Your job contains 1 sequence.
>018376
MVGDGHVEKRSKDKKKKKKQKRGGGKKKMTAEQSLAFNSVTEWVYLDQSHSSSSSEDDFG
VHQILNRAVDNNVVFELHSHSNFSDGYLSPSKLVERAHCNGVKVLALTDHDTMSGIPEAI
ETARRFGMKIIPGVEISTIFCQRGSESEEPVHILAYYSSCGPSKYEELENFLANIRDGRF
LRAKDMILKLNKLKLPLKWEHVAKIAGKGVAPGRLHVARAMVEAGHVENLKQAFARYLYD
GGPAYSTGSEPLAEVAVQLIHRTGGLAVLAHPWALKNPAAIIRKLKDVGLHGLEVYRSDG
KLVDVNFLEKIDNFLLLLCLRQISNCDCALYPYPWQLLYDFLGLLASVLSNSPDFII
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 018376
(357 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2043738 - symbol:AT2G13840 species:3702 "Arabi... 940 1.8e-94 1
UNIPROTKB|Q3Z644 - symbol:DET1610 "PHP domain N-terminal ... 360 5.2e-33 1
TIGR_CMR|DET_1610 - symbol:DET_1610 "PHP domain N-termina... 360 5.2e-33 1
UNIPROTKB|Q3A9Z4 - symbol:CHY_2227 "PHP domain protein" s... 336 1.8e-30 1
TIGR_CMR|CHY_2227 - symbol:CHY_2227 "PHP domain protein" ... 336 1.8e-30 1
UNIPROTKB|Q8ECV6 - symbol:trpH "PHP family metal-dependen... 305 3.5e-27 1
TIGR_CMR|SO_3017 - symbol:SO_3017 "TrpH family protein" s... 305 3.5e-27 1
UNIPROTKB|Q74D71 - symbol:GSU1448 "Metal-dependent phosph... 278 2.6e-24 1
TIGR_CMR|GSU_1448 - symbol:GSU_1448 "PHP domain protein" ... 278 2.6e-24 1
UNIPROTKB|Q60BV5 - symbol:MCA0359 "PHP domain protein" sp... 272 1.1e-23 1
UNIPROTKB|Q885M1 - symbol:PSPTO_1810 "PHP domain protein"... 272 1.1e-23 1
UNIPROTKB|P77766 - symbol:yciV "conserved protein" specie... 256 5.5e-22 1
UNIPROTKB|Q47YC5 - symbol:CPS_3521 "PHP domain protein" s... 254 9.0e-22 1
TIGR_CMR|CPS_3521 - symbol:CPS_3521 "PHP domain protein" ... 254 9.0e-22 1
UNIPROTKB|Q9KSS9 - symbol:VC_1177 "Putative uncharacteriz... 231 2.5e-19 1
TIGR_CMR|VC_1177 - symbol:VC_1177 "conserved hypothetical... 231 2.5e-19 1
DICTYBASE|DDB_G0288779 - symbol:DDB_G0288779 species:4468... 117 3.0e-06 2
UNIPROTKB|O50399 - symbol:dnaE2 "Error-prone DNA polymera... 136 1.0e-05 1
DICTYBASE|DDB_G0293864 - symbol:DDB_G0293864 species:4468... 111 2.5e-05 2
TIGR_CMR|DET_1464 - symbol:DET_1464 "DNA polymerase III, ... 121 0.00052 1
>TAIR|locus:2043738 [details] [associations]
symbol:AT2G13840 species:3702 "Arabidopsis thaliana"
[GO:0003677 "DNA binding" evidence=IEA;ISS] [GO:0003824 "catalytic
activity" evidence=IEA] [GO:0003887 "DNA-directed DNA polymerase
activity" evidence=IEA;ISS] [GO:0005737 "cytoplasm" evidence=ISM]
[GO:0006260 "DNA replication" evidence=IEA;ISS] InterPro:IPR003141
InterPro:IPR004013 InterPro:IPR016195 Pfam:PF02811 SMART:SM00481
EMBL:CP002685 GO:GO:0003677 GO:GO:0006260 EMBL:AC006218
EMBL:AC006436 GO:GO:0003887 SUPFAM:SSF89550 KO:K07053
IPI:IPI00546711 PIR:C84511 RefSeq:NP_565360.1 UniGene:At.26505
ProteinModelPortal:Q9ZQI9 SMR:Q9ZQI9 STRING:Q9ZQI9
EnsemblPlants:AT2G13840.1 GeneID:815867 KEGG:ath:AT2G13840
TAIR:At2g13840 HOGENOM:HOG000239493 InParanoid:Q9ZQI9 OMA:MEYIAIC
PhylomeDB:Q9ZQI9 ProtClustDB:CLSN2688093 ArrayExpress:Q9ZQI9
Genevestigator:Q9ZQI9 Uniprot:Q9ZQI9
Length = 434
Score = 940 (336.0 bits), Expect = 1.8e-94, P = 1.8e-94
Identities = 184/292 (63%), Positives = 225/292 (77%)
Query: 29 MTAEQSLAFNSVTEWVYLDQXXXXXXXEDDFGVHQILNRA---VDNNVVFELHSHSNFSD 85
MT EQS AF S+T+W+ L DDF V+ +N VVFELHSHSN SD
Sbjct: 22 MTTEQSEAFKSITDWLILGSSPSLSSSSDDFAVN--INSGSLRCGEKVVFELHSHSNRSD 79
Query: 86 GYLSPSKLVERAHCNGVKVLALTDHDTMSGIPEAIETARRFGMKIIPGVEISTIFCQRGS 145
G+LSPSK+VERA+ NGVKVL+LTDHDTM+G+PEA+E RRFG+KIIPG+EIST+F R S
Sbjct: 80 GFLSPSKVVERAYNNGVKVLSLTDHDTMAGVPEAVEAGRRFGIKIIPGIEISTLFGLRDS 139
Query: 146 ESEEPVHILAYYSSCGPSKYEELENFLANIRDGRFLRAKDMIXXXXXXXXXXXWEHVAKI 205
SEEPVHILAYY + GP+ Y+ELE+FL IRDGRF+R ++M+ WEHV +I
Sbjct: 140 GSEEPVHILAYYGTSGPALYDELEDFLVKIRDGRFVRGREMVLKLNKLKIPLKWEHVTRI 199
Query: 206 AGKGVAPGRLHVARAMVEAGHVENLKQAFARYLYDGGPAYSTGSEPLAEVAVQLIHRTGG 265
AGK VAPGR+HVARA++EAG+VENL+QAF +YL+DGGPAY+TG+EP+AE AV+LI +TGG
Sbjct: 200 AGKDVAPGRMHVARALLEAGYVENLRQAFTKYLHDGGPAYATGTEPMAEEAVKLICKTGG 259
Query: 266 LAVLAHPWALKNPAAIIRKLKDVGLHGLEVYRSDGKLVDVNFLEKIDNFLLL 317
+AVLAHPWALKN IIR+LKD GLHG+EVYRSDGKL +V F E D + LL
Sbjct: 260 VAVLAHPWALKNHVGIIRRLKDAGLHGVEVYRSDGKL-EV-FSELADTYNLL 309
>UNIPROTKB|Q3Z644 [details] [associations]
symbol:DET1610 "PHP domain N-terminal region family
protein" species:243164 "Dehalococcoides ethenogenes 195"
