Query 018377
Match_columns 357
No_of_seqs 214 out of 662
Neff 4.4
Searched_HMMs 46136
Date Fri Mar 29 08:30:38 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018377.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/018377hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0439 VAMP-associated protei 99.9 1.5E-25 3.3E-30 204.7 14.9 130 4-135 7-139 (218)
2 COG5066 SCS2 VAMP-associated p 99.9 2.1E-25 4.5E-30 206.5 12.3 120 6-127 3-123 (242)
3 PF00635 Motile_Sperm: MSP (Ma 99.9 6E-22 1.3E-26 161.1 13.0 104 6-110 2-107 (109)
4 PF14874 PapD-like: Flagellar- 98.4 6.1E-06 1.3E-10 66.9 11.3 70 4-73 2-74 (102)
5 PF00345 PapD_N: Pili and flag 96.3 0.053 1.1E-06 45.5 10.2 108 6-126 2-118 (122)
6 PRK10884 SH3 domain-containing 96.2 0.016 3.4E-07 54.6 7.2 72 277-348 119-191 (206)
7 PF14646 MYCBPAP: MYCBP-associ 91.5 1 2.2E-05 46.2 9.2 63 12-74 238-313 (426)
8 PRK09918 putative fimbrial cha 90.0 2.8 6E-05 39.8 10.0 107 6-128 26-137 (230)
9 PRK09926 putative chaperone pr 89.3 3.2 6.9E-05 39.8 9.9 114 5-127 26-149 (246)
10 PRK15249 fimbrial chaperone pr 88.8 3.4 7.4E-05 39.8 9.7 112 5-127 29-152 (253)
11 PF11614 FixG_C: IG-like fold 88.1 2.1 4.6E-05 35.8 7.0 53 23-75 33-87 (118)
12 PF14197 Cep57_CLD_2: Centroso 86.7 3.2 6.8E-05 32.9 6.7 49 272-320 8-63 (69)
13 PF07610 DUF1573: Protein of u 86.4 3.1 6.7E-05 29.8 6.0 43 27-70 2-45 (45)
14 PRK11385 putativi pili assembl 86.1 6 0.00013 38.0 9.6 109 5-127 27-147 (236)
15 PRK15246 fimbrial assembly cha 86.0 7.2 0.00016 37.3 10.1 113 5-127 11-133 (233)
16 PRK15295 fimbrial assembly cha 84.1 9.9 0.00022 36.1 10.0 110 5-127 20-136 (226)
17 PRK04406 hypothetical protein; 84.0 5.5 0.00012 32.0 7.0 50 273-322 8-57 (75)
18 PRK10884 SH3 domain-containing 83.3 4.6 9.9E-05 38.1 7.3 70 276-348 125-195 (206)
19 PF04102 SlyX: SlyX; InterPro 83.2 5.5 0.00012 31.2 6.6 49 275-323 3-51 (69)
20 PRK15299 fimbrial chaperone pr 82.6 12 0.00027 35.3 10.0 110 5-127 23-140 (227)
21 PRK15211 fimbrial chaperone pr 82.6 12 0.00026 35.7 10.0 109 6-127 24-138 (229)
22 PRK04325 hypothetical protein; 82.2 5.7 0.00012 31.7 6.5 51 272-322 5-55 (74)
23 PRK15208 long polar fimbrial c 82.2 13 0.00029 35.2 10.0 111 5-127 22-138 (228)
24 PF05957 DUF883: Bacterial pro 81.9 24 0.00052 28.7 10.2 21 329-349 72-92 (94)
25 PRK15290 lfpB fimbrial chapero 80.9 14 0.00031 35.6 9.9 110 6-127 39-156 (243)
26 PRK10132 hypothetical protein; 79.7 21 0.00046 30.6 9.5 22 328-349 84-105 (108)
27 PRK15192 fimbrial chaperone Bc 78.6 17 0.00037 34.9 9.5 105 6-127 24-142 (234)
28 PRK10404 hypothetical protein; 78.1 26 0.00056 29.7 9.4 21 329-349 79-99 (101)
29 PRK00846 hypothetical protein; 77.5 11 0.00023 30.8 6.6 50 273-322 10-59 (77)
30 PRK15195 fimbrial chaperone pr 76.9 25 0.00054 33.5 10.1 111 6-127 27-143 (229)
31 PRK02119 hypothetical protein; 76.6 13 0.00028 29.7 6.8 49 274-322 7-55 (73)
32 PRK15188 fimbrial chaperone pr 75.8 26 0.00056 33.6 9.9 110 6-127 29-144 (228)
33 PRK15254 fimbrial chaperone pr 75.8 28 0.0006 33.6 10.2 109 5-127 17-133 (239)
34 PRK02793 phi X174 lysis protei 75.5 13 0.00028 29.6 6.5 50 274-323 6-55 (72)
35 PRK00295 hypothetical protein; 75.2 13 0.00028 29.3 6.4 46 277-322 6-51 (68)
36 PRK00736 hypothetical protein; 74.7 13 0.00029 29.2 6.4 46 277-322 6-51 (68)
37 COG3121 FimC P pilus assembly 74.6 43 0.00094 31.9 11.1 111 6-128 29-146 (235)
38 PF06280 DUF1034: Fn3-like dom 74.3 8.9 0.00019 31.8 5.7 55 20-74 7-82 (112)
39 PF05064 Nsp1_C: Nsp1-like C-t 69.7 13 0.00029 31.8 5.8 67 253-319 20-86 (116)
40 PF06156 DUF972: Protein of un 69.7 19 0.00042 30.8 6.7 47 271-317 10-56 (107)
41 PF07798 DUF1640: Protein of u 69.4 34 0.00073 31.1 8.7 40 307-347 134-173 (177)
42 COG3883 Uncharacterized protei 68.3 16 0.00036 36.0 6.8 69 253-321 29-97 (265)
43 PRK15218 fimbrial chaperone pr 68.0 83 0.0018 30.1 11.4 110 6-127 20-139 (226)
44 TIGR03079 CH4_NH3mon_ox_B meth 67.5 14 0.0003 38.3 6.3 55 19-73 280-355 (399)
45 PF10779 XhlA: Haemolysin XhlA 67.2 51 0.0011 25.8 8.2 66 275-349 5-71 (71)
46 smart00809 Alpha_adaptinC2 Ada 65.9 48 0.001 26.6 8.1 53 20-72 17-73 (104)
47 PRK15224 pili assembly chapero 65.1 93 0.002 30.0 11.2 81 7-95 31-118 (237)
48 PRK15233 putative fimbrial cha 65.0 1.1E+02 0.0023 29.9 11.6 80 8-95 44-130 (246)
49 PF10633 NPCBM_assoc: NPCBM-as 64.8 12 0.00026 29.1 4.2 57 20-76 4-64 (78)
50 PF11166 DUF2951: Protein of u 64.8 34 0.00073 29.2 7.1 22 328-349 68-89 (98)
51 PF10498 IFT57: Intra-flagella 63.3 32 0.0007 35.2 8.1 65 263-332 267-331 (359)
52 PF05546 She9_MDM33: She9 / Md 63.0 24 0.00052 33.7 6.6 53 269-321 32-85 (207)
53 PRK15253 putative fimbrial ass 61.9 1.2E+02 0.0027 29.2 11.4 109 7-127 36-154 (242)
54 PRK15274 putative periplasmic 61.8 1.2E+02 0.0027 29.6 11.5 107 7-127 29-143 (257)
55 PRK13169 DNA replication intia 60.3 37 0.00079 29.4 6.7 48 270-317 9-56 (110)
56 PF10473 CENP-F_leu_zip: Leuci 57.9 60 0.0013 29.2 7.9 53 267-319 29-81 (140)
57 PF06005 DUF904: Protein of un 56.2 43 0.00093 26.8 6.0 42 278-319 6-54 (72)
58 PF13544 N_methyl_2: Type IV p 56.0 11 0.00023 25.4 2.2 20 324-343 11-30 (31)
59 KOG0995 Centromere-associated 55.4 41 0.00089 36.6 7.5 63 265-331 269-331 (581)
60 PF06005 DUF904: Protein of un 55.1 68 0.0015 25.6 7.0 28 292-319 34-61 (72)
61 PRK15285 putative fimbrial cha 55.0 2E+02 0.0044 27.9 11.6 106 8-127 29-142 (250)
62 PF06156 DUF972: Protein of un 54.7 77 0.0017 27.1 7.7 50 273-322 5-54 (107)
63 PF00927 Transglut_C: Transglu 52.8 48 0.001 27.1 6.0 57 19-75 13-79 (107)
64 PF03962 Mnd1: Mnd1 family; I 52.3 36 0.00078 31.6 5.8 56 265-321 72-127 (188)
65 PF02883 Alpha_adaptinC2: Adap 51.8 56 0.0012 26.8 6.4 54 19-72 22-79 (115)
66 PF12325 TMF_TATA_bd: TATA ele 51.5 64 0.0014 28.2 6.9 50 270-319 31-83 (120)
67 PF10482 CtIP_N: Tumour-suppre 51.1 40 0.00087 29.7 5.4 39 275-313 81-119 (120)
68 PF11120 DUF2636: Protein of u 50.2 12 0.00025 29.5 1.9 19 333-351 9-27 (62)
69 PF02753 PapD_C: Pili assembly 49.7 15 0.00033 27.7 2.5 43 27-70 1-45 (68)
70 PF06548 Kinesin-related: Kine 49.6 50 0.0011 35.1 6.9 34 288-321 429-472 (488)
71 PF06030 DUF916: Bacterial pro 49.3 1.7E+02 0.0038 25.2 9.2 29 14-42 20-48 (121)
72 PRK15422 septal ring assembly 49.1 64 0.0014 26.6 6.0 46 270-315 19-64 (79)
73 PRK13169 DNA replication intia 48.7 80 0.0017 27.3 6.9 51 272-322 4-54 (110)
74 PF13870 DUF4201: Domain of un 48.2 1.1E+02 0.0023 27.6 8.1 65 264-332 79-143 (177)
75 PF05506 DUF756: Domain of unk 48.0 62 0.0013 25.8 5.9 44 24-70 21-65 (89)
76 PF12777 MT: Microtubule-bindi 47.4 64 0.0014 32.3 7.1 54 268-321 227-280 (344)
77 PF11544 Spc42p: Spindle pole 46.6 97 0.0021 25.4 6.7 49 271-319 7-55 (76)
78 COG4317 Uncharacterized protei 46.2 15 0.00033 30.7 2.0 16 335-350 32-47 (93)
79 PF10205 KLRAQ: Predicted coil 45.8 1E+02 0.0022 26.5 7.0 41 276-316 26-73 (102)
80 COG2991 Uncharacterized protei 45.5 17 0.00036 29.7 2.1 22 329-350 4-26 (77)
81 PF08912 Rho_Binding: Rho Bind 45.4 60 0.0013 26.1 5.2 47 267-313 1-51 (69)
82 PF11611 DUF4352: Domain of un 45.3 92 0.002 25.3 6.7 55 19-73 34-102 (123)
83 smart00340 HALZ homeobox assoc 44.2 42 0.0009 24.8 3.8 19 301-319 16-34 (44)
84 PF11027 DUF2615: Protein of u 43.8 25 0.00053 30.2 3.0 27 326-352 50-76 (103)
85 KOG0972 Huntingtin interacting 43.2 82 0.0018 32.1 7.0 58 270-332 281-338 (384)
86 PF15188 CCDC-167: Coiled-coil 42.8 94 0.002 25.9 6.2 50 269-322 19-68 (85)
87 PF11621 Sbi-IV: C3 binding do 42.4 36 0.00079 26.9 3.5 37 282-318 11-60 (69)
88 PRK04778 septation ring format 42.2 1.9E+02 0.0042 30.9 10.1 88 264-352 378-465 (569)
89 PRK13673 hypothetical protein; 41.4 34 0.00073 30.0 3.6 36 311-349 77-112 (118)
90 PF09738 DUF2051: Double stran 39.6 60 0.0013 32.6 5.5 43 272-314 80-122 (302)
91 PF04977 DivIC: Septum formati 39.3 78 0.0017 24.1 5.1 27 290-316 24-50 (80)
92 COG4575 ElaB Uncharacterized c 38.7 1.8E+02 0.004 25.1 7.5 21 329-349 82-102 (104)
93 PF13870 DUF4201: Domain of un 38.5 75 0.0016 28.6 5.5 39 272-310 94-132 (177)
94 PF08826 DMPK_coil: DMPK coile 38.5 1.4E+02 0.003 23.3 6.2 35 277-318 26-60 (61)
95 PLN03188 kinesin-12 family pro 37.8 83 0.0018 37.4 6.9 33 288-320 1199-1241(1320)
96 PF02183 HALZ: Homeobox associ 37.5 1.5E+02 0.0032 21.7 5.9 30 291-320 13-42 (45)
97 PF11559 ADIP: Afadin- and alp 36.4 1.9E+02 0.004 25.3 7.6 54 265-318 69-122 (151)
98 COG4467 Regulator of replicati 36.4 1.4E+02 0.003 26.2 6.5 42 278-319 10-51 (114)
99 PF04744 Monooxygenase_B: Mono 36.2 1.9E+02 0.0041 30.2 8.5 65 6-72 249-335 (381)
100 KOG3156 Uncharacterized membra 36.0 76 0.0016 30.7 5.3 40 307-347 177-216 (220)
101 PF06160 EzrA: Septation ring 35.6 2.6E+02 0.0056 30.1 9.8 88 264-352 374-461 (560)
102 PF08606 Prp19: Prp19/Pso4-lik 35.5 95 0.0021 25.1 5.0 25 286-310 46-70 (70)
103 PF02687 FtsX: FtsX-like perme 35.4 56 0.0012 25.7 3.8 40 308-347 25-64 (121)
104 PF11221 Med21: Subunit 21 of 34.5 1.8E+02 0.0038 25.7 7.1 54 266-319 80-133 (144)
105 TIGR02745 ccoG_rdxA_fixG cytoc 33.9 2.3E+02 0.005 29.8 8.9 68 22-91 347-416 (434)
106 PF09726 Macoilin: Transmembra 33.4 97 0.0021 34.5 6.4 57 264-320 420-476 (697)
107 PF03173 CHB_HEX: Putative car 33.0 50 0.0011 30.2 3.5 34 39-72 69-104 (164)
108 PF02960 K1: K1 glycoprotein; 33.0 35 0.00077 30.0 2.4 17 331-347 71-87 (130)
109 PF04728 LPP: Lipoprotein leuc 32.8 2E+02 0.0043 22.3 6.1 41 264-304 5-45 (56)
110 PF00769 ERM: Ezrin/radixin/mo 32.6 1E+02 0.0023 29.7 5.8 42 278-319 77-118 (246)
111 PRK03992 proteasome-activating 32.2 1.2E+02 0.0025 30.9 6.3 46 273-318 5-50 (389)
112 PF06305 DUF1049: Protein of u 32.2 41 0.00089 25.3 2.4 21 329-349 18-39 (68)
113 PF06667 PspB: Phage shock pro 32.0 51 0.0011 26.8 3.0 20 332-351 12-31 (75)
114 TIGR03185 DNA_S_dndD DNA sulfu 31.9 1.7E+02 0.0038 31.7 7.9 65 270-334 224-298 (650)
115 PRK15422 septal ring assembly 31.8 1.4E+02 0.003 24.7 5.4 38 278-315 6-43 (79)
116 KOG2077 JNK/SAPK-associated pr 31.6 1.5E+02 0.0032 32.9 7.1 68 255-322 315-382 (832)
117 PF06305 DUF1049: Protein of u 31.5 62 0.0013 24.3 3.3 26 292-317 43-68 (68)
118 PF04111 APG6: Autophagy prote 31.4 1.7E+02 0.0037 29.2 7.2 7 304-310 99-105 (314)
119 PRK15308 putative fimbrial pro 31.1 2.6E+02 0.0056 27.1 8.1 84 4-95 16-117 (234)
120 KOG3119 Basic region leucine z 30.9 2.3E+02 0.005 27.7 7.9 45 278-322 210-254 (269)
121 PF10031 DUF2273: Small integr 30.6 41 0.00088 25.2 2.1 22 328-349 28-50 (51)
122 COG5407 SEC63 Preprotein trans 29.1 35 0.00075 36.6 2.0 21 329-349 193-213 (610)
123 PF04420 CHD5: CHD5-like prote 28.4 85 0.0018 28.3 4.1 50 265-323 43-92 (161)
124 PF12690 BsuPI: Intracellular 28.1 2.4E+02 0.0053 22.6 6.4 20 24-43 3-22 (82)
125 PF08317 Spc7: Spc7 kinetochor 28.0 2.9E+02 0.0063 27.5 8.2 46 274-319 221-266 (325)
126 PF03962 Mnd1: Mnd1 family; I 28.0 1.2E+02 0.0025 28.2 5.1 53 269-322 69-121 (188)
127 PF06072 Herpes_US9: Alphaherp 27.9 36 0.00079 26.7 1.4 14 336-349 44-57 (60)
128 COG3121 FimC P pilus assembly 27.8 1.5E+02 0.0033 28.3 5.9 44 25-70 165-210 (235)
129 PF12325 TMF_TATA_bd: TATA ele 27.7 2.6E+02 0.0057 24.4 6.9 47 271-317 18-64 (120)
130 COG3074 Uncharacterized protei 27.5 1.9E+02 0.0042 23.6 5.5 39 280-318 8-53 (79)
131 PF10473 CENP-F_leu_zip: Leuci 27.2 3.2E+02 0.007 24.6 7.5 55 265-319 41-95 (140)
132 PF07926 TPR_MLP1_2: TPR/MLP1/ 27.0 3.5E+02 0.0077 23.3 7.6 30 291-320 85-114 (132)
133 KOG0554 Asparaginyl-tRNA synth 26.6 30 0.00065 36.3 1.0 44 294-339 378-424 (446)
134 TIGR02532 IV_pilin_GFxxxE prep 26.4 89 0.0019 20.1 2.8 22 326-347 1-23 (26)
135 PF05008 V-SNARE: Vesicle tran 26.1 1.9E+02 0.004 22.4 5.2 45 273-317 22-67 (79)
136 smart00637 CBD_II CBD_II domai 25.8 2.7E+02 0.0059 22.1 6.3 47 24-70 9-75 (92)
137 PF08112 ATP-synt_E_2: ATP syn 25.7 2.3E+02 0.005 21.9 5.3 37 281-320 16-53 (56)
138 PF13815 Dzip-like_N: Iguana/D 25.6 1.9E+02 0.0041 24.6 5.6 35 285-319 82-116 (118)
139 TIGR03592 yidC_oxa1_cterm memb 25.5 3.3E+02 0.0072 24.6 7.5 32 289-323 35-66 (181)
140 PF08838 DUF1811: Protein of u 25.2 88 0.0019 27.0 3.4 44 306-350 9-52 (102)
141 PTZ00454 26S protease regulato 25.2 1.9E+02 0.004 29.8 6.4 41 278-318 24-64 (398)
142 PF13473 Cupredoxin_1: Cupredo 25.1 3.6E+02 0.0078 21.8 7.0 53 7-71 31-83 (104)
143 KOG3202 SNARE protein TLG1/Syn 24.9 5.7E+02 0.012 24.9 9.3 22 327-348 213-234 (235)
144 PRK01844 hypothetical protein; 24.7 52 0.0011 26.7 1.8 20 329-348 5-24 (72)
145 PF01618 MotA_ExbB: MotA/TolQ/ 24.6 1.5E+02 0.0033 25.5 4.9 16 333-348 64-79 (139)
146 PF03672 UPF0154: Uncharacteri 24.6 60 0.0013 25.7 2.1 16 333-348 2-17 (64)
147 PF15035 Rootletin: Ciliary ro 24.3 2.7E+02 0.0059 25.8 6.8 35 280-314 85-119 (182)
148 KOG4657 Uncharacterized conser 24.1 3.5E+02 0.0075 26.6 7.5 53 291-349 80-132 (246)
149 KOG2196 Nuclear porin [Nuclear 23.5 1.7E+02 0.0037 28.9 5.4 67 253-319 76-142 (254)
150 PRK00523 hypothetical protein; 23.5 60 0.0013 26.3 2.0 21 328-348 5-25 (72)
151 PF13205 Big_5: Bacterial Ig-l 23.4 3.7E+02 0.008 21.1 6.9 57 12-71 26-85 (107)
152 PF02060 ISK_Channel: Slow vol 23.4 72 0.0016 28.5 2.6 21 327-347 40-66 (129)
153 PF03904 DUF334: Domain of unk 23.1 3.3E+02 0.007 26.7 7.2 42 288-334 118-159 (230)
154 PHA02562 46 endonuclease subun 23.0 2.4E+02 0.0053 29.3 6.9 16 301-316 355-370 (562)
155 PF04576 Zein-binding: Zein-bi 23.0 2.3E+02 0.005 24.1 5.4 32 272-303 20-51 (94)
156 PF09738 DUF2051: Double stran 22.8 2.6E+02 0.0056 28.2 6.7 50 271-320 114-163 (302)
157 PRK01026 tetrahydromethanopter 22.6 1.1E+02 0.0023 25.3 3.2 25 268-292 14-38 (77)
158 PF07334 IFP_35_N: Interferon- 22.3 1.4E+02 0.0031 24.4 3.9 29 291-319 1-29 (76)
159 PF03904 DUF334: Domain of unk 22.2 3.3E+02 0.0072 26.6 7.0 45 303-347 119-165 (230)
160 PF13851 GAS: Growth-arrest sp 21.8 4.6E+02 0.0099 24.5 7.8 53 270-322 80-132 (201)
161 KOG3313 Molecular chaperone Pr 21.8 1.5E+02 0.0032 28.1 4.4 40 280-322 121-160 (187)
162 PF04888 SseC: Secretion syste 21.8 3.9E+02 0.0084 25.9 7.7 57 287-346 19-75 (306)
163 PF13815 Dzip-like_N: Iguana/D 21.7 2.7E+02 0.0058 23.7 5.8 37 277-313 81-117 (118)
164 COG5547 Small integral membran 21.7 75 0.0016 25.0 2.1 21 330-350 31-51 (62)
165 PHA03029 hypothetical protein; 21.5 46 0.001 27.5 1.0 18 335-353 19-36 (92)
166 PF13851 GAS: Growth-arrest sp 21.5 4.4E+02 0.0094 24.7 7.6 51 266-316 31-81 (201)
167 PF10186 Atg14: UV radiation r 21.5 3.5E+02 0.0075 25.4 7.1 10 340-349 197-206 (302)
168 PF13234 rRNA_proc-arch: rRNA- 21.5 61 0.0013 30.9 2.0 51 271-321 216-266 (268)
169 PF07235 DUF1427: Protein of u 21.4 47 0.001 28.0 1.0 15 335-349 31-45 (90)
170 PF04678 DUF607: Protein of un 21.3 5.4E+02 0.012 23.5 8.1 14 301-314 71-84 (180)
171 PF11668 Gp_UL130: HCMV glycop 21.2 2.2E+02 0.0047 26.3 5.2 44 12-55 101-154 (156)
172 COG1340 Uncharacterized archae 21.2 3.5E+02 0.0076 27.3 7.2 51 273-323 52-102 (294)
173 KOG0978 E3 ubiquitin ligase in 21.0 2.9E+02 0.0064 31.0 7.2 56 267-322 564-619 (698)
174 PF00553 CBM_2: Cellulose bind 21.0 2.2E+02 0.0048 23.3 5.0 51 23-73 15-85 (101)
175 PF10151 DUF2359: Uncharacteri 21.0 3.7E+02 0.0079 28.8 7.7 79 264-353 202-287 (469)
176 PF09753 Use1: Membrane fusion 21.0 6.7E+02 0.014 23.9 8.9 17 306-322 208-224 (251)
177 TIGR01149 mtrG N5-methyltetrah 21.0 1.2E+02 0.0027 24.5 3.2 24 268-291 11-34 (70)
178 PF13863 DUF4200: Domain of un 21.0 4.9E+02 0.011 21.6 7.5 56 267-322 44-99 (126)
179 KOG4005 Transcription factor X 20.9 2.9E+02 0.0062 27.5 6.4 35 285-319 92-140 (292)
180 PF14283 DUF4366: Domain of un 20.8 28 0.00062 33.2 -0.4 24 325-349 158-181 (218)
181 KOG0977 Nuclear envelope prote 20.8 2.5E+02 0.0055 30.6 6.6 48 271-318 143-190 (546)
182 TIGR02231 conserved hypothetic 20.5 2.4E+02 0.0052 29.7 6.3 47 272-318 127-173 (525)
183 PRK09413 IS2 repressor TnpA; R 20.3 2.5E+02 0.0053 23.8 5.2 33 288-320 76-108 (121)
184 PF08702 Fib_alpha: Fibrinogen 20.3 3.6E+02 0.0078 24.1 6.5 41 263-303 30-70 (146)
185 TIGR02209 ftsL_broad cell divi 20.2 2.8E+02 0.006 21.6 5.2 32 286-317 27-58 (85)
186 PF02344 Myc-LZ: Myc leucine z 20.2 2.4E+02 0.0053 19.6 4.1 26 293-318 4-29 (32)
187 COG3086 RseC Positive regulato 20.1 85 0.0018 28.8 2.4 23 326-348 98-120 (150)
188 TIGR03007 pepcterm_ChnLen poly 20.1 9.3E+02 0.02 24.8 10.4 15 332-346 415-429 (498)
189 PF03302 VSP: Giardia variant- 20.0 62 0.0013 33.3 1.8 24 327-350 370-394 (397)
190 TIGR03510 XapX XapX domain. Th 20.0 93 0.002 23.4 2.3 20 331-350 27-46 (49)
191 PF03961 DUF342: Protein of un 20.0 3.6E+02 0.0079 27.9 7.4 30 290-319 375-404 (451)
No 1
>KOG0439 consensus VAMP-associated protein involved in inositol metabolism [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.93 E-value=1.5e-25 Score=204.68 Aligned_cols=130 Identities=38% Similarity=0.655 Sum_probs=116.6
Q ss_pred CCeEEeC-CeeEEeccCCceeEEEEEEEcCCCCeEEEEEeeCCCCcEEEeCCcceeCCCCeEEEEEEeccCCCCCCCCCC
Q 018377 4 ELLDIQP-LELKFTFEVKKQSTCVIQLGNKSDQCVAFKVKTTSPKKYCVRPNVSIIKPKAISDFTVTMQAQRVAPPDLQC 82 (357)
Q Consensus 4 ~LL~I~P-~EL~F~~e~~kq~sc~LtLtN~Sd~~VAFKVKTTsPkkY~VRPn~GvI~P~ss~~V~VTmqa~~e~P~d~q~ 82 (357)
.+|.|+| .+|.|.++++++.+|.|+|+|++++++|||||||+|++||||||.|+|.||++++|.|.+|+....|.|++|
T Consensus 7 ~~l~i~P~~~l~F~~~~~~~~~~~l~l~N~t~~~vaFKvktT~p~~y~VrP~~G~i~p~~t~~i~v~~q~~~~~P~d~~~ 86 (218)
T KOG0439|consen 7 SLLEIEPSDELVFPLPLNEQVKCSLTLKNPTKLRVAFKVKTTAPKLYCVRPNGGVIDPGSTVEIEVTHQPFEKSPPDFKS 86 (218)
T ss_pred CccccCCCceEEeccCCCceEEEEEEEecCCCCceEEEEEcCCCCeEEEcCCcceECCCCcEEEEEEeccCccCchhhcc
Confidence 6899999 689999999999999999999999999999999999999999999999999999999999998888999999
Q ss_pred CceEEEEEEEeCCCCCccchhhhhhcccC--CCceeEEEeEEEEeCCCCCCCcCC
Q 018377 83 KDKFLIQGIVVPFGTSDEDITSDMFAKDS--GKYVEEKKLRVILMSPPQSPVLLP 135 (357)
Q Consensus 83 kDKFLVQSv~v~~g~t~~di~~e~Fkk~~--~~~V~E~KLrV~fv~p~~p~~~~~ 135 (357)
+|||+||++.++.+ +..++ .+.|.... +..+.+.+++|.|+.+..++....
T Consensus 87 r~kF~v~~~~~~~~-~~~~~-~~~~~~~k~~~~~~~~~k~~~~~~~~~~~~~~~~ 139 (218)
T KOG0439|consen 87 RHKFLIQSLKAPPP-TTRDV-VDLWKFQKETPKESFETKLRVVFVAPTETDSVVA 139 (218)
T ss_pred cceEEEEEEecCCc-cccch-hhhccccccccccccceeeEEEeeCCCCCccccc
Confidence 99999999999976 23333 46777666 889999999999998887755543
No 2
>COG5066 SCS2 VAMP-associated protein involved in inositol metabolism [Intracellular trafficking and secretion]
Probab=99.93 E-value=2.1e-25 Score=206.48 Aligned_cols=120 Identities=35% Similarity=0.622 Sum_probs=109.7
Q ss_pred eEEeCCeeEEeccCCceeEEEEEEEcCCCCeEEEEEeeCCCCcEEEeCCcceeCCCCeEEEEEEeccCCCCC-CCCCCCc
Q 018377 6 LDIQPLELKFTFEVKKQSTCVIQLGNKSDQCVAFKVKTTSPKKYCVRPNVSIIKPKAISDFTVTMQAQRVAP-PDLQCKD 84 (357)
Q Consensus 6 L~I~P~EL~F~~e~~kq~sc~LtLtN~Sd~~VAFKVKTTsPkkY~VRPn~GvI~P~ss~~V~VTmqa~~e~P-~d~q~kD 84 (357)
+.|+|. +.|..++..+.+|.+-|.|++.++|+||||||+|+.||||||.|+|.|++++.|.|++|+.++.| +|.+|+|
T Consensus 3 veisp~-~~fy~Plt~~ske~~sv~NnspepvgfKVKTTaPK~YcVRPN~g~Iep~stv~VeVilq~l~eEpapdfKCrd 81 (242)
T COG5066 3 VEISPQ-TTFYVPLTNKSKEMFSVQNNSPEPVGFKVKTTAPKDYCVRPNMGLIEPMSTVEVEVILQGLTEEPAPDFKCRD 81 (242)
T ss_pred eEecCc-eEEecccccccceeeEeecCCCCceeEEeeccCCcceeEcCCCceeccCCeeEEEEEeeccccCCCCCccccc
Confidence 566665 45666999999999999999999999999999999999999999999999999999999999877 6999999
Q ss_pred eEEEEEEEeCCCCCccchhhhhhcccCCCceeEEEeEEEEeCC
Q 018377 85 KFLIQGIVVPFGTSDEDITSDMFAKDSGKYVEEKKLRVILMSP 127 (357)
Q Consensus 85 KFLVQSv~v~~g~t~~di~~e~Fkk~~~~~V~E~KLrV~fv~p 127 (357)
|||||++..+...+-.|+. ++|...++.-|.+.||+|+|...
T Consensus 82 KFLiqs~~~~~~l~g~d~a-d~wt~~sk~~i~~rkIrcvyse~ 123 (242)
T COG5066 82 KFLIQSYRFDWRLSGSDFA-DHWTSSSKKPIWTRKIRCVYSEE 123 (242)
T ss_pred eeEEEEeccChhhccchHH-HHHHhhccccchhhheeEEeecc
Confidence 9999999999988888885 89999988889999999999844
No 3
>PF00635 Motile_Sperm: MSP (Major sperm protein) domain; InterPro: IPR000535 Major sperm proteins (MSP) are central components in molecular interactions underlying sperm motility in Caenorhabditis elegans, whose sperm employ an amoebae-like crawling motion using a MSP-containing lamellipod, rather than the flagellar-based swimming motion associated with other sperm. These proteins oligomerise to form an extensive filament system that extends from sperm villipoda, along the leading edge of the pseudopod. About 30 MSP isoforms may exist in C. elegans. MSPs form a fibrous network, whereby MSP dimers form helical subfilaments that coil around one another to produce filaments, which in turn form supercoils to produce bundles. The crystal structure of MSP from C. elegans reveals an immunoglobulin (Ig)-like seven-stranded beta sandwich fold []. ; GO: 0005198 structural molecule activity; PDB: 1MSP_A 3MSP_B 2BVU_B 2MSP_C 1Z9O_F 1Z9L_A 3IKK_A 1WIC_A 2CRI_A 2RR3_A ....
Probab=99.88 E-value=6e-22 Score=161.11 Aligned_cols=104 Identities=38% Similarity=0.629 Sum_probs=84.1
Q ss_pred eEEeCC-eeEEeccCCceeEEEEEEEcCCCCeEEEEEeeCCCCcEEEeCCcceeCCCCeEEEEEEeccCCCCCCCCCCCc
Q 018377 6 LDIQPL-ELKFTFEVKKQSTCVIQLGNKSDQCVAFKVKTTSPKKYCVRPNVSIIKPKAISDFTVTMQAQRVAPPDLQCKD 84 (357)
Q Consensus 6 L~I~P~-EL~F~~e~~kq~sc~LtLtN~Sd~~VAFKVKTTsPkkY~VRPn~GvI~P~ss~~V~VTmqa~~e~P~d~q~kD 84 (357)
|.|+|. .|.|..+.++..+|.|+|+|+++++||||||||+|.+|+|+|+.|+|.||+++.|.|++++....+.. ..+|
T Consensus 2 l~v~P~~~i~F~~~~~~~~~~~l~l~N~s~~~i~fKiktt~~~~y~v~P~~G~i~p~~~~~i~I~~~~~~~~~~~-~~~d 80 (109)
T PF00635_consen 2 LSVEPSELIFFNAPFNKQQSCELTLTNPSDKPIAFKIKTTNPNRYRVKPSYGIIEPGESVEITITFQPFDFEPSN-KKKD 80 (109)
T ss_dssp CEEESSSEEEEESSTSS-EEEEEEEEE-SSSEEEEEEEES-TTTEEEESSEEEE-TTEEEEEEEEE-SSSTTTTS-TSSE
T ss_pred eEEeCCcceEEcCCCCceEEEEEEEECCCCCcEEEEEEcCCCceEEecCCCEEECCCCEEEEEEEEEecccCCCC-CCCC
Confidence 789997 79999999999999999999999999999999999999999999999999999999999998766533 2399
Q ss_pred eEEEEEEEeCCCCCc-cchhhhhhccc
Q 018377 85 KFLIQGIVVPFGTSD-EDITSDMFAKD 110 (357)
Q Consensus 85 KFLVQSv~v~~g~t~-~di~~e~Fkk~ 110 (357)
||+|+++.++++..+ .+....+|++.
T Consensus 81 kf~I~~~~~~~~~~~~~~~~~~~~~~~ 107 (109)
T PF00635_consen 81 KFLIQSIVVPDNATDPKKDFKQIWKNG 107 (109)
T ss_dssp EEEEEEEEE-TT-SSSHHHHHCCHHHS
T ss_pred EEEEEEEEcCCCccchhhhHHHHHhcc
Confidence 999999999876543 24445677654
No 4
>PF14874 PapD-like: Flagellar-associated PapD-like
Probab=98.37 E-value=6.1e-06 Score=66.86 Aligned_cols=70 Identities=23% Similarity=0.368 Sum_probs=61.1
Q ss_pred CCeEEeCCeeEEec-cCCceeEEEEEEEcCCCCeEEEEEeeCC--CCcEEEeCCcceeCCCCeEEEEEEeccC
Q 018377 4 ELLDIQPLELKFTF-EVKKQSTCVIQLGNKSDQCVAFKVKTTS--PKKYCVRPNVSIIKPKAISDFTVTMQAQ 73 (357)
Q Consensus 4 ~LL~I~P~EL~F~~-e~~kq~sc~LtLtN~Sd~~VAFKVKTTs--PkkY~VRPn~GvI~P~ss~~V~VTmqa~ 73 (357)
+.|.++|.+|.|-. ..+...+..++|+|.+..+..|+|+.-. ...|.|.|..|+|.||+++.+.|++.+.
