Query 018376
Match_columns 357
No_of_seqs 267 out of 1999
Neff 6.6
Searched_HMMs 46136
Date Fri Mar 29 08:30:07 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018376.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/018376hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0613 Predicted metal-depend 100.0 3.5E-38 7.6E-43 298.6 21.6 250 72-336 1-253 (258)
2 PRK09248 putative hydrolase; V 99.8 5.2E-19 1.1E-23 166.2 16.0 174 72-329 2-195 (246)
3 PRK00448 polC DNA polymerase I 99.8 7.2E-20 1.6E-24 205.2 5.6 207 71-319 331-561 (1437)
4 PF02811 PHP: PHP domain; Int 99.7 7.9E-17 1.7E-21 141.5 15.2 78 75-158 1-80 (175)
5 smart00481 POLIIIAc DNA polyme 99.7 2.3E-17 5E-22 124.8 8.5 63 76-138 1-65 (67)
6 PRK08392 hypothetical protein; 99.7 9.2E-17 2E-21 148.3 12.5 168 75-329 1-184 (215)
7 TIGR00375 conserved hypothetic 99.7 1.9E-15 4E-20 149.6 15.5 169 75-329 2-189 (374)
8 PRK09532 DNA polymerase III su 99.6 6.6E-15 1.4E-19 159.8 19.2 100 73-174 2-104 (874)
9 PRK07328 histidinol-phosphatas 99.6 4.8E-15 1E-19 141.2 16.0 184 72-329 1-231 (269)
10 PRK05672 dnaE2 error-prone DNA 99.6 6.6E-15 1.4E-19 162.3 18.5 118 73-207 4-123 (1046)
11 PRK07135 dnaE DNA polymerase I 99.6 5.1E-15 1.1E-19 161.2 9.6 91 74-176 3-95 (973)
12 PRK05673 dnaE DNA polymerase I 99.5 1.5E-13 3.3E-18 152.7 18.3 100 74-175 2-105 (1135)
13 PRK00912 ribonuclease P protei 99.5 1.7E-13 3.8E-18 128.2 14.5 161 72-329 1-177 (237)
14 PRK06361 hypothetical protein; 99.5 3.5E-13 7.7E-18 123.7 16.2 162 79-329 1-171 (212)
15 PRK07945 hypothetical protein; 99.5 1.3E-13 2.7E-18 135.7 12.7 173 71-329 94-294 (335)
16 TIGR01856 hisJ_fam histidinol 99.5 4.6E-13 1E-17 126.6 15.8 65 75-139 1-87 (253)
17 PRK08123 histidinol-phosphatas 99.5 6.5E-13 1.4E-17 126.8 16.2 67 73-139 2-93 (270)
18 COG1387 HIS2 Histidinol phosph 99.5 1.9E-13 4E-18 128.3 11.3 174 73-330 1-197 (237)
19 TIGR00594 polc DNA-directed DN 99.5 6.3E-13 1.4E-17 146.7 16.3 121 74-207 1-128 (1022)
20 PRK07279 dnaE DNA polymerase I 99.5 2.5E-13 5.4E-18 148.8 12.4 95 73-175 1-97 (1034)
21 PRK05898 dnaE DNA polymerase I 99.4 5.3E-13 1.2E-17 144.9 11.2 95 73-177 1-97 (971)
22 PRK06826 dnaE DNA polymerase I 99.4 5.4E-13 1.2E-17 148.2 11.1 123 72-207 3-131 (1151)
23 PRK08609 hypothetical protein; 99.4 1.9E-12 4.1E-17 135.5 14.4 172 72-329 333-528 (570)
24 PRK07374 dnaE DNA polymerase I 99.4 7.3E-13 1.6E-17 147.2 10.9 102 73-176 2-108 (1170)
25 PRK06920 dnaE DNA polymerase I 99.4 4.9E-12 1.1E-16 140.0 16.8 115 73-207 2-118 (1107)
26 PRK05588 histidinol-phosphatas 99.4 3.3E-12 7.3E-17 120.7 13.1 182 74-329 1-220 (255)
27 COG0587 DnaE DNA polymerase II 99.4 1.2E-12 2.6E-17 144.2 11.4 103 72-177 2-106 (1139)
28 TIGR01405 polC_Gram_pos DNA po 99.4 7.4E-13 1.6E-17 147.6 9.4 70 71-140 101-172 (1213)
29 PRK07329 hypothetical protein; 99.2 6.7E-11 1.5E-15 111.5 11.4 61 75-139 2-78 (246)
30 COG2176 PolC DNA polymerase II 99.1 2.8E-10 6E-15 123.3 8.5 70 71-140 333-404 (1444)
31 PRK06740 histidinol-phosphatas 99.1 1.7E-09 3.7E-14 106.3 13.2 70 254-329 205-294 (331)
32 COG1379 PHP family phosphoeste 99.0 8E-09 1.7E-13 99.0 13.0 79 72-159 2-91 (403)
33 COG4464 CapC Capsular polysacc 97.8 0.00032 7E-09 64.5 12.6 66 74-139 1-84 (254)
34 PF12228 DUF3604: Protein of u 93.4 0.069 1.5E-06 56.2 3.6 46 72-117 6-71 (592)
35 COG0084 TatD Mg-dependent DNas 93.0 3.4 7.4E-05 39.5 14.2 55 72-127 1-55 (256)
36 PF13263 PHP_C: PHP-associated 91.0 0.15 3.3E-06 37.0 1.9 20 306-329 6-25 (56)
37 TIGR00010 hydrolase, TatD fami 89.3 0.73 1.6E-05 42.4 5.5 61 74-136 1-61 (252)
38 PF01026 TatD_DNase: TatD rela 83.1 2.3 4.9E-05 40.1 5.3 62 75-137 1-62 (255)
39 PRK10812 putative DNAse; Provi 82.5 2.9 6.3E-05 39.9 5.9 54 73-127 2-58 (265)
40 PRK13125 trpA tryptophan synth 80.3 4 8.7E-05 38.3 5.9 62 75-138 75-138 (244)
41 PRK11449 putative deoxyribonuc 80.3 3.8 8.2E-05 38.9 5.8 54 73-127 4-57 (258)
42 PRK10425 DNase TatD; Provision 78.4 4.4 9.6E-05 38.5 5.6 53 74-127 1-53 (258)
43 COG1902 NemA NADH:flavin oxido 78.0 4.7 0.0001 40.5 5.9 24 251-274 83-108 (363)
44 cd01310 TatD_DNAse TatD like p 76.6 6.5 0.00014 36.0 6.1 59 74-134 1-59 (251)
45 cd02930 DCR_FMN 2,4-dienoyl-Co 75.8 6.8 0.00015 38.9 6.3 24 252-275 78-103 (353)
46 PF10566 Glyco_hydro_97: Glyco 75.0 9.6 0.00021 36.8 6.9 70 250-319 72-154 (273)
47 PRK09997 hydroxypyruvate isome 73.3 8.2 0.00018 36.1 5.9 42 278-320 17-58 (258)
48 PRK13523 NADPH dehydrogenase N 72.0 7.4 0.00016 38.6 5.5 25 251-275 81-107 (337)
49 TIGR03234 OH-pyruv-isom hydrox 71.9 7.6 0.00016 36.1 5.3 42 278-320 16-57 (254)
50 PRK09989 hypothetical protein; 68.1 13 0.00027 34.9 6.0 41 279-320 18-58 (258)
51 cd01295 AdeC Adenine deaminase 67.9 8.2 0.00018 39.1 5.0 60 73-134 10-74 (422)
52 COG5016 Pyruvate/oxaloacetate 67.5 32 0.0007 35.1 8.8 50 89-138 99-149 (472)
53 PRK10605 N-ethylmaleimide redu 66.6 13 0.00029 37.1 6.0 13 285-297 168-180 (362)
54 cd04747 OYE_like_5_FMN Old yel 65.9 15 0.00032 36.9 6.2 23 252-274 79-103 (361)
55 cd04735 OYE_like_4_FMN Old yel 63.9 17 0.00036 36.2 6.1 23 252-274 79-103 (353)
56 PRK12581 oxaloacetate decarbox 63.4 39 0.00086 35.1 8.9 48 90-137 107-155 (468)
57 cd04734 OYE_like_3_FMN Old yel 62.8 17 0.00037 36.0 6.0 22 253-274 79-102 (343)
58 PRK07228 N-ethylammeline chlor 61.9 23 0.0005 35.9 6.9 63 73-137 57-148 (445)
59 cd02803 OYE_like_FMN_family Ol 60.5 13 0.00028 36.1 4.6 14 284-297 149-162 (327)
60 PRK09856 fructoselysine 3-epim 60.3 26 0.00057 32.7 6.6 43 278-320 15-65 (275)
61 cd04733 OYE_like_2_FMN Old yel 59.9 22 0.00047 35.0 6.1 23 252-274 83-107 (338)
62 PF02679 ComA: (2R)-phospho-3- 59.1 22 0.00047 33.8 5.7 67 253-319 56-130 (244)
63 PLN02411 12-oxophytodienoate r 59.0 25 0.00054 35.6 6.5 14 285-298 174-187 (391)
64 cd02933 OYE_like_FMN Old yello 58.9 22 0.00049 35.1 6.0 22 253-274 79-102 (338)
65 cd02932 OYE_YqiM_FMN Old yello 58.1 18 0.00039 35.6 5.2 23 252-274 78-102 (336)
66 TIGR01501 MthylAspMutase methy 57.4 33 0.00071 29.5 6.0 41 88-128 39-81 (134)
67 PRK13209 L-xylulose 5-phosphat 57.2 30 0.00066 32.5 6.4 43 278-320 23-75 (283)
68 COG0826 Collagenase and relate 57.1 26 0.00057 34.9 6.2 61 252-319 50-117 (347)
69 TIGR00640 acid_CoA_mut_C methy 56.6 24 0.00051 30.1 5.0 42 86-127 38-81 (132)
70 PRK09358 adenosine deaminase; 56.2 11 0.00023 37.0 3.2 29 73-104 11-39 (340)
71 PF00724 Oxidored_FMN: NADH:fl 55.7 37 0.00081 33.5 7.0 23 252-274 81-105 (341)
72 cd02929 TMADH_HD_FMN Trimethyl 55.4 28 0.00061 34.8 6.1 22 253-274 85-108 (370)
73 cd02931 ER_like_FMN Enoate red 55.4 24 0.00053 35.5 5.7 21 252-272 84-106 (382)
74 COG2355 Zn-dependent dipeptida 54.9 61 0.0013 31.9 8.2 61 254-334 205-268 (313)
75 cd01292 metallo-dependent_hydr 54.1 12 0.00026 33.8 3.1 70 253-330 163-237 (275)
76 cd04726 KGPDC_HPS 3-Keto-L-gul 53.9 51 0.0011 29.3 7.1 63 255-317 42-105 (202)
77 PLN03059 beta-galactosidase; P 52.7 29 0.00064 38.6 6.1 50 271-320 52-116 (840)
78 PTZ00170 D-ribulose-5-phosphat 52.5 91 0.002 29.0 8.7 62 255-317 54-116 (228)
79 cd06556 ICL_KPHMT Members of t 52.4 48 0.001 31.3 6.8 71 253-329 114-204 (240)
80 TIGR03849 arch_ComA phosphosul 51.7 45 0.00098 31.6 6.4 67 253-319 43-117 (237)
81 PTZ00124 adenosine deaminase; 51.1 14 0.0003 37.1 3.1 29 73-104 36-64 (362)
82 PRK13210 putative L-xylulose 5 50.6 45 0.00098 31.2 6.5 42 279-320 19-70 (284)
83 PRK06294 coproporphyrinogen II 50.3 58 0.0013 32.5 7.4 77 237-317 63-154 (370)
84 PF09692 Arb1: Argonaute siRNA 49.7 6.7 0.00015 39.8 0.6 21 290-310 276-298 (396)
85 cd03309 CmuC_like CmuC_like. P 49.6 53 0.0012 32.3 6.9 47 251-299 198-244 (321)
86 COG0800 Eda 2-keto-3-deoxy-6-p 49.3 64 0.0014 30.0 6.9 60 254-315 4-63 (211)
87 PF00962 A_deaminase: Adenosin 49.1 16 0.00035 35.4 3.2 28 73-103 3-30 (331)
88 TIGR00539 hemN_rel putative ox 47.7 70 0.0015 31.7 7.5 77 237-317 56-151 (360)
89 PF01301 Glyco_hydro_35: Glyco 47.2 27 0.0006 34.2 4.5 49 271-319 17-80 (319)
90 PTZ00170 D-ribulose-5-phosphat 47.0 79 0.0017 29.4 7.3 57 72-138 65-123 (228)
91 cd05017 SIS_PGI_PMI_1 The memb 46.0 49 0.0011 27.1 5.2 39 87-131 56-94 (119)
92 TIGR02631 xylA_Arthro xylose i 45.3 40 0.00086 34.0 5.4 43 278-320 34-86 (382)
93 cd02072 Glm_B12_BD B12 binding 45.1 78 0.0017 27.0 6.4 41 88-128 37-79 (128)
94 TIGR02810 agaZ_gatZ D-tagatose 43.8 3.8E+02 0.0083 27.6 12.3 48 252-300 239-286 (420)
95 PRK05628 coproporphyrinogen II 43.6 74 0.0016 31.6 7.0 77 237-317 64-159 (375)
96 PTZ00372 endonuclease 4-like p 42.5 45 0.00097 34.1 5.3 52 75-129 131-191 (413)
97 TIGR00542 hxl6Piso_put hexulos 42.2 58 0.0012 30.7 5.8 43 279-321 19-71 (279)
98 PRK09875 putative hydrolase; P 41.9 1.2E+02 0.0027 29.4 8.1 75 24-128 128-204 (292)
99 PRK10027 cryptic adenine deami 41.8 41 0.00088 36.0 5.0 62 73-136 85-151 (588)
100 PRK08508 biotin synthase; Prov 41.7 1.2E+02 0.0026 28.9 7.9 66 253-320 77-155 (279)
101 COG0613 Predicted metal-depend 41.3 16 0.00034 34.9 1.7 68 250-318 97-169 (258)
102 smart00812 Alpha_L_fucos Alpha 40.8 64 0.0014 32.6 6.1 51 86-138 79-150 (384)
103 PRK15108 biotin synthase; Prov 40.2 1.5E+02 0.0033 29.3 8.5 65 253-320 113-189 (345)
104 PRK07094 biotin synthase; Prov 40.0 1.2E+02 0.0025 29.4 7.6 72 252-325 104-188 (323)
105 TIGR02336 1,3-beta-galactosyl- 39.7 81 0.0018 34.3 6.7 41 252-294 291-333 (719)
106 TIGR01430 aden_deam adenosine 39.7 28 0.0006 33.8 3.2 30 73-105 2-31 (324)
107 PF01120 Alpha_L_fucos: Alpha- 39.3 48 0.001 32.8 4.9 54 83-138 86-160 (346)
108 PRK09057 coproporphyrinogen II 39.2 1.1E+02 0.0023 30.7 7.4 55 237-295 60-120 (380)
109 PRK14042 pyruvate carboxylase 39.1 1.2E+02 0.0026 32.7 8.0 49 90-138 98-147 (596)
110 PRK05718 keto-hydroxyglutarate 38.5 1.2E+02 0.0025 28.2 6.9 61 253-315 5-65 (212)
111 cd01306 PhnM PhnM is believed 38.5 4E+02 0.0086 26.3 17.9 45 71-115 78-123 (325)
112 COG0159 TrpA Tryptophan syntha 38.3 2.1E+02 0.0046 27.6 8.8 82 230-319 64-151 (265)
113 PRK06552 keto-hydroxyglutarate 38.1 48 0.001 30.6 4.4 45 86-135 73-117 (213)
114 PRK13111 trpA tryptophan synth 37.2 66 0.0014 30.7 5.2 48 87-135 103-150 (258)
115 cd01320 ADA Adenosine deaminas 37.0 33 0.00071 33.2 3.2 29 73-104 3-31 (325)
116 cd02071 MM_CoA_mut_B12_BD meth 36.8 73 0.0016 26.3 4.9 41 86-126 35-77 (122)
117 PF01261 AP_endonuc_2: Xylose 36.7 29 0.00063 30.3 2.6 39 282-320 1-45 (213)
118 TIGR02967 guan_deamin guanine 36.4 1E+02 0.0022 30.6 6.8 40 95-136 97-138 (401)
119 PRK06256 biotin synthase; Vali 36.2 1.4E+02 0.003 29.1 7.5 65 253-319 128-204 (336)
120 PTZ00246 proteasome subunit al 35.6 32 0.00069 32.4 2.8 38 74-112 4-42 (253)
121 TIGR01212 radical SAM protein, 35.3 74 0.0016 30.8 5.4 88 236-325 81-186 (302)
122 COG0399 WecE Predicted pyridox 35.1 1.4E+02 0.003 30.2 7.4 80 238-319 71-153 (374)
123 PF13380 CoA_binding_2: CoA bi 34.7 75 0.0016 26.2 4.6 42 90-134 68-110 (116)
124 PRK10657 isoaspartyl dipeptida 34.3 1.1E+02 0.0025 30.0 6.7 59 73-133 57-127 (388)
125 PRK05904 coproporphyrinogen II 34.0 1.3E+02 0.0028 30.0 6.9 77 237-317 61-154 (353)
126 TIGR01182 eda Entner-Doudoroff 33.3 63 0.0014 29.8 4.3 45 86-135 65-109 (204)
127 PRK08446 coproporphyrinogen II 33.2 1.4E+02 0.003 29.5 7.1 77 237-317 56-149 (350)
128 PF06135 DUF965: Bacterial pro 33.0 63 0.0014 25.3 3.5 40 217-262 24-63 (79)
129 PRK13111 trpA tryptophan synth 33.0 2.5E+02 0.0054 26.7 8.5 47 252-299 105-152 (258)
130 cd05014 SIS_Kpsf KpsF-like pro 32.9 52 0.0011 26.8 3.4 27 86-112 59-85 (128)
131 PRK02261 methylaspartate mutas 32.9 1.5E+02 0.0032 25.4 6.3 40 87-126 40-81 (137)
132 PRK09228 guanine deaminase; Pr 32.8 1.2E+02 0.0026 30.8 6.7 40 96-137 123-164 (433)
133 PRK02083 imidazole glycerol ph 32.6 1.9E+02 0.0041 27.0 7.6 28 85-112 150-177 (253)
134 PRK08599 coproporphyrinogen II 32.6 1.7E+02 0.0038 29.0 7.7 64 252-317 69-151 (377)
135 PRK08255 salicylyl-CoA 5-hydro 32.6 91 0.002 34.3 6.1 23 252-274 476-501 (765)
136 COG1082 IolE Sugar phosphate i 32.4 1.4E+02 0.0029 27.6 6.5 47 86-132 13-63 (274)
137 PRK00366 ispG 4-hydroxy-3-meth 32.3 2.1E+02 0.0045 28.8 7.9 57 73-139 83-142 (360)
138 PLN02591 tryptophan synthase 31.8 79 0.0017 30.0 4.8 44 88-132 93-136 (250)
139 PF01726 LexA_DNA_bind: LexA D 31.8 96 0.0021 23.1 4.3 41 188-228 17-57 (65)
140 PRK04147 N-acetylneuraminate l 31.8 1.8E+02 0.0038 27.9 7.4 55 264-318 72-133 (293)
141 CHL00200 trpA tryptophan synth 31.6 1E+02 0.0022 29.4 5.6 44 90-134 108-151 (263)
142 COG0329 DapA Dihydrodipicolina 31.5 1.6E+02 0.0035 28.6 7.0 59 260-318 67-133 (299)
143 PF13704 Glyco_tranf_2_4: Glyc 31.5 85 0.0018 24.3 4.3 32 90-121 7-38 (97)
144 PF00046 Homeobox: Homeobox do 31.2 1E+02 0.0023 21.4 4.3 20 24-43 2-21 (57)
145 PRK06380 metal-dependent hydro 30.5 1.5E+02 0.0031 29.8 6.8 60 73-136 55-142 (418)
146 PF01081 Aldolase: KDPG and KH 30.4 80 0.0017 28.9 4.4 44 86-134 65-108 (196)
147 cd00952 CHBPH_aldolase Trans-o 30.3 1.8E+02 0.0038 28.3 7.1 57 263-319 75-139 (309)
148 PRK03620 5-dehydro-4-deoxygluc 29.9 2.1E+02 0.0045 27.7 7.5 55 263-319 74-136 (303)
149 TIGR00683 nanA N-acetylneurami 29.7 2.6E+02 0.0057 26.8 8.2 55 264-318 69-131 (290)
150 cd00951 KDGDH 5-dehydro-4-deox 29.7 2.5E+02 0.0055 26.8 8.0 56 263-319 67-129 (289)
151 PRK13347 coproporphyrinogen II 29.7 1.5E+02 0.0032 30.5 6.7 42 252-295 121-168 (453)
152 TIGR00674 dapA dihydrodipicoli 29.6 2.2E+02 0.0047 27.1 7.5 56 264-319 66-128 (285)
153 PRK01060 endonuclease IV; Prov 29.6 1.4E+02 0.003 28.0 6.1 40 278-317 14-62 (281)
154 PRK13307 bifunctional formalde 29.5 2.4E+02 0.0052 28.7 8.0 63 255-318 215-279 (391)
155 PF01208 URO-D: Uroporphyrinog 29.5 71 0.0015 31.0 4.2 46 251-298 220-265 (343)
156 cd00717 URO-D Uroporphyrinogen 29.4 2.2E+02 0.0048 27.7 7.7 45 251-298 215-260 (335)
157 cd03753 proteasome_alpha_type_ 29.4 48 0.001 30.2 2.8 37 75-112 1-38 (213)
158 KOG2422 Uncharacterized conser 29.2 20 0.00043 38.1 0.3 26 98-123 239-264 (665)
159 TIGR03128 RuMP_HxlA 3-hexulose 29.1 1.6E+02 0.0034 26.3 6.2 43 89-133 63-108 (206)
160 PF07894 DUF1669: Protein of u 28.9 3.4E+02 0.0074 26.4 8.6 35 72-107 118-152 (284)
161 COG2185 Sbm Methylmalonyl-CoA 28.7 1.4E+02 0.003 26.1 5.3 42 87-128 49-92 (143)
162 TIGR02313 HpaI-NOT-DapA 2,4-di 28.6 2.8E+02 0.006 26.7 8.1 56 263-318 67-130 (294)
163 PRK08203 hydroxydechloroatrazi 28.3 1.6E+02 0.0034 29.9 6.7 62 73-136 60-157 (451)
164 TIGR03564 F420_MSMEG_4879 F420 28.1 1.2E+02 0.0026 28.5 5.4 46 92-137 3-49 (265)
165 PRK08898 coproporphyrinogen II 28.1 1.3E+02 0.0028 30.3 5.9 55 237-295 78-138 (394)
166 PRK00311 panB 3-methyl-2-oxobu 28.0 3.2E+02 0.007 26.2 8.3 71 253-329 119-209 (264)
167 COG1082 IolE Sugar phosphate i 27.9 1E+02 0.0022 28.5 4.8 44 251-294 15-63 (274)
168 PLN02746 hydroxymethylglutaryl 27.7 5.7E+02 0.012 25.5 10.3 62 252-319 101-179 (347)
169 cd00408 DHDPS-like Dihydrodipi 27.6 2.2E+02 0.0048 26.8 7.2 55 264-318 65-126 (281)
170 PRK05473 hypothetical protein; 27.6 92 0.002 24.8 3.7 40 217-262 27-66 (86)
171 COG3473 Maleate cis-trans isom 27.0 1.5E+02 0.0033 27.8 5.5 59 254-318 88-146 (238)
172 PRK09249 coproporphyrinogen II 27.0 1.9E+02 0.0042 29.6 7.1 42 252-295 120-167 (453)
173 TIGR03234 OH-pyruv-isom hydrox 26.7 1.7E+02 0.0038 26.9 6.2 44 87-131 13-56 (254)
174 cd05008 SIS_GlmS_GlmD_1 SIS (S 26.6 76 0.0017 25.7 3.4 30 82-111 54-83 (126)
175 cd00950 DHDPS Dihydrodipicolin 26.5 2.2E+02 0.0049 26.9 7.0 56 264-319 68-130 (284)
176 PRK09722 allulose-6-phosphate 26.3 4.2E+02 0.0092 24.8 8.6 63 253-317 71-134 (229)
177 PRK07379 coproporphyrinogen II 26.2 2.2E+02 0.0047 28.8 7.2 77 237-317 71-166 (400)
178 COG0159 TrpA Tryptophan syntha 26.2 1.3E+02 0.0027 29.1 5.1 50 88-138 109-158 (265)
179 cd00443 ADA_AMPD Adenosine/AMP 26.2 57 0.0012 31.6 2.8 23 74-99 3-25 (305)
180 PRK12677 xylose isomerase; Pro 25.9 1.4E+02 0.003 30.2 5.6 43 87-129 30-82 (384)
181 PF00290 Trp_syntA: Tryptophan 25.8 93 0.002 29.8 4.1 43 89-132 103-145 (259)
182 PRK15052 D-tagatose-1,6-bispho 25.6 7.5E+02 0.016 25.5 11.8 47 252-300 239-285 (421)
183 TIGR01178 ade adenine deaminas 25.5 92 0.002 33.1 4.4 61 73-135 51-116 (552)
184 PRK09856 fructoselysine 3-epim 25.5 1.5E+02 0.0032 27.6 5.5 45 87-131 12-64 (275)
185 PRK06582 coproporphyrinogen II 25.4 2.1E+02 0.0046 28.8 6.9 55 237-295 67-127 (390)
186 PF09508 Lact_bio_phlase: Lact 25.4 81 0.0018 34.2 3.9 41 252-294 288-330 (716)
187 TIGR00676 fadh2 5,10-methylene 25.3 5.9E+02 0.013 24.1 13.9 68 249-316 108-184 (272)
188 TIGR00433 bioB biotin syntheta 25.3 3.2E+02 0.007 25.7 7.9 36 254-292 101-136 (296)
189 cd01310 TatD_DNAse TatD like p 25.3 2.5E+02 0.0055 25.3 6.9 47 75-130 124-170 (251)
190 cd03749 proteasome_alpha_type_ 25.2 61 0.0013 29.5 2.7 36 76-112 2-38 (211)
191 PRK00115 hemE uroporphyrinogen 25.2 2.8E+02 0.0061 27.2 7.6 45 251-298 224-269 (346)
192 PRK00748 1-(5-phosphoribosyl)- 25.2 3.5E+02 0.0077 24.5 7.9 51 88-138 30-85 (233)
193 PF14871 GHL6: Hypothetical gl 24.8 1.3E+02 0.0029 25.6 4.5 50 89-138 1-68 (132)
194 PRK08208 coproporphyrinogen II 24.6 2.4E+02 0.0053 28.7 7.2 64 253-318 110-193 (430)
195 PRK05660 HemN family oxidoredu 24.5 2.1E+02 0.0046 28.6 6.7 77 237-317 63-158 (378)
196 TIGR01464 hemE uroporphyrinoge 24.5 2.3E+02 0.005 27.6 6.9 45 251-298 218-263 (338)
197 PF07905 PucR: Purine cataboli 24.5 1.9E+02 0.004 24.0 5.4 43 89-131 60-103 (123)
198 TIGR01975 isoAsp_dipep isoaspa 24.5 7.3E+02 0.016 24.9 16.3 60 73-134 57-128 (389)
199 PLN02417 dihydrodipicolinate s 24.4 3.1E+02 0.0068 26.1 7.6 51 263-313 68-125 (280)
200 PRK09997 hydroxypyruvate isome 24.0 2.1E+02 0.0046 26.5 6.3 45 86-131 13-57 (258)
201 cd02067 B12-binding B12 bindin 23.9 2.7E+02 0.0059 22.4 6.2 29 83-111 32-60 (119)
202 PF04309 G3P_antiterm: Glycero 23.9 3.5E+02 0.0075 24.4 7.2 68 248-323 28-99 (175)
203 PRK12677 xylose isomerase; Pro 23.9 1.5E+02 0.0033 29.9 5.5 42 279-320 34-85 (384)
204 PRK08207 coproporphyrinogen II 23.9 2.2E+02 0.0048 29.7 6.8 77 237-317 223-320 (488)
205 cd01303 GDEase Guanine deamina 23.8 2.6E+02 0.0057 28.2 7.3 40 96-137 119-160 (429)
206 cd06557 KPHMT-like Ketopantoat 23.8 5.1E+02 0.011 24.6 8.8 71 253-329 116-206 (254)
207 PRK00124 hypothetical protein; 23.8 81 0.0018 27.8 3.1 23 90-112 13-37 (151)
208 PF02310 B12-binding: B12 bind 23.7 1.2E+02 0.0025 24.4 3.9 38 85-123 35-72 (121)
209 COG2100 Predicted Fe-S oxidore 23.7 1.7E+02 0.0036 29.4 5.5 52 247-298 171-223 (414)
210 PRK05799 coproporphyrinogen II 23.7 2.8E+02 0.0061 27.4 7.4 40 254-295 71-115 (374)
211 cd04795 SIS SIS domain. SIS (S 23.7 87 0.0019 23.3 3.0 22 87-108 60-81 (87)
212 PRK13125 trpA tryptophan synth 23.6 3.8E+02 0.0081 25.0 7.8 62 252-315 89-153 (244)
213 TIGR03572 WbuZ glycosyl amidat 23.6 2.5E+02 0.0055 25.6 6.6 51 88-138 30-85 (232)
214 COG3494 Uncharacterized protei 23.6 1.5E+02 0.0034 28.5 5.0 58 263-320 210-275 (279)
215 TIGR03314 Se_ssnA putative sel 23.5 2.2E+02 0.0049 28.9 6.8 39 97-137 116-159 (441)
216 PRK03170 dihydrodipicolinate s 23.5 3.1E+02 0.0068 26.0 7.4 56 263-318 68-130 (292)
217 TIGR00735 hisF imidazoleglycer 23.5 2.5E+02 0.0054 26.3 6.6 52 87-138 29-85 (254)
218 TIGR03700 mena_SCO4494 putativ 23.4 2.6E+02 0.0056 27.6 7.0 73 253-325 114-211 (351)
219 PRK04302 triosephosphate isome 23.3 3.6E+02 0.0078 24.6 7.5 60 257-316 48-115 (223)
220 cd00954 NAL N-Acetylneuraminic 23.2 4E+02 0.0087 25.3 8.1 55 264-318 69-131 (288)
221 COG1737 RpiR Transcriptional r 23.2 67 0.0014 30.7 2.7 24 87-110 190-213 (281)
222 PRK07583 cytosine deaminase-li 23.1 2E+02 0.0043 29.2 6.3 59 73-131 226-290 (438)
223 PRK13936 phosphoheptose isomer 23.0 88 0.0019 28.2 3.3 24 88-111 125-148 (197)
224 cd05005 SIS_PHI Hexulose-6-pho 23.0 91 0.002 27.3 3.4 25 88-112 89-113 (179)
225 TIGR00262 trpA tryptophan synt 22.9 1.5E+02 0.0032 28.2 4.9 46 86-132 94-145 (256)
226 PF13081 DUF3941: Domain of un 22.9 54 0.0012 19.8 1.2 21 7-27 2-22 (24)
227 PF13594 Amidohydro_5: Amidohy 22.8 66 0.0014 23.5 2.0 31 73-103 35-66 (68)
228 PRK13585 1-(5-phosphoribosyl)- 22.7 2.1E+02 0.0046 26.2 5.9 51 88-138 32-87 (241)
229 PF00296 Bac_luciferase: Lucif 22.7 1.9E+02 0.0041 27.3 5.7 47 92-138 27-80 (307)
230 cd00019 AP2Ec AP endonuclease 22.6 2.2E+02 0.0047 26.7 6.1 17 251-267 10-28 (279)
231 cd08562 GDPD_EcUgpQ_like Glyce 22.5 1.7E+02 0.0037 26.4 5.2 40 254-297 189-228 (229)
232 COG1809 (2R)-phospho-3-sulfola 22.4 1.9E+02 0.0042 27.3 5.3 64 253-318 62-135 (258)
233 cd01911 proteasome_alpha prote 22.4 94 0.002 28.1 3.4 36 76-112 2-38 (209)
234 cd06547 GH85_ENGase Endo-beta- 22.4 70 0.0015 31.8 2.7 39 70-108 28-66 (339)
235 PF08288 PIGA: PIGA (GPI ancho 22.3 87 0.0019 25.2 2.7 33 76-112 53-85 (90)
236 TIGR00559 pdxJ pyridoxine 5'-p 22.3 6.6E+02 0.014 23.8 9.0 65 251-320 110-187 (237)
237 PF13580 SIS_2: SIS domain; PD 22.3 87 0.0019 26.4 3.0 22 87-108 116-137 (138)
238 TIGR03249 KdgD 5-dehydro-4-deo 22.2 3E+02 0.0065 26.4 7.0 54 263-318 72-133 (296)
239 cd08582 GDPD_like_2 Glyceropho 22.2 1.8E+02 0.0038 26.6 5.2 42 254-299 191-232 (233)
240 TIGR00612 ispG_gcpE 1-hydroxy- 22.0 4.6E+02 0.01 26.2 8.2 58 72-139 74-133 (346)
241 TIGR03128 RuMP_HxlA 3-hexulose 22.0 4E+02 0.0087 23.6 7.5 44 257-300 69-114 (206)
242 PF00701 DHDPS: Dihydrodipicol 21.9 2.9E+02 0.0064 26.2 6.9 57 263-319 68-131 (289)
243 PRK06552 keto-hydroxyglutarate 21.8 3.4E+02 0.0073 25.0 7.0 59 255-315 5-63 (213)
244 PRK08674 bifunctional phosphog 21.6 1.7E+02 0.0037 28.7 5.2 37 87-129 91-127 (337)
245 cd05710 SIS_1 A subgroup of th 21.6 1.1E+02 0.0024 25.0 3.4 28 85-112 58-85 (120)
246 cd01298 ATZ_TRZ_like TRZ/ATZ f 21.6 2.1E+02 0.0045 28.1 6.0 61 73-136 57-146 (411)
247 TIGR00538 hemN oxygen-independ 21.4 2.7E+02 0.0058 28.5 6.8 42 252-295 120-167 (455)
248 cd03174 DRE_TIM_metallolyase D 21.4 3.9E+02 0.0085 24.5 7.5 49 91-139 77-140 (265)
249 PRK15452 putative protease; Pr 21.3 3.6E+02 0.0078 27.8 7.7 56 252-314 47-107 (443)
250 TIGR01163 rpe ribulose-phospha 21.3 5.7E+02 0.012 22.5 8.5 46 253-298 68-113 (210)
251 TIGR00510 lipA lipoate synthas 21.2 5.1E+02 0.011 25.3 8.4 65 255-319 195-278 (302)
252 TIGR03127 RuMP_HxlB 6-phospho 21.0 1.1E+02 0.0023 26.8 3.4 24 89-112 87-110 (179)
253 PLN02801 beta-amylase 21.0 2.3E+02 0.0049 29.9 6.0 40 279-318 40-90 (517)
254 TIGR03884 sel_bind_Methan sele 20.8 2E+02 0.0044 22.3 4.3 39 110-158 25-63 (74)
255 PRK01033 imidazole glycerol ph 20.8 3.7E+02 0.0081 25.2 7.2 49 85-133 149-202 (258)
256 cd03756 proteasome_alpha_arche 20.7 87 0.0019 28.4 2.8 37 75-112 2-39 (211)
257 cd00086 homeodomain Homeodomai 20.7 2.9E+02 0.0063 18.9 5.1 20 24-43 2-21 (59)
258 PF03659 Glyco_hydro_71: Glyco 20.6 1.4E+02 0.0029 30.3 4.4 46 93-138 22-71 (386)
259 PRK05985 cytosine deaminase; P 20.4 1.7E+02 0.0037 29.0 5.1 60 73-132 205-270 (391)
260 PRK13210 putative L-xylulose 5 20.4 1.5E+02 0.0033 27.6 4.5 45 87-131 15-69 (284)
261 PF13653 GDPD_2: Glycerophosph 20.2 94 0.002 19.7 2.0 19 279-297 10-28 (30)
262 PRK08005 epimerase; Validated 20.2 6.8E+02 0.015 23.1 8.6 95 245-349 39-133 (210)
263 PLN02803 beta-amylase 20.2 2.5E+02 0.0055 29.8 6.2 40 279-318 110-160 (548)
264 cd08556 GDPD Glycerophosphodie 20.2 2E+02 0.0043 24.7 4.9 38 254-295 150-187 (189)
265 COG1671 Uncharacterized protei 20.1 1.2E+02 0.0026 26.8 3.3 23 90-112 14-36 (150)
266 COG2108 Uncharacterized conser 20.1 8.9E+02 0.019 24.3 11.2 149 43-316 36-193 (353)
No 1
>COG0613 Predicted metal-dependent phosphoesterases (PHP family) [General function prediction only]
Probab=100.00 E-value=3.5e-38 Score=298.59 Aligned_cols=250 Identities=35% Similarity=0.473 Sum_probs=223.8
Q ss_pred ceEEceeeeCcCCCCCCCHHHHHHHHHHcCCcEEEEecCCCCCCHHHHH-HHHHhcCCeEEEEEEEEeeeccCCCCCCCc
Q 018376 72 NVVFELHSHSNFSDGYLSPSKLVERAHCNGVKVLALTDHDTMSGIPEAI-ETARRFGMKIIPGVEISTIFCQRGSESEEP 150 (357)
Q Consensus 72 ~~~~DLH~HT~~SDG~~tp~elv~~A~~~Gl~~iaITDHdt~~g~~~~~-~~a~~~gi~vi~GiEis~~~~~~~~~~g~~ 150 (357)
||++||||||++|||.++|.+++++|++.|++++|||||||+.|+.++. ......++.+|||+|+++.+ .+..
T Consensus 1 ~~~~DLHvHSt~Sdg~~~p~~vv~~A~~~g~~vlAiTDHdt~~g~~~a~~~~~~~l~i~vipG~Ei~t~~------~~~~ 74 (258)
T COG0613 1 WMKADLHVHTTASDGGLTPREVVERAKAKGVDVLAITDHDTVRGLLEARRAAGLRLGITVIPGIEISTTW------GGHI 74 (258)
T ss_pred CcceeeeEecccCCCCCCHHHHHHHHHHcCCCEEEECCcccccccHHHHHHhhcCCCceeeccEEeeccc------CCeE
Confidence 6899999999999999999999999999999999999999999999997 55556889999999999998 6889
Q ss_pred EEEEEEeccCCCCchHHHHHHHHHHHHhHHHHHHHHHHHHHhCCCCCCHHHHHHHhCCCCCCChHHHHHHHHHcCccccH
Q 018376 151 VHILAYYSSCGPSKYEELENFLANIRDGRFLRAKDMILKLNKLKLPLKWEHVAKIAGKGVAPGRLHVARAMVEAGHVENL 230 (357)
Q Consensus 151 vHiLgy~~d~~~~~~~~l~~~l~~i~~~R~~r~~~~i~~L~~~g~~i~~e~v~~~a~~~~~~~~~hia~aLv~~g~~~~~ 230 (357)
+|+++++++.. ...+.+++.+.+..|.+|.+++.+++....++-.++.+...++.+ .+.+.|++..+++.++..+.
T Consensus 75 ih~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~h~~~~~~~~~~~~-~~~~~h~~~~~ve~~~~~~~ 150 (258)
T COG0613 75 IHILGLGIDIT---DEPLVEGLARQQLYREERLEEIKERLGKAIIPHPFEGARKLAGLG-AITRAHIARDAVEVGNASTR 150 (258)
T ss_pred EEEEeeccccc---chhhhhhhhhccccHHHHHHHHHHhCCccccCcchHHHHhcCCcc-cchhhhhhhhhhccccccch
Confidence 99999997642 345788899999999999999999999999999999888877644 46799999999999999999
Q ss_pred HHHHHHHhhCCCCcccCCCCCCHHHHHHHHHHcCCeEEeeCCCCCCCh-HHHHHHHHHcCCcEEEeecCCCcHHH-HHHH
Q 018376 231 KQAFARYLYDGGPAYSTGSEPLAEVAVQLIHRTGGLAVLAHPWALKNP-AAIIRKLKDVGLHGLEVYRSDGKLVD-VNFL 308 (357)
Q Consensus 231 ~~~f~~yl~~~~~~yv~~~~~~~eevI~~I~~aGGvaVLAHP~~~~~~-~~li~~l~~~GlDGIEv~~~~~~~~~-~~~~ 308 (357)
...|++|+..++++|+++.+.+.++.|..|+.+||++|+|||.++... ..++..+++.|.||+|+++.+..... ..+.
T Consensus 151 ~~~fn~~~~~~~~~~~~~~~~~~~~~i~~~~ga~g~~v~ahp~r~~~~~~~lv~~~~~~~~~~ie~~~~~~~~~~~~~~~ 230 (258)
T COG0613 151 QGVFNKYLKRGAPKYVPPEWADSEAHVGAIHGAGGTAVLAHPGRYDLSLKRLVEAFADHGGDGIEVIYGAISPNPREVLA 230 (258)
T ss_pred HHHHHHHHhccCcccCcccccCHHHHHHHHhhceeEEEeccccccccchhHHHHHHHhcCCCceEEecccCCcchHHHHH
Confidence 999999999999999999999999999999999999999999998764 67899999999999999999875443 5688
Q ss_pred HHHHhcCCceeecccccCCCCCCCCChh
Q 018376 309 EKIDNFLLLLCLRQISNCDCALYPYPWQ 336 (357)
Q Consensus 309 ~lA~~~~Ll~t~~~~~GSD~h~~~~~~~ 336 (357)
.++++++++.|. |||+| .+..|.
T Consensus 231 ~~~k~~~~l~s~----gs~fh-~~~~~~ 253 (258)
T COG0613 231 LLAKEFGLLASV----GSDFH-TPGDWI 253 (258)
T ss_pred HHHHHhhhhhcc----ccccc-CCCccc
Confidence 999999999986 99999 443443
No 2
>PRK09248 putative hydrolase; Validated
Probab=99.81 E-value=5.2e-19 Score=166.23 Aligned_cols=174 Identities=20% Similarity=0.305 Sum_probs=114.1
Q ss_pred ceEEceeeeCcCC-CCCCCHHHHHHHHHHcCCcEEEEecCCC-CCCH------HHHHHHH-HhcCCeEEEEEEEEeeecc
Q 018376 72 NVVFELHSHSNFS-DGYLSPSKLVERAHCNGVKVLALTDHDT-MSGI------PEAIETA-RRFGMKIIPGVEISTIFCQ 142 (357)
Q Consensus 72 ~~~~DLH~HT~~S-DG~~tp~elv~~A~~~Gl~~iaITDHdt-~~g~------~~~~~~a-~~~gi~vi~GiEis~~~~~ 142 (357)
.|++|+|+||.+| ||..++++++++|++.|++.+|||||+. ..+. ..+.++. +..+++++.|+|+......
T Consensus 2 ~~~~D~H~HT~~s~~~~~~~~e~v~~A~~~G~~~i~iTdH~~~~~~~~~~~~~~~~~~~~~~~~~i~il~GiE~~~~~~~ 81 (246)
T PRK09248 2 KYPVDTHTHTIASGHAYSTLHENAAEAKQKGLKLFAITDHGPDMPGAPHYWHFGNLRVLPRKVDGVGILRGIEANIKNYD 81 (246)
T ss_pred ccceEeCcCCCCCCCCCCCHHHHHHHHHHCCCCEEEECCCCCCcCCCCCHHHHHHHHHHHHhhcCCeEEEEEEeccccCC
Confidence 3689999999999 8999999999999999999999999985 3332 1122221 2368999999999764210
Q ss_pred CCCCCCCcEEEEEEeccCCCCchHHHHHHHHHHHHhHHHHHHHHHHHHHhCCCCCCHHHHHHHhCCCCCCChHHHHHHHH
Q 018376 143 RGSESEEPVHILAYYSSCGPSKYEELENFLANIRDGRFLRAKDMILKLNKLKLPLKWEHVAKIAGKGVAPGRLHVARAMV 222 (357)
Q Consensus 143 ~~~~~g~~vHiLgy~~d~~~~~~~~l~~~l~~i~~~R~~r~~~~i~~L~~~g~~i~~e~v~~~a~~~~~~~~~hia~aLv 222 (357)
+ .+ .+ ...+ +....+ .++..|..
T Consensus 82 -----~-~~---~~--------~~~~---------------------~~~~D~---------------vi~svH~~---- 104 (246)
T PRK09248 82 -----G-EI---DL--------PGDM---------------------LKKLDI---------------VIAGFHEP---- 104 (246)
T ss_pred -----C-cc---cC--------CHhH---------------------hhhCCE---------------EEEecccC----
Confidence 0 00 00 0000 000000 11111110
Q ss_pred HcCccccHHHHHHHHhhCCCCcccCCC-CCCHHHHHHHHHHcCCeEEeeCCCCCC---ChHHHHHHHHHcCCcEEEeecC
Q 018376 223 EAGHVENLKQAFARYLYDGGPAYSTGS-EPLAEVAVQLIHRTGGLAVLAHPWALK---NPAAIIRKLKDVGLHGLEVYRS 298 (357)
Q Consensus 223 ~~g~~~~~~~~f~~yl~~~~~~yv~~~-~~~~eevI~~I~~aGGvaVLAHP~~~~---~~~~li~~l~~~GlDGIEv~~~ 298 (357)
.+.+.. ....++++++| ++|++.|||||+++. ....++..+++.|+ +||++++
T Consensus 105 ---------------------~~~~~~~~~~~~~~i~~l-~~g~~~vLAHP~~~~~~~~~~~~~~~~~~~g~-~lEvN~~ 161 (246)
T PRK09248 105 ---------------------VFAPGDKETNTQALINAI-KNGRVDIIGHPGNPKYPIDIEAVVKAAKEHNV-ALEINNS 161 (246)
T ss_pred ---------------------ccCCcCHHHHHHHHHHHH-hcCCCCEEECcCCCCCcccHHHHHHHHHHhCC-EEEEECC
Confidence 000000 01246788889 899999999999754 23567788889996 9999886
Q ss_pred CC------cH-HHHHHHHHHHhcCCceeecccccCCCC
Q 018376 299 DG------KL-VDVNFLEKIDNFLLLLCLRQISNCDCA 329 (357)
Q Consensus 299 ~~------~~-~~~~~~~lA~~~~Ll~t~~~~~GSD~h 329 (357)
.. .. ....+.++|.++|+..+. |||+|
T Consensus 162 ~l~~~~~g~~~~~~~~~~~~~~~g~~~~~----gSDAH 195 (246)
T PRK09248 162 SFGHSRKGSEDNCRAIAALCKKAGVWVAL----GSDAH 195 (246)
T ss_pred CCccCCCCCcChHHHHHHHHHHcCCeEEE----eCCCC
Confidence 43 11 234688999999999886 99999
No 3
>PRK00448 polC DNA polymerase III PolC; Validated
Probab=99.78 E-value=7.2e-20 Score=205.21 Aligned_cols=207 Identities=25% Similarity=0.340 Sum_probs=143.6
Q ss_pred CceEEceeeeCcCC--CCCCCHHHHHHHHHHcCCcEEEEecCCCCCCHHHHHHHHHhcCCeEEEEEEEEeeeccCCCCCC
Q 018376 71 NNVVFELHSHSNFS--DGYLSPSKLVERAHCNGVKVLALTDHDTMSGIPEAIETARRFGMKIIPGVEISTIFCQRGSESE 148 (357)
Q Consensus 71 ~~~~~DLH~HT~~S--DG~~tp~elv~~A~~~Gl~~iaITDHdt~~g~~~~~~~a~~~gi~vi~GiEis~~~~~~~~~~g 148 (357)
...++|||+||++| ||.++|++++++|+++|+++||||||+++.|++++.+++++.||++|+|+|+++.+ .
T Consensus 331 ~~KrvdLH~HT~~S~~Dg~~~~~elv~~A~~~G~~aIAITDH~~v~~~p~a~~~~k~~gikvI~GvE~~~~~------~- 403 (1437)
T PRK00448 331 EEKRVELHLHTKMSTMDAIPSVSELVKRAAKWGHKAIAITDHGVVQAFPEAYNAAKKAGIKVIYGVEANLVD------D- 403 (1437)
T ss_pred ccceEEecccccCcccccCCCHHHHHHHHHHCCCCEEEEecCCCCcCHHHHHHHHHhcCCceEeeeeEEEec------c-
Confidence 45689999999999 99999999999999999999999999999999999999999999999999999975 2
Q ss_pred CcEEEEEEeccCCCCchHHHHHHHHHHHHhHHHHHHHHHHHHHhCCCCCCHHHHHHHhCCCCCCChHHHHHHHHHcCccc
Q 018376 149 EPVHILAYYSSCGPSKYEELENFLANIRDGRFLRAKDMILKLNKLKLPLKWEHVAKIAGKGVAPGRLHVARAMVEAGHVE 228 (357)
Q Consensus 149 ~~vHiLgy~~d~~~~~~~~l~~~l~~i~~~R~~r~~~~i~~L~~~g~~i~~e~v~~~a~~~~~~~~~hia~aLv~~g~~~ 228 (357)
.+|+ +|+.+. ..|. ..+.++-.++.-|++..++++.+++. ++++.|.+.
T Consensus 404 -~~~i-v~~~~~-----~~L~------------~~~~VVfDLETTGL~~~~deIIEIgA------------V~V~~G~ii 452 (1437)
T PRK00448 404 -GVPI-VYNEVD-----RDLK------------DATYVVFDVETTGLSAVYDEIIEIGA------------VKIKNGEII 452 (1437)
T ss_pred -ceeE-EecCCc-----hhhc------------cCcEEEEEhhhcCCCCchhhhheeee------------EEEeCCeEe
Confidence 2455 587541 1221 11233344555677777776655532 122233221
Q ss_pred cHHHHHHHHhhCCCC-------------cccCCCCCCHHHHHHHHHH-cCCeEEeeCCCCCCCh--HHH-----HHHHHH
Q 018376 229 NLKQAFARYLYDGGP-------------AYSTGSEPLAEVAVQLIHR-TGGLAVLAHPWALKNP--AAI-----IRKLKD 287 (357)
Q Consensus 229 ~~~~~f~~yl~~~~~-------------~yv~~~~~~~eevI~~I~~-aGGvaVLAHP~~~~~~--~~l-----i~~l~~ 287 (357)
+.|+.|+..+.+ .++. ..++++++++.+++ +||.+++|||..+... ... ++.+..
T Consensus 453 ---e~F~~~V~P~~~I~~~~~~LTGIT~e~L~-~aps~~EaL~~f~~figg~vLVAHNa~FD~~fL~~~l~rlgl~~l~~ 528 (1437)
T PRK00448 453 ---DKFEFFIKPGHPLSAFTTELTGITDDMVK-DAPSIEEVLPKFKEFCGDSILVAHNASFDVGFINTNYEKLGLEKIKN 528 (1437)
T ss_pred ---eeEEEEECCCCCCCHHHHHHhCCCHHHHc-CCCCHHHHHHHHHHHhCCCEEEEeCccccHHHHHHHHHHcCCccccc
Confidence 223334433321 2222 45789999999999 7999999999865432 111 112334
Q ss_pred cCCcEEEeecCCCcH-HHHHHHHHHHhcCCcee
Q 018376 288 VGLHGLEVYRSDGKL-VDVNFLEKIDNFLLLLC 319 (357)
Q Consensus 288 ~GlDGIEv~~~~~~~-~~~~~~~lA~~~~Ll~t 319 (357)
.++|++|+++..++. ....+..+|+.+||..+
T Consensus 529 ~~IDTLelar~l~p~~k~~kL~~LAk~lGL~~~ 561 (1437)
T PRK00448 529 PVIDTLELSRFLYPELKSHRLNTLAKKFGVELE 561 (1437)
T ss_pred cceeHHHHHHHHcCccccccHHHHHHHcCCCCC
Confidence 567899988764432 22358899999998864
No 4
>PF02811 PHP: PHP domain; InterPro: IPR004013 The PHP (Polymerase and Histidinol Phosphatase) domain is a putative phosphoesterase domain. This family is often associated with an N-terminal region IPR003141 from INTERPRO.; GO: 0003824 catalytic activity; PDB: 2WJE_A 3QY8_A 2WJD_A 2WJF_A 1PB0_B 1M68_A 1M65_A 3E38_B 2W9M_A 3E0F_A ....
Probab=99.73 E-value=7.9e-17 Score=141.47 Aligned_cols=78 Identities=36% Similarity=0.674 Sum_probs=68.2
Q ss_pred EceeeeCcCC--CCCCCHHHHHHHHHHcCCcEEEEecCCCCCCHHHHHHHHHhcCCeEEEEEEEEeeeccCCCCCCCcEE
Q 018376 75 FELHSHSNFS--DGYLSPSKLVERAHCNGVKVLALTDHDTMSGIPEAIETARRFGMKIIPGVEISTIFCQRGSESEEPVH 152 (357)
Q Consensus 75 ~DLH~HT~~S--DG~~tp~elv~~A~~~Gl~~iaITDHdt~~g~~~~~~~a~~~gi~vi~GiEis~~~~~~~~~~g~~vH 152 (357)
|||||||.|| ||..+|++++++|++.|++.+|||||+++.+++++.+.+++.+|.+++|+|+.... ....+|
T Consensus 1 iDlH~HT~~s~~dg~~~~~e~v~~A~~~Gl~~i~iTDH~~~~~~~~~~~~~~~~~i~vi~G~E~~~~~------~~~~~~ 74 (175)
T PF02811_consen 1 IDLHVHTKYSILDGKDSPEEYVEQAKEKGLDAIAITDHNNFAGYPDFYKEAKKKGIKVIPGVEIESFE------RNDPFD 74 (175)
T ss_dssp EEEEB--TTTSSTSSSSHHHHHHHHHHTTESEEEEEEETTTTTHHHHHHHHHHTTSEEEEEEEESHHH------HTTTEE
T ss_pred CCccccccCcchhhcCCHHHHHHHHHHcCCCEEEEcCCcccccchHHHHHHHhcCCceEEeEeecccc------ccchhH
Confidence 7999999999 99999999999999999999999999999999999999999999999999995433 355677
Q ss_pred EEEEec
Q 018376 153 ILAYYS 158 (357)
Q Consensus 153 iLgy~~ 158 (357)
++.+..
T Consensus 75 ~~i~~~ 80 (175)
T PF02811_consen 75 YIIGSV 80 (175)
T ss_dssp EEEEEG
T ss_pred HHHHHh
Confidence 777754
No 5
>smart00481 POLIIIAc DNA polymerase alpha chain like domain. DNA polymerase alpha chain like domain, incl. family of hypothetical proteins
Probab=99.72 E-value=2.3e-17 Score=124.75 Aligned_cols=63 Identities=44% Similarity=0.699 Sum_probs=61.6
Q ss_pred ceeeeCcCC--CCCCCHHHHHHHHHHcCCcEEEEecCCCCCCHHHHHHHHHhcCCeEEEEEEEEe
Q 018376 76 ELHSHSNFS--DGYLSPSKLVERAHCNGVKVLALTDHDTMSGIPEAIETARRFGMKIIPGVEIST 138 (357)
Q Consensus 76 DLH~HT~~S--DG~~tp~elv~~A~~~Gl~~iaITDHdt~~g~~~~~~~a~~~gi~vi~GiEis~ 138 (357)
|||+||.|| ||..+|++++++|+++|++.++||||+++.|+.++++++++.|+++|||+|+++
T Consensus 1 dlH~Ht~~S~~~~~~~~~~~~~~a~~~g~~~v~iTDh~~~~~~~~~~~~~~~~gi~~i~G~E~~~ 65 (67)
T smart00481 1 DLHVHSDYSLLDGALSPEELVKRAKELGLKAIAITDHGNLFGAVEFYKAAKKAGIKPIIGLEANI 65 (67)
T ss_pred CCccccCCccccccCCHHHHHHHHHHcCCCEEEEeeCCcccCHHHHHHHHHHcCCeEEEEEEEEe
Confidence 799999999 999999999999999999999999999999999999999999999999999986
No 6
>PRK08392 hypothetical protein; Provisional
Probab=99.71 E-value=9.2e-17 Score=148.32 Aligned_cols=168 Identities=16% Similarity=0.228 Sum_probs=109.5
Q ss_pred EceeeeCcCCCCCCCHHHHHHHHHHcCCcEEEEecCCCCC---CH----HHHHHHHHhcCCeEEEEEEEEeeeccCCCCC
Q 018376 75 FELHSHSNFSDGYLSPSKLVERAHCNGVKVLALTDHDTMS---GI----PEAIETARRFGMKIIPGVEISTIFCQRGSES 147 (357)
Q Consensus 75 ~DLH~HT~~SDG~~tp~elv~~A~~~Gl~~iaITDHdt~~---g~----~~~~~~a~~~gi~vi~GiEis~~~~~~~~~~ 147 (357)
+|+|+||.+|||..++++++++|.++|++.+|||||..+. .+ .++.++.++.++.++.|+|+.... .
T Consensus 1 ~D~H~HT~~sd~~~~~~e~v~~A~~~Gl~~i~iTdH~~~~~~~~~~~y~~~i~~l~~~~~i~il~GiE~~~~~------~ 74 (215)
T PRK08392 1 MDLHTHTVYSDGIGSVRDNIAEAERKGLRLVGISDHIHYFTPSKFNAYINEIRQWGEESEIVVLAGIEANITP------N 74 (215)
T ss_pred CccccCCCCcCCcCCHHHHHHHHHHcCCCEEEEccCCCccchhhHHHHHHHHHHHhhccCceEEEeEEeeecC------C
Confidence 5999999999999999999999999999999999998652 11 233344445689999999998643 1
Q ss_pred CCcEEEEEEeccCCCCchHHHHHHHHHHHHhHHHHHHHHHHHHHhCCCCCCHHHHHHHhCCCCCCChHHHHHHHHHcCcc
Q 018376 148 EEPVHILAYYSSCGPSKYEELENFLANIRDGRFLRAKDMILKLNKLKLPLKWEHVAKIAGKGVAPGRLHVARAMVEAGHV 227 (357)
Q Consensus 148 g~~vHiLgy~~d~~~~~~~~l~~~l~~i~~~R~~r~~~~i~~L~~~g~~i~~e~v~~~a~~~~~~~~~hia~aLv~~g~~ 227 (357)
+. + ...++ +....+ .++..|.. .
T Consensus 75 ~~---------~-------~~~~~------------------~~~~D~---------------vI~SvH~~--------~ 97 (215)
T PRK08392 75 GV---------D-------ITDDF------------------AKKLDY---------------VIASVHEW--------F 97 (215)
T ss_pred cc---------h-------hHHHH------------------HhhCCE---------------EEEEeecC--------c
Confidence 00 0 00000 001111 23433320 0
Q ss_pred ccHHHHHHHHhhCCCCcccCCCCCCHHHHHHHHHHcCCeEEeeCCCCCC---------ChHHHHHHHHHcCCcEEEeecC
Q 018376 228 ENLKQAFARYLYDGGPAYSTGSEPLAEVAVQLIHRTGGLAVLAHPWALK---------NPAAIIRKLKDVGLHGLEVYRS 298 (357)
Q Consensus 228 ~~~~~~f~~yl~~~~~~yv~~~~~~~eevI~~I~~aGGvaVLAHP~~~~---------~~~~li~~l~~~GlDGIEv~~~ 298 (357)
.. ..++.|+ +.+++++ +.+.+-|||||+... ...++++.+++.| -.+|+...
T Consensus 98 ~~--~~~~~Y~---------------~~~~~~~-~~~~~dvlgH~d~~~~~~~~~~~~~~~~i~~~~~~~g-~~lEiNt~ 158 (215)
T PRK08392 98 GR--PEHHEYI---------------ELVKLAL-MDENVDIIGHFGNSFPYIGYPSEEELKEILDLAEAYG-KAFEISSR 158 (215)
T ss_pred CC--cHHHHHH---------------HHHHHHH-hcCCCCEEeCCCccccCCCCchHHHHHHHHHHHHHhC-CEEEEeCC
Confidence 00 0112222 4566666 668999999997321 1245567777888 89999874
Q ss_pred CCcHHHHHHHHHHHhcCCceeecccccCCCC
Q 018376 299 DGKLVDVNFLEKIDNFLLLLCLRQISNCDCA 329 (357)
Q Consensus 299 ~~~~~~~~~~~lA~~~~Ll~t~~~~~GSD~h 329 (357)
+.... ..+.++|+++|...|. |||+|
T Consensus 159 ~~~p~-~~~l~~~~~~G~~~~i----gSDAH 184 (215)
T PRK08392 159 YRVPD-LEFIRECIKRGIKLTF----ASDAH 184 (215)
T ss_pred CCCCC-HHHHHHHHHcCCEEEE----eCCCC
Confidence 33222 2478999999988775 99999
No 7
>TIGR00375 conserved hypothetical protein TIGR00375. The member of this family from Methanococcus jannaschii, MJ0043, is considerably longer and appears to contain an intein N-terminal to the region of homology.
