BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 018378
(357 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|225461965|ref|XP_002270559.1| PREDICTED: DNA-directed RNA polymerases I and III subunit RPAC1
[Vitis vinifera]
gi|296089944|emb|CBI39763.3| unnamed protein product [Vitis vinifera]
Length = 372
Score = 526 bits (1355), Expect = e-147, Method: Compositional matrix adjust.
Identities = 261/332 (78%), Positives = 297/332 (89%), Gaps = 4/332 (1%)
Query: 20 DLPDVPQ-KLPPHIEFQRTRVQCNLDAPIHTENVMYSGAYASMGVDNSLQLDHFCNNFRV 78
D+PDVP+ +LPPHIE QRTRV CN DAP HTENV YSGAY+SMGVDNSL++D FCNNFRV
Sbjct: 8 DMPDVPKGQLPPHIELQRTRVLCNFDAPTHTENVQYSGAYSSMGVDNSLRMDQFCNNFRV 67
Query: 79 EVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRLG 138
EVIRL++DDMEFD+IGID +IANAFRRILIAELPTMAIEKVLIANNTS++QDEVLAHRLG
Sbjct: 68 EVIRLSEDDMEFDMIGIDPSIANAFRRILIAELPTMAIEKVLIANNTSIVQDEVLAHRLG 127
Query: 139 LIPIIVDPRLFEYMSENDTSNEKNTIVFKLHVLCERGGPRLTVKTNELKWLPNGSELPLE 198
LIPI DPRLF+ +SENDT NEKNTIVF LHV CERGGPRLTVK+NELKWLP+GSE PL
Sbjct: 128 LIPINADPRLFDDLSENDTPNEKNTIVFNLHVRCERGGPRLTVKSNELKWLPHGSEFPLA 187
Query: 199 TK-PDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPML-DITIARLGPGQEIELEAHAVKG 256
T+ S+ +SKP+TYTSFS SQD LPEFS+ I P DI IA+LGPGQEIELEAHAVKG
Sbjct: 188 TENTTSSSTSKPKTYTSFSCSQDSLPEFSDKSIGPKHPDIIIAKLGPGQEIELEAHAVKG 247
Query: 257 IGKTHAKWSPVATAWYRMLPEIVLLEDVEDEDAEKLVKTCPVNVFDIEDIGSGKKRATVA 316
+GKTHAKWSPVATAWYRMLPE+VLL+++EDE AE+LVK CPVNVFDIEDI GKK+ATVA
Sbjct: 248 MGKTHAKWSPVATAWYRMLPEVVLLQEIEDEKAEELVKKCPVNVFDIEDIAKGKKKATVA 307
Query: 317 QPRACTLCRECLRCGEEWEKRVSIRRVKDHFI 348
+PRACTLCREC+R G++W+K V+IRRVK+HFI
Sbjct: 308 RPRACTLCRECIR-GDDWDKHVAIRRVKNHFI 338
>gi|255563568|ref|XP_002522786.1| DNA-directed RNA polymerase I/III subunits, putative [Ricinus
communis]
gi|223538024|gb|EEF39637.1| DNA-directed RNA polymerase I/III subunits, putative [Ricinus
communis]
Length = 374
Score = 504 bits (1299), Expect = e-140, Method: Compositional matrix adjust.
Identities = 256/335 (76%), Positives = 290/335 (86%), Gaps = 10/335 (2%)
Query: 16 FSIWDLPDVPQ-KLPPHIEFQRTRVQCNLDAPIHTENVMYSGAYASMGVDNSLQLDHFCN 74
FSIWDLPDVP +LPPH++ QRTRV C DAPIHT+N++YSGAYAS+GVDNSLQLD F +
Sbjct: 14 FSIWDLPDVPMGQLPPHLQLQRTRVVCKSDAPIHTDNIVYSGAYASIGVDNSLQLDCFRD 73
Query: 75 NFRVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLA 134
NF+VEVI+LTKDDMEFD+IGIDAAIANAFRRILI+ELPTMAIEKVLIANNTS+IQDEVLA
Sbjct: 74 NFKVEVIQLTKDDMEFDMIGIDAAIANAFRRILISELPTMAIEKVLIANNTSLIQDEVLA 133
Query: 135 HRLGLIPIIVDPRLFEYMSENDTSNEKNTIVFKLHVLCERGGPRLTVKTNELKWLPNGSE 194
HRLGLIPI DPRLFEY+S NDT NEKNTIVFKLH C+RG PR TV + ELKWLP GS+
Sbjct: 134 HRLGLIPINADPRLFEYLSANDTPNEKNTIVFKLHASCKRGEPRRTVYSEELKWLPGGSQ 193
Query: 195 LPLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPMLD-ITIARLGPGQEIELEAHA 253
L E++ SKP TYTSF+ QD +P+ P+ P D I +A+LGPGQEIELEAHA
Sbjct: 194 LLKESE---KADSKPSTYTSFTDKQDFIPK----PVSPSEDKIIVAKLGPGQEIELEAHA 246
Query: 254 VKGIGKTHAKWSPVATAWYRMLPEIVLLEDVEDEDAEKLVKTCPVNVFDIEDIGSGKKRA 313
VKG+GKTHAKWSPVATAWYRMLPE+VLLED+EDE AE+L K CPVNVFDIEDIG+GKKRA
Sbjct: 247 VKGLGKTHAKWSPVATAWYRMLPEVVLLEDIEDEIAEELTKKCPVNVFDIEDIGNGKKRA 306
Query: 314 TVAQPRACTLCRECLRCGEEWEKRVSIRRVKDHFI 348
TVA+PRACTLCREC+R G EW+KRVS+RRVKDHFI
Sbjct: 307 TVARPRACTLCRECIR-GGEWDKRVSLRRVKDHFI 340
>gi|15219773|ref|NP_176261.1| RNA polymerase I subunit 43 [Arabidopsis thaliana]
gi|14423464|gb|AAK62414.1|AF386969_1 RNA polymerase subunit (isoform B) [Arabidopsis thaliana]
gi|514324|gb|AAB00529.1| RNA polymerase subunit [Arabidopsis thaliana]
gi|2462755|gb|AAB71974.1| RNA polymerase subunit (isoform B) [Arabidopsis thaliana]
gi|24899667|gb|AAN65048.1| RNA polymerase subunit (isoform B) [Arabidopsis thaliana]
gi|332195585|gb|AEE33706.1| RNA polymerase I subunit 43 [Arabidopsis thaliana]
gi|1586550|prf||2204246B RNA polymerase
Length = 385
Score = 499 bits (1284), Expect = e-138, Method: Compositional matrix adjust.
Identities = 238/342 (69%), Positives = 284/342 (83%), Gaps = 4/342 (1%)
Query: 8 EKKKEAESFSIWDLPDVPQKLPPHIEFQRTRVQCNLDAPIHTENVMYSGAYASMGVDNSL 67
E+K+EA++F+I+DLPDVP LPPH+E QRTRV C D+ IH + +SGAY+SMGVDNS+
Sbjct: 13 EEKREAKNFNIFDLPDVPTGLPPHLELQRTRVVCKKDSNIHPTAITFSGAYSSMGVDNSV 72
Query: 68 QLDHFCNNFRVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSV 127
+L++F +F+V+VI LT+ DM FD+IG+ A IANAFRRIL+AELP+MAIEKV +ANNTSV
Sbjct: 73 RLENFSEDFKVDVISLTETDMVFDMIGVHAGIANAFRRILLAELPSMAIEKVYVANNTSV 132
Query: 128 IQDEVLAHRLGLIPIIVDPRLFEYMSENDTSNEKNTIVFKLHVLCERGGPRLTVKTNELK 187
IQDEVLAHRLGLIPI DPRLFEY+SEND NEKNTIVFKLHV C +G PR V T+ELK
Sbjct: 133 IQDEVLAHRLGLIPIAADPRLFEYLSENDQPNEKNTIVFKLHVKCLKGDPRRKVLTSELK 192
Query: 188 WLPNGSELPLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPML-DITIARLGPGQE 246
WLPNGSEL K ++ P+TYTSF+ SQD PEF+ NPIRP L DI IA+LGPGQE
Sbjct: 193 WLPNGSEL---IKESGGSTTTPKTYTSFNHSQDSFPEFAENPIRPTLKDILIAKLGPGQE 249
Query: 247 IELEAHAVKGIGKTHAKWSPVATAWYRMLPEIVLLEDVEDEDAEKLVKTCPVNVFDIEDI 306
IELEAHAVKGIGKTHAKWSPVATAWYRMLPE+VLL++ E + AE+LVK CP VFDIED+
Sbjct: 250 IELEAHAVKGIGKTHAKWSPVATAWYRMLPEVVLLKEFEGKHAEELVKVCPKKVFDIEDM 309
Query: 307 GSGKKRATVAQPRACTLCRECLRCGEEWEKRVSIRRVKDHFI 348
G G+KRATVA+PR C+LCREC+R G EWE +V +RRVK+HFI
Sbjct: 310 GQGRKRATVARPRDCSLCRECIRDGVEWEDQVDLRRVKNHFI 351
>gi|297840495|ref|XP_002888129.1| ATRPAC43 [Arabidopsis lyrata subsp. lyrata]
gi|297333970|gb|EFH64388.1| ATRPAC43 [Arabidopsis lyrata subsp. lyrata]
Length = 385
Score = 497 bits (1280), Expect = e-138, Method: Compositional matrix adjust.
Identities = 238/342 (69%), Positives = 282/342 (82%), Gaps = 4/342 (1%)
Query: 8 EKKKEAESFSIWDLPDVPQKLPPHIEFQRTRVQCNLDAPIHTENVMYSGAYASMGVDNSL 67
E+K+ A++F+I+DLPDVP LPPH+E QRTR C DAPIH +V+YSGAYASMGVDNS+
Sbjct: 13 EEKQFAKNFNIFDLPDVPTGLPPHLELQRTRAVCKNDAPIHPTSVLYSGAYASMGVDNSV 72
Query: 68 QLDHFCNNFRVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSV 127
+L++F +F+V+VI LT+ M FD+IG+ A IANAFRRIL+AELP+MAIEKV +ANNTSV
Sbjct: 73 RLENFSEDFKVDVISLTETYMVFDMIGVPAGIANAFRRILLAELPSMAIEKVFVANNTSV 132
Query: 128 IQDEVLAHRLGLIPIIVDPRLFEYMSENDTSNEKNTIVFKLHVLCERGGPRLTVKTNELK 187
IQDEVLAHRLGLIPI DPRLFEY+SEND NEKNTIVFKLHV C +G PR V T+ELK
Sbjct: 133 IQDEVLAHRLGLIPIAADPRLFEYLSENDQPNEKNTIVFKLHVKCPKGDPRRKVLTSELK 192
Query: 188 WLPNGSELPLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPML-DITIARLGPGQE 246
WLPNGSEL K ++KP+TYTSFS SQD P F+ NPI P DI IA+LGPGQE
Sbjct: 193 WLPNGSEL---VKESGGLTTKPKTYTSFSHSQDSFPGFAKNPITPSFQDILIAKLGPGQE 249
Query: 247 IELEAHAVKGIGKTHAKWSPVATAWYRMLPEIVLLEDVEDEDAEKLVKTCPVNVFDIEDI 306
IELEAHAVKGIGKTHAKWSPVATAWYRMLPE++LL++ E + AE+LVK CP VFDIED+
Sbjct: 250 IELEAHAVKGIGKTHAKWSPVATAWYRMLPEVILLKEFEGKHAEELVKVCPKKVFDIEDM 309
Query: 307 GSGKKRATVAQPRACTLCRECLRCGEEWEKRVSIRRVKDHFI 348
G G+KRATVA+PR C+LCREC+R G EW K+V +RRVK+HFI
Sbjct: 310 GQGRKRATVARPRDCSLCRECIREGVEWAKQVDLRRVKNHFI 351
>gi|363807500|ref|NP_001242652.1| uncharacterized protein LOC100786622 [Glycine max]
gi|255637183|gb|ACU18922.1| unknown [Glycine max]
Length = 388
Score = 496 bits (1276), Expect = e-138, Method: Compositional matrix adjust.
Identities = 245/334 (73%), Positives = 279/334 (83%), Gaps = 5/334 (1%)
Query: 18 IWDLPDVPQKLPPHIEFQRTRVQCNLDAPIHTENVMYSGAYASMGVDNSLQLDHFCNNFR 77
I L +VP KLPPH+E +TRV CN DAP+HT+ V YSGAYA +GVDNS++LD FC NF+
Sbjct: 23 ILSLDNVPSKLPPHLELFKTRVLCNNDAPVHTDTVQYSGAYAILGVDNSVRLDSFCENFK 82
Query: 78 VEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRL 137
VEV RLT D+EFD+IGID AIANAFRRILIAE+PTMAIE+V IANNTSV+QDEVL+HRL
Sbjct: 83 VEVKRLTDSDIEFDMIGIDPAIANAFRRILIAEVPTMAIERVYIANNTSVVQDEVLSHRL 142
Query: 138 GLIPIIVDPRLFEY-MSENDTSNEKNTIVFKLHVLCERGGPRLTVKTNELKWLPNGSELP 196
GLIPI DPRLFEY + D NEKNTIVFKLHV C+ G PR+TVK+++LKWLPNGSELP
Sbjct: 143 GLIPIRADPRLFEYPENAGDDKNEKNTIVFKLHVRCQVGQPRITVKSDKLKWLPNGSELP 202
Query: 197 LE-TKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIR-PMLDITIARLGPGQEIELEAHAV 254
E KP N SKP+T+TSF+ SQD LPEFSNN I DI +A+LGPGQEIELEAHAV
Sbjct: 203 CEGVKP--NAGSKPKTFTSFTCSQDSLPEFSNNSIGLTYSDIILAKLGPGQEIELEAHAV 260
Query: 255 KGIGKTHAKWSPVATAWYRMLPEIVLLEDVEDEDAEKLVKTCPVNVFDIEDIGSGKKRAT 314
KGIGKTHAKWSPVATAWYRMLPE+VLLE VEDE AE+L CPVNVFDIEDIG GK+RA
Sbjct: 261 KGIGKTHAKWSPVATAWYRMLPEVVLLEAVEDELAEELKNKCPVNVFDIEDIGKGKRRAK 320
Query: 315 VAQPRACTLCRECLRCGEEWEKRVSIRRVKDHFI 348
VA+PR CTLCREC+R G+EWE RVS+RRVK+HFI
Sbjct: 321 VARPRDCTLCRECIRGGKEWEDRVSLRRVKNHFI 354
>gi|224061238|ref|XP_002300385.1| predicted protein [Populus trichocarpa]
gi|222847643|gb|EEE85190.1| predicted protein [Populus trichocarpa]
Length = 390
Score = 496 bits (1276), Expect = e-137, Method: Compositional matrix adjust.
Identities = 237/335 (70%), Positives = 272/335 (81%), Gaps = 4/335 (1%)
Query: 15 SFSIWDLPDVPQ-KLPPHIEFQRTRVQCNLDAPIHTENVMYSGAYASMGVDNSLQLDHFC 73
FS W+L DV + +LPPHI Q TRV C DAP +TE + YSG+YASMGVDNSL+LD F
Sbjct: 25 GFSYWNLKDVERGQLPPHIRKQGTRVYCKPDAPTNTETLQYSGSYASMGVDNSLRLDSFR 84
Query: 74 NNFRVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVL 133
NFR++VI L KD MEFD+IGIDAA+ANAFRRILI+E+PTMAIEKV IANNTSVIQDEVL
Sbjct: 85 ENFRIKVIALDKDKMEFDMIGIDAAVANAFRRILISEVPTMAIEKVFIANNTSVIQDEVL 144
Query: 134 AHRLGLIPIIVDPRLFEYMSENDTSNEKNTIVFKLHVLCERGGPRLTVKTNELKWLPNGS 193
AHRLGLIPI VDPRLFEY+S NDT NEKNTIV KLH C RG PR +V + ELKWLPNGS
Sbjct: 145 AHRLGLIPIKVDPRLFEYLSANDTPNEKNTIVLKLHARCNRGQPRCSVYSQELKWLPNGS 204
Query: 194 ELPLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPMLDITIARLGPGQEIELEAHA 253
E E++ P SKP TYTSFS QD LPEF+ NPI + DI +A+LGPGQEIELEAHA
Sbjct: 205 EFAKESE---KPDSKPSTYTSFSCGQDSLPEFAGNPISTVEDIILAKLGPGQEIELEAHA 261
Query: 254 VKGIGKTHAKWSPVATAWYRMLPEIVLLEDVEDEDAEKLVKTCPVNVFDIEDIGSGKKRA 313
VKG+GKTHAKWSPV TAWYRM PE+VLLE+++ EDAE+L++ CP VFDIED G+ KK+A
Sbjct: 262 VKGMGKTHAKWSPVGTAWYRMFPEVVLLENIKGEDAEELIRKCPSGVFDIEDTGNAKKKA 321
Query: 314 TVAQPRACTLCRECLRCGEEWEKRVSIRRVKDHFI 348
VA RACTLCREC+R EEWEKRV++ RVKDHFI
Sbjct: 322 IVADSRACTLCRECIRGDEEWEKRVALHRVKDHFI 356
>gi|356527169|ref|XP_003532185.1| PREDICTED: DNA-directed RNA polymerases I and III subunit
RPAC1-like [Glycine max]
Length = 393
Score = 495 bits (1274), Expect = e-137, Method: Compositional matrix adjust.
Identities = 244/334 (73%), Positives = 278/334 (83%), Gaps = 5/334 (1%)
Query: 18 IWDLPDVPQKLPPHIEFQRTRVQCNLDAPIHTENVMYSGAYASMGVDNSLQLDHFCNNFR 77
I L +VP KLPPH+E +TRV CN DAP+HT+ V YSGAYA MGVDNS++LD FC NF+
Sbjct: 28 ILSLDNVPSKLPPHLELFKTRVLCNNDAPVHTDTVQYSGAYAIMGVDNSVRLDSFCENFK 87
Query: 78 VEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRL 137
VEV RLT D+EFD+IGID AIANAFRRILIAE+PTMAIE+V IANNTSV+QDEVL+HRL
Sbjct: 88 VEVKRLTDSDIEFDMIGIDPAIANAFRRILIAEVPTMAIERVYIANNTSVVQDEVLSHRL 147
Query: 138 GLIPIIVDPRLFEY-MSENDTSNEKNTIVFKLHVLCERGGPRLTVKTNELKWLPNGSELP 196
GLIPI DPRLFEY + D NEKNTIVFKLHV C+ G PR+TVK+++LKWLPNGSELP
Sbjct: 148 GLIPIRADPRLFEYPENAGDDKNEKNTIVFKLHVRCQVGQPRITVKSDKLKWLPNGSELP 207
Query: 197 LE-TKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIR-PMLDITIARLGPGQEIELEAHAV 254
E KP N SKP+T+TSF+ SQD LPEFSNN I DI +A+LGPGQEIELEAHAV
Sbjct: 208 CEDVKP--NAGSKPKTFTSFTCSQDSLPEFSNNSIGLTYSDIILAKLGPGQEIELEAHAV 265
Query: 255 KGIGKTHAKWSPVATAWYRMLPEIVLLEDVEDEDAEKLVKTCPVNVFDIEDIGSGKKRAT 314
KG GKTHAKWSPVAT WYRMLPE+VLL+DVEDE AE+L CPVNVFDIEDIG GK+RA
Sbjct: 266 KGTGKTHAKWSPVATTWYRMLPEVVLLKDVEDELAEELKNKCPVNVFDIEDIGKGKRRAK 325
Query: 315 VAQPRACTLCRECLRCGEEWEKRVSIRRVKDHFI 348
VA+PR CTLCREC+R G+EWE RVS+RRVK+HFI
Sbjct: 326 VARPRDCTLCRECIRGGKEWEDRVSLRRVKNHFI 359
>gi|449461051|ref|XP_004148257.1| PREDICTED: DNA-directed RNA polymerases I and III subunit
RPAC1-like [Cucumis sativus]
gi|449522768|ref|XP_004168398.1| PREDICTED: DNA-directed RNA polymerases I and III subunit
RPAC1-like [Cucumis sativus]
Length = 391
Score = 483 bits (1244), Expect = e-134, Method: Compositional matrix adjust.
Identities = 249/353 (70%), Positives = 293/353 (83%), Gaps = 7/353 (1%)
Query: 1 MAEREETEKKKEAESFS-IWDLPDVPQKLPPHIEFQRTRVQCNLDAPIHTENVMYSGAYA 59
M+E E ++ + E I +LPDVP KLPPH+E QRTRV+C DAPIHT+ + YSGA+A
Sbjct: 11 MSESESEQEGVDKEGIEWIMNLPDVPMKLPPHVELQRTRVECKADAPIHTDTIQYSGAFA 70
Query: 60 SMGVDNSLQLDHFCNNFRVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKV 119
SMG DNSL+LD+F NNF++EVI L +DD+EFD+IGID A+ANAFRRILI+E+PTMAIEKV
Sbjct: 71 SMGFDNSLRLDNFRNNFKIEVIDLKEDDIEFDMIGIDPALANAFRRILISEVPTMAIEKV 130
Query: 120 LIANNTSVIQDEVLAHRLGLIPIIVDPRLFEYMSENDTSNEKNTIVFKLHVLCERGGPRL 179
L ANNTS++QDEVLAHRLGL+PI VDPRLF+Y S+ D NE NTIVF+LH CERG PRL
Sbjct: 131 LFANNTSIVQDEVLAHRLGLVPIRVDPRLFKY-SDKDAPNENNTIVFRLHACCERGKPRL 189
Query: 180 TVKTNELKWLPNGSELPLETKPDSNPSSKPRTYTSFSSSQDLLP-EFSNNPIRPM-LDIT 237
TV + L WLPNGSE PL + S +SKP+TYTSFS SQ+ L EFSNNPI P DI
Sbjct: 190 TVTSKALTWLPNGSEFPLVSD-KSVSNSKPKTYTSFSCSQNTLSKEFSNNPIGPKDSDII 248
Query: 238 IARLGPGQEIELEAHAVKGIGKTHAKWSPVATAWYRMLPEIVLLEDVEDEDAEKLVKTCP 297
+ARLGPGQEIELEAHAVKG+GKTHAKWSPVATAWYRMLPE+VL+E++EDE AE+L K CP
Sbjct: 249 LARLGPGQEIELEAHAVKGMGKTHAKWSPVATAWYRMLPEVVLMEEIEDELAEELEKKCP 308
Query: 298 VNVFDIEDIGSGKKRATVAQPRACTLCRECLRCGEEWEKRVSIRRVKDHFICK 350
VNVFDIEDI +GKKRATVA+PR CTLCREC+R G+ WEKRV++RRVKDHFI K
Sbjct: 309 VNVFDIEDI-AGKKRATVARPRDCTLCRECIR-GDAWEKRVALRRVKDHFIFK 359
>gi|297837401|ref|XP_002886582.1| ATRPAC42 [Arabidopsis lyrata subsp. lyrata]
gi|297332423|gb|EFH62841.1| ATRPAC42 [Arabidopsis lyrata subsp. lyrata]
Length = 376
Score = 471 bits (1213), Expect = e-130, Method: Compositional matrix adjust.
Identities = 234/342 (68%), Positives = 281/342 (82%), Gaps = 6/342 (1%)
Query: 9 KKKEAESFSIWDLPDVPQKLPPHIEFQRTRVQCNLDAPIHTENVMYSGAY-ASMGVDNSL 67
+K+ A++F+I DLPDVP LPPH++ Q+T V N +AP+HT + +YSG+Y +S+GVD+S+
Sbjct: 6 EKQFAKNFNIDDLPDVPTGLPPHLKAQQTGVVSNNNAPLHTASAIYSGSYVSSLGVDDSV 65
Query: 68 QLDHFCNNFRVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSV 127
+L +F NF+V+VI LTK DMEFD+IGIDAA ANAFRRILIAELP+MAIEKVLIA NTSV
Sbjct: 66 KLGNFYENFKVDVISLTKTDMEFDMIGIDAAFANAFRRILIAELPSMAIEKVLIAYNTSV 125
Query: 128 IQDEVLAHRLGLIPIIVDPRLFEYMSENDTSNEKNTIVFKLHVLCERGGPRLTVKTNELK 187
I DEVLAHR+GLIPI DPRLFEY+SEND +NEKNTIVFKLHV C + PRL V T++LK
Sbjct: 126 IIDEVLAHRMGLIPIAADPRLFEYLSENDQANEKNTIVFKLHVKCPKNRPRLKVLTSDLK 185
Query: 188 WLPNGSELPLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPM-LDITIARLGPGQE 246
WLPNGSE E+ +SKP+TYTSFS SQD LPEF+NNPI P LDI IA+L PGQE
Sbjct: 186 WLPNGSEFLRES---GGSTSKPKTYTSFSCSQDSLPEFANNPITPCDLDILIAKLAPGQE 242
Query: 247 IELEAHAVKGIGKTHAKWSPVATAWYRMLPEIVLLEDVEDEDAEKLVKTCPVNVFDIEDI 306
IELEAHAVKGIGKTHAKWSPV TAWYRM PE+VL +VEDE AE+LVK CP NVFDIED+
Sbjct: 243 IELEAHAVKGIGKTHAKWSPVGTAWYRMHPEVVLRGEVEDELAERLVKVCPQNVFDIEDM 302
Query: 307 GSGKKRATVAQPRACTLCRECLRCGEEWEKRVSIRRVKDHFI 348
G G+KRATVAQPR CTLC+EC+R ++ +RV + V++HFI
Sbjct: 303 GKGRKRATVAQPRKCTLCQECVR-DDDLVERVDLGSVRNHFI 343
>gi|357460223|ref|XP_003600393.1| DNA-directed RNA polymerase subunit D [Medicago truncatula]
gi|355489441|gb|AES70644.1| DNA-directed RNA polymerase subunit D [Medicago truncatula]
Length = 399
Score = 457 bits (1175), Expect = e-126, Method: Compositional matrix adjust.
Identities = 224/342 (65%), Positives = 273/342 (79%), Gaps = 15/342 (4%)
Query: 18 IWDLPDVPQKLPPHIEFQRTRVQCNLDAPIHTENVMYSGAYASMGVDNSLQLDHFCNNFR 77
I +L DVP LP H+E Q+TRV CNLDAP HT+ + YSGAYA++GVDNS++LD+F NF+
Sbjct: 28 IMNLEDVPSTLPTHLELQKTRVFCNLDAPQHTDTIQYSGAYAALGVDNSVRLDNFYQNFK 87
Query: 78 VEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRL 137
VEV R+T ++MEFD+IGID A+ANAFRRILIAE+PTMAIE+V IANNTS++QDEVL+HRL
Sbjct: 88 VEVKRITDEEMEFDMIGIDPAVANAFRRILIAEVPTMAIERVYIANNTSLVQDEVLSHRL 147
Query: 138 GLIPIIVDPRLFEYMSE-NDTSNEKNTIVFKLHVLCERGGPRLTVKTNELKWLPNGSELP 196
GLIPI DP+LFEY + +NEKNTIVFK HV CE+G PRLTVK++ LKWLPNGSEL
Sbjct: 148 GLIPIDADPKLFEYPDDAGGENNEKNTIVFKQHVRCEKGQPRLTVKSDTLKWLPNGSELI 207
Query: 197 LE-TKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPMLDITIARLGPGQEIELEAHAVK 255
E TK ++P+ P+T+T+F +Q LP+FS +P LD+ +A+LGPGQEIELEAHAVK
Sbjct: 208 AEGTKSAADPA--PKTFTTF--NQKSLPKFSKDPAPYNLDVIVAKLGPGQEIELEAHAVK 263
Query: 256 GIGKTHAKWSPVATAWYRMLPEIVLLEDVEDEDAEKLVKTCPVNVFDIEDIGSGKKRATV 315
GIGKTHAKWSPVATAWYRMLPE+VL +DV+DE AE+LV CP VFDIEDIG G+K+A V
Sbjct: 264 GIGKTHAKWSPVATAWYRMLPEVVLTKDVKDELAEELVSKCPAKVFDIEDIGRGRKKAVV 323
Query: 316 AQPRACTLCRECLRCGE---------EWEKRVSIRRVKDHFI 348
RACTLCREC+R + +W RVS+RRVKDHFI
Sbjct: 324 KNARACTLCRECIREADEGEEGGEGEKWTDRVSLRRVKDHFI 365
>gi|15219820|ref|NP_176282.1| DNA-directed RNA polymerase subunit [Arabidopsis thaliana]
gi|30696474|ref|NP_849833.1| DNA-directed RNA polymerase subunit [Arabidopsis thaliana]
gi|12323800|gb|AAG51868.1|AC079675_3 RNA polymerase subunit; 10595-12672 [Arabidopsis thaliana]
gi|110741863|dbj|BAE98873.1| RNA polymerase subunit [Arabidopsis thaliana]
gi|332195618|gb|AEE33739.1| DNA-directed RNA polymerase subunit [Arabidopsis thaliana]
gi|332195619|gb|AEE33740.1| DNA-directed RNA polymerase subunit [Arabidopsis thaliana]
Length = 375
Score = 456 bits (1172), Expect = e-125, Method: Compositional matrix adjust.
Identities = 230/342 (67%), Positives = 277/342 (80%), Gaps = 6/342 (1%)
Query: 9 KKKEAESFSIWDLPDVPQKLPPHIEFQRTRVQCNLDAPIHTENVMYSGAY-ASMGVDNSL 67
+K+ A++F+I DLPDVP LPPH++ Q+TRV +AP HT + +YSG Y +S D+++
Sbjct: 6 EKQFAKNFNIDDLPDVPAGLPPHLKAQQTRVVSKNNAPAHTASAIYSGTYVSSTEEDDNV 65
Query: 68 QLDHFCNNFRVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSV 127
+L +F +NF+V+V+ LTK DMEFD+IGIDAA ANAFRRILIAE+P+MAIEKVLIA NTSV
Sbjct: 66 KLGNFYDNFKVDVVSLTKTDMEFDMIGIDAAFANAFRRILIAEVPSMAIEKVLIAYNTSV 125
Query: 128 IQDEVLAHRLGLIPIIVDPRLFEYMSENDTSNEKNTIVFKLHVLCERGGPRLTVKTNELK 187
I DEVLAHR+GLIPI DPRLFEY+SE+D +NEKNTIVFKLHV C + PRL V T++LK
Sbjct: 126 IIDEVLAHRMGLIPIAADPRLFEYLSEHDQANEKNTIVFKLHVKCPKNRPRLKVLTSDLK 185
Query: 188 WLPNGSELPLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPM-LDITIARLGPGQE 246
WLPNGSEL E++ N +SKP+TYTSFS SQD LPEF+NNPI P LDI IA+L PGQE
Sbjct: 186 WLPNGSELLRESE---NKTSKPKTYTSFSCSQDSLPEFANNPITPCDLDILIAKLAPGQE 242
Query: 247 IELEAHAVKGIGKTHAKWSPVATAWYRMLPEIVLLEDVEDEDAEKLVKTCPVNVFDIEDI 306
IELEAHAVKGIGKTHAKWSPV TAWYRM PE+VL +VEDE AE+LV CP NVFDIED+
Sbjct: 243 IELEAHAVKGIGKTHAKWSPVGTAWYRMHPEVVLRGEVEDELAERLVNVCPQNVFDIEDM 302
Query: 307 GSGKKRATVAQPRACTLCRECLRCGEEWEKRVSIRRVKDHFI 348
G GKKRATVAQPR CTLC+EC+R ++ V + VK+HFI
Sbjct: 303 GKGKKRATVAQPRKCTLCKECVR-DDDLVDHVDLGSVKNHFI 343
>gi|514322|gb|AAB00528.1| RNA polymerase subunit [Arabidopsis thaliana]
gi|1586549|prf||2204246A RNA polymerase
Length = 375
Score = 453 bits (1166), Expect = e-125, Method: Compositional matrix adjust.
Identities = 229/342 (66%), Positives = 276/342 (80%), Gaps = 6/342 (1%)
Query: 9 KKKEAESFSIWDLPDVPQKLPPHIEFQRTRVQCNLDAPIHTENVMYSGAY-ASMGVDNSL 67
+K+ A++F+I DLPDVP LPPH++ Q+TRV +AP HT + +YSG Y +S D+++
Sbjct: 6 EKQFAKNFNIDDLPDVPAGLPPHLKAQQTRVVSKNNAPAHTASAIYSGTYVSSTEEDDNV 65
Query: 68 QLDHFCNNFRVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSV 127
+L +F +NF+V+V+ LTK DMEFD+IGIDAA ANAFRRILIAE+P+MAIEKVLIA NTSV
Sbjct: 66 KLGNFYDNFKVDVVSLTKTDMEFDMIGIDAAFANAFRRILIAEVPSMAIEKVLIAYNTSV 125
Query: 128 IQDEVLAHRLGLIPIIVDPRLFEYMSENDTSNEKNTIVFKLHVLCERGGPRLTVKTNELK 187
I DEVLAHR+GLIPI DPRLFEY+SE+D +NEKN IVFKLHV C + PRL V T++LK
Sbjct: 126 IIDEVLAHRMGLIPIAADPRLFEYLSEHDQANEKNNIVFKLHVKCPKNRPRLKVLTSDLK 185
Query: 188 WLPNGSELPLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPM-LDITIARLGPGQE 246
WLPNGSEL E++ N +SKP+TYTSFS SQD LPEF+NNPI P LDI IA+L PGQE
Sbjct: 186 WLPNGSELLRESE---NKTSKPKTYTSFSCSQDSLPEFANNPITPCDLDILIAKLAPGQE 242
Query: 247 IELEAHAVKGIGKTHAKWSPVATAWYRMLPEIVLLEDVEDEDAEKLVKTCPVNVFDIEDI 306
IELEAHAVKGIGKTHAKWSPV TAWYRM PE+VL +VEDE AE+LV CP NVFDIED+
Sbjct: 243 IELEAHAVKGIGKTHAKWSPVGTAWYRMHPEVVLRGEVEDELAERLVNVCPQNVFDIEDM 302
Query: 307 GSGKKRATVAQPRACTLCRECLRCGEEWEKRVSIRRVKDHFI 348
G GKKRATVAQPR CTLC+EC+R ++ V + VK+HFI
Sbjct: 303 GKGKKRATVAQPRKCTLCKECVR-DDDLVDHVDLGSVKNHFI 343
>gi|21592304|gb|AAM64255.1| RNA polymerase subunit [Arabidopsis thaliana]
Length = 375
Score = 451 bits (1159), Expect = e-124, Method: Compositional matrix adjust.
Identities = 228/342 (66%), Positives = 275/342 (80%), Gaps = 6/342 (1%)
Query: 9 KKKEAESFSIWDLPDVPQKLPPHIEFQRTRVQCNLDAPIHTENVMYSGAY-ASMGVDNSL 67
+K+ A++F+I DLPDVP LPPH++ Q+TRV +AP HT + +YSG Y +S D+++
Sbjct: 6 EKQFAKNFNIDDLPDVPAGLPPHLKAQQTRVVSKNNAPAHTASAIYSGTYVSSTEEDDNV 65
Query: 68 QLDHFCNNFRVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSV 127
+L +F +NF+V+V+ LTK DMEFD+IGIDAA ANAFRRILIAE+P+MAIEKV IA NTSV
Sbjct: 66 KLGNFYDNFKVDVVSLTKTDMEFDMIGIDAAFANAFRRILIAEVPSMAIEKVFIAYNTSV 125
Query: 128 IQDEVLAHRLGLIPIIVDPRLFEYMSENDTSNEKNTIVFKLHVLCERGGPRLTVKTNELK 187
I DEVLAHR+GLIPI DPRLFEY+SE+D +NEKNTIVFKLHV C + PRL V T++LK
Sbjct: 126 IIDEVLAHRMGLIPIAADPRLFEYLSEHDQANEKNTIVFKLHVKCPKNRPRLKVLTSDLK 185
Query: 188 WLPNGSELPLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPM-LDITIARLGPGQE 246
WLPNGSEL E++ N +SK +TYTSFS SQD LPEF+NNPI P LDI IA+L PGQE
Sbjct: 186 WLPNGSELLRESE---NKTSKLKTYTSFSCSQDSLPEFANNPITPCDLDILIAKLAPGQE 242
Query: 247 IELEAHAVKGIGKTHAKWSPVATAWYRMLPEIVLLEDVEDEDAEKLVKTCPVNVFDIEDI 306
IELEAHAVKGIGKTHAKWSPV TAWYRM PE+VL +VEDE AE+LV CP NVFDIED+
Sbjct: 243 IELEAHAVKGIGKTHAKWSPVGTAWYRMHPEVVLRGEVEDELAERLVNVCPQNVFDIEDM 302
Query: 307 GSGKKRATVAQPRACTLCRECLRCGEEWEKRVSIRRVKDHFI 348
G GKKRATVAQPR CTLC+EC+R ++ V + VK+HFI
Sbjct: 303 GKGKKRATVAQPRKCTLCKECVR-DDDLVDHVDLGSVKNHFI 343
>gi|115452445|ref|NP_001049823.1| Os03g0295400 [Oryza sativa Japonica Group]
gi|108707636|gb|ABF95431.1| RNA polymerase Rpb3/Rpb11 dimerisation domain containing protein,
expressed [Oryza sativa Japonica Group]
gi|113548294|dbj|BAF11737.1| Os03g0295400 [Oryza sativa Japonica Group]
gi|222624742|gb|EEE58874.1| hypothetical protein OsJ_10475 [Oryza sativa Japonica Group]
Length = 379
Score = 442 bits (1138), Expect = e-122, Method: Compositional matrix adjust.
Identities = 217/329 (65%), Positives = 263/329 (79%), Gaps = 13/329 (3%)
Query: 27 KLPPHIEFQRTRVQCNLDAPIHTENVMYSGAYASMGVDNSLQLDHFCNNFRVEVIRLTKD 86
KLP H+E QRTRV C DAP++TE Y+GA+A+MG+DNS+ D FC NF+V V RLT+D
Sbjct: 23 KLPEHLEVQRTRVVCKGDAPVNTEGFQYAGAFAAMGIDNSVSADKFCKNFKVVVNRLTED 82
Query: 87 DMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRLGLIPIIVDP 146
DMEFD+IGIDA++ANAFRRILIAE+PTMAIEKVL+A+NTSVI DEVL+HRLGLIP+ DP
Sbjct: 83 DMEFDMIGIDASMANAFRRILIAEVPTMAIEKVLMADNTSVIADEVLSHRLGLIPLDADP 142
Query: 147 RLFEYMSENDTSNEKNTIVFKLHVLCERGGPRLTVKTNELKWLPNGSELPLETKPDSNPS 206
RLFEY+SEND E+NTIV+KLHV C++G PRLTVK+ +L+WLP GS+LPL + S
Sbjct: 143 RLFEYISENDVPTERNTIVYKLHVSCKKGSPRLTVKSGDLEWLPEGSQLPLASPAQSG-- 200
Query: 207 SKPRTYTSFSSSQ-DLLPEFSNNPIRPMLDITIARLGPGQEIELEAHAVKGIGKTHAKWS 265
K +TYTSFS SQ D+L + + DITIARLGPGQ IELE HAVKGIGK HAKWS
Sbjct: 201 DKQKTYTSFSQSQKDILEKPLGVKFK---DITIARLGPGQAIELEVHAVKGIGKVHAKWS 257
Query: 266 PVATAWYRMLPEIVLLEDVEDEDAEKLVKTCPVNVFDIEDIGSGKKRATVAQPRACTLCR 325
PVATAWYRMLPE+VL E+++D DAE LV CPVNVFDIED+G+G+KRA VA+PRACTLCR
Sbjct: 258 PVATAWYRMLPEVVLREEIKDADAEMLVAKCPVNVFDIEDLGNGEKRAVVARPRACTLCR 317
Query: 326 ECLRCGEEWE------KRVSIRRVKDHFI 348
+C+ G E ++V +RRV+DHFI
Sbjct: 318 QCV-MGPTGEVMGPTVEQVELRRVRDHFI 345
>gi|242064360|ref|XP_002453469.1| hypothetical protein SORBIDRAFT_04g006420 [Sorghum bicolor]
gi|241933300|gb|EES06445.1| hypothetical protein SORBIDRAFT_04g006420 [Sorghum bicolor]
Length = 370
Score = 442 bits (1138), Expect = e-122, Method: Compositional matrix adjust.
Identities = 214/341 (62%), Positives = 268/341 (78%), Gaps = 9/341 (2%)
Query: 10 KKEAESFSIWDLPDVPQ-KLPPHIEFQRTRVQCNLDAPIHTENVMYSGAYASMGVDNSLQ 68
KK +S + + P+ + KLP ++E QRTRV CN DAPIHT+ YSG +A+MGVDNS+
Sbjct: 3 KKGTKSKEVDNAPNQQENKLPDYLEVQRTRVVCNADAPIHTQGYQYSGTFAAMGVDNSVS 62
Query: 69 LDHFCNNFRVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVI 128
++ FC NF++E+ RLT+DDMEFD+IGIDA+IANAFRRILIAE+PTMAIEK+ + +NTSVI
Sbjct: 63 VEKFCKNFKIEINRLTEDDMEFDMIGIDASIANAFRRILIAEVPTMAIEKIFMVDNTSVI 122
Query: 129 QDEVLAHRLGLIPIIVDPRLFEYMSENDTSNEKNTIVFKLHVLCERGGPRLTVKTNELKW 188
DEVL+HRLGLIP+ DPRLF+Y+SEND NE+NT+V+KLHV C +G R+TVK++EL+W
Sbjct: 123 ADEVLSHRLGLIPLRADPRLFDYISENDVPNERNTVVYKLHVSCPKGSQRITVKSSELEW 182
Query: 189 LPNGSELPLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPML-DITIARLGPGQEI 247
LP GS+L + S K +T+TSFS SQ E P+ DITIARLGPGQ I
Sbjct: 183 LPEGSQLSMAAPAQS--GDKQKTFTSFSQSQK---EILEEPLGVKFKDITIARLGPGQAI 237
Query: 248 ELEAHAVKGIGKTHAKWSPVATAWYRMLPEIVLLEDVEDEDAEKLVKTCPVNVFDIEDIG 307
ELEAHAVKG+GK HAKWSPVATAWYRMLPE+V+L+D+E +DAE+LVK CPVNVFDIED+G
Sbjct: 238 ELEAHAVKGVGKVHAKWSPVATAWYRMLPEVVILKDIEGDDAEELVKKCPVNVFDIEDLG 297
Query: 308 SGKKRATVAQPRACTLCRECLRCGEEWEKRVSIRRVKDHFI 348
+G KRA VA+PRACTLCREC+ +V +RRV+DHFI
Sbjct: 298 NGGKRAVVAKPRACTLCRECVMGPN--GNQVELRRVRDHFI 336
>gi|357121301|ref|XP_003562359.1| PREDICTED: DNA-directed RNA polymerases I and III subunit
rpac1-like [Brachypodium distachyon]
Length = 360
Score = 432 bits (1112), Expect = e-119, Method: Compositional matrix adjust.
Identities = 212/334 (63%), Positives = 264/334 (79%), Gaps = 14/334 (4%)
Query: 20 DLPDVP----QKLPPHIEFQRTRVQCNLDAPIHTENVMYSGAYASMGVDNSLQLDHFCNN 75
D+ DVP KLP H+E QRTRV C DAP HT+ YSGA+A+MGVDNS+ ++ FCN+
Sbjct: 2 DMDDVPTQQRNKLPDHLERQRTRVTCKADAPTHTQGFQYSGAFAAMGVDNSVSVEKFCNS 61
Query: 76 FRVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAH 135
F++++ RLT+DDMEFD+IG+DA+IANAFRRILIAE+PTMAIEKV + +NTSVI DEVL+H
Sbjct: 62 FKIKINRLTEDDMEFDMIGVDASIANAFRRILIAEVPTMAIEKVFMVDNTSVIADEVLSH 121
Query: 136 RLGLIPIIVDPRLFEYMSENDTSNEKNTIVFKLHVLCERGGPRLTVKTNELKWLPNGSEL 195
RLGLIP+ DPRLF+++S +D NE+NTIV+KLHV CE+G RLTVK+ +L+WLP GS+L
Sbjct: 122 RLGLIPLDADPRLFDHIS-DDVPNERNTIVYKLHVSCEKGSQRLTVKSGQLEWLPEGSQL 180
Query: 196 PLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIR-PMLDITIARLGPGQEIELEAHAV 254
+ + + K +TYTSF SQ S I DITIARLGPGQ IELEAHAV
Sbjct: 181 LMAS---AAQGEKQKTYTSFGQSQK---NISGRSIGVKYKDITIARLGPGQAIELEAHAV 234
Query: 255 KGIGKTHAKWSPVATAWYRMLPEIVLLEDVEDEDAEKLVKTCPVNVFDIEDIGSGKKRAT 314
KG+GK HAKWSPVATAWYRMLPE+VLL++++D +AE+LVK CPVNVFDIED+G+G KRA
Sbjct: 235 KGVGKVHAKWSPVATAWYRMLPEVVLLKEIKDGEAEELVKKCPVNVFDIEDLGNGAKRAV 294
Query: 315 VAQPRACTLCRECLRCGEEWEKRVSIRRVKDHFI 348
VA+PRACTLCREC+ G E+ V +RRV+DHFI
Sbjct: 295 VARPRACTLCRECV-MGPTGEQ-VELRRVRDHFI 326
>gi|108707637|gb|ABF95432.1| RNA polymerase Rpb3/Rpb11 dimerisation domain containing protein,
expressed [Oryza sativa Japonica Group]
Length = 352
Score = 432 bits (1111), Expect = e-118, Method: Compositional matrix adjust.
Identities = 207/303 (68%), Positives = 249/303 (82%), Gaps = 6/303 (1%)
Query: 27 KLPPHIEFQRTRVQCNLDAPIHTENVMYSGAYASMGVDNSLQLDHFCNNFRVEVIRLTKD 86
KLP H+E QRTRV C DAP++TE Y+GA+A+MG+DNS+ D FC NF+V V RLT+D
Sbjct: 23 KLPEHLEVQRTRVVCKGDAPVNTEGFQYAGAFAAMGIDNSVSADKFCKNFKVVVNRLTED 82
Query: 87 DMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRLGLIPIIVDP 146
DMEFD+IGIDA++ANAFRRILIAE+PTMAIEKVL+A+NTSVI DEVL+HRLGLIP+ DP
Sbjct: 83 DMEFDMIGIDASMANAFRRILIAEVPTMAIEKVLMADNTSVIADEVLSHRLGLIPLDADP 142
Query: 147 RLFEYMSENDTSNEKNTIVFKLHVLCERGGPRLTVKTNELKWLPNGSELPLETKPDSNPS 206
RLFEY+SEND E+NTIV+KLHV C++G PRLTVK+ +L+WLP GS+LPL + S
Sbjct: 143 RLFEYISENDVPTERNTIVYKLHVSCKKGSPRLTVKSGDLEWLPEGSQLPLASPAQSG-- 200
Query: 207 SKPRTYTSFSSSQ-DLLPEFSNNPIRPMLDITIARLGPGQEIELEAHAVKGIGKTHAKWS 265
K +TYTSFS SQ D+L + + DITIARLGPGQ IELE HAVKGIGK HAKWS
Sbjct: 201 DKQKTYTSFSQSQKDILEKPLGVKFK---DITIARLGPGQAIELEVHAVKGIGKVHAKWS 257
Query: 266 PVATAWYRMLPEIVLLEDVEDEDAEKLVKTCPVNVFDIEDIGSGKKRATVAQPRACTLCR 325
PVATAWYRMLPE+VL E+++D DAE LV CPVNVFDIED+G+G+KRA VA+PRACTLCR
Sbjct: 258 PVATAWYRMLPEVVLREEIKDADAEMLVAKCPVNVFDIEDLGNGEKRAVVARPRACTLCR 317
Query: 326 ECL 328
+C+
Sbjct: 318 QCV 320
>gi|212276110|ref|NP_001130839.1| uncharacterized protein LOC100191943 [Zea mays]
gi|194690246|gb|ACF79207.1| unknown [Zea mays]
gi|413926820|gb|AFW66752.1| hypothetical protein ZEAMMB73_992882 [Zea mays]
Length = 372
Score = 429 bits (1102), Expect = e-117, Method: Compositional matrix adjust.
Identities = 211/331 (63%), Positives = 256/331 (77%), Gaps = 12/331 (3%)
Query: 23 DVPQ----KLPPHIEFQRTRVQCNLDAPIHTENVMYSGAYASMGVDNSLQLDHFCNNFRV 78
DVP KLP ++E QRTRV CN DAPIHT+ YSGA+A+MG+DNS+ +D FC NF++
Sbjct: 15 DVPNEQENKLPDYLELQRTRVVCNADAPIHTQGFQYSGAFAAMGIDNSVSVDKFCKNFKI 74
Query: 79 EVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRLG 138
E+ RLT+D MEFD+IGIDA+IANAFRRILI+E+PTMAIEKV +A+N SVI DEVL+HRLG
Sbjct: 75 EINRLTEDYMEFDMIGIDASIANAFRRILISEVPTMAIEKVFMADNNSVIADEVLSHRLG 134
Query: 139 LIPIIVDPRLFEYMSENDTSNEKNTIVFKLHVLCERGGPRLTVKTNELKWLPNGSELPLE 198
LIP+ DPRLFEY+SEND NE+NTIV+KLHV C + R+TVK++EL+WLP GS+L +
Sbjct: 135 LIPLDADPRLFEYISENDVPNERNTIVYKLHVSCPKNSQRITVKSSELEWLPEGSQLSMS 194
Query: 199 TKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIR-PMLDITIARLGPGQEIELEAHAVKGI 257
S K +T+TSFS SQ E P+ DITIARLGPGQ IELEAHAVKG
Sbjct: 195 APAQS--GDKQKTFTSFSQSQK---EILEKPLGVKYKDITIARLGPGQAIELEAHAVKGT 249
Query: 258 GKTHAKWSPVATAWYRMLPEIVLLEDVEDEDAEKLVKTCPVNVFDIEDIGSGKKRATVAQ 317
G HAKWSPVATAWYRMLPE+V+L++VE AE+LV C VNVFDIED+ +G KRA VA+
Sbjct: 250 GNVHAKWSPVATAWYRMLPEVVILKEVEGPQAEELVNKCRVNVFDIEDLANGGKRAVVAR 309
Query: 318 PRACTLCRECLRCGEEWEKRVSIRRVKDHFI 348
PRACTLCREC+ EK+V +RRV+DHFI
Sbjct: 310 PRACTLCRECVMGPN--EKQVELRRVRDHFI 338
>gi|168042851|ref|XP_001773900.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162674744|gb|EDQ61248.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 360
Score = 406 bits (1043), Expect = e-110, Method: Compositional matrix adjust.
Identities = 201/326 (61%), Positives = 248/326 (76%), Gaps = 15/326 (4%)
Query: 27 KLPPHIEFQRTRVQCNLDAPIHTENVMYSGAYASMGVDNSLQLDHFCNNFRVEVIRLTKD 86
+LPPH+E QRTRV C DAP +TE+V YSGAY + GVDNSL+++ FC N RVE+I + ++
Sbjct: 12 ELPPHLELQRTRVVCAPDAPSYTESVQYSGAYMAYGVDNSLRIEDFCKNLRVEIISMNEE 71
Query: 87 DMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRLGLIPIIVDP 146
D+EFD++GIDAAIANAFRRILIAE+PTMAIEKV IANNTSVIQDEVLAHRLGL+PI DP
Sbjct: 72 DIEFDIVGIDAAIANAFRRILIAEVPTMAIEKVYIANNTSVIQDEVLAHRLGLLPIKADP 131
Query: 147 RLFEYMSENDTSNEKNTIVFKLHVLCERGGPRL---TVKTNELKWLPNGSELPLETKPDS 203
RLF+Y SE + +NEKNTIVFK+ V+C R G R+ +V ++++KWLP GSE+P T
Sbjct: 132 RLFDYKSEEENANEKNTIVFKIDVVCTRKGERVLNSSVTSDQMKWLPEGSEMPFNTMTK- 190
Query: 204 NPSSKPRTYTSFSSSQDLLPEFSNNPIRPML-DITIARLGPGQEIELEAHAVKGIGKTHA 262
+TSF SSQ LP I DI +A+L PGQ IELE HA+KG G HA
Sbjct: 191 --------FTSFGSSQKNLPGLPAEGISCQYPDIIVAKLRPGQAIELEGHAIKGSGNIHA 242
Query: 263 KWSPVATAWYRMLPEIVLLEDVEDEDAEKLVKTCPVNVFDIEDIGSGKKRATVAQPRACT 322
KWSPVATA YRMLPE+ L+ED++ + AE+LV+ CP VFDIED+G+ KK A VA+PR CT
Sbjct: 243 KWSPVATARYRMLPEVNLMEDIQGKLAEELVQKCPTGVFDIEDVGTVKK-AIVARPRNCT 301
Query: 323 LCRECLRCGEEWEKRVSIRRVKDHFI 348
LCREC+R G +W+KRV + RVKDHFI
Sbjct: 302 LCRECVR-GTDWDKRVQLTRVKDHFI 326
>gi|218191485|gb|EEC73912.1| hypothetical protein OsI_08749 [Oryza sativa Indica Group]
Length = 332
Score = 394 bits (1012), Expect = e-107, Method: Compositional matrix adjust.
Identities = 197/315 (62%), Positives = 240/315 (76%), Gaps = 9/315 (2%)
Query: 26 QKLPPHIEFQRTRVQCNLDAPIHTENVMYSGAYASMGVDNSLQLDHFCNNFRVEVIRLTK 85
+KLP H+E QRTRV C DAP++TE Y+GAY++MG+DNS+ + FC NF+VE+ RLT+
Sbjct: 20 KKLPEHLEVQRTRVVCKADAPVNTEGFQYAGAYSAMGIDNSVSAEKFCKNFKVEISRLTE 79
Query: 86 DDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRLGLIPIIVD 145
DDMEFD+IGIDA+IANAFRRILIAELPTMAIEKVL+ +NTSVI DEVL+HRLGLIP+ D
Sbjct: 80 DDMEFDMIGIDASIANAFRRILIAELPTMAIEKVLMVDNTSVIADEVLSHRLGLIPLDAD 139
Query: 146 PRLFEYMSENDTSNEKNTIVFKLHVLCERGGPRLTVKTNELKWLPNGSELPLETKPDSNP 205
PR FEYMSEND NE+NTIV+KLHV C++G PRLTVK+ +L+WLP GS LPL + S
Sbjct: 140 PRHFEYMSENDVPNERNTIVYKLHVSCKKGSPRLTVKSGDLEWLPEGSRLPLASPAQSR- 198
Query: 206 SSKPRTYTSFSSSQ-DLLPEFSNNPIRPML-DITIARLGPGQEIELEAHAVKGIGKTHAK 263
K +TYTSFS SQ D+L P+ DITIARLGPGQ I LE H VKG+GK HAK
Sbjct: 199 -YKQKTYTSFSQSQKDIL----EKPLGVKFKDITIARLGPGQAIVLEVHGVKGMGKVHAK 253
Query: 264 WSPVATAWYRMLPEIVLLEDVEDEDAEKLVKTCPVNVFDIEDIGSGKKRATVAQPRACTL 323
WSPVATAWYRM PE+V ++++ ++AEKLVK CPVNVFDIED+G+ +T P L
Sbjct: 254 WSPVATAWYRMFPEVVFRKEIKGDNAEKLVKKCPVNVFDIEDLGNVTIESTGGLPPEA-L 312
Query: 324 CRECLRCGEEWEKRV 338
E +R EE +RV
Sbjct: 313 FTEAVRILEEKCERV 327
>gi|302774338|ref|XP_002970586.1| hypothetical protein SELMODRAFT_231624 [Selaginella moellendorffii]
gi|300162102|gb|EFJ28716.1| hypothetical protein SELMODRAFT_231624 [Selaginella moellendorffii]
Length = 353
Score = 389 bits (1000), Expect = e-106, Method: Compositional matrix adjust.
Identities = 212/325 (65%), Positives = 248/325 (76%), Gaps = 17/325 (5%)
Query: 28 LPPHIEFQRTRVQCNLDAPIHTENVMYSGAYASMGVDNSLQLDHFCNNFRVEVIRLTKDD 87
LP H+E QRTRV C DAP +TE V YSGAY+S+ DNSL+L F NF VE+ LT+DD
Sbjct: 8 LPAHLELQRTRVICASDAPSYTETVQYSGAYSSINYDNSLRLGDFRRNFHVEIKSLTEDD 67
Query: 88 MEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRLGLIPIIVDPR 147
+EFD+IGIDAA+ANAFRRILIAE+PTMAIEKVLI +NTSVIQDEV AHRLGL+PI DPR
Sbjct: 68 LEFDMIGIDAALANAFRRILIAEVPTMAIEKVLIKDNTSVIQDEVFAHRLGLVPIKADPR 127
Query: 148 LFEYMSENDTSNEKNTIVFKLHVLCERGGPRL---TVKTNELKWLPNGSELPLETKPDSN 204
LF + D + EKNTIVF L V C R G R+ +VK+++LKWLP GS + DSN
Sbjct: 128 LFNEKTNEDVATEKNTIVFSLEVKCTRQGDRMINASVKSDQLKWLPGGSLYSM--TDDSN 185
Query: 205 PSSKPRTYTSFSSSQDLLPEFSNNPIRPML-DITIARLGPGQEIELEAHAVKGIGKTHAK 263
+TYTSFS QD + N I P DI +A+L PGQ IELEAHAVKGIGKTHAK
Sbjct: 186 -----KTYTSFSCRQDTI----QNDIAPRYKDILLAKLRPGQAIELEAHAVKGIGKTHAK 236
Query: 264 WSPVATAWYRMLPEIVLLEDVEDEDAEKLVKTCPVNVFDIEDIGSGKKRATVAQPRACTL 323
WSPVATA YRMLPE+VLLE++EDE AE+LV+ CP+ VFDIEDI G KRA VA PR+CTL
Sbjct: 237 WSPVATAAYRMLPEVVLLEEIEDELAEELVQKCPMKVFDIEDIMGG-KRARVAAPRSCTL 295
Query: 324 CRECLRCGEEWEKRVSIRRVKDHFI 348
CREC+R G++WEKRV +RRVKDHFI
Sbjct: 296 CRECIR-GDDWEKRVQLRRVKDHFI 319
>gi|302770012|ref|XP_002968425.1| hypothetical protein SELMODRAFT_409226 [Selaginella moellendorffii]
gi|300164069|gb|EFJ30679.1| hypothetical protein SELMODRAFT_409226 [Selaginella moellendorffii]
Length = 352
Score = 388 bits (997), Expect = e-105, Method: Compositional matrix adjust.
Identities = 212/325 (65%), Positives = 248/325 (76%), Gaps = 17/325 (5%)
Query: 28 LPPHIEFQRTRVQCNLDAPIHTENVMYSGAYASMGVDNSLQLDHFCNNFRVEVIRLTKDD 87
LP H+E QRTRV C DAP +TE V YSGAY+S+ DNSL+L F NF VE+ LT+DD
Sbjct: 7 LPAHLELQRTRVICASDAPSYTETVQYSGAYSSINYDNSLRLGDFRRNFHVEIKSLTEDD 66
Query: 88 MEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRLGLIPIIVDPR 147
+EFD+IGIDAA+ANAFRRILIAE+PTMAIEKVLI +NTSVIQDEV AHRLGL+PI DPR
Sbjct: 67 LEFDMIGIDAALANAFRRILIAEVPTMAIEKVLIKDNTSVIQDEVFAHRLGLVPIKADPR 126
Query: 148 LFEYMSENDTSNEKNTIVFKLHVLCERGGPRL---TVKTNELKWLPNGSELPLETKPDSN 204
LF + D + EKNTIVF L V C R G R+ +VK+++LKWLP GS + DSN
Sbjct: 127 LFNEKTNEDVATEKNTIVFSLEVKCTRQGDRMINASVKSDQLKWLPGGSLYSM--TDDSN 184
Query: 205 PSSKPRTYTSFSSSQDLLPEFSNNPIRPML-DITIARLGPGQEIELEAHAVKGIGKTHAK 263
+TYTSFS QD + N I P DI +A+L PGQ IELEAHAVKGIGKTHAK
Sbjct: 185 -----KTYTSFSCRQDTI----QNDIAPRYKDILLAKLRPGQAIELEAHAVKGIGKTHAK 235
Query: 264 WSPVATAWYRMLPEIVLLEDVEDEDAEKLVKTCPVNVFDIEDIGSGKKRATVAQPRACTL 323
WSPVATA YRMLPE+VLLE++EDE AE+LV+ CP+ VFDIEDI G KRA VA PR+CTL
Sbjct: 236 WSPVATAAYRMLPEVVLLEEIEDELAEELVQKCPMKVFDIEDIMGG-KRARVAAPRSCTL 294
Query: 324 CRECLRCGEEWEKRVSIRRVKDHFI 348
CREC+R G++WEKRV +RRVKDHFI
Sbjct: 295 CRECIR-GDDWEKRVQLRRVKDHFI 318
>gi|42571933|ref|NP_974057.1| DNA-directed RNA polymerase subunit [Arabidopsis thaliana]
gi|332195617|gb|AEE33738.1| DNA-directed RNA polymerase subunit [Arabidopsis thaliana]
Length = 302
Score = 373 bits (957), Expect = e-101, Method: Compositional matrix adjust.
Identities = 186/272 (68%), Positives = 224/272 (82%), Gaps = 5/272 (1%)
Query: 9 KKKEAESFSIWDLPDVPQKLPPHIEFQRTRVQCNLDAPIHTENVMYSGAY-ASMGVDNSL 67
+K+ A++F+I DLPDVP LPPH++ Q+TRV +AP HT + +YSG Y +S D+++
Sbjct: 6 EKQFAKNFNIDDLPDVPAGLPPHLKAQQTRVVSKNNAPAHTASAIYSGTYVSSTEEDDNV 65
Query: 68 QLDHFCNNFRVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSV 127
+L +F +NF+V+V+ LTK DMEFD+IGIDAA ANAFRRILIAE+P+MAIEKVLIA NTSV
Sbjct: 66 KLGNFYDNFKVDVVSLTKTDMEFDMIGIDAAFANAFRRILIAEVPSMAIEKVLIAYNTSV 125
Query: 128 IQDEVLAHRLGLIPIIVDPRLFEYMSENDTSNEKNTIVFKLHVLCERGGPRLTVKTNELK 187
I DEVLAHR+GLIPI DPRLFEY+SE+D +NEKNTIVFKLHV C + PRL V T++LK
Sbjct: 126 IIDEVLAHRMGLIPIAADPRLFEYLSEHDQANEKNTIVFKLHVKCPKNRPRLKVLTSDLK 185
Query: 188 WLPNGSELPLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPM-LDITIARLGPGQE 246
WLPNGSEL E++ N +SKP+TYTSFS SQD LPEF+NNPI P LDI IA+L PGQE
Sbjct: 186 WLPNGSELLRESE---NKTSKPKTYTSFSCSQDSLPEFANNPITPCDLDILIAKLAPGQE 242
Query: 247 IELEAHAVKGIGKTHAKWSPVATAWYRMLPEI 278
IELEAHAVKGIGKTHAKWSPV TAWYRM PE+
Sbjct: 243 IELEAHAVKGIGKTHAKWSPVGTAWYRMHPEV 274
>gi|297599856|ref|NP_001047973.2| Os02g0723600 [Oryza sativa Japonica Group]
gi|45736002|dbj|BAD13030.1| putative RNA polymerase subunit [Oryza sativa Japonica Group]
gi|222623582|gb|EEE57714.1| hypothetical protein OsJ_08197 [Oryza sativa Japonica Group]
gi|255671218|dbj|BAF09887.2| Os02g0723600 [Oryza sativa Japonica Group]
Length = 300
Score = 321 bits (823), Expect = 3e-85, Method: Compositional matrix adjust.
Identities = 172/315 (54%), Positives = 214/315 (67%), Gaps = 41/315 (13%)
Query: 26 QKLPPHIEFQRTRVQCNLDAPIHTENVMYSGAYASMGVDNSLQLDHFCNNFRVEVIRLTK 85
+KLP H+E QRTRV C DAP++TE Y+GAY++MG+DNS+ + FC NF+VE+ RLT+
Sbjct: 20 KKLPEHLEVQRTRVVCKADAPVNTEGFQYAGAYSAMGIDNSVSAEKFCKNFKVEISRLTE 79
Query: 86 DDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRLGLIPIIVD 145
DDMEFD+IGIDA+IANAFRRILIAELPTMAIEKVL+ +NTSVI DEVL+HRLGLIP+ D
Sbjct: 80 DDMEFDMIGIDASIANAFRRILIAELPTMAIEKVLMVDNTSVIADEVLSHRLGLIPLDAD 139
Query: 146 PRLFEYMSENDTSNEKNTIVFKLHVLCERGGPRLTVKTNELKWLPNGSELPLETKPDSNP 205
PR FEYMSEND NE+NTIV+KLHV C++G PRLTVK+ +L+WLP GS LPL + S
Sbjct: 140 PRHFEYMSENDVPNERNTIVYKLHVSCKKGSPRLTVKSGDLEWLPEGSRLPLASPAQSR- 198
Query: 206 SSKPRTYTSFSSSQ-DLLPEFSNNPIRPML-DITIARLGPGQEIELEAHAVKGIGKTHAK 263
K +TYTSFS SQ D+L P+ DITIARLGPGQ
Sbjct: 199 -YKQKTYTSFSQSQKDIL----EKPLGVKFKDITIARLGPGQ------------------ 235
Query: 264 WSPVATAWYRMLPEIVLLEDVEDEDAEKLVKTCPVNVFDIEDIGSGKKRATVAQPRACTL 323
+V ++++ ++AEKLVK CPVNVFDIED+G+ +T P L
Sbjct: 236 --------------VVFRKEIKGDNAEKLVKKCPVNVFDIEDLGNVTIESTGGLPPEA-L 280
Query: 324 CRECLRCGEEWEKRV 338
E +R EE +RV
Sbjct: 281 FTEAVRILEEKCERV 295
>gi|255071753|ref|XP_002499551.1| predicted protein [Micromonas sp. RCC299]
gi|226514813|gb|ACO60809.1| predicted protein [Micromonas sp. RCC299]
Length = 394
Score = 281 bits (720), Expect = 2e-73, Method: Compositional matrix adjust.
Identities = 166/371 (44%), Positives = 216/371 (58%), Gaps = 59/371 (15%)
Query: 26 QKLPPHIEFQRTRVQCNLDAPIHTENVMYSGAYASMGVDNSLQLDHFCNNFRVEVIRLTK 85
+++ +I+ QR V C D HT YSGAYASMG+DNS + F NF++E+ +
Sbjct: 2 EEIAANIQTQREFVTCGADENRHTAEHQYSGAYASMGIDNSFSMQSFRENFKMEITHMDA 61
Query: 86 DDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRLGLIPIIVD 145
+ + F++ GI AIANAFRRILIAE+PTMAIEKV + NNTSVIQDEV AHRLGLIPI D
Sbjct: 62 ERVVFEMQGISPAIANAFRRILIAEVPTMAIEKVYMVNNTSVIQDEVFAHRLGLIPIRAD 121
Query: 146 PRLFEYMSENDTSNEKNTIVFKLHVLCER-------GGPRLT--VKTNELKWLPNGSELP 196
PRLFEY +E +T NE+NTIVFK++V C R GP + V TNEL WLP GSELP
Sbjct: 122 PRLFEYKAEGETYNERNTIVFKMNVRCYREKTDDGSKGPLMNSFVYTNELVWLPKGSELP 181
Query: 197 LETKPDSNPSSKPRTYTSFSSSQ--------------------DLLPEFSNNPIRPML-- 234
PD +T+F+ SQ ++ P + +N +
Sbjct: 182 ----PDEESK-----FTAFTQSQAEYLKERNDEAAAAAAAAGEEVTPLYGDNDPNEIATV 232
Query: 235 --DITIARLGPGQEIELEAHAVKGIGKTHAKWSPVATAWYRMLPEIVLLED--VEDEDAE 290
DI + ++ GQEIELEAH VKG GK HAKWSPV T WYRM+P++ ++ ++ EDA+
Sbjct: 233 HDDILLCKMVAGQEIELEAHCVKGQGKEHAKWSPVGTTWYRMVPKVEFIDKDYLDGEDAD 292
Query: 291 KLVKTCPVNVFD--------IEDIGS--GKKRATVAQPRACTLCRECLR--CGE-EWEKR 337
+K C N FD E G G+K V R C C E +R CGE W+++
Sbjct: 293 VFMKEC--NDFDPSHNCYGWFEKDGGKKGEKCVKVVNERGCDYCLERVRTLCGEPGWDEK 350
Query: 338 VSIRRVKDHFI 348
V + + K HFI
Sbjct: 351 VRVLKSKSHFI 361
>gi|255636318|gb|ACU18498.1| unknown [Glycine max]
Length = 233
Score = 278 bits (710), Expect = 3e-72, Method: Compositional matrix adjust.
Identities = 142/212 (66%), Positives = 166/212 (78%), Gaps = 8/212 (3%)
Query: 18 IWDLPDVPQKLPPHIEFQRTRVQCNLDAPIHTENVMYSGAYASMGVDNSLQLDHFCNNFR 77
I L +VP KLPPH+E +TRV CN DAP+HT+ V YSGAYA MGVDNS++LD FC NF+
Sbjct: 28 ILSLDNVPSKLPPHLELFKTRVLCNNDAPVHTDTVQYSGAYAIMGVDNSVRLDSFCENFK 87
Query: 78 VEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRL 137
VEV RLT D+EFD+IGID AIANAFRRIL+AE+PTMAIE+V IANNTSV+QDEVL+HRL
Sbjct: 88 VEVKRLTDSDIEFDMIGIDPAIANAFRRILVAEVPTMAIERVYIANNTSVVQDEVLSHRL 147
Query: 138 GLIPIIVDPRLFEY-MSENDTSNEKNTIVFKLHVLCERGGPRLTVKTNELKWLPNGSELP 196
GLIPI DPRLFEY + D NEKNTIVFKLHV C+ G PR+TVK+++LKWLPNGSELP
Sbjct: 148 GLIPIRADPRLFEYPENAGDDKNEKNTIVFKLHVRCQVGQPRITVKSDKLKWLPNGSELP 207
Query: 197 LE-TKPDSNPSSKPRTYTSFSSSQDLLPEFSN 227
E KP N SKP+T F L P F++
Sbjct: 208 CEDVKP--NAGSKPKTIYIFY----LQPRFTS 233
>gi|307103493|gb|EFN51752.1| hypothetical protein CHLNCDRAFT_27642 [Chlorella variabilis]
Length = 381
Score = 273 bits (699), Expect = 7e-71, Method: Compositional matrix adjust.
Identities = 152/329 (46%), Positives = 205/329 (62%), Gaps = 25/329 (7%)
Query: 26 QKLPPHIEFQRTRVQCNLDAPIHTENVMYSGAYASMGVDNSLQLDHFCNNFRVEVIRLTK 85
Q+LP +E RTRV C D IHT + + + +AS+GVD + L+ F F+V++ R
Sbjct: 29 QQLPDALELARTRVLCGPDVNIHTTSTIAASQWASLGVDAAFDLEKFKKGFQVDITRYEG 88
Query: 86 DDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRLGLIPIIVD 145
DMEF++ G+ A+AN+ RRI+I+E PTMAIE V I NNTSVIQDEVL+HRLGLIP+ VD
Sbjct: 89 YDMEFEMKGVSCALANSLRRIMISEAPTMAIEHVYIVNNTSVIQDEVLSHRLGLIPLKVD 148
Query: 146 PRLFEYMSENDTSNEKNTIVFKLHVLCER----GGPRLTVKTNELKWLPNGSELPLETKP 201
PRLF+Y ++ D +E+NTIV KL V C R G V + +L+WLP GSE+P ET
Sbjct: 149 PRLFQYKAKEDAPSEQNTIVLKLKVECRRLPNSGMENDKVYSRDLQWLPEGSEMPDETS- 207
Query: 202 DSNPSSKPRTYTSFSSSQ-DLLPEFSNNPIRPML-DITIARLGPGQEIELEAHAVKGIGK 259
F+SSQ L+PE +RP+ DI IA+L PGQ IELE H +KG+G
Sbjct: 208 -----------CRFASSQAALVPE----DVRPVHDDILIAKLRPGQAIELECHCIKGVGD 252
Query: 260 THAKWSPVATAWYRMLPEIVLLEDVEDEDAEKLVKTCPVNVFDIEDIGSGKKRATVAQPR 319
HAKWSPVAT WYR++PE+VLL+ + AE+LV+ ++ +GSG V
Sbjct: 253 DHAKWSPVATTWYRLMPEVVLLQQPRGKIAEELVEQ---LPGLLQLLGSGDHATVVVGDA 309
Query: 320 ACTLCRECLRCGEEWEKRVSIRRVKDHFI 348
C+LC E + + +R++KDHFI
Sbjct: 310 PCSLCWGACVDKERYMPYLQLRKIKDHFI 338
>gi|440800830|gb|ELR21864.1| RNA polymerase Rpb3/Rpb11 dimerization domain containing protein
[Acanthamoeba castellanii str. Neff]
Length = 350
Score = 270 bits (689), Expect = 9e-70, Method: Compositional matrix adjust.