T Consensus 2 P~l~v~P~~ldFG~v~~g~~~~~~v~l~N~s~~p~~f~v~~~~~~~~~~~v~~~~g~l~PG~~~~~~V~~~~~ 74 (102)
T PF14874_consen 2 PTLEVSPKELDFGNVFVGQTYSRTVTLTNTSSIPARFRVRQPESLSSFFSVEPPSGFLAPGESVELEVTFSPT 74 (102)
T ss_pred CEEEEeCCEEEeeEEccCCEEEEEEEEEECCCCCEEEEEEeCCcCCCCEEEECCCCEECCCCEEEEEEEEEeC
Confidence 46899999999976 3567778899999999999999997643 5689999999999999999999999853
No 5
>PF00345 PapD_N: Pili and flagellar-assembly chaperone, PapD N-terminal domain; InterPro: IPR016147 Most Gram-negative bacteria possess a supramolecular structure - the pili - on their surface, which mediates attachment to specific receptors. Many interactive subunits are required to assemble pili, but their assembly only takes place after translocation across the cytoplasmic membrane. Periplasmic chaperones assist pili assembly by binding to the subunits, thereby preventing premature aggregation [, ]. Pili chaperones are structurally, and possibly evolutionarily, related to the immunoglobulin superfamily [, ]: they contain two globular domains, with a topology identical to an immunoglobulin fold. This entry represents the N-terminal domain of pili assembly chaperone, and has a beta-sandwich fold consisting of seven strands in two sheets with a Greek key topology.; GO: 0007047 cellular cell wall organization, 0030288 outer membrane-bounded periplasmic space; PDB: 2CO6_B 2CO7_B 1L4I_B 3GFU_A 3F65_F 3F6L_A 3F6I_A 3GEW_B 3DSN_D 2OS7_B ....
Probab=96.27 E-value=0.053 Score=45.47 Aligned_cols=108 Identities=17% Similarity=0.236 Sum_probs=70.7
Q ss_pred eEEeCCeeEEeccCCceeEEEEEEEcCCCCeEEEEEeeCC---C------CcEEEeCCcceeCCCCeEEEEEEeccCCCC
Q 018377 6 LDIQPLELKFTFEVKKQSTCVIQLGNKSDQCVAFKVKTTS---P------KKYCVRPNVSIIKPKAISDFTVTMQAQRVA 76 (357)
Q Consensus 6 L~I~P~EL~F~~e~~kq~sc~LtLtN~Sd~~VAFKVKTTs---P------kkY~VRPn~GvI~P~ss~~V~VTmqa~~e~ 76 (357)
|.|.|..+.|.... ...+++|+|+++.++.+.+.-.. . .-+.|.|+.-.|+||+.-.|.| +. ....
T Consensus 2 i~i~~trii~~~~~---~~~~i~v~N~~~~~~~vq~~v~~~~~~~~~~~~~~~~vsPp~~~L~pg~~q~vRv-~~-~~~~ 76 (122)
T PF00345_consen 2 IQISPTRIIFNESQ---RSASITVTNNSDQPYLVQVWVYDQDDEDEDEPTDPFIVSPPIFRLEPGESQTVRV-YR-GSKL 76 (122)
T ss_dssp EEESSSEEEEETTS---SEEEEEEEESSSSEEEEEEEEEETTSTTSSSSSSSEEEESSEEEEETTEEEEEEE-EE-CSGS
T ss_pred EEEccEEEEEeCCC---CEEEEEEEcCCCCcEEEEEEEEcCCCcccccccccEEEeCCceEeCCCCcEEEEE-Ee-cCCC
Confidence 57889999998633 38899999999999999987654 1 2689999999999999999999 54 3333
Q ss_pred CCCCCCCceEEEEEEEeCCCCCccchhhhhhcccCCCceeEEEeEEEEeC
Q 018377 77 PPDLQCKDKFLIQGIVVPFGTSDEDITSDMFAKDSGKYVEEKKLRVILMS 126 (357)
Q Consensus 77 P~d~q~kDKFLVQSv~v~~g~t~~di~~e~Fkk~~~~~V~E~KLrV~fv~ 126 (357)
|.+ ...-|.+....++......+ .+..=.....+.++|.|-+
T Consensus 77 ~~~--~E~~yrl~~~~iP~~~~~~~------~~~~v~i~~~~~i~v~~rP 118 (122)
T PF00345_consen 77 PID--RESLYRLSFREIPPSEAENE------SKNGVQIALRYSIPVFYRP 118 (122)
T ss_dssp -SS--S-EEEEEEEEEEESCCTTSS------SSSEEEEEEEEEEEEEEEE
T ss_pred CCC--ceEEEEEEEEEEeccccccc------ccceEEEEEEEEEEEEECc
Confidence 333 23344555555554321100 1111124466777777653
No 6
>PRK10884 SH3 domain-containing protein; Provisional
Probab=96.18 E-value=0.016 Score=54.56 Aligned_cols=72 Identities=15% Similarity=0.215 Sum_probs=49.8
Q ss_pred hhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccCCc-chhhHHHHHHHHHHHHHhc
Q 018377 277 KLNVMDSQLREAEHTIRKLMEARKLATREKDMLKHELEVLRRKSNLRRVQVGF-PLLFVCMVALIGLVVGYLS 348 (357)
Q Consensus 277 k~~~~~~~~~ea~~~i~kl~ee~~~~~~~~~~L~~El~~lr~~~~~~~~~~gf-~l~fv~~v~llg~~lGyl~ 348 (357)
...+++.++.++...|..|.+|.....+|..++|+|++.|+.+......+.=+ -|++=..|+++|++||.++
T Consensus 119 ~~~~l~~~~~~~~~~~~~L~~~n~~L~~~l~~~~~~~~~l~~~~~~~~~~~~~~wf~~Gg~v~~~GlllGlil 191 (206)
T PRK10884 119 RTAEMQQKVAQSDSVINGLKEENQKLKNQLIVAQKKVDAANLQLDDKQRTIIMQWFMYGGGVAGIGLLLGLLL 191 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHHHHHHHHh
Confidence 34566677777888888899999988888888888888877654432111111 2344467888888888875
No 7
>PF14646 MYCBPAP: MYCBP-associated protein family
Probab=91.53 E-value=1 Score=46.16 Aligned_cols=63 Identities=11% Similarity=0.300 Sum_probs=53.3
Q ss_pred eeEEeccCCceeEEEEE-EEcCCCCeEEEEEeeCCC------------CcEEEeCCcceeCCCCeEEEEEEeccCC
Q 018377 12 ELKFTFEVKKQSTCVIQ-LGNKSDQCVAFKVKTTSP------------KKYCVRPNVSIIKPKAISDFTVTMQAQR 74 (357)
Q Consensus 12 EL~F~~e~~kq~sc~Lt-LtN~Sd~~VAFKVKTTsP------------kkY~VRPn~GvI~P~ss~~V~VTmqa~~ 74 (357)
.|.|....+......|. |.|....-|-|.++--.. ..|......|+|.||++..|.|++++..
T Consensus 238 ~l~Fe~~p~e~~~~~v~~l~N~Gt~~I~y~W~~~~~~~~~~~~~~~~~~~F~Fd~~~gvilPGe~~~~~~~F~s~~ 313 (426)
T PF14646_consen 238 RLTFECHPGERVSKEVVRLENNGTTAIYYSWRRVPFFKNFGSLFRAQDQRFYFDTSSGVILPGETRNFPFMFKSRK 313 (426)
T ss_pred EEEEEcccCceeeEEEEEEecCCceEEEEEEEecccccccchhccccCCeEEEeCCCCEECCCceEEEEEEEeCCC
Confidence 68888877766666666 999999999999875433 5688899999999999999999999864
No 8
>PRK09918 putative fimbrial chaperone protein; Provisional
Probab=89.98 E-value=2.8 Score=39.75 Aligned_cols=107 Identities=12% Similarity=0.101 Sum_probs=70.7
Q ss_pred eEEeCCeeEEeccCCceeEEEEEEEcCCCCeEEEEEeeCCC-----CcEEEeCCcceeCCCCeEEEEEEeccCCCCCCCC
Q 018377 6 LDIQPLELKFTFEVKKQSTCVIQLGNKSDQCVAFKVKTTSP-----KKYCVRPNVSIIKPKAISDFTVTMQAQRVAPPDL 80 (357)
Q Consensus 6 L~I~P~EL~F~~e~~kq~sc~LtLtN~Sd~~VAFKVKTTsP-----kkY~VRPn~GvI~P~ss~~V~VTmqa~~e~P~d~ 80 (357)
|.+.|..+.|.... ...+++|.|.++.++......... .-|.|.|+.-.|+||+...|.|.+.. ..|.|
T Consensus 26 v~l~~tRvi~~~~~---~~~si~v~N~~~~p~lvQ~wv~~~~~~~~~~fivtPPl~rl~pg~~q~vRii~~~--~lp~d- 99 (230)
T PRK09918 26 MVPETSVVIVEESD---GEGSINVKNTDSNPILLYTTLVDLPEDKSKLLLVTPPVARVEPGQSQQVRFILKS--GSPLN- 99 (230)
T ss_pred EEEccEEEEEECCC---CeEEEEEEcCCCCcEEEEEEEecCCCCCCCCEEEcCCeEEECCCCceEEEEEECC--CCCCC-
Confidence 66777888887644 478999999998877666644321 35999999999999999999998864 24433
Q ss_pred CCCceEEEEEEEeCCCCCccchhhhhhcccCCCceeEEEeEEEEeCCC
Q 018377 81 QCKDKFLIQGIVVPFGTSDEDITSDMFAKDSGKYVEEKKLRVILMSPP 128 (357)
Q Consensus 81 q~kDKFLVQSv~v~~g~t~~di~~e~Fkk~~~~~V~E~KLrV~fv~p~ 128 (357)
-.--|.+....+|+.... +..=......++++-|.+..
T Consensus 100 -rEs~f~l~v~~IP~~~~~---------~~~l~ia~r~~iklfyRP~~ 137 (230)
T PRK09918 100 -TEHLLRVSFEGVPPKPGG---------KNKVVMPIRQDLPVLIQPAA 137 (230)
T ss_pred -eeEEEEEEEEEcCCCCCC---------CCEEEEEEEeEEEEEEeCCC
Confidence 122355555666642110 11112345667888776443
No 9
>PRK09926 putative chaperone protein EcpD; Provisional
Probab=89.30 E-value=3.2 Score=39.77 Aligned_cols=114 Identities=15% Similarity=0.216 Sum_probs=72.9
Q ss_pred CeEEeCCeeEEeccCCceeEEEEEEEcCCCCeEEEEEeeCCCC----------cEEEeCCcceeCCCCeEEEEEEeccCC
Q 018377 5 LLDIQPLELKFTFEVKKQSTCVIQLGNKSDQCVAFKVKTTSPK----------KYCVRPNVSIIKPKAISDFTVTMQAQR 74 (357)
Q Consensus 5 LL~I~P~EL~F~~e~~kq~sc~LtLtN~Sd~~VAFKVKTTsPk----------kY~VRPn~GvI~P~ss~~V~VTmqa~~ 74 (357)
-|.|+|..+.|.... ...+|+|.|.++.++.-.....+.+ -|.|.|+.--|+||+...|.|......
T Consensus 26 ~i~l~~TRvI~~~~~---~~~sv~l~N~~~~p~LvQ~Wvd~~~~~~~p~~~~~pfivtPPl~rl~p~~~q~lRIi~~~~~ 102 (246)
T PRK09926 26 DIVISGTRIIYKSDQ---KDVNVRLENKGNNPLLVQSWLDTGDDNAEPGSIKVPFTATPPVSRIDPKRGQTIKLMYTAST 102 (246)
T ss_pred eEEeCceEEEEeCCC---ceEEEEEEeCCCCcEEEEEEecCCCCccCccccCCCEEEcCCeEEECCCCccEEEEEeCCCC
Confidence 367888889998644 4789999999998877766554321 399999999999999999999987532
Q ss_pred CCCCCCCCCceEEEEEEEeCCCCCccchhhhhhcccCCCceeEEEeEEEEeCC
Q 018377 75 VAPPDLQCKDKFLIQGIVVPFGTSDEDITSDMFAKDSGKYVEEKKLRVILMSP 127 (357)
Q Consensus 75 e~P~d~q~kDKFLVQSv~v~~g~t~~di~~e~Fkk~~~~~V~E~KLrV~fv~p 127 (357)
..|.|- .--|-+....+|+.....+-. . +..=......+|++-|-+.
T Consensus 103 ~lP~Dr--ESlf~lnv~eIP~~~~~~~~~-~---~n~l~iair~~IKLFyRP~ 149 (246)
T PRK09926 103 ALPKDR--ESVFWFNVLEVPPKPDAEKVA-N---QSLLQLAFRTRIKLFYRPD 149 (246)
T ss_pred CCCCCc--eEEEEEEeeecCCCCcccccc-c---cceEEEeeeeeEEEEEcCc
Confidence 355431 223555555666421100000 0 0001234677888877643
No 10
>PRK15249 fimbrial chaperone protein StbB; Provisional
Probab=88.77 E-value=3.4 Score=39.83 Aligned_cols=112 Identities=17% Similarity=0.191 Sum_probs=70.5
Q ss_pred CeEEeCCeeEEeccCCceeEEEEEEEcCCCCeEEEEEeeCC------C-----CcEEEeCCcceeCCCCeEEEEEEeccC
Q 018377 5 LLDIQPLELKFTFEVKKQSTCVIQLGNKSDQCVAFKVKTTS------P-----KKYCVRPNVSIIKPKAISDFTVTMQAQ 73 (357)
Q Consensus 5 LL~I~P~EL~F~~e~~kq~sc~LtLtN~Sd~~VAFKVKTTs------P-----kkY~VRPn~GvI~P~ss~~V~VTmqa~ 73 (357)
-|.|.|..+.|.... ..++|+|.|.++.++.....+.+ | .-|.|.|+.--|+||+...|.|.....
T Consensus 29 ~l~l~~TRviy~~~~---~~~sl~l~N~~~~p~LvQsWv~~~~~~~~p~~~~~~pFivtPPlfrl~p~~~q~lRI~~~~~ 105 (253)
T PRK15249 29 SVTILGSRIIYPSTA---SSVDVQLKNNDAIPYIVQTWFDDGDMNTSPENSSAMPFIATPPVFRIQPKAGQVVRVIYNNT 105 (253)
T ss_pred EEEeCceEEEEeCCC---cceeEEEEcCCCCcEEEEEEEeCCCCCCCccccccCcEEEcCCeEEecCCCceEEEEEEcCC
Confidence 367888889997544 37899999998887666654322 1 139999999999999999999998742
Q ss_pred CCCCCCCCCCceEEEEEEEeCCCCCccchhhhhhcccC-CCceeEEEeEEEEeCC
Q 018377 74 RVAPPDLQCKDKFLIQGIVVPFGTSDEDITSDMFAKDS-GKYVEEKKLRVILMSP 127 (357)
Q Consensus 74 ~e~P~d~q~kDKFLVQSv~v~~g~t~~di~~e~Fkk~~-~~~V~E~KLrV~fv~p 127 (357)
...|.|- .--|-+....+|+.....+ .+.. =......+|++-|-+.
T Consensus 106 ~~lP~DR--ESlf~lnv~eIP~~~~~~~------~~~n~l~ialr~~IKLFyRP~ 152 (253)
T PRK15249 106 KKLPQDR--ESVFWFNVLQVPPTNIGSD------SGQNKMLVMLRSRIKLFYRPD 152 (253)
T ss_pred CCCCCCc--eEEEEEEeeecCCCCcccc------cccceEEEEeeeEEEEEEccc
Confidence 2455431 2224454455554211100 0111 1234667788777643
No 11
>PF11614 FixG_C: IG-like fold at C-terminal of FixG, putative oxidoreductase; PDB: 2R39_A.
Probab=88.11 E-value=2.1 Score=35.79 Aligned_cols=53 Identities=15% Similarity=0.230 Sum_probs=37.1
Q ss_pred eEEEEEEEcCCCCeEEEEEeeCCCCcEEE-eCCcc-eeCCCCeEEEEEEeccCCC
Q 018377 23 STCVIQLGNKSDQCVAFKVKTTSPKKYCV-RPNVS-IIKPKAISDFTVTMQAQRV 75 (357)
Q Consensus 23 ~sc~LtLtN~Sd~~VAFKVKTTsPkkY~V-RPn~G-vI~P~ss~~V~VTmqa~~e 75 (357)
....|+|.|+++++..|.|+...+..+.+ .|... -|.||++..+.|.+.+...
T Consensus 33 N~Y~lkl~Nkt~~~~~~~i~~~g~~~~~l~~~~~~i~v~~g~~~~~~v~v~~p~~ 87 (118)
T PF11614_consen 33 NQYTLKLTNKTNQPRTYTISVEGLPGAELQGPENTITVPPGETREVPVFVTAPPD 87 (118)
T ss_dssp EEEEEEEEE-SSS-EEEEEEEES-SS-EE-ES--EEEE-TT-EEEEEEEEEE-GG
T ss_pred EEEEEEEEECCCCCEEEEEEEecCCCeEEECCCcceEECCCCEEEEEEEEEECHH
Confidence 36799999999999999999988888888 66444 4999999999988876543
No 12
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=86.72 E-value=3.2 Score=32.92 Aligned_cols=49 Identities=27% Similarity=0.327 Sum_probs=37.0
Q ss_pred HHHHHhhhhhhhhhHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHhhh
Q 018377 272 EELKLKLNVMDSQLREAEHTIRKLMEARKL-------ATREKDMLKHELEVLRRKS 320 (357)
Q Consensus 272 ~~l~~k~~~~~~~~~ea~~~i~kl~ee~~~-------~~~~~~~L~~El~~lr~~~ 320 (357)
..|..++..+..|++--...+..|+.||+. |.+++++|+.|++.||++-
T Consensus 8 ~~Lr~rLd~~~rk~~~~~~~~k~L~~ERd~~~~~l~~a~~e~~~Lk~E~e~L~~el 63 (69)
T PF14197_consen 8 ATLRNRLDSLTRKNSVHEIENKRLRRERDSAERQLGDAYEENNKLKEENEALRKEL 63 (69)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345556667777777777788888888865 4567889999999999764
No 13
>PF07610 DUF1573: Protein of unknown function (DUF1573); InterPro: IPR011467 These hypothetical proteins from bacteria, such as Rhodopirellula baltica, Bacteroides thetaiotaomicron and Porphyromonas gingivalis, share a region of conserved sequence towards their N termini.
Probab=86.42 E-value=3.1 Score=29.79 Aligned_cols=43 Identities=21% Similarity=0.159 Sum_probs=35.2
Q ss_pred EEEEcCCCCeEE-EEEeeCCCCcEEEeCCcceeCCCCeEEEEEEe
Q 018377 27 IQLGNKSDQCVA-FKVKTTSPKKYCVRPNVSIIKPKAISDFTVTM 70 (357)
Q Consensus 27 LtLtN~Sd~~VA-FKVKTTsPkkY~VRPn~GvI~P~ss~~V~VTm 70 (357)
++++|.++.++. .+|+| +=+-..+......|.||++..|.|++
T Consensus 2 F~~~N~g~~~L~I~~v~t-sCgCt~~~~~~~~i~PGes~~i~v~y 45 (45)
T PF07610_consen 2 FEFTNTGDSPLVITDVQT-SCGCTTAEYSKKPIAPGESGKIKVTY 45 (45)
T ss_pred EEEEECCCCcEEEEEeeE-ccCCEEeeCCcceECCCCEEEEEEEC
Confidence 679999987654 55665 57788888888999999999999874
No 14
>PRK11385 putativi pili assembly chaperone; Provisional
Probab=86.10 E-value=6 Score=37.96 Aligned_cols=109 Identities=17% Similarity=0.217 Sum_probs=69.8
Q ss_pred CeEEeCCeeEEeccCCceeEEEEEEEcCCCCeEEEEEeeC------------CCCcEEEeCCcceeCCCCeEEEEEEecc
Q 018377 5 LLDIQPLELKFTFEVKKQSTCVIQLGNKSDQCVAFKVKTT------------SPKKYCVRPNVSIIKPKAISDFTVTMQA 72 (357)
Q Consensus 5 LL~I~P~EL~F~~e~~kq~sc~LtLtN~Sd~~VAFKVKTT------------sPkkY~VRPn~GvI~P~ss~~V~VTmqa 72 (357)
-+.+++..+.|.... ...+++|.|.++++..-..... ...-|.|-|+.--|+|++...+.|....
T Consensus 27 ~v~l~~TRvIy~~~~---~~~sv~l~N~~~~p~LvQswv~~~~~~~~~~~~~~~~pFivtPPlfrl~p~~~q~lRIi~~~ 103 (236)
T PRK11385 27 GVVVGGTRFIFPADR---ESISILLTNTSQESWLINSKINRPTRWAGGEASTVPAPLLAAPPLILLKPGTTGTLRLLRTE 103 (236)
T ss_pred eEEeCceEEEEcCCC---ceEEEEEEeCCCCcEEEEEEcccCccccCcccccccCCEEEcCCeEEECCCCceEEEEEECC
Confidence 356777788887643 4789999999988644333211 1134999999999999999999999875
Q ss_pred CCCCCCCCCCCceEEEEEEEeCCCCCccchhhhhhcccCCCceeEEEeEEEEeCC
Q 018377 73 QRVAPPDLQCKDKFLIQGIVVPFGTSDEDITSDMFAKDSGKYVEEKKLRVILMSP 127 (357)
Q Consensus 73 ~~e~P~d~q~kDKFLVQSv~v~~g~t~~di~~e~Fkk~~~~~V~E~KLrV~fv~p 127 (357)
....|.| -..-|-+-...+|+.. ++ +..=......+|++-|-+.
T Consensus 104 ~~~LP~D--RESlf~lnv~~IPp~~--~~-------~n~L~iair~riKLFyRP~ 147 (236)
T PRK11385 104 SDILPVD--RETLFELSIASVPSGK--VE-------NQSVKVAMRSVFKLFWRPE 147 (236)
T ss_pred CCCCCCC--ceEEEEEEEEecCCCc--CC-------CceEEEEEEeeEEEEEccc
Confidence 3345644 2334555555666521 10 0001244677888888633
No 15
>PRK15246 fimbrial assembly chaperone StbE; Provisional
Probab=86.03 E-value=7.2 Score=37.33 Aligned_cols=113 Identities=14% Similarity=0.225 Sum_probs=71.2
Q ss_pred CeEEeCCeeEEeccCCceeEEEEEEEcCCCCeEEEEEeeCC------CC----cEEEeCCcceeCCCCeEEEEEEeccCC
Q 018377 5 LLDIQPLELKFTFEVKKQSTCVIQLGNKSDQCVAFKVKTTS------PK----KYCVRPNVSIIKPKAISDFTVTMQAQR 74 (357)
Q Consensus 5 LL~I~P~EL~F~~e~~kq~sc~LtLtN~Sd~~VAFKVKTTs------Pk----kY~VRPn~GvI~P~ss~~V~VTmqa~~ 74 (357)
-|.|.+..+.|+... ..++++|.|.++.++.-.....+ |. -|.|.|+.-.|+|++...|.|......
T Consensus 11 ~v~l~~TRvI~~~~~---~~~sv~l~N~~~~p~LvQsWvd~~~~~~~p~~~~~pFivtPPlfrl~~~~~~~lRI~~~~~~ 87 (233)
T PRK15246 11 AVNIDRTRIIFASDD---VAQSLTLSNDNTTPMLLQVWTDAGNIDASPDNSKTPLVALPPVFKMQPGELRTLRLLLSSRQ 87 (233)
T ss_pred EEEECceEEEEcCCC---ceEEEEEEeCCCCcEEEEEEEeCCCCccCcccccCcEEECCcceEECCCCceEEEEEECCCC
Confidence 367788889998643 47899999999886544442221 11 499999999999999999999986533
Q ss_pred CCCCCCCCCceEEEEEEEeCCCCCccchhhhhhcccCCCceeEEEeEEEEeCC
Q 018377 75 VAPPDLQCKDKFLIQGIVVPFGTSDEDITSDMFAKDSGKYVEEKKLRVILMSP 127 (357)
Q Consensus 75 e~P~d~q~kDKFLVQSv~v~~g~t~~di~~e~Fkk~~~~~V~E~KLrV~fv~p 127 (357)
..|.| -.--|-+....+|+... + ... .+..=......+|++-|-+.
T Consensus 88 ~LP~D--RESlf~lnv~~IP~~~~--~-~~~--~~~~l~iair~rIKlFyRP~ 133 (233)
T PRK15246 88 QLATD--RESLFWLNIYQIPPVTQ--D-IKN--HPRKLVLPLRLRLKILIRPT 133 (233)
T ss_pred CCCCC--ceEEEEEEEEEcCCCCc--c-ccc--ccceEEEEeeeEEEEEECCc
Confidence 45543 12336666666665211 1 000 00001234667888877744
No 16
>PRK15295 fimbrial assembly chaperone SthB; Provisional
Probab=84.15 E-value=9.9 Score=36.09 Aligned_cols=110 Identities=11% Similarity=0.155 Sum_probs=68.5
Q ss_pred CeEEeCCeeEEeccCCceeEEEEEEEcCCCCeEEEEEeeCC-------CCcEEEeCCcceeCCCCeEEEEEEeccCCCCC
Q 018377 5 LLDIQPLELKFTFEVKKQSTCVIQLGNKSDQCVAFKVKTTS-------PKKYCVRPNVSIIKPKAISDFTVTMQAQRVAP 77 (357)
Q Consensus 5 LL~I~P~EL~F~~e~~kq~sc~LtLtN~Sd~~VAFKVKTTs-------PkkY~VRPn~GvI~P~ss~~V~VTmqa~~e~P 77 (357)
-|.+++..+.|....+ ..+++|.|.++.++.-.....+ ..-|.|.|+.-.|+||+...|.|.... ...|
T Consensus 20 ~i~l~~TRvI~~~~~~---~~si~i~N~~~~p~LvQsWv~~~~~~~~~~~pFivtPPl~rl~p~~~q~lRI~~~~-~~LP 95 (226)
T PRK15295 20 SIVVGGTRLVFDGNND---ESSINVENKDSKANLVQSWLSVVDPQVTNKQAFIITPPLFRLDAGQKNSIRVIRSG-APLP 95 (226)
T ss_pred cEEeCceEEEEeCCCc---eeEEEEEeCCCCcEEEEEEEeCCCCCCCCCCCEEEcCCeEEECCCCceEEEEEECC-CCCC
Confidence 3667788888876443 7899999998875443322211 224999999999999999999998864 3345
Q ss_pred CCCCCCceEEEEEEEeCCCCCccchhhhhhcccCCCceeEEEeEEEEeCC
Q 018377 78 PDLQCKDKFLIQGIVVPFGTSDEDITSDMFAKDSGKYVEEKKLRVILMSP 127 (357)
Q Consensus 78 ~d~q~kDKFLVQSv~v~~g~t~~di~~e~Fkk~~~~~V~E~KLrV~fv~p 127 (357)
.| -.--|-+-...+|+.... + .+..=......+|++-|-+.
T Consensus 96 ~D--rEslf~lnv~~IP~~~~~-~------~~n~l~iair~rIKLFyRP~ 136 (226)
T PRK15295 96 AD--RESMYWLNIKGIPSIDDN-A------SANRVEISINTQIKLIYRPP 136 (226)
T ss_pred CC--ceEEEEEEEEEcCCCCCc-C------ccceEEEEeeeeeeEEEchh
Confidence 43 122355555566652111 0 00011234566788777644
No 17
>PRK04406 hypothetical protein; Provisional
Probab=83.96 E-value=5.5 Score=32.02 Aligned_cols=50 Identities=20% Similarity=0.226 Sum_probs=44.0
Q ss_pred HHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 018377 273 ELKLKLNVMDSQLREAEHTIRKLMEARKLATREKDMLKHELEVLRRKSNL 322 (357)
Q Consensus 273 ~l~~k~~~~~~~~~ea~~~i~kl~ee~~~~~~~~~~L~~El~~lr~~~~~ 322 (357)
++..++..||.++.--+.+|..|++.--.--++.+.|+.+|..|+.+-..
T Consensus 8 ~le~Ri~~LE~~lAfQE~tIe~LN~~v~~Qq~~I~~L~~ql~~L~~rl~~ 57 (75)
T PRK04406 8 QLEERINDLECQLAFQEQTIEELNDALSQQQLLITKMQDQMKYVVGKVKN 57 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45667899999999999999999999988889999999999999776544
No 18
>PRK10884 SH3 domain-containing protein; Provisional
Probab=83.28 E-value=4.6 Score=38.14 Aligned_cols=70 Identities=20% Similarity=0.183 Sum_probs=36.5
Q ss_pred HhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccc-ccCCcchhhHHHHHHHHHHHHHhc
Q 018377 276 LKLNVMDSQLREAEHTIRKLMEARKLATREKDMLKHELEVLRRKSNLRR-VQVGFPLLFVCMVALIGLVVGYLS 348 (357)
Q Consensus 276 ~k~~~~~~~~~ea~~~i~kl~ee~~~~~~~~~~L~~El~~lr~~~~~~~-~~~gf~l~fv~~v~llg~~lGyl~ 348 (357)
.++...+....+.+.--.+|++|-..+-.+++.|+.|++-+++....+- -.||.= +|+-+ |||++|-||.
T Consensus 125 ~~~~~~~~~~~~L~~~n~~L~~~l~~~~~~~~~l~~~~~~~~~~~~~~wf~~Gg~v-~~~Gl--llGlilp~l~ 195 (206)
T PRK10884 125 QKVAQSDSVINGLKEENQKLKNQLIVAQKKVDAANLQLDDKQRTIIMQWFMYGGGV-AGIGL--LLGLLLPHLI 195 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHchHH-HHHHH--HHHHHhcccc
Confidence 3344444444444444555555555555566666666665555433220 124532 22222 3899999997
No 19
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=83.23 E-value=5.5 Score=31.19 Aligned_cols=49 Identities=22% Similarity=0.311 Sum_probs=41.3
Q ss_pred HHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccc
Q 018377 275 KLKLNVMDSQLREAEHTIRKLMEARKLATREKDMLKHELEVLRRKSNLR 323 (357)
Q Consensus 275 ~~k~~~~~~~~~ea~~~i~kl~ee~~~~~~~~~~L~~El~~lr~~~~~~ 323 (357)
..++..||.++.-.+.+|..|++.--.--++.++|+.+|..|+.+...-
T Consensus 3 e~Ri~~LE~~la~qe~~ie~Ln~~v~~Qq~~I~~L~~~l~~L~~rl~~~ 51 (69)
T PF04102_consen 3 EERIEELEIKLAFQEDTIEELNDVVTEQQRQIDRLQRQLRLLRERLREL 51 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3467889999999999999999999999999999999999999876653
No 20
>PRK15299 fimbrial chaperone protein StiB; Provisional
Probab=82.60 E-value=12 Score=35.34 Aligned_cols=110 Identities=11% Similarity=0.156 Sum_probs=70.0
Q ss_pred CeEEeCCeeEEeccCCceeEEEEEEEcCCCCeEEEEEeeCC--------CCcEEEeCCcceeCCCCeEEEEEEeccCCCC
Q 018377 5 LLDIQPLELKFTFEVKKQSTCVIQLGNKSDQCVAFKVKTTS--------PKKYCVRPNVSIIKPKAISDFTVTMQAQRVA 76 (357)
Q Consensus 5 LL~I~P~EL~F~~e~~kq~sc~LtLtN~Sd~~VAFKVKTTs--------PkkY~VRPn~GvI~P~ss~~V~VTmqa~~e~ 76 (357)
-|.|+|..+.|.... ...+|+|.|.++.++.-...... ..-|.|.|+.--|+||+...|.|.... ...
T Consensus 23 ~i~l~~TRvi~~~~~---~~~sl~l~N~~~~p~lvQsWv~~~~~~~~~~~~pfivtPPl~rl~p~~~q~lRI~~~~-~~l 98 (227)
T PRK15299 23 GINIGTTRVIFHGDA---KDASISISNSDNVPYLIQSWAQSISETGASGDAPFMVTPPLFRLNGGQKNVLRIIRTG-GNL 98 (227)
T ss_pred eEEECceEEEEeCCC---cEEEEEEEeCCCCcEEEEEEeecCCCCCCcCCCCEEEcCCeEEECCCCccEEEEEECC-CCC
Confidence 367888888887664 37899999998876655543321 124999999999999999999998764 234
Q ss_pred CCCCCCCceEEEEEEEeCCCCCccchhhhhhcccCCCceeEEEeEEEEeCC
Q 018377 77 PPDLQCKDKFLIQGIVVPFGTSDEDITSDMFAKDSGKYVEEKKLRVILMSP 127 (357)
Q Consensus 77 P~d~q~kDKFLVQSv~v~~g~t~~di~~e~Fkk~~~~~V~E~KLrV~fv~p 127 (357)
|.| -..-|-+....+|+.... + . . ..=......+|++.|-++
T Consensus 99 P~D--rEslf~lnv~eIP~~~~~-~---~--~-n~l~iavr~riKLfyRP~ 140 (227)
T PRK15299 99 PED--RESLYWLDIKSIPSSNPD-N---K--H-NTLMLAVKAEFKLIYRPK 140 (227)
T ss_pred CCc--ceEEEEEEeEecCCCCcc-c---c--c-ceEEEEEeeeeeEEEccc
Confidence 543 123356666666642110 0 0 0 001233566778877533
No 21
>PRK15211 fimbrial chaperone protein PefD; Provisional
Probab=82.55 E-value=12 Score=35.72 Aligned_cols=109 Identities=11% Similarity=0.122 Sum_probs=68.9
Q ss_pred eEEeCCeeEEeccCCceeEEEEEEEcCCCCeEEEEEeeCC------CCcEEEeCCcceeCCCCeEEEEEEeccCCCCCCC
Q 018377 6 LDIQPLELKFTFEVKKQSTCVIQLGNKSDQCVAFKVKTTS------PKKYCVRPNVSIIKPKAISDFTVTMQAQRVAPPD 79 (357)
Q Consensus 6 L~I~P~EL~F~~e~~kq~sc~LtLtN~Sd~~VAFKVKTTs------PkkY~VRPn~GvI~P~ss~~V~VTmqa~~e~P~d 79 (357)
+.+++..+.|+... ..++++|.|.++.++.-...... ..-|.|.|+.-.|+||+...|.|.... ...|.|
T Consensus 24 v~l~~TRvIy~~~~---~~~si~i~N~~~~p~LvQswv~~~~~~~~~~pFivtPPlfrl~p~~~q~lRI~~~~-~~LP~D 99 (229)
T PRK15211 24 FVLNGTRFIYDEGR---KNISFEVTNQADQTYGGQVWIDNTTQGSSTVYMVPAPPFFKVRPKEKQIIRIMKTD-SALPKD 99 (229)
T ss_pred EEECceEEEEcCCC---ceEEEEEEeCCCCcEEEEEEEecCCCCCccCCEEEcCCeEEECCCCceEEEEEECC-CCCCCC
Confidence 56677778887643 47899999999887554433211 124999999999999999999999874 335544
Q ss_pred CCCCceEEEEEEEeCCCCCccchhhhhhcccCCCceeEEEeEEEEeCC
Q 018377 80 LQCKDKFLIQGIVVPFGTSDEDITSDMFAKDSGKYVEEKKLRVILMSP 127 (357)
Q Consensus 80 ~q~kDKFLVQSv~v~~g~t~~di~~e~Fkk~~~~~V~E~KLrV~fv~p 127 (357)
-..-|-+-...+|+.....+ ...=......++++-|-+.
T Consensus 100 --RESlf~lnv~~IP~~~~~~~-------~n~l~iair~~iKLfyRP~ 138 (229)
T PRK15211 100 --RESLFWLNVQEIPPKPKASE-------GNVLAVALNTQVKLIYRPK 138 (229)
T ss_pred --ceEEEEEEEEEcCCCCCccc-------cceEEEEEEeeeeeEEcch
Confidence 23345555556664211000 0001234667788777744
No 22
>PRK04325 hypothetical protein; Provisional
Probab=82.20 E-value=5.7 Score=31.72 Aligned_cols=51 Identities=20% Similarity=0.247 Sum_probs=42.9
Q ss_pred HHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 018377 272 EELKLKLNVMDSQLREAEHTIRKLMEARKLATREKDMLKHELEVLRRKSNL 322 (357)
Q Consensus 272 ~~l~~k~~~~~~~~~ea~~~i~kl~ee~~~~~~~~~~L~~El~~lr~~~~~ 322 (357)
+.+..++..||.++.--+.+|..|.+.--.--++.+.|+.+|..|+.+-..
