC--CEeecCCCCHHHHHHHHhhcCCCcCHHHHHHHhhhccC
Confidence 25889999999999999999999997 57999999999999999999999999999999999755
No 12
>KOG1577 consensus Aldo/keto reductase family proteins [General function prediction only]
Probab=100.00 E-value=6.2e-54 Score=386.99 Aligned_cols=269 Identities=29% Similarity=0.444 Sum_probs=235.3
Q ss_pred ceecCCCCcccccceeccccccCCCCCCCCHHHHHHHHHHHHHcCCCeEeCccCcCCCchHHHHHHHHhcC------CCC
Q 018374 11 RVKLGTQGLEVSKLGFGCMGLTGMYNSPVSEEDGISIIKHAFNKGITFFDTADVYGAHANEVLVGKVLKQL------PRK 84 (357)
Q Consensus 11 ~~~lg~tg~~vs~lglG~~~~g~~~~~~~~~~~~~~~l~~A~~~Gin~~DtA~~Yg~g~sE~~lG~al~~~------~R~ 84 (357)
..+| ++|.++|.||||||+. +..+..++++.|++.|+++||||..|+ +|..+|++|++. .|+
T Consensus 6 ~~~L-n~G~~mP~iGlGTw~~--------~~~~~~~aV~~Al~~GYRHIDtA~~Y~---NE~evG~aik~~i~~~~v~Re 73 (300)
T KOG1577|consen 6 TVKL-NNGFKMPIIGLGTWQS--------PPGQVAEAVKAAIKAGYRHIDTAHVYG---NEKEVGEAIKELLAEGGVKRE 73 (300)
T ss_pred eEec-cCCCccceeeeEeccc--------ChhhHHHHHHHHHHhCcceeechhhhC---ChHHHHHHHHHHhhhCCcchh
Confidence 6788 8999999999999983 678899999999999999999999999 899999999863 899
Q ss_pred CeEEEeeeeeccCCCcccccCCCHHHHHHHHHHHHhHhCCCcccEEEeecCCCCCC---cc---ccccCCCChhHHHHHH
Q 018374 85 KIQLASKFGVVSMAPTSVIVKGTPEYVRSCCEASLKRLGVDYIDLYYQHRVDPSVP---IE---DTVCDSLPTSLNIGEL 158 (357)
Q Consensus 85 ~~~I~tK~~~~~~~~~~~~~~~~~~~i~~~v~~sL~~Lg~d~iDl~~lH~pd~~~~---~~---~~~~~~~~~~~~~~aL 158 (357)
++||+||++.. ...++.++.++++||++||+||+|+|++|||-...+ .+ +......++.++|++|
T Consensus 74 diFiTSKlw~~---------~~~~~~v~~al~~sLk~L~ldYvDLyLiH~P~~~k~~~~~~~~~~~~~~~~~~~~tW~am 144 (300)
T KOG1577|consen 74 DIFITSKLWPT---------DHAPELVEKALEKSLKKLQLDYVDLYLIHWPVAFKDSFPKDENGKVNYDDVDRIETWKAM 144 (300)
T ss_pred hheeeeccCcc---------ccChhhHHHHHHHHHHHhChhhhheeeEecccccCCCCCcccccccccccchHHHHHHHH
Confidence 99999999875 457899999999999999999999999999955421 11 1112234788899999
Q ss_pred HHHHHcCccceEecCCCCHHHHHHHhcc--CCceEEeccccccccchhhhHHHHHHHhCCceeecccCccccCCCCCcCC
Q 018374 159 KMLVVEGKIKYIGLSEASPDTIRRAHAV--HPITAVQMEWSLLTRDIEEEIIPLCRELGIGIVPYSPLGRGLLGGKAVVE 236 (357)
Q Consensus 159 ~~L~~~G~ir~iGvS~~~~~~l~~~~~~--~~~~~~q~~~n~~~~~~~~~~~~~~~~~gi~v~a~spl~~G~L~g~~~~~ 236 (357)
+++++.|+||+||||||+..+++++++. .++.++|++++++.+ +.+++++|+++||-|.|||||+.+-- +.
T Consensus 145 E~~~~~Gl~rsIGVSNF~~~~le~ll~~~ki~P~vnQvE~HP~~~--Q~~L~~fCk~~~I~v~AYSpLg~~~~-~~---- 217 (300)
T KOG1577|consen 145 EKLVDEGLVRSIGVSNFNIKQLEELLNLAKIKPAVNQVECHPYLQ--QKKLVEFCKSKGIVVTAYSPLGSPGR-GS---- 217 (300)
T ss_pred HHHHHcCCceEeeeecCCHHHHHHHHhcCCCCCccceeeccCCcC--hHHHHHHHhhCCcEEEEecCCCCCCC-cc----
Confidence 9999999999999999999999999887 567899999999888 46799999999999999999987521 00
Q ss_pred CCCCCcccccCCCCCCCcchhhHHHHHHHHHHHHhcCCChHHHHHHHHHhCCCCeEEecCCCCHHHHHHHHhccCCCCCH
Q 018374 237 SLPANSFLISHPRFTGENLGKNKQIYARVENLAKRNKCTPAQLSLAWLLRQGDDIVPIPGTTKIKNLDENIGSLMMKLTK 316 (357)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ia~~~g~s~~q~al~~~l~~~~v~~~ivG~~~~~~l~enl~a~~~~L~~ 316 (357)
. .---+.+.+||++|+.|++|++|||.++++ ++|||.++|++||+||++.+++.||+
T Consensus 218 -----~----------------ll~~~~l~~iA~K~~kt~aQIlLrw~~q~g--~~vipKS~~~~Ri~eN~~vfdf~Lt~ 274 (300)
T KOG1577|consen 218 -----D----------------LLEDPVLKEIAKKYNKTPAQILLRWALQRG--VSVIPKSSNPERIKENFKVFDFELTE 274 (300)
T ss_pred -----c----------------cccCHHHHHHHHHhCCCHHHHHHHHHHhCC--cEEEeccCCHHHHHHHHhhccccCCH
Confidence 0 011158999999999999999999999999 89999999999999999999999999
Q ss_pred HHHHHHHhhCCCCc
Q 018374 317 EDMKEILNFVPIEE 330 (357)
Q Consensus 317 ~~~~~i~~~~~~~~ 330 (357)
+||+.|+....+.+
T Consensus 275 ed~~~i~~~~~~~r 288 (300)
T KOG1577|consen 275 EDMKKLDSLNSNER 288 (300)
T ss_pred HHHHHHhhccccce
Confidence 99999998877764
No 13
>COG4989 Predicted oxidoreductase [General function prediction only]
Probab=100.00 E-value=3.1e-54 Score=372.77 Aligned_cols=287 Identities=29% Similarity=0.430 Sum_probs=256.9
Q ss_pred CCceecCCCCcccccceeccccccCCCCCCCCHHHHHHHHHHHHHcCCCeEeCccCcCCCchHHHHHHHHhcC--CCCCe
Q 018374 9 APRVKLGTQGLEVSKLGFGCMGLTGMYNSPVSEEDGISIIKHAFNKGITFFDTADVYGAHANEVLVGKVLKQL--PRKKI 86 (357)
Q Consensus 9 m~~~~lg~tg~~vs~lglG~~~~g~~~~~~~~~~~~~~~l~~A~~~Gin~~DtA~~Yg~g~sE~~lG~al~~~--~R~~~ 86 (357)
|++++|++.|+.+|++.+|+|++.. |+ +...+..+.++.|++.|||+||-|+.||++..|.++|.+|+-. .|+++
T Consensus 1 m~rI~l~~~~~e~Sriv~G~wRl~d-~~--~~~~e~~~~Ie~~le~Gitt~DhADIYGgy~cE~~fg~aL~l~p~lReki 77 (298)
T COG4989 1 MQRITLAPDGLEFSRIVLGYWRLND-WN--MSARELLSFIETALELGITTFDHADIYGGYQCEALFGEALKLAPGLREKI 77 (298)
T ss_pred CceEEecCCCccHHHHHHHHHhhhh-cc--CCHHHHHHHHHHHHHcCcccchhhhhcCCccHHHHHHHHHhcChhhhhhe
Confidence 7899999999999999999999964 43 4678999999999999999999999999999999999999875 79999
Q ss_pred EEEeeeeeccCCCc---ccccCCCHHHHHHHHHHHHhHhCCCcccEEEeecCCCCCCccccccCCCChhHHHHHHHHHHH
Q 018374 87 QLASKFGVVSMAPT---SVIVKGTPEYVRSCCEASLKRLGVDYIDLYYQHRVDPSVPIEDTVCDSLPTSLNIGELKMLVV 163 (357)
Q Consensus 87 ~I~tK~~~~~~~~~---~~~~~~~~~~i~~~v~~sL~~Lg~d~iDl~~lH~pd~~~~~~~~~~~~~~~~~~~~aL~~L~~ 163 (357)
.|.||+|....... ...++.|.++|..|||+||.+|+|||+|+++||+||+..+.+++ .+|+..|++
T Consensus 78 eivsKCGI~~~s~~~~~~~hydts~~HI~~SVe~SL~~L~tDylD~LLiHRPDpLmd~eeV----------AeAf~~L~~ 147 (298)
T COG4989 78 EIVSKCGIRLPSREEPRIGHYDTSKEHIIKSVEQSLINLKTDYLDLLLIHRPDPLMDAEEV----------AEAFTHLHK 147 (298)
T ss_pred EeeeccccccccccccccccccCcHHHHHHHHHHHHHHhccchhhhhhccCCcccCCHHHH----------HHHHHHHHh
Confidence 99999998766432 12579999999999999999999999999999999999888888 999999999
Q ss_pred cCccceEecCCCCHHHHHHHhcc--CCceEEeccccccccc-hhhhHHHHHHHhCCceeecccCccccCCCCCcCCCCCC
Q 018374 164 EGKIKYIGLSEASPDTIRRAHAV--HPITAVQMEWSLLTRD-IEEEIIPLCRELGIGIVPYSPLGRGLLGGKAVVESLPA 240 (357)
Q Consensus 164 ~G~ir~iGvS~~~~~~l~~~~~~--~~~~~~q~~~n~~~~~-~~~~~~~~~~~~gi~v~a~spl~~G~L~g~~~~~~~~~ 240 (357)
+||||++|||||++.+++-+.+. .++..+|++.|+++.. ...+.+++|+++.|..++||||++|.+...
T Consensus 148 sGKVr~fGVSNf~p~Q~~LL~s~l~~~LvtNQlelS~~~~~~~~DGtLd~~q~~~v~pmaWSpl~gG~~F~g-------- 219 (298)
T COG4989 148 SGKVRHFGVSNFNPAQFELLQSRLPFTLVTNQLELSPLHTPMLLDGTLDYCQQLRVRPMAWSPLGGGGLFLG-------- 219 (298)
T ss_pred cCCeeeeecCCCCHHHHHHHHHhccchhhhcceeeccccccccccchHHHHHHcCCCcccccccCCCccccC--------
Confidence 99999999999999999887776 4568899999999976 346799999999999999999999854321
Q ss_pred CcccccCCCCCCCcchhhHHHHHHHHHHHHhcC-CChHHHHHHHHHhCCCCeEEecCCCCHHHHHHHHhccCCCCCHHHH
Q 018374 241 NSFLISHPRFTGENLGKNKQIYARVENLAKRNK-CTPAQLSLAWLLRQGDDIVPIPGTTKIKNLDENIGSLMMKLTKEDM 319 (357)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~l~~ia~~~g-~s~~q~al~~~l~~~~v~~~ivG~~~~~~l~enl~a~~~~L~~~~~ 319 (357)
-+..+....++..||+++| .|..++|++|++.+|.-..||+|+.|++++++.+++++..||.++|
T Consensus 220 --------------~~~~q~l~~~l~~ia~e~ga~s~~~VaiAWllR~Pa~~~PiiGt~~~eRi~~a~~Al~~~LtRqqW 285 (298)
T COG4989 220 --------------DDKFQRLRKVLDRIAEEYGAVSITAVAIAWLLRHPAKPQPIIGTGNLERIRAAIKALSLTLTRQQW 285 (298)
T ss_pred --------------CcchHHHHHHHHHHHHHhCcccHHHHHHHHHHhCcCcccceecCCCHHHHHHHHHHhhccccHHHH
Confidence 1234567789999999999 7999999999999999999999999999999999999999999999
Q ss_pred HHHHhhCCCCc
Q 018374 320 KEILNFVPIEE 330 (357)
Q Consensus 320 ~~i~~~~~~~~ 330 (357)
-+|.....+..
T Consensus 286 f~Iy~Aa~G~~ 296 (298)
T COG4989 286 FEIYTAAIGND 296 (298)
T ss_pred HHHHHHhccCC
Confidence 99988875543
No 14
>PRK14863 bifunctional regulator KidO; Provisional
Probab=100.00 E-value=7.4e-54 Score=398.03 Aligned_cols=270 Identities=19% Similarity=0.248 Sum_probs=228.7
Q ss_pred CcccccceeccccccCC-------CCCCCCHHHHHHHHHHHHHcCCCeEeCccCcCCCchHHHHHHHHhcCCCCCeEEEe
Q 018374 18 GLEVSKLGFGCMGLTGM-------YNSPVSEEDGISIIKHAFNKGITFFDTADVYGAHANEVLVGKVLKQLPRKKIQLAS 90 (357)
Q Consensus 18 g~~vs~lglG~~~~g~~-------~~~~~~~~~~~~~l~~A~~~Gin~~DtA~~Yg~g~sE~~lG~al~~~~R~~~~I~t 90 (357)
+++||+||||||++|+. |+. ++.+++.++|+.|+++|||+||||+.|| .||..+|++|+...+++++|+|
T Consensus 2 ~~~vs~iglGt~~~g~~~~~~~~~~~~-~~~~ea~~~l~~A~~~Gin~~DTA~~YG--~SE~~lG~al~~~~~~~~~i~t 78 (292)
T PRK14863 2 SSPVSKLGLAAAQFGLDPGSSSAPRGR-TPEAEARDILNIAARAGLSVLDASGLFG--RAETVLGQLIPRPVPFRVTLST 78 (292)
T ss_pred CCcceeeeeeeeccCCCcccccCCCCC-CCHHHHHHHHHHHHHcCCCEEecchhhh--hHHHHHhhhhccCCceEeeccc
Confidence 57899999999999864 443 5899999999999999999999999997 6999999999853346788888
Q ss_pred eeeeccCCCcccccCCCHHHHHHHHHHHHhHhCCCcccEEEeecCCCC-CCc-cccccCCCChhHHHHHHHHHHHcCccc
Q 018374 91 KFGVVSMAPTSVIVKGTPEYVRSCCEASLKRLGVDYIDLYYQHRVDPS-VPI-EDTVCDSLPTSLNIGELKMLVVEGKIK 168 (357)
Q Consensus 91 K~~~~~~~~~~~~~~~~~~~i~~~v~~sL~~Lg~d~iDl~~lH~pd~~-~~~-~~~~~~~~~~~~~~~aL~~L~~~G~ir 168 (357)
|.. +.+++.+++++++||+|||+||||+|++|||++. .+. +++ |++|++|+++||||
T Consensus 79 k~~-----------~~~~~~i~~~~e~SL~rLg~d~iDl~~lH~~~~~~~~~~~~~----------~~~l~~l~~~Gkir 137 (292)
T PRK14863 79 VRA-----------DRGPDFVEAEARASLRRMGVERADAILVHSPTELFGPHGAAL----------WERLQALKDQGLFA 137 (292)
T ss_pred ccc-----------cccHHHHHHHHHHHHHHhCCCccCeEEEeCchhhcCcchHHH----------HHHHHHHHHcCCcc
Confidence 842 2368999999999999999999999999999753 222 334 99999999999999
Q ss_pred eEecCCCCHHHHHHHhccCCceEEeccccccccchh-hhHHHHHHHhCCceeecccCccccCCCCCcCCCCCCCcccccC
Q 018374 169 YIGLSEASPDTIRRAHAVHPITAVQMEWSLLTRDIE-EEIIPLCRELGIGIVPYSPLGRGLLGGKAVVESLPANSFLISH 247 (357)
Q Consensus 169 ~iGvS~~~~~~l~~~~~~~~~~~~q~~~n~~~~~~~-~~~~~~~~~~gi~v~a~spl~~G~L~g~~~~~~~~~~~~~~~~ 247 (357)
+||||||+++++.++....+++++|++||++++..+ .+++++|+++||++++|+||++|+|++... ..+
T Consensus 138 ~iGvSn~~~~~~~~~~~~~~~~~~Q~~~n~l~~~~~~~~~l~~~~~~gi~v~a~spl~~G~L~~~~~--~~~-------- 207 (292)
T PRK14863 138 KIGVSAHASDDPVGVARRFKPDILQAPASLLDQRLLADGSLQRIAGMGVEVHLRSIFLNGLLFLPPD--RVP-------- 207 (292)
T ss_pred eEeeeccCHHHHHHHHhcCCCCEEEecCCcccccccccchHHHHHhCCCEEEEechhhCccccCCcc--cCc--------
Confidence 999999999999888877889999999999998653 469999999999999999999999975311 110
Q ss_pred CCCCCCcchhhHHHHHHHHHHHHhcCCChHHHHHHHHHhCCCCeEEecCCCCHHHHHHHHhccCCCCCHHHHHHHHhhC
Q 018374 248 PRFTGENLGKNKQIYARVENLAKRNKCTPAQLSLAWLLRQGDDIVPIPGTTKIKNLDENIGSLMMKLTKEDMKEILNFV 326 (357)
Q Consensus 248 ~~~~~~~~~~~~~~~~~l~~ia~~~g~s~~q~al~~~l~~~~v~~~ivG~~~~~~l~enl~a~~~~L~~~~~~~i~~~~ 326 (357)
.........+..+.++++++++|++|+||+|++++|.|+++|+|+++++||++|+++.+.+++++.+++|..-.
T Consensus 208 -----~~~~~~~~~~~~~~~~~~~~~~s~aqlalaw~l~~p~v~~~I~G~~~~~ql~~n~~a~~~~~~~~~~~~l~~~~ 281 (292)
T PRK14863 208 -----AQLKGASGRLSRVRRMIAEGRSDPLQAALGFALSRPEGSAVLVGVNSAAELSAVVAAASSPPPDLDWDDMAIDD 281 (292)
T ss_pred -----cchhhhhHHHHHHHHHHHHcCCCHHHHHHHHHHhCCCCCeEEEecCCHHHHHHHHHHHhcCCCccchhhccCCh
Confidence 01112235567788888889999999999999999999999999999999999999999899998887775543
No 15
>PRK11565 dkgA 2,5-diketo-D-gluconate reductase A; Provisional
Probab=100.00 E-value=6e-52 Score=382.66 Aligned_cols=255 Identities=29% Similarity=0.407 Sum_probs=221.9
Q ss_pred eecCCCCcccccceeccccccCCCCCCCCHHHHHHHHHHHHHcCCCeEeCccCcCCCchHHHHHHHHhcC--CCCCeEEE
Q 018374 12 VKLGTQGLEVSKLGFGCMGLTGMYNSPVSEEDGISIIKHAFNKGITFFDTADVYGAHANEVLVGKVLKQL--PRKKIQLA 89 (357)
Q Consensus 12 ~~lg~tg~~vs~lglG~~~~g~~~~~~~~~~~~~~~l~~A~~~Gin~~DtA~~Yg~g~sE~~lG~al~~~--~R~~~~I~ 89 (357)
..| ++|+.||+||||||++ +.+++.+++++|++.|+|+||||+.|| +|+.+|++|+.. +|++++|+
T Consensus 7 ~~l-~~g~~v~~lglG~~~~--------~~~~~~~~l~~A~~~Gi~~~DTA~~Yg---~E~~lG~al~~~~~~R~~~~i~ 74 (275)
T PRK11565 7 IKL-QDGNVMPQLGLGVWQA--------SNEEVITAIHKALEVGYRSIDTAAIYK---NEEGVGKALKEASVAREELFIT 74 (275)
T ss_pred EEc-CCCCccCCcceECccC--------CHHHHHHHHHHHHHhCCCEEEchhhhC---CHHHHHHHHHHcCCCHHHEEEE
Confidence 557 7999999999999975 568899999999999999999999998 799999999864 58999999
Q ss_pred eeeeeccCCCcccccCCCHHHHHHHHHHHHhHhCCCcccEEEeecCCCCCCccccccCCCChhHHHHHHHHHHHcCccce
Q 018374 90 SKFGVVSMAPTSVIVKGTPEYVRSCCEASLKRLGVDYIDLYYQHRVDPSVPIEDTVCDSLPTSLNIGELKMLVVEGKIKY 169 (357)
Q Consensus 90 tK~~~~~~~~~~~~~~~~~~~i~~~v~~sL~~Lg~d~iDl~~lH~pd~~~~~~~~~~~~~~~~~~~~aL~~L~~~G~ir~ 169 (357)
||++.. +++.+++++++||++||+||||+|++|||++..+ .+.++|++|++|+++|+||+
T Consensus 75 tK~~~~-----------~~~~~~~~~~~sL~rL~~d~iDl~~lH~p~~~~~---------~~~~~~~~l~~l~~~G~ir~ 134 (275)
T PRK11565 75 TKLWND-----------DHKRPREALEESLKKLQLDYVDLYLMHWPVPAID---------HYVEAWKGMIELQKEGLIKS 134 (275)
T ss_pred EEecCc-----------chHHHHHHHHHHHHHhCCCceEEEEecCCCCCcC---------cHHHHHHHHHHHHHcCCeeE
Confidence 998521 4679999999999999999999999999976421 12344999999999999999
Q ss_pred EecCCCCHHHHHHHhccC--CceEEeccccccccchhhhHHHHHHHhCCceeecccCccccCCCCCcCCCCCCCcccccC
Q 018374 170 IGLSEASPDTIRRAHAVH--PITAVQMEWSLLTRDIEEEIIPLCRELGIGIVPYSPLGRGLLGGKAVVESLPANSFLISH 247 (357)
Q Consensus 170 iGvS~~~~~~l~~~~~~~--~~~~~q~~~n~~~~~~~~~~~~~~~~~gi~v~a~spl~~G~L~g~~~~~~~~~~~~~~~~ 247 (357)
||||||+++++++++... .+.++|++||++.+. .+++++|+++||++++|+||++|.- +
T Consensus 135 iGvSn~~~~~l~~~~~~~~v~~~~~Q~~~~~~~~~--~~~~~~~~~~~i~~~a~spl~~G~~-~---------------- 195 (275)
T PRK11565 135 IGVCNFQIHHLQRLIDETGVTPVINQIELHPLMQQ--RQLHAWNATHKIQTESWSPLAQGGK-G---------------- 195 (275)
T ss_pred EeeccCCHHHHHHHHHhCCCCceeeeeecCCccch--HHHHHHHHHCCCEEEEEccCCCCCc-c----------------
Confidence 999999999999887654 457899999999874 5799999999999999999987620 0
Q ss_pred CCCCCCcchhhHHHHHHHHHHHHhcCCChHHHHHHHHHhCCCCeEEecCCCCHHHHHHHHhccCCCCCHHHHHHHHhhCC
Q 018374 248 PRFTGENLGKNKQIYARVENLAKRNKCTPAQLSLAWLLRQGDDIVPIPGTTKIKNLDENIGSLMMKLTKEDMKEILNFVP 327 (357)
Q Consensus 248 ~~~~~~~~~~~~~~~~~l~~ia~~~g~s~~q~al~~~l~~~~v~~~ivG~~~~~~l~enl~a~~~~L~~~~~~~i~~~~~ 327 (357)
.|. .+.+.++|+++|+|++|+||+|+++++ .++|+|+++++|+++|+++++++|+++++++|+++..
T Consensus 196 -~~~----------~~~l~~ia~~~g~s~aq~aL~w~l~~~--~~~I~g~~~~~~i~~n~~a~~~~Ls~~~~~~i~~~~~ 262 (275)
T PRK11565 196 -VFD----------QKVIRDLADKYGKTPAQIVIRWHLDSG--LVVIPKSVTPSRIAENFDVFDFRLDKDELGEIAKLDQ 262 (275)
T ss_pred -ccc----------CHHHHHHHHHhCCCHHHHHHHHHHcCC--CEeeCCCCCHHHHHHHHhccCCCcCHHHHHHHHhhcc
Confidence 000 146899999999999999999999997 4699999999999999999999999999999999976
Q ss_pred CCc
Q 018374 328 IEE 330 (357)
Q Consensus 328 ~~~ 330 (357)
..+
T Consensus 263 ~~~ 265 (275)
T PRK11565 263 GKR 265 (275)
T ss_pred cCC
Confidence 543
No 16
>COG1453 Predicted oxidoreductases of the aldo/keto reductase family [General function prediction only]
Probab=100.00 E-value=2e-50 Score=367.62 Aligned_cols=278 Identities=28% Similarity=0.393 Sum_probs=247.5
Q ss_pred CCceecCCCCcccccceeccccccCCCCCCCCHHHHHHHHHHHHHcCCCeEeCccCcCCCchHHHHHHHHhcCCCCCeEE
Q 018374 9 APRVKLGTQGLEVSKLGFGCMGLTGMYNSPVSEEDGISIIKHAFNKGITFFDTADVYGAHANEVLVGKVLKQLPRKKIQL 88 (357)
Q Consensus 9 m~~~~lg~tg~~vs~lglG~~~~g~~~~~~~~~~~~~~~l~~A~~~Gin~~DtA~~Yg~g~sE~~lG~al~~~~R~~~~I 88 (357)
|.||++|+||.++|.||||||++...|....|.+.+.++|++|+++|||+||||..|..|.||..+|++|++..|++|++
T Consensus 1 Mlyr~~~k~g~~~s~lgfG~MRlp~~~~~~id~~~~~~~i~~aie~GiNyidTA~~Yh~g~sE~~lgkaL~~~~Rekv~L 80 (391)
T COG1453 1 MLYRKFPKTGDELSILGFGCMRLPLKEQGSIDEENANETIDYAIEHGINYIDTAWPYHGGESEEFLGKALKDGYREKVKL 80 (391)
T ss_pred CchhhcCCCCcccceeccceeecccccCCCccHHHHHHHHHHHHHcCCceEeecccccCCCchHHHHHHhhhcccceEEE
Confidence 88999999999999999999999876655669999999999999999999999999988899999999999999999999
Q ss_pred EeeeeeccCCCcccccCCCHHHHHHHHHHHHhHhCCCcccEEEeecCCCCCCccccccCCCChhHHHHHHHHHHHcCccc
Q 018374 89 ASKFGVVSMAPTSVIVKGTPEYVRSCCEASLKRLGVDYIDLYYQHRVDPSVPIEDTVCDSLPTSLNIGELKMLVVEGKIK 168 (357)
Q Consensus 89 ~tK~~~~~~~~~~~~~~~~~~~i~~~v~~sL~~Lg~d~iDl~~lH~pd~~~~~~~~~~~~~~~~~~~~aL~~L~~~G~ir 168 (357)
+||+.... --+++.+++-++++|++||+||+|+|+||..+. ..++. ....++++.+++++++|+||
T Consensus 81 aTKlp~~~--------~~~~edm~r~fneqLekl~~Dy~D~yliH~l~~-e~~~k-----~~~~g~~df~~kak~eGkIr 146 (391)
T COG1453 81 ATKLPSWP--------VKDREDMERIFNEQLEKLGTDYIDYYLIHGLNT-ETWEK-----IERLGVFDFLEKAKAEGKIR 146 (391)
T ss_pred EeecCCcc--------ccCHHHHHHHHHHHHHHhCCchhhhhhhccccH-HHHHH-----HHccChHHHHHHHHhcCcEE
Confidence 99998543 237899999999999999999999999999976 33332 23445799999999999999
Q ss_pred eEecCCC-CHHHHHHHhccCCceEEeccccccccchh--hhHHHHHHHhCCceeecccCccccCCCCCcCCCCCCCcccc
Q 018374 169 YIGLSEA-SPDTIRRAHAVHPITAVQMEWSLLTRDIE--EEIIPLCRELGIGIVPYSPLGRGLLGGKAVVESLPANSFLI 245 (357)
Q Consensus 169 ~iGvS~~-~~~~l~~~~~~~~~~~~q~~~n~~~~~~~--~~~~~~~~~~gi~v~a~spl~~G~L~g~~~~~~~~~~~~~~ 245 (357)
++|+|.| +++.+.+++...+++++|++||.+++... .+.+.+|.++|++|+.++|+.+|-|.... |
T Consensus 147 ~~GFSfHgs~e~~~~iv~a~~~dfvqlq~ny~d~~n~~~~~~l~~A~~~~~gI~IMeP~~gG~l~~~v-----P------ 215 (391)
T COG1453 147 NAGFSFHGSTEVFKEIVDAYPWDFVQLQYNYIDQKNQAGTEGLKYAASKGLGIFIMEPLDGGGLLYNV-----P------ 215 (391)
T ss_pred EeeecCCCCHHHHHHHHhcCCcceEEeeeeeeccchhcccHHHHHHHhCCCcEEEEeeCCCCCcccCC-----C------
Confidence 9999999 67889999999999999999999998644 38999999999999999999999887531 1
Q ss_pred cCCCCCCCcchhhHHHHHHHHHHHHhcC--CChHHHHHHHHHhCCCCeEEecCCCCHHHHHHHHhccCC--C-CCHHHHH
Q 018374 246 SHPRFTGENLGKNKQIYARVENLAKRNK--CTPAQLSLAWLLRQGDDIVPIPGTTKIKNLDENIGSLMM--K-LTKEDMK 320 (357)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~l~~ia~~~g--~s~~q~al~~~l~~~~v~~~ivG~~~~~~l~enl~a~~~--~-L~~~~~~ 320 (357)
+++.+|+++++ .||+.+|+||++++|.|+++++|+++++|++||++.++. | ||++|++
T Consensus 216 -----------------~~~~~l~~~~~~~~sP~~wa~R~~~shp~V~~vlsGm~~~~~l~enLk~~~~~~p~lte~e~~ 278 (391)
T COG1453 216 -----------------EKLEELCRPASPKRSPAEWALRYLLSHPEVTTVLSGMNTPEQLEENLKIASELEPSLTEEELQ 278 (391)
T ss_pred -----------------HHHHHHHHhcCCCCCcHHHHHHHHhcCCCeEEEecCCCCHHHHHHHHHHHhhcCCccCHHHHH
Confidence 47888998875 689999999999999999999999999999999999964 4 9999999
Q ss_pred HHHhhCCC
Q 018374 321 EILNFVPI 328 (357)
Q Consensus 321 ~i~~~~~~ 328 (357)
.|.++.+.
T Consensus 279 il~~v~~~ 286 (391)
T COG1453 279 ILEKVEEI 286 (391)
T ss_pred HHHHHHHH
Confidence 88887643
No 17
>KOG1576 consensus Predicted oxidoreductase [Energy production and conversion]
Probab=100.00 E-value=7.7e-50 Score=347.90 Aligned_cols=288 Identities=24% Similarity=0.360 Sum_probs=247.1
Q ss_pred CCCCCceecCCCCcccccceeccccccCCCCCCCCHHHHHHHHHHHHHcCCCeEeCccCcCCCchHHHHHHHHhcCCCCC
Q 018374 6 KIQAPRVKLGTQGLEVSKLGFGCMGLTGMYNSPVSEEDGISIIKHAFNKGITFFDTADVYGAHANEVLVGKVLKQLPRKK 85 (357)
Q Consensus 6 ~~~m~~~~lg~tg~~vs~lglG~~~~g~~~~~~~~~~~~~~~l~~A~~~Gin~~DtA~~Yg~g~sE~~lG~al~~~~R~~ 85 (357)
.-.|.+|.||+||++||+||||+..++..|+.. ++++....+..|+.+|||+||||+.||.++||..+|.++++.+|+.
T Consensus 19 vrrmeyR~lg~tgl~VSk~~fGga~L~~~fgd~-~~e~~i~tv~eA~k~GINyiDTsp~Ygqs~se~~lg~al~~vPR~a 97 (342)
T KOG1576|consen 19 VRRMEYRQLGSTGLRVSKLGFGGAALGQLFGDE-DEEEGILTVIEAFKSGINYIDTSPYYGQSRSEEGLGLALKDVPREA 97 (342)
T ss_pred HHHHHHhhcCCCcceeeeeeecchhhhhhcCCc-chhhhHHHHHHHHHccccceecCcccCcchhHHHHHHHHhhCChhh
Confidence 345899999999999999999999999988873 7777777677799999999999999999999999999999999999
Q ss_pred eEEEeeeeeccCCCcccccCCCHHHHHHHHHHHHhHhCCCcccEEEeecCCCCCCccccccCCCChhHHHHHHHHHHHcC
Q 018374 86 IQLASKFGVVSMAPTSVIVKGTPEYVRSCCEASLKRLGVDYIDLYYQHRVDPSVPIEDTVCDSLPTSLNIGELKMLVVEG 165 (357)
Q Consensus 86 ~~I~tK~~~~~~~~~~~~~~~~~~~i~~~v~~sL~~Lg~d~iDl~~lH~pd~~~~~~~~~~~~~~~~~~~~aL~~L~~~G 165 (357)
.+|+||+|...-.. ...++++++.+++||++||+||++||+|++++|..+.....+. .+.+++.+|++++++|
T Consensus 98 YyIaTKvgRy~ld~-~~~FdfsadkvreSv~rSlerLqldyvDilqiHDvefap~ld~------vl~Etlp~Le~lk~~G 170 (342)
T KOG1576|consen 98 YYIATKVGRYELDY-ANMFDFSADKVRESVKRSLERLQLDYVDILQIHDVEFAPNLDI------VLNETLPALEELKQEG 170 (342)
T ss_pred eeeeeeeeecccCc-cccccchHHHHHHHHHHHHHHhCCceeEEEEeecccccccccH------HHHHHHHHHHHHHhcC
Confidence 99999999664332 2357999999999999999999999999999999876533332 3567799999999999
Q ss_pred ccceEecCCCCHHHHHHHhccC--CceEEe--ccccccccchhhhHHHHHHHhCCceeecccCccccCCCCCcCCCCCCC
Q 018374 166 KIKYIGLSEASPDTIRRAHAVH--PITAVQ--MEWSLLTRDIEEEIIPLCRELGIGIVPYSPLGRGLLGGKAVVESLPAN 241 (357)
Q Consensus 166 ~ir~iGvS~~~~~~l~~~~~~~--~~~~~q--~~~n~~~~~~~~~~~~~~~~~gi~v~a~spl~~G~L~g~~~~~~~~~~ 241 (357)
|+|+||++.++.+.+.++++.. .++++. ++|++.+.. .-..+++.+..|++|++-++++.|+|+....+..
T Consensus 171 k~RfiGitgypldvl~~~ae~~~G~~dvvlsY~ry~l~d~t-Ll~~~~~~~sk~vgVi~AsalsmgLLt~~gp~~w---- 245 (342)
T KOG1576|consen 171 KIRFIGITGYPLDVLTECAERGKGRLDVVLSYCRYTLNDNT-LLRYLKRLKSKGVGVINASALSMGLLTNQGPPPW---- 245 (342)
T ss_pred ceeEeeecccchHHHHHHHhcCCCceeeehhhhhhccccHH-HHHHHHHHHhcCceEEehhhHHHHHhhcCCCCCC----
Confidence 9999999999999999998764 366665 677776653 3467888899999999999999999997643322
Q ss_pred cccccCCCCCCCcchhhHHHHHHHHHHHHhcCCChHHHHHHHHHhCCCCeEEecCCCCHHHHHHHHhccCCCCCH
Q 018374 242 SFLISHPRFTGENLGKNKQIYARVENLAKRNKCTPAQLSLAWLLRQGDDIVPIPGTTKIKNLDENIGSLMMKLTK 316 (357)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~l~~ia~~~g~s~~q~al~~~l~~~~v~~~ivG~~~~~~l~enl~a~~~~L~~ 316 (357)
++..+...+...+-.++|++.|++.+.+|++|.++.|+++++++|+++.++++.|+++-...||.
T Consensus 246 ----------HPaS~Elk~~a~~aa~~Cq~rnv~l~kLA~~Yam~~~~~~~~lvGm~s~~~l~~nLdan~~~ls~ 310 (342)
T KOG1576|consen 246 ----------HPASDELKEAAKAAAEYCQSRNVELGKLAMYYAMSLPGVSTVLVGMSSRQLLRINLDANFDRLSS 310 (342)
T ss_pred ----------CCCCHHHHHHHHHHHHHHHHcCccHHHHHHHHHHccCCcceEEecCchHHHHHHHHHhhhccccc
Confidence 22345567777788899999999999999999999999999999999999999999987666776
No 18
>KOG3023 consensus Glutamate-cysteine ligase regulatory subunit [Amino acid transport and metabolism]
Probab=97.78 E-value=5e-05 Score=66.59 Aligned_cols=73 Identities=18% Similarity=0.136 Sum_probs=61.0
Q ss_pred CChhHHHHHHHHHHHcCccceEecCCCCHHHHHHHhccCC--ceEEeccccccccchhhhHHHHHHHhCCceeecc
Q 018374 149 LPTSLNIGELKMLVVEGKIKYIGLSEASPDTIRRAHAVHP--ITAVQMEWSLLTRDIEEEIIPLCRELGIGIVPYS 222 (357)
Q Consensus 149 ~~~~~~~~aL~~L~~~G~ir~iGvS~~~~~~l~~~~~~~~--~~~~q~~~n~~~~~~~~~~~~~~~~~gi~v~a~s 222 (357)
......|+.||+++.+|+|..||+|.|+..+|++++.... +.++|+...-.+.-+ .++..||..|.|+++.++
T Consensus 153 e~lkplwk~LE~lv~~~kI~~lGvSDfda~qLe~Li~saqVvP~snqVnL~~cCvvP-pdLqafa~~hdiQLltHs 227 (285)
T KOG3023|consen 153 ESLKPLWKLLEELVGEGKIGTLGVSDFDANQLERLISSAQVVPESNQVNLGQCCVVP-PDLQAFADRHDIQLLTHS 227 (285)
T ss_pred HHHHHHHHHHHHHhccCceeeeeecccCHHHHHHHHhhhccccccceeeccccccCC-HHHHHHhhhcceeeeecC
Confidence 3456689999999999999999999999999999999854 456677666555433 589999999999999874
No 19
>cd03319 L-Ala-DL-Glu_epimerase L-Ala-D/L-Glu epimerase catalyzes the epimerization of L-Ala-D/L-Glu and other dipeptides. The genomic context and the substrate specificity of characterized members of this family from E.coli and B.subtilis indicates a possible role in the metabolism of the murein peptide of peptidoglycan, of which L-Ala-D-Glu is a component. L-Ala-D/L-Glu epimerase is a member of the enolase-superfamily, which is characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=94.08 E-value=4.3 Score=38.12 Aligned_cols=153 Identities=14% Similarity=0.103 Sum_probs=95.1
Q ss_pred CHHHHHHHHHHHHHcCCCeEeCccCcCCC--chHHHHHHHHhcCCCCCeEEEeeeeeccCCCcccccCCCHHHHHHHHHH
Q 018374 40 SEEDGISIIKHAFNKGITFFDTADVYGAH--ANEVLVGKVLKQLPRKKIQLASKFGVVSMAPTSVIVKGTPEYVRSCCEA 117 (357)
Q Consensus 40 ~~~~~~~~l~~A~~~Gin~~DtA~~Yg~g--~sE~~lG~al~~~~R~~~~I~tK~~~~~~~~~~~~~~~~~~~i~~~v~~ 117 (357)
+.++..+.++.+.+.|++.|+.-- |.. ...+.+ +++++.-. ++-|..+... .++.+.. ..+-+
T Consensus 134 ~~~~~~~~~~~~~~~Gf~~iKik~--g~~~~~d~~~v-~~lr~~~g-~~~l~vD~n~----------~~~~~~A-~~~~~ 198 (316)
T cd03319 134 TPEAMAAAAKKAAKRGFPLLKIKL--GGDLEDDIERI-RAIREAAP-DARLRVDANQ----------GWTPEEA-VELLR 198 (316)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEEe--CCChhhHHHHH-HHHHHhCC-CCeEEEeCCC----------CcCHHHH-HHHHH
Confidence 567778888999999999998642 221 112223 23443222 5556555532 2344432 23334
Q ss_pred HHhHhCCCcccEEEeecCCCCCCccccccCCCChhHHHHHHHHHHHcCccc-eEecCCCCHHHHHHHhccCCceEEeccc
Q 018374 118 SLKRLGVDYIDLYYQHRVDPSVPIEDTVCDSLPTSLNIGELKMLVVEGKIK-YIGLSEASPDTIRRAHAVHPITAVQMEW 196 (357)
Q Consensus 118 sL~~Lg~d~iDl~~lH~pd~~~~~~~~~~~~~~~~~~~~aL~~L~~~G~ir-~iGvS~~~~~~l~~~~~~~~~~~~q~~~ 196 (357)
.|+.++ +.++..|-+ .+. ++.+.+|++...|. +.|=+-++.+.++++++....+++|+.-
T Consensus 199 ~l~~~~-----l~~iEeP~~----~~d----------~~~~~~L~~~~~ipIa~~E~~~~~~~~~~~~~~~~~d~v~~~~ 259 (316)
T cd03319 199 ELAELG-----VELIEQPVP----AGD----------DDGLAYLRDKSPLPIMADESCFSAADAARLAGGGAYDGINIKL 259 (316)
T ss_pred HHHhcC-----CCEEECCCC----CCC----------HHHHHHHHhcCCCCEEEeCCCCCHHHHHHHHhcCCCCEEEEec
Confidence 445554 344444422 123 77888898887776 3344457899999999999999999876
Q ss_pred cccc-cchhhhHHHHHHHhCCceeecccCcc
Q 018374 197 SLLT-RDIEEEIIPLCRELGIGIVPYSPLGR 226 (357)
Q Consensus 197 n~~~-~~~~~~~~~~~~~~gi~v~a~spl~~ 226 (357)
+..- -....++..+|+++|+.++.++-+..
T Consensus 260 ~~~GGi~~~~~~~~~a~~~gi~~~~~~~~~~ 290 (316)
T cd03319 260 MKTGGLTEALRIADLARAAGLKVMVGCMVES 290 (316)
T ss_pred cccCCHHHHHHHHHHHHHcCCCEEEECchhh
Confidence 5542 11236889999999999998755543
No 20
>cd03174 DRE_TIM_metallolyase DRE-TIM metallolyase superfamily. The DRE-TIM metallolyase superfamily includes 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM".
Probab=87.22 E-value=11 Score=34.01 Aligned_cols=105 Identities=22% Similarity=0.182 Sum_probs=68.4
Q ss_pred CCCHHHHHHHHHHHHhHhCCCcccEEEeecCCCCCCccccccCCCChhHHHHHHHHHHHcC-ccceEecCCCCHHHHHHH
Q 018374 105 KGTPEYVRSCCEASLKRLGVDYIDLYYQHRVDPSVPIEDTVCDSLPTSLNIGELKMLVVEG-KIKYIGLSEASPDTIRRA 183 (357)
Q Consensus 105 ~~~~~~i~~~v~~sL~~Lg~d~iDl~~lH~pd~~~~~~~~~~~~~~~~~~~~aL~~L~~~G-~ir~iGvS~~~~~~l~~~ 183 (357)
.++.+...+-++. |..+|+++|.+-..-.+......++. ++.++.+++.+ .++...++....+.++.+
T Consensus 15 ~~s~e~~~~i~~~-L~~~GV~~IEvg~~~~~~~~p~~~~~----------~~~i~~l~~~~~~~~~~~l~~~~~~~i~~a 83 (265)
T cd03174 15 TFSTEDKLEIAEA-LDEAGVDSIEVGSGASPKAVPQMEDD----------WEVLRAIRKLVPNVKLQALVRNREKGIERA 83 (265)
T ss_pred CCCHHHHHHHHHH-HHHcCCCEEEeccCcCccccccCCCH----------HHHHHHHHhccCCcEEEEEccCchhhHHHH
Confidence 4566666665554 77899999888775544322112333 88899999998 577667766556667666
Q ss_pred hccCCceEEeccccccc--------c------chhhhHHHHHHHhCCceeec
Q 018374 184 HAVHPITAVQMEWSLLT--------R------DIEEEIIPLCRELGIGIVPY 221 (357)
Q Consensus 184 ~~~~~~~~~q~~~n~~~--------~------~~~~~~~~~~~~~gi~v~a~ 221 (357)
.+.. ++.+++.+..-+ + ..-.+.+.+++++|+.+...
T Consensus 84 ~~~g-~~~i~i~~~~s~~~~~~~~~~~~~~~~~~~~~~i~~a~~~G~~v~~~ 134 (265)
T cd03174 84 LEAG-VDEVRIFDSASETHSRKNLNKSREEDLENAEEAIEAAKEAGLEVEGS 134 (265)
T ss_pred HhCC-cCEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEE
Confidence 6653 566666655441 1 11157788899999887664
No 21
>PRK10550 tRNA-dihydrouridine synthase C; Provisional
Probab=87.11 E-value=27 Score=32.87 Aligned_cols=137 Identities=12% Similarity=0.015 Sum_probs=88.1
Q ss_pred CHHHHHHHHHHHHHcCCCeEeCc--------cCcCCC----chHHHHHHHHhcC---CCCCeEEEeeeeeccCCCccccc
Q 018374 40 SEEDGISIIKHAFNKGITFFDTA--------DVYGAH----ANEVLVGKVLKQL---PRKKIQLASKFGVVSMAPTSVIV 104 (357)
Q Consensus 40 ~~~~~~~~l~~A~~~Gin~~DtA--------~~Yg~g----~sE~~lG~al~~~---~R~~~~I~tK~~~~~~~~~~~~~ 104 (357)
+.++..++.+.+.+.|+..||-- ..||.| ..-+.+.+.++.. ...++-|+.|+....
T Consensus 73 ~p~~~~~aA~~~~~~g~d~IdiN~GCP~~~v~~~g~Gs~Ll~~~~~~~eiv~avr~~~~~~~pVsvKiR~g~-------- 144 (312)
T PRK10550 73 YPQWLAENAARAVELGSWGVDLNCGCPSKTVNGSGGGATLLKDPELIYQGAKAMREAVPAHLPVTVKVRLGW-------- 144 (312)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEeCCCCchHHhcCCCchHhhcCHHHHHHHHHHHHHhcCCCcceEEEEECCC--------
Confidence 67888888888999999999921 146655 3345555555543 222577999986532
Q ss_pred CCCHHHHHHHHHHHHhHhCCCcccEEEeecCCCCCCccccccCCCChhHHHHHHHHHHHcCccceEecCCC-CHHHHHHH
Q 018374 105 KGTPEYVRSCCEASLKRLGVDYIDLYYQHRVDPSVPIEDTVCDSLPTSLNIGELKMLVVEGKIKYIGLSEA-SPDTIRRA 183 (357)
Q Consensus 105 ~~~~~~i~~~v~~sL~~Lg~d~iDl~~lH~pd~~~~~~~~~~~~~~~~~~~~aL~~L~~~G~ir~iGvS~~-~~~~l~~~ 183 (357)
+ +.+. ...+-+.|+..| +|.+-+|.-......... . --|+.+.++++.-.|--||..+. +++..+++
T Consensus 145 ~-~~~~-~~~~a~~l~~~G---vd~i~Vh~Rt~~~~y~g~-----~--~~~~~i~~ik~~~~iPVi~nGdI~t~~da~~~ 212 (312)
T PRK10550 145 D-SGER-KFEIADAVQQAG---ATELVVHGRTKEDGYRAE-----H--INWQAIGEIRQRLTIPVIANGEIWDWQSAQQC 212 (312)
T ss_pred C-CchH-HHHHHHHHHhcC---CCEEEECCCCCccCCCCC-----c--ccHHHHHHHHhhcCCcEEEeCCcCCHHHHHHH
Confidence 1 1122 234555567777 677788875332211100 0 01788888988877888888874 88999999
Q ss_pred hccCCceEEeccc
Q 018374 184 HAVHPITAVQMEW 196 (357)
Q Consensus 184 ~~~~~~~~~q~~~ 196 (357)
++....+.+++-=
T Consensus 213 l~~~g~DgVmiGR 225 (312)
T PRK10550 213 MAITGCDAVMIGR 225 (312)
T ss_pred HhccCCCEEEEcH
Confidence 8888888887743
No 22
>cd03316 MR_like Mandelate racemase (MR)-like subfamily of the enolase superfamily. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. Members of the MR subgroup are mandelate racemase, D-glucarate/L-idarate dehydratase (GlucD), D-altronate/D-mannonate dehydratase , D-galactonate dehydratase (GalD) , D-gluconate dehydratase (GlcD), and L-rhamnonate dehydratase (RhamD).
Probab=86.38 E-value=31 Score=32.85 Aligned_cols=152 Identities=14% Similarity=0.136 Sum_probs=91.6
Q ss_pred CHHHHHHHHHHHHHcCCCeEeCc--cCcCC----CchHHHHHHHHhcCCCCCeEEEeeeeeccCCCcccccCCCHHHHHH
Q 018374 40 SEEDGISIIKHAFNKGITFFDTA--DVYGA----HANEVLVGKVLKQLPRKKIQLASKFGVVSMAPTSVIVKGTPEYVRS 113 (357)
Q Consensus 40 ~~~~~~~~l~~A~~~Gin~~DtA--~~Yg~----g~sE~~lG~al~~~~R~~~~I~tK~~~~~~~~~~~~~~~~~~~i~~ 113 (357)
+.++..+.++.+.+.|++.|-.- ..|.. -...+.+ +++++.-.+++.|...... .++.+...+
T Consensus 139 ~~~~~~~~a~~~~~~Gf~~~Kik~g~~~~~~~~~~~d~~~v-~~ir~~~g~~~~l~vDaN~----------~~~~~~a~~ 207 (357)
T cd03316 139 SPEELAEEAKRAVAEGFTAVKLKVGGPDSGGEDLREDLARV-RAVREAVGPDVDLMVDANG----------RWDLAEAIR 207 (357)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEcCCCCCcchHHHHHHHHHH-HHHHHhhCCCCEEEEECCC----------CCCHHHHHH
Confidence 36777788888899999998642 22210 0112222 3344433345555554311 234444333
Q ss_pred HHHHHHhHhCCCcccEEEeecCCCCCCccccccCCCChhHHHHHHHHHHHcCccc-eEecCCCCHHHHHHHhccCCceEE
Q 018374 114 CCEASLKRLGVDYIDLYYQHRVDPSVPIEDTVCDSLPTSLNIGELKMLVVEGKIK-YIGLSEASPDTIRRAHAVHPITAV 192 (357)
Q Consensus 114 ~v~~sL~~Lg~d~iDl~~lH~pd~~~~~~~~~~~~~~~~~~~~aL~~L~~~G~ir-~iGvS~~~~~~l~~~~~~~~~~~~ 192 (357)
-+ ++|. ..++.+++.|-+. +. ++.+..|++.-.+. ..|=|.++++.+.++++....+++
T Consensus 208 ~~----~~l~--~~~i~~iEqP~~~----~~----------~~~~~~l~~~~~ipi~~dE~~~~~~~~~~~i~~~~~d~v 267 (357)
T cd03316 208 LA----RALE--EYDLFWFEEPVPP----DD----------LEGLARLRQATSVPIAAGENLYTRWEFRDLLEAGAVDII 267 (357)
T ss_pred HH----HHhC--ccCCCeEcCCCCc----cC----------HHHHHHHHHhCCCCEEeccccccHHHHHHHHHhCCCCEE
Confidence 32 3332 2245556665332 23 77888888886665 333345789999999998888999
Q ss_pred ecccccccc-chhhhHHHHHHHhCCceeecc
Q 018374 193 QMEWSLLTR-DIEEEIIPLCRELGIGIVPYS 222 (357)
Q Consensus 193 q~~~n~~~~-~~~~~~~~~~~~~gi~v~a~s 222 (357)
|+...-.-- ....++...|+++|+.++.++
T Consensus 268 ~~k~~~~GGi~~~~~i~~~a~~~g~~~~~~~ 298 (357)
T cd03316 268 QPDVTKVGGITEAKKIAALAEAHGVRVAPHG 298 (357)
T ss_pred ecCccccCCHHHHHHHHHHHHHcCCeEeccC
Confidence 987655431 123689999999999987764
No 23
>PRK07945 hypothetical protein; Provisional
Probab=85.98 E-value=21 Score=33.92 Aligned_cols=110 Identities=12% Similarity=0.056 Sum_probs=55.4
Q ss_pred HHHHHHHHHHHHHcCCCeEeCccCcC-----CCchHHHHHHHHhcC--CCCCeE-EEeeeeeccCCCcccccCCCHHHHH
Q 018374 41 EEDGISIIKHAFNKGITFFDTADVYG-----AHANEVLVGKVLKQL--PRKKIQ-LASKFGVVSMAPTSVIVKGTPEYVR 112 (357)
Q Consensus 41 ~~~~~~~l~~A~~~Gin~~DtA~~Yg-----~g~sE~~lG~al~~~--~R~~~~-I~tK~~~~~~~~~~~~~~~~~~~i~ 112 (357)
.....++++.|.+.|+..+=.++|.. .+.+...+-..++.. .|+++- |-.+.|.-..-.+ +.+.+..
T Consensus 110 ~~~~ee~v~~Ai~~Gl~~i~~TDH~p~~~~~~~~~~~~l~~y~~~i~~l~~ky~~I~Il~GiE~d~~~----~g~~~~~- 184 (335)
T PRK07945 110 GSPIEEMARTAAALGHEYCALTDHSPRLTVANGLSAERLRKQLDVVAELNEELAPFRILTGIEVDILD----DGSLDQE- 184 (335)
T ss_pred CCCHHHHHHHHHHCCCCEEEEeCCCCCccCCCCCCHHHHHHHHHHHHHHHHhcCCceEEEEeEecccC----CCCcchh-
Confidence 34578999999999999886555532 123333333333221 111100 3334443221100 1112222
Q ss_pred HHHHHHHhHhCCCcccEEEeecCCCCCCccccccCCCChhHHHHHHHHHHHcCccceEec
Q 018374 113 SCCEASLKRLGVDYIDLYYQHRVDPSVPIEDTVCDSLPTSLNIGELKMLVVEGKIKYIGL 172 (357)
Q Consensus 113 ~~v~~sL~~Lg~d~iDl~~lH~pd~~~~~~~~~~~~~~~~~~~~aL~~L~~~G~ir~iGv 172 (357)
++.|+. .||+ +..+|+..... .+.. .+.|.++.+.+.+.-+|=
T Consensus 185 ---~~~l~~--~D~v-IgSvH~~~~~~-~~~~----------~~~l~~ai~~~~~dvlgH 227 (335)
T PRK07945 185 ---PELLDR--LDVV-VASVHSKLRMD-AAAM----------TRRMLAAVANPHTDVLGH 227 (335)
T ss_pred ---HHHHHh--CCEE-EEEeecCCCCC-HHHH----------HHHHHHHhcCCCCeEEec
Confidence 233333 4665 67889863321 1222 677777777888777774
No 24
>PRK08609 hypothetical protein; Provisional
Probab=82.27 E-value=22 Score=36.50 Aligned_cols=149 Identities=15% Similarity=0.171 Sum_probs=79.0
Q ss_pred HHHHHHHHHHcCCCeEeCccCcC-----CCchHHHHHHHHhc---C----CCCCeEEEeeeeeccCCCcccccCCCHHHH
Q 018374 44 GISIIKHAFNKGITFFDTADVYG-----AHANEVLVGKVLKQ---L----PRKKIQLASKFGVVSMAPTSVIVKGTPEYV 111 (357)
Q Consensus 44 ~~~~l~~A~~~Gin~~DtA~~Yg-----~g~sE~~lG~al~~---~----~R~~~~I~tK~~~~~~~~~~~~~~~~~~~i 111 (357)
..++++.|.+.|+.+|=.++|+. .|.+...+-..++. . ..=++++..-+.... +..
T Consensus 351 leemv~~A~~~Gl~~i~iTdH~~~~~~~~~~~~~~l~~~~~ei~~l~~~~~~i~Il~GiEv~i~~------------~g~ 418 (570)
T PRK08609 351 IEEMVEACIAKGYEYMAITDHSQYLKVANGLTEERLLEQAEEIKALNEKYPEIDILSGIEMDILP------------DGS 418 (570)
T ss_pred HHHHHHHHHHCCCCEEEEeCCCCCccccCCCCHHHHHHHHHHHHHHHHhcCCCeEEEEEEEeecC------------Ccc
Confidence 56699999999999998887762 23444433333222 1 111333333333321 111
Q ss_pred HHHHHHHHhHhCCCcccEEEeecCCCCCCccccccCCCChhHHHHHHHHHHHcCccceEecCC---------C--CHHHH
Q 018374 112 RSCCEASLKRLGVDYIDLYYQHRVDPSVPIEDTVCDSLPTSLNIGELKMLVVEGKIKYIGLSE---------A--SPDTI 180 (357)
Q Consensus 112 ~~~v~~sL~~Lg~d~iDl~~lH~pd~~~~~~~~~~~~~~~~~~~~aL~~L~~~G~ir~iGvS~---------~--~~~~l 180 (357)
..-.+..|+. .||+ +.-+|++- ..+.++. ++.+.++.+.|.+--||=-. + +.+.+
T Consensus 419 ~d~~~~~L~~--~D~v-I~SvH~~~-~~~~~~~----------~~~l~~a~~~~~~dILaHpd~rli~~~~~~~~d~~~i 484 (570)
T PRK08609 419 LDYDDEVLAE--LDYV-IAAIHSSF-SQSEEEI----------MKRLENACRNPYVRLIAHPTGRLIGRRDGYDVNIDQL 484 (570)
T ss_pred hhhcHHHHHh--hCEE-EEEeecCC-CCCHHHH----------HHHHHHHhcCCCceEEECCCccccccCCCchHHHHHH
Confidence 2222334444 4666 77889752 2222333 78888888888877665433 1 11222
Q ss_pred HHHhccCCceEEeccccccccchhhhHHHHHHHhCCcee
Q 018374 181 RRAHAVHPITAVQMEWSLLTRDIEEEIIPLCRELGIGIV 219 (357)
Q Consensus 181 ~~~~~~~~~~~~q~~~n~~~~~~~~~~~~~~~~~gi~v~ 219 (357)
.+++.... .++|+.-+.+.......++..|.+.|+.+.
T Consensus 485 ~~~a~~~G-~~lEINa~~~r~~~~~~~~~~~~e~Gv~i~ 522 (570)
T PRK08609 485 IELAKETN-TALELNANPNRLDLSAEHLKKAQEAGVKLA 522 (570)
T ss_pred HHHHHHhC-CEEEEcCCccccCccHHHHHHHHHcCCEEE
Confidence 22322223 245555554433334578888888887643
No 25
>PRK08392 hypothetical protein; Provisional
Probab=81.60 E-value=29 Score=30.58 Aligned_cols=149 Identities=17% Similarity=0.152 Sum_probs=71.1
Q ss_pred HHHHHHHHHHHcCCCeEeCccCcCCCchHHHHHHHHhc---C-CCCCeEEEeeeeeccCCCcccccCCCHHHHHHHHHHH
Q 018374 43 DGISIIKHAFNKGITFFDTADVYGAHANEVLVGKVLKQ---L-PRKKIQLASKFGVVSMAPTSVIVKGTPEYVRSCCEAS 118 (357)
Q Consensus 43 ~~~~~l~~A~~~Gin~~DtA~~Yg~g~sE~~lG~al~~---~-~R~~~~I~tK~~~~~~~~~~~~~~~~~~~i~~~v~~s 118 (357)
...++++.|.+.|++.|=.++|.... ...-+-..+++ . .+.++ ....|.--. +.++. ....++.
T Consensus 15 ~~~e~v~~A~~~Gl~~i~iTdH~~~~-~~~~~~~y~~~i~~l~~~~~i--~il~GiE~~--------~~~~~-~~~~~~~ 82 (215)
T PRK08392 15 SVRDNIAEAERKGLRLVGISDHIHYF-TPSKFNAYINEIRQWGEESEI--VVLAGIEAN--------ITPNG-VDITDDF 82 (215)
T ss_pred CHHHHHHHHHHcCCCEEEEccCCCcc-chhhHHHHHHHHHHHhhccCc--eEEEeEEee--------ecCCc-chhHHHH
Confidence 46899999999999999666554311 11112222222 1 11222 223332211 01111 2233334
Q ss_pred HhHhCCCcccEEEeecCCCCCCccccccCCCChhHHHHHHHHHHHcCccceEecCCC-------C-HHHHHHHhc---cC
Q 018374 119 LKRLGVDYIDLYYQHRVDPSVPIEDTVCDSLPTSLNIGELKMLVVEGKIKYIGLSEA-------S-PDTIRRAHA---VH 187 (357)
Q Consensus 119 L~~Lg~d~iDl~~lH~pd~~~~~~~~~~~~~~~~~~~~aL~~L~~~G~ir~iGvS~~-------~-~~~l~~~~~---~~ 187 (357)
+++ .||+ +..+|.+...... ..-.+.+.++.+.|.+.-+|=-.. + .+.++++++ ..
T Consensus 83 ~~~--~D~v-I~SvH~~~~~~~~----------~~Y~~~~~~~~~~~~~dvlgH~d~~~~~~~~~~~~~~~~i~~~~~~~ 149 (215)
T PRK08392 83 AKK--LDYV-IASVHEWFGRPEH----------HEYIELVKLALMDENVDIIGHFGNSFPYIGYPSEEELKEILDLAEAY 149 (215)
T ss_pred Hhh--CCEE-EEEeecCcCCcHH----------HHHHHHHHHHHhcCCCCEEeCCCccccCCCCchHHHHHHHHHHHHHh
Confidence 443 4665 6678953211111 222677888888888776654321 1 123333222 22
Q ss_pred CceEEeccccccccchhhhHHHHHHHhCCcee
Q 018374 188 PITAVQMEWSLLTRDIEEEIIPLCRELGIGIV 219 (357)
Q Consensus 188 ~~~~~q~~~n~~~~~~~~~~~~~~~~~gi~v~ 219 (357)
. ..++.|-..+.+..++++.|++.|+.++
T Consensus 150 g---~~lEiNt~~~~p~~~~l~~~~~~G~~~~ 178 (215)
T PRK08392 150 G---KAFEISSRYRVPDLEFIRECIKRGIKLT 178 (215)
T ss_pred C---CEEEEeCCCCCCCHHHHHHHHHcCCEEE
Confidence 2 1122222222234578899999887654
No 26
>TIGR00735 hisF imidazoleglycerol phosphate synthase, cyclase subunit.
Probab=81.01 E-value=43 Score=30.33 Aligned_cols=89 Identities=17% Similarity=0.120 Sum_probs=56.4
Q ss_pred HHhHhCCCcccEEEeecCCCCCCccccccCCCChhHHHHHHHHHHHcCccceEecCC-CCHHHHHHHhccCCceEEeccc
Q 018374 118 SLKRLGVDYIDLYYQHRVDPSVPIEDTVCDSLPTSLNIGELKMLVVEGKIKYIGLSE-ASPDTIRRAHAVHPITAVQMEW 196 (357)
Q Consensus 118 sL~~Lg~d~iDl~~lH~pd~~~~~~~~~~~~~~~~~~~~aL~~L~~~G~ir~iGvS~-~~~~~l~~~~~~~~~~~~q~~~ 196 (357)
-|+.+| +|.+.+|..+......... ++.+.++++.-.+.-|.... .+++.+.+++....++.+.+--
T Consensus 163 ~l~~~G---~~~iivt~i~~~g~~~g~~---------~~~~~~i~~~~~ipvia~GGi~s~~di~~~~~~g~~dgv~~g~ 230 (254)
T TIGR00735 163 EVEKLG---AGEILLTSMDKDGTKSGYD---------LELTKAVSEAVKIPVIASGGAGKPEHFYEAFTKGKADAALAAS 230 (254)
T ss_pred HHHHcC---CCEEEEeCcCcccCCCCCC---------HHHHHHHHHhCCCCEEEeCCCCCHHHHHHHHHcCCcceeeEhH
Confidence 344566 5777778765543222221 67777777776677666665 4788899988877677665522
Q ss_pred cccccc-hhhhHHHHHHHhCCce
Q 018374 197 SLLTRD-IEEEIIPLCRELGIGI 218 (357)
Q Consensus 197 n~~~~~-~~~~~~~~~~~~gi~v 218 (357)
-++... ...++...|+++|+.+
T Consensus 231 a~~~~~~~~~~~~~~~~~~gi~~ 253 (254)
T TIGR00735 231 VFHYREITIGEVKEYLAERGIPV 253 (254)
T ss_pred HHhCCCCCHHHHHHHHHHCCCcc
Confidence 222221 1257889999999875
No 27
>cd04731 HisF The cyclase subunit of imidazoleglycerol phosphate synthase (HisF). Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and plants, or peformed by a heterodimer (HisH-glutaminase and HisF-cyclase), like in bacteria.
Probab=80.88 E-value=41 Score=30.07 Aligned_cols=153 Identities=12% Similarity=0.024 Sum_probs=79.1
Q ss_pred CHHHHHHHHHHHHHcCCCeEeCccCcCCCchHHHHHHHHhcCCCCCeEEEeeeeeccC-------CCcccccCCCHHHHH
Q 018374 40 SEEDGISIIKHAFNKGITFFDTADVYGAHANEVLVGKVLKQLPRKKIQLASKFGVVSM-------APTSVIVKGTPEYVR 112 (357)
Q Consensus 40 ~~~~~~~~l~~A~~~Gin~~DtA~~Yg~g~sE~~lG~al~~~~R~~~~I~tK~~~~~~-------~~~~~~~~~~~~~i~ 112 (357)
+.+++.+++ +.|+..+..+...- .+-..+-++.+....+++.++.-+..... ..+......+..
T Consensus 82 s~~d~~~~l----~~G~~~v~ig~~~~--~~p~~~~~i~~~~~~~~i~~~ld~k~~~~~~~~v~~~~~~~~~~~~~~--- 152 (243)
T cd04731 82 SLEDARRLL----RAGADKVSINSAAV--ENPELIREIAKRFGSQCVVVSIDAKRRGDGGYEVYTHGGRKPTGLDAV--- 152 (243)
T ss_pred CHHHHHHHH----HcCCceEEECchhh--hChHHHHHHHHHcCCCCEEEEEEeeecCCCceEEEEcCCceecCCCHH---
Confidence 455555544 46888887665443 23456666666544455665533221100 000000011221
Q ss_pred HHHHHHHhHhCCCcccEEEeecCCCCCCccccccCCCChhHHHHHHHHHHHcCccceEecCCC-CHHHHHHHhccCCceE
Q 018374 113 SCCEASLKRLGVDYIDLYYQHRVDPSVPIEDTVCDSLPTSLNIGELKMLVVEGKIKYIGLSEA-SPDTIRRAHAVHPITA 191 (357)
Q Consensus 113 ~~v~~sL~~Lg~d~iDl~~lH~pd~~~~~~~~~~~~~~~~~~~~aL~~L~~~G~ir~iGvS~~-~~~~l~~~~~~~~~~~ 191 (357)
.+-+.++.+| +|.+.+|..+.....+... ++.++++++.-.+.-|..... +++.++++++....+.
T Consensus 153 -~~~~~l~~~G---~d~i~v~~i~~~g~~~g~~---------~~~i~~i~~~~~~pvia~GGi~~~~di~~~l~~~g~dg 219 (243)
T cd04731 153 -EWAKEVEELG---AGEILLTSMDRDGTKKGYD---------LELIRAVSSAVNIPVIASGGAGKPEHFVEAFEEGGADA 219 (243)
T ss_pred -HHHHHHHHCC---CCEEEEeccCCCCCCCCCC---------HHHHHHHHhhCCCCEEEeCCCCCHHHHHHHHHhCCCCE
Confidence 2223345556 5667777765432222221 777778877766776666654 7888888888766666
Q ss_pred Eeccccccccc-hhhhHHHHHHHh
Q 018374 192 VQMEWSLLTRD-IEEEIIPLCREL 214 (357)
Q Consensus 192 ~q~~~n~~~~~-~~~~~~~~~~~~ 214 (357)
+++---++... ...++..+|++|
T Consensus 220 v~vg~al~~~~~~~~~~~~~~~~~ 243 (243)
T cd04731 220 ALAASIFHFGEYTIAELKEYLAER 243 (243)
T ss_pred EEEeHHHHcCCCCHHHHHHHHhhC
Confidence 66633333322 124566666653
No 28
>cd00308 enolase_like Enolase-superfamily, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion. Enolase superfamily contains different enzymes, like enolases, glutarate-, fucanate- and galactonate dehydratases, o-succinylbenzoate synthase, N-acylamino acid racemase, L-alanine-DL-glutamate epimerase, mandelate racemase, muconate lactonizing enzyme and 3-methylaspartase.
Probab=78.95 E-value=19 Score=31.96 Aligned_cols=73 Identities=14% Similarity=0.100 Sum_probs=54.1
Q ss_pred HHHHHHHHHcCccc-eEecCCCCHHHHHHHhccCCceEEecccccccc-chhhhHHHHHHHhCCceeecccCccc
Q 018374 155 IGELKMLVVEGKIK-YIGLSEASPDTIRRAHAVHPITAVQMEWSLLTR-DIEEEIIPLCRELGIGIVPYSPLGRG 227 (357)
Q Consensus 155 ~~aL~~L~~~G~ir-~iGvS~~~~~~l~~~~~~~~~~~~q~~~n~~~~-~~~~~~~~~~~~~gi~v~a~spl~~G 227 (357)
++.+.+|++...+. +.+=|.++.+.+.+++....++++|+..+..-- ....++..+|+++|+.++.++.+..|
T Consensus 134 ~~~~~~L~~~~~~pIa~dEs~~~~~~~~~~~~~~~~d~~~~k~~~~GGi~~~~~i~~~a~~~gi~~~~~~~~~s~ 208 (229)
T cd00308 134 LEGYAALRRRTGIPIAADESVTTVDDALEALELGAVDILQIKPTRVGGLTESRRAADLAEAFGIRVMVHGTLESS 208 (229)
T ss_pred HHHHHHHHhhCCCCEEeCCCCCCHHHHHHHHHcCCCCEEecCccccCCHHHHHHHHHHHHHcCCEEeecCCCCCH
Confidence 77788888887766 334455678888888888888999987666432 12367889999999999988766543
No 29
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=77.72 E-value=11 Score=36.43 Aligned_cols=83 Identities=13% Similarity=0.122 Sum_probs=51.7
Q ss_pred CHHHHHHHHHHHHHcCCCeEeCccCcCCCchHHHHHHHHhcCCCCCeEEEeeeeeccCCCcccccCCCHHHHHHHHHHHH
Q 018374 40 SEEDGISIIKHAFNKGITFFDTADVYGAHANEVLVGKVLKQLPRKKIQLASKFGVVSMAPTSVIVKGTPEYVRSCCEASL 119 (357)
Q Consensus 40 ~~~~~~~~l~~A~~~Gin~~DtA~~Yg~g~sE~~lG~al~~~~R~~~~I~tK~~~~~~~~~~~~~~~~~~~i~~~v~~sL 119 (357)
+......++++|++.|++++|||.+.. ....+.... .+-.+.+..-+|..++ .+--.....+++--
T Consensus 77 p~~~~~~i~ka~i~~gv~yvDts~~~~---~~~~~~~~a---~~Agit~v~~~G~dPG--------i~nv~a~~a~~~~~ 142 (389)
T COG1748 77 PPFVDLTILKACIKTGVDYVDTSYYEE---PPWKLDEEA---KKAGITAVLGCGFDPG--------ITNVLAAYAAKELF 142 (389)
T ss_pred CchhhHHHHHHHHHhCCCEEEcccCCc---hhhhhhHHH---HHcCeEEEcccCcCcc--------hHHHHHHHHHHHhh
Confidence 345567999999999999999998775 322222222 3455666666665432 22222222222222
Q ss_pred hHhCCCcccEEEeecCCCC
Q 018374 120 KRLGVDYIDLYYQHRVDPS 138 (357)
Q Consensus 120 ~~Lg~d~iDl~~lH~pd~~ 138 (357)
+ .+++||+|..+-|++.
T Consensus 143 ~--~i~si~iy~g~~g~~~ 159 (389)
T COG1748 143 D--EIESIDIYVGGLGEHG 159 (389)
T ss_pred c--cccEEEEEEecCCCCC
Confidence 2 5899999999999765
No 30
>PF05913 DUF871: Bacterial protein of unknown function (DUF871); InterPro: IPR008589 This family consists of several conserved hypothetical proteins from bacteria and archaea. The function of this family is unknown though a number are annotated as outer surface proteins.; PDB: 2P0O_A 1X7F_A.
Probab=76.58 E-value=8 Score=37.09 Aligned_cols=211 Identities=15% Similarity=0.102 Sum_probs=98.5
Q ss_pred CHHHHHHHHHHHHHcCCCeEeCccCcCCCchHHHHH---HHHhcCCCCCeEEEeeeeeccCCCcccccCCCHHHHHHHHH
Q 018374 40 SEEDGISIIKHAFNKGITFFDTADVYGAHANEVLVG---KVLKQLPRKKIQLASKFGVVSMAPTSVIVKGTPEYVRSCCE 116 (357)
Q Consensus 40 ~~~~~~~~l~~A~~~Gin~~DtA~~Yg~g~sE~~lG---~al~~~~R~~~~I~tK~~~~~~~~~~~~~~~~~~~i~~~v~ 116 (357)
+.++..+.++.|.+.|++.+-|+=+..-+..+..+. +.++......+.|..=+.+..-. ....+.+.+
T Consensus 12 ~~~~~~~yi~~a~~~Gf~~iFTSL~ipe~~~~~~~~~~~~l~~~a~~~~~~v~~Disp~~l~----~lg~~~~dl----- 82 (357)
T PF05913_consen 12 SFEENKAYIEKAAKYGFKRIFTSLHIPEDDPEDYLERLKELLKLAKELGMEVIADISPKVLK----KLGISYDDL----- 82 (357)
T ss_dssp -HHHHHHHHHHHHCTTEEEEEEEE---------HHHHHHHHHHHHHHCT-EEEEEE-CCHHH----TTT-BTTBT-----
T ss_pred CHHHHHHHHHHHHHCCCCEEECCCCcCCCCHHHHHHHHHHHHHHHHHCCCEEEEECCHHHHH----HcCCCHHHH-----
Confidence 578899999999999999999997776433333222 22222244556665555432100 001111111
Q ss_pred HHHhHhCCCcccEEEeecCCCCCCccccccCCCChhHHHHHHHHHHHcCccceEecCCCCHHHHHHHhccCC-ceEEecc
Q 018374 117 ASLKRLGVDYIDLYYQHRVDPSVPIEDTVCDSLPTSLNIGELKMLVVEGKIKYIGLSEASPDTIRRAHAVHP-ITAVQME 195 (357)
Q Consensus 117 ~sL~~Lg~d~iDl~~lH~pd~~~~~~~~~~~~~~~~~~~~aL~~L~~~G~ir~iGvS~~~~~~l~~~~~~~~-~~~~q~~ 195 (357)
..+..||++. +=|.. -.. .+.+.+|-++|.--.+=.|+.+.+.+..+++... ++-+..-
T Consensus 83 ~~~~~lGi~~---lRlD~---Gf~--------------~~~ia~ls~ng~~I~LNASti~~~~l~~L~~~~~~~~~i~a~ 142 (357)
T PF05913_consen 83 SFFKELGIDG---LRLDY---GFS--------------GEEIAKLSKNGIKIELNASTITEEELDELIKYGANFSNIIAC 142 (357)
T ss_dssp HHHHHHT-SE---EEESS---S-S--------------CHHHHHHTTT-SEEEEETTT--CCHHHHHCCTT--GGGEEEE
T ss_pred HHHHHcCCCE---EEECC---CCC--------------HHHHHHHHhCCCEEEEECCCCChHHHHHHHHhcCCHHHeEEE
Confidence 1234455332 21111 111 3344555555665556668888888988888653 3333333
Q ss_pred ccccccc-------hhhhHHHHHHHhCCceeecccCccccCCCCCcCCCCCCCcccccCCCCCCCcchhhHHHHHHHHHH
Q 018374 196 WSLLTRD-------IEEEIIPLCRELGIGIVPYSPLGRGLLGGKAVVESLPANSFLISHPRFTGENLGKNKQIYARVENL 268 (357)
Q Consensus 196 ~n~~~~~-------~~~~~~~~~~~~gi~v~a~spl~~G~L~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i 268 (357)
+|.+-+. ...+.-.+.++.|+.+.|+-|-.. ...|. +.+.+|..
T Consensus 143 HNfYPr~~TGLs~~~f~~~n~~~k~~gi~~~AFI~g~~-~~rGP----------l~~GLPTl------------------ 193 (357)
T PF05913_consen 143 HNFYPRPYTGLSEEFFIEKNQLLKEYGIKTAAFIPGDE-NKRGP----------LYEGLPTL------------------ 193 (357)
T ss_dssp ---B-STT-SB-HHHHHHHHHHHHHTT-EEEEEE--SS-S-BTT----------T-S--BSB------------------
T ss_pred ecccCCCCCCCCHHHHHHHHHHHHHCCCcEEEEecCCC-cccCC----------ccCCCCcc------------------
Confidence 4444332 124556788899999999866542 22222 01111111
Q ss_pred HHhcCCChHHHHHHHHHhCCCCeEEecCCC--CHHHHHHHHhc
Q 018374 269 AKRNKCTPAQLSLAWLLRQGDDIVPIPGTT--KIKNLDENIGS 309 (357)
Q Consensus 269 a~~~g~s~~q~al~~~l~~~~v~~~ivG~~--~~~~l~enl~a 309 (357)
++|.--+..+|.+.+...+.+.-|++|=. +.+.+++....
T Consensus 194 -E~hR~~~p~~aa~~L~~~~~iD~V~IGD~~~s~~el~~~~~~ 235 (357)
T PF05913_consen 194 -EKHRNLPPYAAALELFALGLIDDVIIGDPFASEEELKQLAQY 235 (357)
T ss_dssp -GGGTTS-HHHHHHHHHHTTT--EEEE-SC---HHHHHHHHHC
T ss_pred -HHHcCCCHHHHHHHHHhcCCCCEEEECCCcCCHHHHHHHHHH
Confidence 13433445667888888888999999876 44555554444
No 31
>PRK10558 alpha-dehydro-beta-deoxy-D-glucarate aldolase; Provisional
Probab=76.40 E-value=33 Score=31.28 Aligned_cols=68 Identities=10% Similarity=-0.004 Sum_probs=42.5
Q ss_pred HHHHHHHHcCccceEec-CCCCHHHHHHHhccCCceEE--eccccccccchhhhHHHHHHHhCCceeecccC
Q 018374 156 GELKMLVVEGKIKYIGL-SEASPDTIRRAHAVHPITAV--QMEWSLLTRDIEEEIIPLCRELGIGIVPYSPL 224 (357)
Q Consensus 156 ~aL~~L~~~G~ir~iGv-S~~~~~~l~~~~~~~~~~~~--q~~~n~~~~~~~~~~~~~~~~~gi~v~a~spl 224 (357)
..|.+-.++|+. -+|+ ...+...+.+++....+|++ =++.++++...-..++..|+..|+..+..-|-
T Consensus 8 n~lk~~l~~g~~-~~g~~~~~~sp~~~e~~a~~G~D~v~iD~EHg~~~~~~~~~~i~a~~~~g~~~lVRvp~ 78 (256)
T PRK10558 8 NKFKAALAAKQV-QIGCWSALANPITTEVLGLAGFDWLVLDGEHAPNDVSTFIPQLMALKGSASAPVVRVPT 78 (256)
T ss_pred HHHHHHHHcCCc-eEEEEEcCCCcHHHHHHHhcCCCEEEEccccCCCCHHHHHHHHHHHhhcCCCcEEECCC
Confidence 345566666875 4554 33333455555555555555 45777777654467888888888888776544
No 32
>cd03315 MLE_like Muconate lactonizing enzyme (MLE) like subgroup of the enolase superfamily. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and residues that can function as general acid/base catalysts, a Lys-X-Lys motif and another conserved lysine. Despite these conserved residues, the members of the MLE subgroup, like muconate lactonizing enzyme, o-succinylbenzoate synthase (OSBS) and N-acylamino acid racemase (NAAAR), catalyze different reactions.