Identities = 147/317 (46%), Positives = 201/317 (63%), Gaps = 24/317 (7%)
Query: 35 QRTRVQCNLDAPIHTENVMYSGAYASMGVDNSLQLDHFCNNFRVEVIRLTKDD--MEFDL 92
++TRV AP++ S Y S+GVDN ++ +N ++++I + + FDL
Sbjct: 16 KKTRVGFTNPAPVYPGTSFASDTYQSLGVDNKFDINDLMSNLKIKIIDYKPKEGLLVFDL 75
Query: 93 IGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRLGLIPIIVDPRLFEYM 152
IG+DA +ANAFRRIL++E+PTMAIE V I NNTS+IQDEVLAHRLGLIPI VDPR FE+
Sbjct: 76 IGVDAPVANAFRRILLSEIPTMAIEHVWIHNNTSIIQDEVLAHRLGLIPIKVDPRKFEFK 135
Query: 153 SENDTSNEKNTIVFKLHVLCERGGPRLTVKTNELKWLPNGSELPLETKPDSNPSSKPRTY 212
+ ++ T+VFKL V C R TN + P E +S S+ +
Sbjct: 136 KPGEEETDETTLVFKLKVRCTRSN-----NTN--------PQNPEEAYVNSKVYSRDLIW 182
Query: 213 TSFSSSQDLLPEFSNNPIRPML-DITIARLGPGQEIELEAHAVKGIGKTHAKWSPVATAW 271
+L F+++P RP+ DI IA+L PGQEIE+E KG GK HAKWSPV+TA+
Sbjct: 183 EPVGGQAEL---FADDPPRPVHDDILIAKLRPGQEIEVECRCAKGEGKEHAKWSPVSTAY 239
Query: 272 YRMLPEIVLLEDVEDEDAEKLVKTCPVNVFDIEDIGSGKKRATVAQPRACTLCRECLRCG 331
YR+LP+I ++D + ++A+KLV CP+NVFDIED G +A V R CT+CREC+R
Sbjct: 240 YRLLPDIKFVKDFKGQEAKKLVAKCPMNVFDIEDSG----KAYVKNQRNCTMCRECIR-E 294
Query: 332 EEWEKRVSIRRVKDHFI 348
+ W+KR+ + RVKDHFI
Sbjct: 295 DGWDKRIKLLRVKDHFI 311
>gi|281209634|gb|EFA83802.1| RNA polymerase III subunit [Polysphondylium pallidum PN500]
Length = 358
Score = 265 bits (677), Expect = 3e-68, Method: Compositional matrix adjust.
Identities = 140/317 (44%), Positives = 195/317 (61%), Gaps = 25/317 (7%)
Query: 32 IEFQRTRVQCNLDAPIHTENVMYSGAYASMGVDNSLQLDHFCNNFRVEVIRLTKDDMEFD 91
+E QRTRV+ +T + YSGAY S+G DNS LD F NF++ V+ D + F+
Sbjct: 30 LENQRTRVRVGNAGNENTRGIYYSGAYTSLGYDNSFSLDKFKKNFKINVLSDKPDHLVFE 89
Query: 92 LIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRLGLIPIIVDPRLFEY 151
+IG+DA IANA RRILI+E+PTMAIE+V + NNTS++QDEVLAHRLGLIPI VDP++F Y
Sbjct: 90 MIGVDAPIANALRRILISEIPTMAIERVFMINNTSILQDEVLAHRLGLIPIKVDPKIFNY 149
Query: 152 MSENDTSNEKNTIVFKLHVLCERGGPRLTVKTNELKWLPNGSELPLETKPDSNPSSKPRT 211
++T++F L V C + T+ NG+ L SK T
Sbjct: 150 KEPGKEYTAEDTLIFTLKVRCYKDANGETI---------NGTVL-----------SKHLT 189
Query: 212 YTSFSSSQDLLPEFSNNPIRPMLDITIARLGPGQEIELEAHAVKGIGKTHAKWSPVATAW 271
+ ++ P +++P DI I +L PGQ +E++ + K IG+ H KWSPV TA+
Sbjct: 190 WVPTDDQNEMFPNEADHPRPAYDDIPIVKLRPGQALEVQCYCEKNIGREHIKWSPVGTAF 249
Query: 272 YRMLPEIVLLEDVEDEDAEKLVKTCPVNVFDIEDIGSGKKRATVAQPRACTLCRECLRCG 331
Y++LPEI + + V E A+KL ++CP+NV+DIED G +A A+P CT+CREC+R
Sbjct: 250 YKILPEISVSDKVTGEKAKKLKQSCPMNVYDIEDSG----KAFAARPMDCTMCRECIR-D 304
Query: 332 EEWEKRVSIRRVKDHFI 348
E E V + RV+DHFI
Sbjct: 305 PEMEPFVKLERVRDHFI 321
>gi|384248203|gb|EIE21688.1| insert subdomain of RNA polymerase alpha subunit [Coccomyxa
subellipsoidea C-169]
Length = 372
Score = 261 bits (668), Expect = 3e-67, Method: Compositional matrix adjust.
Identities = 157/352 (44%), Positives = 208/352 (59%), Gaps = 37/352 (10%)
Query: 10 KKEAESFSIWDLPDVPQKLPPHIEFQRTRVQC----NLDAPIHTENVMYSGAYASMGVDN 65
KK+ ++ D D P KLP H+E Q+ V C N + I + M+S ++GVDN
Sbjct: 12 KKQRADAAVSD--DEPGKLPEHLEKQQQYVTCGNNLNYNVSIGSSAHMFS----ALGVDN 65
Query: 66 SLQLDHFCNNFRVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNT 125
S F +F+V + + +DMEFD+IGID AIANA RRILI+E+PT+AIE V I NNT
Sbjct: 66 SWSHKKFQRDFKVAMKWVRGNDMEFDVIGIDPAIANALRRILISEIPTVAIEHVYIINNT 125
Query: 126 SVIQDEVLAHRLGLIPIIVDPRLFEYMSENDTSNEKNTIVFKLHVLCERGGPRLT---VK 182
S+I EVL+HRLGL+PI VDP L + S +T+ E N+IVFKL V C R G + VK
Sbjct: 126 SIIACEVLSHRLGLVPIQVDPNLLQDKSGEETATETNSIVFKLDVRCRREGDMMVNEKVK 185
Query: 183 TNELKWLPNGSELPLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPML---DITIA 239
+ +L+WLPNGSE+P ET ++SSQ+ L P L DI +A
Sbjct: 186 SGQLRWLPNGSEMPEETN------------CRYASSQEALL----GPAGARLVHDDILLA 229
Query: 240 RLGPGQEIELEAHAVKGIGKTHAKWSPVATAWYRMLPEIVLLEDVEDEDAEKLVKTCPVN 299
++ PGQEI LEAH V+G G HAKWSPVATAWYR+ PE+ +L+ V A+ L CP
Sbjct: 230 KMRPGQEIVLEAHCVRGTGAEHAKWSPVATAWYRLQPEVAILQPVVGPKADALAAACP-G 288
Query: 300 VFDIEDIGSGKKRATVAQPRACTLCRECLR---CGEEWEKRVSIRRVKDHFI 348
+F +E G+ +RA R E +R EEW + V +R+ KDHFI
Sbjct: 289 LFTVEGSGA-SRRAVAGDARQHEKQLEKVRRMSGEEEWSEHVELRKRKDHFI 339
>gi|328866801|gb|EGG15184.1| RNA polymerase III subunit [Dictyostelium fasciculatum]
Length = 355
Score = 259 bits (661), Expect = 2e-66, Method: Compositional matrix adjust.
Identities = 147/329 (44%), Positives = 199/329 (60%), Gaps = 34/329 (10%)
Query: 26 QKLPPHI-EFQRTRVQCNLDAPIHTENVMYSGAYASMGVDNSLQLDHFCNNFRVEVIRLT 84
+K+P I E QRTRV +T V YSGAY S+G DNS L+ F NF+++V++
Sbjct: 18 EKVPNEILENQRTRVSVGNAGVENTRGVYYSGAYTSLGYDNSFSLERFKKNFQIKVLQDK 77
Query: 85 KDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRLGLIPIIV 144
D + F++IG+DA IANA RRILIAE+PTMAIEKV I NNTS++QDEVLAHRLGLIPI V
Sbjct: 78 PDHLVFEMIGVDAPIANALRRILIAEIPTMAIEKVFIINNTSILQDEVLAHRLGLIPIKV 137
Query: 145 DPRLFEYMSENDTSNEKNTIVFKLHVLC--ERGGPRL--TVKTNELKWLPNGSELPLETK 200
DPR F + + ++T++FKL+V C + G + TV + +LKW P + E+
Sbjct: 138 DPRKFNFKQASKEYTAEDTLIFKLNVRCYKDENGETVNGTVTSGQLKWEPTEDQ---ESM 194
Query: 201 PDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPMLDITIARLGPGQEIELEAHAVKGIGKT 260
NP PR P+ DI I +L PGQ ++++ + K IG+
Sbjct: 195 FGENPEDFPR------------------PVHD--DIPIVKLRPGQTVDIQLYCEKNIGRE 234
Query: 261 HAKWSPVATAWYRMLPEIVL-LEDVEDEDAEKLVKTCPVNVFDIEDIGSGKKRATVAQPR 319
H KWSPV TA YR++P+I + + + AEKL TCP NVFDIED + A+P
Sbjct: 235 HIKWSPVGTASYRLMPDITVDSSKFDKKQAEKLKATCPKNVFDIED----SYQVIAARPL 290
Query: 320 ACTLCRECLRCGEEWEKRVSIRRVKDHFI 348
CT+CREC+R E+E V + R++DHFI
Sbjct: 291 DCTMCRECIR-DPEFENVVKLERIRDHFI 318
>gi|3335138|gb|AAC39892.1| RNA polymerase I 40kD subunit [Homo sapiens]
gi|119624609|gb|EAX04204.1| polymerase (RNA) I polypeptide C, 30kDa, isoform CRA_a [Homo
sapiens]
Length = 342
Score = 258 bits (660), Expect = 2e-66, Method: Compositional matrix adjust.
Identities = 146/309 (47%), Positives = 200/309 (64%), Gaps = 20/309 (6%)
Query: 47 IHTENVMYSGAYASMGVDNSLQLDHFCNNFRVEVIRLTKDDMEFDLIGIDAAIANAFRRI 106
+HT + + G Y+ G D++ D F NFRV+V+ + ++ +EFD++GIDAAIANAFRRI
Sbjct: 24 VHTTD--FPGNYS--GYDDAWDQDRFEKNFRVDVVHMDENSLEFDMVGIDAAIANAFRRI 79
Query: 107 LIAELPTMAIEKVLIANNTSVIQDEVLAHRLGLIPIIVDPRLFEYMSEND-TSNEKNTIV 165
L+AE+PTMA+EKVL+ NNTS++QDE+LAHRLGLIPI DPRLFEY ++ D E +T+
Sbjct: 80 LLAEVPTMAVEKVLVYNNTSIVQDEILAHRLGLIPIHADPRLFEYRNQGDEEGTEIDTLQ 139
Query: 166 FKLHVLCERGGPRLTVKTNELKWLPNGSELPLETKPDSNPSSKPRTYTSFSSSQDLLPEF 225
F+L V C R P +++ P E + ++ T+ + DL PE
Sbjct: 140 FRLQVRCTR-NPHAAKDSSD----------PNELYVNHKVYTRHMTWIPLGNQADLFPEG 188
Query: 226 SNNPIRPMLDITIARLGPGQEIELEAHAVKGIGKTHAKWSPVATAWYRMLPEIVLLEDVE 285
+ P+ DI IA+L PGQEI+L H VKGIGK HAK+SPVATA YR+LP+I LLE VE
Sbjct: 189 TIRPVHD--DILIAQLRPGQEIDLLMHCVKGIGKDHAKFSPVATASYRLLPDITLLEPVE 246
Query: 286 DEDAEKLVKTCPVNVFDIEDIGSGKKRATVAQPRACTLCRECLRCGEEWEKRVSIRRVKD 345
E AE+L + V +++++ GKK A VA PR T RE R E+ +K V + RV+D
Sbjct: 247 GEAAEELSRCFSPGVIEVQEV-QGKKVARVANPRLDTFSREIFR-NEKLKKVVRLARVRD 304
Query: 346 HFICKYVML 354
H+ICK +L
Sbjct: 305 HYICKKDLL 313
>gi|291000877|ref|XP_002683005.1| predicted protein [Naegleria gruberi]
gi|284096634|gb|EFC50261.1| predicted protein [Naegleria gruberi]
Length = 398
Score = 258 bits (659), Expect = 3e-66, Method: Compositional matrix adjust.
Identities = 141/344 (40%), Positives = 206/344 (59%), Gaps = 51/344 (14%)
Query: 28 LPPHIEFQRTRVQCNLDAPIHTENVMYSGAYASMGVDNSLQLDHFCNNFRVEVIRLTKDD 87
LPP +E RTRV+ AP T + Y ++ ++ DNS L+ F N R+ +++ ++D
Sbjct: 9 LPPQVEDLRTRVRVGRHAPTQTSTISYHSSFQNLNYDNSFSLEDFQENLRINILKRDEND 68
Query: 88 MEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRLGLIPIIVDPR 147
+ F++IGIDA IANAFRRI+++E+P+MAIEKV+ NTS+IQDEVLAHR+GL+PI DP
Sbjct: 69 LVFEMIGIDAPIANAFRRIMLSEVPSMAIEKVVYLTNTSIIQDEVLAHRIGLVPIRCDPD 128
Query: 148 LFEYMSENDTSNE------KNTIVFKLHVLCERG------------GPRLTVKTNELKWL 189
F + + + NE I+F+L+V CE+ V + +LKW+
Sbjct: 129 FF-FFARDINQNEDIILLDNEYILFELNVTCEKTLVPNPHNQNKLEYKHSKVYSGDLKWV 187
Query: 190 PNGSELPLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPML-DITIARLGPGQEIE 248
P G++ T F+ N IRP+ DI +A+L PGQ I
Sbjct: 188 PIGNQ-----------------STHFNGE---------NAIRPVYDDILLAKLNPGQSIH 221
Query: 249 LEAHAVKGIGKTHAKWSPVATAWYRMLPEIVLLED--VEDEDAEKLVKTCPVNVFDIEDI 306
++ + VKGIG++HAKW PVATA YR++PE+V + E + A++LV+ CP+NVFDIED
Sbjct: 222 VQCYCVKGIGRSHAKWQPVATATYRLMPEVVFKGEPVTELKQAKELVEKCPMNVFDIEDS 281
Query: 307 GSGK--KRATVAQPRACTLCRECLRCGEEWEKRVSIRRVKDHFI 348
+ + VA+P CT+CREC+R + W+KR+ + RVKDHFI
Sbjct: 282 PQTEFDSKVRVARPMNCTMCRECIR-EDNWDKRIQLSRVKDHFI 324
>gi|302845439|ref|XP_002954258.1| hypothetical protein VOLCADRAFT_64591 [Volvox carteri f.
nagariensis]
gi|300260463|gb|EFJ44682.1| hypothetical protein VOLCADRAFT_64591 [Volvox carteri f.
nagariensis]
Length = 354
Score = 258 bits (659), Expect = 3e-66, Method: Compositional matrix adjust.
Identities = 153/329 (46%), Positives = 205/329 (62%), Gaps = 29/329 (8%)
Query: 27 KLPPHIEFQRTRVQCN--LDAPIHTENVMYSGAYASMGVDNSLQLDHFCNNFRVEVIRLT 84
KLP H+E +R V C L+ +HT + +++MGVDNS L F +F++ + +L
Sbjct: 15 KLPEHLELRRDYVTCGDKLNYNVHT--FTSANVFSAMGVDNSWDLAQFKKDFKIIINKLD 72
Query: 85 KDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRLGLIPIIV 144
K+ +EFD+IG+D AIANA RRILIAE+PTMAIE V + NNTS+IQDEVLAHRLG++P++
Sbjct: 73 KEVLEFDMIGVDPAIANALRRILIAEVPTMAIEHVFMINNTSIIQDEVLAHRLGMVPLLA 132
Query: 145 DPRLFEYMSENDTSNEKNTIVFKLHVLCERGGPRLTVKTNELKWLPNGSELPLETKPDSN 204
DP+LFE + +EKNT+VFKL V C+RG R+ + +L+WLP GSELP ET
Sbjct: 133 DPQLFEAKVAEEAPSEKNTLVFKLDVTCKRGENRMF--SGQLEWLPGGSELPEETT---- 186
Query: 205 PSSKPRTYTSFSSSQDLLPEFSNNPIRPML---DITIARLGPGQEIELEAHAVKGIGKTH 261
F++ Q L P +P DI +A+L PGQ I+LEAHA KG GK H
Sbjct: 187 --------CRFAAGQAHLFADPATP-KPRAVHDDILLAKLRPGQTIQLEAHATKGRGKEH 237
Query: 262 AKWSPVATAWYRMLPEIVLLEDVE-DED-AEKLVKTCPVNVFDIEDIGSGKKRATVAQPR 319
AKWSPVATAWYR+ P + +++DV D D ++L+ CP +F + D G RA A R
Sbjct: 238 AKWSPVATAWYRLQPVVHVIQDVAVDSDVGQELMSACP-GLF-VADEGGRVLRANDA--R 293
Query: 320 ACTLCRECLRCGEEWEKRVSIRRVKDHFI 348
+ R L E + VS R+ KDHFI
Sbjct: 294 GHEMLRRLLE-QERFSSCVSYRKKKDHFI 321
>gi|417409648|gb|JAA51322.1| Putative rna polymerase i and iii subunit, partial [Desmodus
rotundus]
Length = 316
Score = 258 bits (658), Expect = 4e-66, Method: Compositional matrix adjust.
Identities = 144/308 (46%), Positives = 196/308 (63%), Gaps = 20/308 (6%)
Query: 47 IHTENVMYSGAYASMGVDNSLQLDHFCNNFRVEVIRLTKDDMEFDLIGIDAAIANAFRRI 106
+HT + + G Y+ G D++ D F NFRV+VI + ++ +EFD++GIDAAIANAFRR+
Sbjct: 25 VHTTD--FPGNYS--GYDDAWDQDRFEKNFRVDVIHMDENTLEFDMVGIDAAIANAFRRV 80
Query: 107 LIAELPTMAIEKVLIANNTSVIQDEVLAHRLGLIPIIVDPRLFEYMSEND-TSNEKNTIV 165
L+AE+PTMA+EKVL+ NNTS++QDE+LAHRLGLIPI DPRLFEY ++ D E +T+
Sbjct: 81 LLAEVPTMAVEKVLVYNNTSIVQDEILAHRLGLIPIHADPRLFEYRNQGDEEGTEIDTLQ 140
Query: 166 FKLHVLCERGGPRLTVKTNELKWLPNGSELPLETKPDSNPSSKPRTYTSFSSSQDLLPEF 225
F+L V C R S P E + ++ T+ + DL P+
Sbjct: 141 FRLQVRCTRN-----------SHAAKDSSDPNELYVNHKVYTRHMTWVPLGNQADLFPDG 189
Query: 226 SNNPIRPMLDITIARLGPGQEIELEAHAVKGIGKTHAKWSPVATAWYRMLPEIVLLEDVE 285
+ P+ DI IA+L PGQEI+L H VKGIGK HAK+SPVATA YR+LP+I LLE VE
Sbjct: 190 TIRPVHD--DILIAQLRPGQEIDLLMHCVKGIGKDHAKFSPVATASYRLLPDITLLEPVE 247
Query: 286 DEDAEKLVKTCPVNVFDIEDIGSGKKRATVAQPRACTLCRECLRCGEEWEKRVSIRRVKD 345
E AE+L + V ++ ++ GKK A VA PR T RE R E+ +K V + RV+D
Sbjct: 248 GEAAEELRRCFSPGVIEVHEV-QGKKVARVANPRLDTFSREVFR-NEKLKKVVRLARVRD 305
Query: 346 HFICKYVM 353
H+IC+Y +
Sbjct: 306 HYICEYAV 313
>gi|332824146|ref|XP_003311364.1| PREDICTED: DNA-directed RNA polymerases I and III subunit RPAC1
isoform 2 [Pan troglodytes]
Length = 342
Score = 258 bits (658), Expect = 4e-66, Method: Compositional matrix adjust.
Identities = 145/305 (47%), Positives = 198/305 (64%), Gaps = 20/305 (6%)
Query: 47 IHTENVMYSGAYASMGVDNSLQLDHFCNNFRVEVIRLTKDDMEFDLIGIDAAIANAFRRI 106
+HT + + G Y+ G D++ D F NFRV+V+ + ++ +EFD++GIDAAIANAFRRI
Sbjct: 24 VHTTD--FPGNYS--GYDDAWDQDRFEKNFRVDVVHMDENSLEFDMVGIDAAIANAFRRI 79
Query: 107 LIAELPTMAIEKVLIANNTSVIQDEVLAHRLGLIPIIVDPRLFEYMSEND-TSNEKNTIV 165
L+AE+PTMA+EKVL+ NNTS++QDE+LAHRLGLIPI DPRLFEY ++ D E +T+
Sbjct: 80 LLAEVPTMAVEKVLVYNNTSIVQDEILAHRLGLIPIHADPRLFEYRNQGDEEGTEIDTLQ 139
Query: 166 FKLHVLCERGGPRLTVKTNELKWLPNGSELPLETKPDSNPSSKPRTYTSFSSSQDLLPEF 225
F+L V C R P +++ P E + ++ T+ + DL PE
Sbjct: 140 FRLQVRCTR-NPHAAKDSSD----------PNELYVNHKVYTRHMTWIPLGNQADLFPEG 188
Query: 226 SNNPIRPMLDITIARLGPGQEIELEAHAVKGIGKTHAKWSPVATAWYRMLPEIVLLEDVE 285
+ P+ DI IA+L PGQEI+L H VKGIGK HAK+SPVATA YR+LP+I LLE VE
Sbjct: 189 TIRPVHD--DILIAQLRPGQEIDLLMHCVKGIGKDHAKFSPVATASYRLLPDITLLEPVE 246
Query: 286 DEDAEKLVKTCPVNVFDIEDIGSGKKRATVAQPRACTLCRECLRCGEEWEKRVSIRRVKD 345
E AE+L + V +++++ GKK A VA PR T RE R E+ +K V + RV+D
Sbjct: 247 GEAAEELSRCFSPGVIEVQEV-QGKKVARVANPRLDTFSREIFR-NEKLKKVVRLARVRD 304
Query: 346 HFICK 350
H+ICK
Sbjct: 305 HYICK 309
>gi|84000223|ref|NP_001033213.1| DNA-directed RNA polymerases I and III subunit RPAC1 [Bos taurus]
gi|122143987|sp|Q32L22.1|RPAC1_BOVIN RecName: Full=DNA-directed RNA polymerases I and III subunit RPAC1;
Short=DNA-directed RNA polymerase I subunit C; Short=RNA
polymerases I and III subunit AC1
gi|81673907|gb|AAI09804.1| Polymerase (RNA) I polypeptide C, 30kDa [Bos taurus]
gi|296474425|tpg|DAA16540.1| TPA: DNA-directed RNA polymerases I and III subunit RPAC1 [Bos
taurus]
Length = 346
Score = 257 bits (656), Expect = 7e-66, Method: Compositional matrix adjust.
Identities = 148/318 (46%), Positives = 199/318 (62%), Gaps = 18/318 (5%)
Query: 32 IEFQRTRVQCNLDAPIHTENVMYSGAYASMGVDNSLQLDHFCNNFRVEVIRLTKDDMEFD 91
+E RTRV + + G Y+ G D++ D F NFRV+V+ + ++ +EFD
Sbjct: 7 VEEMRTRVVLGEFGVRNVHTTDFPGNYS--GYDDAWDQDRFEKNFRVDVVHMDENSLEFD 64
Query: 92 LIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRLGLIPIIVDPRLFEY 151
++GIDAAIANAFRRIL+AE+PTMA+EKVL+ NNTS++QDE+LAHRLGLIPI DPRLFEY
Sbjct: 65 MVGIDAAIANAFRRILLAEVPTMAVEKVLVYNNTSIVQDEILAHRLGLIPIHADPRLFEY 124
Query: 152 MSENDTSN-EKNTIVFKLHVLCERGGPRLTVKTNELKWLPNGSELPLETKPDSNPSSKPR 210
++ D E +T+ F+L V C R P +++ P E + ++
Sbjct: 125 RNQGDEGGTEIDTLQFRLQVRCTR-NPHAAKDSSD----------PNELYVNHRVYTRHM 173
Query: 211 TYTSFSSSQDLLPEFSNNPIRPMLDITIARLGPGQEIELEAHAVKGIGKTHAKWSPVATA 270
T+ + DL PE + P+ DI IA+L PGQEI+L H VKGIGK HAK+SPVATA
Sbjct: 174 TWVPLGNQADLFPEGAIRPVHD--DILIAQLRPGQEIDLLMHCVKGIGKDHAKFSPVATA 231
Query: 271 WYRMLPEIVLLEDVEDEDAEKLVKTCPVNVFDIEDIGSGKKRATVAQPRACTLCRECLRC 330
YR+LP+I LLE VE E AE+L + V ++++I GKK A VA PR T RE R
Sbjct: 232 SYRLLPDITLLEPVEGEAAEELSRCFSPGVIEVQEI-QGKKVARVANPRLDTFSREVFR- 289
Query: 331 GEEWEKRVSIRRVKDHFI 348
E+ +K V + RV+DHFI
Sbjct: 290 NEKLKKVVRLARVRDHFI 307
>gi|440902447|gb|ELR53239.1| DNA-directed RNA polymerases I and III subunit RPAC1 [Bos grunniens
mutus]
Length = 343
Score = 256 bits (655), Expect = 9e-66, Method: Compositional matrix adjust.
Identities = 149/324 (45%), Positives = 198/324 (61%), Gaps = 33/324 (10%)
Query: 32 IEFQRTRVQCNLDAPIHTENVMYSGAYASMGVDNSLQLDHFCNNFRVEVIRLTKDDMEFD 91
+E RTRV + + G Y+ G D++ D F NFRV+V+ + ++ +EFD
Sbjct: 7 VEEMRTRVVLGEFGVRNVHTTDFPGNYS--GYDDAWDQDRFEKNFRVDVVHMDENSLEFD 64
Query: 92 LIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRLGLIPIIVDPRLFEY 151
++GIDAAIANAFRRIL+AE+PTMA+EKVL+ NNTS++QDE+LAHRLGLIPI DPRLFEY
Sbjct: 65 MVGIDAAIANAFRRILLAEVPTMAVEKVLVYNNTSIVQDEILAHRLGLIPIHADPRLFEY 124
Query: 152 MSENDTSN-EKNTIVFKLHVLCERGGPRLTVKTNELKWLPNGSELPLETKPDSNPS---- 206
++ D E +T+ F+L V C R P K S+P+
Sbjct: 125 RNQGDEGGTEIDTLQFRLQVRCTRN--------------------PHAAKDSSDPNELYV 164
Query: 207 --SKPRTYTSFSSSQDLLPEFSNNPIRPMLDITIARLGPGQEIELEAHAVKGIGKTHAKW 264
++ T+ + DL PE + P+ DI IA+L PGQEI+L H VKGIGK HAK+
Sbjct: 165 MYTRHMTWVPLGNQADLFPEGAIRPVHD--DILIAQLRPGQEIDLLMHCVKGIGKDHAKF 222
Query: 265 SPVATAWYRMLPEIVLLEDVEDEDAEKLVKTCPVNVFDIEDIGSGKKRATVAQPRACTLC 324
SPVATA YR+LP+I LLE VE E AE+L + V ++++I GKK A VA PR T
Sbjct: 223 SPVATASYRLLPDITLLEPVEGEAAEELSRCFSPGVIEVQEI-QGKKVARVANPRLDTFS 281
Query: 325 RECLRCGEEWEKRVSIRRVKDHFI 348
RE R E+ +K V + RV+DHFI
Sbjct: 282 REVFR-NEKLKKVVRLARVRDHFI 304
>gi|303277947|ref|XP_003058267.1| predicted protein [Micromonas pusilla CCMP1545]
gi|226460924|gb|EEH58218.1| predicted protein [Micromonas pusilla CCMP1545]
Length = 410
Score = 256 bits (655), Expect = 1e-65, Method: Compositional matrix adjust.
Identities = 157/355 (44%), Positives = 201/355 (56%), Gaps = 50/355 (14%)
Query: 32 IEFQRTRVQCNLDAPIHTENVMYSGAYASMGVDNSLQLDHFCNNFRVEVIRLTKDDMEFD 91
I+ Q+ V C D H YSGAYA++G+D++ + F + F++EV L + +EF+
Sbjct: 35 IQKQKAFVTCASDENKHVNEHAYSGAYAALGIDSAFTAEKFRDEFKLEVTHLDDEKVEFE 94
Query: 92 LIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRLGLIPIIVDPRLFEY 151
+ G+ AIANAFRRILIAE+PTMAIEKV + NNTSVIQDEV AHRLGLIPI DPRLF+
Sbjct: 95 MQGLSPAIANAFRRILIAEVPTMAIEKVFMVNNTSVIQDEVFAHRLGLIPIRADPRLFDL 154
Query: 152 MSENDTSNEKNTIVFKLHVLCER----GGPRLT-----VKTNELKWLPNGSELPLETKPD 202
E DT EKNTIVFK+ V C R G + V T+ L WLPNGSELP PD
Sbjct: 155 RGEGDTPTEKNTIVFKMCVKCTREKTTDGTKGALINDKVYTDSLVWLPNGSELP----PD 210
Query: 203 SNPSSKPRTYTSFSSSQ-DLLPE-------------FSNNPIRPML------DITIARLG 242
+T FS Q + L + F+ N P + DI + ++
Sbjct: 211 EETK-----FTQFSCDQGEYLKKRNKESKELGEKEYFNRNGKDPNVISTVHDDILLVKMV 265
Query: 243 PGQEIELEAHAVKGIGKTHAKWSPVATAWYRMLPEIVLLED-VEDEDAEKLVKTCPVNVF 301
GQEIELEAH KG GK HAKWSPV T WYRM+P++ + EDA+ ++ C F
Sbjct: 266 AGQEIELEAHCTKGDGKEHAKWSPVGTTWYRMVPQVTFPSGPLTGEDADVFMRECA--DF 323
Query: 302 D-----IEDIGSGKKRATVAQPRACTLCRECLRC--GE-EWEKRVSIRRVKDHFI 348
D E +GS +R R C C E +R GE WE++V + + KDHFI
Sbjct: 324 DDAHACYERVGS-DRRVVAKNERGCEFCVERVRALSGEPGWEEKVQLLKKKDHFI 377
>gi|149732228|ref|XP_001502091.1| PREDICTED: DNA-directed RNA polymerases I and III subunit RPAC1
[Equus caballus]
Length = 346
Score = 256 bits (653), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 143/303 (47%), Positives = 197/303 (65%), Gaps = 20/303 (6%)
Query: 47 IHTENVMYSGAYASMGVDNSLQLDHFCNNFRVEVIRLTKDDMEFDLIGIDAAIANAFRRI 106
+HT + + G Y+ G D++ DHF NFRV+V+ + ++ +EFD++GIDAAIANAFRRI
Sbjct: 24 VHTTD--FPGNYS--GYDDAWDQDHFEKNFRVDVVHMDENSLEFDMVGIDAAIANAFRRI 79
Query: 107 LIAELPTMAIEKVLIANNTSVIQDEVLAHRLGLIPIIVDPRLFEYMSEND-TSNEKNTIV 165
L+AE+PTMA+EKVL+ NNTS++QDE+LAHRLGLIPI VDPRLFEY ++ D E +T+
Sbjct: 80 LLAEVPTMAVEKVLVYNNTSIVQDEILAHRLGLIPIHVDPRLFEYRNQGDEEGTEIDTLQ 139
Query: 166 FKLHVLCERGGPRLTVKTNELKWLPNGSELPLETKPDSNPSSKPRTYTSFSSSQDLLPEF 225
F+L V C R P +++ P E + ++ + + DL PE
Sbjct: 140 FRLQVRCTR-NPHAAKDSSD----------PSELYVNHKVYTRHMIWVPLGNQADLFPEG 188
Query: 226 SNNPIRPMLDITIARLGPGQEIELEAHAVKGIGKTHAKWSPVATAWYRMLPEIVLLEDVE 285
+ P+ DI IA+L PGQEI+L H VKGIGK HAK+SPVATA YR+LP+I LLE VE
Sbjct: 189 TIRPVHD--DILIAQLRPGQEIDLLMHCVKGIGKDHAKFSPVATASYRLLPDITLLEPVE 246
Query: 286 DEDAEKLVKTCPVNVFDIEDIGSGKKRATVAQPRACTLCRECLRCGEEWEKRVSIRRVKD 345
+ AE+L + V +++++ GKK A VA PR T RE R E+ +K V + RV+D
Sbjct: 247 GDAAEELSRCFSPGVIEVQEV-QGKKVARVANPRLDTFSREVFR-HEKLKKVVRLARVRD 304
Query: 346 HFI 348
H+I
Sbjct: 305 HYI 307
>gi|426250337|ref|XP_004018893.1| PREDICTED: DNA-directed RNA polymerases I and III subunit RPAC1
[Ovis aries]
Length = 346
Score = 254 bits (649), Expect = 4e-65, Method: Compositional matrix adjust.
Identities = 147/318 (46%), Positives = 198/318 (62%), Gaps = 18/318 (5%)
Query: 32 IEFQRTRVQCNLDAPIHTENVMYSGAYASMGVDNSLQLDHFCNNFRVEVIRLTKDDMEFD 91
+E RTRV + + G Y G D++ D F NFRV+V+ + ++ +EFD
Sbjct: 7 VEEMRTRVVLGEFGVRNVHTTDFPGNYC--GYDDAWDQDRFEKNFRVDVVHMDENSLEFD 64
Query: 92 LIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRLGLIPIIVDPRLFEY 151
++GIDAAIANAFRRIL+AE+PTMA+EKVL+ NNTS++QDE+LAHRLGLIPI DPRLFEY
Sbjct: 65 MVGIDAAIANAFRRILLAEVPTMAVEKVLVYNNTSIVQDEILAHRLGLIPIHADPRLFEY 124
Query: 152 MSENDTSN-EKNTIVFKLHVLCERGGPRLTVKTNELKWLPNGSELPLETKPDSNPSSKPR 210
++ D E +T+ F+L V C R P +++ P E + ++
Sbjct: 125 RNQGDEGGTEIDTLQFRLQVRCTR-NPHAAKDSSD----------PNELYVNHRVYTRHM 173
Query: 211 TYTSFSSSQDLLPEFSNNPIRPMLDITIARLGPGQEIELEAHAVKGIGKTHAKWSPVATA 270
T+ + DL PE + P+ DI IA+L PGQEI+L H VKGIGK HAK+SPVATA
Sbjct: 174 TWVPLGNQADLFPEGAIRPVHD--DILIAQLRPGQEIDLLMHCVKGIGKDHAKFSPVATA 231
Query: 271 WYRMLPEIVLLEDVEDEDAEKLVKTCPVNVFDIEDIGSGKKRATVAQPRACTLCRECLRC 330
YR+LP+I LLE VE E AE+L + V ++++I GKK A VA PR T RE R
Sbjct: 232 SYRLLPDITLLEPVEGEAAEELSRCFSPGVIEVQEI-QGKKVARVANPRLDTFSREVFR- 289
Query: 331 GEEWEKRVSIRRVKDHFI 348
E+ +K V + RV+DH+I
Sbjct: 290 NEKLKKVVRLARVRDHYI 307
>gi|57094492|ref|XP_532147.1| PREDICTED: DNA-directed RNA polymerases I and III subunit RPAC1
isoform 1 [Canis lupus familiaris]
Length = 346
Score = 254 bits (649), Expect = 5e-65, Method: Compositional matrix adjust.
Identities = 143/303 (47%), Positives = 197/303 (65%), Gaps = 20/303 (6%)
Query: 47 IHTENVMYSGAYASMGVDNSLQLDHFCNNFRVEVIRLTKDDMEFDLIGIDAAIANAFRRI 106
+HT + + G Y+ G D++ D F NFRV+V+ + ++ +EFD++GIDAAIANAFRRI
Sbjct: 24 VHTTD--FPGNYS--GYDDAWDQDRFEKNFRVDVVHMDENSLEFDMVGIDAAIANAFRRI 79
Query: 107 LIAELPTMAIEKVLIANNTSVIQDEVLAHRLGLIPIIVDPRLFEYMSE-NDTSNEKNTIV 165
L+AE+PTMA+EKVL+ NNTS++QDE+LAHRLGLIPI DPRLFEY ++ +D E +T+
Sbjct: 80 LLAEVPTMAVEKVLVYNNTSIVQDEILAHRLGLIPIHADPRLFEYRNQGDDEGTEIDTLQ 139
Query: 166 FKLHVLCERGGPRLTVKTNELKWLPNGSELPLETKPDSNPSSKPRTYTSFSSSQDLLPEF 225
F+L V C R P +++ P E + S+ T+ + DL PE
Sbjct: 140 FRLQVRCTR-NPHAAKDSSD----------PNELYVNHKVYSRHMTWVPLGNQADLFPEG 188
Query: 226 SNNPIRPMLDITIARLGPGQEIELEAHAVKGIGKTHAKWSPVATAWYRMLPEIVLLEDVE 285
+ P+ DI IA+L PGQEI+L H VKGIGK HAK+SPVATA YR+LP+I LLE VE
Sbjct: 189 TIRPVHD--DILIAQLRPGQEIDLLMHCVKGIGKDHAKFSPVATASYRLLPDITLLEPVE 246
Query: 286 DEDAEKLVKTCPVNVFDIEDIGSGKKRATVAQPRACTLCRECLRCGEEWEKRVSIRRVKD 345
+ AE+L + V +++++ GKK A VA PR T RE R E+ +K V + RV+D
Sbjct: 247 GDAAEELSRCFSPGVIEVQEV-QGKKVARVANPRLDTFSREVFR-KEKLKKVVRLARVRD 304
Query: 346 HFI 348
H+I
Sbjct: 305 HYI 307
>gi|444725444|gb|ELW66008.1| DNA-directed RNA polymerases I and III subunit RPAC1 [Tupaia
chinensis]
Length = 346
Score = 253 bits (647), Expect = 7e-65, Method: Compositional matrix adjust.
Identities = 143/303 (47%), Positives = 196/303 (64%), Gaps = 20/303 (6%)
Query: 47 IHTENVMYSGAYASMGVDNSLQLDHFCNNFRVEVIRLTKDDMEFDLIGIDAAIANAFRRI 106
+HT + + G Y+ G D++ D F NFRV+V+ + ++ +EFD++GIDAAIANAFRRI
Sbjct: 24 VHTTD--FPGNYS--GYDDAWDQDRFEKNFRVDVVHMDENSLEFDMVGIDAAIANAFRRI 79
Query: 107 LIAELPTMAIEKVLIANNTSVIQDEVLAHRLGLIPIIVDPRLFEYMSEND-TSNEKNTIV 165
L+AE+PTMA+EKVL+ NNTS++QDE+LAHRLGLIPI DPRLFEY ++ D E +T+
Sbjct: 80 LLAEVPTMAVEKVLVYNNTSIVQDEILAHRLGLIPIHADPRLFEYRNQEDEEGTEIDTLQ 139
Query: 166 FKLHVLCERGGPRLTVKTNELKWLPNGSELPLETKPDSNPSSKPRTYTSFSSSQDLLPEF 225
F+L V C R P +++ P E + ++ T+ + DL PE
Sbjct: 140 FRLQVRCTR-NPHAAKDSSD----------PNELYVNHKVYTRHMTWVPLGNQADLFPEG 188
Query: 226 SNNPIRPMLDITIARLGPGQEIELEAHAVKGIGKTHAKWSPVATAWYRMLPEIVLLEDVE 285
+ P+ DI IA+L PGQEI+L H VKGIGK HAK+SPVATA YR+LP+I LLE VE
Sbjct: 189 TIRPVHD--DILIAQLRPGQEIDLLMHCVKGIGKDHAKFSPVATASYRLLPDITLLEPVE 246
Query: 286 DEDAEKLVKTCPVNVFDIEDIGSGKKRATVAQPRACTLCRECLRCGEEWEKRVSIRRVKD 345
E AE+L + V +++++ GKK A VA PR T RE R E+ +K V + RV+D
Sbjct: 247 GEAAEELSRCFSPGVIEVQEV-QGKKVARVANPRLDTFSREVFR-NEKLKKVVRLARVRD 304
Query: 346 HFI 348
H+I
Sbjct: 305 HYI 307
>gi|42560246|ref|NP_976035.1| DNA-directed RNA polymerases I and III subunit RPAC1 [Homo sapiens]
gi|332824144|ref|XP_001136605.2| PREDICTED: DNA-directed RNA polymerases I and III subunit RPAC1
isoform 1 [Pan troglodytes]
gi|397526795|ref|XP_003833302.1| PREDICTED: DNA-directed RNA polymerases I and III subunit RPAC1
[Pan paniscus]
gi|426353284|ref|XP_004044127.1| PREDICTED: DNA-directed RNA polymerases I and III subunit RPAC1
[Gorilla gorilla gorilla]
gi|3914807|sp|O15160.1|RPAC1_HUMAN RecName: Full=DNA-directed RNA polymerases I and III subunit RPAC1;
Short=DNA-directed RNA polymerase I subunit C; Short=RNA
polymerases I and III subunit AC1; AltName: Full=AC40;
AltName: Full=DNA-directed RNA polymerases I and III 40
kDa polypeptide; Short=RPA40; AltName: Full=RPA39;
AltName: Full=RPC40
gi|2266929|gb|AAC14354.1| RNA polymerase I subunit hRPA39 [Homo sapiens]
gi|14250788|gb|AAH08863.1| Polymerase (RNA) I polypeptide C, 30kDa [Homo sapiens]
gi|119624610|gb|EAX04205.1| polymerase (RNA) I polypeptide C, 30kDa, isoform CRA_b [Homo
sapiens]
gi|261858766|dbj|BAI45905.1| polymerase (RNA) I polypeptide C, 30kDa [synthetic construct]
gi|312152392|gb|ADQ32708.1| polymerase (RNA) I polypeptide C, 30kDa [synthetic construct]
gi|410212776|gb|JAA03607.1| polymerase (RNA) I polypeptide C, 30kDa [Pan troglodytes]
gi|410248096|gb|JAA12015.1| polymerase (RNA) I polypeptide C, 30kDa [Pan troglodytes]
gi|410296802|gb|JAA27001.1| polymerase (RNA) I polypeptide C, 30kDa [Pan troglodytes]
gi|410337835|gb|JAA37864.1| polymerase (RNA) I polypeptide C, 30kDa [Pan troglodytes]
Length = 346
Score = 253 bits (647), Expect = 7e-65, Method: Compositional matrix adjust.
Identities = 143/303 (47%), Positives = 196/303 (64%), Gaps = 20/303 (6%)
Query: 47 IHTENVMYSGAYASMGVDNSLQLDHFCNNFRVEVIRLTKDDMEFDLIGIDAAIANAFRRI 106
+HT + + G Y+ G D++ D F NFRV+V+ + ++ +EFD++GIDAAIANAFRRI
Sbjct: 24 VHTTD--FPGNYS--GYDDAWDQDRFEKNFRVDVVHMDENSLEFDMVGIDAAIANAFRRI 79
Query: 107 LIAELPTMAIEKVLIANNTSVIQDEVLAHRLGLIPIIVDPRLFEYMSEND-TSNEKNTIV 165
L+AE+PTMA+EKVL+ NNTS++QDE+LAHRLGLIPI DPRLFEY ++ D E +T+
Sbjct: 80 LLAEVPTMAVEKVLVYNNTSIVQDEILAHRLGLIPIHADPRLFEYRNQGDEEGTEIDTLQ 139
Query: 166 FKLHVLCERGGPRLTVKTNELKWLPNGSELPLETKPDSNPSSKPRTYTSFSSSQDLLPEF 225
F+L V C R P +++ P E + ++ T+ + DL PE
Sbjct: 140 FRLQVRCTR-NPHAAKDSSD----------PNELYVNHKVYTRHMTWIPLGNQADLFPEG 188
Query: 226 SNNPIRPMLDITIARLGPGQEIELEAHAVKGIGKTHAKWSPVATAWYRMLPEIVLLEDVE 285
+ P+ DI IA+L PGQEI+L H VKGIGK HAK+SPVATA YR+LP+I LLE VE
Sbjct: 189 TIRPVHD--DILIAQLRPGQEIDLLMHCVKGIGKDHAKFSPVATASYRLLPDITLLEPVE 246
Query: 286 DEDAEKLVKTCPVNVFDIEDIGSGKKRATVAQPRACTLCRECLRCGEEWEKRVSIRRVKD 345
E AE+L + V +++++ GKK A VA PR T RE R E+ +K V + RV+D
Sbjct: 247 GEAAEELSRCFSPGVIEVQEV-QGKKVARVANPRLDTFSREIFR-NEKLKKVVRLARVRD 304
Query: 346 HFI 348
H+I
Sbjct: 305 HYI 307
>gi|297678210|ref|XP_002816974.1| PREDICTED: DNA-directed RNA polymerases I and III subunit RPAC1
[Pongo abelii]
Length = 346
Score = 253 bits (647), Expect = 8e-65, Method: Compositional matrix adjust.
Identities = 143/303 (47%), Positives = 196/303 (64%), Gaps = 20/303 (6%)
Query: 47 IHTENVMYSGAYASMGVDNSLQLDHFCNNFRVEVIRLTKDDMEFDLIGIDAAIANAFRRI 106
+HT + + G Y+ G D++ D F NFRV+V+ + ++ +EFD++GIDAAIANAFRRI
Sbjct: 24 VHTTD--FPGNYS--GYDDAWDQDRFEKNFRVDVVHMDENSLEFDMVGIDAAIANAFRRI 79
Query: 107 LIAELPTMAIEKVLIANNTSVIQDEVLAHRLGLIPIIVDPRLFEYMSEND-TSNEKNTIV 165
L+AE+PTMA+EKVL+ NNTS++QDE+LAHRLGLIPI DPRLFEY ++ D E +T+
Sbjct: 80 LLAEVPTMAVEKVLVYNNTSIVQDEILAHRLGLIPIHADPRLFEYRNQGDEEGTEIDTLQ 139
Query: 166 FKLHVLCERGGPRLTVKTNELKWLPNGSELPLETKPDSNPSSKPRTYTSFSSSQDLLPEF 225
F+L V C R P +++ P E + ++ T+ + DL PE
Sbjct: 140 FRLQVRCTR-NPHAAKDSSD----------PNELYVNHKVYTRHMTWIPLGNQADLFPEG 188
Query: 226 SNNPIRPMLDITIARLGPGQEIELEAHAVKGIGKTHAKWSPVATAWYRMLPEIVLLEDVE 285
+ P+ DI IA+L PGQEI+L H VKGIGK HAK+SPVATA YR+LP+I LLE VE
Sbjct: 189 TIRPVHN--DILIAQLRPGQEIDLLMHCVKGIGKDHAKFSPVATASYRLLPDITLLEPVE 246
Query: 286 DEDAEKLVKTCPVNVFDIEDIGSGKKRATVAQPRACTLCRECLRCGEEWEKRVSIRRVKD 345
E AE+L + V +++++ GKK A VA PR T RE R E+ +K V + RV+D
Sbjct: 247 GEAAEELSRCFSPGVIEVQEV-QGKKVARVANPRLDTFSREIFR-NEKLKKVVRLARVRD 304
Query: 346 HFI 348
H+I
Sbjct: 305 HYI 307
>gi|119226251|ref|NP_033111.2| DNA-directed RNA polymerases I and III subunit RPAC1 [Mus musculus]
gi|341942146|sp|P52432.3|RPAC1_MOUSE RecName: Full=DNA-directed RNA polymerases I and III subunit RPAC1;
Short=DNA-directed RNA polymerase I subunit C; Short=RNA
polymerases I and III subunit AC1; AltName: Full=AC40;
AltName: Full=DNA-directed RNA polymerases I and III 40
kDa polypeptide; Short=RPA40; AltName: Full=RPC40
gi|74205031|dbj|BAE20986.1| unnamed protein product [Mus musculus]
gi|74226711|dbj|BAE27005.1| unnamed protein product [Mus musculus]
gi|148691536|gb|EDL23483.1| RNA polymerase 1-1, isoform CRA_a [Mus musculus]
Length = 346
Score = 253 bits (647), Expect = 8e-65, Method: Compositional matrix adjust.
Identities = 147/321 (45%), Positives = 198/321 (61%), Gaps = 24/321 (7%)
Query: 32 IEFQRTRVQCNLDAPIHTENVMYSGAYASMGVDNSLQLDHFCNNFRVEVIRLTKDDMEFD 91
+E RTRV + + G YA G D++ + F NFRV+V+++ +D +EFD
Sbjct: 7 VEEMRTRVVLGEFGVRNVHTTDFPGNYA--GYDDAWDQNRFEKNFRVDVVQMDEDTLEFD 64
Query: 92 LIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRLGLIPIIVDPRLFEY 151
++GIDAAIANAFRRIL+AE+PTMA+EKVL+ NNTS++QDE+LAHRLGLIPI+ DPRLFEY
Sbjct: 65 MVGIDAAIANAFRRILLAEVPTMAVEKVLVYNNTSIVQDEILAHRLGLIPILADPRLFEY 124
Query: 152 MSEN-DTSNEKNTIVFKLHVLCERGGPRLTVKTNELKWLPNG---SELPLETKPDSNPSS 207
++ + E +T+ F+L V C R PN S P E + +
Sbjct: 125 RNQGEEEGTEIDTLQFRLQVRCTRN--------------PNAAKDSSDPNELYVNHKVYT 170
Query: 208 KPRTYTSFSSSQDLLPEFSNNPIRPMLDITIARLGPGQEIELEAHAVKGIGKTHAKWSPV 267
+ T+ + D+ PE + P+ DI IA+L PGQEI+L H VKGIGK HAK+SPV
Sbjct: 171 RHMTWVPLGNQADVFPEGTIRPVHD--DILIAQLRPGQEIDLMMHCVKGIGKDHAKFSPV 228
Query: 268 ATAWYRMLPEIVLLEDVEDEDAEKLVKTCPVNVFDIEDIGSGKKRATVAQPRACTLCREC 327
ATA YR+LP I LLE VE E AE+L + V ++E++ GKK A VA R T RE
Sbjct: 229 ATASYRLLPAITLLEPVEGEAAEELSQCFSPGVIEVEEV-QGKKVARVANARLDTFSREI 287
Query: 328 LRCGEEWEKRVSIRRVKDHFI 348
R E+ +K V + RV+DH+I
Sbjct: 288 FR-HEKLKKAVRLARVRDHYI 307
>gi|120538451|gb|AAI30019.1| Polr1c protein [Mus musculus]
Length = 347
Score = 253 bits (647), Expect = 8e-65, Method: Compositional matrix adjust.
Identities = 147/321 (45%), Positives = 198/321 (61%), Gaps = 24/321 (7%)
Query: 32 IEFQRTRVQCNLDAPIHTENVMYSGAYASMGVDNSLQLDHFCNNFRVEVIRLTKDDMEFD 91
+E RTRV + + G YA G D++ + F NFRV+V+++ +D +EFD
Sbjct: 8 VEEMRTRVVLGEFGVRNVHTTDFPGNYA--GYDDAWDQNRFEKNFRVDVVQMDEDTLEFD 65
Query: 92 LIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRLGLIPIIVDPRLFEY 151
++GIDAAIANAFRRIL+AE+PTMA+EKVL+ NNTS++QDE+LAHRLGLIPI+ DPRLFEY
Sbjct: 66 MVGIDAAIANAFRRILLAEVPTMAVEKVLVYNNTSIVQDEILAHRLGLIPILADPRLFEY 125
Query: 152 MSEN-DTSNEKNTIVFKLHVLCERGGPRLTVKTNELKWLPNG---SELPLETKPDSNPSS 207
++ + E +T+ F+L V C R PN S P E + +
Sbjct: 126 RNQGEEEGTEIDTLQFRLQVRCTRN--------------PNAAKDSSDPNELYVNHKVYT 171
Query: 208 KPRTYTSFSSSQDLLPEFSNNPIRPMLDITIARLGPGQEIELEAHAVKGIGKTHAKWSPV 267
+ T+ + D+ PE + P+ DI IA+L PGQEI+L H VKGIGK HAK+SPV
Sbjct: 172 RHMTWVPLGNQADVFPEGTIRPVHD--DILIAQLRPGQEIDLMMHCVKGIGKDHAKFSPV 229
Query: 268 ATAWYRMLPEIVLLEDVEDEDAEKLVKTCPVNVFDIEDIGSGKKRATVAQPRACTLCREC 327
ATA YR+LP I LLE VE E AE+L + V ++E++ GKK A VA R T RE
Sbjct: 230 ATASYRLLPAITLLEPVEGEAAEELSQCFSPGVIEVEEV-QGKKVARVANARLDTFSREI 288
Query: 328 LRCGEEWEKRVSIRRVKDHFI 348
R E+ +K V + RV+DH+I
Sbjct: 289 FR-HEKLKKAVRLARVRDHYI 308
>gi|301757344|ref|XP_002914512.1| PREDICTED: DNA-directed RNA polymerases I and III subunit
RPAC1-like [Ailuropoda melanoleuca]
gi|281345711|gb|EFB21295.1| hypothetical protein PANDA_002414 [Ailuropoda melanoleuca]
Length = 346
Score = 253 bits (646), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 143/303 (47%), Positives = 196/303 (64%), Gaps = 20/303 (6%)
Query: 47 IHTENVMYSGAYASMGVDNSLQLDHFCNNFRVEVIRLTKDDMEFDLIGIDAAIANAFRRI 106
+HT + + G Y+ G D++ D F NFRV+V+ L ++ +EFD++GIDAAIANAFRRI
Sbjct: 24 VHTTD--FPGNYS--GYDDAWDQDRFEKNFRVDVVHLDENSLEFDMVGIDAAIANAFRRI 79
Query: 107 LIAELPTMAIEKVLIANNTSVIQDEVLAHRLGLIPIIVDPRLFEYMSEND-TSNEKNTIV 165
L+AE+PTMA+EKVL+ NNTS++QDE+LAHRLGLIPI DPRLFEY ++ D E +T+
Sbjct: 80 LLAEVPTMAVEKVLVYNNTSIVQDEILAHRLGLIPIHADPRLFEYRNQGDEEGTEIDTLQ 139
Query: 166 FKLHVLCERGGPRLTVKTNELKWLPNGSELPLETKPDSNPSSKPRTYTSFSSSQDLLPEF 225
F+L V C R P +++ P E + ++ T+ + DL PE
Sbjct: 140 FRLQVRCTR-NPHAAKDSSD----------PNELYVNHKVYTRHMTWVPLGNQADLFPEG 188
Query: 226 SNNPIRPMLDITIARLGPGQEIELEAHAVKGIGKTHAKWSPVATAWYRMLPEIVLLEDVE 285
+ P+ DI IA+L PGQEI+L H VKGIGK HAK+SPVATA YR+LP+I LLE VE
Sbjct: 189 AIRPVHD--DILIAQLRPGQEIDLLMHCVKGIGKDHAKFSPVATASYRLLPDITLLEPVE 246
Query: 286 DEDAEKLVKTCPVNVFDIEDIGSGKKRATVAQPRACTLCRECLRCGEEWEKRVSIRRVKD 345
E AE+L + V +++++ G+K A VA PR T RE R E+ +K V + RV+D
Sbjct: 247 GEAAEELSRCFSPGVIEVQEV-QGEKVARVANPRLDTFSREVFR-NEKLKKMVRLARVRD 304
Query: 346 HFI 348
H+I
Sbjct: 305 HYI 307
>gi|14198113|gb|AAH08118.1| POLR1C protein, partial [Homo sapiens]
Length = 338
Score = 253 bits (646), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 143/303 (47%), Positives = 196/303 (64%), Gaps = 20/303 (6%)
Query: 47 IHTENVMYSGAYASMGVDNSLQLDHFCNNFRVEVIRLTKDDMEFDLIGIDAAIANAFRRI 106
+HT + + G Y+ G D++ D F NFRV+V+ + ++ +EFD++GIDAAIANAFRRI
Sbjct: 16 VHTTD--FPGNYS--GYDDAWDQDRFEKNFRVDVVHMDENSLEFDMVGIDAAIANAFRRI 71
Query: 107 LIAELPTMAIEKVLIANNTSVIQDEVLAHRLGLIPIIVDPRLFEYMSEND-TSNEKNTIV 165
L+AE+PTMA+EKVL+ NNTS++QDE+LAHRLGLIPI DPRLFEY ++ D E +T+
Sbjct: 72 LLAEVPTMAVEKVLVYNNTSIVQDEILAHRLGLIPIHADPRLFEYRNQGDEEGTEIDTLQ 131
Query: 166 FKLHVLCERGGPRLTVKTNELKWLPNGSELPLETKPDSNPSSKPRTYTSFSSSQDLLPEF 225
F+L V C R P +++ P E + ++ T+ + DL PE
Sbjct: 132 FRLQVRCTR-NPHAAKDSSD----------PNELYVNHKVYTRHMTWIPLGNQADLFPEG 180
Query: 226 SNNPIRPMLDITIARLGPGQEIELEAHAVKGIGKTHAKWSPVATAWYRMLPEIVLLEDVE 285
+ P+ DI IA+L PGQEI+L H VKGIGK HAK+SPVATA YR+LP+I LLE VE
Sbjct: 181 TIRPVHD--DILIAQLRPGQEIDLLMHCVKGIGKDHAKFSPVATASYRLLPDITLLEPVE 238
Query: 286 DEDAEKLVKTCPVNVFDIEDIGSGKKRATVAQPRACTLCRECLRCGEEWEKRVSIRRVKD 345
E AE+L + V +++++ GKK A VA PR T RE R E+ +K V + RV+D
Sbjct: 239 GEAAEELSRCFSPGVIEVQEV-QGKKVARVANPRLDTFSREIFR-NEKLKKVVRLARVRD 296
Query: 346 HFI 348
H+I
Sbjct: 297 HYI 299
>gi|355561732|gb|EHH18364.1| hypothetical protein EGK_14941 [Macaca mulatta]
gi|355763424|gb|EHH62170.1| hypothetical protein EGM_20381 [Macaca fascicularis]
gi|380818186|gb|AFE80967.1| DNA-directed RNA polymerases I and III subunit RPAC1 [Macaca
mulatta]
gi|384950476|gb|AFI38843.1| DNA-directed RNA polymerases I and III subunit RPAC1 [Macaca
mulatta]
Length = 346
Score = 253 bits (646), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 143/303 (47%), Positives = 196/303 (64%), Gaps = 20/303 (6%)
Query: 47 IHTENVMYSGAYASMGVDNSLQLDHFCNNFRVEVIRLTKDDMEFDLIGIDAAIANAFRRI 106
+HT + + G Y+ G D++ D F NFRV+V+ + ++ +EFD++GIDAAIANAFRRI
Sbjct: 24 VHTTD--FPGNYS--GYDDAWDQDRFEKNFRVDVVHMDENSLEFDMVGIDAAIANAFRRI 79
Query: 107 LIAELPTMAIEKVLIANNTSVIQDEVLAHRLGLIPIIVDPRLFEYMSEND-TSNEKNTIV 165
L+AE+PTMA+EKVL+ NNTS++QDE+LAHRLGLIPI DPRLFEY ++ D E +T+
Sbjct: 80 LLAEVPTMAVEKVLVYNNTSIVQDEILAHRLGLIPIHADPRLFEYRNQGDEDGTEIDTLR 139
Query: 166 FKLHVLCERGGPRLTVKTNELKWLPNGSELPLETKPDSNPSSKPRTYTSFSSSQDLLPEF 225
F+L V C R P +++ P E + ++ T+ + DL PE
Sbjct: 140 FRLQVRCTR-NPHAAKDSSD----------PNELYVNHKVYTRHMTWIPLGNQADLFPEG 188
Query: 226 SNNPIRPMLDITIARLGPGQEIELEAHAVKGIGKTHAKWSPVATAWYRMLPEIVLLEDVE 285
+ P+ DI IA+L PGQEI+L H VKGIGK HAK+SPVATA YR+LP+I LLE VE
Sbjct: 189 TIRPVHD--DILIAQLRPGQEIDLLMHCVKGIGKDHAKFSPVATASYRLLPDITLLEPVE 246
Query: 286 DEDAEKLVKTCPVNVFDIEDIGSGKKRATVAQPRACTLCRECLRCGEEWEKRVSIRRVKD 345
E AE+L + V +++++ GKK A VA PR T RE R E+ +K V + RV+D
Sbjct: 247 GEAAEELSRCFSPGVIEVQEV-QGKKVARVANPRLDTFSREIFR-HEKLKKVVRLARVRD 304
Query: 346 HFI 348
H+I
Sbjct: 305 HYI 307
>gi|410959240|ref|XP_003986220.1| PREDICTED: DNA-directed RNA polymerases I and III subunit RPAC1
[Felis catus]
Length = 346
Score = 253 bits (645), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 146/318 (45%), Positives = 199/318 (62%), Gaps = 18/318 (5%)
Query: 32 IEFQRTRVQCNLDAPIHTENVMYSGAYASMGVDNSLQLDHFCNNFRVEVIRLTKDDMEFD 91
+E RTRV + + G Y+ G D++ D F NFRV+V+ L ++ +EFD
Sbjct: 7 VEEMRTRVVLGEFGVRNVHTTDFPGNYS--GYDDAWDQDCFEKNFRVDVVHLDENSLEFD 64
Query: 92 LIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRLGLIPIIVDPRLFEY 151
++GIDAAIANAFRRIL+AE+PTMA+EKVL+ NNTS++QDE+LAHRLGLIPI DPRLFEY
Sbjct: 65 MVGIDAAIANAFRRILLAEVPTMAVEKVLVYNNTSIVQDEILAHRLGLIPIHADPRLFEY 124
Query: 152 MSEND-TSNEKNTIVFKLHVLCERGGPRLTVKTNELKWLPNGSELPLETKPDSNPSSKPR 210
++ D E +T+ F+L V C R P +++ P E + ++
Sbjct: 125 RNQGDEEGTEIDTLQFRLQVRCTR-NPHAAKDSSD----------PNELYVNHKVYTRHM 173
Query: 211 TYTSFSSSQDLLPEFSNNPIRPMLDITIARLGPGQEIELEAHAVKGIGKTHAKWSPVATA 270
T+ + DL PE + P+ DI IA+L PGQEI+L H VKGIGK HAK+SPVATA
Sbjct: 174 TWVPLGNQADLFPEGTIRPVHD--DILIAQLRPGQEIDLLMHCVKGIGKDHAKFSPVATA 231
Query: 271 WYRMLPEIVLLEDVEDEDAEKLVKTCPVNVFDIEDIGSGKKRATVAQPRACTLCRECLRC 330
YR+LP+I LLE VE + AE+L + V +++++ GKK A VA PR T RE R
Sbjct: 232 SYRLLPDITLLEPVEGDAAEELRRCFSPGVIEVQEV-QGKKVARVANPRLDTFSREVFR- 289
Query: 331 GEEWEKRVSIRRVKDHFI 348
E+ +K V + RV+DH+I
Sbjct: 290 NEKLKKVVRLARVRDHYI 307
>gi|403261372|ref|XP_003923097.1| PREDICTED: DNA-directed RNA polymerases I and III subunit RPAC1
[Saimiri boliviensis boliviensis]
Length = 346
Score = 252 bits (643), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 142/303 (46%), Positives = 196/303 (64%), Gaps = 20/303 (6%)
Query: 47 IHTENVMYSGAYASMGVDNSLQLDHFCNNFRVEVIRLTKDDMEFDLIGIDAAIANAFRRI 106
+HT + + G Y+ G D++ + F NFRV+V+ + ++ +EFD++GIDAAIANAFRRI
Sbjct: 24 VHTTD--FPGNYS--GYDDAWDQERFEKNFRVDVVHMDENSLEFDMVGIDAAIANAFRRI 79
Query: 107 LIAELPTMAIEKVLIANNTSVIQDEVLAHRLGLIPIIVDPRLFEYMSEND-TSNEKNTIV 165
L+AE+PTMA+EKVL+ NNTS++QDE+LAHRLGLIPI DPRLFEY ++ D E +T+
Sbjct: 80 LLAEVPTMAVEKVLVYNNTSIVQDEILAHRLGLIPIHADPRLFEYRNQGDEEGTEIDTLQ 139
Query: 166 FKLHVLCERGGPRLTVKTNELKWLPNGSELPLETKPDSNPSSKPRTYTSFSSSQDLLPEF 225
F+L V C R P +++ P E + ++ T+ + DL PE
Sbjct: 140 FRLQVRCTR-NPHAAKDSSD----------PNELYMNHKVYTRHMTWIPLGNQADLFPEG 188
Query: 226 SNNPIRPMLDITIARLGPGQEIELEAHAVKGIGKTHAKWSPVATAWYRMLPEIVLLEDVE 285
+ P+ DI IA+L PGQEI+L H VKGIGK HAK+SPVATA YR+LP+I LLE VE
Sbjct: 189 TIRPVHD--DILIAQLRPGQEIDLLMHCVKGIGKDHAKFSPVATASYRLLPDITLLEPVE 246
Query: 286 DEDAEKLVKTCPVNVFDIEDIGSGKKRATVAQPRACTLCRECLRCGEEWEKRVSIRRVKD 345
E AE+L + V +++++ GKK A VA PR T RE R E+ +K V + RV+D
Sbjct: 247 GEAAEELSRCFSPGVIEVQEV-QGKKVARVANPRLDTFSREIFR-NEKLKKAVRLARVRD 304
Query: 346 HFI 348
H+I
Sbjct: 305 HYI 307
>gi|332234165|ref|XP_003266281.1| PREDICTED: DNA-directed RNA polymerases I and III subunit RPAC1
[Nomascus leucogenys]
Length = 346
Score = 251 bits (642), Expect = 3e-64, Method: Compositional matrix adjust.
Identities = 142/303 (46%), Positives = 196/303 (64%), Gaps = 20/303 (6%)
Query: 47 IHTENVMYSGAYASMGVDNSLQLDHFCNNFRVEVIRLTKDDMEFDLIGIDAAIANAFRRI 106
+HT + + G Y+ G D++ + F NFRV+V+ + ++ +EFD++GIDAAIANAFRRI
Sbjct: 24 VHTTD--FPGNYS--GYDDAWDQERFEKNFRVDVVHMDENSLEFDMVGIDAAIANAFRRI 79
Query: 107 LIAELPTMAIEKVLIANNTSVIQDEVLAHRLGLIPIIVDPRLFEYMSEND-TSNEKNTIV 165
L+AE+PTMA+EKVL+ NNTS++QDE+LAHRLGLIPI DPRLFEY ++ D E +T+
Sbjct: 80 LLAEVPTMAVEKVLVYNNTSIVQDEILAHRLGLIPIHADPRLFEYRNQGDEEGTEIDTLQ 139
Query: 166 FKLHVLCERGGPRLTVKTNELKWLPNGSELPLETKPDSNPSSKPRTYTSFSSSQDLLPEF 225
F+L V C R P +++ P E + ++ T+ + DL PE
Sbjct: 140 FRLQVRCTR-NPHAAKDSSD----------PNELYVNHKVYTRHMTWIPLGNQADLFPEG 188
Query: 226 SNNPIRPMLDITIARLGPGQEIELEAHAVKGIGKTHAKWSPVATAWYRMLPEIVLLEDVE 285
+ P+ DI IA+L PGQEI+L H VKGIGK HAK+SPVATA YR+LP+I LLE VE
Sbjct: 189 TIRPVHD--DILIAQLRPGQEIDLLMHCVKGIGKDHAKFSPVATASYRLLPDITLLEPVE 246
Query: 286 DEDAEKLVKTCPVNVFDIEDIGSGKKRATVAQPRACTLCRECLRCGEEWEKRVSIRRVKD 345
E AE+L + V +++++ GKK A VA PR T RE R E+ +K V + RV+D
Sbjct: 247 GEAAEELSRCFSPGVIEVQEV-QGKKVARVANPRLDTFSREIFR-NEKLKKVVRLARVRD 304
Query: 346 HFI 348
H+I
Sbjct: 305 HYI 307
>gi|417409912|gb|JAA51445.1| Putative rna polymerase i and iii subunit, partial [Desmodus
rotundus]
Length = 347
Score = 251 bits (642), Expect = 3e-64, Method: Compositional matrix adjust.
Identities = 142/303 (46%), Positives = 192/303 (63%), Gaps = 20/303 (6%)
Query: 47 IHTENVMYSGAYASMGVDNSLQLDHFCNNFRVEVIRLTKDDMEFDLIGIDAAIANAFRRI 106
+HT + + G Y+ G D++ D F NFRV+VI + ++ +EFD++GIDAAIANAFRR+
Sbjct: 25 VHTTD--FPGNYS--GYDDAWDQDRFEKNFRVDVIHMDENTLEFDMVGIDAAIANAFRRV 80
Query: 107 LIAELPTMAIEKVLIANNTSVIQDEVLAHRLGLIPIIVDPRLFEYMSEND-TSNEKNTIV 165
L+AE+PTMA+EKVL+ NNTS++QDE+LAHRLGLIPI DPRLFEY ++ D E +T+
Sbjct: 81 LLAEVPTMAVEKVLVYNNTSIVQDEILAHRLGLIPIHADPRLFEYRNQGDEEGTEIDTLQ 140
Query: 166 FKLHVLCERGGPRLTVKTNELKWLPNGSELPLETKPDSNPSSKPRTYTSFSSSQDLLPEF 225
F+L V C R S P E + ++ T+ + DL P+
Sbjct: 141 FRLQVRCTRNS-----------HAAKDSSDPNELYVNHKVYTRHMTWVPLGNQADLFPDG 189
Query: 226 SNNPIRPMLDITIARLGPGQEIELEAHAVKGIGKTHAKWSPVATAWYRMLPEIVLLEDVE 285
+ P+ DI IA+L PGQEI+L H VKGIGK HAK+SPVATA YR+LP+I LLE VE
Sbjct: 190 TIRPVHD--DILIAQLRPGQEIDLLMHCVKGIGKDHAKFSPVATASYRLLPDITLLEPVE 247
Query: 286 DEDAEKLVKTCPVNVFDIEDIGSGKKRATVAQPRACTLCRECLRCGEEWEKRVSIRRVKD 345
E AE+L + V ++ ++ GKK A VA PR T RE R E+ +K V + RV+D
Sbjct: 248 GEAAEELRRCFSPGVIEVHEV-QGKKVARVANPRLDTFSREVFR-NEKLKKVVRLARVRD 305
Query: 346 HFI 348
H+I
Sbjct: 306 HYI 308
>gi|402867078|ref|XP_003897695.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed RNA polymerases I and
III subunit RPAC1 [Papio anubis]
Length = 346
Score = 251 bits (642), Expect = 3e-64, Method: Compositional matrix adjust.
Identities = 143/303 (47%), Positives = 195/303 (64%), Gaps = 20/303 (6%)
Query: 47 IHTENVMYSGAYASMGVDNSLQLDHFCNNFRVEVIRLTKDDMEFDLIGIDAAIANAFRRI 106
+HT + + G Y+ G D++ D F NNFRV+V+ + ++ +EFD++GIDAAIANAFRRI
Sbjct: 24 VHTTD--FPGNYS--GYDDAWDQDRFENNFRVDVVHMDENSLEFDMVGIDAAIANAFRRI 79
Query: 107 LIAELPTMAIEKVLIANNTSVIQDEVLAHRLGLIPIIVDPRLFEYMSEND-TSNEKNTIV 165
L+AE+PTMA+EKVL+ NNTS++QDE+LAHRLGLIPI DPRLFEY ++ D E +T+
Sbjct: 80 LLAEVPTMAVEKVLVYNNTSIVQDEILAHRLGLIPIHADPRLFEYRNQGDEDGTEIDTLQ 139
Query: 166 FKLHVLCERGGPRLTVKTNELKWLPNGSELPLETKPDSNPSSKPRTYTSFSSSQDLLPEF 225
F+L V C R P +++ P E + ++ T+ + DL PE
Sbjct: 140 FRLQVRCTR-NPHAAKDSSD----------PNELYVNHKVYTRHMTWIPLGNQADLFPEG 188
Query: 226 SNNPIRPMLDITIARLGPGQEIELEAHAVKGIGKTHAKWSPVATAWYRMLPEIVLLEDVE 285
+ P+ DI IA+L PGQEI+L H VKGIG HAK SPVATA YR+LP+I LLE VE
Sbjct: 189 TIRPVHD--DILIAQLRPGQEIDLLMHCVKGIGNDHAKISPVATASYRLLPDITLLEPVE 246
Query: 286 DEDAEKLVKTCPVNVFDIEDIGSGKKRATVAQPRACTLCRECLRCGEEWEKRVSIRRVKD 345
E AE+L + V +++++ GKK A VA PR T RE R E+ +K V + RV+D
Sbjct: 247 GEAAEELSRCFSPGVIEVQEV-QGKKVARVANPRLDTFSREIFR-HEKLKKVVRLARVRD 304
Query: 346 HFI 348
H+I
Sbjct: 305 HYI 307
>gi|148691537|gb|EDL23484.1| RNA polymerase 1-1, isoform CRA_b [Mus musculus]
Length = 323
Score = 251 bits (642), Expect = 3e-64, Method: Compositional matrix adjust.
Identities = 144/306 (47%), Positives = 195/306 (63%), Gaps = 26/306 (8%)
Query: 47 IHTENVMYSGAYASMGVDNSLQLDHFCNNFRVEVIRLTKDDMEFDLIGIDAAIANAFRRI 106
+HT + + G YA G D++ + F NFRV+V+++ +D +EFD++GIDAAIANAFRRI
Sbjct: 1 VHTTD--FPGNYA--GYDDAWDQNRFEKNFRVDVVQMDEDTLEFDMVGIDAAIANAFRRI 56
Query: 107 LIAELPTMAIEKVLIANNTSVIQDEVLAHRLGLIPIIVDPRLFEYMSEN-DTSNEKNTIV 165
L+AE+PTMA+EKVL+ NNTS++QDE+LAHRLGLIPI+ DPRLFEY ++ + E +T+
Sbjct: 57 LLAEVPTMAVEKVLVYNNTSIVQDEILAHRLGLIPILADPRLFEYRNQGEEEGTEIDTLQ 116
Query: 166 FKLHVLCERGGPRLTVKTNELKWLPNG---SELPLETKPDSNPSSKPRTYTSFSSSQDLL 222
F+L V C R PN S P E + ++ T+ + D+
Sbjct: 117 FRLQVRCTRN--------------PNAAKDSSDPNELYVNHKVYTRHMTWVPLGNQADVF 162
Query: 223 PEFSNNPIRPMLDITIARLGPGQEIELEAHAVKGIGKTHAKWSPVATAWYRMLPEIVLLE 282
PE + P+ DI IA+L PGQEI+L H VKGIGK HAK+SPVATA YR+LP I LLE
Sbjct: 163 PEGTIRPVHD--DILIAQLRPGQEIDLMMHCVKGIGKDHAKFSPVATASYRLLPAITLLE 220
Query: 283 DVEDEDAEKLVKTCPVNVFDIEDIGSGKKRATVAQPRACTLCRECLRCGEEWEKRVSIRR 342
VE E AE+L + V ++E++ GKK A VA R T RE R E+ +K V + R
Sbjct: 221 PVEGEAAEELSQCFSPGVIEVEEV-QGKKVARVANARLDTFSREIFR-HEKLKKAVRLAR 278
Query: 343 VKDHFI 348
V+DH+I
Sbjct: 279 VRDHYI 284
>gi|355712707|gb|AES04439.1| polymerase I polypeptide C, 30kDa [Mustela putorius furo]
Length = 305
Score = 251 bits (641), Expect = 4e-64, Method: Compositional matrix adjust.