T Consensus 5 ~~~e~Ri~~LE~klAfQE~tIe~LN~vv~~Qq~~I~~L~~ql~~L~~rl~~ 55 (74)
T PRK04325 5 QEMEDRITELEIQLAFQEDLIDGLNATVARQQQTLDLLQAQLRLLYQQMRD 55 (74)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334456888999999999999999999888888899999999999776544
No 23
>PRK15208 long polar fimbrial chaperone LpfB; Provisional
Probab=82.16 E-value=13 Score=35.19 Aligned_cols=111 Identities=11% Similarity=0.188 Sum_probs=68.4
Q ss_pred CeEEeCCeeEEeccCCceeEEEEEEEcCCCC--eEEEEEeeCCC----CcEEEeCCcceeCCCCeEEEEEEeccCCCCCC
Q 018377 5 LLDIQPLELKFTFEVKKQSTCVIQLGNKSDQ--CVAFKVKTTSP----KKYCVRPNVSIIKPKAISDFTVTMQAQRVAPP 78 (357)
Q Consensus 5 LL~I~P~EL~F~~e~~kq~sc~LtLtN~Sd~--~VAFKVKTTsP----kkY~VRPn~GvI~P~ss~~V~VTmqa~~e~P~ 78 (357)
-|.+.|..+.|.... ..++++|.|++++ ++.+.+-.... .-|.|-|+.--|+|++...|.|.... ...|.
T Consensus 22 gv~l~~TRvI~~~~~---~~~si~i~N~~~~~~~LvQsWv~~~~~~~~~pfivtPPl~rl~p~~~q~lRIi~~~-~~lP~ 97 (228)
T PRK15208 22 GVALSSTRVIYDGSK---KEASLTVNNKSKTEEFLIQSWIDDANGNKKTPFIITPPLFKLDPTKNNVLRIVNIT-NTLPQ 97 (228)
T ss_pred cEEeCceEEEEeCCC---ceEEEEEEeCCCCCcEEEEEEEECCCCCccCCEEECCCeEEECCCCccEEEEEECC-CCCCC
Confidence 467788889998744 3789999999864 44444432211 12999999999999999999998764 23454
Q ss_pred CCCCCceEEEEEEEeCCCCCccchhhhhhcccCCCceeEEEeEEEEeCC
Q 018377 79 DLQCKDKFLIQGIVVPFGTSDEDITSDMFAKDSGKYVEEKKLRVILMSP 127 (357)
Q Consensus 79 d~q~kDKFLVQSv~v~~g~t~~di~~e~Fkk~~~~~V~E~KLrV~fv~p 127 (357)
|- .--|.+-...+|+.....+ .+..=......+|++-|-+.
T Consensus 98 Dr--ESlf~lnv~eIP~~~~~~~------~~n~l~ia~r~~IKlFyRP~ 138 (228)
T PRK15208 98 DR--ESVYWINVKAIPAKSEDAE------NKNVLQIAVRTRLKLFYRPA 138 (228)
T ss_pred Ce--eEEEEEEEEEcCCCCCCcc------ccceEEEEeeeeeeEEEchh
Confidence 31 2235555555664211000 00001234677788777633
No 24
>PF05957 DUF883: Bacterial protein of unknown function (DUF883); InterPro: IPR010279 This family consists of several bacterial proteins of unknown function that include the Escherichia coli genes for ElaB, YgaM and YqjD.
Probab=81.91 E-value=24 Score=28.66 Aligned_cols=21 Identities=29% Similarity=0.411 Sum_probs=19.1
Q ss_pred cchhhHHHHHHHHHHHHHhcc
Q 018377 329 FPLLFVCMVALIGLVVGYLSH 349 (357)
Q Consensus 329 f~l~fv~~v~llg~~lGyl~~ 349 (357)
=|+.-|.+.+.+|++||+|+.
T Consensus 72 ~P~~svgiAagvG~llG~Ll~ 92 (94)
T PF05957_consen 72 NPWQSVGIAAGVGFLLGLLLR 92 (94)
T ss_pred ChHHHHHHHHHHHHHHHHHHh
Confidence 488999999999999999986
No 25
>PRK15290 lfpB fimbrial chaperone protein; Provisional
Probab=80.91 E-value=14 Score=35.57 Aligned_cols=110 Identities=13% Similarity=0.142 Sum_probs=70.7
Q ss_pred eEEeCCeeEEeccCCceeEEEEEEEcCCC-CeEEEEEeeCC---C----CcEEEeCCcceeCCCCeEEEEEEeccCCCCC
Q 018377 6 LDIQPLELKFTFEVKKQSTCVIQLGNKSD-QCVAFKVKTTS---P----KKYCVRPNVSIIKPKAISDFTVTMQAQRVAP 77 (357)
Q Consensus 6 L~I~P~EL~F~~e~~kq~sc~LtLtN~Sd-~~VAFKVKTTs---P----kkY~VRPn~GvI~P~ss~~V~VTmqa~~e~P 77 (357)
|.+++..+.|+... ...+++|.|.++ .+..-.....+ . .-|.|-|+.-.|+||+...|.|........|
T Consensus 39 v~l~~TRvIy~~~~---~~~sl~v~N~~~~~p~LvQsWvd~~~~~~~~~~pFivtPPlfrl~p~~~q~lRIi~~~~~~LP 115 (243)
T PRK15290 39 VVIGGTRVVYLSNN---PDKSISVFSKEEKIPYLIQAWVDPFNKEDKSKAPFTVIPPVSRLEPSQEKVLRIIHTKGVSLP 115 (243)
T ss_pred EEECceEEEEeCCC---ceEEEEEEeCCCCCcEEEEEEEecCCCCCcccCCEEEcCCeEEECCCCceEEEEEEcCCCCCC
Confidence 66777888898643 377999999986 45666654441 1 1399999999999999999999987533455
Q ss_pred CCCCCCceEEEEEEEeCCCCCccchhhhhhcccCCCceeEEEeEEEEeCC
Q 018377 78 PDLQCKDKFLIQGIVVPFGTSDEDITSDMFAKDSGKYVEEKKLRVILMSP 127 (357)
Q Consensus 78 ~d~q~kDKFLVQSv~v~~g~t~~di~~e~Fkk~~~~~V~E~KLrV~fv~p 127 (357)
.| -.--|-+....+|+.....+ +..=......++++-|-+.
T Consensus 116 ~D--RESlf~lnv~eIPp~~~~~~-------~n~L~iair~rIKlFyRP~ 156 (243)
T PRK15290 116 DD--RESVFWLNIKNIPPSASNKA-------TNSLEIAVKTRIKLFWRPA 156 (243)
T ss_pred CC--eeEEEEEEEEEcCCCCcccc-------cceEEEEEEEeeeEEEecc
Confidence 44 23345555556664211000 0011244677888888744
No 26
>PRK10132 hypothetical protein; Provisional
Probab=79.66 E-value=21 Score=30.62 Aligned_cols=22 Identities=27% Similarity=0.342 Sum_probs=19.8
Q ss_pred CcchhhHHHHHHHHHHHHHhcc
Q 018377 328 GFPLLFVCMVALIGLVVGYLSH 349 (357)
Q Consensus 328 gf~l~fv~~v~llg~~lGyl~~ 349 (357)
-=|+.-|.+.|.+|+++|+|+.
T Consensus 84 ~~Pw~svgiaagvG~llG~Ll~ 105 (108)
T PRK10132 84 ERPWCSVGTAAAVGIFIGALLS 105 (108)
T ss_pred hCcHHHHHHHHHHHHHHHHHHh
Confidence 4689999999999999999986
No 27
>PRK15192 fimbrial chaperone BcfG; Provisional
Probab=78.57 E-value=17 Score=34.94 Aligned_cols=105 Identities=12% Similarity=0.244 Sum_probs=68.1
Q ss_pred eEEeCCeeEEeccCCceeEEEEEEEcCCCCeEEEEEeeC----------C----CCcEEEeCCcceeCCCCeEEEEEEec
Q 018377 6 LDIQPLELKFTFEVKKQSTCVIQLGNKSDQCVAFKVKTT----------S----PKKYCVRPNVSIIKPKAISDFTVTMQ 71 (357)
Q Consensus 6 L~I~P~EL~F~~e~~kq~sc~LtLtN~Sd~~VAFKVKTT----------s----PkkY~VRPn~GvI~P~ss~~V~VTmq 71 (357)
|.++...+.|+... ...+++|.|.++++ |=|++. . ..-|.|.|+.--|+|++...+.|...
T Consensus 24 i~l~~TRvIy~~~~---k~~sv~l~N~~~~p--~LvQswv~~~~~w~~~~~~~~~~PFivtPPlfrl~p~~~~~lRI~~~ 98 (234)
T PRK15192 24 VVIGGTRFIYHAGA---PALSVPVSNHSEAS--WLIDTHILPGGRWPGTKNEGNITPFVVTPPLFMLSARQENSMRVVYT 98 (234)
T ss_pred EEeCceEEEEcCCC---ceEEEEEEeCCCCc--EEEEEEeccCccccccCCccccCCEEEcCCeEEECCCCceEEEEEEC
Confidence 56677788887643 47899999999886 555541 1 11399999999999999999999987
Q ss_pred cCCCCCCCCCCCceEEEEEEEeCCCCCccchhhhhhcccCCCceeEEEeEEEEeCC
Q 018377 72 AQRVAPPDLQCKDKFLIQGIVVPFGTSDEDITSDMFAKDSGKYVEEKKLRVILMSP 127 (357)
Q Consensus 72 a~~e~P~d~q~kDKFLVQSv~v~~g~t~~di~~e~Fkk~~~~~V~E~KLrV~fv~p 127 (357)
. ...|.| -.--|-+....+|+.. .+ +..=......+|++-|-+.
T Consensus 99 ~-~~LP~D--RESlf~lnv~~IPp~~--~~-------~n~l~iair~riKlFYRP~ 142 (234)
T PRK15192 99 G-APLPAD--RESLFTLSIAAIPSGK--PE-------ANRVQMAFRSALKLLYRPE 142 (234)
T ss_pred C-CCCCCc--ceEEEEEEEEecCCCC--CC-------CcEEEEEEEeeeeEEEccc
Confidence 4 335543 2334556666666521 10 0111234667788777643
No 28
>PRK10404 hypothetical protein; Provisional
Probab=78.06 E-value=26 Score=29.67 Aligned_cols=21 Identities=33% Similarity=0.382 Sum_probs=18.4
Q ss_pred cchhhHHHHHHHHHHHHHhcc
Q 018377 329 FPLLFVCMVALIGLVVGYLSH 349 (357)
Q Consensus 329 f~l~fv~~v~llg~~lGyl~~ 349 (357)
=|+--|.+.|.+|++||+|+.
T Consensus 79 ~Pw~avGiaagvGlllG~Ll~ 99 (101)
T PRK10404 79 KPWQGIGVGAAVGLVLGLLLA 99 (101)
T ss_pred CcHHHHHHHHHHHHHHHHHHh
Confidence 578888889999999999975
No 29
>PRK00846 hypothetical protein; Provisional
Probab=77.48 E-value=11 Score=30.82 Aligned_cols=50 Identities=18% Similarity=0.116 Sum_probs=43.6
Q ss_pred HHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 018377 273 ELKLKLNVMDSQLREAEHTIRKLMEARKLATREKDMLKHELEVLRRKSNL 322 (357)
Q Consensus 273 ~l~~k~~~~~~~~~ea~~~i~kl~ee~~~~~~~~~~L~~El~~lr~~~~~ 322 (357)
++..++..||.++.-.+.+|..|++.--..-++.++|+..|..|+.+-..
T Consensus 10 ~le~Ri~~LE~rlAfQe~tIe~LN~~v~~qq~~I~~L~~ql~~L~~rL~~ 59 (77)
T PRK00846 10 ALEARLVELETRLSFQEQALTELSEALADARLTGARNAELIRHLLEDLGK 59 (77)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45567899999999999999999999999889999999999998876543
No 30
>PRK15195 fimbrial chaperone protein FimC; Provisional
Probab=76.88 E-value=25 Score=33.51 Aligned_cols=111 Identities=10% Similarity=0.201 Sum_probs=67.4
Q ss_pred eEEeCCeeEEeccCCceeEEEEEEEcCCCC--eEEEEEeeCC----CCcEEEeCCcceeCCCCeEEEEEEeccCCCCCCC
Q 018377 6 LDIQPLELKFTFEVKKQSTCVIQLGNKSDQ--CVAFKVKTTS----PKKYCVRPNVSIIKPKAISDFTVTMQAQRVAPPD 79 (357)
Q Consensus 6 L~I~P~EL~F~~e~~kq~sc~LtLtN~Sd~--~VAFKVKTTs----PkkY~VRPn~GvI~P~ss~~V~VTmqa~~e~P~d 79 (357)
+.+++..+.|....+ .++++|.|.+++ ++....-.+. ..-|.|.|+.--|+||+...|.|.... ...|.|
T Consensus 27 i~i~~TRvIy~~~~~---~~si~l~N~~~~~~~LvQsWv~~~~~~~~~pfivtPPlfrl~p~~~q~lRIi~~~-~~LP~D 102 (229)
T PRK15195 27 IALGATRVIYPADAK---QTSLAIRNSHTNERYLVNSWIENSSGVKEKSFIVTPPLFVSEPKSENTLRIIYAG-PPLAAD 102 (229)
T ss_pred EEECCeEEEEeCCCc---eEEEEEEeCCCCccEEEEEEecCCCCCccCCEEEcCCeEEECCCCceEEEEEECC-CCCCCC
Confidence 667788888875543 689999999864 4544322221 124999999999999999999999864 234533
Q ss_pred CCCCceEEEEEEEeCCCCCccchhhhhhcccCCCceeEEEeEEEEeCC
Q 018377 80 LQCKDKFLIQGIVVPFGTSDEDITSDMFAKDSGKYVEEKKLRVILMSP 127 (357)
Q Consensus 80 ~q~kDKFLVQSv~v~~g~t~~di~~e~Fkk~~~~~V~E~KLrV~fv~p 127 (357)
- ..-|-+-...+|+..... .. .+..=......+|++-|-+.
T Consensus 103 r--ESlf~Lnv~eIP~~~~~~-~~----~~n~l~iair~~iKlFyRP~ 143 (229)
T PRK15195 103 R--ESLFWMNVKAIPSVDKNA-LE----GRNVLQLAILSRIKLFVRPI 143 (229)
T ss_pred e--eEEEEEEeeecCCCCccc-cc----ccceEEEEEEeEEEEEEccc
Confidence 1 223555555555421110 00 00001244677888877643
No 31
>PRK02119 hypothetical protein; Provisional
Probab=76.63 E-value=13 Score=29.69 Aligned_cols=49 Identities=14% Similarity=0.135 Sum_probs=42.2
Q ss_pred HHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 018377 274 LKLKLNVMDSQLREAEHTIRKLMEARKLATREKDMLKHELEVLRRKSNL 322 (357)
Q Consensus 274 l~~k~~~~~~~~~ea~~~i~kl~ee~~~~~~~~~~L~~El~~lr~~~~~ 322 (357)
+..++..||.++.--+.+|..|++.--.--++.+.|+.+|..|+.+-..
T Consensus 7 ~e~Ri~~LE~rla~QE~tie~LN~~v~~Qq~~id~L~~ql~~L~~rl~~ 55 (73)
T PRK02119 7 LENRIAELEMKIAFQENLLEELNQALIEQQFVIDKMQVQLRYMANKLKD 55 (73)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4456888999999999999999999888888999999999999776544
No 32
>PRK15188 fimbrial chaperone protein BcfB; Provisional
Probab=75.84 E-value=26 Score=33.57 Aligned_cols=110 Identities=10% Similarity=0.213 Sum_probs=67.7
Q ss_pred eEEeCCeeEEeccCCceeEEEEEEEcCCCC--eEEEEEeeC-C---CCcEEEeCCcceeCCCCeEEEEEEeccCCCCCCC
Q 018377 6 LDIQPLELKFTFEVKKQSTCVIQLGNKSDQ--CVAFKVKTT-S---PKKYCVRPNVSIIKPKAISDFTVTMQAQRVAPPD 79 (357)
Q Consensus 6 L~I~P~EL~F~~e~~kq~sc~LtLtN~Sd~--~VAFKVKTT-s---PkkY~VRPn~GvI~P~ss~~V~VTmqa~~e~P~d 79 (357)
+.+++..+.|+... ..++++|+|.+++ ++...+-.+ + ..-|.|.|+.--|+|++...+.|.... ...|.|
T Consensus 29 i~l~~TRvIy~~~~---~~~sv~i~N~~~~~p~LvQsWv~~~~~~~~~pFivtPPlfrl~~~~~~~lRI~~~~-~~lP~D 104 (228)
T PRK15188 29 IALGATRVIYPQGS---KQTSLPIINSSASNVFLIQSWVANADGSRSTDFIITPPLFVIQPKKENILRIMYVG-PSLPTD 104 (228)
T ss_pred EEECcEEEEEcCCC---ceEEEEEEeCCCCccEEEEEEEecCCCCccCCEEEcCCeEEECCCCceEEEEEECC-CCCCCC
Confidence 56777888887643 3789999999865 343332212 1 124999999999999999999999874 334543
Q ss_pred CCCCceEEEEEEEeCCCCCccchhhhhhcccCCCceeEEEeEEEEeCC
Q 018377 80 LQCKDKFLIQGIVVPFGTSDEDITSDMFAKDSGKYVEEKKLRVILMSP 127 (357)
Q Consensus 80 ~q~kDKFLVQSv~v~~g~t~~di~~e~Fkk~~~~~V~E~KLrV~fv~p 127 (357)
-..-|-+....+|+.... + -.+..=......+|++-|-+.
T Consensus 105 --RESlf~lnv~~IP~~~~~-~-----~~~n~l~ia~r~~IKLFyRP~ 144 (228)
T PRK15188 105 --RESVFYLNSKAIPSVDKN-K-----LTGNSLQIATQSVIKLFIRPK 144 (228)
T ss_pred --ceEEEEEEEEecCCCCcc-c-----cccceEEEEEeeeEEEEECCc
Confidence 233455555556642110 1 001111234667788777643
No 33
>PRK15254 fimbrial chaperone protein StdC; Provisional
Probab=75.75 E-value=28 Score=33.56 Aligned_cols=109 Identities=16% Similarity=0.153 Sum_probs=68.5
Q ss_pred CeEEeCCeeEEeccCCceeEEEEEEEcCCCC-eEEEEEeeC--C--C-CcEEEeCCcceeCCCCeEEEEEEecc--CCCC
Q 018377 5 LLDIQPLELKFTFEVKKQSTCVIQLGNKSDQ-CVAFKVKTT--S--P-KKYCVRPNVSIIKPKAISDFTVTMQA--QRVA 76 (357)
Q Consensus 5 LL~I~P~EL~F~~e~~kq~sc~LtLtN~Sd~-~VAFKVKTT--s--P-kkY~VRPn~GvI~P~ss~~V~VTmqa--~~e~ 76 (357)
-+.+++..+.|.... ...+++|.|++++ ++.-..... . + .-|.|.|+.-.|+||+...|.|.... ....
T Consensus 17 ~v~l~~TRvIy~~~~---~~~sv~v~N~~~~~p~LvQsWv~d~~~~~~~pFivtPPlfrl~p~~~~~lRI~~~~~~~~~l 93 (239)
T PRK15254 17 AVNVDRTRIIMDAPQ---KTVAITLNNDDKTTPFLAQSWVTDADGVRTDALMALPPLQRIDAGQKSQVRITQVRGLTDKL 93 (239)
T ss_pred eEEECceEEEEeCCC---ceEEEEEEeCCCCCcEEEEEEEecCCCCCcCCEEEcCCeEEECCCCceEEEEEEcccCCCCC
Confidence 366777788887643 4789999999864 544333221 1 1 24999999999999999999999763 2345
Q ss_pred CCCCCCCceEEEEEEEeCCCCCccchhhhhhcccCCCceeEEEeEEEEeCC
Q 018377 77 PPDLQCKDKFLIQGIVVPFGTSDEDITSDMFAKDSGKYVEEKKLRVILMSP 127 (357)
Q Consensus 77 P~d~q~kDKFLVQSv~v~~g~t~~di~~e~Fkk~~~~~V~E~KLrV~fv~p 127 (357)
|.| -..-|-+....+|+.. ++ ...=......+|++-|-+.
T Consensus 94 P~D--RESlf~lnv~~IP~~~--~~-------~n~L~iair~~iKLFyRP~ 133 (239)
T PRK15254 94 PQD--RETLFWFNVRGVPPKP--ED-------DNVLQLAMQSQLKLFYRPK 133 (239)
T ss_pred CCC--ceEEEEEEEEEcCCCC--CC-------CceEEEEEEeEEeEEEccc
Confidence 543 2334555556666521 10 0001234677888877744
No 34
>PRK02793 phi X174 lysis protein; Provisional
Probab=75.53 E-value=13 Score=29.59 Aligned_cols=50 Identities=26% Similarity=0.270 Sum_probs=42.8
Q ss_pred HHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccc
Q 018377 274 LKLKLNVMDSQLREAEHTIRKLMEARKLATREKDMLKHELEVLRRKSNLR 323 (357)
Q Consensus 274 l~~k~~~~~~~~~ea~~~i~kl~ee~~~~~~~~~~L~~El~~lr~~~~~~ 323 (357)
+..++..||.++.-.+.+|..|.+.--..-++.+.|+.+|..|+.+-...
T Consensus 6 ~e~Ri~~LE~~lafQe~tIe~Ln~~v~~Qq~~I~~L~~~l~~L~~rl~~~ 55 (72)
T PRK02793 6 LEARLAELESRLAFQEITIEELNVTVTAHEMEMAKLRDHLRLLTEKLKAS 55 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34568889999999999999999999888889999999999997765443
No 35
>PRK00295 hypothetical protein; Provisional
Probab=75.16 E-value=13 Score=29.26 Aligned_cols=46 Identities=15% Similarity=0.216 Sum_probs=39.8
Q ss_pred hhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 018377 277 KLNVMDSQLREAEHTIRKLMEARKLATREKDMLKHELEVLRRKSNL 322 (357)
Q Consensus 277 k~~~~~~~~~ea~~~i~kl~ee~~~~~~~~~~L~~El~~lr~~~~~ 322 (357)
++..||.++.-.+.+|..|++.--.--++.+.|+.+|..|+.+-..
T Consensus 6 Ri~~LE~kla~qE~tie~Ln~~v~~Qq~~I~~L~~ql~~L~~rl~~ 51 (68)
T PRK00295 6 RVTELESRQAFQDDTIQALNDVLVEQQRVIERLQLQMAALIKRQEE 51 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4778899999999999999999888888899999999999776544
No 36
>PRK00736 hypothetical protein; Provisional
Probab=74.74 E-value=13 Score=29.18 Aligned_cols=46 Identities=17% Similarity=0.285 Sum_probs=40.0
Q ss_pred hhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 018377 277 KLNVMDSQLREAEHTIRKLMEARKLATREKDMLKHELEVLRRKSNL 322 (357)
Q Consensus 277 k~~~~~~~~~ea~~~i~kl~ee~~~~~~~~~~L~~El~~lr~~~~~ 322 (357)
++..||.++.-.+.+|..|++.--.--++.+.|+.+|..|+.+-..
T Consensus 6 Ri~~LE~klafqe~tie~Ln~~v~~Qq~~i~~L~~ql~~L~~rl~~ 51 (68)
T PRK00736 6 RLTELEIRVAEQEKTIEELSDQLAEQWKTVEQMRKKLDALTERFLS 51 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4678899999999999999999888888899999999999766543
No 37
>COG3121 FimC P pilus assembly protein, chaperone PapD [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=74.63 E-value=43 Score=31.93 Aligned_cols=111 Identities=13% Similarity=0.152 Sum_probs=76.3
Q ss_pred eEEeCCeeEEeccCCceeEEEEEEEcCCCCeEEEEEeeC-------CCCcEEEeCCcceeCCCCeEEEEEEeccCCCCCC
Q 018377 6 LDIQPLELKFTFEVKKQSTCVIQLGNKSDQCVAFKVKTT-------SPKKYCVRPNVSIIKPKAISDFTVTMQAQRVAPP 78 (357)
Q Consensus 6 L~I~P~EL~F~~e~~kq~sc~LtLtN~Sd~~VAFKVKTT-------sPkkY~VRPn~GvI~P~ss~~V~VTmqa~~e~P~ 78 (357)
+.|.+..+.|+.... ..+++|.|..+.++.-.+.-- ...-|.|-|+.-.|.||+.-.|.|.+.+. ..|.
T Consensus 29 v~i~~TRiI~~~~~k---~~sl~l~N~~~~p~LvQ~wvd~~~~~~~~~~pfvvtPPv~rl~p~~~q~vRi~~~~~-~lP~ 104 (235)
T COG3121 29 VVLGGTRIIYPAGDK---ETSLTLRNDGNQPYLVQSWVDDGLEPEKSTVPFVVTPPVFRLEPGQEQQLRILYTGN-KLPA 104 (235)
T ss_pred EEecceEEEEeCCCc---eeEEEEEcCCCCCEEEEEEEcCCCCCccccCCEEecCCeEEECCCCccEEEEEecCC-CCCC
Confidence 566777888877654 779999998889998886544 23459999999999999999999999886 4564
Q ss_pred CCCCCceEEEEEEEeCCCCCccchhhhhhcccCCCceeEEEeEEEEeCCC
Q 018377 79 DLQCKDKFLIQGIVVPFGTSDEDITSDMFAKDSGKYVEEKKLRVILMSPP 128 (357)
Q Consensus 79 d~q~kDKFLVQSv~v~~g~t~~di~~e~Fkk~~~~~V~E~KLrV~fv~p~ 128 (357)
| -..-|-+..-.+|+... +.... + .-.....+++++-|-++.
T Consensus 105 d--rEslf~lnv~eIPp~~~--~~~~~--n--~lq~a~r~riKlf~RP~~ 146 (235)
T COG3121 105 D--RESLFRLNVDEIPPKSK--DDKGP--N--VLQLALRSRIKLFYRPAG 146 (235)
T ss_pred C--ceeEEEEEeeecCCCCc--ccCCc--c--eEEEEeeeeeeEEECccc
Confidence 4 24456666666665321 10000 0 013456788888887554
No 38
>PF06280 DUF1034: Fn3-like domain (DUF1034); InterPro: IPR010435 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain of unknown function is present in bacterial and plant peptidases belonging to MEROPS peptidase family S8 (subfamily S8A subtilisin, clan SB). It is C-terminal to and adjacent to the S8 peptidase domain and can be found in conjunction with the PA (Protease associated) domain (IPR003137 from INTERPRO) and additionally in Gram-positive bacteria with the surface protein anchor domain (IPR001899 from INTERPRO).; GO: 0004252 serine-type endopeptidase activity, 0005618 cell wall, 0016020 membrane; PDB: 3EIF_A 1XF1_B.
Probab=74.25 E-value=8.9 Score=31.79 Aligned_cols=55 Identities=18% Similarity=0.299 Sum_probs=33.6
Q ss_pred CceeEEEEEEEcCCCCeEEEEEeeC-----C---CCcEEEe-------------CCcceeCCCCeEEEEEEeccCC
Q 018377 20 KKQSTCVIQLGNKSDQCVAFKVKTT-----S---PKKYCVR-------------PNVSIIKPKAISDFTVTMQAQR 74 (357)
Q Consensus 20 ~kq~sc~LtLtN~Sd~~VAFKVKTT-----s---PkkY~VR-------------Pn~GvI~P~ss~~V~VTmqa~~ 74 (357)
++..+..|+|+|.+++.+.|++.-. . .+.|... |..=.|.||++.+|.|++....
T Consensus 7 ~~~~~~~itl~N~~~~~~ty~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~vTV~ag~s~~v~vti~~p~ 82 (112)
T PF06280_consen 7 GNKFSFTITLHNYGDKPVTYTLSHVPVLTDKTDTEEGYSILVPPVPSISTVSFSPDTVTVPAGQSKTVTVTITPPS 82 (112)
T ss_dssp -SEEEEEEEEEE-SSS-EEEEEEEE-EEEEEE--ETTEEEEEEEE----EEE---EEEEE-TTEEEEEEEEEE--G
T ss_pred CCceEEEEEEEECCCCCEEEEEeeEEEEeeEeeccCCcccccccccceeeEEeCCCeEEECCCCEEEEEEEEEehh
Confidence 3446889999999999999997654 1 1223221 2223588999999999988743
No 39
>PF05064 Nsp1_C: Nsp1-like C-terminal region; InterPro: IPR007758 The NSP1-like protein appears to be an essential component of the nuclear pore complex, for example preribosome nuclear export requires the Nup82p-Nup159p-Nsp1p complex. The C-terminal of Nsp1 is involved in binding Nup82 [], probably via coiled-coil formation [, ]. The family is related to the rotavirus nonstructural protein NSP1 which is the least conserved protein in the rotavirus genome. Its function in the replication process is not fully understood.; GO: 0017056 structural constituent of nuclear pore, 0005643 nuclear pore; PDB: 3T97_C.
Probab=69.73 E-value=13 Score=31.81 Aligned_cols=67 Identities=25% Similarity=0.285 Sum_probs=36.4
Q ss_pred ccccCCchhhHHHHHhhhHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 018377 253 ASELKPAKDILELKLAKDFEELKLKLNVMDSQLREAEHTIRKLMEARKLATREKDMLKHELEVLRRK 319 (357)
Q Consensus 253 ~~~~~~~~~~~~~~~~~d~~~l~~k~~~~~~~~~ea~~~i~kl~ee~~~~~~~~~~L~~El~~lr~~ 319 (357)
|.|+.|.=+..+..-++.|.+.-.+++..+..+-+...-|.+|..+-..+...-++|.|+|+.+...
T Consensus 20 Leeiin~W~~eLe~q~k~F~~qA~~V~~wDr~Lv~n~~~I~~L~~~v~~~~~~Q~~ld~~L~~ie~q 86 (116)
T PF05064_consen 20 LEEIINKWNKELEEQEKEFNEQATQVNAWDRQLVENGEKISKLYSEVQKAESEQKRLDQELDFIEAQ 86 (116)
T ss_dssp -----------------------------TCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444456667888888889999999999999999999999999999999999999998865
No 40
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=69.66 E-value=19 Score=30.77 Aligned_cols=47 Identities=23% Similarity=0.405 Sum_probs=26.0
Q ss_pred HHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018377 271 FEELKLKLNVMDSQLREAEHTIRKLMEARKLATREKDMLKHELEVLR 317 (357)
Q Consensus 271 ~~~l~~k~~~~~~~~~ea~~~i~kl~ee~~~~~~~~~~L~~El~~lr 317 (357)
+.+|...+..+-.++.+-+..|..|.||...-.-||+.|+.-|..+.
T Consensus 10 l~~le~~l~~l~~~~~~LK~~~~~l~EEN~~L~~EN~~Lr~~l~~~~ 56 (107)
T PF06156_consen 10 LDQLEQQLGQLLEELEELKKQLQELLEENARLRIENEHLRERLEELE 56 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33344444555555555556666666666555556666666555554
No 41
>PF07798 DUF1640: Protein of unknown function (DUF1640); InterPro: IPR024461 This family consists of uncharacterised proteins.
Probab=69.41 E-value=34 Score=31.09 Aligned_cols=40 Identities=18% Similarity=0.267 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHhhhccccccCCcchhhHHHHHHHHHHHHHh
Q 018377 307 DMLKHELEVLRRKSNLRRVQVGFPLLFVCMVALIGLVVGYL 347 (357)
Q Consensus 307 ~~L~~El~~lr~~~~~~~~~~gf~l~fv~~v~llg~~lGyl 347 (357)
.++..|+.-||......+.+ =.-+++-+++|.+++++||+
T Consensus 134 ~ki~~ei~~lr~~iE~~K~~-~lr~~~g~i~~~~a~~la~~ 173 (177)
T PF07798_consen 134 NKIDTEIANLRTEIESLKWD-TLRWLVGVIFGCVALVLAIL 173 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHH
Confidence 34444555555544432111 23345566677788888886
No 42
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=68.35 E-value=16 Score=36.00 Aligned_cols=69 Identities=19% Similarity=0.250 Sum_probs=55.5
Q ss_pred ccccCCchhhHHHHHhhhHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 018377 253 ASELKPAKDILELKLAKDFEELKLKLNVMDSQLREAEHTIRKLMEARKLATREKDMLKHELEVLRRKSN 321 (357)
Q Consensus 253 ~~~~~~~~~~~~~~~~~d~~~l~~k~~~~~~~~~ea~~~i~kl~ee~~~~~~~~~~L~~El~~lr~~~~ 321 (357)
++|.....+....++.++.+++..++..++.+..+...-|..+.++-+..-++..+|++|++.++..+.
T Consensus 29 ~~~~i~~~ds~l~~~~~~~~~~q~ei~~L~~qi~~~~~k~~~~~~~i~~~~~eik~l~~eI~~~~~~I~ 97 (265)
T COG3883 29 LSDKIQNQDSKLSELQKEKKNIQNEIESLDNQIEEIQSKIDELQKEIDQSKAEIKKLQKEIAELKENIV 97 (265)
T ss_pred hhhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334333444556778888888888999999999999999999999999999999999999998876554
No 43
>PRK15218 fimbrial chaperone protein PegB; Provisional
Probab=68.04 E-value=83 Score=30.06 Aligned_cols=110 Identities=14% Similarity=0.251 Sum_probs=66.0
Q ss_pred eEEeCCeeEEeccCCceeEEEEEEEcCCCCeEEEEEeeCCC----------CcEEEeCCcceeCCCCeEEEEEEeccCCC
Q 018377 6 LDIQPLELKFTFEVKKQSTCVIQLGNKSDQCVAFKVKTTSP----------KKYCVRPNVSIIKPKAISDFTVTMQAQRV 75 (357)
Q Consensus 6 L~I~P~EL~F~~e~~kq~sc~LtLtN~Sd~~VAFKVKTTsP----------kkY~VRPn~GvI~P~ss~~V~VTmqa~~e 75 (357)
|.++-+.+.|+.. ....+++|.|.++.+..-.....+. .-|.|.|+.-.|+|++...+.|.... ..
T Consensus 20 i~l~~TRvIy~~~---~~~~si~i~N~~~~pyLvQsWvd~~~~~~~~~~~~~pFivtPPlfRl~p~~~~~lRI~~~~-~~ 95 (226)
T PRK15218 20 IYIYGTRIIYPAQ---KKDITVQLMNDGKRSSLIQAWIDNGDTSLPPEKLQVPFIMTPPVIRVAANSGQQLKIKKLA-NN 95 (226)
T ss_pred EEeCceEEEEcCC---CcEEEEEEEcCCCCcEEEEEEEeCCCCCCCcccccCCEEECCCeEEECCCCceEEEEEECC-CC
Confidence 3344456777653 3377999999998764333322211 14999999999999999999999864 34
Q ss_pred CCCCCCCCceEEEEEEEeCCCCCccchhhhhhcccCCCceeEEEeEEEEeCC
Q 018377 76 APPDLQCKDKFLIQGIVVPFGTSDEDITSDMFAKDSGKYVEEKKLRVILMSP 127 (357)
Q Consensus 76 ~P~d~q~kDKFLVQSv~v~~g~t~~di~~e~Fkk~~~~~V~E~KLrV~fv~p 127 (357)
.|.| -.--|-+....+|+.....+ .+..=......++++-|-+.
T Consensus 96 LP~D--RESlfwlnv~~IPp~~~~~~------~~n~L~iairtrIKLfYRP~ 139 (226)
T PRK15218 96 LPGD--RESLFYLNVLDIPPNSDENK------DKNIIKFALQNRIKLIYRPP 139 (226)
T ss_pred CCcc--eeEEEEEEEEEcCCCCCCcC------cCcEEEEEeeeEEEEEEccc
Confidence 5644 13345566666665211000 00001234667788777643
No 44
>TIGR03079 CH4_NH3mon_ox_B methane monooxygenase/ammonia monooxygenase, subunit B. Both ammonia oxidizers such as Nitrosomonas europaea and methanotrophs (obligate methane oxidizers) such as Methylococcus capsulatus each can grow only on their own characteristic substrate. However, both groups have the ability to oxidize both substrates, and so the relevant enzymes must be named here according to their ability to oxidze both. The protein family represented here reflects subunit B of both the particulate methane monooxygenase of methylotrophs and the ammonia monooxygenase of nitrifying bacteria.