[GO:0003674 "molecular_function" evidence=ND] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR003141
InterPro:IPR004013 InterPro:IPR016195 Pfam:PF02811 SMART:SM00481
GO:GO:0003677 GO:GO:0006260 EMBL:CP000027 GenomeReviews:CP000027_GR
GO:GO:0003887 SUPFAM:SSF89550 eggNOG:COG0613 KO:K07053 OMA:MEYIAIC
HOGENOM:HOG000248105 RefSeq:YP_182305.1 ProteinModelPortal:Q3Z644
STRING:Q3Z644 GeneID:3229067 KEGG:det:DET1610 PATRIC:21610232
ProtClustDB:CLSK836789 BioCyc:DETH243164:GJNF-1611-MONOMER
Uniprot:Q3Z644
Length = 287
Score = 360 (131.8 bits), Expect = 5.2e-33, P = 5.2e-33
Identities = 82/224 (36%), Positives = 129/224 (57%)
Query: 76 ELHSHSNFSDGYLSPSKLVERAHCNGVKVLALTDHDTMSGIPEAIETARRFG-MKIIPGV 134
+LH H+ SDG SP +V +A ++ +A+ DHD + G+ AIE RR+ +++IPGV
Sbjct: 6 DLHIHTTVSDGVHSPENIVAKAAKVNMEYIAICDHDNLGGVGIAIEATRRYPKLRVIPGV 65
Query: 135 EISTIFCQRGSESEEPVHILAYYSSCGPSKYEE--LENFLANIRDGRFLRAKDMIXXXXX 192
EIST + G + VHIL Y+ Y++ L + L +R R RA+DM+
Sbjct: 66 EISTDYS--GGD----VHILGYFVD-----YQDPVLNDTLTEMRRSRVERARDMVIKLNG 114
Query: 193 XXXXXXWEHVAKIAGKGVAPGRLHVARAMVEAGHVENLKQAFARYLYDGGPAYSTGSEPL 252
W+ V++IAG+G GR H+A AM+E G+++N+ +AF +Y+ GGPAY +
Sbjct: 115 LGMEISWQRVSEIAGEGTV-GRPHIATAMLEKGYIQNMGEAFDKYIGRGGPAYVERIKMN 173
Query: 253 AEVAVQLIHRTGGLAVLAHPWALKNPAAIIRKLKDVGLHGLEVY 296
E AV+L+ GG+ V+AHP + + ++ +L GL GLE +
Sbjct: 174 PEEAVRLVLSCGGIPVMAHPLTIMDHEPMVERLVQAGLMGLECH 217
>TIGR_CMR|DET_1610 [details] [associations]
symbol:DET_1610 "PHP domain N-terminal region family
protein" species:243164 "Dehalococcoides ethenogenes 195"
[GO:0003674 "molecular_function" evidence=ND] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR003141
InterPro:IPR004013 InterPro:IPR016195 Pfam:PF02811 SMART:SM00481
GO:GO:0003677 GO:GO:0006260 EMBL:CP000027 GenomeReviews:CP000027_GR
GO:GO:0003887 SUPFAM:SSF89550 eggNOG:COG0613 KO:K07053 OMA:MEYIAIC
HOGENOM:HOG000248105 RefSeq:YP_182305.1 ProteinModelPortal:Q3Z644
STRING:Q3Z644 GeneID:3229067 KEGG:det:DET1610 PATRIC:21610232
ProtClustDB:CLSK836789 BioCyc:DETH243164:GJNF-1611-MONOMER
Uniprot:Q3Z644
Length = 287
Score = 360 (131.8 bits), Expect = 5.2e-33, P = 5.2e-33
Identities = 82/224 (36%), Positives = 129/224 (57%)
Query: 76 ELHSHSNFSDGYLSPSKLVERAHCNGVKVLALTDHDTMSGIPEAIETARRFG-MKIIPGV 134
+LH H+ SDG SP +V +A ++ +A+ DHD + G+ AIE RR+ +++IPGV
Sbjct: 6 DLHIHTTVSDGVHSPENIVAKAAKVNMEYIAICDHDNLGGVGIAIEATRRYPKLRVIPGV 65
Query: 135 EISTIFCQRGSESEEPVHILAYYSSCGPSKYEE--LENFLANIRDGRFLRAKDMIXXXXX 192
EIST + G + VHIL Y+ Y++ L + L +R R RA+DM+
Sbjct: 66 EISTDYS--GGD----VHILGYFVD-----YQDPVLNDTLTEMRRSRVERARDMVIKLNG 114
Query: 193 XXXXXXWEHVAKIAGKGVAPGRLHVARAMVEAGHVENLKQAFARYLYDGGPAYSTGSEPL 252
W+ V++IAG+G GR H+A AM+E G+++N+ +AF +Y+ GGPAY +
Sbjct: 115 LGMEISWQRVSEIAGEGTV-GRPHIATAMLEKGYIQNMGEAFDKYIGRGGPAYVERIKMN 173
Query: 253 AEVAVQLIHRTGGLAVLAHPWALKNPAAIIRKLKDVGLHGLEVY 296
E AV+L+ GG+ V+AHP + + ++ +L GL GLE +
Sbjct: 174 PEEAVRLVLSCGGIPVMAHPLTIMDHEPMVERLVQAGLMGLECH 217
>UNIPROTKB|Q3A9Z4 [details] [associations]
symbol:CHY_2227 "PHP domain protein" species:246194
"Carboxydothermus hydrogenoformans Z-2901" [GO:0003674
"molecular_function" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR003141 InterPro:IPR004013
InterPro:IPR016195 Pfam:PF02811 SMART:SM00481 GO:GO:0003677
EMBL:CP000141 GenomeReviews:CP000141_GR GO:GO:0006260 GO:GO:0003887
SUPFAM:SSF89550 eggNOG:COG0613 KO:K07053 RefSeq:YP_361040.1
ProteinModelPortal:Q3A9Z4 STRING:Q3A9Z4 GeneID:3726733
KEGG:chy:CHY_2227 PATRIC:21277521 HOGENOM:HOG000248105 OMA:TRAHYAR
ProtClustDB:CLSK2772296 BioCyc:CHYD246194:GJCN-2226-MONOMER
Uniprot:Q3A9Z4
Length = 278
Score = 336 (123.3 bits), Expect = 1.8e-30, P = 1.8e-30
Identities = 79/227 (34%), Positives = 124/227 (54%)
Query: 74 VFELHSHSNFSDGYLSPSKLVERAHCNGVKVLALTDHDTMSGIPEAIETARRFGMKIIPG 133
+ +LH+H+ SDG +P LV A G+K+LA+TDHD+ +G+ EA+E +++G+K+IPG
Sbjct: 1 MIDLHTHTTASDGTCTPEALVRLAQKEGLKILAVTDHDSAAGVIEAVEAGKKYGVKVIPG 60
Query: 134 VEISTIFCQRGSESEEPVHILAYYSSCGPSKYEELENFLANIRDGRFLRAKDMIXXXXXX 193
VEIS +F E E +HIL Y + E L +++ R R M+
Sbjct: 61 VEISVVF-----EPTE-MHILGYGIDVNDPIFAEA---LTKLKENRERRNPKMLAKLREL 111
Query: 194 XXXXXWEHVAKIAGKGVAPGRLHVARAMVEAGHVENLKQAFARYLYDGGPAYSTGSEPLA 253
