BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 018377
(357 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3IKK|A Chain A, Crystal Structure Analysis Of Msp Domain
pdb|3IKK|B Chain B, Crystal Structure Analysis Of Msp Domain
Length = 127
Score = 70.5 bits (171), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 40/98 (40%), Positives = 59/98 (60%), Gaps = 2/98 (2%)
Query: 3 EELLDIQP-LELKFTFEVKKQSTCVIQLGNKSDQCVAFKVKTTSPKKYCVRPNVSIIKPK 61
E++L ++P ELKF T ++LGN +D+ V FKVKTT+P++YCVRPN II
Sbjct: 7 EQVLSLEPQHELKFRGPFTDVVTTNLKLGNPTDRNVCFKVKTTAPRRYCVRPNSGIIDAG 66
Query: 62 AISDFTVTMQAQRVAPPDLQCKDKFLIQGIVVPFGTSD 99
A + +V +Q P+ + K KF++Q + P TSD
Sbjct: 67 ASINVSVMLQPFDYD-PNEKSKHKFMVQSMFAPTDTSD 103
>pdb|2RR3|A Chain A, Solution Structure Of The Complex Between Human Vap-A Msp
Domain And Human Osbp Ffat Motif
Length = 130
Score = 68.2 bits (165), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 38/90 (42%), Positives = 52/90 (57%), Gaps = 1/90 (1%)
Query: 10 PLELKFTFEVKKQSTCVIQLGNKSDQCVAFKVKTTSPKKYCVRPNVSIIKPKAISDFTVT 69
P +LKF T ++L N SD+ V FKVKTT+P++YCVRPN II P + +V
Sbjct: 15 PTDLKFKGPFTDVVTTNLKLRNPSDRKVCFKVKTTAPRRYCVRPNSGIIDPGSTVTVSVM 74
Query: 70 MQAQRVAPPDLQCKDKFLIQGIVVPFGTSD 99
+Q P+ + K KF++Q I P TSD
Sbjct: 75 LQPFDYD-PNEKSKHKFMVQTIFAPPNTSD 103
>pdb|2CRI|A Chain A, Solution Structure Of The Msp Domain Of Mouse Vamp-
Associated Proteina
Length = 147
Score = 67.8 bits (164), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 38/90 (42%), Positives = 52/90 (57%), Gaps = 1/90 (1%)
Query: 10 PLELKFTFEVKKQSTCVIQLGNKSDQCVAFKVKTTSPKKYCVRPNVSIIKPKAISDFTVT 69
P +LKF T ++L N SD+ V FKVKTT+P++YCVRPN II P +I +V
Sbjct: 20 PSDLKFKGPFTDVVTTNLKLQNPSDRKVCFKVKTTAPRRYCVRPNSGIIDPGSIVTVSVM 79
Query: 70 MQAQRVAPPDLQCKDKFLIQGIVVPFGTSD 99
+Q P+ + K KF++Q I P SD
Sbjct: 80 LQPFDYD-PNEKSKHKFMVQTIFAPPNISD 108
>pdb|1Z9O|A Chain A, 1.9 Angstrom Crystal Structure Of The Rat Vap-a Msp
Homology Domain In Complex With The Rat Orp1 Ffat Motif
pdb|1Z9O|B Chain B, 1.9 Angstrom Crystal Structure Of The Rat Vap-a Msp
Homology Domain In Complex With The Rat Orp1 Ffat Motif
pdb|1Z9O|C Chain C, 1.9 Angstrom Crystal Structure Of The Rat Vap-a Msp
Homology Domain In Complex With The Rat Orp1 Ffat Motif
pdb|1Z9O|D Chain D, 1.9 Angstrom Crystal Structure Of The Rat Vap-a Msp
Homology Domain In Complex With The Rat Orp1 Ffat Motif
pdb|1Z9O|E Chain E, 1.9 Angstrom Crystal Structure Of The Rat Vap-a Msp
Homology Domain In Complex With The Rat Orp1 Ffat Motif
pdb|1Z9O|F Chain F, 1.9 Angstrom Crystal Structure Of The Rat Vap-a Msp
Homology Domain In Complex With The Rat Orp1 Ffat Motif
Length = 128