Probab=67.50 E-value=14 Score=38.27 Aligned_cols=55 Identities=15% Similarity=0.240 Sum_probs=40.7
Q ss_pred CCceeEEEEEEEcCCCCeEEEEEeeCC------C-CcEEEeCCcc--------------eeCCCCeEEEEEEeccC
Q 018377 19 VKKQSTCVIQLGNKSDQCVAFKVKTTS------P-KKYCVRPNVS--------------IIKPKAISDFTVTMQAQ 73 (357)
Q Consensus 19 ~~kq~sc~LtLtN~Sd~~VAFKVKTTs------P-kkY~VRPn~G--------------vI~P~ss~~V~VTmqa~ 73 (357)
.++..+-+++++|+++++|..+==+|+ | +.|...|+.. -|.||++.+|.|..|.-
T Consensus 280 PGR~l~~~~~VTN~g~~~vrlgEF~TA~vRFlN~~~v~~~~~~yP~~lla~GL~v~d~~pI~PGETr~v~v~aqdA 355 (399)
T TIGR03079 280 PGRALRVTMEITNNGDQVISIGEFTTAGIRFMNANGVRVLDPDYPRELLAEGLEVDDQSAIAPGETVEVKMEAKDA 355 (399)
T ss_pred CCcEEEEEEEEEcCCCCceEEEeEeecceEeeCcccccccCCCChHHHhhccceeCCCCCcCCCcceEEEEEEehh
Confidence 467888899999999999988844443 4 4444444432 38999999999998753
No 45
>PF10779 XhlA: Haemolysin XhlA; InterPro: IPR019715 Haemolysin XhlA is a cell-surface associated haemolysin that lyses the two most prevalent types of insect immune cells (granulocytes and plasmatocytes) as well as rabbit and horse erythrocytes [].
Probab=67.20 E-value=51 Score=25.75 Aligned_cols=66 Identities=21% Similarity=0.333 Sum_probs=32.8
Q ss_pred HHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccCCcchhh-HHHHHHHHHHHHHhcc
Q 018377 275 KLKLNVMDSQLREAEHTIRKLMEARKLATREKDMLKHELEVLRRKSNLRRVQVGFPLLF-VCMVALIGLVVGYLSH 349 (357)
Q Consensus 275 ~~k~~~~~~~~~ea~~~i~kl~ee~~~~~~~~~~L~~El~~lr~~~~~~~~~~gf~l~f-v~~v~llg~~lGyl~~ 349 (357)
+.++...+.++.+-+.-|.+|..-....-++...+.+.|+-+..- . -+++ .++=|+++.++||++|
T Consensus 5 ~e~l~~ie~~l~~~~~~i~~lE~~~~~~e~~i~~~~~~l~~I~~n--~-------kW~~r~iiGaiI~~i~~~i~K 71 (71)
T PF10779_consen 5 KEKLNRIETKLDNHEERIDKLEKRDAANEKDIKNLNKQLEKIKSN--T-------KWIWRTIIGAIITAIIYLIIK 71 (71)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--H-------HHHHHHHHHHHHHHHHHHHhC
Confidence 345556666666655555555322222222234566666665521 1 1222 3444566667777764
No 46
>smart00809 Alpha_adaptinC2 Adaptin C-terminal domain. Adaptins are components of the adaptor complexes which link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. Gamma-adaptin is a subunit of the golgi adaptor. Alpha adaptin is a heterotetramer that regulates clathrin-bud formation. The carboxyl-terminal appendage of the alpha subunit regulates translocation of endocytic accessory proteins to the bud site. This Ig-fold domain is found in alpha, beta and gamma adaptins and consists of a beta-sandwich containing 7 strands in 2 beta-sheets in a greek-key topology PUBMED:10430869, PUBMED:12176391. The adaptor appendage contains an additional N-terminal strand.
Probab=65.95 E-value=48 Score=26.59 Aligned_cols=53 Identities=15% Similarity=0.255 Sum_probs=40.0
Q ss_pred CceeEEEEEEEcCCCCeEE-EEEeeCCCCcEEEe--CCc-ceeCCCCeEEEEEEecc
Q 018377 20 KKQSTCVIQLGNKSDQCVA-FKVKTTSPKKYCVR--PNV-SIIKPKAISDFTVTMQA 72 (357)
Q Consensus 20 ~kq~sc~LtLtN~Sd~~VA-FKVKTTsPkkY~VR--Pn~-GvI~P~ss~~V~VTmqa 72 (357)
+......+...|.+..++- |.+.-..|+-+.++ |.. ..|.||+.+.-.+.+..
T Consensus 17 ~~~~~i~~~~~N~s~~~it~f~~~~avpk~~~l~l~~~s~~~l~p~~~i~q~~~i~~ 73 (104)
T smart00809 17 PGLIRITLTFTNKSPSPITNFSFQAAVPKSLKLQLQPPSSPTLPPGGQITQVLKVEN 73 (104)
T ss_pred CCeEEEEEEEEeCCCCeeeeEEEEEEcccceEEEEcCCCCCccCCCCCEEEEEEEEC
Confidence 3567889999999988776 88888788877776 443 47889887776666654
No 47
>PRK15224 pili assembly chaperone protein SafB; Provisional
Probab=65.14 E-value=93 Score=30.03 Aligned_cols=81 Identities=12% Similarity=0.182 Sum_probs=55.0
Q ss_pred EEeCCeeEEeccCCceeEEEEEEEcCCCCeEEEEEee----CC---CCcEEEeCCcceeCCCCeEEEEEEeccCCCCCCC
Q 018377 7 DIQPLELKFTFEVKKQSTCVIQLGNKSDQCVAFKVKT----TS---PKKYCVRPNVSIIKPKAISDFTVTMQAQRVAPPD 79 (357)
Q Consensus 7 ~I~P~EL~F~~e~~kq~sc~LtLtN~Sd~~VAFKVKT----Ts---PkkY~VRPn~GvI~P~ss~~V~VTmqa~~e~P~d 79 (357)
.++-+.+.|+... ...+++|.|.++.+ |=|++ .+ ..-|.|.|+.-.|+|++...+.|.... ...|.|
T Consensus 31 ~l~~TRvIy~~~~---k~~sl~v~N~~~~p--yLvQsWvd~~~~~~~~pFivtPPlfRlep~~~~~lRI~~~~-~~LP~D 104 (237)
T PRK15224 31 KLGATRVIYHAGT---AGATLSVSNPQNYP--ILVQSSVKAADKSSPAPFLVMPPLFRLEANQQSQLRIVRTG-GDMPTD 104 (237)
T ss_pred EeCceEEEEeCCC---cEEEEEEEcCCCCc--EEEEEEEeCCCCCccCCEEECCCeEEECCCCceEEEEEECC-CCCCCc
Confidence 3444567776533 47799999998775 55554 11 123999999999999999999999873 346644
Q ss_pred CCCCceEEEEEEEeCC
Q 018377 80 LQCKDKFLIQGIVVPF 95 (357)
Q Consensus 80 ~q~kDKFLVQSv~v~~ 95 (357)
-.--|-+....+|+
T Consensus 105 --RESlFwlnv~~IPp 118 (237)
T PRK15224 105 --RETLQWVCIKAVPP 118 (237)
T ss_pred --eeEEEEEEEEEcCC
Confidence 12345555566665
No 48
>PRK15233 putative fimbrial chaperone protein SefB; Provisional
Probab=65.01 E-value=1.1e+02 Score=29.86 Aligned_cols=80 Identities=11% Similarity=0.147 Sum_probs=53.0
Q ss_pred EeCCeeEEeccCCceeEEEEEEEcCCCCeEEEEEee----CC---CCcEEEeCCcceeCCCCeEEEEEEeccCCCCCCCC
Q 018377 8 IQPLELKFTFEVKKQSTCVIQLGNKSDQCVAFKVKT----TS---PKKYCVRPNVSIIKPKAISDFTVTMQAQRVAPPDL 80 (357)
Q Consensus 8 I~P~EL~F~~e~~kq~sc~LtLtN~Sd~~VAFKVKT----Ts---PkkY~VRPn~GvI~P~ss~~V~VTmqa~~e~P~d~ 80 (357)
++-..+.|+... ...+++|.|.++.+ |-|++ .+ ..-|.|.|+.-.|+|++...+.|.... ...|.|-
T Consensus 44 l~~TRvIy~~~~---~~~sl~i~N~~~~p--~LvQsWvd~~~~~~~~pFiVtPPLfRLep~~~~~lRIi~~~-~~LP~DR 117 (246)
T PRK15233 44 LGTTRVIYKEDA---PSTSFWIMNEKEYP--ILVQTQVYNDDKSSKAPFIVTPPILKVESNARTRLKVIPTS-NLFNKNE 117 (246)
T ss_pred eCceEEEEeCCC---cEEEEEEEcCCCCc--EEEEEEEecCCCCccCCEEECCCeEEECCCCceEEEEEECC-CCCCcCc
Confidence 333456665443 47799999987776 44443 11 124999999999999999999999874 3455441
Q ss_pred CCCceEEEEEEEeCC
Q 018377 81 QCKDKFLIQGIVVPF 95 (357)
Q Consensus 81 q~kDKFLVQSv~v~~ 95 (357)
.--|-+....+|+
T Consensus 118 --ESlfwlnv~~IPp 130 (246)
T PRK15233 118 --ESLYWLCVKGVPP 130 (246)
T ss_pred --eEEEEEEEEEcCC
Confidence 2235666666665
No 49
>PF10633 NPCBM_assoc: NPCBM-associated, NEW3 domain of alpha-galactosidase; InterPro: IPR018905 This domain has been named NEW3, but its function is not known. It is found on proteins which are bacterial galactosidases [].; PDB: 1EUT_A 2BZD_A 1WCQ_C 2BER_A 1W8O_A 1EUU_A 1W8N_A.
Probab=64.80 E-value=12 Score=29.08 Aligned_cols=57 Identities=14% Similarity=0.209 Sum_probs=32.7
Q ss_pred CceeEEEEEEEcCCCCeE-EEEEeeCCCCcEE--EeCCc-ceeCCCCeEEEEEEeccCCCC
Q 018377 20 KKQSTCVIQLGNKSDQCV-AFKVKTTSPKKYC--VRPNV-SIIKPKAISDFTVTMQAQRVA 76 (357)
Q Consensus 20 ~kq~sc~LtLtN~Sd~~V-AFKVKTTsPkkY~--VRPn~-GvI~P~ss~~V~VTmqa~~e~ 76 (357)
+....-.++++|..+.++ ..++.-..|.-+. +.|.. +-|.||++..+.+++.+...+
T Consensus 4 G~~~~~~~tv~N~g~~~~~~v~~~l~~P~GW~~~~~~~~~~~l~pG~s~~~~~~V~vp~~a 64 (78)
T PF10633_consen 4 GETVTVTLTVTNTGTAPLTNVSLSLSLPEGWTVSASPASVPSLPPGESVTVTFTVTVPADA 64 (78)
T ss_dssp TEEEEEEEEEE--SSS-BSS-EEEEE--TTSE---EEEEE--B-TTSEEEEEEEEEE-TT-
T ss_pred CCEEEEEEEEEECCCCceeeEEEEEeCCCCccccCCccccccCCCCCEEEEEEEEECCCCC
Confidence 445677899999976542 2444444588877 55554 579999999999999876543
No 50
>PF11166 DUF2951: Protein of unknown function (DUF2951); InterPro: IPR021337 This family of proteins has no known function. It has a highly conserved sequence.
Probab=64.79 E-value=34 Score=29.18 Aligned_cols=22 Identities=18% Similarity=0.330 Sum_probs=15.9
Q ss_pred CcchhhHHHHHHHHHHHHHhcc
Q 018377 328 GFPLLFVCMVALIGLVVGYLSH 349 (357)
Q Consensus 328 gf~l~fv~~v~llg~~lGyl~~ 349 (357)
.+-=+=..+.||+|+++|-|+-
T Consensus 68 nir~~KmwilGlvgTi~gslii 89 (98)
T PF11166_consen 68 NIRDIKMWILGLVGTIFGSLII 89 (98)
T ss_pred hHHHHHHHHHHHHHHHHHHHHH
Confidence 3444556678999999998764
No 51
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=63.33 E-value=32 Score=35.15 Aligned_cols=65 Identities=15% Similarity=0.253 Sum_probs=51.8
Q ss_pred HHHHHhhhHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccCCcchh
Q 018377 263 LELKLAKDFEELKLKLNVMDSQLREAEHTIRKLMEARKLATREKDMLKHELEVLRRKSNLRRVQVGFPLL 332 (357)
Q Consensus 263 ~~~~~~~d~~~l~~k~~~~~~~~~ea~~~i~kl~ee~~~~~~~~~~L~~El~~lr~~~~~~~~~~gf~l~ 332 (357)
++.++..++...+.+|+..+.+..++...++.++.+-..-.++.++.++||+. +++. ...|=||+
T Consensus 267 qle~l~~eYr~~~~~ls~~~~~y~~~s~~V~~~t~~L~~IseeLe~vK~emee---rg~~--mtD~sPlv 331 (359)
T PF10498_consen 267 QLEPLIQEYRSAQDELSEVQEKYKQASEGVSERTRELAEISEELEQVKQEMEE---RGSS--MTDGSPLV 331 (359)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH---hcCC--CCCCCHHH
Confidence 45667777888888999999999999999999999999999999999999885 3333 23566654
No 52
>PF05546 She9_MDM33: She9 / Mdm33 family; InterPro: IPR008839 Members of this family are mitochondrial inner membrane proteins with a role in inner mitochondrial membrane organisation and biogenesis []. The yeast Mdm33 protein assembles into an oligomeric complex in the inner membrane where it performs homotypic protein-protein interactions. It has been suggested that Mdm33 plays a distinct role, possibly involved in fission of the mitochondrial inner membrane [].
Probab=63.02 E-value=24 Score=33.74 Aligned_cols=53 Identities=23% Similarity=0.404 Sum_probs=47.1
Q ss_pred hhHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHhhhc
Q 018377 269 KDFEELKLKLNVMDSQLREAEHTIRKLMEARKLATREKDMLKHELE-VLRRKSN 321 (357)
Q Consensus 269 ~d~~~l~~k~~~~~~~~~ea~~~i~kl~ee~~~~~~~~~~L~~El~-~lr~~~~ 321 (357)
..++.||.....+|.++.+|...+...+.+-..|++++...|.|+- +|-||.+
T Consensus 32 s~Ie~LK~~i~~~E~~l~~~r~~~~~aK~~Y~~ai~~Rs~sQrEvn~LLqRK~s 85 (207)
T PF05546_consen 32 SEIEKLKKSIEELEDELEAARQEVREAKAAYDDAIQQRSSSQREVNELLQRKHS 85 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccC
Confidence 4678888889999999999999999999999999999999999986 6666654
No 53
>PRK15253 putative fimbrial assembly chaperone protein StcB; Provisional
Probab=61.86 E-value=1.2e+02 Score=29.20 Aligned_cols=109 Identities=15% Similarity=0.266 Sum_probs=65.1
Q ss_pred EEeCCeeEEeccCCceeEEEEEEEcCCCCeEEEEEeeCC------C----CcEEEeCCcceeCCCCeEEEEEEeccCCCC
Q 018377 7 DIQPLELKFTFEVKKQSTCVIQLGNKSDQCVAFKVKTTS------P----KKYCVRPNVSIIKPKAISDFTVTMQAQRVA 76 (357)
Q Consensus 7 ~I~P~EL~F~~e~~kq~sc~LtLtN~Sd~~VAFKVKTTs------P----kkY~VRPn~GvI~P~ss~~V~VTmqa~~e~ 76 (357)
.++-+.+.|+... ...+++|.|.++.+..-.....+ | .-|.|-|+.-.|+|++...|.|.... ...
T Consensus 36 ~l~~TRvIy~~~~---k~~sv~i~N~~~~pyLvQsWvd~~~~~~~~~~~~~pFivtPPlfRl~p~~~~~lRI~~~~-~~L 111 (242)
T PRK15253 36 VIYGTRVIYPAEK---KEVVVQLVNQGEQASLVQSWIDDGNTSLPPEKIQVPFMLTPPVARVAAESGQQIKIKKMP-NSL 111 (242)
T ss_pred EeCceEEEEeCCC---ceEEEEEEcCCCCcEEEEEEEECCCCCCCcccccCCEEECCCeEEECCCCceEEEEEECC-CCC
Confidence 3344467776533 47799999999876443332211 1 24999999999999999999998764 345
Q ss_pred CCCCCCCceEEEEEEEeCCCCCccchhhhhhcccCCCceeEEEeEEEEeCC
Q 018377 77 PPDLQCKDKFLIQGIVVPFGTSDEDITSDMFAKDSGKYVEEKKLRVILMSP 127 (357)
Q Consensus 77 P~d~q~kDKFLVQSv~v~~g~t~~di~~e~Fkk~~~~~V~E~KLrV~fv~p 127 (357)
|.| -.--|-+....+|+... + . + .+..=......++++-|-+.
T Consensus 112 P~D--RESlfwlnv~~IPp~~~--~-~-~--~~n~l~iairtriKLFYRP~ 154 (242)
T PRK15253 112 PDN--KESLFYLNVLDIPPNSQ--E-N-A--GKNVLKFAMQNRIKLIWRPS 154 (242)
T ss_pred Ccc--eeEEEEEEEEEcCCCCC--C-c-C--cCcEEEEEeeeEEEEEEcch
Confidence 643 12345555566665211 1 0 0 00001234667788777643
No 54
>PRK15274 putative periplasmic fimbrial chaperone protein SteC; Provisional
Probab=61.80 E-value=1.2e+02 Score=29.58 Aligned_cols=107 Identities=11% Similarity=0.134 Sum_probs=65.2
Q ss_pred EEeCCeeEEeccCCceeEEEEEEEcCCCC-eEEEEEeeCC------CCcEEEeCCcceeCCCCeEEEEEEecc-CCCCCC
Q 018377 7 DIQPLELKFTFEVKKQSTCVIQLGNKSDQ-CVAFKVKTTS------PKKYCVRPNVSIIKPKAISDFTVTMQA-QRVAPP 78 (357)
Q Consensus 7 ~I~P~EL~F~~e~~kq~sc~LtLtN~Sd~-~VAFKVKTTs------PkkY~VRPn~GvI~P~ss~~V~VTmqa-~~e~P~ 78 (357)
.++-+.+.|+... ...+|+|.|.+++ ++.-.....+ ..-|.|.|+.-.|+|++...|.|.... ....|.
T Consensus 29 ~l~~TRvIy~e~~---~~~sv~v~N~~~~~p~LVQsWvdd~~~~~~~~pFivtPPLfRlep~~~q~lRI~~~~~~~~LP~ 105 (257)
T PRK15274 29 VPDRTRVIFNGNE---NSITVTLKNGNATLPYLAQAWLEDDKFAKDTRYFTALPPLQRIEPKSDGQVKVQPLPAAASLPQ 105 (257)
T ss_pred EeCceEEEEeCCC---ceEEEEEEeCCCCCcEEEEEEccCCCCCcccCCEEEcCCeEEECCCCceEEEEEECCCCCCCCC
Confidence 3334467777533 3779999999866 4443332211 114999999999999999999999875 244564
Q ss_pred CCCCCceEEEEEEEeCCCCCccchhhhhhcccCCCceeEEEeEEEEeCC
Q 018377 79 DLQCKDKFLIQGIVVPFGTSDEDITSDMFAKDSGKYVEEKKLRVILMSP 127 (357)
Q Consensus 79 d~q~kDKFLVQSv~v~~g~t~~di~~e~Fkk~~~~~V~E~KLrV~fv~p 127 (357)
| -.--|-+....+|+.. +. ...=......+|++-|-+.
T Consensus 106 D--RESlFwlNv~eIPp~~--~~-------~n~L~iairtrIKLFYRP~ 143 (257)
T PRK15274 106 D--RESLFYFNVREIPPKS--DK-------PNTLQLALQTRIKFFYRPV 143 (257)
T ss_pred c--eeEEEEEEEEEcCCCC--Cc-------CceEEEEeeeeeeeEEccc
Confidence 3 1234555666666521 00 0001234667788777643
No 55
>PRK13169 DNA replication intiation control protein YabA; Reviewed
Probab=60.31 E-value=37 Score=29.38 Aligned_cols=48 Identities=25% Similarity=0.405 Sum_probs=35.6
Q ss_pred hHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018377 270 DFEELKLKLNVMDSQLREAEHTIRKLMEARKLATREKDMLKHELEVLR 317 (357)
Q Consensus 270 d~~~l~~k~~~~~~~~~ea~~~i~kl~ee~~~~~~~~~~L~~El~~lr 317 (357)
-+.+|...+..+-.++.+-+..|..|-||...-.-||+.|+.-|+.+.
T Consensus 9 ~l~~le~~l~~l~~el~~LK~~~~el~EEN~~L~iEN~~Lr~~l~~~~ 56 (110)
T PRK13169 9 ALDDLEQNLGVLLKELGALKKQLAELLEENTALRLENDKLRERLEELE 56 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 344555556666777777788888888888888888888888888763
No 56
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=57.86 E-value=60 Score=29.16 Aligned_cols=53 Identities=23% Similarity=0.265 Sum_probs=35.0
Q ss_pred HhhhHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 018377 267 LAKDFEELKLKLNVMDSQLREAEHTIRKLMEARKLATREKDMLKHELEVLRRK 319 (357)
Q Consensus 267 ~~~d~~~l~~k~~~~~~~~~ea~~~i~kl~ee~~~~~~~~~~L~~El~~lr~~ 319 (357)
+-+|.+.....+..+....+-+.+.|..|.++-...+++++.|..||+-||+.
T Consensus 29 LEreLe~~q~~~e~~~~daEn~k~eie~L~~el~~lt~el~~L~~EL~~l~sE 81 (140)
T PF10473_consen 29 LERELEMSQENKECLILDAENSKAEIETLEEELEELTSELNQLELELDTLRSE 81 (140)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555554444444555555566777777777777777777777777777754
No 57
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=56.24 E-value=43 Score=26.78 Aligned_cols=42 Identities=26% Similarity=0.359 Sum_probs=23.6
Q ss_pred hhhhhhhhHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHhh
Q 018377 278 LNVMDSQLREAEHTIRKLMEARKL-------ATREKDMLKHELEVLRRK 319 (357)
Q Consensus 278 ~~~~~~~~~ea~~~i~kl~ee~~~-------~~~~~~~L~~El~~lr~~ 319 (357)
+..++.|...|-.+|..|+.|... .-+++..|++|..-||..
T Consensus 6 l~~LE~ki~~aveti~~Lq~e~eeLke~n~~L~~e~~~L~~en~~L~~e 54 (72)
T PF06005_consen 6 LEQLEEKIQQAVETIALLQMENEELKEKNNELKEENEELKEENEQLKQE 54 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 345666666666666655544443 334456666666665543
No 58
>PF13544 N_methyl_2: Type IV pilin N-term methylation site GFxxxE; PDB: 3SOK_A 2HIL_L 1AY2_A 2PIL_A 2HI2_A 1OQW_A.
Probab=56.00 E-value=11 Score=25.41 Aligned_cols=20 Identities=30% Similarity=0.361 Sum_probs=8.5
Q ss_pred cccCCcchhhHHHHHHHHHH
Q 018377 324 RVQVGFPLLFVCMVALIGLV 343 (357)
Q Consensus 324 ~~~~gf~l~fv~~v~llg~~ 343 (357)
+.|.||.|+=++++-.|+.+
T Consensus 11 ~~~~GFTLiEllVa~~I~~i 30 (31)
T PF13544_consen 11 RRQRGFTLIELLVAMAILAI 30 (31)
T ss_dssp -------HHHHHHHHHHHHH
T ss_pred cccCCccHHHHHHHHHHHHH
Confidence 36789999987666555544
No 59
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=55.43 E-value=41 Score=36.61 Aligned_cols=63 Identities=19% Similarity=0.297 Sum_probs=53.4
Q ss_pred HHHhhhHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccCCcch
Q 018377 265 LKLAKDFEELKLKLNVMDSQLREAEHTIRKLMEARKLATREKDMLKHELEVLRRKSNLRRVQVGFPL 331 (357)
Q Consensus 265 ~~~~~d~~~l~~k~~~~~~~~~ea~~~i~kl~ee~~~~~~~~~~L~~El~~lr~~~~~~~~~~gf~l 331 (357)
..+.+|++..+.=.++++.+...-...+.+|.+|-..-..|+.+||+|-+-|++....+ ||+.
T Consensus 269 ~~L~~D~nK~~~y~~~~~~k~~~~~~~l~~l~~Eie~kEeE~e~lq~~~d~Lk~~Ie~Q----~iS~ 331 (581)
T KOG0995|consen 269 ARLQDDVNKFQAYVSQMKSKKQHMEKKLEMLKSEIEEKEEEIEKLQKENDELKKQIELQ----GISG 331 (581)
T ss_pred HHHHhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc----CCCH
Confidence 34678888888888889999888889999999999999999999999999999887543 6653
No 60
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=55.10 E-value=68 Score=25.65 Aligned_cols=28 Identities=21% Similarity=0.284 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 018377 292 IRKLMEARKLATREKDMLKHELEVLRRK 319 (357)
Q Consensus 292 i~kl~ee~~~~~~~~~~L~~El~~lr~~ 319 (357)
-..|.+++..--+++++|++|-.....+
T Consensus 34 n~~L~~e~~~L~~en~~L~~e~~~~~~r 61 (72)
T PF06005_consen 34 NNELKEENEELKEENEQLKQERNAWQER 61 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344477777788889999888766654
No 61
>PRK15285 putative fimbrial chaperone protein StfD; Provisional
Probab=54.98 E-value=2e+02 Score=27.90 Aligned_cols=106 Identities=16% Similarity=0.164 Sum_probs=64.1
Q ss_pred EeCCeeEEeccCCceeEEEEEEEcCCCC-eEEEEEee--CCCC----cEEEeCCcceeCCCCeEEEEEEecc-CCCCCCC
Q 018377 8 IQPLELKFTFEVKKQSTCVIQLGNKSDQ-CVAFKVKT--TSPK----KYCVRPNVSIIKPKAISDFTVTMQA-QRVAPPD 79 (357)
Q Consensus 8 I~P~EL~F~~e~~kq~sc~LtLtN~Sd~-~VAFKVKT--TsPk----kY~VRPn~GvI~P~ss~~V~VTmqa-~~e~P~d 79 (357)
++-+.+.|+... ...+++|.|.+++ ++.-.... .+.+ -|.|-|+.-.|+||+...+.|.... ....|.|
T Consensus 29 l~~TRVIy~~~~---~~~sv~i~N~~~~~p~LvQsWvd~~~~~~~~~pFiVtPPlfRl~p~~~~~lRI~~~~~~~~LP~D 105 (250)
T PRK15285 29 PDRTRLVFRGED---KSISVDLKNANSKLPYLAQSWVEDEKGVKITSPLIVVPPVQRIEPSAIGQVKIQGMPALASLPQD 105 (250)
T ss_pred eCccEEEEcCCC---ceEEEEEEeCCCCCcEEEEEEeeCCCCCcccCCEEEcCCeEEECCCCceEEEEEECCCCCCCCCC
Confidence 334467777533 3779999999865 43333221 1211 3999999999999999999999875 2345644
Q ss_pred CCCCceEEEEEEEeCCCCCccchhhhhhcccCCCceeEEEeEEEEeCC
Q 018377 80 LQCKDKFLIQGIVVPFGTSDEDITSDMFAKDSGKYVEEKKLRVILMSP 127 (357)
Q Consensus 80 ~q~kDKFLVQSv~v~~g~t~~di~~e~Fkk~~~~~V~E~KLrV~fv~p 127 (357)
-.--|-+-...+|+.. +. +..=......+|++-|-+.
T Consensus 106 --RESlfwlnv~~IPp~~--~~-------~n~L~iairtrIKLfYRP~ 142 (250)
T PRK15285 106 --RETLFYYNVREIPPQS--DK-------PNTLQIALQTRIKVFYRPQ 142 (250)
T ss_pred --ceEEEEEEEEEcCCCC--CC-------CcEEEEEeeeeeeEEECcc
Confidence 1234555555666521 10 0001234667788777643
No 62
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=54.72 E-value=77 Score=27.13 Aligned_cols=50 Identities=24% Similarity=0.244 Sum_probs=45.5
Q ss_pred HHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 018377 273 ELKLKLNVMDSQLREAEHTIRKLMEARKLATREKDMLKHELEVLRRKSNL 322 (357)
Q Consensus 273 ~l~~k~~~~~~~~~ea~~~i~kl~ee~~~~~~~~~~L~~El~~lr~~~~~ 322 (357)
+|-..+..++.++.+.-+-|..|+..-..-+.||..|+-|-+-||++-..
T Consensus 5 ~l~~~l~~le~~l~~l~~~~~~LK~~~~~l~EEN~~L~~EN~~Lr~~l~~ 54 (107)
T PF06156_consen 5 ELFDRLDQLEQQLGQLLEELEELKKQLQELLEENARLRIENEHLRERLEE 54 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45567899999999999999999999999999999999999999988653
No 63
>PF00927 Transglut_C: Transglutaminase family, C-terminal ig like domain; InterPro: IPR008958 Synonym(s): Protein-glutamine gamma-glutamyltransferase, Fibrinoligase, TGase Transglutaminases catalyse the post-translational modification of proteins at glutamine residues, with formation of isopeptide bonds. Members of the transglutaminase family usually have three domains: N-terminal (IPR001102 from INTERPRO), middle (IPR013808 from INTERPRO) and C-terminal. The middle domain is usually well conserved, but family members can display major differences in their N- and C-terminal domains, although their overall structure is conserved []. This entry represents the C-terminal domain found in transglutaminases, which consists of an immunoglobulin-like beta-sandwich consisting of seven strands in two sheets with a Greek key topology. The best known transglutaminase is blood coagulation factor XIII, a plasma tetrameric protein composed of two catalytic A subunits and two non-catalytic B subunits. Factor XIII is responsible for cross-linking fibrin chains, thus stabilising the fibrin clot. Protein-glutamine gamma-glutamyltransferases (2.3.2.13 from EC) are calcium-dependent enzymes that catalyse the cross-linking of proteins by promoting the formation of isopeptide bonds between the gamma-carboxyl group of a glutamine in one polypeptide chain and the epsilon-amino group of a lysine in a second polypeptide chain. TGases also catalyse the conjugation of polyamines to proteins [, ].; GO: 0003810 protein-glutamine gamma-glutamyltransferase activity, 0018149 peptide cross-linking; PDB: 2XZZ_A 1GGY_B 1FIE_B 1GGU_B 1GGT_B 1F13_A 1QRK_B 1EVU_A 1EX0_B 1L9N_B ....
Probab=52.76 E-value=48 Score=27.07 Aligned_cols=57 Identities=21% Similarity=0.248 Sum_probs=40.8
Q ss_pred CCceeEEEEEEEcCCCCe--------EEEEEeeCCCC--cEEEeCCcceeCCCCeEEEEEEeccCCC
Q 018377 19 VKKQSTCVIQLGNKSDQC--------VAFKVKTTSPK--KYCVRPNVSIIKPKAISDFTVTMQAQRV 75 (357)
Q Consensus 19 ~~kq~sc~LtLtN~Sd~~--------VAFKVKTTsPk--kY~VRPn~GvI~P~ss~~V~VTmqa~~e 75 (357)
.++.....++++|+++.+ .|+-|--|.-. .....-..+-|.||++..+.+.+.+.+.
T Consensus 13 vG~d~~v~v~~~N~~~~~l~~v~~~l~~~~v~ytG~~~~~~~~~~~~~~l~p~~~~~~~~~i~p~~y 79 (107)
T PF00927_consen 13 VGQDFTVSVSFTNPSSEPLRNVSLNLCAFTVEYTGLTRDQFKKEKFEVTLKPGETKSVEVTITPSQY 79 (107)
T ss_dssp TTSEEEEEEEEEE-SSS-EECEEEEEEEEEEECTTTEEEEEEEEEEEEEE-TTEEEEEEEEE-HHSH
T ss_pred CCCCEEEEEEEEeCCcCccccceeEEEEEEEEECCcccccEeEEEcceeeCCCCEEEEEEEEEceeE
Confidence 578889999999999887 66666655432 2456677899999999999999977543
No 64
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=52.33 E-value=36 Score=31.58 Aligned_cols=56 Identities=32% Similarity=0.434 Sum_probs=34.0
Q ss_pred HHHhhhHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 018377 265 LKLAKDFEELKLKLNVMDSQLREAEHTIRKLMEARKLATREKDMLKHELEVLRRKSN 321 (357)
Q Consensus 265 ~~~~~d~~~l~~k~~~~~~~~~ea~~~i~kl~ee~~~~~~~~~~L~~El~~lr~~~~ 321 (357)
..+.+++++++.++..++.++.++.. =..=++||...+++.+.|++|+..|+.+-.
T Consensus 72 ~~l~~~~~~~~~~i~~l~~~i~~~~~-~r~~~~eR~~~l~~l~~l~~~~~~l~~el~ 127 (188)
T PF03962_consen 72 EKLQKEIEELEKKIEELEEKIEEAKK-GREESEEREELLEELEELKKELKELKKELE 127 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh-cccccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555555555555421 122236777778888888888888876654
No 65
>PF02883 Alpha_adaptinC2: Adaptin C-terminal domain; InterPro: IPR008152 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. AP (adaptor protein) complexes are found in coated vesicles and clathrin-coated pits. AP complexes connect cargo proteins and lipids to clathrin at vesicle budding sites, as well as binding accessory proteins that regulate coat assembly and disassembly (such as AP180, epsins and auxilin). There are different AP complexes in mammals. AP1 is responsible for the transport of lysosomal hydrolases between the TGN and endosomes []. AP2 associates with the plasma membrane and is responsible for endocytosis []. AP3 is responsible for protein trafficking to lysosomes and other related organelles []. AP4 is less well characterised. AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). For example, in AP1 these subunits are gamma-1-adaptin, beta-1-adaptin, mu-1 and sigma-1, while in AP2 they are alpha-adaptin, beta-2-adaptin, mu-2 and sigma-2. Each subunit has a specific function. Adaptins recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal ear (appendage) domains. Mu recognises tyrosine-based sorting signals within the cytoplasmic domains of transmembrane cargo proteins []. One function of clathrin and AP2 complex-mediated endocytosis is to regulate the number of GABA(A) receptors available at the cell surface []. GGAs (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) are a family of monomeric clathrin adaptor proteins that are conserved from yeasts to humans. GGAs regulate clathrin-mediated the transport of proteins (such as mannose 6-phosphate receptors) from the TGN to endosomes and lysosomes through interactions with TGN-sorting receptors, sometimes in conjunction with AP-1 [, ]. GGAs bind cargo, membranes, clathrin and accessory factors. GGA1, GGA2 and GGA3 all contain a domain homologous to the ear domain of gamma-adaptin. GGAs are composed of a single polypeptide with four domains: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The VHS domain is responsible for endocytosis and signal transduction, recognising transmembrane cargo through the ACLL sequence in the cytoplasmic domains of sorting receptors []. The GAT domain (also found in Tom1 proteins) interacts with ARF (ADP-ribosylation factor) to regulate membrane trafficking [], and with ubiquitin for receptor sorting []. The hinge region contains a clathrin box for recognition and binding to clathrin, similar to that found in AP adaptins. The GAE domain is similar to the AP gamma-adaptin ear domain, and is responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. This entry represents a beta-sandwich structural motif found in the appendage (ear) domain of alpha-, beta- and gamma-adaptin from AP clathrin adaptor complexes, and the GAE (gamma-adaptin ear) domain of GGA adaptor proteins. These domains have an immunoglobulin-like beta-sandwich fold containing 7 or 8 strands in 2 beta-sheets in a Greek key topology [, ]. Although these domains share a similar fold, there is little sequence identity between the alpha/beta-adaptins and gamma-adaptin/GAE. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030131 clathrin adaptor complex; PDB: 3MNM_B 3ZY7_B 1GYU_A 1GYW_B 2A7B_A 1GYV_A 2E9G_A 1E42_B 2G30_A 2IV9_B ....
Probab=51.83 E-value=56 Score=26.83 Aligned_cols=54 Identities=24% Similarity=0.401 Sum_probs=36.1
Q ss_pred CCceeEEEEEEEcCCCCeEE-EEEeeCCCCcEEEe--CC-cceeCCCCeEEEEEEecc
Q 018377 19 VKKQSTCVIQLGNKSDQCVA-FKVKTTSPKKYCVR--PN-VSIIKPKAISDFTVTMQA 72 (357)
Q Consensus 19 ~~kq~sc~LtLtN~Sd~~VA-FKVKTTsPkkY~VR--Pn-~GvI~P~ss~~V~VTmqa 72 (357)
......-.++..|++..++- |.+.-..|+.|.++ |. ...|.|+..+.-.+.+..
