Query 018377
Match_columns 357
No_of_seqs 214 out of 662
Neff 4.4
Searched_HMMs 29240
Date Mon Mar 25 14:18:43 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018377.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/018377hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1wic_A Hypothetical protein ri 100.0 4.5E-35 1.5E-39 257.0 13.6 129 3-136 16-147 (152)
2 2cri_A Vesicle-associated memb 100.0 2.6E-33 9E-38 243.7 18.1 125 4-132 13-138 (147)
3 1z9l_A Vesicle-associated memb 100.0 8.5E-33 2.9E-37 234.5 17.1 118 4-125 9-127 (128)
4 1msp_A MSP, major sperm protei 100.0 1E-30 3.6E-35 222.5 15.9 118 4-125 7-125 (126)
5 1row_A SSP-19, MSP-domain prot 99.9 2.1E-26 7.1E-31 192.7 14.1 104 6-123 3-106 (109)
6 1m1s_A WR4; structural genomic 99.9 6.4E-26 2.2E-30 192.2 15.3 106 4-123 9-114 (116)
7 2ys4_A Hydrocephalus-inducing 98.1 1.3E-05 4.3E-10 66.4 9.9 75 10-90 29-104 (122)
8 3qbt_B Inositol polyphosphate 97.8 0.00015 5.2E-09 62.1 10.1 69 4-72 25-100 (140)
9 2e6j_A Hydin protein; PAPD, st 97.7 0.00011 3.8E-09 58.9 7.7 70 4-73 8-81 (112)
10 3qis_A Inositol polyphosphate 97.2 0.0016 5.6E-08 63.6 10.1 71 4-74 28-105 (366)
11 2qsv_A Uncharacterized protein 95.3 0.058 2E-06 48.6 8.5 69 5-74 2-71 (220)
12 2qsv_A Uncharacterized protein 94.4 0.16 5.3E-06 45.8 8.9 67 5-73 119-186 (220)
13 3q48_A Chaperone CUPB2; IG fol 89.4 5 0.00017 37.5 12.7 108 6-127 30-147 (257)
14 2co7_B SAFB chaperone, putativ 86.4 4.7 0.00016 36.6 10.3 114 6-127 14-133 (221)
15 2xg5_A PAPD, chaperone protein 85.2 7.3 0.00025 35.3 10.9 108 6-127 2-118 (218)
16 3efg_A Protein SLYX homolog; x 83.1 3.3 0.00011 32.4 6.6 50 274-323 12-61 (78)
17 1klf_A FIMC chaperone, chapero 82.8 8.6 0.00029 34.5 10.2 110 6-127 2-118 (205)
18 4djm_A DRAB; chaperone, PILI; 80.3 9.6 0.00033 35.2 9.8 84 6-95 24-112 (239)
19 1l4i_A SFAE protein; periplasm 79.2 14 0.00048 33.1 10.3 111 6-128 2-119 (206)
20 2r39_A FIXG-related protein; s 78.1 9.4 0.00032 30.9 8.1 53 22-74 32-85 (118)
21 4ay0_A Chaperone protein CAF1M 77.2 39 0.0013 30.6 12.7 108 6-127 14-128 (218)
22 3hnw_A Uncharacterized protein 76.9 4.8 0.00016 34.5 6.2 37 266-302 65-101 (138)
23 3i00_A HIP-I, huntingtin-inter 71.7 16 0.00055 30.7 8.1 58 260-320 13-84 (120)
24 3hnw_A Uncharacterized protein 71.4 14 0.00048 31.6 7.8 47 269-315 89-135 (138)
25 3gfu_C Chaperone protein FAEE; 70.4 29 0.001 31.7 10.2 106 6-127 2-114 (224)
26 1nlw_A MAD protein, MAX dimeri 67.3 11 0.00038 29.3 5.7 37 284-320 41-77 (80)
27 3rfr_A PMOB; membrane, oxidore 66.9 26 0.00087 35.3 9.5 65 6-73 284-369 (419)
28 1yew_A Particulate methane mon 63.8 38 0.0013 33.7 10.0 67 5-73 249-337 (382)
29 2oqq_A Transcription factor HY 62.9 14 0.00046 26.1 4.8 34 280-313 7-40 (42)
30 3m9b_A Proteasome-associated A 59.6 8.4 0.00029 36.4 4.4 41 278-318 56-96 (251)
31 1gd2_E Transcription factor PA 57.8 12 0.00041 28.7 4.2 36 279-314 32-67 (70)
32 2eqb_B RAB guanine nucleotide 57.8 26 0.00088 28.7 6.4 45 273-317 9-60 (97)
33 2jee_A YIIU; FTSZ, septum, coi 53.0 32 0.0011 27.2 6.1 18 278-295 8-25 (81)
34 1lwu_C Fibrinogen gamma chain; 49.6 36 0.0012 33.0 7.1 54 267-320 3-56 (323)
35 2qyw_A Vesicle transport throu 49.1 52 0.0018 26.4 7.0 48 272-319 45-100 (102)
36 1nkp_B MAX protein, MYC proto- 46.2 42 0.0014 25.6 5.7 38 285-322 42-79 (83)
37 3onj_A T-snare VTI1; helix, HA 44.2 57 0.002 25.8 6.4 48 272-319 30-88 (97)
38 3nmd_A CGMP dependent protein 44.2 56 0.0019 25.3 6.1 40 278-317 28-67 (72)
39 1l8d_A DNA double-strand break 43.4 39 0.0013 26.8 5.4 42 277-318 4-45 (112)
40 2jee_A YIIU; FTSZ, septum, coi 42.7 1.1E+02 0.0039 24.1 7.7 49 270-318 21-69 (81)
41 3t97_C Nuclear pore glycoprote 42.2 61 0.0021 24.4 5.9 40 280-319 2-41 (64)
42 3vkg_A Dynein heavy chain, cyt 41.6 50 0.0017 41.1 8.0 54 268-321 2020-2073(3245)
43 4emc_A Monopolin complex subun 40.5 26 0.00088 31.8 4.2 38 281-318 11-48 (190)
44 2w6a_A ARF GTPase-activating p 40.2 90 0.0031 23.6 6.4 47 271-317 15-61 (63)
45 4h22_A Leucine-rich repeat fli 39.4 1.6E+02 0.0055 24.3 8.4 57 267-323 28-84 (103)
46 1wt6_A Myotonin-protein kinase 39.2 71 0.0024 25.3 6.0 34 280-320 42-75 (81)
47 1nkp_A C-MYC, MYC proto-oncoge 39.2 60 0.0021 25.4 5.7 36 285-320 47-82 (88)
48 3m91_A Proteasome-associated A 37.8 82 0.0028 22.7 5.8 37 280-316 13-49 (51)
49 2fxo_A Myosin heavy chain, car 37.4 1.2E+02 0.0041 25.1 7.7 44 273-316 80-123 (129)
50 3htk_A Structural maintenance 35.9 1.1E+02 0.0039 21.6 6.4 44 269-312 12-55 (60)
51 3oja_B Anopheles plasmodium-re 35.6 43 0.0015 33.3 5.4 10 308-317 562-571 (597)
52 2fxo_A Myosin heavy chain, car 34.9 1.1E+02 0.0039 25.2 7.1 47 274-320 74-120 (129)
53 1vcs_A Vesicle transport throu 34.5 81 0.0028 25.2 5.9 28 273-300 35-62 (102)
54 1ic2_A Tropomyosin alpha chain 34.4 1.2E+02 0.0041 23.1 6.6 48 269-316 13-60 (81)
55 3s4r_A Vimentin; alpha-helix, 34.2 83 0.0029 24.9 5.9 38 282-319 55-92 (93)
56 4etp_A Kinesin-like protein KA 33.7 1E+02 0.0035 30.3 7.7 50 268-317 9-58 (403)
57 1ic2_A Tropomyosin alpha chain 33.7 1.6E+02 0.0054 22.4 7.7 43 277-319 7-49 (81)
58 3ol1_A Vimentin; structural ge 32.7 2E+02 0.0068 23.5 8.2 57 262-318 41-104 (119)
59 3hhm_B NISH2 P85alpha; PI3KCA, 32.5 1.3E+02 0.0043 29.5 8.0 62 259-320 195-256 (373)
60 1s1c_X RHO-associated, coiled- 32.3 1.4E+02 0.0047 23.1 6.5 47 267-313 4-52 (71)
61 3q0x_A Centriole protein; cent 32.1 85 0.0029 29.0 6.4 45 276-320 171-215 (228)
62 1ykh_B RNA polymerase II holoe 31.6 1.4E+02 0.0047 25.1 7.1 53 268-320 70-122 (132)
63 1m1j_C Fibrinogen gamma chain; 30.8 1.1E+02 0.0037 30.6 7.3 36 263-298 32-67 (409)
64 3l4q_C Phosphatidylinositol 3- 30.5 1E+02 0.0035 27.3 6.4 63 259-321 86-148 (170)
65 1uix_A RHO-associated kinase; 29.9 1.7E+02 0.0058 22.6 6.7 47 267-313 2-52 (71)
66 1gd2_E Transcription factor PA 29.5 81 0.0028 24.1 4.8 38 282-319 28-65 (70)
67 1yke_B RNA polymerase II holoe 29.4 1.4E+02 0.0049 25.7 7.0 53 268-320 70-122 (151)
68 1m1j_B Fibrinogen beta chain; 29.4 1.4E+02 0.0049 30.2 8.0 33 263-295 94-126 (464)
69 3na7_A HP0958; flagellar bioge 28.9 1.8E+02 0.0062 26.4 8.0 24 267-290 95-118 (256)
70 3hn9_A Lamin-B1; structural ge 28.9 66 0.0023 26.7 4.6 40 26-66 26-71 (123)
71 3ghg_C Fibrinogen gamma chain; 28.5 1.5E+02 0.005 29.8 7.8 36 263-298 32-67 (411)
72 3hd7_B Syntaxin-1A; membrane p 27.9 1.9E+02 0.0064 23.2 7.1 32 285-316 44-75 (109)
73 3swk_A Vimentin; cytoskeleton, 27.1 1.5E+02 0.0051 23.1 6.2 53 266-318 25-84 (86)
74 2dfs_A Myosin-5A; myosin-V, in 26.6 1.2E+02 0.004 33.8 7.3 26 277-302 985-1010(1080)
75 3u59_A Tropomyosin beta chain; 26.0 1.8E+02 0.0063 22.9 6.6 37 278-314 25-61 (101)
76 2wg5_A General control protein 25.4 69 0.0024 25.9 4.1 26 293-318 10-35 (109)
77 3na7_A HP0958; flagellar bioge 23.9 2.3E+02 0.008 25.6 7.8 40 278-317 34-73 (256)
78 3u1c_A Tropomyosin alpha-1 cha 23.7 2.1E+02 0.0073 22.7 6.6 39 277-315 24-62 (101)
79 4fm3_A Uncharacterized hypothe 23.4 1.2E+02 0.0041 24.7 5.0 36 278-313 59-94 (98)
80 3oja_B Anopheles plasmodium-re 22.3 2.3E+02 0.0077 28.0 7.9 17 282-298 550-566 (597)
81 2wt7_B Transcription factor MA 22.3 1.3E+02 0.0044 24.1 5.0 35 280-314 52-86 (90)
82 3ghg_B Fibrinogen beta chain; 22.1 1.5E+02 0.0053 30.1 6.6 38 263-300 89-126 (461)
83 3u06_A Protein claret segregat 21.8 1.8E+02 0.0063 28.6 7.1 50 268-317 9-58 (412)
84 2huh_A Putative DNA mismatch r 21.2 1.6E+02 0.0053 25.7 5.6 65 24-96 29-94 (147)
85 1go4_E MAD1 (mitotic arrest de 20.8 1.8E+02 0.0061 23.8 5.6 32 291-322 13-44 (100)
86 3idu_A Uncharacterized protein 20.8 2.1E+02 0.0071 23.7 6.2 69 19-96 31-100 (127)
87 1naf_A ADP-ribosylation factor 20.4 1.8E+02 0.006 25.4 5.9 38 283-320 32-69 (158)
88 3e38_A Two-domain protein cont 20.2 1.2E+02 0.0041 29.1 5.2 64 25-95 270-333 (343)
No 1
>1wic_A Hypothetical protein riken cDNA 6030424E15; beta sandwich fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: b.1.11.2
Probab=100.00 E-value=4.5e-35 Score=257.01 Aligned_cols=129 Identities=29% Similarity=0.420 Sum_probs=119.5
Q ss_pred CCCeEEeCC-eeEEeccCCceeEEEEEEEcCCCCeEEEEEeeCCCCcEEEeCCcceeCCCCeEEEEEEeccCCCCCCCCC
Q 018377 3 EELLDIQPL-ELKFTFEVKKQSTCVIQLGNKSDQCVAFKVKTTSPKKYCVRPNVSIIKPKAISDFTVTMQAQRVAPPDLQ 81 (357)
Q Consensus 3 s~LL~I~P~-EL~F~~e~~kq~sc~LtLtN~Sd~~VAFKVKTTsPkkY~VRPn~GvI~P~ss~~V~VTmqa~~e~P~d~q 81 (357)
..+|.|+|. +|.|.++++++++|.|+|+|+++++||||||||+|++|||||+.|+|.||++++|.|+||++.+ ..
T Consensus 16 ~~~L~i~P~~~L~F~~~~~~~~~~~l~L~N~s~~~VaFKVKTT~p~~y~VrP~~GiI~P~~s~~V~V~lq~~~~----~~ 91 (152)
T 1wic_A 16 GPLLHISPAEELYFGSIESGEKKTLIVLTNVTKNIVAFKVRTTAPEKYRVKPSNSSCDPGASIDIIVSPHGGLT----VS 91 (152)
T ss_dssp CSSBCBBSSSCBCCCCSSSSCCCEEEEEEBCSSSCEEEEEEESCTTTEEEESSEEEECTTCEEEEEEEECSSSC----CC
T ss_pred CCeEEECCCCeEEEeCCCCceEEEEEEEEcCCCCeEEEEEECCCCCceeecCCCcEECCCCeEEEEEEecCccc----CC
Confidence 369999998 8999999999999999999999999999999999999999999999999999999999999853 37
Q ss_pred CCceEEEEEEEeC--CCCCccchhhhhhcccCCCceeEEEeEEEEeCCCCCCCcCCC
Q 018377 82 CKDKFLIQGIVVP--FGTSDEDITSDMFAKDSGKYVEEKKLRVILMSPPQSPVLLPR 136 (357)
Q Consensus 82 ~kDKFLVQSv~v~--~g~t~~di~~e~Fkk~~~~~V~E~KLrV~fv~p~~p~~~~~~ 136 (357)
|+|||+||++.++ ++++..|+. ++|++..+..++++||||+|+.+++|+++++.
T Consensus 92 ~kDKFlVqs~~v~~~~~~~~~d~~-~~wk~~~~~~i~e~kLrv~f~~~~~p~s~~~~ 147 (152)
T 1wic_A 92 AQDRFLIMAAEMEQSSGTGPAELS-QFWKEVPRNKVMEHRLRCHTVESSKPNSLMLS 147 (152)
T ss_dssp SSCCEEEEEEECCSSCCCSHHHHH-HHHHHSCTTTCEEEEECBCCCCSCSSSSSCCC
T ss_pred CCCEEEEEEEEcCCcCCCChhhHH-HHHhccCCCceEEEEEEEEECCCCCCCCcccc
Confidence 8999999999999 566666775 89999888999999999999999999999877
No 2
>2cri_A Vesicle-associated membrane protein-associated protein A; VAP-A, VAP-33, beta sandwitch fold, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=100.00 E-value=2.6e-33 Score=243.73 Aligned_cols=125 Identities=34% Similarity=0.574 Sum_probs=113.9
Q ss_pred CCeEEeCC-eeEEeccCCceeEEEEEEEcCCCCeEEEEEeeCCCCcEEEeCCcceeCCCCeEEEEEEeccCCCCCCCCCC
Q 018377 4 ELLDIQPL-ELKFTFEVKKQSTCVIQLGNKSDQCVAFKVKTTSPKKYCVRPNVSIIKPKAISDFTVTMQAQRVAPPDLQC 82 (357)
Q Consensus 4 ~LL~I~P~-EL~F~~e~~kq~sc~LtLtN~Sd~~VAFKVKTTsPkkY~VRPn~GvI~P~ss~~V~VTmqa~~e~P~d~q~ 82 (357)
.+|.|+|. +|.|.++++++++|.|+|+|+++++||||||||+|++|||||++|+|.||++++|.|+||++...| +++|
T Consensus 13 ~~L~i~P~~~L~F~~p~~~~~~~~l~L~N~s~~~VaFKVKTT~p~~y~VrP~~GiI~P~~s~~v~V~l~~~~~~p-~~~~ 91 (147)
T 2cri_A 13 QILVLDPPSDLKFKGPFTDVVTTNLKLQNPSDRKVCFKVKTTAPRRYCVRPNSGIIDPGSIVTVSVMLQPFDYDP-NEKS 91 (147)
T ss_dssp CCSEEESSSEEEEECCSSSCCCEEEEEECCSSSCEEEEEEESCTTSEEEESSEEECCTTCEEEEEEEECCCCCCT-TCCS
T ss_pred CeEEECCCCeEEEeCCCCceEEEEEEEECCCCCcEEEEEECCCCccEEEcCCCcEECCCCeEEEEEEECCCcCCc-cccC
Confidence 68999996 899999999999999999999999999999999999999999999999999999999999986555 5799
Q ss_pred CceEEEEEEEeCCCCCccchhhhhhcccCCCceeEEEeEEEEeCCCCCCC
Q 018377 83 KDKFLIQGIVVPFGTSDEDITSDMFAKDSGKYVEEKKLRVILMSPPQSPV 132 (357)
Q Consensus 83 kDKFLVQSv~v~~g~t~~di~~e~Fkk~~~~~V~E~KLrV~fv~p~~p~~ 132 (357)
+|||+||++.++++.+ ++ .++|++..+..++++||||+|+.|++.+.
