BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 018376
(357 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2YB1|A Chain A, Structure Of An Amidohydrolase From Chromobacterium
Violaceum (Efi Target Efi-500202) With Bound Mn, Amp And
Phosphate.
pdb|2YB4|A Chain A, Structure Of An Amidohydrolase From Chromobacterium
Violaceum (Efi Target Efi-500202) With Bound So4, No
Metal
Length = 292
Score = 84.7 bits (208), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 74/236 (31%), Positives = 112/236 (47%), Gaps = 13/236 (5%)
Query: 75 FELHSHSNFSDGYLSPSKLVERAHCNGVKVLALTDHDTMSGIPEAIETARRFGMKIIPGV 134
+LH HS SDG L+P+++++RA +LALTDHD G+ EA A R G+ + GV
Sbjct: 4 IDLHFHSRTSDGALTPTEVIDRAAARAPALLALTDHDCTGGLAEAAAAAARRGIPFLNGV 63
Query: 135 EISTIFCQRGSESEEPVHILAYYSSCGPSKYEELENFLANIRDGRFLRAKDMIXXXXXXX 194
E+S S VHI+ P++ L L +IR+GR RA+ M
Sbjct: 64 EVSV------SWGRHTVHIVGL--GIDPAE-PALAAGLKSIREGRLERARQMGASLEAAG 114
Query: 195 XXXXWEHVAKIAGKGVAPGRLHVARAMVEAGHVENLKQAFARYLYDGGPAYSTGSEPLAE 254
++ + R H AR +V++G V++++ F +YL G P Y + E
Sbjct: 115 IAGCFDGAMRWCDNPEMISRTHFARHLVDSGAVKDMRTVFRKYLTPGKPGYVSHQWASLE 174
Query: 255 VAVQLIHRTGGLAVLAHPWALKNPAAIIRKL----KDVGLHGLEVYRSDGKLVDVN 306
AV I GG+AV+AHP +I +L + G G+EV L D++
Sbjct: 175 DAVGWIVGAGGMAVIAHPGRYDMGRTLIERLILDFQAAGGQGIEVASGSHSLDDMH 230
>pdb|3E0F|A Chain A, Crystal Structure Of A Putative Metal-Dependent
Phosphoesterase (Bad_1165) From Bifidobacterium
Adolescentis Atcc 15703 At 2.40 A Resolution
pdb|3O0F|A Chain A, Crystal Structure Of A Putative Metal-Dependent
Phosphoesterase (Bad_1165) From Bifidobacterium
Adolescentis Atcc 15703 At 1.94 A Resolution
Length = 301
Score = 84.7 bits (208), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 69/231 (29%), Positives = 104/231 (45%), Gaps = 21/231 (9%)
Query: 75 FELHSHSNFSDGYLSPSKLVERAHCNGVKVLALTDHDTMSGIPEAIETARRFGMKIIPGV 134
+++H H+ FSDG +P LVE+A G+ +A+ DHDT +G EA E + G+ ++ G
Sbjct: 15 WDIHCHTVFSDGTETPRTLVEQARKLGLHGVAIADHDTTAGWDEATEASEEIGLPLLLGT 74
Query: 135 EISTIFCQRGSESEEPVHILAYYSSCGPSKYEELENFLANIRDGRFLRAKDMIXXXXXXX 194
EI+ + + + VH LA+ PS E + + AN R R R K +
Sbjct: 75 EITAV------DEDVSVHXLAFQYD--PSN-EHISSXFANTRAARLRRTKRXVERLSQDF 125
Query: 195 XXXXWEHVAKIA-GKGVAPGRLHVARAMVEAGHVENLKQAFARYLYDGGPAYSTGSEPLA 253
+ +A++ G+ GR H+A A+V AG E AFA + Y P
Sbjct: 126 PITWDDVLAQVKEGERTTIGRPHIADALVAAGVYETRSDAFADAVSAKSKYYIPTPSPST 185
Query: 254 EVAVQLIHRTGGLAVLAHPWALKNPAAIIRKLKDV--------GLHGLEVY 296
+ + GG+ V AH +P R L D GL GLEV+
Sbjct: 186 HEVIAAVKGAGGVVVAAH---AGDPQRNRRLLSDEQLDAXIADGLDGLEVW 233
>pdb|3F2B|A Chain A, Dna Polymerase Polc From Geobacillus Kaustophilus Complex