T Consensus 22 ~~~~~~i~~~f~N~s~~~it~f~~q~avpk~~~l~l~~~s~~~i~p~~~i~Q~~~v~~ 79 (115)
T PF02883_consen 22 NPNQGRIKLTFGNKSSQPITNFSFQAAVPKSFKLQLQPPSSSTIPPGQQITQVIKVEN 79 (115)
T ss_dssp ETTEEEEEEEEEE-SSS-BEEEEEEEEEBTTSEEEEEESS-SSB-TTTEEEEEEEEEE
T ss_pred CCCEEEEEEEEEECCCCCcceEEEEEEeccccEEEEeCCCCCeeCCCCeEEEEEEEEE
Confidence 35677889999999988776 77666666655554 55 569999887777666654
No 66
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=51.49 E-value=64 Score=28.20 Aligned_cols=50 Identities=28% Similarity=0.454 Sum_probs=34.0
Q ss_pred hHHHHHHhhhhhhhhhHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHhh
Q 018377 270 DFEELKLKLNVMDSQLREAEHTIRKLMEAR---KLATREKDMLKHELEVLRRK 319 (357)
Q Consensus 270 d~~~l~~k~~~~~~~~~ea~~~i~kl~ee~---~~~~~~~~~L~~El~~lr~~ 319 (357)
.+..++..+..++..-.+|..-|.+|+++. +....+...|++|+.-|..+
T Consensus 31 E~~~l~~el~~l~~~r~~l~~Eiv~l~~~~e~~~~~~~~~~~L~~el~~l~~r 83 (120)
T PF12325_consen 31 ELASLQEELARLEAERDELREEIVKLMEENEELRALKKEVEELEQELEELQQR 83 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344556666666666677777777776655 56667777888888777654
No 67
>PF10482 CtIP_N: Tumour-suppressor protein CtIP N-terminal domain; InterPro: IPR019518 CtIP is predominantly a nuclear protein that complexes with both BRCA1 and the BRCA1-associated RING domain protein (BARD1). At the protein level, CtIP expression varies with cell cycle progression in a pattern identical to that of BRCA1. Thus, the steady-state levels of CtIP polypeptides, which remain low in resting cells and G1 cycling cells, increase dramatically as Dividing cells traverse the G1/S boundary. CtIP can potentially modulate the functions ascribed to BRCA1 in transcriptional regulation, DNA repair, and/or cell cycle checkpoint control []. This N-terminal domain carries a coiled-coil region and is essential for homodimerisation of the protein []. The C-terminal domain is family CtIP_C and carries functionally important CxxC and RHR motifs, absence of which lead cells to grow slowly and show hypersensitivity to genotoxins [].
Probab=51.08 E-value=40 Score=29.69 Aligned_cols=39 Identities=26% Similarity=0.233 Sum_probs=32.2
Q ss_pred HHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018377 275 KLKLNVMDSQLREAEHTIRKLMEARKLATREKDMLKHEL 313 (357)
Q Consensus 275 ~~k~~~~~~~~~ea~~~i~kl~ee~~~~~~~~~~L~~El 313 (357)
+.+-.+.++.....-..|..|+-|+++--+||.+|+.|+
T Consensus 81 kK~qqefe~s~~qsLq~i~~L~nE~n~L~eEN~~L~eEl 119 (120)
T PF10482_consen 81 KKKQQEFESSHLQSLQHIFELTNEMNTLKEENKKLKEEL 119 (120)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHh
Confidence 444456666666777899999999999999999999987
No 68
>PF11120 DUF2636: Protein of unknown function (DUF2636); InterPro: IPR019995 Members of this protein family are found invariably together with genes of bacterial cellulose biosynthesis, and are presumed to be involved in the process []. Members average about 63 amino acids in length and are not uncharacterised. The gene has been designated both YhjT and BcsF (bacterial cellulose synthesis F).
Probab=50.22 E-value=12 Score=29.51 Aligned_cols=19 Identities=32% Similarity=0.518 Sum_probs=15.9
Q ss_pred hHHHHHHHHHHHHHhcccC
Q 018377 333 FVCMVALIGLVVGYLSHPQ 351 (357)
Q Consensus 333 fv~~v~llg~~lGyl~~~~ 351 (357)
.|++.|||++.|||++|..
T Consensus 9 ii~l~AlI~~pLGyl~~~~ 27 (62)
T PF11120_consen 9 IIILCALIFFPLGYLARRW 27 (62)
T ss_pred HHHHHHHHHHhHHHHHHHH
Confidence 4678899999999999843
No 69
>PF02753 PapD_C: Pili assembly chaperone PapD, C-terminal domain; InterPro: IPR016148 Most Gram-negative bacteria possess a supramolecular structure - the pili - on their surface, which mediates attachment to specific receptors. Many interactive subunits are required to assemble pili, but their assembly only takes place after translocation across the cytoplasmic membrane. Periplasmic chaperones assist pili assembly by binding to the subunits, thereby preventing premature aggregation [, ]. Pili chaperones are structurally, and possibly evolutionarily, related to the immunoglobulin superfamily [, ]: they contain two globular domains, with a topology identical to an immunoglobulin fold. This entry represents the C-terminal domain of pili assembly chaperone, and has a beta-sandwich fold consisting of eight strands in two sheets with a Greek key topology.; GO: 0007047 cellular cell wall organization, 0030288 outer membrane-bounded periplasmic space; PDB: 2UY7_C 2UY6_A 2W07_A 3GFU_A 3F65_F 3F6L_A 3F6I_A 3GEW_B 1PDK_A 2XG4_A ....
Probab=49.70 E-value=15 Score=27.72 Aligned_cols=43 Identities=19% Similarity=0.279 Sum_probs=28.0
Q ss_pred EEEEcCCCCeEEEE-EeeCCCC-cEEEeCCcceeCCCCeEEEEEEe
Q 018377 27 IQLGNKSDQCVAFK-VKTTSPK-KYCVRPNVSIIKPKAISDFTVTM 70 (357)
Q Consensus 27 LtLtN~Sd~~VAFK-VKTTsPk-kY~VRPn~GvI~P~ss~~V~VTm 70 (357)
|++.|+|..+|.|- ++....+ .+.+ ...+.|.|+++..+.+.-
T Consensus 1 L~v~NpTPy~vtl~~~~~~~~~~~~~~-~~~~mi~P~s~~~~~~~~ 45 (68)
T PF02753_consen 1 LTVKNPTPYYVTLSSLKLNGGGKKKKI-DNSGMIAPFSSKSFPLPA 45 (68)
T ss_dssp EEEEE-SSS-EEEEEEEETHHHCCEEC-CCETEE-TTEEEEEETST
T ss_pred CEEECCCCcEEEEEeeeeccccccccc-CCceEECCCCceEEeccC
Confidence 68999999999997 4444333 3444 444599999998887644
No 70
>PF06548 Kinesin-related: Kinesin-related; InterPro: IPR010544 This entry represents a domain within kinesin-related proteins from higher plants. Many proteins containing this domain also contain the IPR001752 from INTERPRO domain. Kinesins are ATP-driven microtubule motor proteins that produce directed force []. Some family members are associated with the phragmoplast, a structure composed mainly of microtubules that executes cytokinesis in higher plants [].
Probab=49.59 E-value=50 Score=35.13 Aligned_cols=34 Identities=32% Similarity=0.405 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHhhhc
Q 018377 288 AEHTIRKLMEAR----------KLATREKDMLKHELEVLRRKSN 321 (357)
Q Consensus 288 a~~~i~kl~ee~----------~~~~~~~~~L~~El~~lr~~~~ 321 (357)
|..++.+|+|.- ..+-|++.||.++|+.|+|+-.
T Consensus 429 agEllvrl~eaeea~~~a~~r~~~~eqe~ek~~kqiekLK~kh~ 472 (488)
T PF06548_consen 429 AGELLVRLREAEEAASVAQERAMDAEQENEKAKKQIEKLKRKHK 472 (488)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344667776543 3456899999999999998754
No 71
>PF06030 DUF916: Bacterial protein of unknown function (DUF916); InterPro: IPR010317 This family consists of putative cell surface proteins, from Firmicutes, of unknown function.
Probab=49.25 E-value=1.7e+02 Score=25.18 Aligned_cols=29 Identities=21% Similarity=0.347 Sum_probs=23.6
Q ss_pred EEeccCCceeEEEEEEEcCCCCeEEEEEe
Q 018377 14 KFTFEVKKQSTCVIQLGNKSDQCVAFKVK 42 (357)
Q Consensus 14 ~F~~e~~kq~sc~LtLtN~Sd~~VAFKVK 42 (357)
.+....+....-.++|+|.+++.+.|+|.
T Consensus 20 dL~~~P~q~~~l~v~i~N~s~~~~tv~v~ 48 (121)
T PF06030_consen 20 DLKVKPGQKQTLEVRITNNSDKEITVKVS 48 (121)
T ss_pred EEEeCCCCEEEEEEEEEeCCCCCEEEEEE
Confidence 34456677788899999999999999975
No 72
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=49.13 E-value=64 Score=26.61 Aligned_cols=46 Identities=13% Similarity=0.237 Sum_probs=24.3
Q ss_pred hHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018377 270 DFEELKLKLNVMDSQLREAEHTIRKLMEARKLATREKDMLKHELEV 315 (357)
Q Consensus 270 d~~~l~~k~~~~~~~~~ea~~~i~kl~ee~~~~~~~~~~L~~El~~ 315 (357)
.++=|++.+.++++|-.....-+.-++..|..-.++|++||+|-..
T Consensus 19 tI~LLqmEieELKekn~~L~~e~~~~~~~r~~L~~en~qLk~E~~~ 64 (79)
T PRK15422 19 TITLLQMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQNG 64 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 3444455555555554444444444444555556666666666543
No 73
>PRK13169 DNA replication intiation control protein YabA; Reviewed
Probab=48.70 E-value=80 Score=27.32 Aligned_cols=51 Identities=18% Similarity=0.150 Sum_probs=46.0
Q ss_pred HHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 018377 272 EELKLKLNVMDSQLREAEHTIRKLMEARKLATREKDMLKHELEVLRRKSNL 322 (357)
Q Consensus 272 ~~l~~k~~~~~~~~~ea~~~i~kl~ee~~~~~~~~~~L~~El~~lr~~~~~ 322 (357)
.++=.++..++.++...-+-|..|+..-...+.||..|+-|-+-||++-..
T Consensus 4 ~elfd~l~~le~~l~~l~~el~~LK~~~~el~EEN~~L~iEN~~Lr~~l~~ 54 (110)
T PRK13169 4 KEIFDALDDLEQNLGVLLKELGALKKQLAELLEENTALRLENDKLRERLEE 54 (110)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346667899999999999999999999999999999999999999998764
No 74
>PF13870 DUF4201: Domain of unknown function (DUF4201)
Probab=48.22 E-value=1.1e+02 Score=27.57 Aligned_cols=65 Identities=23% Similarity=0.381 Sum_probs=48.2
Q ss_pred HHHHhhhHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccCCcchh
Q 018377 264 ELKLAKDFEELKLKLNVMDSQLREAEHTIRKLMEARKLATREKDMLKHELEVLRRKSNLRRVQVGFPLL 332 (357)
Q Consensus 264 ~~~~~~d~~~l~~k~~~~~~~~~ea~~~i~kl~ee~~~~~~~~~~L~~El~~lr~~~~~~~~~~gf~l~ 332 (357)
..|+-+-...+......+...+.+....+.+++++-..+-.++++++....-||.++. ..|.|-+
T Consensus 79 L~h~keKl~~~~~~~~~l~~~l~~~~~~~~~~r~~l~~~k~~r~k~~~~~~~l~~~~~----~~~~P~l 143 (177)
T PF13870_consen 79 LTHVKEKLHFLSEELERLKQELKDREEELAKLREELYRVKKERDKLRKQNKKLRQQGG----LLGVPAL 143 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC----CCCCcHH
Confidence 4555556666666677777888888888888888888888888898888888886542 2355655
No 75
>PF05506 DUF756: Domain of unknown function (DUF756); InterPro: IPR008475 This domain is found, normally as a tandem repeat, at the C terminus of bacterial phospholipase C proteins.; GO: 0004629 phospholipase C activity, 0016042 lipid catabolic process
Probab=47.95 E-value=62 Score=25.85 Aligned_cols=44 Identities=18% Similarity=0.237 Sum_probs=30.9
Q ss_pred EEEEEEEcCCCCeEEEEEeeCCCCcEE-EeCCcceeCCCCeEEEEEEe
Q 018377 24 TCVIQLGNKSDQCVAFKVKTTSPKKYC-VRPNVSIIKPKAISDFTVTM 70 (357)
Q Consensus 24 sc~LtLtN~Sd~~VAFKVKTTsPkkY~-VRPn~GvI~P~ss~~V~VTm 70 (357)
.-.|+|.|.....+.|.|.... |. -.|..=.|.||++..+.+-+
T Consensus 21 ~l~l~l~N~g~~~~~~~v~~~~---y~~~~~~~~~v~ag~~~~~~w~l 65 (89)
T PF05506_consen 21 NLRLTLSNPGSAAVTFTVYDNA---YGGGGPWTYTVAAGQTVSLTWPL 65 (89)
T ss_pred EEEEEEEeCCCCcEEEEEEeCC---cCCCCCEEEEECCCCEEEEEEee
Confidence 5689999999999999999721 21 22333345557877777766
No 76
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=47.44 E-value=64 Score=32.26 Aligned_cols=54 Identities=28% Similarity=0.354 Sum_probs=43.9
Q ss_pred hhhHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 018377 268 AKDFEELKLKLNVMDSQLREAEHTIRKLMEARKLATREKDMLKHELEVLRRKSN 321 (357)
Q Consensus 268 ~~d~~~l~~k~~~~~~~~~ea~~~i~kl~ee~~~~~~~~~~L~~El~~lr~~~~ 321 (357)
....++...+|.+.+.++.+.+.-|..|+.+...++++++.|+++++...++-.
T Consensus 227 ~~~l~~~~~~L~~~~~~l~~l~~~l~~l~~~~~~~~~e~~~l~~~~~~~~~kl~ 280 (344)
T PF12777_consen 227 EAELEEAEEQLAEKQAELAELEEKLAALQKEYEEAQKEKQELEEEIEETERKLE 280 (344)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 345566666777888888888889999999999999999999999987666544
No 77
>PF11544 Spc42p: Spindle pole body component Spc42p; InterPro: IPR021611 Spc42p is a 42kDa component of the S.cerevisiae spindle body that localises to the electron dense central region of the SPB. Spc42p is a phosphoprotein which forms a polymeric layer at the periphery of the SPB central plaque. This functions during SPB duplication and also facilitates the attachment of the SPB to the nuclear membrane. ; PDB: 2Q6Q_B.
Probab=46.59 E-value=97 Score=25.40 Aligned_cols=49 Identities=24% Similarity=0.186 Sum_probs=43.3
Q ss_pred HHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 018377 271 FEELKLKLNVMDSQLREAEHTIRKLMEARKLATREKDMLKHELEVLRRK 319 (357)
Q Consensus 271 ~~~l~~k~~~~~~~~~ea~~~i~kl~ee~~~~~~~~~~L~~El~~lr~~ 319 (357)
-.+|+.+|..-+..+..-..+|.-|+..-..-++-+.+|+.+..-+++.
T Consensus 7 Nk~L~~kL~~K~eEI~rLn~lv~sLR~KLiKYt~LnkkLq~~~~~~~~~ 55 (76)
T PF11544_consen 7 NKELKKKLNDKQEEIDRLNILVGSLRGKLIKYTELNKKLQDQLLNLQRS 55 (76)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3468888888888888899999999999999999999999999998874
No 78
>COG4317 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=46.19 E-value=15 Score=30.68 Aligned_cols=16 Identities=38% Similarity=0.723 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHhccc
Q 018377 335 CMVALIGLVVGYLSHP 350 (357)
Q Consensus 335 ~~v~llg~~lGyl~~~ 350 (357)
.+|||+||++||=+-|
T Consensus 32 AlvGllGilvGeq~~p 47 (93)
T COG4317 32 ALVGLLGILVGEQIVP 47 (93)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3899999999996543
No 79
>PF10205 KLRAQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019343 This entry represents a N-terminal 100 residues long domain, which contains a conserved KLRAQ motif. This domain is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain a C-terminal TTKRSYEDQ motif domain (IPR019348 from INTERPRO). The function of these proteins is not known.
Probab=45.82 E-value=1e+02 Score=26.52 Aligned_cols=41 Identities=32% Similarity=0.357 Sum_probs=30.4
Q ss_pred HhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHH
Q 018377 276 LKLNVMDSQLREAEHTIRKLMEARKLATREKDM-------LKHELEVL 316 (357)
Q Consensus 276 ~k~~~~~~~~~ea~~~i~kl~ee~~~~~~~~~~-------L~~El~~l 316 (357)
.|-+.+...|.+-++.|.|+..|..+-.-.|+. ||.||+..
T Consensus 26 ~k~~~L~e~Lk~ke~~LRk~eqE~dSL~FrN~QL~kRV~~LQ~El~~~ 73 (102)
T PF10205_consen 26 AKNAELKEQLKEKEQALRKLEQENDSLTFRNQQLTKRVEVLQEELEES 73 (102)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 456777888888888999999998877666665 46666643
No 80
>COG2991 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=45.47 E-value=17 Score=29.70 Aligned_cols=22 Identities=27% Similarity=0.603 Sum_probs=15.8
Q ss_pred cchhhHHHHH-HHHHHHHHhccc
Q 018377 329 FPLLFVCMVA-LIGLVVGYLSHP 350 (357)
Q Consensus 329 f~l~fv~~v~-llg~~lGyl~~~ 350 (357)
|-|.|++++. ++|+.+||++++
T Consensus 4 ~lltFg~Fllvi~gMsiG~I~kr 26 (77)
T COG2991 4 FLLTFGIFLLVIAGMSIGYIFKR 26 (77)
T ss_pred HHHHHHHHHHHHHHHhHhhheec
Confidence 4566776554 569999999873
No 81
>PF08912 Rho_Binding: Rho Binding; InterPro: IPR015008 Rho is responsible for the recognition and binding of Rho binding domain-containing proteins (such as ROCK) to Rho, resulting in activation of the GTPase which in turn modulates the phosphorylation of various signalling proteins. This domain is within an amphipathic alpha-helical coiled-coil and interacts with Rho through predominantly hydrophobic interactions []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0000910 cytokinesis, 0006468 protein phosphorylation; PDB: 1UIX_A 1S1C_X.
Probab=45.38 E-value=60 Score=26.11 Aligned_cols=47 Identities=21% Similarity=0.343 Sum_probs=32.9
Q ss_pred HhhhHHHHHHhhhhhhhhhHHHHHHHHHHHHHH--HHHHHH--HHHHHHHH
Q 018377 267 LAKDFEELKLKLNVMDSQLREAEHTIRKLMEAR--KLATRE--KDMLKHEL 313 (357)
Q Consensus 267 ~~~d~~~l~~k~~~~~~~~~ea~~~i~kl~ee~--~~~~~~--~~~L~~El 313 (357)
+++|+.+|.....++-.++.++..-+.+++++. -..+.. -..|++|-
T Consensus 1 L~kdv~~l~~EkeeL~~klk~~qeel~~~k~~~~~~~~ik~~~eK~L~~E~ 51 (69)
T PF08912_consen 1 LTKDVANLAKEKEELNNKLKKQQEELQKLKEEEQEIEEIKAQYEKQLNTER 51 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHCHHHHH
T ss_pred CchHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467888888778888888888888888888887 333321 22356664
No 82
>PF11611 DUF4352: Domain of unknown function (DUF4352); InterPro: IPR021652 This entry is represented by Bacteriophage A118, Gp32. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This entry represents a group of putative lipoproteins of unknown function.; PDB: 3CFU_A.
Probab=45.27 E-value=92 Score=25.29 Aligned_cols=55 Identities=18% Similarity=0.166 Sum_probs=34.4
Q ss_pred CCceeEEEEEEEcCCCCeEE-----EEEeeCCCCcEEEeC---------CcceeCCCCeEEEEEEeccC
Q 018377 19 VKKQSTCVIQLGNKSDQCVA-----FKVKTTSPKKYCVRP---------NVSIIKPKAISDFTVTMQAQ 73 (357)
Q Consensus 19 ~~kq~sc~LtLtN~Sd~~VA-----FKVKTTsPkkY~VRP---------n~GvI~P~ss~~V~VTmqa~ 73 (357)
.++-..-.++++|++++++. |++.+.+-..|.... ..+-|.||+++...+.+...
T Consensus 34 g~~fv~v~v~v~N~~~~~~~~~~~~f~l~d~~g~~~~~~~~~~~~~~~~~~~~i~pG~~~~g~l~F~vp 102 (123)
T PF11611_consen 34 GNKFVVVDVTVKNNGDEPLDFSPSDFKLYDSDGNKYDPDFSASSNDNDLFSETIKPGESVTGKLVFEVP 102 (123)
T ss_dssp -SEEEEEEEEEEE-SSS-EEEEGGGEEEE-TT--B--EEE-CCCTTTB--EEEE-TT-EEEEEEEEEES
T ss_pred CCEEEEEEEEEEECCCCcEEecccceEEEeCCCCEEcccccchhccccccccEECCCCEEEEEEEEEEC
Confidence 34556678999999998776 788877777777554 34789999999999988754
No 83
>smart00340 HALZ homeobox associated leucin zipper.
Probab=44.19 E-value=42 Score=24.78 Aligned_cols=19 Identities=32% Similarity=0.340 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHHHHHhh
Q 018377 301 LATREKDMLKHELEVLRRK 319 (357)
Q Consensus 301 ~~~~~~~~L~~El~~lr~~ 319 (357)
+-+.||+.||+|+..||.-
T Consensus 16 ~LteeNrRL~ke~~eLral 34 (44)
T smart00340 16 SLTEENRRLQKEVQELRAL 34 (44)
T ss_pred HHHHHHHHHHHHHHHHHhc
Confidence 4456788999999999964
No 84
>PF11027 DUF2615: Protein of unknown function (DUF2615); InterPro: IPR020309 This entry represents a group of uncharacterised protein from the Metazoa, including CD034 (or C4orf34) and YQF4 (or C34C12.4).
Probab=43.83 E-value=25 Score=30.23 Aligned_cols=27 Identities=19% Similarity=0.343 Sum_probs=23.3
Q ss_pred cCCcchhhHHHHHHHHHHHHHhcccCC
Q 018377 326 QVGFPLLFVCMVALIGLVVGYLSHPQN 352 (357)
Q Consensus 326 ~~gf~l~fv~~v~llg~~lGyl~~~~~ 352 (357)
.+|.+.+|+.++.++=.++-|+++|..
T Consensus 50 ~~~~~~~~~~~~w~~~A~~ly~~RP~s 76 (103)
T PF11027_consen 50 DGGNSMFMMMMLWMVLAMALYLLRPSS 76 (103)
T ss_pred CCCccHHHHHHHHHHHHHHHHHcCchh
Confidence 367889999999999999999999864
No 85
>KOG0972 consensus Huntingtin interacting protein 1 (Hip1) interactor Hippi [Signal transduction mechanisms]
Probab=43.18 E-value=82 Score=32.10 Aligned_cols=58 Identities=21% Similarity=0.266 Sum_probs=34.0
Q ss_pred hHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccCCcchh
Q 018377 270 DFEELKLKLNVMDSQLREAEHTIRKLMEARKLATREKDMLKHELEVLRRKSNLRRVQVGFPLL 332 (357)
Q Consensus 270 d~~~l~~k~~~~~~~~~ea~~~i~kl~ee~~~~~~~~~~L~~El~~lr~~~~~~~~~~gf~l~ 332 (357)
-|.++...|+++..+...|..-+++-|++-+.-..+..+++|||+. ++.+. ..|-||.
T Consensus 281 ~fr~a~~~lse~~e~y~q~~~gv~~rT~~L~eVm~e~E~~KqemEe---~G~~m--sDGaplv 338 (384)
T KOG0972|consen 281 KFRRATDTLSELREKYKQASVGVSSRTETLDEVMDEIEQLKQEMEE---QGAKM--SDGAPLV 338 (384)
T ss_pred HHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHH---hcccc--cCCchHH
Confidence 3334444445555555555545555555666666778888888874 44442 4688875
No 86
>PF15188 CCDC-167: Coiled-coil domain-containing protein 167
Probab=42.82 E-value=94 Score=25.86 Aligned_cols=50 Identities=18% Similarity=0.237 Sum_probs=29.4
Q ss_pred hhHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 018377 269 KDFEELKLKLNVMDSQLREAEHTIRKLMEARKLATREKDMLKHELEVLRRKSNL 322 (357)
Q Consensus 269 ~d~~~l~~k~~~~~~~~~ea~~~i~kl~ee~~~~~~~~~~L~~El~~lr~~~~~ 322 (357)
+|++.+.++|... .-+.|++.- |.+|.++-...-....+||..||++..+
T Consensus 19 ~~le~ve~rL~~~-eLs~e~R~~---lE~E~~~l~~~l~~~E~eL~~LrkENrK 68 (85)
T PF15188_consen 19 RRLEAVESRLRRR-ELSPEARRS---LEKELNELKEKLENNEKELKLLRKENRK 68 (85)
T ss_pred HHHHHHHHHHccc-CCChHHHHH---HHHHHHHHHHHhhccHHHHHHHHHhhhh
Confidence 4555444444322 223344432 3366666667778888999999986544
No 87
>PF11621 Sbi-IV: C3 binding domain 4 of IgG-bind protein SBI; InterPro: IPR021657 This family of proteins represents Sbi domain IV which binds the central complement protein C3. Sbi-IV interacts with Sbi-III to induce a consumption of complement via alternative pathway activation []. When not interacting with Sbi-III, Sbi-IV inhibits the alternative pathway without complement consumption. The structure of Sbi-IV consists of a three-helix bundle fold []. ; PDB: 2JVG_A 2JVH_A 2WY7_Q 2WY8_Q.
Probab=42.42 E-value=36 Score=26.88 Aligned_cols=37 Identities=27% Similarity=0.469 Sum_probs=26.2
Q ss_pred hhhhHHHHHHHHHHHHH-----HHHHHHHH--------HHHHHHHHHHHh
Q 018377 282 DSQLREAEHTIRKLMEA-----RKLATREK--------DMLKHELEVLRR 318 (357)
Q Consensus 282 ~~~~~ea~~~i~kl~ee-----~~~~~~~~--------~~L~~El~~lr~ 318 (357)
++.+-+|...|++|.|| ||.|-++- +-||.||+.|-.
T Consensus 11 der~~~AN~Ai~~L~~~DSI~NRR~AQR~VNK~~~D~~~~~QK~LD~i~A 60 (69)
T PF11621_consen 11 DERVMSANDAISKLQQKDSIQNRRAAQREVNKAPMDSKNHFQKQLDQINA 60 (69)
T ss_dssp HHHHHHHHHHHHHHHHS--HHHHHHHHHHHCTS-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhcccHHHHHHHHHHHhcCChhHHHHHHHHHHHHhc
Confidence 45677888999999875 55665554 447888887643
No 88
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=42.22 E-value=1.9e+02 Score=30.94 Aligned_cols=88 Identities=14% Similarity=0.184 Sum_probs=70.3
Q ss_pred HHHHhhhHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccCCcchhhHHHHHHHHHH
Q 018377 264 ELKLAKDFEELKLKLNVMDSQLREAEHTIRKLMEARKLATREKDMLKHELEVLRRKSNLRRVQVGFPLLFVCMVALIGLV 343 (357)
Q Consensus 264 ~~~~~~d~~~l~~k~~~~~~~~~ea~~~i~kl~ee~~~~~~~~~~L~~El~~lr~~~~~~~~~~gf~l~fv~~v~llg~~ 343 (357)
...+.+.++++..++..++....+-...|..|+.+-..|.+..++++..|..++|...++ .-.|.|=-|.-+..-+.--
T Consensus 378 ysel~e~leel~e~leeie~eq~ei~e~l~~Lrk~E~eAr~kL~~~~~~L~~ikr~l~k~-~lpgip~~y~~~~~~~~~~ 456 (569)
T PRK04778 378 YSELQEELEEILKQLEEIEKEQEKLSEMLQGLRKDELEAREKLERYRNKLHEIKRYLEKS-NLPGLPEDYLEMFFEVSDE 456 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CCCCCcHHHHHHHHHHHHH
Confidence 345667777888888888888888999999999999999999999999999999877665 4579999998888776666
Q ss_pred HHHhcccCC
Q 018377 344 VGYLSHPQN 352 (357)
Q Consensus 344 lGyl~~~~~ 352 (357)
+.-+.+.++
T Consensus 457 i~~l~~~L~ 465 (569)
T PRK04778 457 IEALAEELE 465 (569)
T ss_pred HHHHHHHhc
Confidence 555554433
No 89
>PRK13673 hypothetical protein; Provisional
Probab=41.35 E-value=34 Score=30.02 Aligned_cols=36 Identities=19% Similarity=0.455 Sum_probs=23.8
Q ss_pred HHHHHHHhhhccccccCCcchhhHHHHHHHHHHHHHhcc
Q 018377 311 HELEVLRRKSNLRRVQVGFPLLFVCMVALIGLVVGYLSH 349 (357)
Q Consensus 311 ~El~~lr~~~~~~~~~~gf~l~fv~~v~llg~~lGyl~~ 349 (357)
=||.+.|+|..+ +.+|+-..|++.+ ++-+.+||.|-
T Consensus 77 mEm~l~r~kk~k--~~~~~~~~~ii~l-vlti~lG~~Lp 112 (118)
T PRK13673 77 MEMSLAKRKKGK--PTGGFWWIFIIVL-VLTILLGLILP 112 (118)
T ss_pred HHHHHHHHHcCC--CcccHHHHHHHHH-HHHHHHHHHhc
Confidence 388888987654 3577766666643 45557787653
No 90
>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA. They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.
Probab=39.63 E-value=60 Score=32.55 Aligned_cols=43 Identities=26% Similarity=0.326 Sum_probs=21.4
Q ss_pred HHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018377 272 EELKLKLNVMDSQLREAEHTIRKLMEARKLATREKDMLKHELE 314 (357)
Q Consensus 272 ~~l~~k~~~~~~~~~ea~~~i~kl~ee~~~~~~~~~~L~~El~ 314 (357)
.+||..|.++++|...|--.-..|--||.+-..|.+.|+.+|+
T Consensus 80 r~lk~~l~evEekyrkAMv~naQLDNek~~l~yqvd~Lkd~le 122 (302)
T PF09738_consen 80 RDLKDSLAEVEEKYRKAMVSNAQLDNEKSALMYQVDLLKDKLE 122 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHH
Confidence 3444455555555555544445555555555555444444433
No 91
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=39.34 E-value=78 Score=24.06 Aligned_cols=27 Identities=30% Similarity=0.399 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018377 290 HTIRKLMEARKLATREKDMLKHELEVL 316 (357)
Q Consensus 290 ~~i~kl~ee~~~~~~~~~~L~~El~~l 316 (357)
.-|..|+.+-....+++++|++|++.|
T Consensus 24 ~ei~~l~~~i~~l~~e~~~L~~ei~~l 50 (80)
T PF04977_consen 24 QEIAELQKEIEELKKENEELKEEIERL 50 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344455555555555666666666665
No 92
>COG4575 ElaB Uncharacterized conserved protein [Function unknown]
Probab=38.66 E-value=1.8e+02 Score=25.11 Aligned_cols=21 Identities=33% Similarity=0.428 Sum_probs=18.2
Q ss_pred cchhhHHHHHHHHHHHHHhcc
Q 018377 329 FPLLFVCMVALIGLVVGYLSH 349 (357)
Q Consensus 329 f~l~fv~~v~llg~~lGyl~~ 349 (357)
=|+-=|-+-|-+|++||.||-
T Consensus 82 ~PWq~VGvaAaVGlllGlLls 102 (104)
T COG4575 82 NPWQGVGVAAAVGLLLGLLLS 102 (104)
T ss_pred CCchHHHHHHHHHHHHHHHHh
Confidence 577788888999999999985
No 93
>PF13870 DUF4201: Domain of unknown function (DUF4201)
Probab=38.52 E-value=75 Score=28.56 Aligned_cols=39 Identities=18% Similarity=0.324 Sum_probs=14.5
Q ss_pred HHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018377 272 EELKLKLNVMDSQLREAEHTIRKLMEARKLATREKDMLK 310 (357)
Q Consensus 272 ~~l~~k~~~~~~~~~ea~~~i~kl~ee~~~~~~~~~~L~ 310 (357)
+.++..+...+..+...+.-+.+++.++.....++.+|+
T Consensus 94 ~~l~~~l~~~~~~~~~~r~~l~~~k~~r~k~~~~~~~l~ 132 (177)
T PF13870_consen 94 ERLKQELKDREEELAKLREELYRVKKERDKLRKQNKKLR 132 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333333333333333333333
No 94
>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure. It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.
Probab=38.47 E-value=1.4e+02 Score=23.34 Aligned_cols=35 Identities=40% Similarity=0.484 Sum_probs=18.4
Q ss_pred hhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 018377 277 KLNVMDSQLREAEHTIRKLMEARKLATREKDMLKHELEVLRR 318 (357)
Q Consensus 277 k~~~~~~~~~ea~~~i~kl~ee~~~~~~~~~~L~~El~~lr~ 318 (357)
..-..+.+|.||+.-..-|. ++.+.|+.||+-+|.
T Consensus 26 ~n~~~e~kLqeaE~rn~eL~-------~ei~~L~~e~ee~r~ 60 (61)
T PF08826_consen 26 ANLAFESKLQEAEKRNRELE-------QEIERLKKEMEELRS 60 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHhhc
Confidence 33455556666654443333 445566666666663
No 95
>PLN03188 kinesin-12 family protein; Provisional
Probab=37.78 E-value=83 Score=37.43 Aligned_cols=33 Identities=27% Similarity=0.302 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHhhh
Q 018377 288 AEHTIRKLMEAR----------KLATREKDMLKHELEVLRRKS 320 (357)
Q Consensus 288 a~~~i~kl~ee~----------~~~~~~~~~L~~El~~lr~~~ 320 (357)
|..++.+|+|.- ..+-||+.||.++|+.|+||-
T Consensus 1199 agellvrl~eaeea~~~a~~r~~~~eqe~~~~~k~~~klkrkh 1241 (1320)
T PLN03188 1199 AGELLVRLKEAEEALTVAQKRAMDAEQEAAEAYKQIDKLKRKH 1241 (1320)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344666666532 346789999999999999886
No 96
>PF02183 HALZ: Homeobox associated leucine zipper; InterPro: IPR003106 This region is a plant specific leucine zipper that is always found associated with a homeobox []. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=37.47 E-value=1.5e+02 Score=21.70 Aligned_cols=30 Identities=20% Similarity=0.295 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 018377 291 TIRKLMEARKLATREKDMLKHELEVLRRKS 320 (357)
Q Consensus 291 ~i~kl~ee~~~~~~~~~~L~~El~~lr~~~ 320 (357)
--..|+.+.++-.+|++.|+.|+..|+.+.
T Consensus 13 ~yd~Lk~~~~~L~~E~~~L~aev~~L~~kl 42 (45)
T PF02183_consen 13 SYDSLKAEYDSLKKENEKLRAEVQELKEKL 42 (45)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 445678888888899999999999988654
No 97
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=36.43 E-value=1.9e+02 Score=25.28 Aligned_cols=54 Identities=30% Similarity=0.358 Sum_probs=35.1
Q ss_pred HHHhhhHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 018377 265 LKLAKDFEELKLKLNVMDSQLREAEHTIRKLMEARKLATREKDMLKHELEVLRR 318 (357)
Q Consensus 265 ~~~~~d~~~l~~k~~~~~~~~~ea~~~i~kl~ee~~~~~~~~~~L~~El~~lr~ 318 (357)
.++..+++.|+.++..++.++.-+..-...|..+-+++......++.|+.-++.