T Consensus 92 kDKFlVqs~~~~~~~~--d~-~~~wk~~~~~~i~e~kLrv~f~~p~~~~~ 138 (147)
T 2cri_A 92 KHKFMVQTIFAPPNIS--DM-EAVWKEAKPDELMDSKLRCVFEMPNENDK 138 (147)
T ss_dssp CCCEEEEEEECCTTCC--CH-HHHHHHSCTTTCEEEEEEEEEECSCCSSC
T ss_pred CCEEEEEEEEcCCCcc--cH-HHHhhcCCCCceEEEEEEEEEecCCCCcc
Confidence 9999999999998643 44 58999988899999999999998876543
No 3
>1z9l_A Vesicle-associated membrane protein-associated protein A; VAP-A, cytoplasmic domain, protein binding; HET: MSE; 1.70A {Rattus norvegicus} PDB: 1z9o_A 2rr3_A 3ikk_A
Probab=100.00 E-value=8.5e-33 Score=234.50 Aligned_cols=118 Identities=35% Similarity=0.590 Sum_probs=109.1
Q ss_pred CCeEEeCC-eeEEeccCCceeEEEEEEEcCCCCeEEEEEeeCCCCcEEEeCCcceeCCCCeEEEEEEeccCCCCCCCCCC
Q 018377 4 ELLDIQPL-ELKFTFEVKKQSTCVIQLGNKSDQCVAFKVKTTSPKKYCVRPNVSIIKPKAISDFTVTMQAQRVAPPDLQC 82 (357)
Q Consensus 4 ~LL~I~P~-EL~F~~e~~kq~sc~LtLtN~Sd~~VAFKVKTTsPkkY~VRPn~GvI~P~ss~~V~VTmqa~~e~P~d~q~ 82 (357)
.+|.|+|. +|.|.++++++++|.|+|+|+|+++||||||||+|++|+|||++|+|.||++++|.|+||++...| +++|
T Consensus 9 ~~L~i~P~~~l~F~~p~~~~~~~~l~L~N~s~~~vaFKVKTT~p~~y~VrP~~G~i~P~~s~~v~V~~~~~~~~p-~~~~ 87 (128)
T 1z9l_A 9 QILVLDPPSDLKFKGPFTDVVTTNLKLQNPSDRKVCFKVKTTAPRRYCVRPNSGVIDPGSIVTVSVMLQPFDYDP-NEKS 87 (128)
T ss_dssp CCSEEESSSEEEEESCCSSCEEEEEEEECCSSSCEEEEEEESCGGGEEEESCEEEECTTCEEEEEEEECCCCCCT-TCCC
T ss_pred CeEEECCCCeEEEcCCCCceEEEEEEEECCCCCeEEEEEECCCCCceEEeCCCcEECCCCeEEEEEEECcCcCCc-cccc
Confidence 69999996 999999999999999999999999999999999999999999999999999999999999986655 5689
Q ss_pred CceEEEEEEEeCCCCCccchhhhhhcccCCCceeEEEeEEEEe
Q 018377 83 KDKFLIQGIVVPFGTSDEDITSDMFAKDSGKYVEEKKLRVILM 125 (357)
Q Consensus 83 kDKFLVQSv~v~~g~t~~di~~e~Fkk~~~~~V~E~KLrV~fv 125 (357)
+|||+||++.++++.+ ++ .++|++..+..++++||||+|.
T Consensus 88 ~dkF~V~s~~~~~~~~--~~-~~~w~~~~~~~i~e~kLrv~f~ 127 (128)
T 1z9l_A 88 KHKFMVQTIFAPPNIS--DM-EAVWKEAKPDELMDSKLRCVFE 127 (128)
T ss_dssp CCEEEEEEEECCTTCS--CH-HHHHHSCCGGGCEEEEEEEEEE
T ss_pred CCEEEEEEEECCCCcc--hH-HHHhhcCCCCceEEEEEEEEEe
Confidence 9999999999998653 44 5899998889999999999995
No 4
>1msp_A MSP, major sperm protein; cytoskeletal protein, cell motility protein; 2.50A {Ascaris suum} SCOP: b.1.11.2 PDB: 3msp_A 2bvu_A 2msp_A 1grw_A
Probab=99.97 E-value=1e-30 Score=222.53 Aligned_cols=118 Identities=22% Similarity=0.360 Sum_probs=107.5
Q ss_pred CCeEEeCC-eeEEeccCCceeEEEEEEEcCCCCeEEEEEeeCCCCcEEEeCCcceeCCCCeEEEEEEeccCCCCCCCCCC
Q 018377 4 ELLDIQPL-ELKFTFEVKKQSTCVIQLGNKSDQCVAFKVKTTSPKKYCVRPNVSIIKPKAISDFTVTMQAQRVAPPDLQC 82 (357)
Q Consensus 4 ~LL~I~P~-EL~F~~e~~kq~sc~LtLtN~Sd~~VAFKVKTTsPkkY~VRPn~GvI~P~ss~~V~VTmqa~~e~P~d~q~ 82 (357)
..|.|+|. +|.|.++++++.+|.|+|+|+|+++||||||||+|++|||||++|+|.||+++.|.|+||++.+.|++..
T Consensus 7 ~~l~i~P~~~l~F~~p~~~~~~~~l~l~N~s~~~vaFKVKTT~p~~y~VrP~~Gii~P~~s~~v~V~~q~~~~~~~~~~- 85 (126)
T 1msp_A 7 GDINTQPSQKIVFNAPYDDKHTYHIKITNAGGRRIGWAIKTTNMRRLSVDPPCGVLDPKEKVLMAVSCDTFNAATEDLN- 85 (126)
T ss_dssp CCEEEESSSCEEEESCCSSCCCEEEEEEECSSSCEEEEEEESCTTTEEEESCEEEECTTCEEEEEEEECCCCGGGSCCS-
T ss_pred CeEEEcCCCeEEEcCcCCcceEEEEEEECCCCCeEEEEEEcCCCCcEEEECCCeEECCCCEEEEEEEecCCCCCCCccC-
Confidence 67999997 8999999999999999999999999999999999999999999999999999999999999988775544
Q ss_pred CceEEEEEEEeCCCCCccchhhhhhcccCCCceeEEEeEEEEe
Q 018377 83 KDKFLIQGIVVPFGTSDEDITSDMFAKDSGKYVEEKKLRVILM 125 (357)
Q Consensus 83 kDKFLVQSv~v~~g~t~~di~~e~Fkk~~~~~V~E~KLrV~fv 125 (357)
+|||+||++.++++.+ +|+..+||.++ ..+..++|+|.|.
T Consensus 86 kDKf~Vq~~~~p~~~~-~~~~~~wf~~d--~~~~~k~L~V~Yn 125 (126)
T 1msp_A 86 NDRITIEWTNTPDGAA-KQFRREWFQGD--GMVRRKNLPIEYN 125 (126)
T ss_dssp SCEEEEEEEECCTTCC-SSCCTHHHHSS--SCCEEEEEEEEEE
T ss_pred CCEEEEEEEECCCCcc-hhhhHHhhcCC--CceEEEEEEEEec
Confidence 9999999999998864 67887888654 3689999999996
No 5
>1row_A SSP-19, MSP-domain protein like family member; beta barrel, structural genomics, PSI, protein structure initiative; 2.00A {Caenorhabditis elegans} SCOP: b.1.11.2
Probab=99.94 E-value=2.1e-26 Score=192.71 Aligned_cols=104 Identities=17% Similarity=0.271 Sum_probs=90.0
Q ss_pred eEEeCCeeEEeccCCceeEEEEEEEcCCCCeEEEEEeeCCCCcEEEeCCcceeCCCCeEEEEEEeccCCCCCCCCCCCce
Q 018377 6 LDIQPLELKFTFEVKKQSTCVIQLGNKSDQCVAFKVKTTSPKKYCVRPNVSIIKPKAISDFTVTMQAQRVAPPDLQCKDK 85 (357)
Q Consensus 6 L~I~P~EL~F~~e~~kq~sc~LtLtN~Sd~~VAFKVKTTsPkkY~VRPn~GvI~P~ss~~V~VTmqa~~e~P~d~q~kDK 85 (357)
|.|+|.+|.|.++. .+|.|+|+|+|+++||||||||+|++|||||++|+|+||++++|.|+||++ + .++||
T Consensus 3 L~i~P~~l~F~~~~---~~~~l~L~N~t~~~vaFKVKtT~p~~y~VrP~~G~I~P~~~~~i~I~~q~~---~---~~~dK 73 (109)
T 1row_A 3 LTADPPACTVPAAG---VSSTHKLVNGGAEKIVFKIKSSNNNEYRIAPVFGFVDPSGSKDVVITRTAG---A---PKEDK 73 (109)
T ss_dssp CEEESSSEEEETTC---EEEEEEEEECSSSCEEEEEEESCSSSEEEECSEEEECTTEEEEEEEEECSC---C---CEEEE
T ss_pred EEEECCEeEEeCCC---CeEEEEEEcCCCCeEEEEEEeCCCCceEEcCCceEECCCCeEEEEEEeCCC---C---CCCCE
Confidence 89999999999884 379999999999999999999999999999999999999999999999985 2 47999
Q ss_pred EEEEEEEeCCCCCccchhhhhhcccCCCceeEEEeEEE
Q 018377 86 FLIQGIVVPFGTSDEDITSDMFAKDSGKYVEEKKLRVI 123 (357)
Q Consensus 86 FLVQSv~v~~g~t~~di~~e~Fkk~~~~~V~E~KLrV~ 123 (357)
|+||++.++++. .|. .++|++... ..+.+|++.
T Consensus 74 flvq~~~~~~~~--~d~-~~~fk~~~~--~g~~~i~l~ 106 (109)
T 1row_A 74 LVVHFASAPADA--TDA-QAAFVAVAP--AGTVTIPMS 106 (109)
T ss_dssp EEEEEEECCTTC--SCH-HHHHTTCCC--CEEEEEEEE
T ss_pred EEEEEEECCCCC--CCH-HHHhhcCCC--CceEEEEEE
Confidence 999999998764 343 589998654 455666654
No 6
>1m1s_A WR4; structural genomics, major sperm protein, bioinformatics, PSI, protein structure initiative; 1.80A {Caenorhabditis elegans} SCOP: b.1.11.2
Probab=99.94 E-value=6.4e-26 Score=192.21 Aligned_cols=106 Identities=24% Similarity=0.359 Sum_probs=92.6
Q ss_pred CCeEEeCCeeEEeccCCceeEEEEEEEcCCCCeEEEEEeeCCCCcEEEeCCcceeCCCCeEEEEEEeccCCCCCCCCCCC
Q 018377 4 ELLDIQPLELKFTFEVKKQSTCVIQLGNKSDQCVAFKVKTTSPKKYCVRPNVSIIKPKAISDFTVTMQAQRVAPPDLQCK 83 (357)
Q Consensus 4 ~LL~I~P~EL~F~~e~~kq~sc~LtLtN~Sd~~VAFKVKTTsPkkY~VRPn~GvI~P~ss~~V~VTmqa~~e~P~d~q~k 83 (357)
.++.++|.+|.|+++. .+|.|+|+|+|+++||||||||+|++|||||++|+|+||++++|.|++|++ | .++
T Consensus 9 ~~~~~~p~~l~F~~~g---g~~~l~L~N~t~~~vAFKVKtT~p~~YrVrP~~G~I~Pg~~~~I~I~~q~~---~---~k~ 79 (116)
T 1m1s_A 9 SMINVDPPTGNYPATG---GNSTHNITSESDSRLAFKVKSSNNEHYRVRPVYGFVDAKGKSKLDINRLPG---P---PKE 79 (116)
T ss_dssp CSEEEESSEEEECTTC---EEEEEEEEECSSSEEEEEEEESCTTTEEEECSEEEECTTCEEEEEEEECSC---C---SCE
T ss_pred eeeecCCCeEEEecCC---CEEEEEEECCCCCeEEEEEEecCCCceEEcCCceEECCCCeEEEEEEeCCC---C---CCC
Confidence 5789999999999874 499999999999999999999999999999999999999999999999987 2 469
Q ss_pred ceEEEEEEEeCCCCCccchhhhhhcccCCCceeEEEeEEE
Q 018377 84 DKFLIQGIVVPFGTSDEDITSDMFAKDSGKYVEEKKLRVI 123 (357)
Q Consensus 84 DKFLVQSv~v~~g~t~~di~~e~Fkk~~~~~V~E~KLrV~ 123 (357)
|||+||++.++++.. |. .++|++..+ .++.+|++.
T Consensus 80 DKflVq~~~~~~d~~--d~-~~~fk~~~~--~g~~~i~l~ 114 (116)
T 1m1s_A 80 DKIVIQYAEVPAEET--DP-MAPFKAGAQ--QGEIIVKLI 114 (116)
T ss_dssp EEEEEEEEEECTTCC--CT-THHHHTTCC--CEEEEEEEE
T ss_pred CEEEEEEEECCCCCC--CH-HHHHhcCCC--CceEEEEEE
Confidence 999999999987543 33 579998654 577787764
No 7
>2ys4_A Hydrocephalus-inducing protein homolog; hydin, PAPD-like, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.14 E-value=1.3e-05 Score=66.42 Aligned_cols=75 Identities=17% Similarity=0.368 Sum_probs=60.6
Q ss_pred CCeeEEec-cCCceeEEEEEEEcCCCCeEEEEEeeCCCCcEEEeCCcceeCCCCeEEEEEEeccCCCCCCCCCCCceEEE
Q 018377 10 PLELKFTF-EVKKQSTCVIQLGNKSDQCVAFKVKTTSPKKYCVRPNVSIIKPKAISDFTVTMQAQRVAPPDLQCKDKFLI 88 (357)
Q Consensus 10 P~EL~F~~-e~~kq~sc~LtLtN~Sd~~VAFKVKTTsPkkY~VRPn~GvI~P~ss~~V~VTmqa~~e~P~d~q~kDKFLV 88 (357)
|..|.|.. ..+......+.|+|.++.++.|++++. .-|.|.|+.|.|.||+++.|.|+..|.... .....+.|
T Consensus 29 p~~l~fg~~~v~~~~~~~~~l~N~g~~~~~f~~~~~--~~F~i~P~~g~L~pg~~~~i~V~F~P~~~g----~~~~~l~v 102 (122)
T 2ys4_A 29 PDKLNFSTCPVKYSTQKILLVRNIGNKNAVFHIKTC--RPFSIEPAIGTLNVGESMQLEVEFEPQSVG----DHSGRLIV 102 (122)
T ss_dssp CSEECCCSEESSSCEEEEEEEECCSSSCEEEEEECC--TTEEEESSEEEECTTCEEEEEEEECCSSSB----CCCCBCEE
T ss_pred CCeeecCCeecCCeEEEEEEEEECCCCCEEEEEecC--CCeEEECCcCEECCCCEEEEEEEEEcCCCc----cEEEEEEE
Confidence 66788865 356777899999999999999999984 469999999999999999999999987432 33555555
Q ss_pred EE
Q 018377 89 QG 90 (357)
Q Consensus 89 QS 90 (357)
..
T Consensus 103 ~~ 104 (122)
T 2ys4_A 103 CY 104 (122)
T ss_dssp EE
T ss_pred EE
Confidence 43
No 8
>3qbt_B Inositol polyphosphate 5-phosphatase OCRL-1; protein transport, vesicular trafficking, GTPase, LOWE syndr immunoglobulin fold, RAB8A, endocytosis; HET: GNP; 2.00A {Homo sapiens}
Probab=97.76 E-value=0.00015 Score=62.13 Aligned_cols=69 Identities=13% Similarity=0.194 Sum_probs=59.5
Q ss_pred CCeEEeCCeeEEec-cCCceeEEEEEEEcCCCCeEEEEEeeC------CCCcEEEeCCcceeCCCCeEEEEEEecc
Q 018377 4 ELLDIQPLELKFTF-EVKKQSTCVIQLGNKSDQCVAFKVKTT------SPKKYCVRPNVSIIKPKAISDFTVTMQA 72 (357)
Q Consensus 4 ~LL~I~P~EL~F~~-e~~kq~sc~LtLtN~Sd~~VAFKVKTT------sPkkY~VRPn~GvI~P~ss~~V~VTmqa 72 (357)
+-+.+++.+|.|-. .++...+++|+|+|++.-+.-|++... .+..+.|.|..|.|.||+++.|.|++..