Identities = 142/302 (47%), Positives = 195/302 (64%), Gaps = 20/302 (6%)
Query: 47 IHTENVMYSGAYASMGVDNSLQLDHFCNNFRVEVIRLTKDDMEFDLIGIDAAIANAFRRI 106
+HT + + G Y+ G D++ + F NFRV+V+ L ++ +EFD++GIDAAIANAFRRI
Sbjct: 23 VHTTD--FPGNYS--GYDDAWDQNRFEKNFRVDVVHLDENSLEFDMVGIDAAIANAFRRI 78
Query: 107 LIAELPTMAIEKVLIANNTSVIQDEVLAHRLGLIPIIVDPRLFEYMSEND-TSNEKNTIV 165
L+AE+PTMA+EKVL+ NNTS++QDE+LAHRLGLIPI DPRLFEY ++ D E +T+
Sbjct: 79 LLAEVPTMAVEKVLVYNNTSIVQDEILAHRLGLIPIHADPRLFEYRNQGDEEGTEIDTLQ 138
Query: 166 FKLHVLCERGGPRLTVKTNELKWLPNGSELPLETKPDSNPSSKPRTYTSFSSSQDLLPEF 225
F+L V C R P +++ P E + ++ T+ + DL PE
Sbjct: 139 FRLQVRCTR-NPHAAKDSSD----------PNELYVNHKVYTRHMTWVPLGNQADLFPEG 187
Query: 226 SNNPIRPMLDITIARLGPGQEIELEAHAVKGIGKTHAKWSPVATAWYRMLPEIVLLEDVE 285
+ P+ DI IA+L PGQEI+L H VKGIGK HAK+SPVATA YR+LP+I LLE VE
Sbjct: 188 TIRPVHD--DILIAQLRPGQEIDLLMHCVKGIGKDHAKFSPVATASYRLLPDITLLEPVE 245
Query: 286 DEDAEKLVKTCPVNVFDIEDIGSGKKRATVAQPRACTLCRECLRCGEEWEKRVSIRRVKD 345
E AE+L + V +++++ GKK A VA PR T RE R E+ +K V + RV+D
Sbjct: 246 GEAAEELSRCFSPGVIEVQEV-QGKKVARVANPRLDTFSREVFR-NEKLKKLVRLARVRD 303
Query: 346 HF 347
H+
Sbjct: 304 HY 305
>gi|431838337|gb|ELK00269.1| DNA-directed RNA polymerases I and III subunit RPAC1 [Pteropus
alecto]
Length = 346
Score = 251 bits (641), Expect = 4e-64, Method: Compositional matrix adjust.
Identities = 142/303 (46%), Positives = 195/303 (64%), Gaps = 20/303 (6%)
Query: 47 IHTENVMYSGAYASMGVDNSLQLDHFCNNFRVEVIRLTKDDMEFDLIGIDAAIANAFRRI 106
+HT + + G Y+ G D++ D F +FRV+V+ + ++ +EFD++GIDAAIANAFRRI
Sbjct: 24 VHTTD--FPGNYS--GYDDAWDQDRFEKSFRVDVVHMDENSLEFDMVGIDAAIANAFRRI 79
Query: 107 LIAELPTMAIEKVLIANNTSVIQDEVLAHRLGLIPIIVDPRLFEYMSEND-TSNEKNTIV 165
L+AE+PTMA+EKVL+ NNTS++QDE+LAHRLGLIPI DPRLFEY ++ D E +T+
Sbjct: 80 LLAEVPTMAVEKVLVYNNTSIVQDEILAHRLGLIPIHADPRLFEYRNQGDEEGTEIDTLQ 139
Query: 166 FKLHVLCERGGPRLTVKTNELKWLPNGSELPLETKPDSNPSSKPRTYTSFSSSQDLLPEF 225
F+L V C R P +++ P E + ++ T+ + DL PE
Sbjct: 140 FRLQVRCTR-NPHAAKDSSD----------PNELYVNHKVYTRHMTWVPLGNQADLFPEG 188
Query: 226 SNNPIRPMLDITIARLGPGQEIELEAHAVKGIGKTHAKWSPVATAWYRMLPEIVLLEDVE 285
+ P+ DI IA+L PGQEI+L H VKGIGK HAK+SPVATA YR+LP+I LLE VE
Sbjct: 189 TIRPVHD--DILIAQLRPGQEIDLLMHCVKGIGKDHAKFSPVATASYRLLPDITLLEPVE 246
Query: 286 DEDAEKLVKTCPVNVFDIEDIGSGKKRATVAQPRACTLCRECLRCGEEWEKRVSIRRVKD 345
E AE+L + V ++ ++ GKK A VA PR T RE R E+ +K V + RV+D
Sbjct: 247 GEAAEELSRCFSPGVIEVHEV-QGKKVARVANPRLDTFSREVFR-NEKLKKVVRLARVRD 304
Query: 346 HFI 348
H+I
Sbjct: 305 HYI 307
>gi|348576230|ref|XP_003473890.1| PREDICTED: DNA-directed RNA polymerases I and III subunit
RPAC1-like [Cavia porcellus]
Length = 346
Score = 251 bits (640), Expect = 5e-64, Method: Compositional matrix adjust.
Identities = 142/303 (46%), Positives = 195/303 (64%), Gaps = 20/303 (6%)
Query: 47 IHTENVMYSGAYASMGVDNSLQLDHFCNNFRVEVIRLTKDDMEFDLIGIDAAIANAFRRI 106
+HT + + G Y+ G D++ D F NFRV+V+ + ++ +EFD++GIDAAIANAFRRI
Sbjct: 24 VHTTD--FPGNYS--GYDDAWDQDRFEKNFRVDVVHMDENSLEFDMVGIDAAIANAFRRI 79
Query: 107 LIAELPTMAIEKVLIANNTSVIQDEVLAHRLGLIPIIVDPRLFEYMSEND-TSNEKNTIV 165
L+AE+PTMA+EKVL+ NNTS++QDE+LAHRLGLIPI DPRLFE+ +E D E +T+
Sbjct: 80 LLAEVPTMAVEKVLVYNNTSIVQDEILAHRLGLIPIHADPRLFEFRNEGDEEGTEIDTLQ 139
Query: 166 FKLHVLCERGGPRLTVKTNELKWLPNGSELPLETKPDSNPSSKPRTYTSFSSSQDLLPEF 225
F+L V C R P +++ P E + ++ T+ + D+ PE
Sbjct: 140 FRLQVRCTR-NPHAAKDSSD----------PNELYVNHKVYTRHMTWVPLGNQADVFPEG 188
Query: 226 SNNPIRPMLDITIARLGPGQEIELEAHAVKGIGKTHAKWSPVATAWYRMLPEIVLLEDVE 285
+ P+ DI IA+L PGQEI+L H VKGIGK HAK+SPVATA YR+LP+I LLE VE
Sbjct: 189 TIRPVHD--DILIAQLRPGQEIDLLMHCVKGIGKDHAKFSPVATASYRLLPDITLLEPVE 246
Query: 286 DEDAEKLVKTCPVNVFDIEDIGSGKKRATVAQPRACTLCRECLRCGEEWEKRVSIRRVKD 345
E AE+L V +++++ GKK A VA PR T RE R E+ +K V + RV+D
Sbjct: 247 GEAAEELSYCFSPGVIEVQEV-QGKKVARVANPRLDTFSREVFR-HEKLKKAVRLARVRD 304
Query: 346 HFI 348
H+I
Sbjct: 305 HYI 307
>gi|296198261|ref|XP_002746623.1| PREDICTED: DNA-directed RNA polymerases I and III subunit RPAC1
[Callithrix jacchus]
Length = 346
Score = 250 bits (639), Expect = 6e-64, Method: Compositional matrix adjust.
Identities = 141/303 (46%), Positives = 196/303 (64%), Gaps = 20/303 (6%)
Query: 47 IHTENVMYSGAYASMGVDNSLQLDHFCNNFRVEVIRLTKDDMEFDLIGIDAAIANAFRRI 106
+HT + + G Y+ G D++ + F NFRV+V+ + ++ +EFD++GIDA+IANAFRRI
Sbjct: 24 VHTTD--FPGNYS--GYDDAWDQERFEKNFRVDVVHMDENSLEFDMVGIDASIANAFRRI 79
Query: 107 LIAELPTMAIEKVLIANNTSVIQDEVLAHRLGLIPIIVDPRLFEYMSEND-TSNEKNTIV 165
L+AE+PTMA+EKVL+ NNTS++QDE+LAHRLGLIPI DPRLFEY ++ D E +T+
Sbjct: 80 LLAEVPTMAVEKVLVYNNTSIVQDEILAHRLGLIPIHADPRLFEYRNQGDEEGTEIDTLQ 139
Query: 166 FKLHVLCERGGPRLTVKTNELKWLPNGSELPLETKPDSNPSSKPRTYTSFSSSQDLLPEF 225
F+L V C R P +++ P E + ++ T+ + DL PE
Sbjct: 140 FRLQVRCTR-NPHAAKDSSD----------PNELYMNHKVYTRHMTWIPLGNQADLFPEG 188
Query: 226 SNNPIRPMLDITIARLGPGQEIELEAHAVKGIGKTHAKWSPVATAWYRMLPEIVLLEDVE 285
+ P+ DI IA+L PGQEI+L H VKGIGK HAK+SPVATA YR+LP+I LLE VE
Sbjct: 189 TIRPVHD--DILIAQLRPGQEIDLLMHCVKGIGKDHAKFSPVATASYRLLPDITLLEPVE 246
Query: 286 DEDAEKLVKTCPVNVFDIEDIGSGKKRATVAQPRACTLCRECLRCGEEWEKRVSIRRVKD 345
E AE+L + V +++++ GKK A VA PR T RE R E+ +K V + RV+D
Sbjct: 247 GEAAEELSRCFSPGVVEVQEV-QGKKVARVANPRLDTFSREIFR-NEKLKKAVRLARVRD 304
Query: 346 HFI 348
H+I
Sbjct: 305 HYI 307
>gi|575586|dbj|BAA06735.1| mouse RNA polymerase I 40kD subunit [Mus musculus]
Length = 355
Score = 250 bits (638), Expect = 9e-64, Method: Compositional matrix adjust.
Identities = 146/321 (45%), Positives = 196/321 (61%), Gaps = 24/321 (7%)
Query: 32 IEFQRTRVQCNLDAPIHTENVMYSGAYASMGVDNSLQLDHFCNNFRVEVIRLTKDDMEFD 91
+E RTRV + + G YA G D++ + F NFRV V+++ +D +EFD
Sbjct: 16 VEEMRTRVVLGEFGVRNVHTTDFPGNYA--GYDDAWDQNRFEKNFRVGVVQMDEDTLEFD 73
Query: 92 LIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRLGLIPIIVDPRLFEY 151
++GIDAAIANAFRRIL+A +PTMA+EKVL+ NNTS++QDE+LAHRLGLIPI+ DPRLFEY
Sbjct: 74 MVGIDAAIANAFRRILLARVPTMAVEKVLVYNNTSIVQDEILAHRLGLIPILADPRLFEY 133
Query: 152 MSEN-DTSNEKNTIVFKLHVLCERGGPRLTVKTNELKWLPNG---SELPLETKPDSNPSS 207
++ + E +T+ F+L V C R PN S P E + +
Sbjct: 134 RNQGEEEGTEIDTLQFRLQVRCTRN--------------PNAAKDSSDPNELYVNHKVYT 179
Query: 208 KPRTYTSFSSSQDLLPEFSNNPIRPMLDITIARLGPGQEIELEAHAVKGIGKTHAKWSPV 267
+ T+ + D+ PE + P+ DI IA+L PGQEI+L H VKGIGK HAK+SPV
Sbjct: 180 RHMTWVPLGNQADVFPEGTIRPVHD--DILIAQLRPGQEIDLMMHCVKGIGKDHAKFSPV 237
Query: 268 ATAWYRMLPEIVLLEDVEDEDAEKLVKTCPVNVFDIEDIGSGKKRATVAQPRACTLCREC 327
ATA YR+LP I LLE VE E AE+L + V ++E++ GKK A VA R T RE
Sbjct: 238 ATASYRLLPAITLLEPVEGEAAEELSQCFSPGVIEVEEV-QGKKVARVANARLDTFSREI 296
Query: 328 LRCGEEWEKRVSIRRVKDHFI 348
R E+ +K V + RV+DH+I
Sbjct: 297 FR-HEKLKKAVRLARVRDHYI 316
>gi|308806201|ref|XP_003080412.1| RNA polymerase subunit (ISS) [Ostreococcus tauri]
gi|116058872|emb|CAL54579.1| RNA polymerase subunit (ISS) [Ostreococcus tauri]
Length = 382
Score = 248 bits (634), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 143/342 (41%), Positives = 196/342 (57%), Gaps = 34/342 (9%)
Query: 27 KLPPHIEFQRTRVQCNLDAPIHTENVMYSGAYASMGVDNSLQLDHFCNNFRVEVIRLTKD 86
K+ IE Q+ + D + + + Y GAYASM + + +D F F + + +++
Sbjct: 22 KMLAKIEEQKKYLIAGADRNANAKEIAYGGAYASMEGEGAFSVDAFRETFALTITDASEE 81
Query: 87 DMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRLGLIPIIVDP 146
+ F++ G AA ANAFRRI+I+E+PTMAIEKV + NNTSV+ DEV AHRLGL+PI DP
Sbjct: 82 RVVFEMEGCSAAFANAFRRIIISEVPTMAIEKVYMINNTSVVPDEVFAHRLGLVPIKADP 141
Query: 147 RLFEYMSENDTSNEKNTIVFKLHVLCERGGPRL-----------TVKTNELKWLPNGSEL 195
FEY ND +NE NTIV LH C R RL +V +N L+W P+GS+L
Sbjct: 142 ARFEYRGPNDLANETNTIVLSLHARCHR--ERLDDGSLGEVVNRSVYSNALQWCPDGSQL 199
Query: 196 PLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPML-DITIARLGPGQEIELEAHAV 254
P E + Y+ F SQ F + + DI + +L PGQEIELE H V
Sbjct: 200 PEEERA---------KYSDFKRSQ--RESFGEEELGCVHDDILLVKLAPGQEIELECHCV 248
Query: 255 KGIGKTHAKWSPVATAWYRMLPEIVLLEDVEDEDAEKLVKTCPVNVFDIEDI----GSG- 309
KGIG+ H+KWSPV T WYRM+PEI +LE + DA+ ++ C N D G G
Sbjct: 249 KGIGQEHSKWSPVGTCWYRMVPEITILEPITGADADVFMERC-ANFNDTHACYACEGKGD 307
Query: 310 KKRATVAQPRACTLCRECLR--CGE-EWEKRVSIRRVKDHFI 348
KK V + R C LC E +R GE W++++++R+ K+HFI
Sbjct: 308 KKTVKVVETRGCDLCVERVRELTGEPGWDEKIAVRKHKNHFI 349
>gi|327262314|ref|XP_003215970.1| PREDICTED: DNA-directed RNA polymerases I and III subunit
RPAC1-like [Anolis carolinensis]
Length = 344
Score = 248 bits (634), Expect = 3e-63, Method: Compositional matrix adjust.
Identities = 148/321 (46%), Positives = 192/321 (59%), Gaps = 20/321 (6%)
Query: 29 PPHIEFQRTRVQCNLDAPIHTENVMYSGAYASMGVDNSLQLDHFCNNFRVEVIRLTKDDM 88
P +E R+RV + + G Y+ G D++ F NFRV+VI + + +
Sbjct: 4 PGSVEEMRSRVVLGEFGVRNVHTTDFPGNYS--GYDDAWDRTKFEKNFRVDVISMDESTL 61
Query: 89 EFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRLGLIPIIVDPRL 148
EFD++GIDAAIANAFRRIL+AE+PTMA+EKV + NNTS++QDE+LAHRLGLIPI DPRL
Sbjct: 62 EFDMVGIDAAIANAFRRILLAEVPTMAVEKVFVYNNTSIVQDEILAHRLGLIPICADPRL 121
Query: 149 FEYMSENDTSNEKNTIVFKLHVLCERGGPRLTVKTNELKWLPNGSELPLETKPDSNPSSK 208
FEY SE D +E NT+ F+L + C R P S P E + SK
Sbjct: 122 FEYKSEEDECDEINTLQFQLKIKCSRNPE-----------APKESSDPNELYINHKVYSK 170
Query: 209 PRTYTSFSSSQDLLPEFSNNPIRPML-DITIARLGPGQEIELEAHAVKGIGKTHAKWSPV 267
+ S D + N RP+ DI IA+L PGQEI++ H VKGIGK HAK+SPV
Sbjct: 171 HMEWVPLGSQADNM----NAGFRPVHDDILIAQLRPGQEIDVLMHCVKGIGKDHAKFSPV 226
Query: 268 ATAWYRMLPEIVLLEDVEDEDAEKLVKTCPVNVFDIEDIGSGKKRATVAQPRACTLCREC 327
ATA YR+LP+I LL+ VE E AEKL K V ++E+I GKK A VA R T RE
Sbjct: 227 ATASYRLLPDITLLKPVEGETAEKLKKCFSSGVIEVEEI-KGKKVARVANARLDTFSREI 285
Query: 328 LRCGEEWEKRVSIRRVKDHFI 348
R ++ + V + RV+DH+I
Sbjct: 286 FR-HDDLKNLVRLARVRDHYI 305
>gi|395832416|ref|XP_003789267.1| PREDICTED: DNA-directed RNA polymerases I and III subunit RPAC1
[Otolemur garnettii]
Length = 346
Score = 248 bits (634), Expect = 3e-63, Method: Compositional matrix adjust.
Identities = 141/303 (46%), Positives = 194/303 (64%), Gaps = 20/303 (6%)
Query: 47 IHTENVMYSGAYASMGVDNSLQLDHFCNNFRVEVIRLTKDDMEFDLIGIDAAIANAFRRI 106
+HT + + G Y+ G D++ D F NFRV+V+ + ++ +EFD++GIDAAIANAFRRI
Sbjct: 24 VHTTD--FPGNYS--GYDDAWDQDRFEKNFRVDVVHMDENTLEFDMVGIDAAIANAFRRI 79
Query: 107 LIAELPTMAIEKVLIANNTSVIQDEVLAHRLGLIPIIVDPRLFEYMSEND-TSNEKNTIV 165
L+AE+PTMA+EKVL+ NNTS++QDE+LAHRLGLIPI DPRLFEY ++ D E +T+
Sbjct: 80 LLAEVPTMAVEKVLVYNNTSIVQDEILAHRLGLIPIHADPRLFEYRNQGDEEGTEIDTLQ 139
Query: 166 FKLHVLCERGGPRLTVKTNELKWLPNGSELPLETKPDSNPSSKPRTYTSFSSSQDLLPEF 225
F+L V C R P +++ P E + ++ + + DL PE
Sbjct: 140 FRLQVRCTR-NPHAAKDSSD----------PNELYVNHKVYTRHMMWVPLGNQADLFPEG 188
Query: 226 SNNPIRPMLDITIARLGPGQEIELEAHAVKGIGKTHAKWSPVATAWYRMLPEIVLLEDVE 285
+ P+ DI IA+L PGQEI+L H VKGIGK HAK+SPVATA YR+LP+I LL+ VE
Sbjct: 189 TIRPVHD--DILIAQLRPGQEIDLLMHCVKGIGKDHAKFSPVATASYRLLPDITLLKPVE 246
Query: 286 DEDAEKLVKTCPVNVFDIEDIGSGKKRATVAQPRACTLCRECLRCGEEWEKRVSIRRVKD 345
E AE+L + V ++++I GKK A V PR T RE R E+ +K V + RV+D
Sbjct: 247 GEAAEELSQCFSPGVIEVQEI-QGKKVARVVNPRLDTFSREIFR-HEKLKKIVQLARVRD 304
Query: 346 HFI 348
H+I
Sbjct: 305 HYI 307
>gi|66812176|ref|XP_640267.1| RNA polymerase III subunit [Dictyostelium discoideum AX4]
gi|74855077|sp|Q54SN4.1|RPAC1_DICDI RecName: Full=DNA-directed RNA polymerases I and III subunit rpac1;
Short=RNA polymerases I and III subunit AC1
gi|60468282|gb|EAL66291.1| RNA polymerase III subunit [Dictyostelium discoideum AX4]
Length = 345
Score = 248 bits (633), Expect = 3e-63, Method: Compositional matrix adjust.
Identities = 134/325 (41%), Positives = 193/325 (59%), Gaps = 36/325 (11%)
Query: 30 PHIEFQRTRVQCNLDAPIHTENVMYSGAYASMGVDNSLQLDHFCNNFRVEVIRLTKDDME 89
P++E +RT+V + YSGAY S+G DNS L+ F NF++ ++ + +++
Sbjct: 13 PNLENKRTKVTLTNSGVENARGTYYSGAYTSVGYDNSFNLNRFKENFKINILSESANELV 72
Query: 90 FDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRLGLIPIIVDPRLF 149
F++IGIDA IANA RRI+I+E+PTMAIEKV I NNTS++QDEVLAHRLG+IPI VDPR F
Sbjct: 73 FEMIGIDAPIANALRRIMISEIPTMAIEKVYIINNTSILQDEVLAHRLGMIPIKVDPRKF 132
Query: 150 EYMSENDTSNEKNTIVFKLHVLCERGGP-----RLTVKTNELKWLPNGSELPLETKPDSN 204
+ N ++T++F+L V CE+ T + L W+P +
Sbjct: 133 NFKLPNKEYTAEDTLIFQLKVKCEKDSVTGKIINETALSKHLIWVPTQDQ---------- 182
Query: 205 PSSKPRTYTSFSSSQDLLPEFSNNPIRPML-DITIARLGPGQEIELEAHAVKGIGKTHAK 263
+++ P + P RPM DI I +L PGQ I+++ + K IG+ H K
Sbjct: 183 --------------EEMFPNEEDRP-RPMEDDIPIMKLRPGQVIDIQCYCEKNIGREHIK 227
Query: 264 WSPVATAWYRMLPEIVLLEDVEDEDAEKLVKTCPVNVFDIEDIGSGKKRATVAQPRACTL 323
WSPV TA YR+ P I + + ++ + A +L++ CP VFDIED G + A+P CT+
Sbjct: 228 WSPVCTASYRLQPVISVDKSIKGDKANQLLEKCPKKVFDIEDSG----QVVAARPLDCTM 283
Query: 324 CRECLRCGEEWEKRVSIRRVKDHFI 348
CREC+R E+E+ V I RV+DHFI
Sbjct: 284 CRECIR-DPEFEQNVKIERVRDHFI 307
>gi|351707955|gb|EHB10874.1| DNA-directed RNA polymerases I and III subunit RPAC1
[Heterocephalus glaber]
Length = 346
Score = 248 bits (633), Expect = 3e-63, Method: Compositional matrix adjust.
Identities = 144/304 (47%), Positives = 196/304 (64%), Gaps = 22/304 (7%)
Query: 47 IHTENVMYSGAYASMGVDNSLQLDHFCNNFRVEVIRLTKDDMEFDLIGIDAAIANAFRRI 106
+HT + + G Y+ G D++ D F NFRV+V+ + ++ +EFD++GIDAAIANAFRRI
Sbjct: 24 VHTTD--FPGNYS--GYDDAWDQDRFEKNFRVDVVHMDENSLEFDMVGIDAAIANAFRRI 79
Query: 107 LIAELPTMAIEKVLIANNTSVIQDEVLAHRLGLIPIIVDPRLFEYMSEND-TSNEKNTIV 165
L+AE+PTMA+EKVL+ NNTS++QDE+LAHRLGLIPI DPRLFE+ +E D E +T+
Sbjct: 80 LLAEVPTMAVEKVLVYNNTSIVQDEILAHRLGLIPIHADPRLFEFRNEGDEEGTEIDTLQ 139
Query: 166 FKLHVLCERGGPRLTVKTNELKWLPNGSELPLETKPDSNPSSKPRTYTSFSSSQDLLPEF 225
F+L V C R P +++ P E + ++ T+ + D+ PE
Sbjct: 140 FRLQVRCTR-NPHAAKDSSD----------PNELYVNHKVYTRHMTWVPLGNQADVFPE- 187
Query: 226 SNNPIRPML-DITIARLGPGQEIELEAHAVKGIGKTHAKWSPVATAWYRMLPEIVLLEDV 284
IRP+ DI IA+L PGQEI+L H VKGIGK HAK+SPVATA YR+LP+I LLE V
Sbjct: 188 --GMIRPVHNDILIAQLRPGQEIDLLMHCVKGIGKDHAKFSPVATASYRLLPDITLLEPV 245
Query: 285 EDEDAEKLVKTCPVNVFDIEDIGSGKKRATVAQPRACTLCRECLRCGEEWEKRVSIRRVK 344
E E AE+L V +++++ GKK A VA PR T RE R E+ +K V + RV+
Sbjct: 246 EGEVAEELSCCFSPGVIEVQEV-QGKKVARVANPRLDTFSREIFR-HEKLKKAVQLTRVR 303
Query: 345 DHFI 348
DH+I
Sbjct: 304 DHYI 307
>gi|339521959|gb|AEJ84144.1| Polr1c protein [Capra hircus]
Length = 346
Score = 247 bits (631), Expect = 5e-63, Method: Compositional matrix adjust.
Identities = 143/318 (44%), Positives = 195/318 (61%), Gaps = 18/318 (5%)
Query: 32 IEFQRTRVQCNLDAPIHTENVMYSGAYASMGVDNSLQLDHFCNNFRVEVIRLTKDDMEFD 91
+E RTRV + + G Y G D++ D F NFRV+V+ + ++ +EFD
Sbjct: 7 VEEMRTRVVLGEFGVRNVHTTDFPGNYC--GYDDAWDQDRFEKNFRVDVVHMDENSLEFD 64
Query: 92 LIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRLGLIPIIVDPRLFEY 151
++GID+AIANAFRRIL+AE+P MA+EKVL+ NNTS++QDE+LAHRLGLIPI DPRLFEY
Sbjct: 65 MVGIDSAIANAFRRILLAEVPAMAVEKVLVYNNTSIVQDEILAHRLGLIPIHADPRLFEY 124
Query: 152 MSENDTSN-EKNTIVFKLHVLCERGGPRLTVKTNELKWLPNGSELPLETKPDSNPSSKPR 210
++ D E +T+ F+L V C R P +++ P E + ++
Sbjct: 125 RNQGDEGGTEIDTLQFRLQVRCTR-NPHAAKDSSD----------PNELYVNHRVYTRHM 173
Query: 211 TYTSFSSSQDLLPEFSNNPIRPMLDITIARLGPGQEIELEAHAVKGIGKTHAKWSPVATA 270
T+ S L PE + P+ DI IA+L PGQEI+L H VKGIGK HAK+SPVATA
Sbjct: 174 TWVPLGSQAALFPEGAIRPVHD--DILIAQLRPGQEIDLLMHCVKGIGKDHAKFSPVATA 231
Query: 271 WYRMLPEIVLLEDVEDEDAEKLVKTCPVNVFDIEDIGSGKKRATVAQPRACTLCRECLRC 330
YR+LP+I LLE VE E+L + V ++++I GKK A+VA PR T RE R
Sbjct: 232 SYRLLPDITLLEPVEGGAGEELSRCFSPGVIEVQEI-QGKKVASVANPRLDTFSREVFR- 289
Query: 331 GEEWEKRVSIRRVKDHFI 348
E+ +K V + RV+DH+I
Sbjct: 290 NEKLKKVVRLARVRDHYI 307
>gi|56605738|ref|NP_001008331.1| DNA-directed RNA polymerases I and III subunit RPAC1 [Rattus
norvegicus]
gi|55778316|gb|AAH86597.1| Polymerase (RNA) I polypeptide C [Rattus norvegicus]
gi|149069363|gb|EDM18804.1| RNA polymerase 1-1, isoform CRA_a [Rattus norvegicus]
Length = 346
Score = 247 bits (630), Expect = 8e-63, Method: Compositional matrix adjust.
Identities = 143/318 (44%), Positives = 196/318 (61%), Gaps = 18/318 (5%)
Query: 32 IEFQRTRVQCNLDAPIHTENVMYSGAYASMGVDNSLQLDHFCNNFRVEVIRLTKDDMEFD 91
+E RTRV + + G Y+ G D++ D F NFRV+V+ + + +EFD
Sbjct: 7 VEEMRTRVVLGEFGVRNVHTTDFPGNYS--GYDDAWDQDRFEKNFRVDVVHMDESTLEFD 64
Query: 92 LIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRLGLIPIIVDPRLFEY 151
++GIDAAIANAFRRIL+AE+PTMA+EKVL+ NNTS++QDE+LAHRLGLIPI+ DPRLFEY
Sbjct: 65 MVGIDAAIANAFRRILLAEVPTMAVEKVLVYNNTSIVQDEILAHRLGLIPILADPRLFEY 124
Query: 152 MSEN-DTSNEKNTIVFKLHVLCERGGPRLTVKTNELKWLPNGSELPLETKPDSNPSSKPR 210
+ + E +T+ F+L V C R P +++ P E + ++
Sbjct: 125 RNPGEEEGTEIDTLQFRLQVRCTR-NPSAAKDSSD----------PNELYVNHKVYTRHM 173
Query: 211 TYTSFSSSQDLLPEFSNNPIRPMLDITIARLGPGQEIELEAHAVKGIGKTHAKWSPVATA 270
T+ + D+ PE + P+ DI IA+L PGQEI+L H VKGIGK HAK+SPVATA
Sbjct: 174 TWVPLGNQADVFPEGTVRPVHD--DILIAQLRPGQEIDLMMHCVKGIGKDHAKFSPVATA 231
Query: 271 WYRMLPEIVLLEDVEDEDAEKLVKTCPVNVFDIEDIGSGKKRATVAQPRACTLCRECLRC 330
YR+LP+I LLE VE E AE+L + V ++++ GKK A VA R T RE R
Sbjct: 232 SYRLLPDITLLEPVEGEAAEELSQCFSPGVIAVQEV-QGKKVARVANARLDTFSREIFR- 289
Query: 331 GEEWEKRVSIRRVKDHFI 348
E+ +K V + RV+DH+I
Sbjct: 290 HEKLKKAVRLARVRDHYI 307
>gi|145349074|ref|XP_001418965.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144579195|gb|ABO97258.1| predicted protein [Ostreococcus lucimarinus CCE9901]
Length = 360
Score = 246 bits (629), Expect = 8e-63, Method: Compositional matrix adjust.
Identities = 139/335 (41%), Positives = 189/335 (56%), Gaps = 30/335 (8%)
Query: 32 IEFQRTRVQCNLDAPIHTENVMYSGAYASMGVDNSLQLDHFCNNFRVEVIRLTKDDMEFD 91
+E QR V+ + + V Y GAYAS+G D + + F F + + ++ F+
Sbjct: 5 LEEQRHYVRAGAEHNANVNEVAYGGAYASVGKDFAFSAERFRETFALTLTTSDEERCVFE 64
Query: 92 LIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRLGLIPIIVDPRLFEY 151
L G A ANAFRRI+++E+PTMAIEKV + NNTSV+ DEV AHRLGL+PI DP +FEY
Sbjct: 65 LEGCSPAFANAFRRIILSEVPTMAIEKVFVVNNTSVVADEVFAHRLGLVPIKADPAMFEY 124
Query: 152 MSENDTSNEKNTIVFKLHVLCER-GGPRLT--------VKTNELKWLPNGSELPLETKPD 202
E D +NE NTIV K+HV C + P T V +N L W P GS+LP E
Sbjct: 125 RGEGDAANETNTIVLKMHVRCHKERNPDGTLGEVVNRSVYSNALTWCPEGSQLPEENGAK 184
Query: 203 SNPSSKPRTYTSFSSSQ-DLLPEFSNNPIRPMLDITIARLGPGQEIELEAHAVKGIGKTH 261
Y+ F SQ +++ + + DI + +L PGQE+ELE H VKGIG+ H
Sbjct: 185 ---------YSDFKRSQKEVVGDQELGCVHD--DILLVKLAPGQEVELECHCVKGIGQEH 233
Query: 262 AKWSPVATAWYRMLPEIVLLEDVEDEDAEKLVKTCP-----VNVFDIEDIGSGKKRATVA 316
AKWSPV T WY+M+PEI +LE + DA++ +K C + E G KK V
Sbjct: 234 AKWSPVGTCWYKMVPEITILEPITGADADEFMKKCANFSETHKCYACEGKGD-KKTVKVV 292
Query: 317 QPRACTLCRECLR--CGE-EWEKRVSIRRVKDHFI 348
+ R C C E +R GE W ++++R+ KDHFI
Sbjct: 293 ESRGCDFCVERVRELTGEPGWADKIAVRKRKDHFI 327
>gi|126310054|ref|XP_001362696.1| PREDICTED: DNA-directed RNA polymerases I and III subunit RPAC1
[Monodelphis domestica]
Length = 346
Score = 246 bits (629), Expect = 9e-63, Method: Compositional matrix adjust.
Identities = 144/303 (47%), Positives = 195/303 (64%), Gaps = 20/303 (6%)
Query: 47 IHTENVMYSGAYASMGVDNSLQLDHFCNNFRVEVIRLTKDDMEFDLIGIDAAIANAFRRI 106
+HT + + G Y G D++ F FRV+V+ + ++ +EFD+IGIDAAIANAFRRI
Sbjct: 24 VHTTD--FPGNYC--GYDDAWDQSRFEREFRVDVVHMDENSLEFDMIGIDAAIANAFRRI 79
Query: 107 LIAELPTMAIEKVLIANNTSVIQDEVLAHRLGLIPIIVDPRLFEYMSEND-TSNEKNTIV 165
L+AE+PTMA+EKV + NNTS++QDE+LAHRLGLIPI DPRLFEY ++ D E +T+
Sbjct: 80 LLAEVPTMAVEKVFVYNNTSIVQDEILAHRLGLIPIRADPRLFEYRNQGDEDGTEIDTLQ 139
Query: 166 FKLHVLCERGGPRLTVKTNELKWLPNGSELPLETKPDSNPSSKPRTYTSFSSSQDLLPEF 225
F+L V C R P+ +++ PN EL L K +K T+ + D+ PE
Sbjct: 140 FQLKVKCTR-NPQAAKDSSD----PN--ELYLNHK----VYTKHMTWIPLGNQADVFPEG 188
Query: 226 SNNPIRPMLDITIARLGPGQEIELEAHAVKGIGKTHAKWSPVATAWYRMLPEIVLLEDVE 285
+ P+ DI IA+L PGQE++L H VKGIGK HAK+SPVATA YR+LP+I LL+ +E
Sbjct: 189 TIRPVHD--DILIAQLRPGQELDLLMHCVKGIGKDHAKFSPVATASYRLLPDITLLQPIE 246
Query: 286 DEDAEKLVKTCPVNVFDIEDIGSGKKRATVAQPRACTLCRECLRCGEEWEKRVSIRRVKD 345
E AE+L + V ++D+ GKK ATVA PR T RE R E +K V + RV+D
Sbjct: 247 GEAAEELSQCFSPGVIQVQDV-KGKKVATVANPRLDTFSREIFR-HENLKKLVRLARVRD 304
Query: 346 HFI 348
H+I
Sbjct: 305 HYI 307
>gi|297290919|ref|XP_001096103.2| PREDICTED: DNA-directed RNA polymerases I and III subunit RPAC1,
partial [Macaca mulatta]
Length = 298
Score = 246 bits (628), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 134/274 (48%), Positives = 183/274 (66%), Gaps = 15/274 (5%)
Query: 75 NFRVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLA 134
NFRV+V+ + ++ +EFD++GIDAAIANAFRRIL+AE+PTMA+EKVL+ NNTS++QDE+LA
Sbjct: 1 NFRVDVVHMDENSLEFDMVGIDAAIANAFRRILLAEVPTMAVEKVLVYNNTSIVQDEILA 60
Query: 135 HRLGLIPIIVDPRLFEYMSENDTSNEKNTIVFKLHVLCERGGPRLTVKTNELKWLPNGSE 194
HRLGLIPI DPRLFEY ++++ E +T+ F+L V C R P +++
Sbjct: 61 HRLGLIPIHADPRLFEYRNQDEDGTEIDTLRFRLQVRCTR-NPHAAKDSSD--------- 110
Query: 195 LPLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPMLDITIARLGPGQEIELEAHAV 254
P E + ++ T+ + DL PE + P+ DI IA+L PGQEI+L H V
Sbjct: 111 -PNELYVNHKVYTRHMTWIPLGNQADLFPEGTIRPVHD--DILIAQLRPGQEIDLLMHCV 167
Query: 255 KGIGKTHAKWSPVATAWYRMLPEIVLLEDVEDEDAEKLVKTCPVNVFDIEDIGSGKKRAT 314
KGIGK HAK+SPVATA YR+LP+I LLE VE E AE+L + V +++++ GKK A
Sbjct: 168 KGIGKDHAKFSPVATASYRLLPDITLLEPVEGEAAEELSRCFSPGVIEVQEV-QGKKVAR 226
Query: 315 VAQPRACTLCRECLRCGEEWEKRVSIRRVKDHFI 348
VA PR T RE R E+ +K V + RV+DH+I
Sbjct: 227 VANPRLDTFSREIFR-HEKLKKVVRLARVRDHYI 259
>gi|350586678|ref|XP_003482243.1| PREDICTED: DNA-directed RNA polymerases I and III subunit RPAC1
[Sus scrofa]
Length = 346
Score = 246 bits (627), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 141/303 (46%), Positives = 193/303 (63%), Gaps = 20/303 (6%)
Query: 47 IHTENVMYSGAYASMGVDNSLQLDHFCNNFRVEVIRLTKDDMEFDLIGIDAAIANAFRRI 106
+HT + + G Y+ G D++ D F NFRV+V+ + ++ +EFD++GIDAAIANAFRRI
Sbjct: 24 VHTTD--FPGNYS--GYDDAWDQDRFEKNFRVDVVHMDENSLEFDMVGIDAAIANAFRRI 79
Query: 107 LIAELPTMAIEKVLIANNTSVIQDEVLAHRLGLIPIIVDPRLFEYMSEND-TSNEKNTIV 165
L+AE+PTMA+EKVL+ NNTS++QDE+LAHRLGLIPI DPRLFEY + D E +T+
Sbjct: 80 LLAEVPTMAVEKVLVYNNTSIVQDEILAHRLGLIPIHADPRLFEYRNLGDEEGTEIDTLQ 139
Query: 166 FKLHVLCERGGPRLTVKTNELKWLPNGSELPLETKPDSNPSSKPRTYTSFSSSQDLLPEF 225
F+L V C R P +++ P E + ++ T+ + DL PE
Sbjct: 140 FRLQVRCTR-NPSAAKDSSD----------PNELYVNHKVYTRHMTWVPLGNQADLFPEG 188
Query: 226 SNNPIRPMLDITIARLGPGQEIELEAHAVKGIGKTHAKWSPVATAWYRMLPEIVLLEDVE 285
+ P+ DI IA+L PGQEI+L VKGIGK HAK+SPVATA YR+LP+I LLE VE
Sbjct: 189 TIRPVHD--DILIAQLRPGQEIDLLMQCVKGIGKDHAKFSPVATASYRLLPDITLLEPVE 246
Query: 286 DEDAEKLVKTCPVNVFDIEDIGSGKKRATVAQPRACTLCRECLRCGEEWEKRVSIRRVKD 345
+ AE+L + V ++++I GKK A VA PR T RE R + +K V + RV+D
Sbjct: 247 GDAAEELSRCFSPGVIEVQEI-QGKKVARVANPRLDTFSREVFR-NDMLKKVVRLARVRD 304
Query: 346 HFI 348
H+I
Sbjct: 305 HYI 307
>gi|452821148|gb|EME28182.1| DNA-directed RNA polymerase III subunit C5 [Galdieria sulphuraria]
Length = 300
Score = 245 bits (626), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 134/297 (45%), Positives = 187/297 (62%), Gaps = 28/297 (9%)
Query: 46 PIHTENVMYSGAYASMGVDNSLQLDHFCNNFRVEVIRLTKDDMEFDLIGIDAAIANAFRR 105
P +TE + S Y ++G+D+SL L+ F N ++ +++ +++++ +L+G+ A + NA RR
Sbjct: 16 PTNTEGMYASSVYRAIGIDHSLDLETFLNQLQLRLVKNSEEEIILELVGVAAPLINALRR 75
Query: 106 ILIAELPTMAIEKVLIANNTSVIQDEVLAHRLGLIPIIVDPRLFEYMSENDTSNEKNTIV 165
IL AE+PTMAIE VLI++NTSVI DE+LAHRLGLIPI DP F+ + + E NTIV
Sbjct: 76 ILFAEVPTMAIEYVLISDNTSVIHDEILAHRLGLIPIQADPDGFQDYRKGEEPRENNTIV 135
Query: 166 FKLHVLCERGGPRLTVKTNELKWLPNGSELPLETKPDSNPSSKPRTYTSFSSSQDLLPEF 225
KL V C++ P+ G+E P E +SN S+ + + L +F
Sbjct: 136 LKLQVECKQ-NPQAR----------PGAE-PEELYINSNVYSRDLVWEPLGNQ---LEKF 180
Query: 226 SNNPIRPML-DITIARLGPGQEIELEAHAVKGIGKTHAKWSPVATAWYRMLPEIVLLEDV 284
N IRP+ DI IA+L P Q IELEA +KGIGK HAKWSPVATA+Y MLP++ LL+D+
Sbjct: 181 GKNGIRPVSEDILIAKLRPKQRIELEARCIKGIGKEHAKWSPVATAYYAMLPQVELLQDI 240
Query: 285 EDEDAEKLVKTCPVNVFDIEDIGSGKKR------------ATVAQPRACTLCRECLR 329
DEDA +L++ CP+ VFD+ED+ K A V +PR CTLCREC+R
Sbjct: 241 LDEDARRLIQKCPMKVFDLEDMADKKHSYVEQQQPISHVIAKVVEPRRCTLCRECIR 297
>gi|149571084|ref|XP_001507416.1| PREDICTED: DNA-directed RNA polymerases I and III subunit RPAC1
[Ornithorhynchus anatinus]
Length = 346
Score = 244 bits (622), Expect = 6e-62, Method: Compositional matrix adjust.
Identities = 141/306 (46%), Positives = 188/306 (61%), Gaps = 26/306 (8%)
Query: 47 IHTENVMYSGAYASMGVDNSLQLDHFCNNFRVEVIRLTKDDMEFDLIGIDAAIANAFRRI 106
+HT + + G YA G D++ F FRV+V+++ +D +EFD++GIDAAIANAFRRI
Sbjct: 24 VHTTD--FPGNYA--GFDDAWDQSRFEQGFRVDVVQMEEDSLEFDMVGIDAAIANAFRRI 79
Query: 107 LIAELPTMAIEKVLIANNTSVIQDEVLAHRLGLIPIIVDPRLFEYMSEND-TSNEKNTIV 165
L+AE+PTMA+EKV + NNTS++QDEVLAHRLGLIPI DPRLFEY ++ D E +T+
Sbjct: 80 LLAEVPTMAVEKVFVYNNTSIMQDEVLAHRLGLIPITADPRLFEYRNQGDEEGTEIDTLQ 139
Query: 166 FKLHVLCERGGPRLTVKTNELKWLPNG---SELPLETKPDSNPSSKPRTYTSFSSSQDLL 222
F+L V C W P+ S P + + +K T+ + DL
Sbjct: 140 FQLKVKC--------------TWNPSAAKDSSDPNQLYLNHKVYTKHMTWVPLGNQADLF 185
Query: 223 PEFSNNPIRPMLDITIARLGPGQEIELEAHAVKGIGKTHAKWSPVATAWYRMLPEIVLLE 282
PE + P+ DI I +L PGQE++L H VKG+GK HAK+SPV T YR+LP+I LL+
Sbjct: 186 PEGAIRPVHD--DILITQLRPGQELDLLMHYVKGVGKDHAKFSPVDTVSYRLLPDITLLQ 243
Query: 283 DVEDEDAEKLVKTCPVNVFDIEDIGSGKKRATVAQPRACTLCRECLRCGEEWEKRVSIRR 342
VE E AEKL V I++I GKK A VA PR T RE R +E +K V + R
Sbjct: 244 PVEGEMAEKLKDCFSPGVIQIQEI-KGKKVAVVANPRLETFSREVFRH-DELKKLVRLAR 301
Query: 343 VKDHFI 348
V+DH+I
Sbjct: 302 VRDHYI 307
>gi|344264275|ref|XP_003404218.1| PREDICTED: DNA-directed RNA polymerases I and III subunit
RPAC1-like [Loxodonta africana]
Length = 306
Score = 243 bits (621), Expect = 8e-62, Method: Compositional matrix adjust.
Identities = 134/275 (48%), Positives = 183/275 (66%), Gaps = 16/275 (5%)
Query: 75 NFRVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLA 134
NFRV+V+ + ++ +EFD++GIDAAIANAFRRIL+AE+PTMA+EKVL+ NNTS++QDE+LA
Sbjct: 8 NFRVDVVHMDENSLEFDMVGIDAAIANAFRRILLAEVPTMAVEKVLVYNNTSIVQDEILA 67
Query: 135 HRLGLIPIIVDPRLFEYMSEND-TSNEKNTIVFKLHVLCERGGPRLTVKTNELKWLPNGS 193
HRLGLIPI DPRLFEY ++ D E +T+ F+L V C R P + +++
Sbjct: 68 HRLGLIPIHADPRLFEYRNQEDEEGTEIDTLQFRLQVRCTR-NPHASKDSSD-------- 118
Query: 194 ELPLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPMLDITIARLGPGQEIELEAHA 253
P E + ++ T+ + D+ PE + P+ DI IA+L PGQEI+L H
Sbjct: 119 --PSELYVNHKVYTRHMTWVPLGNQADVFPEGTIRPVHD--DILIAQLRPGQEIDLLMHC 174
Query: 254 VKGIGKTHAKWSPVATAWYRMLPEIVLLEDVEDEDAEKLVKTCPVNVFDIEDIGSGKKRA 313
VKGIGK HAK+SPVATA YR+LP+I LLE VE E AE+L + V +++++ GKK A
Sbjct: 175 VKGIGKDHAKFSPVATASYRLLPDITLLEPVEGEAAEELRQCFSPGVIEVQEV-QGKKVA 233
Query: 314 TVAQPRACTLCRECLRCGEEWEKRVSIRRVKDHFI 348
VA PR T RE R E+ +K V + RV+DH+I
Sbjct: 234 RVANPRLDTFSREVFR-NEKLKKVVRLARVRDHYI 267
>gi|291396258|ref|XP_002714740.1| PREDICTED: RNA polymerase I subunit [Oryctolagus cuniculus]
Length = 358
Score = 243 bits (619), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 141/315 (44%), Positives = 196/315 (62%), Gaps = 32/315 (10%)
Query: 47 IHTENVMYSGAYASMGVDNSLQLDHFCNNFRVEVIRLTKDDMEFDLIGIDAAIANAFRRI 106
+HT + + G Y+ G D++ D F NFRV+V+ + ++ +EFD++GIDAAIANAFRRI
Sbjct: 24 VHTTD--FPGNYS--GYDDAWDQDRFEKNFRVDVVHMDENSLEFDMVGIDAAIANAFRRI 79
Query: 107 LIAE------------LPTMAIEKVLIANNTSVIQDEVLAHRLGLIPIIVDPRLFEYMSE 154
L+AE +PTMA+EKVL+ NNTS++QDE+LAHRLGLIPI DPRLFEY ++
Sbjct: 80 LLAEVSAGPVTAGAWGMPTMAVEKVLVYNNTSIVQDEILAHRLGLIPIHADPRLFEYRNQ 139
Query: 155 -NDTSNEKNTIVFKLHVLCERGGPRLTVKTNELKWLPNGSELPLETKPDSNPSSKPRTYT 213
+D E +T+ F+L V C R P +++ P E + ++ T+
Sbjct: 140 GDDEGTEIDTLQFRLQVRCTRN-PHAAKDSSD----------PNELYVNHKVYTRHMTWV 188
Query: 214 SFSSSQDLLPEFSNNPIRPMLDITIARLGPGQEIELEAHAVKGIGKTHAKWSPVATAWYR 273
+ DL PE + P+ DI IA+L PGQEI+L H VKGIGK HAK+SPVATA YR
Sbjct: 189 PLGNQADLFPEGTIRPVHD--DILIAQLRPGQEIDLLMHCVKGIGKDHAKFSPVATASYR 246
Query: 274 MLPEIVLLEDVEDEDAEKLVKTCPVNVFDIEDIGSGKKRATVAQPRACTLCRECLRCGEE 333
+LP+I LL +E E AE+L + V +++++ GKK A VA PR T RE R E+
Sbjct: 247 LLPDITLLAPIEGEAAEELSQCFSPGVIEVQEV-QGKKVARVANPRLDTFSREIFR-NEK 304
Query: 334 WEKRVSIRRVKDHFI 348
+K V + RV+DH+I
Sbjct: 305 LKKLVRLARVRDHYI 319
>gi|237839019|ref|XP_002368807.1| DNA-directed RNA polymerases I and III subunit RPAC1, putative
[Toxoplasma gondii ME49]
gi|211966471|gb|EEB01667.1| DNA-directed RNA polymerases I and III subunit RPAC1, putative
[Toxoplasma gondii ME49]
gi|221502105|gb|EEE27849.1| DNA-directed RNA polymerase I, putative [Toxoplasma gondii VEG]
Length = 346
Score = 241 bits (614), Expect = 5e-61, Method: Compositional matrix adjust.
Identities = 139/324 (42%), Positives = 182/324 (56%), Gaps = 39/324 (12%)
Query: 32 IEFQRTRVQCNLDAPIHTENVMYSGAY-ASMGVDNSLQLDHFCNNFRVEVIRLTKDDMEF 90
I R+ C + P HT + Y+GA+ +S VD+ +D FC ++ + ++ + + F
Sbjct: 14 IPLHSNRLVCAAEGPRHTNSGGYAGAFLSSSYVDDVFSIDKFCERTSLKFLSVSPERVVF 73
Query: 91 DLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRLGLIPIIVDPRLFE 150
+L G+DAAI NA RRILI+E+PT+AIE V I NT V+QDEVLAHRLGLIP IVDP
Sbjct: 74 ELKGVDAAIPNALRRILISEVPTVAIETVQIWQNTGVVQDEVLAHRLGLIPFIVDPTALN 133
Query: 151 YMSENDTSNEKNTIVFKLHVLC--ERGGPR---LTVKTNELKWLPNGSELPLETKPDSNP 205
Y N ++N + LHV C + GP L V +KW P +P
Sbjct: 134 YRQPNQEVTDENALRVSLHVKCTEQSLGPHQTSLPVYAKHIKWEP------------MSP 181
Query: 206 SSKPRTYTSFSSSQDLLPEFSNNPIRPML-DITIARLGPGQEIELEAHAVKGIGKTHAKW 264
S K F+ NP R + DI I +L PGQEIEL+A+ KG+GKTHAKW
Sbjct: 182 SQK--------------EAFAANPPRAVHPDILITKLRPGQEIELKAYLEKGVGKTHAKW 227
Query: 265 SPVATAWYRMLPEIVLLEDVEDEDAEKLVKTCPVNVFDIEDIGSGKKRATVAQPRACTLC 324
SPV TA YR+ PEIV E ++ EDA L CP+ VFDIED A PR CT C
Sbjct: 228 SPVCTAVYRLEPEIVFKESIQGEDASDLCSLCPMGVFDIEDTTG---EAYARYPRNCTTC 284
Query: 325 RECLRCGEEWEKRVSIRRVKDHFI 348
R C+ E + K + +R++KDHFI
Sbjct: 285 RACI---ERFPKEIELRKIKDHFI 305
>gi|213513431|ref|NP_001134298.1| DNA-directed RNA polymerases I and III subunit RPAC1 [Salmo salar]
gi|209732188|gb|ACI66963.1| DNA-directed RNA polymerases I and III subunit RPAC1 [Salmo salar]
Length = 353
Score = 239 bits (611), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 140/303 (46%), Positives = 188/303 (62%), Gaps = 20/303 (6%)
Query: 47 IHTENVMYSGAYASMGVDNSLQLDHFCNNFRVEVIRLTKDDMEFDLIGIDAAIANAFRRI 106
+HT + Y G Y G D++ L F NFR++V+++ + +EFD++GIDAAIANAFRRI
Sbjct: 31 VHTTD--YPGNYP--GYDDTWNLQKFQKNFRIDVVQMDETSLEFDMVGIDAAIANAFRRI 86
Query: 107 LIAELPTMAIEKVLIANNTSVIQDEVLAHRLGLIPIIVDPRLFEYMSEND-TSNEKNTIV 165
L+AE+PTMA+EKVLI NNTS+IQDE+LAHRLGLIPI DPRLFEY + D E +TI
Sbjct: 87 LLAEVPTMAVEKVLIYNNTSIIQDEILAHRLGLIPIKADPRLFEYRNAGDEEGTEIDTIQ 146
Query: 166 FKLHVLCERGGPRLTVKTNELKWLPNGSELPLETKPDSNPSSKPRTYTSFSSSQDLLPEF 225
+L + C R PR T S P E + SK + + D+ +
Sbjct: 147 LQLKIKCTR-NPRAT----------KDSADPRELYLNHMVYSKDMKWAPIGNQADVFADA 195
Query: 226 SNNPIRPMLDITIARLGPGQEIELEAHAVKGIGKTHAKWSPVATAWYRMLPEIVLLEDVE 285
+ P+ DI +A+L PGQE+++ H VKGIG+ HAK+SPVATA YR+LPEI L+E VE
Sbjct: 196 NIGPVHG--DILLAQLRPGQELDIVMHCVKGIGQDHAKFSPVATASYRLLPEITLMETVE 253
Query: 286 DEDAEKLVKTCPVNVFDIEDIGSGKKRATVAQPRACTLCRECLRCGEEWEKRVSIRRVKD 345
E AE+L + V ++E+ G GK A V R T RE LR ++ + V + RV+D
Sbjct: 254 GEKAERLKRCFSPGVIEVENHG-GKVVAKVVNSRLDTCSREVLR-HDDLKNAVKLARVRD 311
Query: 346 HFI 348
HFI
Sbjct: 312 HFI 314
>gi|146164033|ref|XP_001012875.2| DNA-directed RNA polymerase I 40 kDa polypeptide [Tetrahymena
thermophila]
gi|146145882|gb|EAR92630.2| DNA-directed RNA polymerase I 40 kDa polypeptide [Tetrahymena
thermophila SB210]
Length = 336
Score = 239 bits (610), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 138/334 (41%), Positives = 192/334 (57%), Gaps = 34/334 (10%)
Query: 21 LPDVPQKLPPHIEFQRTRVQCNLDAPIHTENVMYSGAYASMGVDNSLQLDHFCNNFRVEV 80
+ + QK+ +I F +Q H++ + YS A+ S N+ F N ++EV
Sbjct: 1 MSNKTQKMKKNIVFTNEGIQ-------HSQEMNYSAAFTSEEDFNT-----FKENIKIEV 48
Query: 81 IRL--TKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRLG 138
IR ++EFDL+G+DA IANA RRI+IAE+PTMAI KV I NTS+I DEVLAHRLG
Sbjct: 49 IRYDNKNKELEFDLMGVDAPIANALRRIMIAEVPTMAIHKVYIYQNTSIIPDEVLAHRLG 108
Query: 139 LIPIIVDPRLFEYMSENDTSNEKNTIVFKLHVLCERGGPRLTVKTNELKWLPNGSELPLE 198
LIPI DPRLFE E D NEKN++ F L + C + + N SE LE
Sbjct: 109 LIPIYADPRLFEEKQEEDEYNEKNSLKFTLKIKCSKK-----------EQYKNYSEADLE 157
Query: 199 TKPDSNPSSKPRTYTS---FSSSQDLLPEFSNNPIRPMLD-ITIARLGPGQEIELEAHAV 254
Y+ + S + +F NPIR + D I +A+L QEI E
Sbjct: 158 NLTPETYLENAIVYSGDFKWVSQGEQNKKFEENPIRMVHDNIIVAKLRENQEIICEVICQ 217
Query: 255 KGIGKTHAKWSPVATAWYRMLPEIVLLEDVEDEDAEKLVKTCPVNVFDIEDIGSGKKRAT 314
KGIGKTHAKWSPV TA+YR++PEI + D+ A++L + CP+ V+D+++ +A
Sbjct: 218 KGIGKTHAKWSPVCTAYYRLMPEININSDITGAKAQELKERCPLKVYDVQN-----NKAI 272
Query: 315 VAQPRACTLCRECLRCGEEWEKRVSIRRVKDHFI 348
V+ RACT+CREC+R EE+ ++ + + K+HFI
Sbjct: 273 VSNERACTMCRECIREDEEFNSKIELAKKKEHFI 306
>gi|224047705|ref|XP_002195566.1| PREDICTED: DNA-directed RNA polymerases I and III subunit RPAC1
[Taeniopygia guttata]
Length = 346
Score = 238 bits (608), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 141/303 (46%), Positives = 191/303 (63%), Gaps = 20/303 (6%)
Query: 47 IHTENVMYSGAYASMGVDNSLQLDHFCNNFRVEVIRLTKDDMEFDLIGIDAAIANAFRRI 106
+HT + + G Y G +++ F FRV+VIR +D +EFD++GIDAAIANAFRRI
Sbjct: 24 VHTTD--FPGNYP--GYEDAWDQRRFEEAFRVDVIREEEDALEFDMVGIDAAIANAFRRI 79
Query: 107 LIAELPTMAIEKVLIANNTSVIQDEVLAHRLGLIPIIVDPRLFEYMSENDT-SNEKNTIV 165
L+AE+PTMA+EKV + NNTS++QDE+LAHRLGLIPI DPRLFEY ++ D E +T+
Sbjct: 80 LLAEVPTMAVEKVFVYNNTSIVQDEILAHRLGLIPIRADPRLFEYRNQGDQEGTEIDTLQ 139
Query: 166 FKLHVLCERGGPRLTVKTNELKWLPNGSELPLETKPDSNPSSKPRTYTSFSSSQDLLPEF 225
F+L + C+R P+ ++++ P E + SK T+ + DL P+
Sbjct: 140 FQLKIKCKR-NPQAAKESSD----------PDELYFNHKVYSKHMTWVPLGNQTDLFPDA 188
Query: 226 SNNPIRPMLDITIARLGPGQEIELEAHAVKGIGKTHAKWSPVATAWYRMLPEIVLLEDVE 285
P+ DI IA L PGQEI++ H VKGIGK HAK+SPVATA YR+LP+I LL+ VE
Sbjct: 189 DFRPVHD--DILIALLRPGQEIDVLMHCVKGIGKDHAKFSPVATASYRLLPDITLLQPVE 246
Query: 286 DEDAEKLVKTCPVNVFDIEDIGSGKKRATVAQPRACTLCRECLRCGEEWEKRVSIRRVKD 345
DE AE L K V +I++I +GKK A VA R T RE R E + V + RV++
Sbjct: 247 DEAAETLQKCFSPGVIEIQNI-NGKKVARVANARLDTFSREVFR-HEGLKNLVRLARVRN 304
Query: 346 HFI 348
H+I
Sbjct: 305 HYI 307
>gi|241730129|ref|XP_002412264.1| transferase, putative [Ixodes scapularis]
gi|215505503|gb|EEC14997.1| transferase, putative [Ixodes scapularis]
gi|442748497|gb|JAA66408.1| Putative rna polymerase i and iii subunit [Ixodes ricinus]
Length = 344
Score = 238 bits (606), Expect = 4e-60, Method: Compositional matrix adjust.
Identities = 133/319 (41%), Positives = 191/319 (59%), Gaps = 18/319 (5%)
Query: 31 HIEFQRTRVQCNLDAPIHTENVMYSGAYASMGVDNSLQLDHFCNNFRVEVIRLTKDDMEF 90
H+ RT V ++TE Y G +A G+D+S L F NF++ ++ L MEF
Sbjct: 3 HLHKMRTHVHMREHDLLNTETSDYPGTFA--GIDDSWDLKKFERNFQIGIVSLDDMTMEF 60
Query: 91 DLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRLGLIPIIVDPRLFE 150
D+IG++ AIANA RRIL+AE+PTMA +KV + NNTS++QDEVLAHR+GL+P +DPR+F+
Sbjct: 61 DMIGVNPAIANAIRRILLAEVPTMAPDKVFMYNNTSIVQDEVLAHRIGLVPFNIDPRMFD 120
Query: 151 YMSENDTSNEKNTIVFKLHVLCERGGPRLTVKTNELKWLPNGSELPLETKPDSNPSSKPR 210
Y ++ + ++T+ F+L V C R P + P E D ++
Sbjct: 121 YREKDSEGSPEDTVEFELKVKCTRN-----------PQAPKDATTPDELYKDHVVYTRHL 169
Query: 211 TYTSFSSSQDLLPEFSNNPIRPML-DITIARLGPGQEIELEAHAVKGIGKTHAKWSPVAT 269
T+T S ++ F N P +P+ DI +A+L PGQEI+L+ H +KG G+ HAK+SPVAT
Sbjct: 170 TWTPIGSQAEI---FGNKPPKPVYDDIILAKLRPGQEIDLKLHCMKGTGQDHAKFSPVAT 226
Query: 270 AWYRMLPEIVLLEDVEDEDAEKLVKTCPVNVFDIEDIGSGKKRATVAQPRACTLCRECLR 329
A YR+LPEIVLL +V DE AE+L V ++++ G K A VA RA T R +
Sbjct: 227 ASYRLLPEIVLLREVRDEQAERLQGCFAKGVIELDETDDGHKVARVANARADTCSRNVFQ 286
Query: 330 CGEEWEKRVSIRRVKDHFI 348
++ + V + RVKDHFI
Sbjct: 287 Y-DDLKDAVELTRVKDHFI 304
>gi|354492493|ref|XP_003508382.1| PREDICTED: DNA-directed RNA polymerases I and III subunit
RPAC1-like [Cricetulus griseus]
Length = 302
Score = 237 bits (604), Expect = 6e-60, Method: Compositional matrix adjust.