T Consensus 69 ~~l~~~~~rL~~~~~~~ere~~~~~~~~~~l~~~~~~~~~~~k~~kee~~klk~ 122 (151)
T PF11559_consen 69 ERLQNDVERLKEQLEELERELASAEEKERQLQKQLKSLEAKLKQEKEELQKLKN 122 (151)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455566666666666666666666666666666666666666666666665553
No 98
>COG4467 Regulator of replication initiation timing [Replication, recombination, and repair]
Probab=36.43 E-value=1.4e+02 Score=26.16 Aligned_cols=42 Identities=21% Similarity=0.218 Sum_probs=23.9
Q ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 018377 278 LNVMDSQLREAEHTIRKLMEARKLATREKDMLKHELEVLRRK 319 (357)
Q Consensus 278 ~~~~~~~~~ea~~~i~kl~ee~~~~~~~~~~L~~El~~lr~~ 319 (357)
+.+++.++-+..+-|.-|+.---+-+.||.-||=|.+-||++
T Consensus 10 v~~le~~l~~l~~el~~lK~~l~~lvEEN~~L~lENe~LR~R 51 (114)
T COG4467 10 VDNLEEQLGVLLAELGGLKQHLGSLVEENTALRLENEKLRER 51 (114)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhHHHHHHH
Confidence 344555555555555555555555566666666666666654
No 99
>PF04744 Monooxygenase_B: Monooxygenase subunit B protein; InterPro: IPR006833 Ammonia monooxygenase and the particulate methane monooxygenase are both integral membrane proteins, occurring in ammonia oxidisers and methanotrophs respectively, which are thought to be evolutionarily related []. These enzymes have a relatively wide substrate specificity and can catalyse the oxidation of a range of substrates including ammonia, methane, halogenated hydrocarbons and aromatic molecules []. These enzymes are composed of 3 subunits - A (IPR003393 from INTERPRO), B (IPR006833 from INTERPRO) and C (IPR006980 from INTERPRO) - and contain various metal centres, including copper. Particulate methane monooxygenase from Methylococcus capsulatus str. Bath is an ABC homotrimer, which contains mononuclear and dinuclear copper metal centres, and a third metal centre containing a metal ion whose identity in vivo is not certain[]. The soluble regions of these enzymes derive primarily from the B subunit. This subunit forms two antiparallel beta-barrel-like structures and contains the mono- and di- nuclear copper metal centres [].; PDB: 3CHX_E 3RFR_A 3RGB_A 1YEW_A.
Probab=36.21 E-value=1.9e+02 Score=30.19 Aligned_cols=65 Identities=20% Similarity=0.278 Sum_probs=39.8
Q ss_pred eEEeCCeeEEeccCCceeEEEEEEEcCCCCeEEEEEeeCCCCcE----------------------EEeCCcceeCCCCe
Q 018377 6 LDIQPLELKFTFEVKKQSTCVIQLGNKSDQCVAFKVKTTSPKKY----------------------CVRPNVSIIKPKAI 63 (357)
Q Consensus 6 L~I~P~EL~F~~e~~kq~sc~LtLtN~Sd~~VAFKVKTTsPkkY----------------------~VRPn~GvI~P~ss 63 (357)
+.++-..-.|.-+ ++...-+|+++|+++++|-..==+|+.-+| .|.|+ +=|.||++
T Consensus 249 V~~~v~~A~Y~vp-gR~l~~~l~VtN~g~~pv~LgeF~tA~vrFln~~v~~~~~~~P~~l~A~~gL~vs~~-~pI~PGET 326 (381)
T PF04744_consen 249 VKVKVTDATYRVP-GRTLTMTLTVTNNGDSPVRLGEFNTANVRFLNPDVPTDDPDYPDELLAERGLSVSDN-SPIAPGET 326 (381)
T ss_dssp EEEEEEEEEEESS-SSEEEEEEEEEEESSS-BEEEEEESSS-EEE-TTT-SS-S---TTTEETT-EEES---S-B-TT-E
T ss_pred eEEEEeccEEecC-CcEEEEEEEEEcCCCCceEeeeEEeccEEEeCcccccCCCCCchhhhccCcceeCCC-CCcCCCce
Confidence 3444444555544 578899999999999999887444433332 23333 46899999
Q ss_pred EEEEEEecc
Q 018377 64 SDFTVTMQA 72 (357)
Q Consensus 64 ~~V~VTmqa 72 (357)
.+|.|+.|.
T Consensus 327 rtl~V~a~d 335 (381)
T PF04744_consen 327 RTLTVEAQD 335 (381)
T ss_dssp EEEEEEEE-
T ss_pred EEEEEEeeh
Confidence 999999874
No 100
>KOG3156 consensus Uncharacterized membrane protein [Function unknown]
Probab=35.98 E-value=76 Score=30.68 Aligned_cols=40 Identities=18% Similarity=0.269 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHhhhccccccCCcchhhHHHHHHHHHHHHHh
Q 018377 307 DMLKHELEVLRRKSNLRRVQVGFPLLFVCMVALIGLVVGYL 347 (357)
Q Consensus 307 ~~L~~El~~lr~~~~~~~~~~gf~l~fv~~v~llg~~lGyl 347 (357)
.|+-+|+.-||.....-. -.-.-++|-+++|..+++|||+
T Consensus 177 ~kId~Ev~~lk~qi~s~K-~qt~qw~~g~v~~~~Al~La~~ 216 (220)
T KOG3156|consen 177 TKIDQEVTNLKTQIESVK-TQTIQWLIGVVTGTSALVLAYL 216 (220)
T ss_pred HHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHH
Confidence 688899999998876531 2457788999999999999997
No 101
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=35.64 E-value=2.6e+02 Score=30.07 Aligned_cols=88 Identities=18% Similarity=0.255 Sum_probs=70.8
Q ss_pred HHHHhhhHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccCCcchhhHHHHHHHHHH
Q 018377 264 ELKLAKDFEELKLKLNVMDSQLREAEHTIRKLMEARKLATREKDMLKHELEVLRRKSNLRRVQVGFPLLFVCMVALIGLV 343 (357)
Q Consensus 264 ~~~~~~d~~~l~~k~~~~~~~~~ea~~~i~kl~ee~~~~~~~~~~L~~El~~lr~~~~~~~~~~gf~l~fv~~v~llg~~ 343 (357)
.+.+...++++...+...+.+..+-...+..|+.+=..|-++.++++++|-.++|+..++ .=.|.|=-|.-+.....--
T Consensus 374 yS~i~~~l~~~~~~l~~ie~~q~~~~~~l~~L~~dE~~Ar~~l~~~~~~l~~ikR~lek~-nLPGlp~~y~~~~~~~~~~ 452 (560)
T PF06160_consen 374 YSEIQEELEEIEEQLEEIEEEQEEINESLQSLRKDEKEAREKLQKLKQKLREIKRRLEKS-NLPGLPEDYLDYFFDVSDE 452 (560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHH
Confidence 345566677777778888888888899999999999999999999999999999998776 4479998888877777666
Q ss_pred HHHhcccCC
Q 018377 344 VGYLSHPQN 352 (357)
Q Consensus 344 lGyl~~~~~ 352 (357)
+.-+..-.|
T Consensus 453 i~~l~~~L~ 461 (560)
T PF06160_consen 453 IEELSDELN 461 (560)
T ss_pred HHHHHHHHh
Confidence 666554433
No 102
>PF08606 Prp19: Prp19/Pso4-like; InterPro: IPR013915 This region is found specifically in PRP19-like protein. The region represented by this protein covers the sequence implicated in self-interaction and a coiled-coiled motif []. PRP19-like proteins form an oligomer that is necessary for spliceosome assembly [].
Probab=35.53 E-value=95 Score=25.06 Aligned_cols=25 Identities=24% Similarity=0.267 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 018377 286 REAEHTIRKLMEARKLATREKDMLK 310 (357)
Q Consensus 286 ~ea~~~i~kl~ee~~~~~~~~~~L~ 310 (357)
.-|..+|.||..||+.+.++..+||
T Consensus 46 DAA~RViArl~kErd~ar~~l~~l~ 70 (70)
T PF08606_consen 46 DAACRVIARLLKERDEAREALAELQ 70 (70)
T ss_pred hHHHHHHHHHHHhHHHHHHHHHhcC
Confidence 3467799999988888777666553
No 103
>PF02687 FtsX: FtsX-like permease family; InterPro: IPR003838 This domain is found in predicted permeases and hypothetical transmembrane proteins. P57382 from SWISSPROT has been shown to transport lipids targeted to the outer membrane across the inner membrane. Both P57382 and O54500 from SWISSPROT have been shown to require ATP. This domain contains three transmembrane helices.; GO: 0016020 membrane
Probab=35.44 E-value=56 Score=25.72 Aligned_cols=40 Identities=28% Similarity=0.422 Sum_probs=23.5
Q ss_pred HHHHHHHHHHhhhccccccCCcchhhHHHHHHHHHHHHHh
Q 018377 308 MLKHELEVLRRKSNLRRVQVGFPLLFVCMVALIGLVVGYL 347 (357)
Q Consensus 308 ~L~~El~~lr~~~~~~~~~~gf~l~fv~~v~llg~~lGyl 347 (357)
+=++|+..||.-|.+++.=...-+.-.++++++|+++|++
T Consensus 25 ~~~~~~~il~~lG~s~~~i~~~~~~e~~~~~~~~~~~g~~ 64 (121)
T PF02687_consen 25 ERRREIAILRALGASKRQIRKMFLYEALLIALIGILIGIL 64 (121)
T ss_pred HHHHHHHHHHHcCCChhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 4467899999887776321233334445556666665543
No 104
>PF11221 Med21: Subunit 21 of Mediator complex; InterPro: IPR021384 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. Med21 has been known as Srb7 in yeasts, hSrb7 in humans and Trap 19 in Drosophila. The heterodimer of the two subunits Med7 and Med21 appears to act as a hinge between the middle and the tail regions of Mediator []. ; PDB: 1YKE_B 1YKH_B.
Probab=34.52 E-value=1.8e+02 Score=25.71 Aligned_cols=54 Identities=26% Similarity=0.205 Sum_probs=40.0
Q ss_pred HHhhhHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 018377 266 KLAKDFEELKLKLNVMDSQLREAEHTIRKLMEARKLATREKDMLKHELEVLRRK 319 (357)
Q Consensus 266 ~~~~d~~~l~~k~~~~~~~~~ea~~~i~kl~ee~~~~~~~~~~L~~El~~lr~~ 319 (357)
.-+|+++.|=+.|-+.+.--++=.+.|.+|.+|.+.+-+|+.+.-.|.+.|.++
T Consensus 80 ~kakqIe~LIdsLPg~~~see~Q~~~i~~L~~E~~~~~~el~~~v~e~e~ll~~ 133 (144)
T PF11221_consen 80 RKAKQIEYLIDSLPGIEVSEEEQLKRIKELEEENEEAEEELQEAVKEAEELLKQ 133 (144)
T ss_dssp HHHHHHHHHHHHSTTSSS-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345788888888877776555557789999888888888887777777766654
No 105
>TIGR02745 ccoG_rdxA_fixG cytochrome c oxidase accessory protein FixG. Member of this ferredoxin-like protein family are found exclusively in species with an operon encoding the cbb3 type of cytochrome c oxidase (cco-cbb3), and near the cco-cbb3 operon in about half the cases. The cco-cbb3 is found in a variety of proteobacteria and almost nowhere else, and is associated with oxygen use under microaerobic conditions. Some (but not all) of these proteobacteria are also nitrogen-fixing, hence the gene symbol fixG. FixG was shown essential for functional cco-cbb3 expression in Bradyrhizobium japonicum.
Probab=33.90 E-value=2.3e+02 Score=29.81 Aligned_cols=68 Identities=13% Similarity=0.119 Sum_probs=44.5
Q ss_pred eeEEEEEEEcCCCCeEEEEEeeCCCCcEEEe-C-CcceeCCCCeEEEEEEeccCCCCCCCCCCCceEEEEEE
Q 018377 22 QSTCVIQLGNKSDQCVAFKVKTTSPKKYCVR-P-NVSIIKPKAISDFTVTMQAQRVAPPDLQCKDKFLIQGI 91 (357)
Q Consensus 22 q~sc~LtLtN~Sd~~VAFKVKTTsPkkY~VR-P-n~GvI~P~ss~~V~VTmqa~~e~P~d~q~kDKFLVQSv 91 (357)
+...+++|.|++.++..|.++........+. + +.=.|+||+..++.|++........ ..++.|.+...
T Consensus 347 ~N~Y~~~i~Nk~~~~~~~~l~v~g~~~~~~~~~~~~i~v~~g~~~~~~v~v~~~~~~~~--~~~~~i~~~v~ 416 (434)
T TIGR02745 347 ENTYTLKILNKTEQPHEYYLSVLGLPGIKIEGPGAPIHVKAGEKVKLPVFLRTPPDALK--SGITSIEIRAY 416 (434)
T ss_pred EEEEEEEEEECCCCCEEEEEEEecCCCcEEEcCCceEEECCCCEEEEEEEEEechhhcc--CCceeEEEEEE
Confidence 4577999999999988888877654333332 2 3458999999988888766533221 23455554433
No 106
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=33.42 E-value=97 Score=34.51 Aligned_cols=57 Identities=23% Similarity=0.266 Sum_probs=48.7
Q ss_pred HHHHhhhHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 018377 264 ELKLAKDFEELKLKLNVMDSQLREAEHTIRKLMEARKLATREKDMLKHELEVLRRKS 320 (357)
Q Consensus 264 ~~~~~~d~~~l~~k~~~~~~~~~ea~~~i~kl~ee~~~~~~~~~~L~~El~~lr~~~ 320 (357)
...+-.|+..||+.|..+...=.|.+..|+.|+...+..-.+.+.||+|.|.|..|.
T Consensus 420 ~~rLE~dvkkLraeLq~~Rq~E~ELRsqis~l~~~Er~lk~eL~qlr~ene~Lq~Kl 476 (697)
T PF09726_consen 420 ISRLEADVKKLRAELQSSRQSEQELRSQISSLTNNERSLKSELSQLRQENEQLQNKL 476 (697)
T ss_pred HHHHHHHHHHHHHHHHhhhhhHHHHHHHHhhccccchHHHHHHHHHHHHHHHHHHHH
Confidence 456778999999999888888888999999999877788889999999999888654
No 107
>PF03173 CHB_HEX: Putative carbohydrate binding domain; InterPro: IPR004866 This domain represents the N-terminal domain in chitobiases and beta-hexosaminidases 3.2.1.52 from EC. Chitobiases degrade chitin, which forms the exoskeleton in insects and crustaceans, and which is one of the most abundant polysaccharides on earth []. Beta-hexosaminidases are composed of either a HexA/HexB heterodimer or a HexB homodimer, and can hydrolyse diverse substrates, including GM(2)-gangliosides; mutations in this enzyme are associated with Tay-Sachs disease []. HexB is structurally similar to chitobiase, consisting of a beta sandwich structure; this structure is similar to that found in the cellulose-binding domain of cellulase from Cellulomonas fimi (IPR001919 from INTERPRO), suggesting that it may function as a carbohydrate-binding domain.; GO: 0030246 carbohydrate binding; PDB: 1C7T_A 1QBA_A 1QBB_A 1C7S_A.
Probab=32.98 E-value=50 Score=30.18 Aligned_cols=34 Identities=12% Similarity=0.211 Sum_probs=26.0
Q ss_pred EEEeeCCCCcEEEeCCcce--eCCCCeEEEEEEecc
Q 018377 39 FKVKTTSPKKYCVRPNVSI--IKPKAISDFTVTMQA 72 (357)
Q Consensus 39 FKVKTTsPkkY~VRPn~Gv--I~P~ss~~V~VTmqa 72 (357)
|+|.--+-+.|++.|.-|+ |.||+++.|.+.-+.
T Consensus 69 f~i~hinGDl~kl~Pt~~F~gl~~Ges~~I~~~~~~ 104 (164)
T PF03173_consen 69 FKITHINGDLHKLTPTAGFKGLAPGESLEIPFVGEY 104 (164)
T ss_dssp EEEEE-STTEEEEEE-TT---B-TTEEEEEEEEEES
T ss_pred eEEEEEcCeEEEEeECCCCCccCCCCEEEEEEEccc
Confidence 7788888899999999998 899999999988554
No 108
>PF02960 K1: K1 glycoprotein; InterPro: IPR004121 Current genotyping systems for Human herpesvirus 8 (HHV-8) are based on the highly variable gene encoding the K1 glycoprotein []. This entry represents the C-terminal region of the K1 glycoprotein.
Probab=32.98 E-value=35 Score=30.05 Aligned_cols=17 Identities=53% Similarity=0.927 Sum_probs=14.4
Q ss_pred hhhHHHHHHHHHHHHHh
Q 018377 331 LLFVCMVALIGLVVGYL 347 (357)
Q Consensus 331 l~fv~~v~llg~~lGyl 347 (357)
|+|.-+|||||.+.|.|
T Consensus 71 LvfmTlVaLIgTMCgIL 87 (130)
T PF02960_consen 71 LVFMTLVALIGTMCGIL 87 (130)
T ss_pred eHHHHHHHHHHHHHHHH
Confidence 67888999999988765
No 109
>PF04728 LPP: Lipoprotein leucine-zipper; InterPro: IPR006817 This repeating sequence, NAKVDQLSNDV, is found in the enterobacterial outer membrane lipoprotein LPP. The outer membrane lipoprotein is the most abundant protein in an Escherichia coli cell. The messenger RNA for the lipoprotein of the E. coli outer membrane codes for a putative precursor, prolipoprotein, which has 20 additional amino acid residues extending from the amino terminus of the lipoprotein.; GO: 0019867 outer membrane; PDB: 1JCC_A 2GUV_C 2GUS_A 1JCD_A 1KFM_A 1T8Z_D 1KFN_A 1EQ7_A.
Probab=32.84 E-value=2e+02 Score=22.31 Aligned_cols=41 Identities=17% Similarity=0.230 Sum_probs=30.1
Q ss_pred HHHHhhhHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHH
Q 018377 264 ELKLAKDFEELKLKLNVMDSQLREAEHTIRKLMEARKLATR 304 (357)
Q Consensus 264 ~~~~~~d~~~l~~k~~~~~~~~~ea~~~i~kl~ee~~~~~~ 304 (357)
..++..|++.|++|...+.....-..+-|...++|-..|-+
T Consensus 5 id~Ls~dVq~L~~kvdqLs~dv~~lr~~v~~ak~EAaRAN~ 45 (56)
T PF04728_consen 5 IDQLSSDVQTLNSKVDQLSSDVNALRADVQAAKEEAARANQ 45 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35678899999999888888777777777766666544433
No 110
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []. Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.
Probab=32.56 E-value=1e+02 Score=29.66 Aligned_cols=42 Identities=33% Similarity=0.446 Sum_probs=35.5
Q ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 018377 278 LNVMDSQLREAEHTIRKLMEARKLATREKDMLKHELEVLRRK 319 (357)
Q Consensus 278 ~~~~~~~~~ea~~~i~kl~ee~~~~~~~~~~L~~El~~lr~~ 319 (357)
...|+.++.++...|.+|.+++...-.+...||+++...|..
T Consensus 77 k~~Le~e~~e~~~~i~~l~ee~~~ke~Ea~~lq~el~~ar~~ 118 (246)
T PF00769_consen 77 KEQLEQELREAEAEIARLEEESERKEEEAEELQEELEEARED 118 (246)
T ss_dssp ----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356888999999999999999999999999999999988764
No 111
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=32.25 E-value=1.2e+02 Score=30.91 Aligned_cols=46 Identities=30% Similarity=0.419 Sum_probs=34.1
Q ss_pred HHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 018377 273 ELKLKLNVMDSQLREAEHTIRKLMEARKLATREKDMLKHELEVLRR 318 (357)
Q Consensus 273 ~l~~k~~~~~~~~~ea~~~i~kl~ee~~~~~~~~~~L~~El~~lr~ 318 (357)
+|..++.+++.+....++.+..|.++.+...++..+|++|++.|+.
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 50 (389)
T PRK03992 5 ALEERNSELEEQIRQLELKLRDLEAENEKLERELERLKSELEKLKS 50 (389)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 3444555666677777777888888888888888888888887774
No 112
>PF06305 DUF1049: Protein of unknown function (DUF1049); InterPro: IPR010445 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=32.23 E-value=41 Score=25.26 Aligned_cols=21 Identities=29% Similarity=0.656 Sum_probs=14.2
Q ss_pred cchhh-HHHHHHHHHHHHHhcc
Q 018377 329 FPLLF-VCMVALIGLVVGYLSH 349 (357)
Q Consensus 329 f~l~f-v~~v~llg~~lGyl~~ 349 (357)
.|+.. +++..++|+++|+++-
T Consensus 18 ~pl~l~il~~f~~G~llg~l~~ 39 (68)
T PF06305_consen 18 LPLGLLILIAFLLGALLGWLLS 39 (68)
T ss_pred chHHHHHHHHHHHHHHHHHHHH
Confidence 45544 4555678999999864
No 113
>PF06667 PspB: Phage shock protein B; InterPro: IPR009554 This family consists of several bacterial phage shock protein B (PspB) sequences. The phage shock protein (psp) operon is induced in response to heat, ethanol, osmotic shock and infection by filamentous bacteriophages []. Expression of the operon requires the alternative sigma factor sigma54 and the transcriptional activator PspF. In addition, PspA plays a negative regulatory role, and the integral-membrane proteins PspB and PspC play a positive one [].; GO: 0006355 regulation of transcription, DNA-dependent, 0009271 phage shock
Probab=32.03 E-value=51 Score=26.75 Aligned_cols=20 Identities=35% Similarity=0.447 Sum_probs=17.6
Q ss_pred hhHHHHHHHHHHHHHhcccC
Q 018377 332 LFVCMVALIGLVVGYLSHPQ 351 (357)
Q Consensus 332 ~fv~~v~llg~~lGyl~~~~ 351 (357)
+|+++||.+.+++-|.-|..
T Consensus 12 vf~ifVap~WL~lHY~sk~~ 31 (75)
T PF06667_consen 12 VFMIFVAPIWLILHYRSKWK 31 (75)
T ss_pred HHHHHHHHHHHHHHHHHhcc
Confidence 59999999999999998753
No 114
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=31.85 E-value=1.7e+02 Score=31.66 Aligned_cols=65 Identities=20% Similarity=0.396 Sum_probs=29.7
Q ss_pred hHHHHHHhhhhhhhhhHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHhhhcccc------ccCCcchhhH
Q 018377 270 DFEELKLKLNVMDSQLREAEHTIRKLMEARK----LATREKDMLKHELEVLRRKSNLRR------VQVGFPLLFV 334 (357)
Q Consensus 270 d~~~l~~k~~~~~~~~~ea~~~i~kl~ee~~----~~~~~~~~L~~El~~lr~~~~~~~------~~~gf~l~fv 334 (357)
..+++..++..++..+.++..-+..|.++.+ .-.++++.|+.++..++.+...++ ..+.+||+|+
T Consensus 224 ~~e~l~~~i~~l~~ele~a~~~l~~l~~~~~~~GG~~~~~r~~Le~ei~~le~e~~e~~~~l~~l~~~~~p~~l~ 298 (650)
T TIGR03185 224 KYEDLAQEIAHLRNELEEAQRSLESLEKKFRSEGGDLFEEREQLERQLKEIEAARKANRAQLRELAADPLPLLLI 298 (650)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHhhh
Confidence 3444444445555555555555554444322 223444455555554443332211 2245676665
No 115
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=31.76 E-value=1.4e+02 Score=24.71 Aligned_cols=38 Identities=16% Similarity=0.246 Sum_probs=23.1
Q ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018377 278 LNVMDSQLREAEHTIRKLMEARKLATREKDMLKHELEV 315 (357)
Q Consensus 278 ~~~~~~~~~ea~~~i~kl~ee~~~~~~~~~~L~~El~~ 315 (357)
+..++.|.-.|-.+|.-|.=|-.---.+|..|.+|.+.
T Consensus 6 leqLE~KIqqAvdtI~LLqmEieELKekn~~L~~e~~~ 43 (79)
T PRK15422 6 FEKLEAKVQQAIDTITLLQMEIEELKEKNNSLSQEVQN 43 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45678888888888877655444444444444444443
No 116
>KOG2077 consensus JNK/SAPK-associated protein-1 [Signal transduction mechanisms]
Probab=31.56 E-value=1.5e+02 Score=32.88 Aligned_cols=68 Identities=26% Similarity=0.259 Sum_probs=51.8
Q ss_pred ccCCchhhHHHHHhhhHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 018377 255 ELKPAKDILELKLAKDFEELKLKLNVMDSQLREAEHTIRKLMEARKLATREKDMLKHELEVLRRKSNL 322 (357)
Q Consensus 255 ~~~~~~~~~~~~~~~d~~~l~~k~~~~~~~~~ea~~~i~kl~ee~~~~~~~~~~L~~El~~lr~~~~~ 322 (357)
|.||+-+++...+..-+.+|...-..|...++-+...=.||.|..+.--.|.+++++|++.-|++.+-
T Consensus 315 etKNALNiVKNDLIakVDeL~~E~~vLrgElea~kqak~Klee~i~elEEElk~~k~ea~~ar~~~~~ 382 (832)
T KOG2077|consen 315 ETKNALNIVKNDLIAKVDELTCEKDVLRGELEAVKQAKLKLEEKIRELEEELKKAKAEAEDARQKAKD 382 (832)
T ss_pred hhhhHHHHHHHHHHHHHHhhccHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 56777777655555566777776667777777777777788877777778899999999999887654
No 117
>PF06305 DUF1049: Protein of unknown function (DUF1049); InterPro: IPR010445 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=31.54 E-value=62 Score=24.27 Aligned_cols=26 Identities=31% Similarity=0.314 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018377 292 IRKLMEARKLATREKDMLKHELEVLR 317 (357)
Q Consensus 292 i~kl~ee~~~~~~~~~~L~~El~~lr 317 (357)
..+++-+.+..-++.+++++|++-||
T Consensus 43 ~~~~r~~~~~~~k~l~~le~e~~~lr 68 (68)
T PF06305_consen 43 RLRLRRRIRRLRKELKKLEKELEQLR 68 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 45667777777778888888887765
No 118
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=31.37 E-value=1.7e+02 Score=29.24 Aligned_cols=7 Identities=43% Similarity=0.567 Sum_probs=2.5
Q ss_pred HHHHHHH
Q 018377 304 REKDMLK 310 (357)
Q Consensus 304 ~~~~~L~ 310 (357)
++.+.++
T Consensus 99 ~~~n~~~ 105 (314)
T PF04111_consen 99 REYNELQ 105 (314)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 3333333
No 119
>PRK15308 putative fimbrial protein TcfA; Provisional
Probab=31.11 E-value=2.6e+02 Score=27.10 Aligned_cols=84 Identities=12% Similarity=0.148 Sum_probs=59.4
Q ss_pred CCeEEeCCeeEEeccCCceeEEEEEEEcCCCCeEEEEEee---CCC---------------CcEEEeCCcceeCCCCeEE
Q 018377 4 ELLDIQPLELKFTFEVKKQSTCVIQLGNKSDQCVAFKVKT---TSP---------------KKYCVRPNVSIIKPKAISD 65 (357)
Q Consensus 4 ~LL~I~P~EL~F~~e~~kq~sc~LtLtN~Sd~~VAFKVKT---TsP---------------kkY~VRPn~GvI~P~ss~~ 65 (357)
--|.|.|-.+.+... .+..+.++|.|.++.+..++|.. ++| .--.+.|..-+|.||++-.
T Consensus 16 a~l~V~Pi~~~i~a~--~~~~~~v~V~N~g~~~~~vqV~v~r~~~PG~~~e~~~~~~~~~~~eLiaSP~~l~L~pg~~q~ 93 (234)
T PRK15308 16 ANMLVYPMAAEIGAG--REEATSLFVYSKSDHTQYVRTRIKRIEHPATPQEKEVPAGNDIETGLVVSPEKFALPAGTTRT 93 (234)
T ss_pred ceEEEEEeEEEecCC--CcceEEEEEEeCCCCcEEEEEEEEEEcCCCCCCCcccccccCCCCcEEEcCceeEECCCCeEE
Confidence 346788887777543 24578999999999888777532 122 2367889999999999999
Q ss_pred EEEEeccCCCCCCCCCCCceEEEEEEEeCC
Q 018377 66 FTVTMQAQRVAPPDLQCKDKFLIQGIVVPF 95 (357)
Q Consensus 66 V~VTmqa~~e~P~d~q~kDKFLVQSv~v~~ 95 (357)
|.+..... + + ...-|.|....++.
T Consensus 94 IRli~lg~---~-~--kE~~YRl~~~pvp~ 117 (234)
T PRK15308 94 VRVISLQA---P-E--REEAWRVYFEPVAE 117 (234)
T ss_pred EEEEEcCC---C-C--cEEEEEEEEEecCC
Confidence 99887652 2 1 24457777777764
No 120
>KOG3119 consensus Basic region leucine zipper transcription factor [Transcription]
Probab=30.87 E-value=2.3e+02 Score=27.70 Aligned_cols=45 Identities=22% Similarity=0.231 Sum_probs=36.4
Q ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 018377 278 LNVMDSQLREAEHTIRKLMEARKLATREKDMLKHELEVLRRKSNL 322 (357)
Q Consensus 278 ~~~~~~~~~ea~~~i~kl~ee~~~~~~~~~~L~~El~~lr~~~~~ 322 (357)
+..-+.+..|...-|.-|..|+..-.++...|++|+..||+-...
T Consensus 210 R~~~k~~~~e~~~r~~~leken~~lr~~v~~l~~el~~~~~~~~~ 254 (269)
T KOG3119|consen 210 RDKRKQKEDEMAHRVAELEKENEALRTQVEQLKKELATLRRLFLQ 254 (269)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344455567777888889999999999999999999999986554
No 121
>PF10031 DUF2273: Small integral membrane protein (DUF2273); InterPro: IPR018730 Members of this family of hypothetical bacterial proteins have no known function.
Probab=30.64 E-value=41 Score=25.25 Aligned_cols=22 Identities=36% Similarity=0.597 Sum_probs=17.2
Q ss_pred Ccc-hhhHHHHHHHHHHHHHhcc
Q 018377 328 GFP-LLFVCMVALIGLVVGYLSH 349 (357)
Q Consensus 328 gf~-l~fv~~v~llg~~lGyl~~ 349 (357)
||. .+|+++.+.+|..+|+.+.
T Consensus 28 GF~~tl~i~~~~~iG~~iG~~~d 50 (51)
T PF10031_consen 28 GFWKTLFILLFAAIGYYIGKYLD 50 (51)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhc
Confidence 443 6788889999999998763
No 122
>COG5407 SEC63 Preprotein translocase subunit Sec63 [Intracellular trafficking and secretion]
Probab=29.08 E-value=35 Score=36.60 Aligned_cols=21 Identities=24% Similarity=0.320 Sum_probs=18.5
Q ss_pred cchhhHHHHHHHHHHHHHhcc
Q 018377 329 FPLLFVCMVALIGLVVGYLSH 349 (357)
Q Consensus 329 f~l~fv~~v~llg~~lGyl~~ 349 (357)
=+++||||++|+|++|-|..-
T Consensus 193 s~y~~v~Y~lllGv~LPy~v~ 213 (610)
T COG5407 193 SMYAFVMYSLLLGVFLPYWVY 213 (610)
T ss_pred CceeHHHHHHHHHHHHHHHHH
Confidence 368999999999999999864
No 123
>PF04420 CHD5: CHD5-like protein; InterPro: IPR007514 Members of this family are probably coiled-coil proteins that are similar to the CHD5 (Congenital heart disease 5) protein. The exact molecular function of these eukaryotic proteins is unknown.; PDB: 3SJA_H 3SJC_D 3SJB_D 3ZS8_D 3VLC_E.
Probab=28.37 E-value=85 Score=28.29 Aligned_cols=50 Identities=34% Similarity=0.389 Sum_probs=27.2
Q ss_pred HHHhhhHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccc
Q 018377 265 LKLAKDFEELKLKLNVMDSQLREAEHTIRKLMEARKLATREKDMLKHELEVLRRKSNLR 323 (357)
Q Consensus 265 ~~~~~d~~~l~~k~~~~~~~~~ea~~~i~kl~ee~~~~~~~~~~L~~El~~lr~~~~~~ 323 (357)
..+-+++.+++..++..-.+.+=|+- .|| -|+-|||..||+.+....+..
T Consensus 43 ~~l~~Ei~~l~~E~~~iS~qDeFAkw--aKl-------~Rk~~kl~~el~~~~~~~~~~ 92 (161)
T PF04420_consen 43 RQLRKEILQLKRELNAISAQDEFAKW--AKL-------NRKLDKLEEELEKLNKSLSSE 92 (161)
T ss_dssp HHHHHHHHHHHHHHTTS-TTTSHHHH--HHH-------HHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHcCCcHHHHHHH--HHH-------HHHHHHHHHHHHHHHHHHHHH
Confidence 33444555555444444444333332 233 367788888888887766554
No 124
>PF12690 BsuPI: Intracellular proteinase inhibitor; InterPro: IPR020481 BsuPI is a intracellular proteinase inhibitor that directly regulates the major intracellular proteinase (ISP-1) activity in vivo. It inhibits ISP-1 in the early stages of sporulation and then may be inactivated by a membrane-bound proteinase [].; PDB: 3ISY_A.
Probab=28.08 E-value=2.4e+02 Score=22.65 Aligned_cols=20 Identities=20% Similarity=0.355 Sum_probs=12.7
Q ss_pred EEEEEEEcCCCCeEEEEEee
Q 018377 24 TCVIQLGNKSDQCVAFKVKT 43 (357)
Q Consensus 24 sc~LtLtN~Sd~~VAFKVKT 43 (357)
.-.|+|+|++++.|-+..-|
T Consensus 3 ~~~l~v~N~s~~~v~l~f~s 22 (82)
T PF12690_consen 3 EFTLTVTNNSDEPVTLQFPS 22 (82)
T ss_dssp EEEEEEEE-SSS-EEEEESS
T ss_pred EEEEEEEeCCCCeEEEEeCC
Confidence 45778888888777776554
No 125
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=28.00 E-value=2.9e+02 Score=27.46 Aligned_cols=46 Identities=17% Similarity=0.193 Sum_probs=22.2
Q ss_pred HHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 018377 274 LKLKLNVMDSQLREAEHTIRKLMEARKLATREKDMLKHELEVLRRK 319 (357)
Q Consensus 274 l~~k~~~~~~~~~ea~~~i~kl~ee~~~~~~~~~~L~~El~~lr~~ 319 (357)
++.++.....++.+.+.-+..|+++......++.+++.|+.-+.+.
T Consensus 221 ~~~~i~~~k~~l~el~~el~~l~~~i~~~~~~k~~l~~eI~e~~~~ 266 (325)
T PF08317_consen 221 QKEEIEAKKKELAELQEELEELEEKIEELEEQKQELLAEIAEAEKI 266 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333334444444444455555555555555555555555443
No 126
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=27.98 E-value=1.2e+02 Score=28.23 Aligned_cols=53 Identities=23% Similarity=0.414 Sum_probs=36.4
Q ss_pred hhHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 018377 269 KDFEELKLKLNVMDSQLREAEHTIRKLMEARKLATREKDMLKHELEVLRRKSNL 322 (357)
Q Consensus 269 ~d~~~l~~k~~~~~~~~~ea~~~i~kl~ee~~~~~~~~~~L~~El~~lr~~~~~ 322 (357)
.-++.|+.++..++.+..+....|..+..+|... .+|..+-+++..|+.+...