T Consensus 25 P~i~v~~~~ldFG~v~~~~~~~~~l~I~Ntg~vpa~F~f~~~~~~~~~~~~wl~v~P~~G~L~Pge~~~I~v~~~v 100 (140)
T 3qbt_B 25 PSLELSRREFVFENVKFRQLQKEKFQISNNGQVPCHFSFIPKLNDSQYCKPWLRAEPFEGYLEPNETVDISLDVYV 100 (140)
T ss_dssp CCEEESCCEEEEEEECBTCCEEEEEEEEECSSSCEEEEEECCTTCSSSSCTTEEEESCEEEECTTCEEEEEEEECB
T ss_pred CceEeeeeeEEeeeceeeeeeeeEEEEEcCCccceEEEEecCCCchhhhhHhhhcCCcccccCCCCeeEEEEEEEE
Confidence 56888889999975 467778999999999999999998752 3467899999999999999999999874
No 9
>2e6j_A Hydin protein; PAPD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.68 E-value=0.00011 Score=58.85 Aligned_cols=70 Identities=13% Similarity=0.155 Sum_probs=58.9
Q ss_pred CCeEEeCCeeEEec-cCCceeEEEEEEEcCCCCeEEEEEeeCCC---CcEEEeCCcceeCCCCeEEEEEEeccC
Q 018377 4 ELLDIQPLELKFTF-EVKKQSTCVIQLGNKSDQCVAFKVKTTSP---KKYCVRPNVSIIKPKAISDFTVTMQAQ 73 (357)
Q Consensus 4 ~LL~I~P~EL~F~~-e~~kq~sc~LtLtN~Sd~~VAFKVKTTsP---kkY~VRPn~GvI~P~ss~~V~VTmqa~ 73 (357)
+.+.+++..|.|-. ..+...++.++|+|+++.++.|++..... ..|.+.|..|.|.||++..|.|++.+.
T Consensus 8 P~i~~~~~~ldFG~v~~g~~~~~~~~l~N~g~~p~~~~~~~~~~~~~~~f~v~p~~g~i~pg~~~~i~V~f~~~ 81 (112)
T 2e6j_A 8 PKIHFNFELLDIGKVFTGSAHCYEAILYNKGSIDALFNMTPPTSALGACFVFSPKEGIIEPSGVQAIQISFSSI 81 (112)
T ss_dssp CSEEESCSEEEEEEEESSCCEEEEEEEEECCSSCEEEEECCCSSHHHHHCEEESSEEEECTTBCCEEEEEECCC
T ss_pred CEEEECcccEecEeEEECCEEEEEEEEEECCcceEEEEEecCCccccCcEEEECCcCEECCCCEEEEEEEEECC
Confidence 56788888888865 34667888999999999999999964221 469999999999999999999999875
No 10
>3qis_A Inositol polyphosphate 5-phosphatase OCRL-1; DENT disease, RAC1, RAB gtpases, APPL1, endocytic PATH golgi complex, hydrolase-protein binding complex; 2.30A {Homo sapiens} PDB: 2qv2_A
Probab=97.16 E-value=0.0016 Score=63.56 Aligned_cols=71 Identities=13% Similarity=0.202 Sum_probs=60.4
Q ss_pred CCeEEeCCeeEEec-cCCceeEEEEEEEcCCCCeEEEEEeeC------CCCcEEEeCCcceeCCCCeEEEEEEeccCC
Q 018377 4 ELLDIQPLELKFTF-EVKKQSTCVIQLGNKSDQCVAFKVKTT------SPKKYCVRPNVSIIKPKAISDFTVTMQAQR 74 (357)
Q Consensus 4 ~LL~I~P~EL~F~~-e~~kq~sc~LtLtN~Sd~~VAFKVKTT------sPkkY~VRPn~GvI~P~ss~~V~VTmqa~~ 74 (357)
+-+.|++.++.|-- .+....+++|+|+|++.-++.|++... .+..+.|.|..|+|.||+++.|.|++....
T Consensus 28 P~v~v~~~~idFg~v~~~~~~~~~l~i~N~g~~pa~f~f~~~~~~~~~~~~wl~v~p~~g~l~Pge~~~i~l~~~v~~ 105 (366)
T 3qis_A 28 PSLELSRREFVFENVKFRQLQKEKFQISNNGQVPCHFSFIPKLNDSQYCKPWLRAEPFEGYLEPNETVDISLDVYVSK 105 (366)
T ss_dssp CCEEESCSEEEEEEECBTCCEEEEEEEEECSSSCEEEEEECCTTCSSSSCTTEEEESCEEEECTTCEEEEEEEECBCT
T ss_pred CeEEEecCeEEeeeeeeCCeEEEEEEEEecCCceEEEEEEeCCCCCCCCCCcEEEeCCccEECCCCEEEEEEEEEECH
Confidence 67889999999964 567888999999999999999998753 234477999999999999999999987554
No 11
>2qsv_A Uncharacterized protein; MCSG, structural genomics, porphyromonas gingivalis W83, PSI protein structure initiative; 2.10A {Porphyromonas gingivalis}
Probab=95.29 E-value=0.058 Score=48.63 Aligned_cols=69 Identities=10% Similarity=0.218 Sum_probs=58.3
Q ss_pred CeEEeCCeeEEecc-CCceeEEEEEEEcCCCCeEEEEEeeCCCCcEEEeCCcceeCCCCeEEEEEEeccCC
Q 018377 5 LLDIQPLELKFTFE-VKKQSTCVIQLGNKSDQCVAFKVKTTSPKKYCVRPNVSIIKPKAISDFTVTMQAQR 74 (357)
Q Consensus 5 LL~I~P~EL~F~~e-~~kq~sc~LtLtN~Sd~~VAFKVKTTsPkkY~VRPn~GvI~P~ss~~V~VTmqa~~ 74 (357)
-|.++|..+.|.-- .+......++++|.++.++-++.-.. |..+.+++..+.|.||++..|.|++.+..
T Consensus 2 ~i~~~~~~idFg~v~~g~~~~~~~~i~N~g~~pl~i~~~~~-p~~~~~~~~~~~I~PG~~g~I~vt~~~~~ 71 (220)
T 2qsv_A 2 PLQVSNARLLFPISMPEDEGVVRLVVNNTDESDLQVAVVSL-PSFVSLDDRAFRLQAREPRELNLSLAVPR 71 (220)
T ss_dssp CEEESCSEEECCSBCTTCCCEEEEEEEECSSSCEEEEEEEC-CTTEECSCCEEEECSSSCEEEEEEECCCT
T ss_pred ceEEecCeeEcccccCCCcceEEEEEEeCCCCceEEEeccC-CCceEeeeCcceeCCCCceEEEEEEcchh
Confidence 37899999999763 34556779999999999999997544 88888899999999999999999998754
No 12
>2qsv_A Uncharacterized protein; MCSG, structural genomics, porphyromonas gingivalis W83, PSI protein structure initiative; 2.10A {Porphyromonas gingivalis}
Probab=94.43 E-value=0.16 Score=45.79 Aligned_cols=67 Identities=15% Similarity=0.226 Sum_probs=56.0
Q ss_pred CeEEeCCeeEEeccCCceeEEEEEEEcCCCCeEEE-EEeeCCCCcEEEeCCcceeCCCCeEEEEEEeccC
Q 018377 5 LLDIQPLELKFTFEVKKQSTCVIQLGNKSDQCVAF-KVKTTSPKKYCVRPNVSIIKPKAISDFTVTMQAQ 73 (357)
Q Consensus 5 LL~I~P~EL~F~~e~~kq~sc~LtLtN~Sd~~VAF-KVKTTsPkkY~VRPn~GvI~P~ss~~V~VTmqa~ 73 (357)
-+.++ ..+.|-.-.+....+.++|+|..+.++.+ +|+|+. +...+.+..+.|.||++..|.|++.+.
T Consensus 119 ~i~~~-~~~dfG~i~g~~~~~~f~i~N~G~~pL~I~~v~~sc-gct~~~~~~~~i~PGe~~~i~v~~~~~ 186 (220)
T 2qsv_A 119 VMELS-TYLDMGQLDGETTKAAIEIRNVGAGPLRLHSVTTRN-PALTAVPDRTEIKPGGSTLLRIAVDPQ 186 (220)
T ss_dssp CEECC-CEEEEEECTTSCEEEEEEEEECSSSCEEEEEEEECS-TTEEEEESCSEECTTCEEEEEEEECHH
T ss_pred EEEEE-eEEeeeccCCCeEEEEEEEEECCCCCEEEEEEEeCC-CCEeeecCCccCCCCCEEEEEEEEecC
Confidence 46677 77777632267788999999999999988 788754 789999999999999999999999874
No 13
>3q48_A Chaperone CUPB2; IG fold, periplasmic chaperone; 2.50A {Pseudomonas aeruginosa}
Probab=89.40 E-value=5 Score=37.46 Aligned_cols=108 Identities=15% Similarity=0.232 Sum_probs=71.0
Q ss_pred eEEeCCeeEEeccCCceeEEEEEEEcCCCCeEEEEEeeCCC----------CcEEEeCCcceeCCCCeEEEEEEeccCCC
Q 018377 6 LDIQPLELKFTFEVKKQSTCVIQLGNKSDQCVAFKVKTTSP----------KKYCVRPNVSIIKPKAISDFTVTMQAQRV 75 (357)
Q Consensus 6 L~I~P~EL~F~~e~~kq~sc~LtLtN~Sd~~VAFKVKTTsP----------kkY~VRPn~GvI~P~ss~~V~VTmqa~~e 75 (357)
|.|.|..+.|+...+ ..+|+|+|.++.++.-.+...+- .-|.|.|+.-.|+||+...|.|..... .
T Consensus 30 v~i~~TRvIy~~~~k---~~sl~l~N~~~~P~LvQsWid~~~~~~~p~~~~~pfivtPPl~rl~pg~~q~lRI~~~~~-~ 105 (257)
T 3q48_A 30 LIAQGTRVVFPASER---EVTLRVSNTSGTPVLAQAWIDDGRQDVPPEELQVPFSVTPAVTRVEPNGGAVLRIAYLKA-P 105 (257)
T ss_dssp -CCSCSEEEEETTCS---EEEEEEEECSSSCEEEEEEEESSCCSSCGGGGCCSEEEESSEEEECTTEEEEEEEEECCC-C
T ss_pred EEEcceEEEEeCCCc---EEEEEEEeCCCCeEEEEEEEEcCCCccCcccccCCEEEcCCEEEECCCCceEEEEEECCC-C
Confidence 667788888876543 68999999998887766554321 239999999999999999999987654 3
Q ss_pred CCCCCCCCceEEEEEEEeCCCCCccchhhhhhcccCCCceeEEEeEEEEeCC
Q 018377 76 APPDLQCKDKFLIQGIVVPFGTSDEDITSDMFAKDSGKYVEEKKLRVILMSP 127 (357)
Q Consensus 76 ~P~d~q~kDKFLVQSv~v~~g~t~~di~~e~Fkk~~~~~V~E~KLrV~fv~p 127 (357)
.|.|- .--|-+....+|+... + ....=......+|++-|-+.
T Consensus 106 LP~Dr--ESlf~lnv~eIPp~~~--~------~~n~Lqiair~rIKLFyRP~ 147 (257)
T 3q48_A 106 LPTDR--ESLFWLNILEVPPRDE--D------ENNALQFSFRSRFKLFFRPS 147 (257)
T ss_dssp CCSSS--CEEEEEEEEEECCC-----------------CCEEEEEEEEEECT
T ss_pred CCCCc--eeEEEEEeeecCCCCC--C------CCceEEEEEEEEEEEEEecc
Confidence 55442 2346666666665311 1 01111344678899888854
No 14
>2co7_B SAFB chaperone, putative fimbriae assembly chaperone; pilus subunit, adhesion, strand complementation, pathogenesis, fibril protein; 1.8A {Salmonella typhimurium} SCOP: b.1.11.1 b.7.2.1 PDB: 2co6_B
Probab=86.37 E-value=4.7 Score=36.64 Aligned_cols=114 Identities=11% Similarity=0.108 Sum_probs=72.2
Q ss_pred eEEeCCeeEEeccCCceeEEEEEEEcCCCCeEEEEEeeCC-----CCcEEEeCCcceeCCCCeEEEEEEeccCCCCCCCC
Q 018377 6 LDIQPLELKFTFEVKKQSTCVIQLGNKSDQCVAFKVKTTS-----PKKYCVRPNVSIIKPKAISDFTVTMQAQRVAPPDL 80 (357)
Q Consensus 6 L~I~P~EL~F~~e~~kq~sc~LtLtN~Sd~~VAFKVKTTs-----PkkY~VRPn~GvI~P~ss~~V~VTmqa~~e~P~d~ 80 (357)
|.|++..+.|+...+ ..+|+|.|.++.++.-.+..-+ ..-|.|-|+.-.|+||+...|.|.... ...|.|
T Consensus 14 v~i~~TRvIy~~~~k---~~sl~l~N~~~~p~LvQsWv~~~~~~~~~pfivtPPl~rl~p~~~q~lRI~~~~-~~lP~D- 88 (221)
T 2co7_B 14 VKLGATRVIYHAGTA---GATLSVSNPQNYPILVQSSVKAADKSSPAPFLVMPPLFRLEANQQSQLRIVRTG-GDMPTD- 88 (221)
T ss_dssp CEESCSEEEEETTSS---CEEEEEECCSSSCEEEEEEEEETTSSSBCSEEEESSEEEECTTCEEEEEEEECC-CCCCSS-
T ss_pred EEEcceEEEEcCCCC---EEEEEEEcCCCCcEEEEEEEecCCCCccCCEEEeCCEEEECCCCceEEEEEECC-CCCCCC-
Confidence 677888999986654 6799999999887766654422 234999999999999999999998875 345644
Q ss_pred CCCceEEEEEEEeCCCCCccchhhhhhcc-cCCCceeEEEeEEEEeCC
Q 018377 81 QCKDKFLIQGIVVPFGTSDEDITSDMFAK-DSGKYVEEKKLRVILMSP 127 (357)
Q Consensus 81 q~kDKFLVQSv~v~~g~t~~di~~e~Fkk-~~~~~V~E~KLrV~fv~p 127 (357)
-..-|-+....+|+.....+ ..+ =+. ..=......+|++-|-+.
T Consensus 89 -rEslf~lnv~eIPp~~~~~~-~~~-~n~~~~lqia~r~rIKlFyRP~ 133 (221)
T 2co7_B 89 -RETLQWVCIKAVPPENEPSD-TQA-KGATLDLNLSINACDKLIFRPD 133 (221)
T ss_dssp -SCEEEEEEEEEECCC-------------CEEEEEEEEEEEEEEEECT
T ss_pred -ceEEEEEEeecCCCCccccc-ccc-cCcceeEEEEeeeeeeEEEecc
Confidence 23356666666664211100 000 000 001134677888888744
No 15
>2xg5_A PAPD, chaperone protein PAPD; chaperone, chaperone-surface active protein complex; HET: EC2 EC5; 2.00A {Escherichia coli} PDB: 1pdk_A 2uy6_A 2uy7_A 2j2z_A 2xg4_A* 2w07_A* 3me0_A* 1n0l_A 2wmp_A 3dpa_A 2j7l_A 1qpp_A 1qpx_A
Probab=85.24 E-value=7.3 Score=35.32 Aligned_cols=108 Identities=13% Similarity=0.157 Sum_probs=72.9
Q ss_pred eEEeCCeeEEeccCCceeEEEEEEEcCCCC-eEEEEEeeCC-------CCcEEEeCCcceeCCCCeEEEEEEeccC-CCC
Q 018377 6 LDIQPLELKFTFEVKKQSTCVIQLGNKSDQ-CVAFKVKTTS-------PKKYCVRPNVSIIKPKAISDFTVTMQAQ-RVA 76 (357)
Q Consensus 6 L~I~P~EL~F~~e~~kq~sc~LtLtN~Sd~-~VAFKVKTTs-------PkkY~VRPn~GvI~P~ss~~V~VTmqa~-~e~ 76 (357)
|.|++..+.|+...+ ..+|+|+|.++. ++.-.+...+ ..-|.|-|+.-.|+||+.-.|.|..... ...
T Consensus 2 v~l~~TRvIy~~~~k---~~sl~l~N~~~~~p~LvQsWi~~~~~~~~~~~pfivtPPl~rl~p~~~q~lRI~~~~~~~~l 78 (218)
T 2xg5_A 2 VSLDRTRAVFDGSEK---SMTLDISNDNKQLPYLAQAWIENENQEKIITGPVIATPPVQRLEPGAKSMVRLSTTPDISKL 78 (218)
T ss_dssp EEESCSEEEEETTSS---EEEEEEEECCSSSCEEEEEEEECTTSCEECSSSEEEECSEEEECTTCEEEEEEEECGGGGGS
T ss_pred cEeCceEEEEeCCCC---EEEEEEEcCCCCCcEEEEEEEecCCCCccccCCEEEcCCeEEECCCCceEEEEEecCCCCCC
Confidence 567788899987654 779999999887 7766654432 2349999999999999999999988752 235
Q ss_pred CCCCCCCceEEEEEEEeCCCCCccchhhhhhcccCCCceeEEEeEEEEeCC
Q 018377 77 PPDLQCKDKFLIQGIVVPFGTSDEDITSDMFAKDSGKYVEEKKLRVILMSP 127 (357)
Q Consensus 77 P~d~q~kDKFLVQSv~v~~g~t~~di~~e~Fkk~~~~~V~E~KLrV~fv~p 127 (357)
|.| -..-|-+....+|+... + ...=......+|++-|-+.