E V AG + GR H+AR +++ G+V ++++AF++YL G PAY +
Sbjct: 112 GFEITLEEVIAEAGGDIV-GRPHMARVLLKKGYVSSIEEAFSKYLGKGCPAYVPKEKLTP 170
Query: 254 EVAVQLIHRTGGLAVLAHPWALKNP----AAIIRKLKDVGLHGLEVY 296
+ A+ +I + GGL LAHP L+ I+ +L GL G+E Y
Sbjct: 171 KQAINIIKKAGGLTFLAHPVYLEKDDEGLKKILEELISYGLDGIEAY 217
>TIGR_CMR|CHY_2227 [details] [associations]
symbol:CHY_2227 "PHP domain protein" species:246194
"Carboxydothermus hydrogenoformans Z-2901" [GO:0003674
"molecular_function" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR003141 InterPro:IPR004013
InterPro:IPR016195 Pfam:PF02811 SMART:SM00481 GO:GO:0003677
EMBL:CP000141 GenomeReviews:CP000141_GR GO:GO:0006260 GO:GO:0003887
SUPFAM:SSF89550 eggNOG:COG0613 KO:K07053 RefSeq:YP_361040.1
ProteinModelPortal:Q3A9Z4 STRING:Q3A9Z4 GeneID:3726733
KEGG:chy:CHY_2227 PATRIC:21277521 HOGENOM:HOG000248105 OMA:TRAHYAR
ProtClustDB:CLSK2772296 BioCyc:CHYD246194:GJCN-2226-MONOMER
Uniprot:Q3A9Z4
Length = 278
Score = 336 (123.3 bits), Expect = 1.8e-30, P = 1.8e-30
Identities = 79/227 (34%), Positives = 124/227 (54%)
Query: 74 VFELHSHSNFSDGYLSPSKLVERAHCNGVKVLALTDHDTMSGIPEAIETARRFGMKIIPG 133
+ +LH+H+ SDG +P LV A G+K+LA+TDHD+ +G+ EA+E +++G+K+IPG
Sbjct: 1 MIDLHTHTTASDGTCTPEALVRLAQKEGLKILAVTDHDSAAGVIEAVEAGKKYGVKVIPG 60
Query: 134 VEISTIFCQRGSESEEPVHILAYYSSCGPSKYEELENFLANIRDGRFLRAKDMIXXXXXX 193
VEIS +F E E +HIL Y + E L +++ R R M+
Sbjct: 61 VEISVVF-----EPTE-MHILGYGIDVNDPIFAEA---LTKLKENRERRNPKMLAKLREL 111
Query: 194 XXXXXWEHVAKIAGKGVAPGRLHVARAMVEAGHVENLKQAFARYLYDGGPAYSTGSEPLA 253
E V AG + GR H+AR +++ G+V ++++AF++YL G PAY +
Sbjct: 112 GFEITLEEVIAEAGGDIV-GRPHMARVLLKKGYVSSIEEAFSKYLGKGCPAYVPKEKLTP 170
Query: 254 EVAVQLIHRTGGLAVLAHPWALKNP----AAIIRKLKDVGLHGLEVY 296
+ A+ +I + GGL LAHP L+ I+ +L GL G+E Y
Sbjct: 171 KQAINIIKKAGGLTFLAHPVYLEKDDEGLKKILEELISYGLDGIEAY 217
>UNIPROTKB|Q8ECV6 [details] [associations]
symbol:trpH "PHP family metal-dependent phosphoesterases
TrpH" species:211586 "Shewanella oneidensis MR-1" [GO:0008150
"biological_process" evidence=ND] InterPro:IPR003141
InterPro:IPR004013 InterPro:IPR016195 Pfam:PF02811 SMART:SM00481
GO:GO:0003677 GO:GO:0006260 EMBL:AE014299 GenomeReviews:AE014299_GR
GO:GO:0003887 SUPFAM:SSF89550 HOGENOM:HOG000248104 KO:K07053
OMA:TRAHYAR RefSeq:NP_718585.1 ProteinModelPortal:Q8ECV6
GeneID:1170705 KEGG:son:SO_3017 PATRIC:23525670
ProtClustDB:CLSK906959 Uniprot:Q8ECV6
Length = 286
Score = 305 (112.4 bits), Expect = 3.5e-27, P = 3.5e-27
Identities = 83/230 (36%), Positives = 125/230 (54%)
Query: 72 NVVFELHSHSNFSDGYLSPSKLVERAHCNGVKVLALTDHDTMSGIPEA--IETARRFGMK 129
+++ +LHSH+ SDG+L+PS+LV RA GV++ A+TDHDT++G+ EA A+ +K
Sbjct: 5 SILADLHSHTTASDGHLTPSELVARALEKGVQLFAITDHDTVAGLSEARAFNQAQAEPLK 64
Query: 130 IIPGVEISTIFCQRGSESEEPVHILAYYSSCGPSKYEELENFLANIRDGRFLRAKDMIXX 189
+I GVEIST R + + +HI+A + EL FLA+ R+ R RA+++
Sbjct: 65 LISGVEIST----RWNSYD--IHIVALNFD---ETHAELLRFLAHQRELREQRAEEIGHR 115
Query: 190 XXXXXXXXXWEHVAKIAGKGVAPGRLHVARAMVEAGHVENLKQAFARYLYDGGPAYSTGS 249
+E K+A G A R H AR + + GH ++ F RYL G Y +
Sbjct: 116 LAKAGIEGAYEGAKKLAA-GAALSRGHYARWLADNGHAVDMPSVFKRYLARGKTGYVPNN 174
Query: 250 EPLAEVAVQLIHRTGGLAVLAHPWALKNPAA----IIRKLKDVGLHGLEV 295
A+++IH GGLAVLAHP K A ++R+ K+ G +EV
Sbjct: 175 WGDMASAIKVIHNAGGLAVLAHPSGYKLSAKWLKRLVREFKEAGGDAMEV 224
>TIGR_CMR|SO_3017 [details] [associations]
symbol:SO_3017 "TrpH family protein" species:211586
"Shewanella oneidensis MR-1" [GO:0008150 "biological_process"
evidence=ND] [GO:0008081 "phosphoric diester hydrolase activity"
evidence=ISS] InterPro:IPR003141 InterPro:IPR004013
InterPro:IPR016195 Pfam:PF02811 SMART:SM00481 GO:GO:0003677
GO:GO:0006260 EMBL:AE014299 GenomeReviews:AE014299_GR GO:GO:0003887
SUPFAM:SSF89550 HOGENOM:HOG000248104 KO:K07053 OMA:TRAHYAR
RefSeq:NP_718585.1 ProteinModelPortal:Q8ECV6 GeneID:1170705
KEGG:son:SO_3017 PATRIC:23525670 ProtClustDB:CLSK906959
Uniprot:Q8ECV6
Length = 286
Score = 305 (112.4 bits), Expect = 3.5e-27, P = 3.5e-27
Identities = 83/230 (36%), Positives = 125/230 (54%)
Query: 72 NVVFELHSHSNFSDGYLSPSKLVERAHCNGVKVLALTDHDTMSGIPEA--IETARRFGMK 129
+++ +LHSH+ SDG+L+PS+LV RA GV++ A+TDHDT++G+ EA A+ +K
Sbjct: 5 SILADLHSHTTASDGHLTPSELVARALEKGVQLFAITDHDTVAGLSEARAFNQAQAEPLK 64