Identities = 132/278 (47%), Positives = 180/278 (64%), Gaps = 22/278 (7%)
Query: 75 NFRVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLA 134
NFRV+V+ + ++ +EFD++GIDAAIANAFRRIL+AE+PTMA+EKVL+ NNTS++QDE+LA
Sbjct: 4 NFRVDVVHMDENTLEFDMVGIDAAIANAFRRILLAEVPTMAVEKVLVYNNTSIVQDEILA 63
Query: 135 HRLGLIPIIVDPRLFEYMSEN-DTSNEKNTIVFKLHVLCERGGPRLTVKTNELKWLPNG- 192
HRLGLIPI+ DPRLFEY + + E +T+ F+L V C + PN
Sbjct: 64 HRLGLIPILADPRLFEYRNPGEEEGTEIDTLQFRLQVRCTKN--------------PNAA 109
Query: 193 --SELPLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPMLDITIARLGPGQEIELE 250
S P E + ++ T+ + D+ PE + P+ DI IA+L PGQEI+L
Sbjct: 110 KDSSDPNELYVNHKVYTRHMTWVPLGNQADVFPEGTIRPVHD--DILIAQLRPGQEIDLV 167
Query: 251 AHAVKGIGKTHAKWSPVATAWYRMLPEIVLLEDVEDEDAEKLVKTCPVNVFDIEDIGSGK 310
H VKGIGK HAK+SPVATA YR+LP+I LLE VE E AE+L + V +++++ G+
Sbjct: 168 MHCVKGIGKDHAKFSPVATASYRLLPDITLLEPVEGEAAEELSRCFSPGVIEVQEV-QGQ 226
Query: 311 KRATVAQPRACTLCRECLRCGEEWEKRVSIRRVKDHFI 348
K A VA R T RE R E+ +K V + RV+DH+I
Sbjct: 227 KLARVANARLDTFSREIFR-NEKLKKAVRLARVRDHYI 263
>gi|301095581|ref|XP_002896890.1| DNA-directed RNA polymerase I and III subunit RPAC1, putative
[Phytophthora infestans T30-4]
gi|262108537|gb|EEY66589.1| DNA-directed RNA polymerase I and III subunit RPAC1, putative
[Phytophthora infestans T30-4]
Length = 339
Score = 236 bits (603), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 132/284 (46%), Positives = 178/284 (62%), Gaps = 43/284 (15%)
Query: 77 RVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHR 136
+V++ LT D++ FDLIG+DAAIANA RRIL+AE+PTMAIE V I NN+S+IQDEVLAHR
Sbjct: 33 KVKIQSLTDDEIVFDLIGVDAAIANALRRILLAEVPTMAIEHVYIWNNSSIIQDEVLAHR 92
Query: 137 LGLIPIIVDPRLFEYMSENDTS--NEKNTIVFKLHVLCE---------RGGPRLTVKTNE 185
LGLIP+ VDPR F+ +N+ + ++NTIVFKL V C+ +V + +
Sbjct: 93 LGLIPLNVDPREFQAFPDNEEAEATDENTIVFKLDVTCKFDPEHPKDPTKAIHSSVYSRD 152
Query: 186 LKWLPNGSELPLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPML-DITIARLGPG 244
L+W+P G++ E IRP+ DI +A+L PG
Sbjct: 153 LEWVPQGNQ-----------------------------EERFGSIRPVHEDILMAKLRPG 183
Query: 245 QEIELEAHAVKGIGKTHAKWSPVATAWYRMLPEIVLLEDVEDEDAEKLVKTCPVNVFDIE 304
Q I LEAH KG+GK HAK+SPVATA YR++P++ L+E VE DA++LV+ C + +FDIE
Sbjct: 184 QSIALEAHCRKGVGKDHAKFSPVATASYRLMPKVELMEKVEGTDAKRLVEECQIGLFDIE 243
Query: 305 DIGSGKKRATVAQPRACTLCRECLRCGEEWEKRVSIRRVKDHFI 348
DIG G A V RACT+CR C+R W +++ + R DHFI
Sbjct: 244 DIG-GVPTAVVKDQRACTMCRNCIR-EPSWNEKIRLGRQSDHFI 285
>gi|403361811|gb|EJY80614.1| DNA-directed RNA polymerase I 40 kDa polypeptide [Oxytricha
trifallax]
Length = 405
Score = 236 bits (602), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 132/300 (44%), Positives = 183/300 (61%), Gaps = 34/300 (11%)
Query: 65 NSLQLDHFCNNFRVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANN 124
+ + L F N +E+++L +++ FDLIG++ +ANA RRILIAE+PTMAIEKV + N
Sbjct: 70 DKVSLKDFIENSNIEILKLDDEEIIFDLIGVEPPLANALRRILIAEIPTMAIEKVNMWQN 129
Query: 125 TSVIQDEVLAHRLGLIPIIVDPRLFEYMS----------ENDTSNEKNTIVFKLHVLCER 174
TS+I DE LAHR+GLIPI DPR FE+ + DT E +++ FKLHV C +
Sbjct: 130 TSIIPDENLAHRMGLIPIKADPRQFEFHEKSTLENDQGEQQDTYTEDDSLRFKLHVRCTK 189
Query: 175 GGPRLTVKTN----ELKWLPNGSELPLETK--PDSNPSSKPRTYTSFSSSQDLLPEFSNN 228
PR V N E K N + L + K P N + K F +
Sbjct: 190 KDPRAPVIINNTVDEEKLYNNANVLSGQLKWIPVGNQAQK----------------FGVD 233
Query: 229 PIRPMLD-ITIARLGPGQEIELEAHAVKGIGKTHAKWSPVATAWYRMLPEIVLLEDVEDE 287
I+P+ D I IA+L PGQEIE+E KGIGKTHAKWSPV+TA+YR++P+I + +D+ +E
Sbjct: 234 GIKPLFDDILIAKLRPGQEIEMELICEKGIGKTHAKWSPVSTAFYRLVPDIKITQDIMNE 293
Query: 288 DAEKLVKTCPVNVFDIEDIGSGKKRATVAQPRACTLCRECLRCGEEWEKRVSIRRVKDHF 347
+A +L CP V+DIED+G KRA V R CT CREC+R E++ +R+ + ++KD F
Sbjct: 294 EAVELKNLCPTGVYDIEDLGKKGKRAIVGDVRKCTTCRECIR-PEKFRERIDLGKIKDRF 352
>gi|49618929|gb|AAT68049.1| RNA polymerase I 140 kDa subunit [Danio rerio]
Length = 343
Score = 236 bits (602), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 139/303 (45%), Positives = 187/303 (61%), Gaps = 20/303 (6%)
Query: 47 IHTENVMYSGAYASMGVDNSLQLDHFCNNFRVEVIRLTKDDMEFDLIGIDAAIANAFRRI 106
+HT + Y G Y G D++ + F NFR+E+I ++ +EFD+IGIDAAIANAFRRI
Sbjct: 21 VHTTD--YPGNYP--GYDDTWDFEKFKKNFRIEIISSDENTLEFDMIGIDAAIANAFRRI 76
Query: 107 LIAELPTMAIEKVLIANNTSVIQDEVLAHRLGLIPIIVDPRLFEYM-SENDTSNEKNTIV 165
L+AE+PTMAIEKV I NNTS+IQDE+LAHRLGL+PI DPRLFEY SE+ E +TI
Sbjct: 77 LLAEVPTMAIEKVFIYNNTSIIQDEILAHRLGLVPIKADPRLFEYRNSEDQEGTEIDTIQ 136
Query: 166 FKLHVLCERGGPRLTVKTNELKWLPNGSELPLETKPDSNPSSKPRTYTSFSSSQDLLPEF 225
+L V C R PR P S P E + S + + D+ +
Sbjct: 137 LQLKVKCTR-NPR----------APKDSSDPKELYLNHMIYSGDIKWLPIGNQADVFADA 185
Query: 226 SNNPIRPMLDITIARLGPGQEIELEAHAVKGIGKTHAKWSPVATAWYRMLPEIVLLEDVE 285
P+ DI +A++ PGQE+++ H VKGIGK HAK+SPVATA YR+LPEI LL+ +E
Sbjct: 186 KIGPVHG--DILLAQVRPGQELDIVMHCVKGIGKNHAKFSPVATASYRLLPEITLLQTIE 243
Query: 286 DEDAEKLVKTCPVNVFDIEDIGSGKKRATVAQPRACTLCRECLRCGEEWEKRVSIRRVKD 345
E AE+L + V ++E++ +G+K A V R T RE LR ++ + V + RV+D
Sbjct: 244 GEQAERLKRCFSPGVIELENV-NGRKVAKVVNSRLDTCSREVLR-HDDLKSLVKLGRVRD 301
Query: 346 HFI 348
HFI
Sbjct: 302 HFI 304
>gi|301092813|ref|XP_002997258.1| DNA-directed RNA polymerase I and III subunit RPAC1, putative
[Phytophthora infestans T30-4]
gi|262111439|gb|EEY69491.1| DNA-directed RNA polymerase I and III subunit RPAC1, putative
[Phytophthora infestans T30-4]
Length = 343
Score = 236 bits (602), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 139/322 (43%), Positives = 191/322 (59%), Gaps = 52/322 (16%)
Query: 39 VQCNLDAPIHTENVMYSGAYASMGVDNSLQLDHFCNNFRVEVIRLTKDDMEFDLIGIDAA 98
V+ DAP H +V +Y+ ++ +V++ LT D++ FDLIG+DAA
Sbjct: 8 VRVGQDAP-HQPDVESESSYSF--------VEQSKRQVKVKIQSLTDDEIVFDLIGVDAA 58
Query: 99 IANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRLGLIPIIVDPRLFEYMSENDTS 158
IANA RRIL+AE+PTMAIE V I NN+S+IQDEVLAHRLGLIP+ VDPR F+ +N+ +
Sbjct: 59 IANALRRILLAEVPTMAIEHVYIWNNSSIIQDEVLAHRLGLIPLNVDPREFQAFPDNEEA 118
Query: 159 --NEKNTIVFKLHVLCE---------RGGPRLTVKTNELKWLPNGSELPLETKPDSNPSS 207
++NTIVFKL V C+ +V + +L+W+P G++
Sbjct: 119 EATDENTIVFKLDVTCKFDPEHPKDPTKAIHSSVYSRDLEWVPQGNQ------------- 165
Query: 208 KPRTYTSFSSSQDLLPEFSNNPIRPML-DITIARLGPGQEIELEAHAVKGIGKTHAKWSP 266
E IRP+ DI +A+L PGQ I LEAH KG+GK HAK+SP
Sbjct: 166 ----------------EERFGSIRPVHEDILMAKLRPGQSIALEAHCRKGVGKDHAKFSP 209
Query: 267 VATAWYRMLPEIVLLEDVEDEDAEKLVKTCPVNVFDIEDIGSGKKRATVAQPRACTLCRE 326
VATA YR++P++ L+E VE DA++LV+ C + +FDIEDIG G A V RACT+CR
Sbjct: 210 VATASYRLMPKVELMEKVEGTDAKRLVEECHIGLFDIEDIG-GVPTAVVKDQRACTMCRN 268
Query: 327 CLRCGEEWEKRVSIRRVKDHFI 348
C+R W +++ + R DHFI
Sbjct: 269 CIR-EPSWNEKIRLGRQSDHFI 289
>gi|390348474|ref|XP_795508.3| PREDICTED: DNA-directed RNA polymerases I and III subunit
RPAC1-like [Strongylocentrotus purpuratus]
Length = 350
Score = 236 bits (601), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 143/336 (42%), Positives = 197/336 (58%), Gaps = 49/336 (14%)
Query: 31 HIEFQRTRVQCNLDAPIHTENVMYSGAYASMGVDNSLQLDHFCNNFRVEVIRLTKDDMEF 90
H+E +TRV+ + + + G Y +G D+S +D F NFR++VI LT ++EF
Sbjct: 3 HVEDMKTRVRLLEHGVDNVHSSSFPGNY--VGSDDSWSMDKFTKNFRIDVISLTHSELEF 60
Query: 91 DLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRLGLIPIIVDPRLFE 150
D++G+D A+ANAFRRIL+AE+PTMAIEKV I NNTS+IQDE+LAHRLGLIPI DPR+FE
Sbjct: 61 DMVGVDPAVANAFRRILLAEVPTMAIEKVSIFNNTSIIQDEILAHRLGLIPIKADPRIFE 120
Query: 151 YMSENDTSNE----KNTIVFKLHVLCERGGPRLT--------------VKTNELKWLPNG 192
Y E +T +E ++TI F+L V C + P + V T KW
Sbjct: 121 YREEVNTGDETGTGEDTIEFQLKVKCTK-NPNASKDATDPDELYKNAKVTTEHFKW---- 175
Query: 193 SELPLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPMLDITIARLGPGQEIELEAH 252
+PLE + + + P+ + + DI IA+L PGQEI+L+ H
Sbjct: 176 --IPLENQEE---TYGPKAFAPVNK-----------------DILIAKLRPGQEIDLKMH 213
Query: 253 AVKGIGKTHAKWSPVATAWYRMLPEIVLLEDVEDEDAEKLVKTCPVNVFDIEDIGSGKKR 312
VKGIGK HAK+SPVATA YR++PEI+L ED+ E A+KL + V D+E +G
Sbjct: 214 CVKGIGKDHAKFSPVATASYRLMPEIILTEDIVGERAKKLQQCFSSGVIDVEK-RNGVPV 272
Query: 313 ATVAQPRACTLCRECLRCGEEWEKRVSIRRVKDHFI 348
A VA PR T RE ++ + V + R++DHFI
Sbjct: 273 AVVACPRRDTCGREVF-SHDDLKDCVKLNRIRDHFI 307
>gi|41056007|ref|NP_956860.1| DNA-directed RNA polymerases I and III subunit RPAC1 [Danio rerio]
gi|34193909|gb|AAH56581.1| Polymerase (RNA) I polypeptide C [Danio rerio]
Length = 347
Score = 236 bits (601), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 139/303 (45%), Positives = 187/303 (61%), Gaps = 20/303 (6%)
Query: 47 IHTENVMYSGAYASMGVDNSLQLDHFCNNFRVEVIRLTKDDMEFDLIGIDAAIANAFRRI 106
+HT + Y G Y G D++ + F NFR+E+I ++ +EFD+IGIDAAIANAFRRI
Sbjct: 25 VHTTD--YPGNYP--GYDDTWDFEKFKKNFRIEIISSDENTLEFDMIGIDAAIANAFRRI 80
Query: 107 LIAELPTMAIEKVLIANNTSVIQDEVLAHRLGLIPIIVDPRLFEYM-SENDTSNEKNTIV 165
L+AE+PTMAIEKV I NNTS+IQDE+LAHRLGL+PI DPRLFEY SE+ E +TI
Sbjct: 81 LLAEVPTMAIEKVFIYNNTSIIQDEILAHRLGLVPIKADPRLFEYRNSEDQEGTEIDTIQ 140
Query: 166 FKLHVLCERGGPRLTVKTNELKWLPNGSELPLETKPDSNPSSKPRTYTSFSSSQDLLPEF 225
+L V C R PR P S P E + S + + D+ +
Sbjct: 141 LQLKVKCTR-NPR----------APKDSSDPKELYLNHMIYSGDIKWLPIGNQADVFADA 189
Query: 226 SNNPIRPMLDITIARLGPGQEIELEAHAVKGIGKTHAKWSPVATAWYRMLPEIVLLEDVE 285
P+ DI +A++ PGQE+++ H VKGIGK HAK+SPVATA YR+LPEI LL+ +E
Sbjct: 190 KIGPVHG--DILLAQVRPGQELDIVMHCVKGIGKDHAKFSPVATASYRLLPEITLLQTIE 247
Query: 286 DEDAEKLVKTCPVNVFDIEDIGSGKKRATVAQPRACTLCRECLRCGEEWEKRVSIRRVKD 345
E AE+L + V ++E++ +G+K A V R T RE LR ++ + V + RV+D
Sbjct: 248 GEQAERLKRCFSPGVIELENV-NGRKVAKVVNSRLDTCSREVLR-HDDLKSLVKLGRVRD 305
Query: 346 HFI 348
HFI
Sbjct: 306 HFI 308
>gi|348665187|gb|EGZ05020.1| hypothetical protein PHYSODRAFT_356217 [Phytophthora sojae]
Length = 343
Score = 236 bits (601), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 132/284 (46%), Positives = 178/284 (62%), Gaps = 43/284 (15%)
Query: 77 RVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHR 136
+V++ LT +++ FDLIG+DAAIANA RRIL+AE+PTMAIE V I NN+S+IQDEVLAHR
Sbjct: 37 KVKIQSLTDEEIVFDLIGVDAAIANALRRILLAEVPTMAIEHVYIWNNSSIIQDEVLAHR 96
Query: 137 LGLIPIIVDPRLFEYMSENDTS--NEKNTIVFKLHVLCE---------RGGPRLTVKTNE 185
LGL+P+ VDPR F+ +N+ + ++NTIVFKL V C+ +V + +
Sbjct: 97 LGLVPLNVDPREFQAFPDNEEAEATDENTIVFKLDVTCKFDPEHPKDPTKAIHSSVYSRD 156
Query: 186 LKWLPNGSELPLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPML-DITIARLGPG 244
L+W+P G++ E IRP+ DI IA+L PG
Sbjct: 157 LEWVPQGNQ-----------------------------EERFGSIRPVHEDILIAKLRPG 187
Query: 245 QEIELEAHAVKGIGKTHAKWSPVATAWYRMLPEIVLLEDVEDEDAEKLVKTCPVNVFDIE 304
Q I LEAH KG+GK HAK+SPVATA YR++P++ L E V+ DA+KLV+ C + +FDIE
Sbjct: 188 QSIALEAHCRKGVGKDHAKFSPVATASYRLMPKVELTEKVQGADAKKLVEECQIGLFDIE 247
Query: 305 DIGSGKKRATVAQPRACTLCRECLRCGEEWEKRVSIRRVKDHFI 348
DIG G A V RACT+CR C+R W +++S+ R DHFI
Sbjct: 248 DIG-GVPTAVVKDQRACTMCRNCIR-EPGWNEKISLGRQSDHFI 289
>gi|401400700|ref|XP_003880837.1| rna polymerase II, related [Neospora caninum Liverpool]
gi|325115249|emb|CBZ50804.1| rna polymerase II, related [Neospora caninum Liverpool]
Length = 346
Score = 235 bits (600), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 135/324 (41%), Positives = 182/324 (56%), Gaps = 39/324 (12%)
Query: 32 IEFQRTRVQCNLDAPIHTENVMYSGAY-ASMGVDNSLQLDHFCNNFRVEVIRLTKDDMEF 90
I R+ C + P HT + Y+GA+ +S VD+ +D FC ++ + ++ + + F
Sbjct: 14 IPLNSNRLVCAAEGPRHTSSGGYAGAFLSSSYVDDVFSIDKFCERTFIKFLSVSPERVVF 73
Query: 91 DLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRLGLIPIIVDPRLFE 150
+L G+DAAI NA RRILI+E+PT+AIE V I NT V+QDEVLAHRLGLIP +VDP
Sbjct: 74 ELKGVDAAIPNALRRILISEVPTIAIETVQIWQNTGVVQDEVLAHRLGLIPFVVDPTALN 133
Query: 151 YMSENDTSNEKNTIVFKLHVLC--ERGGPR---LTVKTNELKWLPNGSELPLETKPDSNP 205
Y N ++N + LHV C + GP L V ++KW P +P
Sbjct: 134 YRQPNQEFTDENALRVSLHVKCTEQSLGPHQTSLPVYARDIKWEP------------MSP 181
Query: 206 SSKPRTYTSFSSSQDLLPEFSNNPIRPML-DITIARLGPGQEIELEAHAVKGIGKTHAKW 264
S K F+ NP R + DI I +L PGQEIEL+A+ KG+GKTHAKW
Sbjct: 182 SQK--------------EAFAANPPRAVHPDILITKLRPGQEIELKAYLEKGVGKTHAKW 227
Query: 265 SPVATAWYRMLPEIVLLEDVEDEDAEKLVKTCPVNVFDIEDIGSGKKRATVAQPRACTLC 324
SPV TA YR+ PEIV E ++ E+A L CP+ VFD+ED A PR CT C
Sbjct: 228 SPVCTAVYRLEPEIVFKEPIQGEEASDLCSLCPMGVFDVEDTTG---EAYARYPRNCTTC 284
Query: 325 RECLRCGEEWEKRVSIRRVKDHFI 348
R C+ E + + +R++KDHFI
Sbjct: 285 RACI---ERFPNGIELRKIKDHFI 305
>gi|50740586|ref|XP_419502.1| PREDICTED: DNA-directed RNA polymerases I and III subunit RPAC1
isoform 2 [Gallus gallus]
Length = 346
Score = 235 bits (600), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 140/303 (46%), Positives = 187/303 (61%), Gaps = 20/303 (6%)
Query: 47 IHTENVMYSGAYASMGVDNSLQLDHFCNNFRVEVIRLTKDDMEFDLIGIDAAIANAFRRI 106
+HT + + G Y G D++ F FRV+V+R +EFD++GIDAAIANAFRRI
Sbjct: 24 VHTTD--FPGNYP--GYDDAWDQRRFEEAFRVDVVREEDGVLEFDMVGIDAAIANAFRRI 79
Query: 107 LIAELPTMAIEKVLIANNTSVIQDEVLAHRLGLIPIIVDPRLFEYMSEND-TSNEKNTIV 165
L+AE+PTMA+EKV + NNTS++QDE+LAHRLGLIPI DPRLFEY ++ D E +T+
Sbjct: 80 LLAEVPTMAVEKVFVYNNTSIVQDEILAHRLGLIPIRADPRLFEYRNQGDEEGTEIDTLQ 139
Query: 166 FKLHVLCERGGPRLTVKTNELKWLPNGSELPLETKPDSNPSSKPRTYTSFSSSQDLLPEF 225
F+L + C R P+ ++++ P E + SK T+ + DL P+
Sbjct: 140 FQLKIKCSR-NPQAAKESSD----------PNELYFNHKVYSKHMTWVPLGNQTDLFPDA 188
Query: 226 SNNPIRPMLDITIARLGPGQEIELEAHAVKGIGKTHAKWSPVATAWYRMLPEIVLLEDVE 285
P+ DI IA L PGQEI++ H VKGIGK HAK+SPVATA YR+LP+I LL+ VE
Sbjct: 189 DFRPVHD--DILIALLRPGQEIDVLMHCVKGIGKDHAKFSPVATASYRLLPDITLLQPVE 246
Query: 286 DEDAEKLVKTCPVNVFDIEDIGSGKKRATVAQPRACTLCRECLRCGEEWEKRVSIRRVKD 345
DE AE L K V +I++I GKK A VA R T RE R E + V + RV++
Sbjct: 247 DEAAETLQKCFSPGVIEIQNI-KGKKVARVANARLDTFSREVFR-HEGLKNLVRLARVRN 304
Query: 346 HFI 348
H+I
Sbjct: 305 HYI 307
>gi|147901420|ref|NP_001085237.1| polymerase (RNA) I polypeptide C, 30kDa [Xenopus laevis]
gi|47937458|gb|AAH72033.1| MGC78824 protein [Xenopus laevis]
Length = 347
Score = 235 bits (599), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 139/318 (43%), Positives = 193/318 (60%), Gaps = 49/318 (15%)
Query: 47 IHTENVMYSGAYASMGVDNSLQLDHFCNNFRVEVIRLTKDDMEFDLIGIDAAIANAFRRI 106
+HT + + G Y MG D++ F NFR++++++ D +EFD++GIDA+IANAFRRI
Sbjct: 24 VHTTD--FPGNY--MGYDDTWNQGRFEKNFRIDIVKMEDDILEFDMVGIDASIANAFRRI 79
Query: 107 LIAELPTMAIEKVLIANNTSVIQDEVLAHRLGLIPIIVDPRLFEYMSENDT-SNEKNTIV 165
L++E+PT+A+EKV + NNTS+IQDE+LAHRLGLIPI DPRLFEY S +D E +T+
Sbjct: 80 LLSEVPTVAVEKVYVYNNTSIIQDEILAHRLGLIPIRADPRLFEYRSADDAEGTEIDTLQ 139
Query: 166 FKLHVLCERGGPRLT--------------VKTNELKWLPNGSELPLETKPDSNPSSKPRT 211
F+L+V C R PR + V T +KWLP G+++
Sbjct: 140 FELNVKCTR-NPRASKDCSDPNELYLNHKVYTGHMKWLPQGNQV---------------- 182
Query: 212 YTSFSSSQDLLPEFSNNPIRPM-LDITIARLGPGQEIELEAHAVKGIGKTHAKWSPVATA 270
DL PE +P RP+ DI IA+L PGQEI + H VKGIGK HAK+SPVATA
Sbjct: 183 --------DLFPE--TDPPRPVHKDILIAQLRPGQEINVIMHCVKGIGKDHAKFSPVATA 232
Query: 271 WYRMLPEIVLLEDVEDEDAEKLVKTCPVNVFDIEDIGSGKKRATVAQPRACTLCRECLRC 330
YR+LPE+ LL +E E A+KL V ++++ +GK+ A V R T RE R
Sbjct: 233 SYRLLPEVTLLSSIEGELADKLQGCFSPGVISVDEV-NGKRVARVENARMDTCSREIFR- 290
Query: 331 GEEWEKRVSIRRVKDHFI 348
++ + V + RV+DH+I
Sbjct: 291 HDDLKNLVRMARVRDHYI 308
>gi|301626012|ref|XP_002942192.1| PREDICTED: DNA-directed RNA polymerases I and III subunit RPAC1
[Xenopus (Silurana) tropicalis]
Length = 347
Score = 235 bits (599), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 141/318 (44%), Positives = 194/318 (61%), Gaps = 49/318 (15%)
Query: 47 IHTENVMYSGAYASMGVDNSLQLDHFCNNFRVEVIRLTKDDMEFDLIGIDAAIANAFRRI 106
+HT + + G Y MG +++ F NNFR++++++ D +EFD++GIDA+IANAFRRI
Sbjct: 24 VHTTD--FPGNY--MGYNDTWNYGRFENNFRIDIVKMEGDTLEFDMVGIDASIANAFRRI 79
Query: 107 LIAELPTMAIEKVLIANNTSVIQDEVLAHRLGLIPIIVDPRLFEYMS-ENDTSNEKNTIV 165
L+AE+PTMA+EKV + NNTS+IQDE+LAHRLGLIPI VDPRLFEY S E E +T+
Sbjct: 80 LLAEVPTMAVEKVYVYNNTSIIQDEILAHRLGLIPIRVDPRLFEYRSAEEGEGTEIDTLQ 139
Query: 166 FKLHVLCERGGPRLT--------------VKTNELKWLPNGSELPLETKPDSNPSSKPRT 211
F+L+V C R PR + V T+ +KWLP G++
Sbjct: 140 FELNVKCTR-NPRASKDCSDPNELYLNHKVYTSHMKWLPQGNQ----------------- 181
Query: 212 YTSFSSSQDLLPEFSNNPIRPML-DITIARLGPGQEIELEAHAVKGIGKTHAKWSPVATA 270
DL PE +P RP+ DI IA+L PGQEI + H VKGIGK HAK+SPVATA
Sbjct: 182 -------SDLFPE--TDPPRPVHGDILIAQLRPGQEISVIMHCVKGIGKDHAKFSPVATA 232
Query: 271 WYRMLPEIVLLEDVEDEDAEKLVKTCPVNVFDIEDIGSGKKRATVAQPRACTLCRECLRC 330
YR+LPEI LL +E E A++L + V ++++ GK+ A V R T RE R
Sbjct: 233 SYRLLPEITLLCPIEGELADRLQRCFSPGVIGVDEV-DGKRVARVINARTDTCGREIFR- 290
Query: 331 GEEWEKRVSIRRVKDHFI 348
++ + V + RV+D++I
Sbjct: 291 HDDLKDLVRMARVRDYYI 308
>gi|427788233|gb|JAA59568.1| Putative rna polymerase i and iii subunit [Rhipicephalus
pulchellus]
Length = 344
Score = 234 bits (598), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 141/320 (44%), Positives = 188/320 (58%), Gaps = 20/320 (6%)
Query: 31 HIEFQRTRVQCNLDAPIHTENVMYSGAYASMGVDNSLQLDHFCNNFRVEVIRLTKDDMEF 90
H+E RT V +HTE V + GA +GVD S F FRV +I + +EF
Sbjct: 3 HLERMRTHVHLREHDLLHTETVDHCGAI--LGVDYSWDFQKFVKKFRVGIISMDDTTIEF 60
Query: 91 DLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRLGLIPIIVDPRLFE 150
DL+G+D +IANA RRIL+AE+PTMA +KV + NNT +IQDEVLAHR+GL+P +DPR+FE
Sbjct: 61 DLVGLDPSIANAIRRILLAEVPTMAPDKVYLYNNTGIIQDEVLAHRIGLVPFNIDPRMFE 120
Query: 151 YM-SENDTSNEKNTIVFKLHVLCERGGPRLTVKTNELKWLPNGSELPLETKPDSNPSSKP 209
Y SE+D S E +T+ F+L V C + P + P E D +K
Sbjct: 121 YRESESDGSPE-DTVEFELKVKCTKN-----------PQAPKDATTPDELYKDHMVYTKH 168
Query: 210 RTYTSFSSSQDLLPEFSNNPIRPML-DITIARLGPGQEIELEAHAVKGIGKTHAKWSPVA 268
T+ S ++ F N P RP+ DI +A+L PGQEI+L+ H VKG G+ HAK+SPVA
Sbjct: 169 LTWNPLGSQAEI---FGNKPPRPVHDDIILAKLRPGQEIDLKLHCVKGTGQVHAKFSPVA 225
Query: 269 TAWYRMLPEIVLLEDVEDEDAEKLVKTCPVNVFDIEDIGSGKKRATVAQPRACTLCRECL 328
TA YR+LPEI LL V DE AE+L V ++++ G K A VA RA T R
Sbjct: 226 TASYRLLPEIRLLRPVRDEQAERLQGCFSKGVIELDEEPDGHKVARVANARADTCSRNVF 285
Query: 329 RCGEEWEKRVSIRRVKDHFI 348
R ++ + V + RVKDH+I
Sbjct: 286 RF-DDLKDAVELSRVKDHYI 304
>gi|330840939|ref|XP_003292464.1| RNA polymerase III subunit [Dictyostelium purpureum]
gi|325077271|gb|EGC30994.1| RNA polymerase III subunit [Dictyostelium purpureum]
Length = 338
Score = 234 bits (597), Expect = 5e-59, Method: Compositional matrix adjust.
Identities = 134/324 (41%), Positives = 188/324 (58%), Gaps = 47/324 (14%)
Query: 30 PHIEFQRTRVQCNLDAPIHTENVMYSGAYASMGVDNSLQLDHFCNNFRVEVIRLTKDDME 89
P++E +RT+V + + YSGAY S+G DNS L+ F NF++ ++ ++
Sbjct: 19 PNLENKRTKVTVTNSSVENARGTYYSGAYTSIGFDNSFSLEKFKENFKINILSEKPYELV 78
Query: 90 FDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRLGLIPIIVDPRLF 149
F+++G+DA IANA RRILI+E+PTMAIEKV I NNTS++QDEVLAHRLGLIPI VDPR F
Sbjct: 79 FEMMGVDAPIANAIRRILISEVPTMAIEKVYIINNTSILQDEVLAHRLGLIPIKVDPRKF 138
Query: 150 EYMSENDTSNEKNTIVFKLHVLCER--GGPRL--TVKTNELKWLPNGSELPLETKPDSNP 205
+ N ++T++FKL V CER G + TV + L+W+P+ ++ + + +P
Sbjct: 139 NFHLPNKEYTAEDTLIFKLKVKCERDANGKIINDTVLSKHLEWVPHDDQIAMFPNEEDHP 198
Query: 206 SSKPRTYTSFSSSQDLLPEFSNNPIRPML-DITIARLGPGQEIELEAHAVKGIGKTHAKW 264
RP+ DI I RL PGQ I+++ + K IG+ H KW
Sbjct: 199 -------------------------RPVEDDIPIMRLRPGQVIDVQLYCEKNIGREHIKW 233
Query: 265 SPVATAWYRMLPEIVLLEDVEDEDAEKLVKTCPVNVFDIEDIGSGKKRATVAQPRACTLC 324
SPV TA YR+LP I + E ++ E AEKLV TCP VFDIED GS V R +L
Sbjct: 234 SPVCTASYRLLPVISVDESIQGESAEKLVNTCPKKVFDIEDSGS------VVAARIQSL- 286
Query: 325 RECLRCGEEWEKRVSIRRVKDHFI 348
++++ R++DHFI
Sbjct: 287 ----------NQKLNFERIRDHFI 300
>gi|384495741|gb|EIE86232.1| hypothetical protein RO3G_10943 [Rhizopus delemar RA 99-880]
Length = 247
Score = 234 bits (597), Expect = 5e-59, Method: Compositional matrix adjust.
Identities = 131/269 (48%), Positives = 170/269 (63%), Gaps = 42/269 (15%)
Query: 27 KLPPHIEFQRTRVQCNLDAPIHTENVMYSGAYASMGVDNSLQLDHFCNNFRVEVIRLTKD 86
KLP ++E RTRV D P + +DNS L+ F NF+V++ RL+K
Sbjct: 5 KLPENVELLRTRVASGSDYP-----------HQYPAIDNSFNLEEFKKNFKVKIQRLSKH 53
Query: 87 DMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRLGLIPIIVDP 146
+EFDLIGIDA+IANAFRRI+IAE+PTMAIEKV + NNTS+IQDEV+AHRLGLIPI+ DP
Sbjct: 54 SVEFDLIGIDASIANAFRRIMIAEVPTMAIEKVYVMNNTSIIQDEVVAHRLGLIPILADP 113
Query: 147 RLFEYMSENDTSNEKNTIVFKLHVLCERGGPRLTVKTNELKWLPNGSELPLETKPDSNPS 206
+ F+YM+E+ + NT+VF+L CE + P S P ET P
Sbjct: 114 KEFDYMTEDGGPTDLNTLVFRLKKKCE--------------FNPEAS--PDETDPHK--- 154
Query: 207 SKPRTYTSFSSSQDLLPE--------FSNNPIRPML-DITIARLGPGQEIELEAHAVKGI 257
+ S+ S+DL+ E F+NNP RP+ DI IA+L PGQE+E+E H KG+
Sbjct: 155 ---KYINSYVYSKDLIWEPKGNQEEKFANNPPRPVHDDIVIAKLRPGQEMEMELHCQKGV 211
Query: 258 GKTHAKWSPVATAWYRMLPEIVLLEDVED 286
G+ HAKWSPVATA YR+LPEI +LE + D
Sbjct: 212 GREHAKWSPVATASYRLLPEITILEPITD 240
>gi|449283222|gb|EMC89903.1| DNA-directed RNA polymerases I and III subunit RPAC1, partial
[Columba livia]
Length = 323
Score = 233 bits (595), Expect = 9e-59, Method: Compositional matrix adjust.
Identities = 138/303 (45%), Positives = 187/303 (61%), Gaps = 20/303 (6%)
Query: 47 IHTENVMYSGAYASMGVDNSLQLDHFCNNFRVEVIRLTKDDMEFDLIGIDAAIANAFRRI 106
+HT + + G Y G +++ F FRV++IR + +EFD++GIDAAIANAFRRI
Sbjct: 1 VHTTD--FPGNYP--GYEDAWDQRRFEEAFRVDIIREEEGALEFDMVGIDAAIANAFRRI 56
Query: 107 LIAELPTMAIEKVLIANNTSVIQDEVLAHRLGLIPIIVDPRLFEYMSEND-TSNEKNTIV 165
L+AE+PTMA+EKV + NNTS++QDE+LAHRLGLIPI DPRLFEY ++ D E +T+
Sbjct: 57 LLAEVPTMAVEKVFVYNNTSIVQDEILAHRLGLIPIRADPRLFEYRNQGDEEGTEIDTLQ 116
Query: 166 FKLHVLCERGGPRLTVKTNELKWLPNGSELPLETKPDSNPSSKPRTYTSFSSSQDLLPEF 225
F+L + C R P+ ++++ P E + SK T+ + DL P+
Sbjct: 117 FQLKIKCSR-NPQAAKESSD----------PNELYFNHKVYSKHMTWVPLGNQTDLFPDA 165
Query: 226 SNNPIRPMLDITIARLGPGQEIELEAHAVKGIGKTHAKWSPVATAWYRMLPEIVLLEDVE 285
P+ DI IA L PGQEI++ H VKGIGK HAK+SPVATA YR+LP+I LL+ +E
Sbjct: 166 DFRPVHD--DILIALLRPGQEIDVLMHCVKGIGKDHAKFSPVATASYRLLPDITLLQPIE 223
Query: 286 DEDAEKLVKTCPVNVFDIEDIGSGKKRATVAQPRACTLCRECLRCGEEWEKRVSIRRVKD 345
DE AE L K V +I+ I GKK A VA R T RE R E + V + RV++
Sbjct: 224 DEAAETLQKCFSPGVIEIQKI-KGKKVARVANARLDTFSREVFR-HENLKNLVRLARVRN 281
Query: 346 HFI 348
H+I
Sbjct: 282 HYI 284
>gi|348538459|ref|XP_003456708.1| PREDICTED: DNA-directed RNA polymerases I and III subunit
RPAC1-like [Oreochromis niloticus]
Length = 351
Score = 232 bits (592), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 141/307 (45%), Positives = 191/307 (62%), Gaps = 24/307 (7%)
Query: 47 IHTENVMYSGAYASMGVDNSLQLDHFCNNFRVEVIRLTKDDMEFDLIGIDAAIANAFRRI 106
+HT + + G Y G D++ ++ F NFR++V+ L ++ MEFD++GIDAAIANAFRRI
Sbjct: 25 VHTTD--FPGNYP--GYDDTWNVEKFQKNFRIDVVHLDENSMEFDMVGIDAAIANAFRRI 80
Query: 107 LIAELPTMAIEKVLIANNTSVIQDEVLAHRLGLIPIIVDPRLFEYMSENDTSNEK----- 161
L+AE+PTMA+EKV I +NTS++QDEVLAHRLGLIPI DPRLFEY + + S E+
Sbjct: 81 LLAEVPTMAMEKVFIYSNTSIVQDEVLAHRLGLIPIKADPRLFEYRNTGEESAEEEGSEI 140
Query: 162 NTIVFKLHVLCERGGPRLTVKTNELKWLPNGSELPLETKPDSNPSSKPRTYTSFSSSQDL 221
+TI +L + C R PR + +++ P E + SK + + D+
Sbjct: 141 DTIQLQLKIKCSR-NPRASKDSSD----------PRELYLNHMVYSKDIKWVPIGNQADV 189
Query: 222 LPEFSNNPIRPMLDITIARLGPGQEIELEAHAVKGIGKTHAKWSPVATAWYRMLPEIVLL 281
+ P+ DI IA+L PGQE+++ H VKGIGK HAK+SPVATA YR+LPEI LL
Sbjct: 190 FADCCIGPVHD--DILIAQLRPGQELDIVMHCVKGIGKDHAKFSPVATASYRLLPEITLL 247
Query: 282 EDVEDEDAEKLVKTCPVNVFDIEDIGSGKKRATVAQPRACTLCRECLRCGEEWEKRVSIR 341
E VE E AE+L + V D+EDI +G K A V R T RE LR + + V +
Sbjct: 248 EVVEGEKAERLKQCFSRGVIDLEDI-NGTKVAKVVNSRLDTCSREVLR-HSDLKNVVKLG 305
Query: 342 RVKDHFI 348
RV+DHFI
Sbjct: 306 RVRDHFI 312
>gi|346464743|gb|AEO32216.1| hypothetical protein [Amblyomma maculatum]
Length = 340
Score = 232 bits (592), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 139/333 (41%), Positives = 192/333 (57%), Gaps = 46/333 (13%)
Query: 31 HIEFQRTRVQCNLDAPIHTENVMYSGAYASMGVDNSLQLDHFCNNFRVEVIRLTKDDMEF 90
H+E RT V +HTE + GA GVD+S + F NF+V ++ L MEF
Sbjct: 3 HVERMRTHVHLREHDLLHTETSDHCGARP--GVDDSWSIRKFAKNFKVGIVSLDDTTMEF 60
Query: 91 DLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRLGLIPIIVDPRLFE 150
D+IG++ AIANA RRIL+AE+PTMA +KV + NNTS++QDEVLAHR+GL+P +DPR+FE
Sbjct: 61 DMIGLNPAIANAIRRILLAEVPTMAPDKVYLYNNTSIVQDEVLAHRIGLVPFNIDPRMFE 120
Query: 151 YMSENDTSNEKNTIVFKLHVLCERG--GPR-----------LTVKTNELKWLPNGSELPL 197
Y + + ++T+ F+L V C + P+ V T LKW+P GS++ +
Sbjct: 121 YRESGNEGSPEDTVEFELKVKCTKNPHAPKDATVPDELYKDHVVYTKHLKWIPLGSQVEI 180
Query: 198 ETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPML-DITIARLGPGQEIELEAHAVKG 256
F N P +P+ DI +A+L PGQEI+L+ H +KG
Sbjct: 181 ---------------------------FGNKPPKPVHDDIILAKLRPGQEIDLKLHCLKG 213
Query: 257 IGKTHAKWSPVATAWYRMLPEIVLLEDVEDEDAEKLVKTCPVN-VFDIEDIGSGKKRATV 315
G+ HAK+SPVATA YR+LPEI LL V DE AE+L +TC N V ++++ G K A V
Sbjct: 214 TGQVHAKFSPVATASYRLLPEIRLLRPVLDEQAERL-QTCFSNGVIELDETPDGHKVARV 272
Query: 316 AQPRACTLCRECLRCGEEWEKRVSIRRVKDHFI 348
A R T R R ++ + V + RVKDHFI
Sbjct: 273 ANARIDTCSRNVFRF-DDLKDAVELTRVKDHFI 304
>gi|410929907|ref|XP_003978340.1| PREDICTED: DNA-directed RNA polymerases I and III subunit
RPAC1-like [Takifugu rubripes]
Length = 351
Score = 231 bits (590), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 140/314 (44%), Positives = 187/314 (59%), Gaps = 38/314 (12%)
Query: 47 IHTENVMYSGAYASMGVDNSLQLDHFCNNFRVEVIRLTKDDMEFDLIGIDAAIANAFRRI 106
+HT + + G Y + D+S + F NF+++++ L + MEFD++G+DAAI NAFRRI
Sbjct: 25 VHTTD--FPGNYPNF--DDSWDMAKFKKNFQIDLMHLDESQMEFDMMGVDAAITNAFRRI 80
Query: 107 LIAELPTMAIEKVLIANNTSVIQDEVLAHRLGLIPIIVDPRLFEYMSENDTSNEK----- 161
L+AE+PTMAIEKV I NNTS++QDEVLAHRLGLIPI DPRLFEY + D + E
Sbjct: 81 LLAEVPTMAIEKVFIYNNTSIVQDEVLAHRLGLIPIKADPRLFEYRNSGDEATENEGSEI 140
Query: 162 NTIVFKLHVLCERGGPRLTVKTNELKWLPNGSELPLETKPDSNPSSKPRTYTSFSSSQDL 221
+TI +L + C R P +K S+P + +S
Sbjct: 141 DTIQLQLKISCSRN--------------------PASSKDSSDPRELYLNHMVYSKDIHW 180
Query: 222 LP------EFSNNPIRPML-DITIARLGPGQEIELEAHAVKGIGKTHAKWSPVATAWYRM 274
+P F+N I P+ DI IA+L PGQE+++ H +KGIGK HAK+SPVATA YR+
Sbjct: 181 VPIGNQADVFANCSIGPVHGDILIAQLRPGQELDIIMHCIKGIGKDHAKFSPVATASYRL 240
Query: 275 LPEIVLLEDVEDEDAEKLVKTCPVNVFDIEDIGSGKKRATVAQPRACTLCRECLRCGEEW 334
LPEI LLE VE E AE+L + V D+ED +GKK A VA R T RE LR ++
Sbjct: 241 LPEITLLEPVEGEKAERLQRCFFRGVIDLED-SNGKKVAKVANSRLDTCSREVLR-HDDL 298
Query: 335 EKRVSIRRVKDHFI 348
+ V + R +DHFI
Sbjct: 299 KNVVKLGRHRDHFI 312
>gi|405978280|gb|EKC42685.1| DNA-directed RNA polymerases I and III subunit RPAC1 [Crassostrea
gigas]
Length = 472
Score = 228 bits (580), Expect = 4e-57, Method: Compositional matrix adjust.
Identities = 141/326 (43%), Positives = 184/326 (56%), Gaps = 44/326 (13%)
Query: 36 RTRVQCNLDAPIHTENVMYSGAYASMGVDNSLQLDHFCNNFRVEVIRLTKDDMEFDLIGI 95
RTRV N + + + G Y D++ F NFR+++I++ D++EFD++GI
Sbjct: 8 RTRVTLNEHGVDNVHSTDFPGEYPDF--DDAWDFKKFKKNFRIDMIKMNDDELEFDMVGI 65
Query: 96 DAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRLGLIPIIVDPRLFEYMSEN 155
DAAIANAFRRIL+AE+PTMAIEKV I NNTS+IQDEVLAHRLGLIPI DPRLFEY SE
Sbjct: 66 DAAIANAFRRILLAEVPTMAIEKVHIYNNTSIIQDEVLAHRLGLIPIKADPRLFEYKSEG 125
Query: 156 DTSNEKNTIVFKLHVLCERGGPR------------LTVKTNELKWLPNGSELPLETKPDS 203
+ + ++TI+F+L V C + V T LKW+P
Sbjct: 126 EDFSPEDTIIFQLKVKCTKNSQAKDTTDPDEMYKDHKVTTKHLKWIP------------- 172
Query: 204 NPSSKPRTYTSFSSSQDLLPEFSNNPIRPML-DITIARLGPGQEIELEAHAVKGIGKTHA 262
QD + F +RP+ DI IA+L PGQEI++ KGIGK HA
Sbjct: 173 ------------MKGQDTI--FKEGDLRPVNDDILIAKLRPGQEIDIRVFCNKGIGKDHA 218
Query: 263 KWSPVATAWYRMLPEIVLLEDVEDEDAEKLVKTCPVNVFDIEDIGSGKKRATVAQPRACT 322
K+SPVATA YR+LPEI L V AEKL ++C + D +G K A VA R T
Sbjct: 219 KFSPVATASYRLLPEIYLKSPVTGALAEKL-QSCFSPGVIVIDTENGNKVARVANARKDT 277
Query: 323 LCRECLRCGEEWEKRVSIRRVKDHFI 348
RE R + + V +++V+DHFI
Sbjct: 278 CSREVFR-HDNLKDLVELKKVRDHFI 302
>gi|37935546|gb|AAP69818.1| RNA polymerase subunit I [Bos taurus]
Length = 250
Score = 225 bits (573), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 128/263 (48%), Positives = 171/263 (65%), Gaps = 16/263 (6%)
Query: 83 LTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRLGLIPI 142
+ ++ +EFD++GIDAAIANAFRRIL+AE+PTMA+EKVL+ NNTS++QDE+LAHRLGLIPI
Sbjct: 3 MDENSLEFDMVGIDAAIANAFRRILLAEVPTMAVEKVLVYNNTSIVQDEILAHRLGLIPI 62
Query: 143 IVDPRLFEYMSEND-TSNEKNTIVFKLHVLCERGGPRLTVKTNELKWLPNGSELPLETKP 201
DPRLFEY ++ D E +T+ F+L V C R P +++ P E
Sbjct: 63 HADPRLFEYRNQGDEGGTEIDTLQFRLQVRCTR-NPHAAKDSSD----------PNELYV 111
Query: 202 DSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPMLDITIARLGPGQEIELEAHAVKGIGKTH 261
+ ++ T+ + DL PE + P+ DI IA+L PGQEI+L H VKGIGK H
Sbjct: 112 NHRVYTRHMTWVPLGNQADLFPEGAIRPVHD--DILIAQLRPGQEIDLLMHCVKGIGKDH 169
Query: 262 AKWSPVATAWYRMLPEIVLLEDVEDEDAEKLVKTCPVNVFDIEDIGSGKKRATVAQPRAC 321
AK+SPVATA YR+LP+I LLE VE E AE+L + V ++++I GKK A VA PR
Sbjct: 170 AKFSPVATASYRLLPDITLLEPVEGEAAEELSRCFSPGVIEVQEI-QGKKVARVANPRLD 228
Query: 322 TLCRECLRCGEEWEKRVSIRRVK 344
T RE R E+ +K V + RV+
Sbjct: 229 TFSREVFR-NEKLKKVVRLARVR 250
>gi|149069364|gb|EDM18805.1| RNA polymerase 1-1, isoform CRA_b [Rattus norvegicus]
Length = 291
Score = 225 bits (573), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 127/262 (48%), Positives = 170/262 (64%), Gaps = 16/262 (6%)
Query: 88 MEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRLGLIPIIVDPR 147
+EFD++GIDAAIANAFRRIL+AE+PTMA+EKVL+ NNTS++QDE+LAHRLGLIPI+ DPR
Sbjct: 6 LEFDMVGIDAAIANAFRRILLAEVPTMAVEKVLVYNNTSIVQDEILAHRLGLIPILADPR 65
Query: 148 LFEYMSEN-DTSNEKNTIVFKLHVLCERGGPRLTVKTNELKWLPNGSELPLETKPDSNPS 206
LFEY + + E +T+ F+L V C R P +++ P E +
Sbjct: 66 LFEYRNPGEEEGTEIDTLQFRLQVRCTR-NPSAAKDSSD----------PNELYVNHKVY 114
Query: 207 SKPRTYTSFSSSQDLLPEFSNNPIRPMLDITIARLGPGQEIELEAHAVKGIGKTHAKWSP 266
++ T+ + D+ PE + P+ DI IA+L PGQEI+L H VKGIGK HAK+SP
Sbjct: 115 TRHMTWVPLGNQADVFPEGTVRPVHD--DILIAQLRPGQEIDLMMHCVKGIGKDHAKFSP 172
Query: 267 VATAWYRMLPEIVLLEDVEDEDAEKLVKTCPVNVFDIEDIGSGKKRATVAQPRACTLCRE 326
VATA YR+LP+I LLE VE E AE+L + V ++++ GKK A VA R T RE
Sbjct: 173 VATASYRLLPDITLLEPVEGEAAEELSQCFSPGVIAVQEV-QGKKVARVANARLDTFSRE 231
Query: 327 CLRCGEEWEKRVSIRRVKDHFI 348
R E+ +K V + RV+DH+I
Sbjct: 232 IFR-HEKLKKAVRLARVRDHYI 252
>gi|335774431|gb|AEH58393.1| DNA-directed RNA polymerases I and III subuni RPAC1-like protein,
partial [Equus caballus]
Length = 267
Score = 225 bits (573), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 122/261 (46%), Positives = 171/261 (65%), Gaps = 18/261 (6%)
Query: 47 IHTENVMYSGAYASMGVDNSLQLDHFCNNFRVEVIRLTKDDMEFDLIGIDAAIANAFRRI 106
+HT + + G Y+ G D++ DHF NFRV+V+ + ++ +EFD++GIDAAIANAFRRI
Sbjct: 24 VHTTD--FPGNYS--GYDDAWDQDHFEKNFRVDVVHMDENSLEFDMVGIDAAIANAFRRI 79
Query: 107 LIAELPTMAIEKVLIANNTSVIQDEVLAHRLGLIPIIVDPRLFEYMSEND-TSNEKNTIV 165
L+AE+PTMA+EKVL+ NNTS++QDE+LAHRLGLIPI DPRLFEY ++ D E +T+
Sbjct: 80 LLAEVPTMAVEKVLVYNNTSIVQDEILAHRLGLIPIHADPRLFEYRNQGDEEGTEIDTLQ 139
Query: 166 FKLHVLCERGGPRLTVKTNELKWLPNGSELPLETKPDSNPSSKPRTYTSFSSSQDLLPEF 225
F+L V C R P +++ P E + ++ + + DL PE
Sbjct: 140 FRLQVRCTR-NPHAAKDSSD----------PSELYVNHKVYTRHMIWVPLGNQADLFPEG 188
Query: 226 SNNPIRPMLDITIARLGPGQEIELEAHAVKGIGKTHAKWSPVATAWYRMLPEIVLLEDVE 285
+ P+ DI IA+L PGQEI+L H VKGIGK HAK+SPVATA YR+LP+I LLE VE
Sbjct: 189 TIRPVHD--DILIAQLRPGQEIDLLMHCVKGIGKDHAKFSPVATASYRLLPDITLLEPVE 246
Query: 286 DEDAEKLVKTCPVNVFDIEDI 306
+ AE+L + V +++++
Sbjct: 247 GDAAEELSRCFSPGVIEVQEV 267
>gi|225707230|gb|ACO09461.1| DNA-directed RNA polymerase I 40 kDa polypeptide [Osmerus mordax]
Length = 351
Score = 224 bits (570), Expect = 7e-56, Method: Compositional matrix adjust.
Identities = 136/307 (44%), Positives = 184/307 (59%), Gaps = 24/307 (7%)
Query: 47 IHTENVMYSGAYASMGVDNSLQLDHFCNNFRVEVIRLTKDDMEFDLIGIDAAIANAFRRI 106
+HT + Y G Y G D++ + F NFR++++ + + MEFD++GIDAAIANAFRRI
Sbjct: 25 VHTTD--YPGNYP--GYDDAWNMQKFQKNFRIDIVEMDETTMEFDMVGIDAAIANAFRRI 80
Query: 107 LIAELPTMAIEKVLIANNTSVIQDEVLAHRLGLIPIIVDPRLFEYMS-----ENDTSNEK 161
++AE+PTMA+EKV I NNTS+IQDE+LAHRLGLIPI DPRLFEY + + E
Sbjct: 81 MLAEVPTMAVEKVYIYNNTSIIQDEILAHRLGLIPIKADPRLFEYRNIGEEGGEEEGTEI 140
Query: 162 NTIVFKLHVLCERGGPRLTVKTNELKWLPNGSELPLETKPDSNPSSKPRTYTSFSSSQDL 221
+TI +L + C R PR P S P E + SK + + D+
Sbjct: 141 DTIQLQLKIKCTR-NPR----------APKDSSDPRELYLNHMVYSKDMKWVPIGNQADV 189
Query: 222 LPEFSNNPIRPMLDITIARLGPGQEIELEAHAVKGIGKTHAKWSPVATAWYRMLPEIVLL 281
+ + P+ DI IA+L PGQE+++ VKGIGK HAK+SPVATA YR+LPEI L+
Sbjct: 190 FADANIGPVHG--DILIAQLRPGQELDVVMSCVKGIGKDHAKFSPVATASYRLLPEITLM 247
Query: 282 EDVEDEDAEKLVKTCPVNVFDIEDIGSGKKRATVAQPRACTLCRECLRCGEEWEKRVSIR 341
E VE E AE+L V ++E+ +GK A V R T RE LR ++ + V +
Sbjct: 248 ETVEGEKAERLKSCFSPGVIELENC-NGKVIAKVVNSRPDTCSREVLR-HDDLKNLVKLA 305
Query: 342 RVKDHFI 348
RV+DHFI
Sbjct: 306 RVRDHFI 312
>gi|19113623|ref|NP_596831.1| DNA-directed RNA polymerase I and III subunit Rpc40
[Schizosaccharomyces pombe 972h-]
gi|13124507|sp|O94616.1|RPAC1_SCHPO RecName: Full=DNA-directed RNA polymerases I and III subunit RPAC1;
Short=RNA polymerases I and III subunit AC1; AltName:
Full=DNA-directed RNA polymerases I and III 40 kDa
polypeptide; Short=AC40; AltName: Full=RPC39
gi|5531859|gb|AAD44503.1|AF082512_1 RNA polymerase subunit Rpc40 [Schizosaccharomyces pombe]
gi|4490662|emb|CAB38687.1| DNA-directed RNA polymerase I and III subunit Rpc40
[Schizosaccharomyces pombe]
gi|4760696|dbj|BAA77385.1| RPA42 [Schizosaccharomyces pombe]
Length = 348
Score = 223 bits (569), Expect = 8e-56, Method: Compositional matrix adjust.
Identities = 136/336 (40%), Positives = 189/336 (56%), Gaps = 49/336 (14%)
Query: 32 IEFQRTRVQCNLDAPIHTENVMYSGAYASMGVDNSLQLDHFCNNFRVEVIRLTKDDMEFD 91
++ RT + D +V + G Y DN LD F N +V + L ++ M F+
Sbjct: 4 VDRSRTEISVLSDRVTDVGSVDFPGYY--FDEDNIWDLDKFKKNLKVSITSLDQETMVFE 61
Query: 92 LIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRLGLIPIIVDPRLFEY 151
+ GIDA+IANAFRRILIAE+PT+A E V I NNTS+IQDEVL+HR+GL+PI DP +F++
Sbjct: 62 ISGIDASIANAFRRILIAEIPTLAFEFVYIINNTSIIQDEVLSHRIGLVPISADPDMFKW 121
Query: 152 M-----SENDTSNEKNTIVFKLHVLC---------ERGGPRLTVK----TNELKWLPNGS 193
+ T + +T+VF L+ C E+ RL V + +L W P G
Sbjct: 122 FQHPLPGQEATHTDYDTVVFSLNKKCEFNKNAATDEKDPKRLYVNSEVYSGDLIWKPQGR 181
Query: 194 ELPLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPM-LDITIARLGPGQEIELEAH 252
+ F++NPIR + DI +A+L PGQEI+LEAH
Sbjct: 182 Q---------------------------EERFADNPIRVVNPDIVVAKLRPGQEIDLEAH 214
Query: 253 AVKGIGKTHAKWSPVATAWYRMLPEIVLLEDVEDEDAEKLVKTCPVNVFDIEDIGSGKKR 312
A+ GIG+ HAK+SPVATA YR+LP I +L +E EDA K K P V ++E+ GKK+
Sbjct: 215 AILGIGQDHAKFSPVATASYRLLPTIHILSPIEGEDAVKFQKCFPKGVIELEEGPDGKKQ 274
Query: 313 ATVAQPRACTLCRECLRCGEEWEKRVSIRRVKDHFI 348
A VA R T+ RECLR E+ +V + RV+DH++
Sbjct: 275 ARVADVRKDTVSRECLR-HPEFADKVQLGRVRDHYL 309
>gi|1914859|emb|CAA71570.1| homologous to 40kD subunit of RNA-polymerase I and III [Cricetulus
griseus]
Length = 347
Score = 223 bits (569), Expect = 9e-56, Method: Compositional matrix adjust.
Identities = 136/332 (40%), Positives = 187/332 (56%), Gaps = 49/332 (14%)
Query: 36 RTRVQCNLDAPIHTENVMYSGAYASMGVDNSLQLDHFCNNFRVEVIRLTKDDMEFDLIGI 95
RT + D +V + G Y DN LD F N +V + L ++ M F++ GI
Sbjct: 7 RTEISVLSDRVTDVGSVDFPGYY--FDEDNIWDLDKFKKNLKVSITSLDQETMVFEISGI 64
Query: 96 DAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRLGLIPIIVDPRLFEYM--- 152
DA+IANAFRRILIAE+PT+A E V I NNTS+IQDEVL+HR+GL+PI DP +F++
Sbjct: 65 DASIANAFRRILIAEIPTLAFEFVYIINNTSIIQDEVLSHRIGLVPISADPDMFKWFQHP 124
Query: 153 --SENDTSNEKNTIVFKLHVLC---------ERGGPRLTVK----TNELKWLPNGSELPL 197
+ T + +T+VF L+ C E+ RL V + +L W P G +
Sbjct: 125 LPGQEATHTDYDTVVFSLNKKCEFNKNAATDEKDPKRLYVNSEVYSGDLIWKPQGRQ--- 181
Query: 198 ETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPM-LDITIARLGPGQEIELEAHAVKG 256
F++NPIR + DI +A+L PGQEI+LEAHA+ G
Sbjct: 182 ------------------------EERFADNPIRVVNPDIVVAKLRPGQEIDLEAHAILG 217
Query: 257 IGKTHAKWSPVATAWYRMLPEIVLLEDVEDEDAEKLVKTCPVNVFDIEDIGSGKKRATVA 316
IG+ HAK+SPVATA YR+LP I +L +E EDA K K P V ++E+ GKK+A VA
Sbjct: 218 IGQDHAKFSPVATASYRLLPTIHILSPIEGEDAVKFQKCFPKGVIELEEGPDGKKQARVA 277
Query: 317 QPRACTLCRECLRCGEEWEKRVSIRRVKDHFI 348
R T+ RECLR E+ +V + RV+DH++
Sbjct: 278 DVRKDTVSRECLR-HPEFADKVQLGRVRDHYL 308
>gi|298708063|emb|CBJ30416.1| conserved unknown protein [Ectocarpus siliculosus]
Length = 361
Score = 223 bits (568), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 131/276 (47%), Positives = 177/276 (64%), Gaps = 30/276 (10%)
Query: 86 DDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRLGLIPIIVD 145
+++ FDL+G+DA+IANA RRIL+AE+ T+AIE V + N+S+I DE+LAHRLGLIPI+ +
Sbjct: 56 NELVFDLVGVDASIANALRRILLAEVATVAIEHVYMFMNSSIIHDEILAHRLGLIPIMAN 115
Query: 146 PRLFEYMSE----NDTSNEKNTIVFKLHVLCERGGPRLTVKTNELKWLPNGSELPLETKP 201
PR+FE++ E D E NT VFKL E+K + +++P
Sbjct: 116 PRMFEFVGEEGGEQDEPTEFNTCVFKL----------------EVKNPADPADMPDPMPT 159
Query: 202 DSNPSSKPR-TYTSFSSSQDLLPEF-------SNNPIRPMLD-ITIARLGPGQEIELEAH 252
++ ++ PR T FS + + P +RP+ D I IA+L PGQEI E H
Sbjct: 160 GTSYAAGPRRTMNVFSGAMEWCPHGDQVERFEGEGGLRPVHDDILIAKLRPGQEIVAEMH 219
Query: 253 AVKGIGKTHAKWSPVATAWYRMLPEIVLLEDVEDEDAEKLVKTCPVNVFDIEDIGSGKKR 312
KGIGK HAK+SPVATA YR+LP + L E+VE ++AE+LV CP+NVFDIED+G KR
Sbjct: 220 CRKGIGKDHAKFSPVATASYRLLPVVTLKEEVEGQEAEELVAKCPLNVFDIEDLGGAGKR 279
Query: 313 ATVAQPRACTLCRECLRCGEEWEKRVSIRRVKDHFI 348
A VA+PR CT+CREC+R W +VS+ RV DHFI
Sbjct: 280 AKVARPRDCTMCRECIR-EPGWSDKVSLSRVADHFI 314
>gi|196010261|ref|XP_002114995.1| hypothetical protein TRIADDRAFT_59063 [Trichoplax adhaerens]
gi|190582378|gb|EDV22451.1| hypothetical protein TRIADDRAFT_59063 [Trichoplax adhaerens]
Length = 349
Score = 223 bits (567), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 134/317 (42%), Positives = 190/317 (59%), Gaps = 22/317 (6%)
Query: 36 RTRVQCNLDAPIHTENVMYSGAYASMGVDNSLQLDHFCNNFRVEVIRLTKDDMEFDLIGI 95
RTRVQ +T V + GA+ G D++ L+ F NF++E+I++ ++MEFD+IGI
Sbjct: 9 RTRVQLEEYQVKNTHTVDFPGAF--HGYDDAWSLNSFRKNFKIEIIKVDNEEMEFDMIGI 66
Query: 96 DAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRLGLIPIIVDPRLFEYMSEN 155
DA+IANA+RRI+++E+P MAIEKV+I NNTS+IQDEVLAHRLGLIPI DP+LF+ +
Sbjct: 67 DASIANAYRRIMLSEVPAMAIEKVVIHNNTSIIQDEVLAHRLGLIPIAADPKLFDNFNPG 126
Query: 156 DTSNEKNTIVFKLHVLCERGGPRLTVKTNELKWLPNGSELPLETKPDSNPSSKPRTYTSF 215
DT KN+I F L + C R + T+ P E +S ++K
Sbjct: 127 DTPTNKNSITFTLQIKCIRNRSAHSDATD-----------PEELYINSKVTTKDLKLKYN 175
Query: 216 SSSQDLLPEFSNNPIRPML-DITIARLGPGQEIELEAHAVKGIGKTHAKWSPVATAWYR- 273
+ +P N IRP+ DI IA+L PGQEI+LE VKG G HAK+SPV Y
Sbjct: 176 EDQDNAIP---NKDIRPVHEDILIAKLRPGQEIDLEMICVKGTGADHAKFSPVGNNLYLL 232
Query: 274 --MLPEIVLLEDVEDEDAEKLVKTCPVNVFDIEDIGSGKKRATVAQPRACTLCRECLRCG 331
++PEI+L + V + A++L K P V I++I G K A + +PR T R+ LR
Sbjct: 233 VWLMPEIILKQAVTGKRAKRLAKCFPEGVIGIKEI-KGIKTAYIDKPRLDTCSRQVLR-D 290
Query: 332 EEWEKRVSIRRVKDHFI 348
E ++ V + +++DHFI
Sbjct: 291 PELKEHVILNKIRDHFI 307
>gi|328766566|gb|EGF76620.1| hypothetical protein BATDEDRAFT_21078 [Batrachochytrium
dendrobatidis JAM81]
Length = 342
Score = 223 bits (567), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 138/315 (43%), Positives = 180/315 (57%), Gaps = 20/315 (6%)
Query: 36 RTRVQCNLDAPIHTENVMYSGAYASMGVDNSLQLDHFCNNFRVEVIRLTKDDMEFDLIGI 95
RTRV D + + + + G+D S L+ F F + + + KD MEFDLIG+
Sbjct: 2 RTRVVLTEDFVANVSGMDFPHTFP--GIDLSWNLEKFKEKFNIVIDYIGKDSMEFDLIGL 59
Query: 96 DAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRLGLIPIIVDPRLFEYM-SE 154
DA+I+NAFRRILI E+ TMAIE V I NNT V+ DEVLA RLGLIPI DPRLF++
Sbjct: 60 DASISNAFRRILIGEVATMAIENVYIMNNTGVMHDEVLAQRLGLIPINSDPRLFDFREGS 119
Query: 155 NDTSNEKNTIVFKLHVLCERGGPRLTVKTNELKWLPNGSELPLETKPDSNPSSKPRTYTS 214
+D + NT+VF+L++ C R + N P DS+ SK +
Sbjct: 120 DDPPTDLNTLVFRLNIKCTRNPHASASEIN-----------PSNKYIDSDVLSK---HLI 165
Query: 215 FSSSQDLLPEFSNNPIRPML-DITIARLGPGQEIELEAHAVKGIGKTHAKWSPVATAWYR 273
+ D + +F ++PIRP DI I +L PGQEIE E H KGIGK HAKWSPVATA YR
Sbjct: 166 WEPQGDQVEKFKDSPIRPYYDDILITKLRPGQEIEAELHCQKGIGKEHAKWSPVATASYR 225
Query: 274 MLPEIVLLEDVEDEDAEKLVKTCPVNVFDIEDIGSGKKRATVAQPRACTLCRECLRCGEE 333
+LP+I +L+ + +DAEK P I +G A +A PR T RE LR E
Sbjct: 226 LLPDIQILKPITGKDAEKFKNCFPEGTVKIVQ-KNGVGHAEIANPRKDTASREVLRHAEF 284
Query: 334 WEKRVSIRRVKDHFI 348
+K V + RV+DHFI
Sbjct: 285 LDK-VRLTRVRDHFI 298
>gi|449541898|gb|EMD32879.1| hypothetical protein CERSUDRAFT_160889 [Ceriporiopsis subvermispora
B]
Length = 364
Score = 222 bits (566), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 136/326 (41%), Positives = 190/326 (58%), Gaps = 45/326 (13%)
Query: 36 RTRVQCNLDAPIHTENVMYSGAYASMGVDNSLQLDHFCNNFRVEVIRLTKDDMEFDLIGI 95
R V NL+ + N Y G Y D+S L F N ++ V RL++ +EFDL+G+
Sbjct: 16 RRHVGVNLERVTNVTNTEYPGHYPDE--DHSWDLAKFKQNLQLSVKRLSQRSIEFDLVGV 73
Query: 96 DAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRLGLIPIIVDPRLFEYMSEN 155
DA+IANAFRRILIAE+PTMAIE V + NNTSVIQDEVLA RLGLIP+ VDPR+FE+ ++
Sbjct: 74 DASIANAFRRILIAEVPTMAIEHVYVWNNTSVIQDEVLAQRLGLIPLDVDPRMFEFRTQT 133
Query: 156 DTSNEKNTIVFKLHVLCER--GGPRLT--------VKTNELKWLPNG-SELPLETKPDSN 204
DT ++NT+VF+L+V CER PR + V++ +L+W+P G E+ KP +
Sbjct: 134 DTPTDRNTLVFQLNVTCERMKNAPRGSTSQHKHEYVRSEDLEWVPQGEQEVVFADKPPA- 192
Query: 205 PSSKPRTYTSFSSSQDLLPEFSNNPIRPMLDITIARLGPGQEIELEAHAVKGIGKTHAKW 264
P++K +I +A+L PGQEI +E HA+KG+GK HAKW
Sbjct: 193 PTNK--------------------------EIVLAKLAPGQEINVELHAIKGVGKEHAKW 226
Query: 265 SPVATAWYRMLPEIVL--LEDVEDEDAEKLVKTCPVNVFDIEDIGSGKKRATVAQPRACT 322
+PVATA YR+ P ++L + + A+K K V +E GK R +
Sbjct: 227 NPVATASYRLHPLVLLNPSKPIPPHLADKFAKCFSPGVVRVE--SGGKVSIDERNLRKES 284
Query: 323 LCRECLRCGEEWEKRVSIRRVKDHFI 348
+ RE LR E+E V ++R++D FI
Sbjct: 285 MSREVLR-HPEFEGCVELKRIRDWFI 309
>gi|384488271|gb|EIE80451.1| hypothetical protein RO3G_05156 [Rhizopus delemar RA 99-880]
Length = 247
Score = 222 bits (566), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 126/269 (46%), Positives = 165/269 (61%), Gaps = 42/269 (15%)
Query: 27 KLPPHIEFQRTRVQCNLDAPIHTENVMYSGAYASMGVDNSLQLDHFCNNFRVEVIRLTKD 86
KLP ++E RTRV D P + +D L+ F N +V++ RL+K
Sbjct: 5 KLPENVELLRTRVASGSDYP-----------HQYPRIDKGFNLEEFKKNLKVKIQRLSKH 53
Query: 87 DMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRLGLIPIIVDP 146
+EFDLIG+DA+IANAFRRI+IAE+PTMAIEKV + NNTS+IQDEV+AHRLGLIPI+ DP
Sbjct: 54 SVEFDLIGVDASIANAFRRIMIAEVPTMAIEKVYVMNNTSIIQDEVVAHRLGLIPILADP 113
Query: 147 RLFEYMSENDTSNEKNTIVFKLHVLCERGGPRLTVKTNELKWLPNGSELPLETKPDSNPS 206
F+YM+E+ + NT+VF+L CE + P S P ET P
Sbjct: 114 NEFDYMAEDGGPTDLNTLVFRLKKKCE--------------FNPEAS--PDETDPHK--- 154
Query: 207 SKPRTYTSFSSSQDLLPE--------FSNNPIRPML-DITIARLGPGQEIELEAHAVKGI 257
+ S+ S+DL+ E F+ NP RP+ DI IA+L PGQE+E+E H KG+
Sbjct: 155 ---KYINSYVYSKDLIWEPKGNQEEKFAANPPRPVHDDIVIAKLRPGQEMEMELHCQKGV 211
Query: 258 GKTHAKWSPVATAWYRMLPEIVLLEDVED 286
G+ HAKWSPVATA YR+LPEI +LE + D
Sbjct: 212 GREHAKWSPVATASYRLLPEITILEPITD 240
>gi|393234912|gb|EJD42471.1| hypothetical protein AURDEDRAFT_115078 [Auricularia delicata
TFB-10046 SS5]
Length = 355
Score = 222 bits (566), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 131/317 (41%), Positives = 183/317 (57%), Gaps = 20/317 (6%)
Query: 35 QRTRVQCNLDAPIHTENVMYSGAYASMGVDNSLQLDHFCNNFRVEVIRLTKDDMEFDLIG 94
+R +V+ + N + G Y G D++ + F + +VE+ RL+ +EFDL+G
Sbjct: 9 KRRQVKVGTERAYDVANTEFPGNYP--GEDHAWNIKKFRKDLKVEIQRLSHRSIEFDLVG 66
Query: 95 IDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRLGLIPIIVDPRLFEYMSE 154
+DA+IANAFRRILIAE+PT+AIE + NNTSVI DEVLA RLGL+P+ +DP L E+
Sbjct: 67 VDASIANAFRRILIAEVPTVAIEHAYVWNNTSVIHDEVLAQRLGLVPLDIDPALMEF--H 124
Query: 155 NDTSNEKNTIVFKLHVLCERGGPRLTVKTNELKWLPNGSELPLETKPDSNPSSKPRTYTS 214
S ++NT+VF+L V CER R +E P + DSN SK T+
Sbjct: 125 EGVSTDRNTLVFRLQVTCER---RKGAHKDETD--------PEKLYKDSNVYSKHLTWVP 173
Query: 215 FSSSQDLLPEFSNNPIRPM-LDITIARLGPGQEIELEAHAVKGIGKTHAKWSPVATAWYR 273
F+++P RP +I +A+L PGQEIE+E HA+KG G HAKWSPV TA YR
Sbjct: 174 QGEQATF---FADHPPRPCNENILLAKLRPGQEIEVELHAIKGRGNEHAKWSPVGTASYR 230
Query: 274 MLPEIVLLEDVEDEDAEKLVKTCPVNVFDIEDIGSGKKRATVAQPRACTLCRECLRCGEE 333
+LP I + + + +K P V ++ G+K A VA PR T+ RE LR E
Sbjct: 231 LLPHITIHKPIPSHLVDKFAGCFPPGVIGVKTNARGEKEAIVADPRRDTVSREVLRH-PE 289
Query: 334 WEKRVSIRRVKDHFICK 350
+E VS+ R++D F+ K
Sbjct: 290 FEGMVSLSRIRDFFLFK 306
>gi|294891094|ref|XP_002773417.1| DNA-directed RNA polymerases I and III 40 kDa polypeptide, putative
[Perkinsus marinus ATCC 50983]
gi|239878570|gb|EER05233.1| DNA-directed RNA polymerases I and III 40 kDa polypeptide, putative
[Perkinsus marinus ATCC 50983]
Length = 365
Score = 221 bits (563), Expect = 5e-55, Method: Compositional matrix adjust.
Identities = 128/336 (38%), Positives = 188/336 (55%), Gaps = 42/336 (12%)
Query: 24 VPQKLPPHIEFQRTRVQCNLDAPIHTENVMYSGAYASMGVDNSLQLDHFCNNFRVEVIRL 83
VP I+ + R++ L+ P + + SG YASMG+DNS + F +++V R
Sbjct: 2 VPPPTKESIKQKHRRMELTLEGPSNPQTADDSGVYASMGIDNSYDREEFQRRLKMKVQRA 61
Query: 84 TKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRLGLIPII 143
+ + +E D++GID IANA RRI+IAE+PT+AIEK + NT VI DE+LAHRLGL+PI
Sbjct: 62 SDEVVEVDVVGIDPPIANALRRIMIAEIPTIAIEKCYVYQNTGVIHDEILAHRLGLVPIY 121
Query: 144 VDPRLFEYMSE-------NDTSNEKNTIVFKLHVLCERGGP---RLTVKTNELKWLPNGS 193
D + E +D ++ I F L +C + P + V + +LKW+P
Sbjct: 122 CDIDSLKMRDEDAPPEQRDDVTDPDTWICFSLEKVCPQSHPPRESMPVYSGDLKWVP--- 178
Query: 194 ELPLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPML-DITIARLGPGQEIELEAH 252
++ Q+ + ++P RP+ D+ I +L GQE+E++
Sbjct: 179 ---------------------LNAEQE--ERYKDDPPRPVYDDVLITKLRCGQELEIKCF 215
Query: 253 AVKGIGKTHAKWSPVATAWYRMLPEIVLLEDVEDEDAEKLVKTCPVNVFDIEDIGSGKKR 312
KGIGK HAKWSPV TA YR++P+I+L E +E +A+K CP+ VFDIED
Sbjct: 216 CCKGIGKIHAKWSPVCTATYRLMPDIILKEPIEGAEAKKFKLVCPMGVFDIEDGA----- 270
Query: 313 ATVAQPRACTLCRECLRCGEEWEKRVSIRRVKDHFI 348
A V PRACT CR+C+ G + +VS+ ++KDHFI
Sbjct: 271 AVVKNPRACTTCRQCIEPGNGFADKVSLGKLKDHFI 306
>gi|198427484|ref|XP_002120101.1| PREDICTED: similar to RNA polymerase 1-1 [Ciona intestinalis]
Length = 345
Score = 219 bits (559), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 130/328 (39%), Positives = 190/328 (57%), Gaps = 48/328 (14%)
Query: 36 RTRVQCNLDAPIHTENVMYSGAYASMGVDNSLQLDHFCNNFRVEVIRLTKDDMEFDLIGI 95
R+ ++ N +T Y +YA G +++ F +NF + VI L D M+FD++G+
Sbjct: 8 RSNIRLNEHGIANTHTTTYPRSYA--GFNDAWDFQKFADNFCINVIELGPDSMQFDMLGV 65
Query: 96 DAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRLGLIPIIVDPRLFEYMSEN 155
DAAIANAFRRILIAE+PTMAIEKV I NNT+VIQDEVLAHRLGLIP+ D +LFEY +
Sbjct: 66 DAAIANAFRRILIAEVPTMAIEKVYIYNNTTVIQDEVLAHRLGLIPLTADAKLFEYRQGD 125
Query: 156 DTSNE-KNTIVFKLHVLCER--GGPRLT-----------VKTNELKWLPNGSELPLETKP 201
D ++T+ F+L++ C + P+ T V + ++KW+P G++
Sbjct: 126 DADGTPEDTLEFELNIKCTKNLSAPKDTTDLDVLYKHHKVYSKDIKWIPLGNQ------- 178
Query: 202 DSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPMLD-ITIARLGPGQEIELEAHAVKGIGKT 260
+DLL ++P+ D I +A+L PG ++++ HAVKG+G+
Sbjct: 179 -----------------KDLLT------VKPVYDDILVAKLRPGHILDVKLHAVKGVGQD 215
Query: 261 HAKWSPVATAWYRMLPEIVLLEDVEDEDAEKLVKTCPVNVFDIEDIGSGKKRATVAQPRA 320
HAK+SPVATA YR+LP+I LL+ + + DAE L + V ++ +G + A V R
Sbjct: 216 HAKFSPVATASYRLLPQIRLLDQILNSDAEDLQRCFAPGVIEVYRNKNGDQEARVVDARK 275
Query: 321 CTLCRECLRCGEEWEKRVSIRRVKDHFI 348
T RE LR + RV + +V+DHFI
Sbjct: 276 DTCSREVLR-HPHLKDRVELSKVRDHFI 302
>gi|213403846|ref|XP_002172695.1| DNA-directed RNA polymerases I and III subunit RPAC1
[Schizosaccharomyces japonicus yFS275]
gi|212000742|gb|EEB06402.1| DNA-directed RNA polymerases I and III subunit RPAC1
[Schizosaccharomyces japonicus yFS275]
Length = 349
Score = 219 bits (557), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 133/325 (40%), Positives = 187/325 (57%), Gaps = 27/325 (8%)
Query: 32 IEFQRTRVQCNLDAPIHTENVMYSGAYASMGVDNSLQLDHFCNNFRVEVIRLTKDDMEFD 91
++ RT V D + + G Y DNS L+ F +++ L +M FD
Sbjct: 4 VDRSRTEVGIQADRVTDVGSTDFPGYY--FDEDNSWNLEEFKKKLNIKITSLDDLNMTFD 61
Query: 92 LIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRLGLIPIIVDPRLFEY 151
+ GIDA+I NAFRRILIAE+PT+AIE V I NNTS++QDEVL+HRLGLIP+ DP +F++
Sbjct: 62 ISGIDASIVNAFRRILIAEIPTLAIEFVYIINNTSILQDEVLSHRLGLIPLKADPDMFKW 121
Query: 152 M-----SENDTSNEKNTIVFKLHVLCERGGPRLTVKTNELKWLPNGSELPLET--KPDSN 204
T + +T+VF L+V C+ +T+ K N L E KP
Sbjct: 122 FVRPGPGMEATHTDYDTVVFSLNVKCDFNKEAAPGETDPKKLYLNSEVLSGELVWKPQGR 181
Query: 205 PSSKPRTYTSFSSSQDLLPEFSNNPIRPM-LDITIARLGPGQEIELEAHAVKGIGKTHAK 263
+ + F++NP+ + +I +A+L PGQEI+LEAHA+ GIG+ HAK
Sbjct: 182 QAER----------------FADNPLTVVNPNIVVAKLRPGQEIDLEAHAILGIGQDHAK 225
Query: 264 WSPVATAWYRMLPEIVLLEDVEDEDAEKLVKTCPVNVFDIEDIGSGKKRATVAQPRACTL 323
+SPV+TA YR+LP I +LE +E EDA K K P V ++ED +GK RA VA R T+
Sbjct: 226 FSPVSTASYRLLPAIHILEPIEGEDAIKFQKCFPAGVIELEDGPNGKPRARVADVRKDTV 285
Query: 324 CRECLRCGEEWEKRVSIRRVKDHFI 348
RECLR E+ +V + RV+D+F+
Sbjct: 286 SRECLRH-PEFADKVQLGRVRDYFL 309
>gi|325187132|emb|CCA21673.1| DNAdirected RNA polymerase I and III subunit RPAC1 p [Albugo
laibachii Nc14]
Length = 343
Score = 219 bits (557), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 131/294 (44%), Positives = 175/294 (59%), Gaps = 46/294 (15%)
Query: 69 LDHFCNNFRVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVI 128
L ++++ L +MEFDLIG+D +IANA RRIL++E+PTMAIE V I NN+S+I
Sbjct: 34 LTTLTQQIQIQIKHLDDQEMEFDLIGVDPSIANALRRILLSEVPTMAIEHVYIWNNSSII 93
Query: 129 QDEVLAHRLGLIPIIVDPRLFEYM--SENDTSNEKNTIVFKLHVLCERGGP--------- 177
QDEVLAHRLGLIP++VDPR F++ E + ++NTIVFKL V C R P
Sbjct: 94 QDEVLAHRLGLIPLLVDPREFQHFPEDEEAEATDENTIVFKLDVTC-RSDPNEPENSSKA 152
Query: 178 -RLTVKTNELKWLPNGSELPLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPML-D 235
+V + +L+W+P G++ +TS IRP+ D
Sbjct: 153 SHSSVYSRDLEWVPQGNQ--------------EERFTS---------------IRPVSED 183
Query: 236 ITIARLGPGQEIELEAHAVKGIGKTHAKWSPVATAWYRMLPEIVLLEDVEDEDAEKLVKT 295
I IA+L PGQ I LEAH KGIG+ HAK+SPV+TA YR+LP I E V E+A +L +
Sbjct: 184 ILIAKLRPGQSIALEAHCRKGIGRDHAKFSPVSTASYRLLPRIEFTEPVVGEEALELAQN 243
Query: 296 -CPVNVFDIEDIGSGKKRATVAQPRACTLCRECLRCGEEWEKRVSIRRVKDHFI 348
C VFDIEDI +G A V+ R CT+CREC+R W+ ++ + R DHFI
Sbjct: 244 KCVSKVFDIEDI-AGLPTAIVSDSRKCTMCRECIR-APGWDSKIQLGRQHDHFI 295
>gi|412991198|emb|CCO16043.1| DNA-directed RNA polymerases I and III subunit RPAC1 [Bathycoccus
prasinos]
Length = 438
Score = 218 bits (555), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 139/379 (36%), Positives = 203/379 (53%), Gaps = 58/379 (15%)
Query: 26 QKLPPHIEFQRTRVQCNLDAPIHTENVMYSGAYASMGV-----DNSLQLDHFCNNFRVEV 80
+K+ H+E Q+ V HT+ Y AY+ +++ L+ F NF ++V
Sbjct: 28 EKIASHLEMQKKFVSVGFAENKHTQERAYFNAYSGGAAATEEDEDAFSLEQFRKNFTIKV 87
Query: 81 IR--LTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRLG 138
+ +EF++ GI AA ANAFRRI+I+E+P+MAIE+V NTSVI DE+ AHRLG
Sbjct: 88 TENNESTHTLEFEMEGISAAFANAFRRIIISEVPSMAIERVYFRQNTSVIADEIFAHRLG 147
Query: 139 LIPIIVDPRLFEYMSEN---DTSNEKNTIVFKLHVLCER----GGPRL-------TVKTN 184
L+PI+ DP FE ++ D NEKNTIVFKLHV C++ G L V +
Sbjct: 148 LVPILADPNEFESFDKDTHTDLLNEKNTIVFKLHVKCQKERDASGNILPDSILHEKVYSR 207
Query: 185 ELKWLPNGSELPLETKPDSNP---------------------------SSKPRTYTSFSS 217
+L WLP GSEL E++ K +T+++FS+
Sbjct: 208 DLVWLPKGSELEDESQGGEGADDDDDDDDDDDEDDDDMSDDDEKKKRKKKKIKTFSNFST 267
Query: 218 SQDLLPEFSNNPIRPML-DITIARLGPGQEIELEAHAVKGIGKTHAKWSPVATAWYRMLP 276
SQ+ +F I+ + DI +A+L PGQEIELEAH +K IG HAK+SPV T WYR++P
Sbjct: 268 SQE--TKFGKEGIKTVHDDILLAKLVPGQEIELEAHCMKSIGADHAKFSPVGTCWYRLVP 325
Query: 277 EIVLLEDVEDEDAEKLVKTC--PV-NVFDIEDIGSGKK-RATVAQPRACTLCRECLR--C 330
+ + + DA+ + C P+ N E GSG+K + R C LC E +R
Sbjct: 326 TVYFKKPIVGADAKVFMSECSDPIPNHKCFELKGSGEKAEVKIKSIRGCDLCLERIRELS 385
Query: 331 GEE-WEKRVSIRRVKDHFI 348
GE W+ ++++ + +DH+I
Sbjct: 386 GESGWDSKIAVLKKRDHYI 404
>gi|344253232|gb|EGW09336.1| DNA-directed RNA polymerases I and III subunit RPAC1 [Cricetulus
griseus]
Length = 282
Score = 217 bits (553), Expect = 5e-54, Method: Compositional matrix adjust.