T Consensus 79 P~D--rESlf~lnv~eIPp~~~--~-------~n~lqia~r~rIKlFyRP~ 118 (218)
T 2xg5_A 79 PQD--RESLFYFNLREIPPRSE--K-------ANVLQIALQTKIKLFYRPA 118 (218)
T ss_dssp CSS--SCEEEEEEEEEECCCCC--C-------TTEEEEEEEEEEEEEEECG
T ss_pred CCC--ceEEEEEEeecCCCCCC--C-------CceEEEEehheeeEEEcCc
Confidence 654 23345555556664211 1 0001234678899888744
No 16
>3efg_A Protein SLYX homolog; xanthomonas campestris PV. campestris, coiled-coil, structur genomics, PSI-2, protein structure initiative; 2.00A {Xanthomonas campestris PV}
Probab=83.06 E-value=3.3 Score=32.39 Aligned_cols=50 Identities=18% Similarity=0.103 Sum_probs=42.7
Q ss_pred HHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccc
Q 018377 274 LKLKLNVMDSQLREAEHTIRKLMEARKLATREKDMLKHELEVLRRKSNLR 323 (357)
Q Consensus 274 l~~k~~~~~~~~~ea~~~i~kl~ee~~~~~~~~~~L~~El~~lr~~~~~~ 323 (357)
|..++..||.|+.-.+.+|..|++.--.--++.++|+.+|..|+.+-...
T Consensus 12 le~Ri~~LE~klAfqE~tIeeLn~~v~~Qq~~Id~L~~ql~~L~~rl~~~ 61 (78)
T 3efg_A 12 LEARLVELETRLSFQEQALTELSEALADARLTGARNAELIRHLLEDLGKV 61 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44578899999999999999999999999999999999999999876543
No 17
>1klf_A FIMC chaperone, chaperone protein FIMC; adhesin-chaperone complex, mannose-bound, chaperone/adhesin complex complex; HET: MAN; 2.79A {Escherichia coli} SCOP: b.1.11.1 b.7.2.1 PDB: 1kiu_A* 3rfz_C 1qun_A 1bf8_A 1ze3_C 3bwu_C 3jwn_C
Probab=82.83 E-value=8.6 Score=34.54 Aligned_cols=110 Identities=9% Similarity=0.154 Sum_probs=72.4
Q ss_pred eEEeCCeeEEeccCCceeEEEEEEEcCCCC-eEEEEEeeCC-----CCcEEEeCCcceeCCCCeEEEEEEe-ccCCCCCC
Q 018377 6 LDIQPLELKFTFEVKKQSTCVIQLGNKSDQ-CVAFKVKTTS-----PKKYCVRPNVSIIKPKAISDFTVTM-QAQRVAPP 78 (357)
Q Consensus 6 L~I~P~EL~F~~e~~kq~sc~LtLtN~Sd~-~VAFKVKTTs-----PkkY~VRPn~GvI~P~ss~~V~VTm-qa~~e~P~ 78 (357)
+.|++..+.|+...+ ..+|+|+|.++. ++.-.+...+ ..-|.|-|+.-.|+||+.-.|.|.. .. ...|.
T Consensus 2 v~l~~TRvIy~~~~k---~~sl~l~N~~~~~p~LvQsWi~~~~~~~~~pfivtPPl~rl~p~~~q~lRI~~~~~-~~lP~ 77 (205)
T 1klf_A 2 VALGATRVIYPAGQK---QVQLAVTNNDENSTYLIQSWVENADGVKDGRFIVTPPLFAMKGKKENTLRILDATN-NQLPQ 77 (205)
T ss_dssp EEESCSEEEEETTCS---EEEEEEEECCSSCCEEEEEEEEETTSCCCSSEEEESSEEEECSSEEEEEEEEECSC-SCSCS
T ss_pred eEecceEEEEeCCCc---EEEEEEEcCCCCCcEEEEEEEecCCCCccCCEEEcCCeEEECCCCceEEEEEecCC-CCCCC
Confidence 567788899987654 779999999887 7666654322 2349999999999999999999988 54 34564
Q ss_pred CCCCCceEEEEEEEeCCCCCccchhhhhhcccCCCceeEEEeEEEEeCC
Q 018377 79 DLQCKDKFLIQGIVVPFGTSDEDITSDMFAKDSGKYVEEKKLRVILMSP 127 (357)
Q Consensus 79 d~q~kDKFLVQSv~v~~g~t~~di~~e~Fkk~~~~~V~E~KLrV~fv~p 127 (357)
| -..-|-+....+|+.....+ ....=......+|++-|-+.
T Consensus 78 D--rEslf~lnv~eIPp~~~~~~------~~n~lqia~r~riKlFyRP~ 118 (205)
T 1klf_A 78 D--RESLFWMNVKAIPSMDKSKL------TENTLQLAIISRIKLYYRPA 118 (205)
T ss_dssp S--SCEEEEEEEEEECCCCTTST------TSCEEEEEEEEEEEEEEECT
T ss_pred C--ceEEEEEEeEecCCCCcccc------CCceEEEEeeeeeeEEEccc
Confidence 4 23356666666664211000 00001234577889888744
No 18
>4djm_A DRAB; chaperone, PILI; 2.52A {Escherichia coli}
Probab=80.30 E-value=9.6 Score=35.20 Aligned_cols=84 Identities=15% Similarity=0.175 Sum_probs=59.5
Q ss_pred eEEeCCeeEEeccCCceeEEEEEEEcCCCCeEEEEEeeC-----CCCcEEEeCCcceeCCCCeEEEEEEeccCCCCCCCC
Q 018377 6 LDIQPLELKFTFEVKKQSTCVIQLGNKSDQCVAFKVKTT-----SPKKYCVRPNVSIIKPKAISDFTVTMQAQRVAPPDL 80 (357)
Q Consensus 6 L~I~P~EL~F~~e~~kq~sc~LtLtN~Sd~~VAFKVKTT-----sPkkY~VRPn~GvI~P~ss~~V~VTmqa~~e~P~d~ 80 (357)
|.|.+..+.|+...+ ..+|+|+|..+.++.-.+... ...-|.|.|+.-.|+||+...|.|..... ..|.|-
T Consensus 24 v~l~~TRvIy~~~~k---~~sl~l~N~~~~P~LvQsWv~~~~~~~~~pfivtPPlfRlep~~~q~lRIi~~~~-~LP~DR 99 (239)
T 4djm_A 24 LHLGATRVVYNPASS---GETLTVINDQDYPMLVQSEVLSEDQKSPAPFVVTPPLFRLDGQQSSRLRIVRTGG-EFPPDR 99 (239)
T ss_dssp CEESCSEEEECTTSS---CEEEEEEECSSSCEEEEEEEECTTSSSBCSEEEESSEEEECTTEEEEEEEEECSC-CCCSSS
T ss_pred EEEcceEEEEeCCCC---EEEEEEEeCCCCcEEEEEEEEcCCCCccCCEEEcCCeEEECCCCceEEEEEECCC-CCCCCc
Confidence 678888999986543 679999999888765554421 12349999999999999999999987653 355442
Q ss_pred CCCceEEEEEEEeCC
Q 018377 81 QCKDKFLIQGIVVPF 95 (357)
Q Consensus 81 q~kDKFLVQSv~v~~ 95 (357)
..-|-+....+|+
T Consensus 100 --ESlf~lnv~eIPp 112 (239)
T 4djm_A 100 --ESLQWICVKGIPP 112 (239)
T ss_dssp --CEEEEEEEEEECC
T ss_pred --eEEEEEEEEecCC
Confidence 3345555555554
No 19
>1l4i_A SFAE protein; periplasmic chaperone, immunoglobulin fold; 2.20A {Escherichia coli} SCOP: b.1.11.1 b.7.2.1
Probab=79.17 E-value=14 Score=33.12 Aligned_cols=111 Identities=8% Similarity=0.179 Sum_probs=71.0
Q ss_pred eEEeCCeeEEeccCCceeEEEEEEEcCCC-CeEEEEEeeCC-----CCcEEEeCCcceeCCCCeEEEEEE-eccCCCCCC
Q 018377 6 LDIQPLELKFTFEVKKQSTCVIQLGNKSD-QCVAFKVKTTS-----PKKYCVRPNVSIIKPKAISDFTVT-MQAQRVAPP 78 (357)
Q Consensus 6 L~I~P~EL~F~~e~~kq~sc~LtLtN~Sd-~~VAFKVKTTs-----PkkY~VRPn~GvI~P~ss~~V~VT-mqa~~e~P~ 78 (357)
+.|++..+.|+...+ ..+|+|+|.++ .++.-.+..-+ ..-|.|-|+.-.|+||+...|.|. ... ...|.
T Consensus 2 v~l~~TRvIy~~~~k---~~sl~l~N~~~~~p~LvQsWv~~~~~~~~~pfivtPPl~rl~p~~~q~lRI~~~~~-~~lP~ 77 (206)
T 1l4i_A 2 VALGATRVIYPEGQK---QVQLAVTNNDDKSSYLIQSWIENAEGKKDARFVITPPLFSMQGKKENTLRIIDATN-GQMPE 77 (206)
T ss_dssp EEESCSEEEEETTCS---EEEEEEEECCTTCEEEEEEEEEETTSCBCSSEEEESSEEEEESSEEEEEEEEECCT-TCSCS
T ss_pred eEeCceEEEEeCCCc---EEEEEEEeCCCCccEEEEEEEecCCCCccCCEEEcCCeEEECCCCceEEEEEecCC-CCCCC
Confidence 567788899987654 77999999986 77666654321 234999999999999999999998 643 34565
Q ss_pred CCCCCceEEEEEEEeCCCCCccchhhhhhcccCCCceeEEEeEEEEeCCC
Q 018377 79 DLQCKDKFLIQGIVVPFGTSDEDITSDMFAKDSGKYVEEKKLRVILMSPP 128 (357)
Q Consensus 79 d~q~kDKFLVQSv~v~~g~t~~di~~e~Fkk~~~~~V~E~KLrV~fv~p~ 128 (357)
|- ..-|-+....+|+.....+ ....=......+|++-|-+..
T Consensus 78 Dr--Eslf~lnv~eIPp~~~~~~------~~n~lqia~r~riKlFyRP~~ 119 (206)
T 1l4i_A 78 DR--ESLFWVNVKAIPAMDKAKT------GENYLQFAIVSRIKLLYRPQG 119 (206)
T ss_dssp SS--CEEEEEEEEEEECCC--------------CCCEEEEEEEEEEECTT
T ss_pred Cc--eEEEEEEeecCCCCccccc------CCceEEEEhhheeeEEEeccc
Confidence 42 2345555555554211100 001123456789999887543
No 20
>2r39_A FIXG-related protein; structural GE PSI-2, protein structure initiative, midwest center for STR genomics, MCSG, iron, iron-sulfur; 2.02A {Vibrio parahaemolyticus}
Probab=78.12 E-value=9.4 Score=30.94 Aligned_cols=53 Identities=11% Similarity=0.251 Sum_probs=40.2
Q ss_pred eeEEEEEEEcCCCCeEEEEEeeCCCCcEEE-eCCcceeCCCCeEEEEEEeccCC
Q 018377 22 QSTCVIQLGNKSDQCVAFKVKTTSPKKYCV-RPNVSIIKPKAISDFTVTMQAQR 74 (357)
Q Consensus 22 q~sc~LtLtN~Sd~~VAFKVKTTsPkkY~V-RPn~GvI~P~ss~~V~VTmqa~~ 74 (357)
+...+|+|.|++.++..|.++-.....+.+ .|..=.|.||+...+.|.+....
T Consensus 32 ~N~Ytlki~Nkt~~~~~~~l~v~g~~~l~~~g~~~i~v~~g~~~~~~v~v~~~~ 85 (118)
T 2r39_A 32 ENTYTLKVINKTQQVQEYNLDVKGLNDVSWYGKQTIQVEPGEVLNLPMSLGADP 85 (118)
T ss_dssp EEEEEEEEEECSSSCEEEEEEEESCSSCEEESCCEEEECTTCEEEEEEEEEECG
T ss_pred EEEEEEEEEECCCCCEEEEEEEeCCcccEEeCCCcEEECCCCEEEEEEEEEECh
Confidence 347799999999999999988876444654 35556788999888888776543
No 21
>4ay0_A Chaperone protein CAF1M; amino acid motifs, bacterial capsules, bacterial proteins, gene expression regulation, molecular chaperones, binding; 1.52A {Yersinia pestis} PDB: 1p5v_A 1p5u_A 1z9s_A 2os7_A 3dos_A 3dpb_A 3dsn_A 4b0m_M 4az8_A 4ayf_A
Probab=77.22 E-value=39 Score=30.63 Aligned_cols=108 Identities=11% Similarity=0.203 Sum_probs=67.2
Q ss_pred eEEeCCeeEEeccCCceeEEEEEEEcCCCCeEEEEEeeCC-------CCcEEEeCCcceeCCCCeEEEEEEeccCCCCCC
Q 018377 6 LDIQPLELKFTFEVKKQSTCVIQLGNKSDQCVAFKVKTTS-------PKKYCVRPNVSIIKPKAISDFTVTMQAQRVAPP 78 (357)
Q Consensus 6 L~I~P~EL~F~~e~~kq~sc~LtLtN~Sd~~VAFKVKTTs-------PkkY~VRPn~GvI~P~ss~~V~VTmqa~~e~P~ 78 (357)
+.|+-..+.|+...+ ..+|+|+|.++.++.-...-.+ ..-|.|.|+.-.|+||+...|.|..... ..|.
T Consensus 14 v~l~~TRvIy~~~~k---~~sl~l~N~~~~p~LvQswv~~~~~~~~~~~pFivtPPl~Rl~p~~~q~lRI~~~~~-~LP~ 89 (218)
T 4ay0_A 14 VTIGESRIIYPLDAA---GVMVSVKNTQDYPVLIQSRIYDENKEKESEDPFVVTPPLFRLDAKQQNSLRIAQAGG-VFPR 89 (218)
T ss_dssp EEESCCEEEEETTCS---CEEEEEECCSSSCEEEEEEEECTTSCCCSSCSEEEESSEEEECTTCEEEEEEEECSC-CCCS
T ss_pred EEECceEEEECCCCc---EEEEEEEcCCCCCEEEEEEEecCCCCccccCCEEECCCeEEeCCCCceEEEEEecCC-CCCc
Confidence 556667788876443 6789999998887666644311 1239999999999999999999988653 3564
Q ss_pred CCCCCceEEEEEEEeCCCCCccchhhhhhcccCCCceeEEEeEEEEeCC
Q 018377 79 DLQCKDKFLIQGIVVPFGTSDEDITSDMFAKDSGKYVEEKKLRVILMSP 127 (357)
Q Consensus 79 d~q~kDKFLVQSv~v~~g~t~~di~~e~Fkk~~~~~V~E~KLrV~fv~p 127 (357)
| -.--|-+....+|+..... .+. =......+|++-|-+.
T Consensus 90 D--RESlf~lnv~eIPp~~~~~------~n~--lqia~r~rIKlFyRP~ 128 (218)
T 4ay0_A 90 D--KESLKWLCVKGIPPKDEDI------WVD--VQFAINNCIKLLVRPN 128 (218)
T ss_dssp S--SCEEEEEEEEEECC----------------------CEEEEEEECT
T ss_pred C--cEEEEEEEEEecCCCCccc------cce--eEEEEEEEEEEEEcCc
Confidence 4 1234666666776521110 111 1234567889888744
No 22
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=76.95 E-value=4.8 Score=34.53 Aligned_cols=37 Identities=16% Similarity=0.215 Sum_probs=15.8
Q ss_pred HHhhhHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHH
Q 018377 266 KLAKDFEELKLKLNVMDSQLREAEHTIRKLMEARKLA 302 (357)
Q Consensus 266 ~~~~d~~~l~~k~~~~~~~~~ea~~~i~kl~ee~~~~ 302 (357)
+++.|.-.++.+...++..+.+-..-|..|++|-.++
T Consensus 65 NiadEl~k~~~~~~~L~~~l~~~~kE~~~lK~el~~~ 101 (138)
T 3hnw_A 65 NIADDYFKAKKMADSLSLDIENKDKEIYDLKHELIAA 101 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444444444443333
No 23
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=71.73 E-value=16 Score=30.68 Aligned_cols=58 Identities=28% Similarity=0.436 Sum_probs=39.8
Q ss_pred hhhHHHHHhhhHHHHHHhhhhhhhhhHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHhhh
Q 018377 260 KDILELKLAKDFEELKLKLNVMDSQLREAEHTIRKLME--------------ARKLATREKDMLKHELEVLRRKS 320 (357)
Q Consensus 260 ~~~~~~~~~~d~~~l~~k~~~~~~~~~ea~~~i~kl~e--------------e~~~~~~~~~~L~~El~~lr~~~ 320 (357)
.+....++.++++.|+.. ++.-..||...|..|+. .+..|.-+++.|+.|++.|++..