Probab=99.65 E-value=1.9e-15 Score=149.56 Aligned_cols=169 Identities=17% Similarity=0.183 Sum_probs=112.1
Q ss_pred EceeeeCcCC---CCCCCHHHHHHHHHHcCCcEEEEecCCCCCCHHHHHHHH----HhcCCe------EEEEEEEEeeec
Q 018376 75 FELHSHSNFS---DGYLSPSKLVERAHCNGVKVLALTDHDTMSGIPEAIETA----RRFGMK------IIPGVEISTIFC 141 (357)
Q Consensus 75 ~DLH~HT~~S---DG~~tp~elv~~A~~~Gl~~iaITDHdt~~g~~~~~~~a----~~~gi~------vi~GiEis~~~~ 141 (357)
+|||+||.+| +..++|+.|+++|..+|++.||+|||++.. ..+.... ++.|+. +++|+|+.+
T Consensus 2 aDLHIHs~~S~a~~~~m~~~~i~~~a~~KGldvIg~~D~~~p~--~~~~~~~~~~~~~~Gl~~~~ei~~~~~~ei~~--- 76 (374)
T TIGR00375 2 ADLHIHIGRTRGAKTLTLDRILVEQSRLKGLELLGIIDCHSPL--EEGISSGKRELDGGGIRYRSELSIYDEACVDE--- 76 (374)
T ss_pred CccceecCcCCCCCccCCHHHHHHHHHhcCCEEEEEecCCCch--HHHHhhcccccCCCCeeeccceeecccccccc---
Confidence 6999999998 667999999999999999999999999984 2222222 345666 888888754
Q ss_pred cCCCCCCCcEEEEEEeccCCCCchHHHHHHHHHHHHhHHHHHHHHHHHHHhCCCCCCHHHHHHHhCCCCCCChHHHHHHH
Q 018376 142 QRGSESEEPVHILAYYSSCGPSKYEELENFLANIRDGRFLRAKDMILKLNKLKLPLKWEHVAKIAGKGVAPGRLHVARAM 221 (357)
Q Consensus 142 ~~~~~~g~~vHiLgy~~d~~~~~~~~l~~~l~~i~~~R~~r~~~~i~~L~~~g~~i~~e~v~~~a~~~~~~~~~hia~aL 221 (357)
.++||+|+|+.+ ++.+.++-+.+.. ++. ..++
T Consensus 77 ------~~~VH~L~~fp~-----l~~a~~f~~~l~~-----------~l~-------------------~~~r------- 108 (374)
T TIGR00375 77 ------SGPIHVLLFMPT-----LADMKQFSNWLSA-----------RLK-------------------NIGR------- 108 (374)
T ss_pred ------CCCceEEEECCC-----HHHHHHHHHHHHh-----------hCC-------------------CCCC-------
Confidence 457999999964 4444333222110 000 1111
Q ss_pred HHcCccccHHHHHHHHhhCCCCcccCCCCCCHHHHHHHHHHcCCeEEeeCCCCCCChHHHHHHH----HHcC--CcEEEe
Q 018376 222 VEAGHVENLKQAFARYLYDGGPAYSTGSEPLAEVAVQLIHRTGGLAVLAHPWALKNPAAIIRKL----KDVG--LHGLEV 295 (357)
Q Consensus 222 v~~g~~~~~~~~f~~yl~~~~~~yv~~~~~~~eevI~~I~~aGGvaVLAHP~~~~~~~~li~~l----~~~G--lDGIEv 295 (357)
|. ....+..++++.+++.||++|.||+|+.... ++..+ ...| -|+||+
T Consensus 109 ---------------------p~---q~~~~~~~~~~~v~~~gGi~iPAHiftP~~S--l~g~~~~~~~~~g~~p~avEl 162 (374)
T TIGR00375 109 ---------------------SS---QRIYETGLNLEKVQDYGGLFGPAHIFTPWTS--LYKSGDSSSDCYVFDPDFVEL 162 (374)
T ss_pred ---------------------CC---eeeecHHHHHHHhhcCCeEEEeCCCCCCccc--ccccccchhhhhcCCCceEEE
Confidence 10 0113677889999999999999999974321 11110 0123 299999
Q ss_pred ecCCCcHHHHHHHHHHHhcCCceeecccccCCCC
Q 018376 296 YRSDGKLVDVNFLEKIDNFLLLLCLRQISNCDCA 329 (357)
Q Consensus 296 ~~~~~~~~~~~~~~lA~~~~Ll~t~~~~~GSD~h 329 (357)
..+..+. ++..++...++.... +||+|
T Consensus 163 glS~d~~---ma~~~s~L~~~~~IS----nSDAH 189 (374)
T TIGR00375 163 GLSADTD---MADHISELNDYPFLT----NSDAH 189 (374)
T ss_pred eccCCHH---HHHHhHHhcCCCeEe----ecCCC
Confidence 9987642 234666666666543 99999
No 8
>PRK09532 DNA polymerase III subunit alpha; Reviewed
Probab=99.64 E-value=6.6e-15 Score=159.79 Aligned_cols=100 Identities=30% Similarity=0.383 Sum_probs=81.9
Q ss_pred eEEceeeeCcCC--CCCCCHHHHHHHHHHcCCcEEEEecCCCCCCHHHHHHHHHhcCCeEEEEEEEEeeeccCC-CCCCC
Q 018376 73 VVFELHSHSNFS--DGYLSPSKLVERAHCNGVKVLALTDHDTMSGIPEAIETARRFGMKIIPGVEISTIFCQRG-SESEE 149 (357)
Q Consensus 73 ~~~DLH~HT~~S--DG~~tp~elv~~A~~~Gl~~iaITDHdt~~g~~~~~~~a~~~gi~vi~GiEis~~~~~~~-~~~g~ 149 (357)
.++|||+||.|| ||..+|++++++|++.|++++||||||++.|+.++.++|++.||++|+|+|+++...... .....
T Consensus 2 ~Fv~LH~HS~ySlLdg~~~~~elv~~A~~~G~~aiAiTDh~~~~g~~~f~~~~~~~gik~I~G~E~~~~~~~~~~~~~~~ 81 (874)
T PRK09532 2 SFVGLHIHSDYSLLDGASQLPALVDRAIELGMPAIALTDHGVMYGAIELLKVCRNKGIKPIIGNEMYVINGDIEKQKRRR 81 (874)
T ss_pred CccccccCCcCchhhccCCHHHHHHHHHHCCCCEEEEecCCChhhHHHHHHHHHHcCCeEEEEEEEEecCCCcccccccc
Confidence 478999999999 999999999999999999999999999999999999999999999999999998642110 00122
Q ss_pred cEEEEEEeccCCCCchHHHHHHHHH
Q 018376 150 PVHILAYYSSCGPSKYEELENFLAN 174 (357)
Q Consensus 150 ~vHiLgy~~d~~~~~~~~l~~~l~~ 174 (357)
..|++.+..+ ..+|.+|.++.+.
T Consensus 82 ~~~lvLLAkN--~~GY~NL~kL~S~ 104 (874)
T PRK09532 82 KYHQVVLAKN--TQGYKNLVKLTTI 104 (874)
T ss_pred cceeEEEecC--HHHHHHHHHHHhH
Confidence 4688888643 4567777766554
No 9
>PRK07328 histidinol-phosphatase; Provisional
Probab=99.64 E-value=4.8e-15 Score=141.25 Aligned_cols=184 Identities=22% Similarity=0.309 Sum_probs=111.8
Q ss_pred ceEEceeeeCcCC-CCCCCHHHHHHHHHHcCCcEEEEecCCCCC---------C-------HHHH----HHHHHh-cCCe
Q 018376 72 NVVFELHSHSNFS-DGYLSPSKLVERAHCNGVKVLALTDHDTMS---------G-------IPEA----IETARR-FGMK 129 (357)
Q Consensus 72 ~~~~DLH~HT~~S-DG~~tp~elv~~A~~~Gl~~iaITDHdt~~---------g-------~~~~----~~~a~~-~gi~ 129 (357)
+|.+|+|+||.|| ||..++++++++|.++|++.+|||||.... . +.+. .++.++ .+|+
T Consensus 1 ~m~~D~H~HT~~s~~~~~~~ee~v~~A~~~Gl~~i~~TdH~~~~~~~~~~~~~~~~~~~~~~~~y~~~i~~l~~~y~~i~ 80 (269)
T PRK07328 1 KMLVDYHMHTPLCGHAVGTPEEYVQAARRAGLKEIGFTDHLPMYFLPPEWRDPGLAMRLEELPFYVSEVERLRARFPDLY 80 (269)
T ss_pred CCceeeccCCCCCCCCCCCHHHHHHHHHHCCCCEEEEecCCCCCCcCcccccccccccHHHHHHHHHHHHHHHHHcCCCe
Confidence 3678999999999 999999999999999999999999996541 0 1111 122222 3699
Q ss_pred EEEEEEEEeeeccCCCCCCCcEEEEEEeccCCCCchHHHHHHHHHHHHhHHHHHHHHHHHHHhCCCCCCHHHHHHHhCCC
Q 018376 130 IIPGVEISTIFCQRGSESEEPVHILAYYSSCGPSKYEELENFLANIRDGRFLRAKDMILKLNKLKLPLKWEHVAKIAGKG 209 (357)
Q Consensus 130 vi~GiEis~~~~~~~~~~g~~vHiLgy~~d~~~~~~~~l~~~l~~i~~~R~~r~~~~i~~L~~~g~~i~~e~v~~~a~~~ 209 (357)
++.|+|+..... . .+.+.+++ +. +++++
T Consensus 81 Il~GiE~~~~~~--------------~--------~~~~~~~l------------------~~--~~~D~---------- 108 (269)
T PRK07328 81 VRLGIEADYHPG--------------T--------EEFLERLL------------------EA--YPFDY---------- 108 (269)
T ss_pred EEEEEEecccCC--------------c--------HHHHHHHH------------------Hh--CCCCe----------
Confidence 999999985320 0 11111111 11 11111
Q ss_pred CCCChHHHHHH-------HHHcCccccHHHHHHHHhhCCCCcccCCCCCCHHHHHHHHHHcCCeEEeeCCCCCC-----C
Q 018376 210 VAPGRLHVARA-------MVEAGHVENLKQAFARYLYDGGPAYSTGSEPLAEVAVQLIHRTGGLAVLAHPWALK-----N 277 (357)
Q Consensus 210 ~~~~~~hia~a-------Lv~~g~~~~~~~~f~~yl~~~~~~yv~~~~~~~eevI~~I~~aGGvaVLAHP~~~~-----~ 277 (357)
.++..|...- ....--..+..++++.|+ +.+++++. .|.+-|||||...+ .
T Consensus 109 -vigSvH~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~---------------~~~~~~~~-~~~~dvlgH~d~i~~~~~~~ 171 (269)
T PRK07328 109 -VIGSVHYLGAWGFDNPDFVAEYEERDLDELYRRYF---------------ALVEQAAR-SGLFDIIGHPDLIKKFGHRP 171 (269)
T ss_pred -EEEEEeecCCcCCCChhHHHHHhcCCHHHHHHHHH---------------HHHHHHHH-cCCCCEeeCccHHHHcCCCC
Confidence 1222222100 000000012233444444 35667774 68999999997422 1
Q ss_pred ---h----HHHHHHHHHcCCcEEEeecCCC--c----HHHHHHHHHHHhcCCceeecccccCCCC
Q 018376 278 ---P----AAIIRKLKDVGLHGLEVYRSDG--K----LVDVNFLEKIDNFLLLLCLRQISNCDCA 329 (357)
Q Consensus 278 ---~----~~li~~l~~~GlDGIEv~~~~~--~----~~~~~~~~lA~~~~Ll~t~~~~~GSD~h 329 (357)
. +++++.+++.| -+||+..+.. . -....+.++|+++|...|- |||+|
T Consensus 172 ~~~~~~~~~~il~~~~~~g-~~lEiNt~~~r~~~~~~yp~~~il~~~~~~g~~iti----gSDAH 231 (269)
T PRK07328 172 REDLTELYEEALDVIAAAG-LALEVNTAGLRKPVGEIYPSPALLRACRERGIPVVL----GSDAH 231 (269)
T ss_pred chhHHHHHHHHHHHHHHcC-CEEEEEchhhcCCCCCCCCCHHHHHHHHHcCCCEEE----eCCCC
Confidence 1 45667778888 8999988521 1 0113589999999998875 99999
No 10
>PRK05672 dnaE2 error-prone DNA polymerase; Validated
Probab=99.63 E-value=6.6e-15 Score=162.29 Aligned_cols=118 Identities=33% Similarity=0.447 Sum_probs=97.8
Q ss_pred eEEceeeeCcCC--CCCCCHHHHHHHHHHcCCcEEEEecCCCCCCHHHHHHHHHhcCCeEEEEEEEEeeeccCCCCCCCc
Q 018376 73 VVFELHSHSNFS--DGYLSPSKLVERAHCNGVKVLALTDHDTMSGIPEAIETARRFGMKIIPGVEISTIFCQRGSESEEP 150 (357)
Q Consensus 73 ~~~DLH~HT~~S--DG~~tp~elv~~A~~~Gl~~iaITDHdt~~g~~~~~~~a~~~gi~vi~GiEis~~~~~~~~~~g~~ 150 (357)
.++||||||.|| ||.++|++++++|++.|++++||||||++.|+.++.++|++.||++|+|+|+++.+.. .+..
T Consensus 4 ~fv~LHvHT~ySlLdg~~~~~elv~~A~~~G~~avAiTDh~~l~g~~~f~~~~~~~gIkpI~G~Ei~~~~~~----~~~~ 79 (1046)
T PRK05672 4 PYAELHCHSNFSFLDGASHPEELVERAARLGLRALAITDECGLAGVVRAAEAAKELGLRLVIGAELSLGPDP----DPGG 79 (1046)
T ss_pred ceeeccccccCcccccCCCHHHHHHHHHHcCCCEEEEEeCCcchhHHHHHHHHHHCCCEEEEEEEEEEecCC----CCCC
Confidence 479999999999 9999999999999999999999999999999999999999999999999999986411 2346
Q ss_pred EEEEEEeccCCCCchHHHHHHHHHHHHhHHHHHHHHHHHHHhCCCCCCHHHHHHHhC
Q 018376 151 VHILAYYSSCGPSKYEELENFLANIRDGRFLRAKDMILKLNKLKLPLKWEHVAKIAG 207 (357)
Q Consensus 151 vHiLgy~~d~~~~~~~~l~~~l~~i~~~R~~r~~~~i~~L~~~g~~i~~e~v~~~a~ 207 (357)
+|+++|..+ ..+|.+|.++.+..+..+. ..+..++++++.++..
T Consensus 80 ~hllllAkn--~~Gy~nL~kL~S~a~~~~~-----------~~~p~i~~e~L~~~~~ 123 (1046)
T PRK05672 80 PHLLVLARD--REGYGRLSRLITRARLRAG-----------KGEYRLDLDDLAEPAG 123 (1046)
T ss_pred ceEEEEEcC--hHHHHHHHHHHHHHHHhCC-----------CCCccccHHHHHhhcC
Confidence 899999865 4577777777665543211 2457799999987753
No 11
>PRK07135 dnaE DNA polymerase III DnaE; Validated
Probab=99.57 E-value=5.1e-15 Score=161.23 Aligned_cols=91 Identities=25% Similarity=0.413 Sum_probs=82.2
Q ss_pred EEceeeeCcCC--CCCCCHHHHHHHHHHcCCcEEEEecCCCCCCHHHHHHHHHhcCCeEEEEEEEEeeeccCCCCCCCcE
Q 018376 74 VFELHSHSNFS--DGYLSPSKLVERAHCNGVKVLALTDHDTMSGIPEAIETARRFGMKIIPGVEISTIFCQRGSESEEPV 151 (357)
Q Consensus 74 ~~DLH~HT~~S--DG~~tp~elv~~A~~~Gl~~iaITDHdt~~g~~~~~~~a~~~gi~vi~GiEis~~~~~~~~~~g~~v 151 (357)
++||||||.|| ||.++|++++++|++.|++++||||||++.|+.++.++|++.||++|+|+|+++. ...+
T Consensus 3 fv~LHvHS~ySlLDg~~~~~elv~~Ak~~G~~avAITDh~~l~G~~~f~~~a~~~gIkpIiG~Ei~~~--------~~~l 74 (973)
T PRK07135 3 LINLHTNTEYSFLSSTIKLDSLIKYAKENNLKTLVLTDHNNMFGVPKFYKLCKKNNIKPIIGLDLEVE--------NFRF 74 (973)
T ss_pred ccccccCccCcccccCCCHHHHHHHHHHcCCCEEEEecCCcHHhHHHHHHHHHHcCCeEEEeEEEEec--------CcEE
Confidence 78999999999 9999999999999999999999999999999999999999999999999999874 2468
Q ss_pred EEEEEeccCCCCchHHHHHHHHHHH
Q 018376 152 HILAYYSSCGPSKYEELENFLANIR 176 (357)
Q Consensus 152 HiLgy~~d~~~~~~~~l~~~l~~i~ 176 (357)
|+|+... .+|.+|.++.+...
T Consensus 75 ~LLAkn~----~GY~nL~kL~S~~~ 95 (973)
T PRK07135 75 ILLAKNY----SGYKLLNELSSKKS 95 (973)
T ss_pred EEEECCH----HHHHHHHHHHHHHh
Confidence 8888863 46999998877543
No 12
>PRK05673 dnaE DNA polymerase III subunit alpha; Validated
Probab=99.54 E-value=1.5e-13 Score=152.66 Aligned_cols=100 Identities=28% Similarity=0.349 Sum_probs=82.6
Q ss_pred EEceeeeCcCC--CCCCCHHHHHHHHHHcCCcEEEEecCCCCCCHHHHHHHHHhcCCeEEEEEEEEeeeccC-C-CCCCC
Q 018376 74 VFELHSHSNFS--DGYLSPSKLVERAHCNGVKVLALTDHDTMSGIPEAIETARRFGMKIIPGVEISTIFCQR-G-SESEE 149 (357)
Q Consensus 74 ~~DLH~HT~~S--DG~~tp~elv~~A~~~Gl~~iaITDHdt~~g~~~~~~~a~~~gi~vi~GiEis~~~~~~-~-~~~g~ 149 (357)
+++||+||.|| ||.++|++++++|++.|++++|||||+++.|+.++.+.|++.||++|+|+|+++.+..+ + ...+.
T Consensus 2 fv~LHvHS~ySlLdg~~~i~elv~~A~e~G~~avAiTDH~~l~g~~~f~~~a~~~gIkpIiG~Ei~~~~~~~~~~~~~~~ 81 (1135)
T PRK05673 2 FVHLHVHSEYSLLDGAAKIKPLVKKAAELGMPAVALTDHGNLFGAVEFYKAAKGAGIKPIIGCEAYVAPEKKDDVSGGGA 81 (1135)
T ss_pred cccceecccCchhhhcCCHHHHHHHHHHcCCCEEEEEcCCccHHHHHHHHHHHHcCCeEEEEEEEEecCCcccccccccC
Confidence 58999999999 99999999999999999999999999999999999999999999999999999865211 0 00122
Q ss_pred cEEEEEEeccCCCCchHHHHHHHHHH
Q 018376 150 PVHILAYYSSCGPSKYEELENFLANI 175 (357)
Q Consensus 150 ~vHiLgy~~d~~~~~~~~l~~~l~~i 175 (357)
..|++.+..+ ..+|.+|.++.+..
T Consensus 82 ~~~l~llAkn--~~Gy~nL~kL~S~~ 105 (1135)
T PRK05673 82 YTHLTLLAKN--ETGYRNLFKLSSRA 105 (1135)
T ss_pred CCceEEEecC--HHHHHHHHHHHHHH
Confidence 3588888643 46788887776553
No 13
>PRK00912 ribonuclease P protein component 3; Provisional
Probab=99.52 E-value=1.7e-13 Score=128.24 Aligned_cols=161 Identities=20% Similarity=0.280 Sum_probs=106.0
Q ss_pred ceEEceeeeCcCCCCCCCHHHHHHHHHHcCCcEEEEecCCCCCC-HHHHHHHHHhcCCeEEEEEEEEeeeccCCCCCCCc
Q 018376 72 NVVFELHSHSNFSDGYLSPSKLVERAHCNGVKVLALTDHDTMSG-IPEAIETARRFGMKIIPGVEISTIFCQRGSESEEP 150 (357)
Q Consensus 72 ~~~~DLH~HT~~SDG~~tp~elv~~A~~~Gl~~iaITDHdt~~g-~~~~~~~a~~~gi~vi~GiEis~~~~~~~~~~g~~ 150 (357)
+|++|+|+|| .+||..++++++++|.++|++.+|||||..... .....+ .-.+|.++.|+|+....
T Consensus 1 ~m~~DlHvHt-~~d~~~~~~e~i~~A~~~Gl~~i~itdH~~~~~~~~~~~~--~~~~i~Il~GiEi~~~~---------- 67 (237)
T PRK00912 1 MKFYDLNVHA-VPDGYDTVLRLISEASHLGYSGIALSNHSDKYPESKPELE--DLLGFEIFRGVEIVASN---------- 67 (237)
T ss_pred CCceEeccCC-CCCCcchHHHHHHHHHHCCCCEEEEecCcccccchhHHHH--HhcCCcEEeeEEEecCC----------
Confidence 4678999999 479999999999999999999999999987532 221111 11389999999996422
Q ss_pred EEEEEEeccCCCCchHHHHHHHHHHHHhHHHHHHHHHHHHHhCCCCCCHHHHHHHhCCCCCCChHHHHHHHHHcCccccH
Q 018376 151 VHILAYYSSCGPSKYEELENFLANIRDGRFLRAKDMILKLNKLKLPLKWEHVAKIAGKGVAPGRLHVARAMVEAGHVENL 230 (357)
Q Consensus 151 vHiLgy~~d~~~~~~~~l~~~l~~i~~~R~~r~~~~i~~L~~~g~~i~~e~v~~~a~~~~~~~~~hia~aLv~~g~~~~~ 230 (357)
.+.+.+++....+ .+
T Consensus 68 --------------~~~~~~~~~~~~~----------------~~----------------------------------- 82 (237)
T PRK00912 68 --------------PSKLRGLVGKFRK----------------KV----------------------------------- 82 (237)
T ss_pred --------------HHHHHHHHHhccC----------------cc-----------------------------------
Confidence 1122211111000 00
Q ss_pred HHHHHHHhhCCCCcccCCCCCCHHHHHHHHHHcCCeEEeeCCCCCC----ChHHHHHHHHHcCCcEEEeecCCC---c--
Q 018376 231 KQAFARYLYDGGPAYSTGSEPLAEVAVQLIHRTGGLAVLAHPWALK----NPAAIIRKLKDVGLHGLEVYRSDG---K-- 301 (357)
Q Consensus 231 ~~~f~~yl~~~~~~yv~~~~~~~eevI~~I~~aGGvaVLAHP~~~~----~~~~li~~l~~~GlDGIEv~~~~~---~-- 301 (357)
+|+. +. +..+.+...+...+++.|++||+..+ ....++..+++.| -++|+.++.- .
T Consensus 83 -----d~v~------v~---~~~~~~~~~a~~~~~vdIi~hp~~~~~~~~~~~~~~~~a~~~g-v~lEIn~s~~~~~~~~ 147 (237)
T PRK00912 83 -----DVLA------VH---GGDEKVNRAACENPRVDILSHPYTKRKDSGINHVLAKEAARNN-VAIEFNLRDILKSRGG 147 (237)
T ss_pred -----cEEE------Ee---CCCHHHHHHHHccCCCcEEeCccccCCCCCcCHHHHHHHHHCC-eEEEEEchHhhhhccc
Confidence 1110 11 12234445677899999999998532 1246677777777 7899987521 1
Q ss_pred -----HHH-HHHHHHHHhcCCceeecccccCCCC
Q 018376 302 -----LVD-VNFLEKIDNFLLLLCLRQISNCDCA 329 (357)
Q Consensus 302 -----~~~-~~~~~lA~~~~Ll~t~~~~~GSD~h 329 (357)
... ..+..+|+++|...+. |||+|
T Consensus 148 ~r~~~~~~~~~~~~~~~~~g~piii----sSdAh 177 (237)
T PRK00912 148 RRARTLSNFRDNLALARKYDFPLVL----TSGAM 177 (237)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCEEE----eCCCC
Confidence 111 3588999999988875 99999
No 14
>PRK06361 hypothetical protein; Provisional
Probab=99.52 E-value=3.5e-13 Score=123.73 Aligned_cols=162 Identities=27% Similarity=0.360 Sum_probs=103.0
Q ss_pred eeCcCCCCCCCHHHHHHHHHHcCCcEEEEecCCCCCCHHHHH--------HHHHhcCCeEEEEEEEEeeeccCCCCCCCc
Q 018376 79 SHSNFSDGYLSPSKLVERAHCNGVKVLALTDHDTMSGIPEAI--------ETARRFGMKIIPGVEISTIFCQRGSESEEP 150 (357)
Q Consensus 79 ~HT~~SDG~~tp~elv~~A~~~Gl~~iaITDHdt~~g~~~~~--------~~a~~~gi~vi~GiEis~~~~~~~~~~g~~ 150 (357)
+||.||||..+|++++++|.+.|++.||||||+.+.+...+. ++.+..++.+++|+|++... .+ .
T Consensus 1 ~Ht~~sdg~~~~~e~v~~A~~~Gl~~i~iTDH~~~~~~~~~~~~~~~~~~~~~~~~~i~v~~GiE~~~~~------~~-~ 73 (212)
T PRK06361 1 THTIFSDGELIPSELVRRARVLGYRAIAITDHADASNLEEILEKLVRAAEELELYWDIEVIPGVELTHVP------PK-L 73 (212)
T ss_pred CCccccCCCCCHHHHHHHHHHcCCCEEEEecCCCCccHHHHHHHHHHHHHHHhhcCCCEEEEEEEEcccC------ch-h
Confidence 699999999999999999999999999999999876543222 12233589999999998532 00 0
Q ss_pred EEEEEEeccCCCCchHHHHHHHHHHHHhHHHHHHHHHHHHHhCCCCCCHHHHHHHhCCCCCCChHHHHHHHHHcCccccH
Q 018376 151 VHILAYYSSCGPSKYEELENFLANIRDGRFLRAKDMILKLNKLKLPLKWEHVAKIAGKGVAPGRLHVARAMVEAGHVENL 230 (357)
Q Consensus 151 vHiLgy~~d~~~~~~~~l~~~l~~i~~~R~~r~~~~i~~L~~~g~~i~~e~v~~~a~~~~~~~~~hia~aLv~~g~~~~~ 230 (357)
...+ ++.+.+.++.+- ..| |.
T Consensus 74 --------------~~~~------------------~~~~~~~~~~~~---------------svH--------~~---- 94 (212)
T PRK06361 74 --------------IPKL------------------AKKARDLGAEIV---------------VVH--------GE---- 94 (212)
T ss_pred --------------hchH------------------HHHHHHCCCEEE---------------EEC--------CC----
Confidence 0010 111111222210 001 00
Q ss_pred HHHHHHHhhCCCCcccCCCCCCHHHHHHHHHHcCCeEEeeCCCCCCChHHHHHHHHHcCCcEEEeecCCC-cHHHHHHHH
Q 018376 231 KQAFARYLYDGGPAYSTGSEPLAEVAVQLIHRTGGLAVLAHPWALKNPAAIIRKLKDVGLHGLEVYRSDG-KLVDVNFLE 309 (357)
Q Consensus 231 ~~~f~~yl~~~~~~yv~~~~~~~eevI~~I~~aGGvaVLAHP~~~~~~~~li~~l~~~GlDGIEv~~~~~-~~~~~~~~~ 309 (357)
..+.+. .....++++ +.|-+-|||||+... ..+++.+++.| ..||+..+.. ......+.+
T Consensus 95 ------------~~~~~~---~~~~~~~a~-~~~~~dvlaHpd~~~--~~~~~~~~~~~-~~lEin~~~~~~~~~~~~l~ 155 (212)
T PRK06361 95 ------------TIVEPV---EEGTNLAAI-ECEDVDILAHPGLIT--EEEAELAAENG-VFLEITARKGHSLTNGHVAR 155 (212)
T ss_pred ------------Ccchhh---hhhhHHHHH-hCCCCcEecCcchhh--HHHHHHHHHcC-eEEEEECCCCcccchHHHHH
Confidence 000000 001124444 788899999998543 35677666666 8999987433 222236899
Q ss_pred HHHhcCCceeecccccCCCC
Q 018376 310 KIDNFLLLLCLRQISNCDCA 329 (357)
Q Consensus 310 lA~~~~Ll~t~~~~~GSD~h 329 (357)
+|+++|+..+. |||+|
T Consensus 156 ~a~~~gi~vv~----~SDaH 171 (212)
T PRK06361 156 IAREAGAPLVI----NTDTH 171 (212)
T ss_pred HHHHhCCcEEE----ECCCC
Confidence 99999999876 99999
No 15
>PRK07945 hypothetical protein; Provisional
Probab=99.51 E-value=1.3e-13 Score=135.66 Aligned_cols=173 Identities=18% Similarity=0.264 Sum_probs=111.0
Q ss_pred CceEEceeeeCcCCCCCCCHHHHHHHHHHcCCcEEEEecCCCCC----C--HHH-------HHHHHHh-cCCeEEEEEEE
Q 018376 71 NNVVFELHSHSNFSDGYLSPSKLVERAHCNGVKVLALTDHDTMS----G--IPE-------AIETARR-FGMKIIPGVEI 136 (357)
Q Consensus 71 ~~~~~DLH~HT~~SDG~~tp~elv~~A~~~Gl~~iaITDHdt~~----g--~~~-------~~~~a~~-~gi~vi~GiEi 136 (357)
+++.+|+|+||.||||..++++++++|.++|++.+|||||-... + ... +.++.++ .+|.++.|+|+
T Consensus 94 ~~~~~D~H~HT~~Sdg~~~~ee~v~~Ai~~Gl~~i~~TDH~p~~~~~~~~~~~~l~~y~~~i~~l~~ky~~I~Il~GiE~ 173 (335)
T PRK07945 94 AALRGDLHTHSDWSDGGSPIEEMARTAAALGHEYCALTDHSPRLTVANGLSAERLRKQLDVVAELNEELAPFRILTGIEV 173 (335)
T ss_pred HHHhhhcccccCCCCCCCCHHHHHHHHHHCCCCEEEEeCCCCCccCCCCCCHHHHHHHHHHHHHHHHhcCCceEEEEeEe
Confidence 36899999999999999999999999999999999999996542 1 111 1122222 36999999999
Q ss_pred EeeeccCCCCCCCcEEEEEEeccCCCCchHHHHHHHHHHHHhHHHHHHHHHHHHHhCCCCCCHHHHHHHhCCCCCCChHH
Q 018376 137 STIFCQRGSESEEPVHILAYYSSCGPSKYEELENFLANIRDGRFLRAKDMILKLNKLKLPLKWEHVAKIAGKGVAPGRLH 216 (357)
Q Consensus 137 s~~~~~~~~~~g~~vHiLgy~~d~~~~~~~~l~~~l~~i~~~R~~r~~~~i~~L~~~g~~i~~e~v~~~a~~~~~~~~~h 216 (357)
.... .+. .+...+++ ....+ .++..|
T Consensus 174 d~~~------~g~---------------~~~~~~~l------------------~~~D~---------------vIgSvH 199 (335)
T PRK07945 174 DILD------DGS---------------LDQEPELL------------------DRLDV---------------VVASVH 199 (335)
T ss_pred cccC------CCC---------------cchhHHHH------------------HhCCE---------------EEEEee
Confidence 8643 010 00001111 11111 234444
Q ss_pred HHHHHHHcCccccHHHHHHHHhhCCCCcccCCCCCCHHHHHHHHHHcCCeEEeeCCCC---C----C------ChHHHHH
Q 018376 217 VARAMVEAGHVENLKQAFARYLYDGGPAYSTGSEPLAEVAVQLIHRTGGLAVLAHPWA---L----K------NPAAIIR 283 (357)
Q Consensus 217 ia~aLv~~g~~~~~~~~f~~yl~~~~~~yv~~~~~~~eevI~~I~~aGGvaVLAHP~~---~----~------~~~~li~ 283 (357)
... ..+. .. ..+.+++++. .+.+-|||||.. + . ...++++
T Consensus 200 ~~~-------~~~~----~~---------------~~~~l~~ai~-~~~~dvlgH~D~~~~~~~~~~~~~~~~~~~~i~~ 252 (335)
T PRK07945 200 SKL-------RMDA----AA---------------MTRRMLAAVA-NPHTDVLGHCTGRLVTGNRGTRPESKFDAEAVFA 252 (335)
T ss_pred cCC-------CCCH----HH---------------HHHHHHHHhc-CCCCeEEecCchhhhccccCCCChhhcCHHHHHH
Confidence 310 0000 00 1255666765 678999999951 1 0 1256777
Q ss_pred HHHHcCCcEEEeecCCCcH-HHHHHHHHHHhcCCceeecccccCCCC
Q 018376 284 KLKDVGLHGLEVYRSDGKL-VDVNFLEKIDNFLLLLCLRQISNCDCA 329 (357)
Q Consensus 284 ~l~~~GlDGIEv~~~~~~~-~~~~~~~lA~~~~Ll~t~~~~~GSD~h 329 (357)
.+++.| -+||+..+.... ....+.++|+++|...|- |||+|
T Consensus 253 a~~e~g-~~lEINt~~~r~~P~~~il~~a~e~G~~vti----gSDAH 294 (335)
T PRK07945 253 ACREHG-TAVEINSRPERRDPPTRLLRLALDAGCLFSI----DTDAH 294 (335)
T ss_pred HHHHhC-CEEEEeCCCCCCCChHHHHHHHHHcCCeEEe----cCCCC
Confidence 888888 899999864321 123589999999998875 99999
No 16
>TIGR01856 hisJ_fam histidinol phosphate phosphatase HisJ family. This model represents the histidinol phosphate phosphatase HisJ of Bacillus subtilis, and related proteins from a number of species within a larger family of phosphatases in the PHP hydrolase family. HisJ catalyzes the penultimate step of histidine biosynthesis but shows no homology to the functionally equivalent sequence in E. coli, a domain of the bifunctional HisB protein. Note, however, that many species have two members and that Clostridium perfringens, predicted not to make histidine, has five members of this family; this family is designated subfamily rather than equivalog to indicate that members may not all act as HisJ.
Probab=99.50 E-value=4.6e-13 Score=126.60 Aligned_cols=65 Identities=28% Similarity=0.415 Sum_probs=50.9
Q ss_pred EceeeeCcCC-CCCCCHHHHHHHHHHcCCcEEEEecCCCCC-----C----------HH----HHHHHHHh--cCCeEEE
Q 018376 75 FELHSHSNFS-DGYLSPSKLVERAHCNGVKVLALTDHDTMS-----G----------IP----EAIETARR--FGMKIIP 132 (357)
Q Consensus 75 ~DLH~HT~~S-DG~~tp~elv~~A~~~Gl~~iaITDHdt~~-----g----------~~----~~~~~a~~--~gi~vi~ 132 (357)
+|+|+||.+| ||.-++++++++|+++|++.+|||||..+. . ++ ++.++.++ .+|.++.
T Consensus 1 ~D~H~Ht~~s~d~~~~~ee~v~~A~~~Gl~~i~~TdH~p~~~~~~~~~~~~~~~~~~~~~Y~~~i~~l~~~y~~~i~I~~ 80 (253)
T TIGR01856 1 RDGHSHSPFCAHGTDTLEEVVQEAIQLGFEEICFTEHAPLPFEYPEETALDKMAFSSLPEYFKEINRLKKEYADKLKILI 80 (253)
T ss_pred CCcccCcCCCCCCCCCHHHHHHHHHHcCCCEEEecCCCCcccCCCccccccchhHHHHHHHHHHHHHHHHHhhCCCeEEE
Confidence 4899999999 999999999999999999999999997631 0 11 12222233 3799999
Q ss_pred EEEEEee
Q 018376 133 GVEISTI 139 (357)
Q Consensus 133 GiEis~~ 139 (357)
|+|+...
T Consensus 81 GiE~~~~ 87 (253)
T TIGR01856 81 GLEVDYI 87 (253)
T ss_pred EEEeccc
Confidence 9999853
No 17
>PRK08123 histidinol-phosphatase; Reviewed
Probab=99.50 E-value=6.5e-13 Score=126.77 Aligned_cols=67 Identities=24% Similarity=0.332 Sum_probs=51.2
Q ss_pred eEEceeeeCcCC-CCC-CCHHHHHHHHHHcCCcEEEEecCCCCCC-----------------HH----HHHHHHHh--cC
Q 018376 73 VVFELHSHSNFS-DGY-LSPSKLVERAHCNGVKVLALTDHDTMSG-----------------IP----EAIETARR--FG 127 (357)
Q Consensus 73 ~~~DLH~HT~~S-DG~-~tp~elv~~A~~~Gl~~iaITDHdt~~g-----------------~~----~~~~~a~~--~g 127 (357)
|++|+|+||.+| ||. -++++++++|.++|++.+|||||..... ++ ++.++.++ .+
T Consensus 2 m~~D~H~HT~~s~h~~~~~~e~~v~~Ai~~Gl~~i~~tdH~p~~~~~~~~~~~~~~~~~~~~~~~Y~~~i~~l~~ky~~~ 81 (270)
T PRK08123 2 MKRDGHTHTPFCPHGSKDDLEAYIERAIELGFTEITFTEHAPLPPGFIDPTPRQDSAMAIEQLERYLKELNELKKKYAGQ 81 (270)
T ss_pred CccccccCCCCCCCCCCCCHHHHHHHHHHcCCcEEEEeccCCCccccCCcccCcccccCHHHHHHHHHHHHHHHHHccCC
Confidence 578999999999 775 6899999999999999999999965421 11 12222223 35
Q ss_pred CeEEEEEEEEee
Q 018376 128 MKIIPGVEISTI 139 (357)
Q Consensus 128 i~vi~GiEis~~ 139 (357)
|.++.|+|+...
T Consensus 82 i~i~~GiE~~~~ 93 (270)
T PRK08123 82 IDIRIGLEVDYI 93 (270)
T ss_pred CeEEEEEEeecc
Confidence 999999999853
No 18
>COG1387 HIS2 Histidinol phosphatase and related hydrolases of the PHP family [Amino acid transport and metabolism / General function prediction only]
Probab=99.48 E-value=1.9e-13 Score=128.32 Aligned_cols=174 Identities=25% Similarity=0.390 Sum_probs=113.1
Q ss_pred eEEceeeeCcCCCCCCCHHHHHHHHHHcCCcEEEEecCCCCC---C--------HHHHHHHHHhcCCeEEEEEEEEeeec
Q 018376 73 VVFELHSHSNFSDGYLSPSKLVERAHCNGVKVLALTDHDTMS---G--------IPEAIETARRFGMKIIPGVEISTIFC 141 (357)
Q Consensus 73 ~~~DLH~HT~~SDG~~tp~elv~~A~~~Gl~~iaITDHdt~~---g--------~~~~~~~a~~~gi~vi~GiEis~~~~ 141 (357)
+++|+|+||.||||..+|++++++|.+.|++.+|||||--.. . ..++..+.+.+.++++.|+|++...
T Consensus 1 ~~~D~H~HT~~sdg~~~~~e~~~~A~~~g~~~~~iTdH~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~~G~E~~~~~- 79 (237)
T COG1387 1 MKIDLHTHTVFSDGEATPEEMVEAAIELGLEYIAITDHAPFLRVGLDAELLKYFIEEIRELKKEYDIKILIGIEVDILP- 79 (237)
T ss_pred CCcccccCcccccCCCCHHHHHHHHHHcCCeEEEEeccccccccCCCHHHHHHHHHHHHHHHHhcCceEEEeEEEEecC-
Confidence 368999999999999999999999999999999999997662 1 1223444455779999999999865
Q ss_pred cCCCCCCCcEEEEEEeccCCCCchHHHHHHHHHHHHhHHHHHHHHHHHHHhCCCCCCHHHHHHHhCCCCCCChHHHHHHH
Q 018376 142 QRGSESEEPVHILAYYSSCGPSKYEELENFLANIRDGRFLRAKDMILKLNKLKLPLKWEHVAKIAGKGVAPGRLHVARAM 221 (357)
Q Consensus 142 ~~~~~~g~~vHiLgy~~d~~~~~~~~l~~~l~~i~~~R~~r~~~~i~~L~~~g~~i~~e~v~~~a~~~~~~~~~hia~aL 221 (357)
.+ .+.+.. .+ +.+.++ .++..|..
T Consensus 80 -----~~-~~d~~~-----------~~---------------------~~~lD~---------------vi~svH~~--- 103 (237)
T COG1387 80 -----DG-SLDFLD-----------EI---------------------LKELDY---------------VIASVHEL--- 103 (237)
T ss_pred -----CC-Ccccch-----------hh---------------------HhhcCE---------------EEEEeccC---
Confidence 11 111100 00 000010 11111110
Q ss_pred HHcCccccHHHHHHHHhhCCCCcccCCCCCCHHHHHHHHHHcCCeEEeeCCCCCC-----------ChHHHHHHHHHcCC
Q 018376 222 VEAGHVENLKQAFARYLYDGGPAYSTGSEPLAEVAVQLIHRTGGLAVLAHPWALK-----------NPAAIIRKLKDVGL 290 (357)
Q Consensus 222 v~~g~~~~~~~~f~~yl~~~~~~yv~~~~~~~eevI~~I~~aGGvaVLAHP~~~~-----------~~~~li~~l~~~Gl 290 (357)
...+.......+.+...-..+-+-|||||+-.. ...++++.+.+.|
T Consensus 104 ----------------------~~~~~~~~~~~~~~~~a~~~~~v~il~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~g- 160 (237)
T COG1387 104 ----------------------NFEDQDEEDYTERLIAAMSNGAVDILAHPGGRLLGRIDRGAYKEDIEELIELAEKNG- 160 (237)
T ss_pred ----------------------CccccCHHHHHHHHHHHHcCCCccEEecCCccccccccccccHHHHHHHHHHHHHhC-
Confidence 001111223345666666778899999998521 1245666666666
Q ss_pred cEEEeecCCCcH-HHHHHHHHHHhcCCceeecccccCCCCC
Q 018376 291 HGLEVYRSDGKL-VDVNFLEKIDNFLLLLCLRQISNCDCAL 330 (357)
Q Consensus 291 DGIEv~~~~~~~-~~~~~~~lA~~~~Ll~t~~~~~GSD~h~ 330 (357)
-++|+..+.+.. ....+..+|+++|...+- |||+|.
T Consensus 161 ~aleins~~~~~~~~~~~~~~~~e~G~~~~i----~tDaH~ 197 (237)
T COG1387 161 KALEINSRPGRLDPNSEILRLARELGVKLAI----GTDAHR 197 (237)
T ss_pred cEEeecCCcCccCchHHHHHHHHHhCCeEEe----ecCcCC
Confidence 899998874422 223589999999999986 999993
No 19
>TIGR00594 polc DNA-directed DNA polymerase III (polc). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.47 E-value=6.3e-13 Score=146.73 Aligned_cols=121 Identities=27% Similarity=0.322 Sum_probs=93.6
Q ss_pred EEceeeeCcCC--CCCCCHHHHHHHHHHcCCcEEEEecCCCCCCHHHHHHHHHhcCCeEEEEEEEEeeeccC-C----CC
Q 018376 74 VFELHSHSNFS--DGYLSPSKLVERAHCNGVKVLALTDHDTMSGIPEAIETARRFGMKIIPGVEISTIFCQR-G----SE 146 (357)
Q Consensus 74 ~~DLH~HT~~S--DG~~tp~elv~~A~~~Gl~~iaITDHdt~~g~~~~~~~a~~~gi~vi~GiEis~~~~~~-~----~~ 146 (357)
+++||+||.|| ||..+|++++++|+++|++++|||||+++.|+.++.+.|++.||++|+|+|+++..... + ..
T Consensus 1 fv~LHvHS~yS~Ldg~~~~~elv~~A~~~G~~alAiTDH~~l~g~~~f~~~~~~~gIkpI~G~Ei~~~~~~~~~~~~~~~ 80 (1022)
T TIGR00594 1 FVHLHVHSDYSLLDGAAKIKPLVKKAKELGMPALALTDHGNMFGAVEFYKACKKAGIKPIIGCEAYVAPGSRFDKKRISK 80 (1022)
T ss_pred CeeeeecccCccccccCCHHHHHHHHHHCCCCEEEEecCCCchhHHHHHHHHHHcCCeEEEEEEEEeeCCCccccccccc
Confidence 47999999999 99999999999999999999999999999999999999999999999999999864211 0 00
Q ss_pred CCCcEEEEEEeccCCCCchHHHHHHHHHHHHhHHHHHHHHHHHHHhCCCCCCHHHHHHHhC
Q 018376 147 SEEPVHILAYYSSCGPSKYEELENFLANIRDGRFLRAKDMILKLNKLKLPLKWEHVAKIAG 207 (357)
Q Consensus 147 ~g~~vHiLgy~~d~~~~~~~~l~~~l~~i~~~R~~r~~~~i~~L~~~g~~i~~e~v~~~a~ 207 (357)
.+...|++.+..+ ..+|.+|.++.+...... ......++++++.++..
T Consensus 81 ~~~~~~l~llAkn--~~Gy~nL~kL~S~a~~~~-----------~~~~p~i~~~~l~~~~~ 128 (1022)
T TIGR00594 81 GKEAYHLILLAKN--NTGYRNLMKLSSLAYLEG-----------FYYKPRIDKELLEEHSE 128 (1022)
T ss_pred cCCCccEEEEeCC--HHHHHHHHHHHHHHHhhC-----------CCCCcccCHHHHHhcCC
Confidence 1223588888643 467888888877654210 00123478888877653
No 20
>PRK07279 dnaE DNA polymerase III DnaE; Reviewed
Probab=99.47 E-value=2.5e-13 Score=148.77 Aligned_cols=95 Identities=24% Similarity=0.377 Sum_probs=84.1
Q ss_pred eEEceeeeCcCC--CCCCCHHHHHHHHHHcCCcEEEEecCCCCCCHHHHHHHHHhcCCeEEEEEEEEeeeccCCCCCCCc
Q 018376 73 VVFELHSHSNFS--DGYLSPSKLVERAHCNGVKVLALTDHDTMSGIPEAIETARRFGMKIIPGVEISTIFCQRGSESEEP 150 (357)
Q Consensus 73 ~~~DLH~HT~~S--DG~~tp~elv~~A~~~Gl~~iaITDHdt~~g~~~~~~~a~~~gi~vi~GiEis~~~~~~~~~~g~~ 150 (357)
|++.||+||.|| ||..+|++++++|++.|++++|||||+++.|..+|.++|++.||++|.|+|+.... .+..
T Consensus 1 mfvhLh~hS~YSlldg~~~i~~lv~~A~~~g~~alAlTD~~~m~Ga~~F~~~a~~~gIkPIiG~e~~v~~------~~~~ 74 (1034)
T PRK07279 1 MFAQLDTKTVYSFMDSLIDLEKYVERAKELGYQTIGIMDKDNLYGAYHFIEGAQKNGLQPILGLELNIFV------EEQE 74 (1034)
T ss_pred CeeeeecCCCCccccccCCHHHHHHHHHHCCCCEEEEEcCCccccHHHHHHHHHHcCCcEEEEEEEEEec------CCCc
Confidence 678999999999 99999999999999999999999999999999999999999999999999999864 2334
Q ss_pred EEEEEEeccCCCCchHHHHHHHHHH
Q 018376 151 VHILAYYSSCGPSKYEELENFLANI 175 (357)
Q Consensus 151 vHiLgy~~d~~~~~~~~l~~~l~~i 175 (357)
.|++.+..+ ..+|.+|.++.+..
T Consensus 75 ~~lvlLAkN--~~GY~nL~kL~s~~ 97 (1034)
T PRK07279 75 VTLRLIAKN--TQGYKNLLKISTAK 97 (1034)
T ss_pred ceEEEEECC--HHHHHHHHHHHHHh
Confidence 688888743 46788888887643
No 21
>PRK05898 dnaE DNA polymerase III DnaE; Validated
Probab=99.43 E-value=5.3e-13 Score=144.89 Aligned_cols=95 Identities=23% Similarity=0.285 Sum_probs=84.1
Q ss_pred eEEceeeeCcCC--CCCCCHHHHHHHHHHcCCcEEEEecCCCCCCHHHHHHHHHhcCCeEEEEEEEEeeeccCCCCCCCc
Q 018376 73 VVFELHSHSNFS--DGYLSPSKLVERAHCNGVKVLALTDHDTMSGIPEAIETARRFGMKIIPGVEISTIFCQRGSESEEP 150 (357)
Q Consensus 73 ~~~DLH~HT~~S--DG~~tp~elv~~A~~~Gl~~iaITDHdt~~g~~~~~~~a~~~gi~vi~GiEis~~~~~~~~~~g~~ 150 (357)
|++.|||||.|| ||..+|++++++|++.|++++|||||+++.|..+|.++|++.||++|.|+|+.+.. ..
T Consensus 1 mfvhLh~hS~YSlLdg~~~~~~lv~~A~e~g~~alALTD~~nl~GaveF~~~ak~~gIkPIiG~e~~v~~--------~~ 72 (971)
T PRK05898 1 MFINLNTHSHYSLLSSTLSIDDIIKFALDNNQPYVCLTDLNNLYGCIEFYDKAKAHNLIPIIGLEIEYQS--------TN 72 (971)
T ss_pred CeeeeecCCccccccccCCHHHHHHHHHHCCCCEEEEEeCCccccHHHHHHHHHHcCCCEEEEEEEEEcC--------CC
Confidence 578999999999 99999999999999999999999999999999999999999999999999998742 23
Q ss_pred EEEEEEeccCCCCchHHHHHHHHHHHH
Q 018376 151 VHILAYYSSCGPSKYEELENFLANIRD 177 (357)
Q Consensus 151 vHiLgy~~d~~~~~~~~l~~~l~~i~~ 177 (357)
.|++.+.-+ ..+|.+|.++.+....
T Consensus 73 ~~lvLLAkn--~~GY~nL~kLsS~~~~ 97 (971)
T PRK05898 73 ATLVLYAKN--YNGYLNLIKISSFIMT 97 (971)
T ss_pred ceEEEEeCC--HHHHHHHHHHHHHHHh
Confidence 688877643 4679999998876553
No 22
>PRK06826 dnaE DNA polymerase III DnaE; Reviewed
Probab=99.42 E-value=5.4e-13 Score=148.18 Aligned_cols=123 Identities=25% Similarity=0.383 Sum_probs=94.6
Q ss_pred ceEEceeeeCcCC--CCCCCHHHHHHHHHHcCCcEEEEecCCCCCCHHHHHHHHHhcCCeEEEEEEEEeeeccC-CCC--
Q 018376 72 NVVFELHSHSNFS--DGYLSPSKLVERAHCNGVKVLALTDHDTMSGIPEAIETARRFGMKIIPGVEISTIFCQR-GSE-- 146 (357)
Q Consensus 72 ~~~~DLH~HT~~S--DG~~tp~elv~~A~~~Gl~~iaITDHdt~~g~~~~~~~a~~~gi~vi~GiEis~~~~~~-~~~-- 146 (357)
+.++|||+||.|| ||..+|++++++|++.|++++|||||+++.|+.++.+.|++.||++|+|+|+.+....+ +..
T Consensus 3 m~fvdLHvHT~yS~ldg~~~~~elv~~A~e~G~~avAITDH~~~~g~~~f~~~a~~~gIkpIiG~Ei~~~~~~~~~~~~~ 82 (1151)
T PRK06826 3 MSFVHLHVHTEYSLLDGSARIKDLIKRAKELGMDSIAITDHGVMYGVVDFYKAAKKQGIKPIIGCEVYVAPRSRFDKEPD 82 (1151)
T ss_pred CcceeccccccCChhhhcCCHHHHHHHHHHCCCCEEEEecCCchHhHHHHHHHHHhCCCEEEEEEEEEecCCcccccccc
Confidence 4589999999999 99999999999999999999999999999999999999999999999999999864211 000
Q ss_pred -CCCcEEEEEEeccCCCCchHHHHHHHHHHHHhHHHHHHHHHHHHHhCCCCCCHHHHHHHhC
Q 018376 147 -SEEPVHILAYYSSCGPSKYEELENFLANIRDGRFLRAKDMILKLNKLKLPLKWEHVAKIAG 207 (357)
Q Consensus 147 -~g~~vHiLgy~~d~~~~~~~~l~~~l~~i~~~R~~r~~~~i~~L~~~g~~i~~e~v~~~a~ 207 (357)
.....|++.+..+ ..+|.+|.++.+....... -....++++++.++..
T Consensus 83 ~~~~~~~l~lLAkn--~~Gy~nL~kL~S~a~~~~~-----------~~~pri~~~~L~~~~~ 131 (1151)
T PRK06826 83 IDNETYHLVLLAKN--ETGYKNLMKIVSKAFTEGF-----------YYKPRVDHELLKEHSE 131 (1151)
T ss_pred ccCCCceEEEEEcC--cHHHHHHHHHHHHHhccCC-----------cCCccCCHHHHHhhCC
Confidence 0123588888743 5678888888765442100 0123478888877654
No 23
>PRK08609 hypothetical protein; Provisional
Probab=99.42 E-value=1.9e-12 Score=135.54 Aligned_cols=172 Identities=23% Similarity=0.347 Sum_probs=107.2
Q ss_pred ceEEceeeeCcCCCCCCCHHHHHHHHHHcCCcEEEEecCCCCC----C--HHHH-------HHHHHh-cCCeEEEEEEEE
Q 018376 72 NVVFELHSHSNFSDGYLSPSKLVERAHCNGVKVLALTDHDTMS----G--IPEA-------IETARR-FGMKIIPGVEIS 137 (357)
Q Consensus 72 ~~~~DLH~HT~~SDG~~tp~elv~~A~~~Gl~~iaITDHdt~~----g--~~~~-------~~~a~~-~gi~vi~GiEis 137 (357)
.+++|+||||.+|||..++++++++|.+.|++.++||||.... + ..++ .++.++ .+|.++.|+|+.
T Consensus 333 d~~~DlH~HT~~sDg~~sleemv~~A~~~Gl~~i~iTdH~~~~~~~~~~~~~~l~~~~~ei~~l~~~~~~i~Il~GiEv~ 412 (570)
T PRK08609 333 DIQGDLHMHTTWSDGAFSIEEMVEACIAKGYEYMAITDHSQYLKVANGLTEERLLEQAEEIKALNEKYPEIDILSGIEMD 412 (570)
T ss_pred hhcCCccccCCCCCCCCCHHHHHHHHHHCCCCEEEEeCCCCCccccCCCCHHHHHHHHHHHHHHHHhcCCCeEEEEEEEe
Confidence 4789999999999999999999999999999999999997431 1 1121 222222 379999999998
Q ss_pred eeeccCCCCCCCcEEEEEEeccCCCCchHHHHHHHHHHHHhHHHHHHHHHHHHHhCCCCCCHHHHHHHhCCCCCCChHHH
Q 018376 138 TIFCQRGSESEEPVHILAYYSSCGPSKYEELENFLANIRDGRFLRAKDMILKLNKLKLPLKWEHVAKIAGKGVAPGRLHV 217 (357)
Q Consensus 138 ~~~~~~~~~~g~~vHiLgy~~d~~~~~~~~l~~~l~~i~~~R~~r~~~~i~~L~~~g~~i~~e~v~~~a~~~~~~~~~hi 217 (357)
... .+. +-| .+.+ |+...+ .++..|.
T Consensus 413 i~~------~g~----~d~--------~~~~---------------------L~~~D~---------------vI~SvH~ 438 (570)
T PRK08609 413 ILP------DGS----LDY--------DDEV---------------------LAELDY---------------VIAAIHS 438 (570)
T ss_pred ecC------Ccc----hhh--------cHHH---------------------HHhhCE---------------EEEEeec
Confidence 753 110 001 0110 000000 1222221
Q ss_pred HHHHHHcCccccHHHHHHHHhhCCCCcccCCCCCCHHHHHHHHHHcCCeEEeeCCCC-----CC----ChHHHHHHHHHc
Q 018376 218 ARAMVEAGHVENLKQAFARYLYDGGPAYSTGSEPLAEVAVQLIHRTGGLAVLAHPWA-----LK----NPAAIIRKLKDV 288 (357)
Q Consensus 218 a~aLv~~g~~~~~~~~f~~yl~~~~~~yv~~~~~~~eevI~~I~~aGGvaVLAHP~~-----~~----~~~~li~~l~~~ 288 (357)
. +..+. .. ..+.+++++ +.|.+.|||||.+ +. ..+.+++.+++.
T Consensus 439 ~-------~~~~~------------------~~-~~~~l~~a~-~~~~~dILaHpd~rli~~~~~~~~d~~~i~~~a~~~ 491 (570)
T PRK08609 439 S-------FSQSE------------------EE-IMKRLENAC-RNPYVRLIAHPTGRLIGRRDGYDVNIDQLIELAKET 491 (570)
T ss_pred C-------CCCCH------------------HH-HHHHHHHHh-cCCCceEEECCCccccccCCCchHHHHHHHHHHHHh
Confidence 0 00000 00 013344554 5789999999983 11 124556666777
Q ss_pred CCcEEEeecCCCc-HHHHHHHHHHHhcCCceeecccccCCCC
Q 018376 289 GLHGLEVYRSDGK-LVDVNFLEKIDNFLLLLCLRQISNCDCA 329 (357)
Q Consensus 289 GlDGIEv~~~~~~-~~~~~~~~lA~~~~Ll~t~~~~~GSD~h 329 (357)
| -.+|+..+... .....+.+.|.++|+..+- |||+|
T Consensus 492 G-~~lEINa~~~r~~~~~~~~~~~~e~Gv~i~i----gSDAH 528 (570)
T PRK08609 492 N-TALELNANPNRLDLSAEHLKKAQEAGVKLAI----NTDAH 528 (570)
T ss_pred C-CEEEEcCCccccCccHHHHHHHHHcCCEEEE----ECCCC
Confidence 8 89999886432 1123588999999998875 99999
No 24
>PRK07374 dnaE DNA polymerase III subunit alpha; Validated
Probab=99.41 E-value=7.3e-13 Score=147.21 Aligned_cols=102 Identities=30% Similarity=0.424 Sum_probs=84.1
Q ss_pred eEEceeeeCcCC--CCCCCHHHHHHHHHHcCCcEEEEecCCCCCCHHHHHHHHHhcCCeEEEEEEEEeeeccC-C--CCC
Q 018376 73 VVFELHSHSNFS--DGYLSPSKLVERAHCNGVKVLALTDHDTMSGIPEAIETARRFGMKIIPGVEISTIFCQR-G--SES 147 (357)
Q Consensus 73 ~~~DLH~HT~~S--DG~~tp~elv~~A~~~Gl~~iaITDHdt~~g~~~~~~~a~~~gi~vi~GiEis~~~~~~-~--~~~ 147 (357)
.+++||+||.|| ||..+|++++++|++.|++++|||||+++.|+.++.++|++.||++|+|+|+++..... + ...
T Consensus 2 ~fv~LHvHS~ySlLdg~~~i~elv~~A~~~G~~alAiTDh~~l~G~~~f~~~~~~~gIkpIiG~E~~v~~~~~~~~~~~~ 81 (1170)
T PRK07374 2 AFVPLHNHSDYSLLDGASQLPKMVERAKELGMPAIALTDHGVMYGAIELLKLCKGKGIKPIIGNEMYVINGSIDDPQPKK 81 (1170)
T ss_pred CcccccccCcCchhhccCCHHHHHHHHHHCCCCEEEEecCCchHHHHHHHHHHHHcCCeEEEEeEEEecCcccccccccc
Confidence 378999999999 99999999999999999999999999999999999999999999999999999853110 0 001
Q ss_pred CCcEEEEEEeccCCCCchHHHHHHHHHHH
Q 018376 148 EEPVHILAYYSSCGPSKYEELENFLANIR 176 (357)
Q Consensus 148 g~~vHiLgy~~d~~~~~~~~l~~~l~~i~ 176 (357)
....|++.+..+ ..+|.+|.++.+...
T Consensus 82 ~~~~~l~LLAkN--~~Gy~nL~kL~S~a~ 108 (1170)
T PRK07374 82 EKRYHLVVLAKN--ATGYKNLVKLTTISH 108 (1170)
T ss_pred cccceEEEEEeC--cHHHHHHHHHHHHHH
Confidence 123588888643 567999988877643
No 25
>PRK06920 dnaE DNA polymerase III DnaE; Reviewed
Probab=99.40 E-value=4.9e-12 Score=139.95 Aligned_cols=115 Identities=22% Similarity=0.254 Sum_probs=93.1
Q ss_pred eEEceeeeCcCC--CCCCCHHHHHHHHHHcCCcEEEEecCCCCCCHHHHHHHHHhcCCeEEEEEEEEeeeccCCCCCCCc
Q 018376 73 VVFELHSHSNFS--DGYLSPSKLVERAHCNGVKVLALTDHDTMSGIPEAIETARRFGMKIIPGVEISTIFCQRGSESEEP 150 (357)
Q Consensus 73 ~~~DLH~HT~~S--DG~~tp~elv~~A~~~Gl~~iaITDHdt~~g~~~~~~~a~~~gi~vi~GiEis~~~~~~~~~~g~~ 150 (357)
.++.||+||.|| ||..+|++|+++|++.|++++|||||+++.|..+|.++|++.||++|.|+|+...... ....
T Consensus 2 ~fvhLhvhS~ySlLdg~~~i~~lv~~A~~~g~~alAlTDh~~m~Ga~~F~~~a~~~gIkPIiG~e~~v~~~~----~~~~ 77 (1107)
T PRK06920 2 KFVHLQCQTVFSLLKSACKIDELVVRAKELGYSSLAITDENVMYGVIPFYKACKKHGIHPIIGLTASIFSEE----EEKS 77 (1107)
T ss_pred CceeeecCcccchhccCCCHHHHHHHHHHCCCCEEEEEeCChHhHHHHHHHHHHHcCCCEeeeeEEEEecCC----CCCc
Confidence 378999999999 9999999999999999999999999999999999999999999999999999985310 1123
Q ss_pred EEEEEEeccCCCCchHHHHHHHHHHHHhHHHHHHHHHHHHHhCCCCCCHHHHHHHhC
Q 018376 151 VHILAYYSSCGPSKYEELENFLANIRDGRFLRAKDMILKLNKLKLPLKWEHVAKIAG 207 (357)
Q Consensus 151 vHiLgy~~d~~~~~~~~l~~~l~~i~~~R~~r~~~~i~~L~~~g~~i~~e~v~~~a~ 207 (357)
.|++.+..+ ..+|.+|.++.+..... ....++++.+.++..
T Consensus 78 ~~l~LLAkn--~~Gy~nL~kL~S~~~~~--------------~~p~i~~~~L~~~~~ 118 (1107)
T PRK06920 78 YPLVLLAEN--EIGYQNLLKISSSIMTK--------------SKEGIPKKWLAHYAK 118 (1107)
T ss_pred ccEEEEeCC--HHHHHHHHHHHHHHHhc--------------CCCCCCHHHHHhhCC
Confidence 588888643 46788888877654321 134577888877654
No 26
>PRK05588 histidinol-phosphatase; Provisional
Probab=99.40 E-value=3.3e-12 Score=120.70 Aligned_cols=182 Identities=17% Similarity=0.283 Sum_probs=108.4
Q ss_pred EEceeeeCcCC-CCCCCHHHHHHHHHHcCCcEEEEecCCCCC---------CHHHHHHHHHhc-CCeEEEEEEEEeeecc
Q 018376 74 VFELHSHSNFS-DGYLSPSKLVERAHCNGVKVLALTDHDTMS---------GIPEAIETARRF-GMKIIPGVEISTIFCQ 142 (357)
Q Consensus 74 ~~DLH~HT~~S-DG~~tp~elv~~A~~~Gl~~iaITDHdt~~---------g~~~~~~~a~~~-gi~vi~GiEis~~~~~ 142 (357)
++|+|+||.+| ||..++++++++|.++|++.+ ||||-.+. ..+...+..++. +++++.|+|+.....