Probab=75.52 E-value=63 Score=29.29 Aligned_cols=155 Identities=17% Similarity=0.186 Sum_probs=94.2
Q ss_pred CHHHHHHHHHHHHHcCCCeEeCccCcCCCchHHHH--HHHHhcCCCCCeEEEeeeeeccCCCcccccCCCHHHHHHHHHH
Q 018374 40 SEEDGISIIKHAFNKGITFFDTADVYGAHANEVLV--GKVLKQLPRKKIQLASKFGVVSMAPTSVIVKGTPEYVRSCCEA 117 (357)
Q Consensus 40 ~~~~~~~~l~~A~~~Gin~~DtA~~Yg~g~sE~~l--G~al~~~~R~~~~I~tK~~~~~~~~~~~~~~~~~~~i~~~v~~ 117 (357)
+.++..+.++.+.+.|++.|-.-- |. ..++.+ =+++++.-.+++.|..... . .++.+...+-+ +
T Consensus 85 ~~~~~~~~~~~~~~~G~~~~KiKv--g~-~~~~d~~~v~~vr~~~g~~~~l~vDan----~------~~~~~~a~~~~-~ 150 (265)
T cd03315 85 EPAEVAEEARRALEAGFRTFKLKV--GR-DPARDVAVVAALREAVGDDAELRVDAN----R------GWTPKQAIRAL-R 150 (265)
T ss_pred CHHHHHHHHHHHHHCCCCEEEEec--CC-CHHHHHHHHHHHHHhcCCCCEEEEeCC----C------CcCHHHHHHHH-H
Confidence 456677788888999999987432 21 122222 2344443333444433321 1 23444444333 3
Q ss_pred HHhHhCCCcccEEEeecCCCCCCccccccCCCChhHHHHHHHHHHHcCccc-eEecCCCCHHHHHHHhccCCceEEeccc
Q 018374 118 SLKRLGVDYIDLYYQHRVDPSVPIEDTVCDSLPTSLNIGELKMLVVEGKIK-YIGLSEASPDTIRRAHAVHPITAVQMEW 196 (357)
Q Consensus 118 sL~~Lg~d~iDl~~lH~pd~~~~~~~~~~~~~~~~~~~~aL~~L~~~G~ir-~iGvS~~~~~~l~~~~~~~~~~~~q~~~ 196 (357)
.|+.++ +.+++.|-+. +. ++.+.++++.-.+. +.|=+-++.+.+.++++...++++|+..
T Consensus 151 ~l~~~~-----i~~iEeP~~~----~d----------~~~~~~l~~~~~ipia~dE~~~~~~~~~~~i~~~~~d~v~~k~ 211 (265)
T cd03315 151 ALEDLG-----LDYVEQPLPA----DD----------LEGRAALARATDTPIMADESAFTPHDAFRELALGAADAVNIKT 211 (265)
T ss_pred HHHhcC-----CCEEECCCCc----cc----------HHHHHHHHhhCCCCEEECCCCCCHHHHHHHHHhCCCCEEEEec
Confidence 344444 4445655321 22 67788888876665 3344557889999999888899999876
Q ss_pred ccccc-chhhhHHHHHHHhCCceeecccCccc
Q 018374 197 SLLTR-DIEEEIIPLCRELGIGIVPYSPLGRG 227 (357)
Q Consensus 197 n~~~~-~~~~~~~~~~~~~gi~v~a~spl~~G 227 (357)
+..-. ....++...|+++|+.++..+.+.+|
T Consensus 212 ~~~GGi~~~~~~~~~A~~~gi~~~~~~~~~s~ 243 (265)
T cd03315 212 AKTGGLTKAQRVLAVAEALGLPVMVGSMIESG 243 (265)
T ss_pred ccccCHHHHHHHHHHHHHcCCcEEecCccchH
Confidence 65432 22368899999999999987665443
No 33
>cd04740 DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) class 1B FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.
Probab=75.03 E-value=70 Score=29.55 Aligned_cols=161 Identities=14% Similarity=0.143 Sum_probs=93.7
Q ss_pred CHHHHHHHHHHHHHcCCCeEeCc----------cCcCCCchHHHHHHHHhcCCCC-CeEEEeeeeeccCCCcccccCCCH
Q 018374 40 SEEDGISIIKHAFNKGITFFDTA----------DVYGAHANEVLVGKVLKQLPRK-KIQLASKFGVVSMAPTSVIVKGTP 108 (357)
Q Consensus 40 ~~~~~~~~l~~A~~~Gin~~DtA----------~~Yg~g~sE~~lG~al~~~~R~-~~~I~tK~~~~~~~~~~~~~~~~~ 108 (357)
+.++..++.+.+.+.|+..||.- ..|+ .+.+.+-+.++...+. ++-|..|+.+..
T Consensus 100 ~~~~~~~~a~~~~~~G~d~iElN~~cP~~~~~g~~~~--~~~~~~~eiv~~vr~~~~~Pv~vKl~~~~------------ 165 (296)
T cd04740 100 TVEEFVEVAEKLADAGADAIELNISCPNVKGGGMAFG--TDPEAVAEIVKAVKKATDVPVIVKLTPNV------------ 165 (296)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEECCCCCCCCCccccc--CCHHHHHHHHHHHHhccCCCEEEEeCCCc------------
Confidence 56788889999999999999852 2233 3566666766664222 677888985421
Q ss_pred HHHHHHHHHHHhHhCCCcccEEE------eecCCCCCCcccc--c-cC-CCChhHHHHHHHHHHHcCccceEecCCC-CH
Q 018374 109 EYVRSCCEASLKRLGVDYIDLYY------QHRVDPSVPIEDT--V-CD-SLPTSLNIGELKMLVVEGKIKYIGLSEA-SP 177 (357)
Q Consensus 109 ~~i~~~v~~sL~~Lg~d~iDl~~------lH~pd~~~~~~~~--~-~~-~~~~~~~~~aL~~L~~~G~ir~iGvS~~-~~ 177 (357)
+.+ ..+-+.++..|+|.|++.- +|.-. ..+.... . .. .....-.++.+.++++.=.+--||+... ++
T Consensus 166 ~~~-~~~a~~~~~~G~d~i~~~nt~~g~~~~~~~-~~~~~~~~~gg~sg~~~~~~~~~~i~~i~~~~~ipii~~GGI~~~ 243 (296)
T cd04740 166 TDI-VEIARAAEEAGADGLTLINTLKGMAIDIET-RKPILGNVTGGLSGPAIKPIALRMVYQVYKAVEIPIIGVGGIASG 243 (296)
T ss_pred hhH-HHHHHHHHHcCCCEEEEECCCccccccccc-CceeecCCcceecCcccchHHHHHHHHHHHhcCCCEEEECCCCCH
Confidence 122 2333456778877766531 11100 0000000 0 00 0011124777888887666888898885 78
Q ss_pred HHHHHHhccCCceEEeccccccc-cc----hhhhHHHHHHHhCCc
Q 018374 178 DTIRRAHAVHPITAVQMEWSLLT-RD----IEEEIIPLCRELGIG 217 (357)
Q Consensus 178 ~~l~~~~~~~~~~~~q~~~n~~~-~~----~~~~~~~~~~~~gi~ 217 (357)
+.+.+++... .+.+|+-=-++. +. ...++.++.+++|..
T Consensus 244 ~da~~~l~~G-Ad~V~igra~l~~p~~~~~i~~~l~~~~~~~g~~ 287 (296)
T cd04740 244 EDALEFLMAG-ASAVQVGTANFVDPEAFKEIIEGLEAYLDEEGIK 287 (296)
T ss_pred HHHHHHHHcC-CCEEEEchhhhcChHHHHHHHHHHHHHHHHcCCC
Confidence 8898888754 688887433333 11 125666777777643
No 34
>PRK07535 methyltetrahydrofolate:corrinoid/iron-sulfur protein methyltransferase; Validated
Probab=73.29 E-value=43 Score=30.63 Aligned_cols=135 Identities=12% Similarity=0.140 Sum_probs=77.1
Q ss_pred CHHHHHHHHHHHHhHhCCCcccEEEeecCCCCCCccccccCCCChhHHHHHHHHHHHcCccceEecCCCCHHHHHHHhcc
Q 018374 107 TPEYVRSCCEASLKRLGVDYIDLYYQHRVDPSVPIEDTVCDSLPTSLNIGELKMLVVEGKIKYIGLSEASPDTIRRAHAV 186 (357)
Q Consensus 107 ~~~~i~~~v~~sL~~Lg~d~iDl~~lH~pd~~~~~~~~~~~~~~~~~~~~aL~~L~~~G~ir~iGvS~~~~~~l~~~~~~ 186 (357)
+.+.+.+...+.. .-|.+.||+-.- .......+.. ...++.+++.-.+ -|.+-+++++.++++++.
T Consensus 23 d~~~i~~~A~~~~-~~GAdiIDVg~~--~~~~eE~~r~----------~~~v~~l~~~~~~-plsIDT~~~~v~eaaL~~ 88 (261)
T PRK07535 23 DAAFIQKLALKQA-EAGADYLDVNAG--TAVEEEPETM----------EWLVETVQEVVDV-PLCIDSPNPAAIEAGLKV 88 (261)
T ss_pred CHHHHHHHHHHHH-HCCCCEEEECCC--CCchhHHHHH----------HHHHHHHHHhCCC-CEEEeCCCHHHHHHHHHh
Confidence 4555655555543 668899998743 1111112222 5556666554222 378889999999999986
Q ss_pred CCceEEeccccccccchhhhHHHHHHHhCCceeecccCccccCCCCCcCCCCCCCcccccCCCCCCCcchhhHHHHHHHH
Q 018374 187 HPITAVQMEWSLLTRDIEEEIIPLCRELGIGIVPYSPLGRGLLGGKAVVESLPANSFLISHPRFTGENLGKNKQIYARVE 266 (357)
Q Consensus 187 ~~~~~~q~~~n~~~~~~~~~~~~~~~~~gi~v~a~spl~~G~L~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 266 (357)
.+=..+-...|..... ..++++.++++|..++...--..|. +...+........+.
T Consensus 89 ~~G~~iINsIs~~~~~-~~~~~~l~~~~g~~vv~m~~~~~g~-----------------------P~t~~~~~~~l~~~v 144 (261)
T PRK07535 89 AKGPPLINSVSAEGEK-LEVVLPLVKKYNAPVVALTMDDTGI-----------------------PKDAEDRLAVAKELV 144 (261)
T ss_pred CCCCCEEEeCCCCCcc-CHHHHHHHHHhCCCEEEEecCCCCC-----------------------CCCHHHHHHHHHHHH
Confidence 2111122333332211 2478999999999998754222221 111233345556666
Q ss_pred HHHHhcCCChHHH
Q 018374 267 NLAKRNKCTPAQL 279 (357)
Q Consensus 267 ~ia~~~g~s~~q~ 279 (357)
+.+.++|+++.++
T Consensus 145 ~~a~~~GI~~~~I 157 (261)
T PRK07535 145 EKADEYGIPPEDI 157 (261)
T ss_pred HHHHHcCCCHhHE
Confidence 7777888866554
No 35
>PF03102 NeuB: NeuB family; InterPro: IPR013132 NeuB is the prokaryotic N-acetylneuraminic acid synthase (Neu5Ac). It catalyses the direct formation of Neu5Ac (the most common sialic acid) by condensation of phosphoenolpyruvate (PEP) and N-acetylmannosamine (ManNAc). This reaction has only been observed in prokaryotes; eukaryotes synthesise the 9-phosphate form, Neu5Ac-9-P, and utilise ManNAc-6-P instead of ManNAc. Such eukaryotic enzymes are not present in this family []. This family also contains SpsE spore coat polysaccharide biosynthesis proteins.; GO: 0016051 carbohydrate biosynthetic process; PDB: 3G8R_B 1XUU_A 1XUZ_A 3CM4_A 2ZDR_A 1VLI_A 2WQP_A.
Probab=72.60 E-value=20 Score=32.35 Aligned_cols=112 Identities=21% Similarity=0.211 Sum_probs=60.4
Q ss_pred CCHHHHHHHHHHHHHcCCCeEeCccCcCCCchHHHHHHH-----------------HhcC--CCCCeEEEeeeeeccCCC
Q 018374 39 VSEEDGISIIKHAFNKGITFFDTADVYGAHANEVLVGKV-----------------LKQL--PRKKIQLASKFGVVSMAP 99 (357)
Q Consensus 39 ~~~~~~~~~l~~A~~~Gin~~DtA~~Yg~g~sE~~lG~a-----------------l~~~--~R~~~~I~tK~~~~~~~~ 99 (357)
.+.++..++.+.+-+.||.||=|.-.-. +-+.+-+. |+.. ....++|+|=.
T Consensus 53 l~~e~~~~L~~~~~~~gi~f~stpfd~~---s~d~l~~~~~~~~KIaS~dl~n~~lL~~~A~tgkPvIlSTG~------- 122 (241)
T PF03102_consen 53 LSEEQHKELFEYCKELGIDFFSTPFDEE---SVDFLEELGVPAYKIASGDLTNLPLLEYIAKTGKPVILSTGM------- 122 (241)
T ss_dssp S-HHHHHHHHHHHHHTT-EEEEEE-SHH---HHHHHHHHT-SEEEE-GGGTT-HHHHHHHHTT-S-EEEE-TT-------
T ss_pred CCHHHHHHHHHHHHHcCCEEEECCCCHH---HHHHHHHcCCCEEEeccccccCHHHHHHHHHhCCcEEEECCC-------
Confidence 4788999999999999999996664332 22222111 0000 23334555432
Q ss_pred cccccCCCHHHHHHHHHHHHhHhCCCcccEEEeecCCCC-CCccccccCCCChhHHHHHHHHHHHcCccceEecCCCCHH
Q 018374 100 TSVIVKGTPEYVRSCCEASLKRLGVDYIDLYYQHRVDPS-VPIEDTVCDSLPTSLNIGELKMLVVEGKIKYIGLSEASPD 178 (357)
Q Consensus 100 ~~~~~~~~~~~i~~~v~~sL~~Lg~d~iDl~~lH~pd~~-~~~~~~~~~~~~~~~~~~aL~~L~~~G~ir~iGvS~~~~~ 178 (357)
.+-+.|.++++-..++-+ -++.++|+...+ .+.++.+ ++.|..|++.=- --||.|.|+..
T Consensus 123 ------stl~EI~~Av~~~~~~~~---~~l~llHC~s~YP~~~e~~N---------L~~i~~L~~~f~-~~vG~SDHt~g 183 (241)
T PF03102_consen 123 ------STLEEIERAVEVLREAGN---EDLVLLHCVSSYPTPPEDVN---------LRVIPTLKERFG-VPVGYSDHTDG 183 (241)
T ss_dssp --------HHHHHHHHHHHHHHCT-----EEEEEE-SSSS--GGG-----------TTHHHHHHHHST-SEEEEEE-SSS
T ss_pred ------CCHHHHHHHHHHHHhcCC---CCEEEEecCCCCCCChHHcC---------hHHHHHHHHhcC-CCEEeCCCCCC
Confidence 245667777666544443 689999999654 5566664 777888876433 46899998764
Q ss_pred H
Q 018374 179 T 179 (357)
Q Consensus 179 ~ 179 (357)
.
T Consensus 184 ~ 184 (241)
T PF03102_consen 184 I 184 (241)
T ss_dssp S
T ss_pred c
Confidence 3
No 36
>PRK10128 2-keto-3-deoxy-L-rhamnonate aldolase; Provisional
Probab=70.47 E-value=63 Score=29.67 Aligned_cols=66 Identities=14% Similarity=0.016 Sum_probs=39.9
Q ss_pred HHHHHHHcCccceEec-CCCCHHHHHHHhccCCceEE--eccccccccchhhhHHHHHHHhCCceeeccc
Q 018374 157 ELKMLVVEGKIKYIGL-SEASPDTIRRAHAVHPITAV--QMEWSLLTRDIEEEIIPLCRELGIGIVPYSP 223 (357)
Q Consensus 157 aL~~L~~~G~ir~iGv-S~~~~~~l~~~~~~~~~~~~--q~~~n~~~~~~~~~~~~~~~~~gi~v~a~sp 223 (357)
.|.+..++|+.- +|+ ...+.-.+.+++....+|++ =.+.++++......++..++..|+..+..-|
T Consensus 8 ~lk~~L~~G~~~-~G~~~~~~sp~~~E~~a~~GfD~v~iD~EHg~~~~~~l~~~i~a~~~~g~~~lVRvp 76 (267)
T PRK10128 8 PFKEGLRKGEVQ-IGLWLSSTTSYMAEIAATSGYDWLLIDGEHAPNTIQDLYHQLQAIAPYASQPVIRPV 76 (267)
T ss_pred HHHHHHHcCCce-EEEEecCCCcHHHHHHHHcCCCEEEEccccCCCCHHHHHHHHHHHHhcCCCeEEECC
Confidence 355566668764 554 33333344455555556655 4577888765445677888888887776544
No 37
>cd02930 DCR_FMN 2,4-dienoyl-CoA reductase (DCR) FMN-binding domain. DCR in E. coli is an iron-sulfur flavoenzyme which contains FMN, FAD, and a 4Fe-4S cluster. It is also a monomer, unlike that of its eukaryotic counterparts which form homotetramers and lack the flavin and iron-sulfur cofactors. Metabolism of unsaturated fatty acids requires auxiliary enzymes in addition to those used in b-oxidation. After a given number of cycles through the b-oxidation pathway, those unsaturated fatty acyl-CoAs with double bonds at even-numbered carbon positions contain 2-trans, 4-cis double bonds that can not be modified by enoyl-CoA hydratase. DCR utilizes NADPH to remove the C4-C5 double bond. DCR can catalyze the reduction of both natural fatty acids with cis double bonds, as well as substrates containing trans double bonds. The reaction is initiated by hybrid transfer from NADPH to FAD, which in turn transfers electrons, one at a time, to FMN via the 4Fe-4S cluster. The fully reduced FMN provi
Probab=70.41 E-value=1e+02 Score=29.42 Aligned_cols=102 Identities=17% Similarity=0.144 Sum_probs=55.5
Q ss_pred CCCCeEEEeeeeeccCCCcccccCCCHHHHHHHHHHHHhHhCCCcccEE-Eeec-CCCCCCccccccCCCChhHHHHHHH
Q 018374 82 PRKKIQLASKFGVVSMAPTSVIVKGTPEYVRSCCEASLKRLGVDYIDLY-YQHR-VDPSVPIEDTVCDSLPTSLNIGELK 159 (357)
Q Consensus 82 ~R~~~~I~tK~~~~~~~~~~~~~~~~~~~i~~~v~~sL~~Lg~d~iDl~-~lH~-pd~~~~~~~~~~~~~~~~~~~~aL~ 159 (357)
-..++.|..|++......+ ..+.+... .+-+-|+.+|+|+|++- -.|. +.+..... . .-..-....+
T Consensus 201 vG~d~~v~iRi~~~D~~~~----g~~~~e~~-~i~~~Le~~G~d~i~vs~g~~e~~~~~~~~~-~-----~~~~~~~~~~ 269 (353)
T cd02930 201 VGEDFIIIYRLSMLDLVEG----GSTWEEVV-ALAKALEAAGADILNTGIGWHEARVPTIATS-V-----PRGAFAWATA 269 (353)
T ss_pred cCCCceEEEEecccccCCC----CCCHHHHH-HHHHHHHHcCCCEEEeCCCcCCCCCcccccc-C-----CchhhHHHHH
Confidence 4467888888875432211 13444433 34445788898887762 1232 11100000 0 0000134456
Q ss_pred HHHHcCccceEecCC-CCHHHHHHHhccCCceEEec
Q 018374 160 MLVVEGKIKYIGLSE-ASPDTIRRAHAVHPITAVQM 194 (357)
Q Consensus 160 ~L~~~G~ir~iGvS~-~~~~~l~~~~~~~~~~~~q~ 194 (357)
++++.=.+-=++... .+++.++++++....|.+++
T Consensus 270 ~ik~~v~iPVi~~G~i~~~~~a~~~i~~g~~D~V~~ 305 (353)
T cd02930 270 KLKRAVDIPVIASNRINTPEVAERLLADGDADMVSM 305 (353)
T ss_pred HHHHhCCCCEEEcCCCCCHHHHHHHHHCCCCChhHh
Confidence 666665666666655 47888899988877777765
No 38
>cd03321 mandelate_racemase Mandelate racemase (MR) catalyzes the Mg2+-dependent 1,1-proton transfer reaction that interconverts the enantiomers of mandelic acid. MR is the first enzyme in the bacterial pathway that converts mandelic acid to benzoic acid and allows this pathway to utilize either enantiomer of mandelate. MR belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=67.74 E-value=1.2e+02 Score=29.02 Aligned_cols=152 Identities=11% Similarity=0.044 Sum_probs=87.3
Q ss_pred CHHHHHHHHHHHHHcCCCeEeCccCcCCCchHHHHHHHHhcCCCCCeEEEeeeeeccCCCcccccCCCHHHHHHHHHHHH
Q 018374 40 SEEDGISIIKHAFNKGITFFDTADVYGAHANEVLVGKVLKQLPRKKIQLASKFGVVSMAPTSVIVKGTPEYVRSCCEASL 119 (357)
Q Consensus 40 ~~~~~~~~l~~A~~~Gin~~DtA~~Yg~g~sE~~lG~al~~~~R~~~~I~tK~~~~~~~~~~~~~~~~~~~i~~~v~~sL 119 (357)
+.++..+-+..+.+.|++.|=.=-...+-..+.-.=+++++.-.+++.|..-.. + .++.+...+-++ .|
T Consensus 141 ~~~~~~~~a~~~~~~Gf~~~KiKvg~~~~~~d~~~v~air~~~g~~~~l~vDaN----~------~~~~~~A~~~~~-~l 209 (355)
T cd03321 141 GAKLATERAVTAAEEGFHAVKTKIGYPTADEDLAVVRSIRQAVGDGVGLMVDYN----Q------SLTVPEAIERGQ-AL 209 (355)
T ss_pred hHHHHHHHHHHHHHhhhHHHhhhcCCCChHhHHHHHHHHHHhhCCCCEEEEeCC----C------CcCHHHHHHHHH-HH
Confidence 345566666777788988764311111101122222345553334554443221 1 345554333333 23
Q ss_pred hHhCCCcccEEEeecCCCCCCccccccCCCChhHHHHHHHHHHHcCccc-eEecCCCCHHHHHHHhccCCceEEeccccc
Q 018374 120 KRLGVDYIDLYYQHRVDPSVPIEDTVCDSLPTSLNIGELKMLVVEGKIK-YIGLSEASPDTIRRAHAVHPITAVQMEWSL 198 (357)
Q Consensus 120 ~~Lg~d~iDl~~lH~pd~~~~~~~~~~~~~~~~~~~~aL~~L~~~G~ir-~iGvS~~~~~~l~~~~~~~~~~~~q~~~n~ 198 (357)
+.+ ++.++..|-.. +. ++.+.+|+++--|. +.|=+.++...+..+++...++++|+..+-
T Consensus 210 ~~~-----~i~~iEeP~~~----~d----------~~~~~~l~~~~~ipia~~E~~~~~~~~~~~i~~~~~d~i~~~~~~ 270 (355)
T cd03321 210 DQE-----GLTWIEEPTLQ----HD----------YEGHARIASALRTPVQMGENWLGPEEMFKALSAGACDLVMPDLMK 270 (355)
T ss_pred HcC-----CCCEEECCCCC----cC----------HHHHHHHHHhcCCCEEEcCCCcCHHHHHHHHHhCCCCeEecCHhh
Confidence 443 45556665332 22 78888888875544 344455789999999998888999987665
Q ss_pred ccc-chhhhHHHHHHHhCCceeec
Q 018374 199 LTR-DIEEEIIPLCRELGIGIVPY 221 (357)
Q Consensus 199 ~~~-~~~~~~~~~~~~~gi~v~a~ 221 (357)
.-- ....++..+|+.+|+.++.+
T Consensus 271 ~GGit~~~~ia~~A~~~gi~~~~h 294 (355)
T cd03321 271 IGGVTGWLRASALAEQAGIPMSSH 294 (355)
T ss_pred hCCHHHHHHHHHHHHHcCCeeccc
Confidence 432 12368899999999998643
No 39
>TIGR03239 GarL 2-dehydro-3-deoxyglucarate aldolase. In E. coli this enzyme (GarL, ) 2-dehydro-3-deoxyglucarate aldolase acts in the catabolism of several sugars including D-galactarate, D-glucarate and L-idarate. In fact, 5-dehydro-4-deoxy-D-glucarate aldolase is a synonym for this enzyme as it is unclear in the literature whether the enzyme acts on only one of these or, as seems likely, has no preference. (Despite the apparent large difference in substrate stucture indicated by their names, 2-DH-3DO- and 5-DH-4DO-glucarate differ only by the chirality of most central hydroxyl-bearing carbon and is alternately named 2-DH-3DO-galactarate.) The reported product of D-galactarate dehydratase (4.2.1.42) is the 5DH-4DO-glucarate isomer and this enzyme is found proximal to the aldolase in many genomes (GenProp0714) where no epimerase is known. Similarly, the product of D-glucarate dehydratase (4.2.1.40) is again the 5-DH-4DO isomer, so the provenance of the 2-DH-3DO-glucarate isomer for which
Probab=67.17 E-value=66 Score=29.18 Aligned_cols=66 Identities=9% Similarity=-0.049 Sum_probs=39.2
Q ss_pred HHHHHHcCccceEec-CCCCHHHHHHHhccCCceEE--eccccccccchhhhHHHHHHHhCCceeecccC
Q 018374 158 LKMLVVEGKIKYIGL-SEASPDTIRRAHAVHPITAV--QMEWSLLTRDIEEEIIPLCRELGIGIVPYSPL 224 (357)
Q Consensus 158 L~~L~~~G~ir~iGv-S~~~~~~l~~~~~~~~~~~~--q~~~n~~~~~~~~~~~~~~~~~gi~v~a~spl 224 (357)
|.+-.++|+. .+|+ .+.+.-.+.+++....+|++ =++.++++...-..++..++..|+..+..-|-
T Consensus 3 lk~~l~~g~~-~~G~~~~~~sp~~~e~~a~~G~D~v~iD~EHg~~~~~~~~~~~~a~~~~g~~~~VRvp~ 71 (249)
T TIGR03239 3 FRQDLLARET-LIGCWSALGNPITTEVLGLAGFDWLLLDGEHAPNDVLTFIPQLMALKGSASAPVVRPPW 71 (249)
T ss_pred HHHHHHcCCc-eEEEEEcCCCcHHHHHHHhcCCCEEEEecccCCCCHHHHHHHHHHHhhcCCCcEEECCC
Confidence 3444455764 3554 33333345555555555555 45778877654467777888888887776544
No 40
>PRK13958 N-(5'-phosphoribosyl)anthranilate isomerase; Provisional
Probab=65.47 E-value=14 Score=32.58 Aligned_cols=66 Identities=17% Similarity=0.184 Sum_probs=44.1
Q ss_pred HHhHhCCCcccEEEeecCCCCCCcc-ccccCCCChhHHHHHHHHHHHcCccceEecC-CCCHHHHHHHhccCCceEEecc
Q 018374 118 SLKRLGVDYIDLYYQHRVDPSVPIE-DTVCDSLPTSLNIGELKMLVVEGKIKYIGLS-EASPDTIRRAHAVHPITAVQME 195 (357)
Q Consensus 118 sL~~Lg~d~iDl~~lH~pd~~~~~~-~~~~~~~~~~~~~~aL~~L~~~G~ir~iGvS-~~~~~~l~~~~~~~~~~~~q~~ 195 (357)
.+..+|+|++-+++... ....+. +. ...|.... .+.++.+||. |.+++.+.++.+..+++++|++
T Consensus 16 ~~~~~GaD~iGfIf~~~--SpR~V~~~~----------a~~i~~~~-~~~~~~VgVf~~~~~~~i~~~~~~~~~d~vQLH 82 (207)
T PRK13958 16 AASQLPIDAIGFIHYEK--SKRHQTITQ----------IKKLASAV-PNHIDKVCVVVNPDLTTIEHILSNTSINTIQLH 82 (207)
T ss_pred HHHHcCCCEEEEecCCC--CcccCCHHH----------HHHHHHhC-CCCCCEEEEEeCCCHHHHHHHHHhCCCCEEEEC
Confidence 34569999999874332 222221 11 33333322 3568889996 6799999999999999999987
Q ss_pred c
Q 018374 196 W 196 (357)
Q Consensus 196 ~ 196 (357)
-
T Consensus 83 G 83 (207)
T PRK13958 83 G 83 (207)
T ss_pred C
Confidence 4
No 41
>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins. Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].
Probab=65.44 E-value=18 Score=31.38 Aligned_cols=151 Identities=17% Similarity=0.153 Sum_probs=92.5
Q ss_pred HHHHHHHHHcCCCeEeCccCcCCCchHHHHHHHHhcCCCCCeEEEeeeeeccCCCcccccCCCHHHHHHHHHHHHhH---
Q 018374 45 ISIIKHAFNKGITFFDTADVYGAHANEVLVGKVLKQLPRKKIQLASKFGVVSMAPTSVIVKGTPEYVRSCCEASLKR--- 121 (357)
Q Consensus 45 ~~~l~~A~~~Gin~~DtA~~Yg~g~sE~~lG~al~~~~R~~~~I~tK~~~~~~~~~~~~~~~~~~~i~~~v~~sL~~--- 121 (357)
.+++...++-|-+.+|-+-..| .+-+.|++ .+ + ++... .+.+.+.+.+++.+-+.-
T Consensus 4 ~~~I~~~I~pgsrVLDLGCGdG------~LL~~L~~-~k-~----v~g~G---------vEid~~~v~~cv~rGv~Viq~ 62 (193)
T PF07021_consen 4 LQIIAEWIEPGSRVLDLGCGDG------ELLAYLKD-EK-Q----VDGYG---------VEIDPDNVAACVARGVSVIQG 62 (193)
T ss_pred HHHHHHHcCCCCEEEecCCCch------HHHHHHHH-hc-C----CeEEE---------EecCHHHHHHHHHcCCCEEEC
Confidence 3566777888889999664333 24455554 11 1 11111 145677777776654443
Q ss_pred --------hCCCcccEEEeecCCCCCCccccccCCCChhHHHHHHHHHHHcCccceEecCCCCHHHHHHHh--ccCCceE
Q 018374 122 --------LGVDYIDLYYQHRVDPSVPIEDTVCDSLPTSLNIGELKMLVVEGKIKYIGLSEASPDTIRRAH--AVHPITA 191 (357)
Q Consensus 122 --------Lg~d~iDl~~lH~pd~~~~~~~~~~~~~~~~~~~~aL~~L~~~G~ir~iGvS~~~~~~l~~~~--~~~~~~~ 191 (357)
..-+..|.+.+..- + +........|+++..-|+--=|++.||.-+....-+ ..--+..
T Consensus 63 Dld~gL~~f~d~sFD~VIlsqt-----L-------Q~~~~P~~vL~EmlRVgr~~IVsFPNFg~W~~R~~l~~~GrmPvt 130 (193)
T PF07021_consen 63 DLDEGLADFPDQSFDYVILSQT-----L-------QAVRRPDEVLEEMLRVGRRAIVSFPNFGHWRNRLQLLLRGRMPVT 130 (193)
T ss_pred CHHHhHhhCCCCCccEEehHhH-----H-------HhHhHHHHHHHHHHHhcCeEEEEecChHHHHHHHHHHhcCCCCCC
Confidence 33334444433221 1 111223566888888898888999999777654433 3333455
Q ss_pred Eeccccccccc-h----hhhHHHHHHHhCCceeecccCcccc
Q 018374 192 VQMEWSLLTRD-I----EEEIIPLCRELGIGIVPYSPLGRGL 228 (357)
Q Consensus 192 ~q~~~n~~~~~-~----~~~~~~~~~~~gi~v~a~spl~~G~ 228 (357)
-.++|+-++.. . -.++.++|++.|+.+.-..++..+.
T Consensus 131 ~~lPy~WYdTPNih~~Ti~DFe~lc~~~~i~I~~~~~~~~~~ 172 (193)
T PF07021_consen 131 KALPYEWYDTPNIHLCTIKDFEDLCRELGIRIEERVFLDGGR 172 (193)
T ss_pred CCCCCcccCCCCcccccHHHHHHHHHHCCCEEEEEEEEcCCC
Confidence 67788877753 1 1789999999999999998887654
No 42
>COG1140 NarY Nitrate reductase beta subunit [Energy production and conversion]
Probab=65.43 E-value=2.9 Score=39.72 Aligned_cols=57 Identities=18% Similarity=0.292 Sum_probs=40.3
Q ss_pred HHHcCccceEecCCCCHHHHHHHhccCC-ceEEeccccccccchhhhHHHHHHHhCCc
Q 018374 161 LVVEGKIKYIGLSEASPDTIRRAHAVHP-ITAVQMEWSLLTRDIEEEIIPLCRELGIG 217 (357)
Q Consensus 161 L~~~G~ir~iGvS~~~~~~l~~~~~~~~-~~~~q~~~n~~~~~~~~~~~~~~~~~gi~ 217 (357)
.-=-|+||++||--++.+++.++.+... -+..+.+..++-...+..+++.+++.||+
T Consensus 260 eTCVGriRYlGVlLYDaDrv~eaAs~~~e~dly~~Q~~ifLDP~DP~Vi~~A~k~Gip 317 (513)
T COG1140 260 ETCVGRIRYLGVLLYDADRVEEAASTENEKDLYERQLDVFLDPHDPAVIEQARKDGIP 317 (513)
T ss_pred hhhhcceeeeeeeeecHHHHHHhhcCccHHHHHHHHHhhhcCCCCHHHHHHHHHcCCc
Confidence 3446999999999999999999877643 23444455555444455778888888876
No 43
>cd03318 MLE Muconate Lactonizing Enzyme (MLE), an homooctameric enzyme, catalyses the conversion of cis,cis-muconate (CCM) to muconolactone (ML) in the catechol branch of the beta-ketoadipate pathway. This pathway is used in soil microbes to breakdown lignin-derived aromatics, catechol and protocatechuate, to citric acid cycle intermediates. Some bacterial species are also capable of dehalogenating chloroaromatic compounds by the action of chloromuconate lactonizing enzymes (Cl-MLEs). MLEs are members of the enolase superfamily characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and that is stabilized by coordination to the essential Mg2+ ion.
Probab=65.40 E-value=37 Score=32.47 Aligned_cols=72 Identities=11% Similarity=0.105 Sum_probs=53.2
Q ss_pred HHHHHHHHHHcCccc-eEecCCCCHHHHHHHhccCCceEEecccccccc-chhhhHHHHHHHhCCceeecccCc
Q 018374 154 NIGELKMLVVEGKIK-YIGLSEASPDTIRRAHAVHPITAVQMEWSLLTR-DIEEEIIPLCRELGIGIVPYSPLG 225 (357)
Q Consensus 154 ~~~aL~~L~~~G~ir-~iGvS~~~~~~l~~~~~~~~~~~~q~~~n~~~~-~~~~~~~~~~~~~gi~v~a~spl~ 225 (357)
.++.+.+|+++..+. +.|=+-++...+..+++...++++|+.....-- ....++..+|+++|+.++..+...
T Consensus 227 ~~~~~~~l~~~~~~pia~dE~~~~~~~~~~~i~~~~~d~~~~d~~~~GGit~~~~~~~~a~~~gi~~~~~~~~~ 300 (365)
T cd03318 227 NLDGLARLRSRNRVPIMADESVSGPADAFELARRGAADVFSLKIAKSGGLRRAQKVAAIAEAAGIALYGGTMLE 300 (365)
T ss_pred cHHHHHHHHhhcCCCEEcCcccCCHHHHHHHHHhCCCCeEEEeecccCCHHHHHHHHHHHHHcCCceeecCcch
Confidence 378888888886665 555566789999999988888888886555421 123688999999999988654343
No 44
>cd00423 Pterin_binding Pterin binding enzymes. This family includes dihydropteroate synthase (DHPS) and cobalamin-dependent methyltransferases such as methyltetrahydrofolate, corrinoid iron-sulfur protein methyltransferase (MeTr) and methionine synthase (MetH). DHPS, a functional homodimer, catalyzes the condensation of p-aminobenzoic acid (pABA) in the de novo biosynthesis of folate, which is an essential cofactor in both nucleic acid and protein biosynthesis. Prokaryotes (and some lower eukaryotes) must synthesize folate de novo, while higher eukaryotes are able to utilize dietary folate and therefore lack DHPS. Sulfonamide drugs, which are substrate analogs of pABA, target DHPS. Cobalamin-dependent methyltransferases catalyze the transfer of a methyl group via a methyl- cob(III)amide intermediate. These include MeTr, a functional heterodimer, and the folate binding domain of MetH.
Probab=65.27 E-value=93 Score=28.23 Aligned_cols=107 Identities=19% Similarity=0.142 Sum_probs=65.7
Q ss_pred CCHHHHHHHHHHHHhHhCCCcccEEE-eecCCCCCCccccccCCCChhHHHHHHHHHHHcCccceEecCCCCHHHHHHHh
Q 018374 106 GTPEYVRSCCEASLKRLGVDYIDLYY-QHRVDPSVPIEDTVCDSLPTSLNIGELKMLVVEGKIKYIGLSEASPDTIRRAH 184 (357)
Q Consensus 106 ~~~~~i~~~v~~sL~~Lg~d~iDl~~-lH~pd~~~~~~~~~~~~~~~~~~~~aL~~L~~~G~ir~iGvS~~~~~~l~~~~ 184 (357)
.+.+.+.+..++.+ .-|.|.||+-- --+|+.. ++... .........++.+++.-.+ -|.+-+++++.+++++
T Consensus 21 ~~~~~~~~~a~~~~-~~GAdiIDvG~~st~p~~~-~~~~~----~E~~rl~~~v~~l~~~~~~-piSIDT~~~~v~~aaL 93 (258)
T cd00423 21 LSLDKALEHARRMV-EEGADIIDIGGESTRPGAE-PVSVE----EELERVIPVLRALAGEPDV-PISVDTFNAEVAEAAL 93 (258)
T ss_pred CCHHHHHHHHHHHH-HCCCCEEEECCCcCCCCCC-cCCHH----HHHHHHHHHHHHHHhcCCC-eEEEeCCcHHHHHHHH
Confidence 45666666666554 66889999974 3334321 11110 0012235666666655333 3889999999999999
Q ss_pred ccCCceEEeccccccccchhhhHHHHHHHhCCceeeccc
Q 018374 185 AVHPITAVQMEWSLLTRDIEEEIIPLCRELGIGIVPYSP 223 (357)
Q Consensus 185 ~~~~~~~~q~~~n~~~~~~~~~~~~~~~~~gi~v~a~sp 223 (357)
+.+. + +-...+....+ .++++.++++|..++.+..
T Consensus 94 ~~g~-~-iINdis~~~~~--~~~~~l~~~~~~~vV~m~~ 128 (258)
T cd00423 94 KAGA-D-IINDVSGGRGD--PEMAPLAAEYGAPVVLMHM 128 (258)
T ss_pred HhCC-C-EEEeCCCCCCC--hHHHHHHHHcCCCEEEECc
Confidence 8762 2 22333443321 4789999999999988743
No 45
>TIGR01928 menC_lowGC/arch o-succinylbenzoic acid (OSB) synthetase. This model describes the enzyme o-succinylbenzoic acid synthetase (menC) that is involved in one of the steps of the menaquinone biosynthesis pathway. It takes SHCHC and makes it into 2-succinylbenzoate. Included in this model are low GC gram positive bacteria and archaea. Also included in the seed and in the model are enzymes with the com-name of N-acylamino acid racemase (or the more general term, racemase / racemase family), which refers to the enzyme's industrial application as racemases, and not to its biological function as o-succinylbenzoic acid synthetase.
Probab=65.19 E-value=1.2e+02 Score=28.43 Aligned_cols=153 Identities=16% Similarity=0.072 Sum_probs=92.4
Q ss_pred CHHHHHHHHHHHHHcCCCeEeCccCcCCCchHHHHHHHHhcCCCCCeEEEeeeeeccCCCcccccCCCHHHHHHHHHHHH
Q 018374 40 SEEDGISIIKHAFNKGITFFDTADVYGAHANEVLVGKVLKQLPRKKIQLASKFGVVSMAPTSVIVKGTPEYVRSCCEASL 119 (357)
Q Consensus 40 ~~~~~~~~l~~A~~~Gin~~DtA~~Yg~g~sE~~lG~al~~~~R~~~~I~tK~~~~~~~~~~~~~~~~~~~i~~~v~~sL 119 (357)
+.++..+.+..+.+.|++.|=.-- +. ..+..+=+++++.- .++ ++....+. .++.+... . -+.|
T Consensus 132 ~~~~~~~~a~~~~~~Gf~~~KiKv--~~-~~d~~~v~~vr~~~-~~~----~l~vDaN~------~~~~~~a~-~-~~~l 195 (324)
T TIGR01928 132 NDEQMLKQIESLKATGYKRIKLKI--TP-QIMHQLVKLRRLRF-PQI----PLVIDANE------SYDLQDFP-R-LKEL 195 (324)
T ss_pred CHHHHHHHHHHHHHcCCcEEEEEe--CC-chhHHHHHHHHHhC-CCC----cEEEECCC------CCCHHHHH-H-HHHH
Confidence 456677777888899999884321 11 12222223444422 222 22222211 23455432 1 2334
Q ss_pred hHhCCCcccEEEeecCCCCCCccccccCCCChhHHHHHHHHHHHcCccc-eEecCCCCHHHHHHHhccCCceEEeccccc
Q 018374 120 KRLGVDYIDLYYQHRVDPSVPIEDTVCDSLPTSLNIGELKMLVVEGKIK-YIGLSEASPDTIRRAHAVHPITAVQMEWSL 198 (357)
Q Consensus 120 ~~Lg~d~iDl~~lH~pd~~~~~~~~~~~~~~~~~~~~aL~~L~~~G~ir-~iGvS~~~~~~l~~~~~~~~~~~~q~~~n~ 198 (357)
+. .++.++..|-+. +. ++.+.+|+++-.+. +.|=|.++...+..++....++++|+..+-
T Consensus 196 ~~-----~~~~~iEeP~~~----~~----------~~~~~~l~~~~~~pia~dEs~~~~~~~~~~~~~~~~dvi~~d~~~ 256 (324)
T TIGR01928 196 DR-----YQLLYIEEPFKI----DD----------LSMLDELAKGTITPICLDESITSLDDARNLIELGNVKVINIKPGR 256 (324)
T ss_pred hh-----CCCcEEECCCCh----hH----------HHHHHHHHhhcCCCEeeCCCcCCHHHHHHHHHcCCCCEEEeCcch
Confidence 43 355556655321 22 77888888876665 556677899999999998889999987665
Q ss_pred ccc-chhhhHHHHHHHhCCceeecccCccc
Q 018374 199 LTR-DIEEEIIPLCRELGIGIVPYSPLGRG 227 (357)
Q Consensus 199 ~~~-~~~~~~~~~~~~~gi~v~a~spl~~G 227 (357)
.-. ....++...|+.+|+.++..+.+..|
T Consensus 257 ~GGit~~~~~~~~A~~~gi~~~~~~~~es~ 286 (324)
T TIGR01928 257 LGGLTEVQKAIETCREHGAKVWIGGMLETG 286 (324)
T ss_pred hcCHHHHHHHHHHHHHcCCeEEEcceEccc
Confidence 432 12368899999999999887655444
No 46
>PRK06361 hypothetical protein; Provisional
Probab=65.01 E-value=94 Score=27.02 Aligned_cols=187 Identities=14% Similarity=0.086 Sum_probs=94.8
Q ss_pred HHHHHHHHHHHHcCCCeEeCccCcCCCchHHHHH---HHHhcC-CCCCeEEEeeeeeccCCCcccccCCCHHHHHHHHHH
Q 018374 42 EDGISIIKHAFNKGITFFDTADVYGAHANEVLVG---KVLKQL-PRKKIQLASKFGVVSMAPTSVIVKGTPEYVRSCCEA 117 (357)
Q Consensus 42 ~~~~~~l~~A~~~Gin~~DtA~~Yg~g~sE~~lG---~al~~~-~R~~~~I~tK~~~~~~~~~~~~~~~~~~~i~~~v~~ 117 (357)
....++++.|.+.|+..|=-+++.....-...+- +..++. ...++.| ..|..-. ....+. ...+.+
T Consensus 10 ~~~~e~v~~A~~~Gl~~i~iTDH~~~~~~~~~~~~~~~~~~~~~~~~~i~v--~~GiE~~-------~~~~~~-~~~~~~ 79 (212)
T PRK06361 10 LIPSELVRRARVLGYRAIAITDHADASNLEEILEKLVRAAEELELYWDIEV--IPGVELT-------HVPPKL-IPKLAK 79 (212)
T ss_pred CCHHHHHHHHHHcCCCEEEEecCCCCccHHHHHHHHHHHHHHHhhcCCCEE--EEEEEEc-------ccCchh-hchHHH
Confidence 3468999999999999986666654211111111 111111 1112322 3332211 011222 233445
Q ss_pred HHhHhCCCcccEEEeecCCCCCCccccccCCCChhHHHHHHHHHHHcCccceEecCCC-CHHHHHHHhccCCceEEeccc
Q 018374 118 SLKRLGVDYIDLYYQHRVDPSVPIEDTVCDSLPTSLNIGELKMLVVEGKIKYIGLSEA-SPDTIRRAHAVHPITAVQMEW 196 (357)
Q Consensus 118 sL~~Lg~d~iDl~~lH~pd~~~~~~~~~~~~~~~~~~~~aL~~L~~~G~ir~iGvS~~-~~~~l~~~~~~~~~~~~q~~~ 196 (357)
.+.+++ .|+..+|......+.. ...-..+.+.|.+.-+|=-.. ....++.+.+ ..+. +-+..
T Consensus 80 ~~~~~~---~~~~svH~~~~~~~~~------------~~~~~~a~~~~~~dvlaHpd~~~~~~~~~~~~-~~~~-lEin~ 142 (212)
T PRK06361 80 KARDLG---AEIVVVHGETIVEPVE------------EGTNLAAIECEDVDILAHPGLITEEEAELAAE-NGVF-LEITA 142 (212)
T ss_pred HHHHCC---CEEEEECCCCcchhhh------------hhhHHHHHhCCCCcEecCcchhhHHHHHHHHH-cCeE-EEEEC
Confidence 565665 5666899543221111 011144667887766554433 2233333332 2211 11111
Q ss_pred cccccchhhhHHHHHHHhCCceeecccCccccCCCCCcCCCCCCCcccccCCCCCCCcchhhHHHHHHHHHHHHhcCCCh
Q 018374 197 SLLTRDIEEEIIPLCRELGIGIVPYSPLGRGLLGGKAVVESLPANSFLISHPRFTGENLGKNKQIYARVENLAKRNKCTP 276 (357)
Q Consensus 197 n~~~~~~~~~~~~~~~~~gi~v~a~spl~~G~L~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ia~~~g~s~ 276 (357)
..........+++++++.|+.++..|.... +......+.+..++++.|.+.
T Consensus 143 ~~~~~~~~~~~l~~a~~~gi~vv~~SDaH~-----------------------------~~d~~~~~~~~~i~~~~gl~~ 193 (212)
T PRK06361 143 RKGHSLTNGHVARIAREAGAPLVINTDTHA-----------------------------PSDLITYEFARKVALGAGLTE 193 (212)
T ss_pred CCCcccchHHHHHHHHHhCCcEEEECCCCC-----------------------------HHHHHHHHHHHHHHcCCCCCH
Confidence 111222345799999999999876555431 111224678888999999998
Q ss_pred HHHHHHHH
Q 018374 277 AQLSLAWL 284 (357)
Q Consensus 277 ~q~al~~~ 284 (357)
.++.-.+.
T Consensus 194 ~~v~~~~~ 201 (212)
T PRK06361 194 KELEEALE 201 (212)
T ss_pred HHHHHHHH
Confidence 88765554
No 47
>COG4130 Predicted sugar epimerase [Carbohydrate transport and metabolism]
Probab=64.87 E-value=46 Score=29.48 Aligned_cols=81 Identities=10% Similarity=0.118 Sum_probs=54.6
Q ss_pred CCHHHHHHHhccCCceEEe----ccccccccch---hhhHHHHHHHhCCceeecccCccccCCCCCcCCCCCCCcccccC
Q 018374 175 ASPDTIRRAHAVHPITAVQ----MEWSLLTRDI---EEEIIPLCRELGIGIVPYSPLGRGLLGGKAVVESLPANSFLISH 247 (357)
Q Consensus 175 ~~~~~l~~~~~~~~~~~~q----~~~n~~~~~~---~~~~~~~~~~~gi~v~a~spl~~G~L~g~~~~~~~~~~~~~~~~ 247 (357)
.++++++.+.+...+.++- .+||.++... ..++.++++..|-.-+..-|+..|--.+.
T Consensus 49 ~p~a~vka~Aek~Gl~IvSINAlypFn~wt~~~~a~a~~la~yA~acGA~aLvlcPlNd~s~~~~--------------- 113 (272)
T COG4130 49 TPAAEVKALAEKAGLTIVSINALYPFNEWTEERVAEARGLADYAAACGAKALVLCPLNDGSWPGT--------------- 113 (272)
T ss_pred CCHHHHHHHHHHcCcEEEEeeccccccccChHHHHHHHHHHHHHHhcCCceEEEEeccCCCCCCc---------------
Confidence 4677777777766655443 3777777542 26899999999999999999987522111
Q ss_pred CCCCCCcchhhHHHHHHHHHHHHhcCC
Q 018374 248 PRFTGENLGKNKQIYARVENLAKRNKC 274 (357)
Q Consensus 248 ~~~~~~~~~~~~~~~~~l~~ia~~~g~ 274 (357)
-.........+.+++.|-+++|+
T Consensus 114 ----~vr~~~lv~AlkaLkpil~~~gi 136 (272)
T COG4130 114 ----AVRREDLVEALKALKPILDEYGI 136 (272)
T ss_pred ----ccchHHHHHHHHHhhHHHHHhCc
Confidence 01113345677788888888876
No 48
>cd07943 DRE_TIM_HOA 4-hydroxy-2-oxovalerate aldolase, N-terminal catalytic TIM barrel domain. 4-hydroxy 2-ketovalerate aldolase (Also known as 4-hydroxy-2-ketovalerate aldolase and 4-hydroxy-2-oxopentanoate aldolase (HOA)) converts 4-hydroxy-2-oxopentanoate to acetaldehyde and pyruvate, the penultimate step in the meta-cleavage pathway for the degradation of phenols, cresols and catechol. This family includes the Escherichia coli MhpE aldolase, the Pseudomonas DmpG aldolase, and the Burkholderia xenovorans BphI pyruvate aldolase. In Pseudomonas, the DmpG aldolase tightly associates with a dehydrogenase (DmpF ) and is inactive without it. HOA has a canonical TIM-barrel fold with a C-terminal extension that forms a funnel leading to the active site. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate
Probab=64.06 E-value=1.1e+02 Score=27.66 Aligned_cols=25 Identities=12% Similarity=0.178 Sum_probs=22.6
Q ss_pred CCCHHHHHHHHHHHHHcCCCeEeCc
Q 018374 38 PVSEEDGISIIKHAFNKGITFFDTA 62 (357)
Q Consensus 38 ~~~~~~~~~~l~~A~~~Gin~~DtA 62 (357)
..+.++..++++...+.||..++.+
T Consensus 18 ~~~~~~k~~i~~~L~~~Gv~~iEvg 42 (263)
T cd07943 18 QFTLEQVRAIARALDAAGVPLIEVG 42 (263)
T ss_pred ecCHHHHHHHHHHHHHcCCCEEEee
Confidence 3478999999999999999999997
No 49
>PRK09613 thiH thiamine biosynthesis protein ThiH; Reviewed
Probab=63.00 E-value=54 Score=32.78 Aligned_cols=170 Identities=16% Similarity=0.180 Sum_probs=93.0
Q ss_pred CHHHHHHHHHHHHHc-CCCeEeCccCcCCCc--hHHHHHHHHhcC----CCCCeEEEeeeeeccCC------------Cc
Q 018374 40 SEEDGISIIKHAFNK-GITFFDTADVYGAHA--NEVLVGKVLKQL----PRKKIQLASKFGVVSMA------------PT 100 (357)
Q Consensus 40 ~~~~~~~~l~~A~~~-Gin~~DtA~~Yg~g~--sE~~lG~al~~~----~R~~~~I~tK~~~~~~~------------~~ 100 (357)
+.++..++++.+++. +++.=|....+.... .-..|.++.+.. -.+++++.+=+...... ..
T Consensus 29 ~~~~v~~il~Kal~~~~Ls~eEal~LL~~~~~~~le~L~~~A~~ir~~~~Gn~I~lfapLyiSN~C~n~C~YCgfs~~n~ 108 (469)
T PRK09613 29 DKDEIREILEKAKEKKGLSPEEAAVLLNVEDPELLEEIFEAAREIKEKIYGNRIVLFAPLYISNYCVNNCVYCGFRRSNK 108 (469)
T ss_pred CHHHHHHHHHHHHcCCCCCHHHHHHHHcCCChhHHHHHHHHHHHHHHHHcCCEEEEEEeccccCCCCCCCccCCCccCCC
Confidence 666788899998874 666666665554211 112233333332 22344444332211100 00
Q ss_pred -ccccCCCHHHHHHHHHHHHhHhCCCcccEEEeecCCCCCCccccccCCCChhHHHHHHHHHHH----cCccceEecCC-
Q 018374 101 -SVIVKGTPEYVRSCCEASLKRLGVDYIDLYYQHRVDPSVPIEDTVCDSLPTSLNIGELKMLVV----EGKIKYIGLSE- 174 (357)
Q Consensus 101 -~~~~~~~~~~i~~~v~~sL~~Lg~d~iDl~~lH~pd~~~~~~~~~~~~~~~~~~~~aL~~L~~----~G~ir~iGvS~- 174 (357)
...+.++.+.|.+.++. +..+|...+-|+.=..| +..+.+.. .++++.+++ .|.++.|+|+-
T Consensus 109 ~i~r~~Ls~EEI~~ea~~-~~~~G~~~i~LvsGe~p-~~~~~eyi----------~e~i~~I~~~~~~~g~i~~v~inig 176 (469)
T PRK09613 109 EIKRKKLTQEEIREEVKA-LEDMGHKRLALVAGEDP-PNCDIEYI----------LESIKTIYSTKHGNGEIRRVNVNIA 176 (469)
T ss_pred CCCceECCHHHHHHHHHH-HHHCCCCEEEEEeCCCC-CCCCHHHH----------HHHHHHHHHhccccCcceeeEEEee
Confidence 11245789999999985 57799777655421221 22233434 666666665 57777777753
Q ss_pred -CCHHHHHHHhccC--CceEEeccccc-----cc-----cch--hhhHHHHHHHhCCceeec
Q 018374 175 -ASPDTIRRAHAVH--PITAVQMEWSL-----LT-----RDI--EEEIIPLCRELGIGIVPY 221 (357)
Q Consensus 175 -~~~~~l~~~~~~~--~~~~~q~~~n~-----~~-----~~~--~~~~~~~~~~~gi~v~a~ 221 (357)
.+.+.++++.+.+ .+.+.|-.||. ++ +++ ..+.++.+++.||.-++.
T Consensus 177 ~lt~eey~~LkeaGv~~~~l~qETY~~ety~~~hp~g~k~~y~~Rl~t~~rA~~aGi~~Vg~ 238 (469)
T PRK09613 177 PTTVENYKKLKEAGIGTYQLFQETYHKPTYEKMHPSGPKSDYDWRLTAMDRAMEAGIDDVGI 238 (469)
T ss_pred cCCHHHHHHHHHcCCCEEEeccccCCHHHHHhcCCCCCCCCHHHHHHHHHHHHHcCCCeeCe
Confidence 5788888887653 23334444432 11 112 246788888999875554
No 50
>PF04476 DUF556: Protein of unknown function (DUF556); InterPro: IPR007565 The proteins in this entry are functionally uncharacterised.
Probab=62.34 E-value=93 Score=27.92 Aligned_cols=157 Identities=17% Similarity=0.186 Sum_probs=87.0
Q ss_pred CHHHHHHHHHHHHHcCCCeEeCcc-CcCC--CchHHHHHHHHhcCCCCCeEEEeeeeeccCCCcccccCCCHHHHHHHHH
Q 018374 40 SEEDGISIIKHAFNKGITFFDTAD-VYGA--HANEVLVGKVLKQLPRKKIQLASKFGVVSMAPTSVIVKGTPEYVRSCCE 116 (357)
Q Consensus 40 ~~~~~~~~l~~A~~~Gin~~DtA~-~Yg~--g~sE~~lG~al~~~~R~~~~I~tK~~~~~~~~~~~~~~~~~~~i~~~v~ 116 (357)
+.+|+. .|++.|...||.=+ .-|. .....++.+... ....+.-||..+|-. .+.+..+.....
T Consensus 9 ~~~EA~----~a~~~gaDiID~K~P~~GaLGA~~~~vi~~i~~-~~~~~~pvSAtiGDl---------p~~p~~~~~aa~ 74 (235)
T PF04476_consen 9 NVEEAE----EALAGGADIIDLKNPAEGALGALFPWVIREIVA-AVPGRKPVSATIGDL---------PMKPGTASLAAL 74 (235)
T ss_pred CHHHHH----HHHhCCCCEEEccCCCCCCCCCCCHHHHHHHHH-HcCCCCceEEEecCC---------CCCchHHHHHHH
Confidence 556654 46788999999642 2221 234455544333 333346688888754 234555555544
Q ss_pred HHHhHhCCCcccEEEeecCCCCCCccccccCCCChhHHHHHHHHHHHcCccceEecCCC------CHHHHHHHhccCCce
Q 018374 117 ASLKRLGVDYIDLYYQHRVDPSVPIEDTVCDSLPTSLNIGELKMLVVEGKIKYIGLSEA------SPDTIRRAHAVHPIT 190 (357)
Q Consensus 117 ~sL~~Lg~d~iDl~~lH~pd~~~~~~~~~~~~~~~~~~~~aL~~L~~~G~ir~iGvS~~------~~~~l~~~~~~~~~~ 190 (357)
..- .-|+||+-+-+.-..+.... .+. +....+++.+...+.++-+++.+.+ ++..+.++.....++
T Consensus 75 ~~a-~~GvdyvKvGl~g~~~~~~a-~e~------l~~v~~av~~~~~~~~vVAv~yAD~~r~~~~~p~~l~~~a~~aG~~ 146 (235)
T PF04476_consen 75 GAA-ATGVDYVKVGLFGCKDYDEA-IEA------LEAVVRAVKDFDPDKKVVAVGYADAQRVGSISPLDLPEIAAEAGFD 146 (235)
T ss_pred HHH-hcCCCEEEEecCCCCCHHHH-HHH------HHHHHHHHhhhCCCcEEEEEEecchhhhcCCCHHHHHHHHHHcCCC
Confidence 443 34889988877643322111 111 0111233333334456778888886 355666666667777
Q ss_pred EEeccc------cccccc---hhhhHHHHHHHhCCce
Q 018374 191 AVQMEW------SLLTRD---IEEEIIPLCRELGIGI 218 (357)
Q Consensus 191 ~~q~~~------n~~~~~---~~~~~~~~~~~~gi~v 218 (357)
.+++.- +++++- .-.++++.|+++|+.+
T Consensus 147 gvMlDTa~Kdg~~L~d~~~~~~L~~Fv~~ar~~gL~~ 183 (235)
T PF04476_consen 147 GVMLDTADKDGGSLFDHLSEEELAEFVAQARAHGLMC 183 (235)
T ss_pred EEEEecccCCCCchhhcCCHHHHHHHHHHHHHccchh
Confidence 777642 333321 1257888888888755
No 51
>cd03322 rpsA The starvation sensing protein RpsA from E.coli and its homologs are lactonizing enzymes whose putative targets are homoserine lactone (HSL)-derivative. They are part of the mandelate racemase (MR)-like subfamily of the enolase superfamily. Enzymes of this subfamily share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and catalytic residues, a partially conserved Lys-X-Lys motif and a conserved histidine-aspartate dyad.
Probab=62.07 E-value=57 Score=31.23 Aligned_cols=70 Identities=11% Similarity=-0.017 Sum_probs=55.1
Q ss_pred HHHHHHHHHcCccc-eEecCCCCHHHHHHHhccCCceEEecccccccc-chhhhHHHHHHHhCCceeecccC
Q 018374 155 IGELKMLVVEGKIK-YIGLSEASPDTIRRAHAVHPITAVQMEWSLLTR-DIEEEIIPLCRELGIGIVPYSPL 224 (357)
Q Consensus 155 ~~aL~~L~~~G~ir-~iGvS~~~~~~l~~~~~~~~~~~~q~~~n~~~~-~~~~~~~~~~~~~gi~v~a~spl 224 (357)
++.+.+|++...+. +.|=|-++...+..++....++++|+.....-- ....++.+.|+.+|+.++.++..
T Consensus 203 ~~~~~~L~~~~~~pia~gE~~~~~~~~~~~i~~~a~di~~~d~~~~GGit~~~~ia~~A~~~gi~~~~h~~~ 274 (361)
T cd03322 203 QEAFRLIRQHTATPLAVGEVFNSIWDWQNLIQERLIDYIRTTVSHAGGITPARKIADLASLYGVRTGWHGPT 274 (361)
T ss_pred HHHHHHHHhcCCCCEEeccCCcCHHHHHHHHHhCCCCEEecCccccCCHHHHHHHHHHHHHcCCeeeccCCC
Confidence 78888999987776 666777899999999998889999987665331 12368999999999999876443
No 52
>TIGR00126 deoC deoxyribose-phosphate aldolase. Deoxyribose-phosphate aldolase is involved in the catabolism of nucleotides and deoxyriibonucleotides. The catalytic process is as follows: 2-deoxy-D-ribose 5-phosphate = D-glyceraldehyde 3-phosphate + acetaldehyde. It is found in both gram-postive and gram-negative bacteria.
Probab=61.92 E-value=62 Score=28.56 Aligned_cols=72 Identities=19% Similarity=0.219 Sum_probs=50.5
Q ss_pred CHHHHHHHHHHHHHcCCCeEeCccCcC-CCchHH---HHHHHHhcCCCCCeEEEeeeeeccCCCcccccCCCHHHHHHHH
Q 018374 40 SEEDGISIIKHAFNKGITFFDTADVYG-AHANEV---LVGKVLKQLPRKKIQLASKFGVVSMAPTSVIVKGTPEYVRSCC 115 (357)
Q Consensus 40 ~~~~~~~~l~~A~~~Gin~~DtA~~Yg-~g~sE~---~lG~al~~~~R~~~~I~tK~~~~~~~~~~~~~~~~~~~i~~~v 115 (357)
+.++...+.+.+.++|..|+=|+.-|+ .|-+.. .+-+.++ ++ +..|.... -.+.+...+-+
T Consensus 130 ~~~ei~~a~~ia~eaGADfvKTsTGf~~~gat~~dv~~m~~~v~----~~--v~IKaaGG---------irt~~~a~~~i 194 (211)
T TIGR00126 130 TDEEIRKACEICIDAGADFVKTSTGFGAGGATVEDVRLMRNTVG----DT--IGVKASGG---------VRTAEDAIAMI 194 (211)
T ss_pred CHHHHHHHHHHHHHhCCCEEEeCCCCCCCCCCHHHHHHHHHHhc----cC--CeEEEeCC---------CCCHHHHHHHH
Confidence 567888999999999999999999886 343333 3333333 22 34444211 12788899999
Q ss_pred HHHHhHhCCCc
Q 018374 116 EASLKRLGVDY 126 (357)
Q Consensus 116 ~~sL~~Lg~d~ 126 (357)
+.--.|+|+++
T Consensus 195 ~aGa~riGts~ 205 (211)
T TIGR00126 195 EAGASRIGASA 205 (211)
T ss_pred HHhhHHhCcch
Confidence 99999999875
No 53
>PRK00164 moaA molybdenum cofactor biosynthesis protein A; Reviewed
Probab=61.73 E-value=1.4e+02 Score=27.96 Aligned_cols=158 Identities=15% Similarity=0.132 Sum_probs=82.7
Q ss_pred CCHHHHHHHHHHHHHcCCCeEeCccCcCCCch--HHHHHHHHhcC-C---CCCeEEEeeeeeccCCCcccccCCCHHHHH
Q 018374 39 VSEEDGISIIKHAFNKGITFFDTADVYGAHAN--EVLVGKVLKQL-P---RKKIQLASKFGVVSMAPTSVIVKGTPEYVR 112 (357)
Q Consensus 39 ~~~~~~~~~l~~A~~~Gin~~DtA~~Yg~g~s--E~~lG~al~~~-~---R~~~~I~tK~~~~~~~~~~~~~~~~~~~i~ 112 (357)
++.++..++++.+.+.|++.|.-. | |.. ..-+-+.++.. . -.++.|+|-... +.
T Consensus 49 ls~eei~~~i~~~~~~gi~~I~~t---G-GEPll~~~l~~li~~i~~~~~~~~i~itTNG~l----------------l~ 108 (331)
T PRK00164 49 LSLEEIERLVRAFVALGVRKVRLT---G-GEPLLRKDLEDIIAALAALPGIRDLALTTNGYL----------------LA 108 (331)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEEE---C-CCCcCccCHHHHHHHHHhcCCCceEEEEcCchh----------------HH
Confidence 578899999999999999888643 2 211 11122333322 1 234555555211 11
Q ss_pred HHHHHHHhHhCCCcccEEEeecCCCCCCccccccCCCChhHHHHHHHHHHHcCc----cceEecCCCCHHHHHHHhc---
Q 018374 113 SCCEASLKRLGVDYIDLYYQHRVDPSVPIEDTVCDSLPTSLNIGELKMLVVEGK----IKYIGLSEASPDTIRRAHA--- 185 (357)
Q Consensus 113 ~~v~~sL~~Lg~d~iDl~~lH~pd~~~~~~~~~~~~~~~~~~~~aL~~L~~~G~----ir~iGvS~~~~~~l~~~~~--- 185 (357)
+.+ ..|...|++.+- +.||..++.... .. .....+..++++++.+++.|. |..+.+.+.+.+++.++++
T Consensus 109 ~~~-~~L~~agl~~i~-ISlds~~~e~~~-~i-~~~~~~~~vl~~i~~~~~~g~~~v~i~~vv~~g~n~~ei~~l~~~~~ 184 (331)
T PRK00164 109 RRA-AALKDAGLDRVN-VSLDSLDPERFK-AI-TGRDRLDQVLAGIDAALAAGLTPVKVNAVLMKGVNDDEIPDLLEWAK 184 (331)
T ss_pred HHH-HHHHHcCCCEEE-EEeccCCHHHhc-cC-CCCCCHHHHHHHHHHHHHCCCCcEEEEEEEECCCCHHHHHHHHHHHH
Confidence 222 234444554442 344554432110 00 112346677999999999885 3344444455555555444
Q ss_pred cCCceEEeccccccccc---------hhhhHHHHHHHhCCceee
Q 018374 186 VHPITAVQMEWSLLTRD---------IEEEIIPLCRELGIGIVP 220 (357)
Q Consensus 186 ~~~~~~~q~~~n~~~~~---------~~~~~~~~~~~~gi~v~a 220 (357)
..++.+.-++|.++... ...++++.++++|+.+..
T Consensus 185 ~~gv~v~~ie~~p~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 228 (331)
T PRK00164 185 DRGIQLRFIELMPTGEGNEWFRKHHLSGAEIRARLAERGWTLQP 228 (331)
T ss_pred hCCCeEEEEEeeECCCCcchhhhcCCCHHHHHHHHHhccCcccc
Confidence 34555555555554331 114677888887655433
No 54
>COG0135 TrpF Phosphoribosylanthranilate isomerase [Amino acid transport and metabolism]
Probab=60.84 E-value=78 Score=27.91 Aligned_cols=81 Identities=19% Similarity=0.234 Sum_probs=55.6
Q ss_pred hHhCCCcccEEEeecCCCCCCccccccCCCChhHHHHHHHHHHHcCc-cceEecCC-CCHHHHHHHhccCCceEEecccc
Q 018374 120 KRLGVDYIDLYYQHRVDPSVPIEDTVCDSLPTSLNIGELKMLVVEGK-IKYIGLSE-ASPDTIRRAHAVHPITAVQMEWS 197 (357)
Q Consensus 120 ~~Lg~d~iDl~~lH~pd~~~~~~~~~~~~~~~~~~~~aL~~L~~~G~-ir~iGvS~-~~~~~l~~~~~~~~~~~~q~~~n 197 (357)
..+|.||+-+++.-.. +-.-. .+..+++.+.-. ++.+||.. .+.+.+.++++..+++.+|++-.
T Consensus 19 ~~~gad~iG~If~~~S----pR~Vs----------~~~a~~i~~~v~~~~~VgVf~n~~~~~i~~i~~~~~ld~VQlHG~ 84 (208)
T COG0135 19 AKAGADYIGFIFVPKS----PRYVS----------PEQAREIASAVPKVKVVGVFVNESIEEILEIAEELGLDAVQLHGD 84 (208)
T ss_pred HHcCCCEEEEEEcCCC----CCcCC----------HHHHHHHHHhCCCCCEEEEECCCCHHHHHHHHHhcCCCEEEECCC
Confidence 4588898877765421 11222 555666666665 88999975 68899999999999999998754
Q ss_pred ccccchhhhHHHHHHHhC-Ccee
Q 018374 198 LLTRDIEEEIIPLCRELG-IGIV 219 (357)
Q Consensus 198 ~~~~~~~~~~~~~~~~~g-i~v~ 219 (357)
. ..+.++..++.. +.++
T Consensus 85 e-----~~~~~~~l~~~~~~~v~ 102 (208)
T COG0135 85 E-----DPEYIDQLKEELGVPVI 102 (208)
T ss_pred C-----CHHHHHHHHhhcCCceE
Confidence 2 245666666654 5554
No 55
>PTZ00413 lipoate synthase; Provisional
Probab=60.59 E-value=1.3e+02 Score=29.23 Aligned_cols=169 Identities=15% Similarity=0.203 Sum_probs=88.8
Q ss_pred CCHHHHHHHHHHHHHcCCCeEeCccCcCC----CchHHHHHHHHhcCC--CCCeEEEeeeeeccCCCcccccCCCHHHHH
Q 018374 39 VSEEDGISIIKHAFNKGITFFDTADVYGA----HANEVLVGKVLKQLP--RKKIQLASKFGVVSMAPTSVIVKGTPEYVR 112 (357)
Q Consensus 39 ~~~~~~~~~l~~A~~~Gin~~DtA~~Yg~----g~sE~~lG~al~~~~--R~~~~I~tK~~~~~~~~~~~~~~~~~~~i~ 112 (357)
.|.++..++-+.+.+.|++|+=.+...++ |.+ ..+-+.++... ...+.|..=++-.. .+.+
T Consensus 177 lD~eEp~~vA~av~~~Gl~~~VVTSv~RDDL~D~ga-~~~a~~I~~Ir~~~p~~~IevligDf~---------g~~e--- 243 (398)
T PTZ00413 177 LDPNEPEKVAKAVAEMGVDYIVMTMVDRDDLPDGGA-SHVARCVELIKESNPELLLEALVGDFH---------GDLK--- 243 (398)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEEEEcCCCCChhhH-HHHHHHHHHHHccCCCCeEEEcCCccc---------cCHH---
Confidence 58899999999999999997744443332 223 33445555532 23455555544221 1232
Q ss_pred HHHHHHHhHhCCCcccEEEeecCCCCCCccccccC-CCChhHHHHHHHHHHHc--Cccc-----eEecCCCCHHHHHHHh
Q 018374 113 SCCEASLKRLGVDYIDLYYQHRVDPSVPIEDTVCD-SLPTSLNIGELKMLVVE--GKIK-----YIGLSEASPDTIRRAH 184 (357)
Q Consensus 113 ~~v~~sL~~Lg~d~iDl~~lH~pd~~~~~~~~~~~-~~~~~~~~~aL~~L~~~--G~ir-----~iGvS~~~~~~l~~~~ 184 (357)
+|++|.-.-+|.|- |+.+....+....++ .-.+.+.|+.|+..++. |.|. -+|+..-..+.++-+.
T Consensus 244 -----~l~~L~eAG~dvyn-HNLETv~rLyp~VRt~~atYe~sLe~Lr~AKe~f~~gi~tcSGiIVGLGET~eEvie~m~ 317 (398)
T PTZ00413 244 -----SVEKLANSPLSVYA-HNIECVERITPYVRDRRASYRQSLKVLEHVKEFTNGAMLTKSSIMLGLGETEEEVRQTLR 317 (398)
T ss_pred -----HHHHHHhcCCCEEe-cccccCHhHHHHHccCcCCHHHHHHHHHHHHHHhcCCceEeeeeEecCCCCHHHHHHHHH
Confidence 33344334455544 776443222211122 13566679999888874 3332 2465444333333332
Q ss_pred c--cCCceEEec-ccc-------ccc----cchhhhHHHHHHHhCCceeecccCcc
Q 018374 185 A--VHPITAVQM-EWS-------LLT----RDIEEEIIPLCRELGIGIVPYSPLGR 226 (357)
Q Consensus 185 ~--~~~~~~~q~-~~n-------~~~----~~~~~~~~~~~~~~gi~v~a~spl~~ 226 (357)
. ...++++.+ +|= ++. +.....+-+.+.+.|...++.+||-.
T Consensus 318 dLrelGVDivtIGQYL~Ps~~h~~V~~yv~P~~F~~~~~~a~~~Gf~~v~sgPlVR 373 (398)
T PTZ00413 318 DLRTAGVSAVTLGQYLQPTKTRLKVSRYAHPKEFEMWEEEAMKMGFLYCASGPLVR 373 (398)
T ss_pred HHHHcCCcEEeeccccCCCcccCCceeccCHHHHHHHHHHHHHcCCceEEecCccc
Confidence 2 234444433 210 011 11125677788888999999999864
No 56
>PRK15072 bifunctional D-altronate/D-mannonate dehydratase; Provisional
Probab=60.21 E-value=88 Score=30.52 Aligned_cols=70 Identities=7% Similarity=-0.036 Sum_probs=54.7
Q ss_pred HHHHHHHHHcCccc-eEecCCCCHHHHHHHhccCCceEEecccccccc-chhhhHHHHHHHhCCceeecccC
Q 018374 155 IGELKMLVVEGKIK-YIGLSEASPDTIRRAHAVHPITAVQMEWSLLTR-DIEEEIIPLCRELGIGIVPYSPL 224 (357)
Q Consensus 155 ~~aL~~L~~~G~ir-~iGvS~~~~~~l~~~~~~~~~~~~q~~~n~~~~-~~~~~~~~~~~~~gi~v~a~spl 224 (357)
++.+.+|++.-.+. +.|=|-++...++++++..-++++|+...-.-- ....++.++|+.+|+.++.++..
T Consensus 246 ~~~~~~L~~~~~iPIa~dEs~~~~~~~~~li~~~a~dii~~d~~~~GGit~~~kia~lA~~~gi~~~~h~~~ 317 (404)
T PRK15072 246 QEAFRLIRQHTTTPLAVGEVFNSIWDCKQLIEEQLIDYIRTTVTHAGGITHLRRIADFAALYQVRTGSHGPT 317 (404)
T ss_pred HHHHHHHHhcCCCCEEeCcCccCHHHHHHHHHcCCCCEEecCccccCcHHHHHHHHHHHHHcCCceeeccCc
Confidence 78888898887666 556677899999999998889999986665421 12368899999999999986543
No 57
>cd07943 DRE_TIM_HOA 4-hydroxy-2-oxovalerate aldolase, N-terminal catalytic TIM barrel domain. 4-hydroxy 2-ketovalerate aldolase (Also known as 4-hydroxy-2-ketovalerate aldolase and 4-hydroxy-2-oxopentanoate aldolase (HOA)) converts 4-hydroxy-2-oxopentanoate to acetaldehyde and pyruvate, the penultimate step in the meta-cleavage pathway for the degradation of phenols, cresols and catechol. This family includes the Escherichia coli MhpE aldolase, the Pseudomonas DmpG aldolase, and the Burkholderia xenovorans BphI pyruvate aldolase. In Pseudomonas, the DmpG aldolase tightly associates with a dehydrogenase (DmpF ) and is inactive without it. HOA has a canonical TIM-barrel fold with a C-terminal extension that forms a funnel leading to the active site. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate
Probab=60.13 E-value=1e+02 Score=27.94 Aligned_cols=110 Identities=20% Similarity=0.196 Sum_probs=61.5
Q ss_pred CCCHHHHHHHHHHHHhHhCCCcccEEEeecCCCCCCccccccCCCChhHHHHHHHHHHHc-CccceEecC---CCCHHHH
Q 018374 105 KGTPEYVRSCCEASLKRLGVDYIDLYYQHRVDPSVPIEDTVCDSLPTSLNIGELKMLVVE-GKIKYIGLS---EASPDTI 180 (357)
Q Consensus 105 ~~~~~~i~~~v~~sL~~Lg~d~iDl~~lH~pd~~~~~~~~~~~~~~~~~~~~aL~~L~~~-G~ir~iGvS---~~~~~~l 180 (357)
.++.+...+-+ +.|.++|+++|.+-+......... . +.+ .....++.++.+++. +..+...+. ......+
T Consensus 18 ~~~~~~k~~i~-~~L~~~Gv~~iEvg~~~~~~~~~~--~--~~~-~~~~~~e~i~~~~~~~~~~~~~~~~~~~~~~~~~i 91 (263)
T cd07943 18 QFTLEQVRAIA-RALDAAGVPLIEVGHGDGLGGSSL--N--YGF-AAHTDEEYLEAAAEALKQAKLGVLLLPGIGTVDDL 91 (263)
T ss_pred ecCHHHHHHHH-HHHHHcCCCEEEeecCCCCCCccc--c--cCC-CCCChHHHHHHHHHhccCCEEEEEecCCccCHHHH
Confidence 45566555544 459999999999986532211000 0 000 011127777777553 346665554 2346667
Q ss_pred HHHhccCCceEEeccccccccchhhhHHHHHHHhCCceeec
Q 018374 181 RRAHAVHPITAVQMEWSLLTRDIEEEIIPLCRELGIGIVPY 221 (357)
Q Consensus 181 ~~~~~~~~~~~~q~~~n~~~~~~~~~~~~~~~~~gi~v~a~ 221 (357)
+.+.+. .++.+.+-++.-+...-.+.+++++++|+.+...