T Consensus 69 ~~~~~l~~~~~~~~~~i~~l~~~i~~~~~~r~~~-~eR~~~l~~l~~l~~~~~~ 121 (188)
T PF03962_consen 69 NKLEKLQKEIEELEKKIEELEEKIEEAKKGREES-EEREELLEELEELKKELKE 121 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc-HHHHHHHHHHHHHHHHHHH
Confidence 4566666667777777777777777776655444 7888888888888766543
No 127
>PF06072 Herpes_US9: Alphaherpesvirus tegument protein US9; InterPro: IPR009278 This family consists of several US9 and related proteins from the Alphaherpesviruses. The function of the US9 protein is unknown although in Bovine herpesvirus 5 Us9 is essential for the anterograde spread of the virus from the olfactory mucosa to the bulb [].; GO: 0019033 viral tegument
Probab=27.94 E-value=36 Score=26.68 Aligned_cols=14 Identities=14% Similarity=0.176 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHhcc
Q 018377 336 MVALIGLVVGYLSH 349 (357)
Q Consensus 336 ~v~llg~~lGyl~~ 349 (357)
.+.+++.+||+|+-
T Consensus 44 ~~c~~S~~lG~~~~ 57 (60)
T PF06072_consen 44 ALCVLSGGLGALVA 57 (60)
T ss_pred HHHHHHHHHHHHhh
Confidence 45677788888875
No 128
>COG3121 FimC P pilus assembly protein, chaperone PapD [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=27.79 E-value=1.5e+02 Score=28.28 Aligned_cols=44 Identities=11% Similarity=0.166 Sum_probs=33.3
Q ss_pred EEEEEEcCCCCeEEEE--EeeCCCCcEEEeCCcceeCCCCeEEEEEEe
Q 018377 25 CVIQLGNKSDQCVAFK--VKTTSPKKYCVRPNVSIIKPKAISDFTVTM 70 (357)
Q Consensus 25 c~LtLtN~Sd~~VAFK--VKTTsPkkY~VRPn~GvI~P~ss~~V~VTm 70 (357)
..|++.|+|..||.|- .-+. .++-.. -+.+.|.|+++..+.+.-
T Consensus 165 ~~l~v~Nptpy~vtl~~~~l~~-~~~~~~-~~~~mv~P~s~~~~~l~~ 210 (235)
T COG3121 165 NLLTVKNPTPYYVTLANLTLNV-GGRKLG-LNSGMVAPFSTRQFPLPS 210 (235)
T ss_pred CEEEEECCCCcEEEEEEEEEee-CceecC-CCcceECCCccceeecCC
Confidence 4899999999999998 4433 333333 788999999999866543
No 129
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=27.65 E-value=2.6e+02 Score=24.39 Aligned_cols=47 Identities=26% Similarity=0.305 Sum_probs=27.7
Q ss_pred HHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018377 271 FEELKLKLNVMDSQLREAEHTIRKLMEARKLATREKDMLKHELEVLR 317 (357)
Q Consensus 271 ~~~l~~k~~~~~~~~~ea~~~i~kl~ee~~~~~~~~~~L~~El~~lr 317 (357)
++.|.+.+.-++..+.-...-|.+|..+|+.+.+|.=+|-.|.+-++
T Consensus 18 ve~L~s~lr~~E~E~~~l~~el~~l~~~r~~l~~Eiv~l~~~~e~~~ 64 (120)
T PF12325_consen 18 VERLQSQLRRLEGELASLQEELARLEAERDELREEIVKLMEENEELR 64 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555666666666666666666666666666555555555555544
No 130
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=27.52 E-value=1.9e+02 Score=23.61 Aligned_cols=39 Identities=26% Similarity=0.356 Sum_probs=17.7
Q ss_pred hhhhhhHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHh
Q 018377 280 VMDSQLREAEHTIRK-------LMEARKLATREKDMLKHELEVLRR 318 (357)
Q Consensus 280 ~~~~~~~ea~~~i~k-------l~ee~~~~~~~~~~L~~El~~lr~ 318 (357)
.++.|...|-.+|.- |+|++++-.|+-+.+|+--+-|++
T Consensus 8 kLE~KiqqAvdTI~LLQmEieELKEknn~l~~e~q~~q~~reaL~~ 53 (79)
T COG3074 8 KLEAKVQQAIDTITLLQMEIEELKEKNNSLSQEVQNAQHQREALER 53 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHH
Confidence 345555555555443 344444444444433433334443
No 131
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=27.21 E-value=3.2e+02 Score=24.56 Aligned_cols=55 Identities=24% Similarity=0.264 Sum_probs=36.8
Q ss_pred HHHhhhHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 018377 265 LKLAKDFEELKLKLNVMDSQLREAEHTIRKLMEARKLATREKDMLKHELEVLRRK 319 (357)
Q Consensus 265 ~~~~~d~~~l~~k~~~~~~~~~ea~~~i~kl~ee~~~~~~~~~~L~~El~~lr~~ 319 (357)
.++..|.++-+.....++.++++..+-+..|..|-.+-..+++.|-+++...+.+
T Consensus 41 e~~~~daEn~k~eie~L~~el~~lt~el~~L~~EL~~l~sEk~~L~k~lq~~q~k 95 (140)
T PF10473_consen 41 ECLILDAENSKAEIETLEEELEELTSELNQLELELDTLRSEKENLDKELQKKQEK 95 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566777777777777777777766666666666666666666666666555443
No 132
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=26.95 E-value=3.5e+02 Score=23.31 Aligned_cols=30 Identities=23% Similarity=0.285 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 018377 291 TIRKLMEARKLATREKDMLKHELEVLRRKS 320 (357)
Q Consensus 291 ~i~kl~ee~~~~~~~~~~L~~El~~lr~~~ 320 (357)
.-..|.+.+.+--.++..|+.|+..+.++.
T Consensus 85 a~~~l~~~e~sw~~qk~~le~e~~~~~~r~ 114 (132)
T PF07926_consen 85 AKAELEESEASWEEQKEQLEKELSELEQRI 114 (132)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 344455555556667888889988887654
No 133
>KOG0554 consensus Asparaginyl-tRNA synthetase (mitochondrial) [Translation, ribosomal structure and biogenesis]
Probab=26.60 E-value=30 Score=36.35 Aligned_cols=44 Identities=36% Similarity=0.490 Sum_probs=36.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHH---HHHhhhccccccCCcchhhHHHHHH
Q 018377 294 KLMEARKLATREKDMLKHELE---VLRRKSNLRRVQVGFPLLFVCMVAL 339 (357)
Q Consensus 294 kl~ee~~~~~~~~~~L~~El~---~lr~~~~~~~~~~gf~l~fv~~v~l 339 (357)
-|+|||..-++++-..+.|++ -|||.++.. .+||.|=|==|+..
T Consensus 378 SlREe~~~~l~e~g~~~~~~eWYldLRryG~vp--hgGFGlGfER~lq~ 424 (446)
T KOG0554|consen 378 SLREERKARLKERGLTREELEWYLDLRRYGSVP--HGGFGLGFERMLQY 424 (446)
T ss_pred ccchhhHHHHHhcCCCccccceehhhhhcCCCC--CCcccccHHHHHHH
Confidence 478999888899888888887 799999887 79999988766544
No 134
>TIGR02532 IV_pilin_GFxxxE prepilin-type N-terminal cleavage/methylation domain. This model describes many but not all examples of the N-terminal region of bacterial proteins that resemble type IV pilins at their N-terminus, with a cleavage site G^FxxxE followed by a hydrophobic stretch. The new N-terminal residue, usually Phe, is methylated. Separate domains of the prepilin peptidase appear responsible for cleavage and methylation. Proteins with this N-terminal region include type IV pilins and other components of pilus biogenesis, competence proteins, and type II secretion proteins. Typically several proteins in a single operon have this N-terminal domain. The N-terminal cleavage and methylation site is described by PROSITE motif PS00409 as [KRHEQSTAG]-G-[FYLIVM]-[ST]-[LT]-[LIVP]-E-[LIVMFWSTAG](14).
Probab=26.37 E-value=89 Score=20.14 Aligned_cols=22 Identities=27% Similarity=0.612 Sum_probs=13.8
Q ss_pred cCCcchhhH-HHHHHHHHHHHHh
Q 018377 326 QVGFPLLFV-CMVALIGLVVGYL 347 (357)
Q Consensus 326 ~~gf~l~fv-~~v~llg~~lGyl 347 (357)
|.||+++=+ +.++++|+++...
T Consensus 1 ~~GfTLiEllial~i~~i~~~~~ 23 (26)
T TIGR02532 1 QRGFTLIELLVVLAILGILAAIA 23 (26)
T ss_pred CCceeHHHHHHHHHHHHHHHHHh
Confidence 358998744 4556666666554
No 135
>PF05008 V-SNARE: Vesicle transport v-SNARE protein N-terminus; InterPro: IPR007705 V-SNARE proteins are required for protein traffic between eukaryotic organelles. The v-SNAREs on transport vesicles interact with t-SNAREs on target membranes in order to facilitate this []. This domain is the N-terminal half of the V-Snare proteins. ; GO: 0006886 intracellular protein transport, 0016020 membrane; PDB: 2V8S_V 1VCS_A 3ONL_C 3ONJ_A 2QYW_A.
Probab=26.05 E-value=1.9e+02 Score=22.36 Aligned_cols=45 Identities=20% Similarity=0.299 Sum_probs=28.6
Q ss_pred HHHHhhhhhhhhhHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHH
Q 018377 273 ELKLKLNVMDSQLREAEHTIRKLMEARKLA-TREKDMLKHELEVLR 317 (357)
Q Consensus 273 ~l~~k~~~~~~~~~ea~~~i~kl~ee~~~~-~~~~~~L~~El~~lr 317 (357)
+.+..+...+..+.||..+|..+.-|-+.. ..++..++..+.-.|
T Consensus 22 ~r~~~i~~~e~~l~ea~~~l~qMe~E~~~~p~s~r~~~~~kl~~yr 67 (79)
T PF05008_consen 22 QRKSLIREIERDLDEAEELLKQMELEVRSLPPSERNQYKSKLRSYR 67 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCTS-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 455667778888999999999887665433 244444444444333
No 136
>smart00637 CBD_II CBD_II domain.
Probab=25.82 E-value=2.7e+02 Score=22.09 Aligned_cols=47 Identities=17% Similarity=0.195 Sum_probs=30.4
Q ss_pred EEEEEEEcCCCCe-----EEEEEee-------------CCCCcEEEeCC--cceeCCCCeEEEEEEe
Q 018377 24 TCVIQLGNKSDQC-----VAFKVKT-------------TSPKKYCVRPN--VSIIKPKAISDFTVTM 70 (357)
Q Consensus 24 sc~LtLtN~Sd~~-----VAFKVKT-------------TsPkkY~VRPn--~GvI~P~ss~~V~VTm 70 (357)
...|+|+|+++.+ |.|.+-. .....|.++|. .+.|.||+++.|-+..
T Consensus 9 ~~~v~vtN~~~~~~~~W~v~~~~~~~~~i~~~Wn~~~~~~g~~~~~~~~~wn~~i~~G~s~~~gf~~ 75 (92)
T smart00637 9 TANVTVTNTGSSAINGWTVTFDLPGGQTVTNSWNATVSQSGGHVTATNASWNGTIAPGGSVSFGFQG 75 (92)
T ss_pred EEEEEEEeCCCCcccCeEEEEEcCCCcEEeeeEEEEEEecCCEEEEecCccccccCCCCEEEEEEEe
Confidence 4577888876543 3444311 12346999965 4899999988876655
No 137
>PF08112 ATP-synt_E_2: ATP synthase epsilon subunit; InterPro: IPR012508 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. A-ATPases (or A1A0-ATPase) (3.6.3.14 from EC) are found exclusively in Archaea and display a close resemblance in structure and subunit composition with V-ATPases, although their function in both ATP synthesis and ATP hydrolysis is closer to that of F-ATPases []. A-ATPases are composed of two linked complexes: the A1 complex consisting of seven subunits contains the catalytic core that synthesizes/hydrolyses ATP, while the A0 complex consisting of at least two subunits forms the membrane-spanning pore []. The rotary motor in A-ATPases is composed of only two subunits, the stator subunit I and the rotor subunit C []. A-ATPases may have arisen as an adaptation to the different cellular needs and the more extreme environmental conditions faced by Archaeal species. The epsilon subunit is the smallest (7 kDa) of those found in the A1 complex. Unlike the A, B and C subunits, the epsilon subunit does not have a homologous counterpart in F- or V-ATPases []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0042626 ATPase activity, coupled to transmembrane movement of substances, 0015986 ATP synthesis coupled proton transport, 0033178 proton-transporting two-sector ATPase complex, catalytic domain
Probab=25.67 E-value=2.3e+02 Score=21.90 Aligned_cols=37 Identities=24% Similarity=0.384 Sum_probs=24.8
Q ss_pred hhhhhHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 018377 281 MDSQLREA-EHTIRKLMEARKLATREKDMLKHELEVLRRKS 320 (357)
Q Consensus 281 ~~~~~~ea-~~~i~kl~ee~~~~~~~~~~L~~El~~lr~~~ 320 (357)
+..||.+- ..+.++|..|-...+.++. .||+.+||+.
T Consensus 16 Lk~kLd~Kk~Eil~~ln~EY~kiLk~r~---~~lEevKrk~ 53 (56)
T PF08112_consen 16 LKSKLDEKKSEILSNLNMEYEKILKQRR---KELEEVKRKA 53 (56)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHH
Confidence 33344443 3367888999888877664 5888888864
No 138
>PF13815 Dzip-like_N: Iguana/Dzip1-like DAZ-interacting protein N-terminal
Probab=25.61 E-value=1.9e+02 Score=24.64 Aligned_cols=35 Identities=17% Similarity=0.313 Sum_probs=17.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 018377 285 LREAEHTIRKLMEARKLATREKDMLKHELEVLRRK 319 (357)
Q Consensus 285 ~~ea~~~i~kl~ee~~~~~~~~~~L~~El~~lr~~ 319 (357)
+...+.-+..+.++.....+...++.+|+..||++
T Consensus 82 ~~~l~~~~~~~~~~~~~l~~~~~~~~~~~k~lk~E 116 (118)
T PF13815_consen 82 LEQLEERLQELQQEIEKLKQKLKKQKEEIKKLKKE 116 (118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33334444444444455555555556666666554
No 139
>TIGR03592 yidC_oxa1_cterm membrane protein insertase, YidC/Oxa1 family, C-terminal domain. This model describes full-length from some species, and the C-terminal region only from other species, of the YidC/Oxa1 family of proteins. This domain appears to be univeral among bacteria (although absent from Archaea). The well-characterized YidC protein from Escherichia coli and its close homologs contain a large N-terminal periplasmic domain in addition to the region modeled here.
Probab=25.51 E-value=3.3e+02 Score=24.65 Aligned_cols=32 Identities=16% Similarity=0.348 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccc
Q 018377 289 EHTIRKLMEARKLATREKDMLKHELEVLRRKSNLR 323 (357)
Q Consensus 289 ~~~i~kl~ee~~~~~~~~~~L~~El~~lr~~~~~~ 323 (357)
.--+.+++|+-+ .+++++|+|+..|.|+.+-+
T Consensus 35 ~P~~~~i~~k~k---~~~~~~~~e~~~l~k~~~~~ 66 (181)
T TIGR03592 35 QPKLKEIQEKYK---DDPQKLQQEMMKLYKEEGVN 66 (181)
T ss_pred hHHHHHHHHHHH---hhHHHHHHHHHHHHHHhCCC
Confidence 334444444433 24577899999888765544
No 140
>PF08838 DUF1811: Protein of unknown function (DUF1811); InterPro: IPR014938 This entry consists uncharacterised bacterial proteins. Some of the proteins are annotated as being transcriptional regulators (see Q4MQL7 from SWISSPROT, Q65MA2 from SWISSPROT). The structure of one of the proteins has revealed a beta-barrel like structure with helix-turn-helix like motif. ; PDB: 2YXY_A 1SF9_A.
Probab=25.24 E-value=88 Score=26.96 Aligned_cols=44 Identities=23% Similarity=0.342 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHHhhhccccccCCcchhhHHHHHHHHHHHHHhccc
Q 018377 306 KDMLKHELEVLRRKSNLRRVQVGFPLLFVCMVALIGLVVGYLSHP 350 (357)
Q Consensus 306 ~~~L~~El~~lr~~~~~~~~~~gf~l~fv~~v~llg~~lGyl~~~ 350 (357)
...||||+..|+.+..+. -|.|..==|.++--=+-+.-.||+-|
T Consensus 9 ~~EL~~Ei~~L~ekarKA-Eq~G~~nE~aV~erK~~mAksYl~dp 52 (102)
T PF08838_consen 9 EEELRQEIARLKEKARKA-EQLGIVNEYAVYERKIIMAKSYLLDP 52 (102)
T ss_dssp HHHHHHHHHHHHHHHHHH-HHCT-HHHHHHHHHHHHHHHHCCS-G
T ss_pred HHHHHHHHHHHHHHHHHH-HHcCCccHHHHHHHHHHHHHHHhCCh
Confidence 346888888888877665 57788777777777777777787754
No 141
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=25.17 E-value=1.9e+02 Score=29.85 Aligned_cols=41 Identities=20% Similarity=0.189 Sum_probs=26.5
Q ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 018377 278 LNVMDSQLREAEHTIRKLMEARKLATREKDMLKHELEVLRR 318 (357)
Q Consensus 278 ~~~~~~~~~ea~~~i~kl~ee~~~~~~~~~~L~~El~~lr~ 318 (357)
+..++.+....+.-+..|.++.+..-+|..+|+.|++.|+.
T Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 64 (398)
T PTZ00454 24 LKELEKELEFLDIQEEYIKEEQKNLKRELIRAKEEVKRIQS 64 (398)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 33444455555666666677766666777777777777763
No 142
>PF13473 Cupredoxin_1: Cupredoxin-like domain; PDB: 1IBZ_D 1IC0_E 1IBY_D.
Probab=25.13 E-value=3.6e+02 Score=21.78 Aligned_cols=53 Identities=11% Similarity=0.223 Sum_probs=32.1
Q ss_pred EEeCCeeEEeccCCceeEEEEEEEcCCCCeEEEEEeeCCCCcEEEeCCcceeCCCCeEEEEEEec
Q 018377 7 DIQPLELKFTFEVKKQSTCVIQLGNKSDQCVAFKVKTTSPKKYCVRPNVSIIKPKAISDFTVTMQ 71 (357)
Q Consensus 7 ~I~P~EL~F~~e~~kq~sc~LtLtN~Sd~~VAFKVKTTsPkkY~VRPn~GvI~P~ss~~V~VTmq 71 (357)
..+|.++..+. ++ .-.|+++|..+....|-+.. +.+ ...|.||++..+.++-.
T Consensus 31 ~f~P~~i~v~~--G~--~v~l~~~N~~~~~h~~~i~~-----~~~---~~~l~~g~~~~~~f~~~ 83 (104)
T PF13473_consen 31 GFSPSTITVKA--GQ--PVTLTFTNNDSRPHEFVIPD-----LGI---SKVLPPGETATVTFTPL 83 (104)
T ss_dssp EEES-EEEEET--TC--EEEEEEEE-SSS-EEEEEGG-----GTE---EEEE-TT-EEEEEEEE-
T ss_pred eEecCEEEEcC--CC--eEEEEEEECCCCcEEEEECC-----Cce---EEEECCCCEEEEEEcCC
Confidence 45677776644 22 34689999988888887766 111 26799999999998543
No 143
>KOG3202 consensus SNARE protein TLG1/Syntaxin 6 [Intracellular trafficking, secretion, and vesicular transport]
Probab=24.88 E-value=5.7e+02 Score=24.92 Aligned_cols=22 Identities=23% Similarity=0.098 Sum_probs=13.8
Q ss_pred CCcchhhHHHHHHHHHHHHHhc
Q 018377 327 VGFPLLFVCMVALIGLVVGYLS 348 (357)
Q Consensus 327 ~gf~l~fv~~v~llg~~lGyl~ 348 (357)
-|--...+++||++|+++-.++
T Consensus 213 ~~~~~~il~l~~~~~lvv~i~~ 234 (235)
T KOG3202|consen 213 CSQWCAILLLVGLLLLVVIIFI 234 (235)
T ss_pred ccchhHHHHHHHHHHHHHHHhc
Confidence 3444555677888887775543
No 144
>PRK01844 hypothetical protein; Provisional
Probab=24.68 E-value=52 Score=26.68 Aligned_cols=20 Identities=15% Similarity=0.463 Sum_probs=13.4
Q ss_pred cchhhHHHHHHHHHHHHHhc
Q 018377 329 FPLLFVCMVALIGLVVGYLS 348 (357)
Q Consensus 329 f~l~fv~~v~llg~~lGyl~ 348 (357)
+-++.+++-.|+|.++||++
T Consensus 5 ~~I~l~I~~li~G~~~Gff~ 24 (72)
T PRK01844 5 LGILVGVVALVAGVALGFFI 24 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34455556667788888876
No 145
>PF01618 MotA_ExbB: MotA/TolQ/ExbB proton channel family MotA family only; InterPro: IPR002898 This family groups together integral membrane proteins that appear to be involved in translocation of proteins across a membrane. These proteins are probably proton channels. MotA is an essential component of the flagellar motor that uses a proton gradient to generate rotational motion in the flagellar []. ExbB is part of the TonB-dependent transduction complex. The TonB complex uses the proton gradient across the inner bacterial membrane to transport large molecules across the outer bacterial membrane.; GO: 0008565 protein transporter activity, 0006810 transport, 0016020 membrane
Probab=24.60 E-value=1.5e+02 Score=25.51 Aligned_cols=16 Identities=25% Similarity=0.648 Sum_probs=12.3
Q ss_pred hHHHHHHHHHHHHHhc
Q 018377 333 FVCMVALIGLVVGYLS 348 (357)
Q Consensus 333 fv~~v~llg~~lGyl~ 348 (357)
+.-++||+|+++|.+.
T Consensus 64 ~aP~lGLlGTv~Gmi~ 79 (139)
T PF01618_consen 64 IAPLLGLLGTVIGMIE 79 (139)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4457899999999763
No 146
>PF03672 UPF0154: Uncharacterised protein family (UPF0154); InterPro: IPR005359 The proteins in this entry are functionally uncharacterised.
Probab=24.56 E-value=60 Score=25.71 Aligned_cols=16 Identities=19% Similarity=0.737 Sum_probs=11.9
Q ss_pred hHHHHHHHHHHHHHhc
Q 018377 333 FVCMVALIGLVVGYLS 348 (357)
Q Consensus 333 fv~~v~llg~~lGyl~ 348 (357)
.+++..++|.++||++
T Consensus 2 ~iilali~G~~~Gff~ 17 (64)
T PF03672_consen 2 LIILALIVGAVIGFFI 17 (64)
T ss_pred hHHHHHHHHHHHHHHH
Confidence 4556667888999876
No 147
>PF15035 Rootletin: Ciliary rootlet component, centrosome cohesion
Probab=24.34 E-value=2.7e+02 Score=25.85 Aligned_cols=35 Identities=29% Similarity=0.376 Sum_probs=27.0
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018377 280 VMDSQLREAEHTIRKLMEARKLATREKDMLKHELE 314 (357)
Q Consensus 280 ~~~~~~~ea~~~i~kl~ee~~~~~~~~~~L~~El~ 314 (357)
-+..++++|......|+++-...+++-..|++||+
T Consensus 85 lLReQLEq~~~~N~~L~~dl~klt~~~~~l~~eL~ 119 (182)
T PF15035_consen 85 LLREQLEQARKANEALQEDLQKLTQDWERLRDELE 119 (182)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 36677777778888888888888888888877776
No 148
>KOG4657 consensus Uncharacterized conserved protein [Function unknown]
Probab=24.11 E-value=3.5e+02 Score=26.64 Aligned_cols=53 Identities=23% Similarity=0.127 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccCCcchhhHHHHHHHHHHHHHhcc
Q 018377 291 TIRKLMEARKLATREKDMLKHELEVLRRKSNLRRVQVGFPLLFVCMVALIGLVVGYLSH 349 (357)
Q Consensus 291 ~i~kl~ee~~~~~~~~~~L~~El~~lr~~~~~~~~~~gf~l~fv~~v~llg~~lGyl~~ 349 (357)
++.+=.+++.-..|+..-+|+||+.||+..-....--| =++.+|+.-.|.++|
T Consensus 80 L~~ek~~~q~~ieqeik~~q~elEvl~~n~Q~lkeE~d------d~keiIs~kr~~~~K 132 (246)
T KOG4657|consen 80 LKTEKEARQMGIEQEIKATQSELEVLRRNLQLLKEEKD------DSKEIISQKRQALSK 132 (246)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh------hHHHHHHHHHHHHHH
Confidence 44444445556678888889999988865432211112 455556555555443
No 149
>KOG2196 consensus Nuclear porin [Nuclear structure]
Probab=23.51 E-value=1.7e+02 Score=28.88 Aligned_cols=67 Identities=19% Similarity=0.168 Sum_probs=52.3
Q ss_pred ccccCCchhhHHHHHhhhHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 018377 253 ASELKPAKDILELKLAKDFEELKLKLNVMDSQLREAEHTIRKLMEARKLATREKDMLKHELEVLRRK 319 (357)
Q Consensus 253 ~~~~~~~~~~~~~~~~~d~~~l~~k~~~~~~~~~ea~~~i~kl~ee~~~~~~~~~~L~~El~~lr~~ 319 (357)
|.|+.|--...+..-.+=|.+...++|..+.-|-+-...|+.|--|-..+-.-.++|-|||+++-+.
T Consensus 76 LeeliNkWs~el~~Qe~vF~~q~~qvNaWDr~LI~ngekI~~Ly~e~~~vk~~qkrLdq~L~~I~sq 142 (254)
T KOG2196|consen 76 LEELINKWSLELEEQERVFLQQATQVNAWDRTLIENGEKISGLYNEVVKVKLDQKRLDQELEFILSQ 142 (254)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCcHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 3344444344444445667777888999999999999999999999999999999999999987653
No 150
>PRK00523 hypothetical protein; Provisional
Probab=23.46 E-value=60 Score=26.33 Aligned_cols=21 Identities=24% Similarity=0.540 Sum_probs=15.2
Q ss_pred CcchhhHHHHHHHHHHHHHhc
Q 018377 328 GFPLLFVCMVALIGLVVGYLS 348 (357)
Q Consensus 328 gf~l~fv~~v~llg~~lGyl~ 348 (357)
|+-++.+++..|+|.++||++
T Consensus 5 ~l~I~l~i~~li~G~~~Gffi 25 (72)
T PRK00523 5 GLALGLGIPLLIVGGIIGYFV 25 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 455566666678889999886
No 151
>PF13205 Big_5: Bacterial Ig-like domain
Probab=23.38 E-value=3.7e+02 Score=21.10 Aligned_cols=57 Identities=18% Similarity=0.269 Sum_probs=36.2
Q ss_pred eeEEeccCC-ceeEEEEEEEc--CCCCeEEEEEeeCCCCcEEEeCCcceeCCCCeEEEEEEec
Q 018377 12 ELKFTFEVK-KQSTCVIQLGN--KSDQCVAFKVKTTSPKKYCVRPNVSIIKPKAISDFTVTMQ 71 (357)
Q Consensus 12 EL~F~~e~~-kq~sc~LtLtN--~Sd~~VAFKVKTTsPkkY~VRPn~GvI~P~ss~~V~VTmq 71 (357)
.|.|..+.+ ......+.+.+ ....+|.+. ....+.+.++|. +-+.+|..+.|.|.-.
T Consensus 26 ~i~Fs~~v~~~s~~~~~~~~~~~~~~~~v~~~--~~~~~~~~i~p~-~~L~~~t~Y~v~i~~~ 85 (107)
T PF13205_consen 26 VITFSEPVDPASVSSAITITDSNGSGVPVSFS--SWDGNTLTITPS-QPLKPGTTYTVTIDSG 85 (107)
T ss_pred EEEECCceecCccceEEEEEecCCCcEEEEEE--EccCCEEEEEEC-CcCCCCCEEEEEECCC
Confidence 466766654 22334555543 344455555 444588999998 5678899999998543
No 152
>PF02060 ISK_Channel: Slow voltage-gated potassium channel; InterPro: IPR000369 Potassium channels are the most diverse group of the ion channel family [, ]. They are important in shaping the action potential, and in neuronal excitability and plasticity []. The potassium channel family is composed of several functionally distinct isoforms, which can be broadly separated into 2 groups []: the practically non-inactivating 'delayed' group and the rapidly inactivating 'transient' group. These are all highly similar proteins, with only small amino acid changes causing the diversity of the voltage-dependent gating mechanism, channel conductance and toxin binding properties. Each type of K+ channel is activated by different signals and conditions depending on their type of regulation: some open in response to depolarisation of the plasma membrane; others in response to hyperpolarisation or an increase in intracellular calcium concentration; some can be regulated by binding of a transmitter, together with intracellular kinases; while others are regulated by GTP-binding proteins or other second messengers []. In eukaryotic cells, K+ channels are involved in neural signalling and generation of the cardiac rhythm, act as effectors in signal transduction pathways involving G protein-coupled receptors (GPCRs) and may have a role in target cell lysis by cytotoxic T-lymphocytes []. In prokaryotic cells, they play a role in the maintenance of ionic homeostasis []. All K+ channels discovered so far possess a core of alpha subunits, each comprising either one or two copies of a highly conserved pore loop domain (P-domain). The P-domain contains the sequence (T/SxxTxGxG), which has been termed the K+ selectivity sequence. In families that contain one P-domain, four subunits assemble to form a selective pathway for K+ across the membrane. However, it remains unclear how the 2 P-domain subunits assemble to form a selective pore. The functional diversity of these families can arise through homo- or hetero-associations of alpha subunits or association with auxiliary cytoplasmic beta subunits. K+ channel subunits containing one pore domain can be assigned into one of two superfamilies: those that possess six transmembrane (TM) domains and those that possess only two TM domains. The six TM domain superfamily can be further subdivided into conserved gene families: the voltage-gated (Kv) channels; the KCNQ channels (originally known as KvLQT channels); the EAG-like K+ channels; and three types of calcium (Ca)-activated K+ channels (BK, IK and SK) []. The 2TM domain family comprises inward-rectifying K+ channels. In addition, there are K+ channel alpha-subunits that possess two P-domains. These are usually highly regulated K+ selective leak channels. Two types of beta subunit (KCNE and KCNAB) are presently known to associate with voltage-gated alpha subunits (Kv, KCNQ and eag-like). However, not all combinations of alpha and beta subunits are possible. The KCNE family of K+ channel subunits are membrane glycoproteins that possess a single transmembrane (TM) domain. They share no structural relationship with the alpha subunit proteins, which possess pore forming domains. The subunits appear to have a regulatory function, modulating the kinetics and voltage dependence of the alpha subunits of voltage-dependent K+ channels. KCNE subunits are formed from short polypeptides of ~130 amino acids, and are divided into five subfamilies: KCNE1 (MinK/IsK), KCNE2 (MiRP1), KCNE3 (MiRP2), KCNE4 (MiRP3) and KCNE1L (AMMECR2). ; GO: 0005249 voltage-gated potassium channel activity, 0006811 ion transport, 0016020 membrane; PDB: 2K21_A.
Probab=23.36 E-value=72 Score=28.51 Aligned_cols=21 Identities=14% Similarity=0.474 Sum_probs=11.5
Q ss_pred CCcchhhHHH-H-----HHHHHHHHHh
Q 018377 327 VGFPLLFVCM-V-----ALIGLVVGYL 347 (357)
Q Consensus 327 ~gf~l~fv~~-v-----~llg~~lGyl 347 (357)
.+...+|+++ | .++||+|||+
T Consensus 40 ~~~~~lYIL~vmgfFgff~~gImlsyv 66 (129)
T PF02060_consen 40 DDNEYLYILVVMGFFGFFTVGIMLSYV 66 (129)
T ss_dssp -SSTT-HHHHHHHHHHHHHHHHHHHHH
T ss_pred CCceeehHHHHHHHHHHHHHHHHHHHH
Confidence 3455666644 3 3567777775
No 153
>PF03904 DUF334: Domain of unknown function (DUF334); InterPro: IPR005602 This is a family of proteins found in Staphylococcus aureus plasmid with no characterised function.
Probab=23.12 E-value=3.3e+02 Score=26.68 Aligned_cols=42 Identities=21% Similarity=0.320 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccCCcchhhH
Q 018377 288 AEHTIRKLMEARKLATREKDMLKHELEVLRRKSNLRRVQVGFPLLFV 334 (357)
Q Consensus 288 a~~~i~kl~ee~~~~~~~~~~L~~El~~lr~~~~~~~~~~gf~l~fv 334 (357)
+..-|.++++|..+.+|+ .+|..|-.++.-+.- -.||-.+|+
T Consensus 118 ~~~ei~k~r~e~~~ml~e---vK~~~E~y~k~~k~~--~~gi~aml~ 159 (230)
T PF03904_consen 118 AQNEIKKVREENKSMLQE---VKQSHEKYQKRQKSM--YKGIGAMLF 159 (230)
T ss_pred HHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHH--HHhHHHHHH
Confidence 344578888888888777 666777766543321 235554444
No 154
>PHA02562 46 endonuclease subunit; Provisional
Probab=23.03 E-value=2.4e+02 Score=29.27 Aligned_cols=16 Identities=19% Similarity=0.206 Sum_probs=6.7
Q ss_pred HHHHHHHHHHHHHHHH
Q 018377 301 LATREKDMLKHELEVL 316 (357)
Q Consensus 301 ~~~~~~~~L~~El~~l 316 (357)
+.++++..|+.|++-|
T Consensus 355 ~~~~~~~~l~~ei~~l 370 (562)
T PHA02562 355 TLVDKAKKVKAAIEEL 370 (562)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3334444444444433
No 155
>PF04576 Zein-binding: Zein-binding; InterPro: IPR007656 This is a family of uncharacterised proteins.
Probab=22.96 E-value=2.3e+02 Score=24.07 Aligned_cols=32 Identities=25% Similarity=0.214 Sum_probs=23.9
Q ss_pred HHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHH
Q 018377 272 EELKLKLNVMDSQLREAEHTIRKLMEARKLAT 303 (357)
Q Consensus 272 ~~l~~k~~~~~~~~~ea~~~i~kl~ee~~~~~ 303 (357)
.||-...+..-+--+||-+||.+|.+|+.+.-
T Consensus 20 ~ELEeER~AaAsAA~EAMaMI~RLQ~EKAa~~ 51 (94)
T PF04576_consen 20 AELEEERSAAASAASEAMAMILRLQEEKAAVE 51 (94)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 44545566666677899999999999997643
No 156
>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA. They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.
Probab=22.85 E-value=2.6e+02 Score=28.16 Aligned_cols=50 Identities=26% Similarity=0.378 Sum_probs=26.7
Q ss_pred HHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 018377 271 FEELKLKLNVMDSQLREAEHTIRKLMEARKLATREKDMLKHELEVLRRKS 320 (357)
Q Consensus 271 ~~~l~~k~~~~~~~~~ea~~~i~kl~ee~~~~~~~~~~L~~El~~lr~~~ 320 (357)
+.-||.++.++++.+.+...-+.+..-|-..--+..+.|+.|++.||-..
T Consensus 114 vd~Lkd~lee~eE~~~~~~re~~eK~~elEr~K~~~d~L~~e~~~Lre~L 163 (302)
T PF09738_consen 114 VDLLKDKLEELEETLAQLQREYREKIRELERQKRAHDSLREELDELREQL 163 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455566666666665554443333333344455566666666666544
No 157
>PRK01026 tetrahydromethanopterin S-methyltransferase subunit G; Provisional
Probab=22.65 E-value=1.1e+02 Score=25.26 Aligned_cols=25 Identities=24% Similarity=0.521 Sum_probs=20.4
Q ss_pred hhhHHHHHHhhhhhhhhhHHHHHHH
Q 018377 268 AKDFEELKLKLNVMDSQLREAEHTI 292 (357)
Q Consensus 268 ~~d~~~l~~k~~~~~~~~~ea~~~i 292 (357)
.+|+.++..||+++|+|.+-+.+-|
T Consensus 14 ~~d~~~i~~rLD~iEeKVEftn~Ei 38 (77)
T PRK01026 14 PKDFKEIQKRLDEIEEKVEFTNAEI 38 (77)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3689999999999999988776543
No 158
>PF07334 IFP_35_N: Interferon-induced 35 kDa protein (IFP 35) N-terminus; InterPro: IPR009938 This entry represents the N terminus of interferon-induced 35 kDa protein (IFP 35) (approximately 80 residues long), which contains a leucine zipper motif in an alpha helical configuration []. This group of proteins also includes N-myc-interactor (Nmi), a homologous interferon-induced protein.
Probab=22.27 E-value=1.4e+02 Score=24.41 Aligned_cols=29 Identities=24% Similarity=0.297 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 018377 291 TIRKLMEARKLATREKDMLKHELEVLRRK 319 (357)
Q Consensus 291 ~i~kl~ee~~~~~~~~~~L~~El~~lr~~ 319 (357)
+|.-|+||...--++.+||.-||..++|.
T Consensus 1 li~ei~eEn~~Lk~eiqkle~ELq~~~~~ 29 (76)
T PF07334_consen 1 LIHEIQEENARLKEEIQKLEAELQQNKRE 29 (76)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 36678888888888888888888888775
No 159
>PF03904 DUF334: Domain of unknown function (DUF334); InterPro: IPR005602 This is a family of proteins found in Staphylococcus aureus plasmid with no characterised function.
Probab=22.16 E-value=3.3e+02 Score=26.62 Aligned_cols=45 Identities=9% Similarity=0.101 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHHHHHhhhccc--cccCCcchhhHHHHHHHHHHHHHh
Q 018377 303 TREKDMLKHELEVLRRKSNLR--RVQVGFPLLFVCMVALIGLVVGYL 347 (357)
Q Consensus 303 ~~~~~~L~~El~~lr~~~~~~--~~~~gf~l~fv~~v~llg~~lGyl 347 (357)
.++..++++|++-.-++.+.. +.+.-+..+|.-++|++++++-|.