Query: 130 IIPGVEISTIFCQRGSESEEPVHILAYYSSCGPSKYEELENFLANIRDGRFLRAKDMIXX 189
+I GVEIST R + + +HI+A + EL FLA+ R+ R RA+++
Sbjct: 65 LISGVEIST----RWNSYD--IHIVALNFD---ETHAELLRFLAHQRELREQRAEEIGHR 115
Query: 190 XXXXXXXXXWEHVAKIAGKGVAPGRLHVARAMVEAGHVENLKQAFARYLYDGGPAYSTGS 249
+E K+A G A R H AR + + GH ++ F RYL G Y +
Sbjct: 116 LAKAGIEGAYEGAKKLAA-GAALSRGHYARWLADNGHAVDMPSVFKRYLARGKTGYVPNN 174
Query: 250 EPLAEVAVQLIHRTGGLAVLAHPWALKNPAA----IIRKLKDVGLHGLEV 295
A+++IH GGLAVLAHP K A ++R+ K+ G +EV
Sbjct: 175 WGDMASAIKVIHNAGGLAVLAHPSGYKLSAKWLKRLVREFKEAGGDAMEV 224
>UNIPROTKB|Q74D71 [details] [associations]
symbol:GSU1448 "Metal-dependent phosphoesterase, PHP
family" species:243231 "Geobacter sulfurreducens PCA" [GO:0003674
"molecular_function" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR003141 InterPro:IPR004013
InterPro:IPR016195 Pfam:PF02811 SMART:SM00481 GO:GO:0003677
GO:GO:0006260 EMBL:AE017180 GenomeReviews:AE017180_GR GO:GO:0003887
SUPFAM:SSF89550 KO:K07053 HOGENOM:HOG000248105 RefSeq:NP_952499.1
ProteinModelPortal:Q74D71 DNASU:2687782 GeneID:2687782
KEGG:gsu:GSU1448 PATRIC:22025739 OMA:GVPVTWE ProtClustDB:CLSK828358
BioCyc:GSUL243231:GH27-1427-MONOMER Uniprot:Q74D71
Length = 288
Score = 278 (102.9 bits), Expect = 2.6e-24, P = 2.6e-24
Identities = 84/255 (32%), Positives = 130/255 (50%)
Query: 74 VFELHSHSNFSDGYLSPSKLVERAHCNGVKVLALTDHDTMSGIPEAIETARRFGMKIIPG 133
+ +LH HS SDG L+P+ LV A G+ LA+ DHD + GI EA+ R G+ +IP
Sbjct: 3 LIDLHVHSYHSDGVLAPAVLVAMAAERGLASLAIADHDAVDGIDEAVAEGVRLGVDVIPA 62
Query: 134 VEISTIFCQRGSESEEPVHILAY-YSSCGPSKYEELENFLANIRDGRFLRAKDMIXXXXX 192
VE+S + G S+ +HIL Y P+ ++L F + RD R + I
Sbjct: 63 VELSV---ELGRFSD--LHILGYCIDHHDPAFRDKLAGF-RSARDNRGKAILEKINRRLL 116
Query: 193 XXXXX--XWEHVAKIAGKGVAPGRLHVARAMVEAGHVENLKQAFARYLYDGG-PA-YSTG 248
++ V +AG V GR H+ R +V+ G+ +++ AF RYL P Y
Sbjct: 117 HSRKAPLSYDEVLSMAGGAV--GRPHIGRVLVDNGYARDMEDAFRRYLIPCNVPKRYMPA 174
Query: 249 SEPLAEVAVQLIHRTGGLAVLAHPWALKNPAA----IIRKLKDVGLHGLEVYRSDGKLVD 304
E +AE I R GG++VLAHP + + ++ +L +GL GLEV+ + D
Sbjct: 175 GEAIAE-----IRRIGGVSVLAHPPTITDDRRRLRQVVEQLAQLGLDGLEVFNNLCFKDD 229
Query: 305 VNFLEKI-DNFLLLL 318
+ +LE++ + F LL+
Sbjct: 230 MLYLERLAEEFGLLM 244
>TIGR_CMR|GSU_1448 [details] [associations]
symbol:GSU_1448 "PHP domain protein" species:243231
"Geobacter sulfurreducens PCA" [GO:0003674 "molecular_function"
evidence=ND] [GO:0008150 "biological_process" evidence=ND]
InterPro:IPR003141 InterPro:IPR004013 InterPro:IPR016195
Pfam:PF02811 SMART:SM00481 GO:GO:0003677 GO:GO:0006260
EMBL:AE017180 GenomeReviews:AE017180_GR GO:GO:0003887
SUPFAM:SSF89550 KO:K07053 HOGENOM:HOG000248105 RefSeq:NP_952499.1
ProteinModelPortal:Q74D71 DNASU:2687782 GeneID:2687782
KEGG:gsu:GSU1448 PATRIC:22025739 OMA:GVPVTWE ProtClustDB:CLSK828358
BioCyc:GSUL243231:GH27-1427-MONOMER Uniprot:Q74D71
Length = 288
Score = 278 (102.9 bits), Expect = 2.6e-24, P = 2.6e-24
Identities = 84/255 (32%), Positives = 130/255 (50%)
Query: 74 VFELHSHSNFSDGYLSPSKLVERAHCNGVKVLALTDHDTMSGIPEAIETARRFGMKIIPG 133
+ +LH HS SDG L+P+ LV A G+ LA+ DHD + GI EA+ R G+ +IP
Sbjct: 3 LIDLHVHSYHSDGVLAPAVLVAMAAERGLASLAIADHDAVDGIDEAVAEGVRLGVDVIPA 62
Query: 134 VEISTIFCQRGSESEEPVHILAY-YSSCGPSKYEELENFLANIRDGRFLRAKDMIXXXXX 192
VE+S + G S+ +HIL Y P+ ++L F + RD R + I
Sbjct: 63 VELSV---ELGRFSD--LHILGYCIDHHDPAFRDKLAGF-RSARDNRGKAILEKINRRLL 116
Query: 193 XXXXX--XWEHVAKIAGKGVAPGRLHVARAMVEAGHVENLKQAFARYLYDGG-PA-YSTG 248
++ V +AG V GR H+ R +V+ G+ +++ AF RYL P Y
Sbjct: 117 HSRKAPLSYDEVLSMAGGAV--GRPHIGRVLVDNGYARDMEDAFRRYLIPCNVPKRYMPA 174
Query: 249 SEPLAEVAVQLIHRTGGLAVLAHPWALKNPAA----IIRKLKDVGLHGLEVYRSDGKLVD 304
E +AE I R GG++VLAHP + + ++ +L +GL GLEV+ + D
Sbjct: 175 GEAIAE-----IRRIGGVSVLAHPPTITDDRRRLRQVVEQLAQLGLDGLEVFNNLCFKDD 229
Query: 305 VNFLEKI-DNFLLLL 318
+ +LE++ + F LL+
Sbjct: 230 MLYLERLAEEFGLLM 244
>UNIPROTKB|Q60BV5 [details] [associations]
symbol:MCA0359 "PHP domain protein" species:243233
"Methylococcus capsulatus str. Bath" [GO:0003674
"molecular_function" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR003141 InterPro:IPR004013
InterPro:IPR016195 Pfam:PF02811 SMART:SM00481 GO:GO:0003677
GO:GO:0006260 EMBL:AE017282 GenomeReviews:AE017282_GR GO:GO:0003887