Score = 66.6 bits (161), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 37/90 (41%), Positives = 52/90 (57%), Gaps = 1/90 (1%)
Query: 10 PLELKFTFEVKKQSTCVIQLGNKSDQCVAFKVKTTSPKKYCVRPNVSIIKPKAISDFTVT 69
P +LKF T ++L N SD+ V FKVKTT+P++YCVRPN +I P +I +V
Sbjct: 16 PSDLKFKGPFTDVVTTNLKLQNPSDRKVCFKVKTTAPRRYCVRPNSGVIDPGSIVTVSVM 75
Query: 70 MQAQRVAPPDLQCKDKFLIQGIVVPFGTSD 99
+Q P+ + K KF++Q I P SD
Sbjct: 76 LQPFDYD-PNEKSKHKFMVQTIFAPPNISD 104
>pdb|1Z9L|A Chain A, 1.7 Angstrom Crystal Structure Of The Rat Vap-A Msp
Homology Domain
Length = 128
Score = 65.1 bits (157), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 37/90 (41%), Positives = 51/90 (56%), Gaps = 1/90 (1%)
Query: 10 PLELKFTFEVKKQSTCVIQLGNKSDQCVAFKVKTTSPKKYCVRPNVSIIKPKAISDFTVT 69
P +LKF T ++L N SD+ V FKVKTT+P++YCVRPN +I P +I +V
Sbjct: 16 PSDLKFKGPFTDVVTTNLKLQNPSDRKVCFKVKTTAPRRYCVRPNSGVIDPGSIVTVSVX 75
Query: 70 MQAQRVAPPDLQCKDKFLIQGIVVPFGTSD 99
+Q P+ + K KF +Q I P SD
Sbjct: 76 LQPFDYD-PNEKSKHKFXVQTIFAPPNISD 104
>pdb|1WIC|A Chain A, Solution Structure Of The Msp Domain Of Riken Cdna
6030424e15
Length = 152
Score = 45.4 bits (106), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 31/85 (36%), Positives = 43/85 (50%), Gaps = 5/85 (5%)
Query: 5 LLDIQPLE-LKFTFEVKKQSTCVIQLGNKSDQCVAFKVKTTSPKKYCVRPNVSIIKPKAI 63
LL I P E L F + +I L N + VAFKV+TT+P+KY V+P+ S P A
Sbjct: 18 LLHISPAEELYFGSIESGEKKTLIVLTNVTKNIVAFKVRTTAPEKYRVKPSNSSCDPGAS 77
Query: 64 SDFTVTMQAQRVAPPDLQCKDKFLI 88
D V+ + +D+FLI
Sbjct: 78 IDIIVSPHGGLT----VSAQDRFLI 98
>pdb|3E5P|A Chain A, Crystal Structure Of Alanine Racemase From E.Faecalis
pdb|3E5P|B Chain B, Crystal Structure Of Alanine Racemase From E.Faecalis
pdb|3E5P|C Chain C, Crystal Structure Of Alanine Racemase From E.Faecalis
pdb|3E6E|A Chain A, Crystal Structure Of Alanine Racemase From E.Faecalis
Complex With Cycloserine
pdb|3E6E|B Chain B, Crystal Structure Of Alanine Racemase From E.Faecalis
Complex With Cycloserine
pdb|3E6E|C Chain C, Crystal Structure Of Alanine Racemase From E.Faecalis
Complex With Cycloserine
Length = 371
Score = 32.0 bits (71), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 27/111 (24%), Positives = 48/111 (43%), Gaps = 6/111 (5%)
Query: 80 LQCKDKFLIQGIVVPFGTSDEDITSDMFAKDSGKYVEEKKLRVILMSPPQSPVLLPRNGE 139
+Q +FL +GI F T+DE I + F K +G++ K + +L P+ +
Sbjct: 155 VQSHKEFLWEGIFTHFSTADE-IDTSYFEKQAGRF---KAVLAVLEELPRYVHVSNSATA 210
Query: 140 LKQDSSPETSLQKDRALSGVENIPPGDGVAANAEVFETAKFADELTETKDL 190
L P ++ A+ G+ P G+ +A + + + EL K L
Sbjct: 211 LWHPDVPGNMIRYGVAMYGLN--PSGNKLAPSYALKPALRLTSELIHVKRL 259
>pdb|1M1S|A Chain A, Structure Of Wr4, A C.Elegans Msp Family Member
Length = 116
Score = 30.8 bits (68), Expect = 1.1, Method: Composition-based stats.