T Consensus 92 ~~a~~~-g~~~iri~~~~s~~~~~~~~i~~ak~~G~~v~~~ 131 (263)
T cd07943 92 KMAADL-GVDVVRVATHCTEADVSEQHIGAARKLGMDVVGF 131 (263)
T ss_pred HHHHHc-CCCEEEEEechhhHHHHHHHHHHHHHCCCeEEEE
Confidence 666654 4566655443333222367889999999876553
No 58
>PRK01222 N-(5'-phosphoribosyl)anthranilate isomerase; Provisional
Probab=59.70 E-value=37 Score=29.89 Aligned_cols=65 Identities=18% Similarity=0.235 Sum_probs=43.4
Q ss_pred HhHhCCCcccEEEeecCCCCCCccccccCCCChhHHHHHHHHHHH--cCccceEecC-CCCHHHHHHHhccCCceEEecc
Q 018374 119 LKRLGVDYIDLYYQHRVDPSVPIEDTVCDSLPTSLNIGELKMLVV--EGKIKYIGLS-EASPDTIRRAHAVHPITAVQME 195 (357)
Q Consensus 119 L~~Lg~d~iDl~~lH~pd~~~~~~~~~~~~~~~~~~~~aL~~L~~--~G~ir~iGvS-~~~~~~l~~~~~~~~~~~~q~~ 195 (357)
+..+|+|++-+++ ++.....+. .+...++.+ .+.+..+||. +.+++.+.++++...++++|++
T Consensus 19 ~~~~Gad~iGfI~--~~~S~R~V~------------~~~a~~i~~~~~~~i~~VgVf~~~~~~~i~~~~~~~~~d~vQLH 84 (210)
T PRK01222 19 AAELGADAIGFVF--YPKSPRYVS------------PEQAAELAAALPPFVKVVGVFVNASDEEIDEIVETVPLDLLQLH 84 (210)
T ss_pred HHHcCCCEEEEcc--CCCCCCcCC------------HHHHHHHHHhCCCCCCEEEEEeCCCHHHHHHHHHhcCCCEEEEC
Confidence 3458999988864 332222221 222333333 3568899997 5689999999999999999996
Q ss_pred cc
Q 018374 196 WS 197 (357)
Q Consensus 196 ~n 197 (357)
-+
T Consensus 85 g~ 86 (210)
T PRK01222 85 GD 86 (210)
T ss_pred CC
Confidence 53
No 59
>cd00739 DHPS DHPS subgroup of Pterin binding enzymes. DHPS (dihydropteroate synthase), a functional homodimer, catalyzes the condensation of p-aminobenzoic acid (pABA) in the de novo biosynthesis of folate, which is an essential cofactor in both nucleic acid and protein biosynthesis. Prokaryotes (and some lower eukaryotes) must synthesize folate de novo, while higher eukaryotes are able to utilize dietary folate and therefore lack DHPS. Sulfonamide drugs, which are substrate analogs of pABA, target DHPS.
Probab=59.47 E-value=1.4e+02 Score=27.17 Aligned_cols=106 Identities=17% Similarity=0.096 Sum_probs=64.0
Q ss_pred CCHHHHHHHHHHHHhHhCCCcccEEEe-ecCCCCCCccccccCCCChhHHHHHHHHHHHcCccceEecCCCCHHHHHHHh
Q 018374 106 GTPEYVRSCCEASLKRLGVDYIDLYYQ-HRVDPSVPIEDTVCDSLPTSLNIGELKMLVVEGKIKYIGLSEASPDTIRRAH 184 (357)
Q Consensus 106 ~~~~~i~~~v~~sL~~Lg~d~iDl~~l-H~pd~~~~~~~~~~~~~~~~~~~~aL~~L~~~G~ir~iGvS~~~~~~l~~~~ 184 (357)
++.+.+.+..++.+ .=|.|.||+-.. -+|+...-.++. .+......++.+++.-.+- +.+-+++++.+++++
T Consensus 21 ~~~~~~~~~a~~~~-~~GAdiIDIG~~st~p~~~~i~~~~-----E~~rl~~~v~~i~~~~~~p-lSIDT~~~~v~e~al 93 (257)
T cd00739 21 LSLDKAVAHAEKMI-AEGADIIDIGGESTRPGADPVSVEE-----ELERVIPVLEALRGELDVL-ISVDTFRAEVARAAL 93 (257)
T ss_pred CCHHHHHHHHHHHH-HCCCCEEEECCCcCCCCCCCCCHHH-----HHHHHHHHHHHHHhcCCCc-EEEeCCCHHHHHHHH
Confidence 45566666655554 558899998642 344432111111 0122244566666653443 888899999999999
Q ss_pred ccCCceEEeccccccccchhhhHHHHHHHhCCceeecc
Q 018374 185 AVHPITAVQMEWSLLTRDIEEEIIPLCRELGIGIVPYS 222 (357)
Q Consensus 185 ~~~~~~~~q~~~n~~~~~~~~~~~~~~~~~gi~v~a~s 222 (357)
+.+. ++ -...+....+ .++++.++++|..++.+.
T Consensus 94 ~~G~-~i-INdisg~~~~--~~~~~l~~~~~~~vV~m~ 127 (257)
T cd00739 94 EAGA-DI-INDVSGGSDD--PAMLEVAAEYGAPLVLMH 127 (257)
T ss_pred HhCC-CE-EEeCCCCCCC--hHHHHHHHHcCCCEEEEC
Confidence 8753 32 2333444322 578999999999999953
No 60
>TIGR02370 pyl_corrinoid methyltransferase cognate corrinoid proteins, Methanosarcina family. This model describes a subfamily of the B12 binding domain (pfam02607, pfam02310) proteins. Members of the seed alignment include corrinoid proteins specific to four different, mutally non-homologous enzymes of the genus Methanosarcina. Three of the four cognate enzymes (trimethylamine, dimethylamine, and monomethylamine methyltransferases) all have the unusual, ribosomally incorporated amino acid pyrrolysine at the active site. All act in systems in which a methyl group is transferred to the corrinoid protein to create methylcobalamin, from which the methyl group is later transferred elsewhere.
Probab=59.05 E-value=87 Score=27.16 Aligned_cols=145 Identities=12% Similarity=0.037 Sum_probs=81.3
Q ss_pred CHHHHHHHHHHHHHcCCCeEeCccCcCCCchHHHHHHHHhcC----CCCCeEEEeeeeeccCCCcccccCCCHHHHHHHH
Q 018374 40 SEEDGISIIKHAFNKGITFFDTADVYGAHANEVLVGKVLKQL----PRKKIQLASKFGVVSMAPTSVIVKGTPEYVRSCC 115 (357)
Q Consensus 40 ~~~~~~~~l~~A~~~Gin~~DtA~~Yg~g~sE~~lG~al~~~----~R~~~~I~tK~~~~~~~~~~~~~~~~~~~i~~~v 115 (357)
|.+++.++++.+++.|++..|. | +..+..+++.. .+.+++++-= .+..+.+++.+
T Consensus 10 d~~~~~~~v~~~l~~g~~~~~i---~-----~~~l~p~m~~iG~~w~~gei~va~~-------------~~a~~~~~~~l 68 (197)
T TIGR02370 10 EEDDVVEGAQKALDAGIDPIEL---I-----EKGLMAGMGVVGKLFEDGELFLPHV-------------MMSADAMLAGI 68 (197)
T ss_pred CHHHHHHHHHHHHHcCCCHHHH---H-----HHHHHHHHHHHHHHHcCCCccHHHH-------------HHHHHHHHHHH
Confidence 7899999999999999977763 2 34445555432 2333333111 12344555555
Q ss_pred HHHHhHhCCC----cccEEEeecCCCCCCccccccCCCChhHHHHHHHHHHHcCc-cceEecCCCCHHHHHHHhccCCce
Q 018374 116 EASLKRLGVD----YIDLYYQHRVDPSVPIEDTVCDSLPTSLNIGELKMLVVEGK-IKYIGLSEASPDTIRRAHAVHPIT 190 (357)
Q Consensus 116 ~~sL~~Lg~d----~iDl~~lH~pd~~~~~~~~~~~~~~~~~~~~aL~~L~~~G~-ir~iGvS~~~~~~l~~~~~~~~~~ 190 (357)
+.....+... .---+++-.+..+.+ -.+..-.-.-|+..|. |.++|. +-+.+.+.+.+....++
T Consensus 69 ~~l~~~~~~~~~~~~~~~vv~~t~~gd~H----------~lG~~~v~~~l~~~G~~vi~LG~-~vp~e~~v~~~~~~~pd 137 (197)
T TIGR02370 69 KVLTPEMEKAVETEVLGKVVCGVAEGDVH----------DIGKNIVVTMLRANGFDVIDLGR-DVPIDTVVEKVKKEKPL 137 (197)
T ss_pred HHHHHHhhccccCCCCCeEEEEeCCCchh----------HHHHHHHHHHHHhCCcEEEECCC-CCCHHHHHHHHHHcCCC
Confidence 5555545421 111222222211111 1122333344566663 556775 44777777777777888
Q ss_pred EEeccccccccch-hhhHHHHHHHhCC
Q 018374 191 AVQMEWSLLTRDI-EEEIIPLCRELGI 216 (357)
Q Consensus 191 ~~q~~~n~~~~~~-~~~~~~~~~~~gi 216 (357)
++.+.+....... -.++++.+++.|.
T Consensus 138 ~v~lS~~~~~~~~~~~~~i~~l~~~~~ 164 (197)
T TIGR02370 138 MLTGSALMTTTMYGQKDINDKLKEEGY 164 (197)
T ss_pred EEEEccccccCHHHHHHHHHHHHHcCC
Confidence 8888877665532 2678888888854
No 61
>TIGR02534 mucon_cyclo muconate and chloromuconate cycloisomerases. This model encompasses muconate cycloisomerase (EC 5.5.1.1) and chloromuconate cycloisomerase (EC 5.5.1.7), enzymes that often overlap in specificity. It excludes more distantly related proteins such as mandelate racemase (5.1.2.2).
Probab=58.88 E-value=51 Score=31.63 Aligned_cols=73 Identities=12% Similarity=0.038 Sum_probs=54.5
Q ss_pred HHHHHHHHHHcCccc-eEecCCCCHHHHHHHhccCCceEEecccccccc-chhhhHHHHHHHhCCceeecccCcc
Q 018374 154 NIGELKMLVVEGKIK-YIGLSEASPDTIRRAHAVHPITAVQMEWSLLTR-DIEEEIIPLCRELGIGIVPYSPLGR 226 (357)
Q Consensus 154 ~~~aL~~L~~~G~ir-~iGvS~~~~~~l~~~~~~~~~~~~q~~~n~~~~-~~~~~~~~~~~~~gi~v~a~spl~~ 226 (357)
-++.+.+|++...+. +.|=|-++...+.+++....++++|+..+-.-- .....+...|+.+|+.++..+.+.+
T Consensus 226 d~~~~~~l~~~~~~pia~dE~~~~~~~~~~~~~~~~~d~~~~d~~~~GGi~~~~~i~~lA~~~gi~~~~~~~~~s 300 (368)
T TIGR02534 226 NREALARLTRRFNVPIMADESVTGPADALAIAKASAADVFALKTTKSGGLLESKKIAAIAEAAGIALYGGTMLEG 300 (368)
T ss_pred cHHHHHHHHHhCCCCEEeCcccCCHHHHHHHHHhCCCCEEEEcccccCCHHHHHHHHHHHHHcCCceeeecchhh
Confidence 377888888877665 667677889999999888888999987665321 1236789999999999877644443
No 62
>PRK10415 tRNA-dihydrouridine synthase B; Provisional
Probab=58.87 E-value=1.6e+02 Score=27.70 Aligned_cols=138 Identities=11% Similarity=0.057 Sum_probs=82.6
Q ss_pred CHHHHHHHHHHHHHcCCCeEeCccC----------cCC--CchHHHHHHHHhcC-CCCCeEEEeeeeeccCCCcccccCC
Q 018374 40 SEEDGISIIKHAFNKGITFFDTADV----------YGA--HANEVLVGKVLKQL-PRKKIQLASKFGVVSMAPTSVIVKG 106 (357)
Q Consensus 40 ~~~~~~~~l~~A~~~Gin~~DtA~~----------Yg~--g~sE~~lG~al~~~-~R~~~~I~tK~~~~~~~~~~~~~~~ 106 (357)
+.++..++.+.+.+.|+..||.--. +|. ...-+.+.+.++.. .--++-|+.|+..... .
T Consensus 75 ~~~~~~~aa~~~~~~g~d~IdlN~gCP~~~v~~~g~Gs~ll~~p~~~~eiv~av~~a~d~pv~vKiR~G~~--------~ 146 (321)
T PRK10415 75 DPKEMADAARINVESGAQIIDINMGCPAKKVNRKLAGSALLQYPDLVKSILTEVVNAVDVPVTLKIRTGWA--------P 146 (321)
T ss_pred CHHHHHHHHHHHHHCCCCEEEEeCCCCHHHHcCCCcccHHhcCHHHHHHHHHHHHHhcCCceEEEEEcccc--------C
Confidence 6788888888888899999994322 221 11234444444432 1114457777753211 1
Q ss_pred CHHHHHHHHHHHHhHhCCCcccEEEeecCCCCCCcc--ccccCCCChhHHHHHHHHHHHcCccceEecCCC-CHHHHHHH
Q 018374 107 TPEYVRSCCEASLKRLGVDYIDLYYQHRVDPSVPIE--DTVCDSLPTSLNIGELKMLVVEGKIKYIGLSEA-SPDTIRRA 183 (357)
Q Consensus 107 ~~~~i~~~v~~sL~~Lg~d~iDl~~lH~pd~~~~~~--~~~~~~~~~~~~~~aL~~L~~~G~ir~iGvS~~-~~~~l~~~ 183 (357)
+..... .+-+.++..| +|.+.+|.-....... .. |+.+.++++.=.|--||..+. +++..+++
T Consensus 147 ~~~~~~-~~a~~le~~G---~d~i~vh~rt~~~~~~G~a~----------~~~i~~ik~~~~iPVI~nGgI~s~~da~~~ 212 (321)
T PRK10415 147 EHRNCV-EIAQLAEDCG---IQALTIHGRTRACLFNGEAE----------YDSIRAVKQKVSIPVIANGDITDPLKARAV 212 (321)
T ss_pred CcchHH-HHHHHHHHhC---CCEEEEecCccccccCCCcC----------hHHHHHHHHhcCCcEEEeCCCCCHHHHHHH
Confidence 111122 2223366777 5677888754321111 12 788888888777888888774 88899999
Q ss_pred hccCCceEEecccccc
Q 018374 184 HAVHPITAVQMEWSLL 199 (357)
Q Consensus 184 ~~~~~~~~~q~~~n~~ 199 (357)
++....+.+|+-=-++
T Consensus 213 l~~~gadgVmiGR~~l 228 (321)
T PRK10415 213 LDYTGADALMIGRAAQ 228 (321)
T ss_pred HhccCCCEEEEChHhh
Confidence 9877788888753333
No 63
>PRK07379 coproporphyrinogen III oxidase; Provisional
Probab=57.71 E-value=38 Score=33.02 Aligned_cols=69 Identities=16% Similarity=0.061 Sum_probs=38.7
Q ss_pred CCHHHHHHHHHHHHhHhCCCcccEEEeecCCCCCCccccc----cCCCC---hhH-HHHHHHHHHHcCccceEecCCCCH
Q 018374 106 GTPEYVRSCCEASLKRLGVDYIDLYYQHRVDPSVPIEDTV----CDSLP---TSL-NIGELKMLVVEGKIKYIGLSEASP 177 (357)
Q Consensus 106 ~~~~~i~~~v~~sL~~Lg~d~iDl~~lH~pd~~~~~~~~~----~~~~~---~~~-~~~aL~~L~~~G~ir~iGvS~~~~ 177 (357)
-+.+.+.+.++..+ .|+.++|.+|.+.-- +.++..... ...+. ... --.+.+.|.+.|.. .+++|||..
T Consensus 179 qt~e~~~~tl~~~~-~l~p~~is~y~L~~~-pgT~l~~~~~~g~~~~~~~~~~~~~~~~~~~~L~~~Gy~-~yeisnfa~ 255 (400)
T PRK07379 179 QTLEDWQASLEAAI-ALNPTHLSCYDLVLE-PGTAFGKQYQPGKAPLPSDETTAAMYRLAQEILTQAGYE-HYEISNYAK 255 (400)
T ss_pred CCHHHHHHHHHHHH-cCCCCEEEEecceec-CCchhHHHhhcCCCCCCCHHHHHHHHHHHHHHHHHcCCc-eeeeeheEC
Confidence 36777888777665 488899988876532 111111000 00000 111 12356678888875 589999854
No 64
>cd00740 MeTr MeTr subgroup of pterin binding enzymes. This family includes cobalamin-dependent methyltransferases such as methyltetrahydrofolate, corrinoid iron-sulfur protein methyltransferase (MeTr) and methionine synthase (MetH). Cobalamin-dependent methyltransferases catalyze the transfer of a methyl group via a methyl- cob(III)amide intermediate. These include MeTr, a functional heterodimer, and the folate binding domain of MetH.
Probab=57.48 E-value=1.5e+02 Score=26.89 Aligned_cols=104 Identities=13% Similarity=0.065 Sum_probs=61.0
Q ss_pred CCCHHHHHHHHHHHHhHhCCCcccEEEeecCCCCCCccccccCCCChhHHHHHHHHHHHcCccceEecCCCCHHHHHHHh
Q 018374 105 KGTPEYVRSCCEASLKRLGVDYIDLYYQHRVDPSVPIEDTVCDSLPTSLNIGELKMLVVEGKIKYIGLSEASPDTIRRAH 184 (357)
Q Consensus 105 ~~~~~~i~~~v~~sL~~Lg~d~iDl~~lH~pd~~~~~~~~~~~~~~~~~~~~aL~~L~~~G~ir~iGvS~~~~~~l~~~~ 184 (357)
..+++.+.+..++.++ -|.|+||+-. .|......++. -+.+..+++.-.+ -|.+-+++++.+++++
T Consensus 22 ~~~~d~~~~~A~~~~~-~GAdiIDIG~--~~~~~~~~ee~----------~r~v~~i~~~~~~-piSIDT~~~~v~e~aL 87 (252)
T cd00740 22 AEDYDEALDVARQQVE-GGAQILDLNV--DYGGLDGVSAM----------KWLLNLLATEPTV-PLMLDSTNWEVIEAGL 87 (252)
T ss_pred cCCHHHHHHHHHHHHH-CCCCEEEECC--CCCCCCHHHHH----------HHHHHHHHHhcCC-cEEeeCCcHHHHHHHH
Confidence 3467778888777775 4999999865 23211111111 2222222222122 3788889999999999
Q ss_pred ccC-CceEEecccccccc-chhhhHHHHHHHhCCceeeccc
Q 018374 185 AVH-PITAVQMEWSLLTR-DIEEEIIPLCRELGIGIVPYSP 223 (357)
Q Consensus 185 ~~~-~~~~~q~~~n~~~~-~~~~~~~~~~~~~gi~v~a~sp 223 (357)
+.. ..+ .-...+.... ....++++.++++|..++.+..
T Consensus 88 ~~~~G~~-iINsIs~~~~~e~~~~~~~~~~~~~~~vV~m~~ 127 (252)
T cd00740 88 KCCQGKC-VVNSINLEDGEERFLKVARLAKEHGAAVVVLAF 127 (252)
T ss_pred hhCCCCc-EEEeCCCCCCccccHHHHHHHHHhCCCEEEecc
Confidence 862 222 3334444331 1124688999999999988743
No 65
>PRK05660 HemN family oxidoreductase; Provisional
Probab=57.10 E-value=1.3e+02 Score=28.99 Aligned_cols=69 Identities=9% Similarity=-0.057 Sum_probs=38.7
Q ss_pred CCCHHHHHHHHHHHHhHhCCCcccEEEee-cCCCCCCccccccCCCChhHHH----HHHHHHHHcCccceEecCCCCH
Q 018374 105 KGTPEYVRSCCEASLKRLGVDYIDLYYQH-RVDPSVPIEDTVCDSLPTSLNI----GELKMLVVEGKIKYIGLSEASP 177 (357)
Q Consensus 105 ~~~~~~i~~~v~~sL~~Lg~d~iDl~~lH-~pd~~~~~~~~~~~~~~~~~~~----~aL~~L~~~G~ir~iGvS~~~~ 177 (357)
..+.+.+.+.++..++ |+.++|.+|.+- .|+.. ..........-...+ .+.+.|.+.|.. .+++|||..
T Consensus 170 gqt~~~~~~~l~~~~~-l~p~~is~y~l~~~~gT~--l~~~~~~~~~~~~~~~~~~~~~~~L~~~Gy~-~yei~~fa~ 243 (378)
T PRK05660 170 DQSLEEALDDLRQAIA-LNPPHLSWYQLTIEPNTL--FGSRPPVLPDDDALWDIFEQGHQLLTAAGYQ-QYETSAYAK 243 (378)
T ss_pred CCCHHHHHHHHHHHHh-cCCCeEEeeccEeccCCc--ccccCCCCcCHHHHHHHHHHHHHHHHHcCCc-EeecccccC
Confidence 3477888888887665 999999998764 33221 100000000111112 234556777864 478988854
No 66
>PRK09856 fructoselysine 3-epimerase; Provisional
Probab=57.03 E-value=67 Score=29.06 Aligned_cols=52 Identities=13% Similarity=0.127 Sum_probs=34.5
Q ss_pred hhHHHHHHHhCCceeecccCccccCCCCCcCCCCCCCcccccCCCCCCCcchhhHHHHHHHHHHHHhcCCC
Q 018374 205 EEIIPLCRELGIGIVPYSPLGRGLLGGKAVVESLPANSFLISHPRFTGENLGKNKQIYARVENLAKRNKCT 275 (357)
Q Consensus 205 ~~~~~~~~~~gi~v~a~spl~~G~L~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ia~~~g~s 275 (357)
...+++|+..|...+...|...|... ...+.+....+.++.+.++|+++|+.
T Consensus 93 ~~~i~~a~~lGa~~i~~~~~~~~~~~-------------------~~~~~~~~~~~~l~~l~~~a~~~gv~ 144 (275)
T PRK09856 93 KLAMDMAKEMNAGYTLISAAHAGYLT-------------------PPNVIWGRLAENLSELCEYAENIGMD 144 (275)
T ss_pred HHHHHHHHHhCCCEEEEcCCCCCCCC-------------------CHHHHHHHHHHHHHHHHHHHHHcCCE
Confidence 46789999999999877665332100 01123355667778888888888863
No 67
>PRK08446 coproporphyrinogen III oxidase; Provisional
Probab=56.78 E-value=1.1e+02 Score=29.28 Aligned_cols=68 Identities=10% Similarity=0.029 Sum_probs=38.4
Q ss_pred CCHHHHHHHHHHHHhHhCCCcccEEEeec-CCCCCCccccccCC-CChhHHHHHHHHHHHcCccceEecCCCCH
Q 018374 106 GTPEYVRSCCEASLKRLGVDYIDLYYQHR-VDPSVPIEDTVCDS-LPTSLNIGELKMLVVEGKIKYIGLSEASP 177 (357)
Q Consensus 106 ~~~~~i~~~v~~sL~~Lg~d~iDl~~lH~-pd~~~~~~~~~~~~-~~~~~~~~aL~~L~~~G~ir~iGvS~~~~ 177 (357)
.+.+.+.+.++..+ .|+.+++.+|.+.- |+. +.....-.. ....-...+.+.|.+.|.. .+++|||..
T Consensus 162 qt~~~~~~~l~~~~-~l~~~~is~y~L~~~~gT--~l~~~~~~~~~~~~~~~~~~~~l~~~Gy~-~yeis~fa~ 231 (350)
T PRK08446 162 DNKKLLKEELKLAK-ELPINHLSAYSLTIEENT--PFFEKNHKKKDDENLAKFFIEQLEELGFK-QYEISNFGK 231 (350)
T ss_pred CCHHHHHHHHHHHH-hcCCCEEEeccceecCCC--hhHHhhhcCCCHHHHHHHHHHHHHHCCCc-EEEeehhhC
Confidence 36778888887654 58999999887643 221 110000000 0001123456667777864 689998764
No 68
>PRK06294 coproporphyrinogen III oxidase; Provisional
Probab=56.09 E-value=48 Score=31.90 Aligned_cols=69 Identities=12% Similarity=0.115 Sum_probs=40.3
Q ss_pred CCCHHHHHHHHHHHHhHhCCCcccEEEeec-CCCCCCcccc---ccCCCChh----H-HHHHHHHHHHcCccceEecCCC
Q 018374 105 KGTPEYVRSCCEASLKRLGVDYIDLYYQHR-VDPSVPIEDT---VCDSLPTS----L-NIGELKMLVVEGKIKYIGLSEA 175 (357)
Q Consensus 105 ~~~~~~i~~~v~~sL~~Lg~d~iDl~~lH~-pd~~~~~~~~---~~~~~~~~----~-~~~aL~~L~~~G~ir~iGvS~~ 175 (357)
.-+.+.+.+.++..++ |+.++|.+|.+.- |.. +.... ....++-. + -..+.+.|.+.|..+ +++|||
T Consensus 166 gqt~~~~~~~l~~~~~-l~~~~is~y~l~~~~gT--~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~Gy~~-yeis~f 241 (370)
T PRK06294 166 TQSLSDFIVDLHQAIT-LPITHISLYNLTIDPHT--SFYKHRKRLLPSIADEEILAEMSLAAEELLTSQGFTR-YELASY 241 (370)
T ss_pred CCCHHHHHHHHHHHHc-cCCCeEEEeeeEecCCC--hHHHHHhcCCCCCcCHHHHHHHHHHHHHHHHHcCCCe-eeeeee
Confidence 3478888888888764 8999999998753 321 11000 00000111 1 123556677788754 889988
Q ss_pred CH
Q 018374 176 SP 177 (357)
Q Consensus 176 ~~ 177 (357)
..
T Consensus 242 a~ 243 (370)
T PRK06294 242 AK 243 (370)
T ss_pred eC
Confidence 54
No 69
>PRK02083 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=55.30 E-value=1.6e+02 Score=26.50 Aligned_cols=87 Identities=11% Similarity=0.028 Sum_probs=52.2
Q ss_pred hHhCCCcccEEEeecCCCCCCccccccCCCChhHHHHHHHHHHHcCccceEecCC-CCHHHHHHHhccCCceEEeccccc
Q 018374 120 KRLGVDYIDLYYQHRVDPSVPIEDTVCDSLPTSLNIGELKMLVVEGKIKYIGLSE-ASPDTIRRAHAVHPITAVQMEWSL 198 (357)
Q Consensus 120 ~~Lg~d~iDl~~lH~pd~~~~~~~~~~~~~~~~~~~~aL~~L~~~G~ir~iGvS~-~~~~~l~~~~~~~~~~~~q~~~n~ 198 (357)
+.+| +|-+.+|..+......... |+.+.++++.-.+.-|.-.. .+.+.+.++++....+.+.+---+
T Consensus 163 ~~~g---~~~ii~~~i~~~g~~~g~d---------~~~i~~~~~~~~ipvia~GGv~s~~d~~~~~~~~G~~gvivg~al 230 (253)
T PRK02083 163 EELG---AGEILLTSMDRDGTKNGYD---------LELTRAVSDAVNVPVIASGGAGNLEHFVEAFTEGGADAALAASIF 230 (253)
T ss_pred HHcC---CCEEEEcCCcCCCCCCCcC---------HHHHHHHHhhCCCCEEEECCCCCHHHHHHHHHhCCccEEeEhHHH
Confidence 4555 5667787765432222221 77788888766666666555 467888888776555555442222
Q ss_pred cccc-hhhhHHHHHHHhCCce
Q 018374 199 LTRD-IEEEIIPLCRELGIGI 218 (357)
Q Consensus 199 ~~~~-~~~~~~~~~~~~gi~v 218 (357)
.... ...++.+.|++.||.+
T Consensus 231 ~~~~~~~~~~~~~~~~~~~~~ 251 (253)
T PRK02083 231 HFGEITIGELKAYLAEQGIPV 251 (253)
T ss_pred HcCCCCHHHHHHHHHHCCCcc
Confidence 2111 1257889999888865
No 70
>PF13378 MR_MLE_C: Enolase C-terminal domain-like; PDB: 3FCP_B 3P0W_D 3VFC_A 3VDG_A 3FJ4_B 3CT2_B 3DGB_A 3V3W_A 3V4B_A 3NO1_E ....
Probab=55.26 E-value=20 Score=27.64 Aligned_cols=51 Identities=24% Similarity=0.185 Sum_probs=39.2
Q ss_pred CCCCHHHHHHHhccCCceEEecccccccc-chhhhHHHHHHHhCCceeeccc
Q 018374 173 SEASPDTIRRAHAVHPITAVQMEWSLLTR-DIEEEIIPLCRELGIGIVPYSP 223 (357)
Q Consensus 173 S~~~~~~l~~~~~~~~~~~~q~~~n~~~~-~~~~~~~~~~~~~gi~v~a~sp 223 (357)
+.++.+.++++++...++++|+...-.-- .....+.++|+++|+.++.++.
T Consensus 3 ~~~~~~~~~~li~~~a~d~~~~~~~~~GGit~~~~i~~~A~~~gi~~~~h~~ 54 (111)
T PF13378_consen 3 SLFSLHDFRRLIEAGAVDIVQIDPTRCGGITEALRIAALAEAHGIPVMPHSM 54 (111)
T ss_dssp TSSSHHHHHHHHHTTSCSEEEEBHHHHTSHHHHHHHHHHHHHTT-EEEEBSS
T ss_pred CCCCHHHHHHHHHcCCCCEEEeCchhcCCHHHHHHHHHHHHHhCCCEEecCC
Confidence 45788899999998888999987554421 1236899999999999999886
No 71
>PRK14017 galactonate dehydratase; Provisional
Probab=55.22 E-value=1e+02 Score=29.72 Aligned_cols=69 Identities=14% Similarity=0.147 Sum_probs=54.3
Q ss_pred HHHHHHHHHcCccc-eEecCCCCHHHHHHHhccCCceEEecccccccc-chhhhHHHHHHHhCCceeeccc
Q 018374 155 IGELKMLVVEGKIK-YIGLSEASPDTIRRAHAVHPITAVQMEWSLLTR-DIEEEIIPLCRELGIGIVPYSP 223 (357)
Q Consensus 155 ~~aL~~L~~~G~ir-~iGvS~~~~~~l~~~~~~~~~~~~q~~~n~~~~-~~~~~~~~~~~~~gi~v~a~sp 223 (357)
++.+.+|+++..+. ..|=|.++...+..+++...++++|+..+..-- ....++.++|+.+||.++.++.
T Consensus 217 ~~~~~~L~~~~~~pIa~dEs~~~~~~~~~li~~~a~d~v~~d~~~~GGit~~~~ia~~A~~~gi~~~~h~~ 287 (382)
T PRK14017 217 AEALPEIAAQTSIPIATGERLFSRWDFKRVLEAGGVDIIQPDLSHAGGITECRKIAAMAEAYDVALAPHCP 287 (382)
T ss_pred HHHHHHHHhcCCCCEEeCCccCCHHHHHHHHHcCCCCeEecCccccCCHHHHHHHHHHHHHcCCeEeecCC
Confidence 78889999887766 555567899999999998888999987665421 1236899999999999988754
No 72
>PRK04452 acetyl-CoA decarbonylase/synthase complex subunit delta; Provisional
Probab=55.03 E-value=1.5e+02 Score=28.01 Aligned_cols=95 Identities=15% Similarity=0.202 Sum_probs=51.2
Q ss_pred HHHhHhCCCcccEEEeec-CCC-CCCccccccCCCChhHHHHHHHHHHHcCcc-ceEecCC---CCHHHHHHHhccCC-c
Q 018374 117 ASLKRLGVDYIDLYYQHR-VDP-SVPIEDTVCDSLPTSLNIGELKMLVVEGKI-KYIGLSE---ASPDTIRRAHAVHP-I 189 (357)
Q Consensus 117 ~sL~~Lg~d~iDl~~lH~-pd~-~~~~~~~~~~~~~~~~~~~aL~~L~~~G~i-r~iGvS~---~~~~~l~~~~~~~~-~ 189 (357)
+.-+.+|.|+||+-+.-. |+. +...++. ...++...+.=.+ -.|..|. -+++.+++.++... -
T Consensus 83 ~q~~~~GAd~Idl~~~s~dp~~~d~~~~e~----------~~~Vk~V~eavd~PL~Id~s~n~~kD~evleaale~~~g~ 152 (319)
T PRK04452 83 KCVEEYGADMITLHLISTDPNGKDKSPEEA----------AKTVEEVLQAVDVPLIIGGSGNPEKDAEVLEKVAEAAEGE 152 (319)
T ss_pred HHHHHhCCCEEEEECCCCCcccccchHHHH----------HHHHHHHHHhCCCCEEEecCCCCCCCHHHHHHHHHHhCCC
Confidence 444588988888765332 211 1111222 3333333232222 2255553 27888988877533 1
Q ss_pred eEEeccccccccchhhhHHHHHHHhCCceeecccC
Q 018374 190 TAVQMEWSLLTRDIEEEIIPLCRELGIGIVPYSPL 224 (357)
Q Consensus 190 ~~~q~~~n~~~~~~~~~~~~~~~~~gi~v~a~spl 224 (357)
......-| ..-...+.++|+++|..|++.+|.
T Consensus 153 ~pLInSat---~en~~~i~~lA~~y~~~Vva~s~~ 184 (319)
T PRK04452 153 RCLLGSAE---EDNYKKIAAAAMAYGHAVIAWSPL 184 (319)
T ss_pred CCEEEECC---HHHHHHHHHHHHHhCCeEEEEcHH
Confidence 12222222 211367999999999999998755
No 73
>PHA02128 hypothetical protein
Probab=54.68 E-value=36 Score=26.33 Aligned_cols=68 Identities=15% Similarity=0.235 Sum_probs=48.7
Q ss_pred HHHHHHHHHHcCccceEecCCCCHHHHHHHhcc-----------------C-CceEEec---cccccccchhhhHHHHHH
Q 018374 154 NIGELKMLVVEGKIKYIGLSEASPDTIRRAHAV-----------------H-PITAVQM---EWSLLTRDIEEEIIPLCR 212 (357)
Q Consensus 154 ~~~aL~~L~~~G~ir~iGvS~~~~~~l~~~~~~-----------------~-~~~~~q~---~~n~~~~~~~~~~~~~~~ 212 (357)
.+.--.++..+|-+|-|-+...+..+++..... . .+.+.++ +|.+-.+....++++|+-
T Consensus 62 l~~lane~~aqgg~r~itmn~ankrhv~dmv~~~wrgdi~ist~selt~~cp~vkflmideseytltsrh~rqeiydwag 141 (151)
T PHA02128 62 LLHLANEVSAQGGARIITMNSANKRHVQDMVSYQWRGDIRISTISELTDRCPKVKFLMIDESEYTLTSRHQRQEIYDWAG 141 (151)
T ss_pred HHHHHHHHHhcCCeEEEEeccchhhHHHHHhcccccCceEEeeHHHHhccCCeeEEEEEcchhceecchhhHHHHHhhcc
Confidence 377778899999999999877666666554332 2 2344444 566666555689999999
Q ss_pred HhCCceeec
Q 018374 213 ELGIGIVPY 221 (357)
Q Consensus 213 ~~gi~v~a~ 221 (357)
.||+.++.+
T Consensus 142 thgvefvim 150 (151)
T PHA02128 142 THGVEFVIM 150 (151)
T ss_pred cCceEEEEe
Confidence 999998764
No 74
>PRK00507 deoxyribose-phosphate aldolase; Provisional
Probab=54.11 E-value=63 Score=28.72 Aligned_cols=75 Identities=20% Similarity=0.210 Sum_probs=50.8
Q ss_pred CHHHHHHHHHHHHHcCCCeEeCccCcC-CCchHHHHHHHHhcCCCCCeEEEeeeeeccCCCcccccCCCHHHHHHHHHHH
Q 018374 40 SEEDGISIIKHAFNKGITFFDTADVYG-AHANEVLVGKVLKQLPRKKIQLASKFGVVSMAPTSVIVKGTPEYVRSCCEAS 118 (357)
Q Consensus 40 ~~~~~~~~l~~A~~~Gin~~DtA~~Yg-~g~sE~~lG~al~~~~R~~~~I~tK~~~~~~~~~~~~~~~~~~~i~~~v~~s 118 (357)
+.++..++.+.+.+.|..|+=|+..|+ .|.+.+.+....+. -+.++-|-.=.|.+ +.+...+-++.-
T Consensus 134 ~~e~i~~a~~~~~~agadfIKTsTG~~~~gat~~~v~~m~~~-~~~~~~IKasGGIr-----------t~~~a~~~i~aG 201 (221)
T PRK00507 134 TDEEKVKACEIAKEAGADFVKTSTGFSTGGATVEDVKLMRET-VGPRVGVKASGGIR-----------TLEDALAMIEAG 201 (221)
T ss_pred CHHHHHHHHHHHHHhCCCEEEcCCCCCCCCCCHHHHHHHHHH-hCCCceEEeeCCcC-----------CHHHHHHHHHcC
Confidence 778899999999999999999999995 46676666554443 22332222111222 577777777777
Q ss_pred HhHhCCCc
Q 018374 119 LKRLGVDY 126 (357)
Q Consensus 119 L~~Lg~d~ 126 (357)
-.|+|+.+
T Consensus 202 A~riGtS~ 209 (221)
T PRK00507 202 ATRLGTSA 209 (221)
T ss_pred cceEccCc
Confidence 77777653
No 75
>cd03323 D-glucarate_dehydratase D-Glucarate dehydratase (GlucD) catalyzes the dehydration of both D-glucarate and L-idarate to form 5-keto-4-deoxy-D-glucarate (5-KDG) , the initial reaction of the catabolic pathway for (D)-glucarate. GlucD belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and that is stabilized by coordination to the essential Mg2+ ion.
Probab=53.98 E-value=2.2e+02 Score=27.70 Aligned_cols=70 Identities=7% Similarity=0.033 Sum_probs=54.7
Q ss_pred HHHHHHHHHcCccc-eEecCCCCHHHHHHHhccCCceEEecccccccc-chhhhHHHHHHHhCCceeecccC
Q 018374 155 IGELKMLVVEGKIK-YIGLSEASPDTIRRAHAVHPITAVQMEWSLLTR-DIEEEIIPLCRELGIGIVPYSPL 224 (357)
Q Consensus 155 ~~aL~~L~~~G~ir-~iGvS~~~~~~l~~~~~~~~~~~~q~~~n~~~~-~~~~~~~~~~~~~gi~v~a~spl 224 (357)
++.+.+|++...+- +.|=|-++.+.+.++++..-++++|......-- ....++..+|+.+||.+..++..
T Consensus 250 ~~~~~~L~~~~~~PIa~dEs~~~~~~~~~~i~~~avdil~~d~~~~GGit~~~kia~~A~~~gi~~~~h~~~ 321 (395)
T cd03323 250 REGMAEFRRATGLPLATNMIVTDFRQLGHAIQLNAVDIPLADHHFWGGMRGSVRVAQVCETWGLGWGMHSNN 321 (395)
T ss_pred HHHHHHHHHhcCCCEEcCCcccCHHHHHHHHHcCCCcEEeeccccccCHHHHHHHHHHHHHcCCeEEEecCc
Confidence 78888899887666 556666788999999998889999887655431 12368999999999999887654
No 76
>PF00682 HMGL-like: HMGL-like of this family is not conserved in other members. are a sub-families of this Pfam.; InterPro: IPR000891 Pyruvate carboxylase (6.4.1.1 from EC) (PC), a member of the biotin-dependent enzyme family, is involved in the gluconeogenesis by mediating the carboxylation of pyruvate to oxaloacetate. Biotin-dependent carboxylase enzymes perform a two step reaction. Enzyme-bound biotin is first carboxylated by bicarbonate and ATP and the carboxyl group temporarily bound to biotin is subsequently transferred to an acceptor substrate such as pyruvate []. PC has three functional domains: a biotin carboxylase (BC) domain, a carboxyltransferase (CT) domain which perform the second part of the reaction and a biotinyl domain [, ]. The mechanism by which the carboxyl group is transferred from the carboxybiotin to the pyruvate is not well understood. The pyruvate carboxyltransferase domain is also found in other pyruvate binding enzymes and acetyl-CoA dependent enzymes suggesting that this domain can be associated with different enzymatic activities. This domain is found towards the N-terminal region of various aldolase enzymes. This N-terminal TIM barrel domain [] interacts with the C-terminal domain. The C-terminal DmpG_comm domain (IPR012425 from INTERPRO) is thought to promote heterodimerisation with members of IPR003361 from INTERPRO to form a bifunctional aldolase-dehydrogenase []. ; GO: 0003824 catalytic activity; PDB: 3MP5_E 3MP3_E 2CW6_E 3MP4_D 3HBL_A 3HB9_C 3HO8_A 3BG5_C 1YDN_B 3RMJ_A ....
Probab=53.81 E-value=1.6e+02 Score=26.04 Aligned_cols=155 Identities=16% Similarity=0.230 Sum_probs=82.0
Q ss_pred CCHHHHHHHHHHHHHcCCCeEeCccCcCCCchHHHHHHHHhcCCCCCeEEEeeeeeccCCCcccccCCCHHHHHHHHHHH
Q 018374 39 VSEEDGISIIKHAFNKGITFFDTADVYGAHANEVLVGKVLKQLPRKKIQLASKFGVVSMAPTSVIVKGTPEYVRSCCEAS 118 (357)
Q Consensus 39 ~~~~~~~~~l~~A~~~Gin~~DtA~~Yg~g~sE~~lG~al~~~~R~~~~I~tK~~~~~~~~~~~~~~~~~~~i~~~v~~s 118 (357)
.+.++..++++...+.||..|+++...-+....+.+-+..+..+. ..+.+-. +...+.++..++..
T Consensus 11 ~~~~~k~~i~~~L~~~Gv~~iEvg~~~~~~~~~~~v~~~~~~~~~--~~~~~~~------------~~~~~~i~~~~~~~ 76 (237)
T PF00682_consen 11 FSTEEKLEIAKALDEAGVDYIEVGFPFASEDDFEQVRRLREALPN--ARLQALC------------RANEEDIERAVEAA 76 (237)
T ss_dssp --HHHHHHHHHHHHHHTTSEEEEEHCTSSHHHHHHHHHHHHHHHS--SEEEEEE------------ESCHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHhCCCEEEEcccccCHHHHHHhhhhhhhhcc--cccceee------------eehHHHHHHHHHhh
Confidence 478999999999999999999999323221233445444443233 2222222 22455666666544
Q ss_pred HhHhCCCcccEEEeecC-----CCCCCccccccCCCChhHHHHHHHHHHHcCccceEecCC---CCHHHHHHHhcc---C
Q 018374 119 LKRLGVDYIDLYYQHRV-----DPSVPIEDTVCDSLPTSLNIGELKMLVVEGKIKYIGLSE---ASPDTIRRAHAV---H 187 (357)
Q Consensus 119 L~~Lg~d~iDl~~lH~p-----d~~~~~~~~~~~~~~~~~~~~aL~~L~~~G~ir~iGvS~---~~~~~l~~~~~~---~ 187 (357)
...|.+.+.++.==++ ......++ ....+.+.++..++.|.--.+++.. ++++.+.++.+. .
T Consensus 77 -~~~g~~~i~i~~~~s~~~~~~~~~~~~~~------~~~~~~~~v~~ak~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (237)
T PF00682_consen 77 -KEAGIDIIRIFISVSDLHIRKNLNKSREE------ALERIEEAVKYAKELGYEVAFGCEDASRTDPEELLELAEALAEA 149 (237)
T ss_dssp -HHTTSSEEEEEEETSHHHHHHHTCSHHHH------HHHHHHHHHHHHHHTTSEEEEEETTTGGSSHHHHHHHHHHHHHH
T ss_pred -HhccCCEEEecCcccHHHHHHhhcCCHHH------HHHHHHHHHHHHHhcCCceEeCccccccccHHHHHHHHHHHHHc
Confidence 4677776665531111 00000011 1233467777888899888888744 466665555433 2
Q ss_pred CceEEec--cccccccchhhhHHHHHHHh
Q 018374 188 PITAVQM--EWSLLTRDIEEEIIPLCREL 214 (357)
Q Consensus 188 ~~~~~q~--~~n~~~~~~~~~~~~~~~~~ 214 (357)
+++.+.+ .+..+.+..-.+++...+++
T Consensus 150 g~~~i~l~Dt~G~~~P~~v~~lv~~~~~~ 178 (237)
T PF00682_consen 150 GADIIYLADTVGIMTPEDVAELVRALREA 178 (237)
T ss_dssp T-SEEEEEETTS-S-HHHHHHHHHHHHHH
T ss_pred CCeEEEeeCccCCcCHHHHHHHHHHHHHh
Confidence 4454544 33344333224666666653
No 77
>cd03327 MR_like_2 Mandelate racemase (MR)-like subfamily of the enolase superfamily, subgroup 2. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. This subgroup's function is unknown.
Probab=53.79 E-value=2e+02 Score=27.21 Aligned_cols=68 Identities=18% Similarity=0.168 Sum_probs=52.8
Q ss_pred HHHHHHHHHcCccc-eEecCCCCHHHHHHHhccCCceEEecccccccc-chhhhHHHHHHHhCCceeecc
Q 018374 155 IGELKMLVVEGKIK-YIGLSEASPDTIRRAHAVHPITAVQMEWSLLTR-DIEEEIIPLCRELGIGIVPYS 222 (357)
Q Consensus 155 ~~aL~~L~~~G~ir-~iGvS~~~~~~l~~~~~~~~~~~~q~~~n~~~~-~~~~~~~~~~~~~gi~v~a~s 222 (357)
++.+..|+++..+. +.|=|.++...+.++++...++++|+..+-.-- ....++..+|+.+|+.++.++
T Consensus 211 ~~~~~~l~~~~~~pIa~gE~~~~~~~~~~~i~~~a~d~i~~d~~~~GGit~~~~i~~~A~~~g~~~~~h~ 280 (341)
T cd03327 211 IEGYAELKKATGIPISTGEHEYTVYGFKRLLEGRAVDILQPDVNWVGGITELKKIAALAEAYGVPVVPHA 280 (341)
T ss_pred HHHHHHHHhcCCCCeEeccCccCHHHHHHHHHcCCCCEEecCccccCCHHHHHHHHHHHHHcCCeecccc
Confidence 78888899887776 555566789999999998888999987655421 123689999999999987653
No 78
>cd01974 Nitrogenase_MoFe_beta Nitrogenase_MoFe_beta: Nitrogenase MoFe protein, beta subunit. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen to ammonia. The Molybdenum (Mo-) nitrogenase is the most widespread and best characterized of these systems. Mo-nitrogenase consists of the MoFe protein (component 1) and the Fe protein (component 2). MoFe is an alpha2beta2 tetramer. This group contains the beta subunit of the MoFe protein. Each alphabeta pair of MoFe contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha subunit. The Fe protein contains a single [4Fe-4S] cluster. Electrons are transferred from the [4Fe-4S] cluster of the Fe protein to the P-cluster of the MoFe and in turn to FeMoCo, the site of substrate reduction.
Probab=53.03 E-value=2.4e+02 Score=27.81 Aligned_cols=115 Identities=10% Similarity=0.073 Sum_probs=59.6
Q ss_pred eCccCcCCCchHHHHHHHHhcC----CCCCeEEEeeeeeccCCCcccccCCCHHHHHHHHHHHHhHhCC-CcccEEEeec
Q 018374 60 DTADVYGAHANEVLVGKVLKQL----PRKKIQLASKFGVVSMAPTSVIVKGTPEYVRSCCEASLKRLGV-DYIDLYYQHR 134 (357)
Q Consensus 60 DtA~~Yg~g~sE~~lG~al~~~----~R~~~~I~tK~~~~~~~~~~~~~~~~~~~i~~~v~~sL~~Lg~-d~iDl~~lH~ 134 (357)
+....|| .|+-|-++|++. +.+=++|.|-+-..-- -+.+..-+++.-++... ..+.++.++.
T Consensus 62 E~d~V~G---g~~~L~~ai~~~~~~~~p~~I~v~ttC~~~ii----------GdDi~~v~~~~~~~~~~~~~~~vi~v~t 128 (435)
T cd01974 62 EDAAVFG---GQNNLIDGLKNAYAVYKPDMIAVSTTCMAEVI----------GDDLNAFIKNAKNKGSIPADFPVPFANT 128 (435)
T ss_pred CCceEEC---cHHHHHHHHHHHHHhcCCCEEEEeCCchHhhh----------hccHHHHHHHHHHhccCCCCCeEEEecC
Confidence 3446778 577777888764 3444567776643321 12233333332233211 1478999998
Q ss_pred CCCCCCccccccCCCChhHHHHHHHH-HHH-------cCccceEe-cCCC-C-HHHHHHHhccCCceEEe
Q 018374 135 VDPSVPIEDTVCDSLPTSLNIGELKM-LVV-------EGKIKYIG-LSEA-S-PDTIRRAHAVHPITAVQ 193 (357)
Q Consensus 135 pd~~~~~~~~~~~~~~~~~~~~aL~~-L~~-------~G~ir~iG-vS~~-~-~~~l~~~~~~~~~~~~q 193 (357)
|+....... .+..++++|-+ +.. .+.|-=|| ..+. + .++++++++...+.++.
T Consensus 129 pgf~gs~~~------G~~~a~~al~~~l~~~~~~~~~~~~VNli~~~~~~~d~~~el~~lL~~~Gl~~~~ 192 (435)
T cd01974 129 PSFVGSHIT------GYDNMVKGILTHLTEGSGGAGKNGKLNIIPGFDTYAGNMREIKRLLELMGVDYTI 192 (435)
T ss_pred CCCccCHHH------HHHHHHHHHHHHHhcccCCCCCCCeEEEECCCCCCcchHHHHHHHHHHcCCCEEE
Confidence 876532211 12333555532 222 23354454 2222 3 67888888877766654
No 79
>PLN02363 phosphoribosylanthranilate isomerase
Probab=52.99 E-value=26 Score=31.94 Aligned_cols=73 Identities=21% Similarity=0.268 Sum_probs=46.7
Q ss_pred CHHHHHHHHHHHHhHhCCCcccEEEeecCCCCCCc-cccccCCCChhHHHHHHHHHHHcCccceEecC-CCCHHHHHHHh
Q 018374 107 TPEYVRSCCEASLKRLGVDYIDLYYQHRVDPSVPI-EDTVCDSLPTSLNIGELKMLVVEGKIKYIGLS-EASPDTIRRAH 184 (357)
Q Consensus 107 ~~~~i~~~v~~sL~~Lg~d~iDl~~lH~pd~~~~~-~~~~~~~~~~~~~~~aL~~L~~~G~ir~iGvS-~~~~~~l~~~~ 184 (357)
+.+.++... ++|+|++-+++.. .....+ .+. .+.|........++.|||. +.+++.+.+++
T Consensus 56 ~~eda~~a~-----~~GaD~iGfIf~~--~SpR~Vs~e~----------a~~I~~~l~~~~~~~VgVfv~~~~~~I~~~~ 118 (256)
T PLN02363 56 SARDAAMAV-----EAGADFIGMILWP--KSKRSISLSV----------AKEISQVAREGGAKPVGVFVDDDANTILRAA 118 (256)
T ss_pred cHHHHHHHH-----HcCCCEEEEecCC--CCCCcCCHHH----------HHHHHHhccccCccEEEEEeCCCHHHHHHHH
Confidence 455555444 5899999987433 222222 112 3444443333246679996 67999999999
Q ss_pred ccCCceEEeccc
Q 018374 185 AVHPITAVQMEW 196 (357)
Q Consensus 185 ~~~~~~~~q~~~ 196 (357)
+..+++++|++-
T Consensus 119 ~~~~ld~VQLHG 130 (256)
T PLN02363 119 DSSDLELVQLHG 130 (256)
T ss_pred HhcCCCEEEECC
Confidence 999999999974
No 80
>TIGR01502 B_methylAsp_ase methylaspartate ammonia-lyase. This model describes methylaspartate ammonia-lyase, also called beta-methylaspartase (EC 4.3.1.2). It follows methylaspartate mutase (composed of S and E subunits) in one of several possible pathways of glutamate fermentation.
Probab=52.09 E-value=1e+02 Score=30.26 Aligned_cols=70 Identities=13% Similarity=0.017 Sum_probs=52.1
Q ss_pred HHHHHHHHHc------CccceEecCCCCHHHHHHHhccCCceEEeccccccccc-hhhhHHHHHHHhCCceeecccC
Q 018374 155 IGELKMLVVE------GKIKYIGLSEASPDTIRRAHAVHPITAVQMEWSLLTRD-IEEEIIPLCRELGIGIVPYSPL 224 (357)
Q Consensus 155 ~~aL~~L~~~------G~ir~iGvS~~~~~~l~~~~~~~~~~~~q~~~n~~~~~-~~~~~~~~~~~~gi~v~a~spl 224 (357)
++.+.+|+++ ..=-..+=|.++.+.+.++++..-.+++|+..+-+--- ...++.++|+.+||.++..+..
T Consensus 281 ~e~la~Lr~~~~~~~~~vPI~aDEs~~t~~d~~~~i~~~a~d~v~iK~~k~GGIt~a~kia~lA~~~Gi~~~~g~~~ 357 (408)
T TIGR01502 281 IEAMADLRAELDGRGVDAEIVADEWCNTVEDVKFFTDAKAGHMVQIKTPDVGGVNNIARAIMYCKANGMGAYVGGTC 357 (408)
T ss_pred HHHHHHHHHHhhcCCCCceEEecCCCCCHHHHHHHHHhCCCCEEEeCccccCCHHHHHHHHHHHHHcCCEEEEeCCC
Confidence 7778888766 22224455667899999999988889999877654321 2368999999999999987654
No 81
>TIGR00190 thiC thiamine biosynthesis protein ThiC. The thiC ortholog is designated thiA in Bacillus subtilis.
Probab=51.97 E-value=1.2e+02 Score=29.42 Aligned_cols=142 Identities=13% Similarity=0.144 Sum_probs=85.4
Q ss_pred CHHHHHHHHHHHHHcCCCeE-eCccCcCCCchHHHHHHHHhcCCCCCeEEEeeeeeccCC--CcccccCCCHHHHHHHHH
Q 018374 40 SEEDGISIIKHAFNKGITFF-DTADVYGAHANEVLVGKVLKQLPRKKIQLASKFGVVSMA--PTSVIVKGTPEYVRSCCE 116 (357)
Q Consensus 40 ~~~~~~~~l~~A~~~Gin~~-DtA~~Yg~g~sE~~lG~al~~~~R~~~~I~tK~~~~~~~--~~~~~~~~~~~~i~~~v~ 116 (357)
+.+.-.+=++.|++.|-..+ |-|. .| .-..+-+.+-+ ...+-|.| +..+... ..+...+.+.+.+.+.++
T Consensus 75 d~~~E~~K~~~A~~~GADtiMDLSt-Gg---dl~~iR~~il~--~s~vpvGT-VPiYqa~~~~~~~~~~mt~d~~~~~ie 147 (423)
T TIGR00190 75 DIEEEVEKALIAIKYGADTVMDLST-GG---DLDEIRKAILD--AVPVPVGT-VPIYQAAEKVHGAVEDMDEDDMFRAIE 147 (423)
T ss_pred CHHHHHHHHHHHHHcCCCeEeeccC-CC---CHHHHHHHHHH--cCCCCccC-ccHHHHHHHhcCChhhCCHHHHHHHHH
Confidence 56666777899999998755 5443 34 33333333322 11222221 1110000 001134788888888888
Q ss_pred HHHhHhCCCcccEEEeecCCCCCCccccccCCCChhHHHHHHHHHHHcCccceEecCCCCHHHHHHHhccCCceEEeccc
Q 018374 117 ASLKRLGVDYIDLYYQHRVDPSVPIEDTVCDSLPTSLNIGELKMLVVEGKIKYIGLSEASPDTIRRAHAVHPITAVQMEW 196 (357)
Q Consensus 117 ~sL~~Lg~d~iDl~~lH~pd~~~~~~~~~~~~~~~~~~~~aL~~L~~~G~ir~iGvS~~~~~~l~~~~~~~~~~~~q~~~ 196 (357)
+..+ |-+|.+-||.-- + .+.++.++++|+ ..|+-+-....+...+.... .-
T Consensus 148 ~qa~----dGVDfmTiH~Gi-------~----------~~~~~~~~~~~R--~~giVSRGGs~~~~WM~~~~------~E 198 (423)
T TIGR00190 148 KQAK----DGVDFMTIHAGV-------L----------LEYVERLKRSGR--ITGIVSRGGAILAAWMLHHH------KE 198 (423)
T ss_pred HHHH----hCCCEEEEccch-------h----------HHHHHHHHhCCC--ccCeecCcHHHHHHHHHHcC------Cc
Confidence 8776 558899999942 2 788999999996 56776655555555443322 23
Q ss_pred cccccchhhhHHHHHHHhCCce
Q 018374 197 SLLTRDIEEEIIPLCRELGIGI 218 (357)
Q Consensus 197 n~~~~~~~~~~~~~~~~~gi~v 218 (357)
|++...+ .++++.|++++|.+
T Consensus 199 NPlye~f-D~lLeI~~~yDVtl 219 (423)
T TIGR00190 199 NPLYKNF-DYILEIAKEYDVTL 219 (423)
T ss_pred CchHHHH-HHHHHHHHHhCeee
Confidence 5655543 57889999998887
No 82
>PRK05283 deoxyribose-phosphate aldolase; Provisional
Probab=50.84 E-value=1.1e+02 Score=28.02 Aligned_cols=88 Identities=19% Similarity=0.099 Sum_probs=56.4
Q ss_pred ccceeccccccCCCCCCCCHH-HHHHHHHHHHHcCCCeEeCccCcCC-CchHHHH---HHHHhcC-CCCCeEEEeeeeec
Q 018374 22 SKLGFGCMGLTGMYNSPVSEE-DGISIIKHAFNKGITFFDTADVYGA-HANEVLV---GKVLKQL-PRKKIQLASKFGVV 95 (357)
Q Consensus 22 s~lglG~~~~g~~~~~~~~~~-~~~~~l~~A~~~Gin~~DtA~~Yg~-g~sE~~l---G~al~~~-~R~~~~I~tK~~~~ 95 (357)
-++++=+..+ +.+ +..++.+.|.++|..|+=|+.-|+. |-+.+.+ -+.+++. ...+ |..|.
T Consensus 134 lKVIlEt~~L--------~~ee~i~~a~~~a~~aGADFVKTSTGf~~~gAt~edv~lm~~~i~~~~~~~~--vgIKA--- 200 (257)
T PRK05283 134 LKVIIETGEL--------KDEALIRKASEIAIKAGADFIKTSTGKVPVNATLEAARIMLEVIRDMGVAKT--VGFKP--- 200 (257)
T ss_pred EEEEEecccc--------CCHHHHHHHHHHHHHhCCCEEEcCCCCCCCCCCHHHHHHHHHHHHhcccCCC--eeEEc---
Confidence 3455555544 445 5899999999999999999999974 4444333 3333321 0111 33343
Q ss_pred cCCCcccccCCCHHHHHHHHHHHHhHhCCCccc
Q 018374 96 SMAPTSVIVKGTPEYVRSCCEASLKRLGVDYID 128 (357)
Q Consensus 96 ~~~~~~~~~~~~~~~i~~~v~~sL~~Lg~d~iD 128 (357)
.++ =.+.+...+-++..-+.||.+|++
T Consensus 201 -sGG-----Irt~~~A~~~i~ag~~~lg~~~~~ 227 (257)
T PRK05283 201 -AGG-----VRTAEDAAQYLALADEILGADWAD 227 (257)
T ss_pred -cCC-----CCCHHHHHHHHHHHHHHhChhhcC
Confidence 111 126888999999999999988754
No 83
>COG0635 HemN Coproporphyrinogen III oxidase and related Fe-S oxidoreductases [Coenzyme metabolism]
Probab=50.33 E-value=1.1e+02 Score=30.02 Aligned_cols=119 Identities=19% Similarity=0.228 Sum_probs=69.7
Q ss_pred cccceeccccccC----CCCCCCCHHHHHHHHHHHHHcCCCeEeCccCcCCCchHHHHHHHHhcCCCCCeEEEeeeeecc
Q 018374 21 VSKLGFGCMGLTG----MYNSPVSEEDGISIIKHAFNKGITFFDTADVYGAHANEVLVGKVLKQLPRKKIQLASKFGVVS 96 (357)
Q Consensus 21 vs~lglG~~~~g~----~~~~~~~~~~~~~~l~~A~~~Gin~~DtA~~Yg~g~sE~~lG~al~~~~R~~~~I~tK~~~~~ 96 (357)
|.+|.+|-.+|.. ..|+..+.+++..+++.+-+.|+.-|=.==.||-
T Consensus 148 vNRiSlGVQsf~~~~lk~lgR~h~~~~~~~a~~~~~~~g~~~in~DLIygl----------------------------- 198 (416)
T COG0635 148 VNRISLGVQSFNDEVLKALGRIHDEEEAKEAVELARKAGFTSINIDLIYGL----------------------------- 198 (416)
T ss_pred CCEEEeccccCCHHHHHHhcCCCCHHHHHHHHHHHHHcCCCcEEEEeecCC-----------------------------
Confidence 3478888777763 1233346677788888888877776544344551
Q ss_pred CCCcccccCCCHHHHHHHHHHHHhHhCCCcccEEEe-ecCCCCCC---ccc-cccCCCChhHHHHH-HHHHHHcCccceE
Q 018374 97 MAPTSVIVKGTPEYVRSCCEASLKRLGVDYIDLYYQ-HRVDPSVP---IED-TVCDSLPTSLNIGE-LKMLVVEGKIKYI 170 (357)
Q Consensus 97 ~~~~~~~~~~~~~~i~~~v~~sL~~Lg~d~iDl~~l-H~pd~~~~---~~~-~~~~~~~~~~~~~a-L~~L~~~G~ir~i 170 (357)
..-+.+.+.+.+++.++ |+.|+|.+|.+ |-|..... ... ...+.....+.++. .+.|.+.|. +.|
T Consensus 199 -------P~QT~~~~~~~l~~a~~-l~pdhis~y~L~~~p~t~~~~~~~~~~~lP~~d~~~~~~~~~~e~L~~~Gy-~~y 269 (416)
T COG0635 199 -------PGQTLESLKEDLEQALE-LGPDHLSLYSLAIEPGTKFAQRKIKGKALPDEDEKADMYELVEELLEKAGY-RQY 269 (416)
T ss_pred -------CCCCHHHHHHHHHHHHh-CCCCEEEEeeeecCCCchhhhhcccCCCCcChHHHHHHHHHHHHHHHHCCC-cEE
Confidence 12366777777777664 67999999977 55422110 000 00000111222333 445666777 899
Q ss_pred ecCCCCH
Q 018374 171 GLSEASP 177 (357)
Q Consensus 171 GvS~~~~ 177 (357)
|+|||..
T Consensus 270 eisnfa~ 276 (416)
T COG0635 270 EISNFAK 276 (416)
T ss_pred eechhcC
Confidence 9999976
No 84
>COG2089 SpsE Sialic acid synthase [Cell envelope biogenesis, outer membrane]
Probab=50.22 E-value=1.2e+02 Score=28.62 Aligned_cols=119 Identities=20% Similarity=0.181 Sum_probs=73.6
Q ss_pred CCHHHHHHHHHHHHHcCCCeEeCccCcCC--------------Cc----hHHHHHHHHhcCCCCCeEEEeeeeeccCCCc
Q 018374 39 VSEEDGISIIKHAFNKGITFFDTADVYGA--------------HA----NEVLVGKVLKQLPRKKIQLASKFGVVSMAPT 100 (357)
Q Consensus 39 ~~~~~~~~~l~~A~~~Gin~~DtA~~Yg~--------------g~----sE~~lG~al~~~~R~~~~I~tK~~~~~~~~~ 100 (357)
++.+...++.+.|-+.|+-+|=|--.+.. +. ...++-...+ .-..+.++|=.
T Consensus 87 ~p~e~~~~Lke~a~~~Gi~~~SSPfd~~svd~l~~~~~~ayKIaS~E~~~~plik~iA~--~~kPiIlSTGm-------- 156 (347)
T COG2089 87 TPLEWHAQLKEYARKRGIIFFSSPFDLTAVDLLESLNPPAYKIASGEINDLPLIKYIAK--KGKPIILSTGM-------- 156 (347)
T ss_pred CCHHHHHHHHHHHHHcCeEEEecCCCHHHHHHHHhcCCCeEEecCccccChHHHHHHHh--cCCCEEEEccc--------
Confidence 47777889999999999988865543331 00 1122222222 22345555533
Q ss_pred ccccCCCHHHHHHHHHHHHhHhCCCcccEEEeecCCCC-CCccccccCCCChhHHHHHHHHHHHcCccceEecCCCCHHH
Q 018374 101 SVIVKGTPEYVRSCCEASLKRLGVDYIDLYYQHRVDPS-VPIEDTVCDSLPTSLNIGELKMLVVEGKIKYIGLSEASPDT 179 (357)
Q Consensus 101 ~~~~~~~~~~i~~~v~~sL~~Lg~d~iDl~~lH~pd~~-~~~~~~~~~~~~~~~~~~aL~~L~~~G~ir~iGvS~~~~~~ 179 (357)
.+-+.|.++++...++=. .|+.+||+...+ .+.++.. +.+|..|++.= .--||+|.|+...
T Consensus 157 -----a~~~ei~~av~~~r~~g~---~~i~LLhC~s~YPap~ed~N---------L~~i~~l~~~F-n~~vGlSDHT~g~ 218 (347)
T COG2089 157 -----ATIEEIEEAVAILRENGN---PDIALLHCTSAYPAPFEDVN---------LKAIPKLAEAF-NAIVGLSDHTLGI 218 (347)
T ss_pred -----ccHHHHHHHHHHHHhcCC---CCeEEEEecCCCCCCHHHhh---------HHHHHHHHHHh-CCccccccCccch
Confidence 245677777776555433 399999998654 4556654 66677776664 4469999998876
Q ss_pred HHHHhc
Q 018374 180 IRRAHA 185 (357)
Q Consensus 180 l~~~~~ 185 (357)
+.-+.+
T Consensus 219 ~a~l~A 224 (347)
T COG2089 219 LAPLAA 224 (347)
T ss_pred hHHHHH
Confidence 555433
No 85
>PF05690 ThiG: Thiazole biosynthesis protein ThiG; InterPro: IPR008867 This family consists of several bacterial thiazole biosynthesis protein G sequences. ThiG, together with ThiF and ThiH, is proposed to be involved in the synthesis of 4-methyl-5-(b-hydroxyethyl)thiazole (THZ) which is an intermediate in the thiazole production pathway [].; GO: 0009228 thiamine biosynthetic process; PDB: 1WV2_B 1TYG_C 1XM3_B 2HTM_C 2YZR_C.
Probab=49.80 E-value=66 Score=28.92 Aligned_cols=113 Identities=18% Similarity=0.162 Sum_probs=60.4
Q ss_pred ccceeccccccCCCCCCCCHHHHHHHHHHHHHc-CCCeEeCccCcCC--C-chHHHHHHHHhcCCCCCeEEEeeeeeccC
Q 018374 22 SKLGFGCMGLTGMYNSPVSEEDGISIIKHAFNK-GITFFDTADVYGA--H-ANEVLVGKVLKQLPRKKIQLASKFGVVSM 97 (357)
Q Consensus 22 s~lglG~~~~g~~~~~~~~~~~~~~~l~~A~~~-Gin~~DtA~~Yg~--g-~sE~~lG~al~~~~R~~~~I~tK~~~~~~ 97 (357)
|+|.+||..+. + .+++..|+++ |-..+=.|=---+ + ..+..+ +.-.+++++.+.-.. .
T Consensus 9 SRL~lGTgky~-------s----~~~m~~ai~aSg~evvTvalRR~~~~~~~~~~~~---~~~i~~~~~~lLPNT---a- 70 (247)
T PF05690_consen 9 SRLILGTGKYP-------S----PEVMREAIEASGAEVVTVALRRVNLGSKPGGDNI---LDYIDRSGYTLLPNT---A- 70 (247)
T ss_dssp -SEEEE-STSS-------S----HHHHHHHHHHTT-SEEEEECCGSTTTS-TTCHHC---CCCTTCCTSEEEEE----T-
T ss_pred cceEEecCCCC-------C----HHHHHHHHHHhCCcEEEEEEecccCCCCCCCccH---HHHhcccCCEECCcC---C-
Confidence 88999997753 2 4566666654 6666654411110 0 011112 222255665543222 1
Q ss_pred CCcccccCCCHHHHHHHHHHHHhHhCCCcccEEEeecCCCCCCccccccCCCChhHHHHHHHHHHHcCcc
Q 018374 98 APTSVIVKGTPEYVRSCCEASLKRLGVDYIDLYYQHRVDPSVPIEDTVCDSLPTSLNIGELKMLVVEGKI 167 (357)
Q Consensus 98 ~~~~~~~~~~~~~i~~~v~~sL~~Lg~d~iDl~~lH~pd~~~~~~~~~~~~~~~~~~~~aL~~L~~~G~i 167 (357)
-..+.+.-.+..+-+.+.+++++|-+=.+..+....+ +-.++++|-+.|+++|-+
T Consensus 71 ------Gc~tA~EAv~~A~laRe~~~t~wIKLEVi~D~~~L~P---------D~~etl~Aae~Lv~eGF~ 125 (247)
T PF05690_consen 71 ------GCRTAEEAVRTARLAREAFGTNWIKLEVIGDDKTLLP---------DPIETLKAAEILVKEGFV 125 (247)
T ss_dssp ------T-SSHHHHHHHHHHHHHTTS-SEEEE--BS-TTT--B----------HHHHHHHHHHHHHTT-E
T ss_pred ------CCCCHHHHHHHHHHHHHHcCCCeEEEEEeCCCCCcCC---------ChhHHHHHHHHHHHCCCE
Confidence 1567888888899999999998888766655543322 234559999999999863
No 86
>PRK14461 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=49.38 E-value=1.1e+02 Score=29.65 Aligned_cols=97 Identities=12% Similarity=0.158 Sum_probs=59.4
Q ss_pred EEeecCCCCCCccccc-cCCCChhHHHHHHHHHHHcCccc----eEecC--CCCHH---HHHHHhccC------CceEEe
Q 018374 130 YYQHRVDPSVPIEDTV-CDSLPTSLNIGELKMLVVEGKIK----YIGLS--EASPD---TIRRAHAVH------PITAVQ 193 (357)
Q Consensus 130 ~~lH~pd~~~~~~~~~-~~~~~~~~~~~aL~~L~~~G~ir----~iGvS--~~~~~---~l~~~~~~~------~~~~~q 193 (357)
+.||.|+......-+. ....++.+.++++.+..++..=| |+=+. |.+.+ .|.++++.. +..++-
T Consensus 232 iSLHA~~~e~R~~lmPin~~ypl~eLl~a~~~y~~~t~rrit~EYvLi~gvNDs~e~A~~L~~llk~~~~~~~l~~~VNL 311 (371)
T PRK14461 232 ISLHAPDDALRSELMPVNRRYPIADLMAATRDYIAKTRRRVSFEYVLLQGKNDHPEQAAALARLLRGEAPPGPLLVHVNL 311 (371)
T ss_pred EEeCCCCHHHHHHhcCcccCCCHHHHHHHHHHHHHhhCCEEEEEEEEECCCCCCHHHHHHHHHHHcCCccccCCceEEEE
Confidence 6899997643211111 12346677788888886543312 22222 33444 455555555 568999
Q ss_pred ccccccccc----h----hhhHHHHHHHhCCceeecccCcc
Q 018374 194 MEWSLLTRD----I----EEEIIPLCRELGIGIVPYSPLGR 226 (357)
Q Consensus 194 ~~~n~~~~~----~----~~~~~~~~~~~gi~v~a~spl~~ 226 (357)
++||+.... + -..+.+.++++||.+......+.
T Consensus 312 Ip~Np~~~~~~~~ps~~~i~~F~~~L~~~gi~vtiR~s~G~ 352 (371)
T PRK14461 312 IPWNPVPGTPLGRSERERVTTFQRILTDYGIPCTVRVERGV 352 (371)
T ss_pred ecCCCCCCCCCCCCCHHHHHHHHHHHHHCCceEEEeCCCCc
Confidence 999997542 1 14677888899999998877743
No 87
>PF14871 GHL6: Hypothetical glycosyl hydrolase 6
Probab=49.34 E-value=33 Score=27.82 Aligned_cols=25 Identities=32% Similarity=0.575 Sum_probs=20.7
Q ss_pred cchhhhHHHHHHHhCCceeecccCc
Q 018374 201 RDIEEEIIPLCRELGIGIVPYSPLG 225 (357)
Q Consensus 201 ~~~~~~~~~~~~~~gi~v~a~spl~ 225 (357)
++...++++.|+++||.|++|-.+.
T Consensus 43 ~Dllge~v~a~h~~Girv~ay~~~~ 67 (132)
T PF14871_consen 43 RDLLGEQVEACHERGIRVPAYFDFS 67 (132)
T ss_pred cCHHHHHHHHHHHCCCEEEEEEeee
Confidence 3445789999999999999986665
No 88
>PLN02389 biotin synthase
Probab=49.06 E-value=2.2e+02 Score=27.60 Aligned_cols=108 Identities=19% Similarity=0.237 Sum_probs=56.3
Q ss_pred CCHHHHHHHHHHHHHcCCCeEeCccCc-CC-C--chHHHHHHHHhcCCCCCeEEEeeeeeccCCCcccccCCCHHHHHHH
Q 018374 39 VSEEDGISIIKHAFNKGITFFDTADVY-GA-H--ANEVLVGKVLKQLPRKKIQLASKFGVVSMAPTSVIVKGTPEYVRSC 114 (357)
Q Consensus 39 ~~~~~~~~~l~~A~~~Gin~~DtA~~Y-g~-g--~sE~~lG~al~~~~R~~~~I~tK~~~~~~~~~~~~~~~~~~~i~~~ 114 (357)
.+.++..+.++.+.+.|++.|--...+ +. + ..-+.+-+.++......+.|+...|.. +.+
T Consensus 116 Ls~EeIl~~a~~~~~~G~~~~~ivts~rg~~~e~~~~e~i~eiir~ik~~~l~i~~s~G~l-----------~~E----- 179 (379)
T PLN02389 116 MSKDDVLEAAKRAKEAGSTRFCMGAAWRDTVGRKTNFNQILEYVKEIRGMGMEVCCTLGML-----------EKE----- 179 (379)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEEecccCCCCChhHHHHHHHHHHHHhcCCcEEEECCCCC-----------CHH-----
Confidence 588999999999999999988532111 11 1 112355555655432234454433322 222
Q ss_pred HHHHHhHhCCCcccEEEeecCCCCCCccccccCCCChhHHHHHHHHHHHcCc
Q 018374 115 CEASLKRLGVDYIDLYYQHRVDPSVPIEDTVCDSLPTSLNIGELKMLVVEGK 166 (357)
Q Consensus 115 v~~sL~~Lg~d~iDl~~lH~pd~~~~~~~~~~~~~~~~~~~~aL~~L~~~G~ 166 (357)
.-+.|...|+|++- |..+.....-........+.+-++.++.+++.|.
T Consensus 180 ~l~~LkeAGld~~~----~~LeTs~~~y~~i~~~~s~e~rl~ti~~a~~~Gi 227 (379)
T PLN02389 180 QAAQLKEAGLTAYN----HNLDTSREYYPNVITTRSYDDRLETLEAVREAGI 227 (379)
T ss_pred HHHHHHHcCCCEEE----eeecCChHHhCCcCCCCCHHHHHHHHHHHHHcCC
Confidence 22234444666532 3333211000001122356667899999999985
No 89
>PRK08195 4-hyroxy-2-oxovalerate/4-hydroxy-2-oxopentanoic acid aldolase,; Validated
Probab=48.95 E-value=2.4e+02 Score=26.77 Aligned_cols=25 Identities=12% Similarity=0.138 Sum_probs=22.4
Q ss_pred CCCHHHHHHHHHHHHHcCCCeEeCc
Q 018374 38 PVSEEDGISIIKHAFNKGITFFDTA 62 (357)
Q Consensus 38 ~~~~~~~~~~l~~A~~~Gin~~DtA 62 (357)
..+.++..++++..-++||..|+.+
T Consensus 21 ~f~~~~~~~i~~~L~~aGv~~IEvg 45 (337)
T PRK08195 21 QYTLEQVRAIARALDAAGVPVIEVT 45 (337)
T ss_pred ccCHHHHHHHHHHHHHcCCCEEEee
Confidence 3478999999999999999999985
No 90
>TIGR03247 glucar-dehydr glucarate dehydratase. Glucarate dehydratase converts D-glucarate (and L-idarate, a stereoisomer) to 5-dehydro-4-deoxyglucarate which is subsequently acted on by GarL, tartronate semialdehyde reductase and glycerate kinase (, GenProp0716). The E. coli enzyme has been well-characterized.
Probab=48.88 E-value=2.8e+02 Score=27.47 Aligned_cols=70 Identities=7% Similarity=0.026 Sum_probs=50.5
Q ss_pred HHHHHHHHHcCccc-eEecCCCCHHHHHHHhccCCceEEeccccccccchhhhHHHHHHHhCCceeecccC
Q 018374 155 IGELKMLVVEGKIK-YIGLSEASPDTIRRAHAVHPITAVQMEWSLLTRDIEEEIIPLCRELGIGIVPYSPL 224 (357)
Q Consensus 155 ~~aL~~L~~~G~ir-~iGvS~~~~~~l~~~~~~~~~~~~q~~~n~~~~~~~~~~~~~~~~~gi~v~a~spl 224 (357)
++.+.+|++...|- +.|=+.++.+.+..+++..-++++|......--....++.+.|+.+|+.+..++..
T Consensus 268 ~~~la~Lr~~~~iPIa~dEs~~~~~~~~~li~~~avdi~~~d~~~gGIt~~~kIa~lA~a~Gi~v~~h~~~ 338 (441)
T TIGR03247 268 REVMAEFRRATGLPTATNMIATDWRQMGHALQLQAVDIPLADPHFWTMQGSVRVAQMCHDWGLTWGSHSNN 338 (441)
T ss_pred HHHHHHHHHhCCCCEEcCCccCCHHHHHHHHHhCCCCEEeccCCcchHHHHHHHHHHHHHcCCEEEEeCCc
Confidence 56778887776655 33556678999999999888888888753221112368999999999998876543
No 91
>TIGR03217 4OH_2_O_val_ald 4-hydroxy-2-oxovalerate aldolase. Members of this protein family are 4-hydroxy-2-oxovalerate aldolase, also called 4-hydroxy-2-ketovalerate aldolase and 2-oxo-4-hydroxypentanoate aldolase. This enzyme, part of the pathway for the meta-cleavage of catechol, produces pyruvate and acetaldehyde. Acetaldehyde is then converted by acetaldehyde dehydrogenase (acylating) (DmpF; EC 1.2.1.10) to acetyl-CoA. The two enzymes are tightly associated.
Probab=48.55 E-value=2.5e+02 Score=26.70 Aligned_cols=25 Identities=12% Similarity=0.097 Sum_probs=22.3
Q ss_pred CCCHHHHHHHHHHHHHcCCCeEeCc
Q 018374 38 PVSEEDGISIIKHAFNKGITFFDTA 62 (357)
Q Consensus 38 ~~~~~~~~~~l~~A~~~Gin~~DtA 62 (357)
..+.++..+++...-+.|+..|+.+
T Consensus 20 ~f~~~~~~~ia~~Ld~aGV~~IEvg 44 (333)
T TIGR03217 20 QFTIEQVRAIAAALDEAGVDAIEVT 44 (333)
T ss_pred cCCHHHHHHHHHHHHHcCCCEEEEe
Confidence 3478999999999999999999985
No 92
>TIGR02311 HpaI 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase. This model represents the aldolase which performs the final step unique to the 4-hydroxyphenylacetic acid catabolism pathway in which 2,4-dihydroxyhept-2-ene-1,7-dioic acid is split into pyruvate and succinate-semialdehyde. The gene for enzyme is generally found adjacent to other genes for this pathway organized into an operon.