SUPFAM:SSF89550 HOGENOM:HOG000248104 KO:K07053 OMA:TRAHYAR
RefSeq:YP_112891.1 ProteinModelPortal:Q60BV5 GeneID:3104707
KEGG:mca:MCA0359 PATRIC:22604461 Uniprot:Q60BV5
Length = 277
Score = 272 (100.8 bits), Expect = 1.1e-23, P = 1.1e-23
Identities = 76/236 (32%), Positives = 117/236 (49%)
Query: 74 VFELHSHSNFSDGYLSPSKLVERAHCNGVKVLALTDHDTMSGIPEAIETARRFGMKIIPG 133
+++LH+HS SDG LSP++LV A G++ LALTDHD+++G+ EA A G+ +IPG
Sbjct: 1 MYDLHAHSTASDGTLSPTELVRAATAGGIRTLALTDHDSVAGLKEAGAAAAEAGLCLIPG 60
Query: 134 VEISTIFCQRGSESEEPVHILAYYSSCGPSKYEELENFLANIRDGRFLRAKDMIXXXXXX 193
VE+S + ES +H++ + P + L + ++ RF RA++M
Sbjct: 61 VELSVTW-----ESRT-IHVVGL--NIVPD-HPGLNQGMRRLQAVRFERAQEMDRRLTKK 111
Query: 194 XXXXXWEHVAKIAGKGVAPGRLHVARAMVEAGHVENLKQAFARYLYDGGPAYSTGSEPLA 253
E +AG G+ R H ARA+V+ G ++ F ++L G P +
Sbjct: 112 GIPGTLEIAVGLAGAGMVT-RTHFARALVQLGQAATVRDVFDKFLTQGKPGHVPTVWAEM 170
Query: 254 EVAVQLIHRTGGLAVLAHPWALKNPAAIIRKL----KDVGLHGLEVYRSDGKLVDV 305
AV I GG+AVLAHP K + I +L K G +EV + D+
Sbjct: 171 TAAVGWIIEAGGVAVLAHPQRYKMTGSWIGRLAGDFKAAGGEAIEVVSGNATSSDI 226
>UNIPROTKB|Q885M1 [details] [associations]
symbol:PSPTO_1810 "PHP domain protein" species:223283
"Pseudomonas syringae pv. tomato str. DC3000" [GO:0003674
"molecular_function" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR003141 InterPro:IPR004013
InterPro:IPR016195 Pfam:PF02811 SMART:SM00481 GO:GO:0003677
GO:GO:0006260 EMBL:AE016853 GenomeReviews:AE016853_GR GO:GO:0003887
SUPFAM:SSF89550 eggNOG:COG0613 HOGENOM:HOG000248104 KO:K07053
OMA:TRAHYAR RefSeq:NP_791635.1 ProteinModelPortal:Q885M1
GeneID:1183451 KEGG:pst:PSPTO_1810 PATRIC:19994884
ProtClustDB:CLSK867810 BioCyc:PSYR223283:GJIX-1845-MONOMER
Uniprot:Q885M1
Length = 287
Score = 272 (100.8 bits), Expect = 1.1e-23, P = 1.1e-23
Identities = 80/229 (34%), Positives = 112/229 (48%)
Query: 76 ELHSHSNFSDGYLSPSKLVERAHCNGVKVLALTDHDTMSGIPEAIETARRFGMKIIPGVE 135
+LH HS SDG LSP+ LV RAH GV+VL+LTDHDT+ G+ EA A GM+++ GVE
Sbjct: 4 DLHCHSTASDGALSPTALVARAHEYGVRVLSLTDHDTLEGLEEARTAAHSLGMQLVNGVE 63
Query: 136 ISTIFCQRGSESEEPVHILAY-YSSCGPSKYEELENFLANIRDGRFLRAKDMIXXXXXXX 194
+S C G + +H+L Y + + P+ L +A + +GR+LRA+++
Sbjct: 64 LS---CTWGGAT---IHVLGYGFDTQAPA----LTEAIARLHEGRWLRAEEISRKLAIKG 113
Query: 195 XXXXWEHVAKI----AGKGVAPGRLHVARAMVEAGHVENLKQAFARYLYDGGPAYSTGSE 250
E I G AP R H A MV AG V++ +AF ++L G
Sbjct: 114 MPGALEGARAIQQALGDSGNAPARPHFADFMVRAGFVKDRAEAFRKWLGAGKLGDVKQHW 173
Query: 251 PLAEVAVQLIHRTGGLAVLAHPWALKNPAAIIRKLK----DVGLHGLEV 295
P E V + +G LAHP + RKL G H +EV
Sbjct: 174 PTLEDTVATLRASGAWVSLAHPSHYDFTRSKRRKLVGDFVQAGGHAIEV 222
>UNIPROTKB|P77766 [details] [associations]
symbol:yciV "conserved protein" species:83333 "Escherichia
coli K-12" [GO:0006260 "DNA replication" evidence=IEA] [GO:0003887
"DNA-directed DNA polymerase activity" evidence=IEA] [GO:0003824
"catalytic activity" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] InterPro:IPR003141 InterPro:IPR004013
InterPro:IPR016195 Pfam:PF02811 SMART:SM00481 EMBL:U00096
EMBL:AP009048 GenomeReviews:AP009048_GR GenomeReviews:U00096_GR
GO:GO:0003677 GO:GO:0006260 GO:GO:0003887 SUPFAM:SSF89550
PIR:E64874 RefSeq:NP_415782.1 RefSeq:YP_489534.1
ProteinModelPortal:P77766 SMR:P77766 IntAct:P77766 PRIDE:P77766
EnsemblBacteria:EBESCT00000001903 EnsemblBacteria:EBESCT00000017316
GeneID:12931131 GeneID:945857 KEGG:ecj:Y75_p1240 KEGG:eco:b1266
PATRIC:32117790 EchoBASE:EB4005 EcoGene:EG14257 eggNOG:COG0613
HOGENOM:HOG000248104 KO:K07053 OMA:QAWEQPQ ProtClustDB:CLSK880131
BioCyc:EcoCyc:G6634-MONOMER BioCyc:ECOL316407:JW1258-MONOMER
Genevestigator:P77766 Uniprot:P77766
Length = 293
Score = 256 (95.2 bits), Expect = 5.5e-22, P = 5.5e-22
Identities = 77/220 (35%), Positives = 109/220 (49%)
Query: 70 DNN--VVFELHSHSNFSDGYLSPSKLVERAHCNGVKVLALTDHDTMSGIPEAIETARRFG 127
D N V+++LHSH+ SDG L+P LV RA V LA+TDHDT + I A E R G
Sbjct: 3 DTNYAVIYDLHSHTTASDGCLTPEALVHRAVEMRVGTLAITDHDTTAAIAPAREEISRSG 62
Query: 128 M--KIIPGVEISTIFCQRGSESEEPVHILAYYSSCGPSKYEELENFLANIRDGRFLRAKD 185
+ +IPGVEIST++ E+ E +HI+ + + FLA + R RA+
Sbjct: 63 LALNLIPGVEISTVW-----ENHE-IHIVGLNIDI---THPLMCEFLAQQTERRNQRAQL 113
Query: 186 MIXXXXXXXXXXXWEHVAKIAGKGVAPGRLHVARAMVEAGHVENLKQAFARYLYDGGPAY 245