With Dna, Dgtp, Mg And Zn
pdb|3F2C|A Chain A, Dna Polymerase Polc From Geobacillus Kaustophilus Complex
With Dna, Dgtp And Mn
pdb|3F2D|A Chain A, Dna Polymerase Polc From Geobacillus Kaustophilus Complex
With Dna, Dgtp, Mn And Zn
Length = 1041
Score = 48.1 bits (113), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 26/66 (39%), Positives = 39/66 (59%), Gaps = 2/66 (3%)
Query: 76 ELHSHSNFS--DGYLSPSKLVERAHCNGVKVLALTDHDTMSGIPEAIETARRFGMKIIPG 133
ELH H+ S D S +KL+E+A G +A+TDH + PEA A++ GMK+I G
Sbjct: 118 ELHLHTPMSQMDAVTSVTKLIEQAKKWGHPAIAVTDHAVVQSFPEAYSAAKKHGMKVIYG 177
Query: 134 VEISTI 139
+E + +
Sbjct: 178 LEANIV 183
>pdb|3E38|A Chain A, Crystal Structure Of A Two-Domain Protein Containing
Predicted Php- Like Metal-Dependent Phosphoesterase
(Bvu_3505) From Bacteroides Vulgatus Atcc 8482 At 2.20 A
Resolution
pdb|3E38|B Chain B, Crystal Structure Of A Two-Domain Protein Containing
Predicted Php- Like Metal-Dependent Phosphoesterase
(Bvu_3505) From Bacteroides Vulgatus Atcc 8482 At 2.20 A
Resolution
Length = 343
Score = 37.4 bits (85), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 39/74 (52%), Gaps = 12/74 (16%)
Query: 76 ELHSHSNFSDGYLSPSKLVERAHCNGVKVLALTDH--------DTMSGIPEAI----ETA 123
+ H HS FSDG + P+ V+ A+ +G+ ++LT+H D +S + E A
Sbjct: 22 DFHXHSVFSDGLVWPTVRVDEAYRDGLDAISLTEHIEYRPHKQDVVSDHNRSFDLCREQA 81
Query: 124 RRFGMKIIPGVEIS 137
+ G+ +I G EI+
Sbjct: 82 EKLGILLIKGSEIT 95
>pdb|3B0Y|A Chain A, K263d Mutant Of Polx From Thermus Thermophilus Hb8
Complexed With Ca- Dgtp
Length = 575
Score = 35.0 bits (79), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 30/59 (50%), Gaps = 3/59 (5%)
Query: 72 NVVFELHSHSNFSDGYLSPSKLVERAHCNGVKVLALTDHD---TMSGIPEAIETARRFG 127
V +L HS +SDG + +L E A G + LA+TDH ++G P E +R G
Sbjct: 336 QVKGDLQVHSTYSDGQNTLEELWEAAKTMGYRYLAVTDHSPAVRVAGGPSPEEALKRVG 394
>pdb|3AU2|A Chain A, Dna Polymerase X From Thermus Thermophilus Hb8 Complexed
With Ca-Dgtp
pdb|3AU6|A Chain A, Dna Polymerase X From Thermus Thermophilus Hb8 Ternary
Complex With PrimerTEMPLATE DNA AND DDGTP
pdb|3AUO|A Chain A, Dna Polymerase X From Thermus Thermophilus Hb8 Ternary
Complex With 1- Nt Gapped Dna And Ddgtp
pdb|3AUO|B Chain B, Dna Polymerase X From Thermus Thermophilus Hb8 Ternary
Complex With 1- Nt Gapped Dna And Ddgtp
Length = 575
Score = 35.0 bits (79), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 30/59 (50%), Gaps = 3/59 (5%)
Query: 72 NVVFELHSHSNFSDGYLSPSKLVERAHCNGVKVLALTDHD---TMSGIPEAIETARRFG 127
V +L HS +SDG + +L E A G + LA+TDH ++G P E +R G
Sbjct: 336 QVKGDLQVHSTYSDGQNTLEELWEAAKTMGYRYLAVTDHSPAVRVAGGPSPEEALKRVG 394