T Consensus 1 ~~D~H~HT~~s~~~~~~~ee~v~~A~~~Gl~~~-~TdH~~~~~~~~~~~~~~~~~y~~~i~~~~~~~I~~GiE~~~~~~- 78 (255)
T PRK05588 1 MFDTHIHTEFSTDSKMKIEEAIKKAKENNLGII-ITEHMDLNLPDKNKFCFDVDSYFNKYSKYRNNKLLLGIELGMEKD- 78 (255)
T ss_pred CeeecccCCCCCCcccCHHHHHHHHHHcCCCEE-EeCCCCCCCCCccccccCHHHHHHHHHHHhcCCcceEEEecccCC-
Confidence 47999999999 999999999999999999988 99996331 122223222333 589999999964320
Q ss_pred CCCCCCCcEEEEEEeccCCCCchHHHHHHHHHHHHhHHHHHHHHHHHHHhCCCCCCHHHHHHHhCCCCCCChHHHHHH--
Q 018376 143 RGSESEEPVHILAYYSSCGPSKYEELENFLANIRDGRFLRAKDMILKLNKLKLPLKWEHVAKIAGKGVAPGRLHVARA-- 220 (357)
Q Consensus 143 ~~~~~g~~vHiLgy~~d~~~~~~~~l~~~l~~i~~~R~~r~~~~i~~L~~~g~~i~~e~v~~~a~~~~~~~~~hia~a-- 220 (357)
..+.+.++ |.+.+ +++ .++..|.+.-
T Consensus 79 ---------------------~~~~~~~~------------------l~~~~--~D~-----------vigSvH~~~~~~ 106 (255)
T PRK05588 79 ---------------------LIEENKEL------------------INKYE--FDY-----------VIGSIHLVDKLD 106 (255)
T ss_pred ---------------------CHHHHHHH------------------HhhCC--CCe-----------EEEeEEeeCCCc
Confidence 01111111 11111 111 1233332110
Q ss_pred HHHcCcc--ccHHHHHHHHhhCCCCcccCCCCCCHHHHHHHHHHcCCeEEeeCCCCC---C---C-------h----HHH
Q 018376 221 MVEAGHV--ENLKQAFARYLYDGGPAYSTGSEPLAEVAVQLIHRTGGLAVLAHPWAL---K---N-------P----AAI 281 (357)
Q Consensus 221 Lv~~g~~--~~~~~~f~~yl~~~~~~yv~~~~~~~eevI~~I~~aGGvaVLAHP~~~---~---~-------~----~~l 281 (357)
.....+. .+..++++.|+ +.+++++...+.+-|+|||... . . . .++
T Consensus 107 ~~~~~~~~~~~~~~~~~~Y~---------------~~~~~~v~~~~~~dvlgH~Dl~~r~~~~~~~~~~~~~~~~~~~~i 171 (255)
T PRK05588 107 LYLDEFYKDKSKEEAYHIYF---------------ENMLKCLEKYDFIDSLGHIDYISRYAKYEDKEIYYDEFKEIIDEI 171 (255)
T ss_pred chHHHHhcCCCHHHHHHHHH---------------HHHHHHHHhcCCCCCccCHhHHHHcCccccccccHHHHHHHHHHH
Confidence 0000000 12233444444 4567777777889999999722 1 0 1 456
Q ss_pred HHHHHHcCCcEEEeecCCCcH-----HHHHHHHHHHhcCCc-eeecccccCCCC
Q 018376 282 IRKLKDVGLHGLEVYRSDGKL-----VDVNFLEKIDNFLLL-LCLRQISNCDCA 329 (357)
Q Consensus 282 i~~l~~~GlDGIEv~~~~~~~-----~~~~~~~lA~~~~Ll-~t~~~~~GSD~h 329 (357)
++.+++.| -++|+..+.... ....+...+.+.|.. .|. |||+|
T Consensus 172 l~~~~~~g-~~lEINt~~l~~~~~~~~~~~~l~~~~~~g~~~i~l----gSDAH 220 (255)
T PRK05588 172 LKVLIEKE-KVLEINTRRLDDKRSVENLVKIYKRFYELGGKYITL----GSDAH 220 (255)
T ss_pred HHHHHHcC-CEEEEECcccCCCCCCCCHHHHHHHHHHcCCcEEEE----ECCCC
Confidence 67777888 899998854211 123577888999876 464 99999
No 27
>COG0587 DnaE DNA polymerase III, alpha subunit [DNA replication, recombination, and repair]
Probab=99.39 E-value=1.2e-12 Score=144.25 Aligned_cols=103 Identities=29% Similarity=0.345 Sum_probs=87.9
Q ss_pred ceEEceeeeCcCC--CCCCCHHHHHHHHHHcCCcEEEEecCCCCCCHHHHHHHHHhcCCeEEEEEEEEeeeccCCCCCCC
Q 018376 72 NVVFELHSHSNFS--DGYLSPSKLVERAHCNGVKVLALTDHDTMSGIPEAIETARRFGMKIIPGVEISTIFCQRGSESEE 149 (357)
Q Consensus 72 ~~~~DLH~HT~~S--DG~~tp~elv~~A~~~Gl~~iaITDHdt~~g~~~~~~~a~~~gi~vi~GiEis~~~~~~~~~~g~ 149 (357)
+.++.|||||.|| ||..++++|+++|++.|+.++|||||+++.|..+|...|++.||++|.|+|++....... ....
T Consensus 2 ~~fv~Lh~hS~YS~Ldga~~i~~Lv~~A~~~g~~AlaiTD~~nl~Gav~Fy~~ak~~gikpIiG~e~~v~~~~~~-~~~~ 80 (1139)
T COG0587 2 MSFVHLHVHSEYSLLDGASKIEELVKKAKELGMPALALTDHNNLYGAVEFYKAAKKAGIKPIIGCEAYVANGDGF-RGRE 80 (1139)
T ss_pred CceeecccccccchhccccCHHHHHHHHHHcCCCeEEEecCCcceeHHHHHHHHHHcCCeEEeeeEEEEeccccc-cccC
Confidence 3789999999999 999999999999999999999999999999999999999999999999999888752111 1234
Q ss_pred cEEEEEEeccCCCCchHHHHHHHHHHHH
Q 018376 150 PVHILAYYSSCGPSKYEELENFLANIRD 177 (357)
Q Consensus 150 ~vHiLgy~~d~~~~~~~~l~~~l~~i~~ 177 (357)
..|++.|..+ +.+|.+|.++++....
T Consensus 81 ~~~l~llAkn--~~GY~nL~~LsS~a~~ 106 (1139)
T COG0587 81 RPHLLLLAKN--NEGYKNLVKLSSIAYL 106 (1139)
T ss_pred CccEEEEeCC--HHHHHHHHHHHHHHHh
Confidence 5899999754 5679899888776554
No 28
>TIGR01405 polC_Gram_pos DNA polymerase III, alpha chain, Gram-positive type. The N-terminal region of about 200 amino acids is rich in low-complexity sequence, poorly alignable, and not included n this model.
Probab=99.39 E-value=7.4e-13 Score=147.57 Aligned_cols=70 Identities=36% Similarity=0.504 Sum_probs=67.2
Q ss_pred CceEEceeeeCcCC--CCCCCHHHHHHHHHHcCCcEEEEecCCCCCCHHHHHHHHHhcCCeEEEEEEEEeee
Q 018376 71 NNVVFELHSHSNFS--DGYLSPSKLVERAHCNGVKVLALTDHDTMSGIPEAIETARRFGMKIIPGVEISTIF 140 (357)
Q Consensus 71 ~~~~~DLH~HT~~S--DG~~tp~elv~~A~~~Gl~~iaITDHdt~~g~~~~~~~a~~~gi~vi~GiEis~~~ 140 (357)
..+++|||+||.+| ||.++|++++++|+++|+++||||||+++.|++++.+++++.|+++|+|+|+++..
T Consensus 101 ~~krvDLH~HT~~S~~Dg~~~~~elv~~A~~~Gl~aiAITDH~~~~~~~~~~~~~~~~~ikvI~GvE~~~~~ 172 (1213)
T TIGR01405 101 KEKRVELHFHTKMSQMDAITSVQEYVKQAKKWGHKAIAITDHGVVQAFPEAYKAAKKDGIKIIYGMEANLVD 172 (1213)
T ss_pred ccceEEeeeCccCcccccCCCHHHHHHHHHHCCCCEEEEecCCCccCHHHHHHHHHhcCCEEEEEEEEEeec
Confidence 46899999999999 99999999999999999999999999999999999999999999999999999864
No 29
>PRK07329 hypothetical protein; Provisional
Probab=99.23 E-value=6.7e-11 Score=111.51 Aligned_cols=61 Identities=21% Similarity=0.340 Sum_probs=46.3
Q ss_pred EceeeeCcCC-CCCCCHHHHHHHHHHcCCcEEEEecCCCC-----------CCHHH----HHHHHHhcCCeEEEEEEEEe
Q 018376 75 FELHSHSNFS-DGYLSPSKLVERAHCNGVKVLALTDHDTM-----------SGIPE----AIETARRFGMKIIPGVEIST 138 (357)
Q Consensus 75 ~DLH~HT~~S-DG~~tp~elv~~A~~~Gl~~iaITDHdt~-----------~g~~~----~~~~a~~~gi~vi~GiEis~ 138 (357)
+|+|+||.|| ||..++++++++|. +.++||||-.+ ..+++ +.++.++++.+++.|+|+..
T Consensus 2 ~D~H~Ht~~s~d~~~~~ee~~~~A~----~~i~~TdH~~~~~~~~~~~~~~~~~~~Y~~ei~~lk~ky~~~I~~GlE~~~ 77 (246)
T PRK07329 2 RDQHLHTHFSFDSDAKFEDYLTHFD----GEIVTTEHLDLSNPYDTGQDDVPDYAKYSAEIAELNEKYGNRIKKGIEIGY 77 (246)
T ss_pred cccccCCCCCCCCcchHHHHHHHhc----cCeEEecccCCCCCcccccccccCHHHHHHHHHHHHHHhhhhceEEEEeCc
Confidence 5999999999 99999999999995 79999999533 11222 22233445678999999975
Q ss_pred e
Q 018376 139 I 139 (357)
Q Consensus 139 ~ 139 (357)
.
T Consensus 78 ~ 78 (246)
T PRK07329 78 F 78 (246)
T ss_pred c
Confidence 3
No 30
>COG2176 PolC DNA polymerase III, alpha subunit (gram-positive type) [DNA replication, recombination, and repair]
Probab=99.07 E-value=2.8e-10 Score=123.28 Aligned_cols=70 Identities=36% Similarity=0.546 Sum_probs=67.1
Q ss_pred CceEEceeeeCcCC--CCCCCHHHHHHHHHHcCCcEEEEecCCCCCCHHHHHHHHHhcCCeEEEEEEEEeee
Q 018376 71 NNVVFELHSHSNFS--DGYLSPSKLVERAHCNGVKVLALTDHDTMSGIPEAIETARRFGMKIIPGVEISTIF 140 (357)
Q Consensus 71 ~~~~~DLH~HT~~S--DG~~tp~elv~~A~~~Gl~~iaITDHdt~~g~~~~~~~a~~~gi~vi~GiEis~~~ 140 (357)
...++.||.||.+| ||..++++++++|+++|.++||||||+.++.++++..++++.|+++|.|+|.+...
T Consensus 333 ~eKRVELh~HTkMS~mDai~sv~~~vk~A~kwghkaIAITDh~~VqafP~~y~~akK~giK~IyG~Eanlvd 404 (1444)
T COG2176 333 KEKRVELHFHTKMSQMDAITSVEELVKQAKKWGHKAIAITDHGVVQAFPEAYKAAKKYGIKAIYGLEANLVD 404 (1444)
T ss_pred ccceEEEEeccchhhhcccCCHHHHHHHHHHcCCceEEEecCcchhhchHHHHhhhhcCceEEEeeeeeecc
Confidence 35799999999999 99999999999999999999999999999999999999999999999999998864
No 31
>PRK06740 histidinol-phosphatase; Validated
Probab=99.06 E-value=1.7e-09 Score=106.29 Aligned_cols=70 Identities=19% Similarity=0.158 Sum_probs=49.3
Q ss_pred HHHHHHHHHcCCeEEeeCCCCCC-------------ChHHHHHHHHHcCCcEEEeecCC-C--c-H---HHHHHHHHHHh
Q 018376 254 EVAVQLIHRTGGLAVLAHPWALK-------------NPAAIIRKLKDVGLHGLEVYRSD-G--K-L---VDVNFLEKIDN 313 (357)
Q Consensus 254 eevI~~I~~aGGvaVLAHP~~~~-------------~~~~li~~l~~~GlDGIEv~~~~-~--~-~---~~~~~~~lA~~ 313 (357)
+.++++| +.|.+-|+|||...+ ..+++++.+++.| -++|+..+. . . . ....+.++|.+
T Consensus 205 ~~~~~~i-~~~~fdvIgHpDlik~f~~~~~~~~~~~~~~~I~~a~~~~g-~~lEINt~~~~r~~~~e~yP~~~il~~~~e 282 (331)
T PRK06740 205 KTVECAI-RSELFDIIAHLDNIKVFNYRLDENEQLSYYKEIARALVETN-TATEINAGLYYRYPVREMCPSPLFLQVLAK 282 (331)
T ss_pred HHHHHHH-HcCCCCEeeCccHHHhcCCCcchhhhHHHHHHHHHHHHHcC-CEEEEECccccCCCCCCCCcCHHHHHHHHH
Confidence 4566777 588999999997321 1134556677777 799998852 1 1 1 11358899999
Q ss_pred cCCceeecccccCCCC
Q 018376 314 FLLLLCLRQISNCDCA 329 (357)
Q Consensus 314 ~~Ll~t~~~~~GSD~h 329 (357)
+|...+. |||+|
T Consensus 283 ~Gv~~tl----gSDAH 294 (331)
T PRK06740 283 HEVPITL----SSDAH 294 (331)
T ss_pred CCCeEEE----eeCCC
Confidence 9998875 99999
No 32
>COG1379 PHP family phosphoesterase with a Zn ribbon [General function prediction only]
Probab=98.97 E-value=8e-09 Score=99.03 Aligned_cols=79 Identities=23% Similarity=0.297 Sum_probs=59.3
Q ss_pred ceEEceeeeCcCC---CCCCCHHHHHHHHHHcCCcEEEEecCCCCCCHHHHHHHHHh--cC------CeEEEEEEEEeee
Q 018376 72 NVVFELHSHSNFS---DGYLSPSKLVERAHCNGVKVLALTDHDTMSGIPEAIETARR--FG------MKIIPGVEISTIF 140 (357)
Q Consensus 72 ~~~~DLH~HT~~S---DG~~tp~elv~~A~~~Gl~~iaITDHdt~~g~~~~~~~a~~--~g------i~vi~GiEis~~~ 140 (357)
.+..|||+||.|| -..|..+.+++.|+..|++.|+.-|-.......++.++..+ .| ..+|+-+|+.
T Consensus 2 ~~~aDLHiHs~ys~a~S~~m~~~~Ia~~A~~KGl~lvGtgD~~hP~w~e~ik~~~e~~e~g~~e~~~~~fi~t~evE--- 78 (403)
T COG1379 2 QVNADLHIHSHYSGATSKLMVLPNIAEYAKLKGLDLVGTGDCLHPEWLEEIKKSIESDEDGTFEVKGVRFILTAEVE--- 78 (403)
T ss_pred ccccceeeeeccccccccccchHHHHhhhhhcccceecccccCChHHHHHHHHHhhhccccccccceeEEEEEEeec---
Confidence 4678999999999 55799999999999999999999997766655666665543 12 2344444443
Q ss_pred ccCCCCCCCcEEEEEEecc
Q 018376 141 CQRGSESEEPVHILAYYSS 159 (357)
Q Consensus 141 ~~~~~~~g~~vHiLgy~~d 159 (357)
....||+|.+.+.
T Consensus 79 ------d~~rVHhLlilPS 91 (403)
T COG1379 79 ------DSRRVHHLLILPS 91 (403)
T ss_pred ------cCCceeEEEEcCc
Confidence 4568999999853
No 33
>COG4464 CapC Capsular polysaccharide biosynthesis protein [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=97.84 E-value=0.00032 Score=64.49 Aligned_cols=66 Identities=26% Similarity=0.392 Sum_probs=49.4
Q ss_pred EEceeeeCcCC--CCCCCHHH---HHHHHHHcCCcEEEEecCCCCCCH-----------HHHHHHHHh--cCCeEEEEEE
Q 018376 74 VFELHSHSNFS--DGYLSPSK---LVERAHCNGVKVLALTDHDTMSGI-----------PEAIETARR--FGMKIIPGVE 135 (357)
Q Consensus 74 ~~DLH~HT~~S--DG~~tp~e---lv~~A~~~Gl~~iaITDHdt~~g~-----------~~~~~~a~~--~gi~vi~GiE 135 (357)
++|.|||-... ||.-+.++ |+++|.+.|+..+..|-|+--.-| .++.+..++ .++.++||-|
T Consensus 1 MIDIH~HIlp~iDDGp~s~eesl~ml~~A~~qGvt~iVaTsHh~~g~y~n~~~~v~~~~~~ln~~~~~~aidl~v~pGQE 80 (254)
T COG4464 1 MIDIHSHILPDIDDGPKSLEESLAMLREAVRQGVTKIVATSHHLHGRYENPIEKVKEKANQLNEILKKEAIDLKVLPGQE 80 (254)
T ss_pred CccccccccCCCCCCCCcHHHHHHHHHHHHHcCceEEeecccccCCccCChHHHHHHHHHHHHHHHHhhcCCceeccCce
Confidence 47999999886 99988887 677889999999999999743321 112222222 5689999999
Q ss_pred EEee
Q 018376 136 ISTI 139 (357)
Q Consensus 136 is~~ 139 (357)
|...
T Consensus 81 IrIt 84 (254)
T COG4464 81 IRIT 84 (254)
T ss_pred EEEc
Confidence 9874
No 34
>PF12228 DUF3604: Protein of unknown function (DUF3604); InterPro: IPR022028 This family of proteins is found in bacteria. Proteins in this family are typically between 621 and 693 amino acids in length.
Probab=93.38 E-value=0.069 Score=56.17 Aligned_cols=46 Identities=30% Similarity=0.409 Sum_probs=37.7
Q ss_pred ceEEceeeeCcCC-CC-----CCCHHHHHHHHHH--------------cCCcEEEEecCCCCCCHH
Q 018376 72 NVVFELHSHSNFS-DG-----YLSPSKLVERAHC--------------NGVKVLALTDHDTMSGIP 117 (357)
Q Consensus 72 ~~~~DLH~HT~~S-DG-----~~tp~elv~~A~~--------------~Gl~~iaITDHdt~~g~~ 117 (357)
.+..|+|+||.+| |. +.+|++-.+-|+- +=|+++|||||--.-|..
T Consensus 6 ~yfGDlHlHT~~S~DA~~~G~~~~P~dAYRfAkGe~v~~~~G~~vqL~rPLDF~aVTDHaE~lG~~ 71 (592)
T PF12228_consen 6 PYFGDLHLHTSYSFDAYAFGNRLTPDDAYRFAKGEPVTHPSGQPVQLDRPLDFLAVTDHAEFLGEV 71 (592)
T ss_pred ccccccccccccccchhhccCCCCHHHHHHHhcCCcccCCCCCEeeeCCCcceeEEcccHhhhhhH
Confidence 3899999999999 63 5899998888863 347899999998777754
No 35
>COG0084 TatD Mg-dependent DNase [DNA replication, recombination, and repair]
Probab=93.01 E-value=3.4 Score=39.45 Aligned_cols=55 Identities=20% Similarity=0.378 Sum_probs=43.5
Q ss_pred ceEEceeeeCcCCCCCCCHHHHHHHHHHcCCcEEEEecCCCCCCHHHHHHHHHhcC
Q 018376 72 NVVFELHSHSNFSDGYLSPSKLVERAHCNGVKVLALTDHDTMSGIPEAIETARRFG 127 (357)
Q Consensus 72 ~~~~DLH~HT~~SDG~~tp~elv~~A~~~Gl~~iaITDHdt~~g~~~~~~~a~~~g 127 (357)
++.+|-|||-.+..=..+.++++++|++.|+..+.++= .+......+.++++++.
T Consensus 1 ~~liDtH~HL~~~~~~~d~~~vi~~a~~~gv~~~~~~g-~~~~~~~~~~~la~~y~ 55 (256)
T COG0084 1 MMLIDTHCHLDFEEFDEDRDEVIARAREAGVKKMVVVG-TDLEDFKRALELAEKYP 55 (256)
T ss_pred CccEEeeeCCCchhhcCCHHHHHHHHHHcCCcEEEEee-cCHHHHHHHHHHHHhCC
Confidence 47899999999875566899999999999988877765 34445567788888766
No 36
>PF13263 PHP_C: PHP-associated; PDB: 2Z4G_B 2YXO_B 2YZ5_A 3DCP_B.
Probab=90.97 E-value=0.15 Score=37.00 Aligned_cols=20 Identities=15% Similarity=0.092 Sum_probs=14.5
Q ss_pred HHHHHHHhcCCceeecccccCCCC
Q 018376 306 NFLEKIDNFLLLLCLRQISNCDCA 329 (357)
Q Consensus 306 ~~~~lA~~~~Ll~t~~~~~GSD~h 329 (357)
+..++|++++|..++ |||+|
T Consensus 6 ~A~~~A~~~~lp~~~----gSDAH 25 (56)
T PF13263_consen 6 RAAELAEKYGLPFTG----GSDAH 25 (56)
T ss_dssp HHHHHHHHTT--EEE----E--BS
T ss_pred HHHHHHHHcCCCeEe----EEccc
Confidence 578999999999986 99999
No 37
>TIGR00010 hydrolase, TatD family. Several genomes have multiple paralogs related to this family. However, a set of 17 proteins can be found, one each from 17 of the first 20 genomes, such that each member forms a bidirectional best hit across genomes with all other members of the set. This core set (and one other near-perfect member), but not the other paralogs, form the seed for this model. Additionally, members of the seed alignment and all trusted hits, but not all paralogs, have a conserved motif DxHxH near the amino end. The member from E. coli was recently shown to have DNase activity.
Probab=89.34 E-value=0.73 Score=42.44 Aligned_cols=61 Identities=23% Similarity=0.415 Sum_probs=42.4
Q ss_pred EEceeeeCcCCCCCCCHHHHHHHHHHcCCcEEEEecCCCCCCHHHHHHHHHhcCCeEEEEEEE
Q 018376 74 VFELHSHSNFSDGYLSPSKLVERAHCNGVKVLALTDHDTMSGIPEAIETARRFGMKIIPGVEI 136 (357)
Q Consensus 74 ~~DLH~HT~~SDG~~tp~elv~~A~~~Gl~~iaITDHdt~~g~~~~~~~a~~~gi~vi~GiEi 136 (357)
.+|.|||-..+.-..+++++++.+.+.|++.+.++=.+ ..++..+.+.+++.+ ++++++=+
T Consensus 1 ~iD~H~Hl~~~~~~~~~~~~~~~~~~~Gv~~~v~~~~~-~~~~~~~~~~~~~~~-~i~~~~Gi 61 (252)
T TIGR00010 1 LIDAHCHLDFLDFEEDVEEVIERAKAAGVTAVVAVGTD-LEDFLRALELAEKYP-NVYAAVGV 61 (252)
T ss_pred CEEeccCCCChhhccCHHHHHHHHHHcCCCEEEEecCC-HHHHHHHHHHHHHCC-CEEEEEEe
Confidence 37999997544322379999999999999988754323 244566777777777 66665444
No 38
>PF01026 TatD_DNase: TatD related DNase The Pfam entry finds members not in the Prosite definition.; InterPro: IPR001130 This family of proteins are related to a large superfamily of metalloenzymes []. TatD, a member of this family has been shown experimentally to be a DNase enzyme []. Allantoinase 3.5.2.5 from EC, N-isopropylammelide isopropyl amidohydrolase 3.5.1 from EC and the SCN1 protein from fission yeast belong to this family.; GO: 0016888 endodeoxyribonuclease activity, producing 5'-phosphomonoesters; PDB: 3E2V_B 1XWY_A 3GUW_D 3RCM_A 1ZZM_A 2XIO_A 1J6O_A 2GZX_A 3IPW_A 2Y1H_A ....
Probab=83.11 E-value=2.3 Score=40.10 Aligned_cols=62 Identities=19% Similarity=0.323 Sum_probs=43.3
Q ss_pred EceeeeCcCCCCCCCHHHHHHHHHHcCCcEEEEecCCCCCCHHHHHHHHHhcCCeEEEEEEEE
Q 018376 75 FELHSHSNFSDGYLSPSKLVERAHCNGVKVLALTDHDTMSGIPEAIETARRFGMKIIPGVEIS 137 (357)
Q Consensus 75 ~DLH~HT~~SDG~~tp~elv~~A~~~Gl~~iaITDHdt~~g~~~~~~~a~~~gi~vi~GiEis 137 (357)
+|.|||-...+-..+..+++++|.+.|+..++++-.+. ..+....+.+++.+..+++++=|-
T Consensus 1 iD~H~Hl~~~~~~~~~~~~~~~~~~~g~~~~i~~~~~~-~~~~~~~~~~~~~~~~v~~~~GiH 62 (255)
T PF01026_consen 1 IDAHCHLDSPRFEEDRPEVLERAREAGVSAIIIVSTDP-EDWERVLELASQYPDRVYPALGIH 62 (255)
T ss_dssp EEEEE-TTSGGGTTTHHHHHHHHHHTTEEEEEEEESSH-HHHHHHHHHHHHTTTEEEEEE---
T ss_pred CcCccCCCChhhCcCHHHHHHHHHHcCCCEEEEcCCCH-HHhHHHHHHHhcCCCeEEEEecCC
Confidence 68999998843345688888999999999997766544 355666777777777777666554
No 39
>PRK10812 putative DNAse; Provisional
Probab=82.54 E-value=2.9 Score=39.92 Aligned_cols=54 Identities=13% Similarity=0.177 Sum_probs=37.8
Q ss_pred eEEceeeeCc---CCCCCCCHHHHHHHHHHcCCcEEEEecCCCCCCHHHHHHHHHhcC
Q 018376 73 VVFELHSHSN---FSDGYLSPSKLVERAHCNGVKVLALTDHDTMSGIPEAIETARRFG 127 (357)
Q Consensus 73 ~~~DLH~HT~---~SDG~~tp~elv~~A~~~Gl~~iaITDHdt~~g~~~~~~~a~~~g 127 (357)
+.+|-|||-. +++=.-.+++++++|.+.|+..+.++=- +...+.++.++++++.
T Consensus 2 ~~iDtH~Hl~~~~~~~~~~d~~~vl~~a~~~gv~~~~~~~~-~~~~~~~~~~l~~~~~ 58 (265)
T PRK10812 2 FLVDSHCHLDGLDYQSLHKDVDDVLAKAAARDVKFCLAVAT-TLPGYRHMRDLVGERD 58 (265)
T ss_pred ceEEeccCCCCccchhhhcCHHHHHHHHHHcCCCEEEEeCC-CHHHHHHHHHHHhhCC
Confidence 4689999976 3322347899999999999987655432 3445666777777653
No 40
>PRK13125 trpA tryptophan synthase subunit alpha; Provisional
Probab=80.32 E-value=4 Score=38.35 Aligned_cols=62 Identities=16% Similarity=0.096 Sum_probs=47.3
Q ss_pred EceeeeCcCCCCCCCHHHHHHHHHHcCCcEEEEec--CCCCCCHHHHHHHHHhcCCeEEEEEEEEe
Q 018376 75 FELHSHSNFSDGYLSPSKLVERAHCNGVKVLALTD--HDTMSGIPEAIETARRFGMKIIPGVEIST 138 (357)
Q Consensus 75 ~DLH~HT~~SDG~~tp~elv~~A~~~Gl~~iaITD--Hdt~~g~~~~~~~a~~~gi~vi~GiEis~ 138 (357)
+-+|+++.+|+-...|+++++++.+.|.+++.|-| .++..-..++.+.+++.|+.+ |++++.
T Consensus 75 ~Pl~lM~y~n~~~~~~~~~i~~~~~~Gadgvii~dlp~e~~~~~~~~~~~~~~~Gl~~--~~~v~p 138 (244)
T PRK13125 75 VPIILMTYLEDYVDSLDNFLNMARDVGADGVLFPDLLIDYPDDLEKYVEIIKNKGLKP--VFFTSP 138 (244)
T ss_pred CCEEEEEecchhhhCHHHHHHHHHHcCCCEEEECCCCCCcHHHHHHHHHHHHHcCCCE--EEEECC
Confidence 34688999998777999999999999999999954 222334566778888999876 445544
No 41
>PRK11449 putative deoxyribonuclease YjjV; Provisional
Probab=80.31 E-value=3.8 Score=38.94 Aligned_cols=54 Identities=17% Similarity=0.231 Sum_probs=38.3
Q ss_pred eEEceeeeCcCCCCCCCHHHHHHHHHHcCCcEEEEecCCCCCCHHHHHHHHHhcC
Q 018376 73 VVFELHSHSNFSDGYLSPSKLVERAHCNGVKVLALTDHDTMSGIPEAIETARRFG 127 (357)
Q Consensus 73 ~~~DLH~HT~~SDG~~tp~elv~~A~~~Gl~~iaITDHdt~~g~~~~~~~a~~~g 127 (357)
..+|.|||-.++.=..+.++++++|++.|+..+.++=- +...+.++.++++++.
T Consensus 4 ~~iD~HcHl~~~~~~~~~~~~l~~a~~~gv~~~~~~~~-~~~~~~~~~~l~~~~~ 57 (258)
T PRK11449 4 RFIDTHCHFDFPPFSGDEEASLQRAAQAGVGKIIVPAT-EAENFARVLALAERYQ 57 (258)
T ss_pred eEEEeccCCCChhhccCHHHHHHHHHHCCCCEEEEeeC-CHHHHHHHHHHHHhCC
Confidence 46899999876532337889999999999988766432 3445666777776653
No 42
>PRK10425 DNase TatD; Provisional
Probab=78.44 E-value=4.4 Score=38.54 Aligned_cols=53 Identities=21% Similarity=0.288 Sum_probs=37.8
Q ss_pred EEceeeeCcCCCCCCCHHHHHHHHHHcCCcEEEEecCCCCCCHHHHHHHHHhcC
Q 018376 74 VFELHSHSNFSDGYLSPSKLVERAHCNGVKVLALTDHDTMSGIPEAIETARRFG 127 (357)
Q Consensus 74 ~~DLH~HT~~SDG~~tp~elv~~A~~~Gl~~iaITDHdt~~g~~~~~~~a~~~g 127 (357)
.+|-|||-.+..-.-..++++++|++.|+..+.++--+ ...+.++.++++.+.
T Consensus 1 ~iDtH~HL~~~~~~~d~~~vl~~a~~~gv~~~i~~~~~-~~~~~~~~~l~~~~~ 53 (258)
T PRK10425 1 MFDIGVNLTSSQFAKDRDDVVARAFAAGVNGMLITGTN-LRESQQAQKLARQYP 53 (258)
T ss_pred CEEeeeCcCChhhhccHHHHHHHHHHCCCCEEEEeCCC-HHHHHHHHHHHHhCC
Confidence 37999997643333578999999999998777665433 445677777777653
No 43
>COG1902 NemA NADH:flavin oxidoreductases, Old Yellow Enzyme family [Energy production and conversion]
Probab=78.03 E-value=4.7 Score=40.46 Aligned_cols=24 Identities=21% Similarity=0.211 Sum_probs=20.2
Q ss_pred CCHHHHHHHHHHcCCeEE--eeCCCC
Q 018376 251 PLAEVAVQLIHRTGGLAV--LAHPWA 274 (357)
Q Consensus 251 ~~~eevI~~I~~aGGvaV--LAHP~~ 274 (357)
+....+.++||+.||.++ |+|+++
T Consensus 83 ~~~~~vt~avH~~G~~i~iQL~H~Gr 108 (363)
T COG1902 83 PGLKRLTEAVHAHGAKIFIQLWHAGR 108 (363)
T ss_pred HHHHHHHHHHHhcCCeEEEEeccCcc
Confidence 346789999999999887 899984
No 44
>cd01310 TatD_DNAse TatD like proteins; E.coli TatD is a cytoplasmic protein, shown to have magnesium dependent DNase activity.
Probab=76.56 E-value=6.5 Score=35.97 Aligned_cols=59 Identities=20% Similarity=0.367 Sum_probs=38.4
Q ss_pred EEceeeeCcCCCCCCCHHHHHHHHHHcCCcEEEEecCCCCCCHHHHHHHHHhcCCeEEEEE
Q 018376 74 VFELHSHSNFSDGYLSPSKLVERAHCNGVKVLALTDHDTMSGIPEAIETARRFGMKIIPGV 134 (357)
Q Consensus 74 ~~DLH~HT~~SDG~~tp~elv~~A~~~Gl~~iaITDHdt~~g~~~~~~~a~~~gi~vi~Gi 134 (357)
.+|.|||.....+..+++++++.+.+.|+..+.+.--. ......+.+++++. ..+++++
T Consensus 1 ~~D~H~H~~~~~~~~~~~~~l~~~~~~gv~~~v~~~~~-~~~~~~~~~la~~~-~~i~~~~ 59 (251)
T cd01310 1 LIDTHCHLDFPQFDADRDDVLARAREAGVIKIIVVGTD-LKSSKRALELAKKY-DNVYAAV 59 (251)
T ss_pred CEEeeeCCCchhhccCHHHHHHHHHHcCCCEEEEeCCC-HHHHHHHHHHHHhC-CCeEEEE
Confidence 37999998654334688999999999998887776322 11244455555554 3444443
No 45
>cd02930 DCR_FMN 2,4-dienoyl-CoA reductase (DCR) FMN-binding domain. DCR in E. coli is an iron-sulfur flavoenzyme which contains FMN, FAD, and a 4Fe-4S cluster. It is also a monomer, unlike that of its eukaryotic counterparts which form homotetramers and lack the flavin and iron-sulfur cofactors. Metabolism of unsaturated fatty acids requires auxiliary enzymes in addition to those used in b-oxidation. After a given number of cycles through the b-oxidation pathway, those unsaturated fatty acyl-CoAs with double bonds at even-numbered carbon positions contain 2-trans, 4-cis double bonds that can not be modified by enoyl-CoA hydratase. DCR utilizes NADPH to remove the C4-C5 double bond. DCR can catalyze the reduction of both natural fatty acids with cis double bonds, as well as substrates containing trans double bonds. The reaction is initiated by hybrid transfer from NADPH to FAD, which in turn transfers electrons, one at a time, to FMN via the 4Fe-4S cluster. The fully reduced FMN provi
Probab=75.76 E-value=6.8 Score=38.86 Aligned_cols=24 Identities=17% Similarity=0.252 Sum_probs=19.4
Q ss_pred CHHHHHHHHHHcCCeEE--eeCCCCC
Q 018376 252 LAEVAVQLIHRTGGLAV--LAHPWAL 275 (357)
Q Consensus 252 ~~eevI~~I~~aGGvaV--LAHP~~~ 275 (357)
...+++++||+.|+.++ |.|+++.
T Consensus 78 ~~~~l~~~vh~~g~~~~~QL~h~G~~ 103 (353)
T cd02930 78 GHRLITDAVHAEGGKIALQILHAGRY 103 (353)
T ss_pred HHHHHHHHHHHcCCEEEeeccCCCCC
Confidence 46788999999999876 7888763
No 46
>PF10566 Glyco_hydro_97: Glycoside hydrolase 97 ; InterPro: IPR019563 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is the 97th family of glycosidases, in this case bacterial. The central part of the GH97 family protein sequences represents a typical and complete (beta/alpha)8-barrel or catalytic TIM-barrel type domain. The N- and C-terminal parts of the sequences, mainly consisting of beta-strands, most probably form two additional non-catalytic domains with as yet unknown functions. The non-catalytic domains of glycosidases from the alpha-galactosidase and alpha-glucosidase superfamilies are also predominantly composed of beta-strands, and at least some of these domains are involved in oligomerisation and carbohydrate binding. In all known glycosidases with the (beta-alpha)8-barrel fold, the amino acid residues at the active site are located on the C-termini of the beta-strands []. ; PDB: 2JKP_A 2JKE_A 2D73_B 2ZQ0_B 2JKA_A 3A24_A.
Probab=75.04 E-value=9.6 Score=36.78 Aligned_cols=70 Identities=16% Similarity=0.199 Sum_probs=50.3
Q ss_pred CCCHHHHHHHHHHcC-CeEEeeCCCC------C-CChHHHHHHHHHcCCcEEEeec-CCCcHHH----HHHHHHHHhcCC
Q 018376 250 EPLAEVAVQLIHRTG-GLAVLAHPWA------L-KNPAAIIRKLKDVGLHGLEVYR-SDGKLVD----VNFLEKIDNFLL 316 (357)
Q Consensus 250 ~~~~eevI~~I~~aG-GvaVLAHP~~------~-~~~~~li~~l~~~GlDGIEv~~-~~~~~~~----~~~~~lA~~~~L 316 (357)
...++|+|+..++-| ||.++.|=-. + +..++.++.+.+.|+.||=+=. ..+.+.. ..+++-|.+|+|
T Consensus 72 ~~dl~elv~Ya~~KgVgi~lw~~~~~~~~~~~~~~~~~~~f~~~~~~Gv~GvKidF~~~d~Q~~v~~y~~i~~~AA~~~L 151 (273)
T PF10566_consen 72 DFDLPELVDYAKEKGVGIWLWYHSETGGNVANLEKQLDEAFKLYAKWGVKGVKIDFMDRDDQEMVNWYEDILEDAAEYKL 151 (273)
T ss_dssp T--HHHHHHHHHHTT-EEEEEEECCHTTBHHHHHCCHHHHHHHHHHCTEEEEEEE--SSTSHHHHHHHHHHHHHHHHTT-
T ss_pred ccCHHHHHHHHHHcCCCEEEEEeCCcchhhHhHHHHHHHHHHHHHHcCCCEEeeCcCCCCCHHHHHHHHHHHHHHHHcCc
Confidence 467899999999998 8888888533 2 2247788889999999999933 3343322 467889999999
Q ss_pred cee
Q 018376 317 LLC 319 (357)
Q Consensus 317 l~t 319 (357)
++.
T Consensus 152 mvn 154 (273)
T PF10566_consen 152 MVN 154 (273)
T ss_dssp EEE
T ss_pred EEE
Confidence 984
No 47
>PRK09997 hydroxypyruvate isomerase; Provisional
Probab=73.30 E-value=8.2 Score=36.11 Aligned_cols=42 Identities=17% Similarity=0.063 Sum_probs=32.8
Q ss_pred hHHHHHHHHHcCCcEEEeecCCCcHHHHHHHHHHHhcCCceee
Q 018376 278 PAAIIRKLKDVGLHGLEVYRSDGKLVDVNFLEKIDNFLLLLCL 320 (357)
Q Consensus 278 ~~~li~~l~~~GlDGIEv~~~~~~~~~~~~~~lA~~~~Ll~t~ 320 (357)
.++.++.++++|+||||++.+.. .+...+.++++++||-+|.
T Consensus 17 l~~~l~~~a~~Gf~~VEl~~~~~-~~~~~~~~~l~~~gl~~~~ 58 (258)
T PRK09997 17 FLARFEKAAQCGFRGVEFMFPYD-YDIEELKQVLASNKLEHTL 58 (258)
T ss_pred HHHHHHHHHHhCCCEEEEcCCCC-CCHHHHHHHHHHcCCcEEE
Confidence 46688999999999999987543 2223588999999999874
No 48
>PRK13523 NADPH dehydrogenase NamA; Provisional
Probab=71.97 E-value=7.4 Score=38.56 Aligned_cols=25 Identities=32% Similarity=0.264 Sum_probs=19.6
Q ss_pred CCHHHHHHHHHHcCCeEE--eeCCCCC
Q 018376 251 PLAEVAVQLIHRTGGLAV--LAHPWAL 275 (357)
Q Consensus 251 ~~~eevI~~I~~aGGvaV--LAHP~~~ 275 (357)
+...++++.||+.|+.++ |.|+++.
T Consensus 81 ~~~r~l~d~vh~~G~~i~~QL~H~G~~ 107 (337)
T PRK13523 81 EGLHKLVTFIHDHGAKAAIQLAHAGRK 107 (337)
T ss_pred HHHHHHHHHHHhcCCEEEEEccCCCCC
Confidence 345788999999999876 7898763
No 49
>TIGR03234 OH-pyruv-isom hydroxypyruvate isomerase. This enzyme interconverts tartronate semi-aldehyde (TSA, aka 2-hydroxy 3-oxopropionate) and hydroxypyruvate. The E. coli enzyme has been characterized and found to be specific for TSA, contain no cofactors, and have a rather high Km for hydroxypyruvate of 12.5 mM. The gene is ofter found in association with glyoxalate carboligase (which produces TSA), but has been shown to have no effect on growth on glyoxalate when knocked out. This is consistent with the fact that the gene for tartronate semialdehyde reductase (glxR) is also associated and may have primary responsibility for the catabolism of TSA.
Probab=71.88 E-value=7.6 Score=36.10 Aligned_cols=42 Identities=12% Similarity=0.013 Sum_probs=33.0
Q ss_pred hHHHHHHHHHcCCcEEEeecCCCcHHHHHHHHHHHhcCCceee
Q 018376 278 PAAIIRKLKDVGLHGLEVYRSDGKLVDVNFLEKIDNFLLLLCL 320 (357)
Q Consensus 278 ~~~li~~l~~~GlDGIEv~~~~~~~~~~~~~~lA~~~~Ll~t~ 320 (357)
..+.++.++++|+||||++.+.. .....+.++++++||-+++
T Consensus 16 l~e~~~~~~e~G~~~vEl~~~~~-~~~~~l~~~l~~~gl~v~~ 57 (254)
T TIGR03234 16 FLERFAAAAQAGFTGVEYLFPYD-WDAEALKARLAAAGLEQVL 57 (254)
T ss_pred HHHHHHHHHHcCCCEEEecCCcc-CCHHHHHHHHHHcCCeEEE
Confidence 36788888999999999987653 2233588999999998875
No 50
>PRK09989 hypothetical protein; Provisional
Probab=68.12 E-value=13 Score=34.86 Aligned_cols=41 Identities=12% Similarity=0.200 Sum_probs=30.5
Q ss_pred HHHHHHHHHcCCcEEEeecCCCcHHHHHHHHHHHhcCCceee
Q 018376 279 AAIIRKLKDVGLHGLEVYRSDGKLVDVNFLEKIDNFLLLLCL 320 (357)
Q Consensus 279 ~~li~~l~~~GlDGIEv~~~~~~~~~~~~~~lA~~~~Ll~t~ 320 (357)
.+.++.++++|+||||+..+.. .+...+.++.+++||-++.
T Consensus 18 ~~~l~~~~~~Gfd~VEl~~~~~-~~~~~~~~~l~~~Gl~v~~ 58 (258)
T PRK09989 18 IERFAAARKAGFDAVEFLFPYD-YSTLQIQKQLEQNHLTLAL 58 (258)
T ss_pred HHHHHHHHHcCCCEEEECCccc-CCHHHHHHHHHHcCCcEEE
Confidence 5678888999999999866433 1123488889999998875
No 51
>cd01295 AdeC Adenine deaminase (AdeC) directly deaminates adenine to form hypoxanthine. This reaction is part of one of the adenine salvage pathways, as well as the degradation pathway. It is important for adenine utilization as a purine, as well as a nitrogen source in bacteria and archea.
Probab=67.86 E-value=8.2 Score=39.11 Aligned_cols=60 Identities=22% Similarity=0.303 Sum_probs=44.0
Q ss_pred eEEceeeeCcCCCCCCCHHHHHHHHHHcCCcEEEEecCCC--CC---CHHHHHHHHHhcCCeEEEEE
Q 018376 73 VVFELHSHSNFSDGYLSPSKLVERAHCNGVKVLALTDHDT--MS---GIPEAIETARRFGMKIIPGV 134 (357)
Q Consensus 73 ~~~DLH~HT~~SDG~~tp~elv~~A~~~Gl~~iaITDHdt--~~---g~~~~~~~a~~~gi~vi~Gi 134 (357)
-.+|.|+|...|- .+|+++.+.|...|+..+..--|.. +. ++..+.+.+++..+.++..+
T Consensus 10 G~ID~H~Hi~~~~--~~~~~~~~~a~~~GvTtvv~~p~~~~~v~g~~~~~~~~~~a~~~p~~~~~~~ 74 (422)
T cd01295 10 GFIDAHLHIESSM--LTPSEFAKAVLPHGTTTVIADPHEIANVAGVDGIEFMLEDAKKTPLDIFWML 74 (422)
T ss_pred CEEEccCCcCCCC--CChHHHHHHHHCCCcEEEEeCCCCCCcCCCHHHHHHHHHHHhCCCceEEEeC
Confidence 6899999987763 5889999999999999987755543 22 34556666666677666665
No 52
>COG5016 Pyruvate/oxaloacetate carboxyltransferase [Energy production and conversion]
Probab=67.54 E-value=32 Score=35.14 Aligned_cols=50 Identities=26% Similarity=0.453 Sum_probs=38.0
Q ss_pred CHHHHHHHHHHcCCcEEEEecC-CCCCCHHHHHHHHHhcCCeEEEEEEEEe
Q 018376 89 SPSKLVERAHCNGVKVLALTDH-DTMSGIPEAIETARRFGMKIIPGVEIST 138 (357)
Q Consensus 89 tp~elv~~A~~~Gl~~iaITDH-dt~~g~~~~~~~a~~~gi~vi~GiEis~ 138 (357)
-++..+++|.++|++.+=|-|- |.......+.+.+++.|..+.--+-.++
T Consensus 99 vVe~Fv~ka~~nGidvfRiFDAlND~RNl~~ai~a~kk~G~h~q~~i~YT~ 149 (472)
T COG5016 99 VVEKFVEKAAENGIDVFRIFDALNDVRNLKTAIKAAKKHGAHVQGTISYTT 149 (472)
T ss_pred HHHHHHHHHHhcCCcEEEechhccchhHHHHHHHHHHhcCceeEEEEEecc
Confidence 4678899999999999999885 4556667777888888876655554444
No 53
>PRK10605 N-ethylmaleimide reductase; Provisional
Probab=66.64 E-value=13 Score=37.12 Aligned_cols=13 Identities=15% Similarity=0.353 Sum_probs=10.7
Q ss_pred HHHcCCcEEEeec
Q 018376 285 LKDVGLHGLEVYR 297 (357)
Q Consensus 285 l~~~GlDGIEv~~ 297 (357)
+.++|+||||+.-
T Consensus 168 A~~AGfDGVEIh~ 180 (362)
T PRK10605 168 AREAGFDLVELHS 180 (362)
T ss_pred HHHcCCCEEEEcc
Confidence 4678999999964
No 54
>cd04747 OYE_like_5_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 5. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=65.92 E-value=15 Score=36.86 Aligned_cols=23 Identities=30% Similarity=0.228 Sum_probs=17.6
Q ss_pred CHHHHHHHHHHcCCeEE--eeCCCC
Q 018376 252 LAEVAVQLIHRTGGLAV--LAHPWA 274 (357)
Q Consensus 252 ~~eevI~~I~~aGGvaV--LAHP~~ 274 (357)
...++++.||+.|+.++ |.|+++
T Consensus 79 ~~~~l~d~vh~~Ga~i~~QL~H~Gr 103 (361)
T cd04747 79 GWKKVVDEVHAAGGKIAPQLWHVGA 103 (361)
T ss_pred HHHHHHHHHHhcCCEEEEeccCCCC
Confidence 35678889999988876 678765
No 55
>cd04735 OYE_like_4_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 4. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=63.91 E-value=17 Score=36.16 Aligned_cols=23 Identities=22% Similarity=0.157 Sum_probs=17.2
Q ss_pred CHHHHHHHHHHcCCeEE--eeCCCC
Q 018376 252 LAEVAVQLIHRTGGLAV--LAHPWA 274 (357)
Q Consensus 252 ~~eevI~~I~~aGGvaV--LAHP~~ 274 (357)
....++++||+.|+.++ |.|+++
T Consensus 79 ~~~~l~~~vh~~G~~i~~QL~h~G~ 103 (353)
T cd04735 79 GLRKLAQAIKSKGAKAILQIFHAGR 103 (353)
T ss_pred HHHHHHHHHHhCCCeEEEEecCCCC
Confidence 35678888888888866 677764
No 56
>PRK12581 oxaloacetate decarboxylase; Provisional
Probab=63.38 E-value=39 Score=35.12 Aligned_cols=48 Identities=17% Similarity=0.268 Sum_probs=36.1
Q ss_pred HHHHHHHHHHcCCcEEEEecCC-CCCCHHHHHHHHHhcCCeEEEEEEEE
Q 018376 90 PSKLVERAHCNGVKVLALTDHD-TMSGIPEAIETARRFGMKIIPGVEIS 137 (357)
Q Consensus 90 p~elv~~A~~~Gl~~iaITDHd-t~~g~~~~~~~a~~~gi~vi~GiEis 137 (357)
.+..++.|.++|++.+=|.||= .+.....+.+.+++.|..+...+-.+
T Consensus 107 v~~fv~~a~~~Gidi~Rifd~lnd~~n~~~ai~~ak~~G~~~~~~i~yt 155 (468)
T PRK12581 107 VDKFISLSAQNGIDVFRIFDALNDPRNIQQALRAVKKTGKEAQLCIAYT 155 (468)
T ss_pred HHHHHHHHHHCCCCEEEEcccCCCHHHHHHHHHHHHHcCCEEEEEEEEE
Confidence 4457889999999999999984 45566777788888888766433333
No 57
>cd04734 OYE_like_3_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 3. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase. One member of this subgroup, the Sinorhizobium meliloti stachydrine utilization protein stcD, has been idenified as a putative N-methylproline demethylase.
Probab=62.79 E-value=17 Score=35.98 Aligned_cols=22 Identities=18% Similarity=0.261 Sum_probs=17.0
Q ss_pred HHHHHHHHHHcCCeEE--eeCCCC
Q 018376 253 AEVAVQLIHRTGGLAV--LAHPWA 274 (357)
Q Consensus 253 ~eevI~~I~~aGGvaV--LAHP~~ 274 (357)
...+++.||+.|+.++ |.|+++
T Consensus 79 ~~~l~~~vh~~g~~~~~Ql~H~G~ 102 (343)
T cd04734 79 FRRLAEAVHAHGAVIMIQLTHLGR 102 (343)
T ss_pred HHHHHHHHHhcCCeEEEeccCCCc
Confidence 4678889999888766 778764
No 58
>PRK07228 N-ethylammeline chlorohydrolase; Provisional
Probab=61.88 E-value=23 Score=35.87 Aligned_cols=63 Identities=17% Similarity=0.199 Sum_probs=43.9
Q ss_pred eEEceeeeCcCCC--C--------------------CCCHHHHHHHHH-------HcCCcEEEEecCCCCCCHHHHHHHH
Q 018376 73 VVFELHSHSNFSD--G--------------------YLSPSKLVERAH-------CNGVKVLALTDHDTMSGIPEAIETA 123 (357)
Q Consensus 73 ~~~DLH~HT~~SD--G--------------------~~tp~elv~~A~-------~~Gl~~iaITDHdt~~g~~~~~~~a 123 (357)
-+||.|+|...+. | .++|+++...|. ..|+..+ -||.+........+.+
T Consensus 57 GlId~H~H~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~e~L~~GvTtv--~d~~~~~~~~~~~~a~ 134 (445)
T PRK07228 57 GLIQGHIHLCQTLFRGIADDLELLDWLKDRIWPLEAAHDAESMYYSALLGIGELIESGTTTI--VDMESVHHTDSAFEAA 134 (445)
T ss_pred CEEecccCCccccceeccCCCCHHHHHHhhhhhhhhhCCHHHHHHHHHHHHHHHHhcCceEE--EccccccChHHHHHHH
Confidence 5999999987641 1 145666655555 7887654 4887665556667777
Q ss_pred HhcCCeEEEEEEEE
Q 018376 124 RRFGMKIIPGVEIS 137 (357)
Q Consensus 124 ~~~gi~vi~GiEis 137 (357)
.+.|++.+.|.++.
T Consensus 135 ~~~g~r~~~~~~~~ 148 (445)
T PRK07228 135 GESGIRAVLGKVMM 148 (445)
T ss_pred HHcCCeEEEeccee
Confidence 78899888877664
No 59
>cd02803 OYE_like_FMN_family Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=60.50 E-value=13 Score=36.09 Aligned_cols=14 Identities=29% Similarity=0.676 Sum_probs=11.2
Q ss_pred HHHHcCCcEEEeec
Q 018376 284 KLKDVGLHGLEVYR 297 (357)
Q Consensus 284 ~l~~~GlDGIEv~~ 297 (357)
.+.++|+||||+.-
T Consensus 149 ~a~~aGfDgveih~ 162 (327)
T cd02803 149 RAKEAGFDGVEIHG 162 (327)
T ss_pred HHHHcCCCEEEEcc
Confidence 35678999999964
No 60
>PRK09856 fructoselysine 3-epimerase; Provisional
Probab=60.35 E-value=26 Score=32.75 Aligned_cols=43 Identities=12% Similarity=0.169 Sum_probs=32.0
Q ss_pred hHHHHHHHHHcCCcEEEeecCC----C---c-HHHHHHHHHHHhcCCceee
Q 018376 278 PAAIIRKLKDVGLHGLEVYRSD----G---K-LVDVNFLEKIDNFLLLLCL 320 (357)
Q Consensus 278 ~~~li~~l~~~GlDGIEv~~~~----~---~-~~~~~~~~lA~~~~Ll~t~ 320 (357)
..+.++.++++|++|||++... . . .....+.++++++||-++.
T Consensus 15 l~~~l~~~~~~G~~~vEl~~~~~~~~~~~~~~~~~~~l~~~~~~~gl~v~s 65 (275)
T PRK09856 15 IEHAFRDASELGYDGIEIWGGRPHAFAPDLKAGGIKQIKALAQTYQMPIIG 65 (275)
T ss_pred HHHHHHHHHHcCCCEEEEccCCccccccccCchHHHHHHHHHHHcCCeEEE
Confidence 4678899999999999997431 1 1 1224688999999998765
No 61
>cd04733 OYE_like_2_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 2. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=59.93 E-value=22 Score=35.03 Aligned_cols=23 Identities=22% Similarity=0.150 Sum_probs=16.0
Q ss_pred CHHHHHHHHHHcCCeEE--eeCCCC
Q 018376 252 LAEVAVQLIHRTGGLAV--LAHPWA 274 (357)
Q Consensus 252 ~~eevI~~I~~aGGvaV--LAHP~~ 274 (357)
....++++||+.|+.++ |.|.++
T Consensus 83 ~~~~l~~~vh~~G~~~~~Ql~h~G~ 107 (338)
T cd04733 83 AFREWAAAAKANGALIWAQLNHPGR 107 (338)
T ss_pred HHHHHHHHHHhcCCEEEEEccCCCc
Confidence 35677888888888866 466443
No 62
>PF02679 ComA: (2R)-phospho-3-sulfolactate synthase (ComA); InterPro: IPR003830 Methanogenic archaea produce methane via the anaerobic reduction of acetate or single carbon compounds []. Coenzyme M (CoM; 2-mercaptoethanesulphonic acid) serves as the terminal methyl carrier for this process. Previously thought to be unique to methanogenic archaea, CoM has also been found in methylotrophic bacteria. Biosynthesis of CoM begins with the Michael addition of sulphite to phosphoenolpyruvate, forming 2-phospho-3-sulpholactate (PSL). This reaction is catalyzed by members of this family, PSL synthase (ComA) []. Subsequently, PSL is dephosphorylated by phosphosulpholactate phosphatase (ComB) to form 3-sulpholactate [], which is then converted to 3-sulphopyruvate by L-sulpholactate dehydrogenase (ComC; 1.1.1.272 from EC) []. Sulphopyruvate decarboxylase (ComDE; 4.1.1.79 from EC) converts 3-sulphopyruvate to sulphoacetaldehyde []. Reductive thiolation of sulphoacetaldehyde is the final step.; GO: 0019295 coenzyme M biosynthetic process; PDB: 1U83_A 1QWG_A.
Probab=59.07 E-value=22 Score=33.79 Aligned_cols=67 Identities=12% Similarity=0.169 Sum_probs=42.4
Q ss_pred HHHHHHHHHHcCCeEEeeCCC-----CCCChHHHHHHHHHcCCcEEEeecCCCcH--HH-HHHHHHHHhcCCcee
Q 018376 253 AEVAVQLIHRTGGLAVLAHPW-----ALKNPAAIIRKLKDVGLHGLEVYRSDGKL--VD-VNFLEKIDNFLLLLC 319 (357)
Q Consensus 253 ~eevI~~I~~aGGvaVLAHP~-----~~~~~~~li~~l~~~GlDGIEv~~~~~~~--~~-~~~~~lA~~~~Ll~t 319 (357)
+.+.|++.|++|=.+..-.-. .....++.+++.+++|++.||+....-+. +. ..+.+.|++.|+.+-
T Consensus 56 l~eki~l~~~~gV~v~~GGtl~E~a~~q~~~~~yl~~~k~lGf~~IEiSdGti~l~~~~r~~~I~~~~~~Gf~v~ 130 (244)
T PF02679_consen 56 LKEKIDLAHSHGVYVYPGGTLFEVAYQQGKFDEYLEECKELGFDAIEISDGTIDLPEEERLRLIRKAKEEGFKVL 130 (244)
T ss_dssp HHHHHHHHHCTT-EEEE-HHHHHHHHHTT-HHHHHHHHHHCT-SEEEE--SSS---HHHHHHHHHHHCCTTSEEE
T ss_pred HHHHHHHHHHcCCeEeCCcHHHHHHHhcChHHHHHHHHHHcCCCEEEecCCceeCCHHHHHHHHHHHHHCCCEEe
Confidence 789999999887333321110 01233678899999999999999976543 22 368899999998853
No 63
>PLN02411 12-oxophytodienoate reductase
Probab=58.95 E-value=25 Score=35.57 Aligned_cols=14 Identities=21% Similarity=0.465 Sum_probs=11.2
Q ss_pred HHHcCCcEEEeecC
Q 018376 285 LKDVGLHGLEVYRS 298 (357)
Q Consensus 285 l~~~GlDGIEv~~~ 298 (357)
++++|+||||+.-.
T Consensus 174 A~~AGFDGVEIH~A 187 (391)
T PLN02411 174 AIRAGFDGIEIHGA 187 (391)
T ss_pred HHHcCCCEEEEccc
Confidence 46789999999753
No 64
>cd02933 OYE_like_FMN Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include 12-oxophytodienoate reductase, pentaerythritol tetranitrate reductase, morphinone reductase, and related enzymes.
Probab=58.91 E-value=22 Score=35.11 Aligned_cols=22 Identities=23% Similarity=0.225 Sum_probs=14.6
Q ss_pred HHHHHHHHHHcCCeEE--eeCCCC
Q 018376 253 AEVAVQLIHRTGGLAV--LAHPWA 274 (357)
Q Consensus 253 ~eevI~~I~~aGGvaV--LAHP~~ 274 (357)
...+++.||+.|+.++ |.|+++
T Consensus 79 lr~la~~vh~~ga~~~~QL~H~G~ 102 (338)
T cd02933 79 WKKVTDAVHAKGGKIFLQLWHVGR 102 (338)
T ss_pred HHHHHHHHHhcCCeEEEEcccCcc
Confidence 4567777788777655 667553
No 65
>cd02932 OYE_YqiM_FMN Old yellow enzyme (OYE) YqjM-like FMN binding domain. YqjM is involved in the oxidative stress response of Bacillus subtilis. Like the other OYE members, each monomer of YqjM contains FMN as a non-covalently bound cofactor and uses NADPH as a reducing agent. The YqjM enzyme exists as a homotetramer that is assembled as a dimer of catalytically dependent dimers, while other OYE members exist only as monomers or dimers. Moreover, the protein displays a shared active site architecture where an arginine finger at the COOH terminus of one monomer extends into the active site of the adjacent monomer and is directly involved in substrate recognition. Another remarkable difference in the binding of the ligand in YqjM is represented by the contribution of the NH2-terminal tyrosine instead of a COOH-terminal tyrosine in OYE and its homologs.
Probab=58.08 E-value=18 Score=35.56 Aligned_cols=23 Identities=30% Similarity=0.307 Sum_probs=16.8
Q ss_pred CHHHHHHHHHHcCCeEE--eeCCCC
Q 018376 252 LAEVAVQLIHRTGGLAV--LAHPWA 274 (357)
Q Consensus 252 ~~eevI~~I~~aGGvaV--LAHP~~ 274 (357)
....++++||+.|+.++ |.|+++
T Consensus 78 ~~~~l~~~vh~~G~~~~~QL~H~G~ 102 (336)
T cd02932 78 ALKRIVDFIHSQGAKIGIQLAHAGR 102 (336)
T ss_pred HHHHHHHHHHhcCCcEEEEccCCCc
Confidence 35678888888888866 667654
No 66
>TIGR01501 MthylAspMutase methylaspartate mutase, S subunit. This model represents the S (sigma) subunit of methylaspartate mutase (glutamate mutase), a cobalamin-dependent enzyme that catalyzes the first step in a pathway of glutamate fermentation.
Probab=57.37 E-value=33 Score=29.52 Aligned_cols=41 Identities=5% Similarity=0.033 Sum_probs=33.4
Q ss_pred CCHHHHHHHHHHcCCcEEEEecCCCCCC--HHHHHHHHHhcCC
Q 018376 88 LSPSKLVERAHCNGVKVLALTDHDTMSG--IPEAIETARRFGM 128 (357)
Q Consensus 88 ~tp~elv~~A~~~Gl~~iaITDHdt~~g--~~~~~~~a~~~gi 128 (357)
.+|+++++.|++.+.++++++-..+..- ..+..+.+++.|+
T Consensus 39 v~~e~~v~aa~~~~adiVglS~l~~~~~~~~~~~~~~l~~~gl 81 (134)
T TIGR01501 39 SPQEEFIKAAIETKADAILVSSLYGHGEIDCKGLRQKCDEAGL 81 (134)
T ss_pred CCHHHHHHHHHHcCCCEEEEecccccCHHHHHHHHHHHHHCCC
Confidence 6999999999999999999999876543 5666666777665
No 67
>PRK13209 L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=57.19 E-value=30 Score=32.54 Aligned_cols=43 Identities=7% Similarity=-0.011 Sum_probs=29.9
Q ss_pred hHHHHHHHHHcCCcEEEeecCCC---------cH-HHHHHHHHHHhcCCceee
Q 018376 278 PAAIIRKLKDVGLHGLEVYRSDG---------KL-VDVNFLEKIDNFLLLLCL 320 (357)
Q Consensus 278 ~~~li~~l~~~GlDGIEv~~~~~---------~~-~~~~~~~lA~~~~Ll~t~ 320 (357)
..+.++.++++|++|||+..... +. +...+.++++++||-++.
T Consensus 23 ~~e~~~~~~~~G~~~iEl~~~~~~~~~~~~~~~~~~~~~l~~~l~~~gl~i~~ 75 (283)
T PRK13209 23 WLEKLAIAKTAGFDFVEMSVDESDERLARLDWSREQRLALVNALVETGFRVNS 75 (283)
T ss_pred HHHHHHHHHHcCCCeEEEecCccccchhccCCCHHHHHHHHHHHHHcCCceeE
Confidence 35678888888999999875321 12 224678888899998764
No 68
>COG0826 Collagenase and related proteases [Posttranslational modification, protein turnover, chaperones]
Probab=57.10 E-value=26 Score=34.92 Aligned_cols=61 Identities=21% Similarity=0.227 Sum_probs=43.3
Q ss_pred CHHHHHHHHHHcCC-eEE----eeCCCCCCChHHHHHHHHHcCCcEEEeecCCCcHHHHHHHHHHHhcC--Ccee
Q 018376 252 LAEVAVQLIHRTGG-LAV----LAHPWALKNPAAIIRKLKDVGLHGLEVYRSDGKLVDVNFLEKIDNFL--LLLC 319 (357)
Q Consensus 252 ~~eevI~~I~~aGG-vaV----LAHP~~~~~~~~li~~l~~~GlDGIEv~~~~~~~~~~~~~~lA~~~~--Ll~t 319 (357)
.++++|+..|++|= +-| +.|+.........++.|.+.|+|+|++.-+. +..++++.+ |..+
T Consensus 50 ~l~e~i~~ah~~gkk~~V~~N~~~~~~~~~~~~~~l~~l~e~GvDaviv~Dpg-------~i~l~~e~~p~l~ih 117 (347)
T COG0826 50 DLAEAVELAHSAGKKVYVAVNTLLHNDELETLERYLDRLVELGVDAVIVADPG-------LIMLARERGPDLPIH 117 (347)
T ss_pred HHHHHHHHHHHcCCeEEEEeccccccchhhHHHHHHHHHHHcCCCEEEEcCHH-------HHHHHHHhCCCCcEE
Confidence 47899999999998 333 4455433333568889999999999998863 556666655 5543
No 69
>TIGR00640 acid_CoA_mut_C methylmalonyl-CoA mutase C-terminal domain. Methylmalonyl-CoA mutase (EC 5.4.99.2) catalyzes a reversible isomerization between L-methylmalonyl-CoA and succinyl-CoA. The enzyme uses an adenosylcobalamin cofactor. It may be a homodimer, as in mitochondrion, or a heterodimer with partially homologous beta chain that does not bind the adenosylcobalamin cofactor, as in Propionibacterium freudenreichii. The most similar archaeal sequences are separate chains, such as AF2215 and AF2219 of Archaeoglobus fulgidus, that correspond roughly to the first 500 and last 130 residues, respectively of known methylmalonyl-CoA mutases. This model describes the C-terminal domain subfamily. In a neighbor-joining tree (methylaspartate mutase S chain as the outgroup), AF2219 branches with a coenzyme B12-dependent enzyme known not to be 5.4.99.2.