T Consensus 13 rD~~Ie~Lkreie~lk~e---le~l~~E~q~~v~ql~~~i~~Le~eL~e~r~~~q~a~~e~e~Lr~e~~~l~~~~ 84 (120)
T 3i00_A 13 KDHLIERLYREISGLKAQ---LENMKTESQRVVLQLKGHVSELEADLAEQQHLRQQAADDCEFLRAELDELRRQR 84 (120)
T ss_dssp HHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 444566777777777653 34446677777776665 45566667899999999998654
No 24
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=71.41 E-value=14 Score=31.56 Aligned_cols=47 Identities=19% Similarity=0.201 Sum_probs=28.6
Q ss_pred hhHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018377 269 KDFEELKLKLNVMDSQLREAEHTIRKLMEARKLATREKDMLKHELEV 315 (357)
Q Consensus 269 ~d~~~l~~k~~~~~~~~~ea~~~i~kl~ee~~~~~~~~~~L~~El~~ 315 (357)
+....||..+...+.++.++..-+.+|+++.+.--.+..+|+.||..
T Consensus 89 kE~~~lK~el~~~~~k~e~~~~e~~~l~~~~~~l~~~~~~le~~~~~ 135 (138)
T 3hnw_A 89 KEIYDLKHELIAAQIKAESSAKEIKELKSEINKYQKNIVKLETELND 135 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33445556666666666666666666666666666666666666654
No 25
>3gfu_C Chaperone protein FAEE; immunoglobulin like fold, chaperone, fimbrium, immunoglobulin domain, periplasm, plasmid, cell adhesion; 1.99A {Escherichia coli} PDB: 3gew_B 3f65_A 3f6i_A 3f6l_A
Probab=70.38 E-value=29 Score=31.74 Aligned_cols=106 Identities=13% Similarity=0.193 Sum_probs=68.1
Q ss_pred eEEeCCeeEEeccCCceeEEEEEEEcCCCC-eEEEEEeeC--C----CCcEEEeCCcceeCCCCeEEEEEEeccCCCCCC
Q 018377 6 LDIQPLELKFTFEVKKQSTCVIQLGNKSDQ-CVAFKVKTT--S----PKKYCVRPNVSIIKPKAISDFTVTMQAQRVAPP 78 (357)
Q Consensus 6 L~I~P~EL~F~~e~~kq~sc~LtLtN~Sd~-~VAFKVKTT--s----PkkY~VRPn~GvI~P~ss~~V~VTmqa~~e~P~ 78 (357)
+.++...+.|+...+ ..+|+|+|..++ ++.-.+... . ..-|.|.|+.-.|+||+.-.|.|..... ..|.
T Consensus 2 ~~l~~TRvIy~~~~k---~~sl~l~N~~~~~p~LvQsWid~~~~~~~~~pfivtPPlfRlep~~~q~lRIi~~~~-~LP~ 77 (224)
T 3gfu_C 2 LAVDQTRYIFRGDKD---ALTITVTNNDKERTFGGQAWVDNIVEKDTRPTFVVTPSFFKVKPNGQQTLRIIMASD-HLPK 77 (224)
T ss_dssp EECSCSEEEEETTSS---CEEEEEEECCSSCCEEEEEEEEESSCCSCSCSEEEESSEEEECTTCEEEEEEEECSC-CCCS
T ss_pred ccccceEEEEeCCCc---eEEEEEEeCCCCccEEEEEEEecCCCCcccCCEEEcCCeEEECCCCceEEEEEECCC-CCCC
Confidence 456667888876543 679999999875 443333221 1 2249999999999999999999987653 3554
Q ss_pred CCCCCceEEEEEEEeCCCCCccchhhhhhcccCCCceeEEEeEEEEeCC
Q 018377 79 DLQCKDKFLIQGIVVPFGTSDEDITSDMFAKDSGKYVEEKKLRVILMSP 127 (357)
Q Consensus 79 d~q~kDKFLVQSv~v~~g~t~~di~~e~Fkk~~~~~V~E~KLrV~fv~p 127 (357)
| -..-|-+....+|+.. . ...=......+|++-|-+.
T Consensus 78 D--RESlf~lnv~eIPp~~-~---------~n~Lqiair~rIKLFyRP~ 114 (224)
T 3gfu_C 78 D--KESVYWLNLQDIPPAL-E---------GSGIAVALRTKLKLFYRPK 114 (224)
T ss_dssp S--SCEEEEEEEEEECCCC-S---------SSBCCEEEEEEEEEEEECG
T ss_pred C--ceEEEEEEeecCCCCC-C---------CCeEEEEEEEEeeEEEccc
Confidence 4 2334555555566421 0 0112345778899888744
No 26
>1nlw_A MAD protein, MAX dimerizer; transcription factor, DNA, BHLHZ, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.38.1.1
Probab=67.31 E-value=11 Score=29.28 Aligned_cols=37 Identities=30% Similarity=0.401 Sum_probs=32.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 018377 284 QLREAEHTIRKLMEARKLATREKDMLKHELEVLRRKS 320 (357)
Q Consensus 284 ~~~ea~~~i~kl~ee~~~~~~~~~~L~~El~~lr~~~ 320 (357)
-|..|-.-|..|.++.....++++.|+.|.+.|+++-
T Consensus 41 iL~kA~~yI~~L~~~~~~l~~e~~~L~~e~~~L~~~L 77 (80)
T 1nlw_A 41 LLTKAKLHIKKLEDSDRKAVHQIDQLQREQRHLKRQL 77 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3678888999999999999999999999999998764
No 27
>3rfr_A PMOB; membrane, oxidoreductase; 2.68A {Methylocystis SP} PDB: 3chx_A
Probab=66.94 E-value=26 Score=35.30 Aligned_cols=65 Identities=14% Similarity=0.185 Sum_probs=46.8
Q ss_pred eEEeCCeeEEeccCCceeEEEEEEEcCCCCeEEEEEeeCCCCcEE------E---------------eCCcceeCCCCeE
Q 018377 6 LDIQPLELKFTFEVKKQSTCVIQLGNKSDQCVAFKVKTTSPKKYC------V---------------RPNVSIIKPKAIS 64 (357)
Q Consensus 6 L~I~P~EL~F~~e~~kq~sc~LtLtN~Sd~~VAFKVKTTsPkkY~------V---------------RPn~GvI~P~ss~ 64 (357)
+.++-..-.|..+ ++...-+|+++|+++++|-+.==+|+.-+|. . .|+ -|.||++.
T Consensus 284 V~~~v~~A~Y~vp-gR~l~~~~~VtN~g~~pvrlgeF~tA~vrFlnp~v~~~~~~~p~~l~a~~GL~s~~--pI~PGETr 360 (419)
T 3rfr_A 284 VTTELNGGVYKVP-GRELTINVKVKNGTSQPVRLGEYTAAGLRFLNPTVFTQKPDFPDYLLADRGLSNDD--VIAPGESK 360 (419)
T ss_dssp CEEEEEEEEEESS-SSEEEEEEEEECCSSSCBEEEEEECSSCEEECTTTCSSCCCCCTTTEESCCCCCCC--CBCTTCEE
T ss_pred eEEEEeceEEecC-CcEEEEEEEEecCCCCceEEeeEEEccEEEeCcccccCCCCCchhhhhccCCCCCC--CcCCCcce
Confidence 3444444556544 5788999999999999999885555555543 1 233 59999999
Q ss_pred EEEEEeccC
Q 018377 65 DFTVTMQAQ 73 (357)
Q Consensus 65 ~V~VTmqa~ 73 (357)
+|.|+.|.-
T Consensus 361 t~~V~a~da 369 (419)
T 3rfr_A 361 EIVVKIQDA 369 (419)
T ss_dssp EEEEEEECH
T ss_pred EEEEEeehH
Confidence 999999853
No 28
>1yew_A Particulate methane monooxygenase, B subunit; membrane protein, beta barrel, oxidoreductase; 2.80A {Methylococcus capsulatus} PDB: 3rgb_A
Probab=63.82 E-value=38 Score=33.72 Aligned_cols=67 Identities=12% Similarity=0.185 Sum_probs=47.8
Q ss_pred CeEEeCCeeEEeccCCceeEEEEEEEcCCCCeEEEEEeeCCCCcEE----------------------EeCCcceeCCCC
Q 018377 5 LLDIQPLELKFTFEVKKQSTCVIQLGNKSDQCVAFKVKTTSPKKYC----------------------VRPNVSIIKPKA 62 (357)
Q Consensus 5 LL~I~P~EL~F~~e~~kq~sc~LtLtN~Sd~~VAFKVKTTsPkkY~----------------------VRPn~GvI~P~s 62 (357)
.+.++...-.|..+ ++..+-+++++|+++.+|-..==+|+.-+|. |.|+ .-|.||+
T Consensus 249 ~V~~~v~~A~Y~vp-gR~l~~~~~VtN~g~~pvrlgeF~tA~vrFln~~~~~~~~~~P~~lla~~gL~vsd~-~pI~PGE 326 (382)
T 1yew_A 249 TVSVKVEDATYRVP-GRAMRMKLTITNHGNSPIRLGEFYTASVRFLDSDVYKDTTGYPEDLLAEDGLSVSDN-SPLAPGE 326 (382)
T ss_dssp SEEEEEEEEEEESS-CSEEEEEEEEEECSSSCEEEEEEECSSCEEECTTTCCCCSCCCGGGEETTCEEESCC-SCBCTTC
T ss_pred ceEEEeeccEEecC-CcEEEEEEEEEcCCCCceEeeeEEeccEEEeCCcccccCCCChHHhhccCCceeCCC-CCcCCCc
Confidence 34444444555544 5788999999999999999886666655552 2332 3489999
Q ss_pred eEEEEEEeccC
Q 018377 63 ISDFTVTMQAQ 73 (357)
Q Consensus 63 s~~V~VTmqa~ 73 (357)
+.+|.|+.|.-
T Consensus 327 Tr~~~v~a~da 337 (382)
T 1yew_A 327 TRTVDVTASDA 337 (382)
T ss_dssp EEEEEEEEECH
T ss_pred eeEEEEEeehH
Confidence 99999999863
No 29
>2oqq_A Transcription factor HY5; homodimer leucine zipper; 2.00A {Arabidopsis thaliana}
Probab=62.95 E-value=14 Score=26.10 Aligned_cols=34 Identities=24% Similarity=0.388 Sum_probs=18.9
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018377 280 VMDSQLREAEHTIRKLMEARKLATREKDMLKHEL 313 (357)
Q Consensus 280 ~~~~~~~ea~~~i~kl~ee~~~~~~~~~~L~~El 313 (357)
++|.+-.+-+.-...|.|--.+-..||++|+|=|
T Consensus 7 eLE~r~k~le~~naeLEervstLq~EN~mLRqvl 40 (42)
T 2oqq_A 7 ELENRVKDLENKNSELEERLSTLQNENQMLRHIL 40 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHh
Confidence 3444444444455555444444456788888743
No 30
>3m9b_A Proteasome-associated ATPase; coil COIL with 5 beta-strand barrel inter domain, chaperone; 3.94A {Mycobacterium tuberculosis} PDB: 3m9d_A
Probab=59.64 E-value=8.4 Score=36.39 Aligned_cols=41 Identities=22% Similarity=0.313 Sum_probs=32.6
Q ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 018377 278 LNVMDSQLREAEHTIRKLMEARKLATREKDMLKHELEVLRR 318 (357)
Q Consensus 278 ~~~~~~~~~ea~~~i~kl~ee~~~~~~~~~~L~~El~~lr~ 318 (357)
+.+++.++....+-..+|.++.+.+-+|..+|+.|++.|+.
T Consensus 56 l~eL~~ql~~L~arNe~L~~~Lk~ar~El~~LkeElerL~s 96 (251)
T 3m9b_A 56 IHQLEARIDSLAARNSKLMETLKEARQQLLALREEVDRLGQ 96 (251)
T ss_dssp HHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 33455556666667788999999999999999999999884
No 31
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=57.85 E-value=12 Score=28.74 Aligned_cols=36 Identities=11% Similarity=0.127 Sum_probs=16.5
Q ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018377 279 NVMDSQLREAEHTIRKLMEARKLATREKDMLKHELE 314 (357)
Q Consensus 279 ~~~~~~~~ea~~~i~kl~ee~~~~~~~~~~L~~El~ 314 (357)
..|+.++.+.+.....|..|...--++...|+.|+.
T Consensus 32 ~~LE~~v~~le~~~~~l~~en~~Lr~~i~~L~~El~ 67 (70)
T 1gd2_E 32 KALETQVVTLKELHSSTTLENDQLRQKVRQLEEELR 67 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555444444444444444444444444443
No 32
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=57.81 E-value=26 Score=28.68 Aligned_cols=45 Identities=31% Similarity=0.479 Sum_probs=28.1
Q ss_pred HHHHhhhhhhhhhHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHH
Q 018377 273 ELKLKLNVMDSQLREAEHTIRKLM-------EARKLATREKDMLKHELEVLR 317 (357)
Q Consensus 273 ~l~~k~~~~~~~~~ea~~~i~kl~-------ee~~~~~~~~~~L~~El~~lr 317 (357)
.++.++..++.++.....-+.+|+ .-|..+-+++.++.+||+-|.
T Consensus 9 ~lre~l~~le~~~~~~~~e~~~L~~~l~eE~~~R~~aE~~~~~ie~ElEeLT 60 (97)
T 2eqb_B 9 QLKEDYNTLKRELSDRDDEVKRLREDIAKENELRTKAEEEADKLNKEVEDLT 60 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555555555444444443 345577789999999999875
No 33
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=52.98 E-value=32 Score=27.23 Aligned_cols=18 Identities=22% Similarity=0.420 Sum_probs=11.3
Q ss_pred hhhhhhhhHHHHHHHHHH
Q 018377 278 LNVMDSQLREAEHTIRKL 295 (357)
Q Consensus 278 ~~~~~~~~~ea~~~i~kl 295 (357)
++.++.|...|-.+|..|
T Consensus 8 leqLE~KIq~avdtI~lL 25 (81)
T 2jee_A 8 FEKLEAKVQQAIDTITLL 25 (81)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 445666666776666663
No 34
>1lwu_C Fibrinogen gamma chain; heterotrimer, protein-peptide complex, blood clotting; HET: NDG MAN NAG BMA GAL; 2.80A {Petromyzon marinus} SCOP: d.171.1.1 h.1.8.1 PDB: 1n73_C*
Probab=49.56 E-value=36 Score=33.02 Aligned_cols=54 Identities=13% Similarity=0.190 Sum_probs=42.2
Q ss_pred HhhhHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 018377 267 LAKDFEELKLKLNVMDSQLREAEHTIRKLMEARKLATREKDMLKHELEVLRRKS 320 (357)
Q Consensus 267 ~~~d~~~l~~k~~~~~~~~~ea~~~i~kl~ee~~~~~~~~~~L~~El~~lr~~~ 320 (357)
+++.+..|..++..++..+..+.+.|..|++.-.+.-.+.++|++.+..|+.+-
T Consensus 3 ~~~~~~~~~~~~~~~e~~i~~~~~~i~~L~~~l~~~~~~i~~l~~~i~~l~~~~ 56 (323)
T 1lwu_C 3 GQKTVQKILEEVRILEQIGVSHDAQIQELSEMWRVNQQFVTRLQQQLVDIRQTC 56 (323)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455667777778888888888888999998888877788888998888887653
No 35
>2qyw_A Vesicle transport through interaction with T-SNAR homolog; HABC domain, protein transport, endocytosis; 2.00A {Mus musculus} PDB: 2v8s_V
Probab=49.06 E-value=52 Score=26.39 Aligned_cols=48 Identities=23% Similarity=0.317 Sum_probs=33.5
Q ss_pred HHHHHhhhhhhhhhHHHHHHHHHHHHHHHH-HHHHHHH-------HHHHHHHHHhh
Q 018377 272 EELKLKLNVMDSQLREAEHTIRKLMEARKL-ATREKDM-------LKHELEVLRRK 319 (357)
Q Consensus 272 ~~l~~k~~~~~~~~~ea~~~i~kl~ee~~~-~~~~~~~-------L~~El~~lr~~ 319 (357)
++.|..+...+..+.||..+|..+.-|-+. ...+|.+ -++||+-|+++
T Consensus 45 e~rk~~i~~ie~~ldEA~eLl~qMelE~r~~p~s~R~~~~~klr~Yk~dL~~lk~e 100 (102)
T 2qyw_A 45 EEKKKLVRDFDEKQQEANETLAEMEEELRYAPLTFRNPMMSKLRNYRKDLAKLHRE 100 (102)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 456777888889999999999999887553 3333443 34566666553
No 36
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=46.24 E-value=42 Score=25.63 Aligned_cols=38 Identities=18% Similarity=0.235 Sum_probs=31.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 018377 285 LREAEHTIRKLMEARKLATREKDMLKHELEVLRRKSNL 322 (357)
Q Consensus 285 ~~ea~~~i~kl~ee~~~~~~~~~~L~~El~~lr~~~~~ 322 (357)
|..|-.-|..|.++...-.++.+.|++|.+.|+.+...