Probab=48.44 E-value=2.1e+02 Score=25.86 Aligned_cols=62 Identities=18% Similarity=0.001 Sum_probs=33.5
Q ss_pred HHHHHHcCccceEecC--CCCHHHHHHHhccCCceEE--eccccccccchhhhHHHHHHHhCCceeec
Q 018374 158 LKMLVVEGKIKYIGLS--EASPDTIRRAHAVHPITAV--QMEWSLLTRDIEEEIIPLCRELGIGIVPY 221 (357)
Q Consensus 158 L~~L~~~G~ir~iGvS--~~~~~~l~~~~~~~~~~~~--q~~~n~~~~~~~~~~~~~~~~~gi~v~a~ 221 (357)
|.+..++|+. -+|+- ..++..++.+ ...++|++ =++.++.+...-..++..++..|+.++..
T Consensus 3 lk~~l~~g~~-~~g~~~~~~~p~~~e~~-~~~g~D~v~iDlEH~~~~~~~~~~~~~a~~~~g~~~~VR 68 (249)
T TIGR02311 3 FKQALKEGQP-QIGLWLGLADPYAAEIC-AGAGFDWLLIDGEHAPNDVRTILSQLQALAPYPSSPVVR 68 (249)
T ss_pred HHHHHHCCCc-eEEEEEeCCCcHHHHHH-HhcCCCEEEEeccCCCCCHHHHHHHHHHHHhcCCCcEEE
Confidence 4455566775 35542 2344444444 43445554 44777765432244666666667766665
No 93
>COG4464 CapC Capsular polysaccharide biosynthesis protein [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=48.07 E-value=78 Score=28.09 Aligned_cols=66 Identities=17% Similarity=0.101 Sum_probs=46.3
Q ss_pred CCCCCCCHHHHHHHHHHHHHcCCCeEeCccCcCCCchHHHHHHHHhcCCCCCeEEEeeeeeccCCCcccccCCCHHHHHH
Q 018374 34 MYNSPVSEEDGISIIKHAFNKGITFFDTADVYGAHANEVLVGKVLKQLPRKKIQLASKFGVVSMAPTSVIVKGTPEYVRS 113 (357)
Q Consensus 34 ~~~~~~~~~~~~~~l~~A~~~Gin~~DtA~~Yg~g~sE~~lG~al~~~~R~~~~I~tK~~~~~~~~~~~~~~~~~~~i~~ 113 (357)
+.|+. +.++..++++.|.+.|++-+=..++|-.|+= ..+.+.|++
T Consensus 13 DDGp~-s~eesl~ml~~A~~qGvt~iVaTsHh~~g~y----------------------------------~n~~~~v~~ 57 (254)
T COG4464 13 DDGPK-SLEESLAMLREAVRQGVTKIVATSHHLHGRY----------------------------------ENPIEKVKE 57 (254)
T ss_pred CCCCC-cHHHHHHHHHHHHHcCceEEeecccccCCcc----------------------------------CChHHHHHH
Confidence 34554 8899999999999999998876666654321 335666667
Q ss_pred HHHHHHhHhCCCcccEEEeec
Q 018374 114 CCEASLKRLGVDYIDLYYQHR 134 (357)
Q Consensus 114 ~v~~sL~~Lg~d~iDl~~lH~ 134 (357)
.+.+.-+.+...-+|+-.+-.
T Consensus 58 ~~~~ln~~~~~~aidl~v~pG 78 (254)
T COG4464 58 KANQLNEILKKEAIDLKVLPG 78 (254)
T ss_pred HHHHHHHHHHhhcCCceeccC
Confidence 777776777666677666544
No 94
>PF11242 DUF2774: Protein of unknown function (DUF2774); InterPro: IPR021404 This entry is represented by Bacteriophage T4, Gp24.3; it is a family of uncharacterised viral proteins.
Probab=47.33 E-value=25 Score=24.36 Aligned_cols=22 Identities=18% Similarity=0.335 Sum_probs=20.0
Q ss_pred HHHHHHHhcCCChHHHHHHHHH
Q 018374 264 RVENLAKRNKCTPAQLSLAWLL 285 (357)
Q Consensus 264 ~l~~ia~~~g~s~~q~al~~~l 285 (357)
.+.+||+++|+++.++|..|+.
T Consensus 15 ~FveIAr~~~i~a~e~a~~w~~ 36 (63)
T PF11242_consen 15 SFVEIARKIGITAKEVAKAWAE 36 (63)
T ss_pred cHHHHHHHhCCCHHHHHHHHHH
Confidence 4788999999999999999985
No 95
>PRK05588 histidinol-phosphatase; Provisional
Probab=47.32 E-value=2.1e+02 Score=25.66 Aligned_cols=157 Identities=13% Similarity=0.108 Sum_probs=76.3
Q ss_pred HHHHHHHHHHHHHcCCCeEeCccCcCCC---------chHHHHHHHHhcCCCCCeEEEeeeeeccCCCcccccCCCHHHH
Q 018374 41 EEDGISIIKHAFNKGITFFDTADVYGAH---------ANEVLVGKVLKQLPRKKIQLASKFGVVSMAPTSVIVKGTPEYV 111 (357)
Q Consensus 41 ~~~~~~~l~~A~~~Gin~~DtA~~Yg~g---------~sE~~lG~al~~~~R~~~~I~tK~~~~~~~~~~~~~~~~~~~i 111 (357)
.....+.++.|.+.|+..+ .++|..-. .-+..+ +.++....-+|.+..-++.. ++ .
T Consensus 15 ~~~~ee~v~~A~~~Gl~~~-~TdH~~~~~~~~~~~~~~~~~y~-~~i~~~~~~~I~~GiE~~~~------------~~-~ 79 (255)
T PRK05588 15 KMKIEEAIKKAKENNLGII-ITEHMDLNLPDKNKFCFDVDSYF-NKYSKYRNNKLLLGIELGME------------KD-L 79 (255)
T ss_pred ccCHHHHHHHHHHcCCCEE-EeCCCCCCCCCccccccCHHHHH-HHHHHHhcCCcceEEEeccc------------CC-C
Confidence 3457899999999999998 77664210 011222 11222122344444444322 22 3
Q ss_pred HHHHHHHHhHhCCCcccEEEeecCCCCCCccccccCCCChhHH----HHHHHHHHH-cCccceEecCCCCHHHHHHHhcc
Q 018374 112 RSCCEASLKRLGVDYIDLYYQHRVDPSVPIEDTVCDSLPTSLN----IGELKMLVV-EGKIKYIGLSEASPDTIRRAHAV 186 (357)
Q Consensus 112 ~~~v~~sL~~Lg~d~iDl~~lH~pd~~~~~~~~~~~~~~~~~~----~~aL~~L~~-~G~ir~iGvS~~~~~~l~~~~~~ 186 (357)
...+++.|++...|++ +..+|+.+.........|......+. ++.+.++.+ .|.+.-+|= ++.+.+....
T Consensus 80 ~~~~~~~l~~~~~D~v-igSvH~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~~~~v~~~~~~dvlgH----~Dl~~r~~~~ 154 (255)
T PRK05588 80 IEENKELINKYEFDYV-IGSIHLVDKLDLYLDEFYKDKSKEEAYHIYFENMLKCLEKYDFIDSLGH----IDYISRYAKY 154 (255)
T ss_pred HHHHHHHHhhCCCCeE-EEeEEeeCCCcchHHHHhcCCCHHHHHHHHHHHHHHHHHhcCCCCCccC----HhHHHHcCcc
Confidence 5566777887777777 78999865221110011111112222 355555555 355544442 2333332111
Q ss_pred CCceEEeccccccccchhhhHHHHHHHhCCceeec
Q 018374 187 HPITAVQMEWSLLTRDIEEEIIPLCRELGIGIVPY 221 (357)
Q Consensus 187 ~~~~~~q~~~n~~~~~~~~~~~~~~~~~gi~v~a~ 221 (357)
..... .+.-+ ...-.++++.+.++|+.+-..
T Consensus 155 ~~~~~---~~~~~-~~~~~~il~~~~~~g~~lEIN 185 (255)
T PRK05588 155 EDKEI---YYDEF-KEIIDEILKVLIEKEKVLEIN 185 (255)
T ss_pred ccccc---cHHHH-HHHHHHHHHHHHHcCCEEEEE
Confidence 10000 00001 111257889999999888554
No 96
>PRK07259 dihydroorotate dehydrogenase 1B; Reviewed
Probab=46.98 E-value=2.4e+02 Score=26.09 Aligned_cols=164 Identities=15% Similarity=0.112 Sum_probs=92.2
Q ss_pred CHHHHHHHHHHHHHcC-CCeEeC---ccC-----cCCCchHHHHHHHHhcCC-CCCeEEEeeeeeccCCCcccccCCCHH
Q 018374 40 SEEDGISIIKHAFNKG-ITFFDT---ADV-----YGAHANEVLVGKVLKQLP-RKKIQLASKFGVVSMAPTSVIVKGTPE 109 (357)
Q Consensus 40 ~~~~~~~~l~~A~~~G-in~~Dt---A~~-----Yg~g~sE~~lG~al~~~~-R~~~~I~tK~~~~~~~~~~~~~~~~~~ 109 (357)
+.++..++.+.+-+.| +..||- .++ |..+.+.+.+-+.++... .-++-|..|+... .+
T Consensus 102 ~~~~~~~~a~~~~~aG~~D~iElN~~cP~~~~gg~~~~~~~~~~~eiv~~vr~~~~~pv~vKl~~~------------~~ 169 (301)
T PRK07259 102 TEEEYAEVAEKLSKAPNVDAIELNISCPNVKHGGMAFGTDPELAYEVVKAVKEVVKVPVIVKLTPN------------VT 169 (301)
T ss_pred CHHHHHHHHHHHhccCCcCEEEEECCCCCCCCCccccccCHHHHHHHHHHHHHhcCCCEEEEcCCC------------ch
Confidence 6788888889998998 999975 111 122345666766666642 1257788898642 11
Q ss_pred HHHHHHHHHHhHhCCCcccEEE-eecC--CCCC--Cccccc--c-C-CCChhHHHHHHHHHHHcCccceEecCCC-CHHH
Q 018374 110 YVRSCCEASLKRLGVDYIDLYY-QHRV--DPSV--PIEDTV--C-D-SLPTSLNIGELKMLVVEGKIKYIGLSEA-SPDT 179 (357)
Q Consensus 110 ~i~~~v~~sL~~Lg~d~iDl~~-lH~p--d~~~--~~~~~~--~-~-~~~~~~~~~aL~~L~~~G~ir~iGvS~~-~~~~ 179 (357)
.+. .+-+.|+..|+|.|++.- ++.. +... +..... + . .....-.++.+.++++.=.+-=||+... +.+.
T Consensus 170 ~~~-~~a~~l~~~G~d~i~~~nt~~g~~~~~~~~~~~~~~~~gg~sg~~~~p~~l~~v~~i~~~~~ipvi~~GGI~~~~d 248 (301)
T PRK07259 170 DIV-EIAKAAEEAGADGLSLINTLKGMAIDIKTRKPILANVTGGLSGPAIKPIALRMVYQVYQAVDIPIIGMGGISSAED 248 (301)
T ss_pred hHH-HHHHHHHHcCCCEEEEEccccccccccccCceeecCCcCccCCcCcccccHHHHHHHHHhCCCCEEEECCCCCHHH
Confidence 222 333457778877766531 1211 1100 000000 0 0 0001114677777777656888898885 8888
Q ss_pred HHHHhccCCceEEeccccccc-cc----hhhhHHHHHHHhCCc
Q 018374 180 IRRAHAVHPITAVQMEWSLLT-RD----IEEEIIPLCRELGIG 217 (357)
Q Consensus 180 l~~~~~~~~~~~~q~~~n~~~-~~----~~~~~~~~~~~~gi~ 217 (357)
..+++... .+.+|+-=-++. +. ...++-.++.++|..
T Consensus 249 a~~~l~aG-Ad~V~igr~ll~~P~~~~~i~~~l~~~~~~~g~~ 290 (301)
T PRK07259 249 AIEFIMAG-ASAVQVGTANFYDPYAFPKIIEGLEAYLDKYGIK 290 (301)
T ss_pred HHHHHHcC-CCceeEcHHHhcCcHHHHHHHHHHHHHHHHcCCC
Confidence 88888754 688876333332 21 124666777777653
No 97
>cd01965 Nitrogenase_MoFe_beta_like Nitrogenase_MoFe_beta_like: Nitrogenase MoFe protein, beta subunit_like. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen (N2) to ammonia. This group contains the beta subunits of component 1 of the three known genetically distinct types of nitrogenase systems: a molybdenum-dependent nitrogenase (Mo-nitrogenase), a vanadium-dependent nitrogenase (V-nitrogenase), and an iron-only nitrogenase (Fe-nitrogenase). These nitrogenase systems consist of component 1 (MoFe protein, VFe protein or, FeFe protein respectively) and, component 2 (Fe protein). The most widespread and best characterized of these systems is the Mo-nitrogenase. MoFe is an alpha2beta2 tetramer, the alternative nitrogenases are alpha2beta2delta2 hexamers having alpha and beta subunits similar to the alpha and beta subunits of MoFe. For MoFe, each alphabeta pair contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (Fe
Probab=46.86 E-value=2.9e+02 Score=27.05 Aligned_cols=113 Identities=12% Similarity=0.062 Sum_probs=59.7
Q ss_pred cCcCCCchHHHHHHHHhcC----CCCCeEEEeeeeeccCCCcccccCCCHHHHHHHHHHHHhHhC-CCcccEEEeecCCC
Q 018374 63 DVYGAHANEVLVGKVLKQL----PRKKIQLASKFGVVSMAPTSVIVKGTPEYVRSCCEASLKRLG-VDYIDLYYQHRVDP 137 (357)
Q Consensus 63 ~~Yg~g~sE~~lG~al~~~----~R~~~~I~tK~~~~~~~~~~~~~~~~~~~i~~~v~~sL~~Lg-~d~iDl~~lH~pd~ 137 (357)
..|| .|+-|-+++++. +.+-++|.|-+...--+ +.+..-+++.-++.. -.-+.++.+|.|+.
T Consensus 61 ~V~G---g~~~L~~~i~~~~~~~~p~~I~v~~tC~~~liG----------dDi~~v~~~~~~~~~~~~~~~vi~v~tpgf 127 (428)
T cd01965 61 AVFG---GEDNLIEALKNLLSRYKPDVIGVLTTCLTETIG----------DDVAGFIKEFRAEGPEPADFPVVYASTPSF 127 (428)
T ss_pred eeEC---cHHHHHHHHHHHHHhcCCCEEEEECCcchhhcC----------CCHHHHHHHHHhhccCCCCCeEEEeeCCCC
Confidence 5566 467777887764 33446677766443211 122333332222211 01356788888876
Q ss_pred CCCccccccCCCChhHHHHHHHHH-------HHcCccceEecCCC---CHHHHHHHhccCCceEEec
Q 018374 138 SVPIEDTVCDSLPTSLNIGELKML-------VVEGKIKYIGLSEA---SPDTIRRAHAVHPITAVQM 194 (357)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~aL~~L-------~~~G~ir~iGvS~~---~~~~l~~~~~~~~~~~~q~ 194 (357)
...... .+..++++|-+. ++.++|--||-++. +.++++++++...+.++.+
T Consensus 128 ~g~~~~------G~~~a~~al~~~~~~~~~~~~~~~VNlig~~~~~~~d~~el~~lL~~~Gl~v~~~ 188 (428)
T cd01965 128 KGSHET------GYDNAVKAIIEQLAKPSEVKKNGKVNLLPGFPLTPGDVREIKRILEAFGLEPIIL 188 (428)
T ss_pred CCcHHH------HHHHHHHHHHHHHhcccCCCCCCeEEEECCCCCCccCHHHHHHHHHHcCCCEEEe
Confidence 532211 122334444432 23456777776553 4678888888777666543
No 98
>cd03314 MAL Methylaspartate ammonia lyase (3-methylaspartase, MAL) is a homodimeric enzyme, catalyzing the magnesium-dependent reversible alpha,beta-elimination of ammonia from L-threo-(2S,3S)-3-methylaspartic acid to mesaconic acid. This reaction is part of the main catabolic pathway for glutamate. MAL belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=46.58 E-value=2.1e+02 Score=27.65 Aligned_cols=69 Identities=20% Similarity=0.173 Sum_probs=51.8
Q ss_pred HHHHHHHHHc------CccceEecCCCCHHHHHHHhccCCceEEecccccccc-chhhhHHHHHHHhCCceeeccc
Q 018374 155 IGELKMLVVE------GKIKYIGLSEASPDTIRRAHAVHPITAVQMEWSLLTR-DIEEEIIPLCRELGIGIVPYSP 223 (357)
Q Consensus 155 ~~aL~~L~~~------G~ir~iGvS~~~~~~l~~~~~~~~~~~~q~~~n~~~~-~~~~~~~~~~~~~gi~v~a~sp 223 (357)
++.+.+|++. +.=-..|=+.++.+.+.++++..-.+++|+..+-.-- ....++.++|+.+||.++..+.
T Consensus 245 ~~~~a~Lr~~~~~~~~~iPIa~dEs~~t~~d~~~li~~~a~div~~kl~k~GGIt~a~kia~lA~a~Gi~~~~h~~ 320 (369)
T cd03314 245 IERMAALRAELDRRGVGVRIVADEWCNTLEDIRDFADAGAAHMVQIKTPDLGGIDNTIDAVLYCKEHGVGAYLGGS 320 (369)
T ss_pred HHHHHHHHHHhhcCCCCceEEecCCcCCHHHHHHHHHhCCCCEEEecchhcCCHHHHHHHHHHHHHcCCcEEEeCC
Confidence 6778888776 3333455566889999999998888999987776432 1236889999999999998654
No 99
>COG2069 CdhD CO dehydrogenase/acetyl-CoA synthase delta subunit (corrinoid Fe-S protein) [Energy production and conversion]
Probab=46.27 E-value=2.5e+02 Score=26.21 Aligned_cols=99 Identities=19% Similarity=0.270 Sum_probs=68.1
Q ss_pred HHHhHhCCCcccEEEeecCCCCCCccccccCCCChhHHHHHHHHHHHcCccc-eEecCCC---CHHHHHHHhccCCc-eE
Q 018374 117 ASLKRLGVDYIDLYYQHRVDPSVPIEDTVCDSLPTSLNIGELKMLVVEGKIK-YIGLSEA---SPDTIRRAHAVHPI-TA 191 (357)
Q Consensus 117 ~sL~~Lg~d~iDl~~lH~pd~~~~~~~~~~~~~~~~~~~~aL~~L~~~G~ir-~iGvS~~---~~~~l~~~~~~~~~-~~ 191 (357)
...++.| .|++-+|-...+..+.++ +-.++.+.|+++.+.=+|- -||=|+. +++.++++.+...= .+
T Consensus 158 k~Vk~fg---admvTiHlIsTdPki~D~-----p~~EAak~lEdvLqAVdvPiiiGGSGnpeKDpeVlekaAEvaEGeRc 229 (403)
T COG2069 158 KCVKKFG---ADMVTIHLISTDPKIKDT-----PAKEAAKTLEDVLQAVDVPIIIGGSGNPEKDPEVLEKAAEVAEGERC 229 (403)
T ss_pred HHHHHhC---CceEEEEeecCCccccCC-----CHHHHHHHHHHHHHhcCcCEEecCCCCCccCHHHHHHHHHhhcCceE
Confidence 3445666 688999988665555444 4567799999999887775 4566763 67888888775432 23
Q ss_pred EeccccccccchhhhHHHHHHHhCCceeecccCc
Q 018374 192 VQMEWSLLTRDIEEEIIPLCRELGIGIVPYSPLG 225 (357)
Q Consensus 192 ~q~~~n~~~~~~~~~~~~~~~~~gi~v~a~spl~ 225 (357)
..-+.|+ +.+ ...+.+.+.++|=.|++|+++.
T Consensus 230 lLaSanl-dlD-y~~ia~AA~ky~H~VLswt~~D 261 (403)
T COG2069 230 LLASANL-DLD-YERIAEAALKYDHVVLSWTQMD 261 (403)
T ss_pred Eeecccc-ccC-HHHHHHHHHhcCceEEEeeccC
Confidence 3333443 222 2578899999999999998885
No 100
>PLN02428 lipoic acid synthase
Probab=46.25 E-value=2.8e+02 Score=26.62 Aligned_cols=168 Identities=13% Similarity=0.195 Sum_probs=88.5
Q ss_pred CCHHHHHHHHHHHHHcCCCeEeCc----cCcCCCchHHHHHHHHhcCCC--CCeEEEeeeeeccCCCcccccCCCHHHHH
Q 018374 39 VSEEDGISIIKHAFNKGITFFDTA----DVYGAHANEVLVGKVLKQLPR--KKIQLASKFGVVSMAPTSVIVKGTPEYVR 112 (357)
Q Consensus 39 ~~~~~~~~~l~~A~~~Gin~~DtA----~~Yg~g~sE~~lG~al~~~~R--~~~~I~tK~~~~~~~~~~~~~~~~~~~i~ 112 (357)
.+.++..++.+.+.+.|++++=-. +.|.++..+ .+-+.++...+ ..+.|..=. +.. ..+
T Consensus 130 ~d~~Ep~~vA~~v~~~Glk~vvltSg~rddl~D~ga~-~~~elir~Ir~~~P~i~Ie~L~-pdf--------~~d----- 194 (349)
T PLN02428 130 PDPDEPENVAEAIASWGVDYVVLTSVDRDDLPDGGSG-HFAETVRRLKQLKPEILVEALV-PDF--------RGD----- 194 (349)
T ss_pred CChhhHHHHHHHHHHcCCCEEEEEEcCCCCCCcccHH-HHHHHHHHHHHhCCCcEEEEeC-ccc--------cCC-----
Confidence 356677788888889999876322 134443343 34444544311 123222211 100 011
Q ss_pred HHHHHHHhHhCCCcccEEEeecCCCCCCcccccc-CCCChhHHHHHHHHHHHc--Cccc----eEecCCCCHHHHHHHhc
Q 018374 113 SCCEASLKRLGVDYIDLYYQHRVDPSVPIEDTVC-DSLPTSLNIGELKMLVVE--GKIK----YIGLSEASPDTIRRAHA 185 (357)
Q Consensus 113 ~~v~~sL~~Lg~d~iDl~~lH~pd~~~~~~~~~~-~~~~~~~~~~aL~~L~~~--G~ir----~iGvS~~~~~~l~~~~~ 185 (357)
++.|++|.-.-+|.+. |+++....+..... ....+...++.|+.+++. |..- =+|+ +-+.+++.+.+.
T Consensus 195 ---~elL~~L~eAG~d~i~-hnlETv~rL~~~Ir~~~~sye~~Le~L~~ak~~~pGi~tkSg~MvGL-GET~Edv~e~l~ 269 (349)
T PLN02428 195 ---LGAVETVATSGLDVFA-HNIETVERLQRIVRDPRAGYKQSLDVLKHAKESKPGLLTKTSIMLGL-GETDEEVVQTME 269 (349)
T ss_pred ---HHHHHHHHHcCCCEEc-cCccCcHHHHHHhcCCCCCHHHHHHHHHHHHHhCCCCeEEEeEEEec-CCCHHHHHHHHH
Confidence 3344444333466643 77654222211112 233566679999999987 7653 2466 456666655544
Q ss_pred ---cCCceEEec-cc----------ccccc-chhhhHHHHHHHhCCceeecccCcc
Q 018374 186 ---VHPITAVQM-EW----------SLLTR-DIEEEIIPLCRELGIGIVPYSPLGR 226 (357)
Q Consensus 186 ---~~~~~~~q~-~~----------n~~~~-~~~~~~~~~~~~~gi~v~a~spl~~ 226 (357)
...++++.+ +| +-+.. .....+-+++.+.|...++.+||-.
T Consensus 270 ~Lrelgvd~vtigqyL~Ps~~h~~v~~~v~p~~f~~~~~~~~~~gf~~v~sgp~vr 325 (349)
T PLN02428 270 DLRAAGVDVVTFGQYLRPTKRHLPVKEYVTPEKFEFWREYGEEMGFRYVASGPLVR 325 (349)
T ss_pred HHHHcCCCEEeeccccCCCcceeeeecccCHHHHHHHHHHHHHcCCceEEecCccc
Confidence 345554443 33 11111 1125677888888999999999863
No 101
>PF00697 PRAI: N-(5'phosphoribosyl)anthranilate (PRA) isomerase; InterPro: IPR001240 Indole-3-glycerol phosphate synthase (IGPS) (see IPR001468 from INTERPRO) catalyzes the fourth step in the biosynthesis of tryptophan, the ring closure of 1-(2-carboxy-phenylamino)-1-deoxyribulose into indol-3-glycerol-phosphate. In some bacteria, IGPS is a single chain enzyme. In others, such as Escherichia coli, it is the N-terminal domain of a bifunctional enzyme that also catalyzes N-(5-phosphoribosyl)anthranilate isomerase (PRAI) activity, the third step of tryptophan biosynthesis. In fungi, IGPS is the central domain of a trifunctional enzyme that contains a PRAI C-terminal domain and a glutamine amidotransferase (GATase) N-terminal domain (see IPR000991 from INTERPRO). Phosphoribosylanthranilate isomerase (PRAI) is monomeric and labile in most mesophilic microorganisms, but dimeric and stable in the hyperthermophile Thermotoga maritima (tPRAI) []. The comparison to the known 2.0 A structure of PRAI from Escherichia coli (ePRAI) shows that tPRAI has the complete TIM- or (beta alp ha)8-barrel fold, whereas helix alpha5 in ePRAI is replaced by a loop. The subunits of tPRAI associate via the N-terminal faces of their central beta-barrels. Two long, symmetry-related loops that protrude reciprocally into cavities of the other subunit provide for multiple hydrophobic interactions. Moreover, the side chains of the N-terminal methionines and the C-terminal leucines of both subunits are immobilized in a hydrophobic cluster, and the number of salt bridges is increased in tPRAI. These features appear to be mainly responsible for the high thermostability of tPRAI []. ; GO: 0004640 phosphoribosylanthranilate isomerase activity, 0006568 tryptophan metabolic process; PDB: 1V5X_A 1PII_A 1JCM_P 2KZH_A 1LBM_A 1DL3_A 1NSJ_A.
Probab=45.88 E-value=59 Score=28.20 Aligned_cols=82 Identities=22% Similarity=0.273 Sum_probs=50.9
Q ss_pred HHhHhCCCcccEEEeecCCCCCCccccccCCCChhHHHHHHHHHHHcCccceEecCC-CCHHHHHHHhccCCceEEeccc
Q 018374 118 SLKRLGVDYIDLYYQHRVDPSVPIEDTVCDSLPTSLNIGELKMLVVEGKIKYIGLSE-ASPDTIRRAHAVHPITAVQMEW 196 (357)
Q Consensus 118 sL~~Lg~d~iDl~~lH~pd~~~~~~~~~~~~~~~~~~~~aL~~L~~~G~ir~iGvS~-~~~~~l~~~~~~~~~~~~q~~~ 196 (357)
.+..+|+||+-+.+ +|.... .-. .+...++.+.-..+.+||.. .+.+.+.+.+....++++|++-
T Consensus 14 ~~~~~g~d~~Gfi~--~~~S~R--~v~----------~~~a~~l~~~~~~~~VgVf~~~~~~~I~~~~~~~~ld~vQLHG 79 (197)
T PF00697_consen 14 LAAELGADYLGFIF--YPKSPR--YVS----------PDQARELVSAVPPKIVGVFVNQSPEEILEIVEELGLDVVQLHG 79 (197)
T ss_dssp HHHHHTSSEEEEE----TTCTT--B------------HHHHHHHHCCSSSSEEEEESSS-HHHHHHHHHHCTESEEEE-S
T ss_pred HHHHcCCCEEeeec--CCCCCC--ccC----------HHHHHHHHHhcCCCEEEEEcCCCHHHHHHHHHHcCCCEEEECC
Confidence 45678999988864 443222 222 56667777666655899865 5888899999999999999875
Q ss_pred cccccchhhhHHHHHHHhCCcee
Q 018374 197 SLLTRDIEEEIIPLCRELGIGIV 219 (357)
Q Consensus 197 n~~~~~~~~~~~~~~~~~gi~v~ 219 (357)
+- ..++....+ .++.++
T Consensus 80 ~e-----~~e~~~~l~-~~~~vi 96 (197)
T PF00697_consen 80 DE-----SPEYIKLLR-AGLPVI 96 (197)
T ss_dssp GG------HHHHHHHH-TTSEEE
T ss_pred CC-----CHHHHHHhh-cCceEE
Confidence 55 124444444 345544
No 102
>PRK00077 eno enolase; Provisional
Probab=45.88 E-value=2.8e+02 Score=27.32 Aligned_cols=96 Identities=10% Similarity=0.075 Sum_probs=65.1
Q ss_pred CCHHHHHHHHHHHHhHhCCCcccEEEeecCCCCCCccccccCCCChhHHHHHHHHHHHcC--ccceEecCC--CCHHHHH
Q 018374 106 GTPEYVRSCCEASLKRLGVDYIDLYYQHRVDPSVPIEDTVCDSLPTSLNIGELKMLVVEG--KIKYIGLSE--ASPDTIR 181 (357)
Q Consensus 106 ~~~~~i~~~v~~sL~~Lg~d~iDl~~lH~pd~~~~~~~~~~~~~~~~~~~~aL~~L~~~G--~ir~iGvS~--~~~~~l~ 181 (357)
++++...+.+.+.++.+ ++++|..|-+.. . |+.+.+|.++- ++.-+|=-. .+++.++
T Consensus 261 ~s~~e~~~~~~~l~e~y-----~i~~iEdPl~~~----D----------~~g~~~L~~~~~~~ipI~gdE~~~t~~~~~~ 321 (425)
T PRK00077 261 LTSEEMIDYLAELVDKY-----PIVSIEDGLDEN----D----------WEGWKLLTEKLGDKVQLVGDDLFVTNTKRLK 321 (425)
T ss_pred CCHHHHHHHHHHHHhhC-----CcEEEEcCCCCc----c----------HHHHHHHHHhcCCCCeEEcCCCccCCHHHHH
Confidence 46666666666665554 577777774322 2 77778887764 455433332 3699999
Q ss_pred HHhccCCceEEecccccccc-chhhhHHHHHHHhCCceee
Q 018374 182 RAHAVHPITAVQMEWSLLTR-DIEEEIIPLCRELGIGIVP 220 (357)
Q Consensus 182 ~~~~~~~~~~~q~~~n~~~~-~~~~~~~~~~~~~gi~v~a 220 (357)
.+++....+++|+..|-.-- ....++..+|+.+|+.++.
T Consensus 322 ~~i~~~a~d~v~ik~~~~GGitea~~ia~lA~~~gi~~~v 361 (425)
T PRK00077 322 KGIEKGAANSILIKVNQIGTLTETLDAIELAKRAGYTAVV 361 (425)
T ss_pred HHHHhCCCCEEEeCccccCCHHHHHHHHHHHHHcCCeEEE
Confidence 99998888889887775432 2236889999999998665
No 103
>PRK13352 thiamine biosynthesis protein ThiC; Provisional
Probab=45.54 E-value=1.9e+02 Score=28.37 Aligned_cols=142 Identities=14% Similarity=0.151 Sum_probs=86.6
Q ss_pred CHHHHHHHHHHHHHcCCCeE-eCccCcCCCchHHHHHHHH-hcCCCCCeEEEeeeeeccCC-----CcccccCCCHHHHH
Q 018374 40 SEEDGISIIKHAFNKGITFF-DTADVYGAHANEVLVGKVL-KQLPRKKIQLASKFGVVSMA-----PTSVIVKGTPEYVR 112 (357)
Q Consensus 40 ~~~~~~~~l~~A~~~Gin~~-DtA~~Yg~g~sE~~lG~al-~~~~R~~~~I~tK~~~~~~~-----~~~~~~~~~~~~i~ 112 (357)
+.++-.+=++.|++.|-..+ |-|. .| .-..+-+.+ +. ..+-|.|= ..+... ..+...+.+.+.+.
T Consensus 75 d~~~E~~K~~~A~~~GADtiMDLSt-gg---dl~~iR~~il~~---s~vpvGTV-PiYqa~~~~~~k~~~~~~mt~d~~~ 146 (431)
T PRK13352 75 DIEEELEKAKVAVKYGADTIMDLST-GG---DLDEIRRAIIEA---SPVPVGTV-PIYQAAVEAARKYGSVVDMTEDDLF 146 (431)
T ss_pred CHHHHHHHHHHHHHcCCCeEeeccC-CC---CHHHHHHHHHHc---CCCCCcCh-hHHHHHHHHHhcCCChhhCCHHHHH
Confidence 56666677899999998765 5443 33 333333333 32 11212110 000000 00113477888888
Q ss_pred HHHHHHHhHhCCCcccEEEeecCCCCCCccccccCCCChhHHHHHHHHHHHcCccceEecCCCCHHHHHHHhccCCceEE
Q 018374 113 SCCEASLKRLGVDYIDLYYQHRVDPSVPIEDTVCDSLPTSLNIGELKMLVVEGKIKYIGLSEASPDTIRRAHAVHPITAV 192 (357)
Q Consensus 113 ~~v~~sL~~Lg~d~iDl~~lH~pd~~~~~~~~~~~~~~~~~~~~aL~~L~~~G~ir~iGvS~~~~~~l~~~~~~~~~~~~ 192 (357)
+.+++..+ +=+|.+-||.--. .+.++.++++|+ -.|+-+-....+...+....
T Consensus 147 ~~ie~qa~----~GVDfmTiHcGi~-----------------~~~~~~~~~~~R--~~giVSRGGs~~~~WM~~n~---- 199 (431)
T PRK13352 147 DVIEKQAK----DGVDFMTIHCGVT-----------------RETLERLKKSGR--IMGIVSRGGSFLAAWMLHNN---- 199 (431)
T ss_pred HHHHHHHH----hCCCEEEEccchh-----------------HHHHHHHHhcCC--ccCeecCCHHHHHHHHHHcC----
Confidence 88888776 5689999999422 788999999986 56776666665555443322
Q ss_pred eccccccccchhhhHHHHHHHhCCcee
Q 018374 193 QMEWSLLTRDIEEEIIPLCRELGIGIV 219 (357)
Q Consensus 193 q~~~n~~~~~~~~~~~~~~~~~gi~v~ 219 (357)
.-|++...+ .++++.|++++|.+-
T Consensus 200 --~ENPlye~f-D~lLeI~~~yDVtlS 223 (431)
T PRK13352 200 --KENPLYEHF-DYLLEILKEYDVTLS 223 (431)
T ss_pred --CcCchHHHH-HHHHHHHHHhCeeee
Confidence 236666543 589999999999873
No 104
>COG0502 BioB Biotin synthase and related enzymes [Coenzyme metabolism]
Probab=45.50 E-value=1.5e+02 Score=28.21 Aligned_cols=144 Identities=18% Similarity=0.205 Sum_probs=82.0
Q ss_pred CCHHHHHHHHHHHHHcC-CCeEeCccCcCCCchHHHHHHHHhcCC-CCCeEEEeeeeeccCCCcccccCCCHHHHHHHHH
Q 018374 39 VSEEDGISIIKHAFNKG-ITFFDTADVYGAHANEVLVGKVLKQLP-RKKIQLASKFGVVSMAPTSVIVKGTPEYVRSCCE 116 (357)
Q Consensus 39 ~~~~~~~~~l~~A~~~G-in~~DtA~~Yg~g~sE~~lG~al~~~~-R~~~~I~tK~~~~~~~~~~~~~~~~~~~i~~~v~ 116 (357)
++.++..+.-+.|-+.| .+|...|..++.|+.-..+-++++... --.+-++--+|- ++.+. -
T Consensus 84 ~~~eeIle~Ak~ak~~Ga~r~c~~aagr~~~~~~~~i~~~v~~Vk~~~~le~c~slG~-----------l~~eq-----~ 147 (335)
T COG0502 84 MEVEEILEAAKKAKAAGATRFCMGAAGRGPGRDMEEVVEAIKAVKEELGLEVCASLGM-----------LTEEQ-----A 147 (335)
T ss_pred CCHHHHHHHHHHHHHcCCceEEEEEeccCCCccHHHHHHHHHHHHHhcCcHHhhccCC-----------CCHHH-----H
Confidence 57778888888888999 889999988874444455555555421 112333333331 12222 2
Q ss_pred HHHhHhCCCcccEEEeecCCCCCCccccccCCCChhHHHHHHHHHHHcCccce----EecCCCCHHHHHHHhccCCce-E
Q 018374 117 ASLKRLGVDYIDLYYQHRVDPSVPIEDTVCDSLPTSLNIGELKMLVVEGKIKY----IGLSEASPDTIRRAHAVHPIT-A 191 (357)
Q Consensus 117 ~sL~~Lg~d~iDl~~lH~pd~~~~~~~~~~~~~~~~~~~~aL~~L~~~G~ir~----iGvS~~~~~~l~~~~~~~~~~-~ 191 (357)
+-|..-|+|+ +-|+.+.....-+.......+.+-++.|+.+++.|.=-. +|+..-..++++-+....... +
T Consensus 148 ~~L~~aGvd~----ynhNLeTs~~~y~~I~tt~t~edR~~tl~~vk~~Gi~vcsGgI~GlGEs~eDri~~l~~L~~l~~p 223 (335)
T COG0502 148 EKLADAGVDR----YNHNLETSPEFYENIITTRTYEDRLNTLENVREAGIEVCSGGIVGLGETVEDRAELLLELANLPTP 223 (335)
T ss_pred HHHHHcChhh----eecccccCHHHHcccCCCCCHHHHHHHHHHHHHcCCccccceEecCCCCHHHHHHHHHHHHhCCCC
Confidence 3455667665 457665532222222334566667999999999987443 345554444444444332222 4
Q ss_pred Eeccccccccc
Q 018374 192 VQMEWSLLTRD 202 (357)
Q Consensus 192 ~q~~~n~~~~~ 202 (357)
-.+++|.+++.
T Consensus 224 dsVPIn~l~P~ 234 (335)
T COG0502 224 DSVPINFLNPI 234 (335)
T ss_pred CeeeeeeecCC
Confidence 55666666653
No 105
>PRK09058 coproporphyrinogen III oxidase; Provisional
Probab=45.43 E-value=92 Score=30.89 Aligned_cols=28 Identities=32% Similarity=0.368 Sum_probs=21.7
Q ss_pred CCHHHHHHHHHHHHhHhCCCcccEEEeec
Q 018374 106 GTPEYVRSCCEASLKRLGVDYIDLYYQHR 134 (357)
Q Consensus 106 ~~~~~i~~~v~~sL~~Lg~d~iDl~~lH~ 134 (357)
-+.+.+++.++..++ |+.++|++|.+.-
T Consensus 227 qT~e~~~~~l~~~~~-l~~~~is~y~L~~ 254 (449)
T PRK09058 227 QTPEIWQQDLAIVRD-LGLDGVDLYALNL 254 (449)
T ss_pred CCHHHHHHHHHHHHh-cCCCEEEEecccc
Confidence 377888888877664 8999999997753
No 106
>PRK13347 coproporphyrinogen III oxidase; Provisional
Probab=44.90 E-value=62 Score=32.09 Aligned_cols=122 Identities=16% Similarity=0.165 Sum_probs=63.9
Q ss_pred HHHHHHHHHcCCCeEeCccC---------cCCCchHHHHHHHHhcCCCCC---eEEEeeeeeccCCCcccccCCCHHHHH
Q 018374 45 ISIIKHAFNKGITFFDTADV---------YGAHANEVLVGKVLKQLPRKK---IQLASKFGVVSMAPTSVIVKGTPEYVR 112 (357)
Q Consensus 45 ~~~l~~A~~~Gin~~DtA~~---------Yg~g~sE~~lG~al~~~~R~~---~~I~tK~~~~~~~~~~~~~~~~~~~i~ 112 (357)
.+.++...+.|+|.+.-+-. .+.+.+.+.+-++++...... +-+.-=+|.. ..+.+.+.
T Consensus 152 ~e~l~~L~~~G~~rvsiGvQS~~~~vl~~l~R~~~~~~~~~ai~~lr~~G~~~v~~dli~GlP---------gqt~e~~~ 222 (453)
T PRK13347 152 AEMLQALAALGFNRASFGVQDFDPQVQKAINRIQPEEMVARAVELLRAAGFESINFDLIYGLP---------HQTVESFR 222 (453)
T ss_pred HHHHHHHHHcCCCEEEECCCCCCHHHHHHhCCCCCHHHHHHHHHHHHhcCCCcEEEeEEEeCC---------CCCHHHHH
Confidence 56666777779998854422 222223333334454422112 2222222322 34788888
Q ss_pred HHHHHHHhHhCCCcccEEEe-ecCCCCC---Cccccc-cC-CCChhHHHHHHHHHHHcCccceEecCCCCH
Q 018374 113 SCCEASLKRLGVDYIDLYYQ-HRVDPSV---PIEDTV-CD-SLPTSLNIGELKMLVVEGKIKYIGLSEASP 177 (357)
Q Consensus 113 ~~v~~sL~~Lg~d~iDl~~l-H~pd~~~---~~~~~~-~~-~~~~~~~~~aL~~L~~~G~ir~iGvS~~~~ 177 (357)
+.++..+ .|+.++|.+|.+ |-|.... ...+.. .. ......-..+.+.|.+.|..+ +|+++|..
T Consensus 223 ~tl~~~~-~l~p~~i~~y~l~~~p~~~~~~~~~~~~~lp~~~~~~~~~~~~~~~L~~~Gy~~-~~~~~far 291 (453)
T PRK13347 223 ETLDKVI-ALSPDRIAVFGYAHVPSRRKNQRLIDEAALPDAEERLRQARAVADRLLAAGYVP-IGLDHFAL 291 (453)
T ss_pred HHHHHHH-hcCCCEEEEeccccccchhhHHhcCCccCCcCHHHHHHHHHHHHHHHHHCCCEE-EeccceeC
Confidence 8888776 699999999876 3332110 000000 00 001111234667788899755 99999854
No 107
>cd07944 DRE_TIM_HOA_like 4-hydroxy-2-oxovalerate aldolase-like, N-terminal catalytic TIM barrel domain. This family of bacterial enzymes is sequence-similar to 4-hydroxy-2-oxovalerate aldolase (HOA) but its exact function is unknown. This family includes the Bacteroides vulgatus Bvu_2661 protein and belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues t
Probab=44.79 E-value=2.5e+02 Score=25.65 Aligned_cols=113 Identities=13% Similarity=0.106 Sum_probs=0.0
Q ss_pred cCCCHHHHHHHHHHHHhHhCCCcccEEEeecCCCCCCccccccCCCChhHHHHHHHHHHH-cCccceEecCCCCHHHHHH
Q 018374 104 VKGTPEYVRSCCEASLKRLGVDYIDLYYQHRVDPSVPIEDTVCDSLPTSLNIGELKMLVV-EGKIKYIGLSEASPDTIRR 182 (357)
Q Consensus 104 ~~~~~~~i~~~v~~sL~~Lg~d~iDl~~lH~pd~~~~~~~~~~~~~~~~~~~~aL~~L~~-~G~ir~iGvS~~~~~~l~~ 182 (357)
+.++.+...+-++. |.++|+++|++-+............. ..-.+.++.+..+.+ +-++..+.-..-.....-.
T Consensus 15 ~~f~~~~~~~ia~~-L~~~GVd~IEvG~~~~~~~~~~~~~~----~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~ 89 (266)
T cd07944 15 WDFGDEFVKAIYRA-LAAAGIDYVEIGYRSSPEKEFKGKSA----FCDDEFLRRLLGDSKGNTKIAVMVDYGNDDIDLLE 89 (266)
T ss_pred ccCCHHHHHHHHHH-HHHCCCCEEEeecCCCCccccCCCcc----CCCHHHHHHHHhhhccCCEEEEEECCCCCCHHHHH
Q ss_pred HhccCCceEEeccccccccchhhhHHHHHHHhCCceeec
Q 018374 183 AHAVHPITAVQMEWSLLTRDIEEEIIPLCRELGIGIVPY 221 (357)
Q Consensus 183 ~~~~~~~~~~q~~~n~~~~~~~~~~~~~~~~~gi~v~a~ 221 (357)
......++.+.+.+..-....-.+.+++++++|+.+...
T Consensus 90 ~a~~~gv~~iri~~~~~~~~~~~~~i~~ak~~G~~v~~~ 128 (266)
T cd07944 90 PASGSVVDMIRVAFHKHEFDEALPLIKAIKEKGYEVFFN 128 (266)
T ss_pred HHhcCCcCEEEEecccccHHHHHHHHHHHHHCCCeEEEE
No 108
>TIGR02026 BchE magnesium-protoporphyrin IX monomethyl ester anaerobic oxidative cyclase. This model respresents the cobalamin-dependent oxidative cyclase responsible for forming the distinctive E-ring of the chlorin ring system under anaerobic conditions. This step is essential in the biosynthesis of both bacteriochlorophyll and chlorophyll under anaerobic conditions (a separate enzyme, AcsF, acts under aerobic conditions). This model identifies two clades of sequences, one from photosynthetic, non-cyanobacterial bacteria and another including Synechocystis and several non-photosynthetic bacteria. The function of the Synechocystis gene is supported by gene clustering with other photosynthetic genes, so the purpose of the gene in the non-photosynthetic bacteria is uncertain. Note that homologs of this gene are not found in plants which rely solely on the aerobic cyclase.
Probab=44.60 E-value=1.3e+02 Score=30.22 Aligned_cols=65 Identities=14% Similarity=0.111 Sum_probs=43.6
Q ss_pred ChhHHHHHHHHHHHcCccce----EecCCCCHHHHHHHhcc---CCceEEeccccccccchhhhHHHHHHHhCC
Q 018374 150 PTSLNIGELKMLVVEGKIKY----IGLSEASPDTIRRAHAV---HPITAVQMEWSLLTRDIEEEIIPLCRELGI 216 (357)
Q Consensus 150 ~~~~~~~aL~~L~~~G~ir~----iGvS~~~~~~l~~~~~~---~~~~~~q~~~n~~~~~~~~~~~~~~~~~gi 216 (357)
......++++.+++.|..-. +|+-+.+.+.+++.++. .+++ ++.++++..-+..++.+.+++.+.
T Consensus 321 t~~~~~~ai~~l~~~Gi~~~~~~I~G~P~et~e~~~~t~~~~~~l~~~--~~~~~~~tP~PGT~l~~~~~~~~~ 392 (497)
T TIGR02026 321 TTSTNKEAIRLLRQHNILSEAQFITGFENETDETFEETYRQLLDWDPD--QANWLMYTPWPFTSLFGELSDRVE 392 (497)
T ss_pred CHHHHHHHHHHHHHCCCcEEEEEEEECCCCCHHHHHHHHHHHHHcCCC--ceEEEEecCCCCcHHHHHHHhhcc
Confidence 44556899999999997443 46667777777665543 2333 444567776666778888887653
No 109
>cd04728 ThiG Thiazole synthase (ThiG) is the tetrameric enzyme that is involved in the formation of the thiazole moiety of thiamin pyrophosphate, an essential ubiquitous cofactor that plays an important role in carbohydrate and amino acid metabolism. ThiG catalyzes the formation of thiazole from 1-deoxy-D-xylulose 5-phosphate (DXP) and dehydroglycine, with the help of the sulfur carrier protein ThiS that carries the sulfur needed for thiazole assembly on its carboxy terminus (ThiS-COSH).
Probab=44.40 E-value=2.5e+02 Score=25.51 Aligned_cols=106 Identities=17% Similarity=0.128 Sum_probs=68.8
Q ss_pred CCCHHHHHHHHHHHHhHhCCCcccEEEeecCCCCCCccccccCCCChhHHHHHHHHHHHcCccceEecCCCCHHHHHHHh
Q 018374 105 KGTPEYVRSCCEASLKRLGVDYIDLYYQHRVDPSVPIEDTVCDSLPTSLNIGELKMLVVEGKIKYIGLSEASPDTIRRAH 184 (357)
Q Consensus 105 ~~~~~~i~~~v~~sL~~Lg~d~iDl~~lH~pd~~~~~~~~~~~~~~~~~~~~aL~~L~~~G~ir~iGvS~~~~~~l~~~~ 184 (357)
.++.+.-.+-.+-..+.+++++|-|=.+..+....+ +..+++++.++|.++|.+- +=+++-++...+++.
T Consensus 72 ~~ta~eAv~~a~lare~~~~~~iKlEVi~d~~~Llp---------d~~~tv~aa~~L~~~Gf~v-lpyc~dd~~~ar~l~ 141 (248)
T cd04728 72 CRTAEEAVRTARLAREALGTDWIKLEVIGDDKTLLP---------DPIETLKAAEILVKEGFTV-LPYCTDDPVLAKRLE 141 (248)
T ss_pred CCCHHHHHHHHHHHHHHhCCCeEEEEEecCcccccc---------CHHHHHHHHHHHHHCCCEE-EEEeCCCHHHHHHHH
Confidence 668888888889999999999988887777654322 2244599999999999865 335666777777776
Q ss_pred ccCCceEEeccccccccc---hhhhHHHHHHH-hCCceeec
Q 018374 185 AVHPITAVQMEWSLLTRD---IEEEIIPLCRE-LGIGIVPY 221 (357)
Q Consensus 185 ~~~~~~~~q~~~n~~~~~---~~~~~~~~~~~-~gi~v~a~ 221 (357)
+..+ ++++.--.+.-.+ ...+++...++ .++.|++-
T Consensus 142 ~~G~-~~vmPlg~pIGsg~Gi~~~~~I~~I~e~~~vpVI~e 181 (248)
T cd04728 142 DAGC-AAVMPLGSPIGSGQGLLNPYNLRIIIERADVPVIVD 181 (248)
T ss_pred HcCC-CEeCCCCcCCCCCCCCCCHHHHHHHHHhCCCcEEEe
Confidence 6533 4443211222111 01356666665 46777764
No 110
>cd02801 DUS_like_FMN Dihydrouridine synthase-like (DUS-like) FMN-binding domain. Members of this family catalyze the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archaea. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. 1VHN, a putative flavin oxidoreductase, has high sequence similarity to DUS. The enzymatic mechanism of 1VHN is not known at the present.
Probab=43.65 E-value=2.2e+02 Score=24.82 Aligned_cols=134 Identities=15% Similarity=0.080 Sum_probs=79.3
Q ss_pred CHHHHHHHHHHHHHcCCCeEeCc----------cCcCCC--chHHHHHHHHhcCCCCC--eEEEeeeeeccCCCcccccC
Q 018374 40 SEEDGISIIKHAFNKGITFFDTA----------DVYGAH--ANEVLVGKVLKQLPRKK--IQLASKFGVVSMAPTSVIVK 105 (357)
Q Consensus 40 ~~~~~~~~l~~A~~~Gin~~DtA----------~~Yg~g--~sE~~lG~al~~~~R~~--~~I~tK~~~~~~~~~~~~~~ 105 (357)
+.++..+..+.+.++|+..||-- +.||.. ..-+.+-+.++.. |+. +-|+.|+.... .
T Consensus 65 ~~~~~~~aa~~~~~aG~d~ieln~g~p~~~~~~~~~G~~l~~~~~~~~eii~~v-~~~~~~~v~vk~r~~~--------~ 135 (231)
T cd02801 65 DPETLAEAAKIVEELGADGIDLNMGCPSPKVTKGGAGAALLKDPELVAEIVRAV-REAVPIPVTVKIRLGW--------D 135 (231)
T ss_pred CHHHHHHHHHHHHhcCCCEEEEeCCCCHHHHhCCCeeehhcCCHHHHHHHHHHH-HHhcCCCEEEEEeecc--------C
Confidence 67888899999999999999843 345531 1234444555442 211 45677764321 1
Q ss_pred CCHHHHHHHHHHHHhHhCCCcccEEEeecCCCCC-Cc-cccccCCCChhHHHHHHHHHHHcCccceEecCCC-CHHHHHH
Q 018374 106 GTPEYVRSCCEASLKRLGVDYIDLYYQHRVDPSV-PI-EDTVCDSLPTSLNIGELKMLVVEGKIKYIGLSEA-SPDTIRR 182 (357)
Q Consensus 106 ~~~~~i~~~v~~sL~~Lg~d~iDl~~lH~pd~~~-~~-~~~~~~~~~~~~~~~aL~~L~~~G~ir~iGvS~~-~~~~l~~ 182 (357)
.. +...+- -+.|+..|+ |.+.+|...... .. ... |+.+..+++.-.+--++..+. +.+.+.+
T Consensus 136 ~~-~~~~~~-~~~l~~~Gv---d~i~v~~~~~~~~~~~~~~----------~~~~~~i~~~~~ipvi~~Ggi~~~~d~~~ 200 (231)
T cd02801 136 DE-EETLEL-AKALEDAGA---SALTVHGRTREQRYSGPAD----------WDYIAEIKEAVSIPVIANGDIFSLEDALR 200 (231)
T ss_pred Cc-hHHHHH-HHHHHHhCC---CEEEECCCCHHHcCCCCCC----------HHHHHHHHhCCCCeEEEeCCCCCHHHHHH
Confidence 11 122222 234555674 566777764321 11 122 778888888777777776664 7888888
Q ss_pred HhccCCceEEecccc
Q 018374 183 AHAVHPITAVQMEWS 197 (357)
Q Consensus 183 ~~~~~~~~~~q~~~n 197 (357)
++.....+.+++---
T Consensus 201 ~l~~~gad~V~igr~ 215 (231)
T cd02801 201 CLEQTGVDGVMIGRG 215 (231)
T ss_pred HHHhcCCCEEEEcHH
Confidence 888767777776433
No 111
>PRK05692 hydroxymethylglutaryl-CoA lyase; Provisional
Probab=43.45 E-value=56 Score=30.29 Aligned_cols=103 Identities=13% Similarity=0.044 Sum_probs=60.2
Q ss_pred CCCHHHHHHHHHHHHhHhCCCcccEEEeecCCCCCCccccccCCCChhHHHHHHHHHHHcCccceEecCCCCHHHHHHHh
Q 018374 105 KGTPEYVRSCCEASLKRLGVDYIDLYYQHRVDPSVPIEDTVCDSLPTSLNIGELKMLVVEGKIKYIGLSEASPDTIRRAH 184 (357)
Q Consensus 105 ~~~~~~i~~~v~~sL~~Lg~d~iDl~~lH~pd~~~~~~~~~~~~~~~~~~~~aL~~L~~~G~ir~iGvS~~~~~~l~~~~ 184 (357)
.++.+...+ +-+.|.++|+++|.+-.+..|.......+. ++.+..+.+...++...+. .+...++.++
T Consensus 22 ~~s~e~k~~-ia~~L~~~Gv~~IEvgsf~~p~~~p~~~d~----------~e~~~~l~~~~~~~~~~l~-~~~~~ie~A~ 89 (287)
T PRK05692 22 FIPTADKIA-LIDRLSAAGLSYIEVASFVSPKWVPQMADA----------AEVMAGIQRRPGVTYAALT-PNLKGLEAAL 89 (287)
T ss_pred CcCHHHHHH-HHHHHHHcCCCEEEeCCCcCcccccccccH----------HHHHHhhhccCCCeEEEEe-cCHHHHHHHH
Confidence 455555444 555699999999999855544322222223 6666666654446655554 4777888877
Q ss_pred ccCCceEEecccccc---------ccch-----hhhHHHHHHHhCCceee
Q 018374 185 AVHPITAVQMEWSLL---------TRDI-----EEEIIPLCRELGIGIVP 220 (357)
Q Consensus 185 ~~~~~~~~q~~~n~~---------~~~~-----~~~~~~~~~~~gi~v~a 220 (357)
+... +.+.+-++.- .... -.+.+++++++|+.+.+
T Consensus 90 ~~g~-~~v~i~~~~s~~~~~~n~~~~~~e~l~~~~~~v~~ak~~g~~v~~ 138 (287)
T PRK05692 90 AAGA-DEVAVFASASEAFSQKNINCSIAESLERFEPVAEAAKQAGVRVRG 138 (287)
T ss_pred HcCC-CEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCEEEE
Confidence 7532 3333322221 1100 14788999999998864
No 112
>TIGR01060 eno phosphopyruvate hydratase. Alternate name: enolase
Probab=42.44 E-value=3.2e+02 Score=26.87 Aligned_cols=96 Identities=10% Similarity=0.078 Sum_probs=62.0
Q ss_pred CCHHHHHHHHHHHHhHhCCCcccEEEeecCCCCCCccccccCCCChhHHHHHHHHHHHcC--ccceEecCC--CCHHHHH
Q 018374 106 GTPEYVRSCCEASLKRLGVDYIDLYYQHRVDPSVPIEDTVCDSLPTSLNIGELKMLVVEG--KIKYIGLSE--ASPDTIR 181 (357)
Q Consensus 106 ~~~~~i~~~v~~sL~~Lg~d~iDl~~lH~pd~~~~~~~~~~~~~~~~~~~~aL~~L~~~G--~ir~iGvS~--~~~~~l~ 181 (357)
++++...+-+++.++. .+++++..|-+. +. |+.+.+|.+.- .+.-+|=-. .+++.++
T Consensus 262 ~s~~eai~~~~~lle~-----~~i~~iEdPl~~----~D----------~~~~~~L~~~~~~~ipI~gDE~~~t~~~~~~ 322 (425)
T TIGR01060 262 LTSEEMIEYYKELVEK-----YPIVSIEDGLSE----ED----------WEGWAELTKELGDKVQIVGDDLFVTNTEILR 322 (425)
T ss_pred cCHHHHHHHHHHHHhc-----CCcEEEEcCCCc----cc----------HHHHHHHHHhcCCCCeEEeCCCcccCHHHHH
Confidence 3455555444444443 356777776432 22 77778887764 555333332 2599999
Q ss_pred HHhccCCceEEecccccccc-chhhhHHHHHHHhCCceee
Q 018374 182 RAHAVHPITAVQMEWSLLTR-DIEEEIIPLCRELGIGIVP 220 (357)
Q Consensus 182 ~~~~~~~~~~~q~~~n~~~~-~~~~~~~~~~~~~gi~v~a 220 (357)
++++....+++|+..|-.-- ....++...|+.+|+.++.
T Consensus 323 ~~i~~~a~d~v~ik~~~iGGItea~~ia~lA~~~Gi~~vv 362 (425)
T TIGR01060 323 EGIEMGVANSILIKPNQIGTLTETLDAVELAKKAGYTAVI 362 (425)
T ss_pred HHHHhCCCCEEEecccccCCHHHHHHHHHHHHHcCCcEEE
Confidence 99988888889887765432 2236788999999999554
No 113
>cd03317 NAAAR N-acylamino acid racemase (NAAAR), an octameric enzyme that catalyzes the racemization of N-acylamino acids. NAAARs act on a broad range of N-acylamino acids rather than amino acids. Enantiopure amino acids are of industrial interest as chiral building blocks for antibiotics, herbicides, and drugs. NAAAR is a member of the enolase superfamily, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=41.63 E-value=3.1e+02 Score=25.93 Aligned_cols=148 Identities=18% Similarity=0.091 Sum_probs=87.5
Q ss_pred HHHHHHHHHHHHcCCCeEeCccCcCCCchHHHHHHHHhcCCCCCeEEEeeeeeccCCCcccccCCCHHHHHHHHHHHHhH
Q 018374 42 EDGISIIKHAFNKGITFFDTADVYGAHANEVLVGKVLKQLPRKKIQLASKFGVVSMAPTSVIVKGTPEYVRSCCEASLKR 121 (357)
Q Consensus 42 ~~~~~~l~~A~~~Gin~~DtA~~Yg~g~sE~~lG~al~~~~R~~~~I~tK~~~~~~~~~~~~~~~~~~~i~~~v~~sL~~ 121 (357)
++..+.+..+.+.|++.|=.=- +.....+.+ +++++.-. ++ ++....+. .++.+... + +++
T Consensus 139 ~~~~~~~~~~~~~Gf~~~KiKv--~~~~d~~~l-~~vr~~~g-~~----~l~lDaN~------~~~~~~a~--~---~~~ 199 (354)
T cd03317 139 EQLLKQIERYLEEGYKRIKLKI--KPGWDVEPL-KAVRERFP-DI----PLMADANS------AYTLADIP--L---LKR 199 (354)
T ss_pred HHHHHHHHHHHHcCCcEEEEec--ChHHHHHHH-HHHHHHCC-CC----eEEEECCC------CCCHHHHH--H---HHH
Confidence 6677888888999999874321 211123333 33444211 22 33322221 23444432 2 334
Q ss_pred hCCCcccEEEeecCCCCCCccccccCCCChhHHHHHHHHHHHcCccc-eEecCCCCHHHHHHHhccCCceEEeccccccc
Q 018374 122 LGVDYIDLYYQHRVDPSVPIEDTVCDSLPTSLNIGELKMLVVEGKIK-YIGLSEASPDTIRRAHAVHPITAVQMEWSLLT 200 (357)
Q Consensus 122 Lg~d~iDl~~lH~pd~~~~~~~~~~~~~~~~~~~~aL~~L~~~G~ir-~iGvS~~~~~~l~~~~~~~~~~~~q~~~n~~~ 200 (357)
| +..++.++..|-+. +. +..+.+++++-.+. +.|=|.++.+.+..+++...++++|+..+..-
T Consensus 200 l--~~~~i~~iEeP~~~----~d----------~~~~~~l~~~~~~pia~dEs~~~~~~~~~~~~~~~~d~~~ik~~~~G 263 (354)
T cd03317 200 L--DEYGLLMIEQPLAA----DD----------LIDHAELQKLLKTPICLDESIQSAEDARKAIELGACKIINIKPGRVG 263 (354)
T ss_pred h--hcCCccEEECCCCh----hH----------HHHHHHHHhhcCCCEEeCCccCCHHHHHHHHHcCCCCEEEecccccC
Confidence 4 22356666665332 12 67777787764433 45556689999999999888899998765543
Q ss_pred c-chhhhHHHHHHHhCCceeecccC
Q 018374 201 R-DIEEEIIPLCRELGIGIVPYSPL 224 (357)
Q Consensus 201 ~-~~~~~~~~~~~~~gi~v~a~spl 224 (357)
- ....++..+|+.+|+.++..+..
T Consensus 264 Git~~~~i~~~A~~~gi~~~~g~~~ 288 (354)
T cd03317 264 GLTEALKIHDLCQEHGIPVWCGGML 288 (354)
T ss_pred CHHHHHHHHHHHHHcCCcEEecCcc
Confidence 2 12368899999999998765444
No 114
>PF01207 Dus: Dihydrouridine synthase (Dus); InterPro: IPR001269 Members of this family catalyse the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archae. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. Dus 1 (P53759 from SWISSPROT) from Saccharomyces cerevisiae (Baker's yeast) acts on pre-tRNA-Phe, while Dus 2 (P53720 from SWISSPROT) acts on pre-tRNA-Tyr and pre-tRNA-Leu. Dus 1 is active as a single subunit, requiring NADPH or NADH, and is stimulated by the presence of FAD []. Some family members may be targeted to the mitochondria and even have a role in mitochondria []. ; GO: 0017150 tRNA dihydrouridine synthase activity, 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing, 0055114 oxidation-reduction process; PDB: 1VHN_A 3B0P_A 3B0V_D 3B0U_Y.
Probab=41.35 E-value=2e+02 Score=26.82 Aligned_cols=134 Identities=16% Similarity=0.117 Sum_probs=77.6
Q ss_pred CHHHHHHHHHHHHHcCCCeEeCc----------cCcCCC--chHHHHHHHHhcC-CCCCeEEEeeeeeccCCCcccccCC
Q 018374 40 SEEDGISIIKHAFNKGITFFDTA----------DVYGAH--ANEVLVGKVLKQL-PRKKIQLASKFGVVSMAPTSVIVKG 106 (357)
Q Consensus 40 ~~~~~~~~l~~A~~~Gin~~DtA----------~~Yg~g--~sE~~lG~al~~~-~R~~~~I~tK~~~~~~~~~~~~~~~ 106 (357)
+.+...++.+.+.+.|+..||-- ..||.+ ..-+.+.+.++.. ..-.+-|+.|+.... +.
T Consensus 64 ~~~~~~~aa~~~~~~~~~~IDlN~GCP~~~v~~~g~Ga~Ll~~p~~~~~iv~~~~~~~~~pvsvKiR~g~--------~~ 135 (309)
T PF01207_consen 64 DPEDLAEAAEIVAELGFDGIDLNMGCPAPKVTKGGAGAALLKDPDLLAEIVKAVRKAVPIPVSVKIRLGW--------DD 135 (309)
T ss_dssp -HHHHHHHHHHHCCTT-SEEEEEE---SHHHHHCT-GGGGGC-HHHHHHHHHHHHHH-SSEEEEEEESEC--------T-
T ss_pred cHHHHHHHHHhhhccCCcEEeccCCCCHHHHhcCCcChhhhcChHHhhHHHHhhhcccccceEEeccccc--------cc
Confidence 77888888888888899999932 334432 2235556665553 112355666665432 11
Q ss_pred CHHHHHHHHHHHHhHhCCCcccEEEeecCCCCCCc--cccccCCCChhHHHHHHHHHHHcCccceEecCC-CCHHHHHHH
Q 018374 107 TPEYVRSCCEASLKRLGVDYIDLYYQHRVDPSVPI--EDTVCDSLPTSLNIGELKMLVVEGKIKYIGLSE-ASPDTIRRA 183 (357)
Q Consensus 107 ~~~~i~~~v~~sL~~Lg~d~iDl~~lH~pd~~~~~--~~~~~~~~~~~~~~~aL~~L~~~G~ir~iGvS~-~~~~~l~~~ 183 (357)
+.+...+ +-+.|+..| +|.+.||.-...... ... |+.+.++++.=.|--||=.+ ++.+..++.
T Consensus 136 ~~~~~~~-~~~~l~~~G---~~~i~vH~Rt~~q~~~~~a~----------w~~i~~i~~~~~ipvi~NGdI~s~~d~~~~ 201 (309)
T PF01207_consen 136 SPEETIE-FARILEDAG---VSAITVHGRTRKQRYKGPAD----------WEAIAEIKEALPIPVIANGDIFSPEDAERM 201 (309)
T ss_dssp -CHHHHH-HHHHHHHTT-----EEEEECS-TTCCCTS-------------HHHHHHCHHC-TSEEEEESS--SHHHHHHH
T ss_pred chhHHHH-HHHHhhhcc---cceEEEecCchhhcCCcccc----------hHHHHHHhhcccceeEEcCccCCHHHHHHH
Confidence 2333333 444666777 789999997544332 223 88899998887776666655 578888888
Q ss_pred hccCCceEEecc
Q 018374 184 HAVHPITAVQME 195 (357)
Q Consensus 184 ~~~~~~~~~q~~ 195 (357)
++....+-+++-
T Consensus 202 ~~~tg~dgvMig 213 (309)
T PF01207_consen 202 LEQTGADGVMIG 213 (309)
T ss_dssp CCCH-SSEEEES
T ss_pred HHhcCCcEEEEc
Confidence 887677777663
No 115
>PLN00191 enolase
Probab=41.31 E-value=2.2e+02 Score=28.37 Aligned_cols=97 Identities=9% Similarity=0.109 Sum_probs=67.1
Q ss_pred CCHHHHHHHHHHHHhHhCCCcccEEEeecCCCCCCccccccCCCChhHHHHHHHHHHHcCccceEecC--CCCHHHHHHH
Q 018374 106 GTPEYVRSCCEASLKRLGVDYIDLYYQHRVDPSVPIEDTVCDSLPTSLNIGELKMLVVEGKIKYIGLS--EASPDTIRRA 183 (357)
Q Consensus 106 ~~~~~i~~~v~~sL~~Lg~d~iDl~~lH~pd~~~~~~~~~~~~~~~~~~~~aL~~L~~~G~ir~iGvS--~~~~~~l~~~ 183 (357)
.+++...+-+.+.+++ .++.+|..|-+. +. |+.+.+|.++.++.-+|=- ..+++.++++
T Consensus 295 ~s~~e~i~~~~~L~~~-----y~I~~IEDPl~~----~D----------~eg~~~Lt~~~~ipIvgDE~~vtn~~~l~~~ 355 (457)
T PLN00191 295 KSGDELIDLYKEFVSD-----YPIVSIEDPFDQ----DD----------WEHWAKLTSLEDVQIVGDDLLVTNPKRVAKA 355 (457)
T ss_pred cCHHHHHHHHHHHhhc-----CCcEEEECCCCc----cc----------HHHHHHHHccCCCcEEccCcccCCHHHHHHH
Confidence 3555555555544433 357777777432 22 8888889988888766622 2568999999
Q ss_pred hccCCceEEecccccccc-chhhhHHHHHHHhCCceeec
Q 018374 184 HAVHPITAVQMEWSLLTR-DIEEEIIPLCRELGIGIVPY 221 (357)
Q Consensus 184 ~~~~~~~~~q~~~n~~~~-~~~~~~~~~~~~~gi~v~a~ 221 (357)
++....+++++..|-.-- ....+..++|+.+|+.++..
T Consensus 356 I~~~aad~i~iKl~qiGGITea~~~a~lA~~~G~~~~is 394 (457)
T PLN00191 356 IQEKACNALLLKVNQIGTVTESIEAVKMSKAAGWGVMTS 394 (457)
T ss_pred HHhCCCCEEEecccccCCHHHHHHHHHHHHHCCCEEEeC
Confidence 998888888887775432 22367899999999999763
No 116
>cd07948 DRE_TIM_HCS Saccharomyces cerevisiae homocitrate synthase and related proteins, catalytic TIM barrel domain. Homocitrate synthase (HCS) catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate, the first step in the lysine biosynthesis pathway. This family includes the Yarrowia lipolytica LYS1 protein as well as the Saccharomyces cerevisiae LYS20 and LYS21 proteins. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. Th
Probab=40.29 E-value=2.9e+02 Score=25.17 Aligned_cols=25 Identities=24% Similarity=0.355 Sum_probs=22.4
Q ss_pred CCHHHHHHHHHHHHHcCCCeEeCcc
Q 018374 39 VSEEDGISIIKHAFNKGITFFDTAD 63 (357)
Q Consensus 39 ~~~~~~~~~l~~A~~~Gin~~DtA~ 63 (357)
.+.++..++++...+.||..|+.+.
T Consensus 19 ~s~~~k~~i~~~L~~~Gv~~IEvG~ 43 (262)
T cd07948 19 FDTEDKIEIAKALDAFGVDYIELTS 43 (262)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEEC
Confidence 4789999999999999999999874
No 117
>PRK13803 bifunctional phosphoribosylanthranilate isomerase/tryptophan synthase subunit beta; Provisional
Probab=40.23 E-value=1.1e+02 Score=31.82 Aligned_cols=88 Identities=13% Similarity=0.065 Sum_probs=51.3
Q ss_pred hHhCCCcccEEEeecCCCCCCccccccCCCChhHHHHHHHHHHHcCccceEecC-CCCHHHHHHHhccCCceEEeccccc
Q 018374 120 KRLGVDYIDLYYQHRVDPSVPIEDTVCDSLPTSLNIGELKMLVVEGKIKYIGLS-EASPDTIRRAHAVHPITAVQMEWSL 198 (357)
Q Consensus 120 ~~Lg~d~iDl~~lH~pd~~~~~~~~~~~~~~~~~~~~aL~~L~~~G~ir~iGvS-~~~~~~l~~~~~~~~~~~~q~~~n~ 198 (357)
..+|+|++-+++..........+.. ...|.+......+..|||- |.+++.+.++.+...++++|++-+.
T Consensus 20 ~~~gaD~iGfIf~~~SpR~V~~~~~----------a~~i~~~l~~~~v~~VgVfv~~~~~~i~~~~~~~~ld~vQLHG~e 89 (610)
T PRK13803 20 VDMLPDFIGFIFYEKSPRFVGNKFL----------APNLEKAIRKAGGRPVGVFVNESAKAMLKFSKKNGIDFVQLHGAE 89 (610)
T ss_pred HHcCCCEEEEEecCCCCCCCCHHHH----------HHHHHHhCCCCCCCEEEEEeCCCHHHHHHHHHhcCCCEEEECCCC
Confidence 4589999998755432222222220 1222222222357789995 6799999999999999999997543
Q ss_pred cccchhhhHHHHHHHhCCcee
Q 018374 199 LTRDIEEEIIPLCRELGIGIV 219 (357)
Q Consensus 199 ~~~~~~~~~~~~~~~~gi~v~ 219 (357)
-.. ..+.+...++.++.++
T Consensus 90 ~~~--~~~~~~~l~~~~~~ii 108 (610)
T PRK13803 90 SKA--EPAYCQRIYKKSIKKI 108 (610)
T ss_pred Ccc--cHHHHHHhhhcCCcEE
Confidence 210 1234444444455554
No 118
>TIGR00676 fadh2 5,10-methylenetetrahydrofolate reductase, prokaryotic form. This protein is an FAD-containing flavoprotein.
Probab=40.11 E-value=2.9e+02 Score=25.20 Aligned_cols=155 Identities=15% Similarity=0.146 Sum_probs=78.8
Q ss_pred HHHHHHHHHHHHcCCCeEeCccCcCCCchHHHHH--HHHhcCCCCCeEEEeeeeeccCCCcccccCCCHHHHHHHHHHHH
Q 018374 42 EDGISIIKHAFNKGITFFDTADVYGAHANEVLVG--KVLKQLPRKKIQLASKFGVVSMAPTSVIVKGTPEYVRSCCEASL 119 (357)
Q Consensus 42 ~~~~~~l~~A~~~Gin~~DtA~~Yg~g~sE~~lG--~al~~~~R~~~~I~tK~~~~~~~~~~~~~~~~~~~i~~~v~~sL 119 (357)
+...+.++..-+.|..+|..++.=+++..+..+. ..|++ ...+-..--+.-. +.++..+...+...
T Consensus 15 ~~l~~~~~~l~~~~pd~isvT~~~~~~~~~~t~~~a~~l~~--~~g~~~i~Hlt~r---------~~n~~~l~~~L~~~- 82 (272)
T TIGR00676 15 ENLWETVDRLSPLDPDFVSVTYGAGGSTRDRTVRIVRRIKK--ETGIPTVPHLTCI---------GATREEIREILREY- 82 (272)
T ss_pred HHHHHHHHHHhcCCCCEEEeccCCCCCcHHHHHHHHHHHHH--hcCCCeeEEeeec---------CCCHHHHHHHHHHH-
Confidence 4455666666677999999987666544444443 33332 1111111111111 34566677776644
Q ss_pred hHhCCCcccEEEeecCCCCCCcc-ccccCCCChhHHHHHHHHHHHc-CccceEecCCCCH---------HHHHHHhc---
Q 018374 120 KRLGVDYIDLYYQHRVDPSVPIE-DTVCDSLPTSLNIGELKMLVVE-GKIKYIGLSEASP---------DTIRRAHA--- 185 (357)
Q Consensus 120 ~~Lg~d~iDl~~lH~pd~~~~~~-~~~~~~~~~~~~~~aL~~L~~~-G~ir~iGvS~~~~---------~~l~~~~~--- 185 (357)
..+|++ +++.|-.. +....+ .. ...+..+.+-++.+++. |. -.||+..++- ..++.+.+
T Consensus 83 ~~~Gi~--nvL~l~GD-~~~~~~~~~---~~~f~~a~~Li~~i~~~~~~-f~ig~a~~Peghp~~~~~~~~~~~L~~K~~ 155 (272)
T TIGR00676 83 RELGIR--HILALRGD-PPKGEGTPT---PGGFNYASELVEFIRNEFGD-FDIGVAAYPEKHPEAPNLEEDIENLKRKVD 155 (272)
T ss_pred HHCCCC--EEEEeCCC-CCCCCCCCC---CCCCCCHHHHHHHHHHhcCC-eeEEEEeCCCCCCCCCCHHHHHHHHHHHHH
Confidence 677743 23334332 221111 11 11223346666666654 43 4788876421 23333322
Q ss_pred -cCCceEEeccccccccchhhhHHHHHHHhCCce
Q 018374 186 -VHPITAVQMEWSLLTRDIEEEIIPLCRELGIGI 218 (357)
Q Consensus 186 -~~~~~~~q~~~n~~~~~~~~~~~~~~~~~gi~v 218 (357)
...+-+-|.-|+.- .-.++++.|++.|+.+
T Consensus 156 aGA~f~iTQ~~fd~~---~~~~~~~~~~~~gi~~ 186 (272)
T TIGR00676 156 AGADYAITQLFFDND---DYYRFVDRCRAAGIDV 186 (272)
T ss_pred cCCCeEeeccccCHH---HHHHHHHHHHHcCCCC
Confidence 24455667666552 2357889999998765
No 119
>TIGR03822 AblA_like_2 lysine-2,3-aminomutase-related protein. Members of this protein form a distinctive clade, homologous to lysine-2,3-aminomutase (of Bacillus, Clostridium, and methanogenic archaea) and likely similar in function. Members of this family are found in Rhodopseudomonas, Caulobacter crescentus, Bradyrhizobium, etc.
Probab=39.37 E-value=3.3e+02 Score=25.58 Aligned_cols=74 Identities=16% Similarity=0.130 Sum_probs=44.4
Q ss_pred HHHHHHHHHcCccceEecCC---------CCHHHHHHHhccCCceEEecccccccc--chhhhHHHHHHHhCCceeeccc
Q 018374 155 IGELKMLVVEGKIKYIGLSE---------ASPDTIRRAHAVHPITAVQMEWSLLTR--DIEEEIIPLCRELGIGIVPYSP 223 (357)
Q Consensus 155 ~~aL~~L~~~G~ir~iGvS~---------~~~~~l~~~~~~~~~~~~q~~~n~~~~--~~~~~~~~~~~~~gi~v~a~sp 223 (357)
.+-++.+++-|.|+.+.+.+ .+.+.++.+.+......+.++.|-... ....+.+..+++.||.+...++
T Consensus 156 ~~ll~~l~~i~~v~~iri~Tr~~v~~p~rit~ell~~L~~~g~~v~i~l~~~h~~el~~~~~~ai~~L~~~Gi~v~~q~v 235 (321)
T TIGR03822 156 GDIMARLAAIDHVKIVRFHTRVPVADPARVTPALIAALKTSGKTVYVALHANHARELTAEARAACARLIDAGIPMVSQSV 235 (321)
T ss_pred HHHHHHHHhCCCccEEEEeCCCcccChhhcCHHHHHHHHHcCCcEEEEecCCChhhcCHHHHHHHHHHHHcCCEEEEEee
Confidence 67778888888776444432 344445555444422234444432111 1124677888899999999999
Q ss_pred Ccccc
Q 018374 224 LGRGL 228 (357)
Q Consensus 224 l~~G~ 228 (357)
+..|.
T Consensus 236 Ll~gv 240 (321)
T TIGR03822 236 LLRGV 240 (321)
T ss_pred EeCCC
Confidence 98763
No 120
>COG0135 TrpF Phosphoribosylanthranilate isomerase [Amino acid transport and metabolism]
Probab=38.91 E-value=1.7e+02 Score=25.79 Aligned_cols=96 Identities=22% Similarity=0.242 Sum_probs=53.5
Q ss_pred CHHHHHHHHHHHHHc-CCCeEeCccCcCCCchHHHHHHHHhcCCCCCeEEEeeeeeccCCCcccccCCCHHHHHHHHHHH
Q 018374 40 SEEDGISIIKHAFNK-GITFFDTADVYGAHANEVLVGKVLKQLPRKKIQLASKFGVVSMAPTSVIVKGTPEYVRSCCEAS 118 (357)
Q Consensus 40 ~~~~~~~~l~~A~~~-Gin~~DtA~~Yg~g~sE~~lG~al~~~~R~~~~I~tK~~~~~~~~~~~~~~~~~~~i~~~v~~s 118 (357)
+.+++..+.+...+. |+=|...++=|= +.+...+..+..+. .++++... +.+.+.|.+ .