+ E ++A +G A R H AR +VE G ++ F +YL G Y
Sbjct: 114 IAERLEKAQIPGALEGAQRLA-QGGAVTRGHFARFLVECGKASSMADVFKKYLARGKTGY 172
Query: 246 STGSEPLAEVAVQLIHRTGGLAVLAHPWALKNPAAIIRKL 285
E A+ +IH +GG AVLAHP A +++L
Sbjct: 173 VPPQWCTIEQAIDVIHHSGGKAVLAHPGRYNLSAKWLKRL 212
>UNIPROTKB|Q47YC5 [details] [associations]
symbol:CPS_3521 "PHP domain protein" species:167879
"Colwellia psychrerythraea 34H" [GO:0003674 "molecular_function"
evidence=ND] [GO:0008150 "biological_process" evidence=ND]
InterPro:IPR003141 InterPro:IPR004013 InterPro:IPR016195
Pfam:PF02811 SMART:SM00481 GO:GO:0003677 GO:GO:0006260
EMBL:CP000083 GenomeReviews:CP000083_GR GO:GO:0003887
SUPFAM:SSF89550 eggNOG:COG0613 HOGENOM:HOG000248104 KO:K07053
OMA:TRAHYAR RefSeq:YP_270195.1 ProteinModelPortal:Q47YC5
STRING:Q47YC5 GeneID:3519891 KEGG:cps:CPS_3521 PATRIC:21469979
BioCyc:CPSY167879:GI48-3549-MONOMER Uniprot:Q47YC5
Length = 301
Score = 254 (94.5 bits), Expect = 9.0e-22, P = 9.0e-22
Identities = 79/231 (34%), Positives = 118/231 (51%)
Query: 76 ELHSHSNFSDGYLSPSKLVERAHCNGVKVLALTDHDTMSGIPEA---IETARRFGMKIIP 132
+LHSH+N SDG LSP L++RA + VLA+TDHDT++G+ A IE + +K+I
Sbjct: 25 DLHSHTNCSDGGLSPQTLIDRAANFQIDVLAITDHDTVAGLDIAQKHIED-KNIPLKLID 83
Query: 133 GVEISTIFCQRGSESEEPVHILAYYSSCGPSKYEELENFLANIRDGRFLRAKDMIXXXXX 192
G+EIST + +G E +HI+ K EL++ + ++ R RA M
Sbjct: 84 GIEISTAW--QGFE----IHIVGLNID---KKNSELKSLIEQQQEAREQRAISMGEKLTK 134
Query: 193 XXXXXXWEHVAKIAGKGVAPGRLHVARAMVEAGHVENLKQAFARYLYDGGP----AYSTG 248
+ +AG+G R H A+ + + GHV ++QAF +Y+ G AY
Sbjct: 135 CGFPTIYTDAKAMAGEGSIT-RAHFAKVLHQQGHVSTMQQAFDKYIGKKGSKGQRAYVKP 193
Query: 249 SEPLAEVAVQLIHRTGGLAVLAHPWALKNPAAIIRKL----KDVGLHGLEV 295
+ E A+ IH+ GG AV+AHP A +R+L +V GLEV
Sbjct: 194 NWCSIEEAIVAIHQAGGSAVMAHPIRYDLSAKWLRRLIVHFSEVSGDGLEV 244
>TIGR_CMR|CPS_3521 [details] [associations]
symbol:CPS_3521 "PHP domain protein" species:167879
"Colwellia psychrerythraea 34H" [GO:0003674 "molecular_function"
evidence=ND] [GO:0008150 "biological_process" evidence=ND]
InterPro:IPR003141 InterPro:IPR004013 InterPro:IPR016195
Pfam:PF02811 SMART:SM00481 GO:GO:0003677 GO:GO:0006260
EMBL:CP000083 GenomeReviews:CP000083_GR GO:GO:0003887
SUPFAM:SSF89550 eggNOG:COG0613 HOGENOM:HOG000248104 KO:K07053
OMA:TRAHYAR RefSeq:YP_270195.1 ProteinModelPortal:Q47YC5
STRING:Q47YC5 GeneID:3519891 KEGG:cps:CPS_3521 PATRIC:21469979
BioCyc:CPSY167879:GI48-3549-MONOMER Uniprot:Q47YC5
Length = 301
Score = 254 (94.5 bits), Expect = 9.0e-22, P = 9.0e-22
Identities = 79/231 (34%), Positives = 118/231 (51%)
Query: 76 ELHSHSNFSDGYLSPSKLVERAHCNGVKVLALTDHDTMSGIPEA---IETARRFGMKIIP 132
+LHSH+N SDG LSP L++RA + VLA+TDHDT++G+ A IE + +K+I
Sbjct: 25 DLHSHTNCSDGGLSPQTLIDRAANFQIDVLAITDHDTVAGLDIAQKHIED-KNIPLKLID 83
Query: 133 GVEISTIFCQRGSESEEPVHILAYYSSCGPSKYEELENFLANIRDGRFLRAKDMIXXXXX 192
G+EIST + +G E +HI+ K EL++ + ++ R RA M
Sbjct: 84 GIEISTAW--QGFE----IHIVGLNID---KKNSELKSLIEQQQEAREQRAISMGEKLTK 134
Query: 193 XXXXXXWEHVAKIAGKGVAPGRLHVARAMVEAGHVENLKQAFARYLYDGGP----AYSTG 248
+ +AG+G R H A+ + + GHV ++QAF +Y+ G AY
Sbjct: 135 CGFPTIYTDAKAMAGEGSIT-RAHFAKVLHQQGHVSTMQQAFDKYIGKKGSKGQRAYVKP 193
Query: 249 SEPLAEVAVQLIHRTGGLAVLAHPWALKNPAAIIRKL----KDVGLHGLEV 295
+ E A+ IH+ GG AV+AHP A +R+L +V GLEV
Sbjct: 194 NWCSIEEAIVAIHQAGGSAVMAHPIRYDLSAKWLRRLIVHFSEVSGDGLEV 244
>UNIPROTKB|Q9KSS9 [details] [associations]
symbol:VC_1177 "Putative uncharacterized protein"
species:243277 "Vibrio cholerae O1 biovar El Tor str. N16961"
[GO:0003674 "molecular_function" evidence=ND] [GO:0005575
"cellular_component" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR003141 InterPro:IPR004013
InterPro:IPR016195 Pfam:PF02811 SMART:SM00481 GO:GO:0003677
GO:GO:0006260 EMBL:AE003852 GenomeReviews:AE003852_GR GO:GO:0003887
SUPFAM:SSF89550 KO:K07053 OMA:QAWEQPQ PIR:D82233 RefSeq:NP_230822.1
ProteinModelPortal:Q9KSS9 DNASU:2614610 GeneID:2614610
KEGG:vch:VC1177 PATRIC:20081444 ProtClustDB:CLSK874244
Uniprot:Q9KSS9
Length = 290
Score = 231 (86.4 bits), Expect = 2.5e-19, P = 2.5e-19
Identities = 64/212 (30%), Positives = 106/212 (50%)
Query: 76 ELHSHSNFSDGYLSPSKLVERAHCNGVKVLALTDHDTMSGIPEAIE--TARRFGMKIIPG 133
+LHSH+ SDG + +L++RA + VLA+TDHDT++ + +A +++ ++++ G