Identities = 124/261 (47%), Positives = 166/261 (63%), Gaps = 22/261 (8%)
Query: 92 LIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRLGLIPIIVDPRLFEY 151
++GIDAAIANAFRRIL+AE+PTMA+EKVL+ NNTS++QDE+LAHRLGLIPI+ DPRLFEY
Sbjct: 1 MVGIDAAIANAFRRILLAEVPTMAVEKVLVYNNTSIVQDEILAHRLGLIPILADPRLFEY 60
Query: 152 MSEN-DTSNEKNTIVFKLHVLCERGGPRLTVKTNELKWLPNG---SELPLETKPDSNPSS 207
+ + E +T+ F+L V C + PN S P E + +
Sbjct: 61 RNPGEEEGTEIDTLQFRLQVRCTKN--------------PNAAKDSSDPNELYVNHKVYT 106
Query: 208 KPRTYTSFSSSQDLLPEFSNNPIRPMLDITIARLGPGQEIELEAHAVKGIGKTHAKWSPV 267
+ T+ + D+ PE + P+ DI IA+L PGQEI+L H VKGIGK HAK+SPV
Sbjct: 107 RHMTWVPLGNQADVFPEGTIRPVHD--DILIAQLRPGQEIDLVMHCVKGIGKDHAKFSPV 164
Query: 268 ATAWYRMLPEIVLLEDVEDEDAEKLVKTCPVNVFDIEDIGSGKKRATVAQPRACTLCREC 327
ATA YR+LP+I LLE VE E AE+L + V +++++ G+K A VA R T RE
Sbjct: 165 ATASYRLLPDITLLEPVEGEAAEELSRCFSPGVIEVQEV-QGQKLARVANARLDTFSREI 223
Query: 328 LRCGEEWEKRVSIRRVKDHFI 348
R E+ +K V + RV+DH+I
Sbjct: 224 FR-NEKLKKAVRLARVRDHYI 243
>gi|395324899|gb|EJF57331.1| insert subdomain of RNA polymerase alpha subunit [Dichomitus
squalens LYAD-421 SS1]
Length = 370
Score = 216 bits (551), Expect = 9e-54, Method: Compositional matrix adjust.
Identities = 135/319 (42%), Positives = 184/319 (57%), Gaps = 46/319 (14%)
Query: 47 IHTENVM------YSGAYASMGVDNSLQLDHFCNNFRVEVIRLTKDDMEFDLIGIDAAIA 100
+H E V + G Y G D+S L F N +V V RL++ +EFDL+G+DAAIA
Sbjct: 22 VHAERVSDVSSTEFPGHYP--GEDHSWNLAKFKQNLKVSVKRLSQRSVEFDLVGVDAAIA 79
Query: 101 NAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRLGLIPIIVDPRLFEYMSENDTSNE 160
NAFRRILIAE+PT+AIE V + NNTSVI DE+LA R+GLIP+ VDPRLF++ +
Sbjct: 80 NAFRRILIAEVPTIAIEDVFVFNNTSVIHDEILAQRIGLIPLNVDPRLFDFRPPGGIPMD 139
Query: 161 KNTIVFKLHVLCERG-----GPRLT--VKTNELKWLPNGSELPLETKPDSNPSSKPRTYT 213
+NT+VFKL+V CER P + VK+ +L W P G + T
Sbjct: 140 RNTLVFKLNVTCERAKKGSSSPYINEYVKSGDLVWEPQGEQA-----------------T 182
Query: 214 SFSSSQDLLPEFSNNPIRPMLDITIARLGPGQEIELEAHAVKGIGKTHAKWSPVATAWYR 273
F+S P + NP DI +A+L PGQ IE+E HA+KG+GK HAKWSPVATA YR
Sbjct: 183 VFASR----PPAATNP-----DIVLAKLRPGQVIEMELHAIKGVGKEHAKWSPVATATYR 233
Query: 274 MLPEIVL--LEDVEDEDAEKLVKTCPVNVFDIEDIGSGKKRATVAQPRACTLCRECLRCG 331
+ P ++L + V E A+K K V ++ +G+ R T+ RE LR
Sbjct: 234 LHPLVLLNPSKPVPPEHAQKFAKCFSPGVVEVS--AAGEVAINERYLRTETMSREALRH- 290
Query: 332 EEWEKRVSIRRVKDHFICK 350
+E+E V ++R++D FI +
Sbjct: 291 KEFEGCVELKRIRDWFIFQ 309
>gi|403419367|emb|CCM06067.1| predicted protein [Fibroporia radiculosa]
Length = 377
Score = 216 bits (550), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 135/336 (40%), Positives = 186/336 (55%), Gaps = 47/336 (13%)
Query: 27 KLPPHIEFQRTRVQCNLDAPIHTENVMYSGAYASMGVDNSLQLDHFCNNFRVEVIRLTKD 86
+LPP + R V + + N Y G Y G D+S L HF N +V V RL++
Sbjct: 13 QLPPSVFNPRRHVNVHAERVSDVSNTEYPGHYP--GEDHSWNLAHFKQNLKVSVKRLSQR 70
Query: 87 DMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRLGLIPIIVDP 146
+EFDLIG+DA+IANAFRRI+IAE+P++AIE V + NNTSVI DEVLAHRLGL+P+ VDP
Sbjct: 71 SVEFDLIGVDASIANAFRRIMIAEVPSLAIENVYVWNNTSVIHDEVLAHRLGLVPLNVDP 130
Query: 147 RLFEYMSENDTSNEKNTIVFKLHVLC--------ERGGPRL----TVKTNELKWLPNGSE 194
LF+Y D ++NT+VF+L+V C E+G R VK+ +L+W+P G +
Sbjct: 131 SLFDY--REDVPTDRNTLVFRLNVACEVDKSASKEKGASRKFLHELVKSGDLEWIPQGEQ 188
Query: 195 LPLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPMLDITIARLGPGQEIELEAHAV 254
+ P++K +I +A+L PGQEIE+E HA+
Sbjct: 189 AAVFAGCTPAPTNK--------------------------EIVLAKLRPGQEIEMELHAI 222
Query: 255 KGIGKTHAKWSPVATAWYRMLPEIVL--LEDVEDEDAEKLVKTCPVNVFDIEDIGSGKKR 312
K +GK HAKWSPVATA YR+ P IVL + V EK V I+ G+
Sbjct: 223 KNVGKVHAKWSPVATASYRLHPLIVLNPSKPVPPHLGEKFAACFSPGVVQIDR--DGQIS 280
Query: 313 ATVAQPRACTLCRECLRCGEEWEKRVSIRRVKDHFI 348
R ++ RE LR +E+E V ++R++D FI
Sbjct: 281 IHEHNMRKESMSREVLR-HKEFEGCVELKRIRDWFI 315
>gi|449662625|ref|XP_002166070.2| PREDICTED: DNA-directed RNA polymerases I and III subunit
RPAC1-like [Hydra magnipapillata]
Length = 354
Score = 214 bits (546), Expect = 4e-53, Method: Compositional matrix adjust.
Identities = 144/345 (41%), Positives = 193/345 (55%), Gaps = 61/345 (17%)
Query: 32 IEFQRTRVQCNLDAPIHTENVMYSGAYASMGVDNSLQLDHFCNNFRVEVIRLTKDDMEFD 91
IE R +V+ A I+T + G+Y G D+S F F+++VI+L +++MEFD
Sbjct: 5 IEDIRNKVKLEEFAVINTAGSAFPGSYT--GYDDSWNFKKFKKKFKIDVIKLNQNEMEFD 62
Query: 92 LIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRLGLIPIIVDPRLFEY 151
+IGIDA+IANAFRRILIAE+PTMAIEKV I NNT+++QDE+LAHRLGLIPI+ DPR F +
Sbjct: 63 MIGIDASIANAFRRILIAEVPTMAIEKVFIFNNTTIVQDEILAHRLGLIPILADPREFNF 122
Query: 152 ------------MSENDTSNEKNTIVFKLHVLCERGGPRLT--------------VKTNE 185
E +E + +VF+L + C + P+ + V T
Sbjct: 123 PPAKLEDESKLTDEERLAVDEHHHLVFELKIKCSK-NPKASSDATDPDVLYLNNKVMTKH 181
Query: 186 LKWLPNGSELPLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPML-DITIARLGPG 244
+KW+P G + +FS N +RP+ DI IA+L PG
Sbjct: 182 MKWIPIGRQ---------------------------AEKFSTNIVRPVFDDILIAKLRPG 214
Query: 245 QEIELEAHAVKGIGKTHAKWSPVATAWYRMLPEIVLLEDVEDEDAEKLVKTCPVNV-FDI 303
QE+++ H VKGIGK HAK+SPVATA YR+L EI LL V E AE L K V DI
Sbjct: 215 QELDIRMHCVKGIGKDHAKFSPVATASYRLLREITLLTPVVGELAETLAKCFFKGVKKDI 274
Query: 304 EDIGSGKKRATVAQPRACTLCRECLRCGEEWEKRVSIRRVKDHFI 348
E+ +G RA V PR + RE R E +K V + +V+DHFI
Sbjct: 275 EE--NGITRAVVDNPRKDSGMREIYR-NEILKKIVKLEKVRDHFI 316
>gi|118088012|ref|XP_001234462.1| PREDICTED: DNA-directed RNA polymerases I and III subunit RPAC1
isoform 1 [Gallus gallus]
Length = 300
Score = 214 bits (544), Expect = 7e-53, Method: Compositional matrix adjust.
Identities = 132/302 (43%), Positives = 170/302 (56%), Gaps = 58/302 (19%)
Query: 47 IHTENVMYSGAYASMGVDNSLQLDHFCNNFRVEVIRLTKDDMEFDLIGIDAAIANAFRRI 106
+HT + + G Y G D++ F FRV+V+R +EFD++GIDAAIANAFRRI
Sbjct: 18 VHTTD--FPGNYP--GYDDAWDQRRFEEAFRVDVVREEDGVLEFDMVGIDAAIANAFRRI 73
Query: 107 LIAELPTMAIEKVLIANNTSVIQDEVLAHRLGLIPIIVDPRLFEYMSENDTSNEKNTIVF 166
L+AE+PTMA+EKV + NNTS++QDE+LAHRLGLIPI DPRLFEY
Sbjct: 74 LLAEVPTMAVEKVFVYNNTSIVQDEILAHRLGLIPIRADPRLFEY--------------- 118
Query: 167 KLHVLCERGGPRLTVKTNELKWLPNGSELPLETKPDSNPSSKPRTYTSFSSSQDLLPEFS 226
R V + + W+P G++ DL P+
Sbjct: 119 -----------RNQVYSKHMTWVPLGNQ------------------------TDLFPDAD 143
Query: 227 NNPIRPMLDITIARLGPGQEIELEAHAVKGIGKTHAKWSPVATAWYRMLPEIVLLEDVED 286
P+ DI IA L PGQEI++ H VKGIGK HAK+SPVATA YR+LP+I LL+ VED
Sbjct: 144 FRPVHD--DILIALLRPGQEIDVLMHCVKGIGKDHAKFSPVATASYRLLPDITLLQPVED 201
Query: 287 EDAEKLVKTCPVNVFDIEDIGSGKKRATVAQPRACTLCRECLRCGEEWEKRVSIRRVKDH 346
E AE L K V +I++I GKK A VA R T RE R E + V + RV++H
Sbjct: 202 EAAETLQKCFSPGVIEIQNI-KGKKVARVANARLDTFSREVFR-HEGLKNLVRLARVRNH 259
Query: 347 FI 348
+I
Sbjct: 260 YI 261
>gi|380478357|emb|CCF43643.1| RNA polymerase Rpb3/RpoA insert domain-containing protein
[Colletotrichum higginsianum]
Length = 372
Score = 213 bits (543), Expect = 9e-53, Method: Compositional matrix adjust.
Identities = 141/352 (40%), Positives = 184/352 (52%), Gaps = 46/352 (13%)
Query: 24 VPQKLPPHIEFQRTR-VQCNLDAPIHTENVMYSGAYASMGVDNSLQLDHFCNNFRVEVIR 82
P P E R R V N + + Y G YA G D+S LD F +NFRV+
Sbjct: 2 APSSTPSQAELDRRRIVGVNKETVTDVSSTDYPGTYA--GEDHSWDLDRFASNFRVQFHH 59
Query: 83 LTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRLGLIPI 142
+ + F L+G+DA+IANAFRRILIAE+PT+AIE V I NNTSVIQDEVLAHRLGLIP
Sbjct: 60 NAQHEASFSLVGVDASIANAFRRILIAEIPTIAIENVYIENNTSVIQDEVLAHRLGLIPF 119
Query: 143 IVDP----RLFEYMSE----NDTSNEKNTIVFKLHVLCERGGPRLTVKTNELKWLPNGSE 194
+P + ++ + S + NT+ +L + C R N
Sbjct: 120 TGNPEGIHKFLKWYRKPEQGGKGSFDYNTVQLRLRIECTR----------------NSDA 163
Query: 195 LPLETKPDS---NPSSKPRTYTSFSSSQDLLPEFSNNPIRPML-DITIARLGPGQEIELE 250
P ET PD N S + + + L + IRP+ DI +A+L PGQ IEL+
Sbjct: 164 APGETDPDKAFHNASVYAKDIEFVPTGRQLEFFSGEDAIRPVNPDILVAKLRPGQCIELD 223
Query: 251 AHAVKGIGKTHAKWSPVATAWYRMLPEIVLLEDVEDEDAEKLVKTCPVNVFDIEDI---- 306
H KGIG HAK+SPVATA YR++P I + + +DAEK K P V IE +
Sbjct: 224 MHMHKGIGADHAKFSPVATASYRLMPTITITRPILGQDAEKFAKCFPQGVIGIEKVTKKE 283
Query: 307 ----GS------GKKRATVAQPRACTLCRECLRCGEEWEKRVSIRRVKDHFI 348
GS G+K+A V T+ RECLR E+E +V + RV+DHFI
Sbjct: 284 AAVAGSGFEGQEGEKKAVVKDAMKDTVSRECLRH-PEFEGKVKLGRVRDHFI 334
>gi|443702676|gb|ELU00597.1| hypothetical protein CAPTEDRAFT_171865 [Capitella teleta]
Length = 349
Score = 213 bits (542), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 129/309 (41%), Positives = 179/309 (57%), Gaps = 45/309 (14%)
Query: 54 YSGAYASMGVDNSLQLDHFCNNFRVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPT 113
Y GA+A G D++ + F F + V+ LT D+EFD++G+D ++ANAFRRIL++E+PT
Sbjct: 25 YPGAWA--GYDDAWDMQKFIKKFFINVVSLTDTDIEFDMVGLDCSLANAFRRILLSEVPT 82
Query: 114 MAIEKVLIANNTSVIQDEVLAHRLGLIPIIVDPRLFEYMSE-NDTSNEKNTIVFKLHVLC 172
MAI+KV I NNTS+IQDEV AHRLGLIPI DPR+FEY SE N+ ++T+VF+L V C
Sbjct: 83 MAIDKVKIYNNTSIIQDEVFAHRLGLIPIKADPRMFEYRSEDNEEGTPEDTLVFELKVKC 142
Query: 173 ERGGPRL-------------TVKTNELKWLPNGSELPLETKPDSNPSSKPRTYTSFSSSQ 219
V T ++KW+P G++ Q
Sbjct: 143 TMNKNATEHATDPDELFINHKVTTRDMKWIPKGNQ------------------------Q 178
Query: 220 DLLPEFSNNPIRPMLDITIARLGPGQEIELEAHAVKGIGKTHAKWSPVATAWYRMLPEIV 279
+L + S P++ DI IA+L PGQEI++E H VKG+G+ HAK+SPVATA YR++P I
Sbjct: 179 ELFKD-SICPVQD--DILIAKLRPGQEIDIEMHCVKGLGQDHAKFSPVATASYRLMPVIE 235
Query: 280 LLEDVEDEDAEKLVKTCPVNVFDIEDIGSGKKRATVAQPRACTLCRECLRCGEEWEKRVS 339
L E+AE+L V +E+I G+K A V PRA T RE +R + V
Sbjct: 236 LTRPYLGEEAEQLAACFAPGVILVEEI-KGQKTALVVNPRADTCSREVMRHA-HLKDGVK 293
Query: 340 IRRVKDHFI 348
+ + + HFI
Sbjct: 294 LSQERYHFI 302
>gi|428166654|gb|EKX35626.1| hypothetical protein GUITHDRAFT_90183 [Guillardia theta CCMP2712]
Length = 375
Score = 213 bits (541), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 132/337 (39%), Positives = 194/337 (57%), Gaps = 36/337 (10%)
Query: 26 QKLPPHIEFQRTRVQCNLDAPIHTENVMYS-GAYASMGVDNSLQLDHFCNNFRVEVIRLT 84
+K+ + F + V CN AP HT YS G + D L ++ + + +++++ +
Sbjct: 5 EKMSADLRFFKEYVICNGTAPTHT--TTYSPGTFPE---DEVLDINKWRDRVKMKILEIK 59
Query: 85 KDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRLGLIPIIV 144
+D M FDL GI+ A+AN+ RR+L+AE+PTMAIEKV + NNT V++DE++A RLGLIPI+
Sbjct: 60 EDQMSFDLSGIEVALANSIRRVLLAEVPTMAIEKVFVYNNTGVLRDELVAQRLGLIPIMA 119
Query: 145 DPRLFEYMSENDTSNEKNTIVFKLHVLCERGGPRLTVKTNELKWLPNGSELPLETKPDSN 204
DP +F + S ++ T + KL E + + ++ + P +
Sbjct: 120 DPEIFSWPSAEAKGADETTNLDKL----------------EKEVIKFKLKVKCKKPPHDS 163
Query: 205 PSSKPRTYTSFSSSQDLLP------EFSNNPIRPML-DITIARLGPGQEIELEAHAVKGI 257
+P FSS + +P F ++P P+ DI I RL PGQE+++E H KG
Sbjct: 164 ADKEPINGKVFSSQLEWIPIGKQAETFKSSPPAPVHDDILITRLRPGQELDMEMHCHKGN 223
Query: 258 G---KTHAKWSPVATAWYRMLPEIVLLEDVEDEDAEKLVKTCPVNVFDIEDIGS--GKKR 312
+ HAKWSPVATAWYR+LP I L+E+V + A+ LVK CP++ FDIE+ G +R
Sbjct: 224 NCGDRGHAKWSPVATAWYRLLPRIDLVEEVTGDLADSLVKKCPMDCFDIEEAHGVPGGRR 283
Query: 313 ATVA-QPRACTLCRECLRCGEEWEKRVSIRRVKDHFI 348
A V+ + R CTLCREC+R E K V + R KDHFI
Sbjct: 284 AIVSDKVRDCTLCRECIR-EPELAKAVRLARKKDHFI 319
>gi|340375977|ref|XP_003386510.1| PREDICTED: DNA-directed RNA polymerases I and III subunit
RPAC1-like [Amphimedon queenslandica]
Length = 346
Score = 212 bits (540), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 139/304 (45%), Positives = 176/304 (57%), Gaps = 28/304 (9%)
Query: 57 AYASMGVDNSLQL----DHFCNNFRVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELP 112
A S+ DN L D F FRV+++ L+ +EFD+IG+D IANA RRIL+ E+P
Sbjct: 21 AEGSLSNDNEESLFWNFDKFVEKFRVDIVSLSYSSVEFDMIGLDPPIANAIRRILLVEVP 80
Query: 113 TMAIEKVLIANNTSVIQDEVLAHRLGLIPIIVDPRLFEYM---SENDTSNEKNT----IV 165
TMAIEKV + NNTSVIQD VLAHR+GLIP+ DPR F ++ +E+ E+ T +
Sbjct: 81 TMAIEKVHVINNTSVIQDGVLAHRMGLIPLFADPRKFSFLPPRTEDAPFPEQLTPQHMLE 140
Query: 166 FKLHVLCERGGPRLTVKTNELKWLPNGSELPLETKPDSNPSSKPRTYTSFSSSQDLLPEF 225
FKL V C R N P+ SE P E +S + L F
Sbjct: 141 FKLKVKCSRN-------VNA----PSDSEDPNELYISHKVTSGDMKWVPIEDQSQL---F 186
Query: 226 SNNPIRPM-LDITIARLGPGQEIELEAHAVKGIGKTHAKWSPVATAWYRMLPEIVLLEDV 284
S + IRP+ DI IA+L PGQEI+L VKGIGK HAK+SPVATA YR+LPEI L + V
Sbjct: 187 SVHDIRPVDKDILIAKLRPGQEIDLRLICVKGIGKDHAKFSPVATASYRLLPEITLTKPV 246
Query: 285 EDEDAEKLVKTCPVNVFDIEDIGSGKKRATVAQPRACTLCRECLRCGEEWEKRVSIRRVK 344
AEKL V ++D+ SG+KRA V+ PR T RE LR E+ + V + RVK
Sbjct: 247 VGPAAEKLASCFSKGVIRVQDV-SGQKRAVVSNPRRDTCSREVLR-HEDLKDSVQLSRVK 304
Query: 345 DHFI 348
DHFI
Sbjct: 305 DHFI 308
>gi|345566662|gb|EGX49604.1| hypothetical protein AOL_s00078g93 [Arthrobotrys oligospora ATCC
24927]
Length = 353
Score = 212 bits (539), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 131/330 (39%), Positives = 191/330 (57%), Gaps = 25/330 (7%)
Query: 29 PPHIEFQRTR-VQCNLDAPIHTENVMYSGAYASMGVDNSLQLDHFCNNFRVEVIRLTKDD 87
P E +R R V L+ + + + G Y G D+S LD F N ++++ + D
Sbjct: 3 PSKEELERRRIVGVELERVSNVTSTDFPGHYP--GEDHSWNLDDFKKNSKIDIHKANDLD 60
Query: 88 MEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRLGLIPIIVDPR 147
EFDLIG+DA++ANAFRRILI+E+PT+AIE V + NNTS++QDEVLA RLGL+P+ D +
Sbjct: 61 YEFDLIGVDASVANAFRRILISEVPTLAIETVFVHNNTSIVQDEVLAQRLGLVPLRGDKK 120
Query: 148 LFEYMSENDTSNEK--------NTIVFKLHVLCERGGPRLTVKTNELKWLPNGSELPLET 199
F+ + S ++ NT+V L V C R +T+ K N S +
Sbjct: 121 GFQQLRWRKKSPDEPAAEATDFNTVVMTLKVACTRNHATPNTETDPSKLYFNSSVYARDI 180
Query: 200 KPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPMLDITIARLGPGQEIELEAHAVKGIGK 259
K + + R + FS + ++ P+ P DI +A+L PGQEI+LE H V GIG+
Sbjct: 181 K----FAPQGRQSSWFSGAGEI------RPVNP--DILLAKLRPGQEIDLEIHCVLGIGQ 228
Query: 260 THAKWSPVATAWYRMLPEIVLLEDVEDEDAEKLVKTCPVNVFDIE-DIGSGKKRATVAQP 318
HAK+SPVATA YR+LP I + + + EDAEK V P V +++ D +G+ A V P
Sbjct: 229 DHAKFSPVATASYRLLPSIKIKKPITGEDAEKFVNCFPKGVAEVQKDKKTGENTAVVVNP 288
Query: 319 RACTLCRECLRCGEEWEKRVSIRRVKDHFI 348
R T+ RE LR +E++ +V + R++DHFI
Sbjct: 289 RKDTVSREVLR-HDEFKGKVELGRIRDHFI 317
>gi|427798089|gb|JAA64496.1| Putative rna polymerase i and iii subunit, partial [Rhipicephalus
pulchellus]
Length = 445
Score = 211 bits (538), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 118/263 (44%), Positives = 157/263 (59%), Gaps = 17/263 (6%)
Query: 31 HIEFQRTRVQCNLDAPIHTENVMYSGAYASMGVDNSLQLDHFCNNFRVEVIRLTKDDMEF 90
H+E RT V +HTE V + GA +GVD S F FRV +I + +EF
Sbjct: 3 HLERMRTHVHLREHDLLHTETVDHCGAI--LGVDYSWDFQKFVKKFRVGIISMDDTTIEF 60
Query: 91 DLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRLGLIPIIVDPRLFE 150
DL+G+D +IANA RRIL+AE+PTMA +KV + NNT +IQDEVLAHR+GL+P +DPR+FE
Sbjct: 61 DLVGLDPSIANAIRRILLAEVPTMAPDKVYLYNNTGIIQDEVLAHRIGLVPFNIDPRMFE 120
Query: 151 YMSENDTSNEKNTIVFKLHVLCERGGPRLTVKTNELKWLPNGSELPLETKPDSNPSSKPR 210
Y + ++T+ F+L V C + P + P E D +K
Sbjct: 121 YRESESDGSPEDTVEFELKVKCTKN-----------PQAPKDATTPDELYKDHMVYTKHL 169
Query: 211 TYTSFSSSQDLLPEFSNNPIRPML-DITIARLGPGQEIELEAHAVKGIGKTHAKWSPVAT 269
T+ S ++ F N P RP+ DI +A+L PGQEI+L+ H VKG G+ HAK+SPVAT
Sbjct: 170 TWNPLGSQAEI---FGNKPPRPVHDDIILAKLRPGQEIDLKLHCVKGTGQVHAKFSPVAT 226
Query: 270 AWYRMLPEIVLLEDVEDEDAEKL 292
A YR+LPEI LL V DE AE+L
Sbjct: 227 ASYRLLPEIRLLRPVRDEQAERL 249
Score = 114 bits (286), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 72/171 (42%), Positives = 95/171 (55%), Gaps = 5/171 (2%)
Query: 179 LTVKTNELKWLPNGSELPLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPMLD-IT 237
L VK + P + P E D +K T+ S ++ F N P RP+ D I
Sbjct: 260 LKVKCTKNPQAPKDATTPDELYKDHMVYTKHLTWNPLGSQAEI---FGNKPPRPVHDDII 316
Query: 238 IARLGPGQEIELEAHAVKGIGKTHAKWSPVATAWYRMLPEIVLLEDVEDEDAEKLVKTCP 297
+A+L PGQEI+L+ H VKG G+ HAK+SPVATA YR+LPEI LL V DE AE+L
Sbjct: 317 LAKLRPGQEIDLKLHCVKGTGQVHAKFSPVATASYRLLPEIRLLRPVRDEQAERLQGCFS 376
Query: 298 VNVFDIEDIGSGKKRATVAQPRACTLCRECLRCGEEWEKRVSIRRVKDHFI 348
V +++D G K A VA RA T R R ++ + V + RVKDH+I
Sbjct: 377 KGVIELDDEPDGHKVARVANARADTCSRNVFRF-DDLKDAVELSRVKDHYI 426
>gi|321465930|gb|EFX76928.1| hypothetical protein DAPPUDRAFT_213644 [Daphnia pulex]
Length = 353
Score = 211 bits (538), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 120/295 (40%), Positives = 175/295 (59%), Gaps = 29/295 (9%)
Query: 62 GVDNSLQLDHFCNNFRVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLI 121
G D+S + F ++ ++R+ ++EFDLIG+D AI NAFRRIL++++PTMA +KV +
Sbjct: 43 GFDDSWSFEKFKKRLKINIVRMENMEIEFDLIGVDPAIPNAFRRILLSDIPTMAFDKVFM 102
Query: 122 ANNTSVIQDEVLAHRLGLIPIIVDPRLFEYMSENDTSNE-KNTIVFKLHVLCERGGPRLT 180
NNTS+IQDEVLAHRLGLIP+ DPRLFE+ +E+D + ++T+ F+L V C
Sbjct: 103 FNNTSIIQDEVLAHRLGLIPLKADPRLFEFRAEDDDAGTPEDTLEFELKVKC-------- 154
Query: 181 VKTNELKWLPNGSELPLETKPDSNPSSKPRTYTSFSSSQDLLPE------FSNNPIRPML 234
W P TK +NP R + +S +P F+ + + P+
Sbjct: 155 ------SWNPQ------RTKDHTNPEHLYRDFRVLTSHLKWMPLGGQKDIFTPDAVGPVD 202
Query: 235 D-ITIARLGPGQEIELEAHAVKGIGKTHAKWSPVATAWYRMLPEIVLLEDVEDEDAEKLV 293
D I IA++ PG E++++ HA+KG G+ HAK+SPVATA+YR+LP++ LL++VE E A++L
Sbjct: 203 DKILIAKMRPGHELDIKLHAMKGTGREHAKFSPVATAFYRLLPQVKLLKEVEGEAAQRLQ 262
Query: 294 KTCPVNVFDIEDIGSGKKRATVAQPRACTLCRECLRCGEEWEKRVSIRRVKDHFI 348
K V D+ D G KK A V R R R + E V + R +DHFI
Sbjct: 263 KCFSPGVIDLVDSGE-KKVAKVNDARYDICSRNVFRHEDLKEDTVKLTRARDHFI 316
>gi|209876648|ref|XP_002139766.1| DNA-directed RNA polymerases I and III subunit RPAC1
[Cryptosporidium muris RN66]
gi|209555372|gb|EEA05417.1| DNA-directed RNA polymerases I and III subunit RPAC1, putative
[Cryptosporidium muris RN66]
Length = 351
Score = 210 bits (534), Expect = 9e-52, Method: Compositional matrix adjust.
Identities = 134/335 (40%), Positives = 181/335 (54%), Gaps = 57/335 (17%)
Query: 34 FQRTRVQCNLDAPIHTENVMYSGAYA------------SMGVDNSLQLDHFCNNFRVEVI 81
+ ++C L+ P + Y G+ M V+N L+L +++
Sbjct: 16 YSSKYLKCTLEGPRNVGGYGYIGSRTLSETADRKNTIKPMTVENILKL------IDIKIN 69
Query: 82 RLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRLGLIP 141
LT D + FDLIG+DAA+ANA RRIL+ E+PT+AIE V I N+ VIQDEVLAHRLGLIP
Sbjct: 70 ELTSDYINFDLIGVDAAVANALRRILLVEVPTVAIETVQIYQNSGVIQDEVLAHRLGLIP 129
Query: 142 IIVDPRLFEYMSENDTSNEKNTIVFKLHVLCER-------GGPRLTVKTNELKWLPNGSE 194
+D L ++ +E+ NEKN++ FKL V C + G + + +L W+P
Sbjct: 130 FNIDLDLIDFRAEDQDLNEKNSVCFKLCVECNKYDIDDKNGITSKAIYSKDLIWVP---- 185
Query: 195 LPLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPMLDITIARLGPGQEIELEAHAV 254
S SQ + E P DI I +L PGQ IE +
Sbjct: 186 --------------------MSESQKQIFE-KKPPSVVYPDILITKLRPGQVIEAILYCE 224
Query: 255 KGIGKTHAKWSPVATAWYRMLPEIVLLED-VEDEDAEKLVKTCPVNVFDIEDIGSGKKRA 313
KGIGKTHAKWSPV+TA YR+LPE E + +DA++ V+ CP+NVFDIEDI +GK
Sbjct: 225 KGIGKTHAKWSPVSTATYRLLPEFKFPEGYITGKDAKEFVEVCPMNVFDIEDI-TGK--V 281
Query: 314 TVAQPRACTLCRECLRCGEEWEKRVSIRRVKDHFI 348
V PR CT CR C+ E++ K+V I + K HFI
Sbjct: 282 YVKNPRNCTTCRACI---EKFPKKVEIFKNKHHFI 313
>gi|343427703|emb|CBQ71230.1| probable Rpc40-40 kD subunit of DNA-directed RNA polymerases I and
III [Sporisorium reilianum SRZ2]
Length = 402
Score = 209 bits (531), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 134/321 (41%), Positives = 180/321 (56%), Gaps = 40/321 (12%)
Query: 35 QRTRVQCNLDAPIHTENVMYSGAYASMGVDNSLQLDHFCNNFRVEVIRLTKDDMEFDLIG 94
+R N D P+H G D++ L + RV V RL+ EFDLIG
Sbjct: 68 ERVGSVANTDFPLHHP-----------GEDHAFSLAAANDKLRVIVTRLSDASCEFDLIG 116
Query: 95 IDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRLGLIPIIVDPRLFEYMSE 154
+DA+IANA RR+L+AE+PT+AIE V I NNTS+IQDEVL+HRLGL+P+ ++P +
Sbjct: 117 VDASIANAVRRVLMAEVPTVAIEHVYIWNNTSIIQDEVLSHRLGLVPLAINPDKVLMRNA 176
Query: 155 NDTSNEKNTIVFKLHVLCERGGPRLTVKTNELKWLPNGSELPLETKPDS-----NPSSKP 209
D +++ NT+VF L CER N S ET PD N S+
Sbjct: 177 GDDADDSNTVVFHLKAKCER----------------NRSAARGETDPDKLYIGHNVYSEQ 220
Query: 210 RTYTSFSSSQDLLPEFSNNPIRPMLD-ITIARLGPGQEIELEAHAVKGIGKTHAKWSPVA 268
+ + QD +F++ P RP+ D I IA+L PGQE++LE H KGIGK HAK+SPVA
Sbjct: 221 LQWDA-KGGQD--EDFADAPPRPVHDKILIAKLRPGQELDLELHCEKGIGKDHAKFSPVA 277
Query: 269 TAWYRMLPEIVLLEDVEDEDAEKLVKTCPVNVFDIEDIGSGKKRAT-VAQPRACTLCREC 327
TA YR+LP I LL+ + E + VK P V +E GSG +R V R T+ RE
Sbjct: 278 TATYRLLPHIQLLQPIPAEHIDSFVKCFPPGVIGVE--GSGDQRKVFVKDARRDTISREV 335
Query: 328 LRCGEEWEKRVSIRRVKDHFI 348
R E+E +V + RV+DHF+
Sbjct: 336 FR-HHEFEDKVKLGRVRDHFL 355
>gi|331225845|ref|XP_003325593.1| DNA-directed RNA Polymerase III subunit C5 [Puccinia graminis f.
sp. tritici CRL 75-36-700-3]
gi|309304583|gb|EFP81174.1| DNA-directed RNA Polymerase III subunit C5 [Puccinia graminis f.
sp. tritici CRL 75-36-700-3]
Length = 359
Score = 207 bits (528), Expect = 4e-51, Method: Compositional matrix adjust.
Identities = 121/288 (42%), Positives = 172/288 (59%), Gaps = 17/288 (5%)
Query: 62 GVDNSLQLDHFCNNFRVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLI 121
G N+ + F N ++++ RL+ MEFDLIGIDA+IANA RRI++AE+PT+AIE V +
Sbjct: 47 GESNAWDIQTFKKNLKIKICRLSSTSMEFDLIGIDASIANALRRIMLAEVPTVAIEDVFV 106
Query: 122 ANNTSVIQDEVLAHRLGLIPIIVDPRLFEYMSENDTSNEKNTIVFKLHVLCERGGPRLTV 181
NNTS++ DEVLA RLGL+P+ +DPRL + M ++ + + NTIVFKL V C R
Sbjct: 107 WNNTSLVHDEVLAQRLGLVPLKIDPRLID-MRTDEGATDLNTIVFKLVVNCRRN------ 159
Query: 182 KTNELKWLPNGSELPLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPML-DITIAR 240
+P + PL+ +S +++ + D+ F + P RP+ DI + +
Sbjct: 160 -----PHVPKTEKDPLKLYQNSLVTTEALEWEPKGDQVDM---FGSEPPRPVQNDIVLVK 211
Query: 241 LGPGQEIELEAHAVKGIGKTHAKWSPVATAWYRMLPEIVLLEDVEDEDAEKLVKTCPVNV 300
+ PGQEI E H VKGI K HAK+SPVATA YR+LP IV+ E + + D K V
Sbjct: 212 MRPGQEIRAEMHCVKGIAKDHAKFSPVATASYRLLPHIVIHEPIPEPDCLKFQSCFSPGV 271
Query: 301 FDIEDIGSGKKRATVAQPRACTLCRECLRCGEEWEKRVSIRRVKDHFI 348
+I + G K V PR ++ RE LR E+E +V++ RV+DHFI
Sbjct: 272 IEIVNGPKGGKTCKVKNPRNDSVSREVLR-HPEFEGKVTLGRVRDHFI 318
>gi|407929549|gb|EKG22366.1| DNA-directed RNA polymerase 30-40kDa subunit conserved site
[Macrophomina phaseolina MS6]
Length = 377
Score = 206 bits (525), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 141/364 (38%), Positives = 192/364 (52%), Gaps = 65/364 (17%)
Query: 24 VPQKLPPHIEFQRTRVQCNLDAPIHTENVM------YSGAYASMGVDNSLQLDHFCNNFR 77
V ++ P E Q+ R+ +H E+V Y G + G D+ L+ F NFR
Sbjct: 2 VSKRDPSQEELQQRRI-----VGVHAEHVSNISSTDYPGHFP--GEDHRWDLEKFRKNFR 54
Query: 78 VEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRL 137
VE R + + +F LIG+DAAIANAFRRILIAELPT+AIE V I NTS+IQDEVLAHRL
Sbjct: 55 VEFHRNEQFESQFSLIGVDAAIANAFRRILIAELPTLAIEDVYILKNTSIIQDEVLAHRL 114
Query: 138 GLIPIIVDPRLFEYMS----------ENDTSNEKNTIVFKLHVLCERGGPRLTVKTNELK 187
G+IP+ P+ + M+ E + NTIV +L+V CE
Sbjct: 115 GMIPLKGSPKAIQNMTWYKKPESGEAEQGAHTDYNTIVLELNVQCE-------------- 160
Query: 188 WLPNGSELPLETKPDSNPSSKPRTYTSFSSSQDLLP----------EFSNNPIRPMLDIT 237
W P+G E+ K +++P + ++ +P E + P+ P DI
Sbjct: 161 WHPDGREMA--KKGETDPKKLFINSSVYAHQIKFIPTGRQAELFAGENAIQPVNP--DIL 216
Query: 238 IARLGPGQEIELEAHAVKGIGKTHAKWSPVATAWYRMLPEIVLLEDVEDEDAEKLVKTCP 297
IA+L PGQ I L H +KGIG HAK+SPVATA YR+LP I + + + AEK + P
Sbjct: 217 IAKLRPGQSINLSMHCIKGIGSDHAKFSPVATATYRLLPHIQITQPILGAHAEKFARCFP 276
Query: 298 ------VNVFDIEDIG-------SGKKRATVAQPRACTLCRECLRCGEEWEKRVSIRRVK 344
V V D E +G+KRA VA P T+ RE LR +E++ +V + RV+
Sbjct: 277 PGVIAQVPVTDEEAASDPALAGHAGEKRAVVANPFNDTVTREVLRH-DEFKDKVKLGRVR 335
Query: 345 DHFI 348
DHFI
Sbjct: 336 DHFI 339
>gi|310800375|gb|EFQ35268.1| RNA polymerase Rpb3/RpoA insert domain-containing protein
[Glomerella graminicola M1.001]
Length = 372
Score = 206 bits (525), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 140/352 (39%), Positives = 184/352 (52%), Gaps = 46/352 (13%)
Query: 24 VPQKLPPHIEFQRTR-VQCNLDAPIHTENVMYSGAYASMGVDNSLQLDHFCNNFRVEVIR 82
P P E R R V N + + Y G YA G D++ LD F +NFRV+
Sbjct: 2 APSSTPSQAELDRRRIVGINKETVTDVNSTDYPGTYA--GEDHAWDLDRFASNFRVQFHY 59
Query: 83 LTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRLGLIPI 142
+ + F LIG+DA+IANAFRRILIAE+PT+AIE V I NNTSVIQDEVLAHRLGLIP
Sbjct: 60 NAQHEASFSLIGVDASIANAFRRILIAEIPTIAIENVYIENNTSVIQDEVLAHRLGLIPF 119
Query: 143 IVDP----RLFEYMSE----NDTSNEKNTIVFKLHVLCERGGPRLTVKTNELKWLPNGSE 194
+P + ++ + S + NT+ +L V C R N
Sbjct: 120 TGNPEGIHKFLKWYRKPEHGGKGSFDYNTVQLRLRVECTR----------------NPDA 163
Query: 195 LPLETKPDS---NPSSKPRTYTSFSSSQDLLPEFSNNPIRPML-DITIARLGPGQEIELE 250
P ET P+ N S + + + L + IRP+ DI +A+L PGQ IEL+
Sbjct: 164 APGETDPNKAFLNSSVYAKDIEFVPTGRQLEFFSGEDAIRPVNPDILVAKLRPGQCIELD 223
Query: 251 AHAVKGIGKTHAKWSPVATAWYRMLPEIVLLEDVEDEDAEKLVKTCPVNVFDIEDI---- 306
H KGIG HAK+SPVATA YR++P I + + +DAEK K P V I+ +
Sbjct: 224 MHMHKGIGADHAKFSPVATASYRLMPTINITRPILGQDAEKFAKCFPEGVIGIDKVTKKD 283
Query: 307 ----GS------GKKRATVAQPRACTLCRECLRCGEEWEKRVSIRRVKDHFI 348
GS G+K+A V T+ RECLR E+E +V + RV+DHFI
Sbjct: 284 AAVAGSGYEGHEGEKKAVVKDAMKDTVSRECLRH-PEFEGKVKLGRVRDHFI 334
>gi|443923219|gb|ELU42493.1| ribonuclease H [Rhizoctonia solani AG-1 IA]
Length = 1023
Score = 205 bits (522), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 117/283 (41%), Positives = 167/283 (59%), Gaps = 17/283 (6%)
Query: 69 LDHFCNNFRVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVI 128
L HF VEV + ++FDL+G+DA+IANAFRRILIAE+PT+AIE V I NNTSVI
Sbjct: 717 LPHF-QRLHVEVRGADDEAVDFDLVGVDASIANAFRRILIAEVPTVAIENVYIWNNTSVI 775
Query: 129 QDEVLAHRLGLIPIIVDPRLFEYMSENDTSNEKNTIVFKLHVLCERGGPRLTVKTNELKW 188
QDEVLAHRLGL+PI DP L ++ ++NT+VFKL V C R
Sbjct: 776 QDEVLAHRLGLVPIRADPALLDFPDSAVGPTDRNTLVFKLSVTCSRN-----------PG 824
Query: 189 LPNGSELPLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPM-LDITIARLGPGQEI 247
+P P ++N S + ++ + + +F NNP RP I +A+L PGQE+
Sbjct: 825 VPKDETDPAVLYKNANVLSG---HMEWNGVGEQVNDFGNNPPRPHNPKILLAKLRPGQEL 881
Query: 248 ELEAHAVKGIGKTHAKWSPVATAWYRMLPEIVLLEDVEDEDAEKLVKTCPVNVFDIEDIG 307
E+E H VKG+G+ HAK+SPVATA YR++P ++ + + +K V P VF +E
Sbjct: 882 EMELHCVKGVGQDHAKFSPVATASYRLMPHVIFRQPIPPHLCDKFVSCFPSGVFAVEQGA 941
Query: 308 SGKKRATVAQPRACTLCRECLRCGEEWEKRVSIRRVKDHFICK 350
+G+K+ R T+ RE LR +E+E + + R++D F+ +
Sbjct: 942 NGQKKVVAKDMRKDTVSREVLR-HKEFEGMIELTRIRDFFMFR 983
>gi|242021511|ref|XP_002431188.1| DNA-directed RNA polymerase I 40 kDa polypeptide, putative
[Pediculus humanus corporis]
gi|212516437|gb|EEB18450.1| DNA-directed RNA polymerase I 40 kDa polypeptide, putative
[Pediculus humanus corporis]
Length = 347
Score = 204 bits (520), Expect = 4e-50, Method: Compositional matrix adjust.
Identities = 120/280 (42%), Positives = 170/280 (60%), Gaps = 41/280 (14%)
Query: 83 LTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRLGLIPI 142
L +MEFDL+GI+ A+ANAFRRIL++E+P+MAIEKV ++NNT++I+DEVLAHRLGL+P+
Sbjct: 50 LNDTEMEFDLVGINCAVANAFRRILLSEVPSMAIEKVFVSNNTTLIKDEVLAHRLGLVPL 109
Query: 143 IVDPRLFEYMSENDTS-NEKNTIVFKLHVLC--ERGGPR-----------LTVKTNELKW 188
D RLFEY SEN NE++T+ F+L + C + G + +V + LKW
Sbjct: 110 KADSRLFEYRSENSNEPNEQDTLEFELKIKCSVNKEGHKNSYQIDDLYINHSVYSKHLKW 169
Query: 189 LPNGSELPLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPMLDITIARLGPGQEIE 248
+P GS+ TY E + P+ P DI + +L PGQE++
Sbjct: 170 VPIGSQ--------------GTTYD----------EKNIGPVLP--DILLNKLRPGQELD 203
Query: 249 LEAHAVKGIGKTHAKWSPVATAWYRMLPEIVLLEDVEDEDAEKLVKTCPVNVFDIEDIGS 308
L+ HAVKG+GK H K+SPVATA+YRMLPEI +++ V E AE+L V +I +
Sbjct: 204 LKLHAVKGLGKDHTKFSPVATAFYRMLPEITMVKKVTGEAAERLQNCFSPGVIEIRENDE 263
Query: 309 GKKRATVAQPRACTLCRECLRCGEEWEKRVSIRRVKDHFI 348
G+K A VA R + R R E+ + V ++RV++HFI
Sbjct: 264 GEKEAYVASARYDSGSRIVFR-QEDLKDCVEMKRVRNHFI 302
>gi|388858416|emb|CCF48010.1| probable Rpc40-40 kD subunit of DNA-directed RNA polymerases I and
III [Ustilago hordei]
Length = 401
Score = 204 bits (520), Expect = 4e-50, Method: Compositional matrix adjust.
Identities = 131/322 (40%), Positives = 177/322 (54%), Gaps = 42/322 (13%)
Query: 35 QRTRVQCNLDAPIHTENVMYSGAYASMGVDNSLQLDHFCNNFRVEVIRLTKDDMEFDLIG 94
+R N D P+H G +S L V V RL+ EFDLIG
Sbjct: 66 ERVGSIANTDFPLHHP-----------GESHSFSLSSVNEKLNVIVTRLSDVSCEFDLIG 114
Query: 95 IDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRLGLIPIIVDPRLFEYMSE 154
+DA+IANA RR+L+AE+PT+AIE V I NNTS+IQDEVL+HRLGL+P+ ++P
Sbjct: 115 VDASIANAVRRVLMAEVPTVAIEHVYIWNNTSIIQDEVLSHRLGLVPLAINPDKVLIRMP 174
Query: 155 NDTSNEKNTIVFKLHVLCERGGPRLTVKTNELKWLPNGSELPLETKPDSNPSSKPRTYTS 214
D +++ NT+VF L CER PN + + +S+P +
Sbjct: 175 GDNADDSNTVVFSLKAKCERN--------------PNAA------RGESDPDKLYIGHNV 214
Query: 215 FSSS------QDLLPEFSNNPIRPM-LDITIARLGPGQEIELEAHAVKGIGKTHAKWSPV 267
+S D +F++ P +P+ I IA+L PGQE++LE H KGIG+ HAK+SPV
Sbjct: 215 YSEQLVWDPKGDQDEDFADAPPKPVHAKILIAKLRPGQELDLELHCEKGIGRDHAKFSPV 274
Query: 268 ATAWYRMLPEIVLLEDVEDEDAEKLVKTCPVNVFDIEDIGSGKKR-ATVAQPRACTLCRE 326
ATA YR+LP I LL+ VE E +KL+K P V E G GK R A V R T+ RE
Sbjct: 275 ATATYRLLPHIQLLKPVEGEQVDKLLKCFPPGVIGAE--GEGKNRKAYVKDARKDTISRE 332
Query: 327 CLRCGEEWEKRVSIRRVKDHFI 348
LR E+E +V + RV+DHF+
Sbjct: 333 VLRHA-EFEDKVKLGRVRDHFL 353
>gi|392560708|gb|EIW53890.1| insert subdomain of RNA polymerase alpha subunit [Trametes
versicolor FP-101664 SS1]
Length = 366
Score = 204 bits (520), Expect = 4e-50, Method: Compositional matrix adjust.
Identities = 129/328 (39%), Positives = 178/328 (54%), Gaps = 37/328 (11%)
Query: 27 KLPPHIEFQRTRVQCNLDAPIHTENVMYSGAYASMGVDNSLQLDHFCNNFRVEVIRLTKD 86
+LPP + R V + + + + G Y G D++ L F N V V RL++
Sbjct: 8 QLPPSVFNPRRHVGVHAERVSDVASTDFPGHYP--GEDHTWSLARFKENLTVSVKRLSQR 65
Query: 87 DMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRLGLIPIIVDP 146
+EFDL+G+DA+IANAFRRI+IAE+PT+AIE V + NNTSVI DE+LA RLGLIP+ VDP
Sbjct: 66 SIEFDLVGVDASIANAFRRIMIAEVPTIAIEDVFVWNNTSVIHDEILAQRLGLIPLNVDP 125
Query: 147 RLFEYMSENDTSNEKNTIVFKLHVLCERGGPRLT----VKTNELKWLPNGSELPLETKPD 202
LF D ++NT+VF+L + C RG V + +LKW+P G +
Sbjct: 126 ALFSPRLPGDIPYDRNTLVFQLDIECSRGAKGAIINEYVTSGDLKWVPQGEQE------- 178
Query: 203 SNPSSKPRTYTSFSSSQDLLPEFSNNPIRPMLDITIARLGPGQEIELEAHAVKGIGKTHA 262
S DL+P +N DI IA+L PGQ I +E HA+KG+GK HA
Sbjct: 179 -------------SVFGDLVPTATNK------DIVIAKLRPGQVINVELHAIKGVGKEHA 219
Query: 263 KWSPVATAWYRMLPEIVL--LEDVEDEDAEKLVKTCPVNVFDIEDIGSGKKRATVAQPRA 320
KWSPVATA YR+ P ++L + + A+K V + G+ R
Sbjct: 220 KWSPVATATYRLHPLVLLNPSKPIPPHLAQKFASCFSPGVVKVSP--DGEVSIDDRHLRK 277
Query: 321 CTLCRECLRCGEEWEKRVSIRRVKDHFI 348
T+ RE LR +E+E V ++RV+D FI
Sbjct: 278 ETMSREVLRH-KEFEGSVELKRVRDWFI 304
>gi|340501661|gb|EGR28416.1| polymerase i polypeptide 30kda, putative [Ichthyophthirius
multifiliis]
Length = 330
Score = 204 bits (519), Expect = 5e-50, Method: Compositional matrix adjust.
Identities = 117/305 (38%), Positives = 172/305 (56%), Gaps = 31/305 (10%)
Query: 50 ENVMYSGAYASMGVDNSLQLDHFCNNFRVEVIRLTKDDMEFDLIGIDAAIANAFRRILIA 109
+ + YS A+ S Q + F +N ++E++ + +EF L G+DA IANA RRI+IA
Sbjct: 13 QEINYSAAFISQD-----QFNTFVDNIKIEILNSKPEQIEFQLQGVDAPIANALRRIMIA 67
Query: 110 ELPTMAIEKVLIANNTSVIQDEVLAHRLGLIPIIVDPRLFEYMSENDTSNEKNTIVFKLH 169
E+PTMAI KV I NTS+I DEVLAHRLGL+PI DPRLFE ++ NE N+I F +
Sbjct: 68 EVPTMAIHKVYIYQNTSIIPDEVLAHRLGLLPIQADPRLFEEKEDDAEYNENNSIKFSIK 127
Query: 170 VLCERGGPRLTVKTNEL------KWLPNGSELPLETKPDSNPSSKPRTYTSFSSSQDLLP 223
V C++ +L K+L N + K + + K R
Sbjct: 128 VKCQKKQTYNNHSQKDLENLDPEKYLENAIVYSGQFKWEPIGNQKER------------- 174
Query: 224 EFSNNPIRPMLD-ITIARLGPGQEIELEAHAVKGIGKTHAKWSPVATAWYRMLPEIVLLE 282
F N I+ + D I +A+L QEI E KG+GK HAKWSPV TA+YR++P I +LE
Sbjct: 175 -FKENIIKIVHDNIIVAKLRENQEIIAEVICQKGMGKNHAKWSPVCTAYYRLMPSIKILE 233
Query: 283 DVEDEDAEKLVKTCPVNVFDIEDIGSGKKRATVAQPRACTLCRECLRCGEEWEKRVSIRR 342
++ + A++L + CP V+D+ + +A V CT+CREC+R EE +++ + +
Sbjct: 234 PIQGKKAQQLKEKCPAKVYDVIN-----NQAKVVNEIECTMCRECIREDEELNQKLQLGK 288
Query: 343 VKDHF 347
+D+F
Sbjct: 289 EQDNF 293
>gi|328851366|gb|EGG00521.1| hypothetical protein MELLADRAFT_111755 [Melampsora larici-populina
98AG31]
Length = 359
Score = 204 bits (519), Expect = 5e-50, Method: Compositional matrix adjust.
Identities = 120/288 (41%), Positives = 164/288 (56%), Gaps = 17/288 (5%)
Query: 62 GVDNSLQLDHFCNNFRVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLI 121
G N+ L F N +++ RL+ MEFDL+G+DA+IANA RRI+IAE+P++AIE V +
Sbjct: 47 GESNAWDLSEFKKNLNIKISRLSSSAMEFDLVGVDASIANALRRIMIAEVPSIAIEDVFV 106
Query: 122 ANNTSVIQDEVLAHRLGLIPIIVDPRLFEYMSENDTSNEKNTIVFKLHVLCERGGPRLTV 181
NNTS++ DEVLA RLGLIP+ VDPR + M + + + NT+VFKL C R
Sbjct: 107 WNNTSLVHDEVLAQRLGLIPLKVDPRKLD-MRGPEGATDMNTLVFKLVARCSRN------ 159
Query: 182 KTNELKWLPNGSELPLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPML-DITIAR 240
PN S+ + S Y + D F + P + + DI + +
Sbjct: 160 --------PNVSKTEKDPSILYTDSDVTSGYLDWQPKGDQPALFGSQPPKAVQDDILLVK 211
Query: 241 LGPGQEIELEAHAVKGIGKTHAKWSPVATAWYRMLPEIVLLEDVEDEDAEKLVKTCPVNV 300
+ PGQEI +E H VKGIGK HAK+SPVATA YR+LP I++ E + + EK V
Sbjct: 212 MRPGQEISIEMHCVKGIGKDHAKFSPVATASYRLLPHIIIHEPILEPHCEKFTSCFAQGV 271
Query: 301 FDIEDIGSGKKRATVAQPRACTLCRECLRCGEEWEKRVSIRRVKDHFI 348
+I G+K V PR T+ RE LR E+E +VS+ RV+DHFI
Sbjct: 272 IEIVKNQHGQKECKVLNPRKDTVSREVLR-HPEFEGKVSLGRVRDHFI 318
>gi|342319511|gb|EGU11459.1| Hypothetical Protein RTG_02619 [Rhodotorula glutinis ATCC 204091]
Length = 785
Score = 203 bits (517), Expect = 8e-50, Method: Compositional matrix adjust.
Identities = 139/327 (42%), Positives = 181/327 (55%), Gaps = 35/327 (10%)
Query: 28 LPPHIEFQRTRVQCNLDAPIHTENVMYSGAYASMGVDNSLQLDHFCNNFRVEVIRLTKDD 87
+P H R V+ + E+V + G + G + LDHF +N RV+V L+
Sbjct: 31 MPAHTPADRNLVRIGKE---RVESVHFPGHHP--GESHHWDLDHFRSNLRVQVNSLSPTA 85
Query: 88 MEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRLGLIPIIVDPR 147
+EFDL+G+DA++ANA RRI+IAE+PT+A+E V + NNTS+IQDEVLA RLGLIP+ +DPR
Sbjct: 86 LEFDLVGVDASVANAIRRIVIAEVPTVAVENVYVWNNTSIIQDEVLAQRLGLIPLAIDPR 145
Query: 148 LFEYMSENDT-SNEKNTIVFKLHVLCERGGPRLTVKTNELK----WLPNGSELPLETKPD 202
+ D + NT+VF L CER R VK E W +G E+
Sbjct: 146 KLDMKKTPDEPPTDLNTVVFSLIARCER---RKDVKKGETDPHKIW--SGVEV-----LS 195
Query: 203 SNPSSKPRTYTSFSSSQDLLPEFSNNPIRPML-DITIARLGPGQEIELEAHAVKGIGKTH 261
SN S R QD L F + P +P + DI +A++ GQEI E H VKGIGK H
Sbjct: 196 SNLSFSSR------GGQDEL--FGDRPPKPAIDDILVAKMRGGQEIVAELHCVKGIGKDH 247
Query: 262 AKWSPVATAWYRMLPEIVLLEDVEDEDAEKLVKTCPVNVFDIEDIGSGKKRATVAQPRAC 321
AKWSPVATA YR+LP I +L D+ E K P V I R VA R
Sbjct: 248 AKWSPVATASYRLLPTIDILADIPPELHSKFEACFPPGV-----IEQRSGRLVVANARRD 302
Query: 322 TLCRECLRCGEEWEKRVSIRRVKDHFI 348
T+ RE LR E+E +V + RV+DHFI
Sbjct: 303 TVSREVLRH-PEFEDKVKLGRVRDHFI 328
>gi|300120859|emb|CBK21101.2| unnamed protein product [Blastocystis hominis]
Length = 366
Score = 203 bits (516), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 124/295 (42%), Positives = 170/295 (57%), Gaps = 41/295 (13%)
Query: 69 LDHFCNNFRVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVI 128
LD N ++ ++ + + + F+L+G+DA+IANA RR+LIAE+PTMAI V + NNTSV+
Sbjct: 29 LDGLDENLKINILSQSDEQVVFELVGVDASIANALRRVLIAEVPTMAISTVFMNNNTSVM 88
Query: 129 QDEVLAHRLGLIPIIVDPRLFEYM---SENDTS----NEKNTIVFKLHVLCERGGPRLTV 181
QDEVL HRLGLIPI D F+Y+ EN + +KN++ F L V C P L+
Sbjct: 89 QDEVLCHRLGLIPIKADANDFDYICPPGENGHNRSDFTDKNSLKFNLRVTC----PSLS- 143
Query: 182 KTNELKWLPNGSELPLETKPDSNPSSKPRTYTSFSSSQDL--------LPEFSNNPIRPM 233
EL+ N + T +S S +L LPE +
Sbjct: 144 ---ELQKAANNRNV--------------EYLTVYSQSLELEKLGRQLDLPEGQIGLVHD- 185
Query: 234 LDITIARLGPGQEIELEAHAVKGIGKTHAKWSPVATAWYRMLPEIVLLEDVEDEDAEKLV 293
DI + +L PGQ I+LE +A KG+G+ HAKWSPV TA YRM P I + + EDAE++
Sbjct: 186 -DIILTKLAPGQAIDLECYATKGVGEDHAKWSPVCTAVYRMRPSIRFPKPLVGEDAERMK 244
Query: 294 KTCPVNVFDIEDIGSGKKRATVAQPRACTLCRECLRCGEEWEKRVSIRRVKDHFI 348
+TCP+ VFDIEDIG G+K VA CT+CREC+R E EK V + +++ FI
Sbjct: 245 QTCPMGVFDIEDIG-GEKTLHVAHDLNCTMCRECIRLPENREK-VQLGVIRNDFI 297
>gi|429853404|gb|ELA28479.1| DNA-directed RNA polymerases i and iii 40 kda polypeptide
[Colletotrichum gloeosporioides Nara gc5]
Length = 371
Score = 202 bits (515), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 141/345 (40%), Positives = 181/345 (52%), Gaps = 42/345 (12%)
Query: 29 PPHIEFQRTR-VQCNLDAPIHTENVMYSGAYASMGVDNSLQLDHFCNNFRVEVIRLTKDD 87
P E R R V N + + Y G Y G D+S L+ F NFR++ ++ D
Sbjct: 6 PSQAELDRRRIVGINKETVTDVTSTDYPGTYP--GEDHSWDLEKFAENFRIQFHHNSQHD 63
Query: 88 MEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRLGLIPIIVDPR 147
F LIG+DA+IANAFRR LIAE+PT+AIE V I NNTSVIQDEVLAHRLGLIP +P
Sbjct: 64 ASFSLIGVDASIANAFRRTLIAEIPTVAIENVYIENNTSVIQDEVLAHRLGLIPFTGNPE 123
Query: 148 -----LFEYMSEND---TSNEKNTIVFKLHVLCERGGPRLTVKTNELKWLPNGSELPLET 199
L Y D S + NT+ +L + C R P+ S +T
Sbjct: 124 GIHNFLKWYRKPEDGGKGSFDYNTVQLRLRIECTRN--------------PDASPNEKDT 169
Query: 200 KPDSNPSSKPRTYTSFSSSQDLLPEFSN-NPIRPML-DITIARLGPGQEIELEAHAVKGI 257
N +S F S + FS + IRP+ DI IA+L PGQ IEL+ H KGI
Sbjct: 170 NVAFNHASVYAKDIEFVPSGRQVEFFSGEDAIRPVNPDILIAKLRPGQCIELDMHMHKGI 229
Query: 258 GKTHAKWSPVATAWYRMLPEIVLLEDVEDEDAEKLVKTCPVNVFDIEDI--------GS- 308
G HAK+SPVATA YR++P I + + +DAEK K P V IE + GS
Sbjct: 230 GADHAKFSPVATASYRLMPTITITRPILGQDAEKFAKCFPKGVIGIEKVTKKEAAVAGSG 289
Query: 309 -----GKKRATVAQPRACTLCRECLRCGEEWEKRVSIRRVKDHFI 348
G+K+A V T+ RECLR E++ +V + RV+DHFI
Sbjct: 290 YEGHEGEKKAVVKDAMKDTVSRECLRHA-EFDGKVKLGRVRDHFI 333
>gi|390597050|gb|EIN06450.1| RBP11-like subunits of RNA polymerase [Punctularia strigosozonata
HHB-11173 SS5]
Length = 379
Score = 202 bits (515), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 128/301 (42%), Positives = 171/301 (56%), Gaps = 10/301 (3%)
Query: 54 YSGAYASMGVDNSLQLDHFCNNFRVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPT 113
+ G Y ++S L F N +V+V RL++ +EFDL+G+DA+IANA RRILIAE+PT
Sbjct: 32 FPGHYPGKEEEHSWDLARFKKNLQVKVTRLSQRSVEFDLVGVDASIANAIRRILIAEVPT 91
Query: 114 MAIEKVLIANNTSVIQDEVLAHRLGLIPIIVDPRLFEYMS--ENDTSNEKNTIVFKLHVL 171
+AIE V + NNTSVI DEVL+HRLGL+P+ VDP L + +D + ++NTIVF+LHV
Sbjct: 92 IAIEHVYVWNNTSVIVDEVLSHRLGLVPLNVDPALLDERDPPPDDQATDRNTIVFRLHVA 151
Query: 172 CERGGPRLTVKTNELKWLPNGSELPLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIR 231
CER K + P + P E + S + P P
Sbjct: 152 CERKKKDSKAKGKGKEPQPVEEQHPDELYVNHEVLSGQLEWVPQGDQASYEPFIKKRPAP 211
Query: 232 PMLDITIARLGPGQEIELEAHAVKGIGKTHAKWSPVATAWYRMLPEIVLLED--VEDEDA 289
DI +A+L PGQEIE+E HAVK +GK HAK+ PVATA YR+LP I+L D V E A
Sbjct: 212 TNPDIVLAKLRPGQEIEMELHAVKSVGKDHAKFCPVATASYRLLPHIILNPDKPVPPEYA 271
Query: 290 EKLVKTCPVNVFDIEDIGSGKKRATVAQP--RACTLCRECLRCGEEWEKRVSIRRVKDHF 347
EK K V ++ K +V Q R T+ RE R E+E V +RRV+D+F
Sbjct: 272 EKFQKCFAPGVIKVD---PKTKAVSVDQKNVRKETMSREVFR-HPEFEGCVDLRRVRDYF 327
Query: 348 I 348
+
Sbjct: 328 L 328
>gi|405120194|gb|AFR94965.1| rpa42 [Cryptococcus neoformans var. grubii H99]
Length = 350
Score = 202 bits (515), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 128/323 (39%), Positives = 178/323 (55%), Gaps = 19/323 (5%)
Query: 28 LPPHIEFQRTRVQCNLDAPIHTENVMYSGAYASMGVDNSLQLDHFCNNFRVEVIRLTKDD 87
+P ++ R VQ + + G Y G D+S L F + V RLT
Sbjct: 1 MPSPLDNTRRHVQVFAERVGAVAGSEFPGHYP--GEDHSWNLQKFKQDLVASVQRLTPST 58
Query: 88 MEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRLGLIPIIVDPR 147
+EFDL+G+DA+IANA RR LIAE+PT+AIE+V + NNTS++QDEVL HR+GL+P+ +DPR
Sbjct: 59 IEFDLVGVDASIANALRRTLIAEVPTVAIEEVYVWNNTSIMQDEVLCHRVGLVPLKIDPR 118
Query: 148 LFEYM-SENDTSNEKNTIVFKLHVLCERGGPRLTVKTNELKWLPNGSELPLETKPDSNPS 206
Y S N +E +T+VF L V C+R R V +E P + DSN
Sbjct: 119 SLRYRPSANSQPHEHDTVVFDLRVRCDR---RPNVDRSETD--------PKKMYFDSNVY 167
Query: 207 SKPRTYTSFSSSQDLLPEFSNNPIRPML-DITIARLGPGQEIELEAHAVKGIGKTHAKWS 265
S + S D +F RP+ DI + +L PGQ+++L A KG+G HAK+S
Sbjct: 168 S---GMLKWVPSGDQKKKFKGKAPRPVNDDILLVKLRPGQQVDLHCFARKGVGADHAKFS 224
Query: 266 PVATAWYRMLPEIVLLEDVEDEDAEKLVKTCPVNVFDIEDIGSGKKRATVAQPRACTLCR 325
PVATA YR+LP I+L + E +K P V +IE SG+ + V PR T+ R
Sbjct: 225 PVATASYRLLPHIILRGPIPKEHQQKFKGCFPPGVIEIEKDESGEDQCVVKNPRKDTVSR 284
Query: 326 ECLRCGEEWEKRVSIRRVKDHFI 348
E LR E++ V + R++DHFI
Sbjct: 285 EVLR-HPEFQDLVQLARIRDHFI 306
>gi|409077914|gb|EKM78278.1| hypothetical protein AGABI1DRAFT_121405 [Agaricus bisporus var.
burnettii JB137-S8]
Length = 357
Score = 202 bits (514), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 126/327 (38%), Positives = 180/327 (55%), Gaps = 44/327 (13%)
Query: 36 RTRVQCNLDAPIHTENVMYSGAYASMGVDNSLQLDHFCNNFRVEVIRLTKDDMEFDLIGI 95
R VQ + + + + G Y G D+S L F + RVE+ RL+ +EFDL+G+
Sbjct: 8 RRLVQVGAERVSNVSSTDFPGHYP--GEDHSWNLQEFRRDLRVEIQRLSNRSIEFDLVGV 65
Query: 96 DAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRLGLIPIIVDPRLFEYMSEN 155
DA+IANAFRRI+IAE+PT+ IE V I NNTSVI DEVL+HRLGL+P+ VDP L ++ +
Sbjct: 66 DASIANAFRRIMIAEVPTICIELVYIWNNTSVIADEVLSHRLGLVPLNVDPALMQFKANL 125
Query: 156 DTSNEKNTIVFKLHVLCER--GGPRLT-----------VKTNELKWLPNGSELPL-ETKP 201
D++ + NTIVF+L + C R G P+ + V + L+W P G +L + E P
Sbjct: 126 DSATDHNTIVFELDITCTRNPGAPKASENPDELYINHEVLSGHLRWKPAGDQLTVFEGLP 185
Query: 202 DSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPMLDITIARLGPGQEIELEAHAVKGIGKTH 261
P+ NP +I +A+L PGQ + +E HA+KG+GK H
Sbjct: 186 APGPT---------------------NP-----NIVLAKLRPGQSVRMELHAIKGVGKDH 219
Query: 262 AKWSPVATAWYRMLPEIVLLEDVEDEDAEKLVKTCPVNVFDIEDIGSGKKRATVAQPRAC 321
AK+SPVATA YR+LP I + + + +EK K V I D +G R
Sbjct: 220 AKFSPVATASYRLLPHIKIKKSIPPSLSEKFQKCFSPGVVKI-DSRTGSASVDENNVRKD 278
Query: 322 TLCRECLRCGEEWEKRVSIRRVKDHFI 348
++ RE LR E+ V + RV+D+F+
Sbjct: 279 SVSREVLRH-PEFVDSVELSRVRDYFL 304
>gi|388582543|gb|EIM22847.1| RNA polymeras-like protein I subunit hRPA39, partial [Wallemia sebi
CBS 633.66]
Length = 362
Score = 202 bits (514), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 114/294 (38%), Positives = 161/294 (54%), Gaps = 40/294 (13%)
Query: 69 LDHFCNNFRVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVI 128
L+ F N V + +D++EFDLIG+D +IANA RR++IAE+PT+A+E V + NNTSV+
Sbjct: 38 LEAFKKNLTTHVNAVAEDEIEFDLIGVDPSIANALRRVMIAEVPTVAVENVFVFNNTSVM 97
Query: 129 QDEVLAHRLGLIPIIVDPRLFEYMSENDTSNEKNTIVFKLHVLCERGGP----------- 177
DEV+AHRLGL+PI+ D E + D+ N++NTIVF L V C R
Sbjct: 98 HDEVMAHRLGLVPILFDAERLEEFQKGDSPNDQNTIVFTLQVACTRKAKVAAGETDPDKI 157
Query: 178 --RLTVKTNELKWLPNGSELPLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPML- 234
V + + KW+P G Q P F++NP R
Sbjct: 158 YENHKVYSKDFKWVPQG-------------------------GQASDPLFTDNPPRVAYP 192
Query: 235 DITIARLGPGQEIELEAHAVKGIGKTHAKWSPVATAWYRMLPEIVLLEDVEDEDAEKLVK 294
+I I +L PGQ I+LE H VKG+G+ HAK+SP ATA YR+LP + L + ++ E AE
Sbjct: 193 EILITKLRPGQSIDLELHCVKGLGQDHAKFSPAATASYRLLPTVKLHQPIKSEHAELFAS 252
Query: 295 TCPVNVFDIEDIGSGKKRATVAQPRACTLCRECLRCGEEWEKRVSIRRVKDHFI 348
V ++ + G+K A PR T+ RE LR E++ V + R++DHFI
Sbjct: 253 CFSEGVVEVRENKKGEKEAHYVNPRKDTVSREVLR-HPEFDGVVELGRIRDHFI 305
>gi|167535426|ref|XP_001749387.1| hypothetical protein [Monosiga brevicollis MX1]
gi|163772253|gb|EDQ85908.1| predicted protein [Monosiga brevicollis MX1]
Length = 363
Score = 202 bits (514), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 125/329 (37%), Positives = 176/329 (53%), Gaps = 45/329 (13%)
Query: 36 RTRVQCNLDAPIHTENVMYSGAYASMGVDNSLQLDHFCNNFRVEVIRL--TKDDMEFDLI 93
R RV D +T + + G+Y G+D+S L+ +++V R+ ++ ++EFD+I
Sbjct: 9 RERVSLTKDRVDYTASTDFPGSYP--GIDDSWNLEAIKKKLKIDVTRIEDSEYELEFDII 66
Query: 94 GIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRLGLIPIIVDPRLFEYMS 153
G+DAAI N RRILIA+ PTMAIE V I NNTS++ DE+ AHRLGLIPI DPR F Y +
Sbjct: 67 GLDAAIVNTIRRILIADTPTMAIESVYIFNNTSMLPDELFAHRLGLIPIKADPRHFTYRA 126
Query: 154 ENDTS-NEKNTIVFKLHVLCER--GGP-----------RLTVKTNELKWLPNGSELPLET 199
++ + NTIVF L +C + P + + +L+W P G + +
Sbjct: 127 DDGGQPTDANTIVFNLKRVCTKKPNAPADATNPEDLYENAVIYSRDLEWAPQGQQEQVFG 186
Query: 200 KPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPMLDITIARLGPGQEIELEAHAVKGIGK 259
K FS D DI I ++ PGQE+ ++ KG+GK
Sbjct: 187 K------------NGFSVVYD--------------DIVIMKMRPGQEVNMQLFCEKGVGK 220
Query: 260 THAKWSPVATAWYRMLPEIVLLEDVEDEDAEKLVKTCPVNVFDIEDIGSGKKRATVAQPR 319
THAKWSPVATA YR++PEI+L E + A KL K V DI G+ A + PR
Sbjct: 221 THAKWSPVATASYRLMPEIILKEPIVGPLAHKLQKCFSPGVCDIVKNSKGEDEAKIVNPR 280
Query: 320 ACTLCRECLRCGEEWEKRVSIRRVKDHFI 348
A T+ RE R ++ +V + RV+DHFI
Sbjct: 281 ADTVSREVFR-HDDLRDKVELNRVRDHFI 308
>gi|58266722|ref|XP_570517.1| hypothetical protein [Cryptococcus neoformans var. neoformans
JEC21]
gi|134110920|ref|XP_775924.1| hypothetical protein CNBD3310 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|50258590|gb|EAL21277.1| hypothetical protein CNBD3310 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|57226750|gb|AAW43210.1| conserved hypothetical protein [Cryptococcus neoformans var.
neoformans JEC21]
Length = 350
Score = 202 bits (513), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 127/323 (39%), Positives = 178/323 (55%), Gaps = 19/323 (5%)
Query: 28 LPPHIEFQRTRVQCNLDAPIHTENVMYSGAYASMGVDNSLQLDHFCNNFRVEVIRLTKDD 87
+P ++ R VQ + + G Y G D+S L F + V RLT
Sbjct: 1 MPSSLDNTRRHVQVFAERVGAVAGSEFPGHYP--GEDHSWNLQKFKQDLVASVQRLTPST 58
Query: 88 MEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRLGLIPIIVDPR 147
+EFDL+G+DA+IANA RR LIAE+PT+AIE+V + NNTS++QDEVL HR+GL+P+ +DPR
Sbjct: 59 IEFDLVGVDASIANALRRTLIAEVPTVAIEEVYVWNNTSIMQDEVLCHRVGLVPLKIDPR 118
Query: 148 LFEYM-SENDTSNEKNTIVFKLHVLCERGGPRLTVKTNELKWLPNGSELPLETKPDSNPS 206
Y S N +E +T+VF L V C+R R V +E P + DSN
Sbjct: 119 SLRYRPSANSQPHEHDTVVFDLRVRCDR---RPNVDRSETD--------PKKMYFDSNVY 167
Query: 207 SKPRTYTSFSSSQDLLPEFSNNPIRPML-DITIARLGPGQEIELEAHAVKGIGKTHAKWS 265
S + S D +F RP+ DI + +L PGQ+++L A KG+G HAK+S
Sbjct: 168 S---GMLKWVPSGDQKKKFKGKAPRPVNDDILLVKLRPGQQVDLHCFARKGVGADHAKFS 224
Query: 266 PVATAWYRMLPEIVLLEDVEDEDAEKLVKTCPVNVFDIEDIGSGKKRATVAQPRACTLCR 325
PVATA YR+LP I+L + E +K P V +IE +G+ + V PR T+ R
Sbjct: 225 PVATASYRLLPHIILRGPIPKEHQQKFKGCFPPGVIEIEKDENGEDQCVVKNPRKDTVSR 284
Query: 326 ECLRCGEEWEKRVSIRRVKDHFI 348
E LR E++ V + R++DHFI
Sbjct: 285 EVLR-HPEFQDLVQLARIRDHFI 306
>gi|426193914|gb|EKV43846.1| hypothetical protein AGABI2DRAFT_209410 [Agaricus bisporus var.
bisporus H97]
Length = 357
Score = 201 bits (512), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 127/326 (38%), Positives = 181/326 (55%), Gaps = 42/326 (12%)
Query: 36 RTRVQCNLDAPIHTENVMYSGAYASMGVDNSLQLDHFCNNFRVEVIRLTKDDMEFDLIGI 95
R VQ + + + + G Y G D+S L F RVE+ RL+ +EFDL+G+
Sbjct: 8 RRLVQVGAERVSNVSSTDFPGHYP--GEDHSWNLQDFRRGLRVEIQRLSNRSIEFDLVGV 65
Query: 96 DAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRLGLIPIIVDPRLFEYMSEN 155
DA+IANAFRRI+IAE+PT+ IE V I NNTSVI DEVL+HRLGL+P+ VDP L ++ +
Sbjct: 66 DASIANAFRRIMIAEVPTICIELVYIWNNTSVIADEVLSHRLGLVPLNVDPALMQFKANL 125
Query: 156 DTSNEKNTIVFKLHVLCER--GGPRLT-----------VKTNELKWLPNGSELPLETKPD 202
D++ + NTIVF+L + C R G P+++ V + L+W P G +L
Sbjct: 126 DSATDHNTIVFELDITCTRNPGAPKVSENPDELYINHEVLSGHLRWKPAGDQL------- 178
Query: 203 SNPSSKPRTYTSFSSSQDLLPEFSNNPIRPMLDITIARLGPGQEIELEAHAVKGIGKTHA 262
T F LP + P+ P +I +A+L PGQ + +E HA+KG+GK HA
Sbjct: 179 ----------TVFEG----LP--APGPMNP--NIVLAKLRPGQSVRMELHAIKGVGKDHA 220
Query: 263 KWSPVATAWYRMLPEIVLLEDVEDEDAEKLVKTCPVNVFDIEDIGSGKKRATVAQPRACT 322
K+SPVATA YR+LP I + + + +EK K V I D +G R +
Sbjct: 221 KFSPVATASYRLLPHIKIKKPIPPSLSEKFQKCFSPGVVKI-DSRTGSASVDENNVRKDS 279
Query: 323 LCRECLRCGEEWEKRVSIRRVKDHFI 348
+ RE LR E+ V + RV+D+F+
Sbjct: 280 VSREVLRH-PEFVDSVELSRVRDYFL 304
>gi|300175011|emb|CBK20322.2| unnamed protein product [Blastocystis hominis]
Length = 366
Score = 201 bits (511), Expect = 5e-49, Method: Compositional matrix adjust.