T Consensus 11 ~~eda~~a~~~gad~iG~If~~~SpR~V---s~~~a~~i~~~v~~-----~~~VgVf~--------n~~~~~i~~----i 70 (208)
T COG0135 11 RLEDAKAAAKAGADYIGFIFVPKSPRYV---SPEQAREIASAVPK-----VKVVGVFV--------NESIEEILE----I 70 (208)
T ss_pred CHHHHHHHHHcCCCEEEEEEcCCCCCcC---CHHHHHHHHHhCCC-----CCEEEEEC--------CCCHHHHHH----H
Confidence 344455444443333 444555577675 55666665655332 22444432 223444433 3
Q ss_pred HhHhCCCcccEEEeecCCCCCCccccccCCCChhHHHHHHHHHHHc---CccceEecCCC
Q 018374 119 LKRLGVDYIDLYYQHRVDPSVPIEDTVCDSLPTSLNIGELKMLVVE---GKIKYIGLSEA 175 (357)
Q Consensus 119 L~~Lg~d~iDl~~lH~pd~~~~~~~~~~~~~~~~~~~~aL~~L~~~---G~ir~iGvS~~ 175 (357)
++.++ +|++|||...+ .+.+++|++. ..++++.++.-
T Consensus 71 ~~~~~---ld~VQlHG~e~-----------------~~~~~~l~~~~~~~v~kai~v~~~ 110 (208)
T COG0135 71 AEELG---LDAVQLHGDED-----------------PEYIDQLKEELGVPVIKAISVSEE 110 (208)
T ss_pred HHhcC---CCEEEECCCCC-----------------HHHHHHHHhhcCCceEEEEEeCCc
Confidence 44444 89999999633 4555666665 58888988764
No 121
>PRK01221 putative deoxyhypusine synthase; Provisional
Probab=38.62 E-value=1.7e+02 Score=27.53 Aligned_cols=74 Identities=12% Similarity=0.095 Sum_probs=40.0
Q ss_pred CCCCceecCCCCcccccceeccccccCCCCCCCCHHHHHHHHHHHHHcCCCeEeCccCcCCCchHHHHHHHHhcCCCCCe
Q 018374 7 IQAPRVKLGTQGLEVSKLGFGCMGLTGMYNSPVSEEDGISIIKHAFNKGITFFDTADVYGAHANEVLVGKVLKQLPRKKI 86 (357)
Q Consensus 7 ~~m~~~~lg~tg~~vs~lglG~~~~g~~~~~~~~~~~~~~~l~~A~~~Gin~~DtA~~Yg~g~sE~~lG~al~~~~R~~~ 86 (357)
.+.+...+ +.++++..|.=.....|+ +... ...+|.+++...++.+-+.|= .|.+...-.-++..++.+-|+.+
T Consensus 9 ~~V~~~~~-~~~~~~~~lv~~~~~~~g-F~a~-~l~~A~~i~~~ml~d~~~ifL---~~tg~mvs~Glr~ii~~Li~~~~ 82 (312)
T PRK01221 9 EPVEDIRL-DDLTSISDLIEVYRKIGG-FMAG-HIVRASEILKEMISDADLRFL---SFTANLVSTGLRGLIADLIKRGL 82 (312)
T ss_pred CCCCCCCC-CCCCCHHHHHHHhhccCC-cchH-HHHHHHHHHHHHHcCCCeEEE---EecchhHHHHHHHHHHHHHHcCC
Confidence 34555555 466777776533322222 2212 677899999999866544332 12222233446777776644443
No 122
>PRK13796 GTPase YqeH; Provisional
Probab=38.44 E-value=3.7e+02 Score=25.81 Aligned_cols=137 Identities=12% Similarity=0.202 Sum_probs=83.3
Q ss_pred cceeccccccCCCC----CCCCHHHHHHHHHHHHHcC---CCeEeCccCcCCCchHHHHHHHHhcCCCCCeEEEeeeeec
Q 018374 23 KLGFGCMGLTGMYN----SPVSEEDGISIIKHAFNKG---ITFFDTADVYGAHANEVLVGKVLKQLPRKKIQLASKFGVV 95 (357)
Q Consensus 23 ~lglG~~~~g~~~~----~~~~~~~~~~~l~~A~~~G---in~~DtA~~Yg~g~sE~~lG~al~~~~R~~~~I~tK~~~~ 95 (357)
.+|-=|.++-. |+ ..++.++..++++..-+.- +-.+|..+.-+. -...+.+.+. .+.-++|.+|.-..
T Consensus 35 ~~C~RC~~l~h-y~~~~~~~~~~~~~~~~l~~i~~~~~lIv~VVD~~D~~~s--~~~~L~~~~~--~kpviLViNK~DLl 109 (365)
T PRK13796 35 VYCQRCFRLKH-YNEIQDVSLTDDDFLKLLNGIGDSDALVVNVVDIFDFNGS--WIPGLHRFVG--NNPVLLVGNKADLL 109 (365)
T ss_pred eEchhhhhhhc-cCcccCCCCCHHHHHHHHHhhcccCcEEEEEEECccCCCc--hhHHHHHHhC--CCCEEEEEEchhhC
Confidence 35555555432 22 1246677778887777655 456786664431 2333434332 45678899998653
Q ss_pred cCCCcccccCCCHHHHHHHHHHHHhHhCCCcccEEEeecCCCCCCccccccCCCChhHHHHHHHHHHHcCccceEecCCC
Q 018374 96 SMAPTSVIVKGTPEYVRSCCEASLKRLGVDYIDLYYQHRVDPSVPIEDTVCDSLPTSLNIGELKMLVVEGKIKYIGLSEA 175 (357)
Q Consensus 96 ~~~~~~~~~~~~~~~i~~~v~~sL~~Lg~d~iDl~~lH~pd~~~~~~~~~~~~~~~~~~~~aL~~L~~~G~ir~iGvS~~ 175 (357)
.. ....+.+.+.+....+.+|....+++++..-. ...+++. ++.|.+..+.+.+--+|.+|-
T Consensus 110 ~~-------~~~~~~i~~~l~~~~k~~g~~~~~v~~vSAk~-g~gI~eL----------~~~I~~~~~~~~v~vvG~~Nv 171 (365)
T PRK13796 110 PK-------SVKKNKVKNWLRQEAKELGLRPVDVVLISAQK-GHGIDEL----------LEAIEKYREGRDVYVVGVTNV 171 (365)
T ss_pred CC-------ccCHHHHHHHHHHHHHhcCCCcCcEEEEECCC-CCCHHHH----------HHHHHHhcCCCeEEEEcCCCC
Confidence 21 22456677777777777786555777765432 2223444 777777777788999999998
Q ss_pred CHHHHHH
Q 018374 176 SPDTIRR 182 (357)
Q Consensus 176 ~~~~l~~ 182 (357)
....|--
T Consensus 172 GKSTLiN 178 (365)
T PRK13796 172 GKSTLIN 178 (365)
T ss_pred cHHHHHH
Confidence 7665433
No 123
>PRK08208 coproporphyrinogen III oxidase; Validated
Probab=38.44 E-value=2.4e+02 Score=27.70 Aligned_cols=122 Identities=9% Similarity=-0.007 Sum_probs=62.5
Q ss_pred HHHHHHHHHcCCCeEeCccCc---------CCCchHHHHHHHHhcCCCCCe---EEEeeeeeccCCCcccccCCCHHHHH
Q 018374 45 ISIIKHAFNKGITFFDTADVY---------GAHANEVLVGKVLKQLPRKKI---QLASKFGVVSMAPTSVIVKGTPEYVR 112 (357)
Q Consensus 45 ~~~l~~A~~~Gin~~DtA~~Y---------g~g~sE~~lG~al~~~~R~~~---~I~tK~~~~~~~~~~~~~~~~~~~i~ 112 (357)
.+.++...++|+|.+.-+-.= +-+.+...+-++++......+ -+.-=+|.. ..+.+.+.
T Consensus 141 ~e~l~~l~~~G~~rvslGvQS~~~~~L~~l~R~~~~~~~~~ai~~l~~~g~~~i~~dlI~GlP---------~qt~e~~~ 211 (430)
T PRK08208 141 AEKLALLAARGVNRLSIGVQSFHDSELHALHRPQKRADVHQALEWIRAAGFPILNIDLIYGIP---------GQTHASWM 211 (430)
T ss_pred HHHHHHHHHcCCCEEEEecccCCHHHHHHhCCCCCHHHHHHHHHHHHHcCCCeEEEEeecCCC---------CCCHHHHH
Confidence 455666666788888544222 222233333344443322222 122222322 34788888
Q ss_pred HHHHHHHhHhCCCcccEEEeecCCCCCCccccc-cCCCChhHH-HHHHHHHHHcCccceEecCCCCHH
Q 018374 113 SCCEASLKRLGVDYIDLYYQHRVDPSVPIEDTV-CDSLPTSLN-IGELKMLVVEGKIKYIGLSEASPD 178 (357)
Q Consensus 113 ~~v~~sL~~Lg~d~iDl~~lH~pd~~~~~~~~~-~~~~~~~~~-~~aL~~L~~~G~ir~iGvS~~~~~ 178 (357)
+.++..+ .|+.++|.+|.+.-. +.+.+.... .+....... -.+.+.|.+.|. +.+++++|...
T Consensus 212 ~~l~~~~-~l~~~~is~y~L~~~-~~T~l~~~~~~~~~~~~~m~~~~~~~L~~~Gy-~~yei~~far~ 276 (430)
T PRK08208 212 ESLDQAL-VYRPEELFLYPLYVR-PLTGLGRRARAWDDQRLSLYRLARDLLLEAGY-TQTSMRMFRRN 276 (430)
T ss_pred HHHHHHH-hCCCCEEEEcccccc-CCCccchhcCCCHHHHHHHHHHHHHHHHHcCC-eEEeecceecC
Confidence 8888776 589999999876432 222221110 000001111 245566777786 55999998653
No 124
>COG1801 Uncharacterized conserved protein [Function unknown]
Probab=38.32 E-value=3.2e+02 Score=25.04 Aligned_cols=109 Identities=7% Similarity=-0.056 Sum_probs=65.9
Q ss_pred cceeccccccCCCCCCCCHHHHHHHHHHHHHcCCCeEeCccCcCCCchHHHHHHHHhcCCCCCeEEEeeeeeccCCCccc
Q 018374 23 KLGFGCMGLTGMYNSPVSEEDGISIIKHAFNKGITFFDTADVYGAHANEVLVGKVLKQLPRKKIQLASKFGVVSMAPTSV 102 (357)
Q Consensus 23 ~lglG~~~~g~~~~~~~~~~~~~~~l~~A~~~Gin~~DtA~~Yg~g~sE~~lG~al~~~~R~~~~I~tK~~~~~~~~~~~ 102 (357)
.||++.|+.....+..-+.+...+-.-..+...+|.+.--..|=.-.+++.+-+|.++ ..+++..+.|+...-..
T Consensus 4 ~IG~sGW~~~~w~~~~yp~~~~~~~~L~~y~~~f~~VEiN~TFYa~p~~~t~~~W~~~-~p~~FrFsvK~~~~iTH---- 78 (263)
T COG1801 4 YIGTSGWSYPDWEGLFYPEGLKKKEFLAYYASHFNTVEINSTFYAPPSPETVLRWAEE-TPDDFRFSVKAPRAITH---- 78 (263)
T ss_pred EEeecCCCcccccccccCcccchhhHHHHHhccCCEEEECCcccCCCCHHHHHHHHHh-CCCCeEEEEEecccccc----
Confidence 4566666654322222223233343445566678888754333223477888888886 88999999998643211
Q ss_pred ccCCCH---HHHHHHHHHHHhHhCCCcccEEEeecCCCC
Q 018374 103 IVKGTP---EYVRSCCEASLKRLGVDYIDLYYQHRVDPS 138 (357)
Q Consensus 103 ~~~~~~---~~i~~~v~~sL~~Lg~d~iDl~~lH~pd~~ 138 (357)
..... ..+.+.+.+-++.|| +.+..+++--|..-
T Consensus 79 -~~~l~~~~~~~~~~~~~~~~~L~-~klg~il~Q~Ppsf 115 (263)
T COG1801 79 -QRRLKECDFELWEFFLEPLAPLG-ERLGPILFQLPPSF 115 (263)
T ss_pred -hhhhccchHHHHHHHHHHHHhhh-cccceEEEecCCcc
Confidence 12222 345555666666788 68999999888554
No 125
>cd00405 PRAI Phosphoribosylanthranilate isomerase (PRAI) catalyzes the fourth step of the tryptophan biosynthesis, the conversion of N-(5'- phosphoribosyl)-anthranilate (PRA) to 1-(o-carboxyphenylamino)- 1-deoxyribulose 5-phosphate (CdRP). Most PRAIs are monomeric, monofunctional and thermolabile, but in some thermophile organisms PRAI is dimeric for reasons of stability and in others it is fused to other components of the tryptophan biosynthesis pathway to form multifunctional enzymes.
Probab=38.22 E-value=2.6e+02 Score=24.06 Aligned_cols=41 Identities=15% Similarity=0.080 Sum_probs=25.7
Q ss_pred cccEEEeecCCCCCCccccccCCCChhHHHHHHHHHHHcCccceEecCCCCHHHH
Q 018374 126 YIDLYYQHRVDPSVPIEDTVCDSLPTSLNIGELKMLVVEGKIKYIGLSEASPDTI 180 (357)
Q Consensus 126 ~iDl~~lH~pd~~~~~~~~~~~~~~~~~~~~aL~~L~~~G~ir~iGvS~~~~~~l 180 (357)
.+|.++||..++ .+. .+.+.+......++.+|+++.....+
T Consensus 73 ~~d~Vqlhg~e~----~~~----------~~~l~~~~~~~~i~~i~~~~~~~~~~ 113 (203)
T cd00405 73 GLDVVQLHGDES----PEY----------CAQLRARLGLPVIKAIRVKDEEDLEK 113 (203)
T ss_pred CCCEEEECCCCC----HHH----------HHHHHhhcCCcEEEEEecCChhhHHH
Confidence 378999998642 112 44444433456889999998755443
No 126
>COG0274 DeoC Deoxyribose-phosphate aldolase [Nucleotide transport and metabolism]
Probab=37.90 E-value=2.3e+02 Score=25.29 Aligned_cols=86 Identities=23% Similarity=0.250 Sum_probs=56.4
Q ss_pred cccceeccccccCCCCCCCCHHHHHHHHHHHHHcCCCeEeCccCcC-CCchHHHHHHHHhcCCCCCeEEEeeeeeccCCC
Q 018374 21 VSKLGFGCMGLTGMYNSPVSEEDGISIIKHAFNKGITFFDTADVYG-AHANEVLVGKVLKQLPRKKIQLASKFGVVSMAP 99 (357)
Q Consensus 21 vs~lglG~~~~g~~~~~~~~~~~~~~~l~~A~~~Gin~~DtA~~Yg-~g~sE~~lG~al~~~~R~~~~I~tK~~~~~~~~ 99 (357)
+-++++-|..+ +.++..++.+.+.++|..|+-||.-+. .|-+.+.+ +.+++.- .-++|....++
T Consensus 127 ~lKVIlEt~~L--------t~ee~~~A~~i~~~aGAdFVKTSTGf~~~gAT~edv-~lM~~~v------g~~vgvKaSGG 191 (228)
T COG0274 127 VLKVILETGLL--------TDEEKRKACEIAIEAGADFVKTSTGFSAGGATVEDV-KLMKETV------GGRVGVKASGG 191 (228)
T ss_pred eEEEEEecccc--------CHHHHHHHHHHHHHhCCCEEEcCCCCCCCCCCHHHH-HHHHHHh------ccCceeeccCC
Confidence 44566676665 678889999999999999999998554 34444333 2233211 12223222221
Q ss_pred cccccCCCHHHHHHHHHHHHhHhCCCc
Q 018374 100 TSVIVKGTPEYVRSCCEASLKRLGVDY 126 (357)
Q Consensus 100 ~~~~~~~~~~~i~~~v~~sL~~Lg~d~ 126 (357)
=.+.+.....++-...|+|+..
T Consensus 192 -----Irt~eda~~~i~aga~RiGtSs 213 (228)
T COG0274 192 -----IRTAEDAKAMIEAGATRIGTSS 213 (228)
T ss_pred -----cCCHHHHHHHHHHhHHHhcccc
Confidence 2378999999999999999763
No 127
>PTZ00081 enolase; Provisional
Probab=37.35 E-value=3.7e+02 Score=26.65 Aligned_cols=96 Identities=16% Similarity=0.124 Sum_probs=67.1
Q ss_pred CCHHHHHHHHHHHHhHhCCCcccEEEeecCCCCCCccccccCCCChhHHHHHHHHHHHcC--ccceEecC--CCCHHHHH
Q 018374 106 GTPEYVRSCCEASLKRLGVDYIDLYYQHRVDPSVPIEDTVCDSLPTSLNIGELKMLVVEG--KIKYIGLS--EASPDTIR 181 (357)
Q Consensus 106 ~~~~~i~~~v~~sL~~Lg~d~iDl~~lH~pd~~~~~~~~~~~~~~~~~~~~aL~~L~~~G--~ir~iGvS--~~~~~~l~ 181 (357)
.+++.+.+-+.+.++.++ ++++..|-+. +. |+.+.+|.++- .|.-+|=- ..+++.+.
T Consensus 281 ~s~~eli~~~~~~l~~y~-----I~~IEDPl~~----~D----------~eg~~~Lt~~lg~~i~IvgDE~~~tn~~~l~ 341 (439)
T PTZ00081 281 LTGEELVELYLDLVKKYP-----IVSIEDPFDQ----DD----------WEAYAKLTAAIGQKVQIVGDDLLVTNPTRIK 341 (439)
T ss_pred cCHHHHHHHHHHHHhcCC-----cEEEEcCCCc----cc----------HHHHHHHHHhhCCCceEEcCCcccCCHHHHH
Confidence 567777776666666654 6667766432 22 77778887764 55544432 35699999
Q ss_pred HHhccCCceEEecccccccc-chhhhHHHHHHHhCCceee
Q 018374 182 RAHAVHPITAVQMEWSLLTR-DIEEEIIPLCRELGIGIVP 220 (357)
Q Consensus 182 ~~~~~~~~~~~q~~~n~~~~-~~~~~~~~~~~~~gi~v~a 220 (357)
+.++....+++|+..|-.-- ....+....|+.+|+.++.
T Consensus 342 ~~I~~~aad~i~iKvnqiGGITe~l~~a~lA~~~Gi~~ii 381 (439)
T PTZ00081 342 KAIEKKACNALLLKVNQIGTVTEAIEAAKLAQKNGWGVMV 381 (439)
T ss_pred HHHHhCCCCEEEeccccccCHHHHHHHHHHHHHcCCcEEE
Confidence 99998888889888775432 2236789999999999876
No 128
>cd03324 rTSbeta_L-fuconate_dehydratase Human rTS beta is encoded by the rTS gene which, through alternative RNA splicing, also encodes rTS alpha whose mRNA is complementary to thymidylate synthase mRNA. rTS beta expression is associated with the production of small molecules that appear to mediate the down-regulation of thymidylate synthase protein by a novel intercellular signaling mechanism. A member of this family, from Xanthomonas, has been characterized to be a L-fuconate dehydratase. rTS beta belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=37.27 E-value=4.1e+02 Score=26.04 Aligned_cols=150 Identities=14% Similarity=0.140 Sum_probs=85.3
Q ss_pred CHHHHHHHHHHHHHcCCCeEeCccCcCCCch--HHHHHHHHhcCCCCCeEEEeeeeeccCCCcccccCCCHHHHHHHHHH
Q 018374 40 SEEDGISIIKHAFNKGITFFDTADVYGAHAN--EVLVGKVLKQLPRKKIQLASKFGVVSMAPTSVIVKGTPEYVRSCCEA 117 (357)
Q Consensus 40 ~~~~~~~~l~~A~~~Gin~~DtA~~Yg~g~s--E~~lG~al~~~~R~~~~I~tK~~~~~~~~~~~~~~~~~~~i~~~v~~ 117 (357)
+.++..+....+++.|++.|=.-- |.... .+.+ +++++.-.+++.|..=... .++.+...+.++
T Consensus 196 ~~~~~~~~a~~~~~~Gf~~~KiKv--g~~~~~d~~~v-~avRe~vG~~~~L~vDaN~----------~w~~~~A~~~~~- 261 (415)
T cd03324 196 SDEKLRRLCKEALAQGFTHFKLKV--GADLEDDIRRC-RLAREVIGPDNKLMIDANQ----------RWDVPEAIEWVK- 261 (415)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEeC--CCCHHHHHHHH-HHHHHhcCCCCeEEEECCC----------CCCHHHHHHHHH-
Confidence 445566777777888999875321 11111 1222 3344432233333222110 234444333332
Q ss_pred HHhHhCCCcccEEEeecCCCCCCccccccCCCChhHHHHHHHHHHHcC---ccc-eEecCCCCHHHHHHHhccCCceEEe
Q 018374 118 SLKRLGVDYIDLYYQHRVDPSVPIEDTVCDSLPTSLNIGELKMLVVEG---KIK-YIGLSEASPDTIRRAHAVHPITAVQ 193 (357)
Q Consensus 118 sL~~Lg~d~iDl~~lH~pd~~~~~~~~~~~~~~~~~~~~aL~~L~~~G---~ir-~iGvS~~~~~~l~~~~~~~~~~~~q 193 (357)
.|+. .++.++..|-+. +. ++.+.+|++.. .+. +.|=|.++.+.+.++++...++++|
T Consensus 262 ~L~~-----~~l~~iEEP~~~----~d----------~~~~~~L~~~~~~~~iPIa~gEs~~~~~~~~~ll~~~a~dil~ 322 (415)
T cd03324 262 QLAE-----FKPWWIEEPTSP----DD----------ILGHAAIRKALAPLPIGVATGEHCQNRVVFKQLLQAGAIDVVQ 322 (415)
T ss_pred Hhhc-----cCCCEEECCCCC----Cc----------HHHHHHHHHhcccCCCceecCCccCCHHHHHHHHHcCCCCEEE
Confidence 2233 355566665332 22 77778887764 232 3344567889999999888889999
Q ss_pred cccccccc-chhhhHHHHHHHhCCceeecc
Q 018374 194 MEWSLLTR-DIEEEIIPLCRELGIGIVPYS 222 (357)
Q Consensus 194 ~~~n~~~~-~~~~~~~~~~~~~gi~v~a~s 222 (357)
+...-.-- ....++..+|+.+|+.+..++
T Consensus 323 ~d~~~~GGit~~~kia~lA~a~gi~~~pH~ 352 (415)
T cd03324 323 IDSCRLGGVNENLAVLLMAAKFGVPVCPHA 352 (415)
T ss_pred eCccccCCHHHHHHHHHHHHHcCCeEEEcC
Confidence 87665432 123689999999999987763
No 129
>COG3215 PilZ Tfp pilus assembly protein PilZ [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=36.56 E-value=1.8e+02 Score=22.44 Aligned_cols=80 Identities=23% Similarity=0.124 Sum_probs=51.5
Q ss_pred CHHHHHHHHHHHHHcCCCeEeCccCcCCCchHHHHHHHHhcCCCCCeEEEeeeeeccCCCc-------cccc--CCCHHH
Q 018374 40 SEEDGISIIKHAFNKGITFFDTADVYGAHANEVLVGKVLKQLPRKKIQLASKFGVVSMAPT-------SVIV--KGTPEY 110 (357)
Q Consensus 40 ~~~~~~~~l~~A~~~Gin~~DtA~~Yg~g~sE~~lG~al~~~~R~~~~I~tK~~~~~~~~~-------~~~~--~~~~~~ 110 (357)
|.........-++++|.-|+-|-..|--| .|..+---|-+ ..+++.|++|+.+-.+.+. +..+ +-.-..
T Consensus 18 D~a~LYsaYMpfl~nGglFVpTnk~y~iG-~evfl~l~lld-~pekl~vagkVaWitP~gt~sr~~GiGv~f~d~e~g~~ 95 (117)
T COG3215 18 DMALLYSAYMPFLENGGLFVPTNKVYSIG-EEVFLLLELLD-FPEKLPVAGKVAWITPVGTQSRPAGIGVQFTDGENGLK 95 (117)
T ss_pred hHHHHHHHHhHHHhcCcEEcccCCccccc-hhhhhhhhhcC-chhhccccceEEEEccCCCCCCCCceeeeccCCCchhh
Confidence 66667788888899999999999999765 34444222222 5669999999965443211 1111 122346
Q ss_pred HHHHHHHHHhH
Q 018374 111 VRSCCEASLKR 121 (357)
Q Consensus 111 i~~~v~~sL~~ 121 (357)
++..+|.-|..
T Consensus 96 vr~~IE~~Lg~ 106 (117)
T COG3215 96 VRNQIETLLGG 106 (117)
T ss_pred HHHHHHHHHHh
Confidence 77788777654
No 130
>COG4943 Predicted signal transduction protein containing sensor and EAL domains [Signal transduction mechanisms]
Probab=36.00 E-value=1.6e+02 Score=29.47 Aligned_cols=128 Identities=15% Similarity=0.112 Sum_probs=76.9
Q ss_pred HHHHHHHHhcCCCCCeEEEeeeeeccCCCcccccCCCHHHHHHHHHHHHhHhCCCcccEEEeecCCCCCCccccccCCCC
Q 018374 71 EVLVGKVLKQLPRKKIQLASKFGVVSMAPTSVIVKGTPEYVRSCCEASLKRLGVDYIDLYYQHRVDPSVPIEDTVCDSLP 150 (357)
Q Consensus 71 E~~lG~al~~~~R~~~~I~tK~~~~~~~~~~~~~~~~~~~i~~~v~~sL~~Lg~d~iDl~~lH~pd~~~~~~~~~~~~~~ 150 (357)
-+-+|.+|++ +.+++|+..+... |+....+..-+.+.+++=++.-= .-.+|-++..+.+
T Consensus 341 ~~dlG~~L~~--~~~l~VsINl~a~---------Dl~s~rli~~~~~~l~~~~v~pq----------QI~lElTER~f~D 399 (524)
T COG4943 341 FRDLGDLLRQ--HRDLHVSINLSAS---------DLASPRLIDRLNRKLAQYQVRPQ----------QIALELTERTFAD 399 (524)
T ss_pred HHHhHHHHHh--CcceEEEEeeeeh---------hhcCchHHHHHHHHHHhcCcChH----------HheeehhhhhhcC
Confidence 3556777764 6678888888655 45556677777877777765421 1223444444566
Q ss_pred hhHHHHHHHHHHHcCccceEecCCC-----CHHHHHHH-hccCCce--EE-eccccccccchhhhHHHHHHHhCCceeec
Q 018374 151 TSLNIGELKMLVVEGKIKYIGLSEA-----SPDTIRRA-HAVHPIT--AV-QMEWSLLTRDIEEEIIPLCRELGIGIVPY 221 (357)
Q Consensus 151 ~~~~~~aL~~L~~~G~ir~iGvS~~-----~~~~l~~~-~~~~~~~--~~-q~~~n~~~~~~~~~~~~~~~~~gi~v~a~ 221 (357)
...+...++.+++.|. .|=+-.| +...|..+ ++.-++| ++ -+.++..+......+++.++++|+.+++=
T Consensus 400 ~~~~~~iI~r~ReaG~--~IyIDDFGTGYSnL~YLq~L~VDaLKIDKsFvdtlg~~~a~~~I~~hII~MAk~L~L~iVaE 477 (524)
T COG4943 400 PKKMTPIILRLREAGH--EIYIDDFGTGYSNLHYLQSLPVDALKIDKSFVDTLGTDSASHLIAPHIIEMAKSLGLKIVAE 477 (524)
T ss_pred chhhhHHHHHHHhcCC--eEEEccCcCcchhHHHHhhCCccceeccHHHHHhhccCcccchhHHHHHHHHHHcCCcEEee
Confidence 6667899999999998 4444433 22333332 1111121 22 22344433333467999999999999874
No 131
>PRK15440 L-rhamnonate dehydratase; Provisional
Probab=35.83 E-value=1.3e+02 Score=29.26 Aligned_cols=69 Identities=17% Similarity=0.070 Sum_probs=52.0
Q ss_pred HHHHHHHHHHHcCcc--c-eEecCCCCHHHHHHHhccCCceEEecccccccc-chhhhHHHHHHHhCCceeec
Q 018374 153 LNIGELKMLVVEGKI--K-YIGLSEASPDTIRRAHAVHPITAVQMEWSLLTR-DIEEEIIPLCRELGIGIVPY 221 (357)
Q Consensus 153 ~~~~aL~~L~~~G~i--r-~iGvS~~~~~~l~~~~~~~~~~~~q~~~n~~~~-~~~~~~~~~~~~~gi~v~a~ 221 (357)
+-++.+.+|+++-.+ . .-|-+.++.+.++.+++...++++|....-.-- ....++..+|+.+|+.++.+
T Consensus 246 ~d~~~~~~L~~~~~~~i~ia~gE~~~~~~~~~~li~~~a~Divq~d~~~~GGit~~~kia~lA~a~gi~~~pH 318 (394)
T PRK15440 246 DDYWGYRELKRNAPAGMMVTSGEHEATLQGFRTLLEMGCIDIIQPDVGWCGGLTELVKIAALAKARGQLVVPH 318 (394)
T ss_pred ccHHHHHHHHHhCCCCCceecCCCccCHHHHHHHHHcCCCCEEeCCccccCCHHHHHHHHHHHHHcCCeeccc
Confidence 347888888887542 2 336777899999999998889999987665431 12368999999999998665
No 132
>PRK05628 coproporphyrinogen III oxidase; Validated
Probab=35.46 E-value=2.7e+02 Score=26.71 Aligned_cols=28 Identities=25% Similarity=0.319 Sum_probs=22.0
Q ss_pred CCCHHHHHHHHHHHHhHhCCCcccEEEee
Q 018374 105 KGTPEYVRSCCEASLKRLGVDYIDLYYQH 133 (357)
Q Consensus 105 ~~~~~~i~~~v~~sL~~Lg~d~iDl~~lH 133 (357)
..+.+.+.+.++..+ .|+.+++.+|.+.
T Consensus 171 gqt~~~~~~tl~~~~-~l~~~~i~~y~l~ 198 (375)
T PRK05628 171 GESDDDWRASLDAAL-EAGVDHVSAYALI 198 (375)
T ss_pred CCCHHHHHHHHHHHH-hcCCCEEEeeeee
Confidence 347888888888655 5999999998876
No 133
>cd08583 PI-PLCc_GDPD_SF_unchar1 Uncharacterized hypothetical proteins similar to the catalytic domains of Phosphoinositide-specific phospholipaseand Glycerophosphodiester phosphodiesterases. This subfamily corresponds to a group of uncharacterized hypothetical proteins similar to the catalytic domains of Phosphoinositide-specific phospholipase C (PI-PLC), and glycerophosphodiester phosphodiesterases (GP-GDE), and also sphingomyelinases D (SMases D) and similar proteins. They hydrolyze the 3'-5' phosphodiester bonds in different substrates, utilizing a similar mechanism of general base and acid catalysis involving two conserved histidine residues.
Probab=35.35 E-value=3.2e+02 Score=24.16 Aligned_cols=20 Identities=20% Similarity=0.581 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHcCCCeEe
Q 018374 41 EEDGISIIKHAFNKGITFFD 60 (357)
Q Consensus 41 ~~~~~~~l~~A~~~Gin~~D 60 (357)
.+.....++.|++.|+..|.
T Consensus 14 pENTl~Af~~A~~~G~d~iE 33 (237)
T cd08583 14 YTNSLDAFEHNYKKGYRVFE 33 (237)
T ss_pred CccHHHHHHHHHHhCCCEEE
Confidence 47789999999999999885
No 134
>cd06543 GH18_PF-ChiA-like PF-ChiA is an uncharacterized chitinase found in the hyperthermophilic archaeon Pyrococcus furiosus with a glycosyl hydrolase family 18 (GH18) catalytic domain as well as a cellulose-binding domain. Members of this domain family are found not only in archaea but also in eukaryotes and prokaryotes. PF-ChiA exhibits hydrolytic activity toward both colloidal and crystalline (beta/alpha) chitins at high temperature.
Probab=35.20 E-value=3.7e+02 Score=24.96 Aligned_cols=186 Identities=18% Similarity=0.147 Sum_probs=88.0
Q ss_pred ceeccccccCCCC-CCCCHHHHHHHHHHHHHc-CCCeEeCccCcCCCc---hHHHHHHHHhcC--CCCCeEEEeeeeecc
Q 018374 24 LGFGCMGLTGMYN-SPVSEEDGISIIKHAFNK-GITFFDTADVYGAHA---NEVLVGKVLKQL--PRKKIQLASKFGVVS 96 (357)
Q Consensus 24 lglG~~~~g~~~~-~~~~~~~~~~~l~~A~~~-Gin~~DtA~~Yg~g~---sE~~lG~al~~~--~R~~~~I~tK~~~~~ 96 (357)
|.||.+..+. +. ...+.++..+.+...++. |++.||----|+.-. +-..+-++|+.+ .+..+.|+.-++...
T Consensus 72 iS~GG~~g~~-~~~~~~~~~~~~~a~~~~i~~y~~dgiDfDiE~~~~~d~~~~~~~~~al~~Lq~~~p~l~vs~Tlp~~p 150 (294)
T cd06543 72 VSFGGASGTP-LATSCTSADQLAAAYQKVIDAYGLTHLDFDIEGGALTDTAAIDRRAQALALLQKEYPDLKISFTLPVLP 150 (294)
T ss_pred EEecCCCCCc-cccCcccHHHHHHHHHHHHHHhCCCeEEEeccCCccccchhHHHHHHHHHHHHHHCCCcEEEEecCCCC
Confidence 4677665332 21 123556666666666654 999998654444211 124455666654 334566666664332
Q ss_pred CCCcccccCCCHHHHHHHHHHHHhHhCCCcccEEEeecCCCCCCccccccCCCChhHHHHHHHHHHHcCccceEecCCCC
Q 018374 97 MAPTSVIVKGTPEYVRSCCEASLKRLGVDYIDLYYQHRVDPSVPIEDTVCDSLPTSLNIGELKMLVVEGKIKYIGLSEAS 176 (357)
Q Consensus 97 ~~~~~~~~~~~~~~i~~~v~~sL~~Lg~d~iDl~~lH~pd~~~~~~~~~~~~~~~~~~~~aL~~L~~~G~ir~iGvS~~~ 176 (357)
. .+..+.+ .+-+....-|+ ++|.+-|--.|...... ....-..+..+.+.++.+=+--+=+.|
T Consensus 151 ~-------gl~~~g~--~~l~~a~~~Gv-~~d~VNiMtmDyg~~~~----~~~mg~~a~~aa~~~~~ql~~~~~~~s--- 213 (294)
T cd06543 151 T-------GLTPDGL--NVLEAAAANGV-DLDTVNIMTMDYGSSAG----SQDMGAAAISAAESLHDQLKDLYPKLS--- 213 (294)
T ss_pred C-------CCChhHH--HHHHHHHHcCC-CcceeeeeeecCCCCCC----cccHHHHHHHHHHHHHHHHHHHccCCC---
Confidence 1 2232222 23333344443 24444443333322110 000112346666666665332222333
Q ss_pred HHHHHHHhccCCc-eEEeccccccccchhhhHHHHHHHhCCceeecccCccc
Q 018374 177 PDTIRRAHAVHPI-TAVQMEWSLLTRDIEEEIIPLCRELGIGIVPYSPLGRG 227 (357)
Q Consensus 177 ~~~l~~~~~~~~~-~~~q~~~n~~~~~~~~~~~~~~~~~gi~v~a~spl~~G 227 (357)
..++=..+...|. =.+=..--++...-...+.+|++++||+.++|..+.+-
T Consensus 214 ~~~~~~~ig~TpMiG~nD~~~e~ft~~da~~~~~fA~~~~l~~~s~Ws~~RD 265 (294)
T cd06543 214 DAELWAMIGVTPMIGVNDVGSEVFTLADAQTLVDFAKEKGLGRLSMWSLNRD 265 (294)
T ss_pred HHHHHHHccccccccccCCCCceeeHHHHHHHHHHHHhCCCCeEeeeeccCC
Confidence 3333333333221 00000000222222368999999999999999888753
No 135
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=35.01 E-value=1.7e+02 Score=26.71 Aligned_cols=70 Identities=17% Similarity=0.109 Sum_probs=50.3
Q ss_pred CCHHHHHHHHHHHHhHhC--------------------------CCcccEEEeecCCCCCCccccccCCCChhHHHHHHH
Q 018374 106 GTPEYVRSCCEASLKRLG--------------------------VDYIDLYYQHRVDPSVPIEDTVCDSLPTSLNIGELK 159 (357)
Q Consensus 106 ~~~~~i~~~v~~sL~~Lg--------------------------~d~iDl~~lH~pd~~~~~~~~~~~~~~~~~~~~aL~ 159 (357)
++.+. ++.++++|+++| ....|+++|.-|-.--+.. .....++-|.
T Consensus 112 ~~~~d-~~~v~~aL~~Vgm~~~~~r~i~~LSGGQ~QRV~lARAL~~~p~lllLDEP~~gvD~~-------~~~~i~~lL~ 183 (254)
T COG1121 112 LNKKD-KEKVDEALERVGMEDLRDRQIGELSGGQKQRVLLARALAQNPDLLLLDEPFTGVDVA-------GQKEIYDLLK 183 (254)
T ss_pred ccHHH-HHHHHHHHHHcCchhhhCCcccccCcHHHHHHHHHHHhccCCCEEEecCCcccCCHH-------HHHHHHHHHH
Confidence 44555 788999999998 5667888888874332221 1234499999
Q ss_pred HHHHcCccceEecCCCCHHHHHHHhc
Q 018374 160 MLVVEGKIKYIGLSEASPDTIRRAHA 185 (357)
Q Consensus 160 ~L~~~G~ir~iGvS~~~~~~l~~~~~ 185 (357)
+|+++|+ .|=+.+|+...+.+..+
T Consensus 184 ~l~~eg~--tIl~vtHDL~~v~~~~D 207 (254)
T COG1121 184 ELRQEGK--TVLMVTHDLGLVMAYFD 207 (254)
T ss_pred HHHHCCC--EEEEEeCCcHHhHhhCC
Confidence 9999987 78888888887766543
No 136
>cd03320 OSBS o-Succinylbenzoate synthase (OSBS) catalyzes the conversion of 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate (SHCHC) to 4-(2'-carboxyphenyl)-4-oxobutyrate (o-succinylbenzoate or OSB), a reaction in the menaquinone biosynthetic pathway. Menaquinone is an essential cofactor for anaerobic growth in eubacteria and some archaea. OSBS belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=34.95 E-value=1.5e+02 Score=26.86 Aligned_cols=71 Identities=24% Similarity=0.150 Sum_probs=49.4
Q ss_pred HHHHHHHHHcCccceEecCCCCHHHHHHHhccCCceEEecccccccc-chhhhHHHHHHHhCCceeecccCcc
Q 018374 155 IGELKMLVVEGKIKYIGLSEASPDTIRRAHAVHPITAVQMEWSLLTR-DIEEEIIPLCRELGIGIVPYSPLGR 226 (357)
Q Consensus 155 ~~aL~~L~~~G~ir~iGvS~~~~~~l~~~~~~~~~~~~q~~~n~~~~-~~~~~~~~~~~~~gi~v~a~spl~~ 226 (357)
++.+.++. .+.=-+.|=|-++.+.+..+++...++++|+.....-- .....+...|+.+|+.++..+-+..
T Consensus 167 ~~~~~~l~-~~~PIa~dEs~~~~~~~~~~~~~~~~d~v~~k~~~~GGit~~~~i~~~a~~~gi~~~~~~~~es 238 (263)
T cd03320 167 LAELRRLA-AGVPIALDESLRRLDDPLALAAAGALGALVLKPALLGGPRALLELAEEARARGIPAVVSSALES 238 (263)
T ss_pred HHHHHHhh-cCCCeeeCCccccccCHHHHHhcCCCCEEEECchhcCCHHHHHHHHHHHHHcCCCEEEEcchhh
Confidence 66666666 33333555566777888888888888999887665332 1236889999999999988654443
No 137
>KOG2264 consensus Exostosin EXT1L [Signal transduction mechanisms]
Probab=34.93 E-value=1.4e+02 Score=30.43 Aligned_cols=63 Identities=21% Similarity=0.222 Sum_probs=45.4
Q ss_pred CchHHHHHHHHhcC-CCCCeEEEeeeeeccCCCcccccCCCHHHHHHHHHHHHhHh-CCCcccEEEeecCCCCCCccccc
Q 018374 68 HANEVLVGKVLKQL-PRKKIQLASKFGVVSMAPTSVIVKGTPEYVRSCCEASLKRL-GVDYIDLYYQHRVDPSVPIEDTV 145 (357)
Q Consensus 68 g~sE~~lG~al~~~-~R~~~~I~tK~~~~~~~~~~~~~~~~~~~i~~~v~~sL~~L-g~d~iDl~~lH~pd~~~~~~~~~ 145 (357)
|-|-.-++++|... +|+++.|.--..- + ++-+-.||+|| |.-|+.=+.+-|-.+..+.++..
T Consensus 632 gGsGkEF~~aLGGN~pREQFTvVmLTYE-------------R---e~VLm~sLeRL~gLPYLnKvvVVWNspk~P~ddl~ 695 (907)
T KOG2264|consen 632 GGSGKEFSKALGGNRPREQFTVVMLTYE-------------R---EAVLMGSLERLHGLPYLNKVVVVWNSPKDPPDDLT 695 (907)
T ss_pred CCchHHHHHHhcCCCccceEEEEEEEeh-------------H---HHHHHHHHHHhhCCcccceEEEEeCCCCCChhccc
Confidence 55788899999765 8999987765432 2 34567889999 67798888888876666666554
Q ss_pred c
Q 018374 146 C 146 (357)
Q Consensus 146 ~ 146 (357)
|
T Consensus 696 W 696 (907)
T KOG2264|consen 696 W 696 (907)
T ss_pred C
Confidence 3
No 138
>PRK05406 LamB/YcsF family protein; Provisional
Probab=34.04 E-value=1.1e+02 Score=27.74 Aligned_cols=83 Identities=11% Similarity=0.167 Sum_probs=55.7
Q ss_pred eeccccccCCCCCCCCHHHHHHHHHHHHHcCCCeEeCccCcCCCchHHHHHHHHhcCCCCCeEEEeeeeeccCCC-cccc
Q 018374 25 GFGCMGLTGMYNSPVSEEDGISIIKHAFNKGITFFDTADVYGAHANEVLVGKVLKQLPRKKIQLASKFGVVSMAP-TSVI 103 (357)
Q Consensus 25 glG~~~~g~~~~~~~~~~~~~~~l~~A~~~Gin~~DtA~~Yg~g~sE~~lG~al~~~~R~~~~I~tK~~~~~~~~-~~~~ 103 (357)
+||.|.+| +.++.-.++..|- |=|.-|.| ....+-+.++-.....|.|...-++.+..+ |+..
T Consensus 13 ~fG~w~~g-------~D~~lmp~IssAN------IACG~HAG---Dp~~M~~tv~lA~~~gV~IGAHPgypD~~gFGRR~ 76 (246)
T PRK05406 13 SFGAWKMG-------DDEALLPLVTSAN------IACGFHAG---DPAVMRRTVRLAKENGVAIGAHPGYPDLEGFGRRN 76 (246)
T ss_pred CCCCCCCC-------CHHHHHHHhhhHH------HhccccCC---CHHHHHHHHHHHHHcCCeEccCCCCCccCCCCCCC
Confidence 67888775 4566777777663 33444677 466677777655667777777766554433 4445
Q ss_pred cCCCHHHHHHHHHHHHhHhC
Q 018374 104 VKGTPEYVRSCCEASLKRLG 123 (357)
Q Consensus 104 ~~~~~~~i~~~v~~sL~~Lg 123 (357)
.+.+++.++.++...+..|.
T Consensus 77 m~~s~~el~~~v~yQigAL~ 96 (246)
T PRK05406 77 MDLSPEELYALVLYQIGALQ 96 (246)
T ss_pred CCCCHHHHHHHHHHHHHHHH
Confidence 67899999998887777773
No 139
>PRK06582 coproporphyrinogen III oxidase; Provisional
Probab=33.69 E-value=1.4e+02 Score=28.89 Aligned_cols=69 Identities=12% Similarity=-0.023 Sum_probs=39.9
Q ss_pred CCCHHHHHHHHHHHHhHhCCCcccEEEeec-CCCCCCcccc----ccCCCC---hhH-HHHHHHHHHHcCccceEecCCC
Q 018374 105 KGTPEYVRSCCEASLKRLGVDYIDLYYQHR-VDPSVPIEDT----VCDSLP---TSL-NIGELKMLVVEGKIKYIGLSEA 175 (357)
Q Consensus 105 ~~~~~~i~~~v~~sL~~Lg~d~iDl~~lH~-pd~~~~~~~~----~~~~~~---~~~-~~~aL~~L~~~G~ir~iGvS~~ 175 (357)
.-+.+.+++.++..++ |+.++|.+|.+.- |+. ++... ....+. ... --.+.+.|.+.|..+ +++|||
T Consensus 173 gqt~e~~~~~l~~~~~-l~p~his~y~L~i~~gT--~l~~~~~~g~~~~p~~~~~~~~~~~~~~~L~~~Gy~~-yeis~f 248 (390)
T PRK06582 173 GQTLKDWQEELKQAMQ-LATSHISLYQLTIEKGT--PFYKLFKEGNLILPHSDAAAEMYEWTNHYLESKKYFR-YEISNY 248 (390)
T ss_pred CCCHHHHHHHHHHHHh-cCCCEEEEecCEEccCC--hHHHHHhcCCCCCCChHHHHHHHHHHHHHHHHcCCce-eeceee
Confidence 3478889999998886 8999999997753 321 11000 000000 011 123445567777755 788888
Q ss_pred CH
Q 018374 176 SP 177 (357)
Q Consensus 176 ~~ 177 (357)
..
T Consensus 249 a~ 250 (390)
T PRK06582 249 AK 250 (390)
T ss_pred eC
Confidence 54
No 140
>PRK14465 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=33.43 E-value=2.9e+02 Score=26.42 Aligned_cols=97 Identities=12% Similarity=0.113 Sum_probs=59.1
Q ss_pred EEeecCCCCCCccccc-cCCCChhHHHHHHHHHHHc-Cc---cceEecCC--CCHH---HHHHHhccCCceEEecccccc
Q 018374 130 YYQHRVDPSVPIEDTV-CDSLPTSLNIGELKMLVVE-GK---IKYIGLSE--ASPD---TIRRAHAVHPITAVQMEWSLL 199 (357)
Q Consensus 130 ~~lH~pd~~~~~~~~~-~~~~~~~~~~~aL~~L~~~-G~---ir~iGvS~--~~~~---~l~~~~~~~~~~~~q~~~n~~ 199 (357)
+.||.|+......-+. ....++...++++.++.++ |+ ++++=+.+ .+.+ .+.+++...+..++.++||..
T Consensus 216 iSLhA~~~e~R~~l~Pi~~~~~le~ll~al~~~~~~~~r~v~ieyvLI~GvNDs~eda~~L~~ll~~l~~kVnLIPyN~~ 295 (342)
T PRK14465 216 ISLNHPDPNGRLQIMDIEEKFPLEELLQAAKDFTRELKRRITFEYVMIPGVNMGRENANKLVKIARSLDCKINVIPLNTE 295 (342)
T ss_pred EEecCCChhhcceEeeccccCCHHHHHHHHHHHHHHcCCEEEEEEEEECCccCCHHHHHHHHHHHhhCCCcEEEEccCCC
Confidence 6789987653322221 1234567788888877643 22 22444443 3444 455555555678899999984
Q ss_pred ccc---hh----hhHHHHHHHhCCceeecccCcc
Q 018374 200 TRD---IE----EEIIPLCRELGIGIVPYSPLGR 226 (357)
Q Consensus 200 ~~~---~~----~~~~~~~~~~gi~v~a~spl~~ 226 (357)
..+ +. ..+.+.++++||.+......+.
T Consensus 296 ~~~~~~ps~e~i~~F~~~L~~~Gi~v~~R~~~G~ 329 (342)
T PRK14465 296 FFGWRRPTDDEVAEFIMLLEPAGVPILNRRSPGK 329 (342)
T ss_pred CCCCCCCCHHHHHHHHHHHHHCCCeEEEeCCCCc
Confidence 321 11 4566778889999988877654
No 141
>TIGR00737 nifR3_yhdG putative TIM-barrel protein, nifR3 family. Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase.
Probab=33.42 E-value=4e+02 Score=24.84 Aligned_cols=140 Identities=14% Similarity=0.087 Sum_probs=83.9
Q ss_pred CHHHHHHHHHHHHHcCCCeEeCc---------cCcCCC---chHHHHHHHHhcC-CCCCeEEEeeeeeccCCCcccccCC
Q 018374 40 SEEDGISIIKHAFNKGITFFDTA---------DVYGAH---ANEVLVGKVLKQL-PRKKIQLASKFGVVSMAPTSVIVKG 106 (357)
Q Consensus 40 ~~~~~~~~l~~A~~~Gin~~DtA---------~~Yg~g---~sE~~lG~al~~~-~R~~~~I~tK~~~~~~~~~~~~~~~ 106 (357)
+.++..+..+.+.+.|+..||-. ..|++. ...+.+.+.++.. .+-.+-|+.|+......
T Consensus 73 ~~~~~~~aa~~~~~~G~d~IelN~gcP~~~~~~~~~Gs~l~~~~~~~~ei~~~vr~~~~~pv~vKir~g~~~-------- 144 (319)
T TIGR00737 73 DPDTMAEAAKINEELGADIIDINMGCPVPKITKKGAGSALLRDPDLIGKIVKAVVDAVDIPVTVKIRIGWDD-------- 144 (319)
T ss_pred CHHHHHHHHHHHHhCCCCEEEEECCCCHHHhcCCCccchHhCCHHHHHHHHHHHHhhcCCCEEEEEEcccCC--------
Confidence 67888899999999999999853 123321 1235555555553 11235688887532111
Q ss_pred CHHHHHHHHHHHHhHhCCCcccEEEeecCCCCCCccccccCCCChhHHHHHHHHHHHcCccceEecCC-CCHHHHHHHhc
Q 018374 107 TPEYVRSCCEASLKRLGVDYIDLYYQHRVDPSVPIEDTVCDSLPTSLNIGELKMLVVEGKIKYIGLSE-ASPDTIRRAHA 185 (357)
Q Consensus 107 ~~~~i~~~v~~sL~~Lg~d~iDl~~lH~pd~~~~~~~~~~~~~~~~~~~~aL~~L~~~G~ir~iGvS~-~~~~~l~~~~~ 185 (357)
....+ ..+-+.|+..|+ |.+.+|.......... .-.|+.+.++++.=.+--||... .+++.++++++
T Consensus 145 ~~~~~-~~~a~~l~~~G~---d~i~vh~r~~~~~~~~--------~~~~~~i~~i~~~~~ipvi~nGgI~~~~da~~~l~ 212 (319)
T TIGR00737 145 AHINA-VEAARIAEDAGA---QAVTLHGRTRAQGYSG--------EANWDIIARVKQAVRIPVIGNGDIFSPEDAKAMLE 212 (319)
T ss_pred CcchH-HHHHHHHHHhCC---CEEEEEcccccccCCC--------chhHHHHHHHHHcCCCcEEEeCCCCCHHHHHHHHH
Confidence 11111 234445667775 5566686432211110 01278888888876677788777 47888999987
Q ss_pred cCCceEEecccccc
Q 018374 186 VHPITAVQMEWSLL 199 (357)
Q Consensus 186 ~~~~~~~q~~~n~~ 199 (357)
....+.+++---++
T Consensus 213 ~~gad~VmigR~~l 226 (319)
T TIGR00737 213 TTGCDGVMIGRGAL 226 (319)
T ss_pred hhCCCEEEEChhhh
Confidence 77788888754444
No 142
>PF07994 NAD_binding_5: Myo-inositol-1-phosphate synthase; InterPro: IPR002587 1L-myo-Inositol-1-phosphate synthase (5.5.1.4 from EC) catalyzes the conversion of D-glucose 6-phosphate to 1L-myo-inositol-1-phosphate, the first committed step in the production of all inositol-containing compounds, including phospholipids, either directly or by salvage. The enzyme exists in a cytoplasmic form in a wide range of plants, animals, and fungi. It has also been detected in several bacteria and a chloroplast form is observed in alga and higher plants. Inositol phosphates play an important role in signal transduction. In Saccharomyces cerevisiae (Baker's yeast), the transcriptional regulation of the INO1 gene has been studied in detail [] and its expression is sensitive to the availability of phospholipid precursors as well as growth phase. The regulation of the structural gene encoding 1L-myo-inositol-1-phosphate synthase has also been analyzed at the transcriptional level in the aquatic angiosperm, Spirodela polyrrhiza (Giant duckweed) and the halophyte, Mesembryanthemum crystallinum (Common ice plant) [].; GO: 0004512 inositol-3-phosphate synthase activity, 0006021 inositol biosynthetic process, 0008654 phospholipid biosynthetic process; PDB: 1GR0_A 1P1K_B 1LA2_B 1RM0_B 1P1I_B 1JKF_A 1P1F_A 1P1J_B 1JKI_B 1P1H_A ....
Probab=33.23 E-value=3e+02 Score=25.66 Aligned_cols=152 Identities=18% Similarity=0.156 Sum_probs=81.0
Q ss_pred CHHHHHHHHHHHHhHhCCCcccEEEeecCCCCCCccccccCCCChhHHHHHHHHHHHcCccceEecCCCCHHHHH-HHhc
Q 018374 107 TPEYVRSCCEASLKRLGVDYIDLYYQHRVDPSVPIEDTVCDSLPTSLNIGELKMLVVEGKIKYIGLSEASPDTIR-RAHA 185 (357)
Q Consensus 107 ~~~~i~~~v~~sL~~Lg~d~iDl~~lH~pd~~~~~~~~~~~~~~~~~~~~aL~~L~~~G~ir~iGvS~~~~~~l~-~~~~ 185 (357)
..+.+++.+.+-+++.|+|++=++.+-.-.+..+.. .....++++|++..+++.-. .++..+= .+.-
T Consensus 130 ~~e~~~~DI~~f~~~~~~d~vVvvn~asTE~~~~~~------~~~~~t~~~l~~al~~~~~~------~~aS~~YA~AAl 197 (295)
T PF07994_consen 130 QVEQIREDIRDFKKENGLDRVVVVNVASTERYIPVI------PGVHDTLEALEKALDENDPE------ISASMLYAYAAL 197 (295)
T ss_dssp HHHHHHHHHHHHHHHTT-SCEEEEE-SSCC-S---C------CCCCSSHHHHHHHHHTT-TT------HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCCcEEEEECCCCCCCCCCC------ccccCCHHHHHHHhhcCCCc------CChHHHHHHHHH
Confidence 456778889999999998754333333322211111 01122399999998876632 2233221 1111
Q ss_pred cCCceEEeccccccccchhhhHHHHHHHhCCceeec---ccCccccCCCCCcCCCCCCCcccccCCCCCCCcchhhHHHH
Q 018374 186 VHPITAVQMEWSLLTRDIEEEIIPLCRELGIGIVPY---SPLGRGLLGGKAVVESLPANSFLISHPRFTGENLGKNKQIY 262 (357)
Q Consensus 186 ~~~~~~~q~~~n~~~~~~~~~~~~~~~~~gi~v~a~---spl~~G~L~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 262 (357)
.....++-..=+.... ...+.++++++|+.++.- ++++.| ..--+
T Consensus 198 ~~g~~fvN~tP~~~a~--~P~l~ela~~~gvpi~GdD~KT~lAAp------------------------------lvlDL 245 (295)
T PF07994_consen 198 EAGVPFVNGTPSNIAD--DPALVELAEEKGVPIAGDDGKTPLAAP------------------------------LVLDL 245 (295)
T ss_dssp HTTEEEEE-SSSTTTT--SHHHHHHHHHHTEEEEESSBS-HHHHH------------------------------HHHHH
T ss_pred HCCCCeEeccCccccC--CHHHHHHHHHcCCCeecchHhhhhhhH------------------------------HHHHH
Confidence 1333333221111111 247899999999998752 333332 23345
Q ss_pred HHHHHHHHhcCCChHHHHHHHHHhCCCCeEEecCCCCHHHHHH
Q 018374 263 ARVENLAKRNKCTPAQLSLAWLLRQGDDIVPIPGTTKIKNLDE 305 (357)
Q Consensus 263 ~~l~~ia~~~g~s~~q~al~~~l~~~~v~~~ivG~~~~~~l~e 305 (357)
-++.++|.+.|..-.+-.++|..-.|. +=.|......+.+
T Consensus 246 irl~~la~r~g~~Gv~~~ls~ffK~P~---~~~g~~~~~~l~~ 285 (295)
T PF07994_consen 246 IRLAKLALRRGMGGVQEWLSFFFKSPM---VPPGPPQEHDLFE 285 (295)
T ss_dssp HHHHHHHHHTTS-EEHHHHHHHBSS-T-----TTSTT--HHHH
T ss_pred HHHHHHHHHcCCCChhHHHHHHhcCCC---ccCCCCCCCcHHH
Confidence 688899999999888889999999884 3355655555533
No 143
>COG1387 HIS2 Histidinol phosphatase and related hydrolases of the PHP family [Amino acid transport and metabolism / General function prediction only]
Probab=33.16 E-value=3.3e+02 Score=24.30 Aligned_cols=151 Identities=16% Similarity=0.201 Sum_probs=79.4
Q ss_pred HHHHHHHHHHcCCCeEeCccCcCC---CchHHHHHHHHhc---C--CCC-CeEEEeeeeeccCCCcccccCCCHHHHHHH
Q 018374 44 GISIIKHAFNKGITFFDTADVYGA---HANEVLVGKVLKQ---L--PRK-KIQLASKFGVVSMAPTSVIVKGTPEYVRSC 114 (357)
Q Consensus 44 ~~~~l~~A~~~Gin~~DtA~~Yg~---g~sE~~lG~al~~---~--~R~-~~~I~tK~~~~~~~~~~~~~~~~~~~i~~~ 114 (357)
..+++++|.+.|+..|=..++... +..++.+-...+. . ..+ ++++..-+...... ..++
T Consensus 18 ~~e~~~~A~~~g~~~~~iTdH~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~~G~E~~~~~~~----~~d~-------- 85 (237)
T COG1387 18 PEEMVEAAIELGLEYIAITDHAPFLRVGLDAELLKYFIEEIRELKKEYDIKILIGIEVDILPDG----SLDF-------- 85 (237)
T ss_pred HHHHHHHHHHcCCeEEEEeccccccccCCCHHHHHHHHHHHHHHHHhcCceEEEeEEEEecCCC----Cccc--------
Confidence 466699999999999977777665 5555555444432 2 222 22333333222211 0111
Q ss_pred HHHHHhHhCCCcccEEEeecCCCCCCccccccCCCChhHHHHHHHHHHHcCccceEecCCCC-------------HHHHH
Q 018374 115 CEASLKRLGVDYIDLYYQHRVDPSVPIEDTVCDSLPTSLNIGELKMLVVEGKIKYIGLSEAS-------------PDTIR 181 (357)
Q Consensus 115 v~~sL~~Lg~d~iDl~~lH~pd~~~~~~~~~~~~~~~~~~~~aL~~L~~~G~ir~iGvS~~~-------------~~~l~ 181 (357)
.+.-+..| | .=+..+|.+...+..+.. -.+.+..+...+.|.-+|=-+.. ...+.
T Consensus 86 ~~~~~~~l--D-~vi~svH~~~~~~~~~~~---------~~~~~~~a~~~~~v~il~H~~~~~~~~~~~~~~~~~~~~~~ 153 (237)
T COG1387 86 LDEILKEL--D-YVIASVHELNFEDQDEED---------YTERLIAAMSNGAVDILAHPGGRLLGRIDRGAYKEDIEELI 153 (237)
T ss_pred chhhHhhc--C-EEEEEeccCCccccCHHH---------HHHHHHHHHcCCCccEEecCCccccccccccccHHHHHHHH
Confidence 11112222 2 224577997532222222 27888888899999888765541 22233
Q ss_pred HHhccCCceEEeccccccccchhhhHHHHHHHhCCcee
Q 018374 182 RAHAVHPITAVQMEWSLLTRDIEEEIIPLCRELGIGIV 219 (357)
Q Consensus 182 ~~~~~~~~~~~q~~~n~~~~~~~~~~~~~~~~~gi~v~ 219 (357)
+++.... .++.+.-+.-...+..+++..|++.|+.+.
T Consensus 154 ~~~~~~g-~aleins~~~~~~~~~~~~~~~~e~G~~~~ 190 (237)
T COG1387 154 ELAEKNG-KALEINSRPGRLDPNSEILRLARELGVKLA 190 (237)
T ss_pred HHHHHhC-cEEeecCCcCccCchHHHHHHHHHhCCeEE
Confidence 3333333 223333333233345688899999987764
No 144
>cd00959 DeoC 2-deoxyribose-5-phosphate aldolase (DERA) of the DeoC family. DERA belongs to the class I aldolases and catalyzes a reversible aldol reaction between acetaldehyde and glyceraldehyde 3-phosphate to generate 2-deoxyribose 5-phosphate. DERA is unique in catalyzing the aldol reaction between two aldehydes, and its broad substrate specificity confers considerable utility as a biocatalyst, offering an environmentally benign alternative to chiral transition metal catalysis of the asymmetric aldol reaction.
Probab=33.06 E-value=2.8e+02 Score=24.00 Aligned_cols=70 Identities=24% Similarity=0.328 Sum_probs=46.3
Q ss_pred CHHHHHHHHHHHHHcCCCeEeCccCcCC-Cch-H--HHHHHHHhcCCCCCeEEEeeeeeccCCCcccccCCCHHHHHHHH
Q 018374 40 SEEDGISIIKHAFNKGITFFDTADVYGA-HAN-E--VLVGKVLKQLPRKKIQLASKFGVVSMAPTSVIVKGTPEYVRSCC 115 (357)
Q Consensus 40 ~~~~~~~~l~~A~~~Gin~~DtA~~Yg~-g~s-E--~~lG~al~~~~R~~~~I~tK~~~~~~~~~~~~~~~~~~~i~~~v 115 (357)
+.++...+.+.|.++|..|+=|+.-|.. |-+ | +.+.+.++ .+ +-.|.... .+ +.+...+-+
T Consensus 129 ~~~~i~~a~ria~e~GaD~IKTsTG~~~~~at~~~v~~~~~~~~----~~--v~ik~aGG--------ik-t~~~~l~~~ 193 (203)
T cd00959 129 TDEEIIKACEIAIEAGADFIKTSTGFGPGGATVEDVKLMKEAVG----GR--VGVKAAGG--------IR-TLEDALAMI 193 (203)
T ss_pred CHHHHHHHHHHHHHhCCCEEEcCCCCCCCCCCHHHHHHHHHHhC----CC--ceEEEeCC--------CC-CHHHHHHHH
Confidence 5678999999999999999999988862 222 2 34444443 22 33443211 02 677788888
Q ss_pred HHHHhHhCC
Q 018374 116 EASLKRLGV 124 (357)
Q Consensus 116 ~~sL~~Lg~ 124 (357)
+-...|+|+
T Consensus 194 ~~g~~riG~ 202 (203)
T cd00959 194 EAGATRIGT 202 (203)
T ss_pred HhChhhccC
Confidence 777777775
No 145
>TIGR00538 hemN oxygen-independent coproporphyrinogen III oxidase. This model represents HemN, the oxygen-independent coproporphyrinogen III oxidase that replaces HemF function under anaerobic conditions. Several species, including E. coli, Helicobacter pylori, and Aquifex aeolicus, have both a member of this family and a member of another, closely related family for which there is no evidence of coproporphyrinogen III oxidase activity. Members of this family have a perfectly conserved motif PYRT[SC]YP in a region N-terminal to the region of homology with the related uncharacterized protein.
Probab=33.04 E-value=1.3e+02 Score=29.88 Aligned_cols=122 Identities=14% Similarity=0.157 Sum_probs=61.2
Q ss_pred HHHHHHHHHcCCCeEeCccC---------cCCCchHHHHHHHHhcCCC---CCeEEEeeeeeccCCCcccccCCCHHHHH
Q 018374 45 ISIIKHAFNKGITFFDTADV---------YGAHANEVLVGKVLKQLPR---KKIQLASKFGVVSMAPTSVIVKGTPEYVR 112 (357)
Q Consensus 45 ~~~l~~A~~~Gin~~DtA~~---------Yg~g~sE~~lG~al~~~~R---~~~~I~tK~~~~~~~~~~~~~~~~~~~i~ 112 (357)
.+.++...++|+|.+--+-. .+-+.+.+.+-++++.... +.+-+.--+|.. ..+.+.+.
T Consensus 151 ~e~l~~lk~~G~~risiGvqS~~~~~l~~l~r~~~~~~~~~ai~~l~~~G~~~v~~dli~GlP---------gqt~e~~~ 221 (455)
T TIGR00538 151 KDVIDALRDEGFNRLSFGVQDFNKEVQQAVNRIQPEEMIFELMNHAREAGFTSINIDLIYGLP---------KQTKESFA 221 (455)
T ss_pred HHHHHHHHHcCCCEEEEcCCCCCHHHHHHhCCCCCHHHHHHHHHHHHhcCCCcEEEeEEeeCC---------CCCHHHHH
Confidence 45666666779998854321 2222232333344544321 122233333332 34788888
Q ss_pred HHHHHHHhHhCCCcccEEEe-ecCCCC--C-Ccccc-ccCCCChhHH-HHHHHHHHHcCccceEecCCCCH
Q 018374 113 SCCEASLKRLGVDYIDLYYQ-HRVDPS--V-PIEDT-VCDSLPTSLN-IGELKMLVVEGKIKYIGLSEASP 177 (357)
Q Consensus 113 ~~v~~sL~~Lg~d~iDl~~l-H~pd~~--~-~~~~~-~~~~~~~~~~-~~aL~~L~~~G~ir~iGvS~~~~ 177 (357)
+.++..++ |+.++|.+|.+ +.|... . ...+. ..+....... -.+.+.|.+.|. ..+++++|..
T Consensus 222 ~tl~~~~~-l~~~~is~y~L~~~p~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~L~~~Gy-~~~~~~~fa~ 290 (455)
T TIGR00538 222 KTLEKVAE-LNPDRLAVFNYAHVPWVKPAQRKIPEAALPSAEEKLDILQETIAFLTEAGY-QFIGMDHFAK 290 (455)
T ss_pred HHHHHHHh-cCCCEEEEecCccccchhHHHhcccccCCCCHHHHHHHHHHHHHHHHHCCC-EEEeccceeC
Confidence 88886665 99999999976 332100 0 00000 0000001111 234455666776 5699999854
No 146
>PF14502 HTH_41: Helix-turn-helix domain
Probab=32.99 E-value=46 Score=21.93 Aligned_cols=30 Identities=13% Similarity=0.179 Sum_probs=24.7
Q ss_pred HHHHHHHHHhcCCC--hHHHHHHHHHhCCCCe
Q 018374 262 YARVENLAKRNKCT--PAQLSLAWLLRQGDDI 291 (357)
Q Consensus 262 ~~~l~~ia~~~g~s--~~q~al~~~l~~~~v~ 291 (357)
++.+.+++++++++ ..|-||+++-..+.|.
T Consensus 6 i~tI~e~~~~~~vs~GtiQ~Alk~Le~~gaI~ 37 (48)
T PF14502_consen 6 IPTISEYSEKFGVSRGTIQNALKFLEENGAIK 37 (48)
T ss_pred cCCHHHHHHHhCcchhHHHHHHHHHHHCCcEE
Confidence 45788999999887 6899999999888543
No 147
>PRK02901 O-succinylbenzoate synthase; Provisional
Probab=32.59 E-value=4.1e+02 Score=25.13 Aligned_cols=71 Identities=14% Similarity=0.120 Sum_probs=51.2
Q ss_pred HHHHHHHHHcCccc-eEecCCCCHHHHHHHhccCCceEEeccccccccchhhhHHHHHHHhCCceeecccCccc
Q 018374 155 IGELKMLVVEGKIK-YIGLSEASPDTIRRAHAVHPITAVQMEWSLLTRDIEEEIIPLCRELGIGIVPYSPLGRG 227 (357)
Q Consensus 155 ~~aL~~L~~~G~ir-~iGvS~~~~~~l~~~~~~~~~~~~q~~~n~~~~~~~~~~~~~~~~~gi~v~a~spl~~G 227 (357)
++.|.+++++-.+. +.|=|-++.+.+.+++.....+++|+..+.+-. -.+.+..|+++||.++..|.+.++
T Consensus 173 ~~~la~Lr~~~~vPIA~DEs~~~~~d~~~l~~~~a~dvi~ik~~~~GG--it~~lkiA~~~gi~v~v~s~~es~ 244 (327)
T PRK02901 173 VEELAELRRRVGVPIAADESIRRAEDPLRVARAGAADVAVLKVAPLGG--VRAALDIAEQIGLPVVVSSALDTS 244 (327)
T ss_pred HHHHHHHHHhCCCCEEeCCCCCCHHHHHHHHHcCCCCEEEeCcchhCC--HHHHHHHHHHcCCcEEEeCCcccH
Confidence 67777777764443 334455778888888888888999988766543 146777899999999988766544
No 148
>TIGR00742 yjbN tRNA dihydrouridine synthase A. Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase.
Probab=32.40 E-value=4.3e+02 Score=24.85 Aligned_cols=143 Identities=14% Similarity=0.129 Sum_probs=80.6
Q ss_pred CHHHHHHHHHHHHHcCCCeEe----------CccCcCCC--chHHHHHHHHhcC-CCCCeEEEeeeeeccCCCcccccCC
Q 018374 40 SEEDGISIIKHAFNKGITFFD----------TADVYGAH--ANEVLVGKVLKQL-PRKKIQLASKFGVVSMAPTSVIVKG 106 (357)
Q Consensus 40 ~~~~~~~~l~~A~~~Gin~~D----------tA~~Yg~g--~sE~~lG~al~~~-~R~~~~I~tK~~~~~~~~~~~~~~~ 106 (357)
+.++..++.+.+.+.|+..|| +...||.. ..-+.+.+.++.. ..-++-|+.|+...... ..
T Consensus 65 ~p~~~~~aA~~~~~~g~d~IDlN~GCP~~~v~~~g~Gs~Ll~~p~~~~~iv~av~~~~~~PVsvKiR~g~~~------~~ 138 (318)
T TIGR00742 65 DPNDLAKCAKIAEKRGYDEINLNVGCPSDRVQNGNFGACLMGNADLVADCVKAMQEAVNIPVTVKHRIGIDP------LD 138 (318)
T ss_pred CHHHHHHHHHHHHhCCCCEEEEECCCCHHHhCCCCeehHhhcCHHHHHHHHHHHHHHhCCCeEEEEecCCCC------cc
Confidence 778888888888889999999 44455542 2234455555553 11245688888643211 11
Q ss_pred CHHHHHHHHHHHHhHhCCCcccEEEeecCCC-CCCccccccCCCChhHHHHHHHHHHHcC-ccceEecCC-CCHHHHHHH
Q 018374 107 TPEYVRSCCEASLKRLGVDYIDLYYQHRVDP-SVPIEDTVCDSLPTSLNIGELKMLVVEG-KIKYIGLSE-ASPDTIRRA 183 (357)
Q Consensus 107 ~~~~i~~~v~~sL~~Lg~d~iDl~~lH~pd~-~~~~~~~~~~~~~~~~~~~aL~~L~~~G-~ir~iGvS~-~~~~~l~~~ 183 (357)
+.+... .+-+.++..| +|.+-+|.-.. ............. .--|+.+.++++.- .|--||..+ ++.+...+.
T Consensus 139 ~~~~~~-~~~~~l~~~G---~~~itvHgRt~~~qg~sg~~~~~~~-~~~~~~i~~vk~~~~~ipVi~NGdI~s~~da~~~ 213 (318)
T TIGR00742 139 SYEFLC-DFVEIVSGKG---CQNFIVHARKAWLSGLSPKENREIP-PLRYERVYQLKKDFPHLTIEINGGIKNSEQIKQH 213 (318)
T ss_pred hHHHHH-HHHHHHHHcC---CCEEEEeCCchhhcCCCccccccCC-chhHHHHHHHHHhCCCCcEEEECCcCCHHHHHHH
Confidence 222222 3334555566 78888998642 1111000000000 01277777888765 677788776 577777777
Q ss_pred hccCCceEEecc
Q 018374 184 HAVHPITAVQME 195 (357)
Q Consensus 184 ~~~~~~~~~q~~ 195 (357)
+. ..+.+|+-
T Consensus 214 l~--g~dgVMig 223 (318)
T TIGR00742 214 LS--HVDGVMVG 223 (318)
T ss_pred Hh--CCCEEEEC
Confidence 74 46777663
No 149
>PRK08195 4-hyroxy-2-oxovalerate/4-hydroxy-2-oxopentanoic acid aldolase,; Validated
Probab=32.20 E-value=4.5e+02 Score=24.96 Aligned_cols=111 Identities=21% Similarity=0.208 Sum_probs=59.6
Q ss_pred cCCCHHHHHHHHHHHHhHhCCCcccEEEeecCCCCCCccccccCCCChhHHHHHHHHHHHc-CccceEecCC---CCHHH
Q 018374 104 VKGTPEYVRSCCEASLKRLGVDYIDLYYQHRVDPSVPIEDTVCDSLPTSLNIGELKMLVVE-GKIKYIGLSE---ASPDT 179 (357)
Q Consensus 104 ~~~~~~~i~~~v~~sL~~Lg~d~iDl~~lH~pd~~~~~~~~~~~~~~~~~~~~aL~~L~~~-G~ir~iGvS~---~~~~~ 179 (357)
+.++.+.+.+-++ .|.+.|+++|.+-+.-......- . . .......++.++.+++. ...+...+.. .+.+.
T Consensus 20 ~~f~~~~~~~i~~-~L~~aGv~~IEvg~~~g~g~~s~-~-~---g~~~~~~~e~i~~~~~~~~~~~~~~ll~pg~~~~~d 93 (337)
T PRK08195 20 HQYTLEQVRAIAR-ALDAAGVPVIEVTHGDGLGGSSF-N-Y---GFGAHTDEEYIEAAAEVVKQAKIAALLLPGIGTVDD 93 (337)
T ss_pred CccCHHHHHHHHH-HHHHcCCCEEEeecCCCCCCccc-c-C---CCCCCCHHHHHHHHHHhCCCCEEEEEeccCcccHHH
Confidence 3566776665555 59999999999864321110000 0 0 00000015566666433 3344444332 25667
Q ss_pred HHHHhccCCceEEeccccccccchhhhHHHHHHHhCCceeec
Q 018374 180 IRRAHAVHPITAVQMEWSLLTRDIEEEIIPLCRELGIGIVPY 221 (357)
Q Consensus 180 l~~~~~~~~~~~~q~~~n~~~~~~~~~~~~~~~~~gi~v~a~ 221 (357)
++.+.+. .++.+.+.++.-..+.-.+.+++++++|+.+...
T Consensus 94 l~~a~~~-gvd~iri~~~~~e~~~~~~~i~~ak~~G~~v~~~ 134 (337)
T PRK08195 94 LKMAYDA-GVRVVRVATHCTEADVSEQHIGLARELGMDTVGF 134 (337)
T ss_pred HHHHHHc-CCCEEEEEEecchHHHHHHHHHHHHHCCCeEEEE
Confidence 7776654 4565555443333223367889999999887664
No 150
>cd02070 corrinoid_protein_B12-BD B12 binding domain of corrinoid proteins. A family of small methanogenic corrinoid proteins that bind methyl-Co(III) 5-hydroxybenzimidazolylcobamide as a cofactor. They play a role on the methanogenesis from trimethylamine, dimethylamine or monomethylamine, which is initiated by a series of corrinoid-dependent methyltransferases.
Probab=32.06 E-value=3.3e+02 Score=23.46 Aligned_cols=145 Identities=17% Similarity=0.147 Sum_probs=80.0
Q ss_pred CHHHHHHHHHHHHHcCCCeEeCccCcCCCchHHHHHHHHhcC----CCCCeEEEeeeeeccCCCcccccCCCHHHHHHHH
Q 018374 40 SEEDGISIIKHAFNKGITFFDTADVYGAHANEVLVGKVLKQL----PRKKIQLASKFGVVSMAPTSVIVKGTPEYVRSCC 115 (357)
Q Consensus 40 ~~~~~~~~l~~A~~~Gin~~DtA~~Yg~g~sE~~lG~al~~~----~R~~~~I~tK~~~~~~~~~~~~~~~~~~~i~~~v 115 (357)
|.+++.+++..+++.|++..| .| +..+..+++.. .+++++++-= .+..+.+++.+
T Consensus 9 D~~~~~~~v~~~l~~g~~~~~---i~-----~~~l~p~m~~vG~~w~~~~i~va~e-------------~~as~~~~~~l 67 (201)
T cd02070 9 DEEETVELVKKALEAGIDPQD---II-----EEGLAPGMDIVGDKYEEGEIFVPEL-------------LMAADAMKAGL 67 (201)
T ss_pred CHHHHHHHHHHHHHcCCCHHH---HH-----HHHHHHHHHHHHHHHccCCeeHHHH-------------HHHHHHHHHHH
Confidence 789999999999999976554 22 33444444432 3344443321 12334445555
Q ss_pred HHHHhHhCCCcc---cEEEeecCCCCCCccccccCCCChhHHHHHHHHHHHcCc-cceEecCCCCHHHHHHHhccCCceE
Q 018374 116 EASLKRLGVDYI---DLYYQHRVDPSVPIEDTVCDSLPTSLNIGELKMLVVEGK-IKYIGLSEASPDTIRRAHAVHPITA 191 (357)
Q Consensus 116 ~~sL~~Lg~d~i---Dl~~lH~pd~~~~~~~~~~~~~~~~~~~~aL~~L~~~G~-ir~iGvS~~~~~~l~~~~~~~~~~~ 191 (357)
......+..... --+++-.+.-+.+. .+..=.-.-|+..|. |.++| .+.+.+.+.+.+....+++
T Consensus 68 ~~l~~~~~~~~~~~~~~vl~~~~~gd~H~----------lG~~~v~~~l~~~G~~vi~lG-~~~p~~~l~~~~~~~~~d~ 136 (201)
T cd02070 68 DLLKPLLGKSKSAKKGKVVIGTVEGDIHD----------IGKNLVATMLEANGFEVIDLG-RDVPPEEFVEAVKEHKPDI 136 (201)
T ss_pred HHHHHHHhhcCCCCCCeEEEEecCCccch----------HHHHHHHHHHHHCCCEEEECC-CCCCHHHHHHHHHHcCCCE
Confidence 544444433221 12333333222111 111222334566775 35567 5567888888777777888
Q ss_pred Eeccccccccch-hhhHHHHHHHhCC
Q 018374 192 VQMEWSLLTRDI-EEEIIPLCRELGI 216 (357)
Q Consensus 192 ~q~~~n~~~~~~-~~~~~~~~~~~gi 216 (357)
+-+.++....-. -.++++.+++.+.
T Consensus 137 v~lS~~~~~~~~~~~~~i~~lr~~~~ 162 (201)
T cd02070 137 LGLSALMTTTMGGMKEVIEALKEAGL 162 (201)
T ss_pred EEEeccccccHHHHHHHHHHHHHCCC
Confidence 888776555432 2678888888754
No 151
>TIGR01496 DHPS dihydropteroate synthase. This model represents dihydropteroate synthase, the enzyme that catalyzes the second to last step in folic acid biosynthesis. The gene is usually designated folP (folic acid biosynthsis) or sul (sulfanilamide resistance). This model represents one branch of the family of pterin-binding enzymes (pfam00809) and of a cluster of dihydropteroate synthase and related enzymes (COG0294). Other members of pfam00809 and COG0294 are represented by TIGR00284.