>pdb|3B0X|A Chain A, K263a Mutant Of Polx From Thermus Thermophilus Hb8
Complexed With Ca- Dgtp
Length = 575
Score = 35.0 bits (79), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 30/59 (50%), Gaps = 3/59 (5%)
Query: 72 NVVFELHSHSNFSDGYLSPSKLVERAHCNGVKVLALTDHD---TMSGIPEAIETARRFG 127
V +L HS +SDG + +L E A G + LA+TDH ++G P E +R G
Sbjct: 336 QVKGDLQVHSTYSDGQNTLEELWEAAKTMGYRYLAVTDHSPAVRVAGGPSPEEALKRVG 394
>pdb|2ANU|A Chain A, Crystal Structure Of Predicted Metal-Dependent
Phosphoesterase (Php Family) (Tm0559) From Thermotoga
Maritima At 2.40 A Resolution
pdb|2ANU|B Chain B, Crystal Structure Of Predicted Metal-Dependent
Phosphoesterase (Php Family) (Tm0559) From Thermotoga
Maritima At 2.40 A Resolution
pdb|2ANU|C Chain C, Crystal Structure Of Predicted Metal-Dependent
Phosphoesterase (Php Family) (Tm0559) From Thermotoga
Maritima At 2.40 A Resolution
pdb|2ANU|D Chain D, Crystal Structure Of Predicted Metal-Dependent
Phosphoesterase (Php Family) (Tm0559) From Thermotoga
Maritima At 2.40 A Resolution
pdb|2ANU|E Chain E, Crystal Structure Of Predicted Metal-Dependent
Phosphoesterase (Php Family) (Tm0559) From Thermotoga
Maritima At 2.40 A Resolution
pdb|2ANU|F Chain F, Crystal Structure Of Predicted Metal-Dependent
Phosphoesterase (Php Family) (Tm0559) From Thermotoga
Maritima At 2.40 A Resolution
Length = 255
Score = 32.3 bits (72), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 24/90 (26%), Positives = 38/90 (42%), Gaps = 27/90 (30%)
Query: 76 ELHSHSNFSDGYLSPSKLVERAHCNGVKVLALTDH---------DTMSGIP--------- 117
+ H H+N SDG+L ++V+ +GV V+++TDH +G P
Sbjct: 23 DFHVHTNXSDGHLPLGEVVDLFGKHGVDVVSITDHIVDRRTLEQRKRNGEPLGAITEDKF 82
Query: 118 ---------EAIETARRFGMKIIPGVEIST 138
E +G +IPGVEI+
Sbjct: 83 QDYLKRLWREQKRAWEEYGXILIPGVEITN 112
>pdb|3EYW|A Chain A, Crystal Structure Of The C-terminal Domain Of E. Coli Kefc
In Complex With Keff
pdb|3EYW|B Chain B, Crystal Structure Of The C-terminal Domain Of E. Coli Kefc
In Complex With Keff
pdb|3L9W|A Chain A, Kefc C-Terminal Domain In Complex With Keff And Gsh
pdb|3L9W|B Chain B, Kefc C-Terminal Domain In Complex With Keff And Gsh
pdb|3L9X|A Chain A, Kefc C-Terminal Domain In Complex With Keff And Esg
pdb|3L9X|B Chain B, Kefc C-Terminal Domain In Complex With Keff And Esg
Length = 413
Score = 31.2 bits (69), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 17/35 (48%), Positives = 23/35 (65%), Gaps = 6/35 (17%)
Query: 99 CNGVKVLALTDHDTMSGIPEAIETARRFGMKIIPG 133
+GVK++ L DHD P+ IET R+FGMK+ G
Sbjct: 25 SSGVKMVVL-DHD-----PDHIETLRKFGMKVFYG 53
>pdb|2HNH|A Chain A, Crystal Structure Of The Catalytic Alpha Subunit Of E.