Identities = 22/69 (31%), Positives = 35/69 (50%), Gaps = 6/69 (8%)
Query: 31 NKSDQCVAFKVKTTSPKKYCVRPNVSIIKPKAISDFTVTMQAQRVAPPDLQCKDKFLIQG 90
++SD +AFKVK+++ + Y VRP + K S + + PP +DK +IQ
Sbjct: 33 SESDSRLAFKVKSSNNEHYRVRPVYGFVDAKGKSKLDIN---RLPGPPK---EDKIVIQY 86
Query: 91 IVVPFGTSD 99
VP +D
Sbjct: 87 AEVPAEETD 95
>pdb|1TLL|A Chain A, Crystal Structure Of Rat Neuronal Nitric-Oxide Synthase
Reductase Module At 2.3 A Resolution.
pdb|1TLL|B Chain B, Crystal Structure Of Rat Neuronal Nitric-Oxide Synthase
Reductase Module At 2.3 A Resolution
Length = 688
Score = 29.6 bits (65), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 26/47 (55%), Gaps = 6/47 (12%)
Query: 199 RDESRAAKDVQMFGTT----NVTNKLREAKDVQTFESSKDIDELISA 241
RD++R +D+ FG T VTN+LR ES KD DE+ S+
Sbjct: 644 RDDNRYHEDI--FGVTLRTYEVTNRLRSESIAFIEESKKDADEVFSS 688
>pdb|1MSP|A Chain A, Major Sperm Protein, Alpha Isoform (Recombinant), Ph 4.6
pdb|1MSP|B Chain B, Major Sperm Protein, Alpha Isoform (Recombinant), Ph 4.6
pdb|3MSP|A Chain A, Motile Major Sperm Protein (Msp) Of Ascaris Suum, Nmr, 20
Structures
pdb|3MSP|B Chain B, Motile Major Sperm Protein (Msp) Of Ascaris Suum, Nmr, 20
Structures
Length = 126
Score = 28.9 bits (63), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 21/94 (22%), Positives = 41/94 (43%), Gaps = 2/94 (2%)
Query: 6 LDIQPLE-LKFTFEVKKQSTCVIQLGNKSDQCVAFKVKTTSPKKYCVRPNVSIIKPKAIS 64
++ QP + + F + T I++ N + + + +KTT+ ++ V P ++ PK
Sbjct: 9 INTQPSQKIVFNAPYDDKHTYHIKITNAGGRRIGWAIKTTNMRRLSVDPPCGVLDPKEKV 68
Query: 65 DFTVTMQAQRVAPPDLQCKDKFLIQGIVVPFGTS 98
V+ A DL D+ I+ P G +
Sbjct: 69 LMAVSCDTFNAATEDLN-NDRITIEWTNTPDGAA 101
>pdb|1X03|A Chain A, Crystal Structure Of Endophilin Bar Domain
Length = 252
Score = 27.7 bits (60), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 30/52 (57%), Gaps = 3/52 (5%)
Query: 250 AEDASELKPAKDILELKLAKDFEELKLKLNVMDSQLREAEHTIRKLMEARKL 301
E EL KD L++++ ++F + N+ D LRE +H ++KL E R+L
Sbjct: 123 GEAXRELSEVKDSLDIEVKQNF--IDPLQNLHDKDLREIQHHLKKL-EGRRL 171
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.315 0.131 0.359
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,832,619
Number of Sequences: 62578
Number of extensions: 399148
Number of successful extensions: 828
Number of sequences better than 100.0: 39
Number of HSP's better than 100.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 29
Number of HSP's that attempted gapping in prelim test: 813
Number of HSP's gapped (non-prelim): 42
length of query: 357
length of database: 14,973,337
effective HSP length: 100
effective length of query: 257
effective length of database: 8,715,537
effective search space: 2239893009
effective search space used: 2239893009
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 52 (24.6 bits)