Probab=31.75 E-value=3.9e+02 Score=24.20 Aligned_cols=104 Identities=15% Similarity=0.088 Sum_probs=62.3
Q ss_pred CCHHHHHHHHHHHHhHhCCCcccEEE-eecCCCCCCccccccCCCChhHHHHHHHHHHHc-CccceEecCCCCHHHHHHH
Q 018374 106 GTPEYVRSCCEASLKRLGVDYIDLYY-QHRVDPSVPIEDTVCDSLPTSLNIGELKMLVVE-GKIKYIGLSEASPDTIRRA 183 (357)
Q Consensus 106 ~~~~~i~~~v~~sL~~Lg~d~iDl~~-lH~pd~~~~~~~~~~~~~~~~~~~~aL~~L~~~-G~ir~iGvS~~~~~~l~~~ 183 (357)
.+++.+.+.+++.+ .=|.++||+-- --+|+...-..+. .+......++.+++. +. -+.+-+++++.++++
T Consensus 20 ~~~~~~~~~a~~~~-~~GA~iIDIG~~st~p~~~~i~~~~-----E~~rl~~~v~~~~~~~~~--plsiDT~~~~vi~~a 91 (257)
T TIGR01496 20 LSVDKAVAHAERML-EEGADIIDVGGESTRPGADRVSPEE-----ELNRVVPVIKALRDQPDV--PISVDTYRAEVARAA 91 (257)
T ss_pred CCHHHHHHHHHHHH-HCCCCEEEECCCCCCCCCCCCCHHH-----HHHHHHHHHHHHHhcCCC--eEEEeCCCHHHHHHH
Confidence 46666666666554 56889999931 1223221101110 011235556666665 43 388889999999999
Q ss_pred hccCCceEEeccccccccchhhhHHHHHHHhCCceeecc
Q 018374 184 HAVHPITAVQMEWSLLTRDIEEEIIPLCRELGIGIVPYS 222 (357)
Q Consensus 184 ~~~~~~~~~q~~~n~~~~~~~~~~~~~~~~~gi~v~a~s 222 (357)
++.+..-++ ..+... ..++++.++++|..++.+.
T Consensus 92 l~~G~~iIN--sis~~~---~~~~~~l~~~~~~~vV~m~ 125 (257)
T TIGR01496 92 LEAGADIIN--DVSGGQ---DPAMLEVAAEYGVPLVLMH 125 (257)
T ss_pred HHcCCCEEE--ECCCCC---CchhHHHHHHcCCcEEEEe
Confidence 987432222 223332 3478999999999999853
No 152
>PRK09427 bifunctional indole-3-glycerol phosphate synthase/phosphoribosylanthranilate isomerase; Provisional
Probab=31.63 E-value=81 Score=31.38 Aligned_cols=65 Identities=17% Similarity=0.215 Sum_probs=42.2
Q ss_pred HhHhCCCcccEEEeecCCCCCCc-cccccCCCChhHHHHHHHHHHHcCccceEecC-CCCHHHHHHHhccCCceEEeccc
Q 018374 119 LKRLGVDYIDLYYQHRVDPSVPI-EDTVCDSLPTSLNIGELKMLVVEGKIKYIGLS-EASPDTIRRAHAVHPITAVQMEW 196 (357)
Q Consensus 119 L~~Lg~d~iDl~~lH~pd~~~~~-~~~~~~~~~~~~~~~aL~~L~~~G~ir~iGvS-~~~~~~l~~~~~~~~~~~~q~~~ 196 (357)
...+|+|++-+++... ....+ .+. .+.+.... + ++.+||- |-+++.+.++.+...++++|++-
T Consensus 273 a~~~GaD~lGfIf~~~--SpR~V~~~~----------a~~i~~~l--~-v~~VgVfv~~~~~~i~~i~~~~~lD~vQLHG 337 (454)
T PRK09427 273 AYDAGAVYGGLIFVEK--SPRYVSLEQ----------AQEIIAAA--P-LRYVGVFRNADIEDIVDIAKQLSLAAVQLHG 337 (454)
T ss_pred HHhCCCCEEeeEeCCC--CCCCCCHHH----------HHHHHHhC--C-CCEEEEEeCCCHHHHHHHHHHcCCCEEEeCC
Confidence 4458999988864332 22112 111 23332222 2 8899997 67899999999999999999976
Q ss_pred cc
Q 018374 197 SL 198 (357)
Q Consensus 197 n~ 198 (357)
+-
T Consensus 338 ~e 339 (454)
T PRK09427 338 DE 339 (454)
T ss_pred CC
Confidence 43
No 153
>cd07937 DRE_TIM_PC_TC_5S Pyruvate carboxylase and Transcarboxylase 5S, carboxyltransferase domain. This family includes the carboxyltransferase domains of pyruvate carboxylase (PC) and the transcarboxylase (TC) 5S subunit. Transcarboxylase 5S is a cobalt-dependent metalloenzyme subunit of the biotin-dependent transcarboxylase multienzyme complex. Transcarboxylase 5S transfers carbon dioxide from the 1.3S biotin to pyruvate in the second of two carboxylation reactions catalyzed by TC. The first reaction involves the transfer of carbon dioxide from methylmalonyl-CoA to the 1.3S biotin, and is catalyzed by the 12S subunit. These two steps allow a carboxylate group to be transferred from oxaloacetate to propionyl-CoA to yield pyruvate and methylmalonyl-CoA. The catalytic domain of transcarboxylase 5S has a canonical TIM-barrel fold with a large C-terminal extension that forms a funnel leading to the active site. Transcarboxylase 5S forms a homodimer and there are six dimers per complex
Probab=31.52 E-value=4.1e+02 Score=24.30 Aligned_cols=123 Identities=12% Similarity=0.069 Sum_probs=62.6
Q ss_pred CCHHHHHHHHHHHHHcCCCeEeCccCc--------CCCchHHHHHHHHhcCCCCCeEEEeeeeeccCCCcccccCCCHHH
Q 018374 39 VSEEDGISIIKHAFNKGITFFDTADVY--------GAHANEVLVGKVLKQLPRKKIQLASKFGVVSMAPTSVIVKGTPEY 110 (357)
Q Consensus 39 ~~~~~~~~~l~~A~~~Gin~~DtA~~Y--------g~g~sE~~lG~al~~~~R~~~~I~tK~~~~~~~~~~~~~~~~~~~ 110 (357)
.+.++..++.....+.|+..|+....- -+...++.+..+.+..++.++.......... .+..-+..
T Consensus 18 ~~~~~~~~ia~~L~~~Gv~~iE~G~~a~~~~~~~~~~~~~~e~i~~~~~~~~~~~l~~~~r~~~~~------~~~~~p~~ 91 (275)
T cd07937 18 MRTEDMLPIAEALDEAGFFSLEVWGGATFDVCMRFLNEDPWERLRELRKAMPNTPLQMLLRGQNLV------GYRHYPDD 91 (275)
T ss_pred ccHHHHHHHHHHHHHcCCCEEEccCCcchhhhccccCCCHHHHHHHHHHhCCCCceehhccccccc------CccCCCcH
Confidence 477888999999999999999987421 1222345554444333444444333321000 00111222
Q ss_pred -HHHHHHHHHhHhCCCcccEEEeecCCCCCCccccccCCCChhHHHHHHHHHHHcCccceEec-----CCCCHHHHHHH
Q 018374 111 -VRSCCEASLKRLGVDYIDLYYQHRVDPSVPIEDTVCDSLPTSLNIGELKMLVVEGKIKYIGL-----SEASPDTIRRA 183 (357)
Q Consensus 111 -i~~~v~~sL~~Lg~d~iDl~~lH~pd~~~~~~~~~~~~~~~~~~~~aL~~L~~~G~ir~iGv-----S~~~~~~l~~~ 183 (357)
.+..++.+. ..|++.|-+ -. +..+++.. .++++..++.|+.-.+.+ +.++++.+.++
T Consensus 92 ~~~~di~~~~-~~g~~~iri---~~--~~~~~~~~----------~~~i~~ak~~G~~v~~~i~~~~~~~~~~~~~~~~ 154 (275)
T cd07937 92 VVELFVEKAA-KNGIDIFRI---FD--ALNDVRNL----------EVAIKAVKKAGKHVEGAICYTGSPVHTLEYYVKL 154 (275)
T ss_pred HHHHHHHHHH-HcCCCEEEE---ee--cCChHHHH----------HHHHHHHHHCCCeEEEEEEecCCCCCCHHHHHHH
Confidence 233333333 335444333 22 22234444 778888899996433333 34566665554
No 154
>PRK08599 coproporphyrinogen III oxidase; Provisional
Probab=31.44 E-value=1.8e+02 Score=27.84 Aligned_cols=69 Identities=12% Similarity=0.087 Sum_probs=38.5
Q ss_pred CCHHHHHHHHHHHHhHhCCCcccEEEeecCCCCCCccccc--------cCCCChhHHHHHHHHHHHcCccceEecCCCCH
Q 018374 106 GTPEYVRSCCEASLKRLGVDYIDLYYQHRVDPSVPIEDTV--------CDSLPTSLNIGELKMLVVEGKIKYIGLSEASP 177 (357)
Q Consensus 106 ~~~~~i~~~v~~sL~~Lg~d~iDl~~lH~pd~~~~~~~~~--------~~~~~~~~~~~aL~~L~~~G~ir~iGvS~~~~ 177 (357)
-+.+.+.+.++.. .+|+.+++.+|.+. +.+.++..... .......---.+++.|.+.|.. .+++++|..
T Consensus 164 qt~~~~~~~l~~~-~~l~~~~i~~y~l~-~~pgT~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~Gy~-~~~~~~fa~ 240 (377)
T PRK08599 164 QTIEDFKESLAKA-LALDIPHYSAYSLI-LEPKTVFYNLMRKGKLRLPGEDLEAEMYEYLMDEMEAHGFH-QYEISNFAK 240 (377)
T ss_pred CCHHHHHHHHHHH-HccCCCEEeeecee-ecCCChhHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHcCCc-EeeeeeeeC
Confidence 4778888888764 56999999888653 22221111000 0000111123466677778864 588888853
No 155
>PRK05799 coproporphyrinogen III oxidase; Provisional
Probab=31.40 E-value=1.8e+02 Score=27.78 Aligned_cols=27 Identities=22% Similarity=0.137 Sum_probs=20.6
Q ss_pred CCHHHHHHHHHHHHhHhCCCcccEEEee
Q 018374 106 GTPEYVRSCCEASLKRLGVDYIDLYYQH 133 (357)
Q Consensus 106 ~~~~~i~~~v~~sL~~Lg~d~iDl~~lH 133 (357)
-+.+.+.+.++..+ .|+.+++.+|.+.
T Consensus 163 qt~e~~~~~l~~~~-~l~~~~is~y~l~ 189 (374)
T PRK05799 163 QTLEDWKETLEKVV-ELNPEHISCYSLI 189 (374)
T ss_pred CCHHHHHHHHHHHH-hcCCCEEEEeccE
Confidence 46788888887775 4888988888754
No 156
>cd02810 DHOD_DHPD_FMN Dihydroorotate dehydrogenase (DHOD) and Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass its homodimeric interface twice. Two of
Probab=31.27 E-value=4.1e+02 Score=24.22 Aligned_cols=141 Identities=17% Similarity=0.147 Sum_probs=80.1
Q ss_pred CHHHHHHHHHHHHHcCCCeEeCc---cCcCCC----chHHHHHHHHhcCCCC-CeEEEeeeeeccCCCcccccCCCHHHH
Q 018374 40 SEEDGISIIKHAFNKGITFFDTA---DVYGAH----ANEVLVGKVLKQLPRK-KIQLASKFGVVSMAPTSVIVKGTPEYV 111 (357)
Q Consensus 40 ~~~~~~~~l~~A~~~Gin~~DtA---~~Yg~g----~sE~~lG~al~~~~R~-~~~I~tK~~~~~~~~~~~~~~~~~~~i 111 (357)
+.++..+..+.+.+.|+..|+.. ++...+ ...+.+.+.++...+. ++-|+.|+... .+.+.+
T Consensus 109 ~~~~~~~~a~~~~~~G~d~ielN~~cP~~~~~~~~~~~~~~~~eiv~~vr~~~~~pv~vKl~~~----------~~~~~~ 178 (289)
T cd02810 109 SKEDYVELARKIERAGAKALELNLSCPNVGGGRQLGQDPEAVANLLKAVKAAVDIPLLVKLSPY----------FDLEDI 178 (289)
T ss_pred CHHHHHHHHHHHHHhCCCEEEEEcCCCCCCCCcccccCHHHHHHHHHHHHHccCCCEEEEeCCC----------CCHHHH
Confidence 56788889999999999999853 222211 2345555666553211 56788898753 244455
Q ss_pred HHHHHHHHhHhCCCcccEEEeecCCCCCCcc--------ccccC----CCChhHHHHHHHHHHHcC--ccceEecCCC-C
Q 018374 112 RSCCEASLKRLGVDYIDLYYQHRVDPSVPIE--------DTVCD----SLPTSLNIGELKMLVVEG--KIKYIGLSEA-S 176 (357)
Q Consensus 112 ~~~v~~sL~~Lg~d~iDl~~lH~pd~~~~~~--------~~~~~----~~~~~~~~~aL~~L~~~G--~ir~iGvS~~-~ 176 (357)
.+.++ .++..|+ |.+.+|+-....... ..... .....-+++.+.++++.= .+--||+... +
T Consensus 179 ~~~a~-~l~~~Ga---d~i~~~~~~~~~~~~~~~~~~~~~~~~~g~sg~~~~~~~~~~v~~i~~~~~~~ipiia~GGI~~ 254 (289)
T cd02810 179 VELAK-AAERAGA---DGLTAINTISGRVVDLKTVGPGPKRGTGGLSGAPIRPLALRWVARLAARLQLDIPIIGVGGIDS 254 (289)
T ss_pred HHHHH-HHHHcCC---CEEEEEcccCccceecccCccccCCCCCccCcHHHHHHHHHHHHHHHHhcCCCCCEEEECCCCC
Confidence 54444 4566774 555666431110000 00000 000112477777777754 6778888875 5
Q ss_pred HHHHHHHhccCCceEEecc
Q 018374 177 PDTIRRAHAVHPITAVQME 195 (357)
Q Consensus 177 ~~~l~~~~~~~~~~~~q~~ 195 (357)
.+.+.+++... .+.+|+-
T Consensus 255 ~~da~~~l~~G-Ad~V~vg 272 (289)
T cd02810 255 GEDVLEMLMAG-ASAVQVA 272 (289)
T ss_pred HHHHHHHHHcC-ccHheEc
Confidence 77888877644 6666653
No 157
>TIGR01927 menC_gamma/gm+ o-succinylbenzoic acid (OSB) synthetase. This model describes the enzyme o-succinylbenzoic acid synthetase (menC) that is involved in one of the steps of the menaquinone biosynthesis pathway. It takes SHCHC and makes it into 2-succinylbenzoate. Included in this model are gamma proteobacteria and archaea. Many of the com-names of the proteins identified by the model are identified as O-succinylbenzoyl-CoA synthase in error.
Probab=31.21 E-value=4.4e+02 Score=24.54 Aligned_cols=73 Identities=10% Similarity=0.007 Sum_probs=51.7
Q ss_pred HHHHHHHHcCccc-eEecCCCCHHHHHHHhccCCceEEecccccccc-chhhhHHHHHHHhCCceeecccCcccc
Q 018374 156 GELKMLVVEGKIK-YIGLSEASPDTIRRAHAVHPITAVQMEWSLLTR-DIEEEIIPLCRELGIGIVPYSPLGRGL 228 (357)
Q Consensus 156 ~aL~~L~~~G~ir-~iGvS~~~~~~l~~~~~~~~~~~~q~~~n~~~~-~~~~~~~~~~~~~gi~v~a~spl~~G~ 228 (357)
+.+..++++-.+. +.|=|-++.+.+.++++....+++|+.....-. ....++.+.|+.+||.++..+.+..|+
T Consensus 196 ~~~~~l~~~~~~Pia~dEs~~~~~d~~~~~~~~~~d~i~ik~~~~GGi~~~~~i~~~a~~~gi~~~~~~~~es~i 270 (307)
T TIGR01927 196 DEMSAFSEATGTAIALDESLWELPQLADEYGPGWRGALVIKPAIIGSPAKLRDLAQKAHRLGLQAVFSSVFESSI 270 (307)
T ss_pred HHHHHHHHhCCCCEEeCCCcCChHHHHHHHhcCCCceEEECchhcCCHHHHHHHHHHHHHcCCCEEEECccchHH
Confidence 5666676664333 445566788889999888778888887665432 123689999999999999876665543
No 158
>PF11020 DUF2610: Domain of unknown function (DUF2610); InterPro: IPR021277 This family is conserved in Proteobacteria. One member is annotated as being elongation factor P but this could not be confirmed.
Probab=31.17 E-value=1.1e+02 Score=22.53 Aligned_cols=29 Identities=24% Similarity=0.228 Sum_probs=24.3
Q ss_pred hhhHHHHHHHHHHHHhcCCChHHHHHHHH
Q 018374 256 GKNKQIYARVENLAKRNKCTPAQLSLAWL 284 (357)
Q Consensus 256 ~~~~~~~~~l~~ia~~~g~s~~q~al~~~ 284 (357)
+...+.+..|.++|++.|++..++|.-.+
T Consensus 48 ~~V~~sl~kL~~La~~N~v~feeLc~YAL 76 (82)
T PF11020_consen 48 EKVMDSLSKLYKLAKENNVSFEELCVYAL 76 (82)
T ss_pred HHHHHHHHHHHHHHHHcCCCHHHHHHHHH
Confidence 45678889999999999999999886543
No 159
>PRK12569 hypothetical protein; Provisional
Probab=30.91 E-value=1.3e+02 Score=27.23 Aligned_cols=85 Identities=14% Similarity=0.172 Sum_probs=56.9
Q ss_pred eeccccccCCCCCCCCHHHHHHHHHHHHHcCCCeEeCccCcCCCchHHHHHHHHhcCCCCCeEEEeeeeeccCCC-cccc
Q 018374 25 GFGCMGLTGMYNSPVSEEDGISIIKHAFNKGITFFDTADVYGAHANEVLVGKVLKQLPRKKIQLASKFGVVSMAP-TSVI 103 (357)
Q Consensus 25 glG~~~~g~~~~~~~~~~~~~~~l~~A~~~Gin~~DtA~~Yg~g~sE~~lG~al~~~~R~~~~I~tK~~~~~~~~-~~~~ 103 (357)
+||.|.+|.. -.++...++..|- |=|.-|.| ....+-+.++-.....+.|...-++.+..+ |+..
T Consensus 14 sfG~~~~g~~-----~D~~lmp~ItsaN------IACG~HAG---Dp~~M~~tv~lA~~~~V~IGAHPsyPD~~gFGRr~ 79 (245)
T PRK12569 14 GFGPWRIGDG-----VDEALMPLISSAN------IATGFHAG---DPNIMRRTVELAKAHGVGIGAHPGFRDLVGFGRRH 79 (245)
T ss_pred CCCCcCCCCc-----cHHHHHHHhhhHH------HhccccCC---CHHHHHHHHHHHHHcCCEeccCCCCCcCCCCCCCC
Confidence 6788887520 1566777777763 33444777 567777777765677777777766554433 4445
Q ss_pred cCCCHHHHHHHHHHHHhHhC
Q 018374 104 VKGTPEYVRSCCEASLKRLG 123 (357)
Q Consensus 104 ~~~~~~~i~~~v~~sL~~Lg 123 (357)
.+.+++.++.++...+..|+
T Consensus 80 m~~s~~el~~~v~yQigaL~ 99 (245)
T PRK12569 80 INASPQELVNDVLYQLGALR 99 (245)
T ss_pred CCCCHHHHHHHHHHHHHHHH
Confidence 57899999999888777774
No 160
>KOG1720 consensus Protein tyrosine phosphatase CDC14 [Defense mechanisms]
Probab=30.90 E-value=3.8e+02 Score=23.75 Aligned_cols=64 Identities=9% Similarity=0.007 Sum_probs=33.0
Q ss_pred HHHHHHHHHcCccceEecCCCCHHHHHHHhccCCceEEecccc--------------cccc---chhhhHHHHHHHhCCc
Q 018374 155 IGELKMLVVEGKIKYIGLSEASPDTIRRAHAVHPITAVQMEWS--------------LLTR---DIEEEIIPLCRELGIG 217 (357)
Q Consensus 155 ~~aL~~L~~~G~ir~iGvS~~~~~~l~~~~~~~~~~~~q~~~n--------------~~~~---~~~~~~~~~~~~~gi~ 217 (357)
......+++.|. +-+++++.++.+........+++-+.=+ +.+. .....++.+.++++++
T Consensus 20 ~~~~~r~~~~g~---l~~~~~~~~~ye~ye~ve~gdfnwI~p~~~i~f~~p~~~s~gi~~~f~~~~~~~~~~~~~~~~v~ 96 (225)
T KOG1720|consen 20 LYGVWKALQSGW---LDFSSFNVDEYEHYEAVENGDFNWIIPDRFIAFAGPHLKSRGIESGFPLHLPQPYIQYFKNNNVT 96 (225)
T ss_pred HHHHHHHHhccc---cchheecchhheeeeccCCCCcceeccchhhhhcCccccccchhhcccccCChhHHHHhhhcccc
Confidence 555666666665 5566677666665544322221111100 0000 0114677888888888
Q ss_pred eeec
Q 018374 218 IVPY 221 (357)
Q Consensus 218 v~a~ 221 (357)
.+..
T Consensus 97 s~vr 100 (225)
T KOG1720|consen 97 SIVR 100 (225)
T ss_pred eEEE
Confidence 7763
No 161
>TIGR00381 cdhD CO dehydrogenase/acetyl-CoA synthase, delta subunit. This is the small subunit of a heterodimer which catalyzes the reaction CO + H2O + Acceptor = CO2 + Reduced acceptor and is involved in the synthesis of acetyl-CoA from CO2 and H2.
Probab=30.50 E-value=5.2e+02 Score=25.16 Aligned_cols=109 Identities=19% Similarity=0.214 Sum_probs=61.2
Q ss_pred HHHHHHHHHHH-----------hHhCCCcccEEEeecCCCCCCccccccCCCChhHHHHHHHHHHHc-CccceEecC---
Q 018374 109 EYVRSCCEASL-----------KRLGVDYIDLYYQHRVDPSVPIEDTVCDSLPTSLNIGELKMLVVE-GKIKYIGLS--- 173 (357)
Q Consensus 109 ~~i~~~v~~sL-----------~~Lg~d~iDl~~lH~pd~~~~~~~~~~~~~~~~~~~~aL~~L~~~-G~ir~iGvS--- 173 (357)
+.+++.++... +.++ +|++.||.-..+....+. .-.+..+..++..+. +.=--|+=|
T Consensus 128 ~~i~~~~~dV~~dP~~wak~~V~~~~---aD~Ialr~~S~DP~~~d~-----~~~e~a~~vk~V~~av~vPLIL~gsg~~ 199 (389)
T TIGR00381 128 KPIRMHFEDVMEDPAEWARKCVKEFG---ADMVTIHLISTDPKLDDK-----SPSEAAKVLEDVLQAVDVPIVIGGSGNP 199 (389)
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHhC---CCEEEEEecCCCcccccc-----CHHHHHHHHHHHHHhCCCCEEEeCCCCC
Confidence 56777766655 5555 788888886433221111 111224445544332 222222222
Q ss_pred CCCHHHHHHHhccCCc-eEEeccccccccchhhhHHHHHHHhCCceeecccCccc
Q 018374 174 EASPDTIRRAHAVHPI-TAVQMEWSLLTRDIEEEIIPLCRELGIGIVPYSPLGRG 227 (357)
Q Consensus 174 ~~~~~~l~~~~~~~~~-~~~q~~~n~~~~~~~~~~~~~~~~~gi~v~a~spl~~G 227 (357)
..+++.+++.++...= .+....-|.=+ + ..++...|+++|..+++++|..-|
T Consensus 200 ~kD~eVLeaaLe~~~G~kpLL~SAt~e~-N-y~~ia~lAk~yg~~Vvv~s~~Din 252 (389)
T TIGR00381 200 EKDPLVLEKAAEVAEGERCLLASANLDL-D-YEKIANAAKKYGHVVLSWTIMDIN 252 (389)
T ss_pred cCCHHHHHHHHHHhCCCCcEEEecCchh-h-HHHHHHHHHHhCCeEEEEcCCcHH
Confidence 4588999988776321 22322222221 2 368999999999999999988644
No 162
>TIGR03821 AblA_like_1 lysine-2,3-aminomutase-related protein. Members of this protein form a distinctive clade, homologous to lysine-2,3-aminomutase (of Bacillus, Clostridium, and methanogenic archaea) and likely similar in function. Members of this family are found in E. coli, Buchnera, Yersinia, etc.
Probab=30.39 E-value=4.7e+02 Score=24.61 Aligned_cols=93 Identities=18% Similarity=0.160 Sum_probs=53.9
Q ss_pred ccEEEeecCCCCCCccccccCCCChhHHHHHHHHHHHcCccceEecCC----CCHHH----HHHHhccCCceEE-ecccc
Q 018374 127 IDLYYQHRVDPSVPIEDTVCDSLPTSLNIGELKMLVVEGKIKYIGLSE----ASPDT----IRRAHAVHPITAV-QMEWS 197 (357)
Q Consensus 127 iDl~~lH~pd~~~~~~~~~~~~~~~~~~~~aL~~L~~~G~ir~iGvS~----~~~~~----l~~~~~~~~~~~~-q~~~n 197 (357)
+.-+.+-.-|+....+.. ..+-++.+..-..++.+|+.+ ..+.. +.+.++...+..+ ++++|
T Consensus 143 i~~VvltGGEPL~~~d~~---------L~~ll~~l~~i~~~~~iri~tr~~~~~p~rit~el~~~L~~~~~~~~~~~h~d 213 (321)
T TIGR03821 143 INEVILSGGDPLMAKDHR---------LDWLLNLLEQIPHLKRLRIHTRLPVVIPDRITSGLCDLLANSRLQTVLVVHIN 213 (321)
T ss_pred CCEEEEeCcccccCCchH---------HHHHHHHHHhCCCCcEEEEecCcceeeHHHhhHHHHHHHHhcCCcEEEEeeCC
Confidence 444556555554332222 156666777777888888753 32232 2223333444444 45666
Q ss_pred cccc--chhhhHHHHHHHhCCceeecccCcccc
Q 018374 198 LLTR--DIEEEIIPLCRELGIGIVPYSPLGRGL 228 (357)
Q Consensus 198 ~~~~--~~~~~~~~~~~~~gi~v~a~spl~~G~ 228 (357)
-... +...+.++.+++.||.+...+++..|.
T Consensus 214 h~~Ei~d~~~~ai~~L~~~Gi~v~~qtvllkgi 246 (321)
T TIGR03821 214 HANEIDAEVADALAKLRNAGITLLNQSVLLRGV 246 (321)
T ss_pred ChHhCcHHHHHHHHHHHHcCCEEEecceeeCCC
Confidence 4321 223567888999999999999998764
No 163
>TIGR01430 aden_deam adenosine deaminase. This family includes the experimentally verified adenosine deaminases of mammals and E. coli. Other members of this family are predicted also to be adenosine deaminase, an enzyme of nucleotide degradation. This family is distantly related to AMP deaminase.
Probab=30.36 E-value=4.5e+02 Score=24.43 Aligned_cols=156 Identities=13% Similarity=0.122 Sum_probs=71.3
Q ss_pred HHHHHHHHHHcCCCeEeCc--cC--cCCCch-HHHHH---HHHhcCCCCCeEEEeeeeeccCCCcccccCCCHHHHHHHH
Q 018374 44 GISIIKHAFNKGITFFDTA--DV--YGAHAN-EVLVG---KVLKQLPRKKIQLASKFGVVSMAPTSVIVKGTPEYVRSCC 115 (357)
Q Consensus 44 ~~~~l~~A~~~Gin~~DtA--~~--Yg~g~s-E~~lG---~al~~~~R~~~~I~tK~~~~~~~~~~~~~~~~~~~i~~~v 115 (357)
+...+..+++.|+.++|.- +. -+.|.+ ++++. +++++. ++++=|-.++...... ..+++.+++.+
T Consensus 74 ~~~~~~e~~~~Gv~y~E~r~~p~~~~~~g~~~~~~~~~~~~~i~~a-~~~~gi~~~li~~~~r------~~~~~~~~~~~ 146 (324)
T TIGR01430 74 AYEYVEKAAKDGVVYAEVFFDPQLHTNRGISPDTVVEAVLDGLDEA-ERDFGIKSRLILCGMR------HKQPEAAEETL 146 (324)
T ss_pred HHHHHHHHHHcCCEEEEEEeCccccccCCCCHHHHHHHHHHHHHHH-HHhcCCeEEEEEEEeC------CCCHHHHHHHH
Confidence 5677777888999999942 11 011222 33332 223221 1111111111111000 12467777777
Q ss_pred HHHHhHhCCCcccEEEeecCCCCCCccccccCCCChhHHHHHHHHHHHcCccceEecCCC-CHHHHHHHhccCCceEEec
Q 018374 116 EASLKRLGVDYIDLYYQHRVDPSVPIEDTVCDSLPTSLNIGELKMLVVEGKIKYIGLSEA-SPDTIRRAHAVHPITAVQM 194 (357)
Q Consensus 116 ~~sL~~Lg~d~iDl~~lH~pd~~~~~~~~~~~~~~~~~~~~aL~~L~~~G~ir~iGvS~~-~~~~l~~~~~~~~~~~~q~ 194 (357)
+..++ .+-+.+--+-++......+.+.. ...++..++.|.--.+=++.. +...+...+.....+.+--
T Consensus 147 ~~~~~-~~~~~vvg~~l~~~e~~~~~~~~----------~~~~~~A~~~g~~i~~Ha~E~~~~~~~~~~~~~~g~~ri~H 215 (324)
T TIGR01430 147 ELAKP-YKEQTIVGFGLAGDERGGPPPDF----------VRAFAIARELGLHLTVHAGELGGPESVREALDDLGATRIGH 215 (324)
T ss_pred HHHHh-hccCcEEEecCCCCCCCCCHHHH----------HHHHHHHHHCCCCeEEecCCCCChHHHHHHHHHcCchhcch
Confidence 77664 33222222233332222222222 566677777776555544433 2334444443222221111
Q ss_pred cccccccchhhhHHHHHHHhCCceee
Q 018374 195 EWSLLTRDIEEEIIPLCRELGIGIVP 220 (357)
Q Consensus 195 ~~n~~~~~~~~~~~~~~~~~gi~v~a 220 (357)
-+++ .. ..+.++.++++|+.+..
T Consensus 216 g~~l-~~--~~~~i~~l~~~gi~v~~ 238 (324)
T TIGR01430 216 GVRA-LE--DPELLKRLAQENITLEV 238 (324)
T ss_pred hhhh-cc--CHHHHHHHHHcCceEEE
Confidence 1111 11 24688999999988754
No 164
>PF00682 HMGL-like: HMGL-like of this family is not conserved in other members. are a sub-families of this Pfam.; InterPro: IPR000891 Pyruvate carboxylase (6.4.1.1 from EC) (PC), a member of the biotin-dependent enzyme family, is involved in the gluconeogenesis by mediating the carboxylation of pyruvate to oxaloacetate. Biotin-dependent carboxylase enzymes perform a two step reaction. Enzyme-bound biotin is first carboxylated by bicarbonate and ATP and the carboxyl group temporarily bound to biotin is subsequently transferred to an acceptor substrate such as pyruvate []. PC has three functional domains: a biotin carboxylase (BC) domain, a carboxyltransferase (CT) domain which perform the second part of the reaction and a biotinyl domain [, ]. The mechanism by which the carboxyl group is transferred from the carboxybiotin to the pyruvate is not well understood. The pyruvate carboxyltransferase domain is also found in other pyruvate binding enzymes and acetyl-CoA dependent enzymes suggesting that this domain can be associated with different enzymatic activities. This domain is found towards the N-terminal region of various aldolase enzymes. This N-terminal TIM barrel domain [] interacts with the C-terminal domain. The C-terminal DmpG_comm domain (IPR012425 from INTERPRO) is thought to promote heterodimerisation with members of IPR003361 from INTERPRO to form a bifunctional aldolase-dehydrogenase []. ; GO: 0003824 catalytic activity; PDB: 3MP5_E 3MP3_E 2CW6_E 3MP4_D 3HBL_A 3HB9_C 3HO8_A 3BG5_C 1YDN_B 3RMJ_A ....
Probab=30.15 E-value=1.8e+02 Score=25.63 Aligned_cols=98 Identities=23% Similarity=0.249 Sum_probs=53.2
Q ss_pred CCCHHHHHHHHHHHHhHhCCCcccEEEeecCCCCCCccccccCCCChhHHHHHHHHHHHcCccceEecCCCCHHHHHHHh
Q 018374 105 KGTPEYVRSCCEASLKRLGVDYIDLYYQHRVDPSVPIEDTVCDSLPTSLNIGELKMLVVEGKIKYIGLSEASPDTIRRAH 184 (357)
Q Consensus 105 ~~~~~~i~~~v~~sL~~Lg~d~iDl~~lH~pd~~~~~~~~~~~~~~~~~~~~aL~~L~~~G~ir~iGvS~~~~~~l~~~~ 184 (357)
.++.+...+-+ +.|.++|+++|.+- .|... +.. .+.++.+.+.... .+-.+++......++..+
T Consensus 10 ~~~~~~k~~i~-~~L~~~Gv~~iEvg---~~~~~---~~~-------~~~v~~~~~~~~~--~~~~~~~~~~~~~i~~~~ 73 (237)
T PF00682_consen 10 AFSTEEKLEIA-KALDEAGVDYIEVG---FPFAS---EDD-------FEQVRRLREALPN--ARLQALCRANEEDIERAV 73 (237)
T ss_dssp T--HHHHHHHH-HHHHHHTTSEEEEE---HCTSS---HHH-------HHHHHHHHHHHHS--SEEEEEEESCHHHHHHHH
T ss_pred CcCHHHHHHHH-HHHHHhCCCEEEEc---ccccC---HHH-------HHHhhhhhhhhcc--cccceeeeehHHHHHHHH
Confidence 35555555544 46999999999988 22111 111 1124555555555 344455556666666644
Q ss_pred c---cCCceEEeccccccc--c------------chhhhHHHHHHHhCCce
Q 018374 185 A---VHPITAVQMEWSLLT--R------------DIEEEIIPLCRELGIGI 218 (357)
Q Consensus 185 ~---~~~~~~~q~~~n~~~--~------------~~~~~~~~~~~~~gi~v 218 (357)
+ ...++.+.+..+.-+ . ..-.+.+.+++++|+.+
T Consensus 74 ~~~~~~g~~~i~i~~~~s~~~~~~~~~~~~~~~~~~~~~~v~~ak~~g~~v 124 (237)
T PF00682_consen 74 EAAKEAGIDIIRIFISVSDLHIRKNLNKSREEALERIEEAVKYAKELGYEV 124 (237)
T ss_dssp HHHHHTTSSEEEEEEETSHHHHHHHTCSHHHHHHHHHHHHHHHHHHTTSEE
T ss_pred HhhHhccCCEEEecCcccHHHHHHhhcCCHHHHHHHHHHHHHHHHhcCCce
Confidence 3 344454444333322 0 11157889999999998
No 165
>PRK06740 histidinol-phosphatase; Validated
Probab=29.74 E-value=4.9e+02 Score=24.63 Aligned_cols=24 Identities=21% Similarity=0.090 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHcCCCeEeCccC
Q 018374 41 EEDGISIIKHAFNKGITFFDTADV 64 (357)
Q Consensus 41 ~~~~~~~l~~A~~~Gin~~DtA~~ 64 (357)
.......+++|++.|+..|=-++|
T Consensus 60 ~~~~e~yv~~Ai~~G~~~ig~SdH 83 (331)
T PRK06740 60 TKWIDLYLEEALRKGIKEVGIVDH 83 (331)
T ss_pred cchHHHHHHHHHHCCCcEEEECCC
Confidence 345799999999999998854444
No 166
>cd03325 D-galactonate_dehydratase D-galactonate dehydratase catalyses the dehydration of galactonate to 2-keto-3-deoxygalactnate (KDGal), as part of the D-galactonate nonphosphorolytic catabolic Entner-Doudoroff pathway. D-galactonate dehydratase belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=29.67 E-value=4.9e+02 Score=24.66 Aligned_cols=68 Identities=12% Similarity=0.092 Sum_probs=52.1
Q ss_pred HHHHHHHHHcCccc-eEecCCCCHHHHHHHhccCCceEEecccccccc-chhhhHHHHHHHhCCceeecc
Q 018374 155 IGELKMLVVEGKIK-YIGLSEASPDTIRRAHAVHPITAVQMEWSLLTR-DIEEEIIPLCRELGIGIVPYS 222 (357)
Q Consensus 155 ~~aL~~L~~~G~ir-~iGvS~~~~~~l~~~~~~~~~~~~q~~~n~~~~-~~~~~~~~~~~~~gi~v~a~s 222 (357)
++.+.+|+++.-+. +.|=|.++.+.+..+++...++++|+.....-- ....++.++|+++||.++.++
T Consensus 216 ~~~~~~L~~~~~~pia~dEs~~~~~~~~~~~~~~~~d~v~~d~~~~GGit~~~~~~~lA~~~gi~~~~h~ 285 (352)
T cd03325 216 VEALAEIAARTTIPIATGERLFSRWDFKELLEDGAVDIIQPDISHAGGITELKKIAAMAEAYDVALAPHC 285 (352)
T ss_pred HHHHHHHHHhCCCCEEecccccCHHHHHHHHHhCCCCEEecCccccCCHHHHHHHHHHHHHcCCcEeccC
Confidence 78889998886665 445566799999999888888999987554321 123689999999999998654
No 167
>PRK07094 biotin synthase; Provisional
Probab=29.52 E-value=4.7e+02 Score=24.33 Aligned_cols=123 Identities=16% Similarity=0.215 Sum_probs=62.9
Q ss_pred CCHHHHHHHHHHHHHcCCCeEeCc----cCcCCCchHHHHHHHHhcCCC-CCeEEEeeeeeccCCCcccccCCCHHHHHH
Q 018374 39 VSEEDGISIIKHAFNKGITFFDTA----DVYGAHANEVLVGKVLKQLPR-KKIQLASKFGVVSMAPTSVIVKGTPEYVRS 113 (357)
Q Consensus 39 ~~~~~~~~~l~~A~~~Gin~~DtA----~~Yg~g~sE~~lG~al~~~~R-~~~~I~tK~~~~~~~~~~~~~~~~~~~i~~ 113 (357)
.+.++..+.++.+.+.|++.|--. ..| ..+.+-+.++.... ..+.+..-.+ ..+.+.+
T Consensus 70 ls~eei~~~~~~~~~~g~~~i~l~gG~~~~~----~~~~l~~l~~~i~~~~~l~i~~~~g-----------~~~~e~l-- 132 (323)
T PRK07094 70 LSPEEILECAKKAYELGYRTIVLQSGEDPYY----TDEKIADIIKEIKKELDVAITLSLG-----------ERSYEEY-- 132 (323)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEEecCCCCCC----CHHHHHHHHHHHHccCCceEEEecC-----------CCCHHHH--
Confidence 367888888999999999977422 222 23344455544322 2343322111 1123322
Q ss_pred HHHHHHhHhCCCcccEEEeecCCCCCC-ccccccCCCChhHHHHHHHHHHHcCccc----eEecCCCCHHHHHHHhc
Q 018374 114 CCEASLKRLGVDYIDLYYQHRVDPSVP-IEDTVCDSLPTSLNIGELKMLVVEGKIK----YIGLSEASPDTIRRAHA 185 (357)
Q Consensus 114 ~v~~sL~~Lg~d~iDl~~lH~pd~~~~-~~~~~~~~~~~~~~~~aL~~L~~~G~ir----~iGvS~~~~~~l~~~~~ 185 (357)
+.|...|++.+ + +..+...+ .-+.......+.+.+++++.+++.|.-- -+|+.+.+.+.+.+.+.
T Consensus 133 ---~~Lk~aG~~~v---~-~glEs~~~~~~~~i~~~~s~~~~~~~i~~l~~~Gi~v~~~~iiGlpget~ed~~~~l~ 202 (323)
T PRK07094 133 ---KAWKEAGADRY---L-LRHETADKELYAKLHPGMSFENRIACLKDLKELGYEVGSGFMVGLPGQTLEDLADDIL 202 (323)
T ss_pred ---HHHHHcCCCEE---E-eccccCCHHHHHHhCCCCCHHHHHHHHHHHHHcCCeecceEEEECCCCCHHHHHHHHH
Confidence 24555675543 3 23322110 0011112334566699999999999621 24555666666655433
No 168
>PRK00730 rnpA ribonuclease P; Reviewed
Probab=29.49 E-value=1.6e+02 Score=24.08 Aligned_cols=46 Identities=9% Similarity=0.192 Sum_probs=31.7
Q ss_pred CCCeEEEeeeeeccCCCcccccCCCHHHHHHHHHHHHhHhC--CCcccEEEeecCCCC
Q 018374 83 RKKIQLASKFGVVSMAPTSVIVKGTPEYVRSCCEASLKRLG--VDYIDLYYQHRVDPS 138 (357)
Q Consensus 83 R~~~~I~tK~~~~~~~~~~~~~~~~~~~i~~~v~~sL~~Lg--~d~iDl~~lH~pd~~ 138 (357)
|=-+.|+-|+|. ...+..|++.+.++.+... ....|++++......
T Consensus 47 RlG~sVSKKvg~----------AV~RNRiKR~lREafR~~~~~l~g~DiVviaR~~~~ 94 (138)
T PRK00730 47 KVGITVSKKFGK----------AHQRNRFKRIVREAFRHVRHNLPGCQIVVSPKGNSQ 94 (138)
T ss_pred eEEEEEeccccc----------chhHHHHHHHHHHHHHHhhcccCCceEEEEeccccC
Confidence 444667777653 2357778888888877663 346899999887654
No 169
>KOG0023 consensus Alcohol dehydrogenase, class V [Secondary metabolites biosynthesis, transport and catabolism]
Probab=29.45 E-value=2.2e+02 Score=27.04 Aligned_cols=150 Identities=17% Similarity=0.149 Sum_probs=82.4
Q ss_pred CCCCceecCCCCcccccceeccccccCCCCCCCCHHHHHHHHHHHHHcCCC--eEeCccCcCCCchHHHHHHHHhcCCCC
Q 018374 7 IQAPRVKLGTQGLEVSKLGFGCMGLTGMYNSPVSEEDGISIIKHAFNKGIT--FFDTADVYGAHANEVLVGKVLKQLPRK 84 (357)
Q Consensus 7 ~~m~~~~lg~tg~~vs~lglG~~~~g~~~~~~~~~~~~~~~l~~A~~~Gin--~~DtA~~Yg~g~sE~~lG~al~~~~R~ 84 (357)
++|++..++ .|..|-.+|+|. +| +=.++.|-..|.+ .||+++. ..|+. ++.+.-|
T Consensus 172 spLk~~g~~-pG~~vgI~GlGG--LG------------h~aVq~AKAMG~rV~vis~~~~----kkeea----~~~LGAd 228 (360)
T KOG0023|consen 172 SPLKRSGLG-PGKWVGIVGLGG--LG------------HMAVQYAKAMGMRVTVISTSSK----KKEEA----IKSLGAD 228 (360)
T ss_pred ehhHHcCCC-CCcEEEEecCcc--cc------------hHHHHHHHHhCcEEEEEeCCch----hHHHH----HHhcCcc
Confidence 457777775 888888888887 43 2345666666765 5676532 23444 4444455
Q ss_pred CeEEEeeeeeccCCCcccccCCCHHHHHHHHHHHHhHhCCCcccEEEeecCCCCCCccccccCCCChhHHHHHHHHHHHc
Q 018374 85 KIQLASKFGVVSMAPTSVIVKGTPEYVRSCCEASLKRLGVDYIDLYYQHRVDPSVPIEDTVCDSLPTSLNIGELKMLVVE 164 (357)
Q Consensus 85 ~~~I~tK~~~~~~~~~~~~~~~~~~~i~~~v~~sL~~Lg~d~iDl~~lH~pd~~~~~~~~~~~~~~~~~~~~aL~~L~~~ 164 (357)
.++++++- ..+.+.+..++.-. .+.+--+ ...++ -.+++-||..
T Consensus 229 ~fv~~~~d----------------~d~~~~~~~~~dg~-~~~v~~~------a~~~~-------------~~~~~~lk~~ 272 (360)
T KOG0023|consen 229 VFVDSTED----------------PDIMKAIMKTTDGG-IDTVSNL------AEHAL-------------EPLLGLLKVN 272 (360)
T ss_pred eeEEecCC----------------HHHHHHHHHhhcCc-ceeeeec------cccch-------------HHHHHHhhcC
Confidence 66666652 23444555444322 1211111 11111 4557778999
Q ss_pred CccceEecCCCCHHHHHHHhccCCceEEeccccccccchh-hhHHHHHHHhCCce
Q 018374 165 GKIKYIGLSEASPDTIRRAHAVHPITAVQMEWSLLTRDIE-EEIIPLCRELGIGI 218 (357)
Q Consensus 165 G~ir~iGvS~~~~~~l~~~~~~~~~~~~q~~~n~~~~~~~-~~~~~~~~~~gi~v 218 (357)
|++-.+|+-..+ ..+.-.. .-+-...+..|..-...+ +++++||.+++|..
T Consensus 273 Gt~V~vg~p~~~-~~~~~~~--lil~~~~I~GS~vG~~ket~E~Ldf~a~~~ik~ 324 (360)
T KOG0023|consen 273 GTLVLVGLPEKP-LKLDTFP--LILGRKSIKGSIVGSRKETQEALDFVARGLIKS 324 (360)
T ss_pred CEEEEEeCcCCc-ccccchh--hhcccEEEEeeccccHHHHHHHHHHHHcCCCcC
Confidence 999999997642 1111000 001223444454443333 68999999998764
No 170
>PRK02227 hypothetical protein; Provisional
Probab=29.40 E-value=4.3e+02 Score=23.85 Aligned_cols=157 Identities=15% Similarity=0.162 Sum_probs=88.7
Q ss_pred CHHHHHHHHHHHHHcCCCeEeCcc-CcC--CCchHHHHHHHHhcCCCCCeEEEeeeeeccCCCcccccCCCHHHHHHHHH
Q 018374 40 SEEDGISIIKHAFNKGITFFDTAD-VYG--AHANEVLVGKVLKQLPRKKIQLASKFGVVSMAPTSVIVKGTPEYVRSCCE 116 (357)
Q Consensus 40 ~~~~~~~~l~~A~~~Gin~~DtA~-~Yg--~g~sE~~lG~al~~~~R~~~~I~tK~~~~~~~~~~~~~~~~~~~i~~~v~ 116 (357)
+.+|+. .|++.|..+||.=+ .-| +..+..++.+..+. -+.+.-||..+|-. .+.+..+-..+.
T Consensus 9 ~~eEA~----~Al~~GaDiIDvK~P~~GaLGA~~p~vir~Iv~~-~~~~~pvSAtiGD~---------p~~p~~~~~aa~ 74 (238)
T PRK02227 9 NLEEAL----EALAGGADIIDVKNPKEGSLGANFPWVIREIVAA-VPGRKPVSATIGDV---------PYKPGTISLAAL 74 (238)
T ss_pred CHHHHH----HHHhcCCCEEEccCCCCCCCCCCCHHHHHHHHHH-hCCCCCceeeccCC---------CCCchHHHHHHH
Confidence 556654 46789999999642 222 13455666665544 33445677777643 223444444433
Q ss_pred HHHhHhCCCcccEEEeecCCCCCCccccccCCCChhHHHHHHHHHHHcCccceEecCCC------CHHHHHHHhccCCce
Q 018374 117 ASLKRLGVDYIDLYYQHRVDPSVPIEDTVCDSLPTSLNIGELKMLVVEGKIKYIGLSEA------SPDTIRRAHAVHPIT 190 (357)
Q Consensus 117 ~sL~~Lg~d~iDl~~lH~pd~~~~~~~~~~~~~~~~~~~~aL~~L~~~G~ir~iGvS~~------~~~~l~~~~~~~~~~ 190 (357)
..-.-|+||+-+-+.-..+... ..+. +...++++.......++-.++.+.+ ++..+..+.....++
T Consensus 75 -~~a~~GvDyVKvGl~~~~~~~~-~~~~------~~~v~~a~~~~~~~~~vVav~yaD~~r~~~~~~~~l~~~a~~aGf~ 146 (238)
T PRK02227 75 -GAAATGADYVKVGLYGGKTAEE-AVEV------MKAVVRAVKDLDPGKIVVAAGYADAHRVGSVSPLSLPAIAADAGFD 146 (238)
T ss_pred -HHHhhCCCEEEEcCCCCCcHHH-HHHH------HHHHHHhhhhcCCCCeEEEEEecccccccCCChHHHHHHHHHcCCC
Confidence 2334577887766642222111 1111 1122344444555777888888875 567777777777888
Q ss_pred EEeccc------cccccc---hhhhHHHHHHHhCCce
Q 018374 191 AVQMEW------SLLTRD---IEEEIIPLCRELGIGI 218 (357)
Q Consensus 191 ~~q~~~------n~~~~~---~~~~~~~~~~~~gi~v 218 (357)
.+++.- +++++- ...++++.|+++|+..
T Consensus 147 g~MlDTa~Kdg~~Lfd~l~~~~L~~Fv~~ar~~Gl~~ 183 (238)
T PRK02227 147 GAMLDTAIKDGKSLFDHMDEEELAEFVAEARSHGLMS 183 (238)
T ss_pred EEEEecccCCCcchHhhCCHHHHHHHHHHHHHcccHh
Confidence 887743 222221 1257888899888754
No 171
>TIGR01182 eda Entner-Doudoroff aldolase. 2-deydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) is an enzyme of the Entner-Doudoroff pathway. This aldolase has another function, 4-hydroxy-2-oxoglutarate aldolase (EC 4.1.3.16) shown experimentally in Escherichia coli and Pseudomonas putida
Probab=29.29 E-value=1.9e+02 Score=25.36 Aligned_cols=59 Identities=22% Similarity=0.374 Sum_probs=42.1
Q ss_pred HHHHHHHHHcCccceEecCC-CCHHHHHHHhccCCceEEeccccccccchhhhHHHHHHHhCCceee
Q 018374 155 IGELKMLVVEGKIKYIGLSE-ASPDTIRRAHAVHPITAVQMEWSLLTRDIEEEIIPLCRELGIGIVP 220 (357)
Q Consensus 155 ~~aL~~L~~~G~ir~iGvS~-~~~~~l~~~~~~~~~~~~q~~~n~~~~~~~~~~~~~~~~~gi~v~a 220 (357)
++.+++++++..=-.||..+ .+.++.+.+++..- +++. ++ ....+++++|+++||.++.
T Consensus 47 ~~~i~~l~~~~~~~~vGAGTVl~~~~a~~a~~aGA-~Fiv---sP---~~~~~v~~~~~~~~i~~iP 106 (204)
T TIGR01182 47 LDAIRLLRKEVPDALIGAGTVLNPEQLRQAVDAGA-QFIV---SP---GLTPELAKHAQDHGIPIIP 106 (204)
T ss_pred HHHHHHHHHHCCCCEEEEEeCCCHHHHHHHHHcCC-CEEE---CC---CCCHHHHHHHHHcCCcEEC
Confidence 77777887764335699988 58999999887543 3332 22 2235899999999998876
No 172
>PRK15108 biotin synthase; Provisional
Probab=29.12 E-value=5.1e+02 Score=24.64 Aligned_cols=111 Identities=14% Similarity=0.184 Sum_probs=57.3
Q ss_pred CCHHHHHHHHHHHHHcCCCeEeCccCc-C-CCchHHHHHHHHhcCCCCCeEEEeeeeeccCCCcccccCCCHHHHHHHHH
Q 018374 39 VSEEDGISIIKHAFNKGITFFDTADVY-G-AHANEVLVGKVLKQLPRKKIQLASKFGVVSMAPTSVIVKGTPEYVRSCCE 116 (357)
Q Consensus 39 ~~~~~~~~~l~~A~~~Gin~~DtA~~Y-g-~g~sE~~lG~al~~~~R~~~~I~tK~~~~~~~~~~~~~~~~~~~i~~~v~ 116 (357)
.+.++..+..+.+.+.|++.|--.... . ....-+.+-+.++......+.++.-.|. .+.+.+
T Consensus 76 ls~eEI~~~a~~~~~~G~~~i~i~~~g~~p~~~~~e~i~~~i~~ik~~~i~v~~s~G~-----------ls~e~l----- 139 (345)
T PRK15108 76 MEVEQVLESARKAKAAGSTRFCMGAAWKNPHERDMPYLEQMVQGVKAMGLETCMTLGT-----------LSESQA----- 139 (345)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEEecCCCCCcchHHHHHHHHHHHHhCCCEEEEeCCc-----------CCHHHH-----
Confidence 578888888888889999988432221 1 1122255666666533222333322221 233322
Q ss_pred HHHhHhCCCcccEEEeecCCCCCCccccccCCCChhHHHHHHHHHHHcCccce
Q 018374 117 ASLKRLGVDYIDLYYQHRVDPSVPIEDTVCDSLPTSLNIGELKMLVVEGKIKY 169 (357)
Q Consensus 117 ~sL~~Lg~d~iDl~~lH~pd~~~~~~~~~~~~~~~~~~~~aL~~L~~~G~ir~ 169 (357)
+-|...|+|.+. |+.+.....-...+....+...++.++.+++.|.--.
T Consensus 140 ~~LkeAGld~~n----~~leT~p~~f~~I~~~~~~~~rl~~i~~a~~~G~~v~ 188 (345)
T PRK15108 140 QRLANAGLDYYN----HNLDTSPEFYGNIITTRTYQERLDTLEKVRDAGIKVC 188 (345)
T ss_pred HHHHHcCCCEEe----eccccChHhcCCCCCCCCHHHHHHHHHHHHHcCCcee
Confidence 234455766532 3333211110111122355667999999999997433
No 173
>PRK01045 ispH 4-hydroxy-3-methylbut-2-enyl diphosphate reductase; Reviewed
Probab=28.96 E-value=3.2e+02 Score=25.51 Aligned_cols=116 Identities=14% Similarity=0.127 Sum_probs=69.3
Q ss_pred HHHHHHH--HHcCccceEecCCCCHHHHHHHhcc----CCceEEecccccccc---chhhhHHHHHHHhCCceeecccCc
Q 018374 155 IGELKML--VVEGKIKYIGLSEASPDTIRRAHAV----HPITAVQMEWSLLTR---DIEEEIIPLCRELGIGIVPYSPLG 225 (357)
Q Consensus 155 ~~aL~~L--~~~G~ir~iGvS~~~~~~l~~~~~~----~~~~~~q~~~n~~~~---~~~~~~~~~~~~~gi~v~a~spl~ 225 (357)
.+.++.| ....++..+--++++.+.++++.+. .+ .+....+|-++. +.+....+++++.++-++.-++-+
T Consensus 144 ~~e~~~l~~~~~~~v~vvsQTT~~~~~~~~i~~~l~~~~~-~~~v~~~nTIC~aT~~RQ~a~~~La~~vD~miVVGg~~S 222 (298)
T PRK01045 144 PEDVAKLEVKDPDKLALVTQTTLSVDDTAEIIAALKERFP-EIQGPPKDDICYATQNRQEAVKELAPQADLVIVVGSKNS 222 (298)
T ss_pred HHHHhhcccCCCCcEEEEEcCCCcHHHHHHHHHHHHHhCc-CcccCCCCCcchhhHHHHHHHHHHHhhCCEEEEECCCCC
Confidence 4445555 2234555555567777776665443 22 111112333332 234678888888777666533222
Q ss_pred cccCCCCCcCCCCCCCcccccCCCCCCCcchhhHHHHHHHHHHHHhcCC------ChHHHHHHHHHhCCCCeEEecCCCC
Q 018374 226 RGLLGGKAVVESLPANSFLISHPRFTGENLGKNKQIYARVENLAKRNKC------TPAQLSLAWLLRQGDDIVPIPGTTK 299 (357)
Q Consensus 226 ~G~L~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ia~~~g~------s~~q~al~~~l~~~~v~~~ivG~~~ 299 (357)
+ . -..|.++|++++. ++.++-..|+.... .+.+..|+|+
T Consensus 223 s-----N-----------------------------T~kL~~i~~~~~~~t~~Ie~~~el~~~~l~~~~-~VGitaGAST 267 (298)
T PRK01045 223 S-----N-----------------------------SNRLREVAEEAGAPAYLIDDASEIDPEWFKGVK-TVGVTAGASA 267 (298)
T ss_pred c-----c-----------------------------HHHHHHHHHHHCCCEEEECChHHCcHHHhcCCC-EEEEEecCCC
Confidence 1 0 0378888888763 68999999996544 4788899999
Q ss_pred HHHHHHH
Q 018374 300 IKNLDEN 306 (357)
Q Consensus 300 ~~~l~en 306 (357)
|+-+-+.
T Consensus 268 P~~li~e 274 (298)
T PRK01045 268 PEWLVQE 274 (298)
T ss_pred CHHHHHH
Confidence 9976544
No 174
>PF01118 Semialdhyde_dh: Semialdehyde dehydrogenase, NAD binding domain; InterPro: IPR000534 The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase [], an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 3Q0E_B 1MB4_A 3PZR_A 1MC4_A 3TZ6_A 3VOS_A 2CVO_B 2R00_C 2QZ9_A 2EP5_C ....
Probab=28.84 E-value=76 Score=24.91 Aligned_cols=27 Identities=11% Similarity=0.236 Sum_probs=24.6
Q ss_pred CHHHHHHHHHHHHHcCCCeEeCccCcC
Q 018374 40 SEEDGISIIKHAFNKGITFFDTADVYG 66 (357)
Q Consensus 40 ~~~~~~~~l~~A~~~Gin~~DtA~~Yg 66 (357)
+.+.+.+....+++.|++.||.+..|.
T Consensus 75 ~~~~~~~~~~~~~~~g~~ViD~s~~~R 101 (121)
T PF01118_consen 75 PHGASKELAPKLLKAGIKVIDLSGDFR 101 (121)
T ss_dssp CHHHHHHHHHHHHHTTSEEEESSSTTT
T ss_pred chhHHHHHHHHHhhCCcEEEeCCHHHh
Confidence 677889999999999999999999985
No 175
>cd04734 OYE_like_3_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 3. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase. One member of this subgroup, the Sinorhizobium meliloti stachydrine utilization protein stcD, has been idenified as a putative N-methylproline demethylase.
Probab=28.83 E-value=5.1e+02 Score=24.57 Aligned_cols=106 Identities=11% Similarity=-0.010 Sum_probs=53.9
Q ss_pred CCCCeEEEeeeeeccCCCcccccCCCHHHHHHHHHHHHhHhCCCcccEEEeecCCCCCCccc---cccCCCChhHHHHHH
Q 018374 82 PRKKIQLASKFGVVSMAPTSVIVKGTPEYVRSCCEASLKRLGVDYIDLYYQHRVDPSVPIED---TVCDSLPTSLNIGEL 158 (357)
Q Consensus 82 ~R~~~~I~tK~~~~~~~~~~~~~~~~~~~i~~~v~~sL~~Lg~d~iDl~~lH~pd~~~~~~~---~~~~~~~~~~~~~aL 158 (357)
-..++.|..|++......+ ..+.+... .+-+.|+..| .+|++-+|.......... ....+..-.-.|+..
T Consensus 205 vg~~~~v~iRl~~~~~~~~----G~~~~e~~-~~~~~l~~~G--~vd~i~vs~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 277 (343)
T cd04734 205 VGPDFIVGIRISGDEDTEG----GLSPDEAL-EIAARLAAEG--LIDYVNVSAGSYYTLLGLAHVVPSMGMPPGPFLPLA 277 (343)
T ss_pred cCCCCeEEEEeehhhccCC----CCCHHHHH-HHHHHHHhcC--CCCEEEeCCCCCCcccccccccCCCCCCcchhHHHH
Confidence 4467889999986542211 13444333 3334455555 255555654322111000 000000000115555
Q ss_pred HHHHHcCccceEecCCC-CHHHHHHHhccCCceEEec
Q 018374 159 KMLVVEGKIKYIGLSEA-SPDTIRRAHAVHPITAVQM 194 (357)
Q Consensus 159 ~~L~~~G~ir~iGvS~~-~~~~l~~~~~~~~~~~~q~ 194 (357)
..+++.=.+--+++.+. +++.++++++....|.+.+
T Consensus 278 ~~ik~~~~ipvi~~G~i~~~~~~~~~l~~~~~D~V~~ 314 (343)
T cd04734 278 ARIKQAVDLPVFHAGRIRDPAEAEQALAAGHADMVGM 314 (343)
T ss_pred HHHHHHcCCCEEeeCCCCCHHHHHHHHHcCCCCeeee
Confidence 56665545666677664 7888999988777776654
No 176
>cd02932 OYE_YqiM_FMN Old yellow enzyme (OYE) YqjM-like FMN binding domain. YqjM is involved in the oxidative stress response of Bacillus subtilis. Like the other OYE members, each monomer of YqjM contains FMN as a non-covalently bound cofactor and uses NADPH as a reducing agent. The YqjM enzyme exists as a homotetramer that is assembled as a dimer of catalytically dependent dimers, while other OYE members exist only as monomers or dimers. Moreover, the protein displays a shared active site architecture where an arginine finger at the COOH terminus of one monomer extends into the active site of the adjacent monomer and is directly involved in substrate recognition. Another remarkable difference in the binding of the ligand in YqjM is represented by the contribution of the NH2-terminal tyrosine instead of a COOH-terminal tyrosine in OYE and its homologs.
Probab=28.40 E-value=5.1e+02 Score=24.39 Aligned_cols=97 Identities=18% Similarity=0.114 Sum_probs=55.3
Q ss_pred CCCCeEEEeeeeeccCCCcccccCCCHHHHHHHHHHHHhHhCCCcccEEEeecCCCCC----CccccccCCCChhHHHHH
Q 018374 82 PRKKIQLASKFGVVSMAPTSVIVKGTPEYVRSCCEASLKRLGVDYIDLYYQHRVDPSV----PIEDTVCDSLPTSLNIGE 157 (357)
Q Consensus 82 ~R~~~~I~tK~~~~~~~~~~~~~~~~~~~i~~~v~~sL~~Lg~d~iDl~~lH~pd~~~----~~~~~~~~~~~~~~~~~a 157 (357)
-.+++.|..|+.......+ ..+.+... .+-+.|+..|+|+++ +|...... +.... ..++.
T Consensus 218 vG~d~~v~vri~~~~~~~~----g~~~~e~~-~ia~~Le~~gvd~ie---v~~g~~~~~~~~~~~~~--------~~~~~ 281 (336)
T cd02932 218 WPEDKPLFVRISATDWVEG----GWDLEDSV-ELAKALKELGVDLID---VSSGGNSPAQKIPVGPG--------YQVPF 281 (336)
T ss_pred cCCCceEEEEEcccccCCC----CCCHHHHH-HHHHHHHHcCCCEEE---ECCCCCCcccccCCCcc--------ccHHH
Confidence 4457789999875422111 22444333 333456677765544 44322110 11000 01466
Q ss_pred HHHHHHcCccceEecCCC-CHHHHHHHhccCCceEEec
Q 018374 158 LKMLVVEGKIKYIGLSEA-SPDTIRRAHAVHPITAVQM 194 (357)
Q Consensus 158 L~~L~~~G~ir~iGvS~~-~~~~l~~~~~~~~~~~~q~ 194 (357)
++++++.=.|--++..+. +++..+++++....|.+++
T Consensus 282 ~~~ir~~~~iPVi~~G~i~t~~~a~~~l~~g~aD~V~~ 319 (336)
T cd02932 282 AERIRQEAGIPVIAVGLITDPEQAEAILESGRADLVAL 319 (336)
T ss_pred HHHHHhhCCCCEEEeCCCCCHHHHHHHHHcCCCCeehh
Confidence 677777767777777775 8888999988877777765
No 177
>PRK14459 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=28.36 E-value=1.9e+02 Score=27.96 Aligned_cols=98 Identities=11% Similarity=0.079 Sum_probs=60.7
Q ss_pred EEEeecCCCCCCccccc-cCCCChhHHHHHHHHHH-HcCc---cceEecCC--CCHH---HHHHHhccC---CceEEecc
Q 018374 129 LYYQHRVDPSVPIEDTV-CDSLPTSLNIGELKMLV-VEGK---IKYIGLSE--ASPD---TIRRAHAVH---PITAVQME 195 (357)
Q Consensus 129 l~~lH~pd~~~~~~~~~-~~~~~~~~~~~aL~~L~-~~G~---ir~iGvS~--~~~~---~l~~~~~~~---~~~~~q~~ 195 (357)
.+.||.+++.....-+. ....++.+.++++.+.. +.|+ |.++=+.+ .+.+ .+.+++... +..++-++
T Consensus 241 avSLha~d~e~R~~l~p~n~~~~l~~ll~a~~~~~~~~grrv~ieyvLi~GvNDs~e~a~~L~~llk~~~~~~~~VNLIp 320 (373)
T PRK14459 241 AVSLHAPDDELRDELVPVNTRWKVDEVLDAARYYADATGRRVSIEYALIRDINDQPWRADLLGKKLHGRGGGWVHVNLIP 320 (373)
T ss_pred EEEeCCCCHHHHHHhcCcccCCCHHHHHHHHHHHHHHhCCEEEEEEEEeCCCCCCHHHHHHHHHHHhhccCCCeEEEEEc
Confidence 46789997653222111 12235667788877776 4454 44554443 2333 355555555 56789999
Q ss_pred ccccccc----hh----hhHHHHHHHhCCceeecccCcc
Q 018374 196 WSLLTRD----IE----EEIIPLCRELGIGIVPYSPLGR 226 (357)
Q Consensus 196 ~n~~~~~----~~----~~~~~~~~~~gi~v~a~spl~~ 226 (357)
||++... +. .++.+..+++||.+......+.
T Consensus 321 yNp~~~~~y~~~~~~~~~~F~~~L~~~gi~~tiR~~~G~ 359 (373)
T PRK14459 321 LNPTPGSKWTASPPEVEREFVRRLRAAGVPCTVRDTRGQ 359 (373)
T ss_pred cCCCCCCCCcCCCHHHHHHHHHHHHHCCCeEEeeCCCCc
Confidence 9997541 11 4677888899999998777654
No 178
>TIGR00048 radical SAM enzyme, Cfr family. A Staphylococcus sciuri plasmid-borne member of this family, Cfr, has been identified as essential to transferrable resistance to chloramphenicol and florfenicol by an unknown mechanism. A 14-15 residue cluster with four perfectly conserved Cys residues suggests this protein may be an enzyme with an iron-sulfur cluster. The Cys cluster is part of the radical SAM domain, suggested to provide a general mechanism by which the Fe-S center cleaves S-adenosylmethionine to initiate radical-based catalysis. Members of this family lack apparent transmembrane domains.
Probab=28.33 E-value=1.8e+02 Score=27.85 Aligned_cols=97 Identities=7% Similarity=0.098 Sum_probs=55.8
Q ss_pred EEeecCCCCCCccccc-cCCCChhHHHHHHHHHHH-cCc---cceEecCC--CCHHH---HHHHhccCCceEEecccccc
Q 018374 130 YYQHRVDPSVPIEDTV-CDSLPTSLNIGELKMLVV-EGK---IKYIGLSE--ASPDT---IRRAHAVHPITAVQMEWSLL 199 (357)
Q Consensus 130 ~~lH~pd~~~~~~~~~-~~~~~~~~~~~aL~~L~~-~G~---ir~iGvS~--~~~~~---l~~~~~~~~~~~~q~~~n~~ 199 (357)
+.||.+++.....-+. .....+...++++.+..+ .|+ |+++=+.+ .+.+. +.+++...++.++-++||.+
T Consensus 219 iSL~a~~~e~r~~l~p~~~~~~l~~ll~~l~~~~~~~g~~VtieyvLI~GvNDs~e~a~~La~llk~l~~~VnLIPynp~ 298 (355)
T TIGR00048 219 ISLHAPNDELRSSLMPINKKYNIETLLAAVRRYLNKTGRRVTFEYVLLDGVNDQVEHAEELAELLKGTKCKVNLIPWNPF 298 (355)
T ss_pred EEeCCCCHHHHHHhcCcccCCCHHHHHHHHHHHHHHhCCEEEEEEEEECCCCCCHHHHHHHHHHHhcCCCceEEEecccC
Confidence 6799997543211111 012245666888876544 342 23443333 23444 44455555667888999987
Q ss_pred ccc----hh----hhHHHHHHHhCCceeecccCcc
Q 018374 200 TRD----IE----EEIIPLCRELGIGIVPYSPLGR 226 (357)
Q Consensus 200 ~~~----~~----~~~~~~~~~~gi~v~a~spl~~ 226 (357)
... +. ..+.++.+++|+.+......+.
T Consensus 299 ~~~~~~~ps~e~i~~f~~~L~~~gi~v~iR~~~G~ 333 (355)
T TIGR00048 299 PEADYERPSNEQIDRFAKTLMSYGFTVTIRKSRGD 333 (355)
T ss_pred CCCCCCCCCHHHHHHHHHHHHHCCCeEEEeCCCCc
Confidence 531 11 3466777889999988776643
No 179
>TIGR00216 ispH_lytB (E)-4-hydroxy-3-methyl-but-2-enyl pyrophosphate reductase (IPP and DMAPP forming). Escherichia coli LytB protein had been found to regulate the activity of RelA (guanosine 3',5'-bispyrophosphate synthetase I), which in turn controls the level of a regulatory metabolite. It is involved in penicillin tolerance and the stringent response.
Probab=28.20 E-value=2.7e+02 Score=25.82 Aligned_cols=116 Identities=17% Similarity=0.224 Sum_probs=70.5
Q ss_pred HHHHHHHHHcCccceEecCCCCHHHHHHHhcc----CCceEEeccccccc---cchhhhHHHHHHHhCCceeecccCccc
Q 018374 155 IGELKMLVVEGKIKYIGLSEASPDTIRRAHAV----HPITAVQMEWSLLT---RDIEEEIIPLCRELGIGIVPYSPLGRG 227 (357)
Q Consensus 155 ~~aL~~L~~~G~ir~iGvS~~~~~~l~~~~~~----~~~~~~q~~~n~~~---~~~~~~~~~~~~~~gi~v~a~spl~~G 227 (357)
.+.++.|....++..+--++.+.+.+.++.+. .+..-..+ +|-++ .+.+....+++++.++-++.-+.-++
T Consensus 144 ~~d~~~l~~~~~v~vvsQTT~~~~~~~~i~~~l~~~~~~~~~~~-~nTIC~AT~~RQ~a~~~la~~vD~miVVGg~nSs- 221 (280)
T TIGR00216 144 LEDLENFKVEDLLGVVSQTTLSQEDTKEIVAELKARVPQKEVPV-FNTICYATQNRQDAVKELAPEVDLMIVIGGKNSS- 221 (280)
T ss_pred HHHHHhCCCCCcEEEEEcCCCcHHHHHHHHHHHHHhCCCcCCCC-CCCcccccHHHHHHHHHHHhhCCEEEEECCCCCc-
Confidence 44555554455555555567777776665442 21111111 22222 22346788888887766655322221
Q ss_pred cCCCCCcCCCCCCCcccccCCCCCCCcchhhHHHHHHHHHHHHhcCC------ChHHHHHHHHHhCCCCeEEecCCCCHH
Q 018374 228 LLGGKAVVESLPANSFLISHPRFTGENLGKNKQIYARVENLAKRNKC------TPAQLSLAWLLRQGDDIVPIPGTTKIK 301 (357)
Q Consensus 228 ~L~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ia~~~g~------s~~q~al~~~l~~~~v~~~ivG~~~~~ 301 (357)
+ -.+|.++|+++|. ++.++-..|+.... .+.+..|+|+|+
T Consensus 222 --------------------------N-------T~rL~ei~~~~~~~t~~Ie~~~el~~~~l~~~~-~VGiTAGASTP~ 267 (280)
T TIGR00216 222 --------------------------N-------TTRLYEIAEEHGPPSYLIETAEELPEEWLKGVK-VVGITAGASTPD 267 (280)
T ss_pred --------------------------h-------HHHHHHHHHHhCCCEEEECChHHCCHHHhCCCC-EEEEEecCCCCH
Confidence 0 1478889988874 68899999997654 468889999999
Q ss_pred HHHHH
Q 018374 302 NLDEN 306 (357)
Q Consensus 302 ~l~en 306 (357)
.+-+.
T Consensus 268 ~li~e 272 (280)
T TIGR00216 268 WIIEE 272 (280)
T ss_pred HHHHH
Confidence 77554
No 180
>PF05368 NmrA: NmrA-like family; InterPro: IPR008030 NmrA is a negative transcriptional regulator involved in the post-translational modification of the transcription factor AreA. NmrA is part of a system controlling nitrogen metabolite repression in fungi []. This family only contains a few sequences as iteration results in significant matches to other Rossmann fold families.; PDB: 2ZCV_A 2ZCU_A 2R6J_B 3C3X_A 2QZZ_B 2QYS_A 2QX7_A 2QW8_A 2R2G_B 3E5M_B ....
Probab=28.16 E-value=2.4e+02 Score=24.55 Aligned_cols=71 Identities=13% Similarity=0.090 Sum_probs=46.4
Q ss_pred HHHHHHHHcCccceEecCCCCHHHHHHHhccCCceEEecccc-ccccchhhhHHHHHHHhCCceeecccCccc
Q 018374 156 GELKMLVVEGKIKYIGLSEASPDTIRRAHAVHPITAVQMEWS-LLTRDIEEEIIPLCRELGIGIVPYSPLGRG 227 (357)
Q Consensus 156 ~aL~~L~~~G~ir~iGvS~~~~~~l~~~~~~~~~~~~q~~~n-~~~~~~~~~~~~~~~~~gi~v~a~spl~~G 227 (357)
+....|++.|. ..+-.+-.+.+.|.++++.....++.+... .........+++.|++.||..+.+|.++..
T Consensus 35 ~~~~~l~~~g~-~vv~~d~~~~~~l~~al~g~d~v~~~~~~~~~~~~~~~~~li~Aa~~agVk~~v~ss~~~~ 106 (233)
T PF05368_consen 35 DRAQQLQALGA-EVVEADYDDPESLVAALKGVDAVFSVTPPSHPSELEQQKNLIDAAKAAGVKHFVPSSFGAD 106 (233)
T ss_dssp HHHHHHHHTTT-EEEES-TT-HHHHHHHHTTCSEEEEESSCSCCCHHHHHHHHHHHHHHHT-SEEEESEESSG
T ss_pred hhhhhhhcccc-eEeecccCCHHHHHHHHcCCceEEeecCcchhhhhhhhhhHHHhhhccccceEEEEEeccc
Confidence 34566777777 456555568899999988666555444433 211223478999999999999999888754
No 181
>COG0282 ackA Acetate kinase [Energy production and conversion]
Probab=27.73 E-value=2.7e+02 Score=26.99 Aligned_cols=122 Identities=15% Similarity=0.180 Sum_probs=70.3
Q ss_pred HHHHHHHcCccceEecCCCCHH----HHHHHhccCCceEEeccccccccchhhhHHHHHHHhCCce---eecccCccccC
Q 018374 157 ELKMLVVEGKIKYIGLSEASPD----TIRRAHAVHPITAVQMEWSLLTRDIEEEIIPLCRELGIGI---VPYSPLGRGLL 229 (357)
Q Consensus 157 aL~~L~~~G~ir~iGvS~~~~~----~l~~~~~~~~~~~~q~~~n~~~~~~~~~~~~~~~~~gi~v---~a~spl~~G~L 229 (357)
-=.++.++-.||.+|+=..+-. +..+.+...--+.+.+.+++-+-. --.|-++|-.| |.+.||. |+.
T Consensus 162 lP~~~y~~~gIRrYGFHGtSh~YVs~~aa~~L~k~~~~l~~I~~HLGNGA-----SicAiknGkSvDTSMGfTPLe-Gl~ 235 (396)
T COG0282 162 LPYELYEKYGIRRYGFHGTSHKYVSQRAAEILGKPLEDLNLITCHLGNGA-----SICAIKNGKSVDTSMGFTPLE-GLM 235 (396)
T ss_pred CCHHHHHhcCceecccCccchHHHHHHHHHHhCCCccccCEEEEEecCch-----hhhhhhCCeeeccCCCCCccc-cee
Confidence 3456788889999999765433 444444443236667777776541 11223556554 4678887 676
Q ss_pred CCCCcCCCCCCCcccccCCCCCCCcchhhHHHHHHHHHHHHhcCCChHHHHHHHHHhCCCCeEEecCCC-CHHHHHHHHh
Q 018374 230 GGKAVVESLPANSFLISHPRFTGENLGKNKQIYARVENLAKRNKCTPAQLSLAWLLRQGDDIVPIPGTT-KIKNLDENIG 308 (357)
Q Consensus 230 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ia~~~g~s~~q~al~~~l~~~~v~~~ivG~~-~~~~l~enl~ 308 (357)
.|....+--| ..+-.++++.|+|+.|+.- +|.+....-=|.|.+ +...++++..
T Consensus 236 MGTRsGdiDP-----------------------~ii~~l~~~~~~s~~~i~~--~LNkkSGllGlSg~ssD~R~l~~~~~ 290 (396)
T COG0282 236 MGTRSGDIDP-----------------------GIILYLMEQEGMSAEEIDT--LLNKKSGLLGLSGLSSDMRDLEEAAA 290 (396)
T ss_pred ccCCCCCCCh-----------------------HHHHHHHHhcCCCHHHHHH--HHhhhccccccccccchHHHHHHHhc
Confidence 6653222111 3677788889999998654 344442233444533 3555555544
Q ss_pred c
Q 018374 309 S 309 (357)
Q Consensus 309 a 309 (357)
-
T Consensus 291 ~ 291 (396)
T COG0282 291 E 291 (396)
T ss_pred c
Confidence 3
No 182
>PRK14457 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=27.53 E-value=5.5e+02 Score=24.51 Aligned_cols=70 Identities=13% Similarity=0.178 Sum_probs=42.3
Q ss_pred CCCHHHHHHHHHHHHhHhCCCcccEEEeecC-CCCCCccccccCCCChhHHHHHHHHHHHc-Cc-cceEecCCC-CHHHH
Q 018374 105 KGTPEYVRSCCEASLKRLGVDYIDLYYQHRV-DPSVPIEDTVCDSLPTSLNIGELKMLVVE-GK-IKYIGLSEA-SPDTI 180 (357)
Q Consensus 105 ~~~~~~i~~~v~~sL~~Lg~d~iDl~~lH~p-d~~~~~~~~~~~~~~~~~~~~aL~~L~~~-G~-ir~iGvS~~-~~~~l 180 (357)
.++++.|..++....+.++ ..++-+.+-.. +|....+.+ .++++.+.+. |. .|.|=+|+. ....+
T Consensus 128 nlt~~EIv~qv~~~~~~~~-~~~~~IvfmGmGEPlln~~~v----------~~~i~~l~~~~~i~~r~itvST~G~~~~i 196 (345)
T PRK14457 128 SLKAHEIVDQVLTVQEDMQ-RRVSHVVFMGMGEPLLNIDEV----------LAAIRCLNQDLGIGQRRITVSTVGVPKTI 196 (345)
T ss_pred ccCHHHHHHHHHHHHHHhc-CCCCEEEEEecCccccCHHHH----------HHHHHHHhcccCCccCceEEECCCchhhH
Confidence 5789999999998887775 34665555553 444333444 7778777765 32 245555553 33345
Q ss_pred HHHhc
Q 018374 181 RRAHA 185 (357)
Q Consensus 181 ~~~~~ 185 (357)
+++.+
T Consensus 197 ~~L~~ 201 (345)
T PRK14457 197 PQLAE 201 (345)
T ss_pred HHHHh
Confidence 55544
No 183
>cd03328 MR_like_3 Mandelate racemase (MR)-like subfamily of the enolase superfamily, subgroup 3. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. This subgroup's function is unknown.