Sbjct: 4 DLHSHTTASDGRFTYQQLIDRAVSFEIDVLAITDHDTVAALADARAYIAQQQYPLQLVNG 63
Query: 134 VEISTIFCQRGSESEEPVHILAYYSSCGPSKYEELENFLANIRDGRFLRAKDMIXXXXXX 193
+EIST++ + +HI+ + P+ E L +A + R RA+ +
Sbjct: 64 IEISTVW------QNKDIHIVGL--NIDPNS-EALGQLIARQQQRRVERAELIAHRLQKA 114
Query: 194 XXXXXWEHVAKIAGKGVAPGRLHVARAMVEAGHVENLKQAFARYLYDGGPAYSTGSEPLA 253
E V IA G R H A+ +V+ G+ N++Q F +YL P Y +
Sbjct: 115 TREGVLEEVQHIAD-GAPITRAHFAKWLVDNGYATNMQQVFKKYLTRDNPGYVPPNWCSM 173
Query: 254 EVAVQLIHRTGGLAVLAHPWALKNPAAIIRKL 285
AV IH GG AVLAHP A +++L
Sbjct: 174 SEAVSAIHAAGGQAVLAHPGRYDLTAKWLKRL 205
>TIGR_CMR|VC_1177 [details] [associations]
symbol:VC_1177 "conserved hypothetical protein" species:686
"Vibrio cholerae O1 biovar El Tor" [GO:0003674 "molecular_function"
evidence=ND] [GO:0005575 "cellular_component" evidence=ND]
[GO:0008150 "biological_process" evidence=ND] InterPro:IPR003141
InterPro:IPR004013 InterPro:IPR016195 Pfam:PF02811 SMART:SM00481
GO:GO:0003677 GO:GO:0006260 EMBL:AE003852 GenomeReviews:AE003852_GR
GO:GO:0003887 SUPFAM:SSF89550 KO:K07053 OMA:QAWEQPQ PIR:D82233
RefSeq:NP_230822.1 ProteinModelPortal:Q9KSS9 DNASU:2614610
GeneID:2614610 KEGG:vch:VC1177 PATRIC:20081444
ProtClustDB:CLSK874244 Uniprot:Q9KSS9
Length = 290
Score = 231 (86.4 bits), Expect = 2.5e-19, P = 2.5e-19
Identities = 64/212 (30%), Positives = 106/212 (50%)
Query: 76 ELHSHSNFSDGYLSPSKLVERAHCNGVKVLALTDHDTMSGIPEAIE--TARRFGMKIIPG 133
+LHSH+ SDG + +L++RA + VLA+TDHDT++ + +A +++ ++++ G
Sbjct: 4 DLHSHTTASDGRFTYQQLIDRAVSFEIDVLAITDHDTVAALADARAYIAQQQYPLQLVNG 63
Query: 134 VEISTIFCQRGSESEEPVHILAYYSSCGPSKYEELENFLANIRDGRFLRAKDMIXXXXXX 193
+EIST++ + +HI+ + P+ E L +A + R RA+ +
Sbjct: 64 IEISTVW------QNKDIHIVGL--NIDPNS-EALGQLIARQQQRRVERAELIAHRLQKA 114
Query: 194 XXXXXWEHVAKIAGKGVAPGRLHVARAMVEAGHVENLKQAFARYLYDGGPAYSTGSEPLA 253
E V IA G R H A+ +V+ G+ N++Q F +YL P Y +
Sbjct: 115 TREGVLEEVQHIAD-GAPITRAHFAKWLVDNGYATNMQQVFKKYLTRDNPGYVPPNWCSM 173
Query: 254 EVAVQLIHRTGGLAVLAHPWALKNPAAIIRKL 285
AV IH GG AVLAHP A +++L
Sbjct: 174 SEAVSAIHAAGGQAVLAHPGRYDLTAKWLKRL 205
>DICTYBASE|DDB_G0288779 [details] [associations]
symbol:DDB_G0288779 species:44689 "Dictyostelium
discoideum" [GO:0006260 "DNA replication" evidence=IEA] [GO:0003887
"DNA-directed DNA polymerase activity" evidence=IEA] [GO:0003824
"catalytic activity" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] InterPro:IPR003141 InterPro:IPR004013
InterPro:IPR016195 Pfam:PF02811 SMART:SM00481
dictyBase:DDB_G0288779 GO:GO:0003677 GO:GO:0006260
EMBL:AAFI02000125 GO:GO:0003887 SUPFAM:SSF89550 eggNOG:COG0613
ProtClustDB:CLSZ2429208 RefSeq:XP_636513.1
ProteinModelPortal:Q54IG4 EnsemblProtists:DDB0188100 GeneID:8626798
KEGG:ddi:DDB_G0288779 InParanoid:Q54IG4 OMA:VIPGIEW Uniprot:Q54IG4
Length = 493
Score = 117 (46.2 bits), Expect = 3.0e-06, Sum P(2) = 3.0e-06
Identities = 28/79 (35%), Positives = 47/79 (59%)
Query: 66 NRAVDNNVVFELHSHSNFSDGYLSPSKLVERAHCNGVKVLALTDHDTMSGIPEAIETAR- 124
N+ D NV+ + HSH+ +SDG LSP + ++ NG V+ +TDH+ + G ++ A+
Sbjct: 135 NQWDDVNVLLDTHSHTYYSDGSLSPEENIKWHILNGYNVMFMTDHNQVYGGLVGMKIAQE 194
Query: 125 RFGMKI--IPGVEISTIFC 141
++ KI IPG+E + C
Sbjct: 195 KYSDKILVIPGIEWTNCRC 213
Score = 62 (26.9 bits), Expect = 3.0e-06, Sum P(2) = 3.0e-06
Identities = 17/44 (38%), Positives = 25/44 (56%)
Query: 257 VQLIHRTGGLAVLAH-PWA----LKNPAAIIRKLKDVGLHGLEV 295
+ L+H GGL +L H PW+ L P+ I++ D G+ LEV
Sbjct: 239 IDLVHSKGGLVILNHYPWSSWSGLDQPS--IQQWYDWGIDFLEV 280
>UNIPROTKB|O50399 [details] [associations]
symbol:dnaE2 "Error-prone DNA polymerase" species:1773
"Mycobacterium tuberculosis" [GO:0005618 "cell wall" evidence=IDA]
[GO:0005886 "plasma membrane" evidence=IDA] [GO:0006281 "DNA
repair" evidence=IDA] [GO:0042276 "error-prone translesion
synthesis" evidence=IDA] [GO:0046677 "response to antibiotic"
evidence=IEP] HAMAP:MF_01902 InterPro:IPR003141 InterPro:IPR004013
InterPro:IPR004365 InterPro:IPR004805 InterPro:IPR011708
InterPro:IPR016195 InterPro:IPR023073 Pfam:PF01336 Pfam:PF02811
Pfam:PF07733 SMART:SM00481 GO:GO:0005886 GO:GO:0005737
GO:GO:0005618 EMBL:AE000516 GenomeReviews:AE000516_GR
GenomeReviews:AL123456_GR GO:GO:0003677 GO:GO:0006260 GO:GO:0046677
EMBL:BX842582 GO:GO:0008408 GO:GO:0003887 PIR:A70972