Probab=56.55 E-value=24 Score=30.13 Aligned_cols=42 Identities=14% Similarity=0.253 Sum_probs=31.5
Q ss_pred CCCCHHHHHHHHHHcCCcEEEEecCCCCC--CHHHHHHHHHhcC
Q 018376 86 GYLSPSKLVERAHCNGVKVLALTDHDTMS--GIPEAIETARRFG 127 (357)
Q Consensus 86 G~~tp~elv~~A~~~Gl~~iaITDHdt~~--g~~~~~~~a~~~g 127 (357)
+..||+++++.|.+.+.+.++|+=.++.+ ..+++.+..++.+
T Consensus 38 ~~~s~e~~v~aa~e~~adii~iSsl~~~~~~~~~~~~~~L~~~g 81 (132)
T TIGR00640 38 LFQTPEEIARQAVEADVHVVGVSSLAGGHLTLVPALRKELDKLG 81 (132)
T ss_pred CCCCHHHHHHHHHHcCCCEEEEcCchhhhHHHHHHHHHHHHhcC
Confidence 45799999999999999999998877433 3455555555543
No 70
>PRK09358 adenosine deaminase; Provisional
Probab=56.21 E-value=11 Score=37.01 Aligned_cols=29 Identities=41% Similarity=0.603 Sum_probs=26.2
Q ss_pred eEEceeeeCcCCCCCCCHHHHHHHHHHcCCcE
Q 018376 73 VVFELHSHSNFSDGYLSPSKLVERAHCNGVKV 104 (357)
Q Consensus 73 ~~~DLH~HT~~SDG~~tp~elv~~A~~~Gl~~ 104 (357)
.+++||+|- ||+++|+.+.+.|+++|++.
T Consensus 11 pK~eLH~Hl---~Gs~~~~~l~~l~~~~~~~~ 39 (340)
T PRK09358 11 PKAELHLHL---DGSLRPETILELARRNGIAL 39 (340)
T ss_pred CceeEEecc---cCCCCHHHHHHHHHHcCCCC
Confidence 589999997 78899999999999999874
No 71
>PF00724 Oxidored_FMN: NADH:flavin oxidoreductase / NADH oxidase family; InterPro: IPR001155 The TIM-barrel fold is a closed barrel structure composed of an eight-fold repeat of beta-alpha units, where the eight parallel beta strands on the inside are covered by the eight alpha helices on the outside []. It is a widely distributed fold which has been found in many enzyme families that catalyse completely unrelated reactions []. The active site is always found at the C-terminal end of this domain. Proteins in this entry are a variety of NADH:flavin oxidoreductase/NADH oxidase enzymes, found mostly in bacteria or fungi, that contain a TIM-barrel fold. They commonly use FMN/FAD as cofactor and include: dimethylamine dehydrogenase trimethylamine dehydrogenase 12-oxophytodienoate reductase NADPH dehydrogenase NADH oxidase ; GO: 0010181 FMN binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3GKA_B 3P67_A 3F03_K 2ABA_A 1VYR_A 1GVO_A 3KFT_B 3P8I_A 1GVQ_A 3P74_A ....
Probab=55.73 E-value=37 Score=33.46 Aligned_cols=23 Identities=17% Similarity=0.148 Sum_probs=17.0
Q ss_pred CHHHHHHHHHHcCCeEE--eeCCCC
Q 018376 252 LAEVAVQLIHRTGGLAV--LAHPWA 274 (357)
Q Consensus 252 ~~eevI~~I~~aGGvaV--LAHP~~ 274 (357)
....++++||+.|+.++ |.|+++
T Consensus 81 ~~k~l~~~vh~~Ga~i~~QL~H~G~ 105 (341)
T PF00724_consen 81 GLKKLADAVHAHGAKIIAQLWHAGR 105 (341)
T ss_dssp HHHHHHHHHHHTTSEEEEEEE--GG
T ss_pred HHHHHHHHHHhcCccceeecccccc
Confidence 35689999999999988 588763
No 72
>cd02929 TMADH_HD_FMN Trimethylamine dehydrogenase (TMADH) and histamine dehydrogenase (HD) FMN-binding domain. TMADH is an iron-sulfur flavoprotein that catalyzes the oxidative demethylation of trimethylamine to form dimethylamine and formaldehyde. The protein forms a symetrical dimer with each subunit containing one 4Fe-4S cluster and one FMN cofactor. It contains a unique flavin, in the form of a 6-S-cysteinyl FMN which is bent by ~25 degrees along the N5-N10 axis of the flavin isoalloxazine ring. This modification of the conformation of the flavin is thought to facilitate catalysis.The closely related histamine dehydrogenase catalyzes oxidative deamination of histamine.
Probab=55.44 E-value=28 Score=34.84 Aligned_cols=22 Identities=32% Similarity=0.347 Sum_probs=15.2
Q ss_pred HHHHHHHHHHcCCeEE--eeCCCC
Q 018376 253 AEVAVQLIHRTGGLAV--LAHPWA 274 (357)
Q Consensus 253 ~eevI~~I~~aGGvaV--LAHP~~ 274 (357)
...++++||+.|+.++ |.|+++
T Consensus 85 ~~~l~~~vh~~G~~i~~QL~H~G~ 108 (370)
T cd02929 85 LAAMTDAVHKHGALAGIELWHGGA 108 (370)
T ss_pred HHHHHHHHHHCCCeEEEecccCCC
Confidence 4567788888887655 667654
No 73
>cd02931 ER_like_FMN Enoate reductase (ER)-like FMN-binding domain. Enoate reductase catalyzes the NADH-dependent reduction of carbon-carbon double bonds of several molecules, including nonactivated 2-enoates, alpha,beta-unsaturated aldehydes, cyclic ketones, and methylketones. ERs are similar to 2,4-dienoyl-CoA reductase from E. coli and to the old yellow enzyme from Saccharomyces cerevisiae.
Probab=55.41 E-value=24 Score=35.47 Aligned_cols=21 Identities=19% Similarity=0.172 Sum_probs=15.5
Q ss_pred CHHHHHHHHHHcCCeEE--eeCC
Q 018376 252 LAEVAVQLIHRTGGLAV--LAHP 272 (357)
Q Consensus 252 ~~eevI~~I~~aGGvaV--LAHP 272 (357)
....++++||+.|+.++ |.|.
T Consensus 84 ~~k~l~davh~~G~~i~~QL~H~ 106 (382)
T cd02931 84 TAKEMTERVHAYGTKIFLQLTAG 106 (382)
T ss_pred HHHHHHHHHHHcCCEEEEEccCc
Confidence 35678888888888866 5674
No 74
>COG2355 Zn-dependent dipeptidase, microsomal dipeptidase homolog [Amino acid transport and metabolism]
Probab=54.88 E-value=61 Score=31.93 Aligned_cols=61 Identities=20% Similarity=0.128 Sum_probs=33.2
Q ss_pred HHHHHHHHHcCCe-EEeeCCCCCCChHHHHHHHHHcCCcEEEeecCCCcHHH--HHHHHHHHhcCCceeecccccCCCCC
Q 018376 254 EVAVQLIHRTGGL-AVLAHPWALKNPAAIIRKLKDVGLHGLEVYRSDGKLVD--VNFLEKIDNFLLLLCLRQISNCDCAL 330 (357)
Q Consensus 254 eevI~~I~~aGGv-aVLAHP~~~~~~~~li~~l~~~GlDGIEv~~~~~~~~~--~~~~~lA~~~~Ll~t~~~~~GSD~h~ 330 (357)
.+.+++|.+.||+ .|-++|..... |- .+.-+.+. +.+..+++..|+-..+ + |||+..
T Consensus 205 D~qlkaI~~~gGvIgv~~~~~fl~~-----------~~------~~~atldd~v~hI~h~v~~~G~dhVg--l-GsDf~g 264 (313)
T COG2355 205 DEQLKAIAETGGVIGVNFIPAFLRP-----------GG------AARATLDDLVRHIDHFVELVGIDHVG--L-GSDFDG 264 (313)
T ss_pred HHHHHHHHhcCCEEEEEeehhhccC-----------CC------CCCCCHHHHHHHHHHHHHhcCcceeE--e-cccccC
Confidence 5677888888887 45666643221 00 11112222 2455666666655544 2 788886
Q ss_pred CCCC
Q 018376 331 YPYP 334 (357)
Q Consensus 331 ~~~~ 334 (357)
.+.|
T Consensus 265 ~~~~ 268 (313)
T COG2355 265 GTGP 268 (313)
T ss_pred CCCC
Confidence 5554
No 75
>cd01292 metallo-dependent_hydrolases Superfamily of metallo-dependent hydrolases (also called amidohydrolase superfamily) is a large group of proteins that show conservation in their 3-dimensional fold (TIM barrel) and in details of their active site. The vast majority of the members have a conserved metal binding site, involving four histidines and one aspartic acid residue. In the common reaction mechanism, the metal ion (or ions) deprotonate a water molecule for a nucleophilic attack on the substrate. The family includes urease alpha, adenosine deaminase, phosphotriesterase dihydroorotases, allantoinases, hydantoinases, AMP-, adenine and cytosine deaminases, imidazolonepropionase, aryldialkylphosphatase, chlorohydrolases, formylmethanofuran dehydrogenases and others.
Probab=54.08 E-value=12 Score=33.76 Aligned_cols=70 Identities=26% Similarity=0.330 Sum_probs=40.5
Q ss_pred HHHHHHHHHHcCCeEEeeCCCCCCChHHHHHHHHHcCCcEEEeecCCCcH-----HHHHHHHHHHhcCCceeecccccCC
Q 018376 253 AEVAVQLIHRTGGLAVLAHPWALKNPAAIIRKLKDVGLHGLEVYRSDGKL-----VDVNFLEKIDNFLLLLCLRQISNCD 327 (357)
Q Consensus 253 ~eevI~~I~~aGGvaVLAHP~~~~~~~~li~~l~~~GlDGIEv~~~~~~~-----~~~~~~~lA~~~~Ll~t~~~~~GSD 327 (357)
++++++.... |+..+++|.... ....+..+++.|+ .+++....... ........+.+.|..++. |||
T Consensus 163 ~~~~~~~~~~-~~~~~~~H~~~~--~~~~~~~~~~~g~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l----gTD 234 (275)
T cd01292 163 LEDLVALLRL-GGRVVIGHVSHL--DPELLELLKEAGV-SLEVCPLSNYLLGRDGEGAEALRRLLELGIRVTL----GTD 234 (275)
T ss_pred HHHHHHHHhc-CCCEEEECCccC--CHHHHHHHHHcCC-eEEECCcccccccCCcCCcccHHHHHHCCCcEEE----ecC
Confidence 5666666554 788899998764 2456777777773 45654432211 111122334555655553 899
Q ss_pred CCC
Q 018376 328 CAL 330 (357)
Q Consensus 328 ~h~ 330 (357)
...
T Consensus 235 ~~~ 237 (275)
T cd01292 235 GPP 237 (275)
T ss_pred CCC
Confidence 864
No 76
>cd04726 KGPDC_HPS 3-Keto-L-gulonate 6-phosphate decarboxylase (KGPDC) and D-arabino-3-hexulose-6-phosphate synthase (HPS). KGPDC catalyzes the formation of L-xylulose 5-phosphate and carbon dioxide from 3-keto-L-gulonate 6-phosphate as part of the anaerobic pathway for L-ascorbate utilization in some eubacteria. HPS catalyzes the formation of D-arabino-3-hexulose-6-phosphate from D-ribulose 5-phosphate and formaldehyde in microorganisms that can use formaldehyde as a carbon source. Both catalyze reactions that involve the Mg2+-assisted formation and stabilization of 1,2-enediolate reaction intermediates.
Probab=53.89 E-value=51 Score=29.33 Aligned_cols=63 Identities=10% Similarity=-0.054 Sum_probs=25.7
Q ss_pred HHHHHHHHc-CCeEEeeCCCCCCChHHHHHHHHHcCCcEEEeecCCCcHHHHHHHHHHHhcCCc
Q 018376 255 VAVQLIHRT-GGLAVLAHPWALKNPAAIIRKLKDVGLHGLEVYRSDGKLVDVNFLEKIDNFLLL 317 (357)
Q Consensus 255 evI~~I~~a-GGvaVLAHP~~~~~~~~li~~l~~~GlDGIEv~~~~~~~~~~~~~~lA~~~~Ll 317 (357)
++|+.+++. .++++.+|-.-.......++.+.++|.|+|=+...........+.+.|+++|+.
T Consensus 42 ~~i~~i~~~~~~~~i~~~~~v~~~~~~~~~~~~~aGad~i~~h~~~~~~~~~~~i~~~~~~g~~ 105 (202)
T cd04726 42 EAVRALREAFPDKIIVADLKTADAGALEAEMAFKAGADIVTVLGAAPLSTIKKAVKAAKKYGKE 105 (202)
T ss_pred HHHHHHHHHCCCCEEEEEEEeccccHHHHHHHHhcCCCEEEEEeeCCHHHHHHHHHHHHHcCCe
Confidence 344444443 345555553211111122344555555555554432221112344555555544
No 77
>PLN03059 beta-galactosidase; Provisional
Probab=52.71 E-value=29 Score=38.55 Aligned_cols=50 Identities=24% Similarity=0.212 Sum_probs=36.1
Q ss_pred CCCCCCC--hHHHHHHHHHcCCcEEEeecC--CCc-----------HHHHHHHHHHHhcCCceee
Q 018376 271 HPWALKN--PAAIIRKLKDVGLHGLEVYRS--DGK-----------LVDVNFLEKIDNFLLLLCL 320 (357)
Q Consensus 271 HP~~~~~--~~~li~~l~~~GlDGIEv~~~--~~~-----------~~~~~~~~lA~~~~Ll~t~ 320 (357)
|++|... ....+..++++|++.||+|=+ .|. .+-..+.++|++.||.+..
T Consensus 52 HY~R~~p~~W~d~L~k~Ka~GlNtV~tYV~Wn~HEp~~G~~dF~G~~DL~~Fl~la~e~GLyvil 116 (840)
T PLN03059 52 HYPRSTPEMWPDLIQKAKDGGLDVIQTYVFWNGHEPSPGNYYFEDRYDLVKFIKVVQAAGLYVHL 116 (840)
T ss_pred ccCcCCHHHHHHHHHHHHHcCCCeEEEEecccccCCCCCeeeccchHHHHHHHHHHHHcCCEEEe
Confidence 6666431 256788899999999998754 221 1225799999999999864
No 78
>PTZ00170 D-ribulose-5-phosphate 3-epimerase; Provisional
Probab=52.50 E-value=91 Score=28.96 Aligned_cols=62 Identities=11% Similarity=0.056 Sum_probs=37.0
Q ss_pred HHHHHHHHcC-CeEEeeCCCCCCChHHHHHHHHHcCCcEEEeecCCCcHHHHHHHHHHHhcCCc
Q 018376 255 VAVQLIHRTG-GLAVLAHPWALKNPAAIIRKLKDVGLHGLEVYRSDGKLVDVNFLEKIDNFLLL 317 (357)
Q Consensus 255 evI~~I~~aG-GvaVLAHP~~~~~~~~li~~l~~~GlDGIEv~~~~~~~~~~~~~~lA~~~~Ll 317 (357)
++|+.|++.+ .+.+-+|-. ..++...++.+.++|.|-|-+........-....+.++++|+.
T Consensus 54 ~~v~~lr~~~~~~~lDvHLm-~~~p~~~i~~~~~~Gad~itvH~ea~~~~~~~~l~~ik~~G~~ 116 (228)
T PTZ00170 54 PVVKSLRKHLPNTFLDCHLM-VSNPEKWVDDFAKAGASQFTFHIEATEDDPKAVARKIREAGMK 116 (228)
T ss_pred HHHHHHHhcCCCCCEEEEEC-CCCHHHHHHHHHHcCCCEEEEeccCCchHHHHHHHHHHHCCCe
Confidence 5677777766 666777754 2445666677777777777554433222122456666777754
No 79
>cd06556 ICL_KPHMT Members of the ICL/PEPM_KPHMT enzyme superfamily catalyze the formation and cleavage of either P-C or C-C bonds. Typical members are phosphoenolpyruvate mutase (PEPM), phosphonopyruvate hydrolase (PPH), carboxyPEP mutase (CPEP mutase), oxaloacetate hydrolase (OAH), isocitrate lyase (ICL), 2-methylisocitrate lyase (MICL), and ketopantoate hydroxymethyltransferase (KPHMT).
Probab=52.39 E-value=48 Score=31.31 Aligned_cols=71 Identities=10% Similarity=0.036 Sum_probs=47.7
Q ss_pred HHHHHHHHHHcCCeEEeeCCCCCC-----------------ChHHHHH---HHHHcCCcEEEeecCCCcHHHHHHHHHHH
Q 018376 253 AEVAVQLIHRTGGLAVLAHPWALK-----------------NPAAIIR---KLKDVGLHGLEVYRSDGKLVDVNFLEKID 312 (357)
Q Consensus 253 ~eevI~~I~~aGGvaVLAHP~~~~-----------------~~~~li~---~l~~~GlDGIEv~~~~~~~~~~~~~~lA~ 312 (357)
..+.|+.+.+++ ++|.||-+... ..++.|+ .+.++|-|+|-+-.. +.+. ..++++
T Consensus 114 ~~~~i~ai~~a~-i~ViaRtd~~pq~~~~~gg~~~~~~~~~~~~~ai~Ra~ay~~AGAd~i~~e~~--~~e~--~~~i~~ 188 (240)
T cd06556 114 HIETLQMLTAAA-VPVIAHTGLTPQSVNTSGGDEGQYRGDEAGEQLIADALAYAPAGADLIVMECV--PVEL--AKQITE 188 (240)
T ss_pred HHHHHHHHHHcC-CeEEEEeCCchhhhhccCCceeeccCHHHHHHHHHHHHHHHHcCCCEEEEcCC--CHHH--HHHHHH
Confidence 446788898887 99999976421 0134453 457889999988654 3343 778888
Q ss_pred hcCCceeecccccCCCC
Q 018376 313 NFLLLLCLRQISNCDCA 329 (357)
Q Consensus 313 ~~~Ll~t~~~~~GSD~h 329 (357)
+.+++..++. .|++|.
T Consensus 189 ~~~~P~~~~g-ag~~~d 204 (240)
T cd06556 189 ALAIPLAGIG-AGSGTD 204 (240)
T ss_pred hCCCCEEEEe-cCcCCC
Confidence 8887765422 367776
No 80
>TIGR03849 arch_ComA phosphosulfolactate synthase. This model finds the ComA (Coenzyme M biosynthesis A) protein, phosphosulfolactate synthase, in methanogenic archaea. The ComABC pathway is one of at least two pathways to the intermediate sulfopyruvate. Coenzyme M occurs rarely and sporadically outside of the archaea, as for expoxide metabolism in Xanthobacter autotrophicus Py2, but candidate phosphosulfolactate synthases from that and other species occur fall below the cutoff and outside the scope of this model. This model deliberately is narrower in scope than pfam02679.
Probab=51.73 E-value=45 Score=31.55 Aligned_cols=67 Identities=9% Similarity=0.158 Sum_probs=45.7
Q ss_pred HHHHHHHHHHcCCeEEeeCCCC-----CCChHHHHHHHHHcCCcEEEeecCCCc--HHH-HHHHHHHHhcCCcee
Q 018376 253 AEVAVQLIHRTGGLAVLAHPWA-----LKNPAAIIRKLKDVGLHGLEVYRSDGK--LVD-VNFLEKIDNFLLLLC 319 (357)
Q Consensus 253 ~eevI~~I~~aGGvaVLAHP~~-----~~~~~~li~~l~~~GlDGIEv~~~~~~--~~~-~~~~~lA~~~~Ll~t 319 (357)
+.|.|++.|++|=-+..-..+. ...-++.+++.++.|+|.||+....-. .+. .++.+.++++||.+-
T Consensus 43 l~eki~la~~~~V~v~~GGtl~E~~~~q~~~~~Yl~~~k~lGf~~IEiS~G~~~i~~~~~~rlI~~~~~~g~~v~ 117 (237)
T TIGR03849 43 VKEKIEMYKDYGIKVYPGGTLFEIAHSKGKFDEYLNECDELGFEAVEISDGSMEISLEERCNLIERAKDNGFMVL 117 (237)
T ss_pred HHHHHHHHHHcCCeEeCCccHHHHHHHhhhHHHHHHHHHHcCCCEEEEcCCccCCCHHHHHHHHHHHHhCCCeEe
Confidence 6788888888773333222110 012256777899999999999987543 333 478999999999863
No 81
>PTZ00124 adenosine deaminase; Provisional
Probab=51.11 E-value=14 Score=37.12 Aligned_cols=29 Identities=21% Similarity=0.140 Sum_probs=26.0
Q ss_pred eEEceeeeCcCCCCCCCHHHHHHHHHHcCCcE
Q 018376 73 VVFELHSHSNFSDGYLSPSKLVERAHCNGVKV 104 (357)
Q Consensus 73 ~~~DLH~HT~~SDG~~tp~elv~~A~~~Gl~~ 104 (357)
.+++||+|- ||+++|+.+.+.|+++|++.
T Consensus 36 PKvELH~HL---dGsi~~~tl~~La~~~~~~~ 64 (362)
T PTZ00124 36 PKCELHCHL---DLCFSVDFFLSCIRKYNLQP 64 (362)
T ss_pred CceeEeecc---cCCCCHHHHHHHHHHcCCCC
Confidence 489999997 78999999999999999754
No 82
>PRK13210 putative L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=50.63 E-value=45 Score=31.22 Aligned_cols=42 Identities=10% Similarity=0.063 Sum_probs=28.2
Q ss_pred HHHHHHHHHcCCcEEEeecCC-C--------cH-HHHHHHHHHHhcCCceee
Q 018376 279 AAIIRKLKDVGLHGLEVYRSD-G--------KL-VDVNFLEKIDNFLLLLCL 320 (357)
Q Consensus 279 ~~li~~l~~~GlDGIEv~~~~-~--------~~-~~~~~~~lA~~~~Ll~t~ 320 (357)
.+.++.++++|++|||+.-.. + +. +...+.++++++||-++.
T Consensus 19 ~e~~~~~~~~G~~~iEl~~~~~~~~~~~~~~~~~~~~~l~~~l~~~Gl~i~~ 70 (284)
T PRK13210 19 EERLVFAKELGFDFVEMSVDESDERLARLDWSKEERLSLVKAIYETGVRIPS 70 (284)
T ss_pred HHHHHHHHHcCCCeEEEecCCcccccccccCCHHHHHHHHHHHHHcCCCceE
Confidence 567777888888888885321 0 11 224578888888888764
No 83
>PRK06294 coproporphyrinogen III oxidase; Provisional
Probab=50.27 E-value=58 Score=32.50 Aligned_cols=77 Identities=13% Similarity=0.266 Sum_probs=49.8
Q ss_pred HhhCCCCcccCCCCCCHHHHHHHHHHc--CCeEEeeCCCCCCChHHHHHHHHHcCCcEEEe----ecC--------CCcH
Q 018376 237 YLYDGGPAYSTGSEPLAEVAVQLIHRT--GGLAVLAHPWALKNPAAIIRKLKDVGLHGLEV----YRS--------DGKL 302 (357)
Q Consensus 237 yl~~~~~~yv~~~~~~~eevI~~I~~a--GGvaVLAHP~~~~~~~~li~~l~~~GlDGIEv----~~~--------~~~~ 302 (357)
|++.|.|...+. ..++++++.|+.. ..+.+=++|.... .+.++.|+++|+.-|++ +++ .++.
T Consensus 63 y~GGGTPs~l~~--~~l~~ll~~i~~~~~~eit~E~~P~~~~--~~~l~~l~~~G~nrislGvQS~~~~~L~~l~R~~~~ 138 (370)
T PRK06294 63 FFGGGTPSLVPP--ALIQDILKTLEAPHATEITLEANPENLS--ESYIRALALTGINRISIGVQTFDDPLLKLLGRTHSS 138 (370)
T ss_pred EECCCccccCCH--HHHHHHHHHHHhCCCCeEEEEeCCCCCC--HHHHHHHHHCCCCEEEEccccCCHHHHHHcCCCCCH
Confidence 566666655542 2356778888654 3688899997643 56789999999986665 332 1112
Q ss_pred HH-HHHHHHHHhcCCc
Q 018376 303 VD-VNFLEKIDNFLLL 317 (357)
Q Consensus 303 ~~-~~~~~lA~~~~Ll 317 (357)
+. ....+.+++.|+.
T Consensus 139 ~~~~~ai~~~~~~g~~ 154 (370)
T PRK06294 139 SKAIDAVQECSEHGFS 154 (370)
T ss_pred HHHHHHHHHHHHcCCC
Confidence 22 3466788888875
No 84
>PF09692 Arb1: Argonaute siRNA chaperone (ARC) complex subunit Arb1; InterPro: IPR018606 Arb1 is required for histone H3 Lys9 (H3-K9) methylation, heterochromatin, assembly and siRNA generation in fission yeast [].
Probab=49.67 E-value=6.7 Score=39.82 Aligned_cols=21 Identities=19% Similarity=0.094 Sum_probs=10.6
Q ss_pred CcEEEeecCCCc--HHHHHHHHH
Q 018376 290 LHGLEVYRSDGK--LVDVNFLEK 310 (357)
Q Consensus 290 lDGIEv~~~~~~--~~~~~~~~l 310 (357)
++|+||..-.-+ ...+.+..+
T Consensus 276 ~~~~EV~~i~~P~~e~~~~y~~~ 298 (396)
T PF09692_consen 276 ICGFEVTSIHLPSEEVRQFYKSV 298 (396)
T ss_pred cceeEEEeeeCCCHHHHHHHHhc
Confidence 577777553322 222345555
No 85
>cd03309 CmuC_like CmuC_like. Proteins similar to the putative corrinoid methyltransferase CmuC. Its function has been inferred from sequence similarity to the methyltransferases CmuA and MtaA. Mutants of Methylobacterium sp. disrupted in cmuC and purU appear deficient in some step of chloromethane metabolism.
Probab=49.58 E-value=53 Score=32.28 Aligned_cols=47 Identities=11% Similarity=0.305 Sum_probs=37.4
Q ss_pred CCHHHHHHHHHHcCCeEEeeCCCCCCChHHHHHHHHHcCCcEEEeecCC
Q 018376 251 PLAEVAVQLIHRTGGLAVLAHPWALKNPAAIIRKLKDVGLHGLEVYRSD 299 (357)
Q Consensus 251 ~~~eevI~~I~~aGGvaVLAHP~~~~~~~~li~~l~~~GlDGIEv~~~~ 299 (357)
|...++++.|++.||.+++-|+.-. ...+++.+.++|+|++-+....
T Consensus 198 P~~krIi~~ik~~~g~piilH~cG~--~~~~l~~~~e~g~dvl~~d~~~ 244 (321)
T cd03309 198 PRMQRIFDFLRSNTSALIVHHSCGA--AASLVPSMAEMGVDSWNVVMTA 244 (321)
T ss_pred HHHHHHHHHHHhccCCceEEEeCCC--cHHHHHHHHHcCCCEEEecCCC
Confidence 4568999999999888888898642 2457889999999999886643
No 86
>COG0800 Eda 2-keto-3-deoxy-6-phosphogluconate aldolase [Carbohydrate transport and metabolism]
Probab=49.33 E-value=64 Score=30.01 Aligned_cols=60 Identities=8% Similarity=0.102 Sum_probs=43.6
Q ss_pred HHHHHHHHHcCCeEEeeCCCCCCChHHHHHHHHHcCCcEEEeecCCCcHHHHHHHHHHHhcC
Q 018376 254 EVAVQLIHRTGGLAVLAHPWALKNPAAIIRKLKDVGLHGLEVYRSDGKLVDVNFLEKIDNFL 315 (357)
Q Consensus 254 eevI~~I~~aGGvaVLAHP~~~~~~~~li~~l~~~GlDGIEv~~~~~~~~~~~~~~lA~~~~ 315 (357)
.++....++.+=|+|+.+.-. .....+...+.+-|++.||+-++.....+ .+..+++++.
T Consensus 4 ~~~~~~l~~~~vI~Vlr~~~~-e~a~~~a~Ali~gGi~~IEITl~sp~a~e-~I~~l~~~~p 63 (211)
T COG0800 4 MKILSKLKAQPVVPVIRGDDV-EEALPLAKALIEGGIPAIEITLRTPAALE-AIRALAKEFP 63 (211)
T ss_pred hHHHHHHHHCCeeEEEEeCCH-HHHHHHHHHHHHcCCCeEEEecCCCCHHH-HHHHHHHhCc
Confidence 457788888899999998631 22245777889999999999775432222 4788888888
No 87
>PF00962 A_deaminase: Adenosine/AMP deaminase immunodeficiency disease (SCID); InterPro: IPR001365 Adenosine deaminase (3.5.4.4 from EC) catalyzes the hydrolytic deamination of adenosine into inosine and AMP deaminase (3.5.4.6 from EC) catalyzes the hydrolytic deamination of AMP into IMP. It has been shown [] that these two enzymes share three regions of sequence similarities; these regions are centred on residues which are proposed to play an important role in the catalytic mechanism of these two enzymes.; GO: 0019239 deaminase activity, 0009168 purine ribonucleoside monophosphate biosynthetic process; PDB: 3LGG_B 3LGD_B 2AMX_B 3EWD_A 2QVN_A 2PGF_A 2PGR_A 3EWC_A 1W1I_G 1O5R_A ....
Probab=49.10 E-value=16 Score=35.42 Aligned_cols=28 Identities=43% Similarity=0.526 Sum_probs=24.2
Q ss_pred eEEceeeeCcCCCCCCCHHHHHHHHHHcCCc
Q 018376 73 VVFELHSHSNFSDGYLSPSKLVERAHCNGVK 103 (357)
Q Consensus 73 ~~~DLH~HT~~SDG~~tp~elv~~A~~~Gl~ 103 (357)
.++|||+|- +|+++++.+++.|++.++.
T Consensus 3 pK~eLH~HL---~Gsi~~~~l~ela~~~~~~ 30 (331)
T PF00962_consen 3 PKAELHIHL---DGSISPETLLELAKKNNIC 30 (331)
T ss_dssp -EEEEEEEG---GGSS-HHHHHHHHHHCTCC
T ss_pred CEEEeeeCC---ccCCCHHHHHHHHHhCCCC
Confidence 689999997 7889999999999999976
No 88
>TIGR00539 hemN_rel putative oxygen-independent coproporphyrinogen III oxidase. Experimentally determined examples of oxygen-independent coproporphyrinogen III oxidase, an enzyme that replaces HemF function under anaerobic conditions, belong to a family of proteins described by the model hemN. This model, hemN_rel, models a closely related protein, shorter at the amino end and lacking the region containing the motif PYRT[SC]YP found in members of the hemN family. Several species, including E. coli, Helicobacter pylori, Aquifex aeolicus, and Chlamydia trachomatis, have members of both this family and the E. coli hemN family. The member of this family from Bacillus subtilis was shown to complement an hemF/hemN double mutant of Salmonella typimurium and to prevent accumulation of coproporphyrinogen III under anaerobic conditions, but the exact role of this protein is still uncertain. It is found in a number of species that do not synthesize heme de novo.
Probab=47.65 E-value=70 Score=31.67 Aligned_cols=77 Identities=17% Similarity=0.195 Sum_probs=44.2
Q ss_pred HhhCCCCcccCCCCCCHHHHHHHHHHcC------CeEEeeCCCCCCChHHHHHHHHHcCCcEEEe----ecC--------
Q 018376 237 YLYDGGPAYSTGSEPLAEVAVQLIHRTG------GLAVLAHPWALKNPAAIIRKLKDVGLHGLEV----YRS-------- 298 (357)
Q Consensus 237 yl~~~~~~yv~~~~~~~eevI~~I~~aG------GvaVLAHP~~~~~~~~li~~l~~~GlDGIEv----~~~-------- 298 (357)
|++.|.|...+. ..++++++.|++.- -+.+-++|.... .+.+..|+++|++-|.+ +++
T Consensus 56 ~~GGGtPs~l~~--~~l~~ll~~i~~~~~~~~~~eitie~np~~lt--~e~l~~l~~~Gv~risiGvqS~~~~~l~~lgR 131 (360)
T TIGR00539 56 FIGGGTPNTLSV--EAFERLFESIYQHASLSDDCEITTEANPELIT--AEWCKGLKGAGINRLSLGVQSFRDDKLLFLGR 131 (360)
T ss_pred EeCCCchhcCCH--HHHHHHHHHHHHhCCCCCCCEEEEEeCCCCCC--HHHHHHHHHcCCCEEEEecccCChHHHHHhCC
Confidence 455554443321 23455676665421 367788887643 46788888888876655 332
Q ss_pred CCcHHH-HHHHHHHHhcCCc
Q 018376 299 DGKLVD-VNFLEKIDNFLLL 317 (357)
Q Consensus 299 ~~~~~~-~~~~~lA~~~~Ll 317 (357)
.++.+. ....+.+++.|+.
T Consensus 132 ~~~~~~~~~ai~~l~~~G~~ 151 (360)
T TIGR00539 132 QHSAKNIAPAIETALKSGIE 151 (360)
T ss_pred CCCHHHHHHHHHHHHHcCCC
Confidence 111222 3467788888874
No 89
>PF01301 Glyco_hydro_35: Glycosyl hydrolases family 35; InterPro: IPR001944 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 35 GH35 from CAZY comprises enzymes with only one known activity; beta-galactosidase (3.2.1.23 from EC). Mammalian beta-galactosidase is a lysosomal enzyme (gene GLB1) which cleaves the terminal galactose from gangliosides, glycoproteins, and glycosaminoglycans and whose deficiency is the cause of the genetic disease Gm(1) gangliosidosis (Morquio disease type B).; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3OGS_A 3OGV_A 3OGR_A 3OG2_A 1TG7_A 1XC6_A 3THC_C 3THD_D 3D3A_A 4E8D_B ....
Probab=47.17 E-value=27 Score=34.22 Aligned_cols=49 Identities=18% Similarity=0.164 Sum_probs=31.5
Q ss_pred CCCCCCC--hHHHHHHHHHcCCcEEEeecCC--Cc-----------HHHHHHHHHHHhcCCcee
Q 018376 271 HPWALKN--PAAIIRKLKDVGLHGLEVYRSD--GK-----------LVDVNFLEKIDNFLLLLC 319 (357)
Q Consensus 271 HP~~~~~--~~~li~~l~~~GlDGIEv~~~~--~~-----------~~~~~~~~lA~~~~Ll~t 319 (357)
|++|... ....+..++++|+..|++|=+- |. .+-..+.++|++.||.+.
T Consensus 17 hy~r~p~~~W~~~l~k~ka~G~n~v~~yv~W~~he~~~g~~df~g~~dl~~f~~~a~~~gl~vi 80 (319)
T PF01301_consen 17 HYFRIPPEYWRDRLQKMKAAGLNTVSTYVPWNLHEPEEGQFDFTGNRDLDRFLDLAQENGLYVI 80 (319)
T ss_dssp -GGGS-GGGHHHHHHHHHHTT-SEEEEE--HHHHSSBTTB---SGGG-HHHHHHHHHHTT-EEE
T ss_pred ccccCChhHHHHHHHHHHhCCcceEEEeccccccCCCCCcccccchhhHHHHHHHHHHcCcEEE
Confidence 7766542 2668888999999999998641 11 122479999999999976
No 90
>PTZ00170 D-ribulose-5-phosphate 3-epimerase; Provisional
Probab=46.96 E-value=79 Score=29.35 Aligned_cols=57 Identities=23% Similarity=0.289 Sum_probs=41.9
Q ss_pred ceEEceeeeCcCCCCCCCHHHHHHHHHHcCCcEEEEecCCCCCC--HHHHHHHHHhcCCeEEEEEEEEe
Q 018376 72 NVVFELHSHSNFSDGYLSPSKLVERAHCNGVKVLALTDHDTMSG--IPEAIETARRFGMKIIPGVEIST 138 (357)
Q Consensus 72 ~~~~DLH~HT~~SDG~~tp~elv~~A~~~Gl~~iaITDHdt~~g--~~~~~~~a~~~gi~vi~GiEis~ 138 (357)
...+|+|.|+ .+|+..++.+.+.|.+.+.+ |-.... ..++.+.+++.|+ ..|+.+..
T Consensus 65 ~~~lDvHLm~------~~p~~~i~~~~~~Gad~itv--H~ea~~~~~~~~l~~ik~~G~--~~gval~p 123 (228)
T PTZ00170 65 NTFLDCHLMV------SNPEKWVDDFAKAGASQFTF--HIEATEDDPKAVARKIREAGM--KVGVAIKP 123 (228)
T ss_pred CCCEEEEECC------CCHHHHHHHHHHcCCCEEEE--eccCCchHHHHHHHHHHHCCC--eEEEEECC
Confidence 5678999994 58999999999999998877 533222 4567777777875 45766654
No 91
>cd05017 SIS_PGI_PMI_1 The members of this protein family contain the SIS (Sugar ISomerase) domain and have both the phosphoglucose isomerase (PGI) and the phosphomannose isomerase (PMI) functions. These functions catalyze the reversible reactions of glucose 6-phosphate to fructose 6-phosphate, and mannose 6-phosphate to fructose 6-phosphate, respectively at an equal rate. This protein contains two SIS domains. This alignment is based on the first SIS domain.
Probab=45.96 E-value=49 Score=27.08 Aligned_cols=39 Identities=31% Similarity=0.425 Sum_probs=28.1
Q ss_pred CCCHHHHHHHHHHcCCcEEEEecCCCCCCHHHHHHHHHhcCCeEE
Q 018376 87 YLSPSKLVERAHCNGVKVLALTDHDTMSGIPEAIETARRFGMKII 131 (357)
Q Consensus 87 ~~tp~elv~~A~~~Gl~~iaITDHdt~~g~~~~~~~a~~~gi~vi 131 (357)
+...-+.++.|+++|.+.++||+- + ++.+++.+.++.++
T Consensus 56 t~e~i~~~~~a~~~g~~iI~IT~~-~-----~l~~~~~~~~~~~~ 94 (119)
T cd05017 56 TEETLSAVEQAKERGAKIVAITSG-G-----KLLEMAREHGVPVI 94 (119)
T ss_pred CHHHHHHHHHHHHCCCEEEEEeCC-c-----hHHHHHHHcCCcEE
Confidence 445677899999999999999963 2 35566666555443
No 92
>TIGR02631 xylA_Arthro xylose isomerase, Arthrobacter type. This model describes a D-xylose isomerase that is also active as a D-glucose isomerase. It is tetrameric and dependent on a divalent cation Mg2+, Co2+ or Mn2+ as characterized in Arthrobacter. Members of this family differ substantially from the D-xylose isomerases of family TIGR02630.
Probab=45.30 E-value=40 Score=34.05 Aligned_cols=43 Identities=21% Similarity=0.275 Sum_probs=31.3
Q ss_pred hHHHHHHHHHcCCcEEEeec----CCCcHH------HHHHHHHHHhcCCceee
Q 018376 278 PAAIIRKLKDVGLHGLEVYR----SDGKLV------DVNFLEKIDNFLLLLCL 320 (357)
Q Consensus 278 ~~~li~~l~~~GlDGIEv~~----~~~~~~------~~~~~~lA~~~~Ll~t~ 320 (357)
+.+.+..++++|+||||++. |..... ...+.+.++++||-++.
T Consensus 34 ~~e~i~~la~~GfdgVE~~~~dl~P~~~~~~e~~~~~~~lk~~L~~~GL~v~~ 86 (382)
T TIGR02631 34 PVEAVHKLAELGAYGVTFHDDDLIPFGAPPQERDQIVRRFKKALDETGLKVPM 86 (382)
T ss_pred HHHHHHHHHHhCCCEEEecccccCCCCCChhHHHHHHHHHHHHHHHhCCeEEE
Confidence 45678889999999999983 333211 13688999999998664
No 93
>cd02072 Glm_B12_BD B12 binding domain of glutamate mutase (Glm). Glutamate mutase catalysis the conversion of (S)-glutamate with (2S,3S)-3-methylaspartate. The rearrangement reaction is initiated by the extraction of a hydrogen from the protein-bound substrate by a 5'-desoxyadenosyl radical, which is generated by the homolytic cleavage of the organometallic bond of the cofactor B12. Glm is a heterotetrameric molecule consisting of two alpha and two epsilon polypeptide chains.
Probab=45.09 E-value=78 Score=27.01 Aligned_cols=41 Identities=7% Similarity=0.078 Sum_probs=32.2
Q ss_pred CCHHHHHHHHHHcCCcEEEEecCCCCC--CHHHHHHHHHhcCC
Q 018376 88 LSPSKLVERAHCNGVKVLALTDHDTMS--GIPEAIETARRFGM 128 (357)
Q Consensus 88 ~tp~elv~~A~~~Gl~~iaITDHdt~~--g~~~~~~~a~~~gi 128 (357)
.+|+++++.|++.+.+.++++-..+.. ...+..+..++.|+
T Consensus 37 v~~e~~v~aa~~~~adiVglS~L~t~~~~~~~~~~~~l~~~gl 79 (128)
T cd02072 37 SPQEEFIDAAIETDADAILVSSLYGHGEIDCKGLREKCDEAGL 79 (128)
T ss_pred CCHHHHHHHHHHcCCCEEEEeccccCCHHHHHHHHHHHHHCCC
Confidence 689999999999999999999876544 35566666666554
No 94
>TIGR02810 agaZ_gatZ D-tagatose-bisphosphate aldolase, class II, non-catalytic subunit. Aldolases specific for D-tagatose-bisphosphate occur in distinct pathways in Escherichia coli and other bacteria, one for the degradation of galactitol (formerly dulcitol) and one for degradation of N-acetyl-galactosamine and D-galactosamine. This family represents a protein of both systems that behaves as a non-catalytic subunit of D-tagatose-bisphosphate aldolase, required both for full activity and for good stability of the aldolase. Note that members of this protein family appear in public databases annotated as putative tagatose 6-phosphate kinases, possibly in error.
Probab=43.77 E-value=3.8e+02 Score=27.56 Aligned_cols=48 Identities=29% Similarity=0.247 Sum_probs=39.1
Q ss_pred CHHHHHHHHHHcCCeEEeeCCCCCCChHHHHHHHHHcCCcEEEeecCCC
Q 018376 252 LAEVAVQLIHRTGGLAVLAHPWALKNPAAIIRKLKDVGLHGLEVYRSDG 300 (357)
Q Consensus 252 ~~eevI~~I~~aGGvaVLAHP~~~~~~~~li~~l~~~GlDGIEv~~~~~ 300 (357)
.+.+..+.|+..+.+++=||-..|..+ ..+.++...|+-.+-|=....
T Consensus 239 ~A~~Ls~~~~~~~~lvfEaHSTDYQt~-~al~~lv~dgfaiLKVGPalT 286 (420)
T TIGR02810 239 RAQALSQVIDNTPGLVFEAHSTDYQTP-AALRALVRDHFAILKVGPALT 286 (420)
T ss_pred HHHHHHHHHHhCCCceeecCCccCCCH-HHHHHHHhcCceeeeechhHh
Confidence 467899999999999999998877654 457778899998888876544
No 95
>PRK05628 coproporphyrinogen III oxidase; Validated
Probab=43.55 E-value=74 Score=31.62 Aligned_cols=77 Identities=13% Similarity=0.105 Sum_probs=45.9
Q ss_pred HhhCCCCcccCCCCCCHHHHHHHHHHcCC------eEEeeCCCCCCChHHHHHHHHHcCCcEEEeec-CCC---------
Q 018376 237 YLYDGGPAYSTGSEPLAEVAVQLIHRTGG------LAVLAHPWALKNPAAIIRKLKDVGLHGLEVYR-SDG--------- 300 (357)
Q Consensus 237 yl~~~~~~yv~~~~~~~eevI~~I~~aGG------vaVLAHP~~~~~~~~li~~l~~~GlDGIEv~~-~~~--------- 300 (357)
|++.|.|...+. ..++++++.|++.-+ +.+-++|.... ++.++.|+++|+.-|.+=- +.+
T Consensus 64 ~~GGGTPs~l~~--~~l~~ll~~i~~~~~~~~~~e~t~e~~p~~i~--~e~l~~l~~~G~~rvslGvQS~~~~~L~~l~R 139 (375)
T PRK05628 64 FVGGGTPSLLGA--EGLARVLDAVRDTFGLAPGAEVTTEANPESTS--PEFFAALRAAGFTRVSLGMQSAAPHVLAVLDR 139 (375)
T ss_pred EeCCCccccCCH--HHHHHHHHHHHHhCCCCCCCEEEEEeCCCCCC--HHHHHHHHHcCCCEEEEecccCCHHHHHHcCC
Confidence 455555544432 245677777877543 35567886543 5678888899988666522 211
Q ss_pred --cHHH-HHHHHHHHhcCCc
Q 018376 301 --KLVD-VNFLEKIDNFLLL 317 (357)
Q Consensus 301 --~~~~-~~~~~lA~~~~Ll 317 (357)
+.+. ....+.+++.|+.
T Consensus 140 ~~s~~~~~~a~~~l~~~g~~ 159 (375)
T PRK05628 140 THTPGRAVAAAREARAAGFE 159 (375)
T ss_pred CCCHHHHHHHHHHHHHcCCC
Confidence 1222 3466778888876
No 96
>PTZ00372 endonuclease 4-like protein; Provisional
Probab=42.51 E-value=45 Score=34.15 Aligned_cols=52 Identities=15% Similarity=0.109 Sum_probs=37.0
Q ss_pred EceeeeCcCCCCCCCHHHHHHHHHHcCCcEEEEecCCCCCC---------HHHHHHHHHhcCCe
Q 018376 75 FELHSHSNFSDGYLSPSKLVERAHCNGVKVLALTDHDTMSG---------IPEAIETARRFGMK 129 (357)
Q Consensus 75 ~DLH~HT~~SDG~~tp~elv~~A~~~Gl~~iaITDHdt~~g---------~~~~~~~a~~~gi~ 129 (357)
+-+-+|...+.| +...+++|.+.|..++.|==++.-.. +.++.+.+++.|+.
T Consensus 131 ~~iGaHvSiaGG---~~~a~~~a~~~g~~afqiF~~npr~w~~~~~~~~~~~~f~~~~~~~gi~ 191 (413)
T PTZ00372 131 VYIGAHVSASGG---VDNSPINAYNIAGQAFALFLKNQRTWNSPPLSDETIDKFKENCKKYNYD 191 (413)
T ss_pred ceEEEEEecccc---HHHHHHHHHHcCCCEEEEEcCCCccCCCCCCCHHHHHHHHHHHHHcCCC
Confidence 345555555554 55689999999999999987775432 35577778888765
No 97
>TIGR00542 hxl6Piso_put hexulose-6-phosphate isomerase, putative. This family is conserved at better than 40 % identity among the four known examples from three species: Escherichia coli (SgbU and SgaU), Haemophilus influenzae, and Mycoplasma pneumoniae. The rarity of the family, high level of conservation, and proposed catabolic role suggests lateral transfer may be a part of the evolutionary history of this protein.
Probab=42.22 E-value=58 Score=30.70 Aligned_cols=43 Identities=9% Similarity=0.014 Sum_probs=30.3
Q ss_pred HHHHHHHHHcCCcEEEeecCCC---------cH-HHHHHHHHHHhcCCceeec
Q 018376 279 AAIIRKLKDVGLHGLEVYRSDG---------KL-VDVNFLEKIDNFLLLLCLR 321 (357)
Q Consensus 279 ~~li~~l~~~GlDGIEv~~~~~---------~~-~~~~~~~lA~~~~Ll~t~~ 321 (357)
.+.++.+++.|+||||+.-+.. +. +...+.+.++++||-++.+
T Consensus 19 ~e~l~~~~~~G~~~VEl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~i~~~ 71 (279)
T TIGR00542 19 LERLQLAKTCGFDFVEMSVDETDDRLSRLDWSREQRLALVNAIIETGVRIPSM 71 (279)
T ss_pred HHHHHHHHHcCCCEEEEecCCccchhhccCCCHHHHHHHHHHHHHcCCCceee
Confidence 5677788899999999974331 11 1245788899999988753
No 98
>PRK09875 putative hydrolase; Provisional
Probab=41.94 E-value=1.2e+02 Score=29.36 Aligned_cols=75 Identities=12% Similarity=0.194 Sum_probs=49.5
Q ss_pred CCCCCCCHHHHhHHHHHhhhhccCCCCCCCCCCCccccccccccCCCCceEEceeeeCcCCCCCCCHHHHHHHHHHcCC-
Q 018376 24 GGKKKMTAEQSLAFNSVTEWVYLDQSHSSSSSEDDFGVHQILNRAVDNNVVFELHSHSNFSDGYLSPSKLVERAHCNGV- 102 (357)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~DLH~HT~~SDG~~tp~elv~~A~~~Gl- 102 (357)
-.+.++|+.+...|+.+.+-.....|| +++||.. |+..++ +++.+.+.|+
T Consensus 128 ~~~~~it~~E~kvl~Aaa~a~~~TG~p--------------------------i~~Ht~~--~~~g~e-~l~il~e~Gvd 178 (292)
T PRK09875 128 SSEGKITPLEEKVFIAAALAHNQTGRP--------------------------ISTHTSF--STMGLE-QLALLQAHGVD 178 (292)
T ss_pred cCCCCCCHHHHHHHHHHHHHHHHHCCc--------------------------EEEcCCC--ccchHH-HHHHHHHcCcC
Confidence 344457777777777777666666666 6778766 444444 5888999999
Q ss_pred -cEEEEecCCCCCCHHHHHHHHHhcCC
Q 018376 103 -KVLALTDHDTMSGIPEAIETARRFGM 128 (357)
Q Consensus 103 -~~iaITDHdt~~g~~~~~~~a~~~gi 128 (357)
+.+.|+=-|.........+.++ .|.
T Consensus 179 ~~rvvi~H~d~~~d~~~~~~l~~-~G~ 204 (292)
T PRK09875 179 LSRVTVGHCDLKDNLDNILKMID-LGA 204 (292)
T ss_pred cceEEEeCCCCCCCHHHHHHHHH-cCC
Confidence 7777766665555555555553 443
No 99
>PRK10027 cryptic adenine deaminase; Provisional
Probab=41.82 E-value=41 Score=36.05 Aligned_cols=62 Identities=15% Similarity=0.130 Sum_probs=42.9
Q ss_pred eEEceeeeCcCCCCCCCHHHHHHHHHHcCCcEEEEecCCC--CC---CHHHHHHHHHhcCCeEEEEEEE
Q 018376 73 VVFELHSHSNFSDGYLSPSKLVERAHCNGVKVLALTDHDT--MS---GIPEAIETARRFGMKIIPGVEI 136 (357)
Q Consensus 73 ~~~DLH~HT~~SDG~~tp~elv~~A~~~Gl~~iaITDHdt--~~---g~~~~~~~a~~~gi~vi~GiEi 136 (357)
-++|.|+|...|- ++|+++...|...|+..+..--|.. +. |+..+.+.++..++.+.+.+-.
T Consensus 85 GlIDaHvHiess~--~~p~~~a~aal~~G~TtVv~dPhei~nv~g~~gi~~~l~~a~~~p~~~~~~~ps 151 (588)
T PRK10027 85 GFIDAHLHIESSM--MTPVTFETATLPRGLTTVICDPHEIVNVMGEAGFAWFARCAEQARQNQYLQVSS 151 (588)
T ss_pred CeEeccccCCccc--CCHhHHHHHHHhCceEEEEcCCCCcccCCCHHHHHHHHHHhhhCCCeeEEeecc
Confidence 4899999976552 5899999999999999887744432 22 4555566666666655555443
No 100
>PRK08508 biotin synthase; Provisional
Probab=41.74 E-value=1.2e+02 Score=28.95 Aligned_cols=66 Identities=17% Similarity=0.197 Sum_probs=41.2
Q ss_pred HHHHHHHHHHcC-CeEEeeCCCCCCChHHHHHHHHHcCCcEEEe----e---cCC----CcHHH-HHHHHHHHhcCCcee
Q 018376 253 AEVAVQLIHRTG-GLAVLAHPWALKNPAAIIRKLKDVGLHGLEV----Y---RSD----GKLVD-VNFLEKIDNFLLLLC 319 (357)
Q Consensus 253 ~eevI~~I~~aG-GvaVLAHP~~~~~~~~li~~l~~~GlDGIEv----~---~~~----~~~~~-~~~~~lA~~~~Ll~t 319 (357)
+.++++.|++.+ ++.+.+=.+.. ..+.+.+|+++|+|.+-. - ++. ++.+. ....+.|++.|+-++
T Consensus 77 ~~ei~~~ik~~~p~l~i~~s~G~~--~~e~l~~Lk~aGld~~~~~lEt~~~~~~~i~~~~~~~~~l~~i~~a~~~Gi~v~ 154 (279)
T PRK08508 77 VAEAAKAVKKEVPGLHLIACNGTA--SVEQLKELKKAGIFSYNHNLETSKEFFPKICTTHTWEERFQTCENAKEAGLGLC 154 (279)
T ss_pred HHHHHHHHHhhCCCcEEEecCCCC--CHHHHHHHHHcCCCEEcccccchHHHhcCCCCCCCHHHHHHHHHHHHHcCCeec
Confidence 357788888886 77766644432 256788899999876653 1 111 11122 235667899998765
Q ss_pred e
Q 018376 320 L 320 (357)
Q Consensus 320 ~ 320 (357)
.
T Consensus 155 s 155 (279)
T PRK08508 155 S 155 (279)
T ss_pred c
Confidence 4
No 101
>COG0613 Predicted metal-dependent phosphoesterases (PHP family) [General function prediction only]
Probab=41.31 E-value=16 Score=34.86 Aligned_cols=68 Identities=13% Similarity=0.139 Sum_probs=44.1
Q ss_pred CCCHHHHHHHHHHcCCeEEeeCCCCCCC---hHHHHHHHHHcCCcEEEeecCCCcHHH--HHHHHHHHhcCCce
Q 018376 250 EPLAEVAVQLIHRTGGLAVLAHPWALKN---PAAIIRKLKDVGLHGLEVYRSDGKLVD--VNFLEKIDNFLLLL 318 (357)
Q Consensus 250 ~~~~eevI~~I~~aGGvaVLAHP~~~~~---~~~li~~l~~~GlDGIEv~~~~~~~~~--~~~~~lA~~~~Ll~ 318 (357)
....++.++.|+..++.+.+.||+.... +...+.+ .-.-.+.||++|+++.... .++.+++..|+.-.
T Consensus 97 ~~~~~~~~~~i~~~~~~~~~~h~~~~~~~~~~~~~~~~-~h~~~~~ve~~~~~~~~~~fn~~~~~~~~~~~~~~ 169 (258)
T COG0613 97 QLYREERLEEIKERLGKAIIPHPFEGARKLAGLGAITR-AHIARDAVEVGNASTRQGVFNKYLKRGAPKYVPPE 169 (258)
T ss_pred cccHHHHHHHHHHhCCccccCcchHHHHhcCCcccchh-hhhhhhhhccccccchHHHHHHHHhccCcccCccc
Confidence 3567899999999999999999984211 1101111 1223589999998875432 35666677666554
No 102
>smart00812 Alpha_L_fucos Alpha-L-fucosidase. O-Glycosyl hydrolases (EC 3.2.1.-) are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site PUBMED:. Because the fold of proteins is better conserved than their sequences, some of the families can be grouped in 'clans'. Family 29 encompasses alpha-L-fucosidases, which is a lysosomal enzyme responsible for hydrolyzing the alpha-1,6-linked fucose joined to the reducing-end N-acetylglucosamine of the carbohydrate moieties of glycoproteins. Deficiency of alpha-L-fucosidase results in the lysosomal storage disease fucosidosis.
Probab=40.84 E-value=64 Score=32.60 Aligned_cols=51 Identities=25% Similarity=0.371 Sum_probs=37.8
Q ss_pred CCCCHHHHHHHHHHcCCcEEEEec--CCC-------------CC------CHHHHHHHHHhcCCeEEEEEEEEe
Q 018376 86 GYLSPSKLVERAHCNGVKVLALTD--HDT-------------MS------GIPEAIETARRFGMKIIPGVEIST 138 (357)
Q Consensus 86 G~~tp~elv~~A~~~Gl~~iaITD--Hdt-------------~~------g~~~~~~~a~~~gi~vi~GiEis~ 138 (357)
-.+.|++.++.|++.|++.+.+|= ||. +. =+.++.++|++.||++ |+-.|.
T Consensus 79 ~~fD~~~Wa~~~k~AGakY~vlTaKHHDGF~lw~S~~t~~n~~~~~pkrDiv~el~~A~rk~Glk~--G~Y~S~ 150 (384)
T smart00812 79 EKFDPEEWADLFKKAGAKYVVLTAKHHDGFCLWDSKYSNWNAVDTGPKRDLVGELADAVRKRGLKF--GLYHSL 150 (384)
T ss_pred hhCCHHHHHHHHHHcCCCeEEeeeeecCCccccCCCCCCCcccCCCCCcchHHHHHHHHHHcCCeE--EEEcCH
Confidence 358999999999999999998863 222 21 1567888899988764 555554
No 103
>PRK15108 biotin synthase; Provisional
Probab=40.16 E-value=1.5e+02 Score=29.34 Aligned_cols=65 Identities=20% Similarity=0.237 Sum_probs=42.9
Q ss_pred HHHHHHHHHHcCCeEEeeCCCCCCChHHHHHHHHHcCCcEEEee-------cC----CCcHHH-HHHHHHHHhcCCceee
Q 018376 253 AEVAVQLIHRTGGLAVLAHPWALKNPAAIIRKLKDVGLHGLEVY-------RS----DGKLVD-VNFLEKIDNFLLLLCL 320 (357)
Q Consensus 253 ~eevI~~I~~aGGvaVLAHP~~~~~~~~li~~l~~~GlDGIEv~-------~~----~~~~~~-~~~~~lA~~~~Ll~t~ 320 (357)
+.++++.|++. |+.+.++.+.. ..+.+.+|+++|+|++=+. ++ .++-+. -...+.|.+.|+..+.
T Consensus 113 i~~~i~~ik~~-~i~v~~s~G~l--s~e~l~~LkeAGld~~n~~leT~p~~f~~I~~~~~~~~rl~~i~~a~~~G~~v~s 189 (345)
T PRK15108 113 LEQMVQGVKAM-GLETCMTLGTL--SESQAQRLANAGLDYYNHNLDTSPEFYGNIITTRTYQERLDTLEKVRDAGIKVCS 189 (345)
T ss_pred HHHHHHHHHhC-CCEEEEeCCcC--CHHHHHHHHHcCCCEEeeccccChHhcCCCCCCCCHHHHHHHHHHHHHcCCceee
Confidence 46788888865 56777777643 2678999999999955441 11 112222 2567888999987663
No 104
>PRK07094 biotin synthase; Provisional
Probab=39.98 E-value=1.2e+02 Score=29.40 Aligned_cols=72 Identities=8% Similarity=0.022 Sum_probs=45.1
Q ss_pred CHHHHHHHHHHcCCeEEeeCCCCCCChHHHHHHHHHcCCcEE----EeecC--------CCcHHH-HHHHHHHHhcCCce
Q 018376 252 LAEVAVQLIHRTGGLAVLAHPWALKNPAAIIRKLKDVGLHGL----EVYRS--------DGKLVD-VNFLEKIDNFLLLL 318 (357)
Q Consensus 252 ~~eevI~~I~~aGGvaVLAHP~~~~~~~~li~~l~~~GlDGI----Ev~~~--------~~~~~~-~~~~~lA~~~~Ll~ 318 (357)
.+.++++.|++..|+.+-.+++.. ..+.+..|+++|++.+ |..++ .++.+. ....+.+++.|+.+
T Consensus 104 ~l~~l~~~i~~~~~l~i~~~~g~~--~~e~l~~Lk~aG~~~v~~glEs~~~~~~~~i~~~~s~~~~~~~i~~l~~~Gi~v 181 (323)
T PRK07094 104 KIADIIKEIKKELDVAITLSLGER--SYEEYKAWKEAGADRYLLRHETADKELYAKLHPGMSFENRIACLKDLKELGYEV 181 (323)
T ss_pred HHHHHHHHHHccCCceEEEecCCC--CHHHHHHHHHcCCCEEEeccccCCHHHHHHhCCCCCHHHHHHHHHHHHHcCCee
Confidence 356788888876677776666532 3567888999998855 44331 122222 35678888999865
Q ss_pred eeccccc
Q 018376 319 CLRQISN 325 (357)
Q Consensus 319 t~~~~~G 325 (357)
+...+.|
T Consensus 182 ~~~~iiG 188 (323)
T PRK07094 182 GSGFMVG 188 (323)
T ss_pred cceEEEE
Confidence 4323334
No 105
>TIGR02336 1,3-beta-galactosyl-N-acetylhexosamine phosphorylase. Members of this family are found in phylogenetically diverse bacteria, including Clostridium perfringens (in the Firmicutes), Bifidobacterium longum and Propionibacterium acnes (in the Actinobacteria), and Vibrio vulnificus (in the Proteobacteria), most of which occur as mammalian pathogens or commensals. The nominal activity, 1,3-beta-galactosyl-N-acetylhexosamine phosphorylase (EC 2.4.1.211), varies somewhat from instance to instance in relative rates for closely related substrates.
Probab=39.70 E-value=81 Score=34.31 Aligned_cols=41 Identities=22% Similarity=0.368 Sum_probs=27.5
Q ss_pred CHHHHHHHHHHcCCeEE--eeCCCCCCChHHHHHHHHHcCCcEEE
Q 018376 252 LAEVAVQLIHRTGGLAV--LAHPWALKNPAAIIRKLKDVGLHGLE 294 (357)
Q Consensus 252 ~~eevI~~I~~aGGvaV--LAHP~~~~~~~~li~~l~~~GlDGIE 294 (357)
.+.+.|+++|++|=-|. |---|--. ++..+.++..||||+=
T Consensus 291 ~ak~lvd~~H~~GkeAmmFlgD~WIGt--EPy~~~F~~iGlDavv 333 (719)
T TIGR02336 291 NAKELVDMSHAAGKEAMMFLGDQWIGT--EPYKDGFDEIGLDAVV 333 (719)
T ss_pred HHHHHHHHHHhcCceEEEeccCceecc--ccchhhhhhcCcceEe
Confidence 36899999999996654 43322111 3456778888998874
No 106
>TIGR01430 aden_deam adenosine deaminase. This family includes the experimentally verified adenosine deaminases of mammals and E. coli. Other members of this family are predicted also to be adenosine deaminase, an enzyme of nucleotide degradation. This family is distantly related to AMP deaminase.