Probab=27.49 E-value=5.4e+02 Score=24.42 Aligned_cols=68 Identities=10% Similarity=0.080 Sum_probs=51.4
Q ss_pred HHHHHHHHHc--Cccc-eEecCCCCHHHHHHHhccCCceEEecccccccc-chhhhHHHHHHHhCCceeecc
Q 018374 155 IGELKMLVVE--GKIK-YIGLSEASPDTIRRAHAVHPITAVQMEWSLLTR-DIEEEIIPLCRELGIGIVPYS 222 (357)
Q Consensus 155 ~~aL~~L~~~--G~ir-~iGvS~~~~~~l~~~~~~~~~~~~q~~~n~~~~-~~~~~~~~~~~~~gi~v~a~s 222 (357)
++.+.+|+++ -.|- +.|=|.++...+.++++..-++++|+...-.-- ....++..+|+.+|+.++.+.
T Consensus 222 ~~~~~~l~~~~~~~iPIa~gE~~~~~~~~~~li~~~a~div~~d~~~~GGit~~~~ia~~A~a~gi~~~~h~ 293 (352)
T cd03328 222 LAGLRLVRERGPAGMDIAAGEYAYTLAYFRRLLEAHAVDVLQADVTRCGGVTGFLQAAALAAAHHVDLSAHC 293 (352)
T ss_pred HHHHHHHHhhCCCCCCEEecccccCHHHHHHHHHcCCCCEEecCccccCCHHHHHHHHHHHHHcCCeeccCc
Confidence 7888888887 3332 455566899999999998888999987665421 123689999999999998763
No 184
>cd08562 GDPD_EcUgpQ_like Glycerophosphodiester phosphodiesterase domain in Escherichia coli cytosolic glycerophosphodiester phosphodiesterase UgpQ and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in Escherichia coli cytosolic glycerophosphodiester phosphodiesterase (GP-GDE, EC 3.1.4.46), UgpQ, and similar proteins. GP-GDE plays an essential role in the metabolic pathway of E. coli. It catalyzes the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols, which are major sources of carbon and phosphate. E. coli possesses two major G3P uptake systems: Glp and Ugp, which contain genes coding for two distinct GP-GDEs. UgpQ gene from the E. coli ugp operon codes for a cytosolic phosphodiesterase GlpQ, which is the prototype of this family. Various glycerophosphodiesters, such as glycerophosphocholine (GPC), glycerophosphoethanolanmine (GPE), glycerophosphoglycerol (GPG)
Probab=27.27 E-value=4.1e+02 Score=23.02 Aligned_cols=19 Identities=21% Similarity=0.429 Sum_probs=16.2
Q ss_pred hhHHHHHHHhCCceeeccc
Q 018374 205 EEIIPLCRELGIGIVPYSP 223 (357)
Q Consensus 205 ~~~~~~~~~~gi~v~a~sp 223 (357)
.++++.++++|+.|.+|.+
T Consensus 189 ~~~v~~~~~~g~~v~~wTv 207 (229)
T cd08562 189 EEQVKALKDAGYKLLVYTV 207 (229)
T ss_pred HHHHHHHHHCCCEEEEEeC
Confidence 4789999999999999854
No 185
>PF02401 LYTB: LytB protein; InterPro: IPR003451 Terpenes are among the largest groups of natural products and include compounds such as vitamins, cholesterol and carotenoids. The biosynthesis of all terpenoids begins with one or both of the two C5 precursors of the pathway: isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP). In animals, fungi, and certain bacteria, the synthesis of IPP and DMAPP occurs via the well-known mevalonate pathway, however, a second, nonmevalonate terpenoid pathway has been identified in many eubacteria, algae and the chloroplasts of higher plants []. LytB(IspH) catalyses the conversion of 1-hydroy-2-methyl-2-(E)-butenyl 4-diphosphate into IPP and DMAPP in this second pathway The enzyme appears to be responsible for a branch-step in the nonmevalonate pathway, in that IPP and DMAPP are produced in parallel from a single precursor although the exact mechanism of this is not currently fully understood []. Escherichia coli LytB protein had been found to regulate the activity of RelA (guanosine 3',5'-bispyrophosphate synthetase I), which in turn controls the level of a regulatory metabolite. It is involved in penicillin tolerance and the stringent response [].; GO: 0019288 isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway, 0055114 oxidation-reduction process; PDB: 3DNF_B 3SZL_B 3KE8_B 3KEF_B 3SZU_A 3KEL_A 3F7T_B 3KE9_B 3KEM_B 3T0G_A ....
Probab=27.21 E-value=1.9e+02 Score=26.80 Aligned_cols=117 Identities=15% Similarity=0.160 Sum_probs=64.5
Q ss_pred HHHHHHHHHc--CccceEecCCCCHHHHHHHhcc----CCceEEecccccccc---chhhhHHHHHHHhCCceeecccCc
Q 018374 155 IGELKMLVVE--GKIKYIGLSEASPDTIRRAHAV----HPITAVQMEWSLLTR---DIEEEIIPLCRELGIGIVPYSPLG 225 (357)
Q Consensus 155 ~~aL~~L~~~--G~ir~iGvS~~~~~~l~~~~~~----~~~~~~q~~~n~~~~---~~~~~~~~~~~~~gi~v~a~spl~ 225 (357)
.+.++.+... .++-.+--++++.+.+.++.+. .+-. ...-+|-++. ..+.+..+++++.++-++.-++-+
T Consensus 143 ~~~~~~l~~~~~~kv~vvsQTT~~~~~~~~i~~~l~~~~~~~-~~~~~nTIC~aT~~RQ~a~~~La~~vD~miVIGg~~S 221 (281)
T PF02401_consen 143 PEDVEKLPISDPKKVAVVSQTTQSVEKFEEIVEALKKRFPEL-EGPVFNTICYATQNRQEAARELAKEVDAMIVIGGKNS 221 (281)
T ss_dssp HHHHHHGGGSSTTCEEEEE-TTS-HHHHHHHHHHHHHHSTCE-E-SCC-S--CHHHHHHHHHHHHHCCSSEEEEES-TT-
T ss_pred hhhhcccCCCCCCeEEEEEeecccHHHHHHHHHHHHHhCccc-cCCCCCCCCHhHHHHHHHHHHHHhhCCEEEEecCCCC
Confidence 3444555433 3666666778888776665443 3322 2122333332 224567777777666555532222
Q ss_pred cccCCCCCcCCCCCCCcccccCCCCCCCcchhhHHHHHHHHHHHHhcCC------ChHHHHHHHHHhCCCCeEEecCCCC
Q 018374 226 RGLLGGKAVVESLPANSFLISHPRFTGENLGKNKQIYARVENLAKRNKC------TPAQLSLAWLLRQGDDIVPIPGTTK 299 (357)
Q Consensus 226 ~G~L~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ia~~~g~------s~~q~al~~~l~~~~v~~~ivG~~~ 299 (357)
+ --..|.++|++++. ++.++...|+-... ...+..|+|+
T Consensus 222 s----------------------------------NT~kL~eia~~~~~~t~~Ie~~~el~~~~l~~~~-~VGItaGAST 266 (281)
T PF02401_consen 222 S----------------------------------NTRKLAEIAKEHGKPTYHIETADELDPEWLKGVK-KVGITAGAST 266 (281)
T ss_dssp H----------------------------------HHHHHHHHHHHCTTCEEEESSGGG--HHHHTT-S-EEEEEE-TTS
T ss_pred c----------------------------------cHHHHHHHHHHhCCCEEEeCCccccCHhHhCCCC-EEEEEccCCC
Confidence 1 11478999998874 68999999987765 4788899999
Q ss_pred HHHHHHHH
Q 018374 300 IKNLDENI 307 (357)
Q Consensus 300 ~~~l~enl 307 (357)
|+.+-+.+
T Consensus 267 P~~ii~eV 274 (281)
T PF02401_consen 267 PDWIIEEV 274 (281)
T ss_dssp -HHHHHHH
T ss_pred CHHHHHHH
Confidence 99876654
No 186
>PF00072 Response_reg: Response regulator receiver domain; InterPro: IPR001789 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. Bipartite response regulator proteins are involved in a two-component signal transduction system in bacteria, and certain eukaryotes like protozoa, that functions to detect and respond to environmental changes []. These systems have been detected during host invasion, drug resistance, motility, phosphate uptake, osmoregulation, and nitrogen fixation, amongst others []. The two-component system consists of a histidine protein kinase environmental sensor that phosphorylates the receiver domain of a response regulator protein; phosphorylation induces a conformational change in the response regulator, which activates the effector domain, triggering the cellular response []. The domains of the two-component proteins are highly modular, but the core structures and activities are maintained. The response regulators act as phosphorylation-activated switches to affect a cellular response, usually by transcriptional regulation. Most of these proteins consist of two domains, an N-terminal response regulator receiver domain, and a variable C-terminal effector domain with DNA-binding activity. This entry represents the response regulator receiver domain, which belongs to the CheY family, and receives the signal from the sensor partner in the two-component system.; GO: 0000156 two-component response regulator activity, 0000160 two-component signal transduction system (phosphorelay), 0006355 regulation of transcription, DNA-dependent; PDB: 2QR3_A 2QXY_A 1I3C_A 1JLK_A 2PKX_A 2PL1_A 3H1F_A 3H1E_A 3GWG_A 3H1G_A ....
Probab=27.10 E-value=1.7e+02 Score=21.57 Aligned_cols=65 Identities=17% Similarity=0.115 Sum_probs=41.3
Q ss_pred HhHhCCCcccEEEeecCCCCCCccccccCCCChhHHHHHHHHHHHcC-ccceEecCCC-CHHHHHHHhccCCceEEeccc
Q 018374 119 LKRLGVDYIDLYYQHRVDPSVPIEDTVCDSLPTSLNIGELKMLVVEG-KIKYIGLSEA-SPDTIRRAHAVHPITAVQMEW 196 (357)
Q Consensus 119 L~~Lg~d~iDl~~lH~pd~~~~~~~~~~~~~~~~~~~~aL~~L~~~G-~ir~iGvS~~-~~~~l~~~~~~~~~~~~q~~~ 196 (357)
++.++....|++++...-+.. .. .+.++.+++.+ .++-|.+++. +.....++++.+-.+++.-++
T Consensus 36 ~~~~~~~~~d~iiid~~~~~~---~~----------~~~~~~i~~~~~~~~ii~~t~~~~~~~~~~~~~~g~~~~l~kp~ 102 (112)
T PF00072_consen 36 LELLKKHPPDLIIIDLELPDG---DG----------LELLEQIRQINPSIPIIVVTDEDDSDEVQEALRAGADDYLSKPF 102 (112)
T ss_dssp HHHHHHSTESEEEEESSSSSS---BH----------HHHHHHHHHHTTTSEEEEEESSTSHHHHHHHHHTTESEEEESSS
T ss_pred HHHhcccCceEEEEEeeeccc---cc----------cccccccccccccccEEEecCCCCHHHHHHHHHCCCCEEEECCC
Confidence 333344559999998654432 22 66677777777 7888888875 567777777655444444333
No 187
>cd01973 Nitrogenase_VFe_beta_like Nitrogenase_VFe_beta -like: Nitrogenase VFe protein, beta subunit like. This group contains proteins similar to the beta subunits of the VFe protein of the vanadium-dependent (V-) nitrogenase. Nitrogenase catalyzes the ATP-dependent reduction of dinitrogen (N2) to ammonia. In addition to V-nitrogenase there is a molybdenum (Mo)-dependent nitrogenase and an iron only (Fe-) nitrogenase. The Mo-nitrogenase is the most widespread and best characterized of these systems. These systems consist of component 1 (VFe protein, FeFe protein or, MoFe protein respectively) and, component 2 (Fe protein). MoFe is an alpha2beta2 tetramer, V-and Fe- nitrogenases are alpha2beta2delta2 hexamers. The alpha and beta subunits of VFe and FeFe are similar to the alpha and beta subunits of MoFe. For MoFe each alphabeta pair contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha subunit. The Fe p
Probab=26.72 E-value=6.4e+02 Score=25.02 Aligned_cols=119 Identities=13% Similarity=0.076 Sum_probs=63.0
Q ss_pred eCccCcCCCchHHHHHHHHhcC----C-CCCeEEEeeeeeccCCCcccccCCCHHHHHHHHHHHHh-HhCCCcccEEEee
Q 018374 60 DTADVYGAHANEVLVGKVLKQL----P-RKKIQLASKFGVVSMAPTSVIVKGTPEYVRSCCEASLK-RLGVDYIDLYYQH 133 (357)
Q Consensus 60 DtA~~Yg~g~sE~~lG~al~~~----~-R~~~~I~tK~~~~~~~~~~~~~~~~~~~i~~~v~~sL~-~Lg~d~iDl~~lH 133 (357)
+....|| .|+-|-++|++. + .+=++|.|-+...-- .-+.+.+.+.+++-++ ...--.+.++.+|
T Consensus 63 E~d~VfG---G~~~L~~~I~~~~~~~~~p~~I~V~tTC~~eiI-------GDDi~~vv~~~~~~~~~e~~~~~~~vi~v~ 132 (454)
T cd01973 63 EDSAVFG---GAKRVEEGVLVLARRYPDLRVIPIITTCSTEII-------GDDIEGVIRKLNEALKEEFPDREVHLIPVH 132 (454)
T ss_pred CCceEEC---cHHHHHHHHHHHHHhcCCCCEEEEECCchHhhh-------ccCHHHHHHHHHhhhhhccCCCCCeEEEee
Confidence 3446788 567777777764 2 233677777654322 1234444444433321 1110147889999
Q ss_pred cCCCCCCccccccCCCChhHHHHHHHH-HHH----cCccceEecCC--CCHHHHHHHhccCCceEEec
Q 018374 134 RVDPSVPIEDTVCDSLPTSLNIGELKM-LVV----EGKIKYIGLSE--ASPDTIRRAHAVHPITAVQM 194 (357)
Q Consensus 134 ~pd~~~~~~~~~~~~~~~~~~~~aL~~-L~~----~G~ir~iGvS~--~~~~~l~~~~~~~~~~~~q~ 194 (357)
.|+.......- +..++++|-+ +.. +++|-=||-.+ -+.++++++++...+.++.+
T Consensus 133 tpgF~Gs~~~G------~~~a~~ali~~~~~~~~~~~~VNii~~~~~~~D~~ei~~lL~~~Gl~v~~~ 194 (454)
T cd01973 133 TPSFKGSMVTG------YDEAVRSVVKTIAKKGAPSGKLNVFTGWVNPGDVVELKHYLSEMDVEANIL 194 (454)
T ss_pred CCCcCCCHHHH------HHHHHHHHHHHhcccCCCCCcEEEECCCCChHHHHHHHHHHHHcCCCEEEe
Confidence 99875422211 1222333322 222 45677776332 24577888888777776644
No 188
>TIGR02082 metH 5-methyltetrahydrofolate--homocysteine methyltransferase. S-methyltransferase (MetE, EC 2.1.1.14, the cobalamin-independent methionine synthase) and betaine-homocysteine methyltransferase.
Probab=26.38 E-value=8.6e+02 Score=27.61 Aligned_cols=102 Identities=13% Similarity=0.056 Sum_probs=57.3
Q ss_pred CHHHHHHHHHHHHhHhCCCcccEEEeecCCCCCCccccccCCCChhHHHHHHHHHHH-cCcc--ceEecCCCCHHHHHHH
Q 018374 107 TPEYVRSCCEASLKRLGVDYIDLYYQHRVDPSVPIEDTVCDSLPTSLNIGELKMLVV-EGKI--KYIGLSEASPDTIRRA 183 (357)
Q Consensus 107 ~~~~i~~~v~~sL~~Lg~d~iDl~~lH~pd~~~~~~~~~~~~~~~~~~~~aL~~L~~-~G~i--r~iGvS~~~~~~l~~~ 183 (357)
+.+.+.+...+. ..-|.+.||+-.= . ...+.++. ++.+..+.+ .-.+ --|-+-++.++.++..
T Consensus 366 d~~~a~~~A~~q-ve~GA~iIDVn~~-~--~~vd~~ee----------m~rvv~~i~~~~~~~~vPlsIDS~~~~v~eaa 431 (1178)
T TIGR02082 366 DYDEALDIAKQQ-VENGAQILDINVD-Y--GMLDGVAA----------MKRFLNLLASEPDISTVPLMLDSSEWAVLEAG 431 (1178)
T ss_pred CHHHHHHHHHHH-HHCCCCEEEECCC-C--CCCCHHHH----------HHHHHHHHHhccCCCCCeEEEeCCcHHHHHHH
Confidence 344444444333 3568899998752 1 11111112 333333333 2212 2367778899999999
Q ss_pred hccCCceEEecccccccc-chhhhHHHHHHHhCCceeecc
Q 018374 184 HAVHPITAVQMEWSLLTR-DIEEEIIPLCRELGIGIVPYS 222 (357)
Q Consensus 184 ~~~~~~~~~q~~~n~~~~-~~~~~~~~~~~~~gi~v~a~s 222 (357)
++..+=..+-...|...- ....++++.+++.|..++.+.
T Consensus 432 Lk~~~G~~IINsIs~~~g~~~~~~~~~l~~~yga~vV~m~ 471 (1178)
T TIGR02082 432 LKCIQGKCIVNSISLKDGEERFIETAKLIKEYGAAVVVMA 471 (1178)
T ss_pred HHhcCCCCEEEeCCCCCCCccHHHHHHHHHHhCCCEEEEe
Confidence 987322233445555431 112479999999999999874
No 189
>PF00762 Ferrochelatase: Ferrochelatase; InterPro: IPR001015 Synonym(s): Protohaem ferro-lyase, Iron chelatase, etc. Ferrochelatase catalyses the last step in haem biosynthesis: the chelation of a ferrous ion to proto-porphyrin IX, to form protohaem [, ]. In eukaryotic cells, it binds to the mitochondrial inner membrane with its active site on the matrix side of the membrane. The X-ray structure of Bacillus subtilis and human ferrochelatase have been solved [, ]. The human enzyme exists as a homodimer. Each subunit contains one [2Fe-2S] cluster. The monomer is folded into two similar domains, each with a four-stranded parallel beta-sheet flanked by an alpha-helix in a beta-alpha-beta motif that is reminiscent of the fold found in the periplasmic binding proteins. The topological similarity between the domains suggests that they have arisen from a gene duplication event. However, significant differences exist between the two domains, including an N-terminal section (residues 80-130) that forms part of the active site pocket, and a C-terminal extension (residues 390-423) that is involved in coordination of the [2Fe-2S] cluster and in stabilisation of the homodimer. Ferrochelatase seems to have a structurally conserved core region that is common to the enzyme from bacteria, plants and mammals. Porphyrin binds in the identified cleft; this cleft also includes the metal-binding site of the enzyme. It is likely that the structure of the cleft region will have different conformations upon substrate binding and release [].; GO: 0004325 ferrochelatase activity, 0006783 heme biosynthetic process; PDB: 2QD3_B 2HRE_C 3HCN_B 2PNJ_A 2QD1_C 1HRK_A 2QD4_B 3AQI_B 2HRC_B 3HCO_B ....
Probab=26.37 E-value=3.1e+02 Score=25.76 Aligned_cols=90 Identities=22% Similarity=0.229 Sum_probs=54.2
Q ss_pred HHHHHHHHHHHHhHhCCCcccEEEeecCCCCCCccccccCCCChhHHHHHHHHHHHcCccceEecC--CCCHHHHHHHhc
Q 018374 108 PEYVRSCCEASLKRLGVDYIDLYYQHRVDPSVPIEDTVCDSLPTSLNIGELKMLVVEGKIKYIGLS--EASPDTIRRAHA 185 (357)
Q Consensus 108 ~~~i~~~v~~sL~~Lg~d~iDl~~lH~pd~~~~~~~~~~~~~~~~~~~~aL~~L~~~G~ir~iGvS--~~~~~~l~~~~~ 185 (357)
.+.+.+.++...++||.....+-+--..++..++... +-+.|++|.++| ++.|=|- +|-.+.++-+.+
T Consensus 206 ~~~~~~t~~~i~~~l~~~~~~~~fQS~~g~~~WL~P~---------~~~~l~~l~~~G-~~~V~v~p~gFv~D~lETl~e 275 (316)
T PF00762_consen 206 PAQCEETARLIAERLGLPEWRLAFQSRFGPGEWLGPS---------TEDVLEELAKEG-VKRVVVVPPGFVSDCLETLYE 275 (316)
T ss_dssp HHHHHHHHHHHHHHTTTSSEEEEEES-SSSS-BSSSB---------HHHHHHHHHHCT--SEEEEEETT-SSSSHHHHCC
T ss_pred HHHHHHHHHHHHHHcCCCceEEEEECCCCCCCCcccc---------HHHHHHHHHhcC-CCeEEEECCccccccHhHHHH
Confidence 5678888888889999877565555445554444332 278899999999 5555442 244444444422
Q ss_pred cCCceEEeccccccccchhhhHHHHHHHhCCceeecccC
Q 018374 186 VHPITAVQMEWSLLTRDIEEEIIPLCRELGIGIVPYSPL 224 (357)
Q Consensus 186 ~~~~~~~q~~~n~~~~~~~~~~~~~~~~~gi~v~a~spl 224 (357)
+ +.+..+.+.++|+.-..+-|-
T Consensus 276 ---i--------------die~re~~~~~G~~~~~~ip~ 297 (316)
T PF00762_consen 276 ---I--------------DIEYRELAEEAGGEEFVRIPC 297 (316)
T ss_dssp ---C--------------CCHHHHHHHHHTCCEEEE---
T ss_pred ---H--------------HHHHHHHHHHcCCceEEEeCC
Confidence 1 235678899999966665444
No 190
>PRK09240 thiH thiamine biosynthesis protein ThiH; Reviewed
Probab=26.27 E-value=5.9e+02 Score=24.45 Aligned_cols=100 Identities=18% Similarity=0.101 Sum_probs=53.9
Q ss_pred cCCCHHHHHHHHHHHHhHhCCCcccEEEeecCCCCCCccccccCCCChhHHHHHHHHHHHcCccceEecCC--CCHHHHH
Q 018374 104 VKGTPEYVRSCCEASLKRLGVDYIDLYYQHRVDPSVPIEDTVCDSLPTSLNIGELKMLVVEGKIKYIGLSE--ASPDTIR 181 (357)
Q Consensus 104 ~~~~~~~i~~~v~~sL~~Lg~d~iDl~~lH~pd~~~~~~~~~~~~~~~~~~~~aL~~L~~~G~ir~iGvS~--~~~~~l~ 181 (357)
...+.+.|.+.++.. ...|+..+-+.-=..| ...+.+.. .+.++.+++.- ..++++. .+.+.++
T Consensus 102 ~~ls~eEI~~~a~~~-~~~Gv~~i~lvgGe~p-~~~~~e~l----------~~~i~~Ik~~~--p~i~i~~g~lt~e~l~ 167 (371)
T PRK09240 102 KTLDEEEIEREMAAI-KKLGFEHILLLTGEHE-AKVGVDYI----------RRALPIAREYF--SSVSIEVQPLSEEEYA 167 (371)
T ss_pred ccCCHHHHHHHHHHH-HhCCCCEEEEeeCCCC-CCCCHHHH----------HHHHHHHHHhC--CCceeccCCCCHHHHH
Confidence 357888888888764 4568777655431112 11233334 66667676542 2344433 5677776
Q ss_pred HHhccC--CceEEecccc-----ccc-----cchh--hhHHHHHHHhCCc
Q 018374 182 RAHAVH--PITAVQMEWS-----LLT-----RDIE--EEIIPLCRELGIG 217 (357)
Q Consensus 182 ~~~~~~--~~~~~q~~~n-----~~~-----~~~~--~~~~~~~~~~gi~ 217 (357)
.+.+.+ .+.++|-.+| -++ +..+ .+.++.+++.|+.
T Consensus 168 ~Lk~aGv~r~~i~lET~~~~~~~~i~~~g~~h~~~~rl~~i~~a~~aG~~ 217 (371)
T PRK09240 168 ELVELGLDGVTVYQETYNPATYAKHHLRGPKRDFEYRLETPERAGRAGIR 217 (371)
T ss_pred HHHHcCCCEEEEEEecCCHHHHHHhCcCCCCCCHHHHHHHHHHHHHcCCC
Confidence 665543 2233333332 121 1222 4677888888886
No 191
>PRK09061 D-glutamate deacylase; Validated
Probab=26.10 E-value=4.7e+02 Score=26.40 Aligned_cols=114 Identities=7% Similarity=0.022 Sum_probs=63.6
Q ss_pred HHHHHHHHHHHcCCCeEeCccCcCCCchHHHHHHHHhcCCCCCeEEEeeeeeccCCCcccccCCCHHHHHHHHHHHHhHh
Q 018374 43 DGISIIKHAFNKGITFFDTADVYGAHANEVLVGKVLKQLPRKKIQLASKFGVVSMAPTSVIVKGTPEYVRSCCEASLKRL 122 (357)
Q Consensus 43 ~~~~~l~~A~~~Gin~~DtA~~Yg~g~sE~~lG~al~~~~R~~~~I~tK~~~~~~~~~~~~~~~~~~~i~~~v~~sL~~L 122 (357)
+..++++.|++.|+..|=+...|-.+.+...+-+.++...+....|........ ..+.....+++++.++.-
T Consensus 170 ~m~~ll~~al~~Ga~gis~~~~y~p~~~~~eL~~l~~~A~~~g~~v~~H~e~~~--------~~~~~~e~~av~~~i~lA 241 (509)
T PRK09061 170 EILELLEQGLDEGALGIGIGAGYAPGTGHKEYLELARLAARAGVPTYTHVRYLS--------NVDPRSSVDAYQELIAAA 241 (509)
T ss_pred HHHHHHHHHHHCCCCEEecCCccCCCCCHHHHHHHHHHHHHcCCEEEEEecCcc--------cCCchhHHHHHHHHHHHH
Confidence 367778889999999998766675455666676666655555666666553221 011222233444444433
Q ss_pred CCCcccEEEeecCCCCCCccccccCCCChhHHHHHHHHHHHcCccceEecC
Q 018374 123 GVDYIDLYYQHRVDPSVPIEDTVCDSLPTSLNIGELKMLVVEGKIKYIGLS 173 (357)
Q Consensus 123 g~d~iDl~~lH~pd~~~~~~~~~~~~~~~~~~~~aL~~L~~~G~ir~iGvS 173 (357)
...-.-+...|--..... ...++++.+++++++|.--..-++
T Consensus 242 ~~~G~rv~IsHlss~g~~---------~~~~~le~I~~Ar~~Gi~Vt~e~~ 283 (509)
T PRK09061 242 AETGAHMHICHVNSTSLR---------DIDRCLALVEKAQAQGLDVTTEAY 283 (509)
T ss_pred HHhCCCEEEEeeccCCcc---------cHHHHHHHHHHHHHcCCcEEEEec
Confidence 222233566666432110 123448888889998853333333
No 192
>COG2040 MHT1 Homocysteine/selenocysteine methylase (S-methylmethionine-dependent) [Amino acid transport and metabolism]
Probab=26.01 E-value=5.4e+02 Score=23.96 Aligned_cols=166 Identities=15% Similarity=0.077 Sum_probs=95.2
Q ss_pred CHHHHHHHHHHHHHcCCCeEeCccCcCC---CchHHHHHHHHhc--------------C-CCCCeEEEeeeeeccCCCc-
Q 018374 40 SEEDGISIIKHAFNKGITFFDTADVYGA---HANEVLVGKVLKQ--------------L-PRKKIQLASKFGVVSMAPT- 100 (357)
Q Consensus 40 ~~~~~~~~l~~A~~~Gin~~DtA~~Yg~---g~sE~~lG~al~~--------------~-~R~~~~I~tK~~~~~~~~~- 100 (357)
.++..+++-..++++|-+.++|+. |.. |.+|++-.+-+++ . ..+...|+--+|+....-.
T Consensus 41 ~peiv~~vh~df~~aGa~ii~T~T-Yqa~~~~~~e~~~~~~~~~l~~~sv~la~~ard~~g~~~~~iagsiGP~ga~~a~ 119 (300)
T COG2040 41 EPEIVRNVHADFLRAGADIITTAT-YQATPEGFAERVSEDEAKQLIRRSVELARAARDAYGEENQNIAGSLGPYGAALAD 119 (300)
T ss_pred CHHHHHHHHHHHHHhcCcEEeehh-hhcCHHHHHHhcchhHHHHHHHHHHHHHHHHHHHhcccccccceeccchhhhcCh
Confidence 345567788889999999999884 542 2233322222222 1 2333445555555443221
Q ss_pred --ccccCCCHHHHHHHHHHHHhHhCCCcccEEEeecCCCCCCccccccCCCChhHHHHHHHHHHHcCccceEecCCC---
Q 018374 101 --SVIVKGTPEYVRSCCEASLKRLGVDYIDLYYQHRVDPSVPIEDTVCDSLPTSLNIGELKMLVVEGKIKYIGLSEA--- 175 (357)
Q Consensus 101 --~~~~~~~~~~i~~~v~~sL~~Lg~d~iDl~~lH~pd~~~~~~~~~~~~~~~~~~~~aL~~L~~~G~ir~iGvS~~--- 175 (357)
+..+..+.+.+.+-.+.-++.|.-.-+|++.+.-...-+..+.+ .+++++. ++=-+|+++-.
T Consensus 120 Ey~g~Y~~~~d~~~~fh~~rie~l~~ag~Dlla~ETip~i~Ea~Ai----------v~l~~~~---s~p~wISfT~~d~~ 186 (300)
T COG2040 120 EYRGDYGASQDALYKFHRPRIEALNEAGADLLACETLPNITEAEAI----------VQLVQEF---SKPAWISFTLNDDT 186 (300)
T ss_pred hhcCccCccHHHHHHHHHHHHHHHHhCCCcEEeecccCChHHHHHH----------HHHHHHh---CCceEEEEEeCCCC
Confidence 12356677878888888888898888999988776433222222 4444444 77778888754
Q ss_pred ------CHHHHHHHhccC-CceEEeccccccccchhhhHHHHH--HHhCCceeec
Q 018374 176 ------SPDTIRRAHAVH-PITAVQMEWSLLTRDIEEEIIPLC--RELGIGIVPY 221 (357)
Q Consensus 176 ------~~~~l~~~~~~~-~~~~~q~~~n~~~~~~~~~~~~~~--~~~gi~v~a~ 221 (357)
+.......++.. ++..+.+.+...++ -...++.. ...++++++|
T Consensus 187 ~lr~Gt~l~eaa~~~~~~~~iaa~gvNC~~p~~--~~a~i~~l~~~~~~~piivY 239 (300)
T COG2040 187 RLRDGTPLSEAAAILAGLPNIAALGVNCCHPDH--IPAAIEELSKLLTGKPIIVY 239 (300)
T ss_pred ccCCCccHHHHHHHHhcCcchhheeeccCChhh--hHHHHHHHHhcCCCCceEEc
Confidence 222333333333 45555555544444 23556665 3447888887
No 193
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=25.93 E-value=6.1e+02 Score=27.48 Aligned_cols=96 Identities=13% Similarity=0.215 Sum_probs=53.9
Q ss_pred CHHHHHHHHHHHHhHhCCCcccEEEeecCCCCCCccccccCCCChhHHHHHHHHHHHc--CccceEecCCCCHHHHHHHh
Q 018374 107 TPEYVRSCCEASLKRLGVDYIDLYYQHRVDPSVPIEDTVCDSLPTSLNIGELKMLVVE--GKIKYIGLSEASPDTIRRAH 184 (357)
Q Consensus 107 ~~~~i~~~v~~sL~~Lg~d~iDl~~lH~pd~~~~~~~~~~~~~~~~~~~~aL~~L~~~--G~ir~iGvS~~~~~~l~~~~ 184 (357)
+.+.|++-.++....--....-+|.|+..+..+. ++.++|.+..++ ..+..|.+++.....+..+.
T Consensus 101 ~Vd~iR~l~~~~~~~p~~~~~KV~IIDEad~lt~------------~a~NaLLK~LEEpP~~~~fIl~tt~~~kLl~TIr 168 (824)
T PRK07764 101 GVDDARELRERAFFAPAESRYKIFIIDEAHMVTP------------QGFNALLKIVEEPPEHLKFIFATTEPDKVIGTIR 168 (824)
T ss_pred CHHHHHHHHHHHHhchhcCCceEEEEechhhcCH------------HHHHHHHHHHhCCCCCeEEEEEeCChhhhhHHHH
Confidence 4566665444433222224557788887765432 237788888887 88889988864433333333
Q ss_pred ccCCceEEeccccccccch-hhhHHHHHHHhCCce
Q 018374 185 AVHPITAVQMEWSLLTRDI-EEEIIPLCRELGIGI 218 (357)
Q Consensus 185 ~~~~~~~~q~~~n~~~~~~-~~~~~~~~~~~gi~v 218 (357)
+ -+..+.|..+.... ..-+...|++.||.+
T Consensus 169 S----Rc~~v~F~~l~~~~l~~~L~~il~~EGv~i 199 (824)
T PRK07764 169 S----RTHHYPFRLVPPEVMRGYLERICAQEGVPV 199 (824)
T ss_pred h----heeEEEeeCCCHHHHHHHHHHHHHHcCCCC
Confidence 2 24456677665431 123445566667653
No 194
>cd07940 DRE_TIM_IPMS 2-isopropylmalate synthase (IPMS), N-terminal catalytic TIM barrel domain. 2-isopropylmalate synthase (IPMS) catalyzes an aldol-type condensation of acetyl-CoA and 2-oxoisovalerate yielding 2-isopropylmalate and CoA, the first committed step in leucine biosynthesis. This family includes the Arabidopsis thaliana IPMS1 and IPMS2 proteins, the Glycine max GmN56 protein, and the Brassica insularis BatIMS protein. This family also includes a group of archeal IPMS-like proteins represented by the Methanocaldococcus jannaschii AksA protein. AksA catalyzes the condensation of alpha-ketoglutarate and acetyl-CoA to form trans-homoaconitate, one of 13 steps in the conversion of alpha-ketoglutarate and acetylCoA to alpha-ketosuberate, a precursor to coenzyme B and biotin. AksA also catalyzes the condensation of alpha-ketoadipate or alpha-ketopimelate with acetylCoA to form, respectively, the (R)-homocitrate homologs (R)-2-hydroxy-1,2,5-pentanetricarboxylic acid and (R)-2-h
Probab=25.84 E-value=4.4e+02 Score=23.88 Aligned_cols=98 Identities=18% Similarity=0.194 Sum_probs=0.0
Q ss_pred cCCCHHHHHHHHHHHHhHhCCCcccEEEee-cCCCCCCccccccCCCChhHHHHHHHHHHH-cCccceEecCCCCHHHHH
Q 018374 104 VKGTPEYVRSCCEASLKRLGVDYIDLYYQH-RVDPSVPIEDTVCDSLPTSLNIGELKMLVV-EGKIKYIGLSEASPDTIR 181 (357)
Q Consensus 104 ~~~~~~~i~~~v~~sL~~Lg~d~iDl~~lH-~pd~~~~~~~~~~~~~~~~~~~~aL~~L~~-~G~ir~iGvS~~~~~~l~ 181 (357)
..++.+...+-++. |.++|+++|.+-+.- ++++ ++.++.+.+ ...++..+++......++
T Consensus 15 ~~~~~~~k~~i~~~-L~~~Gv~~iEvg~~~~~~~~-----------------~~~~~~l~~~~~~~~~~~l~r~~~~~v~ 76 (268)
T cd07940 15 VSLTPEEKLEIARQ-LDELGVDVIEAGFPAASPGD-----------------FEAVKRIAREVLNAEICGLARAVKKDID 76 (268)
T ss_pred CCCCHHHHHHHHHH-HHHcCCCEEEEeCCCCCHHH-----------------HHHHHHHHHhCCCCEEEEEccCCHhhHH
Q ss_pred HHhccCC---ceEEecccccccc--------------chhhhHHHHHHHhCCcee
Q 018374 182 RAHAVHP---ITAVQMEWSLLTR--------------DIEEEIIPLCRELGIGIV 219 (357)
Q Consensus 182 ~~~~~~~---~~~~q~~~n~~~~--------------~~~~~~~~~~~~~gi~v~ 219 (357)
.+.+... ++.+.+-+++-+. ..-.+.+.+++++|+.+.
T Consensus 77 ~a~~~~~~~~~~~i~i~~~~s~~~~~~~~~~~~~~~~~~~~~~i~~a~~~G~~v~ 131 (268)
T cd07940 77 AAAEALKPAKVDRIHTFIATSDIHLKYKLKKTREEVLERAVEAVEYAKSHGLDVE 131 (268)
T ss_pred HHHHhCCCCCCCEEEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCeEE
No 195
>PRK12360 4-hydroxy-3-methylbut-2-enyl diphosphate reductase; Provisional
Probab=25.81 E-value=3.8e+02 Score=24.84 Aligned_cols=116 Identities=16% Similarity=0.140 Sum_probs=68.5
Q ss_pred HHHHHHHHHcCccceEecCCCCHHHHHHHhccC--CceEEecccccccc---chhhhHHHHHHHhCCceeecccCccccC
Q 018374 155 IGELKMLVVEGKIKYIGLSEASPDTIRRAHAVH--PITAVQMEWSLLTR---DIEEEIIPLCRELGIGIVPYSPLGRGLL 229 (357)
Q Consensus 155 ~~aL~~L~~~G~ir~iGvS~~~~~~l~~~~~~~--~~~~~q~~~n~~~~---~~~~~~~~~~~~~gi~v~a~spl~~G~L 229 (357)
.+.++.|.-..++..+--++.+.+.+.++.+.- .+.-+.+ +|-++. +.+....+++++.++-++.-+.-++
T Consensus 147 ~~d~~~l~~~~kv~~vsQTT~~~~~~~~iv~~l~~~~~~~~v-~~TIC~aT~~RQ~a~~~La~~vD~miVVGg~~Ss--- 222 (281)
T PRK12360 147 IEEVENIPFLDKACVVAQTTIIPELWEDILNVIKLKSKELVF-FNTICSATKKRQESAKELSKEVDVMIVIGGKHSS--- 222 (281)
T ss_pred HHHHhhCccccCEEEEECCCCcHHHHHHHHHHHHHhCccccc-CCCcchhhhhHHHHHHHHHHhCCEEEEecCCCCc---
Confidence 344444433345555555667777766654431 1111111 233332 2346788888887776665332221
Q ss_pred CCCCcCCCCCCCcccccCCCCCCCcchhhHHHHHHHHHHHHhcCC------ChHHHHHHHHHhCCCCeEEecCCCCHHHH
Q 018374 230 GGKAVVESLPANSFLISHPRFTGENLGKNKQIYARVENLAKRNKC------TPAQLSLAWLLRQGDDIVPIPGTTKIKNL 303 (357)
Q Consensus 230 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ia~~~g~------s~~q~al~~~l~~~~v~~~ivG~~~~~~l 303 (357)
+ -..|.++|.+.+. ++.++-..|+.... .+.+..|+|+|+.+
T Consensus 223 ------------------------N-------T~rL~eia~~~~~~t~~Ie~~~el~~~~~~~~~-~VGitaGASTP~~l 270 (281)
T PRK12360 223 ------------------------N-------TQKLVKICEKNCPNTFHIETADELDLEMLKDYK-IIGITAGASTPDWI 270 (281)
T ss_pred ------------------------c-------HHHHHHHHHHHCCCEEEECChHHCCHHHhCCCC-EEEEEccCCCCHHH
Confidence 0 0378888888764 58888889997654 46888999999977
Q ss_pred HHH
Q 018374 304 DEN 306 (357)
Q Consensus 304 ~en 306 (357)
-+.
T Consensus 271 i~e 273 (281)
T PRK12360 271 IEE 273 (281)
T ss_pred HHH
Confidence 554
No 196
>PRK05414 urocanate hydratase; Provisional
Probab=25.54 E-value=1.2e+02 Score=30.44 Aligned_cols=117 Identities=17% Similarity=0.199 Sum_probs=77.1
Q ss_pred HHHHHHHHHcCCCeEe--CccCcC--------CCchHHHHHHHHhcC----CCCCeEEEeeeeeccCCCcc---------
Q 018374 45 ISIIKHAFNKGITFFD--TADVYG--------AHANEVLVGKVLKQL----PRKKIQLASKFGVVSMAPTS--------- 101 (357)
Q Consensus 45 ~~~l~~A~~~Gin~~D--tA~~Yg--------~g~sE~~lG~al~~~----~R~~~~I~tK~~~~~~~~~~--------- 101 (357)
-+-+...-+.|+..+= ||..|- +|.-|.++ .+-++. .+-+++|+.=+|......+.
T Consensus 115 ~e~f~~l~~~Gl~mYGQMTAGsw~YIG~QGIvqGTyeT~~-~a~rk~f~g~L~G~~~lTaGLGGMgGAQPlA~~mag~v~ 193 (556)
T PRK05414 115 WEHFNELEAKGLTMYGQMTAGSWIYIGSQGIVQGTYETFA-EAARQHFGGDLAGRLVLTAGLGGMGGAQPLAATMAGAVC 193 (556)
T ss_pred HHHHHHHHHcccccccCccccceeEEcCceeeecHHHHHH-HHHHHhcCCCCceeEEEEecCCccccccHHHHHhcCceE
Confidence 3445666777887663 554442 14445444 444433 46788888888766554321
Q ss_pred cccCCCHHHHHHHHHHHHhHhCCCcccEEEeecCCCCCCccccccCCCChhHHHHHHHHHHHcCccceEecCCCCHHHHH
Q 018374 102 VIVKGTPEYVRSCCEASLKRLGVDYIDLYYQHRVDPSVPIEDTVCDSLPTSLNIGELKMLVVEGKIKYIGLSEASPDTIR 181 (357)
Q Consensus 102 ~~~~~~~~~i~~~v~~sL~~Lg~d~iDl~~lH~pd~~~~~~~~~~~~~~~~~~~~aL~~L~~~G~ir~iGvS~~~~~~l~ 181 (357)
...+.++..|++ |+.+.|+|.+- ..+++. ++.+++.+++|+..+||+-.--.+.++
T Consensus 194 i~vEvd~~ri~k-------R~~~gyld~~~-------~~Ldea----------l~~~~~a~~~~~~~SIg~~GNaadv~~ 249 (556)
T PRK05414 194 LAVEVDESRIDK-------RLRTGYLDEKA-------DDLDEA----------LALAEEAKAAGEPLSIGLLGNAADVLP 249 (556)
T ss_pred EEEEECHHHHHH-------HHhCCcceeEc-------CCHHHH----------HHHHHHHHHcCCceEEEEeccHHHHHH
Confidence 123455555554 66778888653 334555 999999999999999999998888888
Q ss_pred HHhcc
Q 018374 182 RAHAV 186 (357)
Q Consensus 182 ~~~~~ 186 (357)
++++.
T Consensus 250 ~l~~~ 254 (556)
T PRK05414 250 ELVRR 254 (556)
T ss_pred HHHHc
Confidence 88776
No 197
>COG1751 Uncharacterized conserved protein [Function unknown]
Probab=25.46 E-value=2.3e+02 Score=23.70 Aligned_cols=73 Identities=15% Similarity=0.155 Sum_probs=44.8
Q ss_pred CHHHHHHHHHHHHHcCCCeEeCccCcCCCchHHHHHHHHhcCCCCCeEEEeee-eeccCCCcccccCCCHHHHHHHHHHH
Q 018374 40 SEEDGISIIKHAFNKGITFFDTADVYGAHANEVLVGKVLKQLPRKKIQLASKF-GVVSMAPTSVIVKGTPEYVRSCCEAS 118 (357)
Q Consensus 40 ~~~~~~~~l~~A~~~Gin~~DtA~~Yg~g~sE~~lG~al~~~~R~~~~I~tK~-~~~~~~~~~~~~~~~~~~i~~~v~~s 118 (357)
.++..+-++++|-+.||.+|=.|+.||. +-.-+-+.+.. . =++++.|-- |.... +...+.+.+++-
T Consensus 12 T~~tle~a~erA~elgik~~vVAS~tG~--tA~k~lemveg-~-lkvVvVthh~Gf~e~---------g~~e~~~E~~~~ 78 (186)
T COG1751 12 TDETLEIAVERAKELGIKHIVVASSTGY--TALKALEMVEG-D-LKVVVVTHHAGFEEK---------GTQEMDEEVRKE 78 (186)
T ss_pred hHHHHHHHHHHHHhcCcceEEEEecccH--HHHHHHHhccc-C-ceEEEEEeecccccC---------CceecCHHHHHH
Confidence 4555677788889999999999999983 32222222221 1 234444443 43322 233456778888
Q ss_pred HhHhCCC
Q 018374 119 LKRLGVD 125 (357)
Q Consensus 119 L~~Lg~d 125 (357)
|+..|.+
T Consensus 79 L~erGa~ 85 (186)
T COG1751 79 LKERGAK 85 (186)
T ss_pred HHHcCce
Confidence 8888843
No 198
>PRK02301 putative deoxyhypusine synthase; Provisional
Probab=25.39 E-value=2.1e+02 Score=26.95 Aligned_cols=70 Identities=14% Similarity=0.240 Sum_probs=40.0
Q ss_pred CCCceecCCCCcccccce--eccccccCCCCCCCCHHHHHHHHHHHH-HcCCCeEeCccCcCCCchHHHHHHHHhcCCCC
Q 018374 8 QAPRVKLGTQGLEVSKLG--FGCMGLTGMYNSPVSEEDGISIIKHAF-NKGITFFDTADVYGAHANEVLVGKVLKQLPRK 84 (357)
Q Consensus 8 ~m~~~~lg~tg~~vs~lg--lG~~~~g~~~~~~~~~~~~~~~l~~A~-~~Gin~~DtA~~Yg~g~sE~~lG~al~~~~R~ 84 (357)
+++...+ +.++++..|. +..+.|. .. ...+|.+++...+ +.+.+.|= .|.+...-.-++..++.+-|+
T Consensus 13 ~v~~~~~-~~~~~v~~l~~~~~~~gF~----A~-~l~~A~~i~~~ml~~~~~~ifL---~~tg~mvsaGlr~ii~~Li~~ 83 (316)
T PRK02301 13 PVKQAEV-RPGMTVGELVREYGGAGFG----AG-RLAEAVDIYEEMLADDDVTKFF---GLAGAMVPAGMRGIVSDLIRD 83 (316)
T ss_pred CCCCCCC-CCCCcHHHHHHHHHhcCcc----HH-HHHHHHHHHHHHHhCCCCeEEE---EcccchhHHHHHHHHHHHHHc
Confidence 3444455 4666776663 3322221 11 5678999999998 56666543 233334556677777776444
Q ss_pred Ce
Q 018374 85 KI 86 (357)
Q Consensus 85 ~~ 86 (357)
.+
T Consensus 84 ~~ 85 (316)
T PRK02301 84 GH 85 (316)
T ss_pred CC
Confidence 43
No 199
>PF10668 Phage_terminase: Phage terminase small subunit; InterPro: IPR018925 This entry describes the terminase small subunit from Enterococcus phage phiFL1A, related proteins in other bacteriophage, and prophage regions of bacterial genomes. Packaging of double-stranded viral DNA concatemers requires interaction of the prohead with virus DNA. This process is mediated by a phage-encoded DNA recognition and terminase protein. The terminase enzymes described so far, which are hetero-oligomers composed of a small and a large subunit, do not have a significant level of sequence homology. The small terminase subunit is thought to form a nucleoprotein structure that helps to position the terminase large subunit at the packaging initiation site [].
Probab=25.36 E-value=1.3e+02 Score=20.89 Aligned_cols=17 Identities=6% Similarity=0.346 Sum_probs=15.2
Q ss_pred HHHHHHHhcCCChHHHH
Q 018374 264 RVENLAKRNKCTPAQLS 280 (357)
Q Consensus 264 ~l~~ia~~~g~s~~q~a 280 (357)
.+.+||+++|++..+|-
T Consensus 24 ~lkdIA~~Lgvs~~tIr 40 (60)
T PF10668_consen 24 KLKDIAEKLGVSESTIR 40 (60)
T ss_pred cHHHHHHHHCCCHHHHH
Confidence 68999999999998875
No 200
>PF01402 RHH_1: Ribbon-helix-helix protein, copG family; InterPro: IPR002145 CopG, also known as RepA, is responsible for the regulation of plasmid copy number. It binds to the repAB promoter and controls synthesis of the plasmid replication initiator protein RepB. Many bacterial transcription regulation proteins bind DNA through a 'helix-turn-helix' motif, nevertheless CopG displays a fully defined HTH-motif structure that is involved not in DNA-binding, but in the maintenance of the intrinsic dimeric functional structure and cooperativity [, ].; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 2BJ3_B 2BJ8_A 2BJ1_A 2BJ9_A 2BJ7_B 1EA4_L 2CPG_C 1B01_B 2BA3_A 2K9I_B ....
Probab=25.29 E-value=1.1e+02 Score=18.39 Aligned_cols=22 Identities=27% Similarity=0.489 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHhcCCChHHHH
Q 018374 259 KQIYARVENLAKRNKCTPAQLS 280 (357)
Q Consensus 259 ~~~~~~l~~ia~~~g~s~~q~a 280 (357)
.+..+.|.++|++.|.|.+++.
T Consensus 8 ~~~~~~l~~~a~~~g~s~s~~i 29 (39)
T PF01402_consen 8 DELYERLDELAKELGRSRSELI 29 (39)
T ss_dssp HHHHHHHHHHHHHHTSSHHHHH
T ss_pred HHHHHHHHHHHHHHCcCHHHHH
Confidence 3567899999999999988754
No 201
>PRK08776 cystathionine gamma-synthase; Provisional
Probab=25.29 E-value=3.6e+02 Score=26.20 Aligned_cols=73 Identities=15% Similarity=0.103 Sum_probs=46.3
Q ss_pred HHHHHHHHHcCccceEecCCCCHHHHHHHhcc-CCceEEeccccccccch-hhhHHHHHHHhCCceeecccCccc
Q 018374 155 IGELKMLVVEGKIKYIGLSEASPDTIRRAHAV-HPITAVQMEWSLLTRDI-EEEIIPLCRELGIGIVPYSPLGRG 227 (357)
Q Consensus 155 ~~aL~~L~~~G~ir~iGvS~~~~~~l~~~~~~-~~~~~~q~~~n~~~~~~-~~~~~~~~~~~gi~v~a~spl~~G 227 (357)
+..++.+.+.+.++.+-+...+.+.+++.+.. ..+.++..+-|+.-.-. -.++.++|+++|+-++.=...+.|
T Consensus 113 ~~~~~~~~~~~g~~v~~v~~~d~~~l~~~i~~~tklV~l~~P~NPtG~v~dl~~I~~la~~~gi~vIvD~a~a~~ 187 (405)
T PRK08776 113 WRLFNALAKKGHFALITADLTDPRSLADALAQSPKLVLIETPSNPLLRITDLRFVIEAAHKVGALTVVDNTFLSP 187 (405)
T ss_pred HHHHHHHHHhcCcEEEEECCCCHHHHHHhcCcCCeEEEEECCCCCCCccCCHHHHHHHHHHcCCEEEEECCCccc
Confidence 66666665556566666665678888887753 23333334445543321 267899999999999876665544
No 202
>PF00809 Pterin_bind: Pterin binding enzyme This Prosite entry is a subset of the Pfam family; InterPro: IPR000489 The ~250-residue pterin-binding domain has been shown to adopt a (beta/alpha)8 barrel fold, which has the overall shape of a distorted cylinder. It has eight alpha-helices stacked around the outside of an inner cylinder of parallel beta-strands. The pterin ring binds at the bottom of the (beta/alpha;)8 barrel in a polar cup-like region that is relatively solvent exposed and fairly negatively charged. The pterin ring is partially buried within the (beta/alpha)8 barrel. The pterin binding residues are highly conserved and include aspartate and asparagine residues located at the C terminus of the beta-strands of the barrel, which are predicted to form hydrogen bonds with the nitrogen and oxygen atoms of the pterin ring [, , ]. Some proteins known to contain a pterin-binding domain are listed below: Prokaryotic and eukaryotic B12-dependent methionine synthase (MetH) (2.1.1.13 from EC), a large, modular protein that catalyzes the transfer of a methyl group from methyltetrahydrofolate (CH3-H4folate) to Hcy to form methionine, using cobalamin as an intermediate methyl carrier. Prokaryotic and eukaryotic dihydropteroate synthase (DHPS) (2.5.1.15 from EC). It catalyzes the condensation of para-aminobenzoic acid (pABA) with 7,8- dihydropterin-pyrophosphate (DHPPP), eliminating pyrophosphate to form 7,8- dihydropteroate which is subsequently converted to tetrahydrofolate. Moorella thermoacetica 5-methyltetrahydrofolate corrinoid/iron sulphur protein methyltransferase (MeTr). It transfers the N5-methyl group from CH3-H4folate to a cob(I)amide centre in another protein, the corrinoid iron sulphur protein. ; GO: 0042558 pteridine-containing compound metabolic process; PDB: 2VP8_B 2BMB_A 2Y5S_B 2Y5J_A 3BOF_B 1Q7Q_B 1Q85_B 1Q7Z_A 1Q7M_A 1Q8A_B ....
Probab=25.27 E-value=4.6e+02 Score=22.85 Aligned_cols=64 Identities=14% Similarity=0.179 Sum_probs=43.1
Q ss_pred HHHHHHHHH--cCccceEecCCCCHHHHHHHhccCCceEEeccccccccchhhhHHHHHHHhCCceeecccC
Q 018374 155 IGELKMLVV--EGKIKYIGLSEASPDTIRRAHAVHPITAVQMEWSLLTRDIEEEIIPLCRELGIGIVPYSPL 224 (357)
Q Consensus 155 ~~aL~~L~~--~G~ir~iGvS~~~~~~l~~~~~~~~~~~~q~~~n~~~~~~~~~~~~~~~~~gi~v~a~spl 224 (357)
...++.+++ .+. -+.+-++.++.++++++. ..+++-...+.- . ..++++.++++|..++++..-
T Consensus 60 ~~~l~~i~~~~~~~--plSIDT~~~~v~~~aL~~-g~~~ind~~~~~-~--~~~~~~l~a~~~~~vV~m~~~ 125 (210)
T PF00809_consen 60 VPVLQAIREENPDV--PLSIDTFNPEVAEAALKA-GADIINDISGFE-D--DPEMLPLAAEYGAPVVLMHSD 125 (210)
T ss_dssp HHHHHHHHHHHTTS--EEEEEESSHHHHHHHHHH-TSSEEEETTTTS-S--STTHHHHHHHHTSEEEEESES
T ss_pred HHHHHHHhccCCCe--EEEEECCCHHHHHHHHHc-CcceEEeccccc-c--cchhhhhhhcCCCEEEEEecc
Confidence 555666664 233 477788999999999887 445432222221 1 358999999999999987444
No 203
>PRK09249 coproporphyrinogen III oxidase; Provisional
Probab=25.22 E-value=2.2e+02 Score=28.15 Aligned_cols=28 Identities=29% Similarity=0.329 Sum_probs=21.1
Q ss_pred CCCHHHHHHHHHHHHhHhCCCcccEEEee
Q 018374 105 KGTPEYVRSCCEASLKRLGVDYIDLYYQH 133 (357)
Q Consensus 105 ~~~~~~i~~~v~~sL~~Lg~d~iDl~~lH 133 (357)
..+.+.+.+.++..+ .++.+++.+|.+-
T Consensus 214 gqt~e~~~~~l~~~~-~l~~~~i~~y~l~ 241 (453)
T PRK09249 214 KQTPESFARTLEKVL-ELRPDRLAVFNYA 241 (453)
T ss_pred CCCHHHHHHHHHHHH-hcCCCEEEEccCc
Confidence 347788888887766 4888999888764
No 204
>TIGR03217 4OH_2_O_val_ald 4-hydroxy-2-oxovalerate aldolase. Members of this protein family are 4-hydroxy-2-oxovalerate aldolase, also called 4-hydroxy-2-ketovalerate aldolase and 2-oxo-4-hydroxypentanoate aldolase. This enzyme, part of the pathway for the meta-cleavage of catechol, produces pyruvate and acetaldehyde. Acetaldehyde is then converted by acetaldehyde dehydrogenase (acylating) (DmpF; EC 1.2.1.10) to acetyl-CoA. The two enzymes are tightly associated.
Probab=25.18 E-value=4.6e+02 Score=24.85 Aligned_cols=106 Identities=22% Similarity=0.210 Sum_probs=57.3
Q ss_pred cCCCHHHHHHHHHHHHhHhCCCcccEEEeecCC-----CCCCccccccCCCChhHHHHHHHHHHHcCc-cceEecCC---
Q 018374 104 VKGTPEYVRSCCEASLKRLGVDYIDLYYQHRVD-----PSVPIEDTVCDSLPTSLNIGELKMLVVEGK-IKYIGLSE--- 174 (357)
Q Consensus 104 ~~~~~~~i~~~v~~sL~~Lg~d~iDl~~lH~pd-----~~~~~~~~~~~~~~~~~~~~aL~~L~~~G~-ir~iGvS~--- 174 (357)
+.++.+.+.+- -+.|.+.|+++|.+-..-... ...+.... ++.++++.+..+ .+...+..
T Consensus 19 ~~f~~~~~~~i-a~~Ld~aGV~~IEvg~g~gl~g~s~~~G~~~~~~----------~e~i~~~~~~~~~~~~~~ll~pg~ 87 (333)
T TIGR03217 19 HQFTIEQVRAI-AAALDEAGVDAIEVTHGDGLGGSSFNYGFSAHTD----------LEYIEAAADVVKRAKVAVLLLPGI 87 (333)
T ss_pred CcCCHHHHHHH-HHHHHHcCCCEEEEecCCCCCCccccCCCCCCCh----------HHHHHHHHHhCCCCEEEEEeccCc
Confidence 35666665554 455999999999986221110 00011111 555555544322 33332322
Q ss_pred CCHHHHHHHhccCCceEEeccccccccchhhhHHHHHHHhCCceeec
Q 018374 175 ASPDTIRRAHAVHPITAVQMEWSLLTRDIEEEIIPLCRELGIGIVPY 221 (357)
Q Consensus 175 ~~~~~l~~~~~~~~~~~~q~~~n~~~~~~~~~~~~~~~~~gi~v~a~ 221 (357)
.+.+.++.+.+. .++.+.+-.+.-.-+.-.+.+++++++|+.+...
T Consensus 88 ~~~~dl~~a~~~-gvd~iri~~~~~e~d~~~~~i~~ak~~G~~v~~~ 133 (333)
T TIGR03217 88 GTVHDLKAAYDA-GARTVRVATHCTEADVSEQHIGMARELGMDTVGF 133 (333)
T ss_pred cCHHHHHHHHHC-CCCEEEEEeccchHHHHHHHHHHHHHcCCeEEEE
Confidence 256677776654 4566655444333223367889999999877643
No 205
>COG3623 SgaU Putative L-xylulose-5-phosphate 3-epimerase [Carbohydrate transport and metabolism]
Probab=25.17 E-value=1.5e+02 Score=26.72 Aligned_cols=75 Identities=19% Similarity=0.340 Sum_probs=46.3
Q ss_pred CCCcccccceeccccccCCCCCC--CCHHHHHHHHHHHH----HcCCCeEeCcc--C-cCCCchHHHHHHHHh---cC--
Q 018374 16 TQGLEVSKLGFGCMGLTGMYNSP--VSEEDGISIIKHAF----NKGITFFDTAD--V-YGAHANEVLVGKVLK---QL-- 81 (357)
Q Consensus 16 ~tg~~vs~lglG~~~~g~~~~~~--~~~~~~~~~l~~A~----~~Gin~~DtA~--~-Yg~g~sE~~lG~al~---~~-- 81 (357)
.+|+.+|.+||.+.+=- .+|+. ..++++.++++.|+ +.||+.|--|. . |.. .+|+...+++. ..
T Consensus 65 etgv~ipSmClSaHRRf-PfGS~D~~~r~~aleiM~KaI~LA~dLGIRtIQLAGYDVYYE~-~d~eT~~rFi~g~~~a~~ 142 (287)
T COG3623 65 ETGVRIPSMCLSAHRRF-PFGSKDEATRQQALEIMEKAIQLAQDLGIRTIQLAGYDVYYEE-ADEETRQRFIEGLKWAVE 142 (287)
T ss_pred HhCCCccchhhhhhccC-CCCCCCHHHHHHHHHHHHHHHHHHHHhCceeEeeccceeeecc-CCHHHHHHHHHHHHHHHH
Confidence 58999999999987632 24443 23456666666655 67999998772 2 333 24444444443 32
Q ss_pred --CCCCeEEEeee
Q 018374 82 --PRKKIQLASKF 92 (357)
Q Consensus 82 --~R~~~~I~tK~ 92 (357)
.+-+|.++.-+
T Consensus 143 lA~~aqV~lAvEi 155 (287)
T COG3623 143 LAARAQVMLAVEI 155 (287)
T ss_pred HHHhhccEEEeee
Confidence 56777777665
No 206
>cd07939 DRE_TIM_NifV Streptomyces rubellomurinus FrbC and related proteins, catalytic TIM barrel domain. FrbC (NifV) of Streptomyces rubellomurinus catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate and CoA, a reaction similar to one catalyzed by homocitrate synthase. The gene encoding FrbC is one of several genes required for the biosynthesis of FR900098, a potent antimalarial antibiotic. This protein is also required for assembly of the nitrogenase MoFe complex but its exact role is unknown. This family also includes the NifV proteins of Heliobacterium chlorum and Gluconacetobacter diazotrophicus, which appear to be orthologous to FrbC. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarbox
Probab=25.04 E-value=5.1e+02 Score=23.30 Aligned_cols=24 Identities=17% Similarity=0.303 Sum_probs=21.9
Q ss_pred CCHHHHHHHHHHHHHcCCCeEeCc
Q 018374 39 VSEEDGISIIKHAFNKGITFFDTA 62 (357)
Q Consensus 39 ~~~~~~~~~l~~A~~~Gin~~DtA 62 (357)
.+.++..++++...+.||..|+++
T Consensus 17 ~~~~~k~~i~~~L~~~Gv~~iE~g 40 (259)
T cd07939 17 FSREEKLAIARALDEAGVDEIEVG 40 (259)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEe
Confidence 478999999999999999999997
No 207
>PRK13361 molybdenum cofactor biosynthesis protein A; Provisional
Probab=24.94 E-value=5.8e+02 Score=23.90 Aligned_cols=103 Identities=16% Similarity=0.171 Sum_probs=55.6
Q ss_pred CCHHHHHHHHHHHHHcCCCeEeCccCcCCCch------HHHHHHHHhcCC-CCCeEEEeeeeeccCCCcccccCCCHHHH
Q 018374 39 VSEEDGISIIKHAFNKGITFFDTADVYGAHAN------EVLVGKVLKQLP-RKKIQLASKFGVVSMAPTSVIVKGTPEYV 111 (357)
Q Consensus 39 ~~~~~~~~~l~~A~~~Gin~~DtA~~Yg~g~s------E~~lG~al~~~~-R~~~~I~tK~~~~~~~~~~~~~~~~~~~i 111 (357)
++.++..++++.+.+.|+..|--+ | |.. ++++.. +++.. ..++.|.|-.. .+
T Consensus 45 ls~eei~~li~~~~~~Gv~~I~~t---G-GEPllr~dl~~li~~-i~~~~~l~~i~itTNG~----------------ll 103 (329)
T PRK13361 45 LSLEELAWLAQAFTELGVRKIRLT---G-GEPLVRRGCDQLVAR-LGKLPGLEELSLTTNGS----------------RL 103 (329)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEEE---C-cCCCccccHHHHHHH-HHhCCCCceEEEEeChh----------------HH
Confidence 578899999999999999887632 3 221 222222 22211 12344444421 12
Q ss_pred HHHHHHHHhHhCCCcccEEEeecCCCCCCccccccCCCChhHHHHHHHHHHHcCc
Q 018374 112 RSCCEASLKRLGVDYIDLYYQHRVDPSVPIEDTVCDSLPTSLNIGELKMLVVEGK 166 (357)
Q Consensus 112 ~~~v~~sL~~Lg~d~iDl~~lH~pd~~~~~~~~~~~~~~~~~~~~aL~~L~~~G~ 166 (357)
.+ .-+.|...|++++- +.|+..++..... . ...-.+..+++.++.+++.|.
T Consensus 104 ~~-~~~~L~~aGl~~v~-ISlDs~~~e~~~~-i-~~~g~~~~vl~~i~~~~~~Gi 154 (329)
T PRK13361 104 AR-FAAELADAGLKRLN-ISLDTLRPELFAA-L-TRNGRLERVIAGIDAAKAAGF 154 (329)
T ss_pred HH-HHHHHHHcCCCeEE-EEeccCCHHHhhh-h-cCCCCHHHHHHHHHHHHHcCC
Confidence 22 33445566777665 3555554422111 1 112346677888888888774
No 208
>cd03329 MR_like_4 Mandelate racemase (MR)-like subfamily of the enolase superfamily, subgroup 4. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. This subgroup's function is unknown.
Probab=24.83 E-value=6.1e+02 Score=24.15 Aligned_cols=151 Identities=9% Similarity=0.014 Sum_probs=86.3
Q ss_pred CHHHHHHHHHHHHHcCCCeEeCccCcCCCchHHH--HHHHHhcCCCCCeEEEeeeeeccCCCcccccCCCHHHHHHHHHH
Q 018374 40 SEEDGISIIKHAFNKGITFFDTADVYGAHANEVL--VGKVLKQLPRKKIQLASKFGVVSMAPTSVIVKGTPEYVRSCCEA 117 (357)
Q Consensus 40 ~~~~~~~~l~~A~~~Gin~~DtA~~Yg~g~sE~~--lG~al~~~~R~~~~I~tK~~~~~~~~~~~~~~~~~~~i~~~v~~ 117 (357)
+.++..+.++.+.+.|++.|=.- .++...-++. .=+++|+.--+++.|..=. ++ .++.+...+- -+
T Consensus 143 ~~~~~~~~a~~~~~~Gf~~~Kik-~~~~~~~~~di~~i~~vR~~~G~~~~l~vDa----n~------~~~~~~A~~~-~~ 210 (368)
T cd03329 143 SPEAYADFAEECKALGYRAIKLH-PWGPGVVRRDLKACLAVREAVGPDMRLMHDG----AH------WYSRADALRL-GR 210 (368)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEe-cCCchhHHHHHHHHHHHHHHhCCCCeEEEEC----CC------CcCHHHHHHH-HH
Confidence 55677788888999999998652 1221101111 1133444222233332211 11 2344433322 22
Q ss_pred HHhHhCCCcccEEEeecCCCCCCccccccCCCChhHHHHHHHHHHHcCccceEec--CCCC-HHHHHHHhccCCceEEec
Q 018374 118 SLKRLGVDYIDLYYQHRVDPSVPIEDTVCDSLPTSLNIGELKMLVVEGKIKYIGL--SEAS-PDTIRRAHAVHPITAVQM 194 (357)
Q Consensus 118 sL~~Lg~d~iDl~~lH~pd~~~~~~~~~~~~~~~~~~~~aL~~L~~~G~ir~iGv--S~~~-~~~l~~~~~~~~~~~~q~ 194 (357)
.|+.+ ++.++..|-+.. . ++.+.+|+++-.+. |.. +-++ ...++.+++...++++|+
T Consensus 211 ~l~~~-----~l~~iEeP~~~~----d----------~~~~~~l~~~~~ip-Ia~~E~~~~~~~~~~~~i~~~a~d~v~~ 270 (368)
T cd03329 211 ALEEL-----GFFWYEDPLREA----S----------ISSYRWLAEKLDIP-ILGTEHSRGALESRADWVLAGATDFLRA 270 (368)
T ss_pred Hhhhc-----CCCeEeCCCCch----h----------HHHHHHHHhcCCCC-EEccCcccCcHHHHHHHHHhCCCCEEec
Confidence 33443 444555543221 2 67778888876655 433 3356 888999999888899999
Q ss_pred ccccccc-chhhhHHHHHHHhCCceeecc
Q 018374 195 EWSLLTR-DIEEEIIPLCRELGIGIVPYS 222 (357)
Q Consensus 195 ~~n~~~~-~~~~~~~~~~~~~gi~v~a~s 222 (357)
..+..-- ....++...|+++|+.++.++
T Consensus 271 d~~~~GGit~~~~ia~~a~~~gi~~~~h~ 299 (368)
T cd03329 271 DVNLVGGITGAMKTAHLAEAFGLDVELHG 299 (368)
T ss_pred CccccCCHHHHHHHHHHHHHcCCEEEEEC
Confidence 7766432 223689999999999997654
No 209
>TIGR01228 hutU urocanate hydratase. This model represents the second of four enzymes involved in the degradation of histidine to glutamate.
Probab=24.77 E-value=1.2e+02 Score=30.33 Aligned_cols=117 Identities=18% Similarity=0.212 Sum_probs=76.7
Q ss_pred HHHHHHHHHcCCCeEe--CccCcC--------CCchHHHHHHHHhcC----CCCCeEEEeeeeeccCCCcc---------
Q 018374 45 ISIIKHAFNKGITFFD--TADVYG--------AHANEVLVGKVLKQL----PRKKIQLASKFGVVSMAPTS--------- 101 (357)
Q Consensus 45 ~~~l~~A~~~Gin~~D--tA~~Yg--------~g~sE~~lG~al~~~----~R~~~~I~tK~~~~~~~~~~--------- 101 (357)
-+-+....+.|+..+= ||..|- +|.-|.++ .+-++. .+-+++|+.=+|......+.
T Consensus 106 ~e~f~~l~~~Gl~mYGQMTAGsw~YIG~QGIvqGTyeT~~-~aark~f~~~L~G~~~lTaGLGGMgGAQPlA~~mag~v~ 184 (545)
T TIGR01228 106 WEHFHELEAKGLMMYGQMTAGSWIYIGTQGILQGTYETFA-ELARQHFGGSLKGKWVLTAGLGGMGGAQPLAVTMNGGVS 184 (545)
T ss_pred HHHHHHHHHcccccccCccccceEEEcCcceeecHHHHHH-HHHHHhcCCCCceeEEEEeCCCccccccHHHHHHcCceE
Confidence 3445666778887663 554442 14445444 444432 46678888887765544320
Q ss_pred cccCCCHHHHHHHHHHHHhHhCCCcccEEEeecCCCCCCccccccCCCChhHHHHHHHHHHHcCccceEecCCCCHHHHH
Q 018374 102 VIVKGTPEYVRSCCEASLKRLGVDYIDLYYQHRVDPSVPIEDTVCDSLPTSLNIGELKMLVVEGKIKYIGLSEASPDTIR 181 (357)
Q Consensus 102 ~~~~~~~~~i~~~v~~sL~~Lg~d~iDl~~lH~pd~~~~~~~~~~~~~~~~~~~~aL~~L~~~G~ir~iGvS~~~~~~l~ 181 (357)
...+.++..|++ |+.+.|+|.+- ..+++. ++..++.+++|+..+||+-.--.+.++
T Consensus 185 i~vEvd~~ri~k-------R~~~gyld~~~-------~~ldea----------l~~~~~a~~~~~~~SIg~~GNaadv~~ 240 (545)
T TIGR01228 185 IAVEVDESRIDK-------RLETKYCDEQT-------DSLDEA----------LARAEEAKAEGKPISIGLLGNAAEVLP 240 (545)
T ss_pred EEEEECHHHHHH-------HHhcCcceeEc-------CCHHHH----------HHHHHHHHHcCCceEEEeeccHHHHHH
Confidence 123455555554 66678887653 334555 999999999999999999998888889
Q ss_pred HHhcc
Q 018374 182 RAHAV 186 (357)
Q Consensus 182 ~~~~~ 186 (357)
++++.
T Consensus 241 ~l~~r 245 (545)
T TIGR01228 241 ELLKR 245 (545)
T ss_pred HHHHc
Confidence 88875
No 210
>COG2200 Rtn c-di-GMP phosphodiesterase class I (EAL domain) [Signal transduction mechanisms]
Probab=24.69 E-value=5.2e+02 Score=23.25 Aligned_cols=131 Identities=19% Similarity=0.215 Sum_probs=73.5
Q ss_pred HHHHHHHHhcC--CCC--CeEEEeeeeeccCCCcccccCCCHHHHHHHHHHHHhHhCCCcccEEEeecCCCCCCcccccc
Q 018374 71 EVLVGKVLKQL--PRK--KIQLASKFGVVSMAPTSVIVKGTPEYVRSCCEASLKRLGVDYIDLYYQHRVDPSVPIEDTVC 146 (357)
Q Consensus 71 E~~lG~al~~~--~R~--~~~I~tK~~~~~~~~~~~~~~~~~~~i~~~v~~sL~~Lg~d~iDl~~lH~pd~~~~~~~~~~ 146 (357)
..++.++++.. .+. .+.++..+... .+....+...+.+.+++.+++.- -+.+.= .+......
T Consensus 69 ~~v~~~a~~~~~~~~~~~~~~l~iNis~~---------~l~~~~~~~~l~~~l~~~~~~~~-~l~lEi-tE~~~~~~--- 134 (256)
T COG2200 69 RWVLEEACRQLRTWPRAGPLRLAVNLSPV---------QLRSPGLVDLLLRLLARLGLPPH-RLVLEI-TESALIDD--- 134 (256)
T ss_pred HHHHHHHHHHHHhhhhcCCceEEEEcCHH---------HhCCchHHHHHHHHHHHhCCCcc-eEEEEE-eCchhhcC---
Confidence 56666666654 122 36777776543 22335566678888888876543 222211 11111111
Q ss_pred CCCChhHHHHHHHHHHHcCccceEecCCCC--HHHHHHHhccCCceEEecccccccc--------chhhhHHHHHHHhCC
Q 018374 147 DSLPTSLNIGELKMLVVEGKIKYIGLSEAS--PDTIRRAHAVHPITAVQMEWSLLTR--------DIEEEIIPLCRELGI 216 (357)
Q Consensus 147 ~~~~~~~~~~aL~~L~~~G~ir~iGvS~~~--~~~l~~~~~~~~~~~~q~~~n~~~~--------~~~~~~~~~~~~~gi 216 (357)
...+...++.|++.|- .|.+.+|. -.-+..+.. .+++.+=+.-+.... ..-..++..|++.|+
T Consensus 135 ----~~~~~~~l~~L~~~G~--~ialDDFGtG~ssl~~L~~-l~~d~iKID~~fi~~i~~~~~~~~iv~~iv~la~~l~~ 207 (256)
T COG2200 135 ----LDTALALLRQLRELGV--RIALDDFGTGYSSLSYLKR-LPPDILKIDRSFVRDLETDARDQAIVRAIVALAHKLGL 207 (256)
T ss_pred ----HHHHHHHHHHHHHCCC--eEEEECCCCCHHHHHHHhh-CCCCeEEECHHHHhhcccCcchHHHHHHHHHHHHHCCC
Confidence 1234789999999993 47776662 233433333 455555443333331 122678999999999
Q ss_pred ceeecc
Q 018374 217 GIVPYS 222 (357)
Q Consensus 217 ~v~a~s 222 (357)
.+++-.
T Consensus 208 ~vvaEG 213 (256)
T COG2200 208 TVVAEG 213 (256)
T ss_pred EEEEee
Confidence 999853
No 211
>TIGR02026 BchE magnesium-protoporphyrin IX monomethyl ester anaerobic oxidative cyclase. This model respresents the cobalamin-dependent oxidative cyclase responsible for forming the distinctive E-ring of the chlorin ring system under anaerobic conditions. This step is essential in the biosynthesis of both bacteriochlorophyll and chlorophyll under anaerobic conditions (a separate enzyme, AcsF, acts under aerobic conditions). This model identifies two clades of sequences, one from photosynthetic, non-cyanobacterial bacteria and another including Synechocystis and several non-photosynthetic bacteria. The function of the Synechocystis gene is supported by gene clustering with other photosynthetic genes, so the purpose of the gene in the non-photosynthetic bacteria is uncertain. Note that homologs of this gene are not found in plants which rely solely on the aerobic cyclase.
Probab=24.62 E-value=5.9e+02 Score=25.54 Aligned_cols=102 Identities=12% Similarity=0.112 Sum_probs=53.8
Q ss_pred CCHHHHHHHHHHHHhHhCCCcccEEEeecCCCCCCccccccCCCChhHHHHHHHHHHHcC-ccceEecCC----C--CHH
Q 018374 106 GTPEYVRSCCEASLKRLGVDYIDLYYQHRVDPSVPIEDTVCDSLPTSLNIGELKMLVVEG-KIKYIGLSE----A--SPD 178 (357)
Q Consensus 106 ~~~~~i~~~v~~sL~~Lg~d~iDl~~lH~pd~~~~~~~~~~~~~~~~~~~~aL~~L~~~G-~ir~iGvS~----~--~~~ 178 (357)
.+++.+.+.++...++.|+..+ .+...++....+.. .+-+++|++.| .--.+++++ . +.+
T Consensus 222 rs~e~Vv~Ei~~l~~~~gv~~~---~~~Dd~f~~~~~~~----------~~l~~~l~~~~~l~i~w~~~~r~~~i~~d~e 288 (497)
T TIGR02026 222 RDPKKFVDEIEWLVRTHGVGFF---ILADEEPTINRKKF----------QEFCEEIIARNPISVTWGINTRVTDIVRDAD 288 (497)
T ss_pred CCHHHHHHHHHHHHHHcCCCEE---EEEecccccCHHHH----------HHHHHHHHhcCCCCeEEEEecccccccCCHH
Confidence 5789999999998888886543 33333322222222 56667777776 322344332 1 333
Q ss_pred HHHHHhccCCceEEecccccccc--------c----hhhhHHHHHHHhCCceeec
Q 018374 179 TIRRAHAVHPITAVQMEWSLLTR--------D----IEEEIIPLCRELGIGIVPY 221 (357)
Q Consensus 179 ~l~~~~~~~~~~~~q~~~n~~~~--------~----~~~~~~~~~~~~gi~v~a~ 221 (357)
.++ ++....+..+++-.--.++ . ...+.+..|+++||.+.+.
T Consensus 289 ll~-~l~~aG~~~v~iGiES~~~~~L~~~~K~~t~~~~~~ai~~l~~~Gi~~~~~ 342 (497)
T TIGR02026 289 ILH-LYRRAGLVHISLGTEAAAQATLDHFRKGTTTSTNKEAIRLLRQHNILSEAQ 342 (497)
T ss_pred HHH-HHHHhCCcEEEEccccCCHHHHHHhcCCCCHHHHHHHHHHHHHCCCcEEEE
Confidence 343 3333333333332222111 1 1146788999999987553
No 212
>PRK06424 transcription factor; Provisional
Probab=24.61 E-value=1.7e+02 Score=24.11 Aligned_cols=81 Identities=12% Similarity=0.072 Sum_probs=41.5
Q ss_pred hhhHHHHHHHhCCceeec---ccCccc--cCCCCCc--CCCCCCCcccccCCCCCCCcchhhHHHHHHHHHHHHhcCCCh
Q 018374 204 EEEIIPLCRELGIGIVPY---SPLGRG--LLGGKAV--VESLPANSFLISHPRFTGENLGKNKQIYARVENLAKRNKCTP 276 (357)
Q Consensus 204 ~~~~~~~~~~~gi~v~a~---spl~~G--~L~g~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ia~~~g~s~ 276 (357)
+..+-+-|.+.|..|..+ +|...- .-..... .........+...+.| ....+........|+.+.++.|+|.