Identities = 123/295 (41%), Positives = 169/295 (57%), Gaps = 41/295 (13%)
Query: 69 LDHFCNNFRVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVI 128
LD N ++ ++ + + + F+L+G+DA+IANA RR+LIAE+PTMAI V + NNTSV+
Sbjct: 29 LDGLDENLKINILSQSDEQVVFELVGVDASIANALRRVLIAEVPTMAISTVFMNNNTSVM 88
Query: 129 QDEVLAHRLGLIPIIVDPRLFEYM---SENDTS----NEKNTIVFKLHVLCERGGPRLTV 181
QDEVL HRLGLIPI D F+Y+ EN + +KN++ F L V C P L+
Sbjct: 89 QDEVLCHRLGLIPIKADANDFDYICPPGENGHNRSDFTDKNSLKFNLRVTC----PSLS- 143
Query: 182 KTNELKWLPNGSELPLETKPDSNPSSKPRTYTSFSSSQDL--------LPEFSNNPIRPM 233
EL+ N + T +S S +L LPE +
Sbjct: 144 ---ELQKAANNRNV--------------EYLTVYSQSLELEKLGRQLDLPEGQIGLVHD- 185
Query: 234 LDITIARLGPGQEIELEAHAVKGIGKTHAKWSPVATAWYRMLPEIVLLEDVEDEDAEKLV 293
DI + +L PGQ I+LE +A KG+G+ HAKWSPV TA YRM P I + + EDAE++
Sbjct: 186 -DIILTKLAPGQAIDLECYATKGVGEDHAKWSPVCTAVYRMRPSIRFPKPLVGEDAERMK 244
Query: 294 KTCPVNVFDIEDIGSGKKRATVAQPRACTLCRECLRCGEEWEKRVSIRRVKDHFI 348
+ CP+ VFDIEDIG G+K VA CT+CREC+R E EK V + +++ FI
Sbjct: 245 QICPMGVFDIEDIG-GEKTLHVAHDLNCTMCRECIRLPENREK-VQLGVIRNDFI 297
>gi|190348712|gb|EDK41218.2| conserved hypothetical protein [Meyerozyma guilliermondii ATCC
6260]
Length = 333
Score = 201 bits (510), Expect = 5e-49, Method: Compositional matrix adjust.
Identities = 125/322 (38%), Positives = 177/322 (54%), Gaps = 36/322 (11%)
Query: 32 IEFQRTRVQCNLDAPIHTENVMYSGAYASMGVDNSLQLDHFCNNFRVEVIRLTKDDMEFD 91
IE+ R + D P H+ N D+S ++ F +NF + + LT+ FD
Sbjct: 7 IEYNRVTNTTSTDFPGHSSNE-----------DHSWDIEKFKDNFEINISHLTERTANFD 55
Query: 92 LIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRLGLIPIIVDPRLFEY 151
LI ID ++ANAFRRI+I+E+P++A E V I NNTSVIQDEVLAHR+GLIP+ VDP L +
Sbjct: 56 LINIDTSVANAFRRIMISEVPSVAAESVYIFNNTSVIQDEVLAHRIGLIPLKVDPDLLSW 115
Query: 152 M----SENDTSNEKNTIVFKLHVLCERGGPRLTVKTNELKWLPNGSELPLETKPDSNPSS 207
+ E + ++NTIV L + C + P GS P + +++ +
Sbjct: 116 VDPAQDEKEKFTDENTIVLSLDIACTKN-----------PHPPAGSTDPKDLYRNAHVYA 164
Query: 208 KPRTYTSFSSSQDLLPEFSNNPIRPM-LDITIARLGPGQEIELEAHAVKGIGKTHAKWSP 266
+ + DL F NNP+ P DI IA+L PGQEI L AH + GIG HAK+SP
Sbjct: 165 RDLKFEPQGRQVDL---FKNNPVVPTDPDILIAKLRPGQEISLRAHCILGIGSDHAKFSP 221
Query: 267 VATAWYRMLPEIVLLEDVEDEDAEKLVKTCPVNVFDIEDIGSGKKRATVAQPRACTLCRE 326
V+TA YR++ +I + E + E A++ K P V IE+ A V R T+ RE
Sbjct: 222 VSTASYRLMSDIKITEPITGESAKRFQKCFPSGVIGIEN-----DTAFVKDARKDTVSRE 276
Query: 327 CLRCGEEWEKRVSIRRVKDHFI 348
LR EE+ +V + R++DHFI
Sbjct: 277 VLR-HEEFNGKVKLGRIRDHFI 297
>gi|145517526|ref|XP_001444646.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124412068|emb|CAK77249.1| unnamed protein product [Paramecium tetraurelia]
Length = 316
Score = 201 bits (510), Expect = 7e-49, Method: Compositional matrix adjust.
Identities = 113/295 (38%), Positives = 156/295 (52%), Gaps = 45/295 (15%)
Query: 67 LQLDHFCNNFRVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTS 126
+ F + + ++ T + + F++I IDA IAN+ RRI+IAE+PTMAI KV + NTS
Sbjct: 22 FNIKQFQRDLEINILSKTDEKIVFEIINIDAPIANSLRRIMIAEIPTMAIHKVQVIQNTS 81
Query: 127 VIQDEVLAHRLGLIPIIVDPRLFEYMSENDTSNEKNTIVFKLHVLCERG----------- 175
VI DEVLAHRLGLIPII DP F + + NE N+I F L+ CE+
Sbjct: 82 VIPDEVLAHRLGLIPIIADPLQFVEKDDQEEYNELNSIDFTLYAKCEKKPNSKQDDPIEQ 141
Query: 176 -GPRLTVKTNELKWLPNGSELPLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPM- 233
TV ++ L W P G + L F+ NPIRP+
Sbjct: 142 QYTNTTVHSSSLIWQPKGQQAKL---------------------------FAANPIRPVH 174
Query: 234 LDITIARLGPGQEIELEAHAVKGIGKTHAKWSPVATAWYRMLPEIVLLEDVEDEDAEKLV 293
+I IA+L QE+ L KG+GK HAKWSPV TA+Y+++P I + ++ + EKL
Sbjct: 175 SNIIIAKLRENQELNLRLICEKGVGKRHAKWSPVCTAFYKLMPSITIKNQLDAQRQEKLA 234
Query: 294 KTCPVNVFDIEDIGSGKKRATVAQPRACTLCRECLRCGEEWEKRVSIRRVKDHFI 348
CP+ VF G + V PR CT CREC+R +EK V + ++ +HFI
Sbjct: 235 SICPMKVF-----GIKGNQIKVVNPRNCTTCRECVREANGFEKDVELNKIDNHFI 284
>gi|225716742|gb|ACO14217.1| DNA-directed RNA polymerases I and III subunit RPAC1 [Esox lucius]
Length = 263
Score = 200 bits (508), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 112/240 (46%), Positives = 151/240 (62%), Gaps = 18/240 (7%)
Query: 47 IHTENVMYSGAYASMGVDNSLQLDHFCNNFRVEVIRLTKDDMEFDLIGIDAAIANAFRRI 106
+HT + Y G Y G D++ L F NFR++V+++ + MEFD++GIDA+IANAFRRI
Sbjct: 25 VHTTD--YPGNYP--GYDDTWSLQKFQKNFRIDVVQMDETCMEFDMVGIDASIANAFRRI 80
Query: 107 LIAELPTMAIEKVLIANNTSVIQDEVLAHRLGLIPIIVDPRLFEYMSEND-TSNEKNTIV 165
L+AE+PTMA+EKV I NNTS+IQDEVLA RLGLIPI DPRLFEY + D E +TI
Sbjct: 81 LLAEVPTMAVEKVFIYNNTSIIQDEVLAQRLGLIPIKADPRLFEYRNAGDEEGTEIDTIQ 140
Query: 166 FKLHVLCERGGPRLTVKTNELKWLPNGSELPLETKPDSNPSSKPRTYTSFSSSQDLLPEF 225
+L + C R S P E + SK T+ + D++ +
Sbjct: 141 LQLKIKCTRN-----------HQATKDSADPQELYLNHMVYSKDMTWVPIGNQADVVADA 189
Query: 226 SNNPIRPMLDITIARLGPGQEIELEAHAVKGIGKTHAKWSPVATAWYRMLPEIVLLEDVE 285
+ P+ DI +A+L PGQE+++ H VKGIG+ HAK+SPVATA YR+LPEI L++ VE
Sbjct: 190 NIGPVHG--DILLAKLRPGQELDIVMHCVKGIGQDHAKFSPVATASYRLLPEITLMKTVE 247
>gi|378727237|gb|EHY53696.1| DNA-directed RNA Polymerase III subunit C5 [Exophiala dermatitidis
NIH/UT8656]
Length = 373
Score = 200 bits (508), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 134/347 (38%), Positives = 180/347 (51%), Gaps = 57/347 (16%)
Query: 35 QRTRVQCNLDAPIHTENVMYSGAYASMGVDNSLQLDHFCNNFRVEVIRLTKDDMEFDLIG 94
+R V N + + + + G +A G DNS L F +N +V+ + D+ F LIG
Sbjct: 13 RRKLVGINPETVTNITSTDFPGHHA--GEDNSWSLPKFKDNLKVQFHQNEADEATFSLIG 70
Query: 95 IDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRLGLIPI------------ 142
+DAAIANAFRRILIAE+PT+AIEKV + NNTSVI DEVLAHRLGLIP+
Sbjct: 71 VDAAIANAFRRILIAEVPTLAIEKVYVQNNTSVIADEVLAHRLGLIPLKGNIEGLKWLKW 130
Query: 143 IVDPRLFEYMSENDTSNEKNTIVFKLHVLCERGGPRLTVKTNELKWLPNGSELPLETKPD 202
+D E+ E + NT+V LHV CER P K
Sbjct: 131 FIDSNP-EFGFEGTGRADYNTVVLHLHVRCERN--------------------PHADKNA 169
Query: 203 SNPSSKPRTYTSFSSSQDLLPE------FSNNPIRPML-DITIARLGPGQEIELEAHAVK 255
+ P K T +S P+ F + PI P+ DI IA+L PGQEI++ HA
Sbjct: 170 TEPEEKYINSTVYSRHIQWEPQGQQQERFKDGPIEPVSPDILIAKLRPGQEIDMVLHAHL 229
Query: 256 GIGKTHAKWSPVATAWYRMLPEIVLLEDVEDEDAEKLVKTCPVNVFDIEDIG-------- 307
GIG HAK+SPVATA YR++P I + + + DA K K P V D++ +
Sbjct: 230 GIGADHAKFSPVATATYRLMPTITITKPILGADARKFQKCFPPGVIDLDRVTPSDAASDN 289
Query: 308 ------SGKKRATVAQPRACTLCRECLRCGEEWEKRVSIRRVKDHFI 348
G ++A V P T+ RECLR +E++ +V + RV+DHFI
Sbjct: 290 PAYHGREGDEKAVVKDPMRDTVSRECLRH-DEFKDKVKLGRVQDHFI 335
>gi|289742757|gb|ADD20126.1| RNA polymerase I and III subunit rPA40/rPC40 [Glossina morsitans
morsitans]
Length = 330
Score = 199 bits (506), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 116/301 (38%), Positives = 167/301 (55%), Gaps = 50/301 (16%)
Query: 64 DNSLQLDHFCNNFRVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIAN 123
D+ ++ F F++ V+R +++EFD++G+ IANAFRR++++E+P+MAIEKV I N
Sbjct: 28 DDPFDIESFKKKFKIIVVRYQGNELEFDMVGVHPGIANAFRRLMLSEVPSMAIEKVYIHN 87
Query: 124 NTSVIQDEVLAHRLGLIPIIVDPRLFEYMS-ENDTSNEKNTIVFKLHVLCERGGPRLTVK 182
NTS+IQDEVLAHRLGLIP+ DPRLFEY E+D E++T+ F+L V C R R VK
Sbjct: 88 NTSIIQDEVLAHRLGLIPLKADPRLFEYRGDESDQGTEQDTLDFELKVKCSR---RKDVK 144
Query: 183 ---------------TNELKWLPNGSELPLETKPDSNPSSKPRTYTSFSSSQDLLPEFSN 227
+ ++KWLP G + + ++ D P
Sbjct: 145 ESSNFDSIYKNHKIYSGQIKWLPKGKQAQIYSESDVGPIDD------------------- 185
Query: 228 NPIRPMLDITIARLGPGQEIELEAHAVKGIGKTHAKWSPVATAWYRMLPEIVLLEDVEDE 287
DI I ++ PG E+++ AVKGIGK HAK+SPVATA+YR+LPE+ L +DV +
Sbjct: 186 -------DILITQMRPGHELDIRLAAVKGIGKDHAKFSPVATAFYRLLPEVKLKKDVVGK 238
Query: 288 DAEKLVKTCPVNVFDIEDIGSGKKRATVAQPRACTLCRECLRCGEEWEKRVSIRRVKDHF 347
DA L K V +++ RA V R T R R + V + R++DH+
Sbjct: 239 DAFLLQKCFSPGVIGLDE----NDRAYVKNARYDTCSRNVYRY-PQLADVVEMARIRDHY 293
Query: 348 I 348
I
Sbjct: 294 I 294
>gi|146412650|ref|XP_001482296.1| conserved hypothetical protein [Meyerozyma guilliermondii ATCC
6260]
Length = 333
Score = 199 bits (506), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 125/322 (38%), Positives = 177/322 (54%), Gaps = 36/322 (11%)
Query: 32 IEFQRTRVQCNLDAPIHTENVMYSGAYASMGVDNSLQLDHFCNNFRVEVIRLTKDDMEFD 91
IE+ R + D P H+ N D+S ++ F +NF + + LT+ FD
Sbjct: 7 IEYNRVTNTTSTDFPGHSSNE-----------DHSWDIEKFKDNFEINISHLTERTANFD 55
Query: 92 LIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRLGLIPIIVDPRLFEY 151
LI ID ++ANAFRRI+I+E+P++A E V I NNTSVIQDEVLAHR+GLIP+ VDP L +
Sbjct: 56 LINIDTSVANAFRRIMISEVPSVAAESVYIFNNTSVIQDEVLAHRIGLIPLKVDPDLLSW 115
Query: 152 M----SENDTSNEKNTIVFKLHVLCERGGPRLTVKTNELKWLPNGSELPLETKPDSNPSS 207
+ E + ++NTIV L + C + P GS P + +++ +
Sbjct: 116 VDPAQDEKEKFTDENTIVLSLDIACTKN-----------PHPPAGSTDPKDLYRNAHVYA 164
Query: 208 KPRTYTSFSSSQDLLPEFSNNPIRPM-LDITIARLGPGQEIELEAHAVKGIGKTHAKWSP 266
+ + DL F NNP+ P DI IA+L PGQEI L AH + GIG HAK+SP
Sbjct: 165 RDLKFEPQGRQVDL---FKNNPVVPTDPDILIAKLRPGQEISLRAHCILGIGSDHAKFSP 221
Query: 267 VATAWYRMLPEIVLLEDVEDEDAEKLVKTCPVNVFDIEDIGSGKKRATVAQPRACTLCRE 326
V+TA YR++ +I + E + E A++ K P V IE+ A V R T+ RE
Sbjct: 222 VSTASYRLMSDIKITEPITGELAKRFQKCFPSGVIGIEN-----DTAFVKDARKDTVSRE 276
Query: 327 CLRCGEEWEKRVSIRRVKDHFI 348
LR EE+ +V + R++DHFI
Sbjct: 277 VLR-HEEFNGKVKLGRIRDHFI 297
>gi|320582291|gb|EFW96508.1| RNA polymerase III (C) subunit [Ogataea parapolymorpha DL-1]
Length = 335
Score = 199 bits (505), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 131/326 (40%), Positives = 180/326 (55%), Gaps = 41/326 (12%)
Query: 31 HIEFQRTRVQCNLDAPIHTENVMYSGAYASMGVDNSLQLDHFCNNFRVEVIRLTKDDMEF 90
+IE R D P ++ N G YA L++F NF++ + LT+ F
Sbjct: 6 NIEHDRVSNTTATDFPGYSAN----GEYA-------WDLENFKKNFQLNISYLTQRTANF 54
Query: 91 DLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRLGLIPIIVDPRLFE 150
DL+G+D +IANAFRRI+IAE+P++A E V I NNTSVIQDEVLAHR+GL+P+ VDP +
Sbjct: 55 DLVGLDTSIANAFRRIMIAEVPSVAAEYVYIFNNTSVIQDEVLAHRIGLVPLKVDPDMLT 114
Query: 151 YMSEN----DTSNEKNTIVFKLHVLCERGGPRLTVKTNELKWLPN---GSELPLETKPDS 203
++ N D ++NTIV L V C + PN G+ P +S
Sbjct: 115 WIDPNAEEEDKFTDENTIVLSLDVACTKN--------------PNAVPGNNDPENLYRNS 160
Query: 204 NPSSKPRTYTSFSSSQDLLPEFSNNPIRPM-LDITIARLGPGQEIELEAHAVKGIGKTHA 262
N ++ F + + +F+N P+ P DI IA+L P QEI L H V GIG HA
Sbjct: 161 NVYARD---LKFEPNGRQVTQFANCPVVPCDPDILIAKLRPNQEISLRVHCVLGIGADHA 217
Query: 263 KWSPVATAWYRMLPEIVLLEDVEDEDAEKLVKTCPVNVFDIEDIGSGKKRATVAQPRACT 322
K+SPV+TA YR+LP I +LE + +DA K K P V I+ G+ A VA R T
Sbjct: 218 KFSPVSTASYRLLPTIDILEPITGDDAVKFQKCFPSGVIGIDSNGA----AYVADARKDT 273
Query: 323 LCRECLRCGEEWEKRVSIRRVKDHFI 348
+ RE LR +E+E +V + R +DHFI
Sbjct: 274 VSREVLR-HKEFEGKVKLGRKRDHFI 298
>gi|440635104|gb|ELR05023.1| hypothetical protein GMDG_01594 [Geomyces destructans 20631-21]
Length = 375
Score = 199 bits (505), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 138/354 (38%), Positives = 189/354 (53%), Gaps = 56/354 (15%)
Query: 29 PPHIEFQRTRV-QCNLDAPIHTENVMYSGAYASMGVDNSLQLDHFCNNFRVEVIRLTKDD 87
P E QR +V NL+ + + G YA G D+S LD F N +++ T+ +
Sbjct: 6 PSQEELQRRKVVGINLETVDDVTSTDFPGHYA--GEDHSWDLDLFRKNLKIQFHHNTQFN 63
Query: 88 MEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRLGLIPIIVDPR 147
F + GIDA++ANAFRRIL+AE+PT+AIE V + NNTSVIQDEVLAHRLGL+P+ +
Sbjct: 64 ASFSISGIDASVANAFRRILLAEIPTLAIEYVFMNNNTSVIQDEVLAHRLGLVPLKGGRK 123
Query: 148 -LFEYMSENDTSN-----------EKNTIVFKLHVLCERGGPRLTVKTNELKWLPN---- 191
L E+M +N + NTI KL + C R +T+ K N
Sbjct: 124 GLLEFMRWFGKANEEEGTEAGEAFDYNTITLKLQIACTRNPDAAPGETDSNKLYINSAVH 183
Query: 192 GSEL---PLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPMLDITIARLGPGQEIE 248
S++ P+ +P+ F S D + NP DI IA+L PGQ I+
Sbjct: 184 ASDIVFEPVGRQPE------------FFSGDDTIT--VTNP-----DILIAKLRPGQCID 224
Query: 249 LEAHAVKGIGKTHAKWSPVATAWYRMLPEIVLLEDVEDEDAEKLVKTCPVNVFDIEDI-- 306
L+ HA+KGIG HAK+SPVATA YR+LP I +L+ + DAEK K P V E +
Sbjct: 225 LDMHAIKGIGADHAKFSPVATASYRLLPTITILKPILGNDAEKFAKCFPKGVIGFEKVTK 284
Query: 307 ------GS------GKKRATVAQPRACTLCRECLRCGEEWEKRVSIRRVKDHFI 348
GS G+K+A V T+ RECLR EE++ +V + R++DHFI
Sbjct: 285 EEASTPGSGYEGHAGEKKAVVKDTMKDTVSRECLRH-EEFQGKVKLGRIRDHFI 337
>gi|321257697|ref|XP_003193678.1| DNA-directed RNA polymerases I and III 40 kDa polypeptide (AC40)
[Cryptococcus gattii WM276]
gi|317460148|gb|ADV21891.1| DNA-directed RNA polymerases I and III 40 kDa polypeptide (AC40)
[Cryptococcus gattii WM276]
Length = 350
Score = 198 bits (504), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 119/309 (38%), Positives = 166/309 (53%), Gaps = 43/309 (13%)
Query: 54 YSGAYASMGVDNSLQLDHFCNNFRVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPT 113
+ G Y G D+S L F + V RLT +EFDL+G+DA+IANA RR LIAE+PT
Sbjct: 27 FPGHYP--GEDHSWNLQKFKQDLVTSVQRLTPSTIEFDLVGVDASIANALRRTLIAEVPT 84
Query: 114 MAIEKVLIANNTSVIQDEVLAHRLGLIPIIVDPRLFEYM-SENDTSNEKNTIVFKLHVLC 172
+AIE+V + NNTS++QDEVL HR+GL+P+ +DPR Y S N +E +T+VF L V C
Sbjct: 85 VAIEEVYVWNNTSIMQDEVLCHRVGLVPLKIDPRSLRYRPSANSQPHEHDTVVFDLRVRC 144
Query: 173 ER--------GGPR-----LTVKTNELKWLPNGSELPLETKPDSNPSSKPRTYTSFSSSQ 219
+R P+ V + LKW+P+G + P +
Sbjct: 145 DRRPNVDRSEKDPKKMYFDSNVYSGMLKWVPSGDQKKKFKGKAPKPVND----------- 193
Query: 220 DLLPEFSNNPIRPMLDITIARLGPGQEIELEAHAVKGIGKTHAKWSPVATAWYRMLPEIV 279
DI + +L PGQ+++L A KG+G HAK+SPVATA YR+LP I+
Sbjct: 194 ---------------DILLVKLRPGQQVDLHCFARKGVGADHAKFSPVATASYRLLPHII 238
Query: 280 LLEDVEDEDAEKLVKTCPVNVFDIEDIGSGKKRATVAQPRACTLCRECLRCGEEWEKRVS 339
L + E +K P V +IE SG+ + V PR T+ RE LR E++ V
Sbjct: 239 LRGPIPKEHQQKFKGCFPPGVIEIEKDESGEDQCVVKNPRKDTVSREVLR-HPEFQDIVQ 297
Query: 340 IRRVKDHFI 348
+ R++DHFI
Sbjct: 298 LARIRDHFI 306
>gi|320165910|gb|EFW42809.1| polymerase I polypeptide C [Capsaspora owczarzaki ATCC 30864]
Length = 414
Score = 198 bits (504), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 126/331 (38%), Positives = 169/331 (51%), Gaps = 47/331 (14%)
Query: 36 RTRVQCNLDAPIHTENVMYSGAYASMGVDNSLQLDHFCNNFRVEVIRLTKDD---MEFDL 92
R+RV D + ++ + + + + F FR+E I DD + FD+
Sbjct: 69 RSRVVLEADRVENAASIDFPANFPEEAAELAWDFGKFAAGFRIERIETDPDDPMAVTFDM 128
Query: 93 IGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRLGLIPIIVDPRLFEYM 152
+G+DAAIANAFRRILIAE+PTMAIE V NNTS+I DE LAHRLGL+PI DPR FE
Sbjct: 129 VGVDAAIANAFRRILIAEVPTMAIETVFFTNNTSIIHDEALAHRLGLVPIRADPRYFETR 188
Query: 153 SENDT-SNEKNTIVFKLHVLCER---GGPRLT----------VKTNELKWLPNGSELPLE 198
DT + ++NT+VF L V C + P T V ++++ W+P G
Sbjct: 189 DTPDTQATDRNTLVFTLDVKCTKNPHASPNATDDTEKYINSRVLSSDIVWVPKG------ 242
Query: 199 TKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPMLD-ITIARLGPGQEIELEAHAVKGI 257
D +F + PI P+ D I IA+L PGQ + E H +K I
Sbjct: 243 ---------------------DQEAQFQDAPIAPVHDDILIAKLRPGQAVACEMHCIKSI 281
Query: 258 GKTHAKWSPVATAWYRMLPEIVLLEDVEDEDAEKLVKTCPVNVFDIEDIGSGKKRATVAQ 317
G+ HAK+SPV TA YR+LPEI+L V +DA L K + + +G A V
Sbjct: 282 GRDHAKFSPVGTASYRLLPEIILTRPVTGDDAYLLQKCFSPGTIGVRN-ENGVPTAYVID 340
Query: 318 PRACTLCRECLRCGEEWEKRVSIRRVKDHFI 348
R T RE R E V +RRV+DHF+
Sbjct: 341 ARRDTCSREIFR-HERLASAVKMRRVRDHFL 370
>gi|401884851|gb|EJT48989.1| hypothetical protein A1Q1_01900 [Trichosporon asahii var. asahii
CBS 2479]
Length = 356
Score = 198 bits (504), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 121/310 (39%), Positives = 172/310 (55%), Gaps = 52/310 (16%)
Query: 54 YSGAYASMGVDNSLQLDHFCNNFRVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPT 113
+ G Y G D+S LD F RLT +EFDL+G+DA+IAN+ RR++IAE+PT
Sbjct: 43 FPGHYP--GEDHSWNLDKFKE-------RLTPSTVEFDLVGVDASIANSLRRVMIAEVPT 93
Query: 114 MAIEKVLIANNTSVIQDEVLAHRLGLIPIIVDPRLFEYMSENDTSN-EKNTIVFKLHVLC 172
+AIE V + NNTS++QDEVLAHR+GL+P+ +DPR ++ N ++ E +T VF L V C
Sbjct: 94 VAIEDVYVWNNTSIMQDEVLAHRVGLVPLKIDPRTLDFKPSNYSAPMENDTHVFDLRVKC 153
Query: 173 ER---GGPRLT----------VKTNELKWLPNGSELPLETKPDSNPSSKPRTYTSFSSSQ 219
+R P T V T +KW+P+G + SK
Sbjct: 154 DRRRDAAPGETDPKKLYYDSNVYTGMMKWVPSGQQ-----------KSK----------- 191
Query: 220 DLLPEFSNNPIRPML-DITIARLGPGQEIELEAHAVKGIGKTHAKWSPVATAWYRMLPEI 278
+ RP+L DI + +L PGQ ++L A KG+G HAK+SPVATA YR+LP I
Sbjct: 192 -----YKGKEPRPVLDDILLVKLRPGQMVDLHCFARKGVGADHAKYSPVATASYRLLPHI 246
Query: 279 VLLEDVEDEDAEKLVKTCPVNVFDIEDIGSGKKRATVAQPRACTLCRECLRCGEEWEKRV 338
+L E + ED EK V ++E G ++ V PR T+ RE LR +E++ +V
Sbjct: 247 ILREPIPLEDQEKFKSCFAPGVIELEKDADGNQQVVVKNPRKDTVSREVLRH-KEFQDKV 305
Query: 339 SIRRVKDHFI 348
+ R++DHFI
Sbjct: 306 ELARIRDHFI 315
>gi|448091116|ref|XP_004197249.1| Piso0_004496 [Millerozyma farinosa CBS 7064]
gi|448095598|ref|XP_004198280.1| Piso0_004496 [Millerozyma farinosa CBS 7064]
gi|359378671|emb|CCE84930.1| Piso0_004496 [Millerozyma farinosa CBS 7064]
gi|359379702|emb|CCE83899.1| Piso0_004496 [Millerozyma farinosa CBS 7064]
Length = 335
Score = 198 bits (503), Expect = 4e-48, Method: Compositional matrix adjust.
Identities = 122/322 (37%), Positives = 176/322 (54%), Gaps = 35/322 (10%)
Query: 32 IEFQRTRVQCNLDAPIHTENVMYSGAYASMGVDNSLQLDHFCNNFRVEVIRLTKDDMEFD 91
+E+ R + D P ++ N YS ++ F + F + + +++ FD
Sbjct: 8 VEYNRVTNTSSTDFPGYSSNADYS-----------WNIEKFKDTFDINISHISERSANFD 56
Query: 92 LIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRLGLIPIIVDPRLFEY 151
L+ +D +IANAFRRI+IAE+P++A E++ I NNTSVIQDEVLAHR+GL+P+ VDP L +
Sbjct: 57 LVHVDTSIANAFRRIMIAEVPSVAAEQIYIFNNTSVIQDEVLAHRIGLVPLKVDPDLLSW 116
Query: 152 ----MSENDTSNEKNTIVFKLHVLCERGGPRLTVKTNELKWLPNGSELPLETKPDSNPSS 207
+ E D ++NTIV L V C + P GS P E +S+ +
Sbjct: 117 VDPTVDEKDRFTDENTIVLSLDVSCSKN-----------PHAPQGSTDPKELYRNSHVYA 165
Query: 208 KPRTYTSFSSSQDLLPEFSNNPIRPM-LDITIARLGPGQEIELEAHAVKGIGKTHAKWSP 266
K + ++ F NNP+ P +I +A+L PGQEI L AH + GIG HAK+SP
Sbjct: 166 KDLKFEPQGRQVEI---FKNNPVVPTDPNILLAKLRPGQEISLRAHCILGIGSDHAKFSP 222
Query: 267 VATAWYRMLPEIVLLEDVEDEDAEKLVKTCPVNVFDIEDIGSGKKRATVAQPRACTLCRE 326
VATA YR++P I + E ++ E A+K K P V I + G A V PR T+ RE
Sbjct: 223 VATATYRLMPVIDITEPIKGEQAKKFQKCFPSGVIGINEEG----EAFVKDPRKDTVSRE 278
Query: 327 CLRCGEEWEKRVSIRRVKDHFI 348
LR E+ +V + R +DHFI
Sbjct: 279 VLR-HEDLSNKVKLGRKRDHFI 299
>gi|145518624|ref|XP_001445184.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124412628|emb|CAK77787.1| unnamed protein product [Paramecium tetraurelia]
Length = 316
Score = 198 bits (503), Expect = 4e-48, Method: Compositional matrix adjust.
Identities = 113/295 (38%), Positives = 155/295 (52%), Gaps = 45/295 (15%)
Query: 67 LQLDHFCNNFRVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTS 126
+ F + + ++ T + + F++I IDA IAN+ RRI+IAE+PTMAI KV + NTS
Sbjct: 22 FNIKQFQRDLEINILSKTDEKIVFEIINIDAPIANSLRRIMIAEIPTMAIHKVQVIQNTS 81
Query: 127 VIQDEVLAHRLGLIPIIVDPRLFEYMSENDTSNEKNTIVFKLHVLCERG----------- 175
VI DEVLAHRLGLIPII DP F + + NE N+I F L CE+
Sbjct: 82 VIPDEVLAHRLGLIPIIADPLQFIEKDDQEEYNELNSIDFTLVAKCEKKPNSKHDDPIEQ 141
Query: 176 -GPRLTVKTNELKWLPNGSELPLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPM- 233
TV ++ L W P G + L F+ NPIRP+
Sbjct: 142 QYTNTTVHSSSLIWQPKGQQAKL---------------------------FAANPIRPVH 174
Query: 234 LDITIARLGPGQEIELEAHAVKGIGKTHAKWSPVATAWYRMLPEIVLLEDVEDEDAEKLV 293
+I IA+L QE+ L KG+GK HAKWSPV TA+Y+++P I + ++ + EKL
Sbjct: 175 SNIIIAKLRENQELNLRLICEKGVGKRHAKWSPVCTAFYKLMPSITIKNQLDAQRQEKLA 234
Query: 294 KTCPVNVFDIEDIGSGKKRATVAQPRACTLCRECLRCGEEWEKRVSIRRVKDHFI 348
CP+ VF G + V PR CT CREC+R +EK V + ++ +HFI
Sbjct: 235 SLCPMKVF-----GVKGNQIKVVNPRNCTTCRECVREANGFEKDVELNKIDNHFI 284
>gi|295663793|ref|XP_002792449.1| DNA-directed RNA polymerases I and III subunit RPAC1
[Paracoccidioides sp. 'lutzii' Pb01]
gi|226279119|gb|EEH34685.1| DNA-directed RNA polymerases I and III subunit RPAC1
[Paracoccidioides sp. 'lutzii' Pb01]
Length = 380
Score = 197 bits (501), Expect = 6e-48, Method: Compositional matrix adjust.
Identities = 131/313 (41%), Positives = 178/313 (56%), Gaps = 39/313 (12%)
Query: 62 GVDNSLQLDHFCNNFRVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLI 121
G ++ ++ F NN V + + F LIG+DA+IANAFRRILIAE+P++AIE V I
Sbjct: 38 GENHEWSIEKFRNNLIVTFHKNEPYEASFSLIGVDASIANAFRRILIAEIPSLAIETVYI 97
Query: 122 ANNTSVIQDEVLAHRLGLIPIIVDP------RLFEYMSENDTSN-----EKNTIVFKLHV 170
NNTSVIQDEVLAHRLGL+P+ P R F +E D S+ + NTIV L+V
Sbjct: 98 HNNTSVIQDEVLAHRLGLVPLTGSPEGINWLRWFRQPNEGDPSSGSELADYNTIVLHLNV 157
Query: 171 LCERGGPRLTVKTNELKWLPNGSELPLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPI 230
C++ P+ + NEL PL+ ++ +K T+ + PE + I
Sbjct: 158 ECKK-NPKAS--PNELD--------PLKLYSHAHVYAKDITFQPVGRQEAYFPE-PDGGI 205
Query: 231 RPM-LDITIARLGPGQEIELEAHAVKGIGKTHAKWSPVATAWYRMLPEIVLLEDVEDEDA 289
RP DI +A+L PGQ+I++E H VKGIG HAK+SPVATA YR+LP+I +L + DA
Sbjct: 206 RPTNPDILLAKLRPGQKIDIEMHCVKGIGADHAKFSPVATASYRLLPDIRILRPILGMDA 265
Query: 290 EKLVKTCPVNVFDIEDI--------GS------GKKRATVAQPRACTLCRECLRCGEEWE 335
K P V IE + GS G K+A V P T+ RECLR EE++
Sbjct: 266 VKFAGCFPEGVIGIETVTAEEASQRGSGYEGHEGAKKAVVLDPFKDTVSRECLRH-EEFQ 324
Query: 336 KRVSIRRVKDHFI 348
+V + R++DHFI
Sbjct: 325 GKVKLGRIRDHFI 337
>gi|156368414|ref|XP_001627689.1| predicted protein [Nematostella vectensis]
gi|156214606|gb|EDO35589.1| predicted protein [Nematostella vectensis]
Length = 342
Score = 197 bits (501), Expect = 7e-48, Method: Compositional matrix adjust.
Identities = 120/273 (43%), Positives = 159/273 (58%), Gaps = 47/273 (17%)
Query: 36 RTRVQCNLDAPIHTENVMYSGAYASMGVDNSLQLDHFCNNFRVEVIRLTKDDMEFDLIGI 95
RTRVQ I+T + + G Y D++ + F F++ + RLT DMEFD+IGI
Sbjct: 8 RTRVQLQEHGLINTHSSDFPGNYTDY--DDTWTQEKFEEKFKINITRLTPSDMEFDMIGI 65
Query: 96 DAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRLGLIPIIVDPRLFEYMSEN 155
DA++ANAFRRIL+AE+PTMAIEKV + NNTS+IQDEVLAHRLGLIPI DPRLF Y +
Sbjct: 66 DASVANAFRRILLAEVPTMAIEKVFLYNNTSIIQDEVLAHRLGLIPIHADPRLFNYKKQG 125
Query: 156 DT-SNEKNTIVFKLHVLC--ERGGPR-----------LTVKTNELKWLPNGSELPLETKP 201
D + + T+VF+L V C + P+ V T+ LKW+P
Sbjct: 126 DEEAQDDTTLVFELKVKCIKNKNAPKDATDPDELYINSKVTTDHLKWIPT---------- 175
Query: 202 DSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPMLDITIARLGPGQEIELEAHAVKGIGKTH 261
P+ F QD IRP+ ++ QE++++ HAVKG+GK H
Sbjct: 176 -------PQQAQKFGP-QD---------IRPLSNVVF--FFTLQELDIKMHAVKGVGKDH 216
Query: 262 AKWSPV--ATAWYRMLPEIVLLEDVEDEDAEKL 292
AK+SPV +TA YR+LPEI LL+ EDE A+KL
Sbjct: 217 AKFSPVGKSTASYRLLPEITLLKPCEDELADKL 249
>gi|391342311|ref|XP_003745464.1| PREDICTED: uncharacterized protein LOC100901074 [Metaseiulus
occidentalis]
Length = 684
Score = 197 bits (500), Expect = 9e-48, Method: Compositional matrix adjust.
Identities = 123/299 (41%), Positives = 178/299 (59%), Gaps = 19/299 (6%)
Query: 51 NVMYSGAYASMGVDNSLQLDHFCNNFRVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAE 110
N+ S AY + L F R+ V++ T +D+EFD+IG+D AIANA RRILIAE
Sbjct: 357 NIRLSEAYGEGS--QAYSLADFRRKLRMSVVKCTDEDLEFDIIGVDPAIANAIRRILIAE 414
Query: 111 LPTMAIEKVLIANNTSVIQDEVLAHRLGLIPIIVDPRLFEYMSENDTSNEKNTIVFKLHV 170
+PTMA +++ + NNTS I D+ L +R+GL+PI VD RLFE + ++ ++T+VF+LH+
Sbjct: 415 VPTMAADRITLINNTSFIHDKDLTNRIGLVPIRVDSRLFENRNPEQPASSQDTVVFELHI 474
Query: 171 LCERGGPRLTVKTNELKWLPNGSELPLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPI 230
C T L+ + S LP + +S+ S T+ Q++L F+ NP
Sbjct: 475 RC----------TKNLQAAQD-STLPKDIYSNSSVYSGHLTWVPL-EGQEML--FAKNPP 520
Query: 231 RPML-DITIARLGPGQEIELEAHAVKGIGKTHAKWSPVATAWYRMLPEIVLLEDVEDEDA 289
+P+ DI IA+L PGQEI+++ +KGIGKTHAK+SPVATA YR+LP I +LEDV E A
Sbjct: 521 KPIHDDILIAKLRPGQEIDMKIEYLKGIGKTHAKFSPVATASYRLLPVIEILEDVCGEAA 580
Query: 290 EKLVKTCPVNVFDIEDIGSGKKRATVAQPRACTLCRECLRCGEEWEKRVSIRRVKDHFI 348
+L + V +IE +G A + PR T R L ++ ++V + R DHFI
Sbjct: 581 RRLKNSFSKGVVEIEK-RNGVDVAKIVNPRMDTCSRNVL-MHDDLAEKVRLGRKLDHFI 637
>gi|443897408|dbj|GAC74749.1| RNA polymerase I and III, subunit RPA40/RPC40 [Pseudozyma
antarctica T-34]
Length = 404
Score = 196 bits (498), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 125/321 (38%), Positives = 173/321 (53%), Gaps = 40/321 (12%)
Query: 35 QRTRVQCNLDAPIHTENVMYSGAYASMGVDNSLQLDHFCNNFRVEVIRLTKDDMEFDLIG 94
+R D P+H ++ + A++G ++ + RL+ EFDLIG
Sbjct: 69 ERVGSVAETDFPLHHPGEAHTFSLATLG-----------ERLKLIITRLSDASCEFDLIG 117
Query: 95 IDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRLGLIPIIVDPRLFEYMSE 154
+DA+IANA RR+L+AE+PT+AIE V I NNTS+IQDEVL+HRLGL+P+ + P
Sbjct: 118 VDASIANAIRRVLMAEVPTVAIEHVYIWNNTSIIQDEVLSHRLGLVPLAIHPDKVLMRQP 177
Query: 155 NDTSNEKNTIVFKLHVLCERGGPRLTVKTNELKWLPNGSELPLETKPDS-----NPSSKP 209
D +++ NT+VF L CER N + ET PD N S
Sbjct: 178 GDDADDSNTVVFHLKAKCER----------------NRNAARGETDPDKLYIGHNVYSGA 221
Query: 210 RTYTSFSSSQDLLPEFSNNPIRPMLD-ITIARLGPGQEIELEAHAVKGIGKTHAKWSPVA 268
+ +D +F++ P RP+ D I IA+L PGQE++LE H KGIGK HAK+SPVA
Sbjct: 222 LEWDPKGGQED---DFADAPPRPVHDRILIAKLRPGQELDLELHCEKGIGKDHAKFSPVA 278
Query: 269 TAWYRMLPEIVLLEDVEDEDAEKLVKTCPVNVFDIEDIGSGKKRATVAQ-PRACTLCREC 327
TA YR+LP I LL+ V +K V P V + G G +R Q R T+ RE
Sbjct: 279 TATYRLLPHIQLLQPVPAALVDKFVACFPPGVIGVS--GEGDERKVFVQDARKDTISREV 336
Query: 328 LRCGEEWEKRVSIRRVKDHFI 348
R +E+E V + RV+DHF+
Sbjct: 337 FRH-DEFENTVKLGRVRDHFL 356
>gi|409050971|gb|EKM60447.1| hypothetical protein PHACADRAFT_179740 [Phanerochaete carnosa
HHB-10118-sp]
Length = 378
Score = 196 bits (497), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 119/292 (40%), Positives = 170/292 (58%), Gaps = 45/292 (15%)
Query: 71 HFCNNFRVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQD 130
H N +V+V RL++ +EFDL+G+DA+IANAFRRI+IAE+PT+AIE V + NNTSVI D
Sbjct: 56 HVPCNLQVKVQRLSQRSIEFDLVGVDASIANAFRRIIIAEVPTIAIEHVYVWNNTSVIHD 115
Query: 131 EVLAHRLGLIPIIVDPRLFEYMSEND---TSNEKNTIVFKLHVLCERGGPRLT------- 180
EVLAHR+GL+P+ DP ++ + T N++NT+VF+L CER P+ +
Sbjct: 116 EVLAHRIGLVPLSADPSTLDFRTPTGFGATPNDRNTLVFRLQATCER-APKGSGKEYIND 174
Query: 181 -VKTNELKWLPNGSELPLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPM-LDITI 238
VK+ +L W+P G + + F+NNP P DI +
Sbjct: 175 EVKSGDLVWVPQGEQEEV---------------------------FANNPPGPTNKDIVL 207
Query: 239 ARLGPGQEIELEAHAVKGIGKTHAKWSPVATAWYRMLPEIVL--LEDVEDEDAEKLVKTC 296
A+L PGQEI++E HA+KG+GK HAKWSPVATA YR+ P I+L + V A+K
Sbjct: 208 AKLRPGQEIDMELHAIKGVGKEHAKWSPVATASYRLHPLILLNPQKPVPTHLAKKFAGCF 267
Query: 297 PVNVFDIEDIGSGKKRATVAQPRACTLCRECLRCGEEWEKRVSIRRVKDHFI 348
V ++ G+ + R ++ RE LR EE++ V ++RV+D FI
Sbjct: 268 SPGVVQVD--ADGEISIDLHGMRKDSVSREVLRH-EEFQGCVELKRVRDWFI 316
>gi|430813139|emb|CCJ29483.1| unnamed protein product, partial [Pneumocystis jirovecii]
Length = 578
Score = 195 bits (496), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 120/294 (40%), Positives = 164/294 (55%), Gaps = 61/294 (20%)
Query: 88 MEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRLGLIPIIVDPR 147
MEFDLIGID +I NAFRRILIAE+PT+AIE V + NNTS+IQDE+LA RLGLIPI +P
Sbjct: 1 MEFDLIGIDCSIVNAFRRILIAEIPTIAIEYVFVNNNTSIIQDEILAQRLGLIPIKANPD 60
Query: 148 LFEYMSEN--------------DTSNE-----KNTIVFKLHVLC---------ERGGPRL 179
F + + N D + E +T+V L V C ER +L
Sbjct: 61 FFTWFTSNYFPIFFFILNIKEPDANQEPRPTDYDTVVLSLKVACTKNPKASENERDPEKL 120
Query: 180 TVKTN----ELKWLPNGSELPLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPMLD 235
+ +N +++W P G ++ L F ++PI+ + D
Sbjct: 121 YINSNVYSGDIQWQPAGRQIEL---------------------------FKDDPIKAVHD 153
Query: 236 -ITIARLGPGQEIELEAHAVKGIGKTHAKWSPVATAWYRMLPEIVLLEDVEDEDAEKLVK 294
I IA+L PGQEI++ H + GIG+ HAK+SPV+T+ YR+LP I +LE + D+DAEK
Sbjct: 154 KILIAKLRPGQEIDVTMHCILGIGQDHAKFSPVSTSSYRLLPTIHILEPIYDDDAEKFAL 213
Query: 295 TCPVNVFDIEDIGSGKKRATVAQPRACTLCRECLRCGEEWEKRVSIRRVKDHFI 348
V DI +K A VA PR T+ RECLR +E++ +V + RV+DHFI
Sbjct: 214 CFSKGVIDIVLDEQNRKVAKVANPRNDTVSRECLR-HDEFKDKVKLGRVRDHFI 266
>gi|358055076|dbj|GAA98845.1| hypothetical protein E5Q_05533 [Mixia osmundae IAM 14324]
Length = 368
Score = 195 bits (495), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 122/304 (40%), Positives = 176/304 (57%), Gaps = 39/304 (12%)
Query: 59 ASMGV-DNSLQLDHFCNNFRVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIE 117
A+ GV D + F + ++ L+ ++EFD+IGIDAAIANA RRI+IAE+PT+AIE
Sbjct: 44 ATAGVEDQGWNAEAFKAQLGISILSLSPSEIEFDIIGIDAAIANALRRIMIAEVPTVAIE 103
Query: 118 KVLIANNTSVIQDEVLAHRLGLIPIIVDPRLFEYMSENDTSNEKNTIVFKLHVLCE-RGG 176
V + NNTS++QDEVL+ RLGL+P+ ++PR ++ + ++ + NT+VF L CE R G
Sbjct: 104 TVFVFNNTSIVQDEVLSQRLGLVPLKINPRQIDFKTPDEGPTDLNTVVFSLLAKCEHRPG 163
Query: 177 --------PRLTVKTN----ELKWLPNGSELPLETKPDSNPSSKPRTYTSFSSSQDLLPE 224
L + +N +L+W P G++ E+ D++ +++PR QD
Sbjct: 164 HDPDEKDPDELYIDSNVFSGKLEWKPQGAQ---ESMFDTD-ATRPRPV------QD---- 209
Query: 225 FSNNPIRPMLDITIARLGPGQEIELEAHAVKGIGKTHAKWSPVATAWYRMLPEIVLLEDV 284
DI +A+L PGQ I +E H KG GKTHAKWSPVATA YR++P I +L+ +
Sbjct: 210 ----------DILLAKLRPGQTISVELHCNKGNGKTHAKWSPVATASYRLMPHIRILKPI 259
Query: 285 EDEDAEKLVKTCPVNVFDIEDIGSGKKRATVAQPRACTLCRECLRCGEEWEKRVSIRRVK 344
+ EK V I+ G K +V PR T+ RE LR E+E VS+ RV+
Sbjct: 260 PEHLCEKFKSCFQPGVIGIKRDLDGTKCCSVDDPRRDTVSREVLR-HPEFEGYVSLGRVR 318
Query: 345 DHFI 348
DHFI
Sbjct: 319 DHFI 322
>gi|296422447|ref|XP_002840772.1| hypothetical protein [Tuber melanosporum Mel28]
gi|295636995|emb|CAZ84963.1| unnamed protein product [Tuber melanosporum]
Length = 377
Score = 194 bits (494), Expect = 4e-47, Method: Compositional matrix adjust.
Identities = 122/302 (40%), Positives = 169/302 (55%), Gaps = 36/302 (11%)
Query: 62 GVDNSLQLDHFCNNFRVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLI 121
G D+S + HF FRV+ R T +FDLI DAAIAN RRI+IAE+PT+AIE V +
Sbjct: 32 GEDHSWNIKHFRRTFRVKFFRNTPLFSQFDLIHTDAAIANTLRRIMIAEVPTLAIESVYV 91
Query: 122 ANNTSVIQDEVLAHRLGLIPIIVDPRLFE----YMSENDTS----NEKNTIVFKLHVLCE 173
+NNTS+IQDEVLAHRLGLIP+ D + Y+ D++ +++T+V L CE
Sbjct: 92 SNNTSIIQDEVLAHRLGLIPLCGDKDALKGLSWYLRGEDSAPREPTDEDTVVLYLKKACE 151
Query: 174 RGGPRLTVKTNELKWLPNGSELPLETKPDSNPSS---KPRTYTS---FSSSQDLLPEFSN 227
R P K D++P Y S F + + F++
Sbjct: 152 RN--------------------PDAKKTDTDPDKLYINHNVYASDILFEPAGRQIKSFAH 191
Query: 228 NPIRPML-DITIARLGPGQEIELEAHAVKGIGKTHAKWSPVATAWYRMLPEIVLLEDVED 286
+P+R DI IA+L PGQEI+L H +KGIG+ HAK+SPVATA YR+LP+I + + +
Sbjct: 192 DPVRAANPDILIAKLRPGQEIDLTMHCIKGIGQDHAKFSPVATASYRLLPDIKIKKPIRG 251
Query: 287 EDAEKLVKTCPVNVFDIEDIGSGKKRATVAQPRACTLCRECLRCGEEWEKRVSIRRVKDH 346
+ AE+ P V I + G+K A V R T+ RE LR +E++ V + RV+DH
Sbjct: 252 KAAERFAACFPKGVIAIRERKDGEKEAVVDNVRNDTVSREVLR-HDEFKGIVELGRVRDH 310
Query: 347 FI 348
FI
Sbjct: 311 FI 312
>gi|71013592|ref|XP_758635.1| hypothetical protein UM02488.1 [Ustilago maydis 521]
gi|46098293|gb|EAK83526.1| hypothetical protein UM02488.1 [Ustilago maydis 521]
Length = 320
Score = 194 bits (494), Expect = 4e-47, Method: Compositional matrix adjust.
Identities = 119/285 (41%), Positives = 161/285 (56%), Gaps = 38/285 (13%)
Query: 35 QRTRVQCNLDAPIHTENVMYSGAYASMGVDNSLQLDHFCNNFRVEVIRLTKDDMEFDLIG 94
+R N D P+H G +N+ L N +V V RL+ EFDLIG
Sbjct: 63 ERVGSVANTDFPLHYP-----------GENNAFSLAAANQNLKVIVTRLSDASCEFDLIG 111
Query: 95 IDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRLGLIPIIVDPRLFEYMSE 154
+DA+IANA RR+L+AE+PT+AIE V I NNTS+IQDEVL+HRLGL+P+ ++P
Sbjct: 112 VDASIANAVRRVLMAEVPTVAIEHVYIWNNTSIIQDEVLSHRLGLVPLAINPDKVAMRMP 171
Query: 155 NDTSNEKNTIVFKLHVLCERGGPRLTVKTNELKWLPNGSELPLETKPDS-----NPSSKP 209
D +++ NT+VF L CER N S ET PD N S+
Sbjct: 172 GDEADDSNTVVFHLKAKCER----------------NRSAARGETDPDKLYIGHNVYSEQ 215
Query: 210 RTYTSFSSSQDLLPEFSNNPIRPMLD-ITIARLGPGQEIELEAHAVKGIGKTHAKWSPVA 268
+ + + +F+++P RP+ D I IA+L PGQE++LE H KGIGK HAK+SPVA
Sbjct: 216 LRWDAKGGQEK---DFADSPPRPVQDKILIAKLRPGQELDLELHCEKGIGKDHAKFSPVA 272
Query: 269 TAWYRMLPEIVLLEDVEDEDAEKLVKTCPVNVFDIEDIGSGKKRA 313
TA YR+LP I LL+ + DE +K V P V ++ GSGK R+
Sbjct: 273 TATYRLLPHIQLLQPIPDESIDKFVSCFPPGVIGVQ--GSGKTRS 315
>gi|50285441|ref|XP_445149.1| hypothetical protein [Candida glabrata CBS 138]
gi|49524452|emb|CAG58049.1| unnamed protein product [Candida glabrata]
Length = 334
Score = 194 bits (494), Expect = 4e-47, Method: Compositional matrix adjust.
Identities = 125/322 (38%), Positives = 173/322 (53%), Gaps = 35/322 (10%)
Query: 32 IEFQRTRVQCNLDAPIHTENVMYSGAYASMGVDNSLQLDHFCNNFRVEVIRLTKDDMEFD 91
IE+ R + D P Y+S G N+ ++ F F ++V + ++ FD
Sbjct: 7 IEYNRVTNTASTDFP----------GYSSQGA-NAWDVERFRETFDIQVSSHEERELNFD 55
Query: 92 LIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRLGLIPIIVDPRLFEY 151
+IGID ++ANAFRRI+IAE+P +A E V I NNTSVIQDEVLAHR+GL+P+ VDP E
Sbjct: 56 MIGIDTSLANAFRRIMIAEVPAVAPEYVYIQNNTSVIQDEVLAHRIGLVPLKVDPEKLER 115
Query: 152 MSENDTSN----EKNTIVFKLHVLCERGGPRLTVKTNELKWLPNGSELPLETKPDSNPSS 207
+ +D N +KNTIV L+V C R P + L N + +
Sbjct: 116 LDTSDPDNLEFHDKNTIVMTLNVKCTR-NPDAPKDCTDPTILYNNAHVYARD-------- 166
Query: 208 KPRTYTSFSSSQDLLPEFSNNPIRPM-LDITIARLGPGQEIELEAHAVKGIGKTHAKWSP 266
F + F++ P+ P DI +A+L PGQEI L H + G GK HAK+SP
Sbjct: 167 -----LKFEPHSSQVETFADCPVVPCDPDILLAKLRPGQEISLSTHCILGEGKDHAKFSP 221
Query: 267 VATAWYRMLPEIVLLEDVEDEDAEKLVKTCPVNVFDIEDIGSGKKRATVAQPRACTLCRE 326
VATA YR+LP I +LE + + A++ P V I + G A V PR T+ RE
Sbjct: 222 VATASYRLLPHIEILEPITGDSAKRFQACFPKGVIGINENG----EAYVLDPRKDTVSRE 277
Query: 327 CLRCGEEWEKRVSIRRVKDHFI 348
LR EE+E +V + RV+DHF+
Sbjct: 278 VLR-HEEFEGKVKLGRVRDHFV 298
>gi|156089735|ref|XP_001612274.1| DNA-directed RNA polymerase, alpha subunit, N terminal domain
containing protein [Babesia bovis]
gi|154799528|gb|EDO08706.1| DNA-directed RNA polymerase, alpha subunit, N terminal domain
containing protein [Babesia bovis]
Length = 319
Score = 194 bits (493), Expect = 5e-47, Method: Compositional matrix adjust.
Identities = 116/281 (41%), Positives = 163/281 (58%), Gaps = 42/281 (14%)
Query: 75 NFRVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLA 134
+ +++ ++ T+ ++ G++ AIANA RRIL+AE+PT+AIE V I NT VIQDEVLA
Sbjct: 33 DVKIKFLKNTRYHAIAEIEGLNVAIANAIRRILLAEVPTLAIESVHIYQNTGVIQDEVLA 92
Query: 135 HRLGLIPIIVDPRLFEYMSENDTSNEKNTIVFKLHVLCER----GGPRLTVKTNELKWLP 190
HRLGL+P +P L Y D S +KN++ F L V C++ G L V ++KW+P
Sbjct: 93 HRLGLVPFDCNPDLIPYRDNEDLS-DKNSVCFHLKVECKKESLAGRTNLPVYAGDMKWVP 151
Query: 191 NGSELPLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPM-LDITIARLGPGQEIEL 249
S Q L F +NP +P+ DI + +L PGQEI+L
Sbjct: 152 ------------------------LSDEQAEL--FKDNPPKPIHKDILLTKLSPGQEIDL 185
Query: 250 EAHAVKGIGKTHAKWSPVATAWYRMLPEIVLLED--VEDEDAEKLVKTCPVNVFDIEDIG 307
+A+ KGIGKTHAKWSPV TA YR P+I ED + +++ E+LV+ CP+ VF
Sbjct: 186 KAYLEKGIGKTHAKWSPVCTAVYRFKPDITFSEDEPLTNDEVEELVQICPMGVF-----S 240
Query: 308 SGKKRATVAQPRACTLCRECLRCGEEWEKRVSIRRVKDHFI 348
+ K R T +P CT CR CL E + KRV I+++ +HFI
Sbjct: 241 ADKGRITTIRPYNCTSCRACL---ERFPKRVIIKKLSNHFI 278
>gi|363752191|ref|XP_003646312.1| hypothetical protein Ecym_4450 [Eremothecium cymbalariae
DBVPG#7215]
gi|356889947|gb|AET39495.1| hypothetical protein Ecym_4450 [Eremothecium cymbalariae
DBVPG#7215]
Length = 334
Score = 193 bits (491), Expect = 8e-47, Method: Compositional matrix adjust.
Identities = 125/322 (38%), Positives = 176/322 (54%), Gaps = 35/322 (10%)
Query: 32 IEFQRTRVQCNLDAPIHTENVMYSGAYASMGVDNSLQLDHFCNNFRVEVIRLTKDDMEFD 91
IE+ R + D P ++ N D S ++ F + V++ L + FD
Sbjct: 7 IEYNRVTNTTSTDFPGYSHNE-----------DFSWDVNKFRDTMDVQISHLDDREANFD 55
Query: 92 LIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRLGLIPIIVDPRLFEY 151
LI IDA+IANAFRRI+I+E+P++A E V NNTSVIQDEVLAHR+GL+P+ VDP + +
Sbjct: 56 LIHIDASIANAFRRIMISEVPSVAAEYVYFFNNTSVIQDEVLAHRIGLVPLKVDPDMLTW 115
Query: 152 ----MSENDTSNEKNTIVFKLHVLCERGGPRLTVKTNELKWLPNGSELPLETKPDSNPSS 207
+ E + ++NT+V L+V C P P GS P E +++ S
Sbjct: 116 VDKSLPEAERFTDENTVVMSLNVKC-TANPD----------APKGSTDPKELYNNAHIYS 164
Query: 208 KPRTYTSFSSSQDLLPEFSNNPIRPM-LDITIARLGPGQEIELEAHAVKGIGKTHAKWSP 266
+ F L F+ +P+ P DI +A+L PGQEI L H + G+G HAK+SP
Sbjct: 165 RD---LKFEPQGKQLDSFAKHPVLPTDPDILLAKLRPGQEISLRVHCILGVGGDHAKFSP 221
Query: 267 VATAWYRMLPEIVLLEDVEDEDAEKLVKTCPVNVFDIEDIGSGKKRATVAQPRACTLCRE 326
V TA YR++P I +LE ++ EDA K VK P V I++ G A + R T+ RE
Sbjct: 222 VCTASYRLMPHIDILETIQGEDATKFVKCFPPGVAAIDEKG----EAYIKDARKDTVSRE 277
Query: 327 CLRCGEEWEKRVSIRRVKDHFI 348
LR E+E +V + RVKDHFI
Sbjct: 278 VLR-HPEFEGKVKLGRVKDHFI 298
>gi|189239160|ref|XP_971966.2| PREDICTED: similar to CG3756 CG3756-PA [Tribolium castaneum]
Length = 338
Score = 193 bits (491), Expect = 9e-47, Method: Compositional matrix adjust.
Identities = 123/304 (40%), Positives = 171/304 (56%), Gaps = 49/304 (16%)
Query: 63 VDNSLQLDHFCNNFRVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIA 122
+D L F FRV ++R ++++EFDLIGI +AN FRR++++++PTMAIEKV I
Sbjct: 30 LDEKWDLKTFKKRFRVVIVRSEENELEFDLIGIHPFLANTFRRLMLSDVPTMAIEKVHIL 89
Query: 123 NNTSVIQDEVLAHRLGLIPIIVDPRLFEYMSENDTS----NEKNTIVFKLHVLC------ 172
NNTS+IQDEVLAHRLGLIP+ DPRLFE ++ +S E++T+ F L + C
Sbjct: 90 NNTSIIQDEVLAHRLGLIPLKADPRLFEMKTDRKSSTAEGTEQDTLEFALKIKCTNNKDS 149
Query: 173 -------ERGGPRLTVKTNELKWLPNGSELPLETKPDSNPSSKPRTYTSFSSSQDLLPEF 225
E V + +KW+P G + K R F
Sbjct: 150 SKDSLRAEDMYKNNNVYSKHIKWVPIGKQ-------------KER--------------F 182
Query: 226 SN-NPIRPMLDITIARLGPGQEIELEAHAVKGIGKTHAKWSPVATAWYRMLPEIVLLEDV 284
S+ PI P DI IA++ PG E++L+ AVK G+ HAK+SPVATA+YR+LP+I LL +V
Sbjct: 183 SDVGPIHP--DILIAKMRPGHELDLKLLAVKSNGRDHAKFSPVATAFYRLLPDIKLLREV 240
Query: 285 EDEDAEKLVKTCPVNVFDIEDIGSGKKRATVAQPRACTLCRECLRCGEEWEKRVSIRRVK 344
E E AE+L K V I G+K A VA R T R R E+ + V++ +++
Sbjct: 241 EGEAAERLQKCFSPGVISIRH-EKGRKYAVVANARYDTGSRNVFRY-EDLKDAVAMTKIQ 298
Query: 345 DHFI 348
DHFI
Sbjct: 299 DHFI 302
>gi|225677934|gb|EEH16218.1| DNA-directed RNA polymerases I and III subunit RPAC1
[Paracoccidioides brasiliensis Pb03]
Length = 345
Score = 193 bits (491), Expect = 9e-47, Method: Compositional matrix adjust.