Probab=39.67 E-value=28 Score=33.80 Aligned_cols=30 Identities=37% Similarity=0.533 Sum_probs=26.3
Q ss_pred eEEceeeeCcCCCCCCCHHHHHHHHHHcCCcEE
Q 018376 73 VVFELHSHSNFSDGYLSPSKLVERAHCNGVKVL 105 (357)
Q Consensus 73 ~~~DLH~HT~~SDG~~tp~elv~~A~~~Gl~~i 105 (357)
.+++||+|- ||+++++.+.+.+++.|++..
T Consensus 2 pK~eLH~Hl---~Gsi~~~~l~~l~~~~~~~~~ 31 (324)
T TIGR01430 2 PKAELHLHL---EGSIRPETLLELAQKNGIPLP 31 (324)
T ss_pred CceeeEecc---cCCCCHHHHHHHHHHcCCCCC
Confidence 479999997 788999999999999998753
No 107
>PF01120 Alpha_L_fucos: Alpha-L-fucosidase; InterPro: IPR000933 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Family 29 (GH29 from CAZY) encompasses alpha-L-fucosidases (3.2.1.51 from EC) [], which is a lysosomal enzyme responsible for hydrolyzing the alpha-1,6-linked fucose joined to the reducing-end N-acetylglucosamine of the carbohydrate moieties of glycoproteins. Alpha-L-fucosidase is responsible for hydrolysing the alpha-1,6-linked fucose joined to the reducing-end N-acetylglucosamine of the carbohydrate moieties of glycoproteins. Fucosylated glycoconjugates are involved in numerous biological events, making alpha-l-fucosidases, the enzymes responsible for their processing, critically important. Deficiency in alpha-l-fucosidase activity is associated with fucosidosis, a lysosomal storage disorder characterised by rapid neurodegeneration, resulting in severe mental and motor deterioration []. The enzyme is a hexamer and displays a two-domain fold, composed of a catalytic (beta/alpha)(8)-like domain and a C-terminal beta-sandwich domain []. Drosophila melanogaster spermatozoa contains an alpha-l-fucosidase that might be involved in fertilisation by interacting with alpha-l-fucose residues on the micropyle of the eggshell []. In human sperm, membrane-associated alpha-l-fucosidase is stable for extended periods of time, which is made possible by membrane domains and compartmentalisation. These help preserve protein integrity []. ; GO: 0004560 alpha-L-fucosidase activity, 0005975 carbohydrate metabolic process; PDB: 3EYP_B 2ZX6_A 2ZWY_B 2ZX8_B 2WSP_A 2ZXA_A 2ZWZ_B 1ODU_B 1HL9_A 2ZX5_B ....
Probab=39.34 E-value=48 Score=32.82 Aligned_cols=54 Identities=24% Similarity=0.428 Sum_probs=33.9
Q ss_pred CCCCCCCHHHHHHHHHHcCCcEEEEe-cCC--------------CCC------CHHHHHHHHHhcCCeEEEEEEEEe
Q 018376 83 FSDGYLSPSKLVERAHCNGVKVLALT-DHD--------------TMS------GIPEAIETARRFGMKIIPGVEIST 138 (357)
Q Consensus 83 ~SDG~~tp~elv~~A~~~Gl~~iaIT-DHd--------------t~~------g~~~~~~~a~~~gi~vi~GiEis~ 138 (357)
|.-..+.|++.++.|++.|.+.+.+| -|+ ++. =+.++.++|++.||++ |+=+|.
T Consensus 86 F~p~~fD~dqW~~~ak~aGakY~VlTakHHDGF~LW~S~~t~~~v~~~~~krDiv~El~~A~rk~Glk~--G~Y~S~ 160 (346)
T PF01120_consen 86 FNPTKFDADQWAKLAKDAGAKYVVLTAKHHDGFCLWPSKYTDYNVVNSGPKRDIVGELADACRKYGLKF--GLYYSP 160 (346)
T ss_dssp ---TT--HHHHHHHHHHTT-SEEEEEEE-TT--BSS--TT-SSBGGGGGGTS-HHHHHHHHHHHTT-EE--EEEEES
T ss_pred CCcccCCHHHHHHHHHHcCCCEEEeehhhcCccccCCCCCCcccccCCCCCCCHHHHHHHHHHHcCCeE--EEEecc
Confidence 44557999999999999999999886 232 211 1567888999998764 554443
No 108
>PRK09057 coproporphyrinogen III oxidase; Provisional
Probab=39.17 E-value=1.1e+02 Score=30.67 Aligned_cols=55 Identities=16% Similarity=0.328 Sum_probs=37.4
Q ss_pred HhhCCCCcccCCCCCCHHHHHHHHHHc----C--CeEEeeCCCCCCChHHHHHHHHHcCCcEEEe
Q 018376 237 YLYDGGPAYSTGSEPLAEVAVQLIHRT----G--GLAVLAHPWALKNPAAIIRKLKDVGLHGLEV 295 (357)
Q Consensus 237 yl~~~~~~yv~~~~~~~eevI~~I~~a----G--GvaVLAHP~~~~~~~~li~~l~~~GlDGIEv 295 (357)
|++.|.|...+.. .++++++.|++. . -+.+=|+|.... .+.+..|+++|+.-|++
T Consensus 60 y~GGGTPs~l~~~--~L~~ll~~i~~~f~~~~~~eit~E~~P~~i~--~e~L~~l~~~Gvnrisl 120 (380)
T PRK09057 60 FFGGGTPSLMQPE--TVAALLDAIARLWPVADDIEITLEANPTSVE--AGRFRGYRAAGVNRVSL 120 (380)
T ss_pred EeCCCccccCCHH--HHHHHHHHHHHhCCCCCCccEEEEECcCcCC--HHHHHHHHHcCCCEEEE
Confidence 5666666555422 356778888762 2 478899997644 46788999999975544
No 109
>PRK14042 pyruvate carboxylase subunit B; Provisional
Probab=39.11 E-value=1.2e+02 Score=32.65 Aligned_cols=49 Identities=20% Similarity=0.192 Sum_probs=38.8
Q ss_pred HHHHHHHHHHcCCcEEEEecCC-CCCCHHHHHHHHHhcCCeEEEEEEEEe
Q 018376 90 PSKLVERAHCNGVKVLALTDHD-TMSGIPEAIETARRFGMKIIPGVEIST 138 (357)
Q Consensus 90 p~elv~~A~~~Gl~~iaITDHd-t~~g~~~~~~~a~~~gi~vi~GiEis~ 138 (357)
.+..+++|.++|++.+=|-||- .+.......+++++.|..+...+-++.
T Consensus 98 v~~~v~~a~~~Gidv~Rifd~lnd~~n~~~~i~~~k~~G~~~~~~i~yt~ 147 (596)
T PRK14042 98 VRAFVKLAVNNGVDVFRVFDALNDARNLKVAIDAIKSHKKHAQGAICYTT 147 (596)
T ss_pred HHHHHHHHHHcCCCEEEEcccCcchHHHHHHHHHHHHcCCEEEEEEEecC
Confidence 4557889999999999999984 466677778888889987776666654
No 110
>PRK05718 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=38.49 E-value=1.2e+02 Score=28.16 Aligned_cols=61 Identities=11% Similarity=0.006 Sum_probs=42.9
Q ss_pred HHHHHHHHHHcCCeEEeeCCCCCCChHHHHHHHHHcCCcEEEeecCCCcHHHHHHHHHHHhcC
Q 018376 253 AEVAVQLIHRTGGLAVLAHPWALKNPAAIIRKLKDVGLHGLEVYRSDGKLVDVNFLEKIDNFL 315 (357)
Q Consensus 253 ~eevI~~I~~aGGvaVLAHP~~~~~~~~li~~l~~~GlDGIEv~~~~~~~~~~~~~~lA~~~~ 315 (357)
..++.+.+.+.+=++|+-.+.. ....++.+.+.+.|++.||+-...... .+.+..+.+++.
T Consensus 5 ~~~~~~~l~~~~~iaV~r~~~~-~~a~~i~~al~~~Gi~~iEitl~~~~~-~~~I~~l~~~~p 65 (212)
T PRK05718 5 KTSIEEILRAGPVVPVIVINKL-EDAVPLAKALVAGGLPVLEVTLRTPAA-LEAIRLIAKEVP 65 (212)
T ss_pred HHHHHHHHHHCCEEEEEEcCCH-HHHHHHHHHHHHcCCCEEEEecCCccH-HHHHHHHHHHCC
Confidence 3467889999999999987632 222457788899999999997644322 224667777776
No 111
>cd01306 PhnM PhnM is believed to be a subunit of the membrane associated C-P lyase complex. C-P lyase is thought to catalyze the direct cleavage of inactivated C-P bonds to yield inorganic phosphate and the corresponding hydrocarbons. It is responsible for cleavage of alkylphosphonates, which are utilized as sole phosphorus sources by many bacteria.
Probab=38.48 E-value=4e+02 Score=26.26 Aligned_cols=45 Identities=13% Similarity=0.036 Sum_probs=34.2
Q ss_pred CceEEceeeeCcCC-CCCCCHHHHHHHHHHcCCcEEEEecCCCCCC
Q 018376 71 NNVVFELHSHSNFS-DGYLSPSKLVERAHCNGVKVLALTDHDTMSG 115 (357)
Q Consensus 71 ~~~~~DLH~HT~~S-DG~~tp~elv~~A~~~Gl~~iaITDHdt~~g 115 (357)
+...+|.++|-.|- ...-..+.+.+....-.++.+++.||-.-.+
T Consensus 78 ~~~~~d~~~hlR~E~~~~~~~~~~~~~~~~~~v~lvs~~dH~pg~~ 123 (325)
T cd01306 78 GVLRADHRLHLRCELADPAVLPELESLMADPRVHLVSLMDHTPGQR 123 (325)
T ss_pred CcchhhcceEEEEeecCccHHHHHHHHhcCCCcCEEEEeCCCCccc
Confidence 35788999998886 3345666677777777899999999977665
No 112
>COG0159 TrpA Tryptophan synthase alpha chain [Amino acid transport and metabolism]
Probab=38.32 E-value=2.1e+02 Score=27.57 Aligned_cols=82 Identities=18% Similarity=0.156 Sum_probs=47.6
Q ss_pred HHHHHHHHhhCCCCcccCCCCCCHHHHHHHHHHcC-CeEE----eeCCCCCCChHHHHHHHHHcCCcEEEeecCCCcHHH
Q 018376 230 LKQAFARYLYDGGPAYSTGSEPLAEVAVQLIHRTG-GLAV----LAHPWALKNPAAIIRKLKDVGLHGLEVYRSDGKLVD 304 (357)
Q Consensus 230 ~~~~f~~yl~~~~~~yv~~~~~~~eevI~~I~~aG-GvaV----LAHP~~~~~~~~li~~l~~~GlDGIEv~~~~~~~~~ 304 (357)
++.+-.+-|..+- .....-|.++.+++.+ .+++ .+-|-.....+..++++++.|+||+=+-- -+.++
T Consensus 64 Iq~A~~rAL~~g~------t~~~~lel~~~~r~~~~~~Pivlm~Y~Npi~~~Gie~F~~~~~~~GvdGlivpD--LP~ee 135 (265)
T COG0159 64 IQAAHLRALAAGV------TLEDTLELVEEIRAKGVKVPIVLMTYYNPIFNYGIEKFLRRAKEAGVDGLLVPD--LPPEE 135 (265)
T ss_pred HHHHHHHHHHCCC------CHHHHHHHHHHHHhcCCCCCEEEEEeccHHHHhhHHHHHHHHHHcCCCEEEeCC--CChHH
Confidence 5566666665431 1123345666666553 4333 22231111236678899999999997754 23222
Q ss_pred -HHHHHHHHhcCCcee
Q 018376 305 -VNFLEKIDNFLLLLC 319 (357)
Q Consensus 305 -~~~~~lA~~~~Ll~t 319 (357)
..+...|++|||-..
T Consensus 136 ~~~~~~~~~~~gi~~I 151 (265)
T COG0159 136 SDELLKAAEKHGIDPI 151 (265)
T ss_pred HHHHHHHHHHcCCcEE
Confidence 358899999998754
No 113
>PRK06552 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=38.10 E-value=48 Score=30.65 Aligned_cols=45 Identities=16% Similarity=0.187 Sum_probs=34.8
Q ss_pred CCCCHHHHHHHHHHcCCcEEEEecCCCCCCHHHHHHHHHhcCCeEEEEEE
Q 018376 86 GYLSPSKLVERAHCNGVKVLALTDHDTMSGIPEAIETARRFGMKIIPGVE 135 (357)
Q Consensus 86 G~~tp~elv~~A~~~Gl~~iaITDHdt~~g~~~~~~~a~~~gi~vi~GiE 135 (357)
|+..-.+-+++|.+.|.+++- +..--++..++|++.|+.++||+.
T Consensus 73 GTV~~~~~~~~a~~aGA~Fiv-----sP~~~~~v~~~~~~~~i~~iPG~~ 117 (213)
T PRK06552 73 GTVLDAVTARLAILAGAQFIV-----SPSFNRETAKICNLYQIPYLPGCM 117 (213)
T ss_pred eeCCCHHHHHHHHHcCCCEEE-----CCCCCHHHHHHHHHcCCCEECCcC
Confidence 444444457999999999976 333447888999999999999986
No 114
>PRK13111 trpA tryptophan synthase subunit alpha; Provisional
Probab=37.18 E-value=66 Score=30.66 Aligned_cols=48 Identities=21% Similarity=0.224 Sum_probs=35.4
Q ss_pred CCCHHHHHHHHHHcCCcEEEEecCCCCCCHHHHHHHHHhcCCeEEEEEE
Q 018376 87 YLSPSKLVERAHCNGVKVLALTDHDTMSGIPEAIETARRFGMKIIPGVE 135 (357)
Q Consensus 87 ~~tp~elv~~A~~~Gl~~iaITDHdt~~g~~~~~~~a~~~gi~vi~GiE 135 (357)
.+.++.++++|++.|++++-|.|= .+.-..++.+.|++.|+.+|+-+-
T Consensus 103 ~~G~e~f~~~~~~aGvdGviipDL-p~ee~~~~~~~~~~~gl~~I~lva 150 (258)
T PRK13111 103 QYGVERFAADAAEAGVDGLIIPDL-PPEEAEELRAAAKKHGLDLIFLVA 150 (258)
T ss_pred hcCHHHHHHHHHHcCCcEEEECCC-CHHHHHHHHHHHHHcCCcEEEEeC
Confidence 357889999999999999999873 333445667777888887775443
No 115
>cd01320 ADA Adenosine deaminase (ADA) is a monomeric zinc dependent enzyme which catalyzes the irreversible hydrolytic deamination of both adenosine, as well as desoxyadenosine, to ammonia and inosine or desoxyinosine, respectively. ADA plays an important role in the purine pathway. Low, as well as high levels of ADA activity have been linked to several diseases.
Probab=36.96 E-value=33 Score=33.16 Aligned_cols=29 Identities=41% Similarity=0.602 Sum_probs=25.6
Q ss_pred eEEceeeeCcCCCCCCCHHHHHHHHHHcCCcE
Q 018376 73 VVFELHSHSNFSDGYLSPSKLVERAHCNGVKV 104 (357)
Q Consensus 73 ~~~DLH~HT~~SDG~~tp~elv~~A~~~Gl~~ 104 (357)
.+++||+|- +|+++++.+.+.++++|++.
T Consensus 3 pK~elH~Hl---~Gs~~~~~l~~~~~~~~~~~ 31 (325)
T cd01320 3 PKAELHLHL---DGSLRPETILELAKKNGITL 31 (325)
T ss_pred CceEEeecc---cCCCCHHHHHHHHHHhCCCC
Confidence 489999997 68899999999999998764
No 116
>cd02071 MM_CoA_mut_B12_BD methylmalonyl CoA mutase B12 binding domain. This domain binds to B12 (adenosylcobamide), which initiates the conversion of succinyl CoA and methylmalonyl CoA by forming an adenosyl radical, which then undergoes a rearrangement exchanging a hydrogen atom with a group attached to a neighboring carbon atom. This family is present in both mammals and bacteria. Bacterial members are heterodimers and involved in the fermentation of pyruvate to propionate. Mammalian members are homodimers and responsible for the conversion of odd-chain fatty acids and branched-chain amino acids via propionyl CoA to succinyl CoA for further degradation.
Probab=36.77 E-value=73 Score=26.34 Aligned_cols=41 Identities=32% Similarity=0.420 Sum_probs=28.0
Q ss_pred CCCCHHHHHHHHHHcCCcEEEEecCC--CCCCHHHHHHHHHhc
Q 018376 86 GYLSPSKLVERAHCNGVKVLALTDHD--TMSGIPEAIETARRF 126 (357)
Q Consensus 86 G~~tp~elv~~A~~~Gl~~iaITDHd--t~~g~~~~~~~a~~~ 126 (357)
...+++++++.|.+.+-+.++|+==+ +.....++.+..++.
T Consensus 35 ~~vp~e~~~~~a~~~~~d~V~iS~~~~~~~~~~~~~~~~L~~~ 77 (122)
T cd02071 35 LRQTPEEIVEAAIQEDVDVIGLSSLSGGHMTLFPEVIELLREL 77 (122)
T ss_pred CCCCHHHHHHHHHHcCCCEEEEcccchhhHHHHHHHHHHHHhc
Confidence 35899999999999999999996332 222334444444444
No 117
>PF01261 AP_endonuc_2: Xylose isomerase-like TIM barrel; InterPro: IPR012307 This TIM alpha/beta barrel structure is found in xylose isomerase (P19148 from SWISSPROT) and in endonuclease IV (P12638 from SWISSPROT, 3.1.21.2 from EC). This domain is also found in the N termini of bacterial myo-inositol catabolism proteins. These are involved in the myo-inositol catabolism pathway, and is required for growth on myo-inositol in Rhizobium leguminosarum bv. viciae []. ; PDB: 3KWS_B 3DX5_A 3CQH_B 3CQI_A 3CQK_A 3CQJ_B 2G0W_B 1DXI_A 2ZDS_D 3TVA_B ....
Probab=36.66 E-value=29 Score=30.35 Aligned_cols=39 Identities=15% Similarity=0.350 Sum_probs=29.4
Q ss_pred HHHHHHcCCcEEEeecCCCc-H-----HHHHHHHHHHhcCCceee
Q 018376 282 IRKLKDVGLHGLEVYRSDGK-L-----VDVNFLEKIDNFLLLLCL 320 (357)
Q Consensus 282 i~~l~~~GlDGIEv~~~~~~-~-----~~~~~~~lA~~~~Ll~t~ 320 (357)
++.++++|++|||+...... . ....+.++++++||-++.
T Consensus 1 l~~~~~~G~~~vE~~~~~~~~~~~~~~~~~~~~~~~~~~gl~i~~ 45 (213)
T PF01261_consen 1 LEAAAEAGFDGVELRFDDGQPWDEKDDEAEELRRLLEDYGLKIAS 45 (213)
T ss_dssp HHHHHHTTHSEEEEEHHHHSHHTHHHHHHHHHHHHHHHTTCEEEE
T ss_pred ChHHHHcCCCEEEEecCCCcccccchHHHHHHHHHHHHcCCeEEE
Confidence 35678999999999885432 1 124689999999999653
No 118
>TIGR02967 guan_deamin guanine deaminase. This model describes guanine deaminase, which hydrolyzes guanine to xanthine and ammonia. Xanthine can then be converted to urate by xanthine dehydrogenase, and urate subsequently degraded. In some bacteria, the guanine deaminase gene is found near the xdhABC genes for xanthine dehydrogenase. Non-homologous forms of guanine deaminase also exist, as well as distantly related forms outside the scope of this model.
Probab=36.37 E-value=1e+02 Score=30.65 Aligned_cols=40 Identities=23% Similarity=0.328 Sum_probs=28.0
Q ss_pred HHHHHcCCcEEEEecCCCCC--CHHHHHHHHHhcCCeEEEEEEE
Q 018376 95 ERAHCNGVKVLALTDHDTMS--GIPEAIETARRFGMKIIPGVEI 136 (357)
Q Consensus 95 ~~A~~~Gl~~iaITDHdt~~--g~~~~~~~a~~~gi~vi~GiEi 136 (357)
..+.+.|+..+. ||.+.. ....+.+.+++.|++++.|...
T Consensus 97 ~e~l~~GvTtv~--d~~~~~~~~~~~~~~a~~~~G~R~~~~~~~ 138 (401)
T TIGR02967 97 DELLRNGTTTAL--VFATVHPESVDALFEAALKRGMRMIAGKVL 138 (401)
T ss_pred HHHHhCCCcEEE--eccccCHHHHHHHHHHHHHCCCeEEEeeee
Confidence 467888988765 765543 2345667778899998887654
No 119
>PRK06256 biotin synthase; Validated
Probab=36.23 E-value=1.4e+02 Score=29.10 Aligned_cols=65 Identities=17% Similarity=0.159 Sum_probs=39.1
Q ss_pred HHHHHHHHHHcCCeEEeeCCCCCCChHHHHHHHHHcCCcEEEee---c--------CCCcHHH-HHHHHHHHhcCCcee
Q 018376 253 AEVAVQLIHRTGGLAVLAHPWALKNPAAIIRKLKDVGLHGLEVY---R--------SDGKLVD-VNFLEKIDNFLLLLC 319 (357)
Q Consensus 253 ~eevI~~I~~aGGvaVLAHP~~~~~~~~li~~l~~~GlDGIEv~---~--------~~~~~~~-~~~~~lA~~~~Ll~t 319 (357)
+.++++.|++.-++.+.++.+. ...+.+..|+++|++.+-+. + +.++.+. ....+.|++.|+.++
T Consensus 128 ~~e~i~~i~~~~~i~~~~~~g~--l~~e~l~~LkeaG~~~v~~~lEts~~~~~~i~~~~t~~~~i~~i~~a~~~Gi~v~ 204 (336)
T PRK06256 128 VVEAVKAIKEETDLEICACLGL--LTEEQAERLKEAGVDRYNHNLETSRSYFPNVVTTHTYEDRIDTCEMVKAAGIEPC 204 (336)
T ss_pred HHHHHHHHHhcCCCcEEecCCc--CCHHHHHHHHHhCCCEEecCCccCHHHHhhcCCCCCHHHHHHHHHHHHHcCCeec
Confidence 4567777776666767777654 23567778888888776441 1 1111122 245677888887654
No 120
>PTZ00246 proteasome subunit alpha; Provisional
Probab=35.60 E-value=32 Score=32.37 Aligned_cols=38 Identities=16% Similarity=0.236 Sum_probs=32.4
Q ss_pred EEceeeeCcCC-CCCCCHHHHHHHHHHcCCcEEEEecCCC
Q 018376 74 VFELHSHSNFS-DGYLSPSKLVERAHCNGVKVLALTDHDT 112 (357)
Q Consensus 74 ~~DLH~HT~~S-DG~~tp~elv~~A~~~Gl~~iaITDHdt 112 (357)
..|+|+ |+|| ||.+---|+..+|.++|-..|||.--|.
T Consensus 4 ~yd~~~-~~fsp~Grl~QvEYA~~av~~g~t~Igik~~dg 42 (253)
T PTZ00246 4 RYDSRT-TTFSPEGRLYQVEYALEAINNASLTVGILCKEG 42 (253)
T ss_pred ccCCCC-ceECCCCEEhHHHHHHHHHHhCCCEEEEEECCE
Confidence 467888 4577 9999999999999999999999976553
No 121
>TIGR01212 radical SAM protein, TIGR01212 family. This uncharacterized protein family shows significant similarity to TIGR01211, a longer protein that is a histone acetyltransferase at its C-terminus and is a subunit of RNA polymerase II (in yeast). This family lacks the GNAT acetyltransferase domain.
Probab=35.29 E-value=74 Score=30.83 Aligned_cols=88 Identities=13% Similarity=0.164 Sum_probs=48.5
Q ss_pred HHhhCCCCcccCCCCCCHHHHHHHHHHcC---CeEEeeCCCCCCC-hHHHHHHHHHcCCc-EEEe----ecC--------
Q 018376 236 RYLYDGGPAYSTGSEPLAEVAVQLIHRTG---GLAVLAHPWALKN-PAAIIRKLKDVGLH-GLEV----YRS-------- 298 (357)
Q Consensus 236 ~yl~~~~~~yv~~~~~~~eevI~~I~~aG---GvaVLAHP~~~~~-~~~li~~l~~~GlD-GIEv----~~~-------- 298 (357)
-||+.+.|.|.+.+ .+.++++.|.+.. ++.+-++|..... ..+++.++.+.|++ .||+ .++
T Consensus 81 iyf~ggt~t~l~~~--~L~~l~~~i~~~~~~~~isi~trpd~l~~e~l~~L~~l~~~G~~~~i~lGlQS~~d~~L~~i~R 158 (302)
T TIGR01212 81 AYFQAYTNTYAPVE--VLKEMYEQALSYDDVVGLSVGTRPDCVPDEVLDLLAEYVERGYEVWVELGLQTAHDKTLKKINR 158 (302)
T ss_pred EEEECCCcCCCCHH--HHHHHHHHHhCCCCEEEEEEEecCCcCCHHHHHHHHHhhhCCceEEEEEccCcCCHHHHHHHcC
Confidence 36777766666532 2456666666554 4667778865432 12344555566873 3444 332
Q ss_pred CCcHHH-HHHHHHHHhcCCceeeccccc
Q 018376 299 DGKLVD-VNFLEKIDNFLLLLCLRQISN 325 (357)
Q Consensus 299 ~~~~~~-~~~~~lA~~~~Ll~t~~~~~G 325 (357)
.++.++ ....+.+++.|+.++.-.|.|
T Consensus 159 g~t~~~~~~ai~~l~~~gi~v~~~lI~G 186 (302)
T TIGR01212 159 GHDFACYVDAVKRARKRGIKVCSHVILG 186 (302)
T ss_pred cChHHHHHHHHHHHHHcCCEEEEeEEEC
Confidence 112222 356788889998766433434
No 122
>COG0399 WecE Predicted pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis [Cell envelope biogenesis, outer membrane]
Probab=35.12 E-value=1.4e+02 Score=30.22 Aligned_cols=80 Identities=9% Similarity=-0.037 Sum_probs=56.1
Q ss_pred hhCCCCcccCCCCCCHHHHHHHHHHcCCeEEeeCCCC--CCChHHHHHHHHHcCCcEEEeecCCCcH-HHHHHHHHHHhc
Q 018376 238 LYDGGPAYSTGSEPLAEVAVQLIHRTGGLAVLAHPWA--LKNPAAIIRKLKDVGLHGLEVYRSDGKL-VDVNFLEKIDNF 314 (357)
Q Consensus 238 l~~~~~~yv~~~~~~~eevI~~I~~aGGvaVLAHP~~--~~~~~~li~~l~~~GlDGIEv~~~~~~~-~~~~~~~lA~~~ 314 (357)
++.|...-+|. .+.-...+.|-..|..+|.+--.. +.-..+.|++...-...+|=..|-++.. +...+.++|++|
T Consensus 71 ig~GDeVI~ps--~TfvATan~i~~~Ga~PVFvDid~~T~nid~~~ie~aIt~~tKAIipVhl~G~~~dm~~i~~la~~~ 148 (374)
T COG0399 71 IGPGDEVIVPS--FTFVATANAVLLVGAKPVFVDIDPDTLNIDPDLIEAAITPRTKAIIPVHLAGQPCDMDAIMALAKRH 148 (374)
T ss_pred CCCCCEEEecC--CchHHHHHHHHHcCCeEEEEecCCcccCCCHHHHHHHcccCCeEEEEehhccCCCCHHHHHHHHHHc
Confidence 34454444443 456678899999999999997543 2223456666555558888888876643 345699999999
Q ss_pred CCcee
Q 018376 315 LLLLC 319 (357)
Q Consensus 315 ~Ll~t 319 (357)
||.+.
T Consensus 149 ~l~vI 153 (374)
T COG0399 149 GLPVI 153 (374)
T ss_pred CCeEE
Confidence 99985
No 123
>PF13380 CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5A_A 2D59_A 2E6U_X 1IUL_A 1IUK_A 1Y81_A 2DUW_A.
Probab=34.73 E-value=75 Score=26.21 Aligned_cols=42 Identities=33% Similarity=0.495 Sum_probs=29.7
Q ss_pred HHHHHHHHHHcCCcEEEEecCCCCCCHHHHHHHHHhcCCeEE-EEE
Q 018376 90 PSKLVERAHCNGVKVLALTDHDTMSGIPEAIETARRFGMKII-PGV 134 (357)
Q Consensus 90 p~elv~~A~~~Gl~~iaITDHdt~~g~~~~~~~a~~~gi~vi-~Gi 134 (357)
..++++++.+.|.+.+-+.-. .--+++.++|++.|++++ |++
T Consensus 68 ~~~~v~~~~~~g~~~v~~~~g---~~~~~~~~~a~~~gi~vigp~C 110 (116)
T PF13380_consen 68 VPEIVDEAAALGVKAVWLQPG---AESEELIEAAREAGIRVIGPNC 110 (116)
T ss_dssp HHHHHHHHHHHT-SEEEE-TT---S--HHHHHHHHHTT-EEEESS-
T ss_pred HHHHHHHHHHcCCCEEEEEcc---hHHHHHHHHHHHcCCEEEeCCc
Confidence 456899999999999999765 334778889999999988 543
No 124
>PRK10657 isoaspartyl dipeptidase; Provisional
Probab=34.27 E-value=1.1e+02 Score=30.03 Aligned_cols=59 Identities=12% Similarity=0.057 Sum_probs=39.5
Q ss_pred eEEceeeeCcCC---C--CCCCHHHHHHHHHHcCCcEEEEecCCCCCCH-------HHHHHHHHhcCCeEEEE
Q 018376 73 VVFELHSHSNFS---D--GYLSPSKLVERAHCNGVKVLALTDHDTMSGI-------PEAIETARRFGMKIIPG 133 (357)
Q Consensus 73 ~~~DLH~HT~~S---D--G~~tp~elv~~A~~~Gl~~iaITDHdt~~g~-------~~~~~~a~~~gi~vi~G 133 (357)
-.+|.|+|.... + ...+|+.....|...|...+. |.-...++ .+..+.+.+.|++.+.+
T Consensus 57 G~id~H~H~~~~~~~~~~~~~t~~~~~~~~~~~GvTTvv--d~~~~~~~~~~~~~~~~~~~~~~~~Gv~~~~~ 127 (388)
T PRK10657 57 GFIDQHVHIIGGGGEGGFSTRTPEVQLSDLTEAGITTVV--GLLGTDGITRSMESLLAKARALEEEGISAYMY 127 (388)
T ss_pred cceeeeeCcccCCCCcccccCCHHHHHHHHHhCCceEEE--CCCCCCCCCCCHHHHHHHHHHHHhhCCEEEEE
Confidence 689999998631 2 246889899999999998776 54422222 22334445778887744
No 125
>PRK05904 coproporphyrinogen III oxidase; Provisional
Probab=34.03 E-value=1.3e+02 Score=29.95 Aligned_cols=77 Identities=14% Similarity=0.225 Sum_probs=43.9
Q ss_pred HhhCCCCcccCCCCCCHHHHHHHHHHc----CCeEEeeCCCCCCChHHHHHHHHHcCCcEEEe----ecC--------CC
Q 018376 237 YLYDGGPAYSTGSEPLAEVAVQLIHRT----GGLAVLAHPWALKNPAAIIRKLKDVGLHGLEV----YRS--------DG 300 (357)
Q Consensus 237 yl~~~~~~yv~~~~~~~eevI~~I~~a----GGvaVLAHP~~~~~~~~li~~l~~~GlDGIEv----~~~--------~~ 300 (357)
|++.|.|...+.. .++++++.|++. --+.+-++|.... ++.++.|+++|+.-|.+ +++ .+
T Consensus 61 y~GGGTPs~L~~~--~l~~ll~~i~~~~~~~~eitiE~nP~~lt--~e~l~~lk~~G~nrisiGvQS~~d~vL~~l~R~~ 136 (353)
T PRK05904 61 YLGGGTPNCLNDQ--LLDILLSTIKPYVDNNCEFTIECNPELIT--QSQINLLKKNKVNRISLGVQSMNNNILKQLNRTH 136 (353)
T ss_pred EECCCccccCCHH--HHHHHHHHHHHhcCCCCeEEEEeccCcCC--HHHHHHHHHcCCCEEEEecccCCHHHHHHcCCCC
Confidence 4555555444322 235566666553 1477888886543 56788888888876554 321 11
Q ss_pred cHHH-HHHHHHHHhcCCc
Q 018376 301 KLVD-VNFLEKIDNFLLL 317 (357)
Q Consensus 301 ~~~~-~~~~~lA~~~~Ll 317 (357)
+.++ ....+.+++.|+.
T Consensus 137 ~~~~~~~ai~~lr~~G~~ 154 (353)
T PRK05904 137 TIQDSKEAINLLHKNGIY 154 (353)
T ss_pred CHHHHHHHHHHHHHcCCC
Confidence 1222 3467778888865
No 126
>TIGR01182 eda Entner-Doudoroff aldolase. 2-deydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) is an enzyme of the Entner-Doudoroff pathway. This aldolase has another function, 4-hydroxy-2-oxoglutarate aldolase (EC 4.1.3.16) shown experimentally in Escherichia coli and Pseudomonas putida
Probab=33.29 E-value=63 Score=29.78 Aligned_cols=45 Identities=27% Similarity=0.442 Sum_probs=34.6
Q ss_pred CCCCHHHHHHHHHHcCCcEEEEecCCCCCCHHHHHHHHHhcCCeEEEEEE
Q 018376 86 GYLSPSKLVERAHCNGVKVLALTDHDTMSGIPEAIETARRFGMKIIPGVE 135 (357)
Q Consensus 86 G~~tp~elv~~A~~~Gl~~iaITDHdt~~g~~~~~~~a~~~gi~vi~GiE 135 (357)
|+..-.+-+++|.+.|.+++ +|-+- -++..++|++.++.++||+=
T Consensus 65 GTVl~~~~a~~a~~aGA~Fi-vsP~~----~~~v~~~~~~~~i~~iPG~~ 109 (204)
T TIGR01182 65 GTVLNPEQLRQAVDAGAQFI-VSPGL----TPELAKHAQDHGIPIIPGVA 109 (204)
T ss_pred EeCCCHHHHHHHHHcCCCEE-ECCCC----CHHHHHHHHHcCCcEECCCC
Confidence 44333444899999999998 66653 36788899999999999973
No 127
>PRK08446 coproporphyrinogen III oxidase; Provisional
Probab=33.20 E-value=1.4e+02 Score=29.48 Aligned_cols=77 Identities=13% Similarity=0.245 Sum_probs=46.0
Q ss_pred HhhCCCCcccCCCCCCHHHHHHHHHHc--C--CeEEeeCCCCCCChHHHHHHHHHcCCcEEEe----ecC--------CC
Q 018376 237 YLYDGGPAYSTGSEPLAEVAVQLIHRT--G--GLAVLAHPWALKNPAAIIRKLKDVGLHGLEV----YRS--------DG 300 (357)
Q Consensus 237 yl~~~~~~yv~~~~~~~eevI~~I~~a--G--GvaVLAHP~~~~~~~~li~~l~~~GlDGIEv----~~~--------~~ 300 (357)
||+.|.|...+.. .+++++++|++. . -+.+-++|.... .+.+..|+++|++-|.+ +++ .+
T Consensus 56 yfGGGTPs~l~~~--~l~~ll~~i~~~~~~~~eitiE~nP~~~~--~e~l~~l~~~GvnRiSiGvQS~~~~~L~~lgR~~ 131 (350)
T PRK08446 56 FIGGGTPSTVSAK--FYEPIFEIISPYLSKDCEITTEANPNSAT--KAWLKGMKNLGVNRISFGVQSFNEDKLKFLGRIH 131 (350)
T ss_pred EECCCccccCCHH--HHHHHHHHHHHhcCCCceEEEEeCCCCCC--HHHHHHHHHcCCCEEEEecccCCHHHHHHcCCCC
Confidence 4555555433221 246677777663 1 367788887543 56788899999876654 332 11
Q ss_pred cHHH-HHHHHHHHhcCCc
Q 018376 301 KLVD-VNFLEKIDNFLLL 317 (357)
Q Consensus 301 ~~~~-~~~~~lA~~~~Ll 317 (357)
+.++ ....+.+++.|+.
T Consensus 132 ~~~~~~~ai~~lr~~g~~ 149 (350)
T PRK08446 132 SQKQIIKAIENAKKAGFE 149 (350)
T ss_pred CHHHHHHHHHHHHHcCCC
Confidence 2222 3567788888875
No 128
>PF06135 DUF965: Bacterial protein of unknown function (DUF965); InterPro: IPR009309 This family consists of several hypothetical bacterial proteins. The function of the family is unknown.
Probab=33.01 E-value=63 Score=25.35 Aligned_cols=40 Identities=35% Similarity=0.458 Sum_probs=25.8
Q ss_pred HHHHHHHcCccccHHHHHHHHhhCCCCcccCCCCCCHHHHHHHHHH
Q 018376 217 VARAMVEAGHVENLKQAFARYLYDGGPAYSTGSEPLAEVAVQLIHR 262 (357)
Q Consensus 217 ia~aLv~~g~~~~~~~~f~~yl~~~~~~yv~~~~~~~eevI~~I~~ 262 (357)
+..+|.++||-.- ...--||-.|.|+|++. -.++-.+|++
T Consensus 24 Vy~AL~EKGYnPi--nQivGYllSGDPaYIts----h~nAR~lIr~ 63 (79)
T PF06135_consen 24 VYAALEEKGYNPI--NQIVGYLLSGDPAYITS----HNNARNLIRK 63 (79)
T ss_pred HHHHHHHcCCChH--HHHHhheecCCCccccC----cccHHHHHHH
Confidence 4567778887543 22336888899999974 3455555554
No 129
>PRK13111 trpA tryptophan synthase subunit alpha; Provisional
Probab=32.98 E-value=2.5e+02 Score=26.72 Aligned_cols=47 Identities=13% Similarity=0.010 Sum_probs=22.6
Q ss_pred CHHHHHHHHHHcCCeEEeeCCCCC-CChHHHHHHHHHcCCcEEEeecCC
Q 018376 252 LAEVAVQLIHRTGGLAVLAHPWAL-KNPAAIIRKLKDVGLHGLEVYRSD 299 (357)
Q Consensus 252 ~~eevI~~I~~aGGvaVLAHP~~~-~~~~~li~~l~~~GlDGIEv~~~~ 299 (357)
..+..++...++|--.++- |... ....++++.+.+.|++-|=...+.
T Consensus 105 G~e~f~~~~~~aGvdGvii-pDLp~ee~~~~~~~~~~~gl~~I~lvap~ 152 (258)
T PRK13111 105 GVERFAADAAEAGVDGLII-PDLPPEEAEELRAAAKKHGLDLIFLVAPT 152 (258)
T ss_pred CHHHHHHHHHHcCCcEEEE-CCCCHHHHHHHHHHHHHcCCcEEEEeCCC
Confidence 4555666666665333333 3211 112344555566666666544443
No 130
>cd05014 SIS_Kpsf KpsF-like protein. KpsF is an arabinose-5-phosphate isomerase which contains SIS (Sugar ISomerase) domains. SIS domains are found in many phosphosugar isomerases and phosphosugar binding proteins. KpsF catalyzes the reversible reaction of ribulose 5-phosphate to arabinose 5-phosphate. This is the second step in the CMP-Kdo biosynthesis pathway.
Probab=32.91 E-value=52 Score=26.78 Aligned_cols=27 Identities=15% Similarity=0.176 Sum_probs=22.3
Q ss_pred CCCCHHHHHHHHHHcCCcEEEEecCCC
Q 018376 86 GYLSPSKLVERAHCNGVKVLALTDHDT 112 (357)
Q Consensus 86 G~~tp~elv~~A~~~Gl~~iaITDHdt 112 (357)
-+-...+.++.|+++|.+.++||+...
T Consensus 59 ~t~~~~~~~~~a~~~g~~vi~iT~~~~ 85 (128)
T cd05014 59 ETDELLNLLPHLKRRGAPIIAITGNPN 85 (128)
T ss_pred CCHHHHHHHHHHHHCCCeEEEEeCCCC
Confidence 345567889999999999999999654
No 131
>PRK02261 methylaspartate mutase subunit S; Provisional
Probab=32.85 E-value=1.5e+02 Score=25.35 Aligned_cols=40 Identities=8% Similarity=0.002 Sum_probs=29.0
Q ss_pred CCCHHHHHHHHHHcCCcEEEEecCCCCC--CHHHHHHHHHhc
Q 018376 87 YLSPSKLVERAHCNGVKVLALTDHDTMS--GIPEAIETARRF 126 (357)
Q Consensus 87 ~~tp~elv~~A~~~Gl~~iaITDHdt~~--g~~~~~~~a~~~ 126 (357)
..+++++++.|.+.+.++++|+=-.+.. ...++.+..++.
T Consensus 40 ~vp~e~i~~~a~~~~~d~V~lS~~~~~~~~~~~~~~~~L~~~ 81 (137)
T PRK02261 40 MTSQEEFIDAAIETDADAILVSSLYGHGEIDCRGLREKCIEA 81 (137)
T ss_pred CCCHHHHHHHHHHcCCCEEEEcCccccCHHHHHHHHHHHHhc
Confidence 4789999999999999999998765532 234444444444
No 132
>PRK09228 guanine deaminase; Provisional
Probab=32.78 E-value=1.2e+02 Score=30.76 Aligned_cols=40 Identities=20% Similarity=0.240 Sum_probs=27.5
Q ss_pred HHHHcCCcEEEEecCCCCC--CHHHHHHHHHhcCCeEEEEEEEE
Q 018376 96 RAHCNGVKVLALTDHDTMS--GIPEAIETARRFGMKIIPGVEIS 137 (357)
Q Consensus 96 ~A~~~Gl~~iaITDHdt~~--g~~~~~~~a~~~gi~vi~GiEis 137 (357)
.+.+.|...++ ||.+.. ..+.+.+++++.|++.+.|.++.
T Consensus 123 e~l~~G~Ttv~--d~~~~~~~~~~~~~~a~~~~GiR~~~~~~~~ 164 (433)
T PRK09228 123 ELLRNGTTTAL--VFGTVHPQSVDALFEAAEARNMRMIAGKVLM 164 (433)
T ss_pred HHHhCCceEEE--eccccCHHHHHHHHHHHHHcCCeEEeeeeee
Confidence 35677876664 776543 34556677788999998887764
No 133
>PRK02083 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=32.63 E-value=1.9e+02 Score=26.95 Aligned_cols=28 Identities=18% Similarity=0.124 Sum_probs=24.4
Q ss_pred CCCCCHHHHHHHHHHcCCcEEEEecCCC
Q 018376 85 DGYLSPSKLVERAHCNGVKVLALTDHDT 112 (357)
Q Consensus 85 DG~~tp~elv~~A~~~Gl~~iaITDHdt 112 (357)
....++.++++++.+.|++.+.+||++.
T Consensus 150 ~~~~~~~~~~~~~~~~g~~~ii~~~i~~ 177 (253)
T PRK02083 150 PTGLDAVEWAKEVEELGAGEILLTSMDR 177 (253)
T ss_pred ecCCCHHHHHHHHHHcCCCEEEEcCCcC
Confidence 3467899999999999999999999874
No 134
>PRK08599 coproporphyrinogen III oxidase; Provisional
Probab=32.59 E-value=1.7e+02 Score=28.96 Aligned_cols=64 Identities=20% Similarity=0.276 Sum_probs=40.2
Q ss_pred CHHHHHHHHHHc----C--CeEEeeCCCCCCChHHHHHHHHHcCCcEEEe----ecC--------CCcHHH-HHHHHHHH
Q 018376 252 LAEVAVQLIHRT----G--GLAVLAHPWALKNPAAIIRKLKDVGLHGLEV----YRS--------DGKLVD-VNFLEKID 312 (357)
Q Consensus 252 ~~eevI~~I~~a----G--GvaVLAHP~~~~~~~~li~~l~~~GlDGIEv----~~~--------~~~~~~-~~~~~lA~ 312 (357)
.++++++.|++. + .+.+-++|.... .+.+..|+++|+..|.+ +++ .++.+. ....+.++
T Consensus 69 ~l~~ll~~i~~~~~~~~~~eit~e~~p~~l~--~e~l~~l~~~G~~rvsiGvqS~~~~~l~~l~r~~~~~~~~~~i~~l~ 146 (377)
T PRK08599 69 QLERLLTAIHRNLPLSGLEEFTFEANPGDLT--KEKLQVLKDSGVNRISLGVQTFNDELLKKIGRTHNEEDVYEAIANAK 146 (377)
T ss_pred HHHHHHHHHHHhCCCCCCCEEEEEeCCCCCC--HHHHHHHHHcCCCEEEEecccCCHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 356777777774 2 367788886543 56788888999876655 332 111122 35677788
Q ss_pred hcCCc
Q 018376 313 NFLLL 317 (357)
Q Consensus 313 ~~~Ll 317 (357)
+.|+.
T Consensus 147 ~~g~~ 151 (377)
T PRK08599 147 KAGFD 151 (377)
T ss_pred HcCCC
Confidence 88864
No 135
>PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed
Probab=32.56 E-value=91 Score=34.33 Aligned_cols=23 Identities=17% Similarity=0.146 Sum_probs=17.2
Q ss_pred CHHHHHHHHHHcC-CeEE--eeCCCC
Q 018376 252 LAEVAVQLIHRTG-GLAV--LAHPWA 274 (357)
Q Consensus 252 ~~eevI~~I~~aG-GvaV--LAHP~~ 274 (357)
....++++||+.| ++++ |.|+++
T Consensus 476 ~~~~~~~~vh~~gg~~i~~QL~h~Gr 501 (765)
T PRK08255 476 AWKRIVDFVHANSDAKIGIQLGHSGR 501 (765)
T ss_pred HHHHHHHHHHhcCCceEEEEccCCcc
Confidence 4577899999995 6654 788664
No 136
>COG1082 IolE Sugar phosphate isomerases/epimerases [Carbohydrate transport and metabolism]
Probab=32.37 E-value=1.4e+02 Score=27.61 Aligned_cols=47 Identities=21% Similarity=0.347 Sum_probs=36.2
Q ss_pred CCCCHHHHHHHHHHcCCcEEEEecCCCCCC----HHHHHHHHHhcCCeEEE
Q 018376 86 GYLSPSKLVERAHCNGVKVLALTDHDTMSG----IPEAIETARRFGMKIIP 132 (357)
Q Consensus 86 G~~tp~elv~~A~~~Gl~~iaITDHdt~~g----~~~~~~~a~~~gi~vi~ 132 (357)
+..+++++++.+.+.|++.+-|..++...- ..++.+..++.|+.+..
T Consensus 13 ~~~~l~~~l~~~~~~G~~gvEi~~~~~~~~~~~~~~~l~~~l~~~gl~i~~ 63 (274)
T COG1082 13 GELPLEEILRKAAELGFDGVELSPGDLFPADYKELAELKELLADYGLEITS 63 (274)
T ss_pred CCCCHHHHHHHHHHhCCCeEecCCcccCCchhhhHHHHHHHHHHcCcEEEe
Confidence 678999999999999999999998544433 46677777777765443
No 137
>PRK00366 ispG 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; Reviewed
Probab=32.28 E-value=2.1e+02 Score=28.82 Aligned_cols=57 Identities=23% Similarity=0.389 Sum_probs=43.5
Q ss_pred eEEceeeeCcCCCCCCCHHHHHHHHHHcCCcEEEEecCCCCC---CHHHHHHHHHhcCCeEEEEEEEEee
Q 018376 73 VVFELHSHSNFSDGYLSPSKLVERAHCNGVKVLALTDHDTMS---GIPEAIETARRFGMKIIPGVEISTI 139 (357)
Q Consensus 73 ~~~DLH~HT~~SDG~~tp~elv~~A~~~Gl~~iaITDHdt~~---g~~~~~~~a~~~gi~vi~GiEis~~ 139 (357)
...|+|..- .+...|.+.|++.+=|.-=|--. -+.+..+.|++.++.+-.|+---..
T Consensus 83 lvADIHFd~----------~lAl~a~~~G~~~iRINPGNig~~~~~v~~vv~~ak~~~ipIRIGvN~GSL 142 (360)
T PRK00366 83 LVADIHFDY----------RLALAAAEAGADALRINPGNIGKRDERVREVVEAAKDYGIPIRIGVNAGSL 142 (360)
T ss_pred EEEecCCCH----------HHHHHHHHhCCCEEEECCCCCCchHHHHHHHHHHHHHCCCCEEEecCCccC
Confidence 788888543 46888999999999997755422 3566778899999999999866543
No 138
>PLN02591 tryptophan synthase
Probab=31.85 E-value=79 Score=30.05 Aligned_cols=44 Identities=16% Similarity=0.215 Sum_probs=34.6
Q ss_pred CCHHHHHHHHHHcCCcEEEEecCCCCCCHHHHHHHHHhcCCeEEE
Q 018376 88 LSPSKLVERAHCNGVKVLALTDHDTMSGIPEAIETARRFGMKIIP 132 (357)
Q Consensus 88 ~tp~elv~~A~~~Gl~~iaITDHdt~~g~~~~~~~a~~~gi~vi~ 132 (357)
+..+++++.|++.|++++-|-|= .+.-..++.+.|++.|+.+|+
T Consensus 93 ~G~~~F~~~~~~aGv~GviipDL-P~ee~~~~~~~~~~~gl~~I~ 136 (250)
T PLN02591 93 RGIDKFMATIKEAGVHGLVVPDL-PLEETEALRAEAAKNGIELVL 136 (250)
T ss_pred hHHHHHHHHHHHcCCCEEEeCCC-CHHHHHHHHHHHHHcCCeEEE
Confidence 56789999999999999999983 334455677778888887765
No 139
>PF01726 LexA_DNA_bind: LexA DNA binding domain; InterPro: IPR006199 This is the DNA binding domain of the LexA SOS regulon repressor which prevents expression of DNA repair proteins in bacteria. The aligned region contains a variant form of the helix-turn-helix DNA binding motif []. This domain usually at the N terminus is found associated with IPR006198 from INTERPRO the auto-proteolytic domain of LexA 3.4.21.88 from EC.; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 1LEA_A 1JHH_A 3JSP_A 1JHF_A 3JSO_B 1LEB_A 3K2Z_A.
Probab=31.80 E-value=96 Score=23.09 Aligned_cols=41 Identities=12% Similarity=0.118 Sum_probs=24.3
Q ss_pred HHHHhCCCCCCHHHHHHHhCCCCCCChHHHHHHHHHcCccc
Q 018376 188 LKLNKLKLPLKWEHVAKIAGKGVAPGRLHVARAMVEAGHVE 228 (357)
Q Consensus 188 ~~L~~~g~~i~~e~v~~~a~~~~~~~~~hia~aLv~~g~~~ 228 (357)
+...+.|++-+..++....+-.-..+-.+.+++|.++||+.
T Consensus 17 ~~~~~~G~~Pt~rEIa~~~g~~S~~tv~~~L~~Le~kG~I~ 57 (65)
T PF01726_consen 17 EYIEENGYPPTVREIAEALGLKSTSTVQRHLKALERKGYIR 57 (65)
T ss_dssp HHHHHHSS---HHHHHHHHTSSSHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHcCCCCCHHHHHHHhCCCChHHHHHHHHHHHHCcCcc
Confidence 34556799999999988876431122335567777888764
No 140
>PRK04147 N-acetylneuraminate lyase; Provisional
Probab=31.79 E-value=1.8e+02 Score=27.90 Aligned_cols=55 Identities=11% Similarity=0.149 Sum_probs=36.5
Q ss_pred CCeEEeeCCCCCC--ChHHHHHHHHHcCCcEEEeecCCC-c--HHH--HHHHHHHHhcCCce
Q 018376 264 GGLAVLAHPWALK--NPAAIIRKLKDVGLHGLEVYRSDG-K--LVD--VNFLEKIDNFLLLL 318 (357)
Q Consensus 264 GGvaVLAHP~~~~--~~~~li~~l~~~GlDGIEv~~~~~-~--~~~--~~~~~lA~~~~Ll~ 318 (357)
|.++|+|+-+... +..++.+.+.+.|.||+=+..|+. . .+. +++.++|+.-++.+
T Consensus 72 ~~~~viagvg~~~t~~ai~~a~~a~~~Gad~v~v~~P~y~~~~~~~l~~~f~~va~a~~lPv 133 (293)
T PRK04147 72 GKVKLIAQVGSVNTAEAQELAKYATELGYDAISAVTPFYYPFSFEEICDYYREIIDSADNPM 133 (293)
T ss_pred CCCCEEecCCCCCHHHHHHHHHHHHHcCCCEEEEeCCcCCCCCHHHHHHHHHHHHHhCCCCE
Confidence 4588899886533 123455667788999999988864 2 222 46778888766654
No 141
>CHL00200 trpA tryptophan synthase alpha subunit; Provisional
Probab=31.60 E-value=1e+02 Score=29.44 Aligned_cols=44 Identities=18% Similarity=0.241 Sum_probs=0.0
Q ss_pred HHHHHHHHHHcCCcEEEEecCCCCCCHHHHHHHHHhcCCeEEEEE
Q 018376 90 PSKLVERAHCNGVKVLALTDHDTMSGIPEAIETARRFGMKIIPGV 134 (357)
Q Consensus 90 p~elv~~A~~~Gl~~iaITDHdt~~g~~~~~~~a~~~gi~vi~Gi 134 (357)
.+..++.|++.|++++.|-| -.+.-..++.+.+++.|+.+++=+
T Consensus 108 ~e~F~~~~~~aGvdgviipD-LP~ee~~~~~~~~~~~gi~~I~lv 151 (263)
T CHL00200 108 INKFIKKISQAGVKGLIIPD-LPYEESDYLISVCNLYNIELILLI 151 (263)
T ss_pred HHHHHHHHHHcCCeEEEecC-CCHHHHHHHHHHHHHcCCCEEEEE
No 142
>COG0329 DapA Dihydrodipicolinate synthase/N-acetylneuraminate lyase [Amino acid transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=31.52 E-value=1.6e+02 Score=28.57 Aligned_cols=59 Identities=15% Similarity=0.202 Sum_probs=42.0
Q ss_pred HHHcCC-eEEeeCCCCCCC--hHHHHHHHHHcCCcEEEeecCCCc---HHH--HHHHHHHHhcCCce
Q 018376 260 IHRTGG-LAVLAHPWALKN--PAAIIRKLKDVGLHGLEVYRSDGK---LVD--VNFLEKIDNFLLLL 318 (357)
Q Consensus 260 I~~aGG-vaVLAHP~~~~~--~~~li~~l~~~GlDGIEv~~~~~~---~~~--~~~~~lA~~~~Ll~ 318 (357)
+..++| ++|+|+-+.... .-++.+...+.|.||+=+..|+.. ++. +.+..+|+.-+|.+
T Consensus 67 v~~~~grvpviaG~g~~~t~eai~lak~a~~~Gad~il~v~PyY~k~~~~gl~~hf~~ia~a~~lPv 133 (299)
T COG0329 67 VEAVGGRVPVIAGVGSNSTAEAIELAKHAEKLGADGILVVPPYYNKPSQEGLYAHFKAIAEAVDLPV 133 (299)
T ss_pred HHHHCCCCcEEEecCCCcHHHHHHHHHHHHhcCCCEEEEeCCCCcCCChHHHHHHHHHHHHhcCCCE
Confidence 445566 789999886432 245666778899999999998752 222 46888888888854
No 143
>PF13704 Glyco_tranf_2_4: Glycosyl transferase family 2
Probab=31.50 E-value=85 Score=24.25 Aligned_cols=32 Identities=16% Similarity=0.247 Sum_probs=27.6
Q ss_pred HHHHHHHHHHcCCcEEEEecCCCCCCHHHHHH
Q 018376 90 PSKLVERAHCNGVKVLALTDHDTMSGIPEAIE 121 (357)
Q Consensus 90 p~elv~~A~~~Gl~~iaITDHdt~~g~~~~~~ 121 (357)
..+.+......|++.+-|-|+++..+..++.+
T Consensus 7 L~~wl~~~~~lG~d~i~i~d~~s~D~t~~~l~ 38 (97)
T PF13704_consen 7 LPEWLAHHLALGVDHIYIYDDGSTDGTREILR 38 (97)
T ss_pred HHHHHHHHHHcCCCEEEEEECCCCccHHHHHH
Confidence 56778888999999999999999999877654
No 144
>PF00046 Homeobox: Homeobox domain not present here.; InterPro: IPR001356 The homeobox domain was first identified in a number of drosophila homeotic and segmentation proteins, but is now known to be well-conserved in many other animals, including vertebrates [, , ]. Hox genes encode homeodomain-containing transcriptional regulators that operate differential genetic programs along the anterior-posterior axis of animal bodies []. The domain binds DNA through a helix-turn-helix (HTH) structure. The HTH motif is characterised by two alpha-helices, which make intimate contacts with the DNA and are joined by a short turn. The second helix binds to DNA via a number of hydrogen bonds and hydrophobic interactions, which occur between specific side chains and the exposed bases and thymine methyl groups within the major groove of the DNA []. The first helix helps to stabilise the structure. The motif is very similar in sequence and structure in a wide range of DNA-binding proteins (e.g., cro and repressor proteins, homeotic proteins, etc.). One of the principal differences between HTH motifs in these different proteins arises from the stereo-chemical requirement for glycine in the turn which is needed to avoid steric interference of the beta-carbon with the main chain: for cro and repressor proteins the glycine appears to be mandatory, while for many of the homeotic and other DNA-binding proteins the requirement is relaxed.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 2DA3_A 1LFB_A 2LFB_A 2ECB_A 2DA5_A 3D1N_O 3A03_A 2XSD_C 3CMY_A 1AHD_P ....
Probab=31.22 E-value=1e+02 Score=21.42 Aligned_cols=20 Identities=15% Similarity=0.111 Sum_probs=17.4
Q ss_pred CCCCCCCHHHHhHHHHHhhh
Q 018376 24 GGKKKMTAEQSLAFNSVTEW 43 (357)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~~~ 43 (357)
+++..+|.+|...|..+++-
T Consensus 2 r~r~~~t~~q~~~L~~~f~~ 21 (57)
T PF00046_consen 2 RKRTRFTKEQLKVLEEYFQE 21 (57)
T ss_dssp SSSSSSSHHHHHHHHHHHHH
T ss_pred cCCCCCCHHHHHHHHHHHHH
Confidence 56788999999999999984
No 145
>PRK06380 metal-dependent hydrolase; Provisional
Probab=30.55 E-value=1.5e+02 Score=29.77 Aligned_cols=60 Identities=12% Similarity=0.201 Sum_probs=38.9
Q ss_pred eEEceeeeCcCC--CC-------------------CCCHHHH-------HHHHHHcCCcEEEEecCCCCCCHHHHHHHHH
Q 018376 73 VVFELHSHSNFS--DG-------------------YLSPSKL-------VERAHCNGVKVLALTDHDTMSGIPEAIETAR 124 (357)
Q Consensus 73 ~~~DLH~HT~~S--DG-------------------~~tp~el-------v~~A~~~Gl~~iaITDHdt~~g~~~~~~~a~ 124 (357)
-++|.|+|...+ .| .++++++ +..+.+.|...+ .|+.. ....+.++++
T Consensus 55 G~Vd~H~Hl~~~~~rg~~~~~~l~~~~~~~~~~~~~~~~e~~~~~~~~~~~e~l~~G~Tt~--~d~~~--~~~~~~~a~~ 130 (418)
T PRK06380 55 GLINTHAHVGMTASKGLFDDVDLEEFLMKTFKYDSKRTREGIYNSAKLGMYEMINSGITAF--VDLYY--SEDIIAKAAE 130 (418)
T ss_pred CEEeeccCCCccccCCcccCCCHHHHHHHHHhhhhcCCHHHHHHHHHHHHHHHHhcCCeEE--Ecccc--ChHHHHHHHH
Confidence 599999998765 22 2455554 334567788754 46542 2345566777
Q ss_pred hcCCeEEEEEEE
Q 018376 125 RFGMKIIPGVEI 136 (357)
Q Consensus 125 ~~gi~vi~GiEi 136 (357)
+.|++.+.|.+.
T Consensus 131 ~~G~r~~~~~~~ 142 (418)
T PRK06380 131 ELGIRAFLSWAV 142 (418)
T ss_pred HhCCeEEEeccc
Confidence 889988887654
No 146
>PF01081 Aldolase: KDPG and KHG aldolase; InterPro: IPR000887 4-Hydroxy-2-oxoglutarate aldolase (4.1.3.16 from EC) (KHG-aldolase) catalyzes the interconversion of 4-hydroxy-2-oxoglutarate into pyruvate and glyoxylate. Phospho-2-dehydro-3-deoxygluconate aldolase (4.1.2.14 from EC) (KDPG-aldolase) catalyzes the interconversion of 6-phospho-2-dehydro-3-deoxy-D-gluconate into pyruvate and glyceraldehyde 3-phosphate. These two enzymes are structurally and functionally related []. They are both homotrimeric proteins of approximately 220 amino-acid residues. They are class I aldolases whose catalytic mechanism involves the formation of a Schiff-base intermediate between the substrate and the epsilon-amino group of a lysine residue. In both enzymes, an arginine is required for catalytic activity.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3VCR_A 1FQ0_A 1EUN_A 1EUA_B 1FWR_A 2C0A_B 1WBH_A 1WAU_A 2YW3_B 2YW4_A ....
Probab=30.38 E-value=80 Score=28.91 Aligned_cols=44 Identities=34% Similarity=0.531 Sum_probs=31.9
Q ss_pred CCCCHHHHHHHHHHcCCcEEEEecCCCCCCHHHHHHHHHhcCCeEEEEE
Q 018376 86 GYLSPSKLVERAHCNGVKVLALTDHDTMSGIPEAIETARRFGMKIIPGV 134 (357)
Q Consensus 86 G~~tp~elv~~A~~~Gl~~iaITDHdt~~g~~~~~~~a~~~gi~vi~Gi 134 (357)
|+..-.+-+++|.+.|.+++- |-+- -++..++|++.++.++||+
T Consensus 65 GTV~~~e~a~~a~~aGA~Fiv-SP~~----~~~v~~~~~~~~i~~iPG~ 108 (196)
T PF01081_consen 65 GTVLTAEQAEAAIAAGAQFIV-SPGF----DPEVIEYAREYGIPYIPGV 108 (196)
T ss_dssp ES--SHHHHHHHHHHT-SEEE-ESS------HHHHHHHHHHTSEEEEEE
T ss_pred EeccCHHHHHHHHHcCCCEEE-CCCC----CHHHHHHHHHcCCcccCCc
Confidence 454445568999999999864 4432 3788899999999999998
No 147
>cd00952 CHBPH_aldolase Trans-o-hydroxybenzylidenepyruvate hydratase-aldolase (HBPHA) and trans-2'-carboxybenzalpyruvate hydratase-aldolase (CBPHA). HBPHA catalyzes HBP to salicyaldehyde and pyruvate. This reaction is part of the degradative pathways for naphthalene and naphthalenesulfonates by bacteria. CBPHA is homologous to HBPHA and catalyzes the cleavage of CBP to 2-carboxylbenzaldehyde and pyruvate during the degradation of phenanthrene. They are member of the DHDPS family of Schiff-base-dependent class I aldolases.