T Consensus 22 ~l~vC~~Ca~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~-~~~~~~~~~~g~~Ir~lRe~~GLSQ 100 (144)
T PRK06424 22 ILNVCDDCAKFGTPVIEHNKFKEVKEDIKVKLPEKKIIVPTYKKAYKKYKKKAS-DEDLDIVEDYAELVKNARERLSMSQ 100 (144)
T ss_pred eeehhHHHHHcCCcccccCCCCcccccccccCccccccccccccCCCCccCccc-HHHHHHHHHHHHHHHHHHHHcCCCH
Confidence 356788999999999988 555421 1100000 0000000000000111 1111223445567888888899999
Q ss_pred HHHHHHHHH
Q 018374 277 AQLSLAWLL 285 (357)
Q Consensus 277 ~q~al~~~l 285 (357)
.++|-+--+
T Consensus 101 ~eLA~~iGv 109 (144)
T PRK06424 101 ADLAAKIFE 109 (144)
T ss_pred HHHHHHhCC
Confidence 998865443
No 213
>cd03326 MR_like_1 Mandelate racemase (MR)-like subfamily of the enolase superfamily, subgroup 1. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. This subgroup's function is unknown.
Probab=24.50 E-value=6.5e+02 Score=24.33 Aligned_cols=146 Identities=11% Similarity=-0.026 Sum_probs=84.0
Q ss_pred CHHHHHHHHHHHHHcCCCeEeCccCcCCCc-h--HHHHHHHHhcCCCCCeEEEeeeeeccCCCcccccCCCHHHHHHHHH
Q 018374 40 SEEDGISIIKHAFNKGITFFDTADVYGAHA-N--EVLVGKVLKQLPRKKIQLASKFGVVSMAPTSVIVKGTPEYVRSCCE 116 (357)
Q Consensus 40 ~~~~~~~~l~~A~~~Gin~~DtA~~Yg~g~-s--E~~lG~al~~~~R~~~~I~tK~~~~~~~~~~~~~~~~~~~i~~~v~ 116 (357)
+.++..+.+..+++.|++.|=.-- |... . .+.+ +++++.--+++.|..=.. . .++.+...+
T Consensus 160 ~~~~~~~~a~~~~~~Gf~~~Kikv--g~~~~~~di~~v-~avRe~~G~~~~l~vDaN----~------~w~~~~A~~--- 223 (385)
T cd03326 160 DLGRLRDEMRRYLDRGYTVVKIKI--GGAPLDEDLRRI-EAALDVLGDGARLAVDAN----G------RFDLETAIA--- 223 (385)
T ss_pred CHHHHHHHHHHHHHCCCCEEEEeC--CCCCHHHHHHHH-HHHHHhcCCCCeEEEECC----C------CCCHHHHHH---
Confidence 455666777778899999875321 1101 1 1222 334432112332322111 0 234443222
Q ss_pred HHHhHhCCCcccEEEeecCCCCCCccccccCCCChhHHHHHHHHHHHcCccc-eEecCCCCHHHHHHHhccCCc----eE
Q 018374 117 ASLKRLGVDYIDLYYQHRVDPSVPIEDTVCDSLPTSLNIGELKMLVVEGKIK-YIGLSEASPDTIRRAHAVHPI----TA 191 (357)
Q Consensus 117 ~sL~~Lg~d~iDl~~lH~pd~~~~~~~~~~~~~~~~~~~~aL~~L~~~G~ir-~iGvS~~~~~~l~~~~~~~~~----~~ 191 (357)
.++.| +.+++.++..|-+. +. ++.+.+|+++..+- +.|=|-++...+..+++..-. ++
T Consensus 224 -~~~~l--~~~~~~~iEeP~~~----~d----------~~~~~~L~~~~~iPIa~gEs~~~~~~~~~li~~~a~~~~~di 286 (385)
T cd03326 224 -YAKAL--APYGLRWYEEPGDP----LD----------YALQAELADHYDGPIATGENLFSLQDARNLLRYGGMRPDRDV 286 (385)
T ss_pred -HHHHh--hCcCCCEEECCCCc----cC----------HHHHHHHHhhCCCCEEcCCCcCCHHHHHHHHHhCCccccCCE
Confidence 22333 22466667766432 22 78888898887655 455566899999999887655 88
Q ss_pred Eecccccccc-chhhhHHHHHHHhCCce
Q 018374 192 VQMEWSLLTR-DIEEEIIPLCRELGIGI 218 (357)
Q Consensus 192 ~q~~~n~~~~-~~~~~~~~~~~~~gi~v 218 (357)
+|+...-.-- ....++.+.|+.+|+.+
T Consensus 287 v~~d~~~~GGit~~~kia~lA~a~gi~~ 314 (385)
T cd03326 287 LQFDPGLSYGLPEYLRMLDVLEAHGWSR 314 (385)
T ss_pred EEeCchhhCCHHHHHHHHHHHHHcCCCC
Confidence 9887654321 12368999999999985
No 214
>cd01821 Rhamnogalacturan_acetylesterase_like Rhamnogalacturan_acetylesterase_like subgroup of SGNH-hydrolases. Rhamnogalacturan acetylesterase removes acetyl esters from rhamnogalacturonan substrates, and renders them susceptible to degradation by rhamnogalacturonases. Rhamnogalacturonans are highly branched regions in pectic polysaccharides, consisting of repeating -(1,2)-L-Rha-(1,4)-D-GalUA disaccharide units, with many rhamnose residues substituted by neutral oligosaccharides such as arabinans, galactans and arabinogalactans. Extracellular enzymes participating in the degradation of plant cell wall polymers, such as Rhamnogalacturonan acetylesterase, would typically be found in saprophytic and plant pathogenic fungi and bacteria.
Probab=24.45 E-value=4.1e+02 Score=22.39 Aligned_cols=94 Identities=12% Similarity=0.065 Sum_probs=52.5
Q ss_pred ccceEecCCCCHHHH------HHHhcc---CCceEEeccccccccc-------hh------hhHHHHHHHhCCceeeccc
Q 018374 166 KIKYIGLSEASPDTI------RRAHAV---HPITAVQMEWSLLTRD-------IE------EEIIPLCRELGIGIVPYSP 223 (357)
Q Consensus 166 ~ir~iGvS~~~~~~l------~~~~~~---~~~~~~q~~~n~~~~~-------~~------~~~~~~~~~~gi~v~a~sp 223 (357)
.|...|+++.+...+ ...+.. ..+.++++-.|=.... .+ ..+++.++++|..++-.+|
T Consensus 36 ~v~N~gi~G~ts~~~~~~~~~~~~l~~~~~pdlVii~~G~ND~~~~~~~~~~~~~~~~~nl~~ii~~~~~~~~~~il~tp 115 (198)
T cd01821 36 TVVNHAKGGRSSRSFRDEGRWDAILKLIKPGDYVLIQFGHNDQKPKDPEYTEPYTTYKEYLRRYIAEARAKGATPILVTP 115 (198)
T ss_pred EEEeCCCCCccHHHHHhCCcHHHHHhhCCCCCEEEEECCCCCCCCCCCCCCCcHHHHHHHHHHHHHHHHHCCCeEEEECC
Confidence 666778888766543 234332 2334444433332221 11 4788888999999888777
Q ss_pred CccccCCCCCcCCCCCCCcccccCCCCCCCcchhhHHHHHHHHHHHHhcCCChHH
Q 018374 224 LGRGLLGGKAVVESLPANSFLISHPRFTGENLGKNKQIYARVENLAKRNKCTPAQ 278 (357)
Q Consensus 224 l~~G~L~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ia~~~g~s~~q 278 (357)
....-+... ....+......+.++++|+++|+....
T Consensus 116 ~~~~~~~~~-------------------~~~~~~~~~~~~~~~~~a~~~~~~~vD 151 (198)
T cd01821 116 VTRRTFDEG-------------------GKVEDTLGDYPAAMRELAAEEGVPLID 151 (198)
T ss_pred ccccccCCC-------------------CcccccchhHHHHHHHHHHHhCCCEEe
Confidence 542110000 001122345667899999999987543
No 215
>cd00945 Aldolase_Class_I Class I aldolases. The class I aldolases use an active-site lysine which stablilzes a reaction intermediates via Schiff base formation, and have TIM beta/alpha barrel fold. The members of this family include 2-keto-3-deoxy-6-phosphogluconate (KDPG) and 2-keto-4-hydroxyglutarate (KHG) aldolases, transaldolase, dihydrodipicolinate synthase sub-family, Type I 3-dehydroquinate dehydratase, DeoC and DhnA proteins, and metal-independent fructose-1,6-bisphosphate aldolase. Although structurally similar, the class II aldolases use a different mechanism and are believed to have an independent evolutionary origin.
Probab=24.32 E-value=4.2e+02 Score=22.06 Aligned_cols=76 Identities=16% Similarity=0.049 Sum_probs=46.0
Q ss_pred CHHHHHHHHHHHHHcCCCeEeCccCcCCCchHHHHHHHHhcCCCC-CeEEEeeeeeccCCCcccccCCCHHHHHHHHHHH
Q 018374 40 SEEDGISIIKHAFNKGITFFDTADVYGAHANEVLVGKVLKQLPRK-KIQLASKFGVVSMAPTSVIVKGTPEYVRSCCEAS 118 (357)
Q Consensus 40 ~~~~~~~~l~~A~~~Gin~~DtA~~Yg~g~sE~~lG~al~~~~R~-~~~I~tK~~~~~~~~~~~~~~~~~~~i~~~v~~s 118 (357)
+.+...++++.+++.|++-+-+.. .++-.+.+. .++ ++-|..+++..... ...+...+.+++.
T Consensus 11 d~~~~~~~~~~~~~~gv~gi~~~g--------~~i~~~~~~-~~~~~~~v~~~v~~~~~~-------~~~~~~~~~a~~a 74 (201)
T cd00945 11 TLEDIAKLCDEAIEYGFAAVCVNP--------GYVRLAADA-LAGSDVPVIVVVGFPTGL-------TTTEVKVAEVEEA 74 (201)
T ss_pred CHHHHHHHHHHHHHhCCcEEEECH--------HHHHHHHHH-hCCCCCeEEEEecCCCCC-------CcHHHHHHHHHHH
Confidence 678899999999999999887553 334333333 334 67777787754211 1244555555555
Q ss_pred HhHhCCCcccEEEeecC
Q 018374 119 LKRLGVDYIDLYYQHRV 135 (357)
Q Consensus 119 L~~Lg~d~iDl~~lH~p 135 (357)
. ++|. |.++++-|
T Consensus 75 ~-~~Ga---d~i~v~~~ 87 (201)
T cd00945 75 I-DLGA---DEIDVVIN 87 (201)
T ss_pred H-HcCC---CEEEEecc
Confidence 3 4475 45555433
No 216
>COG1104 NifS Cysteine sulfinate desulfinase/cysteine desulfurase and related enzymes [Amino acid transport and metabolism]
Probab=24.16 E-value=2.9e+02 Score=26.84 Aligned_cols=75 Identities=16% Similarity=0.224 Sum_probs=46.4
Q ss_pred HHHHHHHHHcC-ccceEecCCC---CHHHHHHHhccCC-ceEEecccccc-ccchhhhHHHHHHHhCCceeecccCcccc
Q 018374 155 IGELKMLVVEG-KIKYIGLSEA---SPDTIRRAHAVHP-ITAVQMEWSLL-TRDIEEEIIPLCRELGIGIVPYSPLGRGL 228 (357)
Q Consensus 155 ~~aL~~L~~~G-~ir~iGvS~~---~~~~l~~~~~~~~-~~~~q~~~n~~-~~~~~~~~~~~~~~~gi~v~a~spl~~G~ 228 (357)
++.++.|..+| .|.++.|... +.++|++++...- ..++|.--|-. .-++-.++-+.|+++|+-+..-.+-+-|.
T Consensus 105 l~~~~~Le~~g~~Vtyl~V~~~G~v~~e~L~~al~~~T~LVSim~aNnE~G~IQpI~ei~~i~k~~~i~fHvDAvQa~Gk 184 (386)
T COG1104 105 LNTCRYLERQGFEVTYLPVDSNGLVDLEQLEEALRPDTILVSIMHANNETGTIQPIAEIGEICKERGILFHVDAVQAVGK 184 (386)
T ss_pred HHHHHHHHhcCCeEEEeCCCCCCeEcHHHHHHhcCCCceEEEEEecccCeeecccHHHHHHHHHHcCCeEEEehhhhcCc
Confidence 77778887778 8889988763 7888888886432 22222211111 11223688899999987766554444444
Q ss_pred C
Q 018374 229 L 229 (357)
Q Consensus 229 L 229 (357)
+
T Consensus 185 i 185 (386)
T COG1104 185 I 185 (386)
T ss_pred e
Confidence 3
No 217
>PF08734 GYD: GYD domain; InterPro: IPR014845 These proteins of unknown function are usually less than 100 amino acids in length. They may belong to the dimeric alpha/beta barrel superfamily.
Probab=23.99 E-value=3e+02 Score=20.50 Aligned_cols=72 Identities=10% Similarity=0.061 Sum_probs=49.9
Q ss_pred HHHHHHHHHHHhHhCCCcccEEEeecCCCCCCccccccCCCChhHHHHHHHHHHHcCccceEecCCCCHHHHHHHh
Q 018374 109 EYVRSCCEASLKRLGVDYIDLYYQHRVDPSVPIEDTVCDSLPTSLNIGELKMLVVEGKIKYIGLSEASPDTIRRAH 184 (357)
Q Consensus 109 ~~i~~~v~~sL~~Lg~d~iDl~~lH~pd~~~~~~~~~~~~~~~~~~~~aL~~L~~~G~ir~iGvS~~~~~~l~~~~ 184 (357)
..-.+.+++.++.+|..-.++|+.-.+-. -+. ..+.++...+.+..-.+...|.++.-=+--++.+++.+++
T Consensus 19 ~~R~~a~~~~~e~~Gg~l~~~y~t~G~yD--~v~--i~eaPD~~~a~~~~l~i~~~G~v~~et~~a~~~~e~~~~~ 90 (91)
T PF08734_consen 19 PDRAEAVRALIEALGGKLKSFYWTLGEYD--FVV--IVEAPDDETAAAASLAIRSSGNVRTETLRAFPWDEFDEIV 90 (91)
T ss_pred HHHHHHHHHHHHHcCCEEEEEEEecCCCC--EEE--EEEcCCHHHHHHHHHHHHcCCceEEEEEecCCHHHHHHHh
Confidence 45577788899999999999988855411 110 1122334445778888899999998666668888887765
No 218
>PRK07328 histidinol-phosphatase; Provisional
Probab=23.95 E-value=5.4e+02 Score=23.24 Aligned_cols=117 Identities=13% Similarity=0.062 Sum_probs=59.2
Q ss_pred HHHHHHHHHHHcCCCeEeCccCcCC------------CchHHHHHHHHhcC-------CCCCeEEEeeeeeccCCCcccc
Q 018374 43 DGISIIKHAFNKGITFFDTADVYGA------------HANEVLVGKVLKQL-------PRKKIQLASKFGVVSMAPTSVI 103 (357)
Q Consensus 43 ~~~~~l~~A~~~Gin~~DtA~~Yg~------------g~sE~~lG~al~~~-------~R~~~~I~tK~~~~~~~~~~~~ 103 (357)
...+++++|.+.|+..+=-++|... +.+..-+-..+++. .+=+|.+..-++..
T Consensus 19 ~~ee~v~~A~~~Gl~~i~~TdH~~~~~~~~~~~~~~~~~~~~~~~~y~~~i~~l~~~y~~i~Il~GiE~~~~-------- 90 (269)
T PRK07328 19 TPEEYVQAARRAGLKEIGFTDHLPMYFLPPEWRDPGLAMRLEELPFYVSEVERLRARFPDLYVRLGIEADYH-------- 90 (269)
T ss_pred CHHHHHHHHHHCCCCEEEEecCCCCCCcCcccccccccccHHHHHHHHHHHHHHHHHcCCCeEEEEEEeccc--------
Confidence 4789999999999998755544221 11212222333222 11123333333322
Q ss_pred cCCCHHHHHHHHHHHHhHhCCCcccEEEeecCCCC-CCcccc--ccCCCChhHHHH----HHHHHHHcCccceEecC
Q 018374 104 VKGTPEYVRSCCEASLKRLGVDYIDLYYQHRVDPS-VPIEDT--VCDSLPTSLNIG----ELKMLVVEGKIKYIGLS 173 (357)
Q Consensus 104 ~~~~~~~i~~~v~~sL~~Lg~d~iDl~~lH~pd~~-~~~~~~--~~~~~~~~~~~~----aL~~L~~~G~ir~iGvS 173 (357)
+ .....+++.|++-..||+ +..+|+.+.. ....+. .|........++ .+.++.+.|.+.-+|=-
T Consensus 91 ----~-~~~~~~~~~l~~~~~D~v-igSvH~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~~~~~~~~~~dvlgH~ 161 (269)
T PRK07328 91 ----P-GTEEFLERLLEAYPFDYV-IGSVHYLGAWGFDNPDFVAEYEERDLDELYRRYFALVEQAARSGLFDIIGHP 161 (269)
T ss_pred ----C-CcHHHHHHHHHhCCCCeE-EEEEeecCCcCCCChhHHHHHhcCCHHHHHHHHHHHHHHHHHcCCCCEeeCc
Confidence 1 234555666777666777 7788986421 000100 011122223333 46777788887766644
No 219
>COG0761 lytB 4-Hydroxy-3-methylbut-2-enyl diphosphate reductase IspH [Lipid metabolism]
Probab=23.80 E-value=4.1e+02 Score=24.67 Aligned_cols=119 Identities=17% Similarity=0.220 Sum_probs=71.9
Q ss_pred HHHHHHHHH--HcCccceEecCCCCHHHHHHHhc----cCCc--eEEeccccccccchhhhHHHHHHHhCCceeecccCc
Q 018374 154 NIGELKMLV--VEGKIKYIGLSEASPDTIRRAHA----VHPI--TAVQMEWSLLTRDIEEEIIPLCRELGIGIVPYSPLG 225 (357)
Q Consensus 154 ~~~aL~~L~--~~G~ir~iGvS~~~~~~l~~~~~----~~~~--~~~q~~~n~~~~~~~~~~~~~~~~~gi~v~a~spl~ 225 (357)
..+.+..|. ..-++-++--.+.+.+...+.++ ..|. ...-......+++.+..+.+++.+.++-++.-++-+
T Consensus 145 ~~~d~~~l~~~~~~~l~~~tQTTls~ddt~~Iv~~l~~r~p~~~~~~~~~ICyAT~nRQ~Avk~la~~~Dl~iVVG~~nS 224 (294)
T COG0761 145 SVEDVANLKVQLPDKLAFVTQTTLSVDDTAEIVAALKERFPKIEVPPFNDICYATQNRQDAVKELAPEVDLVIVVGSKNS 224 (294)
T ss_pred cHHHHHhcccCCcccEEEEeeeecCHHHHHHHHHHHHHhCccccCCcccccchhhhhHHHHHHHHhhcCCEEEEECCCCC
Confidence 355555554 22244444444455554444333 2331 111111223334445678888888888877765554
Q ss_pred cccCCCCCcCCCCCCCcccccCCCCCCCcchhhHHHHHHHHHHHHhcCC------ChHHHHHHHHHhCCCCeEEecCCCC
Q 018374 226 RGLLGGKAVVESLPANSFLISHPRFTGENLGKNKQIYARVENLAKRNKC------TPAQLSLAWLLRQGDDIVPIPGTTK 299 (357)
Q Consensus 226 ~G~L~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ia~~~g~------s~~q~al~~~l~~~~v~~~ivG~~~ 299 (357)
+. -.+|.++|+++|. ++.++=..|+.... .+.+-.|+|.
T Consensus 225 SN----------------------------------s~rL~eiA~~~g~~aylId~~~ei~~~w~~~~~-~VGvTAGASt 269 (294)
T COG0761 225 SN----------------------------------SNRLAEIAKRHGKPAYLIDDAEEIDPEWLKGVK-TVGVTAGAST 269 (294)
T ss_pred cc----------------------------------HHHHHHHHHHhCCCeEEeCChHhCCHHHhcCcc-EEEEecCCCC
Confidence 31 1479999999886 57888889998744 4678889999
Q ss_pred HHHHHHHH
Q 018374 300 IKNLDENI 307 (357)
Q Consensus 300 ~~~l~enl 307 (357)
|+-|-+++
T Consensus 270 Pd~lV~~V 277 (294)
T COG0761 270 PDWLVQEV 277 (294)
T ss_pred CHHHHHHH
Confidence 99887764
No 220
>cd00248 Mth938-like Mth938-like domain. The members of this family include: Mth938, 2P1, Xcr35, Rpa2829, and several uncharacterized sequences. Mth938 is a hypothetical protein encoded by the Methanobacterium thermoautotrophicum (Mth) genome. This protein crystallizes as a dimer, although it is monomeric in solution, with one disulfide bond in each monomer. 2P1 is a partially characterized nuclear protein which is homologous to E3-3 from rat and known to be alternately spliced. Xcr35 and Rpa2829 are hypothetical proteins of unknown function from the Xanthomonas campestris and Rhodopseudomonas palustris genomes, respectively, for which the crystal structures have been determined.
Probab=23.70 E-value=2.1e+02 Score=22.21 Aligned_cols=53 Identities=17% Similarity=0.127 Sum_probs=32.1
Q ss_pred cCCCCHHHHHHHhccCCceEEeccccccccchhhhHHHHHHHhCCceeecccC
Q 018374 172 LSEASPDTIRRAHAVHPITAVQMEWSLLTRDIEEEIIPLCRELGIGIVPYSPL 224 (357)
Q Consensus 172 vS~~~~~~l~~~~~~~~~~~~q~~~n~~~~~~~~~~~~~~~~~gi~v~a~spl 224 (357)
.+..+.+.+..++...+++++-+--..-.+....++.++++++||++..+..-
T Consensus 36 ~~~l~~~~l~~~~~~~~peiliiGTG~~~~~~~~~~~~~l~~~gI~vE~m~T~ 88 (109)
T cd00248 36 LSDLDPEALLPLLAEDRPDILLIGTGAEIAFLPRALRAALRAAGIGVEVMSTG 88 (109)
T ss_pred cccCCHHHHHHHHhhCCCCEEEEcCCCCCCcCCHHHHHHHHHcCCeEEEeCcH
Confidence 34456666766665443455544333322233467889999999999887443
No 221
>KOG2018 consensus Predicted dinucleotide-utilizing enzyme involved in molybdopterin and thiamine biosynthesis [Posttranslational modification, protein turnover, chaperones]
Probab=23.66 E-value=6.2e+02 Score=24.06 Aligned_cols=17 Identities=12% Similarity=0.542 Sum_probs=15.6
Q ss_pred hhHHHHHHHhCCceeec
Q 018374 205 EEIIPLCRELGIGIVPY 221 (357)
Q Consensus 205 ~~~~~~~~~~gi~v~a~ 221 (357)
.+++++|..||+.|++.
T Consensus 180 VdLL~y~~~~~l~Viss 196 (430)
T KOG2018|consen 180 VDLLEYCYNHGLKVISS 196 (430)
T ss_pred hHHHHHHHHcCCceEec
Confidence 58999999999999984
No 222
>PF07287 DUF1446: Protein of unknown function (DUF1446); InterPro: IPR010839 This family consists of several bacterial and plant proteins of around 400 residues in length. The function of this family is unknown.
Probab=23.53 E-value=1.9e+02 Score=27.86 Aligned_cols=86 Identities=17% Similarity=0.178 Sum_probs=50.9
Q ss_pred HHHHHHHHHcCccceEecCCCC---HHHHHHHhccCCceEEeccccccccchhhhHHHHHHHhCCceeecccCccccCCC
Q 018374 155 IGELKMLVVEGKIKYIGLSEAS---PDTIRRAHAVHPITAVQMEWSLLTRDIEEEIIPLCRELGIGIVPYSPLGRGLLGG 231 (357)
Q Consensus 155 ~~aL~~L~~~G~ir~iGvS~~~---~~~l~~~~~~~~~~~~q~~~n~~~~~~~~~~~~~~~~~gi~v~a~spl~~G~L~g 231 (357)
..++.+|.+.|.+.+|-.--.. ...+.+.....+ . --|.......-..+++.|+++||.++..+ +| +.
T Consensus 12 ~~a~~~l~~~g~~d~l~~d~LaE~tma~~~~~~~~~p-~---~gY~~~~~~~L~~~L~~~~~~gIkvI~Na---Gg-~n- 82 (362)
T PF07287_consen 12 PDAAVRLARGGDVDYLVGDYLAERTMAILARAKRKDP-T---KGYAPDFVRDLRPLLPAAAEKGIKVITNA---GG-LN- 82 (362)
T ss_pred HHHHHHHHhcCCCCEEEEecHHHHHHHHHHHHHhhCC-C---CCchHHHHHHHHHHHHHHHhCCCCEEEeC---CC-CC-
Confidence 7788888899999988654322 122221111111 1 11333222223679999999999999863 22 11
Q ss_pred CCcCCCCCCCcccccCCCCCCCcchhhHHHHHHHHHHHHhcCCC
Q 018374 232 KAVVESLPANSFLISHPRFTGENLGKNKQIYARVENLAKRNKCT 275 (357)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ia~~~g~s 275 (357)
-....+.+++++++.|.+
T Consensus 83 --------------------------p~~~a~~v~eia~e~Gl~ 100 (362)
T PF07287_consen 83 --------------------------PAGCADIVREIARELGLS 100 (362)
T ss_pred --------------------------HHHHHHHHHHHHHhcCCC
Confidence 023667888888888775
No 223
>PRK06015 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=23.45 E-value=1.9e+02 Score=25.30 Aligned_cols=59 Identities=10% Similarity=0.237 Sum_probs=41.8
Q ss_pred HHHHHHHHHcCccceEecCC-CCHHHHHHHhccCCceEEeccccccccchhhhHHHHHHHhCCceee
Q 018374 155 IGELKMLVVEGKIKYIGLSE-ASPDTIRRAHAVHPITAVQMEWSLLTRDIEEEIIPLCRELGIGIVP 220 (357)
Q Consensus 155 ~~aL~~L~~~G~ir~iGvS~-~~~~~l~~~~~~~~~~~~q~~~n~~~~~~~~~~~~~~~~~gi~v~a 220 (357)
.+.+++++++..=-.||..+ .+.++++++++..- +++. ++ ....+++++|+++||.++.
T Consensus 43 ~~~I~~l~~~~~~~~vGAGTVl~~e~a~~ai~aGA-~Fiv---SP---~~~~~vi~~a~~~~i~~iP 102 (201)
T PRK06015 43 LDAIRAVAAEVEEAIVGAGTILNAKQFEDAAKAGS-RFIV---SP---GTTQELLAAANDSDVPLLP 102 (201)
T ss_pred HHHHHHHHHHCCCCEEeeEeCcCHHHHHHHHHcCC-CEEE---CC---CCCHHHHHHHHHcCCCEeC
Confidence 77777777664434689987 58999999887643 2221 22 2246899999999999886
No 224
>KOG0059 consensus Lipid exporter ABCA1 and related proteins, ABC superfamily [Lipid transport and metabolism; General function prediction only]
Probab=22.96 E-value=3e+02 Score=29.95 Aligned_cols=73 Identities=14% Similarity=0.040 Sum_probs=54.4
Q ss_pred CCCHHHHHHHHHHHHhHhC--------------------------CCcccEEEeecCCCCCCccccccCCCChhHHHHHH
Q 018374 105 KGTPEYVRSCCEASLKRLG--------------------------VDYIDLYYQHRVDPSVPIEDTVCDSLPTSLNIGEL 158 (357)
Q Consensus 105 ~~~~~~i~~~v~~sL~~Lg--------------------------~d~iDl~~lH~pd~~~~~~~~~~~~~~~~~~~~aL 158 (357)
.....++.+.++.+|+.++ +....+++|..|..--+.. +....|+.+
T Consensus 669 G~~~~di~~~v~~ll~~~~L~~~~~~~~~~ySgG~kRkLs~aialig~p~vi~LDEPstGmDP~-------arr~lW~ii 741 (885)
T KOG0059|consen 669 GLPRSDIGSAIEKLLRLVGLGPYANKQVRTYSGGNKRRLSFAIALIGDPSVILLDEPSTGLDPK-------ARRHLWDII 741 (885)
T ss_pred CCChhHHHHHHHHHHHHcCChhhhccchhhCCCcchhhHHHHHHHhcCCCEEEecCCCCCCCHH-------HHHHHHHHH
Confidence 4566788888999999876 4556777888774322211 224459999
Q ss_pred HHHHHcCccceEecCCCCHHHHHHHhcc
Q 018374 159 KMLVVEGKIKYIGLSEASPDTIRRAHAV 186 (357)
Q Consensus 159 ~~L~~~G~ir~iGvS~~~~~~l~~~~~~ 186 (357)
.++++.|+ ++=+.+|+.++.+.+-..
T Consensus 742 ~~~~k~g~--aiiLTSHsMeE~EaLCtR 767 (885)
T KOG0059|consen 742 ARLRKNGK--AIILTSHSMEEAEALCTR 767 (885)
T ss_pred HHHHhcCC--EEEEEcCCHHHHHHHhhh
Confidence 99999999 899999999998887544
No 225
>PRK09856 fructoselysine 3-epimerase; Provisional
Probab=22.91 E-value=3.6e+02 Score=24.16 Aligned_cols=51 Identities=14% Similarity=0.124 Sum_probs=31.0
Q ss_pred CHHHHHHHhccCCceEEeccccc-------cccchhhhHHHHHHHhCCceeecccCcc
Q 018374 176 SPDTIRRAHAVHPITAVQMEWSL-------LTRDIEEEIIPLCRELGIGIVPYSPLGR 226 (357)
Q Consensus 176 ~~~~l~~~~~~~~~~~~q~~~n~-------~~~~~~~~~~~~~~~~gi~v~a~spl~~ 226 (357)
+..+..+.++...++.+.+..+. +......++.+.++++||.+.++.|...
T Consensus 14 ~l~~~l~~~~~~G~~~vEl~~~~~~~~~~~~~~~~~~~l~~~~~~~gl~v~s~~~~~~ 71 (275)
T PRK09856 14 PIEHAFRDASELGYDGIEIWGGRPHAFAPDLKAGGIKQIKALAQTYQMPIIGYTPETN 71 (275)
T ss_pred CHHHHHHHHHHcCCCEEEEccCCccccccccCchHHHHHHHHHHHcCCeEEEecCccc
Confidence 44444455555666766653211 1111225788899999999998877553
No 226
>cd03313 enolase Enolase: Enolases are homodimeric enzymes that catalyse the reversible dehydration of 2-phospho-D-glycerate to phosphoenolpyruvate as part of the glycolytic and gluconeogenesis pathways. The reaction is facilitated by the presence of metal ions.
Probab=22.83 E-value=7.2e+02 Score=24.25 Aligned_cols=96 Identities=16% Similarity=0.155 Sum_probs=63.1
Q ss_pred CCHHHHHHHHHHHHhHhCCCcccEEEeecCCCCCCccccccCCCChhHHHHHHHHHHHcC--ccceEecC--CCCHHHHH
Q 018374 106 GTPEYVRSCCEASLKRLGVDYIDLYYQHRVDPSVPIEDTVCDSLPTSLNIGELKMLVVEG--KIKYIGLS--EASPDTIR 181 (357)
Q Consensus 106 ~~~~~i~~~v~~sL~~Lg~d~iDl~~lH~pd~~~~~~~~~~~~~~~~~~~~aL~~L~~~G--~ir~iGvS--~~~~~~l~ 181 (357)
++++...+-+.+.++.+ +++++..|-+..+ |+.+.+|.++- .+.-+|=- .++++.+.
T Consensus 261 ~t~~eai~~~~~l~e~~-----~i~~iEdPl~~~D--------------~eg~~~L~~~~g~~ipi~gdE~~~~~~~~~~ 321 (408)
T cd03313 261 LTSEELIDYYKELVKKY-----PIVSIEDPFDEDD--------------WEGWAKLTAKLGDKIQIVGDDLFVTNPERLK 321 (408)
T ss_pred cCHHHHHHHHHHHHHhC-----CcEEEEeCCCCcC--------------HHHHHHHHHhcCCCCeEEcCCcccCCHHHHH
Confidence 45555555555554443 4777777744322 67777787773 44433322 24799999
Q ss_pred HHhccCCceEEecccccccc-chhhhHHHHHHHhCCceee
Q 018374 182 RAHAVHPITAVQMEWSLLTR-DIEEEIIPLCRELGIGIVP 220 (357)
Q Consensus 182 ~~~~~~~~~~~q~~~n~~~~-~~~~~~~~~~~~~gi~v~a 220 (357)
++++....+++|+..|-.-- ....+...+|+.+|+.++.
T Consensus 322 ~~i~~~a~d~v~ik~~~iGGite~~~ia~lA~~~G~~~~~ 361 (408)
T cd03313 322 KGIEKKAANALLIKVNQIGTLTETIEAIKLAKKNGYGVVV 361 (408)
T ss_pred HHHHhCCCCEEEEcccccCCHHHHHHHHHHHHHcCCeEEc
Confidence 99998888889887775432 2236788999999999865
No 227
>COG0626 MetC Cystathionine beta-lyases/cystathionine gamma-synthases [Amino acid transport and metabolism]
Probab=22.33 E-value=3.5e+02 Score=26.39 Aligned_cols=82 Identities=9% Similarity=0.034 Sum_probs=61.6
Q ss_pred hhHHHHHHHHHHHcCccceEecCCCCHHHHHHHhc--cCCceEEeccccccccchh-hhHHHHHHHhCCceeecccCccc
Q 018374 151 TSLNIGELKMLVVEGKIKYIGLSEASPDTIRRAHA--VHPITAVQMEWSLLTRDIE-EEIIPLCRELGIGIVPYSPLGRG 227 (357)
Q Consensus 151 ~~~~~~aL~~L~~~G~ir~iGvS~~~~~~l~~~~~--~~~~~~~q~~~n~~~~~~~-~~~~~~~~~~gi~v~a~spl~~G 227 (357)
+.++..-++.+.++.-|....+...+...+.+.+. ..+..++..+-|++..-.+ ..+.+.|+++|+-++.=+.++.+
T Consensus 112 YG~t~~~~~~~l~~~gi~~~~~d~~~~~~~~~~~~~~~tk~v~lEtPsNP~l~v~DI~~i~~~A~~~g~~vvVDNTfatP 191 (396)
T COG0626 112 YGGTYRLFEKILQKFGVEVTFVDPGDDEALEAAIKEPNTKLVFLETPSNPLLEVPDIPAIARLAKAYGALVVVDNTFATP 191 (396)
T ss_pred cchHHHHHHHHHHhcCeEEEEECCCChHHHHHHhcccCceEEEEeCCCCcccccccHHHHHHHHHhcCCEEEEECCcccc
Confidence 45568999999888888888777777766655554 4566677778888776433 57889999999888888888887
Q ss_pred cCCCC
Q 018374 228 LLGGK 232 (357)
Q Consensus 228 ~L~g~ 232 (357)
.+...
T Consensus 192 ~~q~P 196 (396)
T COG0626 192 VLQRP 196 (396)
T ss_pred cccCh
Confidence 76654
No 228
>TIGR03822 AblA_like_2 lysine-2,3-aminomutase-related protein. Members of this protein form a distinctive clade, homologous to lysine-2,3-aminomutase (of Bacillus, Clostridium, and methanogenic archaea) and likely similar in function. Members of this family are found in Rhodopseudomonas, Caulobacter crescentus, Bradyrhizobium, etc.
Probab=22.17 E-value=6.6e+02 Score=23.55 Aligned_cols=102 Identities=17% Similarity=0.102 Sum_probs=50.9
Q ss_pred CHHHHHHHHHHHHHc-CCCeEeCccCcCCC--chHHHHHHHHhcC----CCCCeEEEeeeeeccCCCcccccCCCHHHHH
Q 018374 40 SEEDGISIIKHAFNK-GITFFDTADVYGAH--ANEVLVGKVLKQL----PRKKIQLASKFGVVSMAPTSVIVKGTPEYVR 112 (357)
Q Consensus 40 ~~~~~~~~l~~A~~~-Gin~~DtA~~Yg~g--~sE~~lG~al~~~----~R~~~~I~tK~~~~~~~~~~~~~~~~~~~i~ 112 (357)
+.++..++++..-++ ||+-+--+. |+- .+...+-+.++.. ....+-|.|+.... .+..+.
T Consensus 120 ~~~e~~~~i~~i~~~~~I~~VilSG--GDPl~~~~~~L~~ll~~l~~i~~v~~iri~Tr~~v~-----------~p~rit 186 (321)
T TIGR03822 120 SPAELDAAFAYIADHPEIWEVILTG--GDPLVLSPRRLGDIMARLAAIDHVKIVRFHTRVPVA-----------DPARVT 186 (321)
T ss_pred CHHHHHHHHHHHHhCCCccEEEEeC--CCcccCCHHHHHHHHHHHHhCCCccEEEEeCCCccc-----------ChhhcC
Confidence 556777888776655 887553111 110 1222333333332 22334566664322 122333
Q ss_pred HHHHHHHhHhCCCcccEEEeecCCCCCCccccccCCCChhHHHHHHHHHHHcCc
Q 018374 113 SCCEASLKRLGVDYIDLYYQHRVDPSVPIEDTVCDSLPTSLNIGELKMLVVEGK 166 (357)
Q Consensus 113 ~~v~~sL~~Lg~d~iDl~~lH~pd~~~~~~~~~~~~~~~~~~~~aL~~L~~~G~ 166 (357)
+.+-+.|...|.. ..+.+|...+..- ...++++++.|++.|.
T Consensus 187 ~ell~~L~~~g~~--v~i~l~~~h~~el----------~~~~~~ai~~L~~~Gi 228 (321)
T TIGR03822 187 PALIAALKTSGKT--VYVALHANHAREL----------TAEARAACARLIDAGI 228 (321)
T ss_pred HHHHHHHHHcCCc--EEEEecCCChhhc----------CHHHHHHHHHHHHcCC
Confidence 3444455555632 2466676433211 2445889999998885
No 229
>PF11590 DNAPolymera_Pol: DNA polymerase catalytic subunit Pol; InterPro: IPR021639 This family of proteins represents the catalytic subunit, Pol, of the Herpes simplex virus DNA polymerase. Pol binds UL42, making up the DNA polymerase. UL42 is a processivity subunit which binds to the C-terminal of Pol in a similar way that the cell cycle regulator p21 binds to PCNA []. ; GO: 0003887 DNA-directed DNA polymerase activity, 0004523 ribonuclease H activity; PDB: 1DML_H.
Probab=21.84 E-value=76 Score=19.93 Aligned_cols=33 Identities=24% Similarity=0.420 Sum_probs=19.5
Q ss_pred ccccceeccccccCCCCCCCCHHHHHHHHHHHHH
Q 018374 20 EVSKLGFGCMGLTGMYNSPVSEEDGISIIKHAFN 53 (357)
Q Consensus 20 ~vs~lglG~~~~g~~~~~~~~~~~~~~~l~~A~~ 53 (357)
+++.-||.+.+.|...... .+++.++-|.+|++
T Consensus 6 Rl~~AgF~~i~~g~g~~~~-~eeEt~qkL~~AF~ 38 (41)
T PF11590_consen 6 RLRSAGFATIGSGAGLPSS-EEEETRQKLRRAFD 38 (41)
T ss_dssp HHHHTT-EEECTTS-------HHHHHHHHHHHHH
T ss_pred HHHHHhHHHhccCccccch-hhHHHHHHHHHHHH
Confidence 3566677777776533333 67788999999886
No 230
>TIGR00035 asp_race aspartate racemase.
Probab=21.77 E-value=3.4e+02 Score=23.90 Aligned_cols=82 Identities=11% Similarity=0.020 Sum_probs=50.6
Q ss_pred CCHHHHHHHHHHHHhHhCCCcccEEEeecCCCCCCccccc-cC-CCChhHHHHHHHHHHHcCccceEecCCCCHHH-HHH
Q 018374 106 GTPEYVRSCCEASLKRLGVDYIDLYYQHRVDPSVPIEDTV-CD-SLPTSLNIGELKMLVVEGKIKYIGLSEASPDT-IRR 182 (357)
Q Consensus 106 ~~~~~i~~~v~~sL~~Lg~d~iDl~~lH~pd~~~~~~~~~-~~-~~~~~~~~~aL~~L~~~G~ir~iGvS~~~~~~-l~~ 182 (357)
-+.+.+++-++..-.+.+.++++.+.+++|+......... .. ........++++.|.+.| +..|-+...+... +.+
T Consensus 14 at~~~~~~i~~~~~a~~d~~~~~~i~~~~~~~~dr~~~~~~~~~~~~~~~l~~~~~~L~~~g-~d~iviaCNTah~~~~~ 92 (229)
T TIGR00035 14 ATAELFRRINEKTKAKRDQEHPAEVLFNNPNIPDRTAYILGRGEDRPRPILIDIAVKLENAG-ADFIIMPCNTAHKFAED 92 (229)
T ss_pred HHHHHHHHHHHHhHHhcCCCCCceeeeeCCCHHHHHHHHhcCCcchHHHHHHHHHHHHHHcC-CCEEEECCccHHHHHHH
Confidence 3566777777777778999999999999996432111100 00 112334577777777665 7888887765554 444
Q ss_pred HhccCC
Q 018374 183 AHAVHP 188 (357)
Q Consensus 183 ~~~~~~ 188 (357)
+.+..+
T Consensus 93 l~~~~~ 98 (229)
T TIGR00035 93 IQKAIG 98 (229)
T ss_pred HHHhCC
Confidence 433333
No 231
>smart00642 Aamy Alpha-amylase domain.
Probab=21.17 E-value=85 Score=26.42 Aligned_cols=22 Identities=14% Similarity=0.226 Sum_probs=18.0
Q ss_pred hhhHHHHHHHhCCceeecccCc
Q 018374 204 EEEIIPLCRELGIGIVPYSPLG 225 (357)
Q Consensus 204 ~~~~~~~~~~~gi~v~a~spl~ 225 (357)
.+++++.|+++||.|+.=-++.
T Consensus 72 ~~~lv~~~h~~Gi~vilD~V~N 93 (166)
T smart00642 72 FKELVDAAHARGIKVILDVVIN 93 (166)
T ss_pred HHHHHHHHHHCCCEEEEEECCC
Confidence 3789999999999999755554
No 232
>cd00408 DHDPS-like Dihydrodipicolinate synthase family. A member of the class I aldolases, which use an active-site lysine which stablilzes a reaction intermediate via Schiff base formation, and have TIM beta/alpha barrel fold. The dihydrodipicolinate synthase family comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways and includes such proteins as N-acetylneuraminate lyase, MosA protein, 5-keto-4-deoxy-glucarate dehydratase, trans-o-hydroxybenzylidenepyruvate hydratase-aldolase, trans-2'-carboxybenzalpyruvate hydratase-aldolase, and 2-keto-3-deoxy- gluconate aldolase. The family is also referred to as the N-acetylneuraminate lyase (NAL) family.
Probab=21.12 E-value=6.2e+02 Score=22.87 Aligned_cols=54 Identities=9% Similarity=0.189 Sum_probs=32.1
Q ss_pred CCHHHHHHHHHHHHHcCCCeEeCccCcCC----Cch--HHHHHHHHhcCCCCCeEEEeeee
Q 018374 39 VSEEDGISIIKHAFNKGITFFDTADVYGA----HAN--EVLVGKVLKQLPRKKIQLASKFG 93 (357)
Q Consensus 39 ~~~~~~~~~l~~A~~~Gin~~DtA~~Yg~----g~s--E~~lG~al~~~~R~~~~I~tK~~ 93 (357)
+|.+...+.++..++.|++-|-....-|- ... ++++..+.+. ...++-|..-++
T Consensus 15 iD~~~~~~~i~~l~~~Gv~gi~~~GstGE~~~ls~~Er~~l~~~~~~~-~~~~~~vi~gv~ 74 (281)
T cd00408 15 VDLDALRRLVEFLIEAGVDGLVVLGTTGEAPTLTDEERKEVIEAVVEA-VAGRVPVIAGVG 74 (281)
T ss_pred cCHHHHHHHHHHHHHcCCCEEEECCCCcccccCCHHHHHHHHHHHHHH-hCCCCeEEEecC
Confidence 48888999999999999988764444332 222 2444444444 233444444443
No 233
>cd01966 Nitrogenase_NifN_1 Nitrogenase_nifN1: A subgroup of the NifN subunit of the NifEN complex: NifN forms an alpha2beta2 tetramer with NifE. NifN and nifE are structurally homologous to nitrogenase MoFe protein beta and alpha subunits respectively. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of the MoFe protein. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to the NifEN complex where it is further processed to FeMoco. The nifEN bound precursor of FeMoco has been identified as a molybdenum-free, iron- and sulfur- containing analog of FeMoco. It has been suggested that this nifEN bound precursor also acts as a cofactor precursor in nitrogenase systems which require a cofactor other than FeMoco: i.e. iron-vanadium cofactor (FeVco) or iron only cofactor (FeFeco).
Probab=21.09 E-value=7.8e+02 Score=24.03 Aligned_cols=112 Identities=11% Similarity=0.045 Sum_probs=58.1
Q ss_pred cCcCCCchHHHHHHHHhcC----CCCCeEEEeeeeeccCCCcccccCCCHHHHHHHHHHHHhHhC-CCcccEEEeecCCC
Q 018374 63 DVYGAHANEVLVGKVLKQL----PRKKIQLASKFGVVSMAPTSVIVKGTPEYVRSCCEASLKRLG-VDYIDLYYQHRVDP 137 (357)
Q Consensus 63 ~~Yg~g~sE~~lG~al~~~----~R~~~~I~tK~~~~~~~~~~~~~~~~~~~i~~~v~~sL~~Lg-~d~iDl~~lH~pd~ 137 (357)
..|| .|+-|-+++++. +.+-++|.|-+...-- .-+-+.+.+.++ ++.- ...+.++.+|.|+.
T Consensus 61 ~VfG---g~~~L~~~i~~~~~~~~p~~I~V~ttc~~eiI-------GdDi~~v~~~~~---~~~p~~~~~~vi~v~t~gf 127 (417)
T cd01966 61 TILG---GGENLEEALDTLAERAKPKVIGLLSTGLTETR-------GEDIAGALKQFR---AEHPELADVPVVYVSTPDF 127 (417)
T ss_pred EEEC---CHHHHHHHHHHHHHhcCCCEEEEECCCccccc-------ccCHHHHHHHHH---hhccccCCCeEEEecCCCC
Confidence 4677 566666666553 4455677777654322 113333333333 2310 01367899999877
Q ss_pred CCCccccccCCCChhHHHHHHHH-H--------HHcCccceEecCCC---CHHHHHHHhccCCceEEe
Q 018374 138 SVPIEDTVCDSLPTSLNIGELKM-L--------VVEGKIKYIGLSEA---SPDTIRRAHAVHPITAVQ 193 (357)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~aL~~-L--------~~~G~ir~iGvS~~---~~~~l~~~~~~~~~~~~q 193 (357)
......- +..++++|-+ + +.+++|-=||-++. +.++++++++...+.++.
T Consensus 128 ~g~~~~G------~~~a~~al~~~l~~~~~~~~~~~~~VNiig~~~~~~~D~~eik~lL~~~Gl~v~~ 189 (417)
T cd01966 128 EGSLEDG------WAAAVEAIIEALVEPGSRTVTDPRQVNLLPGAHLTPGDVEELKDIIEAFGLEPII 189 (417)
T ss_pred CCcHHHH------HHHHHHHHHHHhcccccccCCCCCcEEEECCCCCCHHHHHHHHHHHHHcCCceEE
Confidence 5432211 2223444432 2 22455777764433 445677777766666544
No 234
>PF13167 GTP-bdg_N: GTP-binding GTPase N-terminal
Probab=20.99 E-value=57 Score=24.89 Aligned_cols=67 Identities=16% Similarity=0.188 Sum_probs=50.2
Q ss_pred HHHHHHHHHHHHhcCCChHHHHHHHHHhCCCCeEEecCCCCHHHHHHHHhccC-------CCCCHHHHHHHHhhCC
Q 018374 259 KQIYARVENLAKRNKCTPAQLSLAWLLRQGDDIVPIPGTTKIKNLDENIGSLM-------MKLTKEDMKEILNFVP 327 (357)
Q Consensus 259 ~~~~~~l~~ia~~~g~s~~q~al~~~l~~~~v~~~ivG~~~~~~l~enl~a~~-------~~L~~~~~~~i~~~~~ 327 (357)
...++++..+++.-|..+..-..+ .+.+|. ....+|..+.+.|.+.+...+ -+||+.+...|++.+.
T Consensus 7 ~~~l~El~~L~~t~g~~vv~~~~q-~~~~~~-p~~~iG~GK~eei~~~~~~~~~d~vvfd~~Lsp~Q~rNLe~~~~ 80 (95)
T PF13167_consen 7 EESLEELEELAETAGYEVVGTVVQ-KRRKPD-PKTYIGSGKVEEIKELIEELDADLVVFDNELSPSQQRNLEKALG 80 (95)
T ss_pred HHHHHHHHHHHHHCCCeEEEEEEe-cCCCCC-cceeechhHHHHHHHHHhhcCCCEEEECCCCCHHHHHHHHHHHC
Confidence 466789999999888876542222 223444 567889999999999887553 4799999999999874
No 235
>PRK01033 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=20.96 E-value=6.2e+02 Score=22.81 Aligned_cols=124 Identities=15% Similarity=0.120 Sum_probs=69.2
Q ss_pred HHHHHHcCCCeEeCcc-CcCCCchHHHHHHHHhcCCCCCeEEEeeeeec-------cCCCcccccCCCHHHHHHHHHHHH
Q 018374 48 IKHAFNKGITFFDTAD-VYGAHANEVLVGKVLKQLPRKKIQLASKFGVV-------SMAPTSVIVKGTPEYVRSCCEASL 119 (357)
Q Consensus 48 l~~A~~~Gin~~DtA~-~Yg~g~sE~~lG~al~~~~R~~~~I~tK~~~~-------~~~~~~~~~~~~~~~i~~~v~~sL 119 (357)
++.+++.|+..++... .|. +-..+-+.++....+++.++.++... ...++....+.++..+ -+.+
T Consensus 89 ~~~l~~~G~~~vvigs~~~~---~~~~~~~~~~~~~~~~i~vsiD~k~g~~~~~~v~~~gw~~~~~~~~~e~----~~~~ 161 (258)
T PRK01033 89 AKKIFSLGVEKVSINTAALE---DPDLITEAAERFGSQSVVVSIDVKKNLGGKFDVYTHNGTKKLKKDPLEL----AKEY 161 (258)
T ss_pred HHHHHHCCCCEEEEChHHhc---CHHHHHHHHHHhCCCcEEEEEEEecCCCCcEEEEEcCCeecCCCCHHHH----HHHH
Confidence 3344467998887543 344 34556666665555667777776322 0000000012233222 2333
Q ss_pred hHhCCCcccEEEeecCCCCCCccccccCCCChhHHHHHHHHHHHcCccceEecCC-CCHHHHHHHhccCCce
Q 018374 120 KRLGVDYIDLYYQHRVDPSVPIEDTVCDSLPTSLNIGELKMLVVEGKIKYIGLSE-ASPDTIRRAHAVHPIT 190 (357)
Q Consensus 120 ~~Lg~d~iDl~~lH~pd~~~~~~~~~~~~~~~~~~~~aL~~L~~~G~ir~iGvS~-~~~~~l~~~~~~~~~~ 190 (357)
+.+| ++-+.+|..+......... |+.++++++.=.+.-|.-.+ .+.+.+.++++...++
T Consensus 162 ~~~g---~~~ii~~~i~~~G~~~G~d---------~~~i~~~~~~~~ipvIasGGv~s~eD~~~l~~~~Gvd 221 (258)
T PRK01033 162 EALG---AGEILLNSIDRDGTMKGYD---------LELLKSFRNALKIPLIALGGAGSLDDIVEAILNLGAD 221 (258)
T ss_pred HHcC---CCEEEEEccCCCCCcCCCC---------HHHHHHHHhhCCCCEEEeCCCCCHHHHHHHHHHCCCC
Confidence 4555 5778888876653333222 88888888876677776665 3678888887443444
No 236
>PRK10551 phage resistance protein; Provisional
Probab=20.89 E-value=6.6e+02 Score=25.36 Aligned_cols=115 Identities=9% Similarity=0.145 Sum_probs=65.2
Q ss_pred CeEEEeeeeeccCCCcccccCCCHHHHHHHHHHHHhHhCCCcccEEEeecCCCCCCccccccCCCChhHHHHHHHHHHHc
Q 018374 85 KIQLASKFGVVSMAPTSVIVKGTPEYVRSCCEASLKRLGVDYIDLYYQHRVDPSVPIEDTVCDSLPTSLNIGELKMLVVE 164 (357)
Q Consensus 85 ~~~I~tK~~~~~~~~~~~~~~~~~~~i~~~v~~sL~~Lg~d~iDl~~lH~pd~~~~~~~~~~~~~~~~~~~~aL~~L~~~ 164 (357)
.+.|+..+... .+..+.+...+.+.++.++....-+ .+.-.+... .+ ...+.+.++.|++.
T Consensus 349 ~~~lsINis~~---------~l~~~~f~~~l~~~l~~~~~~~~~L-vlEItE~~~-~~--------~~~~~~~l~~Lr~~ 409 (518)
T PRK10551 349 GAKLGINISPA---------HLHSDSFKADVQRLLASLPADHFQI-VLEITERDM-VQ--------EEEATKLFAWLHSQ 409 (518)
T ss_pred CcEEEEEeCHH---------HHCCchHHHHHHHHHHhCCCCcceE-EEEEechHh-cC--------CHHHHHHHHHHHHC
Confidence 45566665443 3344567778888888888654332 222221110 00 01236788999999
Q ss_pred CccceEecCCCC--HHHHHHHhccCCceEEecccccccc--------chhhhHHHHHHHhCCceeec
Q 018374 165 GKIKYIGLSEAS--PDTIRRAHAVHPITAVQMEWSLLTR--------DIEEEIIPLCRELGIGIVPY 221 (357)
Q Consensus 165 G~ir~iGvS~~~--~~~l~~~~~~~~~~~~q~~~n~~~~--------~~~~~~~~~~~~~gi~v~a~ 221 (357)
|- .|.+.+|. ...+..+ ...+++.+=+.-+.... ..-..+++.|++.|+.+++=
T Consensus 410 G~--~ialDDFGtg~ssl~~L-~~l~vD~lKID~~fv~~i~~~~~~~~il~~ii~la~~lgi~vVAE 473 (518)
T PRK10551 410 GI--EIAIDDFGTGHSALIYL-ERFTLDYLKIDRGFIQAIGTETVTSPVLDAVLTLAKRLNMLTVAE 473 (518)
T ss_pred CC--EEEEECCCCCchhHHHH-HhCCCCEEEECHHHHhhhccChHHHHHHHHHHHHHHHCCCEEEEE
Confidence 98 67777663 2223333 22345555444333221 11256899999999999885
No 237
>PF09391 DUF2000: Protein of unknown function (DUF2000); InterPro: IPR018988 This is a family of proteins of unknown function. The structure of one of the proteins in this family has been shown to adopt an alpha beta fold. ; PDB: 2GAX_A.
Probab=20.82 E-value=2.1e+02 Score=23.22 Aligned_cols=47 Identities=15% Similarity=0.167 Sum_probs=27.0
Q ss_pred CHHHHHHHHHHHHHcCCCeEeCccCcCCCchHHHHHHHHhcCCCCCe
Q 018374 40 SEEDGISIIKHAFNKGITFFDTADVYGAHANEVLVGKVLKQLPRKKI 86 (357)
Q Consensus 40 ~~~~~~~~l~~A~~~Gin~~DtA~~Yg~g~sE~~lG~al~~~~R~~~ 86 (357)
+.++..++..+|.+.|+.++|-...=-...+++-..+.+++.+.+++
T Consensus 62 ~~~~L~~l~~~a~~~~i~~~~F~~~aq~~~~y~e~~~~~~~~~~~~l 108 (133)
T PF09391_consen 62 NSEQLRELRQKALEREITVVDFTDEAQSTGHYEEYRAAVAATPEEDL 108 (133)
T ss_dssp -HHHHHHHHHHHHHTT---EEEEGGGGG---HHHHHHHHTT--TTT-
T ss_pred CHHHHHHHHHHHHHCCCeEEeChHHHhhCCCHHHHHHHHhcCChhhc
Confidence 67899999999999999988854433323356666666766555555
No 238
>PRK08084 DNA replication initiation factor; Provisional
Probab=20.78 E-value=4.2e+02 Score=23.45 Aligned_cols=48 Identities=8% Similarity=0.088 Sum_probs=32.1
Q ss_pred ccEEEeecCCCCCCccccccCCCChhHHHHHHHHHHHcCccceEecCCCCHHHH
Q 018374 127 IDLYYQHRVDPSVPIEDTVCDSLPTSLNIGELKMLVVEGKIKYIGLSEASPDTI 180 (357)
Q Consensus 127 iDl~~lH~pd~~~~~~~~~~~~~~~~~~~~aL~~L~~~G~ir~iGvS~~~~~~l 180 (357)
.|++.|...+......+. -......++.+++.|+++-|+.|+.++..+
T Consensus 98 ~dlliiDdi~~~~~~~~~------~~~lf~l~n~~~e~g~~~li~ts~~~p~~l 145 (235)
T PRK08084 98 LSLVCIDNIECIAGDELW------EMAIFDLYNRILESGRTRLLITGDRPPRQL 145 (235)
T ss_pred CCEEEEeChhhhcCCHHH------HHHHHHHHHHHHHcCCCeEEEeCCCChHHc
Confidence 588888776543221111 012267788889999999999999877763
No 239
>PRK02714 O-succinylbenzoate synthase; Provisional
Probab=20.69 E-value=7e+02 Score=23.29 Aligned_cols=71 Identities=10% Similarity=0.046 Sum_probs=52.1
Q ss_pred HHHHHHHHHcCccc-eEecCCCCHHHHHHHhccCCceEEeccccccccchhhhHHHHHHHhCCceeecccCccc
Q 018374 155 IGELKMLVVEGKIK-YIGLSEASPDTIRRAHAVHPITAVQMEWSLLTRDIEEEIIPLCRELGIGIVPYSPLGRG 227 (357)
Q Consensus 155 ~~aL~~L~~~G~ir-~iGvS~~~~~~l~~~~~~~~~~~~q~~~n~~~~~~~~~~~~~~~~~gi~v~a~spl~~G 227 (357)
++.+..|+++-.+- +.|=|-++...+..++...-.+++|+..+..-. -.++.+.|+.+||.++..+.+..|
T Consensus 206 ~~~~~~l~~~~~~Pia~DEs~~~~~d~~~~~~~~a~d~v~ik~~k~GG--i~~~~~~a~~~gi~~~~~~~~es~ 277 (320)
T PRK02714 206 FDEMLQLSQDYQTPIALDESVANLAQLQQCYQQGWRGIFVIKPAIAGS--PSRLRQFCQQHPLDAVFSSVFETA 277 (320)
T ss_pred HHHHHHHHHhCCCCEEECCccCCHHHHHHHHHcCCCCEEEEcchhcCC--HHHHHHHHHHhCCCEEEEechhhH
Confidence 77778887765433 556667889999999888778888887665433 246788999999999987555443
No 240
>cd08556 GDPD Glycerophosphodiester phosphodiesterase domain as found in prokaryota and eukaryota, and similar proteins. The typical glycerophosphodiester phosphodiesterase domain (GDPD) consists of a TIM barrel and a small insertion domain named the GDPD-insertion (GDPD-I) domain, which is specific for GDPD proteins. This family corresponds to both typical GDPD domain and GDPD-like domain which lacks the GDPD-I region. Members in this family mainly consist of a large family of prokaryotic and eukaryotic glycerophosphodiester phosphodiesterases (GP-GDEs, EC 3.1.4.46), and a number of uncharacterized homologs. Sphingomyelinases D (SMases D) (sphingomyelin phosphodiesterase D, EC 3.1.4.41) from spider venom, SMases D-like proteins, and phospholipase D (PLD) from several pathogenic bacteria are also included in this family. GDPD plays an essential role in glycerol metabolism and catalyzes the hydrolysis of glycerophosphodiesters to sn-glycerol-3-phosphate (G3P) and the corresponding alcoho
Probab=20.67 E-value=3.1e+02 Score=22.73 Aligned_cols=23 Identities=13% Similarity=0.283 Sum_probs=18.9
Q ss_pred CHHHHHHHHHHHHHcCCCeEeCc
Q 018374 40 SEEDGISIIKHAFNKGITFFDTA 62 (357)
Q Consensus 40 ~~~~~~~~l~~A~~~Gin~~DtA 62 (357)
-.+.....++.|++.|.+.|++-
T Consensus 11 ~pent~~a~~~a~~~g~~~iE~D 33 (189)
T cd08556 11 APENTLAAFRKALEAGADGVELD 33 (189)
T ss_pred CCchHHHHHHHHHHcCCCEEEEE
Confidence 34678999999999999988744
No 241
>TIGR03278 methan_mark_10 putative methanogenesis marker protein 10. Members of this protein family, to date, are found in a completed prokaryotic genome if and only if the species is one of the archaeal methanogens. The presence of motifs with seven invariant Cys residues in the N-terminal 50 residues, including three instances of CXXC, would be consistent with function as an oxidoreductase with FeS clusters. The exact function is unknown, but likely is linked to methanogenesis. In most genomes, the member of this family is encoded by a gene next to, and divergently transcribed from, the methyl coenzyme M reductase operon.
Probab=20.62 E-value=8.1e+02 Score=23.99 Aligned_cols=83 Identities=12% Similarity=-0.108 Sum_probs=43.6
Q ss_pred CCHHHHHHHHHHHHhHhCCCcccEEEeecCCCCCCccccccCCCChhHHHHHHHHHHHcCccceEecCC---C-CHHHHH
Q 018374 106 GTPEYVRSCCEASLKRLGVDYIDLYYQHRVDPSVPIEDTVCDSLPTSLNIGELKMLVVEGKIKYIGLSE---A-SPDTIR 181 (357)
Q Consensus 106 ~~~~~i~~~v~~sL~~Lg~d~iDl~~lH~pd~~~~~~~~~~~~~~~~~~~~aL~~L~~~G~ir~iGvS~---~-~~~~l~ 181 (357)
.+.+.+.+.+.+.+.-... ..+-+.+-...+..-.+.. .+.|+.+++.|.--+++.+| + +.+.++
T Consensus 54 ~t~~evl~ev~~d~~~~~~-~~ggVtisGGGepl~~~~l----------~eLl~~lk~~gi~taI~~TnG~~l~~~e~~~ 122 (404)
T TIGR03278 54 IPPQVVLGEVQTSLGFRTG-RDTKVTISGGGDVSCYPEL----------EELTKGLSDLGLPIHLGYTSGKGFDDPEIAE 122 (404)
T ss_pred CCHHHHHHHHHHHHHHhcC-CCCEEEEECCcccccCHHH----------HHHHHHHHhCCCCEEEeCCCCcccCCHHHHH
Confidence 4566777777776665431 2455555555333333344 66677777777655666333 3 445555
Q ss_pred HHhccCCceEEeccccccc
Q 018374 182 RAHAVHPITAVQMEWSLLT 200 (357)
Q Consensus 182 ~~~~~~~~~~~q~~~n~~~ 200 (357)
++++. .++.+++..+..+
T Consensus 123 ~L~~~-gld~v~iSvka~d 140 (404)
T TIGR03278 123 FLIDN-GVREVSFTVFATD 140 (404)
T ss_pred HHHHc-CCCEEEEecccCC
Confidence 55443 1244444444443
No 242
>PF01081 Aldolase: KDPG and KHG aldolase; InterPro: IPR000887 4-Hydroxy-2-oxoglutarate aldolase (4.1.3.16 from EC) (KHG-aldolase) catalyzes the interconversion of 4-hydroxy-2-oxoglutarate into pyruvate and glyoxylate. Phospho-2-dehydro-3-deoxygluconate aldolase (4.1.2.14 from EC) (KDPG-aldolase) catalyzes the interconversion of 6-phospho-2-dehydro-3-deoxy-D-gluconate into pyruvate and glyceraldehyde 3-phosphate. These two enzymes are structurally and functionally related []. They are both homotrimeric proteins of approximately 220 amino-acid residues. They are class I aldolases whose catalytic mechanism involves the formation of a Schiff-base intermediate between the substrate and the epsilon-amino group of a lysine residue. In both enzymes, an arginine is required for catalytic activity.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3VCR_A 1FQ0_A 1EUN_A 1EUA_B 1FWR_A 2C0A_B 1WBH_A 1WAU_A 2YW3_B 2YW4_A ....
Probab=20.53 E-value=2.7e+02 Score=24.25 Aligned_cols=58 Identities=22% Similarity=0.297 Sum_probs=38.2
Q ss_pred HHHHHHHHHcCccceEecCC-CCHHHHHHHhccC-CceEEeccccccccchhhhHHHHHHHhCCceee
Q 018374 155 IGELKMLVVEGKIKYIGLSE-ASPDTIRRAHAVH-PITAVQMEWSLLTRDIEEEIIPLCRELGIGIVP 220 (357)
Q Consensus 155 ~~aL~~L~~~G~ir~iGvS~-~~~~~l~~~~~~~-~~~~~q~~~n~~~~~~~~~~~~~~~~~gi~v~a 220 (357)
+++++.++++--=-.||..+ .+.++++.+++.. .|-+ ++ ....+++++|+++||.++.
T Consensus 47 ~~~I~~l~~~~p~~~vGAGTV~~~e~a~~a~~aGA~Fiv-----SP---~~~~~v~~~~~~~~i~~iP 106 (196)
T PF01081_consen 47 LEAIEALRKEFPDLLVGAGTVLTAEQAEAAIAAGAQFIV-----SP---GFDPEVIEYAREYGIPYIP 106 (196)
T ss_dssp HHHHHHHHHHHTTSEEEEES--SHHHHHHHHHHT-SEEE-----ES---S--HHHHHHHHHHTSEEEE
T ss_pred HHHHHHHHHHCCCCeeEEEeccCHHHHHHHHHcCCCEEE-----CC---CCCHHHHHHHHHcCCcccC
Confidence 55555555433334689987 5899999988764 3322 12 2346899999999999987
No 243
>TIGR01163 rpe ribulose-phosphate 3-epimerase. This family consists of Ribulose-phosphate 3-epimerase, also known as pentose-5-phosphate 3-epimerase (PPE). PPE converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. It has been found in a wide range of bacteria, archebacteria, fungi and plants.
Probab=20.45 E-value=5.4e+02 Score=21.89 Aligned_cols=100 Identities=12% Similarity=0.065 Sum_probs=55.8
Q ss_pred CCHHHHHHHHHHHHhHhCCCcccEEEeecCCCCCCccccccCCCChhHHHHHHHHHHHcCccce-EecCCCCHHHHHHHh
Q 018374 106 GTPEYVRSCCEASLKRLGVDYIDLYYQHRVDPSVPIEDTVCDSLPTSLNIGELKMLVVEGKIKY-IGLSEASPDTIRRAH 184 (357)
Q Consensus 106 ~~~~~i~~~v~~sL~~Lg~d~iDl~~lH~pd~~~~~~~~~~~~~~~~~~~~aL~~L~~~G~ir~-iGvS~~~~~~l~~~~ 184 (357)
.++..+.+.++ .+.+.|.|+|-+-....+-.. ..... ++.++++++...+.- +.+-..+...+.+.+
T Consensus 8 ~~~~~~~~~~~-~~~~~g~d~i~~~~~Dg~~~~-~~~~~----------~~~v~~i~~~~~~~v~v~lm~~~~~~~~~~~ 75 (210)
T TIGR01163 8 ADFARLGEEVK-AVEEAGADWIHVDVMDGHFVP-NLTFG----------PPVLEALRKYTDLPIDVHLMVENPDRYIEDF 75 (210)
T ss_pred CCHHHHHHHHH-HHHHcCCCEEEEcCCCCCCCC-CcccC----------HHHHHHHHhcCCCcEEEEeeeCCHHHHHHHH
Confidence 34555555555 345777777666533332211 11223 667777776433322 556666666555555
Q ss_pred ccCCceEEeccccccccchhhhHHHHHHHhCCcee
Q 018374 185 AVHPITAVQMEWSLLTRDIEEEIIPLCRELGIGIV 219 (357)
Q Consensus 185 ~~~~~~~~q~~~n~~~~~~~~~~~~~~~~~gi~v~ 219 (357)
.....+.+|++..... .....++.++++|+.+.
T Consensus 76 ~~~gadgv~vh~~~~~--~~~~~~~~~~~~g~~~~ 108 (210)
T TIGR01163 76 AEAGADIITVHPEASE--HIHRLLQLIKDLGAKAG 108 (210)
T ss_pred HHcCCCEEEEccCCch--hHHHHHHHHHHcCCcEE
Confidence 5666788887654422 12467788888887653
No 244
>PF01175 Urocanase: Urocanase; InterPro: IPR023637 Urocanase [] (also known as imidazolonepropionate hydrolase or urocanate hydratase) is the enzyme that catalyzes the second step in the degradation of histidine, the hydration of urocanate into imidazolonepropionate. urocanate + H2O = 4,5-dihydro-4-oxo-5-imidazolepropanoate Urocanase is found in some bacteria (gene hutU), in the liver of many vertebrates and has also been found in the plant Trifolium repens (white clover). Urocanase is a protein of about 60 Kd, it binds tightly to NAD+ and uses it as an electrophil cofactor. A conserved cysteine has been found to be important for the catalytic mechanism and could be involved in the binding of the NAD+. This enzyme is a symmetric homodimer with tightly bound NAD+ cofactors. Each subunit consists of a typical NAD-binding domain inserted into a larger core domain that forms the dimer interface []. This entry represents the Urocanase subunit structural domain.; GO: 0016153 urocanate hydratase activity; PDB: 2V7G_A 1UWK_A 1UWL_B 1W1U_B 2FKN_C 1X87_B.
Probab=20.33 E-value=1.6e+02 Score=29.64 Aligned_cols=117 Identities=18% Similarity=0.208 Sum_probs=69.1
Q ss_pred HHHHHHHHHcCCCeEe--CccCcCC--------CchHHHHHHHHhcC----CCCCeEEEeeeeeccCCCc---------c
Q 018374 45 ISIIKHAFNKGITFFD--TADVYGA--------HANEVLVGKVLKQL----PRKKIQLASKFGVVSMAPT---------S 101 (357)
Q Consensus 45 ~~~l~~A~~~Gin~~D--tA~~Yg~--------g~sE~~lG~al~~~----~R~~~~I~tK~~~~~~~~~---------~ 101 (357)
.+-+.+..+.|+..+= ||..|-- |.-|.++ .+-++. .+-+++|++=+|......+ .
T Consensus 105 ~e~f~~l~~~GltmYGQMTAGsw~YIG~QGIvqGTyeT~~-~aark~~g~~L~Gk~~lTaGLGGMgGAQplA~~m~g~v~ 183 (546)
T PF01175_consen 105 WEHFERLEALGLTMYGQMTAGSWIYIGPQGIVQGTYETFL-NAARKHFGGDLAGKLFLTAGLGGMGGAQPLAATMAGGVG 183 (546)
T ss_dssp HHHHHHHHHTT---B-TTTTTTT---TTHHHHHHHHHHHH-HHHHHHSTTS-TT-EEEEE--STTCCHHHHHHHHTT-EE
T ss_pred HHHHHHHHhccchhhccccccceEEEcccceeehhhHHHH-HHHHHhcCCCCcceEEEEecccccccchHHHHHhcCceE
Confidence 4556677788988763 6655531 3334333 333432 6778999998876544321 1
Q ss_pred cccCCCHHHHHHHHHHHHhHhCCCcccEEEeecCCCCCCccccccCCCChhHHHHHHHHHHHcCccceEecCCCCHHHHH
Q 018374 102 VIVKGTPEYVRSCCEASLKRLGVDYIDLYYQHRVDPSVPIEDTVCDSLPTSLNIGELKMLVVEGKIKYIGLSEASPDTIR 181 (357)
Q Consensus 102 ~~~~~~~~~i~~~v~~sL~~Lg~d~iDl~~lH~pd~~~~~~~~~~~~~~~~~~~~aL~~L~~~G~ir~iGvS~~~~~~l~ 181 (357)
...+.+++.|++ |+.+.|+|.+- ..+++. ++..++.+++|+..+||+-.--.+.++
T Consensus 184 l~vEvd~~ri~k-------R~~~g~ld~~~-------~~ldea----------~~~~~ea~~~~~~~SIg~~GN~ad~~~ 239 (546)
T PF01175_consen 184 LIVEVDPSRIEK-------RLEQGYLDEVT-------DDLDEA----------LARAKEARAKKEPLSIGLLGNAADLWE 239 (546)
T ss_dssp EEEES-HHHHHH-------HHHTTSSSEEE-------SSHHHH----------HHHHHHHHHTT--EEEEEES-HHHHHH
T ss_pred EEEEECHHHHHH-------HHhCCCeeEEc-------CCHHHH----------HHHHHHhhccCCeeEEEEeccHHHHHH
Confidence 134556666665 55578888764 234555 999999999999999999998888888
Q ss_pred HHhcc
Q 018374 182 RAHAV 186 (357)
Q Consensus 182 ~~~~~ 186 (357)
++++.
T Consensus 240 ~l~~~ 244 (546)
T PF01175_consen 240 ELVER 244 (546)
T ss_dssp HHHHT
T ss_pred HHHHc
Confidence 88776
No 245
>COG2102 Predicted ATPases of PP-loop superfamily [General function prediction only]
Probab=20.29 E-value=2.2e+02 Score=25.30 Aligned_cols=92 Identities=18% Similarity=0.208 Sum_probs=55.4
Q ss_pred HHHHHHHHHcCccceEecC----CCCHHHHHHHhccCCceEEeccccccccchhhhHHHHHHHhCCceeecccCccccCC
Q 018374 155 IGELKMLVVEGKIKYIGLS----EASPDTIRRAHAVHPITAVQMEWSLLTRDIEEEIIPLCRELGIGIVPYSPLGRGLLG 230 (357)
Q Consensus 155 ~~aL~~L~~~G~ir~iGvS----~~~~~~l~~~~~~~~~~~~q~~~n~~~~~~~~~~~~~~~~~gi~v~a~spl~~G~L~ 230 (357)
.++|+.|+ +..|... .+....++.+-+...+.+. .++=+....+++...-+.|..++.-++-+.|+-.
T Consensus 79 ~~~l~~l~----~d~iv~GaI~s~yqk~rve~lc~~lGl~~~----~PLWg~d~~ell~e~~~~Gf~~~Iv~Vsa~gL~~ 150 (223)
T COG2102 79 KEALRRLK----VDGIVAGAIASEYQKERVERLCEELGLKVY----APLWGRDPEELLEEMVEAGFEAIIVAVSAEGLDE 150 (223)
T ss_pred HHHHHhCc----ccEEEEchhhhHHHHHHHHHHHHHhCCEEe----ecccCCCHHHHHHHHHHcCCeEEEEEEeccCCCh
Confidence 55555555 5555543 3444556666555444332 3333322357888888888888877777766521
Q ss_pred ---CCCcCCCCCCCcccccCCCCCCCcchhhHHHHHHHHHHHHhcCCChH
Q 018374 231 ---GKAVVESLPANSFLISHPRFTGENLGKNKQIYARVENLAKRNKCTPA 277 (357)
Q Consensus 231 ---g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ia~~~g~s~~ 277 (357)
|+ .-..+.++.+..+.++||+.|+
T Consensus 151 ~~lGr-----------------------~i~~~~~e~l~~l~~~ygi~~~ 177 (223)
T COG2102 151 SWLGR-----------------------RIDREFLEELKSLNRRYGIHPA 177 (223)
T ss_pred HHhCC-----------------------ccCHHHHHHHHHHHHhcCCCcc
Confidence 11 0113567889999999998764
No 246
>KOG2400 consensus Nuclear protein ZAP [Defense mechanisms]
Probab=20.20 E-value=30 Score=23.94 Aligned_cols=42 Identities=12% Similarity=0.221 Sum_probs=25.8
Q ss_pred cccEEEeecCCCCCCccccccCCCChhHHHHHHHHHHHcCccceEec
Q 018374 126 YIDLYYQHRVDPSVPIEDTVCDSLPTSLNIGELKMLVVEGKIKYIGL 172 (357)
Q Consensus 126 ~iDl~~lH~pd~~~~~~~~~~~~~~~~~~~~aL~~L~~~G~ir~iGv 172 (357)
-.|.++|..+.+.+..+.- ...--|.-+++-+.+.+.|+||+
T Consensus 9 madylqledwkppttsdng-----kkrvrwadieekrsqkkmraigf 50 (82)
T KOG2400|consen 9 MADYLQLEDWKPPTTSDNG-----KKRVRWADIEEKRSQKKMRAIGF 50 (82)
T ss_pred HHHHHhhhccCCCCcCCCc-----ceeeeehhhHHHHHHHhhhhhee
Confidence 3466667666544332221 00112888899999999999987
No 247
>PRK09490 metH B12-dependent methionine synthase; Provisional
Probab=20.18 E-value=1.3e+03 Score=26.48 Aligned_cols=83 Identities=14% Similarity=0.088 Sum_probs=52.1
Q ss_pred EecCCCCHHHHHHHhccCCceEEeccccccccc-hhhhHHHHHHHhCCceeecccCccccCCCCCcCCCCCCCcccccCC
Q 018374 170 IGLSEASPDTIRRAHAVHPITAVQMEWSLLTRD-IEEEIIPLCRELGIGIVPYSPLGRGLLGGKAVVESLPANSFLISHP 248 (357)
Q Consensus 170 iGvS~~~~~~l~~~~~~~~~~~~q~~~n~~~~~-~~~~~~~~~~~~gi~v~a~spl~~G~L~g~~~~~~~~~~~~~~~~~ 248 (357)
|-+-+..++.++..++..+=..+-...|....+ ...++++.|+++|..++.+.-=..|.
T Consensus 434 lsIDS~~~~ViEaaLk~~~G~~IINSIs~~~~~~~~~~~~~l~~kyga~vV~m~~de~G~-------------------- 493 (1229)
T PRK09490 434 IMIDSSKWEVIEAGLKCIQGKGIVNSISLKEGEEKFIEHARLVRRYGAAVVVMAFDEQGQ-------------------- 493 (1229)
T ss_pred EEEeCCcHHHHHHHHhhcCCCCEEEeCCCCCCCccHHHHHHHHHHhCCCEEEEecCCCCC--------------------
Confidence 677788999999999873223344455554321 12478999999999999874322221
Q ss_pred CCCCCcchhhHHHHHHHHHHHH-hcCCC
Q 018374 249 RFTGENLGKNKQIYARVENLAK-RNKCT 275 (357)
Q Consensus 249 ~~~~~~~~~~~~~~~~l~~ia~-~~g~s 275 (357)
+...+...+..+++-+++. ++|++
T Consensus 494 ---~~t~e~r~~ia~r~~~~~~~~~Gi~ 518 (1229)
T PRK09490 494 ---ADTRERKIEICKRAYDILTEEVGFP 518 (1229)
T ss_pred ---CCCHHHHHHHHHHHHHHHHHHcCCC
Confidence 2223455566666666664 47764
Done!