T Consensus 119 ~~ei~k~r~e~~~ml~evK~~~E~y~k~~k~~~~gi~aml~Vf~LF~ 165 (230)
T PF03904_consen 119 QNEIKKVREENKSMLQEVKQSHEKYQKRQKSMYKGIGAMLFVFMLFA 165 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 344556677766444443321 134468899999999888876553
No 160
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=21.81 E-value=4.6e+02 Score=24.53 Aligned_cols=53 Identities=23% Similarity=0.332 Sum_probs=42.4
Q ss_pred hHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 018377 270 DFEELKLKLNVMDSQLREAEHTIRKLMEARKLATREKDMLKHELEVLRRKSNL 322 (357)
Q Consensus 270 d~~~l~~k~~~~~~~~~ea~~~i~kl~ee~~~~~~~~~~L~~El~~lr~~~~~ 322 (357)
+++.-|..|.+++.++.+...-|..|+-|...-.|...+|++|-+.|.++-..
T Consensus 80 ~y~kdK~~L~~~k~rl~~~ek~l~~Lk~e~evL~qr~~kle~ErdeL~~kf~~ 132 (201)
T PF13851_consen 80 NYEKDKQSLQNLKARLKELEKELKDLKWEHEVLEQRFEKLEQERDELYRKFES 132 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555677888888888899999999999999999999999988876543
No 161
>KOG3313 consensus Molecular chaperone Prefoldin, subunit 3 [Posttranslational modification, protein turnover, chaperones]
Probab=21.78 E-value=1.5e+02 Score=28.06 Aligned_cols=40 Identities=28% Similarity=0.459 Sum_probs=32.6
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 018377 280 VMDSQLREAEHTIRKLMEARKLATREKDMLKHELEVLRRKSNL 322 (357)
Q Consensus 280 ~~~~~~~ea~~~i~kl~ee~~~~~~~~~~L~~El~~lr~~~~~ 322 (357)
.+|--++||+++|.| -..++.+..+.+.++|++||-+.+.
T Consensus 121 MlEY~leEAeaLLkk---nl~sa~k~l~~~~~DldfLrdQvTT 160 (187)
T KOG3313|consen 121 MLEYDLEEAEALLKK---NLTSAVKSLDVLEEDLDFLRDQVTT 160 (187)
T ss_pred EEEecHHHHHHHHHh---hHHHHHHHHHHHHHHHHHHHhhcee
Confidence 356678999988654 5678999999999999999987653
No 162
>PF04888 SseC: Secretion system effector C (SseC) like family ; InterPro: IPR006972 SseC is a secreted protein that forms a complex together with SecB and SecD on the surface of Salmonella typhimurium. All these proteins are secreted by the type III secretion system []. Many mucosal pathogens use type III secretion systems for the injection of effector proteins into target cells. SecB, SseC and SecD are inserted into the target cell membrane. where they form a small pore or translocon [, ]. In addition to SseC, this family includes the bacterial secreted proteins PopB, PepB, YopB and EspD which are thought to be directly involved in pore formation, and type III secretion system translocon.; GO: 0009405 pathogenesis
Probab=21.78 E-value=3.9e+02 Score=25.95 Aligned_cols=57 Identities=18% Similarity=0.246 Sum_probs=32.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccCCcchhhHHHHHHHHHHHHH
Q 018377 287 EAEHTIRKLMEARKLATREKDMLKHELEVLRRKSNLRRVQVGFPLLFVCMVALIGLVVGY 346 (357)
Q Consensus 287 ea~~~i~kl~ee~~~~~~~~~~L~~El~~lr~~~~~~~~~~gf~l~fv~~v~llg~~lGy 346 (357)
-....+.++++.+. ++.++.++|++.--++...-+..+=|+=.|=.+++.++++.|-
T Consensus 19 ~~~~~~~~~~~~~~---~~~~e~~~~~~e~~~kaeeaqK~Gi~~kIf~wi~~avsvv~~~ 75 (306)
T PF04888_consen 19 SKKEQIERASEAQE---KKAEEKAEEIEEAQEKAEEAQKAGIFSKIFGWIGTAVSVVAGA 75 (306)
T ss_pred HHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHH
Confidence 33456666666655 6666667777655444332212344777776666666666665
No 163
>PF13815 Dzip-like_N: Iguana/Dzip1-like DAZ-interacting protein N-terminal
Probab=21.69 E-value=2.7e+02 Score=23.71 Aligned_cols=37 Identities=30% Similarity=0.392 Sum_probs=20.7
Q ss_pred hhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018377 277 KLNVMDSQLREAEHTIRKLMEARKLATREKDMLKHEL 313 (357)
Q Consensus 277 k~~~~~~~~~ea~~~i~kl~ee~~~~~~~~~~L~~El 313 (357)
.+..++.++.++..-+.+|+.+....-++..+|++|+
T Consensus 81 ~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~k~lk~E~ 117 (118)
T PF13815_consen 81 QLEQLEERLQELQQEIEKLKQKLKKQKEEIKKLKKES 117 (118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3445555555555555555555555555555565553
No 164
>COG5547 Small integral membrane protein [Function unknown]
Probab=21.68 E-value=75 Score=24.97 Aligned_cols=21 Identities=19% Similarity=0.513 Sum_probs=17.4
Q ss_pred chhhHHHHHHHHHHHHHhccc
Q 018377 330 PLLFVCMVALIGLVVGYLSHP 350 (357)
Q Consensus 330 ~l~fv~~v~llg~~lGyl~~~ 350 (357)
--++|++..+||+-.||+.++
T Consensus 31 Ktilviil~~lGv~iGl~~~r 51 (62)
T COG5547 31 KTILVIILILLGVYIGLYKKR 51 (62)
T ss_pred HHHHHHHHHHHHHHHHHHHHh
Confidence 356788899999999998874
No 165
>PHA03029 hypothetical protein; Provisional
Probab=21.53 E-value=46 Score=27.47 Aligned_cols=18 Identities=33% Similarity=0.739 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHhcccCCc
Q 018377 335 CMVALIGLVVGYLSHPQNR 353 (357)
Q Consensus 335 ~~v~llg~~lGyl~~~~~~ 353 (357)
++.+++|++-|||+. ||.
T Consensus 19 lila~igiiwg~lls-i~k 36 (92)
T PHA03029 19 LILAIIGIIWGFLLS-INK 36 (92)
T ss_pred HHHHHHHHHHHHHHH-HHH
Confidence 456889999999997 664
No 166
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=21.49 E-value=4.4e+02 Score=24.68 Aligned_cols=51 Identities=24% Similarity=0.302 Sum_probs=28.6
Q ss_pred HHhhhHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018377 266 KLAKDFEELKLKLNVMDSQLREAEHTIRKLMEARKLATREKDMLKHELEVL 316 (357)
Q Consensus 266 ~~~~d~~~l~~k~~~~~~~~~ea~~~i~kl~ee~~~~~~~~~~L~~El~~l 316 (357)
.+-+++.+|+.+....+....+...-..+|+|.-..+.+++..|+++|...
T Consensus 31 sLKeei~emkk~e~~~~k~m~ei~~eN~~L~epL~~a~~e~~eL~k~L~~y 81 (201)
T PF13851_consen 31 SLKEEIAEMKKKEERNEKLMAEISQENKRLSEPLKKAEEEVEELRKQLKNY 81 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 334455555555555555555555555566666666666666666666543
No 167
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=21.45 E-value=3.5e+02 Score=25.39 Aligned_cols=10 Identities=40% Similarity=0.946 Sum_probs=4.5
Q ss_pred HHHHHHHhcc
Q 018377 340 IGLVVGYLSH 349 (357)
Q Consensus 340 lg~~lGyl~~ 349 (357)
++..|||..|
T Consensus 197 isaALgyvah 206 (302)
T PF10186_consen 197 ISAALGYVAH 206 (302)
T ss_pred HHHHHHHHHH
Confidence 3444555443
No 168
>PF13234 rRNA_proc-arch: rRNA-processing arch domain; PDB: 4A4K_E 4A4Z_A 2XGJ_B 3L9O_A.
Probab=21.45 E-value=61 Score=30.94 Aligned_cols=51 Identities=24% Similarity=0.292 Sum_probs=30.0
Q ss_pred HHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 018377 271 FEELKLKLNVMDSQLREAEHTIRKLMEARKLATREKDMLKHELEVLRRKSN 321 (357)
Q Consensus 271 ~~~l~~k~~~~~~~~~ea~~~i~kl~ee~~~~~~~~~~L~~El~~lr~~~~ 321 (357)
|.++-.++..++.++....-.-..--++.-...+++.+|++|+..||++.+
T Consensus 216 ~~e~~~k~~~Le~rl~~~~~~~~~~~~~~~~~~~~k~~l~~~i~~Lk~~l~ 266 (268)
T PF13234_consen 216 FVELVKKIEALEKRLSSHPLHKCPDFEEHYALYHEKAELQEEIKALKRQLS 266 (268)
T ss_dssp HHHHHHHHHHHHHHHHHSCHCCSSSHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344444444445444442211112234666778889999999999998754
No 169
>PF07235 DUF1427: Protein of unknown function (DUF1427); InterPro: IPR009872 This family consists of several bacterial proteins of around 100 residues in length. The function of this family is unknown.
Probab=21.41 E-value=47 Score=27.99 Aligned_cols=15 Identities=27% Similarity=0.627 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHhcc
Q 018377 335 CMVALIGLVVGYLSH 349 (357)
Q Consensus 335 ~~v~llg~~lGyl~~ 349 (357)
.+|||+||++|+-+-
T Consensus 31 Al~GllGi~~Ge~~~ 45 (90)
T PF07235_consen 31 ALVGLLGILLGEQAI 45 (90)
T ss_pred HHHHHHHHhcccchh
Confidence 499999999998554
No 170
>PF04678 DUF607: Protein of unknown function, DUF607; InterPro: IPR006769 This entry represents the C-terminal domain of coiled-coil domain containing protein 109.
Probab=21.33 E-value=5.4e+02 Score=23.46 Aligned_cols=14 Identities=14% Similarity=0.275 Sum_probs=6.4
Q ss_pred HHHHHHHHHHHHHH
Q 018377 301 LATREKDMLKHELE 314 (357)
Q Consensus 301 ~~~~~~~~L~~El~ 314 (357)
..++..++.++|++
T Consensus 71 ~el~~le~~k~~id 84 (180)
T PF04678_consen 71 QELAPLEKIKQEID 84 (180)
T ss_pred HHHHHHHHHHHHHH
Confidence 33344444455544
No 171
>PF11668 Gp_UL130: HCMV glycoprotein pUL130; InterPro: IPR021038 This entry represents UL130 from Human cytomegalovirus, a glycoprotein secreted from infected cells that is incorporated into the virion envelope as a Golgi-matured form. The protein promotes endothelial cell infection through a producer cell modification of the virion [].
Probab=21.19 E-value=2.2e+02 Score=26.28 Aligned_cols=44 Identities=20% Similarity=0.552 Sum_probs=31.2
Q ss_pred eeEEeccCC-ceeEEEEEEEcC---CCCeEEEEEeeC------CCCcEEEeCCc
Q 018377 12 ELKFTFEVK-KQSTCVIQLGNK---SDQCVAFKVKTT------SPKKYCVRPNV 55 (357)
Q Consensus 12 EL~F~~e~~-kq~sc~LtLtN~---Sd~~VAFKVKTT------sPkkY~VRPn~ 55 (357)
-|+|....+ +-..|.++|.-- ..++|+|++|=+ .+.-||++||.
T Consensus 101 ~Lry~vkDG~~~~~C~m~v~TwA~~~~~~i~Fq~kiel~~A~~~~stiCthPnl 154 (156)
T PF11668_consen 101 LLRYRVKDGTRWEMCIMRVQTWAHTKSNYIQFQVKIELTHAYRQPSTICTHPNL 154 (156)
T ss_pred eEEEEeccCCceeeEEEEeeehhhhhcccEEEEEEEEEeeccCCccceeccccc
Confidence 367766544 667899998763 345699999742 36678999984
No 172
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=21.16 E-value=3.5e+02 Score=27.33 Aligned_cols=51 Identities=24% Similarity=0.280 Sum_probs=29.1
Q ss_pred HHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccc
Q 018377 273 ELKLKLNVMDSQLREAEHTIRKLMEARKLATREKDMLKHELEVLRRKSNLR 323 (357)
Q Consensus 273 ~l~~k~~~~~~~~~ea~~~i~kl~ee~~~~~~~~~~L~~El~~lr~~~~~~ 323 (357)
+|..+...+.++..+-..-|..|+++|+-.....+.|.++..-++++.+-.
T Consensus 52 E~~e~~~elr~~rdeineev~elK~kR~ein~kl~eL~~~~~~l~e~~~~~ 102 (294)
T COG1340 52 ELREKAQELREERDEINEEVQELKEKRDEINAKLQELRKEYRELKEKRNEF 102 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 333344444444555555566666666666666666666666666665543
No 173
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=21.04 E-value=2.9e+02 Score=31.02 Aligned_cols=56 Identities=21% Similarity=0.354 Sum_probs=44.5
Q ss_pred HhhhHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 018377 267 LAKDFEELKLKLNVMDSQLREAEHTIRKLMEARKLATREKDMLKHELEVLRRKSNL 322 (357)
Q Consensus 267 ~~~d~~~l~~k~~~~~~~~~ea~~~i~kl~ee~~~~~~~~~~L~~El~~lr~~~~~ 322 (357)
+.+-+..|+.++...+.++.+...-+..+..|..--.+.+..|+.|++-||++-.+
T Consensus 564 ~~~~~~~Lq~~~ek~~~~le~i~~~~~e~~~ele~~~~k~~rleEE~e~L~~kle~ 619 (698)
T KOG0978|consen 564 AKQSLEDLQIELEKSEAKLEQIQEQYAELELELEIEKFKRKRLEEELERLKRKLER 619 (698)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445566777777778888888888888888888888899999999999988654
No 174
>PF00553 CBM_2: Cellulose binding domain; InterPro: IPR001919 The microbial degradation of cellulose and xylans requires several types of enzyme such as endoglucanases (3.2.1.4 from EC), cellobiohydrolases (3.2.1.91 from EC) (exoglucanases), or xylanases (3.2.1.8 from EC) []. Structurally, cellulases and xylanases generally consist of a catalytic domain joined to a cellulose-binding domain (CBD) by a short linker sequence rich in proline and/or hydroxy-amino acids. The CBD domain is found either at the N-terminal or at the C-terminal extremity of these enzymes. As it is shown in the following schematic representation, there are two conserved cysteines in this CBD domain - one at each extremity of the domain - which have been shown [] to be involved in a disulphide bond. There are also four conserved tryptophan, two are involved in cellulose binding. The CBD of a number of bacterial cellulases has been shown to consist of about 105 amino acid residues [, ]. +-------------------------------------------------+ | | xCxxxxWxxxxxNxxxWxxxxxxxWxxxxxxxxWNxxxxxGxxxxxxxxxxCx 'C': conserved cysteine involved in a disulphide bond. ; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0030246 carbohydrate binding, 0005975 carbohydrate metabolic process; PDB: 2CZN_A 2CWR_A 1HEH_C 1HEJ_C 3NDZ_E 3NDY_E 2XBD_A 1E5C_A 1XBD_A 1E5B_A ....
Probab=21.01 E-value=2.2e+02 Score=23.30 Aligned_cols=51 Identities=14% Similarity=0.161 Sum_probs=33.4
Q ss_pred eEEEEEEEcCCCCeE-----EEEEe-------------eCCCCcEEEeCC--cceeCCCCeEEEEEEeccC
Q 018377 23 STCVIQLGNKSDQCV-----AFKVK-------------TTSPKKYCVRPN--VSIIKPKAISDFTVTMQAQ 73 (357)
Q Consensus 23 ~sc~LtLtN~Sd~~V-----AFKVK-------------TTsPkkY~VRPn--~GvI~P~ss~~V~VTmqa~ 73 (357)
-...|+|+|.++..+ .|.+. +.+-..|.|+|. .+.|.||+++.|-+.....
T Consensus 15 f~~~v~v~N~~~~~i~~W~v~~~~~~~~~i~~~Wna~~s~~g~~~~v~~~~wn~~i~~G~s~~~Gf~~~~~ 85 (101)
T PF00553_consen 15 FQGEVTVTNNGSSPINGWTVTFTFPSGQTITSSWNATVSQSGNTVTVTNPSWNGTIAPGGSVTFGFQASGS 85 (101)
T ss_dssp EEEEEEEEESSSSTEESEEEEEEESTTEEEEEEESCEEEEETTEEEEEESSTCSEEEESEEEEEEEEEEES
T ss_pred eEEEEEEEECCCCccCCEEEEEEeCCCCEEeeeeccEEEecCCEEEEEcCCcCcccCCCCeEEEEEEEeCC
Confidence 345788888876653 33322 112357899876 4899999998877765543
No 175
>PF10151 DUF2359: Uncharacterised conserved protein (DUF2359); InterPro: IPR019308 This is a 450 amino acid region of a family of proteins conserved from insects to humans. The function is not known.
Probab=20.99 E-value=3.7e+02 Score=28.78 Aligned_cols=79 Identities=20% Similarity=0.237 Sum_probs=43.0
Q ss_pred HHHHhhhHHHHHHhhhhhhhhhHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHhhhccccccCCcchhhHHH
Q 018377 264 ELKLAKDFEELKLKLNVMDSQLREAEHTIRKLMEAR-------KLATREKDMLKHELEVLRRKSNLRRVQVGFPLLFVCM 336 (357)
Q Consensus 264 ~~~~~~d~~~l~~k~~~~~~~~~ea~~~i~kl~ee~-------~~~~~~~~~L~~El~~lr~~~~~~~~~~gf~l~fv~~ 336 (357)
..++.++-+++-.|++. .+.|+-.-+...+||- ...+.+-|+.-|. ++.|. + +.||+...+++
T Consensus 202 L~~l~~~W~~~s~KL~k---~l~~Tl~sfr~~Nee~~~k~~~~~~~lk~~dk~Ck~--il~K~---~--~~~c~w~~l~l 271 (469)
T PF10151_consen 202 LKHLDDEWKESSKKLSK---SLKETLKSFRLKNEELLKKGKAKDESLKECDKACKV--ILGKM---S--GSSCPWTRLLL 271 (469)
T ss_pred HHHHHHhHHhhhHHHHH---HHHHHHHHHHHhHHHHHhccccchHHHHHHHHHHHH--HHHhh---c--CCCCchHHHHH
Confidence 45666666666666653 5667666666666654 1344555666664 34441 1 34677655433
Q ss_pred HHHHHHHHHHhcccCCc
Q 018377 337 VALIGLVVGYLSHPQNR 353 (357)
Q Consensus 337 v~llg~~lGyl~~~~~~ 353 (357)
-++.++.|++.+-+++
T Consensus 272 -lllvliaG~l~yDv~~ 287 (469)
T PF10151_consen 272 -LLLVLIAGFLAYDVRS 287 (469)
T ss_pred -HHHHHHHHHHHHhhhc
Confidence 3334444666665543
No 176
>PF09753 Use1: Membrane fusion protein Use1; InterPro: IPR019150 This entry represents a family of proteins, approximately 300 residues in length, involved in vesicle transport. They have a single C-terminal transmembrane domain and a SNARE [soluble NSF (N-ethylmaleimide-sensitive fusion protein) attachment protein receptor] domain of approximately 60 residues. The SNARE domains are essential for membrane fusion and are conserved from yeasts to humans. Use1 is one of the three protein subunits that make up the SNARE complex and it is specifically required for Golgi-endoplasmic reticulum retrograde transport [].
Probab=20.99 E-value=6.7e+02 Score=23.86 Aligned_cols=17 Identities=29% Similarity=0.280 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHhhhcc
Q 018377 306 KDMLKHELEVLRRKSNL 322 (357)
Q Consensus 306 ~~~L~~El~~lr~~~~~ 322 (357)
..+|+.|-.-|....++
T Consensus 208 ~~~l~~~~~rl~~~~~~ 224 (251)
T PF09753_consen 208 LSSLKRESKRLKEHSSK 224 (251)
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 45667776666665433
No 177
>TIGR01149 mtrG N5-methyltetrahydromethanopterin:coenzyme M methyltransferase subunit G. coenzyme M methyltransferase subunit G in methanogenic archaea. This methyltranfersae is membrane-associated enzyme complex that uses methyl-transfer reaction to drive sodium-ion pump. Archaea have evolved energy-yielding pathways marked by one-carbon biochemistry featuring novel cofactors and enzymes. This transferase is involved in the transfer of 'methyl' group from N5-methyltetrahydromethanopterin to coenzyme M. In an accompanying reaction, methane is produced by two-electron reduction of the methyl moiety in methyl-coenzyme M by another enzyme methyl-coenzyme M reductase.
Probab=20.98 E-value=1.2e+02 Score=24.48 Aligned_cols=24 Identities=13% Similarity=0.349 Sum_probs=19.5
Q ss_pred hhhHHHHHHhhhhhhhhhHHHHHH
Q 018377 268 AKDFEELKLKLNVMDSQLREAEHT 291 (357)
Q Consensus 268 ~~d~~~l~~k~~~~~~~~~ea~~~ 291 (357)
.+|+.++..||+++|+|.+-..+-
T Consensus 11 ~~d~~~i~~rLd~iEeKVEf~~~E 34 (70)
T TIGR01149 11 PDEFNEVMKRLDEIEEKVEFVNGE 34 (70)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 368899999999999998777653
No 178
>PF13863 DUF4200: Domain of unknown function (DUF4200)
Probab=20.97 E-value=4.9e+02 Score=21.63 Aligned_cols=56 Identities=21% Similarity=0.210 Sum_probs=36.9
Q ss_pred HhhhHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 018377 267 LAKDFEELKLKLNVMDSQLREAEHTIRKLMEARKLATREKDMLKHELEVLRRKSNL 322 (357)
Q Consensus 267 ~~~d~~~l~~k~~~~~~~~~ea~~~i~kl~ee~~~~~~~~~~L~~El~~lr~~~~~ 322 (357)
+-.++.....=+..-+.+...|...+..=+..+..-..+..+|+.++..|+.....
T Consensus 44 l~~~~~~f~~flken~~k~~rA~k~a~~e~k~~~~k~~ei~~l~~~l~~l~~~~~k 99 (126)
T PF13863_consen 44 LEEDVIKFDKFLKENEAKRERAEKRAEEEKKKKEEKEAEIKKLKAELEELKSEISK 99 (126)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444556666777777666666666666777788888888888866543
No 179
>KOG4005 consensus Transcription factor XBP-1 [Transcription]
Probab=20.89 E-value=2.9e+02 Score=27.51 Aligned_cols=35 Identities=31% Similarity=0.449 Sum_probs=21.1
Q ss_pred hHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHhh
Q 018377 285 LREAEHTIRKLMEARK--------------LATREKDMLKHELEVLRRK 319 (357)
Q Consensus 285 ~~ea~~~i~kl~ee~~--------------~~~~~~~~L~~El~~lr~~ 319 (357)
.+|-+-.|.-|+||.+ +-+-++++|.+||+++|..
T Consensus 92 m~eme~~i~dL~een~~L~~en~~Lr~~n~~L~~~n~el~~~le~~~~~ 140 (292)
T KOG4005|consen 92 MEEMEYEIKDLTEENEILQNENDSLRAINESLLAKNHELDSELELLRQE 140 (292)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 4455555666665544 3344566777888877754
No 180
>PF14283 DUF4366: Domain of unknown function (DUF4366)
Probab=20.83 E-value=28 Score=33.25 Aligned_cols=24 Identities=38% Similarity=0.430 Sum_probs=18.8
Q ss_pred ccCCcchhhHHHHHHHHHHHHHhcc
Q 018377 325 VQVGFPLLFVCMVALIGLVVGYLSH 349 (357)
Q Consensus 325 ~~~gf~l~fv~~v~llg~~lGyl~~ 349 (357)
+..|+ ++++++|+|+|.-.||++|
T Consensus 158 s~~g~-ll~lllv~l~gGGa~yYfK 181 (218)
T PF14283_consen 158 SGMGS-LLLLLLVALIGGGAYYYFK 181 (218)
T ss_pred cchHH-HHHHHHHHHhhcceEEEEE
Confidence 34455 7788888899998889887
No 181
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=20.83 E-value=2.5e+02 Score=30.61 Aligned_cols=48 Identities=19% Similarity=0.354 Sum_probs=36.6
Q ss_pred HHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 018377 271 FEELKLKLNVMDSQLREAEHTIRKLMEARKLATREKDMLKHELEVLRR 318 (357)
Q Consensus 271 ~~~l~~k~~~~~~~~~ea~~~i~kl~ee~~~~~~~~~~L~~El~~lr~ 318 (357)
.-+.-..+++++.++.-+.+-|.+|.+|...--+|+..|+.+|..+|+
T Consensus 143 ~~~~~~~l~~leAe~~~~krr~~~le~e~~~Lk~en~rl~~~l~~~r~ 190 (546)
T KOG0977|consen 143 LDDYLSRLSELEAEINTLKRRIKALEDELKRLKAENSRLREELARARK 190 (546)
T ss_pred HHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHH
Confidence 333345677777788888888888888888888888888888887775
No 182
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=20.54 E-value=2.4e+02 Score=29.66 Aligned_cols=47 Identities=15% Similarity=0.121 Sum_probs=32.5
Q ss_pred HHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 018377 272 EELKLKLNVMDSQLREAEHTIRKLMEARKLATREKDMLKHELEVLRR 318 (357)
Q Consensus 272 ~~l~~k~~~~~~~~~ea~~~i~kl~ee~~~~~~~~~~L~~El~~lr~ 318 (357)
.++..-+.-...++.++...+..|..+.+..-++.++|++||..|..
T Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~l~~ 173 (525)
T TIGR02231 127 KEWFQAFDFNGSEIERLLTEDREAERRIRELEKQLSELQNELNALLT 173 (525)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 33433445556667777777777777777777888888888877764
No 183
>PRK09413 IS2 repressor TnpA; Reviewed
Probab=20.29 E-value=2.5e+02 Score=23.79 Aligned_cols=33 Identities=30% Similarity=0.314 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 018377 288 AEHTIRKLMEARKLATREKDMLKHELEVLRRKS 320 (357)
Q Consensus 288 a~~~i~kl~ee~~~~~~~~~~L~~El~~lr~~~ 320 (357)
.+.-|.+|..+-.....|++-|++-+++.|++.
T Consensus 76 ~~~ei~~L~~el~~L~~E~diLKKa~~~~~~~~ 108 (121)
T PRK09413 76 AMKQIKELQRLLGKKTMENELLKEAVEYGRAKK 108 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhh
Confidence 344567777777777777888888888887654
No 184
>PF08702 Fib_alpha: Fibrinogen alpha/beta chain family; InterPro: IPR012290 Fibrinogen plays key roles in both blood clotting and platelet aggregation. During blood clot formation, the conversion of soluble fibrinogen to insoluble fibrin is triggered by thrombin, resulting in the polymerisation of fibrin, which forms a soft clot; this is then converted to a hard clot by factor XIIIA, which cross-links fibrin molecules. Platelet aggregation involves the binding of the platelet protein receptor integrin alpha(IIb)-beta(3) to the C-terminal D domain of fibrinogen []. In addition to platelet aggregation, platelet-fibrinogen interaction mediates both adhesion and fibrin clot retraction. Fibrinogen occurs as a dimer, where each monomer is composed of three non-identical chains, alpha, beta and gamma, linked together by several disulphide bonds []. The N-terminals of all six chains come together to form the centre of the molecule (E domain), from which the monomers extend in opposite directions as coiled coils, followed by C-terminal globular domains (D domains). Therefore, the domain composition is: D-coil-E-coil-D. At each end, the C-terminal of the alpha chain extends beyond the D domain as a protuberance that is important for cross-linking the molecule. During clot formation, the N-terminal fragments of the alpha and beta chains (within the E domain) in fibrinogen are cleaved by thrombin, releasing fibrinopeptides A and B, respectively, and producing fibrin. This cleavage results in the exposure of four binding sites on the E domain, each of which can bind to a D domain from different fibrin molecules. The binding of fibrin molecules produces a polymer consisting of a lattice network of fibrins that form a long, branching, flexible fibre [, ]. Fibrin fibres interact with platelets to increase the size of the clot, as well as with several different proteins and cells, thereby promoting the inflammatory response and concentrating the cells required for wound repair at the site of damage. This entry represents the coiled-coil domain and part of the N-terminal E domain found in all three fibrinogen polypeptides, namely the alpha, beta and gamma chains. More information about these proteins can be found at Protein of the Month: Fibrinogen [].; GO: 0005102 receptor binding, 0030674 protein binding, bridging, 0007165 signal transduction, 0030168 platelet activation, 0051258 protein polymerization, 0005577 fibrinogen complex; PDB: 1LWU_D 1N73_D 1M1J_B 1JY2_R 1JY3_R 1RF0_A 2H43_D 1RE4_D 2XNY_D 2HPC_D ....
Probab=20.26 E-value=3.6e+02 Score=24.15 Aligned_cols=41 Identities=20% Similarity=0.286 Sum_probs=35.1
Q ss_pred HHHHHhhhHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHH
Q 018377 263 LELKLAKDFEELKLKLNVMDSQLREAEHTIRKLMEARKLAT 303 (357)
Q Consensus 263 ~~~~~~~d~~~l~~k~~~~~~~~~ea~~~i~kl~ee~~~~~ 303 (357)
++..+.+|+++|+..|...+.+..+|...|..+++--+.+.
T Consensus 30 ~~~~v~~~i~~L~~~L~~~~n~t~~~~~~v~~i~~~~~~~q 70 (146)
T PF08702_consen 30 YERDVDKDIQELENLLDQISNSTSEAFEYVKNIKDSLRPRQ 70 (146)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HccchHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhccc
Confidence 56788999999999999999999999999988887755443
No 185
>TIGR02209 ftsL_broad cell division protein FtsL. This model represents FtsL, both forms similar to that in E. coli and similar to that in B. subtilis. FtsL is one of the later proteins active in cell division septum formation. FtsL is small, low in complexity, and highly divergent. The scope of this model is broader than that of the Pfam model pfam04999.3 for FtsL, as this one includes FtsL from Bacillus subtilis and related species.
Probab=20.23 E-value=2.8e+02 Score=21.57 Aligned_cols=32 Identities=22% Similarity=0.211 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018377 286 REAEHTIRKLMEARKLATREKDMLKHELEVLR 317 (357)
Q Consensus 286 ~ea~~~i~kl~ee~~~~~~~~~~L~~El~~lr 317 (357)
.....-|.++..+....-.+++.|+.|...|.
T Consensus 27 ~~~~~~~~~~~~~~~~l~~en~~L~~ei~~l~ 58 (85)
T TIGR02209 27 RQLNNELQKLQLEIDKLQKEWRDLQLEVAELS 58 (85)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 34445556666666666667777777776554
No 186
>PF02344 Myc-LZ: Myc leucine zipper domain; InterPro: IPR003327 This family consists of the leucine zipper dimerisation domain found in both cellular c-Myc proto-oncogenes and viral v-Myc oncogenes. Dimerisation via the leucine zipper motif with other basic helix-loop-helix-leucine zipper (b/HLH/lz) proteins is required for efficient DNA binding []. The Myc-Max dimer is a transactivating complex activating expression of growth related genes promoting cell proliferation. The dimerisation is facilitated via interdigitating leucine residues every 7th position of the alpha helix. Like charge repulsion of adjacent residues in this region preturbs the formation of homodimers with heterodimers being promoted by opposing charge attractions. It has been demonstrated that in transgenic mice the balance between oncogene-induced proliferation and apoptosis in a given tissue can be a critical determinant in the initiation and maintenance of the tumor [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 1NKP_D 1A93_A 2A93_A.
Probab=20.17 E-value=2.4e+02 Score=19.61 Aligned_cols=26 Identities=38% Similarity=0.658 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Q 018377 293 RKLMEARKLATREKDMLKHELEVLRR 318 (357)
Q Consensus 293 ~kl~ee~~~~~~~~~~L~~El~~lr~ 318 (357)
.||.-|+..--+.+.+|++-|+.||.
T Consensus 4 qkL~sekeqLrrr~eqLK~kLeqlrn 29 (32)
T PF02344_consen 4 QKLISEKEQLRRRREQLKHKLEQLRN 29 (32)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 35555666666777888888888884
No 187
>COG3086 RseC Positive regulator of sigma E activity [Signal transduction mechanisms]
Probab=20.07 E-value=85 Score=28.75 Aligned_cols=23 Identities=35% Similarity=0.557 Sum_probs=20.5
Q ss_pred cCCcchhhHHHHHHHHHHHHHhc
Q 018377 326 QVGFPLLFVCMVALIGLVVGYLS 348 (357)
Q Consensus 326 ~~gf~l~fv~~v~llg~~lGyl~ 348 (357)
.-||.=+++++.+++|+.+||++
T Consensus 98 ~L~~~e~~~~~~~~lg~~l~fl~ 120 (150)
T COG3086 98 YLFFSELIVIFGAFLGLALGFLL 120 (150)
T ss_pred HHhhhhHHHHHHHHHHHHHHHHH
Confidence 35788899999999999999987
No 188
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=20.06 E-value=9.3e+02 Score=24.81 Aligned_cols=15 Identities=33% Similarity=0.306 Sum_probs=7.1
Q ss_pred hhHHHHHHHHHHHHH
Q 018377 332 LFVCMVALIGLVVGY 346 (357)
Q Consensus 332 ~fv~~v~llg~~lGy 346 (357)
+++++-+++|+++|.
T Consensus 415 ~~l~~g~~~Gl~lg~ 429 (498)
T TIGR03007 415 LLMLAGLLGGLGAGI 429 (498)
T ss_pred HHHHHHHHHHHHHHH
Confidence 444444445555443
No 189
>PF03302 VSP: Giardia variant-specific surface protein; InterPro: IPR005127 During infection, the intestinal protozoan parasite Giardia lamblia virus undergoes continuous antigenic variation which is determined by diversification of the parasite's major surface antigen, named VSP (variant surface protein).
Probab=20.03 E-value=62 Score=33.27 Aligned_cols=24 Identities=21% Similarity=0.463 Sum_probs=18.2
Q ss_pred CCcchhhHHHHH-HHHHHHHHhccc
Q 018377 327 VGFPLLFVCMVA-LIGLVVGYLSHP 350 (357)
Q Consensus 327 ~gf~l~fv~~v~-llg~~lGyl~~~ 350 (357)
.|++..-|++|| |+|+|..+||-+
T Consensus 370 aGIsvavvvvVgglvGfLcWwf~cr 394 (397)
T PF03302_consen 370 AGISVAVVVVVGGLVGFLCWWFICR 394 (397)
T ss_pred eeeeehhHHHHHHHHHHHhhheeec
Confidence 588888776665 888888888753
No 190
>TIGR03510 XapX XapX domain. This model describes an uncharacterized small, hydrophobic protein of about 50 amino acids, found between the xapB and xapR genes of the E. coli xanthosine utilization system, and homologous regions in other small proteins, such as the N-terminal region of DUF1427 (Pfam model pfam07235). We name this domain XapX, as it comprises the full length of the protein encoded between the genes for the well-studied XapB and XapR proteins.
Probab=20.02 E-value=93 Score=23.42 Aligned_cols=20 Identities=25% Similarity=0.586 Sum_probs=15.6
Q ss_pred hhhHHHHHHHHHHHHHhccc
Q 018377 331 LLFVCMVALIGLVVGYLSHP 350 (357)
Q Consensus 331 l~fv~~v~llg~~lGyl~~~ 350 (357)
=.+.-++|++|+.+||.+-+
T Consensus 27 P~laGl~gi~gm~~G~~~~~ 46 (49)
T TIGR03510 27 PVLAGLVGLLGMLLGEQAVP 46 (49)
T ss_pred chHHHHHHHHHHHHhHHHHH
Confidence 34566899999999998643
No 191
>PF03961 DUF342: Protein of unknown function (DUF342); InterPro: IPR005646 This family of bacterial proteins has no known function. The proteins are in the region of 500-600 amino acid residues in length.
Probab=20.02 E-value=3.6e+02 Score=27.87 Aligned_cols=30 Identities=33% Similarity=0.447 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 018377 290 HTIRKLMEARKLATREKDMLKHELEVLRRK 319 (357)
Q Consensus 290 ~~i~kl~ee~~~~~~~~~~L~~El~~lr~~ 319 (357)
..+.+|.+.+....++..+|+.++..|+..
T Consensus 375 ~~~~~l~~~~~~l~~~~~~l~~~~~~l~~~ 404 (451)
T PF03961_consen 375 EQLKKLKEKKKELKEELKELKEELKELKEE 404 (451)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555555555666665555533
Done!