Identities = 123/288 (42%), Positives = 167/288 (57%), Gaps = 39/288 (13%)
Query: 87 DMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRLGLIPIIVDP 146
+ F LIG+DA+IANAFRRILIAE+P++AIE V I NNTSVIQDEVLAHRLGL+P+ P
Sbjct: 28 EASFSLIGVDASIANAFRRILIAEIPSLAIETVYIHNNTSVIQDEVLAHRLGLVPLTGSP 87
Query: 147 ------RLFEYMSENDTSN-----EKNTIVFKLHVLCERGGPRLTVKTNELKWLPNGSEL 195
R F +E D S+ + NTIV L+V C++ P+ + +
Sbjct: 88 EGINWLRWFRQPNEGDPSSGSELADYNTIVLHLNVKCKK-NPKASPDEQD---------- 136
Query: 196 PLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPM-LDITIARLGPGQEIELEAHAV 254
PL+ ++ +K T+ + PE + IRP DI +A+L PGQ+I++E H V
Sbjct: 137 PLKLYSHAHVYAKDITFQPVGRQEAYFPE-PDGGIRPTNPDILLAKLRPGQKIDIEMHCV 195
Query: 255 KGIGKTHAKWSPVATAWYRMLPEIVLLEDVEDEDAEKLVKTCPVNVFDIEDI-------- 306
KGIG HAK+SPVATA YR+LP+I +L + +DA K P V IE +
Sbjct: 196 KGIGADHAKFSPVATASYRLLPDIRILRPILGKDAVKFAGCFPEGVIGIETVTAEEASQR 255
Query: 307 GS------GKKRATVAQPRACTLCRECLRCGEEWEKRVSIRRVKDHFI 348
GS G K+A V P T+ RECLR EE++ +V + R++DHFI
Sbjct: 256 GSGYEGHEGAKKAVVLDPFKDTVSRECLRH-EEFQGKVKLGRIRDHFI 302
>gi|406866169|gb|EKD19209.1| RNA polymerase Rpb3/RpoA insert domain-containing protein
[Marssonina brunnea f. sp. 'multigermtubi' MB_m1]
Length = 379
Score = 193 bits (491), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 134/352 (38%), Positives = 190/352 (53%), Gaps = 53/352 (15%)
Query: 29 PPHIEFQRTR-VQCNLDAPIHTENVMYSGAYASMGVDNSLQLDHFCNNFRVEVIRLTKDD 87
P E +R R V N + + + G Y G D+S + F +F+V+ +
Sbjct: 10 PSQAELERRRIVGINSETVTDITSTDFPGHYP--GEDHSWDVKKFRKDFQVKFHHNDPTE 67
Query: 88 MEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRLGLIPII-VDP 146
F LIG+DA++ANAFRRI+IAE+PT+AIE V I NNTS+IQDEVLAHRLGLIP+ +
Sbjct: 68 ASFSLIGLDASVANAFRRIMIAEIPTLAIENVYIYNNTSIIQDEVLAHRLGLIPLKGGNE 127
Query: 147 RLFEYM----------SENDTSNEKNTIVFKLHVLCERGGPRLTVKTNELKWLPNGSELP 196
L +Y+ E+ + + NTI+ +L+V C + P G + P
Sbjct: 128 GLLDYLKWLKKPEESSQESPVNYDYNTILLELNVECTKNHD-----------APKGEKDP 176
Query: 197 LETKPDSNPSSKPRTYTSFS------SSQDLLPEFSNNPIRPMLDITIARLGPGQEIELE 250
L +++ +K + F S +D + + NP DI IA+L PGQ IELE
Sbjct: 177 LVLYHNAHIYAKDIKFKPFGNQHKYFSGEDAIE--TTNP-----DILIAKLRPGQCIELE 229
Query: 251 AHAVKGIGKTHAKWSPVATAWYRMLPEIVLLEDVEDEDAEKLVKTCPVNVFDI------- 303
HA+KG+G HAK+SPVATA YR+LP I +L+ + +DAEK P V I
Sbjct: 230 MHAIKGVGSDHAKFSPVATASYRLLPTISILKPILGKDAEKFKSCFPEGVIGIDRVTKKE 289
Query: 304 -EDIGS------GKKRATVAQPRACTLCRECLRCGEEWEKRVSIRRVKDHFI 348
E +GS G+K+A V T+ RECLR EE++ +V + R++DHFI
Sbjct: 290 AEMVGSGYEGHEGEKKAVVFDTMKDTVSRECLRH-EEFKDKVKLGRIRDHFI 340
>gi|340722889|ref|XP_003399833.1| PREDICTED: DNA-directed RNA polymerases I and III subunit
RPAC1-like [Bombus terrestris]
Length = 505
Score = 193 bits (491), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 119/318 (37%), Positives = 176/318 (55%), Gaps = 47/318 (14%)
Query: 55 SGAYASMGVDNSLQLDHFCNNFRVEVIRLTKDD--MEFDLIGIDAAIANAFRRILIAELP 112
+ Y + L +F F+++VIR ++D+ +EFDLIG ANAFRR+L++E+P
Sbjct: 19 ASEYTNYQPQQDWNLHNFKKEFKIQVIRESEDERELEFDLIGYPVGFANAFRRVLLSEVP 78
Query: 113 TMAIEKVLIANNTSVIQDEVLAHRLGLIPIIVDPRLFEY----MSENDTSNEKNTIVFKL 168
TMAIEKV I NNTS+IQDEVLAHRLGLIP+ DPRLFEY + + D ++++T+ ++L
Sbjct: 79 TMAIEKVYIVNNTSLIQDEVLAHRLGLIPLQADPRLFEYPSSTIKDEDEVSDQDTLRYEL 138
Query: 169 HVLCERG--GPRLTVKTNEL-----------KWLPNGSELPLETKPDSNPSSKPRTYTSF 215
V C P+ + +TN++ KW+P G + + PR
Sbjct: 139 KVSCTWNPQAPKDSRRTNDMYRNSNVYSKDIKWVPIGRQAEI----------YPRGAEQL 188
Query: 216 SSSQDLLPEFSNNPIRPMLDITIARLGPGQEIELEAHAVKGIGKTHAKWSPVATAWYRML 275
+D DI I ++ PGQEI + HAVKGIGK HAK+SPVATA YR+L
Sbjct: 189 GVLED--------------DILICKMRPGQEIHVFMHAVKGIGKDHAKFSPVATASYRLL 234
Query: 276 PEIVLLEDVEDEDAEKLVKTCPVNVFDIEDIGSG---KKRATVAQPRACTLCRECLRCGE 332
P+I L++ V E A++L + V ++ + G + A V PR + R + E
Sbjct: 235 PDIQLVKSVRGEMADRLKSCFSIGVIEVIETKPGDPESREAKVKNPRYDSCSRNVFQ-HE 293
Query: 333 EWEKRVSIRRVKDHFICK 350
+ + V + RV++H I +
Sbjct: 294 DLKGYVRLSRVRNHIISQ 311
>gi|226287322|gb|EEH42835.1| DNA-directed RNA polymerases I and III subunit RPAC1
[Paracoccidioides brasiliensis Pb18]
Length = 380
Score = 193 bits (490), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 127/313 (40%), Positives = 175/313 (55%), Gaps = 39/313 (12%)
Query: 62 GVDNSLQLDHFCNNFRVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLI 121
G ++ ++ F NN V + + F LIG+DA+IANAFRRILI+E+P++AIE V I
Sbjct: 38 GENHEWSIEKFRNNLIVTFHKNEPYEASFSLIGVDASIANAFRRILISEIPSLAIETVYI 97
Query: 122 ANNTSVIQDEVLAHRLGLIPIIVDP------RLFEYMSENDTSN-----EKNTIVFKLHV 170
NNTSVIQDEVLAHRLGL+P+ P R F +E D S+ + NTIV L+V
Sbjct: 98 HNNTSVIQDEVLAHRLGLVPLTGSPEGINWLRWFRQPNEGDPSSGSELADYNTIVLHLNV 157
Query: 171 LCERGGPRLTVKTNELKWLPNGSELPLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPI 230
C++ P+ + + PL+ ++ +K T+ + PE + I
Sbjct: 158 ECKK-NPKASPDEQD----------PLKLYSHAHVYAKDITFQPVGRQEAYFPE-PDGGI 205
Query: 231 RPM-LDITIARLGPGQEIELEAHAVKGIGKTHAKWSPVATAWYRMLPEIVLLEDVEDEDA 289
RP DI +A+L PGQ+I++E H VKGIG HAK+SPVATA YR+LP+I +L + DA
Sbjct: 206 RPTNPDILLAKLRPGQKIDIEMHCVKGIGADHAKFSPVATASYRLLPDIRILRPILGMDA 265
Query: 290 EKLVKTCPVNVFDIEDI--------GS------GKKRATVAQPRACTLCRECLRCGEEWE 335
K P V IE + GS G K+A V P T+ RECLR EE+
Sbjct: 266 VKFAGCFPEGVIGIETVTAEEASQRGSGYEGHEGAKKAVVLDPFKDTVSRECLRH-EEFR 324
Query: 336 KRVSIRRVKDHFI 348
+V + R++DHFI
Sbjct: 325 GKVKLGRIRDHFI 337
>gi|50418823|ref|XP_457932.1| DEHA2C05654p [Debaryomyces hansenii CBS767]
gi|49653598|emb|CAG85988.1| DEHA2C05654p [Debaryomyces hansenii CBS767]
Length = 335
Score = 193 bits (490), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 125/322 (38%), Positives = 172/322 (53%), Gaps = 35/322 (10%)
Query: 32 IEFQRTRVQCNLDAPIHTENVMYSGAYASMGVDNSLQLDHFCNNFRVEVIRLTKDDMEFD 91
IE+ R + D P H+ N G +A ++ F ++F + + L++ FD
Sbjct: 8 IEYNRVTNTSSTDFPGHSSN----GDFA-------WDIEKFKDSFEINISHLSERSSTFD 56
Query: 92 LIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRLGLIPIIVDPRLFEY 151
LI ID +IANAFRRI+I+E+P++A E V + NNTSVIQDEVLAHR+GLIP+ VDP +
Sbjct: 57 LIHIDTSIANAFRRIMISEVPSVAAETVYVFNNTSVIQDEVLAHRIGLIPLKVDPDTLTW 116
Query: 152 M----SENDTSNEKNTIVFKLHVLCERGGPRLTVKTNELKWLPNGSELPLETKPDSNPSS 207
+ E D ++NTIV L V C + P GS P E +S+ +
Sbjct: 117 IDTAQDEKDRFTDENTIVMSLDVSCTKN-----------PHPPQGSTDPKELYRNSHVYA 165
Query: 208 KPRTYTSFSSSQDLLPEFSNNPIRPM-LDITIARLGPGQEIELEAHAVKGIGKTHAKWSP 266
K F L F NNP+ DI +A+L P QEI L AH + G+G HAK+SP
Sbjct: 166 KD---LKFEPQGRQLEIFKNNPVVAADPDILLAKLRPNQEISLRAHCILGVGSDHAKFSP 222
Query: 267 VATAWYRMLPEIVLLEDVEDEDAEKLVKTCPVNVFDIEDIGSGKKRATVAQPRACTLCRE 326
VATA YR++P I + E ++ E ++ K P V DI G A V R T+ RE
Sbjct: 223 VATASYRLMPVITITEPIKGESGKRFQKCFPSGVIDINKNG----EAVVKDSRKDTVSRE 278
Query: 327 CLRCGEEWEKRVSIRRVKDHFI 348
LR EE+ +V + R +DHFI
Sbjct: 279 VLR-HEEFNGKVKLGRKRDHFI 299
>gi|449299411|gb|EMC95425.1| hypothetical protein BAUCODRAFT_541052 [Baudoinia compniacensis
UAMH 10762]
Length = 388
Score = 193 bits (490), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 131/345 (37%), Positives = 187/345 (54%), Gaps = 41/345 (11%)
Query: 35 QRTRVQCNLDAPIHTENVMYSGAYASMGVDNSLQLDHFCNNFRVEVIRLTKDDMEFDLIG 94
QR V N + G Y G D+S L+ F +V+ + D F L+G
Sbjct: 14 QRRIVNLNPETVTDVSATDIPGHYGP-GQDDSWDLERFKKGLKVDFHQNAPHDAVFSLVG 72
Query: 95 IDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRLGLIPIIVDPRLFEYM-- 152
+DA+IANAFRRIL+AE+PT+AIE V I NNTS+IQDEVLAHRLGLIP+ + E++
Sbjct: 73 VDASIANAFRRILLAEIPTLAIEDVFIFNNTSIIQDEVLAHRLGLIPLTGGKKGLEWLRW 132
Query: 153 ----------------SEND------TSNEKNTIVFKLHVLCERGGPRLTVKTNELKWLP 190
++D T N+ NTIV L V C R + ++ +
Sbjct: 133 YKKPPPKDDFAAQALHDDDDGEPGVSTPNDHNTIVVTLKVEC-----RWATEQDDGR--- 184
Query: 191 NGSELPLETKPDSN----PSSKPRTYTSFSSSQDLLPEFSN-NPIRPM-LDITIARLGPG 244
+G +L E + D S+ F + FS N IRP+ DI IA+L PG
Sbjct: 185 DGRQLAQEGETDPEVRYVGSNVYAHQLVFEPQGEQTQHFSGENAIRPVNPDILIAKLRPG 244
Query: 245 QEIELEAHAVKGIGKTHAKWSPVATAWYRMLPEIVLLEDVEDEDAEKLVKTCPVNVFDIE 304
Q+I+L H KGIG HAK+SPVATA YR+LP+I +++ + +A+K + P V D++
Sbjct: 245 QKIDLRCHCYKGIGMDHAKFSPVATASYRLLPDINIIKPILGAEAKKFQRCFPRGVIDLK 304
Query: 305 -DIGSGKKRATVAQPRACTLCRECLRCGEEWEKRVSIRRVKDHFI 348
D +G+ +A VA P T+ RECLR +E++ +V + R++DHFI
Sbjct: 305 HDDETGESKAVVADPMKDTVSRECLRH-DEFKGKVKLGRIRDHFI 348
>gi|323302589|gb|EGA56396.1| Rpc40p [Saccharomyces cerevisiae FostersB]
Length = 323
Score = 192 bits (489), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 118/296 (39%), Positives = 168/296 (56%), Gaps = 27/296 (9%)
Query: 60 SMGVDNSLQLDHFCNNFRVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKV 119
S +N ++ F +F V + L + FDLI ID +IANAFRRI+I+E+P++A E V
Sbjct: 24 SKDAENEWNVEKFKKDFEVNISSLDARETNFDLINIDTSIANAFRRIMISEVPSVAAEYV 83
Query: 120 LIANNTSVIQDEVLAHRLGLIPIIVDPRLFEYMSENDTSNEK----NTIVFKLHVLCERG 175
NNTSVIQDEVLAHR+GL+P+ VDP + ++ N +EK NTIV L+V C R
Sbjct: 84 YFFNNTSVIQDEVLAHRIGLVPLKVDPDMLTWVDSNLPDDEKFTDENTIVLSLNVKCTRN 143
Query: 176 --GPRLTVKTNELKWLPNGSELPLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPM 233
P+ + EL + L+ +P S+ F++ P+ P
Sbjct: 144 PDAPKGSTDPKELYNNAHVYARDLKFEPQGRQSTT----------------FADCPVVPA 187
Query: 234 -LDITIARLGPGQEIELEAHAVKGIGKTHAKWSPVATAWYRMLPEIVLLEDVEDEDAEKL 292
DI +A+L PGQEI L+AH + GIG HAK+SPV+TA YR+LP+I +L+ ++ E A +
Sbjct: 188 DPDILLAKLRPGQEISLKAHCILGIGGDHAKFSPVSTASYRLLPQINILQPIKGESARRF 247
Query: 293 VKTCPVNVFDIEDIGSGKKRATVAQPRACTLCRECLRCGEEWEKRVSIRRVKDHFI 348
K P V I++ G A V R T+ RE LR EE+ +V + RV++HFI
Sbjct: 248 QKCFPPGVIGIDE---GSDEAYVKDARKDTVSREVLRY-EEFADKVKLGRVRNHFI 299
>gi|323335178|gb|EGA76468.1| Rpc40p [Saccharomyces cerevisiae Vin13]
gi|323346326|gb|EGA80616.1| Rpc40p [Saccharomyces cerevisiae Lalvin QA23]
Length = 335
Score = 192 bits (489), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 118/296 (39%), Positives = 168/296 (56%), Gaps = 27/296 (9%)
Query: 60 SMGVDNSLQLDHFCNNFRVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKV 119
S +N ++ F +F V + L + FDLI ID +IANAFRRI+I+E+P++A E V
Sbjct: 24 SKDAENEWNVEKFKKDFEVNISSLDAREANFDLINIDTSIANAFRRIMISEVPSVAAEYV 83
Query: 120 LIANNTSVIQDEVLAHRLGLIPIIVDPRLFEYMSENDTSNEK----NTIVFKLHVLCERG 175
NNTSVIQDEVLAHR+GL+P+ VDP + ++ N +EK NTIV L+V C R
Sbjct: 84 YFFNNTSVIQDEVLAHRIGLVPLKVDPDMLTWVDSNLPDDEKFTDENTIVLSLNVKCTRN 143
Query: 176 --GPRLTVKTNELKWLPNGSELPLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPM 233
P+ + EL + L+ +P S+ F++ P+ P
Sbjct: 144 PDAPKGSTDPKELYNNAHVYARDLKFEPQGRQSTT----------------FADCPVVPA 187
Query: 234 -LDITIARLGPGQEIELEAHAVKGIGKTHAKWSPVATAWYRMLPEIVLLEDVEDEDAEKL 292
DI +A+L PGQEI L+AH + GIG HAK+SPV+TA YR+LP+I +L+ ++ E A +
Sbjct: 188 DPDILLAKLRPGQEISLKAHCILGIGGDHAKFSPVSTASYRLLPQINILQPIKGESARRF 247
Query: 293 VKTCPVNVFDIEDIGSGKKRATVAQPRACTLCRECLRCGEEWEKRVSIRRVKDHFI 348
K P V I++ G A V R T+ RE LR EE+ +V + RV++HFI
Sbjct: 248 QKCFPPGVIGIDE---GSDEAYVKDARKDTVSREVLRY-EEFADKVKLGRVRNHFI 299
>gi|350403568|ref|XP_003486838.1| PREDICTED: DNA-directed RNA polymerases I and III subunit
RPAC1-like [Bombus impatiens]
Length = 505
Score = 192 bits (489), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 120/318 (37%), Positives = 175/318 (55%), Gaps = 47/318 (14%)
Query: 55 SGAYASMGVDNSLQLDHFCNNFRVEVIRLTKDD--MEFDLIGIDAAIANAFRRILIAELP 112
+ Y + L +F F+++VIR ++D+ +EFDLIG ANAFRR+L++E+P
Sbjct: 19 ASEYTNYQPQQDWNLHNFKKEFKIQVIRESEDERELEFDLIGYPVGFANAFRRVLLSEVP 78
Query: 113 TMAIEKVLIANNTSVIQDEVLAHRLGLIPIIVDPRLFEYMSEN----DTSNEKNTIVFKL 168
TMAIEKV I NNTS+IQDEVLAHRLGL+P+ DPRLFEY S D ++++T+ ++L
Sbjct: 79 TMAIEKVYIVNNTSLIQDEVLAHRLGLVPLQADPRLFEYPSSTIKNEDEVSDQDTLRYEL 138
Query: 169 HVLCERG--GPRLTVKTNEL-----------KWLPNGSELPLETKPDSNPSSKPRTYTSF 215
V C P+ + +TN++ KW+P G + L PR
Sbjct: 139 KVSCTWNPQAPKDSRRTNDMYRNSNVYSKDIKWVPIGRQAEL----------YPRGAEQL 188
Query: 216 SSSQDLLPEFSNNPIRPMLDITIARLGPGQEIELEAHAVKGIGKTHAKWSPVATAWYRML 275
+D DI I ++ PGQEI + HAVKGIGK HAK+SPVATA YR+L
Sbjct: 189 GVLED--------------DILICKMRPGQEIHVFMHAVKGIGKDHAKFSPVATASYRLL 234
Query: 276 PEIVLLEDVEDEDAEKLVKTCPVNVFDIEDIGSG---KKRATVAQPRACTLCRECLRCGE 332
P+I L++ V E A++L + V ++ + G + A V PR + R + E
Sbjct: 235 PDIQLVKPVRGEMADRLKSCFSIGVIEVIETKPGDPESREAKVKNPRYDSCSRNVFQ-HE 293
Query: 333 EWEKRVSIRRVKDHFICK 350
+ + V + RV++H I +
Sbjct: 294 DLKGYVRLSRVRNHIISQ 311
>gi|190408037|gb|EDV11302.1| DNA-directed RNA polymerases I and III 40 kDa polypeptide
[Saccharomyces cerevisiae RM11-1a]
gi|207340297|gb|EDZ68691.1| YPR110Cp-like protein [Saccharomyces cerevisiae AWRI1631]
gi|259150260|emb|CAY87063.1| Rpc40p [Saccharomyces cerevisiae EC1118]
gi|323331346|gb|EGA72764.1| Rpc40p [Saccharomyces cerevisiae AWRI796]
Length = 335
Score = 192 bits (489), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 118/296 (39%), Positives = 168/296 (56%), Gaps = 27/296 (9%)
Query: 60 SMGVDNSLQLDHFCNNFRVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKV 119
S +N ++ F +F V + L + FDLI ID +IANAFRRI+I+E+P++A E V
Sbjct: 24 SKDAENEWNVEKFKKDFEVNISSLDAREANFDLINIDTSIANAFRRIMISEVPSVAAEYV 83
Query: 120 LIANNTSVIQDEVLAHRLGLIPIIVDPRLFEYMSENDTSNEK----NTIVFKLHVLCERG 175
NNTSVIQDEVLAHR+GL+P+ VDP + ++ N +EK NTIV L+V C R
Sbjct: 84 YFFNNTSVIQDEVLAHRIGLVPLKVDPDMLTWVDSNLPDDEKFTDENTIVLSLNVKCTRN 143
Query: 176 --GPRLTVKTNELKWLPNGSELPLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPM 233
P+ + EL + L+ +P S+ F++ P+ P
Sbjct: 144 PDAPKGSTDPKELYNNAHVYARDLKFEPQGRQSTT----------------FADCPVVPA 187
Query: 234 -LDITIARLGPGQEIELEAHAVKGIGKTHAKWSPVATAWYRMLPEIVLLEDVEDEDAEKL 292
DI +A+L PGQEI L+AH + GIG HAK+SPV+TA YR+LP+I +L+ ++ E A +
Sbjct: 188 DPDILLAKLRPGQEISLKAHCILGIGGDHAKFSPVSTASYRLLPQINILQPIKGESARRF 247
Query: 293 VKTCPVNVFDIEDIGSGKKRATVAQPRACTLCRECLRCGEEWEKRVSIRRVKDHFI 348
K P V I++ G A V R T+ RE LR EE+ +V + RV++HFI
Sbjct: 248 QKCFPPGVIGIDE---GSDEAYVKDARKDTVSREVLRY-EEFADKVKLGRVRNHFI 299
>gi|6325367|ref|NP_015435.1| Rpc40p [Saccharomyces cerevisiae S288c]
gi|133369|sp|P07703.1|RPAC1_YEAST RecName: Full=DNA-directed RNA polymerases I and III subunit RPAC1;
Short=RNA polymerases I and III subunit AC1; AltName:
Full=C37; AltName: Full=DNA-directed RNA polymerases I
and III 40 kDa polypeptide; Short=AC40; Short=C40
gi|172474|gb|AAA34999.1| RNA polymerase C-40 [Saccharomyces cerevisiae]
gi|914981|gb|AAB68080.1| Rpc40p: RNA Polymerases I and III 40 kD subunit (Swiss Prot.
accession number P07703) [Saccharomyces cerevisiae]
gi|151942887|gb|EDN61233.1| AC40 [Saccharomyces cerevisiae YJM789]
gi|256269060|gb|EEU04397.1| Rpc40p [Saccharomyces cerevisiae JAY291]
gi|285815633|tpg|DAA11525.1| TPA: Rpc40p [Saccharomyces cerevisiae S288c]
gi|323306842|gb|EGA60127.1| Rpc40p [Saccharomyces cerevisiae FostersO]
gi|349581913|dbj|GAA27070.1| K7_Rpc40p [Saccharomyces cerevisiae Kyokai no. 7]
gi|392296113|gb|EIW07216.1| Rpc40p [Saccharomyces cerevisiae CEN.PK113-7D]
Length = 335
Score = 192 bits (489), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 118/296 (39%), Positives = 168/296 (56%), Gaps = 27/296 (9%)
Query: 60 SMGVDNSLQLDHFCNNFRVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKV 119
S +N ++ F +F V + L + FDLI ID +IANAFRRI+I+E+P++A E V
Sbjct: 24 SKDAENEWNVEKFKKDFEVNISSLDAREANFDLINIDTSIANAFRRIMISEVPSVAAEYV 83
Query: 120 LIANNTSVIQDEVLAHRLGLIPIIVDPRLFEYMSENDTSNEK----NTIVFKLHVLCERG 175
NNTSVIQDEVLAHR+GL+P+ VDP + ++ N +EK NTIV L+V C R
Sbjct: 84 YFFNNTSVIQDEVLAHRIGLVPLKVDPDMLTWVDSNLPDDEKFTDENTIVLSLNVKCTRN 143
Query: 176 --GPRLTVKTNELKWLPNGSELPLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPM 233
P+ + EL + L+ +P S+ F++ P+ P
Sbjct: 144 PDAPKGSTDPKELYNNAHVYARDLKFEPQGRQSTT----------------FADCPVVPA 187
Query: 234 -LDITIARLGPGQEIELEAHAVKGIGKTHAKWSPVATAWYRMLPEIVLLEDVEDEDAEKL 292
DI +A+L PGQEI L+AH + GIG HAK+SPV+TA YR+LP+I +L+ ++ E A +
Sbjct: 188 DPDILLAKLRPGQEISLKAHCILGIGGDHAKFSPVSTASYRLLPQINILQPIKGESARRF 247
Query: 293 VKTCPVNVFDIEDIGSGKKRATVAQPRACTLCRECLRCGEEWEKRVSIRRVKDHFI 348
K P V I++ G A V R T+ RE LR EE+ +V + RV++HFI
Sbjct: 248 QKCFPPGVIGIDE---GSDEAYVKDARKDTVSREVLRY-EEFADKVKLGRVRNHFI 299
>gi|242819534|ref|XP_002487338.1| DNA-directed RNA polymerase I and III subunit Rpc40, putative
[Talaromyces stipitatus ATCC 10500]
gi|218713803|gb|EED13227.1| DNA-directed RNA polymerase I and III subunit Rpc40, putative
[Talaromyces stipitatus ATCC 10500]
Length = 373
Score = 192 bits (489), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 130/312 (41%), Positives = 174/312 (55%), Gaps = 39/312 (12%)
Query: 62 GVDNSLQLDHFCNNFRVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLI 121
G + +++F NNFRV+ + D F L+G+DA+IANAFRRILIAE+PT+A+E V I
Sbjct: 38 GESHEWSVENFQNNFRVDFHKNEPLDASFSLVGLDASIANAFRRILIAEVPTLAVEYVYI 97
Query: 122 ANNTSVIQDEVLAHRLGLIPIIVDPRLFEYM------SENDTSNEK----NTIVFKLHVL 171
NNTSVIQDEVLA RLGLIP+ +M +E D + NT+V +L+V
Sbjct: 98 INNTSVIQDEVLASRLGLIPLKGSIEGLNWMQWFKKPTEEDPKGSEPSDFNTVVLRLNVE 157
Query: 172 CERGGPRLTVKTNELKWLPNGSELPLETKPDSNPSSKPRTYTSFSSSQDLLP-EFSNNPI 230
C NE P G+E P +++ ++ T+ + + P+
Sbjct: 158 C---------SVNEKA--PPGAEDPRIRYHNAHIYARDITFHPQGRQTNYFTGDGEIQPV 206
Query: 231 RPMLDITIARLGPGQEIELEAHAVKGIGKTHAKWSPVATAWYRMLPEIVLLEDVEDEDAE 290
P DI IA+L PGQ IELE H VKGIG HAK+SPVATA YR+LPEI +L + EDA+
Sbjct: 207 NP--DILIAKLRPGQVIELEMHCVKGIGADHAKFSPVATATYRLLPEIRILRPIIGEDAK 264
Query: 291 KLVKTCPVNVFDIEDI--------GS------GKKRATVAQPRACTLCRECLRCGEEWEK 336
K K P V E I GS G+ +A V P T+ RECLR +E++
Sbjct: 265 KFAKCFPKGVIGFEKITPAEAAQKGSGYEGHTGEDKAVVVDPFKDTVSRECLR-HDEFKD 323
Query: 337 RVSIRRVKDHFI 348
+V + RV+DHFI
Sbjct: 324 KVKLGRVRDHFI 335
>gi|365762578|gb|EHN04112.1| Rpc40p [Saccharomyces cerevisiae x Saccharomyces kudriavzevii VIN7]
Length = 323
Score = 192 bits (489), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 118/296 (39%), Positives = 168/296 (56%), Gaps = 27/296 (9%)
Query: 60 SMGVDNSLQLDHFCNNFRVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKV 119
S +N ++ F +F V + L + FDLI ID +IANAFRRI+I+E+P++A E V
Sbjct: 24 SKDAENEWNVEKFKKDFEVNISSLDAREANFDLINIDTSIANAFRRIMISEVPSVAAEYV 83
Query: 120 LIANNTSVIQDEVLAHRLGLIPIIVDPRLFEYMSENDTSNEK----NTIVFKLHVLCERG 175
NNTSVIQDEVLAHR+GL+P+ VDP + ++ N +EK NTIV L+V C R
Sbjct: 84 YFFNNTSVIQDEVLAHRIGLVPLKVDPDMLTWVDSNLPDDEKFTDENTIVLSLNVKCTRN 143
Query: 176 --GPRLTVKTNELKWLPNGSELPLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPM 233
P+ + EL + L+ +P S+ F++ P+ P
Sbjct: 144 PDAPKGSTDPKELYNNAHVYARDLKFEPQGRQSTT----------------FADCPVVPA 187
Query: 234 -LDITIARLGPGQEIELEAHAVKGIGKTHAKWSPVATAWYRMLPEIVLLEDVEDEDAEKL 292
DI +A+L PGQEI L+AH + GIG HAK+SPV+TA YR+LP+I +L+ ++ E A +
Sbjct: 188 DPDILLAKLRPGQEISLKAHCILGIGGDHAKFSPVSTASYRLLPQINILQPIKGESARRF 247
Query: 293 VKTCPVNVFDIEDIGSGKKRATVAQPRACTLCRECLRCGEEWEKRVSIRRVKDHFI 348
K P V I++ G A V R T+ RE LR EE+ +V + RV++HFI
Sbjct: 248 QKCFPPGVIGIDE---GSDEAYVKDARKDTVSREVLRY-EEFADKVKLGRVRNHFI 299
>gi|134056600|emb|CAK47675.1| unnamed protein product [Aspergillus niger]
Length = 359
Score = 192 bits (489), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 122/303 (40%), Positives = 175/303 (57%), Gaps = 35/303 (11%)
Query: 62 GVDNSLQLDHFCNNFRVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLI 121
G + L F N+ +++ R + + F LIG+DA+IANAFRRIL+AE+P++AIE V +
Sbjct: 38 GESHEWSLAKFKNDLKIDFHRNERFESSFSLIGVDASIANAFRRILMAEVPSIAIEYVFV 97
Query: 122 ANNTSVIQDEVLAHRLGLIPI------IVDPRLFEYMSENDTSN----EKNTIVFKLHVL 171
NNTSVIQDEVLA RLGLIP+ I R F+ +++D + + NTIV +L V
Sbjct: 98 HNNTSVIQDEVLAQRLGLIPLKGSVEGINWMRWFKKPTDDDPNGSSPADYNTIVLRLDVE 157
Query: 172 CERGGPRLTVKTNELKWLPNGSELPLETKP-----DSNPSSKPRTYTSFSSSQDLLPEFS 226
C + PN P ET P +++ +K T+ +
Sbjct: 158 CTKN--------------PNAD--PEETDPRKLYKNAHVYAKDITFHPVGRQEQFFA--G 199
Query: 227 NNPIRPM-LDITIARLGPGQEIELEAHAVKGIGKTHAKWSPVATAWYRMLPEIVLLEDVE 285
++ I+P+ DI +A+L PGQ IE+E H +KGIG HAK+SPVATA YR+LP+I +L +
Sbjct: 200 DDAIQPVNPDILVAKLRPGQAIEMELHCIKGIGADHAKFSPVATATYRLLPDIKILRPII 259
Query: 286 DEDAEKLVKTCPVNVFDIEDIGSGKKRATVAQPRACTLCRECLRCGEEWEKRVSIRRVKD 345
+DA+K K P V +E G+ +A V P T+ RECLR EE++ +V + RV+D
Sbjct: 260 GDDAKKFAKCFPSGVIGLEKGHEGELKAVVVDPFKDTVSRECLR-HEEFQGKVKLGRVRD 318
Query: 346 HFI 348
HFI
Sbjct: 319 HFI 321
>gi|159129762|gb|EDP54876.1| DNA-directed RNA polymerase I and III subunit Rpc40, putative
[Aspergillus fumigatus A1163]
Length = 414
Score = 192 bits (488), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 125/316 (39%), Positives = 176/316 (55%), Gaps = 46/316 (14%)
Query: 62 GVDNSLQLDHFCNNFRVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLI 121
G + L+ F + FRVE R + F LIG+DA+IANAFRRIL+AE+PT+AIE V +
Sbjct: 78 GESHEWNLEKFKDGFRVEFHRNDPFESSFSLIGLDASIANAFRRILMAEVPTLAIEYVFV 137
Query: 122 ANNTSVIQDEVLAHRLGLIPIIVDP------RLFEYMSEND-----TSNEKNTIVFKLHV 170
NNTSVIQDEVLA RLGLIP+ R F+ +E+D T + NTIV +L V
Sbjct: 138 HNNTSVIQDEVLASRLGLIPLKGSVEGLNWMRWFKKPTEDDPESGSTPADYNTIVLRLDV 197
Query: 171 LCERGGPRLTVKTNELKWLPN---GSELPLETKPDSNPSSKPRTYTSFSSSQDLLP-EFS 226
C PN G + P + +++ +K T+ + + +
Sbjct: 198 ECTEN--------------PNAAPGEDDPRKLYKNAHVYAKDITFHPVGRQEQFFTGDGA 243
Query: 227 NNPIRPMLDITIARLGPGQEIELEAHAVKGIGKTHAKWSPVATAWYRMLPEIVLLEDVED 286
P+ P DI IA+L PGQ+I++E H +KGIG HAK+SPVATA YR++P+I +L +
Sbjct: 244 IQPVNP--DILIAKLRPGQKIDMELHCIKGIGADHAKFSPVATATYRLMPDIKILRPIIG 301
Query: 287 EDAEKLVKTCPVNVFDIEDIGS--------------GKKRATVAQPRACTLCRECLRCGE 332
EDA+K K P V ++E + S G+ +A V P T+ RECLR E
Sbjct: 302 EDAKKFAKCFPKGVIELEPVTSREAAQKGSEYEGRAGEMKAVVRDPFKDTVSRECLRH-E 360
Query: 333 EWEKRVSIRRVKDHFI 348
E++ +V + R++DHFI
Sbjct: 361 EFQGKVKLGRIRDHFI 376
>gi|344303022|gb|EGW33296.1| RNA polymerase III (C) subunit [Spathaspora passalidarum NRRL
Y-27907]
Length = 335
Score = 192 bits (488), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 128/322 (39%), Positives = 169/322 (52%), Gaps = 35/322 (10%)
Query: 32 IEFQRTRVQCNLDAPIHTENVMYSGAYASMGVDNSLQLDHFCNNFRVEVIRLTKDDMEFD 91
IE+ R + D P H SG D S ++ F NF +++ LT+ FD
Sbjct: 8 IEYNRVTNTSSTDFPGHQA----SG-------DFSWDIEKFKQNFDIDIKYLTERTANFD 56
Query: 92 LIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRLGLIPIIVDPRLFEY 151
L+ ID +IANAFRRI+IAE+P++A E V + NTSVIQDEVLAHR+GLIP+ VDP L +
Sbjct: 57 LVHIDTSIANAFRRIMIAEVPSVAAEAVYMFMNTSVIQDEVLAHRIGLIPLKVDPDLLSW 116
Query: 152 M----SENDTSNEKNTIVFKLHVLCERGGPRLTVKTNELKWLPNGSELPLETKPDSNPSS 207
+ EN+ E NTIV L V+C + PN + K S
Sbjct: 117 VDKTQDENNRYTEDNTIVLSLDVVCTKN--------------PNAPKNSTNAKELYRNSH 162
Query: 208 KPRTYTSFSSSQDLLPEFSNNPIRPM-LDITIARLGPGQEIELEAHAVKGIGKTHAKWSP 266
+ F L +F NNP+ P +I +A+L PGQEI L AH + GIG HAK+SP
Sbjct: 163 VYASDLKFEPHGSQLEKFKNNPVVPADPNILLAKLRPGQEISLRAHCILGIGSDHAKFSP 222
Query: 267 VATAWYRMLPEIVLLEDVEDEDAEKLVKTCPVNVFDIEDIGSGKKRATVAQPRACTLCRE 326
VATA YR++P I + E + A K P V I D G A V R T+ RE
Sbjct: 223 VATASYRLMPVIDIREPITGALAVNFQKCFPPGVIGINDQG----EAYVQDARKDTVSRE 278
Query: 327 CLRCGEEWEKRVSIRRVKDHFI 348
LR EE++ +V + R +DHFI
Sbjct: 279 VLR-HEEFDGKVKLGRKRDHFI 299
>gi|294894048|ref|XP_002774720.1| DNA-directed RNA polymerase I, putative [Perkinsus marinus ATCC
50983]
gi|239880227|gb|EER06536.1| DNA-directed RNA polymerase I, putative [Perkinsus marinus ATCC
50983]
Length = 310
Score = 192 bits (488), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 107/266 (40%), Positives = 148/266 (55%), Gaps = 42/266 (15%)
Query: 94 GIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRLGLIPIIVDPRLFEYMS 153
GID IANA RRI+IAE+PT+AIEK + NT VI DE+LAHRLGL+PI D +
Sbjct: 17 GIDPPIANALRRIMIAEIPTIAIEKCYVYQNTGVIHDEILAHRLGLVPIYCDIDSLKMRD 76
Query: 154 EN-------DTSNEKNTIVFKLHVLCERGGP---RLTVKTNELKWLPNGSELPLETKPDS 203
E+ D ++ I F L +C + P + V + +LKW+P +E
Sbjct: 77 EDAPPEQRDDVTDPDTWICFSLEKVCPQSHPPRESMPVYSGDLKWVPLNAEQE------- 129
Query: 204 NPSSKPRTYTSFSSSQDLLPEFSNNPIRPMLD-ITIARLGPGQEIELEAHAVKGIGKTHA 262
+ ++P RP+ D + I +L GQE+E++ KGIGK HA
Sbjct: 130 -------------------ERYKDDPPRPVYDDVLITKLRCGQELEIKCFCCKGIGKIHA 170
Query: 263 KWSPVATAWYRMLPEIVLLEDVEDEDAEKLVKTCPVNVFDIEDIGSGKKRATVAQPRACT 322
KWSPV TA YR++P+I+L E +E +A+K CP+ VFDIED A V PRACT
Sbjct: 171 KWSPVCTATYRLMPDIILKEPIEGAEAKKFKSVCPMGVFDIED-----GAAVVKNPRACT 225
Query: 323 LCRECLRCGEEWEKRVSIRRVKDHFI 348
CR+C+ G + +VS+ ++KDHFI
Sbjct: 226 TCRQCIEPGNGFADKVSLGKLKDHFI 251
>gi|224009616|ref|XP_002293766.1| dna-directed RNA polymerase I 40kDa polypeptide, rpo1-1-like
protein [Thalassiosira pseudonana CCMP1335]
gi|220970438|gb|EED88775.1| dna-directed RNA polymerase I 40kDa polypeptide, rpo1-1-like
protein [Thalassiosira pseudonana CCMP1335]
Length = 351
Score = 192 bits (488), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 125/313 (39%), Positives = 179/313 (57%), Gaps = 47/313 (15%)
Query: 64 DNSLQLDHFCNNFRVEVI-RLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIA 122
D + L NF + V+ R +K+++ F+++G+D + ANA RRI+IAE+PTMA+E V +
Sbjct: 32 DGTEFLSRIRQNFSLRVLERPSKNELVFEVVGVDVSFANALRRIMIAEIPTMALEHVYMW 91
Query: 123 NNTSVIQDEVLAHRLGLIPIIVDPRLF-EYMSEND-----TSNEKNTIVFKLH---VLCE 173
NN+S+I DEVL+HRLGL+P+ VDPRLF EY + D + ++NTIVF+L+ L
Sbjct: 92 NNSSLIHDEVLSHRLGLVPLNVDPRLFDEYGVDVDEVGEVAATDRNTIVFRLNEATSLHS 151
Query: 174 RGGPRLTV------------KTNELKWLPNGSELPLETKPDSNPSSKPRTYTSFSSSQDL 221
+ TV T +L W P GS+L T+F
Sbjct: 152 SSNQQKTVIDSPHRPFTKHIYTRDLLWAPQGSQL-----------------TNFPLHSTG 194
Query: 222 LPEFSNNPIRPML-DITIARLGPGQEIELEAHAVKGIGKTHAKWSPVATAWYRMLPEIVL 280
+ IRP+ DI +A+L PGQ IELEAHA KG+GK HAK+SPVATA YR++P I +
Sbjct: 195 VGSGVGGGIRPISEDILLAKLRPGQVIELEAHARKGVGKDHAKFSPVATASYRLMPHIEI 254
Query: 281 LEDVEDEDAEKLVKTCPVNVF-----DIEDIGSGKKRATVAQPRACTLCRECLRCGEEWE 335
++ + DE AE+LV VF D ED G K +A ++ P ACT+ R +R +
Sbjct: 255 VKPIYDELAEELVNWFEPGVFKLVPADDED-GGHKVKAELSNPYACTMSRNYMR-NPTLK 312
Query: 336 KRVSIRRVKDHFI 348
+ + + RV +HFI
Sbjct: 313 ESIKMSRVPNHFI 325
>gi|169774489|ref|XP_001821712.1| DNA-directed RNA polymerases I and III subunit RPAC1 [Aspergillus
oryzae RIB40]
gi|238496959|ref|XP_002379715.1| DNA-directed RNA polymerase I and III subunit Rpc40, putative
[Aspergillus flavus NRRL3357]
gi|83769575|dbj|BAE59710.1| unnamed protein product [Aspergillus oryzae RIB40]
gi|220694595|gb|EED50939.1| DNA-directed RNA polymerase I and III subunit Rpc40, putative
[Aspergillus flavus NRRL3357]
Length = 373
Score = 192 bits (487), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 133/347 (38%), Positives = 191/347 (55%), Gaps = 42/347 (12%)
Query: 28 LPPHIEFQRTR-VQCNLDAPIHTENVMYSGAYASMGVDNSLQLDHFCNNFRVEVIRLTKD 86
+P E R R V NL+ + + + G + G + L+ F N F VE R +
Sbjct: 5 VPSQAELDRRRLVDINLETVSNIPSTDFPGHWP--GESHEWNLEKFRNEFNVEFHRNERF 62
Query: 87 DMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRLGLIPI--IV 144
+ F LIG+DA+IANAFRRI++AE+P++AIE V + NNTSVIQDEVLA RLGLIP+ V
Sbjct: 63 ESSFSLIGVDASIANAFRRIVMAEVPSVAIEFVFVHNNTSVIQDEVLAQRLGLIPLKGSV 122
Query: 145 DP----RLFEYMSENDTS----NEKNTIVFKLHVLCERGGPRLTVKTNELKWLPNGSELP 196
D R F+ +E+D ++ NTIV +L + C + P N+ P
Sbjct: 123 DGINWMRWFKKATEDDPEGSDPSDYNTIVLRLDIECTK-NPNADATEND----------P 171
Query: 197 LETKPDSNPSSKPRTYTSFSSSQDLLP-EFSNNPIRPMLDITIARLGPGQEIELEAHAVK 255
+ +++ ++ T+ + E + P+ P DI IA+L PGQ+I+LE H +K
Sbjct: 172 RKLYKNAHVYARDITFHPVGRQEQFFTGEDAIQPVNP--DILIAKLRPGQKIDLEMHCIK 229
Query: 256 GIGKTHAKWSPVATAWYRMLPEIVLLEDVEDEDAEKLVKTCPVNVFDIEDI--------G 307
GIG HAK+SPVATA YR+LP+I +L + EDA+K K P V +E + G
Sbjct: 230 GIGADHAKFSPVATASYRLLPDIQILRPILGEDAKKFAKCFPKGVIGLEPVTREEAAKQG 289
Query: 308 S------GKKRATVAQPRACTLCRECLRCGEEWEKRVSIRRVKDHFI 348
S G+ +A V T+ RECLR EE++ +V + RV+DHFI
Sbjct: 290 SGYEGHEGETKAVVRDAFKDTVSRECLRH-EEFQGKVKLGRVRDHFI 335
>gi|392573616|gb|EIW66755.1| hypothetical protein TREMEDRAFT_34640 [Tremella mesenterica DSM
1558]
Length = 347
Score = 192 bits (487), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 120/308 (38%), Positives = 170/308 (55%), Gaps = 42/308 (13%)
Query: 54 YSGAYASMGVDNSLQLDHFCNNFRVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPT 113
+ G Y G D+S L F N V + RLT +EFDL+G+DA+IANA RR+LIAE+PT
Sbjct: 28 FPGHYP--GEDHSWNLKRFKENLIVSLQRLTPSTLEFDLVGVDASIANALRRVLIAEVPT 85
Query: 114 MAIEKVLIANNTSVIQDEVLAHRLGLIPIIVDPRLFEYMSE-NDTSNEKNTIVFKLHVLC 172
+AIE V + NNTS++QDEVL HRLGL+P+ +DPR + + N + + +T+VF+L V C
Sbjct: 86 VAIEDVYVWNNTSIMQDEVLCHRLGLVPLRIDPREMIFRANPNAGALDTDTVVFQLRVKC 145
Query: 173 ER-------GGPRLT-----VKTNELKWLPNGSELPLETKPDSNPSSKPRTYTSFSSSQD 220
+R P+ V T L+W P G++ T + +
Sbjct: 146 DRQPGTQGETDPKRKYWDSDVYTGMLEWEPAGAQ-----------------KTKWKRKEP 188
Query: 221 LLPEFSNNPIRPMLDITIARLGPGQEIELEAHAVKGIGKTHAKWSPVATAWYRMLPEIVL 280
P+ P DI + +L PGQ I+L A KG G HAK+SPVATA YR+LP I++
Sbjct: 189 -------KPVDP--DILLCKLRPGQLIDLTCFARKGTGADHAKFSPVATASYRLLPHIII 239
Query: 281 LEDVEDEDAEKLVKTCPVNVFDIEDIGSGKKRATVAQPRACTLCRECLRCGEEWEKRVSI 340
+ E +K V++ P V IE G+ + V R T+ RE LR E+E +V +
Sbjct: 240 RSPIPVEHQQKFVQSFPPGVIGIEKDKRGQPQCVVKNSRRDTVSREVLRHA-EFEDKVQL 298
Query: 341 RRVKDHFI 348
R++DHFI
Sbjct: 299 TRIRDHFI 306
>gi|146322984|ref|XP_755705.2| DNA-directed RNA polymerase I and III subunit Rpc40 [Aspergillus
fumigatus Af293]
gi|129558558|gb|EAL93667.2| DNA-directed RNA polymerase I and III subunit Rpc40, putative
[Aspergillus fumigatus Af293]
Length = 374
Score = 192 bits (487), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 131/351 (37%), Positives = 189/351 (53%), Gaps = 49/351 (13%)
Query: 28 LPPHIEFQRTRV-QCNLDAPIHTENVMYSGAYASMGVDNSLQLDHFCNNFRVEVIRLTKD 86
+P E R R+ N + + + + G + G + L+ F + FRVE R
Sbjct: 5 IPSQEELDRRRIIGINPETVTNIPSTDFPGHWP--GESHEWNLEKFKDGFRVEFHRNDPF 62
Query: 87 DMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRLGLIPIIVDP 146
+ F LIG+DA+IANAFRRIL+AE+PT+AIE V + NNTSVIQDEVLA RLGLIP+
Sbjct: 63 ESSFSLIGLDASIANAFRRILMAEVPTLAIEYVFVHNNTSVIQDEVLASRLGLIPLKGSV 122
Query: 147 ------RLFEYMSEND-----TSNEKNTIVFKLHVLCERGGPRLTVKTNELKWLPN---G 192
R F+ +E+D T + NTIV +L V C PN G
Sbjct: 123 EGLNWMRWFKKPTEDDPESGSTPADYNTIVLRLDVECTEN--------------PNAAPG 168
Query: 193 SELPLETKPDSNPSSKPRTYTSFSSSQDLLP-EFSNNPIRPMLDITIARLGPGQEIELEA 251
+ P + +++ +K T+ + + + P+ P DI IA+L PGQ+I++E
Sbjct: 169 EDDPRKLYKNAHVYAKDITFHPVGRQEQFFTGDGAIQPVNP--DILIAKLRPGQKIDMEL 226
Query: 252 HAVKGIGKTHAKWSPVATAWYRMLPEIVLLEDVEDEDAEKLVKTCPVNVFDIEDIGS--- 308
H +KGIG HAK+SPVATA YR++P+I +L + EDA+K K P V ++E + S
Sbjct: 227 HCIKGIGADHAKFSPVATATYRLMPDIKILRPIIGEDAKKFAKCFPKGVIELEPVTSREA 286
Query: 309 -----------GKKRATVAQPRACTLCRECLRCGEEWEKRVSIRRVKDHFI 348
G+ +A V P T+ RECLR EE++ +V + R++DHFI
Sbjct: 287 AQKGSEYEGRAGEMKAVVRDPFKDTVSRECLRH-EEFQGKVKLGRIRDHFI 336
>gi|270010836|gb|EFA07284.1| hypothetical protein TcasGA2_TC014519 [Tribolium castaneum]
Length = 335
Score = 191 bits (486), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 122/301 (40%), Positives = 169/301 (56%), Gaps = 46/301 (15%)
Query: 63 VDNSLQLDHFCNNFRVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIA 122
+D L F FRV ++R ++++EFDLIGI +AN FRR++++++PTMAIEKV I
Sbjct: 30 LDEKWDLKTFKKRFRVVIVRSEENELEFDLIGIHPFLANTFRRLMLSDVPTMAIEKVHIL 89
Query: 123 NNTSVIQDEVLAHRLGLIPIIVDPRLFEYMSE-NDTSNEKNTIVFKLHVLC--------- 172
NNTS+IQDEVLAHRLGLIP+ DPRLFE ++ E++T+ F L + C
Sbjct: 90 NNTSIIQDEVLAHRLGLIPLKADPRLFEMKTDPTAEGTEQDTLEFALKIKCTNNKDSSKD 149
Query: 173 ----ERGGPRLTVKTNELKWLPNGSELPLETKPDSNPSSKPRTYTSFSSSQDLLPEFSN- 227
E V + +KW+P G + K R FS+
Sbjct: 150 SLRAEDMYKNNNVYSKHIKWVPIGKQ-------------KER--------------FSDV 182
Query: 228 NPIRPMLDITIARLGPGQEIELEAHAVKGIGKTHAKWSPVATAWYRMLPEIVLLEDVEDE 287
PI P DI IA++ PG E++L+ AVK G+ HAK+SPVATA+YR+LP+I LL +VE E
Sbjct: 183 GPIHP--DILIAKMRPGHELDLKLLAVKSNGRDHAKFSPVATAFYRLLPDIKLLREVEGE 240
Query: 288 DAEKLVKTCPVNVFDIEDIGSGKKRATVAQPRACTLCRECLRCGEEWEKRVSIRRVKDHF 347
AE+L K V I G+K A VA R T R R E+ + V++ +++DHF
Sbjct: 241 AAERLQKCFSPGVISIRH-EKGRKYAVVANARYDTGSRNVFRY-EDLKDAVAMTKIQDHF 298
Query: 348 I 348
I
Sbjct: 299 I 299
>gi|50307479|ref|XP_453719.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
gi|49642853|emb|CAH00815.1| KLLA0D14861p [Kluyveromyces lactis]
Length = 334
Score = 191 bits (486), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 115/302 (38%), Positives = 171/302 (56%), Gaps = 48/302 (15%)
Query: 64 DNSLQLDHFCNNFRVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIAN 123
DNS L+ F F V++ L + ++ FDL+ +D +IANAFRRI+I+E+P++A E V N
Sbjct: 28 DNSWDLEKFKETFDVQIESLDEREVNFDLVHVDTSIANAFRRIMISEVPSVAPEYVYFFN 87
Query: 124 NTSVIQDEVLAHRLGLIPIIVDPRLFEY----MSENDTSNEKNTIVFKLHVLCERG---- 175
NTSV+QDEVLAHR+GL+P+ VDP + + + E++ ++NTIV L+V C R
Sbjct: 88 NTSVLQDEVLAHRIGLVPLKVDPDMLSWVDTSLPESERFTDENTIVMSLNVKCTRNPDAP 147
Query: 176 ----GPRLTVK-----TNELKWLPNGSELPLETKPDSNPSSKPRTYTSFSSSQDLLPEFS 226
P++ + +LK+ P G ++ K P +
Sbjct: 148 KDCEDPKVLYRNAHIYARDLKFEPQGKQVEQFAK---------------------CPVVA 186
Query: 227 NNPIRPMLDITIARLGPGQEIELEAHAVKGIGKTHAKWSPVATAWYRMLPEIVLLEDVED 286
+P DI +A+L PGQEI L AH + GIG HAK+SPV+TA YR+LP I + + +
Sbjct: 187 ADP-----DILLAKLRPGQEISLRAHCILGIGADHAKFSPVSTASYRLLPHIQITQPITG 241
Query: 287 EDAEKLVKTCPVNVFDIEDIGSGKKRATVAQPRACTLCRECLRCGEEWEKRVSIRRVKDH 346
+DA+K VK P V D+ + G A + PR T+ RE LR +E++ +V + RV+DH
Sbjct: 242 DDAKKFVKCFPKGVADVNEKG----EAYIKDPRKDTVSREVLR-HDEFQGKVKLGRVRDH 296
Query: 347 FI 348
FI
Sbjct: 297 FI 298
>gi|425767889|gb|EKV06440.1| DNA-directed RNA polymerase I and III subunit Rpc40, putative
[Penicillium digitatum Pd1]
gi|425769702|gb|EKV08188.1| DNA-directed RNA polymerase I and III subunit Rpc40, putative
[Penicillium digitatum PHI26]
Length = 374
Score = 191 bits (486), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 131/343 (38%), Positives = 183/343 (53%), Gaps = 43/343 (12%)
Query: 33 EFQRTRV-QCNLDAPIHTENVMYSGAYASMGVDNSLQLDHFCNNFRVEVIRLTKDDMEFD 91
E QR R+ N + + + + G + G + LD F NNF+VE R + + F
Sbjct: 10 ELQRRRIIGINAETVTNIPSTDFPGHWP--GESHGWALDEFKNNFKVEFHRNERFEASFS 67
Query: 92 LIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRLGLIPIIVDPRLFEY 151
LIG+D A+ANAFRRIL+AE+PT+AIE I NNTSVIQDEVLA RLGLIP+ +
Sbjct: 68 LIGLDPAVANAFRRILMAEIPTIAIEDCFIHNNTSVIQDEVLAQRLGLIPLKGSIEGINW 127
Query: 152 M------SENDTSNEK-----NTIVFKLHVLCERGGPRLTVKTNELKWLPNGSELPLETK 200
M SE+ T E NTIV L V C + ++ + P +
Sbjct: 128 MHWYKKASEDGTEEEDGPCDFNTIVLHLDVECYKN-----------EYADKDEQDPRKLY 176
Query: 201 PDSNPSSKPRTYTSFS-SSQDLLPEFSNNPIRPMLDITIARLGPGQEIELEAHAVKGIGK 259
+++ +K Y Q + + + P+ P DI IA+L PGQ+IE+E H KGIG
Sbjct: 177 TNAHVYAKDLMYMPVGRQEQYFVGDGAIAPVNP--DILIAKLRPGQKIEMELHCQKGIGA 234
Query: 260 THAKWSPVATAWYRMLPEIVLLEDVEDEDAEKLVKTCPVNVFDIEDIGS----------- 308
HAK+SPVATA YR+LP+I +L + EDA+K K P V +E + S
Sbjct: 235 DHAKFSPVATASYRLLPDINILRPIIGEDAKKFAKCFPKGVIGLEPVTSAEAAQRGSGYE 294
Query: 309 ---GKKRATVAQPRACTLCRECLRCGEEWEKRVSIRRVKDHFI 348
G+++A V T+ RECLR +E++ +V + RV+DHFI
Sbjct: 295 GHAGEQKAVVKDAFNDTVSRECLR-HDEFQGKVKLGRVRDHFI 336
>gi|452979634|gb|EME79396.1| hypothetical protein MYCFIDRAFT_216428 [Pseudocercospora fijiensis
CIRAD86]
Length = 392
Score = 191 bits (486), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 134/345 (38%), Positives = 183/345 (53%), Gaps = 37/345 (10%)
Query: 35 QRTRVQCNLDAPIHTENVMYSGAYASMGVDNSLQLDHFCNNFRVEVIRLTKDDMEFDLIG 94
QR V N + +T + G Y D++ L+ F NN +VE + + + F LIG
Sbjct: 14 QRRIVNINPETVTNTASTDIPGHYGP-AQDDTWNLERFRNNLQVEFRQNEQFNSAFSLIG 72
Query: 95 IDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRLGLIPIIVDPRLFEYM-- 152
+DA+IANA+RRIL+AELPT+AIE V I +NTS+IQDEVLAHRLGLIP+ +M
Sbjct: 73 VDASIANAYRRILLAELPTLAIEDVFIFDNTSIIQDEVLAHRLGLIPLTGGKDGLRWMHW 132
Query: 153 ---------------------SENDTSN----EKNTIVFKLHVLCERGGPRLTVKTNELK 187
DTS+ + NT+V L+V C R + + K
Sbjct: 133 FKKPPPQSDYAARALWEQEQEESGDTSSSVNSDFNTVVMTLNVTC-RWKNKEEDGIDGKK 191
Query: 188 WLPNGSELPLETKPDSNPSSKPRTYTSFSSSQDLLPEF--SNNPIRPML-DITIARLGPG 244
GS P E +SN + T F L E+ N IRP+ +I IA+L PG
Sbjct: 192 VAQEGSTDPTEKYVNSNVYAHQMT---FEPQGKLQREYFGGENAIRPVNPNILIAKLRPG 248
Query: 245 QEIELEAHAVKGIGKTHAKWSPVATAWYRMLPEIVLLEDVEDEDAEKLVKTCPVNVFDIE 304
Q I + H KGIG HAK+SPVATA YR+LP+I + + + DA+ K P V +E
Sbjct: 249 QTINVRMHCCKGIGADHAKFSPVATASYRLLPDIKITKPIVGADAKAFQKCFPRGVIGLE 308
Query: 305 DIG-SGKKRATVAQPRACTLCRECLRCGEEWEKRVSIRRVKDHFI 348
D SG K+A V P T+ RECLR +E++ +V + R++DHFI
Sbjct: 309 DDKESGSKKAVVIDPYKDTVSRECLRY-DEFKDKVKLGRIRDHFI 352
>gi|119481605|ref|XP_001260831.1| DNA-directed RNA polymerase I and III subunit Rpc40, putative
[Neosartorya fischeri NRRL 181]
gi|119408985|gb|EAW18934.1| DNA-directed RNA polymerase I and III subunit Rpc40, putative
[Neosartorya fischeri NRRL 181]
Length = 374
Score = 191 bits (485), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 132/351 (37%), Positives = 189/351 (53%), Gaps = 49/351 (13%)
Query: 28 LPPHIEFQRTR-VQCNLDAPIHTENVMYSGAYASMGVDNSLQLDHFCNNFRVEVIRLTKD 86
+P E R R V N + + + + G + G + L+ F + FRVE R
Sbjct: 5 IPSQEELDRRRIVGINPETVTNIPSTDFPGHWP--GESHEWNLETFRDGFRVEFHRNDPF 62
Query: 87 DMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRLGLIPIIVDP 146
+ F LIG+DA+IANAFRRIL+AE+PT+AIE V + NNTSVIQDEVLA RLGLIP+
Sbjct: 63 ESSFSLIGLDASIANAFRRILMAEVPTLAIEYVFVHNNTSVIQDEVLASRLGLIPLKGSV 122
Query: 147 ------RLFEYMSEND-----TSNEKNTIVFKLHVLCERGGPRLTVKTNELKWLPN---G 192
R F+ +E+D T + NTIV +L V C PN G
Sbjct: 123 EGLNWMRWFKKPTEDDPESGSTPADYNTIVLRLDVECTEN--------------PNAAPG 168
Query: 193 SELPLETKPDSNPSSKPRTYTSFSSSQDLLP-EFSNNPIRPMLDITIARLGPGQEIELEA 251
+ P + +++ +K T+ + + + P+ P DI IA+L PGQ+I++E
Sbjct: 169 EDDPRKLYKNAHVYAKDITFHPVGRQEQFFTGDGAIQPVNP--DILIAKLRPGQKIDMEL 226
Query: 252 HAVKGIGKTHAKWSPVATAWYRMLPEIVLLEDVEDEDAEKLVKTCPVNVFDIEDIGS--- 308
H +KGIG HAK+SPVATA YR++P+I +L + EDA+K K P V ++E + S
Sbjct: 227 HCIKGIGADHAKFSPVATATYRLMPDIKILRPIIGEDAKKFAKCFPKGVVELEPVTSREA 286
Query: 309 -----------GKKRATVAQPRACTLCRECLRCGEEWEKRVSIRRVKDHFI 348
G+ +A V P T+ RECLR EE++ +V + R++DHFI
Sbjct: 287 AQKGSEYEGRAGEMKAVVRDPFKDTVSRECLRH-EEFQGKVKLGRIRDHFI 336
>gi|453085895|gb|EMF13938.1| DNA-directed RNA polymerases I and III 40 kDa polypeptide
[Mycosphaerella populorum SO2202]
Length = 393
Score = 191 bits (485), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 133/349 (38%), Positives = 183/349 (52%), Gaps = 44/349 (12%)
Query: 35 QRTRVQCNLDAPIHTENVMYSGAYASMGVDNSLQLDHFCNNFRVEVIRLTKDDMEFDLIG 94
QR V N + + + G Y D++ LD F N R++ + D F L+G
Sbjct: 14 QRRIVNINAETVSNVASTDLPGHYGPKQ-DDTWNLDRFRQNLRIQFHQNKPLDAAFSLVG 72
Query: 95 IDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRLGLIPIIVDPRLFEYMS- 153
+DA++ANA RRI +AELPT+AIE V + +NTS+IQDEVLAHR+GLIP+ +M
Sbjct: 73 VDASVANALRRIALAELPTLAIENVYMYDNTSIIQDEVLAHRMGLIPLKGGKEGLRWMQW 132
Query: 154 ------END---------------------TSNEKNTIVFKLHVLCERGGPRLTVKTNEL 186
E+D T ++ NT+V L V C TV+ + +
Sbjct: 133 FKKTPPESDHAAYAQFMAEQEEEGADRSASTPSDLNTVVLNLKVECRWK----TVEEDGV 188
Query: 187 ---KWLPNGSELPLETKPDSNPSSKPRTYTSFSSSQDLLPEF--SNNPIRPM-LDITIAR 240
K GS P E +SN + T+ Q PEF N IRP+ DI IA+
Sbjct: 189 DGKKLAREGSTDPTEKYVNSNVYAHQITFEPQGQRQ---PEFFSGENAIRPVNPDILIAK 245
Query: 241 LGPGQEIELEAHAVKGIGKTHAKWSPVATAWYRMLPEIVLLEDVEDEDAEKLVKTCPVNV 300
L PGQ I + H VKGIG HAK+SPVATA YR+LP+I + + + DA+ K P V
Sbjct: 246 LRPGQRIHMTMHCVKGIGADHAKFSPVATASYRLLPDIKITQPIVGADAKAFQKCFPKGV 305
Query: 301 FDI-EDIGSGKKRATVAQPRACTLCRECLRCGEEWEKRVSIRRVKDHFI 348
+ ED SG+KRA V P T+ RECLR +E++ +V + R++DHFI
Sbjct: 306 IGLEEDPESGEKRAVVKDPFKDTVSRECLRY-DEFKDKVKLGRIRDHFI 353
>gi|398398399|ref|XP_003852657.1| hypothetical protein MYCGRDRAFT_109462 [Zymoseptoria tritici
IPO323]
gi|339472538|gb|EGP87633.1| hypothetical protein MYCGRDRAFT_109462 [Zymoseptoria tritici
IPO323]
Length = 474
Score = 191 bits (485), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 129/343 (37%), Positives = 184/343 (53%), Gaps = 34/343 (9%)
Query: 36 RTRVQCNLDAPIHTENVMYSGAYASMGVDNSLQLDHFCNNFRVEVIRLTKDDMEFDLIGI 95
R VQ + + T + G Y VD+S L+ F N +VE D F L+G+
Sbjct: 15 RRLVQVGPETVLDTSSTDIPGHYGP-NVDDSWNLERFKQNLKVEFHHNKTYDTAFSLVGV 73
Query: 96 DAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRLGLIPIIVDPRLFEYM--- 152
DA+IANAFRRIL++ELPT+AIE V + +NTS+IQDEVL HRLGLIP+ +++
Sbjct: 74 DASIANAFRRILLSELPTLAIEDVFMFDNTSIIQDEVLCHRLGLIPLTGGREGLQWLRWY 133
Query: 153 ----------------SENDTS---------NEKNTIVFKLHVLCERGGPRLTVKTNELK 187
+E ++ ++ NTIV +L+V C R + + +
Sbjct: 134 RKPPPKDDYAALAAWEAEKESGGIDPASSVPSDYNTIVMELNVEC-RWATQEEDGRDGKQ 192
Query: 188 WLPNGSELPLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPM-LDITIARLGPGQE 246
+GS P E +S+ + T+ + Q L E N IRP+ DI IA+L PGQ
Sbjct: 193 LAKDGSTDPKEKYVNSSVYAHQFTFIPQGNHQPTLFE-GENAIRPVNPDILIAKLRPGQR 251
Query: 247 IELEAHAVKGIGKTHAKWSPVATAWYRMLPEIVLLEDVEDEDAEKLVKTCPVNVFDIE-D 305
I L H +KGIG HAK+SPVATA YR+LP+I + + + A+ K P V IE D
Sbjct: 252 IHLRVHCIKGIGADHAKFSPVATASYRLLPQIDIKSPITGQSAKAFQKCFPRGVIGIEHD 311
Query: 306 IGSGKKRATVAQPRACTLCRECLRCGEEWEKRVSIRRVKDHFI 348
G+K+A V P T+ RECLR +E++ +V + R++DHFI
Sbjct: 312 EALGEKKAVVKDPFKDTVSRECLRY-DEFKNKVKLGRIRDHFI 353
>gi|395534244|ref|XP_003769156.1| PREDICTED: DNA-directed RNA polymerases I and III subunit RPAC1
[Sarcophilus harrisii]
Length = 310
Score = 191 bits (485), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 118/259 (45%), Positives = 158/259 (61%), Gaps = 16/259 (6%)
Query: 91 DLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRLGLIPIIVDPRLFE 150
D G +A+ + ++PTMA+EKV + NNTS++QDE+LAHRLGLIPI DPRLFE
Sbjct: 28 DFPGNYCGFDDAWDQSRFEKVPTMAVEKVFVYNNTSIVQDEILAHRLGLIPIRADPRLFE 87
Query: 151 YMSEND-TSNEKNTIVFKLHVLCERGGPRLTVKTNELKWLPNGSELPLETKPDSNPSSKP 209
Y ++ D E +T+ F+L V C R P+ +++ PN EL L K +K
Sbjct: 88 YRNQGDEDGTEIDTLQFQLKVKCTRN-PQAAKDSSD----PN--ELYLNHKV----YTKH 136
Query: 210 RTYTSFSSSQDLLPEFSNNPIRPMLDITIARLGPGQEIELEAHAVKGIGKTHAKWSPVAT 269
T+ + D+ PE + P+ DI IA+L PGQE++L H VKGIGK HAK+SPVAT
Sbjct: 137 MTWIPLGNQADVFPEGTIRPVHD--DILIAQLRPGQELDLVMHCVKGIGKDHAKFSPVAT 194
Query: 270 AWYRMLPEIVLLEDVEDEDAEKLVKTCPVNVFDIEDIGSGKKRATVAQPRACTLCRECLR 329
A YR+LP+I LL+ VE E AE+L + V ++DI GKK ATVA PR T RE R
Sbjct: 195 ASYRLLPDITLLQPVEGEAAEELSRCFSPGVIQVQDI-KGKKVATVANPRLDTFSREIFR 253
Query: 330 CGEEWEKRVSIRRVKDHFI 348
E +K V + RV+DH+I
Sbjct: 254 -HENLKKLVRLARVRDHYI 271
>gi|84994468|ref|XP_951956.1| DNA-directed RNA polymerases I and III, 40 kDa polypeptide
[Theileria annulata strain Ankara]
gi|65302117|emb|CAI74224.1| DNA-directed RNA polymerases I and III, 40 kDa polypeptide,
putative [Theileria annulata]
Length = 329
Score = 191 bits (485), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 111/299 (37%), Positives = 167/299 (55%), Gaps = 56/299 (18%)
Query: 75 NFRVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLA 134
N +++ ++ T + ++ G+D + ANA RRILI+E+PT+A+E V I NT V+QDE+LA
Sbjct: 32 NLQIKFLKKTPEFSVVEIAGLDVSFANALRRILISEVPTLAVETVQIYQNTGVVQDELLA 91
Query: 135 HRLGLIPIIVDPRLFEYMSENDTS---------NEKNTIVFKLHVLCER--GGPRLTVKT 183
HRLGLIP +DP LF + S + + N+KN++ FKL V + L++ +
Sbjct: 92 HRLGLIPFSIDPDLFNFKSSSKNNHCFADCEEINDKNSVCFKLKVKYNKFDQSEYLSIYS 151
Query: 184 NELKWLPNGSELPLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPML-DITIARLG 242
N+LKW+P S++Q+++ F +NP +P+ DI I +LG
Sbjct: 152 NDLKWVP------------------------LSNNQEIM--FKDNPPKPVYGDILITKLG 185
Query: 243 PGQEIELEAHAVKGIGKTHAKWSPVATAWYRMLPEIV-----LLEDVEDE-----DAEKL 292
PGQEI+L + KGIGK H+KWSPV+TA Y+ +P+IV LLE D + + L
Sbjct: 186 PGQEIDLNMYLEKGIGKVHSKWSPVSTAVYKFMPKIVYNVDILLEFSADHKLTATEKKNL 245
Query: 293 VKTCPVNVFDIEDIGSGKKRATVAQPRACTLCRECLRCGEEWEKRVSIRRVKDHFICKY 351
K CP+NVF K + P CT CR CL E + K++ I ++ +H IC +
Sbjct: 246 PKICPMNVF-----SYSKGEVNIENPLNCTSCRRCL---ELYPKKIIISKLTNHIICTF 296
>gi|393219179|gb|EJD04666.1| hypothetical protein FOMMEDRAFT_80006 [Fomitiporia mediterranea
MF3/22]
Length = 387
Score = 191 bits (485), Expect = 5e-46, Method: Compositional matrix adjust.
Identities = 124/323 (38%), Positives = 171/323 (52%), Gaps = 50/323 (15%)
Query: 47 IHTENVM------YSGAYASMGVDNSLQLDHFCNNFRVEVIRLTKDDMEFDLIGIDAAIA 100
+H E V + G Y G DNS L F + ++ V RL++ ++ DLIG+DA+IA
Sbjct: 21 VHAERVTNVSSNDFHGHYP--GEDNSWDLSAFKRSLQLNVTRLSQRSVDLDLIGVDASIA 78
Query: 101 NAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRLGLIPIIVDPRLFEYMSENDTSNE 160
NA RR LIAE+PT+AIE V + NNTSVI DEVLAHRLGL+P+ +DP LFE E + +
Sbjct: 79 NAIRRTLIAEVPTIAIESVYVWNNTSVIHDEVLAHRLGLVPLNLDPGLFEMREEGKDATD 138
Query: 161 KNTIVFKLHVLCER--GGPRLT-----------VKTNELKWLPNGSELPLETKPDSNPSS 207
++T+VFKL V C+R G P + V L+W P G + + P
Sbjct: 139 RSTLVFKLEVECKRKAGAPAESANPDDLYENHLVTAGMLRWEPQGEQADV-------PQL 191
Query: 208 KPRTYTSFSSSQDLLPEFSNNPIRPMLDITIARLGPGQEIELEAHAVKGIGKTHAKWSPV 267
KP T NP +I +A+L PGQ I++E HA+K +GK HAKWSPV
Sbjct: 192 KPPGPT--------------NP-----NIVLAKLRPGQVIDMECHAIKNVGKEHAKWSPV 232
Query: 268 ATAWYRMLPEIVLLEDVEDEDAEKLVKTCPVNVFDIEDIGSGKKRATVAQPRAC--TLCR 325
ATA YR+ P I +L+ A K V + G+ + V + R ++ R
Sbjct: 233 ATASYRIHPHITILKQPPSGSARKFADCFSPGVIKVIGEGTASEAVEVDEKRVREESMSR 292
Query: 326 ECLRCGEEWEKRVSIRRVKDHFI 348
E R E+E V + RV+D F+
Sbjct: 293 EVFRHS-EFEGCVKLGRVRDWFL 314
>gi|212530122|ref|XP_002145218.1| DNA-directed RNA polymerase I and III subunit Rpc40, putative
[Talaromyces marneffei ATCC 18224]
gi|210074616|gb|EEA28703.1| DNA-directed RNA polymerase I and III subunit Rpc40, putative
[Talaromyces marneffei ATCC 18224]
Length = 373
Score = 191 bits (485), Expect = 5e-46, Method: Compositional matrix adjust.
Identities = 129/312 (41%), Positives = 172/312 (55%), Gaps = 39/312 (12%)
Query: 62 GVDNSLQLDHFCNNFRVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLI 121
G + ++ F NNFRV+ + D F L+G+DA++ANAFRRILIAE+PT+AIE V I
Sbjct: 38 GESHEWSIEKFQNNFRVDFHKNETYDASFSLVGLDASVANAFRRILIAEVPTLAIEFVYI 97
Query: 122 ANNTSVIQDEVLAHRLGLIPIIVD------PRLFEYMSENDTSNEK----NTIVFKLHVL 171
NNTSVIQDEVLA RLGLIP+ + F+ +E D S+ + NT+V L++
Sbjct: 98 LNNTSVIQDEVLASRLGLIPLKGSIEGLNWMQWFKKATEEDPSSSEPSDFNTVVLNLNIE 157
Query: 172 CERGGPRLTVKTNELKWLPNGSELPLETKPDSNPSSKPRTYTSFSSSQDLLP-EFSNNPI 230
C NE P G E P +++ + T+ + E P+
Sbjct: 158 C---------TVNEKA--PPGEEDPRIRYHNAHVYASDITFDPKGRQEHYFSGEGEIKPV 206
Query: 231 RPMLDITIARLGPGQEIELEAHAVKGIGKTHAKWSPVATAWYRMLPEIVLLEDVEDEDAE 290
P DI IA+L PGQ IELE H +KGIG HAK+SPVATA YR+LPEI ++ + EDA
Sbjct: 207 NP--DILIAKLRPGQVIELEMHCIKGIGADHAKFSPVATATYRLLPEIRIMRPIIGEDAR 264
Query: 291 KLVKTCPVNVFDIEDI--------GS------GKKRATVAQPRACTLCRECLRCGEEWEK 336
K K P V E I GS G+ +A V P T+ RECLR +E++
Sbjct: 265 KFAKCFPKGVIGFEKITPAEAAQKGSGYEGHAGEDKAVVVDPFKDTVSRECLR-HDEFKD 323
Query: 337 RVSIRRVKDHFI 348
+V + RV+DHFI
Sbjct: 324 KVKLGRVRDHFI 335
>gi|67611563|ref|XP_667165.1| DNA-directed RNA polymerase I [Cryptosporidium hominis TU502]
gi|54658273|gb|EAL36936.1| DNA-directed RNA polymerase I [Cryptosporidium hominis]
Length = 344
Score = 191 bits (484), Expect = 5e-46, Method: Compositional matrix adjust.
Identities = 121/328 (36%), Positives = 173/328 (52%), Gaps = 53/328 (16%)
Query: 39 VQCNLDAPIHTENVMYSGAYASMGVDNSLQLDHF--------CNNFRVEVIRLTKDDMEF 90
++C + P NV G S +++ ++ D++ ++V L D + F
Sbjct: 13 LECTTEGP---RNVGGYGYIGSNELNSIIKGDNYRKQTVEEIIETIDIKVNELKSDYINF 69
Query: 91 DLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRLGLIPIIVDPRLFE 150
D+ GIDA+IANA RRIL+ E+PT+AIE V I N VIQDEVLAHRLGLIP+++DP E
Sbjct: 70 DISGIDASIANALRRILLVEIPTVAIETVQIYQNNGVIQDEVLAHRLGLIPMLIDPNTIE 129
Query: 151 YMSENDTSNEKNTIVFKLHVLC-------ERGGPRLTVKTNELKWLPNGSELPLETKPDS 203
+ +E++ NEKN++ FKL+V C E+G + + +L W+P
Sbjct: 130 FRNEDEDLNEKNSVCFKLNVKCTKDDINHEKGITSKAIYSKDLVWIP------------- 176
Query: 204 NPSSKPRTYTSFSSSQDLLPEFSNNPIRPML-DITIARLGPGQEIELEAHAVKGIGKTHA 262
S + +F +P + + DI I +L PGQ IE + K IG+ HA
Sbjct: 177 -------------LSDNQRKKFGKSPPKVVTDDILITKLRPGQSIEAILYCEKNIGRVHA 223
Query: 263 KWSPVATAWYRMLPEIVLLED-VEDEDAEKLVKT-CPVNVFDIEDIGSGKKRATVAQPRA 320
KWSPV TA YR+LPE + DA KL T CP+ VFDIED+ A PR
Sbjct: 224 KWSPVCTASYRLLPEFGFPNGPISGSDALKLRDTVCPMKVFDIEDVTGN---AVPTNPRN 280
Query: 321 CTLCRECLRCGEEWEKRVSIRRVKDHFI 348
CT CR C+ E++ ++ + + K HFI
Sbjct: 281 CTTCRACI---EKFPNKIKLLKDKFHFI 305
>gi|241951478|ref|XP_002418461.1| DNA-directed RNA polymerases I and III subunit, putative [Candida
dubliniensis CD36]
gi|223641800|emb|CAX43762.1| DNA-directed RNA polymerases I and III subunit, putative [Candida
dubliniensis CD36]
Length = 336
Score = 191 bits (484), Expect = 6e-46, Method: Compositional matrix adjust.