Coli Replicative Dna Polymerase Iii
Length = 910
Score = 30.4 bits (67), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 32/64 (50%), Gaps = 2/64 (3%)
Query: 77 LHSHSNFS--DGYLSPSKLVERAHCNGVKVLALTDHDTMSGIPEAIETARRFGMKIIPGV 134
L HS++S DG + LV++A G+ LA+TD + G+ + G+K I G
Sbjct: 9 LRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAGIKPIVGA 68
Query: 135 EIST 138
+ +
Sbjct: 69 DFNV 72
>pdb|4DGS|A Chain A, The Crystals Structure Of Dehydrogenase From Rhizobium
Meliloti
Length = 340
Score = 28.9 bits (63), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 26/101 (25%), Positives = 43/101 (42%), Gaps = 10/101 (9%)
Query: 245 YSTGSEPLAEVAVQLIHR--TGGLAVLAHPWALKNPAAIIRKLKDVGLHGLEVYRSDGKL 302
Y P E A+ I TGG A L++ W K P+ I + VG +++ R+ +
Sbjct: 57 YQAADRPALEAALPSIRAVATGGGAGLSNEWXEKLPSLGIIAINGVGTDKVDLARARRRN 116
Query: 303 VDVNFLEKI--DNF------LLLLCLRQISNCDCALYPYPW 335
+DV + D+ L L LR++ + D + W
Sbjct: 117 IDVTTTPGVLADDVADLGIALXLAVLRRVGDGDRLVREGRW 157
>pdb|2W9M|A Chain A, Structure Of Family X Dna Polymerase From Deinococcus
Radiodurans
pdb|2W9M|B Chain B, Structure Of Family X Dna Polymerase From Deinococcus
Radiodurans
Length = 578
Score = 28.9 bits (63), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 20/75 (26%), Positives = 34/75 (45%), Gaps = 12/75 (16%)
Query: 77 LHSHSNFSDGYLSPSKLVERAHCNGVKVLALTDHD---------TMSGIPEAIETAR--- 124
+H+HS +SDG S ++ E G + L DH T+ + E ++ R
Sbjct: 331 IHTHSTWSDGGASIREMAEATLTLGHEFLGTADHSRAAYYANGLTIERLREQLKEIRELQ 390
Query: 125 RFGMKIIPGVEISTI 139
R G+ I+ G E+ +
Sbjct: 391 RAGLPIVAGSEVDIL 405
>pdb|4D9Q|A Chain A, Inhibiting Alternative Pathway Complement Activation By
Targeting The Exosite On Factor D
pdb|4D9Q|B Chain B, Inhibiting Alternative Pathway Complement Activation By
Targeting The Exosite On Factor D
Length = 228
Score = 28.1 bits (61), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 30/99 (30%), Positives = 42/99 (42%), Gaps = 16/99 (16%)
Query: 252 LAEVAVQLIHRTGGLAVLAHPWALKNPAAIIRKLKD------VGLHGLEVYRSDGKLVDV 305
+A V V H GG+ V A W L + A + D +G H L +L DV
Sbjct: 15 MASVQVNGEHLCGGVLV-AEQWVL-SAAHCLEDAADGKVQVLLGAHSLSQPEPSKRLYDV 72
Query: 306 --------NFLEKIDNFLLLLCLRQISNCDCALYPYPWQ 336
+ + ID+ LLLL L + + A+ P PWQ
Sbjct: 73 LRAVPHPDSRPDTIDHDLLLLQLSEKATLGPAVRPLPWQ 111
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.138 0.419
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,684,481
Number of Sequences: 62578
Number of extensions: 367906
Number of successful extensions: 924
Number of sequences better than 100.0: 21
Number of HSP's better than 100.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 911
Number of HSP's gapped (non-prelim): 23
length of query: 357
length of database: 14,973,337
effective HSP length: 100
effective length of query: 257
effective length of database: 8,715,537
effective search space: 2239893009
effective search space used: 2239893009
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 52 (24.6 bits)