T Consensus 42 L~~Ai~YI~~L~~~~~~l~~e~~~L~~~~~~L~~~l~~ 79 (83)
T 1nkp_B 42 LDKATEYIQYMRRKNHTHQQDIDDLKRQNALLEQQVRA 79 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56777889999988888888889999999888876543
No 37
>3onj_A T-snare VTI1; helix, HABC, protein transport; 1.92A {Saccharomyces cerevisiae} PDB: 3onl_C
Probab=44.22 E-value=57 Score=25.84 Aligned_cols=48 Identities=13% Similarity=0.185 Sum_probs=34.9
Q ss_pred HHHHHhhhhhhhhhHHHHHHHHHHHHHHHHH---HHHHHHHH-------HHHHH-HHhh
Q 018377 272 EELKLKLNVMDSQLREAEHTIRKLMEARKLA---TREKDMLK-------HELEV-LRRK 319 (357)
Q Consensus 272 ~~l~~k~~~~~~~~~ea~~~i~kl~ee~~~~---~~~~~~L~-------~El~~-lr~~ 319 (357)
++.|..+...+..+.||..+|..+.-|-++. ..++.+++ .+|.. |++.
T Consensus 30 e~Rk~~i~~ie~~ldEA~ell~qMelE~~~~~~p~~~R~~~~~klr~Yk~dl~~~lk~~ 88 (97)
T 3onj_A 30 SQRNTTLKHVEQQQDELFDLLDQMDVEVNNSIGDASERATYKAKLREWKKTIQSDIKRP 88 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHTHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4677788889999999999999998888776 24454444 55555 5543
No 38
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=44.21 E-value=56 Score=25.35 Aligned_cols=40 Identities=25% Similarity=0.260 Sum_probs=25.3
Q ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018377 278 LNVMDSQLREAEHTIRKLMEARKLATREKDMLKHELEVLR 317 (357)
Q Consensus 278 ~~~~~~~~~ea~~~i~kl~ee~~~~~~~~~~L~~El~~lr 317 (357)
+..-.+.+..-...|..|..+-..--.+.+.||-||+.+|
T Consensus 28 L~~K~eELr~kd~~I~eLEk~L~ekd~eI~~LqseLDKfr 67 (72)
T 3nmd_A 28 LQEKIEELRQRDALIDELELELDQKDELIQMLQNELDKYR 67 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3344444555566676666665555566678888888775
No 39
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=43.44 E-value=39 Score=26.76 Aligned_cols=42 Identities=14% Similarity=0.180 Sum_probs=30.3
Q ss_pred hhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 018377 277 KLNVMDSQLREAEHTIRKLMEARKLATREKDMLKHELEVLRR 318 (357)
Q Consensus 277 k~~~~~~~~~ea~~~i~kl~ee~~~~~~~~~~L~~El~~lr~ 318 (357)
++.+.+.++.+...-|.+|+.++..--.+...|++.|.+|..
T Consensus 4 ~~~~~~~~~~~~~~~l~~L~~~~~~l~~~i~~l~~~l~~l~~ 45 (112)
T 1l8d_A 4 LLEELETKKTTIEEERNEITQRIGELKNKIGDLKTAIEELKK 45 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 344555566777777788887777777788888888887754
No 40
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=42.70 E-value=1.1e+02 Score=24.08 Aligned_cols=49 Identities=12% Similarity=0.231 Sum_probs=30.7
Q ss_pred hHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 018377 270 DFEELKLKLNVMDSQLREAEHTIRKLMEARKLATREKDMLKHELEVLRR 318 (357)
Q Consensus 270 d~~~l~~k~~~~~~~~~ea~~~i~kl~ee~~~~~~~~~~L~~El~~lr~ 318 (357)
-++=|+..+.+++.|-.....-..-++..|..-.+|+++|++|......
T Consensus 21 tI~lLqmEieELKekN~~L~~e~~e~~~~~~~L~~en~qLk~E~~~wq~ 69 (81)
T 2jee_A 21 TITLLQMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQNGWQE 69 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH
Confidence 3444555556666665555555556666666677788888888765543
No 41
>3t97_C Nuclear pore glycoprotein P62; nucleoporin, coiled-coil, nuclear pore complex, central TRAN channel, alpha helical proteins, triple helix; 2.80A {Rattus norvegicus}
Probab=42.25 E-value=61 Score=24.41 Aligned_cols=40 Identities=20% Similarity=0.263 Sum_probs=33.2
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 018377 280 VMDSQLREAEHTIRKLMEARKLATREKDMLKHELEVLRRK 319 (357)
Q Consensus 280 ~~~~~~~ea~~~i~kl~ee~~~~~~~~~~L~~El~~lr~~ 319 (357)
..+..|-+-..-|++|.++-..+-++.+.|-|+|+++-..
T Consensus 2 ~WD~~LveNgekI~~L~~~v~~~e~~Q~~ldq~Ld~Ie~Q 41 (64)
T 3t97_C 2 AWDRTLIENGEKITSLHREVEKVKLDQKRLDQELDFILSQ 41 (64)
T ss_dssp -CTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455677778899999999999999999999999987653
No 42
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=41.57 E-value=50 Score=41.10 Aligned_cols=54 Identities=24% Similarity=0.304 Sum_probs=45.0
Q ss_pred hhhHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 018377 268 AKDFEELKLKLNVMDSQLREAEHTIRKLMEARKLATREKDMLKHELEVLRRKSN 321 (357)
Q Consensus 268 ~~d~~~l~~k~~~~~~~~~ea~~~i~kl~ee~~~~~~~~~~L~~El~~lr~~~~ 321 (357)
.+.....+.+|++.+.++.+.+.-|.+|+++-..+++|+++|++|++...++-.
T Consensus 2020 e~~l~~~~~~L~~~~~~L~~le~~l~~L~~~~~~~~~ek~~L~~e~~~~~~kl~ 2073 (3245)
T 3vkg_A 2020 ENAANELKLKQDEIVATITALEKSIATYKEEYATLIRETEQIKTESSKVKNKVD 2073 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555666788888888888899999999999999999999999998877644
No 43
>4emc_A Monopolin complex subunit CSM1; RWD domain, kinetochore-binding, kinetoch replication-replication complex; 3.05A {Saccharomyces cerevisiae} PDB: 3n7n_A 3n4x_A
Probab=40.53 E-value=26 Score=31.84 Aligned_cols=38 Identities=16% Similarity=0.296 Sum_probs=16.5
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 018377 281 MDSQLREAEHTIRKLMEARKLATREKDMLKHELEVLRR 318 (357)
Q Consensus 281 ~~~~~~ea~~~i~kl~ee~~~~~~~~~~L~~El~~lr~ 318 (357)
++++++.|..+|++|.-|...-.+|.+..++|+..|++
T Consensus 11 ~q~ql~~ad~LV~~L~~En~~L~~ql~~k~~ei~~L~~ 48 (190)
T 4emc_A 11 VKQQIDSADLLVANLVNENFVLSEKLDTKATEIKQLQK 48 (190)
T ss_dssp ---------CHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566777777777776655555555554444444444
No 44
>2w6a_A ARF GTPase-activating protein GIT1; PIX, zinc, signaling protein, CAT-1, cytoplasm, ANK repeat, coiled-coil, zinc-finger, metal-binding; 1.40A {Rattus norvegicus}
Probab=40.20 E-value=90 Score=23.55 Aligned_cols=47 Identities=23% Similarity=0.251 Sum_probs=23.3
Q ss_pred HHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018377 271 FEELKLKLNVMDSQLREAEHTIRKLMEARKLATREKDMLKHELEVLR 317 (357)
Q Consensus 271 ~~~l~~k~~~~~~~~~ea~~~i~kl~ee~~~~~~~~~~L~~El~~lr 317 (357)
+=|+|.-|...|.|...--.+=..|.+|-|.--.+.++||.|=--||
T Consensus 15 ylevK~ALaaSeAkiQQLmkVN~~ls~Elr~mQ~~lq~LQsen~~Lr 61 (63)
T 2w6a_A 15 YLELKKALATSEAKVQQLMKVNSSLSDELRKLQREIHKLQAENLQLR 61 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHHHhHhhhHHHHHHHHHHHHHHhhhhhhc
Confidence 44455545544444444444444445555555455555555555554
No 45
>4h22_A Leucine-rich repeat flightless-interacting protei; nucleic acid sensor, transcription; 2.89A {Homo sapiens}
Probab=39.41 E-value=1.6e+02 Score=24.26 Aligned_cols=57 Identities=14% Similarity=0.193 Sum_probs=34.1
Q ss_pred HhhhHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccc
Q 018377 267 LAKDFEELKLKLNVMDSQLREAEHTIRKLMEARKLATREKDMLKHELEVLRRKSNLR 323 (357)
Q Consensus 267 ~~~d~~~l~~k~~~~~~~~~ea~~~i~kl~ee~~~~~~~~~~L~~El~~lr~~~~~~ 323 (357)
+.=-++-||.++.++++.+.+...-.....-|-..-.+..+.|+.+++.||.....|
T Consensus 28 l~YqVdlLKD~LEe~eE~~aql~Re~~eK~re~e~~Kr~~~~L~~~~~~lk~~L~qR 84 (103)
T 4h22_A 28 FMYQVDTLKDMLLELEEQLAESRRQYEEKNKEFEREKHAHSILQFQFAEVKEALKQR 84 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455566666666666665544443334444455566778888888888665544
No 46
>1wt6_A Myotonin-protein kinase; coiled-coil, kinase activation, DMPK, molecular replacement, transferase; 1.60A {Homo sapiens}
Probab=39.18 E-value=71 Score=25.33 Aligned_cols=34 Identities=35% Similarity=0.446 Sum_probs=17.4
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 018377 280 VMDSQLREAEHTIRKLMEARKLATREKDMLKHELEVLRRKS 320 (357)
Q Consensus 280 ~~~~~~~ea~~~i~kl~ee~~~~~~~~~~L~~El~~lr~~~ 320 (357)
..+++|.||++-...| ..+..+|+.+|+.||..+
T Consensus 42 ~~eskL~eae~rn~eL-------~~e~~~l~~~~eelq~~~ 75 (81)
T 1wt6_A 42 NFASQLREAEARNRDL-------EAHVRQLQERMELLQAEG 75 (81)
T ss_dssp HHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHccc
Confidence 4445555555444444 234566666666666443
No 47
>1nkp_A C-MYC, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1
Probab=39.16 E-value=60 Score=25.40 Aligned_cols=36 Identities=25% Similarity=0.338 Sum_probs=24.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 018377 285 LREAEHTIRKLMEARKLATREKDMLKHELEVLRRKS 320 (357)
Q Consensus 285 ~~ea~~~i~kl~ee~~~~~~~~~~L~~El~~lr~~~ 320 (357)
|..|-.-|..|.++.....++.+.|+++-..|+++.
T Consensus 47 L~~A~~YI~~L~~~~~~l~~~~~~L~~~n~~L~~rl 82 (88)
T 1nkp_A 47 LKKATAYILSVQAEEQKLISEEDLLRKRREQLKHKL 82 (88)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556677788887777777666666776666666553
No 48
>3m91_A Proteasome-associated ATPase; coil COIL alpha helix, ATP-binding, chaperone, nucleotide-BI proteasome, S-nitrosylation; 1.80A {Mycobacterium tuberculosis} PDB: 3m9h_A
Probab=37.78 E-value=82 Score=22.74 Aligned_cols=37 Identities=24% Similarity=0.306 Sum_probs=25.1
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018377 280 VMDSQLREAEHTIRKLMEARKLATREKDMLKHELEVL 316 (357)
Q Consensus 280 ~~~~~~~ea~~~i~kl~ee~~~~~~~~~~L~~El~~l 316 (357)
+++.++....+-=.||.+.-+.|-+|..+|+.||+-|
T Consensus 13 ~l~~~l~~L~~rN~rL~~~L~~AR~el~~Lkeele~L 49 (51)
T 3m91_A 13 QLEARIDSLAARNSKLMETLKEARQQLLALREEVDRL 49 (51)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3444444444455666777777888888888888866
No 49
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=37.42 E-value=1.2e+02 Score=25.05 Aligned_cols=44 Identities=23% Similarity=0.358 Sum_probs=24.8
Q ss_pred HHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018377 273 ELKLKLNVMDSQLREAEHTIRKLMEARKLATREKDMLKHELEVL 316 (357)
Q Consensus 273 ~l~~k~~~~~~~~~ea~~~i~kl~ee~~~~~~~~~~L~~El~~l 316 (357)
+|-.++..+.+.+.+-+.....|..+++..-++.+.|+..++-+
T Consensus 80 eLe~~l~el~~rleeeee~~~~L~~~kkkle~e~~~Lk~~led~ 123 (129)
T 2fxo_A 80 QLEAKVKEMNKRLEDEEEMNAELTAKKRKLEDECSELKRDIDDL 123 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555555566666666555555555555555544
No 50
>3htk_A Structural maintenance of chromosomes protein 5; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=35.87 E-value=1.1e+02 Score=21.55 Aligned_cols=44 Identities=20% Similarity=0.232 Sum_probs=21.6
Q ss_pred hhHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018377 269 KDFEELKLKLNVMDSQLREAEHTIRKLMEARKLATREKDMLKHE 312 (357)
Q Consensus 269 ~d~~~l~~k~~~~~~~~~ea~~~i~kl~ee~~~~~~~~~~L~~E 312 (357)
+++.+++.+.+..+..+.++..-+.+++++-+.+..+..+++..
T Consensus 12 ~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~l~~~~~~I~~~k~q 55 (60)
T 3htk_A 12 NQVEELTEKCSLKTDEFLKAKEKINEIFEKLNTIRDEVIKKKNQ 55 (60)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444455555555555555555555554444444443
No 51
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=35.63 E-value=43 Score=33.28 Aligned_cols=10 Identities=30% Similarity=0.428 Sum_probs=4.0
Q ss_pred HHHHHHHHHH
Q 018377 308 MLKHELEVLR 317 (357)
Q Consensus 308 ~L~~El~~lr 317 (357)
.|+||+..+|
T Consensus 562 ~l~~e~~~~~ 571 (597)
T 3oja_B 562 ELRQETSLKR 571 (597)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 3334444333
No 52
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=34.91 E-value=1.1e+02 Score=25.18 Aligned_cols=47 Identities=19% Similarity=0.210 Sum_probs=36.7
Q ss_pred HHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 018377 274 LKLKLNVMDSQLREAEHTIRKLMEARKLATREKDMLKHELEVLRRKS 320 (357)
Q Consensus 274 l~~k~~~~~~~~~ea~~~i~kl~ee~~~~~~~~~~L~~El~~lr~~~ 320 (357)
|..+-..++.++.++..-+....+....-..++.+|++++.-|++..
T Consensus 74 L~~~k~eLe~~l~el~~rleeeee~~~~L~~~kkkle~e~~~Lk~~l 120 (129)
T 2fxo_A 74 LIKNKIQLEAKVKEMNKRLEDEEEMNAELTAKKRKLEDECSELKRDI 120 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444677788888877777777777788889999999999998764
No 53
>1vcs_A Vesicle transport through interaction with T- snares homolog 1A; HABC domain, VTI1, UP and DOWN three helix bundle, LEFT-handed twist; NMR {Mus musculus} SCOP: a.47.2.1
Probab=34.48 E-value=81 Score=25.19 Aligned_cols=28 Identities=21% Similarity=0.245 Sum_probs=22.2
Q ss_pred HHHHhhhhhhhhhHHHHHHHHHHHHHHH
Q 018377 273 ELKLKLNVMDSQLREAEHTIRKLMEARK 300 (357)
Q Consensus 273 ~l~~k~~~~~~~~~ea~~~i~kl~ee~~ 300 (357)
+.|..+...+..+.||..+|..+.-|-+
T Consensus 35 erk~~i~~ie~~l~EA~ell~qMelE~r 62 (102)
T 1vcs_A 35 EKKQMVANVEKQLEEARELLEQMDLEVR 62 (102)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556677788889999999999887755
No 54
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=34.37 E-value=1.2e+02 Score=23.13 Aligned_cols=48 Identities=15% Similarity=0.118 Sum_probs=35.1
Q ss_pred hhHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018377 269 KDFEELKLKLNVMDSQLREAEHTIRKLMEARKLATREKDMLKHELEVL 316 (357)
Q Consensus 269 ~d~~~l~~k~~~~~~~~~ea~~~i~kl~ee~~~~~~~~~~L~~El~~l 316 (357)
.|..+...++..++.++.+++.-..++-+|-.+-.+..+.|+.||+-.