Probab=30.30 E-value=1.8e+02 Score=28.29 Aligned_cols=57 Identities=18% Similarity=0.204 Sum_probs=38.4
Q ss_pred cCCeEEeeCCCCCC--ChHHHHHHHHHcCCcEEEeecCCC-c--HHH--HHHHHHHHhc-CCcee
Q 018376 263 TGGLAVLAHPWALK--NPAAIIRKLKDVGLHGLEVYRSDG-K--LVD--VNFLEKIDNF-LLLLC 319 (357)
Q Consensus 263 aGGvaVLAHP~~~~--~~~~li~~l~~~GlDGIEv~~~~~-~--~~~--~~~~~lA~~~-~Ll~t 319 (357)
.|.++|++|-+... ...++.+.+.++|.||+=+..|+. . .+. .++..+|+.- +|.+.
T Consensus 75 ~grvpvi~Gv~~~~t~~ai~~a~~A~~~Gad~vlv~~P~y~~~~~~~l~~yf~~va~a~~~lPv~ 139 (309)
T cd00952 75 AGRVPVFVGATTLNTRDTIARTRALLDLGADGTMLGRPMWLPLDVDTAVQFYRDVAEAVPEMAIA 139 (309)
T ss_pred CCCCCEEEEeccCCHHHHHHHHHHHHHhCCCEEEECCCcCCCCCHHHHHHHHHHHHHhCCCCcEE
Confidence 34589999987533 224456667888999999988854 2 222 4678888877 46543
No 148
>PRK03620 5-dehydro-4-deoxyglucarate dehydratase; Provisional
Probab=29.94 E-value=2.1e+02 Score=27.69 Aligned_cols=55 Identities=11% Similarity=0.038 Sum_probs=37.0
Q ss_pred cCCeEEeeCCCCCCCh---HHHHHHHHHcCCcEEEeecCCCc---HHH--HHHHHHHHhcCCcee
Q 018376 263 TGGLAVLAHPWALKNP---AAIIRKLKDVGLHGLEVYRSDGK---LVD--VNFLEKIDNFLLLLC 319 (357)
Q Consensus 263 aGGvaVLAHP~~~~~~---~~li~~l~~~GlDGIEv~~~~~~---~~~--~~~~~lA~~~~Ll~t 319 (357)
.|.++|+|+-+. +. -++.+.+.+.|.||+-+..|+.. .+. .++.++|+.-++.+.
T Consensus 74 ~~~~pvi~gv~~--~t~~~i~~~~~a~~~Gadav~~~pP~y~~~~~~~i~~~f~~va~~~~lpi~ 136 (303)
T PRK03620 74 AGRVPVIAGAGG--GTAQAIEYAQAAERAGADGILLLPPYLTEAPQEGLAAHVEAVCKSTDLGVI 136 (303)
T ss_pred CCCCcEEEecCC--CHHHHHHHHHHHHHhCCCEEEECCCCCCCCCHHHHHHHHHHHHHhCCCCEE
Confidence 455889988763 32 33555667889999999888642 222 467788888776643
No 149
>TIGR00683 nanA N-acetylneuraminate lyase. N-acetylneuraminate lyase is also known as N-acetylneuraminic acid aldolase, sialic acid aldolase, or sialate lyase. It is an intracellular enzyme. The structure of this homotetrameric enzyme related to dihydrodipicolinate synthase is known. In Clostridium tertium, the enzyme appears to be in an operon with a secreted sialidase that releases sialic acid from host sialoglycoconjugates. In several E. coli strains, however, this enzyme is responsible for N-acetyl-D-neuraminic acid synthesis for capsule production by condensing N-acetyl-D-mannosamine and pyruvate.
Probab=29.70 E-value=2.6e+02 Score=26.79 Aligned_cols=55 Identities=11% Similarity=0.065 Sum_probs=36.1
Q ss_pred CCeEEeeCCCCCCC--hHHHHHHHHHcCCcEEEeecCCC---cHHH--HHHHHHHHhc-CCce
Q 018376 264 GGLAVLAHPWALKN--PAAIIRKLKDVGLHGLEVYRSDG---KLVD--VNFLEKIDNF-LLLL 318 (357)
Q Consensus 264 GGvaVLAHP~~~~~--~~~li~~l~~~GlDGIEv~~~~~---~~~~--~~~~~lA~~~-~Ll~ 318 (357)
|-++|+++-+.... ..++.+.+.+.|.||+=+..|+. +.+. .++.++|+.. +|.+
T Consensus 69 ~~~pvi~gv~~~~t~~~i~la~~a~~~Gad~v~v~~P~y~~~~~~~i~~yf~~v~~~~~~lpv 131 (290)
T TIGR00683 69 DQIALIAQVGSVNLKEAVELGKYATELGYDCLSAVTPFYYKFSFPEIKHYYDTIIAETGGLNM 131 (290)
T ss_pred CCCcEEEecCCCCHHHHHHHHHHHHHhCCCEEEEeCCcCCCCCHHHHHHHHHHHHhhCCCCCE
Confidence 45889998875332 24456677888999999988764 2222 4677887755 4443
No 150
>cd00951 KDGDH 5-dehydro-4-deoxyglucarate dehydratase, also called 5-keto-4-deoxy-glucarate dehydratase (KDGDH), which is member of dihydrodipicolinate synthase (DHDPS) family that comprises several pyruvate-dependent class I aldolases. The enzyme is involved in glucarate metabolism, and its mechanism presumbly involves a Schiff-base intermediate similar to members of DHDPS family. While in the case of Pseudomonas sp. 5-dehydro-4-deoxy-D-glucarate is degraded by KDGDH to 2,5-dioxopentanoate, in certain species of Enterobacteriaceae it is degraded instead to pyruvate and glycerate.
Probab=29.69 E-value=2.5e+02 Score=26.81 Aligned_cols=56 Identities=14% Similarity=0.043 Sum_probs=38.3
Q ss_pred cCCeEEeeCCCCCCC--hHHHHHHHHHcCCcEEEeecCCCc---HHH--HHHHHHHHhcCCcee
Q 018376 263 TGGLAVLAHPWALKN--PAAIIRKLKDVGLHGLEVYRSDGK---LVD--VNFLEKIDNFLLLLC 319 (357)
Q Consensus 263 aGGvaVLAHP~~~~~--~~~li~~l~~~GlDGIEv~~~~~~---~~~--~~~~~lA~~~~Ll~t 319 (357)
.|.++|++|-+. .. .-++.+.+.+.|.||+-+..|+.. .+. .++.++|+.-++.+.
T Consensus 67 ~~~~pvi~gv~~-~t~~~i~~a~~a~~~Gad~v~~~pP~y~~~~~~~i~~~f~~v~~~~~~pi~ 129 (289)
T cd00951 67 AGRVPVLAGAGY-GTATAIAYAQAAEKAGADGILLLPPYLTEAPQEGLYAHVEAVCKSTDLGVI 129 (289)
T ss_pred CCCCCEEEecCC-CHHHHHHHHHHHHHhCCCEEEECCCCCCCCCHHHHHHHHHHHHhcCCCCEE
Confidence 466999999864 21 134556678899999999888652 222 467788887776543
No 151
>PRK13347 coproporphyrinogen III oxidase; Provisional
Probab=29.66 E-value=1.5e+02 Score=30.50 Aligned_cols=42 Identities=17% Similarity=0.241 Sum_probs=25.5
Q ss_pred CHHHHHHHHHHcC------CeEEeeCCCCCCChHHHHHHHHHcCCcEEEe
Q 018376 252 LAEVAVQLIHRTG------GLAVLAHPWALKNPAAIIRKLKDVGLHGLEV 295 (357)
Q Consensus 252 ~~eevI~~I~~aG------GvaVLAHP~~~~~~~~li~~l~~~GlDGIEv 295 (357)
.++++++.|++.- -+.+-++|.... .+.+..|+++|++-|.+
T Consensus 121 ~l~~ll~~i~~~~~~~~~~e~tie~~p~~lt--~e~l~~L~~~G~~rvsi 168 (453)
T PRK13347 121 QFERLMAALRDAFDFAPEAEIAVEIDPRTVT--AEMLQALAALGFNRASF 168 (453)
T ss_pred HHHHHHHHHHHhCCCCCCceEEEEeccccCC--HHHHHHHHHcCCCEEEE
Confidence 3566666666531 345566775432 46677777777766655
No 152
>TIGR00674 dapA dihydrodipicolinate synthase. Dihydrodipicolinate synthase is a homotetrameric enzyme of lysine biosynthesis. E. coli has several paralogs closely related to dihydrodipicoline synthase (DapA), as well as the more distant N-acetylneuraminate lyase. In Pyrococcus horikoshii, the bidirectional best hit with E. coli is to an uncharacterized paralog of DapA, not DapA itself, and it is omitted from the seed. The putative members from the Chlamydias (pathogens with a parasitic metabolism) are easily the most divergent members of the multiple alignment.
Probab=29.63 E-value=2.2e+02 Score=27.13 Aligned_cols=56 Identities=20% Similarity=0.189 Sum_probs=35.2
Q ss_pred CCeEEeeCCCCCCC--hHHHHHHHHHcCCcEEEeecCCC-c--HHH--HHHHHHHHhcCCcee
Q 018376 264 GGLAVLAHPWALKN--PAAIIRKLKDVGLHGLEVYRSDG-K--LVD--VNFLEKIDNFLLLLC 319 (357)
Q Consensus 264 GGvaVLAHP~~~~~--~~~li~~l~~~GlDGIEv~~~~~-~--~~~--~~~~~lA~~~~Ll~t 319 (357)
|-++|++|-+.... .-++.+.+.+.|.||+=+..|+. . .+. .++.++|+.-++.+.
T Consensus 66 ~~~~vi~gv~~~s~~~~i~~a~~a~~~Gad~v~v~pP~y~~~~~~~i~~~~~~i~~~~~~pi~ 128 (285)
T TIGR00674 66 GRVPVIAGTGSNATEEAISLTKFAEDVGADGFLVVTPYYNKPTQEGLYQHFKAIAEEVDLPII 128 (285)
T ss_pred CCCeEEEeCCCccHHHHHHHHHHHHHcCCCEEEEcCCcCCCCCHHHHHHHHHHHHhcCCCCEE
Confidence 44888888764321 23455667788888888887754 1 222 467778877666543
No 153
>PRK01060 endonuclease IV; Provisional
Probab=29.63 E-value=1.4e+02 Score=27.96 Aligned_cols=40 Identities=5% Similarity=0.134 Sum_probs=26.4
Q ss_pred hHHHHHHHHHcCCcEEEeecC--C------CcH-HHHHHHHHHHhcCCc
Q 018376 278 PAAIIRKLKDVGLHGLEVYRS--D------GKL-VDVNFLEKIDNFLLL 317 (357)
Q Consensus 278 ~~~li~~l~~~GlDGIEv~~~--~------~~~-~~~~~~~lA~~~~Ll 317 (357)
..+.++.++++|+||||++-. . .+. ....+.++++++||-
T Consensus 14 ~~~~l~~~~~~G~d~vEl~~~~p~~~~~~~~~~~~~~~lk~~~~~~gl~ 62 (281)
T PRK01060 14 LEGAVAEAAEIGANAFMIFTGNPQQWKRKPLEELNIEAFKAACEKYGIS 62 (281)
T ss_pred HHHHHHHHHHcCCCEEEEECCCCCCCcCCCCCHHHHHHHHHHHHHcCCC
Confidence 456778888888888888642 1 011 123577888888885
No 154
>PRK13307 bifunctional formaldehyde-activating enzyme/3-hexulose-6-phosphate synthase; Provisional
Probab=29.50 E-value=2.4e+02 Score=28.71 Aligned_cols=63 Identities=6% Similarity=-0.029 Sum_probs=39.2
Q ss_pred HHHHHHHHcC-CeEEeeCCCCCCChHHH-HHHHHHcCCcEEEeecCCCcHHHHHHHHHHHhcCCce
Q 018376 255 VAVQLIHRTG-GLAVLAHPWALKNPAAI-IRKLKDVGLHGLEVYRSDGKLVDVNFLEKIDNFLLLL 318 (357)
Q Consensus 255 evI~~I~~aG-GvaVLAHP~~~~~~~~l-i~~l~~~GlDGIEv~~~~~~~~~~~~~~lA~~~~Ll~ 318 (357)
++|+.|++.| ...|.+|--- .++... ++.+.++|.|.+-|.............+.++++|+..
T Consensus 215 ~iVk~Lr~~~~~~~I~~DLK~-~Di~~~vv~~~a~aGAD~vTVH~ea~~~ti~~ai~~akk~Gikv 279 (391)
T PRK13307 215 EVISKIREVRPDAFIVADLKT-LDTGNLEARMAADATADAVVISGLAPISTIEKAIHEAQKTGIYS 279 (391)
T ss_pred HHHHHHHHhCCCCeEEEEecc-cChhhHHHHHHHhcCCCEEEEeccCCHHHHHHHHHHHHHcCCEE
Confidence 5677777764 4667777432 222233 6677788888888877544333345777788888554
No 155
>PF01208 URO-D: Uroporphyrinogen decarboxylase (URO-D); InterPro: IPR000257 Uroporphyrinogen decarboxylase (URO-D), the fifth enzyme of the haem biosynthetic pathway, catalyses the sequential decarboxylation of the four acetyl side chains of uroporphyrinogen to yield coproporphyrinogen []. URO-D deficiency is responsible for the human genetic diseases familial porphyria cutanea tarda (fPCT) and hepatoerythropoietic porphyria (HEP). The sequence of URO-D has been well conserved throughout evolution. The best conserved region is located in the N-terminal section; it contains a perfectly conserved hexapeptide. There are two arginine residues in this hexapeptide which could be involved in the binding, via salt bridges, to the carboxyl groups of the propionate side chains of the substrate. The crystal structure of human uroporphyrinogen decarboxylase shows it as comprised of a single domain containing a (beta/alpha)8-barrel with a deep active site cleft formed by loops at the C-terminal ends of the barrel strands. URO-D is a dimer in solution. Dimerisation juxtaposes the active site clefts of the monomers, suggesting a functionally important interaction between the catalytic centres [].; GO: 0004853 uroporphyrinogen decarboxylase activity, 0006779 porphyrin-containing compound biosynthetic process; PDB: 4EXQ_A 2INF_C 1J93_A 3GW0_A 1R3Q_A 1JPH_A 1JPI_A 3GVR_A 3GVW_A 3GVV_A ....
Probab=29.47 E-value=71 Score=31.03 Aligned_cols=46 Identities=24% Similarity=0.335 Sum_probs=32.4
Q ss_pred CCHHHHHHHHHHcCCeEEeeCCCCCCChHHHHHHHHHcCCcEEEeecC
Q 018376 251 PLAEVAVQLIHRTGGLAVLAHPWALKNPAAIIRKLKDVGLHGLEVYRS 298 (357)
Q Consensus 251 ~~~eevI~~I~~aGGvaVLAHP~~~~~~~~li~~l~~~GlDGIEv~~~ 298 (357)
|...++++.||+.|+-.+.-|.... ...+++.+++.|+|++.+-+.
T Consensus 220 P~~k~i~~~i~~~g~~~~~lH~cG~--~~~~~~~l~~~g~d~~~~~~~ 265 (343)
T PF01208_consen 220 PYLKKIIDAIKEAGKDPVILHICGN--TTPILDDLADLGADVLSVDEK 265 (343)
T ss_dssp HHHHHHHHHHHHHETE-EEEEETTH--G-GGHHHHHTSS-SEEEE-TT
T ss_pred HHHHHHHHHHHHhCCCceEEEECCc--hHHHHHHHHhcCCCEEEEcCC
Confidence 4567899999999974566776532 234788899999999998553
No 156
>cd00717 URO-D Uroporphyrinogen decarboxylase (URO-D) is a dimeric cytosolic enzyme that decarboxylates the four acetate side chains of uroporphyrinogen III (uro-III) to create coproporphyrinogen III, without requiring any prosthetic groups or cofactors. This reaction is located at the branching point of the tetrapyrrole biosynthetic pathway, leading to the biosynthesis of heme, chlorophyll or bacteriochlorophyll. URO-D deficiency is responsible for the human genetic diseases familial porphyria cutanea tarda (fPCT) and hepatoerythropoietic porphyria (HEP).
Probab=29.38 E-value=2.2e+02 Score=27.66 Aligned_cols=45 Identities=11% Similarity=0.256 Sum_probs=34.9
Q ss_pred CCHHHHHHHHHHcC-CeEEeeCCCCCCChHHHHHHHHHcCCcEEEeecC
Q 018376 251 PLAEVAVQLIHRTG-GLAVLAHPWALKNPAAIIRKLKDVGLHGLEVYRS 298 (357)
Q Consensus 251 ~~~eevI~~I~~aG-GvaVLAHP~~~~~~~~li~~l~~~GlDGIEv~~~ 298 (357)
|...++++.|+..| |+.++=|.+. ...+++.+++.|++++-+-+.
T Consensus 215 P~~k~i~~~i~~~~~~~~ilh~cg~---~~~~~~~~~~~~~~~~s~d~~ 260 (335)
T cd00717 215 PYLKRIIEEVKKRLPGVPVILFAKG---AGGLLEDLAQLGADVVGLDWR 260 (335)
T ss_pred HHHHHHHHHHHHhCCCCCEEEEcCC---CHHHHHHHHhcCCCEEEeCCC
Confidence 55688999999997 7778777653 236789999999999877553
No 157
>cd03753 proteasome_alpha_type_5 proteasome_alpha_type_5. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=29.37 E-value=48 Score=30.18 Aligned_cols=37 Identities=16% Similarity=0.262 Sum_probs=31.9
Q ss_pred EceeeeCcCC-CCCCCHHHHHHHHHHcCCcEEEEecCCC
Q 018376 75 FELHSHSNFS-DGYLSPSKLVERAHCNGVKVLALTDHDT 112 (357)
Q Consensus 75 ~DLH~HT~~S-DG~~tp~elv~~A~~~Gl~~iaITDHdt 112 (357)
+|+|+ |.|| ||.+.--|...+|.++|-..|||.-.|.
T Consensus 1 ~~~~~-~~f~p~G~~~Q~eya~~a~~~G~t~igik~~dg 38 (213)
T cd03753 1 YDRGV-NTFSPEGRLFQVEYAIEAIKLGSTAIGIKTKEG 38 (213)
T ss_pred CCCCC-ccCCCCCeEhHHHHHHHHHhcCCCEEEEEeCCE
Confidence 36777 4577 9999999999999999999999988664
No 158
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=29.20 E-value=20 Score=38.11 Aligned_cols=26 Identities=8% Similarity=0.169 Sum_probs=15.3
Q ss_pred HHcCCcEEEEecCCCCCCHHHHHHHH
Q 018376 98 HCNGVKVLALTDHDTMSGIPEAIETA 123 (357)
Q Consensus 98 ~~~Gl~~iaITDHdt~~g~~~~~~~a 123 (357)
.+.|+..+.+|--+...-......++
T Consensus 239 sq~~isfF~~~hs~sYeqaq~~F~~a 264 (665)
T KOG2422|consen 239 SQKGISFFKFEHSNSYEQAQRDFYLA 264 (665)
T ss_pred ccCceeEEEeecchHHHHHHHHHHHH
Confidence 67788888887555444333333333
No 159
>TIGR03128 RuMP_HxlA 3-hexulose-6-phosphate synthase. at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin. In these species, the enzyme is viewed as a lyase rather than a synthase and is called D-arabino 3-hexulose 6-phosphate formaldehyde lyase. Note that there is some overlap in specificity with the Escherichia coli enzyme 3-keto-L-gulonate 6-phosphate decarboxylase.
Probab=29.12 E-value=1.6e+02 Score=26.35 Aligned_cols=43 Identities=16% Similarity=0.359 Sum_probs=29.5
Q ss_pred CHHHH-HHHHHHcCCcEEEEecCCCCCC--HHHHHHHHHhcCCeEEEE
Q 018376 89 SPSKL-VERAHCNGVKVLALTDHDTMSG--IPEAIETARRFGMKIIPG 133 (357)
Q Consensus 89 tp~el-v~~A~~~Gl~~iaITDHdt~~g--~~~~~~~a~~~gi~vi~G 133 (357)
+|... ++++.+.|.+.+.+ |-.... ..++.+.+++.|+.++++
T Consensus 63 d~~~~~~~~~~~~Gad~i~v--h~~~~~~~~~~~i~~~~~~g~~~~~~ 108 (206)
T TIGR03128 63 DAGEYEAEQAFAAGADIVTV--LGVADDATIKGAVKAAKKHGKEVQVD 108 (206)
T ss_pred cchHHHHHHHHHcCCCEEEE--eccCCHHHHHHHHHHHHHcCCEEEEE
Confidence 44444 89999999998874 222221 367788888898877663
No 160
>PF07894 DUF1669: Protein of unknown function (DUF1669); InterPro: IPR012461 This family is composed of sequences derived from hypothetical eukaryotic proteins of unknown function. Some members of this family are annotated as being potential phospholipases but no literature was found to support this.
Probab=28.85 E-value=3.4e+02 Score=26.44 Aligned_cols=35 Identities=20% Similarity=0.123 Sum_probs=28.2
Q ss_pred ceEEceeeeCcCCCCCCCHHHHHHHHHHcCCcEEEE
Q 018376 72 NVVFELHSHSNFSDGYLSPSKLVERAHCNGVKVLAL 107 (357)
Q Consensus 72 ~~~~DLH~HT~~SDG~~tp~elv~~A~~~Gl~~iaI 107 (357)
.-++.+|+|+.. ||.-+++|++++.++.=-+.|||
T Consensus 118 ~Tr~~vy~qPp~-~~~p~IKE~vR~~I~~A~kVIAI 152 (284)
T PF07894_consen 118 VTRATVYFQPPK-DGQPHIKEVVRRMIQQAQKVIAI 152 (284)
T ss_pred CceEEEEeCCCC-CCCCCHHHHHHHHHHHhcceeEE
Confidence 468999999977 89889998877777776666765
No 161
>COG2185 Sbm Methylmalonyl-CoA mutase, C-terminal domain/subunit (cobalamin-binding) [Lipid metabolism]
Probab=28.74 E-value=1.4e+02 Score=26.12 Aligned_cols=42 Identities=24% Similarity=0.384 Sum_probs=31.5
Q ss_pred CCCHHHHHHHHHHcCCcEEEEecCCCCC--CHHHHHHHHHhcCC
Q 018376 87 YLSPSKLVERAHCNGVKVLALTDHDTMS--GIPEAIETARRFGM 128 (357)
Q Consensus 87 ~~tp~elv~~A~~~Gl~~iaITDHdt~~--g~~~~~~~a~~~gi 128 (357)
.-||+|++.+|.+...+.|+|+=.+--+ -++.+.+++++.|.
T Consensus 49 ~~tp~e~v~aA~~~dv~vIgvSsl~g~h~~l~~~lve~lre~G~ 92 (143)
T COG2185 49 FQTPEEAVRAAVEEDVDVIGVSSLDGGHLTLVPGLVEALREAGV 92 (143)
T ss_pred cCCHHHHHHHHHhcCCCEEEEEeccchHHHHHHHHHHHHHHhCC
Confidence 4699999999999999999997544322 24566777777664
No 162
>TIGR02313 HpaI-NOT-DapA 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase. This model represents a subset of the DapA (dihydrodipicolinate synthase) family which has apparently evolved a separate function. The product of DapA, dihydrodipicolinate, results from the non-enzymatic cyclization and dehydration of 6-amino-2,4-dihydroxyhept-2-ene-1,7-dioic acid, which is different from the substrate of this reaction only in the presence of the amino group. In the absence of this amino group, and running the reaction in the opposite direction, the reaction corresponds to the HpaI aldolase component of the 4-hydroxyphenylacetic acid catabolism pathway (see TIGR02311). At present, this variant of DapA is found only in Oceanobacillus iheyensis HTE831 and Thermus thermophilus HB27. In both of these cases, one or more other DapA genes can be found and the one identified by this model is part of an operon for 4-hydroxyphenylacetic acid catabolism.
Probab=28.58 E-value=2.8e+02 Score=26.70 Aligned_cols=56 Identities=16% Similarity=0.121 Sum_probs=38.1
Q ss_pred cCCeEEeeCCCCCCC--hHHHHHHHHHcCCcEEEeecCCC-c--HHH--HHHHHHHHhc-CCce
Q 018376 263 TGGLAVLAHPWALKN--PAAIIRKLKDVGLHGLEVYRSDG-K--LVD--VNFLEKIDNF-LLLL 318 (357)
Q Consensus 263 aGGvaVLAHP~~~~~--~~~li~~l~~~GlDGIEv~~~~~-~--~~~--~~~~~lA~~~-~Ll~ 318 (357)
.|.++|++|-+.... .-++.+...+.|.||+=+..|+. . .+. .++..+|+.- ++.+
T Consensus 67 ~g~~pvi~gv~~~~t~~ai~~a~~A~~~Gad~v~v~pP~y~~~~~~~l~~~f~~ia~a~~~lpv 130 (294)
T TIGR02313 67 AGRIPFAPGTGALNHDETLELTKFAEEAGADAAMVIVPYYNKPNQEALYDHFAEVADAVPDFPI 130 (294)
T ss_pred CCCCcEEEECCcchHHHHHHHHHHHHHcCCCEEEEcCccCCCCCHHHHHHHHHHHHHhccCCCE
Confidence 566899999875332 23455667888999999988864 2 222 4677888876 5654
No 163
>PRK08203 hydroxydechloroatrazine ethylaminohydrolase; Reviewed
Probab=28.26 E-value=1.6e+02 Score=29.92 Aligned_cols=62 Identities=21% Similarity=0.346 Sum_probs=39.3
Q ss_pred eEEceeeeCcCC--CCC---------------------CCHHHH-------HHHHHHcCCcEEEEecCCCC------CCH
Q 018376 73 VVFELHSHSNFS--DGY---------------------LSPSKL-------VERAHCNGVKVLALTDHDTM------SGI 116 (357)
Q Consensus 73 ~~~DLH~HT~~S--DG~---------------------~tp~el-------v~~A~~~Gl~~iaITDHdt~------~g~ 116 (357)
-+||.|+|...+ -|. ++|+++ +.++.+.|...+. ||... .++
T Consensus 60 GlVn~H~H~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~e~l~~G~Ttv~--d~~~~~~~~~~~~~ 137 (451)
T PRK08203 60 GLVNTHHHFYQTLTRALPAAQDAELFPWLTTLYPVWARLTPEMVRVATQTALAELLLSGCTTSS--DHHYLFPNGLRDAL 137 (451)
T ss_pred ceEeccccccchhcccccccCCCcHHHHHHHHhHHHHhCCHHHHHHHHHHHHHHHHhcCcCEEE--cceeeccccccchH
Confidence 599999999765 222 234443 2334567877665 65322 225
Q ss_pred HHHHHHHHhcCCeEEEEEEE
Q 018376 117 PEAIETARRFGMKIIPGVEI 136 (357)
Q Consensus 117 ~~~~~~a~~~gi~vi~GiEi 136 (357)
..+.+.+.+.|++++.+...
T Consensus 138 ~~~~~a~~~~G~R~~~~~~~ 157 (451)
T PRK08203 138 DDQIEAAREIGMRFHATRGS 157 (451)
T ss_pred HHHHHHHHHcCCeEEEecce
Confidence 66677788899998877544
No 164
>TIGR03564 F420_MSMEG_4879 F420-dependent oxidoreductase, MSMEG_4879 family. Coenzyme F420 is produced by methanogenic archaea, a number of the Actinomycetes (including Mycobacterium tuberculosis), and rare members of other lineages. The resulting information-rich phylogenetic profile identifies candidate F420-dependent oxidoreductases within the family of luciferase-like enzymes (pfam00296), where the species range for the subfamily encompasses many F420-positive genomes without straying beyond. This family is uncharacterized, and named for member MSMEG_4879 from Mycobacterium smegmatis.
Probab=28.15 E-value=1.2e+02 Score=28.47 Aligned_cols=46 Identities=15% Similarity=0.096 Sum_probs=34.0
Q ss_pred HHHHHHHHcCCcEEEEecCCCCCCHHHHHHHHHh-cCCeEEEEEEEE
Q 018376 92 KLVERAHCNGVKVLALTDHDTMSGIPEAIETARR-FGMKIIPGVEIS 137 (357)
Q Consensus 92 elv~~A~~~Gl~~iaITDHdt~~g~~~~~~~a~~-~gi~vi~GiEis 137 (357)
++++.|.+.|++.+.+.||.....+.-+..++.. ..|++-+|+=+.
T Consensus 3 ~~a~~aE~~Gfd~~w~~eh~~~~~~~~la~~A~~T~ri~lgt~v~~~ 49 (265)
T TIGR03564 3 ADARRAAAAGLDSAWLGQVYGYDALTALALVGRAVPGIELGTAVVPT 49 (265)
T ss_pred HHHHHHHHCCCCEEEecCcCCCCHHHHHHHHHhhCCCceeeeeeccC
Confidence 5788999999999999999877665544444443 457777776654
No 165
>PRK08898 coproporphyrinogen III oxidase; Provisional
Probab=28.11 E-value=1.3e+02 Score=30.31 Aligned_cols=55 Identities=13% Similarity=0.289 Sum_probs=36.9
Q ss_pred HhhCCCCcccCCCCCCHHHHHHHHHHc------CCeEEeeCCCCCCChHHHHHHHHHcCCcEEEe
Q 018376 237 YLYDGGPAYSTGSEPLAEVAVQLIHRT------GGLAVLAHPWALKNPAAIIRKLKDVGLHGLEV 295 (357)
Q Consensus 237 yl~~~~~~yv~~~~~~~eevI~~I~~a------GGvaVLAHP~~~~~~~~li~~l~~~GlDGIEv 295 (357)
||+.|.|...+.. .+.++++.|++. --+.+-++|.... .+.+..|+++|++-|.+
T Consensus 78 y~GGGTPs~L~~~--~L~~ll~~i~~~~~~~~~~eit~E~~p~~~~--~e~L~~l~~~Gvnrisi 138 (394)
T PRK08898 78 FIGGGTPSLLSAA--GLDRLLSDVRALLPLDPDAEITLEANPGTFE--AEKFAQFRASGVNRLSI 138 (394)
T ss_pred EECCCCcCCCCHH--HHHHHHHHHHHhCCCCCCCeEEEEECCCCCC--HHHHHHHHHcCCCeEEE
Confidence 5666666555322 246777777653 2488899998654 46789999999984443
No 166
>PRK00311 panB 3-methyl-2-oxobutanoate hydroxymethyltransferase; Reviewed
Probab=27.95 E-value=3.2e+02 Score=26.16 Aligned_cols=71 Identities=14% Similarity=0.158 Sum_probs=47.5
Q ss_pred HHHHHHHHHHcCCeEEeeCCCCC----------C----C---hHHHHH---HHHHcCCcEEEeecCCCcHHHHHHHHHHH
Q 018376 253 AEVAVQLIHRTGGLAVLAHPWAL----------K----N---PAAIIR---KLKDVGLHGLEVYRSDGKLVDVNFLEKID 312 (357)
Q Consensus 253 ~eevI~~I~~aGGvaVLAHP~~~----------~----~---~~~li~---~l~~~GlDGIEv~~~~~~~~~~~~~~lA~ 312 (357)
..+.|+++.++ |++|.+|-+.. + . .+++++ .+.++|.|+|.+-... .+ ....+++
T Consensus 119 ~~~~I~al~~a-gIpV~gHiGL~pq~~~~~gg~~i~grt~~~a~~~i~ra~a~~eAGA~~i~lE~v~--~~--~~~~i~~ 193 (264)
T PRK00311 119 VAETIKRLVER-GIPVMGHLGLTPQSVNVLGGYKVQGRDEEAAEKLLEDAKALEEAGAFALVLECVP--AE--LAKEITE 193 (264)
T ss_pred HHHHHHHHHHC-CCCEeeeecccceeecccCCeeeecCCHHHHHHHHHHHHHHHHCCCCEEEEcCCC--HH--HHHHHHH
Confidence 45678888766 79999997621 0 0 123443 4578899999886652 23 3778889
Q ss_pred hcCCceeecccccCCCC
Q 018376 313 NFLLLLCLRQISNCDCA 329 (357)
Q Consensus 313 ~~~Ll~t~~~~~GSD~h 329 (357)
+..+...+|.- |.+|.
T Consensus 194 ~l~iP~igiGa-G~~~d 209 (264)
T PRK00311 194 ALSIPTIGIGA-GPDCD 209 (264)
T ss_pred hCCCCEEEecc-CCCCC
Confidence 99888776433 56776
No 167
>COG1082 IolE Sugar phosphate isomerases/epimerases [Carbohydrate transport and metabolism]
Probab=27.88 E-value=1e+02 Score=28.49 Aligned_cols=44 Identities=18% Similarity=0.115 Sum_probs=25.6
Q ss_pred CCHHHHHHHHHHcC--CeEEeeCCCCCCC---hHHHHHHHHHcCCcEEE
Q 018376 251 PLAEVAVQLIHRTG--GLAVLAHPWALKN---PAAIIRKLKDVGLHGLE 294 (357)
Q Consensus 251 ~~~eevI~~I~~aG--GvaVLAHP~~~~~---~~~li~~l~~~GlDGIE 294 (357)
.+.+++++.+.++| |+-+..++..... ..++.+.+...|+.-..
T Consensus 15 ~~l~~~l~~~~~~G~~gvEi~~~~~~~~~~~~~~~l~~~l~~~gl~i~~ 63 (274)
T COG1082 15 LPLEEILRKAAELGFDGVELSPGDLFPADYKELAELKELLADYGLEITS 63 (274)
T ss_pred CCHHHHHHHHHHhCCCeEecCCcccCCchhhhHHHHHHHHHHcCcEEEe
Confidence 45667777777777 6666653322221 35555666666766554
No 168
>PLN02746 hydroxymethylglutaryl-CoA lyase
Probab=27.72 E-value=5.7e+02 Score=25.50 Aligned_cols=62 Identities=15% Similarity=0.160 Sum_probs=41.2
Q ss_pred CHHHHHHHHHHcCCe--EEeeCCCCCCChHHHHHHHHHcCCcEEEeecCCC----------cHHH-----HHHHHHHHhc
Q 018376 252 LAEVAVQLIHRTGGL--AVLAHPWALKNPAAIIRKLKDVGLHGLEVYRSDG----------KLVD-----VNFLEKIDNF 314 (357)
Q Consensus 252 ~~eevI~~I~~aGGv--aVLAHP~~~~~~~~li~~l~~~GlDGIEv~~~~~----------~~~~-----~~~~~lA~~~ 314 (357)
+.+|+++.|....+. .+++ | + ..-++...++|+|.|-++-|-. +.++ ....++|+++
T Consensus 101 d~~ev~~~i~~~~~~~~~~l~-~----n-~~die~A~~~g~~~v~i~~s~Sd~h~~~n~~~t~~e~l~~~~~~v~~Ak~~ 174 (347)
T PLN02746 101 DAKDVMAAVRNLEGARFPVLT-P----N-LKGFEAAIAAGAKEVAVFASASESFSKSNINCSIEESLVRYREVALAAKKH 174 (347)
T ss_pred cHHHHHHHHHhccCCceeEEc-C----C-HHHHHHHHHcCcCEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHc
Confidence 567788888875554 3343 1 2 3457778899999999985421 1111 2578999999
Q ss_pred CCcee
Q 018376 315 LLLLC 319 (357)
Q Consensus 315 ~Ll~t 319 (357)
|+.+.
T Consensus 175 Gl~v~ 179 (347)
T PLN02746 175 SIPVR 179 (347)
T ss_pred CCeEE
Confidence 98773
No 169
>cd00408 DHDPS-like Dihydrodipicolinate synthase family. A member of the class I aldolases, which use an active-site lysine which stablilzes a reaction intermediate via Schiff base formation, and have TIM beta/alpha barrel fold. The dihydrodipicolinate synthase family comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways and includes such proteins as N-acetylneuraminate lyase, MosA protein, 5-keto-4-deoxy-glucarate dehydratase, trans-o-hydroxybenzylidenepyruvate hydratase-aldolase, trans-2'-carboxybenzalpyruvate hydratase-aldolase, and 2-keto-3-deoxy- gluconate aldolase. The family is also referred to as the N-acetylneuraminate lyase (NAL) family.
Probab=27.65 E-value=2.2e+02 Score=26.81 Aligned_cols=55 Identities=20% Similarity=0.167 Sum_probs=37.1
Q ss_pred CCeEEeeCCCCCCC--hHHHHHHHHHcCCcEEEeecCCCc---HHH--HHHHHHHHhcCCce
Q 018376 264 GGLAVLAHPWALKN--PAAIIRKLKDVGLHGLEVYRSDGK---LVD--VNFLEKIDNFLLLL 318 (357)
Q Consensus 264 GGvaVLAHP~~~~~--~~~li~~l~~~GlDGIEv~~~~~~---~~~--~~~~~lA~~~~Ll~ 318 (357)
|.++|++|-+.... ..++...+.+.|.||+-+..|+.. .+. .++.++|+.-++..
T Consensus 65 ~~~~vi~gv~~~~~~~~i~~a~~a~~~Gad~v~v~pP~y~~~~~~~~~~~~~~ia~~~~~pi 126 (281)
T cd00408 65 GRVPVIAGVGANSTREAIELARHAEEAGADGVLVVPPYYNKPSQEGIVAHFKAVADASDLPV 126 (281)
T ss_pred CCCeEEEecCCccHHHHHHHHHHHHHcCCCEEEECCCcCCCCCHHHHHHHHHHHHhcCCCCE
Confidence 35889998765332 234556678889999999887642 222 46778888766654
No 170
>PRK05473 hypothetical protein; Provisional
Probab=27.61 E-value=92 Score=24.81 Aligned_cols=40 Identities=33% Similarity=0.423 Sum_probs=25.6
Q ss_pred HHHHHHHcCccccHHHHHHHHhhCCCCcccCCCCCCHHHHHHHHHH
Q 018376 217 VARAMVEAGHVENLKQAFARYLYDGGPAYSTGSEPLAEVAVQLIHR 262 (357)
Q Consensus 217 ia~aLv~~g~~~~~~~~f~~yl~~~~~~yv~~~~~~~eevI~~I~~ 262 (357)
+..+|.++||-.- ...-.||-.|.|+|++. -.++-.+|++
T Consensus 27 Vy~AL~EKGYNPi--nQiVGYllSGDPaYIts----h~nAR~lIrk 66 (86)
T PRK05473 27 VYDALEEKGYNPI--NQIVGYLLSGDPAYIPR----HNDARNLIRK 66 (86)
T ss_pred HHHHHHHcCCChH--HHHHhhhccCCCCccCC----cccHHHHHHH
Confidence 4567888887543 22336888899999974 3345555544
No 171
>COG3473 Maleate cis-trans isomerase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=27.03 E-value=1.5e+02 Score=27.77 Aligned_cols=59 Identities=17% Similarity=0.201 Sum_probs=34.1
Q ss_pred HHHHHHHHHcCCeEEeeCCCCCCChHHHHHHHHHcCCcEEEeecCCCcHHHHHHHHHHHhcCCce
Q 018376 254 EVAVQLIHRTGGLAVLAHPWALKNPAAIIRKLKDVGLHGLEVYRSDGKLVDVNFLEKIDNFLLLL 318 (357)
Q Consensus 254 eevI~~I~~aGGvaVLAHP~~~~~~~~li~~l~~~GlDGIEv~~~~~~~~~~~~~~lA~~~~Ll~ 318 (357)
+|+.+.|.+++|++|..-+. ..++.|..+|..-|-+..||-....+.-.+|-..+|+=+
T Consensus 88 ~ei~~~ie~~~~v~vvTts~------Avv~aL~al~a~ri~vlTPY~~evn~~e~ef~~~~Gfei 146 (238)
T COG3473 88 KEIAQRIEEAKGVPVVTTST------AVVEALNALGAQRISVLTPYIDEVNQREIEFLEANGFEI 146 (238)
T ss_pred HHHHHHHHhccCCceeechH------HHHHHHHhhCcceEEEeccchhhhhhHHHHHHHhCCeEE
Confidence 35666667777776666442 356666666666666666664333334455555555543
No 172
>PRK09249 coproporphyrinogen III oxidase; Provisional
Probab=27.02 E-value=1.9e+02 Score=29.58 Aligned_cols=42 Identities=14% Similarity=0.327 Sum_probs=25.1
Q ss_pred CHHHHHHHHHHcC------CeEEeeCCCCCCChHHHHHHHHHcCCcEEEe
Q 018376 252 LAEVAVQLIHRTG------GLAVLAHPWALKNPAAIIRKLKDVGLHGLEV 295 (357)
Q Consensus 252 ~~eevI~~I~~aG------GvaVLAHP~~~~~~~~li~~l~~~GlDGIEv 295 (357)
.++++++.|++.- -+.+-++|.... .+.+..|+++|+..|.+
T Consensus 120 ~l~~ll~~l~~~~~~~~~~e~tie~np~~lt--~e~l~~l~~aG~~risi 167 (453)
T PRK09249 120 QLRRLMALLREHFNFAPDAEISIEIDPRELD--LEMLDALRELGFNRLSL 167 (453)
T ss_pred HHHHHHHHHHHhCCCCCCCEEEEEecCCcCC--HHHHHHHHHcCCCEEEE
Confidence 3456666665541 245667775432 45677777777776655
No 173
>TIGR03234 OH-pyruv-isom hydroxypyruvate isomerase. This enzyme interconverts tartronate semi-aldehyde (TSA, aka 2-hydroxy 3-oxopropionate) and hydroxypyruvate. The E. coli enzyme has been characterized and found to be specific for TSA, contain no cofactors, and have a rather high Km for hydroxypyruvate of 12.5 mM. The gene is ofter found in association with glyoxalate carboligase (which produces TSA), but has been shown to have no effect on growth on glyoxalate when knocked out. This is consistent with the fact that the gene for tartronate semialdehyde reductase (glxR) is also associated and may have primary responsibility for the catabolism of TSA.
Probab=26.74 E-value=1.7e+02 Score=26.88 Aligned_cols=44 Identities=9% Similarity=-0.102 Sum_probs=34.4
Q ss_pred CCCHHHHHHHHHHcCCcEEEEecCCCCCCHHHHHHHHHhcCCeEE
Q 018376 87 YLSPSKLVERAHCNGVKVLALTDHDTMSGIPEAIETARRFGMKII 131 (357)
Q Consensus 87 ~~tp~elv~~A~~~Gl~~iaITDHdt~~g~~~~~~~a~~~gi~vi 131 (357)
.++.++.++.+++.|++.|-+.. ..-....++.+.+++.|+.+.
T Consensus 13 ~~~l~e~~~~~~e~G~~~vEl~~-~~~~~~~~l~~~l~~~gl~v~ 56 (254)
T TIGR03234 13 ELPFLERFAAAAQAGFTGVEYLF-PYDWDAEALKARLAAAGLEQV 56 (254)
T ss_pred CCCHHHHHHHHHHcCCCEEEecC-CccCCHHHHHHHHHHcCCeEE
Confidence 47899999999999999999953 112246777888888988853
No 174
>cd05008 SIS_GlmS_GlmD_1 SIS (Sugar ISomerase) domain repeat 1 found in Glucosamine 6-phosphate synthase (GlmS) and Glucosamine-6-phosphate deaminase (GlmD). The SIS domain is found in many phosphosugar isomerases and phosphosugar binding proteins. GlmS contains a N-terminal glutaminase domain and two C-terminal SIS domains and catalyzes the first step in hexosamine metabolism, converting fructose 6-phosphate into glucosamine 6-phosphate using glutamine as nitrogen source. The glutaminase domain hydrolyzes glutamine to glutamate and ammonia. Ammonia is transferred through a channel to the isomerase domain for glucosamine 6-phosphate synthesis. The end product of the pathway is N-acetylglucosamine, which plays multiple roles in eukaryotic cells including being a building block of bacterial and fungal cell walls. In the absence of glutamine, GlmS catalyzes the isomerization of fructose 6-phosphate into glucose 6- phosphate (PGI-like activity). Glucosamine-6-phosphate deaminase (GlmD) cont
Probab=26.63 E-value=76 Score=25.70 Aligned_cols=30 Identities=20% Similarity=0.125 Sum_probs=23.3
Q ss_pred cCCCCCCCHHHHHHHHHHcCCcEEEEecCC
Q 018376 82 NFSDGYLSPSKLVERAHCNGVKVLALTDHD 111 (357)
Q Consensus 82 ~~SDG~~tp~elv~~A~~~Gl~~iaITDHd 111 (357)
.+|-.+-..-+.++.|+++|.+.++||+..
T Consensus 54 S~sG~t~e~~~~~~~a~~~g~~vi~iT~~~ 83 (126)
T cd05008 54 SQSGETADTLAALRLAKEKGAKTVAITNVV 83 (126)
T ss_pred eCCcCCHHHHHHHHHHHHcCCeEEEEECCC
Confidence 344334456788999999999999999963
No 175
>cd00950 DHDPS Dihydrodipicolinate synthase (DHDPS) is a key enzyme in lysine biosynthesis. It catalyzes the aldol condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a Schiff base formation between pyruvate and a lysine residue. The functional enzyme is a homotetramer consisting of a dimer of dimers. DHDPS is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways.
Probab=26.54 E-value=2.2e+02 Score=26.87 Aligned_cols=56 Identities=14% Similarity=0.111 Sum_probs=35.6
Q ss_pred CCeEEeeCCCCCC--ChHHHHHHHHHcCCcEEEeecCCC-c--HHH--HHHHHHHHhcCCcee
Q 018376 264 GGLAVLAHPWALK--NPAAIIRKLKDVGLHGLEVYRSDG-K--LVD--VNFLEKIDNFLLLLC 319 (357)
Q Consensus 264 GGvaVLAHP~~~~--~~~~li~~l~~~GlDGIEv~~~~~-~--~~~--~~~~~lA~~~~Ll~t 319 (357)
|.++|+++-+... ...++.+.+.+.|.|||-+..|+. . .+. .++.++|+.-++...
T Consensus 68 ~~~~vi~gv~~~~~~~~~~~a~~a~~~G~d~v~~~~P~~~~~~~~~l~~~~~~ia~~~~~pi~ 130 (284)
T cd00950 68 GRVPVIAGTGSNNTAEAIELTKRAEKAGADAALVVTPYYNKPSQEGLYAHFKAIAEATDLPVI 130 (284)
T ss_pred CCCcEEeccCCccHHHHHHHHHHHHHcCCCEEEEcccccCCCCHHHHHHHHHHHHhcCCCCEE
Confidence 4578888876432 224455667788888888887753 2 222 467778887665543
No 176
>PRK09722 allulose-6-phosphate 3-epimerase; Provisional
Probab=26.30 E-value=4.2e+02 Score=24.77 Aligned_cols=63 Identities=11% Similarity=0.134 Sum_probs=41.6
Q ss_pred HHHHHHHHHHcCCeEEeeCCCCC-CChHHHHHHHHHcCCcEEEeecCCCcHHHHHHHHHHHhcCCc
Q 018376 253 AEVAVQLIHRTGGLAVLAHPWAL-KNPAAIIRKLKDVGLHGLEVYRSDGKLVDVNFLEKIDNFLLL 317 (357)
Q Consensus 253 ~eevI~~I~~aGGvaVLAHP~~~-~~~~~li~~l~~~GlDGIEv~~~~~~~~~~~~~~lA~~~~Ll 317 (357)
++.-|+..-++|.-.|.-|.... ..+..++..+++.|+..-=+.+|.-+.+. +..+....+++
T Consensus 71 P~~~i~~~~~aGad~it~H~Ea~~~~~~~~i~~Ik~~G~kaGlalnP~T~~~~--l~~~l~~vD~V 134 (229)
T PRK09722 71 PQDYIDQLADAGADFITLHPETINGQAFRLIDEIRRAGMKVGLVLNPETPVES--IKYYIHLLDKI 134 (229)
T ss_pred HHHHHHHHHHcCCCEEEECccCCcchHHHHHHHHHHcCCCEEEEeCCCCCHHH--HHHHHHhcCEE
Confidence 56677777778877888887643 24556777778888776666666554444 55566666644
No 177
>PRK07379 coproporphyrinogen III oxidase; Provisional
Probab=26.25 E-value=2.2e+02 Score=28.76 Aligned_cols=77 Identities=9% Similarity=0.237 Sum_probs=45.9
Q ss_pred HhhCCCCcccCCCCCCHHHHHHHHHHc------CCeEEeeCCCCCCChHHHHHHHHHcCCcEEEe----ecC--------
Q 018376 237 YLYDGGPAYSTGSEPLAEVAVQLIHRT------GGLAVLAHPWALKNPAAIIRKLKDVGLHGLEV----YRS-------- 298 (357)
Q Consensus 237 yl~~~~~~yv~~~~~~~eevI~~I~~a------GGvaVLAHP~~~~~~~~li~~l~~~GlDGIEv----~~~-------- 298 (357)
||+.|.|...+. ..++++++.|++. .-+.+=++|.... .+.++.|+++|+.-|.+ +++
T Consensus 71 y~GGGTps~l~~--~~l~~ll~~i~~~~~~~~~~eit~E~~P~~lt--~e~l~~l~~~GvnrislGvQS~~d~~L~~l~R 146 (400)
T PRK07379 71 FFGGGTPSLLSV--EQLERILTTLDQRFGIAPDAEISLEIDPGTFD--LEQLQGYRSLGVNRVSLGVQAFQDELLALCGR 146 (400)
T ss_pred EECCCccccCCH--HHHHHHHHHHHHhCCCCCCCEEEEEeCCCcCC--HHHHHHHHHCCCCEEEEEcccCCHHHHHHhCC
Confidence 455555544422 2356777777764 2466678887543 46788888999875555 332
Q ss_pred CCcHHH-HHHHHHHHhcCCc
Q 018376 299 DGKLVD-VNFLEKIDNFLLL 317 (357)
Q Consensus 299 ~~~~~~-~~~~~lA~~~~Ll 317 (357)
.++.++ ....+.+++.|+-
T Consensus 147 ~~~~~~~~~ai~~l~~~G~~ 166 (400)
T PRK07379 147 SHRVKDIFAAVDLIHQAGIE 166 (400)
T ss_pred CCCHHHHHHHHHHHHHcCCC
Confidence 122222 3466778888876
No 178
>COG0159 TrpA Tryptophan synthase alpha chain [Amino acid transport and metabolism]
Probab=26.18 E-value=1.3e+02 Score=29.06 Aligned_cols=50 Identities=26% Similarity=0.262 Sum_probs=35.4
Q ss_pred CCHHHHHHHHHHcCCcEEEEecCCCCCCHHHHHHHHHhcCCeEEEEEEEEe
Q 018376 88 LSPSKLVERAHCNGVKVLALTDHDTMSGIPEAIETARRFGMKIIPGVEIST 138 (357)
Q Consensus 88 ~tp~elv~~A~~~Gl~~iaITDHdt~~g~~~~~~~a~~~gi~vi~GiEis~ 138 (357)
.-.+..+++|++.|++++-|-|= -..-..++.+.|+++||.+|+=+--++
T Consensus 109 ~Gie~F~~~~~~~GvdGlivpDL-P~ee~~~~~~~~~~~gi~~I~lvaPtt 158 (265)
T COG0159 109 YGIEKFLRRAKEAGVDGLLVPDL-PPEESDELLKAAEKHGIDPIFLVAPTT 158 (265)
T ss_pred hhHHHHHHHHHHcCCCEEEeCCC-ChHHHHHHHHHHHHcCCcEEEEeCCCC
Confidence 45677899999999999999883 222234567777888888776544443
No 179
>cd00443 ADA_AMPD Adenosine/AMP deaminase. Adenosine deaminases (ADAs) are present in pro- and eukaryotic organisms and catalyze the zinc dependent irreversible deamination of adenosine nucleosides to inosine nucleosides and ammonia. The eukaryotic AMP deaminase catalyzes a similar reaction leading to the hydrolytic removal of an amino group at the 6 position of the adenine nucleotide ring, a branch point in the adenylate catabolic pathway.
Probab=26.17 E-value=57 Score=31.57 Aligned_cols=23 Identities=39% Similarity=0.570 Sum_probs=21.1
Q ss_pred EEceeeeCcCCCCCCCHHHHHHHHHH
Q 018376 74 VFELHSHSNFSDGYLSPSKLVERAHC 99 (357)
Q Consensus 74 ~~DLH~HT~~SDG~~tp~elv~~A~~ 99 (357)
+++||+|- +|+++|+.+.+.|++
T Consensus 3 K~eLH~Hl---~Gsi~~~~l~~l~~~ 25 (305)
T cd00443 3 KVELHAHL---SGSISPETLLELIKK 25 (305)
T ss_pred ceeEEecC---cCCCCHHHHHHHHHH
Confidence 78999997 788999999999988
No 180
>PRK12677 xylose isomerase; Provisional
Probab=25.90 E-value=1.4e+02 Score=30.17 Aligned_cols=43 Identities=19% Similarity=0.223 Sum_probs=32.5
Q ss_pred CCCHHHHHHHHHHcCCcEEEEecCCCC-----CC-----HHHHHHHHHhcCCe
Q 018376 87 YLSPSKLVERAHCNGVKVLALTDHDTM-----SG-----IPEAIETARRFGMK 129 (357)
Q Consensus 87 ~~tp~elv~~A~~~Gl~~iaITDHdt~-----~g-----~~~~~~~a~~~gi~ 129 (357)
.+++++.++++.+.|+++|.+.+-+.. .. +.++.+++++.|+.
T Consensus 30 ~~~~~E~v~~~a~~Gf~gVElh~~~l~p~~~~~~~~~~~~~~lk~~l~~~GL~ 82 (384)
T PRK12677 30 PLDPVEAVHKLAELGAYGVTFHDDDLVPFGATDAERDRIIKRFKKALDETGLV 82 (384)
T ss_pred CCCHHHHHHHHHHhCCCEEEecccccCCCCCChhhhHHHHHHHHHHHHHcCCe
Confidence 479999999999999999999753322 11 45666777778876
No 181
>PF00290 Trp_syntA: Tryptophan synthase alpha chain; InterPro: IPR002028 Tryptophan synthase (4.2.1.20 from EC) catalyzes the last step in the biosynthesis of tryptophan [, ]: L-serine + 1-(indol-3-yl)glycerol 3-phosphate = L-tryptophan + glyceraldehyde 3-phosphate + H2O It has two functional domains, each found in bacteria and plants on a separate subunit. In Escherichia coli, the 2 subunits, A and B, are encoded by the trpA and trpB genes respectively. The alpha chain is for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate and the beta chain IPR006653 from INTERPRO is for the synthesis of tryptophan from indole and serine. In fungi the two domains are fused together in a single multifunctional protein, in the order: (NH2-A-B-COOH) [, ]. The two domains of the Neurospora crassa polypeptide are linked by a connector of 54-amino acid residues that has less than 25% identity to the 45-residue connector of the Saccharomyces cerevisiae (Baker's yeast) polypeptide. Two acidic residues are believed to serve as proton donors/acceptors in the enzyme's catalytic mechanism.; GO: 0004834 tryptophan synthase activity, 0006568 tryptophan metabolic process; PDB: 1TJR_B 1RD5_B 1K8X_A 1QOQ_A 1KFE_A 1KFB_A 2CLO_A 1TTP_A 2RH9_A 1K7F_A ....
Probab=25.78 E-value=93 Score=29.77 Aligned_cols=43 Identities=26% Similarity=0.392 Sum_probs=31.1
Q ss_pred CHHHHHHHHHHcCCcEEEEecCCCCCCHHHHHHHHHhcCCeEEE
Q 018376 89 SPSKLVERAHCNGVKVLALTDHDTMSGIPEAIETARRFGMKIIP 132 (357)
Q Consensus 89 tp~elv~~A~~~Gl~~iaITDHdt~~g~~~~~~~a~~~gi~vi~ 132 (357)
-.+.+++.|++.|++++-|-|=- +.-..++.+.|++.|+.+|+
T Consensus 103 G~e~F~~~~~~aGvdGlIipDLP-~ee~~~~~~~~~~~gl~~I~ 145 (259)
T PF00290_consen 103 GIERFFKEAKEAGVDGLIIPDLP-PEESEELREAAKKHGLDLIP 145 (259)
T ss_dssp -HHHHHHHHHHHTEEEEEETTSB-GGGHHHHHHHHHHTT-EEEE
T ss_pred chHHHHHHHHHcCCCEEEEcCCC-hHHHHHHHHHHHHcCCeEEE
Confidence 57889999999999999998842 33446677778888877654
No 182
>PRK15052 D-tagatose-1,6-bisphosphate aldolase subunit GatZ; Provisional
Probab=25.63 E-value=7.5e+02 Score=25.48 Aligned_cols=47 Identities=17% Similarity=0.029 Sum_probs=37.2
Q ss_pred CHHHHHHHHHHcCCeEEeeCCCCCCChHHHHHHHHHcCCcEEEeecCCC
Q 018376 252 LAEVAVQLIHRTGGLAVLAHPWALKNPAAIIRKLKDVGLHGLEVYRSDG 300 (357)
Q Consensus 252 ~~eevI~~I~~aGGvaVLAHP~~~~~~~~li~~l~~~GlDGIEv~~~~~ 300 (357)
.+.+..+.|+. -|+.+=||-..|..+ ..+.++...|+-.+-|=....
T Consensus 239 ~A~~Ls~~~~~-~~lvfEaHSTDYQt~-~al~~lv~dgfaiLKVGPalT 285 (421)
T PRK15052 239 EAQALSAWIEN-TPMVYEAHSTDYQTR-QAYRELVRDHFAILKVGPALT 285 (421)
T ss_pred HHHHHHHHhcC-CCEEEeecCcccCCH-HHHHHHHhcCceeeeechhHh
Confidence 46788888988 889999998877654 457778899998888876544
No 183
>TIGR01178 ade adenine deaminase. The family described by this model includes an experimentally characterized adenine deaminase of Bacillus subtilis. It also include a member from Methanobacterium thermoautotrophicum, in which adenine deaminase activity has been detected.
Probab=25.51 E-value=92 Score=33.06 Aligned_cols=61 Identities=20% Similarity=0.280 Sum_probs=40.6
Q ss_pred eEEceeeeCcCCCCCCCHHHHHHHHHHcCCcEEEEecCC--CCCC---HHHHHHHHHhcCCeEEEEEE
Q 018376 73 VVFELHSHSNFSDGYLSPSKLVERAHCNGVKVLALTDHD--TMSG---IPEAIETARRFGMKIIPGVE 135 (357)
Q Consensus 73 ~~~DLH~HT~~SDG~~tp~elv~~A~~~Gl~~iaITDHd--t~~g---~~~~~~~a~~~gi~vi~GiE 135 (357)
-.+|.|+|...|- .+|+++.+.+...|...+..--|. .+.| +..+.+.+++..+.++.++-
T Consensus 51 G~ID~H~Hi~~~~--~~~~~~~~~al~~GvTtvv~~P~~~~~v~g~~~~~~~~~~a~~~~~d~~~~~~ 116 (552)
T TIGR01178 51 GFIDAHIHIESSM--LTPSEFAKLVLPHGVTTVVSDPHEIANVNGEDGINFMLNNAKKTPLNFYFMLP 116 (552)
T ss_pred CeEecccccCCCC--CChhHHHHHHHCCCEEEEEcCCCCCCCCCCHHHHHHHHHHhhcCCcEEEEECC
Confidence 6899999986552 368888888999999887764454 2223 44555555555666554443
No 184
>PRK09856 fructoselysine 3-epimerase; Provisional
Probab=25.45 E-value=1.5e+02 Score=27.59 Aligned_cols=45 Identities=22% Similarity=0.274 Sum_probs=33.6
Q ss_pred CCCHHHHHHHHHHcCCcEEEEec---CC---CC--CCHHHHHHHHHhcCCeEE
Q 018376 87 YLSPSKLVERAHCNGVKVLALTD---HD---TM--SGIPEAIETARRFGMKII 131 (357)
Q Consensus 87 ~~tp~elv~~A~~~Gl~~iaITD---Hd---t~--~g~~~~~~~a~~~gi~vi 131 (357)
..++++.++.+++.|++.|-+.- |. .. ....++.+++++.|+.+.
T Consensus 12 ~~~l~~~l~~~~~~G~~~vEl~~~~~~~~~~~~~~~~~~~l~~~~~~~gl~v~ 64 (275)
T PRK09856 12 RLPIEHAFRDASELGYDGIEIWGGRPHAFAPDLKAGGIKQIKALAQTYQMPII 64 (275)
T ss_pred eCCHHHHHHHHHHcCCCEEEEccCCccccccccCchHHHHHHHHHHHcCCeEE
Confidence 46899999999999999999852 21 11 235667778888998763
No 185
>PRK06582 coproporphyrinogen III oxidase; Provisional
Probab=25.43 E-value=2.1e+02 Score=28.81 Aligned_cols=55 Identities=13% Similarity=0.310 Sum_probs=37.4
Q ss_pred HhhCCCCcccCCCCCCHHHHHHHHHHcC------CeEEeeCCCCCCChHHHHHHHHHcCCcEEEe
Q 018376 237 YLYDGGPAYSTGSEPLAEVAVQLIHRTG------GLAVLAHPWALKNPAAIIRKLKDVGLHGLEV 295 (357)
Q Consensus 237 yl~~~~~~yv~~~~~~~eevI~~I~~aG------GvaVLAHP~~~~~~~~li~~l~~~GlDGIEv 295 (357)
||+.|.|.+.+.. .++++++.|++.. .+.+=++|.... .+.+..|+++|++-|.+
T Consensus 67 y~GGGTPs~l~~~--~l~~ll~~i~~~~~~~~~~eitiE~nP~~~~--~e~l~~l~~~GvnRiSi 127 (390)
T PRK06582 67 FFGGGTPSLMNPV--IVEGIINKISNLAIIDNQTEITLETNPTSFE--TEKFKAFKLAGINRVSI 127 (390)
T ss_pred EECCCccccCCHH--HHHHHHHHHHHhCCCCCCCEEEEEeCCCcCC--HHHHHHHHHCCCCEEEE
Confidence 5666656544321 2456778887743 588899997654 46789999999986655
No 186
>PF09508 Lact_bio_phlase: Lacto-N-biose phosphorylase; InterPro: IPR012711 The gene which codes for this protein in gut-bacteria is located in a novel putative operon for galactose metabolism. The protein appears to be a carbohydrate-processing phosphorolytic enzyme (2.4.1.211 from EC), unlike either glycoside hydrolases or glycoside lyase. Intestinal colonisation by Bifidobacteria is important for human health, especially in paediatrics, because colonisation seems to prevent infection by some pathogenic bacteria that cause diarrhoea or other illnesses. The operon seems to be involved in intestinal colonisation by Bifidobacteria mediated by metabolism of mucin sugars. In addition, it may also resolve the question of the nature of the bifidus factor in human milk as the lacto-N-biose structure found in milk oligosaccharides. ; GO: 0016758 transferase activity, transferring hexosyl groups; PDB: 2ZUW_A 2ZUU_C 2ZUT_D 2ZUV_A 2ZUS_B.