RefSeq:NP_217887.2 RefSeq:NP_338003.2 RefSeq:YP_006516852.1
ProteinModelPortal:O50399 SMR:O50399
EnsemblBacteria:EBMYCT00000000506 EnsemblBacteria:EBMYCT00000071896
GeneID:13318199 GeneID:887259 GeneID:926513 KEGG:mtc:MT3480
KEGG:mtu:Rv3370c KEGG:mtv:RVBD_3370c PATRIC:18129394
TubercuList:Rv3370c eggNOG:COG0587 HOGENOM:HOG000021783 KO:K14162
OMA:VTLEDEH ProtClustDB:PRK05672 GO:GO:0042276 SUPFAM:SSF89550
TIGRFAMs:TIGR00594 Uniprot:O50399
Length = 1098
Score = 136 (52.9 bits), Expect = 1.0e-05, P = 1.0e-05
Identities = 42/119 (35%), Positives = 59/119 (49%)
Query: 60 GVHQILNRA-VDNNVVF-ELHSHSNFS--DGYLSPSKLVERAHCNGVKVLALTDHDTMSG 115
G +Q R V ++V + ELH+HS +S DG +P +LVE A G+ LALTDHD + G
Sbjct: 49 GAYQPPGRERVGSSVAYAELHAHSAYSFLDGASTPEELVEEAARLGLCALALTDHDGLYG 108
Query: 116 IPEAIETARRFGMKIIPGVEISTIFCQRGSESEEP-VHILAYYSSCGPSKYEELENFLA 173
E A ++ + G E+S R + P H+L + GP Y L LA
Sbjct: 109 AVRFAEAAAELDVRTVFGAELSLGATARTERPDPPGPHLLVL--ARGPEGYRRLSRQLA 165
>DICTYBASE|DDB_G0293864 [details] [associations]
symbol:DDB_G0293864 species:44689 "Dictyostelium
discoideum" [GO:0006260 "DNA replication" evidence=IEA] [GO:0003887
"DNA-directed DNA polymerase activity" evidence=IEA] [GO:0003824
"catalytic activity" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] InterPro:IPR003141 InterPro:IPR004013
InterPro:IPR016195 Pfam:PF02811 SMART:SM00481
dictyBase:DDB_G0293864 GO:GO:0003677 GO:GO:0006260
EMBL:AAFI02000223 GO:GO:0003887 SUPFAM:SSF89550 RefSeq:XP_628915.1
ProteinModelPortal:Q54B73 EnsemblProtists:DDB0192166 GeneID:8629456
KEGG:ddi:DDB_G0293864 eggNOG:NOG81474 InParanoid:Q54B73 OMA:SCTEQIV
ProtClustDB:CLSZ2429208 Uniprot:Q54B73
Length = 508
Score = 111 (44.1 bits), Expect = 2.5e-05, Sum P(2) = 2.5e-05
Identities = 23/73 (31%), Positives = 42/73 (57%)
Query: 72 NVVFELHSHSNFSDGYLSPSKLVERAHCNGVKVLALTDHDTMSGIPEAIETA-RRFGMKI 130
N++ + HSH+ +SDG L+P + ++ NG + +TDH+ + G E A +++ KI
Sbjct: 140 NILLDPHSHTTYSDGTLTPEENIKWHISNGFNAMFMTDHNKIEGGLEGQRIAQKKYSSKI 199
Query: 131 --IPGVEISTIFC 141
+PG+E + C
Sbjct: 200 LVVPGIEWTNCRC 212
Score = 60 (26.2 bits), Expect = 2.5e-05, Sum P(2) = 2.5e-05
Identities = 18/60 (30%), Positives = 31/60 (51%)
Query: 245 YSTGSEPLAEVAVQLIHRTGGLAVLAH-PWA----LKNPAAIIRKLKDVGLHGLEVYRSD 299
+ T E + E+ + +H GGL +L H PW+ L P+ + + ++G+ LEV D
Sbjct: 228 FPTNKE-IKEI-IDFVHSQGGLVILNHYPWSYWAGLDQPS--MEEWYEMGIDFLEVVNID 283
>TIGR_CMR|DET_1464 [details] [associations]
symbol:DET_1464 "DNA polymerase III, alpha subunit"
species:243164 "Dehalococcoides ethenogenes 195" [GO:0003887
"DNA-directed DNA polymerase activity" evidence=ISS] [GO:0006260
"DNA replication" evidence=ISS] [GO:0009360 "DNA polymerase III
complex" evidence=ISS] InterPro:IPR003141 InterPro:IPR004013
InterPro:IPR004365 InterPro:IPR004805 InterPro:IPR011708
InterPro:IPR016195 Pfam:PF01336 Pfam:PF02811 Pfam:PF07733
SMART:SM00481 GO:GO:0005737 GO:GO:0003677 GO:GO:0006260
EMBL:CP000027 GenomeReviews:CP000027_GR Gene3D:2.40.50.140
InterPro:IPR012340 GO:GO:0008408 GO:GO:0003887 eggNOG:COG0587
SUPFAM:SSF89550 TIGRFAMs:TIGR00594 KO:K02337 OMA:DFYLEIM
HOGENOM:HOG000021785 RefSeq:YP_182167.1 ProteinModelPortal:Q3Z6I2
STRING:Q3Z6I2 GeneID:3229319 KEGG:det:DET1464 PATRIC:21609954
ProtClustDB:CLSK836931 BioCyc:DETH243164:GJNF-1465-MONOMER
Uniprot:Q3Z6I2
Length = 1170
Score = 121 (47.7 bits), Expect = 0.00052, P = 0.00052
Identities = 30/73 (41%), Positives = 42/73 (57%)
Query: 77 LHSHSNFS--DGYLSPSKLVERAHCNGVKVLALTDHDTMSGIPEAIETARRFGMKIIPGV 134
LH H+ FS DG S+LV RA G++ LA+TDH TM GIP + A+ G+K I G
Sbjct: 5 LHVHTEFSLLDGMCRISQLVARAKELGMEALAITDHGTMHGIPRFYKEAKEAGIKPILGS 64
Query: 135 EISTIFCQRGSES 147
E + R +++
Sbjct: 65 EFYLAYGDRTAKT 77
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.321 0.138 0.419 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 357 319 0.00084 116 3 11 22 0.37 34
33 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 20
No. of states in DFA: 613 (65 KB)
Total size of DFA: 226 KB (2124 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 22.82u 0.13s 22.95t Elapsed: 00:00:01
Total cpu time: 22.82u 0.13s 22.95t Elapsed: 00:00:01
Start: Sat May 11 10:25:21 2013 End: Sat May 11 10:25:22 2013