T Consensus 13 ~e~d~a~~~~~~~e~~l~~~e~~~~~~E~ev~~L~kKiq~lE~eld~~ 60 (81)
T 1ic2_A 13 LDKENALDRAEQAEADKKAAEERSKQLEDELVALQKKLKGTEDELDKY 60 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Confidence 455556666777778888888777777777777777777777777654
No 55
>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A
Probab=34.15 E-value=83 Score=24.94 Aligned_cols=38 Identities=24% Similarity=0.427 Sum_probs=29.7
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 018377 282 DSQLREAEHTIRKLMEARKLATREKDMLKHELEVLRRK 319 (357)
Q Consensus 282 ~~~~~ea~~~i~kl~ee~~~~~~~~~~L~~El~~lr~~ 319 (357)
+..+.+++..|..++-|+....-|.+.|+.+++.+|.|
T Consensus 55 e~~i~~Lr~~i~~~~~ek~~l~~e~dnl~~~~~~~k~K 92 (93)
T 3s4r_A 55 EEEMRELRRQVDQLTNDKARVEVERDNLAEDIMRLREK 92 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 45566777788888888888888888888888888764
No 56
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=33.74 E-value=1e+02 Score=30.29 Aligned_cols=50 Identities=22% Similarity=0.355 Sum_probs=37.4
Q ss_pred hhhHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018377 268 AKDFEELKLKLNVMDSQLREAEHTIRKLMEARKLATREKDMLKHELEVLR 317 (357)
Q Consensus 268 ~~d~~~l~~k~~~~~~~~~ea~~~i~kl~ee~~~~~~~~~~L~~El~~lr 317 (357)
...+.+|+.+...++..+.+++.-+..|.+.-...-+++++|..++..||
T Consensus 9 ~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~rr~l~n~~~elk 58 (403)
T 4etp_A 9 KEKIAALKEKIAALKEKIKDTELGMKELNEILIKEETVRRTLHNELQELR 58 (403)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 34456666677777777777777777777777777788888988888876
No 57
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=33.67 E-value=1.6e+02 Score=22.44 Aligned_cols=43 Identities=21% Similarity=0.290 Sum_probs=16.9
Q ss_pred hhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 018377 277 KLNVMDSQLREAEHTIRKLMEARKLATREKDMLKHELEVLRRK 319 (357)
Q Consensus 277 k~~~~~~~~~ea~~~i~kl~ee~~~~~~~~~~L~~El~~lr~~ 319 (357)
|...++.....|..-...+...-+.+-+...++-+|+.-|.|+
T Consensus 7 Km~~lk~e~d~a~~~~~~~e~~l~~~e~~~~~~E~ev~~L~kK 49 (81)
T 1ic2_A 7 KMQMLKLDKENALDRAEQAEADKKAAEERSKQLEDELVALQKK 49 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 3333333333333333333333333333444444444444443
No 58
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=32.67 E-value=2e+02 Score=23.53 Aligned_cols=57 Identities=28% Similarity=0.346 Sum_probs=0.0
Q ss_pred hHHHHHhhhHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHh
Q 018377 262 ILELKLAKDFEELKLKLNVMDSQLREAEHTIRKLMEARKLAT-------REKDMLKHELEVLRR 318 (357)
Q Consensus 262 ~~~~~~~~d~~~l~~k~~~~~~~~~ea~~~i~kl~ee~~~~~-------~~~~~L~~El~~lr~ 318 (357)
....++-.+++.+|.|+.+--.+-..++.-|..|+..-..+. .+.+-|+.||.+||+
T Consensus 41 leldn~~~~~edfk~KyE~E~~~r~~~E~di~~lrK~lD~~~l~r~dLE~~iesL~eEl~FLKk 104 (119)
T 3ol1_A 41 VERDNLAEDIMRLREKLQEEMLQREEAENTLQSFRQDVDNASLARLDLERKVESLQEEIAFLKK 104 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHHHHHHHHHH
No 59
>3hhm_B NISH2 P85alpha; PI3KCA, PI3K, PIK3R1, phosphatidilynositol 3,4,5- triphosphate, wortmannin, H1047R, ATP-binding, disease mutation, kinase; HET: KWT; 2.80A {Homo sapiens} PDB: 3hiz_B 2rd0_B 4a55_B* 3mtt_A
Probab=32.48 E-value=1.3e+02 Score=29.54 Aligned_cols=62 Identities=15% Similarity=0.276 Sum_probs=49.4
Q ss_pred chhhHHHHHhhhHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 018377 259 AKDILELKLAKDFEELKLKLNVMDSQLREAEHTIRKLMEARKLATREKDMLKHELEVLRRKS 320 (357)
Q Consensus 259 ~~~~~~~~~~~d~~~l~~k~~~~~~~~~ea~~~i~kl~ee~~~~~~~~~~L~~El~~lr~~~ 320 (357)
|+.+....+....+.||+++.++......-+.-+..-.++-+..-++.+.|+=||..|||..
T Consensus 195 ~~~~e~~~~~~n~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~lkp~l~ql~k~r 256 (373)
T 3hhm_B 195 GNEKEIQRIMHNYDKLKSRISEIIDSRRRLEEDLKKQAAEYREIDKRMNSIKPDLIQLRKTR 256 (373)
T ss_dssp TCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cChHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccChHHHHHHHHH
Confidence 34444566777888899999988888777777777778888888888999999999999844
No 60
>1s1c_X RHO-associated, coiled-coil containing protein kinase 1; GTPase, RHO kinase, ROCK, signaling protein; HET: GNP; 2.60A {Homo sapiens} SCOP: h.1.27.1
Probab=32.27 E-value=1.4e+02 Score=23.08 Aligned_cols=47 Identities=19% Similarity=0.195 Sum_probs=31.9
Q ss_pred HhhhHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHH--HHHHHHHHHH
Q 018377 267 LAKDFEELKLKLNVMDSQLREAEHTIRKLMEARKLAT--REKDMLKHEL 313 (357)
Q Consensus 267 ~~~d~~~l~~k~~~~~~~~~ea~~~i~kl~ee~~~~~--~~~~~L~~El 313 (357)
+++|+++|.....++-.++..+..-+.++++|.-.++ +-..+|++|-
T Consensus 4 L~k~i~~l~~E~eel~~klk~~~ee~~~~~eee~~~~~~~lek~L~~E~ 52 (71)
T 1s1c_X 4 LTKDIEILRRENEELTEKMKKAEEEYKLEKEEEISNLKAAFEKNINTER 52 (71)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6678888777777777888888777777776655522 2345666664
No 61
>3q0x_A Centriole protein; centrosome protein, coiled coil mediated dimer, structural P; 3.02A {Chlamydomonas reinhardtii}
Probab=32.14 E-value=85 Score=29.05 Aligned_cols=45 Identities=11% Similarity=0.235 Sum_probs=35.8
Q ss_pred HhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 018377 276 LKLNVMDSQLREAEHTIRKLMEARKLATREKDMLKHELEVLRRKS 320 (357)
Q Consensus 276 ~k~~~~~~~~~ea~~~i~kl~ee~~~~~~~~~~L~~El~~lr~~~ 320 (357)
.+++.+++++..-+.-+.+.++|+++..-+...-+|-+..+|..-
T Consensus 171 ~R~~~lK~kl~~l~~~L~~~~~e~~s~~~~~~~~~~~~~~~~~~~ 215 (228)
T 3q0x_A 171 FRLSEVKGTCHDLSDDLSRTRDDRDSMVAQLAQCRQQLAQLREQY 215 (228)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346666667777777788888899999999999999999998653
No 62
>1ykh_B RNA polymerase II holoenzyme component SRB7; gene regulation; 3.00A {Saccharomyces cerevisiae} SCOP: a.252.1.1
Probab=31.57 E-value=1.4e+02 Score=25.06 Aligned_cols=53 Identities=21% Similarity=0.104 Sum_probs=42.1
Q ss_pred hhhHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 018377 268 AKDFEELKLKLNVMDSQLREAEHTIRKLMEARKLATREKDMLKHELEVLRRKS 320 (357)
Q Consensus 268 ~~d~~~l~~k~~~~~~~~~ea~~~i~kl~ee~~~~~~~~~~L~~El~~lr~~~ 320 (357)
+|+++-|=+.|-+.+.--++-.+.|.+|.+|.+.+-+|+.+.-+|-+.|.++.
T Consensus 70 ~kqIe~LIdsLP~~~~see~Q~~ri~~L~~E~~~~~~el~~~v~e~e~ll~~v 122 (132)
T 1ykh_B 70 TRQINKLIDSLPGVDVSAEEQLRKIDMLQKKLVEVEDEKIEAIKKKEKLMRHV 122 (132)
T ss_dssp HHHHHHHHHHSTTTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 47888888888877766666678899999999888888888888887776653
No 63
>1m1j_C Fibrinogen gamma chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_C
Probab=30.76 E-value=1.1e+02 Score=30.60 Aligned_cols=36 Identities=14% Similarity=0.115 Sum_probs=24.3
Q ss_pred HHHHHhhhHHHHHHhhhhhhhhhHHHHHHHHHHHHH
Q 018377 263 LELKLAKDFEELKLKLNVMDSQLREAEHTIRKLMEA 298 (357)
Q Consensus 263 ~~~~~~~d~~~l~~k~~~~~~~~~ea~~~i~kl~ee 298 (357)
++..|-+|+++|+.-+.+++.+.+++..+|..+..-
T Consensus 32 ~e~~V~~~l~~LE~~l~elsn~ts~v~~Lvk~iq~~ 67 (409)
T 1m1j_C 32 YRLTTDGELLEIEGLLQQATNSTGSIEYLIQHIKTI 67 (409)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 345566777777777777777777777666555543
No 64
>3l4q_C Phosphatidylinositol 3-kinase regulatory subunit beta; PI3K, phosphoinositide-3-kinase, influenza virus, NS1; 2.30A {Bos taurus} PDB: 2v1y_B
Probab=30.52 E-value=1e+02 Score=27.32 Aligned_cols=63 Identities=16% Similarity=0.226 Sum_probs=50.2
Q ss_pred chhhHHHHHhhhHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 018377 259 AKDILELKLAKDFEELKLKLNVMDSQLREAEHTIRKLMEARKLATREKDMLKHELEVLRRKSN 321 (357)
Q Consensus 259 ~~~~~~~~~~~d~~~l~~k~~~~~~~~~ea~~~i~kl~ee~~~~~~~~~~L~~El~~lr~~~~ 321 (357)
|+.+-...+....+-|+++|.++......-..-+....++-+..=++.+.|+=||-.|++...
T Consensus 86 ~~~~E~~~l~~N~e~LksRL~~l~~sk~~L~e~L~~q~~~~relERemnsLKPeL~qL~K~rD 148 (170)
T 3l4q_C 86 GNEKEMQRILLNSERLKSRIAEIHESRTKLEQELRAQASDNREIDKRMNSLKPDLMQLRKIRD 148 (170)
T ss_dssp CCSSSTTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 334434456667788999999998888888888888888888888999999999999998654
No 65
>1uix_A RHO-associated kinase; coiled-coil, transferase; HET: MSE; 1.80A {Bos taurus} SCOP: h.1.27.1
Probab=29.88 E-value=1.7e+02 Score=22.56 Aligned_cols=47 Identities=19% Similarity=0.259 Sum_probs=30.7
Q ss_pred HhhhHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHH----HHHHHHHHHH
Q 018377 267 LAKDFEELKLKLNVMDSQLREAEHTIRKLMEARKLAT----REKDMLKHEL 313 (357)
Q Consensus 267 ~~~d~~~l~~k~~~~~~~~~ea~~~i~kl~ee~~~~~----~~~~~L~~El 313 (357)
+++|+++|.....++-.++.++..-+.++++|.-... +-..+|++|-
T Consensus 2 ~~k~v~~l~~E~eel~~klk~~~ee~~~~~eee~~~~~~k~~lek~L~~E~ 52 (71)
T 1uix_A 2 STSDVANLANEKEELNNKLKEAQEQLSRLKDEEISAAAIKAQFEKQLLTER 52 (71)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567777777677777788888777777776655421 3345566664
No 66
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=29.52 E-value=81 Score=24.05 Aligned_cols=38 Identities=24% Similarity=0.377 Sum_probs=31.9
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 018377 282 DSQLREAEHTIRKLMEARKLATREKDMLKHELEVLRRK 319 (357)
Q Consensus 282 ~~~~~ea~~~i~kl~ee~~~~~~~~~~L~~El~~lr~~ 319 (357)
+..+.+.+.-+..|..+......+++.|++++..|+.+
T Consensus 28 ~~~i~~LE~~v~~le~~~~~l~~en~~Lr~~i~~L~~E 65 (70)
T 1gd2_E 28 EDHLKALETQVVTLKELHSSTTLENDQLRQKVRQLEEE 65 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46677778888899888888889999999999988865
No 67
>1yke_B RNA polymerase II holoenzyme component SRB7; gene regulation; 3.30A {Saccharomyces cerevisiae} SCOP: a.252.1.1
Probab=29.39 E-value=1.4e+02 Score=25.68 Aligned_cols=53 Identities=21% Similarity=0.100 Sum_probs=39.7
Q ss_pred hhhHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 018377 268 AKDFEELKLKLNVMDSQLREAEHTIRKLMEARKLATREKDMLKHELEVLRRKS 320 (357)
Q Consensus 268 ~~d~~~l~~k~~~~~~~~~ea~~~i~kl~ee~~~~~~~~~~L~~El~~lr~~~ 320 (357)
+|+++-|=+.|-+.+.--++-.+.|.+|.+|.+.+-+|+++.-+|-+.|.++.
T Consensus 70 akqIe~LIdsLPg~~~seeeQ~~ri~~Le~E~~~~~~el~~~v~eae~ll~~v 122 (151)
T 1yke_B 70 TRQINKLIDSLPGVDVSAEEQLRKIDMLQKKLVEVEDEKIEAIKKKEKLLRHV 122 (151)
T ss_dssp HHHHHHHHHHCTTSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57888888878777766666677888888888888777777777777666543
No 68
>1m1j_B Fibrinogen beta chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_B*
Probab=29.36 E-value=1.4e+02 Score=30.25 Aligned_cols=33 Identities=9% Similarity=0.099 Sum_probs=26.8
Q ss_pred HHHHHhhhHHHHHHhhhhhhhhhHHHHHHHHHH
Q 018377 263 LELKLAKDFEELKLKLNVMDSQLREAEHTIRKL 295 (357)
Q Consensus 263 ~~~~~~~d~~~l~~k~~~~~~~~~ea~~~i~kl 295 (357)
++.+|-+|+++|+.++..+..+..+|...|..|
T Consensus 94 ~q~~V~~~LqeLe~~l~~lsn~Ts~~~~~i~~I 126 (464)
T 1m1j_B 94 QEKTVKPVLRDLKDRVAKFSDTSTTMYQYVNMI 126 (464)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhHhHHHHHHHHHHHHhhhhhHHHHHHHHH
Confidence 456788999999999999998888887765444
No 69
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=28.93 E-value=1.8e+02 Score=26.36 Aligned_cols=24 Identities=13% Similarity=0.159 Sum_probs=10.4
Q ss_pred HhhhHHHHHHhhhhhhhhhHHHHH
Q 018377 267 LAKDFEELKLKLNVMDSQLREAEH 290 (357)
Q Consensus 267 ~~~d~~~l~~k~~~~~~~~~ea~~ 290 (357)
+.++++.++.+...++..+.++..
T Consensus 95 L~kEie~~~~~i~~lE~eile~~e 118 (256)
T 3na7_A 95 LNIEEDIAKERSNQANREIENLQN 118 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444333
No 70
>3hn9_A Lamin-B1; structural genomics, structural genomics consortium, SGC, acetylation, chromosomal rearrangement, coiled coil, intermediate filament; 2.00A {Homo sapiens} PDB: 3umn_A 2kpw_A
Probab=28.89 E-value=66 Score=26.69 Aligned_cols=40 Identities=18% Similarity=0.214 Sum_probs=28.8
Q ss_pred EEEEEcCCCCeEE---EEEeeCCCC---cEEEeCCcceeCCCCeEEE
Q 018377 26 VIQLGNKSDQCVA---FKVKTTSPK---KYCVRPNVSIIKPKAISDF 66 (357)
Q Consensus 26 ~LtLtN~Sd~~VA---FKVKTTsPk---kY~VRPn~GvI~P~ss~~V 66 (357)
.++|.|++++.+. |+++-...+ .|.. |..=+|.||.++.|
T Consensus 26 fV~L~N~s~~~~~L~gW~l~r~v~~~~~~y~F-p~~~~L~pg~~vtV 71 (123)
T 3hn9_A 26 FIRLKNTSEQDQPMGGWEMIRKIGDTSVSYKY-TSRYVLKAGQTVTI 71 (123)
T ss_dssp EEEEEECSSSCEECTTCEEEEEETTEEEEEEC-CTTCEECTTCEEEE
T ss_pred EEEEEECCCCceecCCcEEEEEeCCCceEEEc-CCCcEECCCCEEEE
Confidence 7899999887765 777755433 3655 55558999999765
No 71
>3ghg_C Fibrinogen gamma chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 1deq_C
Probab=28.47 E-value=1.5e+02 Score=29.77 Aligned_cols=36 Identities=19% Similarity=0.331 Sum_probs=32.0
Q ss_pred HHHHHhhhHHHHHHhhhhhhhhhHHHHHHHHHHHHH
Q 018377 263 LELKLAKDFEELKLKLNVMDSQLREAEHTIRKLMEA 298 (357)
Q Consensus 263 ~~~~~~~d~~~l~~k~~~~~~~~~ea~~~i~kl~ee 298 (357)
++..|-+|+++|+..|..+....++|...|..|+.-
T Consensus 32 ye~~V~~~l~~L~~~l~~isn~Ts~~~~~v~~ik~~ 67 (411)
T 3ghg_C 32 YQTKVDKDLQSLEDILHQVENKTSEVKQLIKAIQLT 67 (411)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hccchhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHh
Confidence 567888999999999999999999999998888764
No 72
>3hd7_B Syntaxin-1A; membrane protein, coiled-coil, 4-helical bundle, cell juncti cytoplasmic vesicle, membrane, phosphoprotein; HET: GGG; 3.40A {Rattus norvegicus} PDB: 3hd9_B 3ipd_B
Probab=27.87 E-value=1.9e+02 Score=23.22 Aligned_cols=32 Identities=6% Similarity=-0.018 Sum_probs=15.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018377 285 LREAEHTIRKLMEARKLATREKDMLKHELEVL 316 (357)
Q Consensus 285 ~~ea~~~i~kl~ee~~~~~~~~~~L~~El~~l 316 (357)
..+=..+|.....--..+...-++=.+||..-
T Consensus 44 V~eQge~Id~Ie~nv~~a~~~v~~g~~eL~kA 75 (109)
T 3hd7_B 44 VESQGEMIDRIEYNVEHAVDYVERAVSDTKKA 75 (109)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444455555444444444455555666543
No 73
>3swk_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural; 1.70A {Homo sapiens}
Probab=27.11 E-value=1.5e+02 Score=23.12 Aligned_cols=53 Identities=30% Similarity=0.393 Sum_probs=33.5
Q ss_pred HHhhhHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHh
Q 018377 266 KLAKDFEELKLKLNVMDSQLREAEHTIRKLMEARKLAT-------REKDMLKHELEVLRR 318 (357)
Q Consensus 266 ~~~~d~~~l~~k~~~~~~~~~ea~~~i~kl~ee~~~~~-------~~~~~L~~El~~lr~ 318 (357)
++..+++.+|.|+.+=-..-.+|+.-|..|+..-..+. .+.+-|+.|+.+||+
T Consensus 25 n~~~~~edfk~KyE~E~~~R~~~E~d~~~LrkdvD~a~l~r~dLE~kvesL~eEl~fLkk 84 (86)
T 3swk_A 25 NLAEDIMRLREKLQEEMLQREEAENTLQSFRQDVDNASLARLDLERKVESLQEEIAFLKK 84 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34455566666665544555566777777766655444 345678888888875
No 74
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=26.55 E-value=1.2e+02 Score=33.82 Aligned_cols=26 Identities=4% Similarity=0.201 Sum_probs=12.7
Q ss_pred hhhhhhhhhHHHHHHHHHHHHHHHHH
Q 018377 277 KLNVMDSQLREAEHTIRKLMEARKLA 302 (357)
Q Consensus 277 k~~~~~~~~~ea~~~i~kl~ee~~~~ 302 (357)
+...++.++.+.+..+.++..|+...