Probab=25.36 E-value=81 Score=34.16 Aligned_cols=41 Identities=22% Similarity=0.420 Sum_probs=21.2
Q ss_pred CHHHHHHHHHHcCCeEEe--eCCCCCCChHHHHHHHHHcCCcEEE
Q 018376 252 LAEVAVQLIHRTGGLAVL--AHPWALKNPAAIIRKLKDVGLHGLE 294 (357)
Q Consensus 252 ~~eevI~~I~~aGGvaVL--AHP~~~~~~~~li~~l~~~GlDGIE 294 (357)
.+.+.|+++|++|=-|.. ---|--. ++.-+.+++.|||||=
T Consensus 288 ~akelVDivH~~GKeAmMFlGD~WIGt--EPyg~~F~~iGlDaVV 330 (716)
T PF09508_consen 288 FAKELVDIVHEYGKEAMMFLGDHWIGT--EPYGKYFKSIGLDAVV 330 (716)
T ss_dssp HHHHHHHHHHHTT-EEEEESSSSBTTT---TTSTTGGGG---EEE
T ss_pred HHHHHHHHHHhcCCeEEEecCCceeec--ccchhhhhhcCcceEe
Confidence 368999999999966554 3222101 2233445566666653
No 187
>TIGR00676 fadh2 5,10-methylenetetrahydrofolate reductase, prokaryotic form. This protein is an FAD-containing flavoprotein.
Probab=25.33 E-value=5.9e+02 Score=24.13 Aligned_cols=68 Identities=19% Similarity=0.052 Sum_probs=37.6
Q ss_pred CCCCHHHHHHHHHHcCC---eEEeeCCCCC---CChHHHHHHH---HHcCCcEEEeecCCCcHHHHHHHHHHHhcCC
Q 018376 249 SEPLAEVAVQLIHRTGG---LAVLAHPWAL---KNPAAIIRKL---KDVGLHGLEVYRSDGKLVDVNFLEKIDNFLL 316 (357)
Q Consensus 249 ~~~~~eevI~~I~~aGG---vaVLAHP~~~---~~~~~li~~l---~~~GlDGIEv~~~~~~~~~~~~~~lA~~~~L 316 (357)
.+.+..+.|++|++..| +.+.+||... .+.+..+..| .++|-|.+=.=.-++......+.+.|++.|+
T Consensus 108 ~f~~a~~Li~~i~~~~~~f~ig~a~~Peghp~~~~~~~~~~~L~~K~~aGA~f~iTQ~~fd~~~~~~~~~~~~~~gi 184 (272)
T TIGR00676 108 GFNYASELVEFIRNEFGDFDIGVAAYPEKHPEAPNLEEDIENLKRKVDAGADYAITQLFFDNDDYYRFVDRCRAAGI 184 (272)
T ss_pred CCCCHHHHHHHHHHhcCCeeEEEEeCCCCCCCCCCHHHHHHHHHHHHHcCCCeEeeccccCHHHHHHHHHHHHHcCC
Confidence 34567889999988644 3467777531 1222333333 3678774433222333333457778888753
No 188
>TIGR00433 bioB biotin synthetase. Catalyzes the last step of the biotin biosynthesis pathway.
Probab=25.32 E-value=3.2e+02 Score=25.73 Aligned_cols=36 Identities=33% Similarity=0.418 Sum_probs=20.9
Q ss_pred HHHHHHHHHcCCeEEeeCCCCCCChHHHHHHHHHcCCcE
Q 018376 254 EVAVQLIHRTGGLAVLAHPWALKNPAAIIRKLKDVGLHG 292 (357)
Q Consensus 254 eevI~~I~~aGGvaVLAHP~~~~~~~~li~~l~~~GlDG 292 (357)
+++.+.+++. |+.+.++++... .+.++.|+++|++.
T Consensus 101 ~~i~~~~~~~-~i~~~~~~g~~~--~e~l~~Lk~aG~~~ 136 (296)
T TIGR00433 101 EAMVQIVEEM-GLKTCATLGLLD--PEQAKRLKDAGLDY 136 (296)
T ss_pred HHHHHHHHhC-CCeEEecCCCCC--HHHHHHHHHcCCCE
Confidence 3444444444 466666665322 45677777777776
No 189
>cd01310 TatD_DNAse TatD like proteins; E.coli TatD is a cytoplasmic protein, shown to have magnesium dependent DNase activity.
Probab=25.28 E-value=2.5e+02 Score=25.26 Aligned_cols=47 Identities=19% Similarity=0.159 Sum_probs=27.3
Q ss_pred EceeeeCcCCCCCCCHHHHHHHHHHcCCcEEEEecCCCCCCHHHHHHHHHhcCCeE
Q 018376 75 FELHSHSNFSDGYLSPSKLVERAHCNGVKVLALTDHDTMSGIPEAIETARRFGMKI 130 (357)
Q Consensus 75 ~DLH~HT~~SDG~~tp~elv~~A~~~Gl~~iaITDHdt~~g~~~~~~~a~~~gi~v 130 (357)
+.+||+.. +.++++.+++.+.....|..|.+ .+...+.++++ .|+.+
T Consensus 124 v~iH~~~~-------~~~~~~l~~~~~~~~~~i~H~~~-~~~~~~~~~~~-~g~~~ 170 (251)
T cd01310 124 VVIHSRDA-------HEDVLEILKEYGPPKRGVFHCFS-GSAEEAKELLD-LGFYI 170 (251)
T ss_pred eEEEeeCc-------hHHHHHHHHhcCCCCCEEEEccC-CCHHHHHHHHH-cCCEE
Confidence 67777742 78899999998833344444433 33444444443 45443
No 190
>cd03749 proteasome_alpha_type_1 proteasome_alpha_type_1. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=25.20 E-value=61 Score=29.52 Aligned_cols=36 Identities=17% Similarity=0.231 Sum_probs=30.2
Q ss_pred ceeeeCcCC-CCCCCHHHHHHHHHHcCCcEEEEecCCC
Q 018376 76 ELHSHSNFS-DGYLSPSKLVERAHCNGVKVLALTDHDT 112 (357)
Q Consensus 76 DLH~HT~~S-DG~~tp~elv~~A~~~Gl~~iaITDHdt 112 (357)
|+|+ |.|| ||.+---|...+|..+|-..|||.=-|.
T Consensus 2 d~~~-t~fsp~Grl~Qveya~~av~~G~t~IgIk~~dg 38 (211)
T cd03749 2 DTDV-TTWSPQGRLFQVEYAMEAVKQGSATVGLKSKTH 38 (211)
T ss_pred CCCC-ceECCCCeEeHHHHHHHHHhcCCCEEEEEeCCE
Confidence 4455 5687 9999999999999999999999976654
No 191
>PRK00115 hemE uroporphyrinogen decarboxylase; Validated
Probab=25.18 E-value=2.8e+02 Score=27.16 Aligned_cols=45 Identities=11% Similarity=0.215 Sum_probs=34.3
Q ss_pred CCHHHHHHHHHHcC-CeEEeeCCCCCCChHHHHHHHHHcCCcEEEeecC
Q 018376 251 PLAEVAVQLIHRTG-GLAVLAHPWALKNPAAIIRKLKDVGLHGLEVYRS 298 (357)
Q Consensus 251 ~~~eevI~~I~~aG-GvaVLAHP~~~~~~~~li~~l~~~GlDGIEv~~~ 298 (357)
|...++++.|++.| ++.|+-|.+. ...+++.+++.|+|++-+-+.
T Consensus 224 P~~k~i~~~i~~~~~~~~ilh~cg~---~~~~~~~~~~~~~~~is~d~~ 269 (346)
T PRK00115 224 PYMKRIVAELKREHPDVPVILFGKG---AGELLEAMAETGADVVGLDWT 269 (346)
T ss_pred HHHHHHHHHHHHhCCCCCEEEEcCC---cHHHHHHHHhcCCCEEeeCCC
Confidence 55688999999998 7888866553 234678889999999877553
No 192
>PRK00748 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Validated
Probab=25.17 E-value=3.5e+02 Score=24.49 Aligned_cols=51 Identities=20% Similarity=0.204 Sum_probs=37.4
Q ss_pred CCHHHHHHHHHHcCCcEEEEecCCCC-CC----HHHHHHHHHhcCCeEEEEEEEEe
Q 018376 88 LSPSKLVERAHCNGVKVLALTDHDTM-SG----IPEAIETARRFGMKIIPGVEIST 138 (357)
Q Consensus 88 ~tp~elv~~A~~~Gl~~iaITDHdt~-~g----~~~~~~~a~~~gi~vi~GiEis~ 138 (357)
.+|.++++...+.|++.+-++|=|.. .| .....+.++..++.++.|--|+.
T Consensus 30 ~~~~~~a~~~~~~g~~~i~v~dld~~~~g~~~~~~~i~~i~~~~~~pv~~~GGI~~ 85 (233)
T PRK00748 30 DDPVAQAKAWEDQGAKWLHLVDLDGAKAGKPVNLELIEAIVKAVDIPVQVGGGIRS 85 (233)
T ss_pred CCHHHHHHHHHHcCCCEEEEEeCCccccCCcccHHHHHHHHHHCCCCEEEcCCcCC
Confidence 58999999999999999999998765 34 33344455556667776666554
No 193
>PF14871 GHL6: Hypothetical glycosyl hydrolase 6
Probab=24.84 E-value=1.3e+02 Score=25.60 Aligned_cols=50 Identities=16% Similarity=0.278 Sum_probs=38.8
Q ss_pred CHHHHHHHHHHcCCcEEEE--ecCCCCC----------------CHHHHHHHHHhcCCeEEEEEEEEe
Q 018376 89 SPSKLVERAHCNGVKVLAL--TDHDTMS----------------GIPEAIETARRFGMKIIPGVEIST 138 (357)
Q Consensus 89 tp~elv~~A~~~Gl~~iaI--TDHdt~~----------------g~~~~~~~a~~~gi~vi~GiEis~ 138 (357)
+|+++++..++.|++.+.| -+|+.+. -+.++.++|++.||+++.=+-++.
T Consensus 1 D~~~~~~~lk~~~v~si~i~a~~h~g~ayYPt~~~~~hp~L~~Dllge~v~a~h~~Girv~ay~~~~~ 68 (132)
T PF14871_consen 1 DPEQFVDTLKEAHVNSITIFAKCHGGYAYYPTKVGPRHPGLKRDLLGEQVEACHERGIRVPAYFDFSW 68 (132)
T ss_pred CHHHHHHHHHHhCCCEEEEEcccccEEEEccCCCCcCCCCCCcCHHHHHHHHHHHCCCEEEEEEeeec
Confidence 4889999999999999999 5665432 146778889999999887776663
No 194
>PRK08208 coproporphyrinogen III oxidase; Validated
Probab=24.57 E-value=2.4e+02 Score=28.67 Aligned_cols=64 Identities=22% Similarity=0.209 Sum_probs=38.9
Q ss_pred HHHHHHHHHHcCC-------eEEeeCCCCCCChHHHHHHHHHcCCcEEEe----ecC--------CCcHHH-HHHHHHHH
Q 018376 253 AEVAVQLIHRTGG-------LAVLAHPWALKNPAAIIRKLKDVGLHGLEV----YRS--------DGKLVD-VNFLEKID 312 (357)
Q Consensus 253 ~eevI~~I~~aGG-------vaVLAHP~~~~~~~~li~~l~~~GlDGIEv----~~~--------~~~~~~-~~~~~lA~ 312 (357)
+++++++|++.-+ +.+-++|.... .+.+..|+++|+.-|++ +++ .++.++ ....+.++
T Consensus 110 l~~Ll~~i~~~~~~~~~~~eitiE~~P~~lt--~e~l~~l~~~G~~rvslGvQS~~~~~L~~l~R~~~~~~~~~ai~~l~ 187 (430)
T PRK08208 110 LEKLFDSVERVLGVDLGNIPKSVETSPATTT--AEKLALLAARGVNRLSIGVQSFHDSELHALHRPQKRADVHQALEWIR 187 (430)
T ss_pred HHHHHHHHHHhCCCCCCCceEEEEeCcCcCC--HHHHHHHHHcCCCEEEEecccCCHHHHHHhCCCCCHHHHHHHHHHHH
Confidence 3567777765432 45668886543 56788888889876655 321 111122 35677888
Q ss_pred hcCCce
Q 018376 313 NFLLLL 318 (357)
Q Consensus 313 ~~~Ll~ 318 (357)
+.|+..
T Consensus 188 ~~g~~~ 193 (430)
T PRK08208 188 AAGFPI 193 (430)
T ss_pred HcCCCe
Confidence 888753
No 195
>PRK05660 HemN family oxidoreductase; Provisional
Probab=24.55 E-value=2.1e+02 Score=28.55 Aligned_cols=77 Identities=10% Similarity=0.095 Sum_probs=47.4
Q ss_pred HhhCCCCcccCCCCCCHHHHHHHHHHc----C--CeEEeeCCCCCCChHHHHHHHHHcCCcEEEeec-CCC---------
Q 018376 237 YLYDGGPAYSTGSEPLAEVAVQLIHRT----G--GLAVLAHPWALKNPAAIIRKLKDVGLHGLEVYR-SDG--------- 300 (357)
Q Consensus 237 yl~~~~~~yv~~~~~~~eevI~~I~~a----G--GvaVLAHP~~~~~~~~li~~l~~~GlDGIEv~~-~~~--------- 300 (357)
|++.|.|...+. ..++++++.|++. . -+.+-++|.... .+.+..|+++|++-|.+-= +..
T Consensus 63 ~~GGGtPs~l~~--~~l~~ll~~l~~~~~~~~~~eit~e~np~~l~--~e~l~~Lk~~Gv~risiGvqS~~~~~L~~l~r 138 (378)
T PRK05660 63 FIGGGTPSLFSA--EAIQRLLDGVRARLPFAPDAEITMEANPGTVE--ADRFVGYQRAGVNRISIGVQSFSEEKLKRLGR 138 (378)
T ss_pred EeCCCccccCCH--HHHHHHHHHHHHhCCCCCCcEEEEEeCcCcCC--HHHHHHHHHcCCCEEEeccCcCCHHHHHHhCC
Confidence 556565554432 2356777777762 2 467788887644 4678889999988776632 211
Q ss_pred --cHHH-HHHHHHHHhcCCc
Q 018376 301 --KLVD-VNFLEKIDNFLLL 317 (357)
Q Consensus 301 --~~~~-~~~~~lA~~~~Ll 317 (357)
+.++ ....+.+++.|+-
T Consensus 139 ~~~~~~~~~ai~~~~~~G~~ 158 (378)
T PRK05660 139 IHGPDEAKRAAKLAQGLGLR 158 (378)
T ss_pred CCCHHHHHHHHHHHHHcCCC
Confidence 1222 2467788888874
No 196
>TIGR01464 hemE uroporphyrinogen decarboxylase. This model represents uroporphyrinogen decarboxylase (HemE), which converts uroporphyrinogen III to coproporphyrinogen III. This step takes the pathway toward protoporphyrin IX, a common precursor of both heme and chlorophyll, rather than toward precorrin 2 and its products.
Probab=24.51 E-value=2.3e+02 Score=27.56 Aligned_cols=45 Identities=9% Similarity=0.217 Sum_probs=34.2
Q ss_pred CCHHHHHHHHHHc-CCeEEeeCCCCCCChHHHHHHHHHcCCcEEEeecC
Q 018376 251 PLAEVAVQLIHRT-GGLAVLAHPWALKNPAAIIRKLKDVGLHGLEVYRS 298 (357)
Q Consensus 251 ~~~eevI~~I~~a-GGvaVLAHP~~~~~~~~li~~l~~~GlDGIEv~~~ 298 (357)
|...++++.|++. |+++|+=|.+. ...+++.+++.|+|++-+-+.
T Consensus 218 p~~k~i~~~i~~~~~~~~ilh~cg~---~~~~~~~~~~~~~~~~s~d~~ 263 (338)
T TIGR01464 218 PYLKKIIEEVKARLPNVPVILFAKG---AGHLLEELAETGADVVGLDWT 263 (338)
T ss_pred HHHHHHHHHHHHhCCCCCEEEEeCC---cHHHHHHHHhcCCCEEEeCCC
Confidence 5568899999987 78877766553 235788899999999977553
No 197
>PF07905 PucR: Purine catabolism regulatory protein-like family; InterPro: IPR012914 This domain is found in the purine catabolism regulatory protein expressed by Bacillus subtilis (PucR, O32138 from SWISSPROT). PucR is thought to be a transcriptional regulator of genes involved in the purine degradation pathway, and may contain a LysR-like DNA-binding domain. It is similar to LysR-type regulators in that it represses its own expression []. The other members of this family are also putative regulatory proteins.
Probab=24.49 E-value=1.9e+02 Score=23.97 Aligned_cols=43 Identities=21% Similarity=0.332 Sum_probs=33.4
Q ss_pred CHHHHHHHHHHcCCcEEEEecCCCCCCH-HHHHHHHHhcCCeEE
Q 018376 89 SPSKLVERAHCNGVKVLALTDHDTMSGI-PEAIETARRFGMKII 131 (357)
Q Consensus 89 tp~elv~~A~~~Gl~~iaITDHdt~~g~-~~~~~~a~~~gi~vi 131 (357)
...++++...+.|..+++|--...+..+ .++.++|.+.++.+|
T Consensus 60 ~~~~~i~~L~~~~~agL~i~~~~~~~~iP~~~i~~A~~~~lPli 103 (123)
T PF07905_consen 60 ELREFIRELAEKGAAGLGIKTGRYLDEIPEEIIELADELGLPLI 103 (123)
T ss_pred HHHHHHHHHHHCCCeEEEEeccCccccCCHHHHHHHHHcCCCEE
Confidence 5788999999999999999544444444 567888999887664
No 198
>TIGR01975 isoAsp_dipep isoaspartyl dipeptidase IadA. The L-isoaspartyl derivative of Asp arises non-enzymatically over time as a form of protein damage. In this isomerization, the connectivity of the polypeptide changes to pass through the beta-carboxyl of the side chain. Much but not all of this damage can be repaired by protein-L-isoaspartate (D-aspartate) O-methyltransferase. This model describes the isoaspartyl dipeptidase IadA, apparently one of two such enzymes in E. coli, an enzyme that degrades isoaspartyl dipeptides and may unblock degradation of proteins that cannot be repaired. This model also describes closely related proteins from other species (e.g. Clostridium perfringens, Thermoanaerobacter tengcongensis) that we assume to be equivalent in function. This family shows homology to dihydroorotases.
Probab=24.48 E-value=7.3e+02 Score=24.95 Aligned_cols=60 Identities=13% Similarity=0.081 Sum_probs=37.9
Q ss_pred eEEceeeeCcCC---CCC--CCHHHHHHHHHHcCCcEEEEecCCCCCC-------HHHHHHHHHhcCCeEEEEE
Q 018376 73 VVFELHSHSNFS---DGY--LSPSKLVERAHCNGVKVLALTDHDTMSG-------IPEAIETARRFGMKIIPGV 134 (357)
Q Consensus 73 ~~~DLH~HT~~S---DG~--~tp~elv~~A~~~Gl~~iaITDHdt~~g-------~~~~~~~a~~~gi~vi~Gi 134 (357)
-.+|.|+|.... ++. .+|+--+..+.+.|+..+. |.-...+ .....+.....||..+.+.
T Consensus 57 GlID~HvH~~~gg~~~~~~~~~~e~~~~e~l~~GvTTv~--d~~g~~~~~~~~~~~~a~~~al~~~Gir~~~~~ 128 (389)
T TIGR01975 57 GFIDQHVHIIGGGGEGGPTTRTPELTLSDITKGGVTTVV--GLLGTDGITRHMESLLAKARALEEEGISCYMLT 128 (389)
T ss_pred CEeehhhccccccccCCCccCCHHHHHHHHHhCCcEEEe--cCcccCccccChhhHHHHHHHHHHhCCEEEEEc
Confidence 689999998753 444 6788777888999998876 4322211 1122334455777655543
No 199
>PLN02417 dihydrodipicolinate synthase
Probab=24.43 E-value=3.1e+02 Score=26.09 Aligned_cols=51 Identities=16% Similarity=0.095 Sum_probs=32.8
Q ss_pred cCCeEEeeCCCCCCC--hHHHHHHHHHcCCcEEEeecCCC-c--HHH--HHHHHHHHh
Q 018376 263 TGGLAVLAHPWALKN--PAAIIRKLKDVGLHGLEVYRSDG-K--LVD--VNFLEKIDN 313 (357)
Q Consensus 263 aGGvaVLAHP~~~~~--~~~li~~l~~~GlDGIEv~~~~~-~--~~~--~~~~~lA~~ 313 (357)
.|.++|+++-+.... .-++.+.+.+.|.||+-+..|+. . .+. +++.++|+.
T Consensus 68 ~~~~pvi~gv~~~~t~~~i~~a~~a~~~Gadav~~~~P~y~~~~~~~i~~~f~~va~~ 125 (280)
T PLN02417 68 GGKIKVIGNTGSNSTREAIHATEQGFAVGMHAALHINPYYGKTSQEGLIKHFETVLDM 125 (280)
T ss_pred CCCCcEEEECCCccHHHHHHHHHHHHHcCCCEEEEcCCccCCCCHHHHHHHHHHHHhh
Confidence 355889998875332 23455566788999999988754 2 222 356677764
No 200
>PRK09997 hydroxypyruvate isomerase; Provisional
Probab=24.02 E-value=2.1e+02 Score=26.46 Aligned_cols=45 Identities=13% Similarity=-0.018 Sum_probs=35.7
Q ss_pred CCCCHHHHHHHHHHcCCcEEEEecCCCCCCHHHHHHHHHhcCCeEE
Q 018376 86 GYLSPSKLVERAHCNGVKVLALTDHDTMSGIPEAIETARRFGMKII 131 (357)
Q Consensus 86 G~~tp~elv~~A~~~Gl~~iaITDHdt~~g~~~~~~~a~~~gi~vi 131 (357)
..++.++.++++++.|++.|-|... ......++.+++++.|+.+.
T Consensus 13 ~~~~l~~~l~~~a~~Gf~~VEl~~~-~~~~~~~~~~~l~~~gl~~~ 57 (258)
T PRK09997 13 GEYDFLARFEKAAQCGFRGVEFMFP-YDYDIEELKQVLASNKLEHT 57 (258)
T ss_pred cCCCHHHHHHHHHHhCCCEEEEcCC-CCCCHHHHHHHHHHcCCcEE
Confidence 4568999999999999999998642 22356788888889998863
No 201
>cd02067 B12-binding B12 binding domain (B12-BD). This domain binds different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide, it is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins.
Probab=23.93 E-value=2.7e+02 Score=22.40 Aligned_cols=29 Identities=17% Similarity=0.146 Sum_probs=24.2
Q ss_pred CCCCCCCHHHHHHHHHHcCCcEEEEecCC
Q 018376 83 FSDGYLSPSKLVERAHCNGVKVLALTDHD 111 (357)
Q Consensus 83 ~SDG~~tp~elv~~A~~~Gl~~iaITDHd 111 (357)
+.....+++++++.+.+...+.++|+=.+
T Consensus 32 ~lg~~~~~~~l~~~~~~~~pdvV~iS~~~ 60 (119)
T cd02067 32 DLGVDVPPEEIVEAAKEEDADAIGLSGLL 60 (119)
T ss_pred ECCCCCCHHHHHHHHHHcCCCEEEEeccc
Confidence 33456899999999999999999998653
No 202
>PF04309 G3P_antiterm: Glycerol-3-phosphate responsive antiterminator; InterPro: IPR006699 Glycerol enters bacterial cells via facilitated diffusion, an energy-independent transport process catalysed by the glycerol transport facilitator GlpF, an integral membrane protein of the aquaporin family. Intracellular glycerol is usually converted to glycerol-3-P in an ATP-requiring phosphorylation reaction catalysed by glycerol kinase (GlpK). Glycerol-3-P, the inducer of the glpFK operon, is not a substrate for GlpF and hence remains entrapped in the cell where it is metabolized further. In some bacterial species, for example Bacillus firmus, glycerol-3-P activates the antiterminator GlpP []. In B. subtilis, glpF and glpK are organised in an operon followed by the glycerol-3-P dehydrogenase-encoding glpD gene and preceded by glpP coding for an antiterminator regulating the expression of glpFK, glpD and glpTQ. Their induction requires the inducer glycerol-3-P, which activates the antiterminator GlpP by allowing it to bind to the leader region of glpD and presumably also of glpFK and glpTQ mRNAs.; GO: 0006355 regulation of transcription, DNA-dependent, 0009607 response to biotic stimulus; PDB: 1VKF_A 3KTS_G.
Probab=23.93 E-value=3.5e+02 Score=24.37 Aligned_cols=68 Identities=25% Similarity=0.260 Sum_probs=46.5
Q ss_pred CCCCCHHHHHHHHHHcCCeEEeeCCCC---CCChHHHHHHHHHcC-CcEEEeecCCCcHHHHHHHHHHHhcCCceeeccc
Q 018376 248 GSEPLAEVAVQLIHRTGGLAVLAHPWA---LKNPAAIIRKLKDVG-LHGLEVYRSDGKLVDVNFLEKIDNFLLLLCLRQI 323 (357)
Q Consensus 248 ~~~~~~eevI~~I~~aGGvaVLAHP~~---~~~~~~li~~l~~~G-lDGIEv~~~~~~~~~~~~~~lA~~~~Ll~t~~~~ 323 (357)
++-.++.+.++.+|++|=. |.-|-.. ......-++.|++.+ .|||=--.+ ...+.|++.||+...|.+
T Consensus 28 g~I~~l~~~v~~~~~~gK~-vfVHiDli~Gl~~D~~~i~~L~~~~~~dGIISTk~-------~~i~~Ak~~gl~tIqRiF 99 (175)
T PF04309_consen 28 GDIGNLKDIVKRLKAAGKK-VFVHIDLIEGLSRDEAGIEYLKEYGKPDGIISTKS-------NLIKRAKKLGLLTIQRIF 99 (175)
T ss_dssp EECCCHHHHHHHHHHTT-E-EEEECCGEETB-SSHHHHHHHHHTT--SEEEESSH-------HHHHHHHHTT-EEEEEEE
T ss_pred CcHHHHHHHHHHHHHcCCE-EEEEehhcCCCCCCHHHHHHHHHcCCCcEEEeCCH-------HHHHHHHHcCCEEEEEee
Confidence 3456789999999998865 5556542 233466789999988 999865443 378999999999765443
No 203
>PRK12677 xylose isomerase; Provisional
Probab=23.89 E-value=1.5e+02 Score=29.89 Aligned_cols=42 Identities=19% Similarity=0.295 Sum_probs=24.6
Q ss_pred HHHHHHHHHcCCcEEEeecC----CCcH------HHHHHHHHHHhcCCceee
Q 018376 279 AAIIRKLKDVGLHGLEVYRS----DGKL------VDVNFLEKIDNFLLLLCL 320 (357)
Q Consensus 279 ~~li~~l~~~GlDGIEv~~~----~~~~------~~~~~~~lA~~~~Ll~t~ 320 (357)
.+.+..+++.|++|||++.. .... ....+.++++++||-++.
T Consensus 34 ~E~v~~~a~~Gf~gVElh~~~l~p~~~~~~~~~~~~~~lk~~l~~~GL~v~~ 85 (384)
T PRK12677 34 VEAVHKLAELGAYGVTFHDDDLVPFGATDAERDRIIKRFKKALDETGLVVPM 85 (384)
T ss_pred HHHHHHHHHhCCCEEEecccccCCCCCChhhhHHHHHHHHHHHHHcCCeeEE
Confidence 55666677777777777632 1110 113467777777777553
No 204
>PRK08207 coproporphyrinogen III oxidase; Provisional
Probab=23.88 E-value=2.2e+02 Score=29.75 Aligned_cols=77 Identities=17% Similarity=0.185 Sum_probs=44.5
Q ss_pred HhhCCCCcccCCCCCCHHHHHHHHHHcC----C---eEEee-CCCCCCChHHHHHHHHHcCCcEEEeecCC---------
Q 018376 237 YLYDGGPAYSTGSEPLAEVAVQLIHRTG----G---LAVLA-HPWALKNPAAIIRKLKDVGLHGLEVYRSD--------- 299 (357)
Q Consensus 237 yl~~~~~~yv~~~~~~~eevI~~I~~aG----G---vaVLA-HP~~~~~~~~li~~l~~~GlDGIEv~~~~--------- 299 (357)
||+.|.|...+. ..++++++.|+..- + +.|-+ +|.... .+.++.|+++|++-|.+---.
T Consensus 223 yfGGGTPt~L~~--~~L~~Ll~~i~~~f~~~~~~~EiTvE~grPd~it--~e~L~~Lk~~Gv~RISIGvQS~~d~vLk~i 298 (488)
T PRK08207 223 YFGGGTPTSLTA--EELERLLEEIYENFPDVKNVKEFTVEAGRPDTIT--EEKLEVLKKYGVDRISINPQTMNDETLKAI 298 (488)
T ss_pred EEeCCCccCCCH--HHHHHHHHHHHHhccccCCceEEEEEcCCCCCCC--HHHHHHHHhcCCCeEEEcCCcCCHHHHHHh
Confidence 455555443321 23566777776542 2 23444 776543 567888999998877763321
Q ss_pred ---CcHHH-HHHHHHHHhcCCc
Q 018376 300 ---GKLVD-VNFLEKIDNFLLL 317 (357)
Q Consensus 300 ---~~~~~-~~~~~lA~~~~Ll 317 (357)
++.++ ....+.|++.|+-
T Consensus 299 gR~ht~e~v~~ai~~ar~~Gf~ 320 (488)
T PRK08207 299 GRHHTVEDIIEKFHLAREMGFD 320 (488)
T ss_pred CCCCCHHHHHHHHHHHHhCCCC
Confidence 22222 3567888898883
No 205
>cd01303 GDEase Guanine deaminase (GDEase). Guanine deaminase is an aminohydrolase responsible for the conversion of guanine to xanthine and ammonia, the first step to utilize guanine as a nitrogen source. This reaction also removes the guanine base from the pool and therefore can play a role in the regulation of cellular GTP and the guanylate nucleotide pool.
Probab=23.83 E-value=2.6e+02 Score=28.21 Aligned_cols=40 Identities=20% Similarity=0.191 Sum_probs=26.8
Q ss_pred HHHHcCCcEEEEecCCCCC--CHHHHHHHHHhcCCeEEEEEEEE
Q 018376 96 RAHCNGVKVLALTDHDTMS--GIPEAIETARRFGMKIIPGVEIS 137 (357)
Q Consensus 96 ~A~~~Gl~~iaITDHdt~~--g~~~~~~~a~~~gi~vi~GiEis 137 (357)
.+.+.|+..++ ||.... ......+++.+.|++.+.|-+..
T Consensus 119 e~l~~GvTtv~--d~~~~~~~~~~~~~~a~~~~G~R~~~~~~~~ 160 (429)
T cd01303 119 ELLRNGTTTAC--YFATIHPESTEALFEEAAKRGQRAIAGKVCM 160 (429)
T ss_pred HHHhCCceEEE--eecccChhHHHHHHHHHHHhCCeEEEeeeee
Confidence 45677887775 765432 34556677778899988876653
No 206
>cd06557 KPHMT-like Ketopantoate hydroxymethyltransferase (KPHMT) is the first enzyme in the pantothenate biosynthesis pathway. Ketopantoate hydroxymethyltransferase (KPHMT) catalyzes the first committed step in the biosynthesis of pantothenate (vitamin B5), which is a precursor to coenzyme A and is required for penicillin biosynthesis.
Probab=23.81 E-value=5.1e+02 Score=24.62 Aligned_cols=71 Identities=14% Similarity=0.149 Sum_probs=47.7
Q ss_pred HHHHHHHHHHcCCeEEeeCCCCC----------C----Ch---HHHHH---HHHHcCCcEEEeecCCCcHHHHHHHHHHH
Q 018376 253 AEVAVQLIHRTGGLAVLAHPWAL----------K----NP---AAIIR---KLKDVGLHGLEVYRSDGKLVDVNFLEKID 312 (357)
Q Consensus 253 ~eevI~~I~~aGGvaVLAHP~~~----------~----~~---~~li~---~l~~~GlDGIEv~~~~~~~~~~~~~~lA~ 312 (357)
..+.|+++.++| ++|.+|-+.. + .. +++++ .+.++|.|+|.+-... .+ ....+++
T Consensus 116 ~~~~I~al~~ag-ipV~gHiGL~pq~~~~~gg~~~~grt~~~a~~~i~ra~a~~~AGA~~i~lE~v~--~~--~~~~i~~ 190 (254)
T cd06557 116 VAETIRALVDAG-IPVMGHIGLTPQSVNQLGGYKVQGKTEEEAERLLEDALALEEAGAFALVLECVP--AE--LAKEITE 190 (254)
T ss_pred HHHHHHHHHHcC-CCeeccccccceeeeccCCceeccCCHHHHHHHHHHHHHHHHCCCCEEEEcCCC--HH--HHHHHHH
Confidence 457788887665 9999997621 1 11 23333 4678899999887652 22 4788999
Q ss_pred hcCCceeecccccCCCC
Q 018376 313 NFLLLLCLRQISNCDCA 329 (357)
Q Consensus 313 ~~~Ll~t~~~~~GSD~h 329 (357)
+..+...+|.- |.+|.
T Consensus 191 ~v~iP~igiGa-G~~~d 206 (254)
T cd06557 191 ALSIPTIGIGA-GPDCD 206 (254)
T ss_pred hCCCCEEEecc-CCCCC
Confidence 99988776543 56776
No 207
>PRK00124 hypothetical protein; Validated
Probab=23.77 E-value=81 Score=27.77 Aligned_cols=23 Identities=17% Similarity=0.273 Sum_probs=18.9
Q ss_pred HHHHHHHHHHcCCcEEEEe--cCCC
Q 018376 90 PSKLVERAHCNGVKVLALT--DHDT 112 (357)
Q Consensus 90 p~elv~~A~~~Gl~~iaIT--DHdt 112 (357)
-+++++.|.+.|++.+.++ +|..
T Consensus 13 k~~i~r~a~r~~i~v~~Vas~n~~~ 37 (151)
T PRK00124 13 KDIIIRVAERHGIPVTLVASFNHFL 37 (151)
T ss_pred HHHHHHHHHHHCCeEEEEEeCCccc
Confidence 4678888999999999999 5543
No 208
>PF02310 B12-binding: B12 binding domain; InterPro: IPR006158 The cobalamin (vitamin B12) binding domain can bind two different forms of the cobalamin cofactor, with cobalt bonded either to a methyl group (methylcobalamin) or to 5'-deoxyadenosine (adenosylcobalamin). Cobalamin-binding domains are mainly found in two families of enzymes present in animals and prokaryotes, which perform distinct kinds of reactions at the cobalt-carbon bond. Enzymes that require methylcobalamin carry out methyl transfer reactions. Enzymes that require adenosylcobalamin catalyse reactions in which the first step is the cleavage of adenosylcobalamin to form cob(II)alamin and the 5'-deoxyadenosyl radical, and thus act as radical generators. In both types of enzymes the B12-binding domain uses a histidine to bind the cobalt atom of cobalamin cofactors. This histidine is embedded in a DXHXXG sequence, the most conserved primary sequence motif of the domain [, , ]. Proteins containing the cobalamin-binding domain include: Animal and prokaryotic methionine synthase (2.1.1.13 from EC), which catalyse the transfer of a methyl group from methyl-cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Animal and prokaryotic methylmalonyl-CoA mutase (5.4.99.2 from EC), which are involved in the degradation of several amino acids, odd-chain fatty acids and cholesterol via propionyl-CoA to the tricarboxylic acid cycle. Prokaryotic lysine 5,6-aminomutase (5.4.3.4 from EC). Prokaryotic glutamate mutase (5.4.99.1 from EC) []. Prokaryotic methyleneglutarate mutase (5.4.99.4 from EC). Prokaryotic isobutyryl-CoA mutase (5.4.99.13 from EC). The core structure of the cobalamin-binding domain is characterised by a five-stranded alpha/beta (Rossmann) fold, which consists of 5 parallel beta-sheets surrounded by 4-5 alpha helices in three layers (alpha/beta/alpha) []. Upon binding cobalamin, important elements of the binding site appear to become structured, including an alpha-helix that forms on one side of the cleft accommodating the nucleotide 'tail' of the cofactor. In cobalamin, the cobalt atom can be either free (dmb-off) or bound to dimethylbenzimidazole (dmb-on) according to the pH. When bound to the cobalamin-binding domain, the dimethylbenzimidazole ligand is replaced by the active histidine (His-on) of the DXHXXG motif. The replacement of dimethylbenzimidazole by histidine allows switching between the catalytic and activation cycles []. In methionine synthase the cobalamin cofactor is sandwiched between the cobalamin-binding domain and an approximately 90 residues N-terminal domain forming a helical bundle comprising two pairs of antiparallel helices []. In methionine synthase, there is a second, adjacent domain involved in cobalamin binding that forms a 4-helical bundle cap (IPR003759 from INTERPRO); in the conversion to the active conformation of this enzyme, the 4-helical cap rotates to allow the cobalamin cofactor to bind the activation domain (IPR004223 from INTERPRO) [].; GO: 0031419 cobalamin binding, 0046872 metal ion binding; PDB: 1Y80_A 3BUL_A 1K7Y_A 1BMT_A 3IV9_A 1K98_A 3IVA_A 3KP1_A 3KOW_A 3KOZ_A ....
Probab=23.75 E-value=1.2e+02 Score=24.40 Aligned_cols=38 Identities=26% Similarity=0.385 Sum_probs=25.1
Q ss_pred CCCCCHHHHHHHHHHcCCcEEEEecCCCCCCHHHHHHHH
Q 018376 85 DGYLSPSKLVERAHCNGVKVLALTDHDTMSGIPEAIETA 123 (357)
Q Consensus 85 DG~~tp~elv~~A~~~Gl~~iaITDHdt~~g~~~~~~~a 123 (357)
|...+++++++.+.+.+.+.++||=+. ...+..+.+.+
T Consensus 35 d~~~~~~~l~~~~~~~~pd~V~iS~~~-~~~~~~~~~l~ 72 (121)
T PF02310_consen 35 DANVPPEELVEALRAERPDVVGISVSM-TPNLPEAKRLA 72 (121)
T ss_dssp ESSB-HHHHHHHHHHTTCSEEEEEESS-STHHHHHHHHH
T ss_pred CCCCCHHHHHHHHhcCCCcEEEEEccC-cCcHHHHHHHH
Confidence 445567999999999999999997542 22234444443
No 209
>COG2100 Predicted Fe-S oxidoreductase [General function prediction only]
Probab=23.72 E-value=1.7e+02 Score=29.35 Aligned_cols=52 Identities=15% Similarity=0.150 Sum_probs=39.7
Q ss_pred CCCCCCHHHHHHHHHHcCCeEEeeCCCCC-CChHHHHHHHHHcCCcEEEeecC
Q 018376 247 TGSEPLAEVAVQLIHRTGGLAVLAHPWAL-KNPAAIIRKLKDVGLHGLEVYRS 298 (357)
Q Consensus 247 ~~~~~~~eevI~~I~~aGGvaVLAHP~~~-~~~~~li~~l~~~GlDGIEv~~~ 298 (357)
|.-+|.+.++|++.+..-|+.+.+=-..- -..++++++|.++|+|-|-+.=.
T Consensus 171 P~lYP~l~~lVqalk~~~~v~vVSmQTng~~L~~~lv~eLeeAGLdRiNlSv~ 223 (414)
T COG2100 171 PLLYPHLVDLVQALKEHKGVEVVSMQTNGVLLSKKLVDELEEAGLDRINLSVD 223 (414)
T ss_pred CccchhHHHHHHHHhcCCCceEEEEeeCceeccHHHHHHHHHhCCceEEeecc
Confidence 34467789999999999999888743221 23478999999999999988543
No 210
>PRK05799 coproporphyrinogen III oxidase; Provisional
Probab=23.69 E-value=2.8e+02 Score=27.38 Aligned_cols=40 Identities=20% Similarity=0.397 Sum_probs=21.8
Q ss_pred HHHHHHHHHcC-----CeEEeeCCCCCCChHHHHHHHHHcCCcEEEe
Q 018376 254 EVAVQLIHRTG-----GLAVLAHPWALKNPAAIIRKLKDVGLHGLEV 295 (357)
Q Consensus 254 eevI~~I~~aG-----GvaVLAHP~~~~~~~~li~~l~~~GlDGIEv 295 (357)
+++.+.|+..+ -+.+-++|.... ++.+..|+++|+.-|.+
T Consensus 71 ~~L~~~i~~~~~~~~~eitie~~p~~~t--~e~l~~l~~~G~~rvsi 115 (374)
T PRK05799 71 EILKETIKKLNKKEDLEFTVEGNPGTFT--EEKLKILKSMGVNRLSI 115 (374)
T ss_pred HHHHHHHHhCCCCCCCEEEEEeCCCcCC--HHHHHHHHHcCCCEEEE
Confidence 34445554433 245567775432 45677777777654443
No 211
>cd04795 SIS SIS domain. SIS (Sugar ISomerase) domains are found in many phosphosugar isomerases and phosphosugar binding proteins. SIS domains are also found in proteins that regulate the expression of genes involved in synthesis of phosphosugars.
Probab=23.69 E-value=87 Score=23.31 Aligned_cols=22 Identities=27% Similarity=0.191 Sum_probs=18.8
Q ss_pred CCCHHHHHHHHHHcCCcEEEEe
Q 018376 87 YLSPSKLVERAHCNGVKVLALT 108 (357)
Q Consensus 87 ~~tp~elv~~A~~~Gl~~iaIT 108 (357)
+-...+++++|+++|.+.++||
T Consensus 60 t~~~~~~~~~a~~~g~~ii~it 81 (87)
T cd04795 60 TEELLAALEIAKELGIPVIAIT 81 (87)
T ss_pred CHHHHHHHHHHHHcCCeEEEEe
Confidence 3446778999999999999999
No 212
>PRK13125 trpA tryptophan synthase subunit alpha; Provisional
Probab=23.62 E-value=3.8e+02 Score=24.97 Aligned_cols=62 Identities=10% Similarity=-0.050 Sum_probs=40.5
Q ss_pred CHHHHHHHHHHcCCeEEeeC--CCC-CCChHHHHHHHHHcCCcEEEeecCCCcHHHHHHHHHHHhcC
Q 018376 252 LAEVAVQLIHRTGGLAVLAH--PWA-LKNPAAIIRKLKDVGLHGLEVYRSDGKLVDVNFLEKIDNFL 315 (357)
Q Consensus 252 ~~eevI~~I~~aGGvaVLAH--P~~-~~~~~~li~~l~~~GlDGIEv~~~~~~~~~~~~~~lA~~~~ 315 (357)
.+++.++...++|.-.|+-| |.. .....+++..+++.|++.+=+.+|.-+.+. +..+++.-.
T Consensus 89 ~~~~~i~~~~~~Gadgvii~dlp~e~~~~~~~~~~~~~~~Gl~~~~~v~p~T~~e~--l~~~~~~~~ 153 (244)
T PRK13125 89 SLDNFLNMARDVGADGVLFPDLLIDYPDDLEKYVEIIKNKGLKPVFFTSPKFPDLL--IHRLSKLSP 153 (244)
T ss_pred CHHHHHHHHHHcCCCEEEECCCCCCcHHHHHHHHHHHHHcCCCEEEEECCCCCHHH--HHHHHHhCC
Confidence 56777888888887777777 321 223456777888888888777777554443 444454444
No 213
>TIGR03572 WbuZ glycosyl amidation-associated protein WbuZ. This clade of sequences is highly similar to the HisF protein, but generally represents the second HisF homolog in the genome where the other is an authentic HisF observed in the context of a complete histidine biosynthesis operon. The similarity between these WbuZ sequences and true HisFs is such that often the closest match by BLAST of a WbuZ is a HisF. Only by making a multiple sequence alignment is the homology relationship among the WbuZ sequences made apparent. WbuZ genes are invariably observed in the presence of a homolog of the HisH protein (designated WbuY) and a proposed N-acetyl sugar amidotransferase designated in WbuX in E. coli, IfnA in P. aeriginosa and PseA in C. jejuni. Similarly, this trio of genes is invariably found in the context of saccharide biosynthesis loci. It has been shown that the WbuYZ homologs are not essential components of the activity expressed by WbuX, leading to the proposal that these to pr
Probab=23.60 E-value=2.5e+02 Score=25.62 Aligned_cols=51 Identities=20% Similarity=0.176 Sum_probs=36.6
Q ss_pred CCHHHHHHHHHHcCCcEEEEecCCCCC-C----HHHHHHHHHhcCCeEEEEEEEEe
Q 018376 88 LSPSKLVERAHCNGVKVLALTDHDTMS-G----IPEAIETARRFGMKIIPGVEIST 138 (357)
Q Consensus 88 ~tp~elv~~A~~~Gl~~iaITDHdt~~-g----~~~~~~~a~~~gi~vi~GiEis~ 138 (357)
.+|.+++++..+.|++.+-+||-+... + .+-+.+.++..++.++.|-.+.+
T Consensus 30 ~dp~~~a~~~~~~g~~~i~i~dl~~~~~~~~~n~~~~~~i~~~~~~pv~~~ggi~~ 85 (232)
T TIGR03572 30 GDPVNAARIYNAKGADELIVLDIDASKRGREPLFELISNLAEECFMPLTVGGGIRS 85 (232)
T ss_pred CCHHHHHHHHHHcCCCEEEEEeCCCcccCCCCCHHHHHHHHHhCCCCEEEECCCCC
Confidence 389999999999999999999999763 2 23344555555666666555443
No 214
>COG3494 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=23.60 E-value=1.5e+02 Score=28.45 Aligned_cols=58 Identities=21% Similarity=0.289 Sum_probs=42.9
Q ss_pred cCCeEE-eeCCCCCC---Ch---HHHHHHHHHcCCcEEEeecCCC-cHHHHHHHHHHHhcCCceee
Q 018376 263 TGGLAV-LAHPWALK---NP---AAIIRKLKDVGLHGLEVYRSDG-KLVDVNFLEKIDNFLLLLCL 320 (357)
Q Consensus 263 aGGvaV-LAHP~~~~---~~---~~li~~l~~~GlDGIEv~~~~~-~~~~~~~~~lA~~~~Ll~t~ 320 (357)
.||+.| +|-|.... .| ...++.++..|+.||=+--..- -.+.....++|.++||++++
T Consensus 210 r~gvLvK~aKp~QD~R~DlPtIG~~Ti~~a~kaGlaGIaieagr~lile~e~~l~~Ank~giFI~g 275 (279)
T COG3494 210 RGGVLVKMAKPQQDERADLPTIGPNTIENAAKAGLAGIAIEAGRVLILEREATLKLANKLGIFIVG 275 (279)
T ss_pred cCCEEEEccCCCccccccCCccCHHHHHHHHHcCccceeeecCcEEEeccHHHHHhHhhCCeEEEe
Confidence 788877 88887422 22 5689999999999997766432 12334589999999999985
No 215
>TIGR03314 Se_ssnA putative selenium metabolism protein SsnA. Members of this protein family are found exclusively in genomes that contain putative set of labile selenium-dependent enzyme accessory proteins as well as homologs of a labile selenium-dependent purine hydroxylase. A mutant in this gene in Escherichia coli had improved stationary phase viability. The function is unknown.
Probab=23.55 E-value=2.2e+02 Score=28.87 Aligned_cols=39 Identities=23% Similarity=0.337 Sum_probs=25.2
Q ss_pred HHHcCCcEEEEecCCCCC----C-HHHHHHHHHhcCCeEEEEEEEE
Q 018376 97 AHCNGVKVLALTDHDTMS----G-IPEAIETARRFGMKIIPGVEIS 137 (357)
Q Consensus 97 A~~~Gl~~iaITDHdt~~----g-~~~~~~~a~~~gi~vi~GiEis 137 (357)
+.+.|... +.||.... + .....+++.+.|++.+.|.++.
T Consensus 116 ~l~~GtTt--~~d~~~~~~~~~~~~~~~~~a~~~~GiR~~~~~~~~ 159 (441)
T TIGR03314 116 AIKSGCTT--VIDHHASPNAITGSLSTIRKAADEAGLRTMLCYETS 159 (441)
T ss_pred HHHcCCeE--EEecccccccccchHHHHHHHHHHhCCeEEEeeeee
Confidence 45667654 55774221 2 3455677788999999987764
No 216
>PRK03170 dihydrodipicolinate synthase; Provisional
Probab=23.53 E-value=3.1e+02 Score=26.05 Aligned_cols=56 Identities=14% Similarity=0.094 Sum_probs=35.5
Q ss_pred cCCeEEeeCCCCCC--ChHHHHHHHHHcCCcEEEeecCCC---cHHH--HHHHHHHHhcCCce
Q 018376 263 TGGLAVLAHPWALK--NPAAIIRKLKDVGLHGLEVYRSDG---KLVD--VNFLEKIDNFLLLL 318 (357)
Q Consensus 263 aGGvaVLAHP~~~~--~~~~li~~l~~~GlDGIEv~~~~~---~~~~--~~~~~lA~~~~Ll~ 318 (357)
.|.++|++|-+... ...++.+.+.+.|.|++=+..|+. +.+. +++.++|+.-++..
T Consensus 68 ~~~~~vi~gv~~~~~~~~i~~a~~a~~~G~d~v~~~pP~~~~~~~~~i~~~~~~ia~~~~~pv 130 (292)
T PRK03170 68 NGRVPVIAGTGSNSTAEAIELTKFAEKAGADGALVVTPYYNKPTQEGLYQHFKAIAEATDLPI 130 (292)
T ss_pred CCCCcEEeecCCchHHHHHHHHHHHHHcCCCEEEECCCcCCCCCHHHHHHHHHHHHhcCCCCE
Confidence 34578888876432 224455667788889888877753 2222 46777887766554
No 217
>TIGR00735 hisF imidazoleglycerol phosphate synthase, cyclase subunit.
Probab=23.50 E-value=2.5e+02 Score=26.27 Aligned_cols=52 Identities=25% Similarity=0.249 Sum_probs=37.7
Q ss_pred CCCHHHHHHHHHHcCCcEEEEecCCCCC-C----HHHHHHHHHhcCCeEEEEEEEEe
Q 018376 87 YLSPSKLVERAHCNGVKVLALTDHDTMS-G----IPEAIETARRFGMKIIPGVEIST 138 (357)
Q Consensus 87 ~~tp~elv~~A~~~Gl~~iaITDHdt~~-g----~~~~~~~a~~~gi~vi~GiEis~ 138 (357)
..+|.++++++.+.|.+.+-++|-+... + +.-..+.++..++.++.|-=|++
T Consensus 29 ~~dp~~~a~~~~~~G~~~l~v~Dl~~~~~~~~~n~~~i~~i~~~~~~pv~~~GGi~s 85 (254)
T TIGR00735 29 AGDPVELAQRYDEEGADELVFLDITASSEGRTTMIDVVERTAETVFIPLTVGGGIKS 85 (254)
T ss_pred CCCHHHHHHHHHHcCCCEEEEEcCCcccccChhhHHHHHHHHHhcCCCEEEECCCCC
Confidence 3589999999999999999999998663 2 12233445556677777665654
No 218
>TIGR03700 mena_SCO4494 putative menaquinone biosynthesis protein, SCO4494 family. Members of this protein family appear to be involved in menaquinone biosynthesis by an alternate pathway via futalosine, based on close phylogenetic correlation with known markers of the futalosine pathway, gene clustering in many organisms, and paralogy with the SCO4550 protein.
Probab=23.41 E-value=2.6e+02 Score=27.63 Aligned_cols=73 Identities=14% Similarity=0.162 Sum_probs=45.9
Q ss_pred HHHHHHHHHHcC-CeEEeeCC-C------C-C-CChHHHHHHHHHcCCc-----EEEeecC--------CC-cHHH-HHH
Q 018376 253 AEVAVQLIHRTG-GLAVLAHP-W------A-L-KNPAAIIRKLKDVGLH-----GLEVYRS--------DG-KLVD-VNF 307 (357)
Q Consensus 253 ~eevI~~I~~aG-GvaVLAHP-~------~-~-~~~~~li~~l~~~GlD-----GIEv~~~--------~~-~~~~-~~~ 307 (357)
+.++++.|++.. .+.+-+-. . . . ...++.+.+|+++|+| |+|.+++ .+ ..+. ...
T Consensus 114 ~~e~i~~Ik~~~p~i~i~~~~~~ei~~~~~~~g~~~~e~l~~LkeAGld~~~~~g~E~~~~~v~~~i~~~~~~~~~~l~~ 193 (351)
T TIGR03700 114 YLDMIRTLKEAYPDLHVKAFTAVEIHHFSKISGLPTEEVLDELKEAGLDSMPGGGAEIFAEEVRQQICPEKISAERWLEI 193 (351)
T ss_pred HHHHHHHHHHHCCCceEEeCCHHHHHHHHHHcCCCHHHHHHHHHHcCCCcCCCCcccccCHHHHhhcCCCCCCHHHHHHH
Confidence 467888898875 56665521 1 0 1 1235678889999975 6888752 12 2222 257
Q ss_pred HHHHHhcCCceeeccccc
Q 018376 308 LEKIDNFLLLLCLRQISN 325 (357)
Q Consensus 308 ~~lA~~~~Ll~t~~~~~G 325 (357)
.+.|++.|+-.+...+.|
T Consensus 194 i~~a~~~Gi~~~sg~i~G 211 (351)
T TIGR03700 194 HRTAHELGLKTNATMLYG 211 (351)
T ss_pred HHHHHHcCCCcceEEEee
Confidence 899999998876544445
No 219
>PRK04302 triosephosphate isomerase; Provisional
Probab=23.32 E-value=3.6e+02 Score=24.65 Aligned_cols=60 Identities=15% Similarity=0.096 Sum_probs=0.0
Q ss_pred HHHHHHcCCeEEeeCCCCC-----CChHHHHHHHHHcCCcEEEeecC---CCcHHHHHHHHHHHhcCC
Q 018376 257 VQLIHRTGGLAVLAHPWAL-----KNPAAIIRKLKDVGLHGLEVYRS---DGKLVDVNFLEKIDNFLL 316 (357)
Q Consensus 257 I~~I~~aGGvaVLAHP~~~-----~~~~~li~~l~~~GlDGIEv~~~---~~~~~~~~~~~lA~~~~L 316 (357)
+..+++.-.++|.|.=... ...+..++.++++|+||+-+-++ ....+...+.+.|+++||
T Consensus 48 l~~v~~~~~i~v~aq~~~~~~~G~~tg~~~~~~l~~~G~~~vii~~ser~~~~~e~~~~v~~a~~~Gl 115 (223)
T PRK04302 48 IRRVAEEVDIPVYAQHVDPVEPGSHTGHILPEAVKDAGAVGTLINHSERRLTLADIEAVVERAKKLGL 115 (223)
T ss_pred HHHHHHhcCCeEEeccCCCCCCCCchhhhHHHHHHHcCCCEEEEeccccccCHHHHHHHHHHHHHCCC
No 220
>cd00954 NAL N-Acetylneuraminic acid aldolase, also called N-acetylneuraminate lyase (NAL), which catalyses the reversible aldol reaction of N-acetyl-D-mannosamine and pyruvate to give N-acetyl-D-neuraminic acid (D-sialic acid). It has a widespread application as biocatalyst for the synthesis of sialic acid and its derivatives. This enzyme has been shown to be quite specific for pyruvate as the donor, but flexible to a variety of D- and, to some extent, L-hexoses and pentoses as acceptor substrates. NAL is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases.
Probab=23.24 E-value=4e+02 Score=25.35 Aligned_cols=55 Identities=15% Similarity=0.221 Sum_probs=35.7
Q ss_pred CCeEEeeCCCCCCC--hHHHHHHHHHcCCcEEEeecCCC---cHHH--HHHHHHHHhc-CCce
Q 018376 264 GGLAVLAHPWALKN--PAAIIRKLKDVGLHGLEVYRSDG---KLVD--VNFLEKIDNF-LLLL 318 (357)
Q Consensus 264 GGvaVLAHP~~~~~--~~~li~~l~~~GlDGIEv~~~~~---~~~~--~~~~~lA~~~-~Ll~ 318 (357)
|.++|+|+-+.... ..++...+.+.|.||+=+..|+. +.+. +++..+|+.- +|.+
T Consensus 69 ~~~~viagv~~~~~~~ai~~a~~a~~~Gad~v~~~~P~y~~~~~~~i~~~~~~v~~a~~~lpi 131 (288)
T cd00954 69 GKVTLIAHVGSLNLKESQELAKHAEELGYDAISAITPFYYKFSFEEIKDYYREIIAAAASLPM 131 (288)
T ss_pred CCCeEEeccCCCCHHHHHHHHHHHHHcCCCEEEEeCCCCCCCCHHHHHHHHHHHHHhcCCCCE
Confidence 45788888765321 23455567888999998877754 2222 4677888877 6554
No 221
>COG1737 RpiR Transcriptional regulators [Transcription]
Probab=23.16 E-value=67 Score=30.75 Aligned_cols=24 Identities=33% Similarity=0.315 Sum_probs=20.3
Q ss_pred CCCHHHHHHHHHHcCCcEEEEecC
Q 018376 87 YLSPSKLVERAHCNGVKVLALTDH 110 (357)
Q Consensus 87 ~~tp~elv~~A~~~Gl~~iaITDH 110 (357)
+-..-+.++.|+++|.+.|+|||.
T Consensus 190 t~e~i~~a~~ak~~ga~vIaiT~~ 213 (281)
T COG1737 190 TREIVEAAELAKERGAKVIAITDS 213 (281)
T ss_pred cHHHHHHHHHHHHCCCcEEEEcCC
Confidence 345567899999999999999996
No 222
>PRK07583 cytosine deaminase-like protein; Validated
Probab=23.13 E-value=2e+02 Score=29.22 Aligned_cols=59 Identities=17% Similarity=0.174 Sum_probs=39.9
Q ss_pred eEEceeeeCcCCCCCCCHHHHHHHHHHcCCcEEEEecCCCCCCH------HHHHHHHHhcCCeEE
Q 018376 73 VVFELHSHSNFSDGYLSPSKLVERAHCNGVKVLALTDHDTMSGI------PEAIETARRFGMKII 131 (357)
Q Consensus 73 ~~~DLH~HT~~SDG~~tp~elv~~A~~~Gl~~iaITDHdt~~g~------~~~~~~a~~~gi~vi 131 (357)
..+++|+|-.-..+...++.+.+.+.+.|+..-.+.+|-+.-+. .+..+..++.|+.++
T Consensus 226 ~~v~vH~~E~~~~~~~~l~~~~~~~~~~G~~~~v~i~H~~~l~~~~~~~~~~~i~~la~~gv~vv 290 (438)
T PRK07583 226 LDLDLHVDETGDPASRTLKAVAEAALRNGFEGKVTCGHCCSLAVQPEEQAQATIALVAEAGIAIV 290 (438)
T ss_pred CCcEEeECCCCCchHHHHHHHHHHHHHhCCCCCEEEEeccchhcCCHHHHHHHHHHHHHcCCeEE
Confidence 44566665433345556888899999999887788899765432 245556667787766
No 223
>PRK13936 phosphoheptose isomerase; Provisional
Probab=23.03 E-value=88 Score=28.25 Aligned_cols=24 Identities=29% Similarity=0.379 Sum_probs=17.2
Q ss_pred CCHHHHHHHHHHcCCcEEEEecCC
Q 018376 88 LSPSKLVERAHCNGVKVLALTDHD 111 (357)
Q Consensus 88 ~tp~elv~~A~~~Gl~~iaITDHd 111 (357)
-.+-++++.|+++|.+.|+||+.+
T Consensus 125 ~~~~~~~~~ak~~g~~iI~IT~~~ 148 (197)
T PRK13936 125 ANVIQAIQAAHEREMHVVALTGRD 148 (197)
T ss_pred HHHHHHHHHHHHCCCeEEEEECCC
Confidence 335567777888888888888754
No 224
>cd05005 SIS_PHI Hexulose-6-phosphate isomerase (PHI). PHI is a member of the SIS (Sugar ISomerase domain) superfamily. In the ribulose monophosphate pathway of formaldehyde fixation, hexulose-6-phosphate synthase catalyzes the condensation of ribulose-5-phosphate with formadelhyde to become hexulose-6-phosphate, which is then isomerized to fructose-6-phosphate by PHI.
Probab=23.02 E-value=91 Score=27.34 Aligned_cols=25 Identities=28% Similarity=0.314 Sum_probs=20.5
Q ss_pred CCHHHHHHHHHHcCCcEEEEecCCC
Q 018376 88 LSPSKLVERAHCNGVKVLALTDHDT 112 (357)
Q Consensus 88 ~tp~elv~~A~~~Gl~~iaITDHdt 112 (357)
-..-++++.|++.|.+.++|||...
T Consensus 89 ~~~i~~~~~ak~~g~~iI~IT~~~~ 113 (179)
T cd05005 89 SSVVNAAEKAKKAGAKVVLITSNPD 113 (179)
T ss_pred HHHHHHHHHHHHCCCeEEEEECCCC
Confidence 3445789999999999999999644
No 225
>TIGR00262 trpA tryptophan synthase, alpha subunit. Tryptophan synthase catalyzes the last step in the biosynthesis of tryptophan. The alpha chain is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. In bacteria and plants each domain is found on a separate subunit (alpha and beta chains), while in fungi the two domains are fused together on a single multifunctional protein. The signature pattern for trpA contains three conserved acidic residues. [LIVM]-E-[LIVM]-G-x(2)-[FYC]-[ST]-[DE]-[PA]-[LIVMY]-[AGLI]-[DE]-G and this is located between residues 43-58 of the model. The Sulfolobus solfataricus trpA is known to be quite divergent from other known trpA sequences.
Probab=22.93 E-value=1.5e+02 Score=28.18 Aligned_cols=46 Identities=20% Similarity=0.302 Sum_probs=0.0
Q ss_pred CCCCH------HHHHHHHHHcCCcEEEEecCCCCCCHHHHHHHHHhcCCeEEE
Q 018376 86 GYLSP------SKLVERAHCNGVKVLALTDHDTMSGIPEAIETARRFGMKIIP 132 (357)
Q Consensus 86 G~~tp------~elv~~A~~~Gl~~iaITDHdt~~g~~~~~~~a~~~gi~vi~ 132 (357)
+..+| +++++.+++.|++.+.|-| -...-..++.+.+++.|+.+++
T Consensus 94 ~Y~Npi~~~G~e~f~~~~~~aGvdgviipD-lp~ee~~~~~~~~~~~gl~~i~ 145 (256)
T TIGR00262 94 TYYNLIFRKGVEEFYAKCKEVGVDGVLVAD-LPLEESGDLVEAAKKHGVKPIF 145 (256)
T ss_pred EeccHHhhhhHHHHHHHHHHcCCCEEEECC-CChHHHHHHHHHHHHCCCcEEE
No 226
>PF13081 DUF3941: Domain of unknown function (DUF3941)
Probab=22.87 E-value=54 Score=19.79 Aligned_cols=21 Identities=33% Similarity=0.461 Sum_probs=16.2
Q ss_pred hhhhhhhHHhhhhhcCCCCCC
Q 018376 7 VEKRSKDKKKKKKQKRGGGKK 27 (357)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~ 27 (357)
.+++++++|++..+|+-=+|+
T Consensus 2 ~~kN~~~~kN~~~GK~~YSKk 22 (24)
T PF13081_consen 2 HEKNMQEEKNRQQGKRAYSKK 22 (24)
T ss_pred hhHHHHHHHHHHHhhhccccc
Confidence 578889999988887765554
No 227
>PF13594 Amidohydro_5: Amidohydrolase; PDB: 4F0R_A 4F0S_A 1NFG_C 2FVM_A 2FVK_A 2FTY_D 1YBQ_B 1POJ_B 1ONW_A 2AQO_B ....
Probab=22.84 E-value=66 Score=23.54 Aligned_cols=31 Identities=23% Similarity=0.261 Sum_probs=17.3
Q ss_pred eEEceeeeCcCC-CCCCCHHHHHHHHHHcCCc
Q 018376 73 VVFELHSHSNFS-DGYLSPSKLVERAHCNGVK 103 (357)
Q Consensus 73 ~~~DLH~HT~~S-DG~~tp~elv~~A~~~Gl~ 103 (357)
-++|+|+|-.+. .....+......+.+.|+.
T Consensus 35 G~ID~H~H~~~~~~~~~~~~~~~~~~l~~GvT 66 (68)
T PF13594_consen 35 GFIDMHTHLGEPGWQSLDPETEAAAALAGGVT 66 (68)
T ss_dssp -EEEEEE-TTTTCEGGCTCHHHHHHHHHTTEE
T ss_pred CeEeeeeccccccccccchhhHHHHHHCccee
Confidence 689999997643 2233444455555566654
No 228
>PRK13585 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=22.72 E-value=2.1e+02 Score=26.21 Aligned_cols=51 Identities=22% Similarity=0.274 Sum_probs=40.5
Q ss_pred CCHHHHHHHHHHcCCcEEEEecCCC-CCC----HHHHHHHHHhcCCeEEEEEEEEe
Q 018376 88 LSPSKLVERAHCNGVKVLALTDHDT-MSG----IPEAIETARRFGMKIIPGVEIST 138 (357)
Q Consensus 88 ~tp~elv~~A~~~Gl~~iaITDHdt-~~g----~~~~~~~a~~~gi~vi~GiEis~ 138 (357)
.+|.++++++.+.|++.+-+-|.+. ..+ ...+.+.++..++.++.|=-|+.
T Consensus 32 ~~~~e~a~~~~~~G~~~l~i~dl~~~~~~~~~~~~~i~~i~~~~~~~l~v~GGi~~ 87 (241)
T PRK13585 32 GDPVEVAKRWVDAGAETLHLVDLDGAFEGERKNAEAIEKIIEAVGVPVQLGGGIRS 87 (241)
T ss_pred CCHHHHHHHHHHcCCCEEEEEechhhhcCCcccHHHHHHHHHHcCCcEEEcCCcCC
Confidence 3799999999999999999999994 334 34566777788888888766654
No 229
>PF00296 Bac_luciferase: Luciferase-like monooxygenase; InterPro: IPR011251 Bacterial luciferase is a flavin monooxygenase that catalyses the oxidation of long-chain aldehydes and releases energy in the form of visible light, and which uses flavin as a substrate rather than a cofactor []. Bacterial luciferase is an alpha/beta (LuxA/LuxB) heterodimer, where each individual subunit folds into a single TIM (beta/alpha)8-barrel domain. There are structural similarities between bacterial luciferase and nonfluorescent flavoproteins (LuxF, FP390), alkanesulphonate monooxygenase (SsuD), and coenzyme F420-dependent terahydromethanopterin reductase, which make up clearly related families with somewhat different folds [, , ]. More information about these proteins can be found at Protein of the Month: Luciferase [].; GO: 0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 0055114 oxidation-reduction process; PDB: 2I7G_B 1NFP_A 1TVL_A 1YW1_A 1M41_B 1NQK_A 2B81_A 3RAO_A 1LUC_B 3FGC_B ....
Probab=22.71 E-value=1.9e+02 Score=27.33 Aligned_cols=47 Identities=15% Similarity=0.075 Sum_probs=29.0
Q ss_pred HHHHHHHHcCCcEEEEecCCCCCC------HHHHHHHHHh-cCCeEEEEEEEEe
Q 018376 92 KLVERAHCNGVKVLALTDHDTMSG------IPEAIETARR-FGMKIIPGVEIST 138 (357)
Q Consensus 92 elv~~A~~~Gl~~iaITDHdt~~g------~~~~~~~a~~-~gi~vi~GiEis~ 138 (357)
++++.|-+.|++.+.+.||+.... +.-+..++.. ..|++-+|+=...
T Consensus 27 ~~a~~ae~~Gfd~~w~~eh~~~~~~~~~~p~~~~a~~a~~T~~i~lg~~v~~~~ 80 (307)
T PF00296_consen 27 ELAQLAEELGFDSVWVSEHHFTDYGSSPDPFVLLAALAARTKRIRLGTAVTPLP 80 (307)
T ss_dssp HHHHHHHHTT-SEEEEE-SSSSTTTSTS-HHHHHHHHHHT-SSSEEEEEEEECS
T ss_pred HHHHHHHHcCCCEEEecccCCCccccchhHHHHHHHHhhccCccceeeeeeccc
Confidence 456677799999999999998632 2222233333 5578777776544
No 230
>cd00019 AP2Ec AP endonuclease family 2; These endonucleases play a role in DNA repair. Cleave phosphodiester bonds at apurinic or apyrimidinic sites; the alignment also contains hexulose-6-phosphate isomerases, enzymes that catalyze the epimerization of D-arabino-6-hexulose 3-phosphate to D-fructose 6-phosphate, via cleaving the phosphoesterbond with the sugar.
Probab=22.56 E-value=2.2e+02 Score=26.66 Aligned_cols=17 Identities=24% Similarity=0.096 Sum_probs=10.6
Q ss_pred CCHHHHHHHHHHcC--CeE
Q 018376 251 PLAEVAVQLIHRTG--GLA 267 (357)
Q Consensus 251 ~~~eevI~~I~~aG--Gva 267 (357)
.+.++.++.++++| |+=
T Consensus 10 ~~l~~~l~~a~~~G~d~vE 28 (279)
T cd00019 10 FGLENALKRAKEIGFDTVA 28 (279)
T ss_pred ccHHHHHHHHHHcCCCEEE
Confidence 45666677777776 553
No 231
>cd08562 GDPD_EcUgpQ_like Glycerophosphodiester phosphodiesterase domain in Escherichia coli cytosolic glycerophosphodiester phosphodiesterase UgpQ and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in Escherichia coli cytosolic glycerophosphodiester phosphodiesterase (GP-GDE, EC 3.1.4.46), UgpQ, and similar proteins. GP-GDE plays an essential role in the metabolic pathway of E. coli. It catalyzes the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols, which are major sources of carbon and phosphate. E. coli possesses two major G3P uptake systems: Glp and Ugp, which contain genes coding for two distinct GP-GDEs. UgpQ gene from the E. coli ugp operon codes for a cytosolic phosphodiesterase GlpQ, which is the prototype of this family. Various glycerophosphodiesters, such as glycerophosphocholine (GPC), glycerophosphoethanolanmine (GPE), glycerophosphoglycerol (GPG)
Probab=22.47 E-value=1.7e+02 Score=26.40 Aligned_cols=40 Identities=20% Similarity=0.305 Sum_probs=29.0
Q ss_pred HHHHHHHHHcCCeEEeeCCCCCCChHHHHHHHHHcCCcEEEeec
Q 018376 254 EVAVQLIHRTGGLAVLAHPWALKNPAAIIRKLKDVGLHGLEVYR 297 (357)
Q Consensus 254 eevI~~I~~aGGvaVLAHP~~~~~~~~li~~l~~~GlDGIEv~~ 297 (357)
.+.|+.+|++ |+.|.+. ...+ .+.+..+..+|+|||..-+
T Consensus 189 ~~~v~~~~~~-g~~v~~w--Tvn~-~~~~~~~~~~gVdgiiTD~ 228 (229)
T cd08562 189 EEQVKALKDA-GYKLLVY--TVND-PARAAELLEWGVDAIFTDR 228 (229)
T ss_pred HHHHHHHHHC-CCEEEEE--eCCC-HHHHHHHHHCCCCEEEcCC
Confidence 5789999888 5777765 2333 4567888899999987654
No 232
>COG1809 (2R)-phospho-3-sulfolactate synthase (PSL synthase, CoM biosynthesis) [Coenzyme transport and metabolism]
Probab=22.41 E-value=1.9e+02 Score=27.30 Aligned_cols=64 Identities=11% Similarity=0.217 Sum_probs=43.6
Q ss_pred HHHHHHHHHHcC------C-eEEeeCCCCCCChHHHHHHHHHcCCcEEEeecCCCc--H-HHHHHHHHHHhcCCce
Q 018376 253 AEVAVQLIHRTG------G-LAVLAHPWALKNPAAIIRKLKDVGLHGLEVYRSDGK--L-VDVNFLEKIDNFLLLL 318 (357)
Q Consensus 253 ~eevI~~I~~aG------G-vaVLAHP~~~~~~~~li~~l~~~GlDGIEv~~~~~~--~-~~~~~~~lA~~~~Ll~ 318 (357)
+++-|+..|..| | +.++||-. ..-++.+.++.+.|++.||+.+..-+ . ...++.+-|.+.|+++
T Consensus 62 V~ekid~y~e~~i~v~pGGtlfe~a~~~--~kvdeyl~e~~~lGfe~iEIS~G~i~m~~eek~~lIe~a~d~Gf~v 135 (258)
T COG1809 62 VKEKIDMYKENDIYVFPGGTLFEIAYSQ--DKVDEYLNEAKELGFEAIEISNGTIPMSTEEKCRLIERAVDEGFMV 135 (258)
T ss_pred HHHHHHHHHHcCceecCCceEEEeehhc--ccHHHHHHHHHHcCccEEEecCCeeecchHHHHHHHHHHHhcccEE
Confidence 456667777654 3 23455531 23477899999999999999986533 2 2246788888888876
No 233
>cd01911 proteasome_alpha proteasome alpha subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 different alpha and 10 different beta proteasome subunit genes while archaea have one of each.
Probab=22.40 E-value=94 Score=28.08 Aligned_cols=36 Identities=22% Similarity=0.305 Sum_probs=31.5
Q ss_pred ceeeeCcCC-CCCCCHHHHHHHHHHcCCcEEEEecCCC
Q 018376 76 ELHSHSNFS-DGYLSPSKLVERAHCNGVKVLALTDHDT 112 (357)
Q Consensus 76 DLH~HT~~S-DG~~tp~elv~~A~~~Gl~~iaITDHdt 112 (357)
|++. |.|| ||.+.--|...+|...|-..|||.-.|.
T Consensus 2 ~~~~-~~f~~~G~~~q~eya~~~~~~G~tvigi~~~dg 38 (209)
T cd01911 2 DRSI-TTFSPEGRLFQVEYALEAVKNGSTAVGIKGKDG 38 (209)
T ss_pred CCCC-ccCCCCCEEeHHHHHHHHHHcCCCEEEEEECCE
Confidence 5566 6787 9999999999999999999999988765
No 234
>cd06547 GH85_ENGase Endo-beta-N-acetylglucosaminidase (ENGase) hydrolyzes the N-N'-diacetylchitobiosyl core of N-glycosylproteins. The beta-1,4-glycosyl bond located between two N-acetylglucosamine residues is hydrolyzed such that N-acetylglucosamine 1 remains with the protein and N-acetylglucosamine 2 forms the reducing end of the released glycan. ENGase is a key enzyme in the processing of free oligosaccharides in the cytosol of eukaryotes. Oligosaccharides formed in the lumen of the endoplasmic reticulum are transported into the cytosol where they are catabolized by cytosolic ENGases and other enzymes, possibly to maximize the reutilization of the component sugars. ENGases have an eight-stranded alpha/beta barrel topology and are classified as a family 85 glycosyl hydrolase (GH85) domain. The GH85 ENGases are sequence-similar to the family 18 glycosyl hydrolases, also known as GH18 chitinases. An ENGase-like protein is also found in bacteria and is included in this alignment mod
Probab=22.37 E-value=70 Score=31.77 Aligned_cols=39 Identities=23% Similarity=0.213 Sum_probs=31.8
Q ss_pred CCceEEceeeeCcCCCCCCCHHHHHHHHHHcCCcEEEEe
Q 018376 70 DNNVVFELHSHSNFSDGYLSPSKLVERAHCNGVKVLALT 108 (357)
Q Consensus 70 ~~~~~~DLH~HT~~SDG~~tp~elv~~A~~~Gl~~iaIT 108 (357)
.+|-.+|.++==..|-++.+|...++.|+++|+++++.-
T Consensus 28 ~~W~yvD~fvywsh~~~~iPp~~~idaAHknGV~Vlgti 66 (339)
T cd06547 28 SYWQYVDTFVYFSHSAVTIPPADWINAAHRNGVPVLGTF 66 (339)
T ss_pred cchhhhheeecccCccccCCCcHHHHHHHhcCCeEEEEE
Confidence 367778887665566778999999999999999999854
No 235
>PF08288 PIGA: PIGA (GPI anchor biosynthesis); InterPro: IPR013234 This domain is found on phosphatidylinositol N-acetylglucosaminyltransferase proteins. These proteins are involved in GPI anchor biosynthesis and are associated with the disease paroxysmal nocturnal haemoglobinuria [].; GO: 0006506 GPI anchor biosynthetic process
Probab=22.33 E-value=87 Score=25.19 Aligned_cols=33 Identities=33% Similarity=0.492 Sum_probs=25.2
Q ss_pred ceeeeCcCCCCCCCHHHHHHHHHHcCCcEEEEecCCC
Q 018376 76 ELHSHSNFSDGYLSPSKLVERAHCNGVKVLALTDHDT 112 (357)
Q Consensus 76 DLH~HT~~SDG~~tp~elv~~A~~~Gl~~iaITDHdt 112 (357)
-.|.|+.+|- + .-|.+-.|+..|++. ..|||.-
T Consensus 53 IVHgH~a~S~--l-~hE~i~hA~~mGlkt-VfTDHSL 85 (90)
T PF08288_consen 53 IVHGHQAFST--L-CHEAILHARTMGLKT-VFTDHSL 85 (90)
T ss_pred EEEeehhhhH--H-HHHHHHHHHhCCCcE-Eeecccc
Confidence 4699999882 2 235678899999998 5899963
No 236
>TIGR00559 pdxJ pyridoxine 5'-phosphate synthase. PdxJ is required in the biosynthesis of pyridoxine (vitamin B6), a precursor to the enzyme cofactor pyridoxal phosphate. ECOCYC describes the predicted reaction equation as 1-amino-propan-2-one-3-phosphate + deoxyxylulose-5-phosphate = pyridoxine-5'-phosphate. The product of that reaction is oxidized by PdxH to pyridoxal 5'-phosphate.
Probab=22.31 E-value=6.6e+02 Score=23.82 Aligned_cols=65 Identities=17% Similarity=0.048 Sum_probs=46.2
Q ss_pred CCHHHHHHHHHHcCCeEEe-eCCCCCCChHHHHHHHHHcCCcEEEeecCCC-----cHH---H----HHHHHHHHhcCCc
Q 018376 251 PLAEVAVQLIHRTGGLAVL-AHPWALKNPAAIIRKLKDVGLHGLEVYRSDG-----KLV---D----VNFLEKIDNFLLL 317 (357)
Q Consensus 251 ~~~eevI~~I~~aGGvaVL-AHP~~~~~~~~li~~l~~~GlDGIEv~~~~~-----~~~---~----~~~~~lA~~~~Ll 317 (357)
-.+.++|+..+.+|=...| --|. .+-++..++.|.|.||.+...+ ... + .....+|.+.||-
T Consensus 110 ~~l~~~i~~l~~~gI~VSLFiDP~-----~~qi~~A~~~GAd~VELhTG~YA~a~~~~~~~~el~~i~~aa~~A~~lGL~ 184 (237)
T TIGR00559 110 DKLCELVKRFHAAGIEVSLFIDAD-----KDQISAAAEVGADRIEIHTGPYANAYNKKEMAEELQRIVKASVHAHSLGLK 184 (237)
T ss_pred HHHHHHHHHHHHCCCEEEEEeCCC-----HHHHHHHHHhCcCEEEEechhhhcCCCchhHHHHHHHHHHHHHHHHHcCCE
Confidence 3467899999998854443 3342 4568888999999999988532 111 1 2457899999999
Q ss_pred eee
Q 018376 318 LCL 320 (357)
Q Consensus 318 ~t~ 320 (357)
+..
T Consensus 185 VnA 187 (237)
T TIGR00559 185 VNA 187 (237)
T ss_pred Eec
Confidence 886
No 237
>PF13580 SIS_2: SIS domain; PDB: 1TK9_C 2I22_B 2I2W_A 1X92_A 3BJZ_D 2XBL_B 2X3Y_F 2YVA_B 3CVJ_D 3TRJ_D ....
Probab=22.27 E-value=87 Score=26.43 Aligned_cols=22 Identities=36% Similarity=0.365 Sum_probs=18.3
Q ss_pred CCCHHHHHHHHHHcCCcEEEEe
Q 018376 87 YLSPSKLVERAHCNGVKVLALT 108 (357)
Q Consensus 87 ~~tp~elv~~A~~~Gl~~iaIT 108 (357)
+-.+-+.++.|+++|+..|+||
T Consensus 116 s~~vi~a~~~Ak~~G~~vIalT 137 (138)
T PF13580_consen 116 SPNVIEAAEEAKERGMKVIALT 137 (138)
T ss_dssp SHHHHHHHHHHHHTT-EEEEEE
T ss_pred CHHHHHHHHHHHHCCCEEEEEe
Confidence 4566788999999999999998
No 238
>TIGR03249 KdgD 5-dehydro-4-deoxyglucarate dehydratase. 5-dehydro-4-deoxyglucarate dehydratase not only catalyzes the dehydration of the substrate (diol to ketone + water), but causes the decarboxylation of the intermediate product to yield 2-oxoglutarate semialdehyde (2,5-dioxopentanoate). The gene for the enzyme is usually observed in the vicinity of transporters and dehydratases handling D-galactarate and D-gluconate as well as aldehyde dehydrogenases which convert the product to alpha-ketoglutarate.
Probab=22.22 E-value=3e+02 Score=26.37 Aligned_cols=54 Identities=13% Similarity=0.029 Sum_probs=33.4
Q ss_pred cCCeEEeeCCCCCCCh---HHHHHHHHHcCCcEEEeecCCCc---HHH--HHHHHHHHhcCCce
Q 018376 263 TGGLAVLAHPWALKNP---AAIIRKLKDVGLHGLEVYRSDGK---LVD--VNFLEKIDNFLLLL 318 (357)
Q Consensus 263 aGGvaVLAHP~~~~~~---~~li~~l~~~GlDGIEv~~~~~~---~~~--~~~~~lA~~~~Ll~ 318 (357)
.|-++|++|-+. . . -++.+.+.+.|.|++-+..|+.. .+. .++..+|+.-++.+
T Consensus 72 ~g~~pvi~gv~~-~-t~~ai~~a~~a~~~Gadav~~~pP~y~~~s~~~i~~~f~~v~~a~~~pv 133 (296)
T TIGR03249 72 KGKVPVYTGVGG-N-TSDAIEIARLAEKAGADGYLLLPPYLINGEQEGLYAHVEAVCESTDLGV 133 (296)
T ss_pred CCCCcEEEecCc-c-HHHHHHHHHHHHHhCCCEEEECCCCCCCCCHHHHHHHHHHHHhccCCCE
Confidence 344788888763 2 2 23445567788888888777642 222 35777777766543
No 239
>cd08582 GDPD_like_2 Glycerophosphodiester phosphodiesterase domain of uncharacterized bacterial glycerophosphodiester phosphodiesterases. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in a group of uncharacterized bacterial glycerophosphodiester phosphodiesterase and similar proteins. They show high sequence similarity to Escherichia coli glycerophosphodiester phosphodiesterase, which catalyzes the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols.
Probab=22.22 E-value=1.8e+02 Score=26.61 Aligned_cols=42 Identities=14% Similarity=0.340 Sum_probs=30.8
Q ss_pred HHHHHHHHHcCCeEEeeCCCCCCChHHHHHHHHHcCCcEEEeecCC
Q 018376 254 EVAVQLIHRTGGLAVLAHPWALKNPAAIIRKLKDVGLHGLEVYRSD 299 (357)
Q Consensus 254 eevI~~I~~aGGvaVLAHP~~~~~~~~li~~l~~~GlDGIEv~~~~ 299 (357)
.+.|+.+|+. |+.|.++- ... ...+..+..+|+|||..-+|.
T Consensus 191 ~~~v~~~~~~-G~~v~~wT--vn~-~~~~~~l~~~GVdgi~TD~p~ 232 (233)
T cd08582 191 PAFIKALRDA-GLKLNVWT--VDD-AEDAKRLIELGVDSITTNRPG 232 (233)
T ss_pred HHHHHHHHHC-CCEEEEEe--CCC-HHHHHHHHHCCCCEEEcCCCC
Confidence 5788999988 57776653 233 456788889999999886653
No 240
>TIGR00612 ispG_gcpE 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase. Chlamydial members of the family have a long insert. The family is largely restricted to Bacteria, where it is widely but not universally distributed. No homology can be detected between the GcpE family and other proteins.
Probab=22.00 E-value=4.6e+02 Score=26.25 Aligned_cols=58 Identities=21% Similarity=0.318 Sum_probs=43.7
Q ss_pred ceEEceeeeCcCCCCCCCHHHHHHHHHHcCCcEEEEecCCCCC--CHHHHHHHHHhcCCeEEEEEEEEee
Q 018376 72 NVVFELHSHSNFSDGYLSPSKLVERAHCNGVKVLALTDHDTMS--GIPEAIETARRFGMKIIPGVEISTI 139 (357)
Q Consensus 72 ~~~~DLH~HT~~SDG~~tp~elv~~A~~~Gl~~iaITDHdt~~--g~~~~~~~a~~~gi~vi~GiEis~~ 139 (357)
....|+|.+ -.+...|.+.|++.+=|.-=|--. -+.+..+.|++.++.+-.|+---+.
T Consensus 74 PlVADIHFd----------~~lAl~a~~~g~dkiRINPGNig~~e~v~~vv~~ak~~~ipIRIGVN~GSL 133 (346)
T TIGR00612 74 PLVADIHFD----------YRLAALAMAKGVAKVRINPGNIGFRERVRDVVEKARDHGKAMRIGVNHGSL 133 (346)
T ss_pred CEEEeeCCC----------cHHHHHHHHhccCeEEECCCCCCCHHHHHHHHHHHHHCCCCEEEecCCCCC
Confidence 388899875 246778899999999997754322 2556778899999999999866543
No 241
>TIGR03128 RuMP_HxlA 3-hexulose-6-phosphate synthase. at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin. In these species, the enzyme is viewed as a lyase rather than a synthase and is called D-arabino 3-hexulose 6-phosphate formaldehyde lyase. Note that there is some overlap in specificity with the Escherichia coli enzyme 3-keto-L-gulonate 6-phosphate decarboxylase.
Probab=21.99 E-value=4e+02 Score=23.64 Aligned_cols=44 Identities=11% Similarity=0.071 Sum_probs=28.2
Q ss_pred HHHHHHcCCeEEeeCCCCCC-ChHHHHHHHHHcCCc-EEEeecCCC
Q 018376 257 VQLIHRTGGLAVLAHPWALK-NPAAIIRKLKDVGLH-GLEVYRSDG 300 (357)
Q Consensus 257 I~~I~~aGGvaVLAHP~~~~-~~~~li~~l~~~GlD-GIEv~~~~~ 300 (357)
++...++|.=.|.-|..... ...++++...+.|+. ++++.++..
T Consensus 69 ~~~~~~~Gad~i~vh~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~t 114 (206)
T TIGR03128 69 AEQAFAAGADIVTVLGVADDATIKGAVKAAKKHGKEVQVDLINVKD 114 (206)
T ss_pred HHHHHHcCCCEEEEeccCCHHHHHHHHHHHHHcCCEEEEEecCCCC
Confidence 67777888888888865421 235677777777754 455555533
No 242
>PF00701 DHDPS: Dihydrodipicolinate synthetase family; InterPro: IPR002220 Dihydropicolinate synthase (DHDPS) is the key enzyme in lysine biosynthesis via the diaminopimelate pathway of prokaryotes, some phycomycetes and higher plants. The enzyme catalyses the condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a ping-pong mechanism in which pyruvate binds to the enzyme by forming a Schiff-base with a lysine residue []. Three other proteins are structurally related to DHDPS and probably also act via a similar catalytic mechanism. These are Escherichia coli N-acetylneuraminate lyase (4.1.3.3 from EC) (gene nanA), which catalyzes the condensation of N-acetyl-D-mannosamine and pyruvate to form N-acetylneuraminate; Rhizobium meliloti (Sinorhizobium meliloti) protein mosA [], which is involved in the biosynthesis of the rhizopine 3-o-methyl-scyllo-inosamine; and E. coli hypothetical protein yjhH. The sequences of DHDPS from different sources are well-conserved. The structure takes the form of a homotetramer, in which 2 monomers are related by an approximate 2-fold symmetry []. Each monomer comprises 2 domains: an 8-fold alpha-/beta-barrel, and a C-terminal alpha-helical domain. The fold resembles that of N-acetylneuraminate lyase. The active site lysine is located in the barrel domain, and has access via 2 channels on the C-terminal side of the barrel.; GO: 0016829 lyase activity, 0008152 metabolic process; PDB: 3B4U_B 3S8H_A 3QZE_B 1XXX_F 3L21_F 3IRD_A 3A5F_B 3G0S_B 3DAQ_C 3UQN_A ....
Probab=21.94 E-value=2.9e+02 Score=26.17 Aligned_cols=57 Identities=19% Similarity=0.126 Sum_probs=35.8
Q ss_pred cCCeEEeeCCCCCC--ChHHHHHHHHHcCCcEEEeecCCC---cHHH--HHHHHHHHhcCCcee
Q 018376 263 TGGLAVLAHPWALK--NPAAIIRKLKDVGLHGLEVYRSDG---KLVD--VNFLEKIDNFLLLLC 319 (357)
Q Consensus 263 aGGvaVLAHP~~~~--~~~~li~~l~~~GlDGIEv~~~~~---~~~~--~~~~~lA~~~~Ll~t 319 (357)
.|.++|+++-+... +.-++.+.+.+.|.||+-+..|+. +.+. +++.++|+.-++.+.
T Consensus 68 ~~~~~vi~gv~~~st~~~i~~a~~a~~~Gad~v~v~~P~~~~~s~~~l~~y~~~ia~~~~~pi~ 131 (289)
T PF00701_consen 68 AGRVPVIAGVGANSTEEAIELARHAQDAGADAVLVIPPYYFKPSQEELIDYFRAIADATDLPII 131 (289)
T ss_dssp TTSSEEEEEEESSSHHHHHHHHHHHHHTT-SEEEEEESTSSSCCHHHHHHHHHHHHHHSSSEEE
T ss_pred cCceEEEecCcchhHHHHHHHHHHHhhcCceEEEEeccccccchhhHHHHHHHHHHhhcCCCEE
Confidence 35678888865432 123455667788999998887754 2222 467788877766653
No 243
>PRK06552 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=21.85 E-value=3.4e+02 Score=25.04 Aligned_cols=59 Identities=14% Similarity=0.127 Sum_probs=42.8
Q ss_pred HHHHHHHHcCCeEEeeCCCCCCChHHHHHHHHHcCCcEEEeecCCCcHHHHHHHHHHHhcC
Q 018376 255 VAVQLIHRTGGLAVLAHPWALKNPAAIIRKLKDVGLHGLEVYRSDGKLVDVNFLEKIDNFL 315 (357)
Q Consensus 255 evI~~I~~aGGvaVLAHP~~~~~~~~li~~l~~~GlDGIEv~~~~~~~~~~~~~~lA~~~~ 315 (357)
++++.+.+.+=++|+..... .....+.+.|.+.|+..+|+-..... ..+.+..++++++
T Consensus 5 ~~~~~l~~~~vi~vir~~~~-~~a~~~~~al~~~Gi~~iEit~~~~~-a~~~i~~l~~~~~ 63 (213)
T PRK06552 5 EILTKLKANGVVAVVRGESK-EEALKISLAVIKGGIKAIEVTYTNPF-ASEVIKELVELYK 63 (213)
T ss_pred HHHHHHHHCCEEEEEECCCH-HHHHHHHHHHHHCCCCEEEEECCCcc-HHHHHHHHHHHcC
Confidence 56788999999999987531 22355778899999999999775332 2234778888883
No 244
>PRK08674 bifunctional phosphoglucose/phosphomannose isomerase; Validated
Probab=21.63 E-value=1.7e+02 Score=28.67 Aligned_cols=37 Identities=27% Similarity=0.335 Sum_probs=26.5
Q ss_pred CCCHHHHHHHHHHcCCcEEEEecCCCCCCHHHHHHHHHhcCCe
Q 018376 87 YLSPSKLVERAHCNGVKVLALTDHDTMSGIPEAIETARRFGMK 129 (357)
Q Consensus 87 ~~tp~elv~~A~~~Gl~~iaITDHdt~~g~~~~~~~a~~~gi~ 129 (357)
+..+-+.++.|+++|.+.|+||+ ++ .+.+.|...+..
T Consensus 91 T~e~~~a~~~a~~~ga~vIaIT~-~~-----~L~~~a~~~~~~ 127 (337)
T PRK08674 91 TEETLSAVEQALKRGAKIIAITS-GG-----KLKEMAKEHGLP 127 (337)
T ss_pred CHHHHHHHHHHHHCCCeEEEECC-Cc-----hHHHHHHhcCCe
Confidence 44555779999999999999997 22 255666655543
No 245
>cd05710 SIS_1 A subgroup of the SIS domain. SIS (Sugar ISomerase) domains are found in many phosphosugar isomerases and phosphosugar binding proteins. SIS domains are also found in proteins that regulate the expression of genes involved in synthesis of phosphosugars.
Probab=21.62 E-value=1.1e+02 Score=25.01 Aligned_cols=28 Identities=21% Similarity=0.251 Sum_probs=22.9
Q ss_pred CCCCCHHHHHHHHHHcCCcEEEEecCCC
Q 018376 85 DGYLSPSKLVERAHCNGVKVLALTDHDT 112 (357)
Q Consensus 85 DG~~tp~elv~~A~~~Gl~~iaITDHdt 112 (357)
--+-..-+.++.|+++|...++||+...
T Consensus 58 G~t~~~~~~~~~a~~~g~~vi~iT~~~~ 85 (120)
T cd05710 58 GNTKETVAAAKFAKEKGATVIGLTDDED 85 (120)
T ss_pred CCChHHHHHHHHHHHcCCeEEEEECCCC
Confidence 3345677889999999999999999654
No 246
>cd01298 ATZ_TRZ_like TRZ/ATZ family contains enzymes from the atrazine degradation pathway and related hydrolases. Atrazine, a chlorinated herbizide, can be catabolized by a variety of different bacteria. The first three steps of the atrazine dehalogenation pathway are catalyzed by atrazine chlorohydrolase (AtzA), hydroxyatrazine ethylaminohydrolase (AtzB), and N-isopropylammelide N-isopropylaminohydrolase (AtzC). All three enzymes belong to the superfamily of metal dependent hydrolases. AtzA and AtzB, beside other related enzymes are represented in this CD.
Probab=21.58 E-value=2.1e+02 Score=28.05 Aligned_cols=61 Identities=18% Similarity=0.285 Sum_probs=34.1
Q ss_pred eEEceeeeCcCC--CC--------------------CCCHHHHHH-------HHHHcCCcEEEEecCCCCCCHHHHHHHH
Q 018376 73 VVFELHSHSNFS--DG--------------------YLSPSKLVE-------RAHCNGVKVLALTDHDTMSGIPEAIETA 123 (357)
Q Consensus 73 ~~~DLH~HT~~S--DG--------------------~~tp~elv~-------~A~~~Gl~~iaITDHdt~~g~~~~~~~a 123 (357)
-++|.|+|...+ .| ..+++++.. ++.+.|+..+ .||..... ....+.+
T Consensus 57 Glid~H~Hl~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~GvTtv--~d~~~~~~-~~~~~~~ 133 (411)
T cd01298 57 GLVNTHTHLAMTLLRGLADDLPLMEWLKDLIWPLERLLTEEDVYLGALLALAEMIRSGTTTF--ADMYFFYP-DAVAEAA 133 (411)
T ss_pred CccccccchhhHHhhcccCCCCHHHHHHhhhhhhhhcCCHHHHHHHHHHHHHHHHhcCccEE--ECccccch-HHHHHHH
Confidence 589999998643 11 134554432 2345776654 46644432 3444555
Q ss_pred HhcCCeEEEEEEE
Q 018376 124 RRFGMKIIPGVEI 136 (357)
Q Consensus 124 ~~~gi~vi~GiEi 136 (357)
.+.|+++..+.++
T Consensus 134 ~~~g~r~~~~~~~ 146 (411)
T cd01298 134 EELGIRAVLGRGI 146 (411)
T ss_pred HHhCCeEEEEcce
Confidence 5667776665554
No 247
>TIGR00538 hemN oxygen-independent coproporphyrinogen III oxidase. This model represents HemN, the oxygen-independent coproporphyrinogen III oxidase that replaces HemF function under anaerobic conditions. Several species, including E. coli, Helicobacter pylori, and Aquifex aeolicus, have both a member of this family and a member of another, closely related family for which there is no evidence of coproporphyrinogen III oxidase activity. Members of this family have a perfectly conserved motif PYRT[SC]YP in a region N-terminal to the region of homology with the related uncharacterized protein.
Probab=21.44 E-value=2.7e+02 Score=28.54 Aligned_cols=42 Identities=19% Similarity=0.364 Sum_probs=26.4
Q ss_pred CHHHHHHHHHHc----C--CeEEeeCCCCCCChHHHHHHHHHcCCcEEEe
Q 018376 252 LAEVAVQLIHRT----G--GLAVLAHPWALKNPAAIIRKLKDVGLHGLEV 295 (357)
Q Consensus 252 ~~eevI~~I~~a----G--GvaVLAHP~~~~~~~~li~~l~~~GlDGIEv 295 (357)
.+.++++.|++. . -+.+-++|.... ++.+..|+++|+..|.+
T Consensus 120 ~l~~ll~~i~~~~~~~~~~eitie~np~~l~--~e~l~~lk~~G~~risi 167 (455)
T TIGR00538 120 QISRLMKLIRENFPFNADAEISIEIDPRYIT--KDVIDALRDEGFNRLSF 167 (455)
T ss_pred HHHHHHHHHHHhCCCCCCCeEEEEeccCcCC--HHHHHHHHHcCCCEEEE
Confidence 345666666653 1 366677775432 46777788888776665
No 248
>cd03174 DRE_TIM_metallolyase DRE-TIM metallolyase superfamily. The DRE-TIM metallolyase superfamily includes 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM".
Probab=21.35 E-value=3.9e+02 Score=24.50 Aligned_cols=49 Identities=29% Similarity=0.335 Sum_probs=38.4
Q ss_pred HHHHHHHHHcCCcEEEEecCCC---------------CCCHHHHHHHHHhcCCeEEEEEEEEee
Q 018376 91 SKLVERAHCNGVKVLALTDHDT---------------MSGIPEAIETARRFGMKIIPGVEISTI 139 (357)
Q Consensus 91 ~elv~~A~~~Gl~~iaITDHdt---------------~~g~~~~~~~a~~~gi~vi~GiEis~~ 139 (357)
++.++.|.+.|++.+.|.+.-+ +....++.+.+++.|+.+...+|-.+.
T Consensus 77 ~~~i~~a~~~g~~~i~i~~~~s~~~~~~~~~~~~~~~~~~~~~~i~~a~~~G~~v~~~~~~~~~ 140 (265)
T cd03174 77 EKGIERALEAGVDEVRIFDSASETHSRKNLNKSREEDLENAEEAIEAAKEAGLEVEGSLEDAFG 140 (265)
T ss_pred hhhHHHHHhCCcCEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEEEEeecC
Confidence 7789999999999999999655 233445666778899999888876554
No 249
>PRK15452 putative protease; Provisional
Probab=21.33 E-value=3.6e+02 Score=27.85 Aligned_cols=56 Identities=9% Similarity=0.017 Sum_probs=39.7
Q ss_pred CHHHHHHHHHHcCCeEEeeCCCCCCC-----hHHHHHHHHHcCCcEEEeecCCCcHHHHHHHHHHHhc
Q 018376 252 LAEVAVQLIHRTGGLAVLAHPWALKN-----PAAIIRKLKDVGLHGLEVYRSDGKLVDVNFLEKIDNF 314 (357)
Q Consensus 252 ~~eevI~~I~~aGGvaVLAHP~~~~~-----~~~li~~l~~~GlDGIEv~~~~~~~~~~~~~~lA~~~ 314 (357)
.++++++.+|+.|--..++=|....+ ....+..+.+.|+|||=|-+.. +..+++++
T Consensus 47 dl~eav~~ah~~g~kvyvt~n~i~~e~el~~~~~~l~~l~~~gvDgvIV~d~G-------~l~~~ke~ 107 (443)
T PRK15452 47 NLALGINEAHALGKKFYVVVNIAPHNAKLKTFIRDLEPVIAMKPDALIMSDPG-------LIMMVREH 107 (443)
T ss_pred HHHHHHHHHHHcCCEEEEEecCcCCHHHHHHHHHHHHHHHhCCCCEEEEcCHH-------HHHHHHHh
Confidence 36789999999998888876643322 1335677789999999998752 45666664
No 250
>TIGR01163 rpe ribulose-phosphate 3-epimerase. This family consists of Ribulose-phosphate 3-epimerase, also known as pentose-5-phosphate 3-epimerase (PPE). PPE converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. It has been found in a wide range of bacteria, archebacteria, fungi and plants.
Probab=21.30 E-value=5.7e+02 Score=22.50 Aligned_cols=46 Identities=17% Similarity=0.248 Sum_probs=25.9
Q ss_pred HHHHHHHHHHcCCeEEeeCCCCCCChHHHHHHHHHcCCcEEEeecC
Q 018376 253 AEVAVQLIHRTGGLAVLAHPWALKNPAAIIRKLKDVGLHGLEVYRS 298 (357)
Q Consensus 253 ~eevI~~I~~aGGvaVLAHP~~~~~~~~li~~l~~~GlDGIEv~~~ 298 (357)
.++.++.+..+|.-.|.-|..........++.++..|++-+=...+
T Consensus 68 ~~~~~~~~~~~gadgv~vh~~~~~~~~~~~~~~~~~g~~~~~~~~~ 113 (210)
T TIGR01163 68 PDRYIEDFAEAGADIITVHPEASEHIHRLLQLIKDLGAKAGIVLNP 113 (210)
T ss_pred HHHHHHHHHHcCCCEEEEccCCchhHHHHHHHHHHcCCcEEEEECC
Confidence 4566777777775555556654333344556666677653333333
No 251
>TIGR00510 lipA lipoate synthase. The family shows strong sequence conservation.
Probab=21.17 E-value=5.1e+02 Score=25.25 Aligned_cols=65 Identities=8% Similarity=-0.045 Sum_probs=40.2
Q ss_pred HHHHHHHHcC-CeEEeeCC----CCC-CChHHHHHHHHHcCCcEEEeec---CC--C--------cHHHHHHHHHHHhcC
Q 018376 255 VAVQLIHRTG-GLAVLAHP----WAL-KNPAAIIRKLKDVGLHGLEVYR---SD--G--------KLVDVNFLEKIDNFL 315 (357)
Q Consensus 255 evI~~I~~aG-GvaVLAHP----~~~-~~~~~li~~l~~~GlDGIEv~~---~~--~--------~~~~~~~~~lA~~~~ 315 (357)
++++.+++.+ |+.+-++- +-- ....+.+..|.+.|+|-+=+.- |. | +.+...+.++|.+.|
T Consensus 195 e~l~~ak~~~pgi~~~TgiIVGlGETeee~~etl~~Lrelg~d~v~igqYl~p~~~~~~v~~~~~p~~f~~~~~~a~~~g 274 (302)
T TIGR00510 195 KLLERAKEYLPNLPTKSGIMVGLGETNEEIKQTLKDLRDHGVTMVTLGQYLRPSRRHLPVKRYVSPEEFDYYRSVALEMG 274 (302)
T ss_pred HHHHHHHHhCCCCeecceEEEECCCCHHHHHHHHHHHHhcCCCEEEeecccCCCCCCCccccCCCHHHHHHHHHHHHHcC
Confidence 6777777773 66553332 211 1124567778899999887754 21 1 122357889999999
Q ss_pred Ccee
Q 018376 316 LLLC 319 (357)
Q Consensus 316 Ll~t 319 (357)
+...
T Consensus 275 f~~v 278 (302)
T TIGR00510 275 FLHA 278 (302)
T ss_pred Chhe
Confidence 8754
No 252
>TIGR03127 RuMP_HxlB 6-phospho 3-hexuloisomerase. Members of this protein family are 6-phospho 3-hexuloisomerase (PHI), or the PHI domain of a fusion protein. This enzyme is part of the ribulose monophosphate (RuMP) pathway, which in one direction removes the toxic metabolite formaldehyde by assimilation into fructose-6-phosphate. In the other direction, in species lacking a complete pentose phosphate pathway, the RuMP pathway yields ribulose-5-phosphate, necessary for nucleotide biosynthesis, at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin.
Probab=21.03 E-value=1.1e+02 Score=26.83 Aligned_cols=24 Identities=25% Similarity=0.267 Sum_probs=20.3
Q ss_pred CHHHHHHHHHHcCCcEEEEecCCC
Q 018376 89 SPSKLVERAHCNGVKVLALTDHDT 112 (357)
Q Consensus 89 tp~elv~~A~~~Gl~~iaITDHdt 112 (357)
..-++++.|+++|.+.++||+...
T Consensus 87 ~~i~~~~~ak~~g~~ii~IT~~~~ 110 (179)
T TIGR03127 87 SLVTVAKKAKEIGATVAAITTNPE 110 (179)
T ss_pred HHHHHHHHHHHCCCeEEEEECCCC
Confidence 345789999999999999999654
No 253
>PLN02801 beta-amylase
Probab=20.98 E-value=2.3e+02 Score=29.93 Aligned_cols=40 Identities=23% Similarity=0.429 Sum_probs=28.3
Q ss_pred HHHHHHHHHcCCcEEEe--ecCC----Cc-----HHHHHHHHHHHhcCCce
Q 018376 279 AAIIRKLKDVGLHGLEV--YRSD----GK-----LVDVNFLEKIDNFLLLL 318 (357)
Q Consensus 279 ~~li~~l~~~GlDGIEv--~~~~----~~-----~~~~~~~~lA~~~~Ll~ 318 (357)
..-+..|+.+|+|||+| |-.. .+ .-...+.+++++.||..
T Consensus 40 ~~~L~~LK~~GVdGVmvDVWWGiVE~~~P~~YdWsgY~~l~~mvr~~GLKl 90 (517)
T PLN02801 40 EKQLKRLKEAGVDGVMVDVWWGIVESKGPKQYDWSAYRSLFELVQSFGLKI 90 (517)
T ss_pred HHHHHHHHHcCCCEEEEeeeeeeeccCCCCccCcHHHHHHHHHHHHcCCeE
Confidence 34577899999999987 4421 11 11256889999999986
No 254
>TIGR03884 sel_bind_Methan selenium-binding protein. This model describes a homopentameric selenium-binding protein with a suggested role in selenium transport and delivery to selenophosphate synthase, the SelD protein. This protein family is closely related to pfam01906, but is shorter because of several deleted regions. It is restricted to the archaeal genus Methanococcus.
Probab=20.79 E-value=2e+02 Score=22.29 Aligned_cols=39 Identities=13% Similarity=0.058 Sum_probs=26.1
Q ss_pred CCCCCCHHHHHHHHHhcCCeEEEEEEEEeeeccCCCCCCCcEEEEEEec
Q 018376 110 HDTMSGIPEAIETARRFGMKIIPGVEISTIFCQRGSESEEPVHILAYYS 158 (357)
Q Consensus 110 Hdt~~g~~~~~~~a~~~gi~vi~GiEis~~~~~~~~~~g~~vHiLgy~~ 158 (357)
||.=.++.++.+.|++.|-.-+.|+.+++.. + -+++||.
T Consensus 25 ~d~d~Al~eM~e~A~~lGAnAVVGvr~d~s~-------~---eV~ayGT 63 (74)
T TIGR03884 25 DNVDEIVENLREKVKAKGGMGLIAFRITCAD-------G---KFLGYGT 63 (74)
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEEEEEcCC-------C---EEEEEEE
Confidence 3333445666677777788888888888751 2 6888873
No 255
>PRK01033 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=20.76 E-value=3.7e+02 Score=25.24 Aligned_cols=49 Identities=18% Similarity=0.152 Sum_probs=33.5
Q ss_pred CCCCCHHHHHHHHHHcCCcEEEEecCC---CCCCH--HHHHHHHHhcCCeEEEE
Q 018376 85 DGYLSPSKLVERAHCNGVKVLALTDHD---TMSGI--PEAIETARRFGMKIIPG 133 (357)
Q Consensus 85 DG~~tp~elv~~A~~~Gl~~iaITDHd---t~~g~--~~~~~~a~~~gi~vi~G 133 (357)
....+|.++++++.+.|++.+.+||-+ ++.|+ +.+.+.++..++.+|.+
T Consensus 149 ~~~~~~~e~~~~~~~~g~~~ii~~~i~~~G~~~G~d~~~i~~~~~~~~ipvIas 202 (258)
T PRK01033 149 KLKKDPLELAKEYEALGAGEILLNSIDRDGTMKGYDLELLKSFRNALKIPLIAL 202 (258)
T ss_pred cCCCCHHHHHHHHHHcCCCEEEEEccCCCCCcCCCCHHHHHHHHhhCCCCEEEe
Confidence 346789999999999999999999776 44453 33344444444554443
No 256
>cd03756 proteasome_alpha_archeal proteasome_alpha_archeal. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=20.73 E-value=87 Score=28.41 Aligned_cols=37 Identities=22% Similarity=0.318 Sum_probs=31.0
Q ss_pred EceeeeCcCC-CCCCCHHHHHHHHHHcCCcEEEEecCCC
Q 018376 75 FELHSHSNFS-DGYLSPSKLVERAHCNGVKVLALTDHDT 112 (357)
Q Consensus 75 ~DLH~HT~~S-DG~~tp~elv~~A~~~Gl~~iaITDHdt 112 (357)
.|+|+ |.|| ||.+---|...+|..+|-..|||.--|.
T Consensus 2 y~~~~-~~fsp~G~l~Q~eya~~av~~G~t~igik~~dg 39 (211)
T cd03756 2 YDRAI-TVFSPDGRLYQVEYAREAVKRGTTALGIKCKEG 39 (211)
T ss_pred CCCCC-ceECCCCeEhHHHHHHHHHHcCCCEEEEEECCE
Confidence 35566 5687 9999999999999999999999977654
No 257
>cd00086 homeodomain Homeodomain; DNA binding domains involved in the transcriptional regulation of key eukaryotic developmental processes; may bind to DNA as monomers or as homo- and/or heterodimers, in a sequence-specific manner.
Probab=20.72 E-value=2.9e+02 Score=18.87 Aligned_cols=20 Identities=20% Similarity=0.139 Sum_probs=16.0
Q ss_pred CCCCCCCHHHHhHHHHHhhh
Q 018376 24 GGKKKMTAEQSLAFNSVTEW 43 (357)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~~~ 43 (357)
+.+..+|.++...|..+++-
T Consensus 2 ~~r~~~~~~~~~~Le~~f~~ 21 (59)
T cd00086 2 RKRTRFTPEQLEELEKEFEK 21 (59)
T ss_pred CCCCcCCHHHHHHHHHHHHh
Confidence 45567889999989888876
No 258
>PF03659 Glyco_hydro_71: Glycosyl hydrolase family 71 ; InterPro: IPR005197 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is a family of alpha-1,3-glucanases belonging to glycoside hydrolase family 71 (GH71 from CAZY).
Probab=20.59 E-value=1.4e+02 Score=30.31 Aligned_cols=46 Identities=20% Similarity=0.327 Sum_probs=34.4
Q ss_pred HHHHHHHcCCcEEEEe----cCCCCCCHHHHHHHHHhcCCeEEEEEEEEe
Q 018376 93 LVERAHCNGVKVLALT----DHDTMSGIPEAIETARRFGMKIIPGVEIST 138 (357)
Q Consensus 93 lv~~A~~~Gl~~iaIT----DHdt~~g~~~~~~~a~~~gi~vi~GiEis~ 138 (357)
=++.|++.|+|++|+. |.-+..-+..+.++|+..|++++.-..+..
T Consensus 22 di~~A~~~GIDgFaLNig~~d~~~~~~l~~a~~AA~~~gFKlf~SfD~~~ 71 (386)
T PF03659_consen 22 DIRLAQAAGIDGFALNIGSSDSWQPDQLADAYQAAEAVGFKLFFSFDMNS 71 (386)
T ss_pred HHHHHHHcCCCEEEEecccCCcccHHHHHHHHHHHHhcCCEEEEEecccC
Confidence 4788999999999983 322333467788889989988887777653
No 259
>PRK05985 cytosine deaminase; Provisional
Probab=20.44 E-value=1.7e+02 Score=28.98 Aligned_cols=60 Identities=18% Similarity=0.257 Sum_probs=39.7
Q ss_pred eEEceeeeCcCCCCCCCHHHHHHHHHHcCCcEEEEecCCCCCC------HHHHHHHHHhcCCeEEE
Q 018376 73 VVFELHSHSNFSDGYLSPSKLVERAHCNGVKVLALTDHDTMSG------IPEAIETARRFGMKIIP 132 (357)
Q Consensus 73 ~~~DLH~HT~~SDG~~tp~elv~~A~~~Gl~~iaITDHdt~~g------~~~~~~~a~~~gi~vi~ 132 (357)
..+++|+|..-..+.....++++.+.+.|+..-....|-+.-+ ..+..+...+.|+.+..
T Consensus 205 ~~i~~Hv~e~~d~~~~~~~~~~e~~~~~g~~~~~~i~H~~~l~~~~~~~~~~~i~~lae~g~~v~~ 270 (391)
T PRK05985 205 VGIDIHLHEPGELGAFQLERIAARTRALGMQGRVAVSHAFCLGDLPEREVDRLAERLAEAGVAIMT 270 (391)
T ss_pred CCcEEeeCCCCCccHHHHHHHHHHHHHhCCCCCEehhhhhhhhcCCHHHHHHHHHHHHHcCCeEEE
Confidence 3466677765445666778889999999986545777865443 13445666678887754
No 260
>PRK13210 putative L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=20.36 E-value=1.5e+02 Score=27.60 Aligned_cols=45 Identities=13% Similarity=0.123 Sum_probs=32.4
Q ss_pred CCCHHHHHHHHHHcCCcEEEEecCCC---C-------CCHHHHHHHHHhcCCeEE
Q 018376 87 YLSPSKLVERAHCNGVKVLALTDHDT---M-------SGIPEAIETARRFGMKII 131 (357)
Q Consensus 87 ~~tp~elv~~A~~~Gl~~iaITDHdt---~-------~g~~~~~~~a~~~gi~vi 131 (357)
.++.++.++.|++.|++.|=++=++. . ....++.+++++.||.+-
T Consensus 15 ~~~~~e~~~~~~~~G~~~iEl~~~~~~~~~~~~~~~~~~~~~l~~~l~~~Gl~i~ 69 (284)
T PRK13210 15 HLSWEERLVFAKELGFDFVEMSVDESDERLARLDWSKEERLSLVKAIYETGVRIP 69 (284)
T ss_pred CCCHHHHHHHHHHcCCCeEEEecCCcccccccccCCHHHHHHHHHHHHHcCCCce
Confidence 47899999999999999998863221 0 124556777888888643
No 261
>PF13653 GDPD_2: Glycerophosphoryl diester phosphodiesterase family; PDB: 3RLG_A 2F9R_B 1XX1_A 3RLH_A.
Probab=20.24 E-value=94 Score=19.74 Aligned_cols=19 Identities=32% Similarity=0.440 Sum_probs=13.6
Q ss_pred HHHHHHHHHcCCcEEEeec
Q 018376 279 AAIIRKLKDVGLHGLEVYR 297 (357)
Q Consensus 279 ~~li~~l~~~GlDGIEv~~ 297 (357)
...+.++..+|+|||=.-+
T Consensus 10 ~~~~~~~l~~GVDgI~Td~ 28 (30)
T PF13653_consen 10 PASWRELLDLGVDGIMTDY 28 (30)
T ss_dssp HHHHHHHHHHT-SEEEES-
T ss_pred HHHHHHHHHcCCCEeeCCC
Confidence 4678889999999996543
No 262
>PRK08005 epimerase; Validated
Probab=20.21 E-value=6.8e+02 Score=23.06 Aligned_cols=95 Identities=11% Similarity=0.004 Sum_probs=0.0
Q ss_pred ccCCCCCCHHHHHHHHHHcCCeEEeeCCCCCCChHHHHHHHHHcCCcEEEeecCCCcHHHHHHHHHHHhcCCceeecccc
Q 018376 245 YSTGSEPLAEVAVQLIHRTGGLAVLAHPWALKNPAAIIRKLKDVGLHGLEVYRSDGKLVDVNFLEKIDNFLLLLCLRQIS 324 (357)
Q Consensus 245 yv~~~~~~~eevI~~I~~aGGvaVLAHP~~~~~~~~li~~l~~~GlDGIEv~~~~~~~~~~~~~~lA~~~~Ll~t~~~~~ 324 (357)
|||.-...+. +|+.|++.--+++=+|-.- .+|+..++.++++|.|-|-+.+-...... +..+.++++|...--
T Consensus 39 FVPN~tfG~~-~i~~l~~~t~~~~DvHLMv-~~P~~~i~~~~~~gad~It~H~Ea~~~~~-~~l~~Ik~~G~k~Gl---- 111 (210)
T PRK08005 39 FINNITFGMK-TIQAVAQQTRHPLSFHLMV-SSPQRWLPWLAAIRPGWIFIHAESVQNPS-EILADIRAIGAKAGL---- 111 (210)
T ss_pred cCCccccCHH-HHHHHHhcCCCCeEEEecc-CCHHHHHHHHHHhCCCEEEEcccCccCHH-HHHHHHHHcCCcEEE----
Q ss_pred cCCCCCCCCChhhhhhhhccccccC
Q 018376 325 NCDCALYPYPWQLLYDFLGLLASVL 349 (357)
Q Consensus 325 GSD~h~~~~~~~~l~~~~~~~~~~~ 349 (357)
.-... .|...+..+++.++-|+
T Consensus 112 AlnP~---Tp~~~i~~~l~~vD~Vl 133 (210)
T PRK08005 112 ALNPA---TPLLPYRYLALQLDALM 133 (210)
T ss_pred EECCC---CCHHHHHHHHHhcCEEE
No 263
>PLN02803 beta-amylase
Probab=20.16 E-value=2.5e+02 Score=29.75 Aligned_cols=40 Identities=20% Similarity=0.287 Sum_probs=28.3
Q ss_pred HHHHHHHHHcCCcEEEe--ecCC----Cc-----HHHHHHHHHHHhcCCce
Q 018376 279 AAIIRKLKDVGLHGLEV--YRSD----GK-----LVDVNFLEKIDNFLLLL 318 (357)
Q Consensus 279 ~~li~~l~~~GlDGIEv--~~~~----~~-----~~~~~~~~lA~~~~Ll~ 318 (357)
..-+..|+.+|+|||+| |... .+ .-...+.+++++.||..
T Consensus 110 ~~~L~~LK~~GVdGVmvDVWWGiVE~~~p~~YdWsgY~~l~~mvr~~GLKl 160 (548)
T PLN02803 110 NASLMALRSAGVEGVMVDAWWGLVEKDGPMKYNWEGYAELVQMVQKHGLKL 160 (548)
T ss_pred HHHHHHHHHcCCCEEEEEeeeeeeccCCCCcCCcHHHHHHHHHHHHcCCeE
Confidence 34577889999999987 5431 11 11256899999999985
No 264
>cd08556 GDPD Glycerophosphodiester phosphodiesterase domain as found in prokaryota and eukaryota, and similar proteins. The typical glycerophosphodiester phosphodiesterase domain (GDPD) consists of a TIM barrel and a small insertion domain named the GDPD-insertion (GDPD-I) domain, which is specific for GDPD proteins. This family corresponds to both typical GDPD domain and GDPD-like domain which lacks the GDPD-I region. Members in this family mainly consist of a large family of prokaryotic and eukaryotic glycerophosphodiester phosphodiesterases (GP-GDEs, EC 3.1.4.46), and a number of uncharacterized homologs. Sphingomyelinases D (SMases D) (sphingomyelin phosphodiesterase D, EC 3.1.4.41) from spider venom, SMases D-like proteins, and phospholipase D (PLD) from several pathogenic bacteria are also included in this family. GDPD plays an essential role in glycerol metabolism and catalyzes the hydrolysis of glycerophosphodiesters to sn-glycerol-3-phosphate (G3P) and the corresponding alcoho
Probab=20.16 E-value=2e+02 Score=24.71 Aligned_cols=38 Identities=24% Similarity=0.358 Sum_probs=29.3
Q ss_pred HHHHHHHHHcCCeEEeeCCCCCCChHHHHHHHHHcCCcEEEe
Q 018376 254 EVAVQLIHRTGGLAVLAHPWALKNPAAIIRKLKDVGLHGLEV 295 (357)
Q Consensus 254 eevI~~I~~aGGvaVLAHP~~~~~~~~li~~l~~~GlDGIEv 295 (357)
.+.++.+|+. |+.|.++.. .+ .+.+..+...|+|||..
T Consensus 150 ~~~i~~~~~~-g~~v~~wtv--n~-~~~~~~~~~~GVdgI~T 187 (189)
T cd08556 150 PELVRAAHAA-GLKVYVWTV--ND-PEDARRLLALGVDGIIT 187 (189)
T ss_pred HHHHHHHHHc-CCEEEEEcC--CC-HHHHHHHHHCCCCEEec
Confidence 5789999884 798988653 33 45678888999999964
No 265
>COG1671 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=20.12 E-value=1.2e+02 Score=26.76 Aligned_cols=23 Identities=17% Similarity=0.212 Sum_probs=18.5
Q ss_pred HHHHHHHHHHcCCcEEEEecCCC
Q 018376 90 PSKLVERAHCNGVKVLALTDHDT 112 (357)
Q Consensus 90 p~elv~~A~~~Gl~~iaITDHdt 112 (357)
-+++.+.|.+.|+..+-++++.-
T Consensus 14 k~~i~r~A~r~~~~v~~Van~~~ 36 (150)
T COG1671 14 KDEIYRVAERMGLKVTFVANFPH 36 (150)
T ss_pred HHHHHHHHHHhCCeEEEEeCCCc
Confidence 46778888999999999988643
No 266
>COG2108 Uncharacterized conserved protein related to pyruvate formate-lyase activating enzyme [General function prediction only]
Probab=20.09 E-value=8.9e+02 Score=24.27 Aligned_cols=149 Identities=23% Similarity=0.276 Sum_probs=0.0
Q ss_pred hhccCCCCCCCCCCCccccccccc--cCCCCceEEceeeeCcCCCCCCCHHHHHHHHHHcCCcEEEEecCCCCCCHHHHH
Q 018376 43 WVYLDQSHSSSSSEDDFGVHQILN--RAVDNNVVFELHSHSNFSDGYLSPSKLVERAHCNGVKVLALTDHDTMSGIPEAI 120 (357)
Q Consensus 43 ~~~~~~~p~~~~~~~~~~~~~~~~--~~~~~~~~~DLH~HT~~SDG~~tp~elv~~A~~~Gl~~iaITDHdt~~g~~~~~ 120 (357)
.+.+.+|.--.-+++.++-+..++ || .-+.+++++.|+..+-.+++||==|.+.-+....
T Consensus 36 G~C~~~CfYCPvs~~r~gkdviyaNErp------------------V~~~eDii~ea~~~~a~GasiTGGdPl~~ieR~~ 97 (353)
T COG2108 36 GLCNRSCFYCPVSDERKGKDVIYANERP------------------VKSVEDIIEEAKLMDALGASITGGDPLLEIERTV 97 (353)
T ss_pred cccCCCcccCcCCHHhcCCcceeecccc------------------cCcHHHHHHHHHHhccccccccCCChHHHHHHHH
Q ss_pred HHHHhcCCeEEEEEEEEeeeccCCCCCCCcEEEEEEeccCCCCchHHHHHHHHHHHHhHHHHHHHHHHHHHhCCCCCCHH
Q 018376 121 ETARRFGMKIIPGVEISTIFCQRGSESEEPVHILAYYSSCGPSKYEELENFLANIRDGRFLRAKDMILKLNKLKLPLKWE 200 (357)
Q Consensus 121 ~~a~~~gi~vi~GiEis~~~~~~~~~~g~~vHiLgy~~d~~~~~~~~l~~~l~~i~~~R~~r~~~~i~~L~~~g~~i~~e 200 (357)
+.++. +.-.+ |..+|+=-|
T Consensus 98 ~~ir~----------LK~ef-------G~~fHiHLY-------------------------------------------- 116 (353)
T COG2108 98 EYIRL----------LKDEF-------GEDFHIHLY-------------------------------------------- 116 (353)
T ss_pred HHHHH----------HHHhh-------ccceeEEEe--------------------------------------------
Q ss_pred HHHHHhCCCCCCChHHHHHHHHHcCccccHHHHHHHHhhCCCCcccCCCCCCHHHHHHHHHHcCCeEEeeCC--CCCCCh
Q 018376 201 HVAKIAGKGVAPGRLHVARAMVEAGHVENLKQAFARYLYDGGPAYSTGSEPLAEVAVQLIHRTGGLAVLAHP--WALKNP 278 (357)
Q Consensus 201 ~v~~~a~~~~~~~~~hia~aLv~~g~~~~~~~~f~~yl~~~~~~yv~~~~~~~eevI~~I~~aGGvaVLAHP--~~~~~~ 278 (357)
.++..++ +++++..-.||===|=-|| +..+..
T Consensus 117 ---------------------------------------------T~g~~~~-~e~l~~L~eAGLDEIRfHp~~~~~~~~ 150 (353)
T COG2108 117 ---------------------------------------------TTGILAT-EEALKALAEAGLDEIRFHPPRPGSKSS 150 (353)
T ss_pred ---------------------------------------------eccccCC-HHHHHHHHhCCCCeEEecCCCcccccc
Q ss_pred HHHHHHHH---HcCCc-EEEeecCCCcHHH-HHHHHHHHhcCC
Q 018376 279 AAIIRKLK---DVGLH-GLEVYRSDGKLVD-VNFLEKIDNFLL 316 (357)
Q Consensus 279 ~~li~~l~---~~GlD-GIEv~~~~~~~~~-~~~~~lA~~~~L 316 (357)
+..++.++ ..|.| |+|+---.+..+. ..+.+++.++++
T Consensus 151 e~~i~~l~~A~~~g~dvG~EiPaipg~e~~i~e~~~~~~~~~~ 193 (353)
T COG2108 151 EKYIENLKIAKKYGMDVGVEIPAIPGEEEAILEFAKALDENGL 193 (353)
T ss_pred HHHHHHHHHHHHhCccceeecCCCcchHHHHHHHHHHHHhccc
Done!