T Consensus 985 ~v~~L~~e~~~l~~~~~~~~ke~~~l 1010 (1080)
T 2dfs_A 985 RVLSLQEEIAKLRKELHQTQTEKKTI 1010 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444555555555555554443
No 75
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}
Probab=26.01 E-value=1.8e+02 Score=22.92 Aligned_cols=37 Identities=16% Similarity=0.226 Sum_probs=15.1
Q ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018377 278 LNVMDSQLREAEHTIRKLMEARKLATREKDMLKHELE 314 (357)
Q Consensus 278 ~~~~~~~~~ea~~~i~kl~ee~~~~~~~~~~L~~El~ 314 (357)
...++.++.+++.--.++-+|-.+-.+..+.|+.|++
T Consensus 25 ae~~e~~~k~~e~~~~~~E~ei~sL~kKiq~lE~eld 61 (101)
T 3u59_A 25 AEQAEADKKQAEDRCKQLEEEQQGLQKKLKGTEDEVE 61 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444344444443333333444444443
No 76
>2wg5_A General control protein GCN4, proteasome-activating nucleotidase; transcription hydrolase complex, nucleotide-binding; 2.10A {Saccharomyces cerevisiae} PDB: 2wg6_A
Probab=25.36 E-value=69 Score=25.93 Aligned_cols=26 Identities=19% Similarity=0.238 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Q 018377 293 RKLMEARKLATREKDMLKHELEVLRR 318 (357)
Q Consensus 293 ~kl~ee~~~~~~~~~~L~~El~~lr~ 318 (357)
..|+++++..-+|.++|+.|++.|+.
T Consensus 10 ~~l~~~~~~l~~~i~~lkeel~~L~~ 35 (109)
T 2wg5_A 10 KQLEDKVEELLSKNYHLENEVARLRS 35 (109)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 45788888888999999999999984
No 77
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=23.90 E-value=2.3e+02 Score=25.60 Aligned_cols=40 Identities=13% Similarity=0.053 Sum_probs=16.1
Q ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018377 278 LNVMDSQLREAEHTIRKLMEARKLATREKDMLKHELEVLR 317 (357)
Q Consensus 278 ~~~~~~~~~ea~~~i~kl~ee~~~~~~~~~~L~~El~~lr 317 (357)
+..++..+.....-|.++..+....-.+..++..+++.++
T Consensus 34 l~~le~~~~~l~~~~~~~~~~l~d~~~~~~~~e~~i~~~~ 73 (256)
T 3na7_A 34 LDKALNDKEAKNKAILNLEEEKLALKLQVSKNEQTLQDTN 73 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333444444444444444444444444444333
No 78
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=23.70 E-value=2.1e+02 Score=22.69 Aligned_cols=39 Identities=8% Similarity=0.127 Sum_probs=19.1
Q ss_pred hhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018377 277 KLNVMDSQLREAEHTIRKLMEARKLATREKDMLKHELEV 315 (357)
Q Consensus 277 k~~~~~~~~~ea~~~i~kl~ee~~~~~~~~~~L~~El~~ 315 (357)
+...++.++.+++.--.++-+|-.+-.+.++.|..||+.
T Consensus 24 rae~~e~~~k~~e~~~~~~E~Ei~sL~kk~~~lE~eld~ 62 (101)
T 3u1c_A 24 RAEQAEADKKAAEERSKQLEDDIVQLEKQLRVTEDSRDQ 62 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444555555544455555555553
No 79
>4fm3_A Uncharacterized hypothetical protein; PF14346 family protein, DUF4398, structural genomics, joint for structural genomics, JCSG; HET: PG4; 2.47A {Pseudomonas aeruginosa}
Probab=23.37 E-value=1.2e+02 Score=24.69 Aligned_cols=36 Identities=17% Similarity=0.194 Sum_probs=22.7
Q ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018377 278 LNVMDSQLREAEHTIRKLMEARKLATREKDMLKHEL 313 (357)
Q Consensus 278 ~~~~~~~~~ea~~~i~kl~ee~~~~~~~~~~L~~El 313 (357)
-++++..|.||++...|=.+.-...-+-.+-|+|||
T Consensus 59 qAe~DArLAeAka~~~Ka~~~~~el~~~I~~LrqEl 94 (98)
T 4fm3_A 59 QAELDARLAESKVLTQKSKDQLGELDKSLKRLRKQL 94 (98)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 356778888888877776555544444445555554
No 80
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=22.28 E-value=2.3e+02 Score=28.03 Aligned_cols=17 Identities=18% Similarity=0.239 Sum_probs=6.2
Q ss_pred hhhhHHHHHHHHHHHHH
Q 018377 282 DSQLREAEHTIRKLMEA 298 (357)
Q Consensus 282 ~~~~~ea~~~i~kl~ee 298 (357)
+.++++.+..+..|++|
T Consensus 550 e~~~~~~~~~~~~l~~e 566 (597)
T 3oja_B 550 EKQLDNKRAKQAELRQE 566 (597)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHhhhhhHHHHHHHH
Confidence 33333333333333333
No 81
>2wt7_B Transcription factor MAFB; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 2wty_A* 1k1v_A
Probab=22.26 E-value=1.3e+02 Score=24.12 Aligned_cols=35 Identities=17% Similarity=0.252 Sum_probs=16.9
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018377 280 VMDSQLREAEHTIRKLMEARKLATREKDMLKHELE 314 (357)
Q Consensus 280 ~~~~~~~ea~~~i~kl~ee~~~~~~~~~~L~~El~ 314 (357)
+++....+-..-+..|.+|.....+|++.+++-++
T Consensus 52 ~LE~e~~~L~~e~~~L~~e~~~~~~e~d~~k~k~~ 86 (90)
T 2wt7_B 52 HLENEKTQLIQQVEQLKQEVSRLARERDAYKVKSE 86 (90)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444455555555555555555554443
No 82
>3ghg_B Fibrinogen beta chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_B* 1deq_B 2a45_H*
Probab=22.05 E-value=1.5e+02 Score=30.11 Aligned_cols=38 Identities=11% Similarity=0.123 Sum_probs=33.5
Q ss_pred HHHHHhhhHHHHHHhhhhhhhhhHHHHHHHHHHHHHHH
Q 018377 263 LELKLAKDFEELKLKLNVMDSQLREAEHTIRKLMEARK 300 (357)
Q Consensus 263 ~~~~~~~d~~~l~~k~~~~~~~~~ea~~~i~kl~ee~~ 300 (357)
++..|-+|+++|+..|..+....++|...|..|+..-+
T Consensus 89 ye~~V~~dl~~Le~~l~~isn~Ts~a~~~v~~ik~s~~ 126 (461)
T 3ghg_B 89 QERPIRNSVDELNNNVEAVSQTSSSSFQYMYLLKDLWQ 126 (461)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHH
T ss_pred cccchhhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhc
Confidence 57789999999999999999999999999988877533
No 83
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=21.75 E-value=1.8e+02 Score=28.65 Aligned_cols=50 Identities=12% Similarity=0.102 Sum_probs=34.2
Q ss_pred hhhHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018377 268 AKDFEELKLKLNVMDSQLREAEHTIRKLMEARKLATREKDMLKHELEVLR 317 (357)
Q Consensus 268 ~~d~~~l~~k~~~~~~~~~ea~~~i~kl~ee~~~~~~~~~~L~~El~~lr 317 (357)
-..+.+++.+...++.+..+..+.+..++|+-...-.++++|..++.-||
T Consensus 9 ~~el~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~rr~l~n~~~~l~ 58 (412)
T 3u06_A 9 STEVVHLRQRTEELLRCNEQQAAELETCKEQLFQSNMERKELHNTVMDLR 58 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 34556666666677777777777777777666666677777777777665
No 84
>2huh_A Putative DNA mismatch repair protein; structural genomics, J center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 1.54A {Bacteroides thetaiotaomicron} SCOP: b.7.5.1
Probab=21.17 E-value=1.6e+02 Score=25.65 Aligned_cols=65 Identities=17% Similarity=0.181 Sum_probs=50.2
Q ss_pred EEEEEEEcCCCCeEEEEEeeCCCCcEEEeCCcceeCCCCeEEEE-EEeccCCCCCCCCCCCceEEEEEEEeCCC
Q 018377 24 TCVIQLGNKSDQCVAFKVKTTSPKKYCVRPNVSIIKPKAISDFT-VTMQAQRVAPPDLQCKDKFLIQGIVVPFG 96 (357)
Q Consensus 24 sc~LtLtN~Sd~~VAFKVKTTsPkkY~VRPn~GvI~P~ss~~V~-VTmqa~~e~P~d~q~kDKFLVQSv~v~~g 96 (357)
.-.+-|.|.|+.++.|-.-+-..+.|.++ ..|.|+|+..+-|. +.+.. +..--+|.||-+.-..+
T Consensus 29 ~fe~YlVNdSNy~l~f~y~~~~~~~w~l~-~~G~iePntk~~ieef~~~e-------ln~~~~~~vQ~layK~~ 94 (147)
T 2huh_A 29 PFEAYLVNDSNYYLYYTYLSAEGKAWNNR-SHGLVEPNTKLLLEEFTKDV-------LNEMERVAVQLIAFKDG 94 (147)
T ss_dssp CEEEEEEECSSSEEEEEEEEEETTEEEEE-EEEEECTTEEEEEEEECGGG-------GGGCSSEEEEEEEECSS
T ss_pred ceEEEEEeCCCcEEEEEEEEeeCCeEEEE-EeeEECCCcEEEEEeeChhH-------hcCCceEEEEEEEEcCC
Confidence 44778999999999999988888888887 67999999988874 33332 22355788888887663
No 85
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=20.85 E-value=1.8e+02 Score=23.76 Aligned_cols=32 Identities=16% Similarity=0.088 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 018377 291 TIRKLMEARKLATREKDMLKHELEVLRRKSNL 322 (357)
Q Consensus 291 ~i~kl~ee~~~~~~~~~~L~~El~~lr~~~~~ 322 (357)
-+.+|+++-.+--+|+++|++|.+.|.-+--.
T Consensus 13 ~~~~lr~ei~~Le~E~~rLr~~~~~LE~~Le~ 44 (100)
T 1go4_E 13 EADTLRLKVEELEGERSRLEEEKRMLEAQLER 44 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45556666666666777777776666544433
No 86
>3idu_A Uncharacterized protein; all beta-protein, structural genomics, PSI-2, protein structure initiative; 1.70A {Pyrococcus furiosus} PDB: 2kl6_A
Probab=20.84 E-value=2.1e+02 Score=23.70 Aligned_cols=69 Identities=17% Similarity=0.130 Sum_probs=47.7
Q ss_pred CCceeEEEEEEEcCCCC-eEEEEEeeCCCCcEEEeCCcceeCCCCeEEEEEEeccCCCCCCCCCCCceEEEEEEEeCCC
Q 018377 19 VKKQSTCVIQLGNKSDQ-CVAFKVKTTSPKKYCVRPNVSIIKPKAISDFTVTMQAQRVAPPDLQCKDKFLIQGIVVPFG 96 (357)
Q Consensus 19 ~~kq~sc~LtLtN~Sd~-~VAFKVKTTsPkkY~VRPn~GvI~P~ss~~V~VTmqa~~e~P~d~q~kDKFLVQSv~v~~g 96 (357)
.++.....++++|.... -=+|+|+=...+.+.-.-..+ |.||++..|.++..+.. ..-+-|...+-+.+
T Consensus 31 ~G~~~ti~vtV~N~G~~~a~~~~V~lyvng~~v~t~~v~-La~G~s~tv~f~~~~~~--------~G~~~v~AvVD~~n 100 (127)
T 3idu_A 31 VNKLAEYEVHVKNLGGIGVPSTKVRVYINGTLYKNWTVS-LGPKEEKVLTFNWTPTQ--------EGMYRINATVDEEN 100 (127)
T ss_dssp TTCCEEEEEEEEECSSSCEEEEEEEEEETTEEEEEEEEE-ECTTCEEEEEEEECCSS--------CEEEEEEEEESTTC
T ss_pred CCCEEEEEEEEEECCCCccCCcEEEEEECCEEEeeEEec-cCCCCeEEEEEEEEcCC--------CcEEEEEEEEcCCC
Confidence 36788999999999764 467888876666655443344 99999999999886421 33455655555543
No 87
>1naf_A ADP-ribosylation factor binding protein GGA1, golgi-localized, gamma EAR-; clathrin-adaptor, GAT domain, helical paper-CLIP, three-helix bundle; 2.80A {Homo sapiens} SCOP: a.7.8.1
Probab=20.37 E-value=1.8e+02 Score=25.39 Aligned_cols=38 Identities=13% Similarity=0.238 Sum_probs=30.3
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 018377 283 SQLREAEHTIRKLMEARKLATREKDMLKHELEVLRRKS 320 (357)
Q Consensus 283 ~~~~ea~~~i~kl~ee~~~~~~~~~~L~~El~~lr~~~ 320 (357)
..|.+|..+|.-+-.+-....++..|++.||+.+|...
T Consensus 32 eDL~~AN~LiK~m~~~d~~r~e~~~k~~seLe~V~~nv 69 (158)
T 1naf_A 32 EDLRAANKLIKEMVQEDQKRMEKISKRVNAIEEVNNNV 69 (158)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHH
Confidence 34788988888877666666899999999999988654
No 88
>3e38_A Two-domain protein containing predicted PHP-like dependent phosphoesterase; structural genomics; 2.20A {Bacteroides vulgatus atcc 8482}
Probab=20.16 E-value=1.2e+02 Score=29.13 Aligned_cols=64 Identities=16% Similarity=0.178 Sum_probs=48.3
Q ss_pred EEEEEEcCCCCeEEEEEeeCCCCcEEEeCCcceeCCCCeEEEEEEeccCCCCCCCCCCCceEEEEEEEeCC
Q 018377 25 CVIQLGNKSDQCVAFKVKTTSPKKYCVRPNVSIIKPKAISDFTVTMQAQRVAPPDLQCKDKFLIQGIVVPF 95 (357)
Q Consensus 25 c~LtLtN~Sd~~VAFKVKTTsPkkY~VRPn~GvI~P~ss~~V~VTmqa~~e~P~d~q~kDKFLVQSv~v~~ 95 (357)
-++.|+|.++- -|.++-+.+..|.+.++.=-|+|+++..+.|.+....+ ...=+|-|.-+.+.+
T Consensus 270 ~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~ 333 (343)
T 3e38_A 270 VTLSITNVTDL--VLKLKKTAHDTLLVYFRDMTLKPHTRYTVRIGFKQGIK-----GGDVNFEVTNFIVAP 333 (343)
T ss_dssp EEEEEEECSSS--CEEEEECSCCTTEECCSEEEECTTEEEEEEEEECTTCC-----CCEEEEEEEEEEEET
T ss_pred eEEEeecCCCc--ceeeeccccccccccCceEEecCCCeEEEEEecccccc-----ceEEEEEeeeeeecC
Confidence 57888888875 57777889999999999999999999999998864321 234466655555443
Done!