Identities = 127/322 (39%), Positives = 174/322 (54%), Gaps = 35/322 (10%)
Query: 32 IEFQRTRVQCNLDAPIHTENVMYSGAYASMGVDNSLQLDHFCNNFRVEVIRLTKDDMEFD 91
IE+ R + D P H +N G YA ++ F NNF +++ L++ FD
Sbjct: 9 IEYNRVTNTTSTDFPGHQQN----GDYA-------WDIEKFKNNFEIKITNLSERTGTFD 57
Query: 92 LIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRLGLIPIIVDPRLFEY 151
LI ID +IANAFRRI+IAE+P++A E V + NTSVIQDEVLA R+GLIP +DP +
Sbjct: 58 LIHIDTSIANAFRRIMIAEVPSVAAETVYMFMNTSVIQDEVLAQRIGLIPWKIDPDKLTW 117
Query: 152 MSE----NDTSNEKNTIVFKLHVLCERGGPRLTVKTNELKWLPNGSELPLETKPDSNPSS 207
+ E ND E NTIV L V C + P S P E +S+ +
Sbjct: 118 VDETVDINDRFTEDNTIVLSLDVACSKN-----------PHAPKNSTDPRELYKNSHVYA 166
Query: 208 KPRTYTSFSSSQDLLPEFSNNPIRPM-LDITIARLGPGQEIELEAHAVKGIGKTHAKWSP 266
K + + ++ +F + P+ P DI +A+L PGQEI L AH V GIG HAK+SP
Sbjct: 167 KDFKFEPHGNQEE---KFKDTPVVPCDPDILLAKLRPGQEISLRAHCVLGIGSDHAKFSP 223
Query: 267 VATAWYRMLPEIVLLEDVEDEDAEKLVKTCPVNVFDIEDIGSGKKRATVAQPRACTLCRE 326
VATA YR+LP I + + + E A+K K P V I+ G +A V R T+ RE
Sbjct: 224 VATASYRLLPVIDIKQPITGELAKKFQKCFPPGVIGIDTNG----KAYVKDARKDTVSRE 279
Query: 327 CLRCGEEWEKRVSIRRVKDHFI 348
LR E++ +V + R +DHFI
Sbjct: 280 VLR-HPEFDGKVQLGRQRDHFI 300
>gi|66356630|ref|XP_625493.1| RNA polymerase III C5 subunit [Cryptosporidium parvum Iowa II]
gi|46226487|gb|EAK87481.1| RNA polymerase III C5 subunit [Cryptosporidium parvum Iowa II]
gi|323509937|dbj|BAJ77861.1| cgd8_300 [Cryptosporidium parvum]
Length = 344
Score = 191 bits (484), Expect = 6e-46, Method: Compositional matrix adjust.
Identities = 121/328 (36%), Positives = 172/328 (52%), Gaps = 53/328 (16%)
Query: 39 VQCNLDAPIHTENVMYSGAYASMGVDNSLQLDHF--------CNNFRVEVIRLTKDDMEF 90
++C + P NV G S +++ ++ D++ ++V L D + F
Sbjct: 13 LECTTEGP---RNVGGYGYIGSNELNSIIKGDNYRKQTVEEIIETIDIKVNELKSDYINF 69
Query: 91 DLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRLGLIPIIVDPRLFE 150
D+ GIDA+IANA RRIL+ E+PT+AIE V I N VIQDEVLAHRLGLIP+++DP E
Sbjct: 70 DISGIDASIANALRRILLVEIPTVAIETVQIYQNNGVIQDEVLAHRLGLIPMLIDPNTIE 129
Query: 151 YMSENDTSNEKNTIVFKLHVLC-------ERGGPRLTVKTNELKWLPNGSELPLETKPDS 203
+ +E++ NEKN++ FKL+V C E+G + + +L W+P
Sbjct: 130 FRNEDEDLNEKNSVCFKLNVKCTKDDINHEKGITSKAIYSKDLVWIP------------- 176
Query: 204 NPSSKPRTYTSFSSSQDLLPEFSNNPIRPMLD-ITIARLGPGQEIELEAHAVKGIGKTHA 262
S + +F P + + D I I +L PGQ IE + K IG+ HA
Sbjct: 177 -------------LSDNQRKKFGKTPPKVVTDDILITKLRPGQSIEAILYCEKNIGRVHA 223
Query: 263 KWSPVATAWYRMLPEIVLLED-VEDEDAEKLVKT-CPVNVFDIEDIGSGKKRATVAQPRA 320
KWSPV TA YR+LPE + DA KL T CP+ VFDIED+ A PR
Sbjct: 224 KWSPVCTASYRLLPEFGFPNGPISGSDALKLRDTVCPMKVFDIEDVTGN---AVPTNPRN 280
Query: 321 CTLCRECLRCGEEWEKRVSIRRVKDHFI 348
CT CR C+ E++ ++ + + K HFI
Sbjct: 281 CTTCRACI---EKFPNKIKLLKDKFHFI 305
>gi|193704512|ref|XP_001945905.1| PREDICTED: DNA-directed RNA polymerases I and III subunit
RPAC1-like [Acyrthosiphon pisum]
Length = 325
Score = 190 bits (483), Expect = 8e-46, Method: Compositional matrix adjust.
Identities = 109/289 (37%), Positives = 160/289 (55%), Gaps = 38/289 (13%)
Query: 70 DHFCNNFRVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQ 129
D F NF++ +I + +D+EFDL+GID A+AN+ RR++I+E+P+MAIEKV I NTS I
Sbjct: 26 DEFVKNFKINIISRSDNDLEFDLVGIDVAVANSLRRVIISEVPSMAIEKVHIYQNTSYIL 85
Query: 130 DEVLAHRLGLIPIIVDPRLFEYM-SENDTSNEKNTIVFKLHVLCERGG---------PRL 179
DE+LAHRLGLIP+ DPR F+ EN NE +++V+++ + C +
Sbjct: 86 DEILAHRLGLIPLKADPRQFKMKEDENSEPNEHDSLVYEMKIKCTKKDLDALAHKQFISF 145
Query: 180 TVKTNELKWLPNGSELPLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPMLDITIA 239
V +KWLP G++ + T+ D S DI IA
Sbjct: 146 PVYAKHIKWLPLGNQKDIFTEKDVGIISD--------------------------DILIA 179
Query: 240 RLGPGQEIELEAHAVKGIGKTHAKWSPVATAWYRMLPEIVLLEDVEDEDAEKLVKTCPVN 299
+L PGQEIEL+ AVKGI K HAK+ V TAWYRM+P I LL++++ DA L P
Sbjct: 180 KLRPGQEIELKMFAVKGIPKDHAKFQSVCTAWYRMMPNIKLLDEIKGNDAVLLQSCFPKG 239
Query: 300 VFDIEDIGSGKKRATVAQPRACTLCRECLRCGEEWEKRVSIRRVKDHFI 348
V ++ + G A V R R R ++++ ++ + +++DHFI
Sbjct: 240 VIGLKSV-KGVLIAFVEDSRKDNSSRNVFRY-KQFDNKILLSKIQDHFI 286
>gi|299750875|ref|XP_001829899.2| RNA polymerase subunit [Coprinopsis cinerea okayama7#130]
gi|298409112|gb|EAU91821.2| RNA polymerase subunit [Coprinopsis cinerea okayama7#130]
Length = 383
Score = 190 bits (483), Expect = 8e-46, Method: Compositional matrix adjust.
Identities = 108/282 (38%), Positives = 164/282 (58%), Gaps = 19/282 (6%)
Query: 75 NFRVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLA 134
N +V++ RL++ +EFDL+G+DA+IANAFRRI+IAE+PT+AIE V + +NTSVI DEVLA
Sbjct: 84 NLKVQITRLSQHTIEFDLVGVDASIANAFRRIMIAEVPTIAIEHVYVWDNTSVIVDEVLA 143
Query: 135 HRLGLIPIIVDPRLFEYMSENDTSNEKNTIVFKLHVLCERGGPRLTVKTNELKWLPNGSE 194
HR+GL+P+ V+P + + S + +++T++FKL V C R P GS
Sbjct: 144 HRIGLVPLNVNPSIMDSRSPQNDPTDRDTLIFKLDVTCTRN-----------PNAPKGST 192
Query: 195 LPLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPMLDITIARLGPGQEIELEAHAV 254
P E + S+ ++ ++ PI P +I + +L PGQ + +E HAV
Sbjct: 193 NPDELYINHEVLSRDLVWSPVGQQAEVFEGCPPAPINP--NIVLTKLRPGQAVNMELHAV 250
Query: 255 KGIGKTHAKWSPVATAWYRMLPEIVLLEDVEDEDAEKLVKTCPVNVFDIEDIGSGKKRAT 314
KG+GK HAK++PVATA YR+LP I + + + E AEK K V ++ K+ +
Sbjct: 251 KGVGKDHAKFTPVATASYRLLPHIKIKKPIPPEHAEKFAKCFSPGVIKVD---PQTKQVS 307
Query: 315 VAQP--RACTLCRECLRCGEEWEKRVSIRRVKDHFICKYVML 354
V + R T+ RE R E+ V + RV+D+F+C +
Sbjct: 308 VDEHNVRKDTVTREVFR-HPEFADSVELSRVRDYFLCAFAFF 348
>gi|302693813|ref|XP_003036585.1| hypothetical protein SCHCODRAFT_45907 [Schizophyllum commune H4-8]
gi|300110282|gb|EFJ01683.1| hypothetical protein SCHCODRAFT_45907 [Schizophyllum commune H4-8]
Length = 354
Score = 190 bits (482), Expect = 9e-46, Method: Compositional matrix adjust.
Identities = 124/331 (37%), Positives = 175/331 (52%), Gaps = 53/331 (16%)
Query: 35 QRTRVQCNLDAPIHTENVMYSGAYASMGVDNSLQLDHFCNNFRVEVIRLTKDDMEFDLIG 94
QR V + + + Y G + G D+S L+ F N +V+V RL+ +EFDL+G
Sbjct: 5 QRRLVGITAERVTNVSSTDYPGHH--YGEDHSWNLEEFKRNLKVKVQRLSNRSIEFDLVG 62
Query: 95 IDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRLGLIPIIVDPRLFEYMSE 154
+DA+IANAFRRI+IAE+PT+AIE V + +NTSVI DEVLAHRLGL+P+ VDP +
Sbjct: 63 VDASIANAFRRIMIAEVPTIAIENVYVWDNTSVIVDEVLAHRLGLVPLNVDPD--QMQPR 120
Query: 155 NDTSNEKNTIVFKLHVLCERGGPRLT-------------VKTNELKWLPNGSELPLETKP 201
D +++TI+F L V C R V ++ LKW P G + +
Sbjct: 121 KDIPTDRDTIIFDLAVACTRKSHSSANATEPEDLYDNHEVLSSHLKWRPVGEQEEV---- 176
Query: 202 DSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPM-LDITIARLGPGQEIELEAHAVKGIGKT 260
F+N P P +I +A+L PGQ + +E HAVKG+GK
Sbjct: 177 -----------------------FANKPPAPTNPNIVLAKLRPGQAVHMELHAVKGVGKD 213
Query: 261 HAKWSPVATAWYRMLPEIVLLEDVEDEDAEKLVKTCPVNVFDIEDIGSGKKRATVAQP-- 318
HAK+SPVATA YR+LP I + + + E A+K K V ++ +A P
Sbjct: 214 HAKFSPVATASYRLLPHIKIKKPIPPELADKFQKCFSPGVIRVD----PNTKAVSVDPKN 269
Query: 319 -RACTLCRECLRCGEEWEKRVSIRRVKDHFI 348
R T+ RE LR E++ V + RV+DHF+
Sbjct: 270 VRRDTVSREVLR-HPEFQDSVELSRVRDHFL 299
>gi|169603299|ref|XP_001795071.1| hypothetical protein SNOG_04658 [Phaeosphaeria nodorum SN15]
gi|160706369|gb|EAT88418.2| hypothetical protein SNOG_04658 [Phaeosphaeria nodorum SN15]
Length = 350
Score = 190 bits (482), Expect = 9e-46, Method: Compositional matrix adjust.
Identities = 123/313 (39%), Positives = 172/313 (54%), Gaps = 48/313 (15%)
Query: 69 LDHFCNNFRVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVI 128
LD+F +NF+V+ + D F L GID ++ANAFRRIL+AE+PT+AIE V I NTS+I
Sbjct: 19 LDYFKDNFKVKFHTHSPHDTSFSLTGIDTSVANAFRRILLAEIPTLAIEDVFIYQNTSII 78
Query: 129 QDEVLAHRLGLIPIIVDPR----LFEYMSEND------TSNEKNTIVFKLHVLC--ERGG 176
QDEVLAHRLGLIP+ + L Y E D T ++ NT++ KL V C + GG
Sbjct: 79 QDEVLAHRLGLIPLCGSHKGLRWLKWYKKETDDDEGSGTPSDYNTVIMKLDVECSWQEGG 138
Query: 177 PRLTVKTNELKWLPNGSELPLETKPDS-----NPSSKPRTYTSFSSSQDLLPEFSNNPIR 231
+ V+ ET PD N +K + D P S IR
Sbjct: 139 LQRAVQG--------------ETDPDKLYIGHNVYAKDLVWEPLGKQFDEFP--SGEEIR 182
Query: 232 PML-DITIARLGPGQEIELEAHAVKGIGKTHAKWSPVATAWYRMLPEIVLLEDVEDEDAE 290
DI I ++ PGQ+I+L HA+KGIG+ HAK+SPVATA YR++P I +L+ + DA+
Sbjct: 183 ATNPDILIVKMRPGQKIQLSMHAIKGIGQDHAKFSPVATASYRLMPTIDILKPIVGADAK 242
Query: 291 KLVKTCPVNVFDIEDIGS-------------GKKRATVAQPRACTLCRECLRCGEEWEKR 337
K + P V +E + S G+ +A V P T+ RECLR E++ +
Sbjct: 243 KFARCFPRGVIKLETVTSEDVEKNTELAGQEGESKAVVDDPMKDTVSRECLR-HPEFKDK 301
Query: 338 VSIRRVKDHFICK 350
V++ R++DHFI +
Sbjct: 302 VNLGRIRDHFIFR 314
>gi|448510710|ref|XP_003866410.1| Rpc40 RNA polymerase [Candida orthopsilosis Co 90-125]
gi|380350748|emb|CCG20970.1| Rpc40 RNA polymerase [Candida orthopsilosis Co 90-125]
Length = 336
Score = 190 bits (482), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 127/324 (39%), Positives = 174/324 (53%), Gaps = 35/324 (10%)
Query: 32 IEFQRTRVQCNLDAPIHTENVMYSGAYASMGVDNSLQLDHFCNNFRVEVIRLTKDDMEFD 91
IE+ R + D P H SG Y S ++ F +F +++ +++ FD
Sbjct: 9 IEYNRVTNTSSTDFPGHQS----SGDY-------SWDIEKFKQSFDIKITNVSERVANFD 57
Query: 92 LIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRLGLIPIIVDPRLFEY 151
L+ ID +IANAFRRI+IAE+P++A+E V NTSVIQDEVLAHR+GLIP+ VDP +
Sbjct: 58 LVHIDTSIANAFRRIMIAEVPSVAVETVYSFMNTSVIQDEVLAHRIGLIPLKVDPDSLTW 117
Query: 152 ----MSENDTSNEKNTIVFKLHVLCERGGPRLTVKTNELKWLPNGSELPLETKPDSNPSS 207
+ END E NTIV L V C + P S P E +SN +
Sbjct: 118 VDKTVDENDRYTEDNTIVLSLDVTCTKN-----------PHAPKNSTNPSELYRNSNVYA 166
Query: 208 KPRTYTSFSSSQDLLPEFSNNPIRPM-LDITIARLGPGQEIELEAHAVKGIGKTHAKWSP 266
K F L ++ +NP+ P +I +A+L PGQEI L AH + GIG HAK+SP
Sbjct: 167 KD---LKFEPQGSQLEKYKDNPVVPTDPNILLAKLRPGQEISLRAHCILGIGADHAKFSP 223
Query: 267 VATAWYRMLPEIVLLEDVEDEDAEKLVKTCPVNVFDIEDIGSGKKRATVAQPRACTLCRE 326
VATA YR+LP I + E + E A+K K P V +I+ G A VA R T+ RE
Sbjct: 224 VATASYRLLPVIDIKEPITGELAKKFQKCFPSGVIEIDPKG----EAYVADARKDTVSRE 279
Query: 327 CLRCGEEWEKRVSIRRVKDHFICK 350
LR E+ +V + R +D+FI +
Sbjct: 280 VLR-HPEFNGKVKLGRQRDYFIFQ 302
>gi|225717016|gb|ACO14354.1| DNA-directed RNA polymerases I and III subunit RPAC1 [Esox lucius]
Length = 239
Score = 189 bits (481), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 108/240 (45%), Positives = 143/240 (59%), Gaps = 42/240 (17%)
Query: 47 IHTENVMYSGAYASMGVDNSLQLDHFCNNFRVEVIRLTKDDMEFDLIGIDAAIANAFRRI 106
+HT + Y G Y G D++ L F NFR++V+++ + MEFD++GIDA+IANAFRRI
Sbjct: 25 VHTTD--YPGNYP--GYDDTWSLQKFQKNFRIDVVQMDETCMEFDMVGIDASIANAFRRI 80
Query: 107 LIAELPTMAIEKVLIANNTSVIQDEVLAHRLGLIPIIVDPRLFEYMSEND-TSNEKNTIV 165
L+AE+PTMA+EKV I NNTS+IQDEVLA RLGLIPI DPRLFEY + D E +TI
Sbjct: 81 LLAEVPTMAVEKVFIYNNTSIIQDEVLAQRLGLIPIKADPRLFEYRNAGDEEGTEIDTIQ 140
Query: 166 FKLHVLCERGGPRLTVKTNELKWLPNGSELPLETKPDSNPSSKPRTYTSFSSSQDLLPEF 225
+L + C R TK ++P + +S
Sbjct: 141 LQLKIKCTRNHQ--------------------ATKDSADPQELYLNHMVYSK-------- 172
Query: 226 SNNPIRPMLDITIARLGPGQEIELEAHAVKGIGKTHAKWSPVATAWYRMLPEIVLLEDVE 285
DI +A+L PGQE+++ H VKGIG+ HAK+SPVATA YR+LPEI L++ VE
Sbjct: 173 ---------DILLAKLRPGQELDIVMHCVKGIGQDHAKFSPVATASYRLLPEITLMKPVE 223
>gi|367015666|ref|XP_003682332.1| hypothetical protein TDEL_0F03100 [Torulaspora delbrueckii]
gi|359749994|emb|CCE93121.1| hypothetical protein TDEL_0F03100 [Torulaspora delbrueckii]
Length = 335
Score = 189 bits (480), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 121/310 (39%), Positives = 169/310 (54%), Gaps = 50/310 (16%)
Query: 57 AYASMGVDNSLQLDHFCNNFRVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAI 116
Y+ G DN ++ F N F V++ LT+ + FDLI ID +IANAFRRI+I+E+P++A
Sbjct: 22 GYSKEG-DNEWDVEKFKNTFDVQIESLTEREANFDLIHIDTSIANAFRRIMISEVPSLAP 80
Query: 117 EKVLIANNTSVIQDEVLAHRLGLIPIIVDPRLFEY----MSENDTSNEKNTIVFKLHVLC 172
E V NNTSVIQDEVLAHR+GL+P+ VDP + + + E + ++NTIV L+V C
Sbjct: 81 EHVYFLNNTSVIQDEVLAHRIGLVPLKVDPDMLTWVDSTLPEEERFTDENTIVLTLNVTC 140
Query: 173 ERG--------GPRL-----TVKTNELKWLPNGSELPLETKPDSNPSSKPRTYTSFSSSQ 219
R P++ +V ++LK+ P G + L
Sbjct: 141 TRNPDAPKDCTDPKILYRNSSVYAHDLKFEPQGRQAEL---------------------- 178
Query: 220 DLLPEFSNNPIRPM-LDITIARLGPGQEIELEAHAVKGIGKTHAKWSPVATAWYRMLPEI 278
F+ P+ P DI +A+L PGQEI L AH + G+G HAK+SPVATA YR+LP I
Sbjct: 179 -----FAKCPVVPADPDILLAKLRPGQEISLRAHCILGVGGDHAKFSPVATASYRLLPHI 233
Query: 279 VLLEDVEDEDAEKLVKTCPVNVFDIEDIGSGKKRATVAQPRACTLCRECLRCGEEWEKRV 338
+ + + E A+K K V DI++ A V R T+ RE LR EE+ V
Sbjct: 234 NITKPITGESAKKFQKCFSPGVIDIDE---STGEAVVKDARRDTVSREVLR-HEEFADSV 289
Query: 339 SIRRVKDHFI 348
+ RV+DHFI
Sbjct: 290 KLGRVRDHFI 299
>gi|170033286|ref|XP_001844509.1| DNA-directed RNA polymerase I 40 kDa polypeptide [Culex
quinquefasciatus]
gi|167873916|gb|EDS37299.1| DNA-directed RNA polymerase I 40 kDa polypeptide [Culex
quinquefasciatus]
Length = 335
Score = 189 bits (480), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 114/299 (38%), Positives = 164/299 (54%), Gaps = 45/299 (15%)
Query: 64 DNSLQLDHFCNNFRVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIAN 123
D+ + F ++ V+R ++++EFD+IG+ AIANAFRR++++E+P+MAIEKV I N
Sbjct: 32 DDFWDFERFKRQLQIVVVRYEENELEFDMIGVSPAIANAFRRLMLSEVPSMAIEKVHIYN 91
Query: 124 NTSVIQDEVLAHRLGLIPIIVDPRLFEYMS-ENDTSNEKNTIVFKLHVLCERGGPRLTVK 182
NTS+IQDEVLAHRLGLIP+ DPRLFEY + E D +N ++T+ F+L V C + T
Sbjct: 92 NTSIIQDEVLAHRLGLIPLKADPRLFEYKTNEGDAANAQDTLEFELKVKCTKKNKDSTEV 151
Query: 183 TN-------------ELKWLPNGSELPLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNP 229
TN ++KW+P G++ + + D P
Sbjct: 152 TNNDSMYKNHSIYSGQIKWVPVGNQASIYKEADVGPIDD--------------------- 190
Query: 230 IRPMLDITIARLGPGQEIELEAHAVKGIGKTHAKWSPVATAWYRMLPEIVLLEDVEDEDA 289
DI I+R+ PG E +++ AVKG+GK HAK+SPVATA YR+LPEI L V A
Sbjct: 191 -----DILISRMRPGHEFDIKLFAVKGVGKDHAKFSPVATASYRLLPEIHLKRPVVGNQA 245
Query: 290 EKLVKTCPVNVFDIEDIGSGKKRATVAQPRACTLCRECLRCGEEWEKRVSIRRVKDHFI 348
L K V +I+ +A V R + R R + V++ RV++HFI
Sbjct: 246 LLLQKCFSPGVIEID----KDDQAYVKDARYDSCSRNVYRY-PQLADSVTMSRVRNHFI 299
>gi|255933139|ref|XP_002558040.1| Pc12g12250 [Penicillium chrysogenum Wisconsin 54-1255]
gi|211582659|emb|CAP80852.1| Pc12g12250 [Penicillium chrysogenum Wisconsin 54-1255]
Length = 374
Score = 189 bits (479), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 131/348 (37%), Positives = 185/348 (53%), Gaps = 43/348 (12%)
Query: 28 LPPHIEFQRTRV-QCNLDAPIHTENVMYSGAYASMGVDNSLQLDHFCNNFRVEVIRLTKD 86
+P E QR R+ N + + + + G + G + LD F N F+VE R +
Sbjct: 5 VPSQEELQRRRIIGINAETVTNIPSTDFPGHWP--GESHGWALDEFKNKFQVEFHRNERF 62
Query: 87 DMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRLGLIPI---- 142
+ F LIG+DAA+ANAFRRIL+AE+PT+AIE I NNTSVIQDEVLA RLGLIP+
Sbjct: 63 EASFSLIGLDAAVANAFRRILMAEIPTIAIEDCFIHNNTSVIQDEVLASRLGLIPLKGSI 122
Query: 143 --IVDPRLFEYMSENDTSNEK-----NTIVFKLHVLCERGGPRLTVKTNELKWLPNGSEL 195
I F+ SE+ + E NTIV L V C + ++ +
Sbjct: 123 EGINWMHWFKKASEDGSEEEDGPCDFNTIVLHLDVECYKN-----------EYADKDEQD 171
Query: 196 PLETKPDSNPSSKPRTYTSFS-SSQDLLPEFSNNPIRPMLDITIARLGPGQEIELEAHAV 254
P + +++ +K Y Q + + + P+ P DI IA+L PGQ+IE+E H
Sbjct: 172 PRKLYTNAHVYAKDLMYMPVGRQEQYFVGDGAIAPVNP--DILIAKLRPGQKIEMELHCQ 229
Query: 255 KGIGKTHAKWSPVATAWYRMLPEIVLLEDVEDEDAEKLVKTCPVNVFDIEDIGS------ 308
KGIG HAK+SPVATA YR+LP+I + + +DA+K K P V +E + S
Sbjct: 230 KGIGADHAKFSPVATASYRLLPDIKIERPIIGDDAKKFAKCFPKGVIGLEPVTSEEAAQP 289
Query: 309 --------GKKRATVAQPRACTLCRECLRCGEEWEKRVSIRRVKDHFI 348
G+++A V T+ RECLR EE++ +V + RV+DHFI
Sbjct: 290 GSGYEGHAGEQKAVVKDAFNDTVSRECLR-HEEFQGKVKLGRVRDHFI 336
>gi|238882305|gb|EEQ45943.1| DNA-directed RNA polymerases I and III 40 kDa polypeptide [Candida
albicans WO-1]
Length = 336
Score = 189 bits (479), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 127/322 (39%), Positives = 173/322 (53%), Gaps = 35/322 (10%)
Query: 32 IEFQRTRVQCNLDAPIHTENVMYSGAYASMGVDNSLQLDHFCNNFRVEVIRLTKDDMEFD 91
IE+ R + D P H +N G YA ++ F N F +++ L++ FD
Sbjct: 9 IEYNRVTNTTSTDFPGHQQN----GDYA-------WDIEKFKNKFEIKITNLSERTGTFD 57
Query: 92 LIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRLGLIPIIVDPRLFEY 151
LI ID +IANAFRRI+IAE+P++A E V + NTSVIQDEVLA R+GLIP +DP +
Sbjct: 58 LIHIDTSIANAFRRIMIAEVPSVAAETVYMFMNTSVIQDEVLAQRIGLIPWKIDPDKLTW 117
Query: 152 MSE----NDTSNEKNTIVFKLHVLCERGGPRLTVKTNELKWLPNGSELPLETKPDSNPSS 207
+ E ND E NTIV L V C + P S P E +S+ +
Sbjct: 118 VDETVDINDRFTEDNTIVLSLDVACSKN-----------PHAPKNSTDPRELYKNSHVYA 166
Query: 208 KPRTYTSFSSSQDLLPEFSNNPIRPM-LDITIARLGPGQEIELEAHAVKGIGKTHAKWSP 266
K + + ++ +F + P+ P DI +A+L PGQEI L AH V GIG HAK+SP
Sbjct: 167 KDFKFEPHGNQEE---KFKDTPVVPCDPDILLAKLRPGQEISLRAHCVLGIGSDHAKFSP 223
Query: 267 VATAWYRMLPEIVLLEDVEDEDAEKLVKTCPVNVFDIEDIGSGKKRATVAQPRACTLCRE 326
VATA YR+LP I + E + E A+K K P V I+ G +A V R T+ RE
Sbjct: 224 VATASYRLLPVIDIKEPITGELAKKFQKCFPPGVIGIDANG----KAYVKDARKDTVSRE 279
Query: 327 CLRCGEEWEKRVSIRRVKDHFI 348
LR E++ +V + R +DHFI
Sbjct: 280 VLR-HPEFDGKVQLGRQRDHFI 300
>gi|68482204|ref|XP_714986.1| hypothetical protein CaO19.11048 [Candida albicans SC5314]
gi|68482331|ref|XP_714923.1| hypothetical protein CaO19.3564 [Candida albicans SC5314]
gi|46436522|gb|EAK95883.1| hypothetical protein CaO19.3564 [Candida albicans SC5314]
gi|46436587|gb|EAK95947.1| hypothetical protein CaO19.11048 [Candida albicans SC5314]
Length = 369
Score = 189 bits (479), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 126/322 (39%), Positives = 172/322 (53%), Gaps = 35/322 (10%)
Query: 32 IEFQRTRVQCNLDAPIHTENVMYSGAYASMGVDNSLQLDHFCNNFRVEVIRLTKDDMEFD 91
IE+ R + D P H +N YS ++ F N F +++ L++ FD
Sbjct: 42 IEYNRVTNTTSTDFPGHQQNGDYS-----------WDIEKFKNKFEIKITNLSERTGTFD 90
Query: 92 LIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRLGLIPIIVDPRLFEY 151
LI ID +IANAFRRI+IAE+P++A E V + NTSVIQDEVLA R+GLIP +DP +
Sbjct: 91 LIHIDTSIANAFRRIMIAEVPSVAAETVYMFMNTSVIQDEVLAQRIGLIPWKIDPDKLTW 150
Query: 152 MSE----NDTSNEKNTIVFKLHVLCERGGPRLTVKTNELKWLPNGSELPLETKPDSNPSS 207
+ E ND E NTIV L V C + P S P E +S+ +
Sbjct: 151 VDETVDINDRFTEDNTIVLSLDVACSKN-----------PHAPKNSTDPRELYKNSHVYA 199
Query: 208 KPRTYTSFSSSQDLLPEFSNNPIRPM-LDITIARLGPGQEIELEAHAVKGIGKTHAKWSP 266
K + + ++ +F + P+ P DI +A+L PGQEI L AH V GIG HAK+SP
Sbjct: 200 KDFKFEPHGNQEE---KFKDTPVVPCDPDILLAKLRPGQEISLRAHCVLGIGSDHAKFSP 256
Query: 267 VATAWYRMLPEIVLLEDVEDEDAEKLVKTCPVNVFDIEDIGSGKKRATVAQPRACTLCRE 326
VATA YR+LP I + E + E A+K K P V I+ G +A V R T+ RE
Sbjct: 257 VATASYRLLPVIDIKEPITGELAKKFQKCFPPGVIGIDANG----KAYVKDARKDTVSRE 312
Query: 327 CLRCGEEWEKRVSIRRVKDHFI 348
LR E++ +V + R +DHFI
Sbjct: 313 VLR-HPEFDGKVQLGRQRDHFI 333
>gi|366988647|ref|XP_003674091.1| hypothetical protein NCAS_0A11520 [Naumovozyma castellii CBS 4309]
gi|342299954|emb|CCC67710.1| hypothetical protein NCAS_0A11520 [Naumovozyma castellii CBS 4309]
Length = 335
Score = 189 bits (479), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 119/295 (40%), Positives = 166/295 (56%), Gaps = 35/295 (11%)
Query: 65 NSLQLDHFCNNFRVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANN 124
N+ ++ F N F+VE+ L + + FDLI ID +IANAFRRI+I+E+P +A E V NN
Sbjct: 29 NAWDVEKFRNTFKVEISSLNEREANFDLINIDTSIANAFRRIMISEVPAVAAEYVYFLNN 88
Query: 125 TSVIQDEVLAHRLGLIPIIVDPRLFEY----MSENDTSNEKNTIVFKLHVLCERGGPRLT 180
TSVIQDEVLAHR+GLIP+ VDP L + + + + N+ NTIV L+V C R
Sbjct: 89 TSVIQDEVLAHRIGLIPLKVDPDLLTWVDNELPDEEKFNDTNTIVLTLNVKCTRN----- 143
Query: 181 VKTNELKWLPNGSELPLETKPDSNPSSKPRTYTSFSSSQDLLPE------FSNNPIRPM- 233
P K ++P R + ++S P+ F+ P+ P
Sbjct: 144 ---------------PDAPKDATDPKILYRNSSVYASDLKFEPQGKQIETFAGTPVVPCD 188
Query: 234 LDITIARLGPGQEIELEAHAVKGIGKTHAKWSPVATAWYRMLPEIVLLEDVEDEDAEKLV 293
DI +A+L PGQEI L AH + G G HAK+SPV+TA YR+LP I + + ++ E AEK
Sbjct: 189 QDILLAKLRPGQEISLRAHCILGTGGDHAKFSPVSTASYRLLPHINITKPIKGELAEKFQ 248
Query: 294 KTCPVNVFDIEDIGSGKKRATVAQPRACTLCRECLRCGEEWEKRVSIRRVKDHFI 348
K V I++ SG+ A V R T+ RE LR EE+ +V + R++DHFI
Sbjct: 249 KCFLPGVIGIDN-ASGE--AFVKDARKDTVSREVLR-HEEFNDKVKLGRIRDHFI 299
>gi|328785531|ref|XP_625072.3| PREDICTED: DNA-directed RNA polymerases I and III subunit
RPAC1-like [Apis mellifera]
Length = 510
Score = 189 bits (479), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 116/318 (36%), Positives = 176/318 (55%), Gaps = 47/318 (14%)
Query: 55 SGAYASMGVDNSLQLDHFCNNFRVEVIRLTKD--DMEFDLIGIDAAIANAFRRILIAELP 112
+ Y L +F F+++V+R ++D ++EFDLIG ANAFRR+L++E+P
Sbjct: 19 ASEYTHYQSQQDWNLSNFKKEFKIQVMRESEDTRELEFDLIGYPVGFANAFRRVLLSEVP 78
Query: 113 TMAIEKVLIANNTSVIQDEVLAHRLGLIPIIVDPRLFEYMS----ENDTSNEKNTIVFKL 168
TMAIEKV I NNTS+IQDEVLAHRLGLIP+ DPRLFEY S + D ++++T+ ++L
Sbjct: 79 TMAIEKVYIVNNTSLIQDEVLAHRLGLIPLRADPRLFEYPSSTAKDQDEVSDQDTLRYEL 138
Query: 169 HVLC--ERGGPRLTVKTNEL-----------KWLPNGSELPLETKPDSNPSSKPRTYTSF 215
+ C P+ + +TN++ KW+P G + L PR
Sbjct: 139 KISCTWNSQAPKDSRRTNDMYRNSNVYSRDIKWVPIGHQAEL----------YPRGTEQL 188
Query: 216 SSSQDLLPEFSNNPIRPMLDITIARLGPGQEIELEAHAVKGIGKTHAKWSPVATAWYRML 275
S ++ DI I ++ PGQEI HAVKGIGK HAK+SPVATA YR+L
Sbjct: 189 SVLEN--------------DILICKMRPGQEIHAFMHAVKGIGKDHAKFSPVATASYRLL 234
Query: 276 PEIVLLEDVEDEDAEKLVKTCPVNVFDIEDIGSG---KKRATVAQPRACTLCRECLRCGE 332
P+I +++ V+ E A++L + V ++ + G + A V PR + R + E
Sbjct: 235 PDIQIIKPVKGEMADRLKNCFSIGVIEVIENKPGDPDSREARVKNPRYDSCSRNVFQ-HE 293
Query: 333 EWEKRVSIRRVKDHFICK 350
+ + + + R+++H I +
Sbjct: 294 DLKGCIRLNRIRNHIISQ 311
>gi|121716353|ref|XP_001275782.1| DNA-directed RNA polymerase I and III subunit Rpc40, putative
[Aspergillus clavatus NRRL 1]
gi|119403939|gb|EAW14356.1| DNA-directed RNA polymerase I and III subunit Rpc40, putative
[Aspergillus clavatus NRRL 1]
Length = 374
Score = 189 bits (479), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 127/343 (37%), Positives = 186/343 (54%), Gaps = 33/343 (9%)
Query: 28 LPPHIEFQRTR-VQCNLDAPIHTENVMYSGAYASMGVDNSLQLDHFCNNFRVEVIRLTKD 86
+P E +R R V N + + + + G + G + L+ F + FRVE R
Sbjct: 5 IPSQEELERRRIVGINAETVTNIPSTDFPGHWP--GESHEWNLEKFKDGFRVEFHRNDPF 62
Query: 87 DMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRLGLIPIIVDP 146
+ F LIG+D +IANAFRRIL+AE+PT+AIE V + NNTSVIQDEVLA RLGLIP+
Sbjct: 63 ESSFSLIGVDPSIANAFRRILMAEVPTLAIEYVFVHNNTSVIQDEVLASRLGLIPLKGSV 122
Query: 147 ------RLFEYMSENDTSNEKNTIVFKLHVLCERGGPRLTVKTNELKWLPNGSELPLETK 200
R F+ +E D + N + VL RL V+ E G + P +
Sbjct: 123 EGLNWMRWFKKPTEEDPDSGSNPADYNTIVL------RLDVECAENPNAAPGEDDPRKLY 176
Query: 201 PDSNPSSKPRTYTSFSSSQDLLP-EFSNNPIRPMLDITIARLGPGQEIELEAHAVKGIGK 259
+++ +K TY + + + P+ P DI +A+L PGQ+I++E H +KGIG
Sbjct: 177 KNAHVYAKDITYHPVGRQEQFFTGDGAIQPVNP--DILVAKLRPGQKIDMELHCIKGIGA 234
Query: 260 THAKWSPVATAWYRMLPEIVLLEDVEDEDAEKLVKTCPVNVFDIEDIGS----------- 308
HAK+SPVATA YR++P+I +L + +DA+K K P V ++E + S
Sbjct: 235 DHAKFSPVATASYRLMPDIKILRPIIGDDAKKFAKCFPKGVIELEPVTSTEAAQKGSEYE 294
Query: 309 ---GKKRATVAQPRACTLCRECLRCGEEWEKRVSIRRVKDHFI 348
G+ +A V P T+ RECLR EE++ +V + R++DHFI
Sbjct: 295 GHAGELKAVVRDPFNDTVSRECLRH-EEFQGKVKLGRIRDHFI 336
>gi|255716882|ref|XP_002554722.1| KLTH0F12056p [Lachancea thermotolerans]
gi|238936105|emb|CAR24285.1| KLTH0F12056p [Lachancea thermotolerans CBS 6340]
Length = 350
Score = 189 bits (479), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 118/296 (39%), Positives = 161/296 (54%), Gaps = 36/296 (12%)
Query: 64 DNSLQLDHFCNNFRVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIAN 123
D + L+ F N F V + L + FDL+ +DA+IANAFRRI+IAE+P++A E V N
Sbjct: 44 DAAWNLERFKNTFDVNITSLDDREANFDLVNVDASIANAFRRIMIAEVPSVAAEYVYFFN 103
Query: 124 NTSVIQDEVLAHRLGLIPIIVDPRLFEYMS----ENDTSNEKNTIVFKLHVLCERGGPRL 179
NTSVIQDEVLAHR+GL P+ VDP + ++ E + ++NTIV L+V C R
Sbjct: 104 NTSVIQDEVLAHRIGLTPLKVDPDMLSWVDTSVPEAERFTDENTIVLTLNVRCTRN---- 159
Query: 180 TVKTNELKWLPNGSELPLETKPDSNPSSKPRTYTSFSSSQDLLPE------FSNNPIRPM 233
P K ++P R ++ P+ F+ NP+ P
Sbjct: 160 ----------------PDAPKDCTDPKILYRNAHIYARDLKFEPQGKQRETFAKNPVVPA 203
Query: 234 -LDITIARLGPGQEIELEAHAVKGIGKTHAKWSPVATAWYRMLPEIVLLEDVEDEDAEKL 292
DI +A+L PGQEI L AH V GIG HAK+SPV+TA YR++P I + + + E A++
Sbjct: 204 DPDILLAKLRPGQEISLRAHCVLGIGSDHAKFSPVSTASYRLMPHINITQPITGESAQRF 263
Query: 293 VKTCPVNVFDIEDIGSGKKRATVAQPRACTLCRECLRCGEEWEKRVSIRRVKDHFI 348
K V I D G A V R T+ RE LR EE+E +V + RVK+HFI
Sbjct: 264 AKCFSPGVIGINDNGE----AFVKDARHDTVSREVLR-HEEFEGKVKLGRVKNHFI 314
>gi|410075079|ref|XP_003955122.1| hypothetical protein KAFR_0A05520 [Kazachstania africana CBS 2517]
gi|372461704|emb|CCF55987.1| hypothetical protein KAFR_0A05520 [Kazachstania africana CBS 2517]
Length = 334
Score = 188 bits (478), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 124/326 (38%), Positives = 176/326 (53%), Gaps = 43/326 (13%)
Query: 32 IEFQRTRVQCNLDAPIHTENVMYSGAYASMGVDNSLQLDHFCNNFRVEVIRLTKDDMEFD 91
IE+ R + D P ++S G DN+ ++ F +F V++ + + + FD
Sbjct: 7 IEYNRVTNTTSNDFP----------GFSSSG-DNAWDVEKFRESFDVKISSMNEREANFD 55
Query: 92 LIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRLGLIPIIVDPRLFEY 151
L+ ID ++ANAFRRI+I+E+P +A+E V NNTSVIQDEVLAHR+GL+P+ VDP + +
Sbjct: 56 LVHIDTSVANAFRRIMISEVPAVAVEYVYFLNNTSVIQDEVLAHRIGLVPLKVDPDMLTW 115
Query: 152 MSENDTSNEK----NTIVFKLHVLCERG--GPRLTVKTNELKWLPN--GSELPLETKPDS 203
+ + +EK NTIV L+V C R PR N L N S+L E
Sbjct: 116 IDSSLPDDEKFTDENTIVLTLNVKCTRNPDAPRDCTDPNILYRNSNVYASDLKFE----- 170
Query: 204 NPSSKPRTYTSFSSSQDLLPEFSNNPIRPM-LDITIARLGPGQEIELEAHAVKGIGKTHA 262
P K + F+NN + P I +A+L PGQEI L AH + GIG HA
Sbjct: 171 -PQGKQ------------VETFANNAVVPCDPKILLAKLRPGQEISLRAHCILGIGSDHA 217
Query: 263 KWSPVATAWYRMLPEIVLLEDVEDEDAEKLVKTCPVNVFDIEDIGSGKKRATVAQPRACT 322
K+SPVATA YR+LP I + E + E A++ K P V I++ G A V R T
Sbjct: 218 KFSPVATASYRLLPHIEITEPITGESAKRFQKCFPAGVIGIKENGD----AYVQDSRKDT 273
Query: 323 LCRECLRCGEEWEKRVSIRRVKDHFI 348
+ RE R EE+ +V + R++DHF+
Sbjct: 274 VSREVYR-HEEFNGKVKLGRIRDHFV 298
>gi|367001448|ref|XP_003685459.1| hypothetical protein TPHA_0D03920 [Tetrapisispora phaffii CBS 4417]
gi|357523757|emb|CCE63025.1| hypothetical protein TPHA_0D03920 [Tetrapisispora phaffii CBS 4417]
Length = 335
Score = 188 bits (477), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 122/319 (38%), Positives = 168/319 (52%), Gaps = 52/319 (16%)
Query: 48 HTENVMYSGAYASMGVDNSLQLDHFCNNFRVEVIRLTKDDMEFDLIGIDAAIANAFRRIL 107
+T + + G Y S G++ ++ F +F + + LT+ + FDL+ ID +IANAFRRI+
Sbjct: 14 NTTSTDFPGNYQSEGLE--WDVEKFRESFDIHISSLTEKEANFDLVHIDTSIANAFRRIM 71
Query: 108 IAELPTMAIEKVLIANNTSVIQDEVLAHRLGLIPIIVDPRLFEYMSENDTSNEK----NT 163
IAE+P++A E V NNTSVIQDEVLAHR+GLIP+ VDP ++ EK NT
Sbjct: 72 IAEVPSVAAEYVYFMNNTSVIQDEVLAHRIGLIPLRVDPDKLSWIDSELPDEEKFTDENT 131
Query: 164 IVFKLHVLCERG--------GPRLT-----VKTNELKWLPNGSELPLETKPDSNPSSKPR 210
IV L C R P++ V +LK+ P G + L
Sbjct: 132 IVITLDAKCTRNPDAPKDATDPKVLYRNAHVYARDLKFEPQGKQAEL------------- 178
Query: 211 TYTSFSSSQDLLPEFSNNPIRPM-LDITIARLGPGQEIELEAHAVKGIGKTHAKWSPVAT 269
F++ P+ + DI IA+L PGQEI L AH + GIG HAK+SPVAT
Sbjct: 179 --------------FADQPVEAIDPDILIAKLRPGQEISLRAHCILGIGGDHAKFSPVAT 224
Query: 270 AWYRMLPEIVLLEDVEDEDAEKLVKTCPVNVFDIEDIGSGKKRATVAQPRACTLCRECLR 329
A YR+LP I + + E A++ K P V I D K A V R T+ RE LR
Sbjct: 225 ASYRLLPHINITSPISGESAKRFQKCFPSGVIGIND----KDEAFVKDARKDTVSREVLR 280
Query: 330 CGEEWEKRVSIRRVKDHFI 348
EE++ +V + RV+DHF+
Sbjct: 281 -HEEFQNKVKLGRVRDHFV 298
>gi|261196646|ref|XP_002624726.1| DNA-directed RNA polymerase I and III polypeptide [Ajellomyces
dermatitidis SLH14081]
gi|239595971|gb|EEQ78552.1| DNA-directed RNA polymerase I and III polypeptide [Ajellomyces
dermatitidis SLH14081]
gi|239609550|gb|EEQ86537.1| DNA-directed RNA polymerase I and III polypeptide [Ajellomyces
dermatitidis ER-3]
gi|327350214|gb|EGE79071.1| DNA-directed RNA polymerase I and III polypeptide [Ajellomyces
dermatitidis ATCC 18188]
Length = 380
Score = 188 bits (477), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 126/344 (36%), Positives = 183/344 (53%), Gaps = 49/344 (14%)
Query: 35 QRTRVQCNLDAPIHTENVMYSGAYASMGVDNSLQLDHFCNNFRVEVIRLTKDDMEFDLIG 94
QR + N + + + + G + G ++ +D F N +V + + F L+G
Sbjct: 13 QRKVIGINAETVTNISSTDFPGHWP--GENHEWSIDVFKRNLKVTFHKNEPYEASFSLVG 70
Query: 95 IDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRLGLIPIIVDP------RL 148
+DAAIANAFRRI+IAE+P++AIE V I NNTSVIQDEVLAHRLGL+P+ R
Sbjct: 71 VDAAIANAFRRIMIAEIPSLAIETVYIHNNTSVIQDEVLAHRLGLVPLTGAAEGINWLRW 130
Query: 149 FEYMSEN--DTSNE---KNTIVFKLHVLCERGGPRLTVKTNELKWLPNGSELPLETKPDS 203
F +E D+ +E NTIV L V C + P+ + + + L N + +
Sbjct: 131 FRQPTEGKPDSGSELSDSNTIVLHLSVECTK-NPKASANEEDPQKLYNHAHV-------- 181
Query: 204 NPSSKPRTYTSFSSSQDLLPE-----FSNNPIRPMLDITIARLGPGQEIELEAHAVKGIG 258
+K T+ + PE S NP DI +A+L PGQ+I++E H +KGIG
Sbjct: 182 --YAKDITFHPVGRQEAYFPEPYGAIRSANP-----DILLAKLRPGQKIDIEMHCIKGIG 234
Query: 259 KTHAKWSPVATAWYRMLPEIVLLEDVEDEDAEKLVKTCPVNVFDIEDIGS---------- 308
HAK+SPVATA YR+LP+I +L + +DA K + P V I+ + +
Sbjct: 235 ADHAKFSPVATASYRLLPDIRILRPILGQDALKFARCFPKGVIGIDSVSAEEASQAGSGY 294
Query: 309 ----GKKRATVAQPRACTLCRECLRCGEEWEKRVSIRRVKDHFI 348
G+K+A V P T+ RECLR EE+ +V + R++DHFI
Sbjct: 295 EGHEGEKKAVVLDPFKDTVSRECLRH-EEFRGKVKLGRIRDHFI 337
>gi|354546273|emb|CCE43003.1| hypothetical protein CPAR2_206460 [Candida parapsilosis]
Length = 336
Score = 188 bits (477), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 127/326 (38%), Positives = 177/326 (54%), Gaps = 39/326 (11%)
Query: 32 IEFQRTRVQCNLDAPIHTENVMYSGAYASMGVDNSLQLDHFCNNFRVEVIRLTKDDMEFD 91
IE+ R + D P H SG D S ++ F +F +++ +++ FD
Sbjct: 9 IEYNRVTNTSSTDFPGHQS----SG-------DFSWDIEKFKKSFDIKITNVSERVANFD 57
Query: 92 LIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRLGLIPIIVDPRLFEY 151
LI ID +IANAFRRI+IAE+P++A+E V NTSVIQDEVLAHR+GL+P+ VDP +
Sbjct: 58 LIHIDTSIANAFRRIMIAEVPSVAVETVYSFMNTSVIQDEVLAHRIGLVPLKVDPDSLTW 117
Query: 152 ----MSENDTSNEKNTIVFKLHVLCERG--GPRLTVKTNELKWLPNGSELPLETKPDSNP 205
+ END E NTIV L V C + P+ + NEL N L+ +P
Sbjct: 118 VDKSVDENDRYTEDNTIVLSLDVTCTKNPHAPKNSTNPNELYRNSNVYAKDLKFEP---- 173
Query: 206 SSKPRTYTSFSSSQDLLPEFSNNPIRPM-LDITIARLGPGQEIELEAHAVKGIGKTHAKW 264
SQ L ++ +NP+ P +I +A+L PGQEI L AH + G+G HAK+
Sbjct: 174 ----------QGSQ--LEKYKDNPVVPTDPNILLAKLRPGQEISLRAHCILGVGADHAKF 221
Query: 265 SPVATAWYRMLPEIVLLEDVEDEDAEKLVKTCPVNVFDIEDIGSGKKRATVAQPRACTLC 324
SPVATA YR+LP I + E + E A+K K P V +I+ G A VA R T+
Sbjct: 222 SPVATASYRLLPVIDIKEPITGELAKKFQKCFPPGVIEIDSKG----EAYVADARKDTVS 277
Query: 325 RECLRCGEEWEKRVSIRRVKDHFICK 350
RE LR E+ +V + R +D+FI +
Sbjct: 278 REVLR-HPEFNGKVKLGRQRDYFIFQ 302
>gi|254580391|ref|XP_002496181.1| ZYRO0C12364p [Zygosaccharomyces rouxii]
gi|238939072|emb|CAR27248.1| ZYRO0C12364p [Zygosaccharomyces rouxii]
Length = 335
Score = 187 bits (476), Expect = 5e-45, Method: Compositional matrix adjust.
Identities = 118/303 (38%), Positives = 168/303 (55%), Gaps = 49/303 (16%)
Query: 64 DNSLQLDHFCNNFRVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIAN 123
DN ++ F N F V + LT+ + FDL+ +D +IANAFRRI+I+E+P++A E V N
Sbjct: 28 DNVWDIEKFKNTFDVRIGSLTEREANFDLVHVDTSIANAFRRIMISEVPSVATEYVYFLN 87
Query: 124 NTSVIQDEVLAHRLGLIPIIVDPRLFEY----MSENDTSNEKNTIVFKLHVLCERG---- 175
NTSVIQDEVLAHR+GL+P+ VDP + + + E + ++NTIV L+V C R
Sbjct: 88 NTSVIQDEVLAHRIGLVPLKVDPDMLTWVDHSLPEEEKFTDENTIVMTLNVKCTRNPDAP 147
Query: 176 ----GPRLTVKTN-----ELKWLPNGSELPLETKPDSNPSSKPRTYTSFSSSQDLLPEFS 226
P++ + + +LK+ P GS+ +ET F+
Sbjct: 148 KDCTDPKILYRNSHIYARDLKFEPQGSQ--VET-------------------------FA 180
Query: 227 NNPIRPM-LDITIARLGPGQEIELEAHAVKGIGKTHAKWSPVATAWYRMLPEIVLLEDVE 285
P+ P DI +A+L PGQEI L AH + G+G HAK+SPVATA YR+LP I + E ++
Sbjct: 181 KCPVIPTDPDILLAKLRPGQEISLRAHCILGVGSDHAKFSPVATASYRLLPHIDIREPIK 240
Query: 286 DEDAEKLVKTCPVNVFDIEDIGSGKKRATVAQPRACTLCRECLRCGEEWEKRVSIRRVKD 345
E A+K K P V I + A V R T+ RE LR EE+ +V + RV+D
Sbjct: 241 GELAQKFQKCFPPGVIGINE---STDEAYVQDARKDTVSREVLR-HEEFSNKVKLGRVRD 296
Query: 346 HFI 348
HF+
Sbjct: 297 HFV 299
>gi|380022855|ref|XP_003695251.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed RNA polymerases I and
III subunit RPAC1-like [Apis florea]
Length = 587
Score = 187 bits (476), Expect = 6e-45, Method: Compositional matrix adjust.
Identities = 113/291 (38%), Positives = 171/291 (58%), Gaps = 25/291 (8%)
Query: 69 LDHFCNNFRVEVIRLTKDD--MEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTS 126
L +F F+++VIR ++D+ +EFDLIG ANAFRR+L++E+PTMAIEKV I NNTS
Sbjct: 33 LHNFKKEFKIQVIRESEDNRELEFDLIGYPVGFANAFRRVLLSEVPTMAIEKVYIVNNTS 92
Query: 127 VIQDEVLAHRLGLIPIIVDPRLFEYMS----ENDTSNEKNTIVFKLHVLC--ERGGPRLT 180
+IQDEVLAHRLGLIP+ DPRLFEY S + D ++++T+ ++L + C P+ +
Sbjct: 93 LIQDEVLAHRLGLIPLRADPRLFEYPSSTAKDQDEVSDQDTLRYELKISCTWNSQAPKDS 152
Query: 181 VKTNELKWLPNGSELPLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPMLDITIAR 240
+TN++ +SN S+ + +L P + DI I +
Sbjct: 153 RRTNDM-------------YRNSNVYSRDIKWVPIGHQAELYPRGTEQLGVLENDILICK 199
Query: 241 LGPGQEIELEAHAVKGIGKTHAKWSPVATAWYRMLPEIVLLEDVEDEDAEKLVKTCPVNV 300
+ PGQEI HAVKGIGK HAK+SPVATA YR+LP+I +++ V+ E A++L + V
Sbjct: 200 MRPGQEIHAFMHAVKGIGKDHAKFSPVATASYRLLPDIQIIKPVKGEMADRLKNCFSIGV 259
Query: 301 FDIEDIGSG---KKRATVAQPRACTLCRECLRCGEEWEKRVSIRRVKDHFI 348
++ + G + A V PR + R + E+ + + + R+++H I
Sbjct: 260 IEVIENKPGDPDSREARVKNPRYDSCSRNVFQ-HEDLKGCIRLSRIRNHII 309
>gi|401840259|gb|EJT43153.1| RPC40-like protein [Saccharomyces kudriavzevii IFO 1802]
Length = 326
Score = 187 bits (475), Expect = 6e-45, Method: Compositional matrix adjust.
Identities = 117/290 (40%), Positives = 169/290 (58%), Gaps = 25/290 (8%)
Query: 65 NSLQLDHFCNNFRVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANN 124
N ++ F + +V + L + + FDLI IDA+IANAFRRI+I+E+P +A E V NN
Sbjct: 29 NEWDVEVFKKHLKVNISSLDEREANFDLINIDASIANAFRRIMISEVPCVAAEYVYFFNN 88
Query: 125 TSVIQDEVLAHRLGLIPIIVDPRLFEYMSENDTSNEK----NTIVFKLHVLCERG--GPR 178
TSVIQDEVLAHR+GL+P+ VDP + ++ + +EK NTIV L+V C R P+
Sbjct: 89 TSVIQDEVLAHRIGLVPLKVDPDMLTWVDSSLPDDEKFTDENTIVLSLNVKCTRNPDAPK 148
Query: 179 LTVKTNELKWLPNGSELPLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPMLDITI 238
EL + L+ +P + R T+F++ + P P DI +
Sbjct: 149 DCTDPKELYNNAHVYARDLKFEP------QGRQSTTFAACSVV-------PADP--DILL 193
Query: 239 ARLGPGQEIELEAHAVKGIGKTHAKWSPVATAWYRMLPEIVLLEDVEDEDAEKLVKTCPV 298
A+L PGQEI L+AH + GIG HAK+SPV+TA YR+LP+I +L+ ++ E A++ K P
Sbjct: 194 AKLRPGQEISLKAHCILGIGGDHAKFSPVSTASYRLLPQINILQSIKGESAKRFQKCFPP 253
Query: 299 NVFDIEDIGSGKKRATVAQPRACTLCRECLRCGEEWEKRVSIRRVKDHFI 348
V I+D + A V R T+ RE LR EE+ +V + RV++HFI
Sbjct: 254 GVIGIDDTS---REAYVKDARKDTVSREVLRY-EEFADKVKLGRVRNHFI 299
>gi|403222412|dbj|BAM40544.1| DNA-directed RNA polymerases I and III subunit [Theileria
orientalis strain Shintoku]
Length = 305
Score = 187 bits (474), Expect = 9e-45, Method: Compositional matrix adjust.
Identities = 111/281 (39%), Positives = 162/281 (57%), Gaps = 42/281 (14%)
Query: 75 NFRVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLA 134
+ RV ++ T+ ++ G+D + ANA RRIL++E+PT+A+E V I NT VIQDE+LA
Sbjct: 34 SLRVNFLKKTESHSIVEIEGLDVSFANALRRILLSEVPTLAVETVQIYQNTGVIQDELLA 93
Query: 135 HRLGLIPIIVDPRLFEYMSENDTSNEKNTIVFKLHVLCERGGPR----LTVKTNELKWLP 190
HRLGLIP V+P LF + + + N+KN++ FKL V +R P L V ++ LKW+P
Sbjct: 94 HRLGLIPFNVNPDLFTFKNCEEI-NDKNSVCFKLKVKYDRNEPNSGNYLPVYSSFLKWVP 152
Query: 191 NGSELPLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPMLD-ITIARLGPGQEIEL 249
SS+Q+ F NNP +P+ D I I +L PGQEI+L
Sbjct: 153 ------------------------LSSNQEA--TFKNNPPKPVHDNILITKLAPGQEIDL 186
Query: 250 EAHAVKGIGKTHAKWSPVATAWYRMLPEIVLLEDVEDEDAEK--LVKTCPVNVFDIEDIG 307
+ KG GK HAKWSPV+TA+Y+ +P I + + + D+EK L CP++VF I++
Sbjct: 187 NVYLEKGTGKVHAKWSPVSTAFYKFMPSIKINDTPKLSDSEKRDLATICPMDVFSIKN-- 244
Query: 308 SGKKRATVAQPRACTLCRECLRCGEEWEKRVSIRRVKDHFI 348
+V P CT CR+CL E + K V+I ++ +H I
Sbjct: 245 ---SEISVENPLNCTSCRKCL---ETYPKHVTISKLVNHII 279
>gi|403213911|emb|CCK68413.1| hypothetical protein KNAG_0A07600 [Kazachstania naganishii CBS
8797]
Length = 334
Score = 187 bits (474), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 115/307 (37%), Positives = 172/307 (56%), Gaps = 50/307 (16%)
Query: 60 SMGVDNSLQLDHFCNNFRVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKV 119
S DN+ ++ F F +++ +++ + FDL+ ID ++ANAFRRI+I+E+P++A E V
Sbjct: 24 SSARDNAWDVEKFRERFDIKISSMSEREANFDLVHIDTSVANAFRRIMISEVPSVAAEYV 83
Query: 120 LIANNTSVIQDEVLAHRLGLIPIIVDPRLFEY----MSENDTSNEKNTIVFKLHVLCERG 175
+ NNTSVIQDEVLAHR+G+IP+ VDP + + +SE + ++NT+V L+V C R
Sbjct: 84 YVMNNTSVIQDEVLAHRIGMIPLKVDPDMLTWIDQSLSEEEKFTDENTVVLTLNVKCTRN 143
Query: 176 --------GPRL-----TVKTNELKWLPNGSELPLETKPDSNPSSKPRTYTSFSSSQDLL 222
P++ +V +L++ P G + LET
Sbjct: 144 LNAPKDCTDPKILYKNSSVYARDLRFEPQGKQ--LET----------------------- 178
Query: 223 PEFSNNPIRPM-LDITIARLGPGQEIELEAHAVKGIGKTHAKWSPVATAWYRMLPEIVLL 281
F++ P+ P DI +A+L P QEI L H + GIG HAK+SPVATA YR+LP I +L
Sbjct: 179 --FADCPVVPSDPDILLAKLRPNQEISLRVHCILGIGSDHAKFSPVATASYRLLPHINIL 236
Query: 282 EDVEDEDAEKLVKTCPVNVFDIEDIGSGKKRATVAQPRACTLCRECLRCGEEWEKRVSIR 341
E + E A++ P V I+ G +A V R T+ RE LR EE++ +V +
Sbjct: 237 EPITGESAKRFQACFPQGVIGIDSEG----KAVVENARKDTVSREVLRY-EEFKDKVKLG 291
Query: 342 RVKDHFI 348
RV+DHFI
Sbjct: 292 RVRDHFI 298
>gi|157116377|ref|XP_001658447.1| DNA-directed RNA polymerase [Aedes aegypti]
gi|108876498|gb|EAT40723.1| AAEL007568-PA [Aedes aegypti]
Length = 335
Score = 187 bits (474), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 111/294 (37%), Positives = 164/294 (55%), Gaps = 45/294 (15%)
Query: 69 LDHFCNNFRVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVI 128
+ F ++ ++R ++++EFD++G++ AIANAFRR++++E+P+MAIEKV I NNTS+I
Sbjct: 37 FERFKQQLQIVIVRYEENELEFDMVGVNPAIANAFRRLMLSEVPSMAIEKVHIYNNTSII 96
Query: 129 QDEVLAHRLGLIPIIVDPRLFEYMS-ENDTSNEKNTIVFKLHVLCERGGPRLTVKTN--- 184
QDEVLAHRLGLIP+ DPRLFEY + END N +T+ F+L V C + T TN
Sbjct: 97 QDEVLAHRLGLIPLRADPRLFEYKTNENDPPNALDTLEFELKVKCTKKNKDSTEITNNDS 156
Query: 185 ----------ELKWLPNGSELPLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPML 234
++KW+P G++ + + D P
Sbjct: 157 MYKNHSIYSGQIKWIPVGNQASIYKEADVGPIDD-------------------------- 190
Query: 235 DITIARLGPGQEIELEAHAVKGIGKTHAKWSPVATAWYRMLPEIVLLEDVEDEDAEKLVK 294
DI I+++ PG E +++ A+KGIGK HAK+SPVATA YR+LPE+ L V DA L K
Sbjct: 191 DILISKMRPGHEFDIKLFAMKGIGKDHAKFSPVATASYRLLPEVRLTRPVVGRDALLLQK 250
Query: 295 TCPVNVFDIEDIGSGKKRATVAQPRACTLCRECLRCGEEWEKRVSIRRVKDHFI 348
V +I+ +A V R + R R + + V++ RV++HFI
Sbjct: 251 CFSPGVIEID----KDDQAYVKDARYDSCSRNVYRYPQIADA-VTLSRVRNHFI 299
>gi|367019632|ref|XP_003659101.1| hypothetical protein MYCTH_62866 [Myceliophthora thermophila ATCC
42464]
gi|347006368|gb|AEO53856.1| hypothetical protein MYCTH_62866 [Myceliophthora thermophila ATCC
42464]
Length = 374
Score = 186 bits (473), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 133/356 (37%), Positives = 185/356 (51%), Gaps = 51/356 (14%)
Query: 24 VPQKLPPHIEFQRTRVQCNLDAPIHTENVM------YSGAYASMGVDNSLQLDHFCNNFR 77
+P K P E +R ++ IH E V Y G Y G D+S ++ F FR
Sbjct: 1 MPHKPPTEEELERRKI-----VGIHEETVTNVSSTDYPGHYP--GEDHSWDIEAFRRGFR 53
Query: 78 VEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRL 137
VE + + F LIGIDA+IANAFRRI+IA++PT+AIE V + NNTSVIQDEVLAHRL
Sbjct: 54 VEFHKNDPFEASFSLIGIDASIANAFRRIMIADIPTLAIETVFVNNNTSVIQDEVLAHRL 113
Query: 138 GLIPIIVDPR-LFEYM----------SENDTSNEKNTIVFKLHVLCERGGPRLTVKTNEL 186
GLIP + L +++ N++ + NT+ +L V CE +T+
Sbjct: 114 GLIPFKGGHKGLHKFLKFWRRPDDESQVNNSYYDYNTVSLRLEVKCEHNENAAPGETDPT 173
Query: 187 KWLPNGSELPLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPMLDITIARLGPGQE 246
K + + + P + T + S D + P+ P DI IA+L PGQE
Sbjct: 174 KLYKHAHVYARDI--EFCPVGRQ---TKYFSGDDAIA-----PVNP--DILIAKLRPGQE 221
Query: 247 IELEAHAVKGIGKTHAKWSPVATAWYRMLPEIVLLEDVEDEDAEKLVKTCPVNVFDIEDI 306
I L H KG+G HAK+SPVATA YR++P I + + DAEK + P V +E +
Sbjct: 222 ISLTMHMHKGVGSDHAKFSPVATASYRLMPVIKIERPILGADAEKFARCFPRGVIALEKV 281
Query: 307 --------GSGKK------RATVAQPRACTLCRECLRCGEEWEKRVSIRRVKDHFI 348
GSG + +A VA P T+ RECLR +E++ +V + R +DHFI
Sbjct: 282 TKEEAAQKGSGYEGHEGELKAVVADPMRDTVSRECLRH-DEFKGKVKLGRRRDHFI 336
>gi|346979352|gb|EGY22804.1| DNA-directed RNA polymerases I and III subunit RPAC1 [Verticillium
dahliae VdLs.17]
Length = 375
Score = 186 bits (473), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 121/328 (36%), Positives = 165/328 (50%), Gaps = 71/328 (21%)
Query: 62 GVDNSLQLDHFCNNFRVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLI 121
G DNS LD F NFRV +L+ + F LIG+DA+IANA RRILI+E+PT AIE V I
Sbjct: 39 GEDNSWSLDTFRENFRVRYHQLSPSESSFSLIGVDASIANALRRILISEIPTFAIETVYI 98
Query: 122 ANNTSVIQDEVLAHRLGLIPIIVDPR----LFEYMSENDTSN-----EKNTIVFKLHVLC 172
NNTSVIQDEVLAHRLGL+P + + +N + NTI +L + C
Sbjct: 99 YNNTSVIQDEVLAHRLGLVPFTANKAGLRDFLRWRKKNPDGTPGDIFDYNTIQLRLRIEC 158
Query: 173 ER---GGP----------RLTVKTNELKWLPNGSEL-----PLETKPDSNPSSKPRTYTS 214
R P V ++++++P+G +L PL T +NP
Sbjct: 159 TRNPDAAPGEIDATKAFRNAHVHASDIEYVPSGRQLEYFDGPLNTVRPTNP--------- 209
Query: 215 FSSSQDLLPEFSNNPIRPMLDITIARLGPGQEIELEAHAVKGIGKTHAKWSPVATAWYRM 274
DI +A+L PGQ +E++ H KGIG HAK+SPVATA YR+
Sbjct: 210 --------------------DILLAKLRPGQVLEMDMHMHKGIGSDHAKFSPVATASYRL 249
Query: 275 LPEIVLLEDVEDEDAEKLVKTCPVNVFDIEDIGS--------------GKKRATVAQPRA 320
LP I + + DAEK + P V IE + + G+++A V
Sbjct: 250 LPTITITRPILGADAEKFARCFPAGVIGIERVSADEARTPGSGYEGHEGERKAVVRDAMK 309
Query: 321 CTLCRECLRCGEEWEKRVSIRRVKDHFI 348
T+ RECLR E++ +V + R +DHFI
Sbjct: 310 DTVSRECLRHA-EFQGKVKLGRRRDHFI 336
>gi|322783207|gb|EFZ10793.1| hypothetical protein SINV_03179 [Solenopsis invicta]
Length = 344
Score = 186 bits (473), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 115/299 (38%), Positives = 163/299 (54%), Gaps = 20/299 (6%)
Query: 58 YASMGVDNSLQLDHFCNNFRVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIE 117
Y D S L+ N ++ +++ ++EFD+IG ++ANAFRRIL++E+PTMAIE
Sbjct: 20 YTYNTSDKSTALEKLVKNLKINIVQEQDREIEFDIIGCHTSLANAFRRILLSEVPTMAIE 79
Query: 118 KVLIANNTSVIQDEVLAHRLGLIPIIVDPRLFEYMSEN----DTSNEKNTIVFKLHVLCE 173
KV I NNTS++QDE+LAHRLGLIP+ DPRLFEY N D ++++T+ ++L V C
Sbjct: 80 KVYIVNNTSLLQDEILAHRLGLIPLRADPRLFEYPPSNARADDEISDQDTLRYELKVTC- 138
Query: 174 RGGPRLTVKTNELKWLPNGSELPLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPM 233
TV P S P + +S SK + ++ P +
Sbjct: 139 ------TVNPQA----PKNSHNPEDMYKNSKVYSKDIKWVPIGQQGEMFPRGAEEFGVLE 188
Query: 234 LDITIARLGPGQEIELEAHAVKGIGKTHAKWSPVATAWYRMLPEIVLLEDVEDEDAEKLV 293
DI + ++ PG EI L HA+K IGK HAK+SPVATA YR+LP I L + V D+DA+ L
Sbjct: 189 NDILLCKMRPGHEIHLFMHAIKSIGKDHAKFSPVATASYRLLPAIRLTKPVRDKDADLLQ 248
Query: 294 KTCPVNVFDI----EDIGSGKKRATVAQPRACTLCRECLRCGEEWEKRVSIRRVKDHFI 348
V +I + G + A V R + R R ++ + V + RVKDHFI
Sbjct: 249 SCFSPGVIEIVEQETNTGQKYREARVKNARYDSCSRNVHRY-DQLKNCVELSRVKDHFI 306
>gi|341897190|gb|EGT53125.1| hypothetical protein CAEBREN_31421 [Caenorhabditis brenneri]
Length = 365
Score = 186 bits (473), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 118/298 (39%), Positives = 168/298 (56%), Gaps = 30/298 (10%)
Query: 67 LQLDHFCNNFRVEVIRLTKDDM--EFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANN 124
L + +C+ +V+++ ++D M EFD+I I+A IANA RRIL+AE+PTMA+EK+ + N
Sbjct: 44 LNVSEYCDKIQVKMVNESEDKMTLEFDIIRIEAPIANALRRILLAEVPTMALEKIYLYQN 103
Query: 125 TSVIQDEVLAHRLGLIPIIVDPRLFEYMSENDTS-NEKNT-------------IVFKLHV 170
TSVIQDEVL HRLGL+P+ VDPR F++ +E NEK ++FK++V
Sbjct: 104 TSVIQDEVLCHRLGLLPLRVDPRAFQFPTEKVVGINEKGVDCDEEPEGDPTRNLIFKINV 163
Query: 171 LCERGGPRLTVKTNELKWLPNGSELPLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPI 230
C + + NG+ P + S+ S+ + + ++ + +N P
Sbjct: 164 ACTKN-----------RNAANGTTDPKQLYHHSSVYSRAFEWIPIGNQKEGYTK-NNKPK 211
Query: 231 RPMLDITIARLGPGQEIELEAHAVKGIGKTHAKWSPVATAWYRMLPEIVLLEDVEDEDAE 290
DI +A+L PGQEIE HAVKGIG+ HAK+SPVATA YR+LP I L ++ E AE
Sbjct: 212 MVSDDILVAKLRPGQEIEASCHAVKGIGRDHAKFSPVATASYRLLPTIRLNAEISGEAAE 271
Query: 291 KLVKTCPVNVFDIEDIGSGKKRATVAQPRACTLCRECLRCGEEWEKRVSIRRVKDHFI 348
+L V IE G+ KK A V RA T R R E+ + V + + K HFI
Sbjct: 272 RLQSVFSEGVIGIEKKGN-KKIAVVKDARADTCSRNVFR-HEDLAQVVHLGKNKQHFI 327
>gi|383850329|ref|XP_003700748.1| PREDICTED: DNA-directed RNA polymerases I and III subunit
RPAC1-like [Megachile rotundata]
Length = 509
Score = 186 bits (473), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 114/305 (37%), Positives = 174/305 (57%), Gaps = 47/305 (15%)
Query: 69 LDHFCNNFRVEVIRLTKDD--MEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTS 126
L +F F+++V+R ++D+ +EFDLIG +ANAFRR+L++E+P+MAIEKV I NNTS
Sbjct: 32 LHNFKKEFKIQVVRESEDERELEFDLIGYPVGLANAFRRVLLSEVPSMAIEKVYIVNNTS 91
Query: 127 VIQDEVLAHRLGLIPIIVDPRLFEYMS----ENDTSNEKNTIVFKLHVLCE------RGG 176
++QDEVLAHRLGLIP+ DPRLF+Y S + D ++++T+ ++L V C +
Sbjct: 92 LLQDEVLAHRLGLIPLQADPRLFDYPSSTAKDEDEVSDQDTLRYELKVTCTWNPQAPKDS 151
Query: 177 PRLT-------VKTNELKWLPNGSELPLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNP 229
R+T V + ++KW+P G + L PR ++
Sbjct: 152 RRITDMYRNSNVYSKDIKWVPIGRQAEL----------YPRGTEQLGVLEN--------- 192
Query: 230 IRPMLDITIARLGPGQEIELEAHAVKGIGKTHAKWSPVATAWYRMLPEIVLLEDVEDEDA 289
DI I ++ PGQEI HA+KGIGK HAK+SPVATA YR+LP+I L++ V E A
Sbjct: 193 -----DILICKMRPGQEIHAFMHAIKGIGKDHAKFSPVATASYRLLPDIQLIKPVRGEMA 247
Query: 290 EKLVKTCPVNVFDIEDIGSG---KKRATVAQPRACTLCRECLRCGEEWEKRVSIRRVKDH 346
++L + V ++ + G + A V PR + R + E+ + V + RV++H
Sbjct: 248 DRLKNCFSIGVIEVIENKPGDPDSREARVKNPRYDSCSRNVFQ-HEDLKGCVQLSRVRNH 306
Query: 347 FICKY 351
I ++
Sbjct: 307 IISQF 311
>gi|401623159|gb|EJS41266.1| rpc40p [Saccharomyces arboricola H-6]
Length = 335
Score = 186 bits (472), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 121/325 (37%), Positives = 177/325 (54%), Gaps = 38/325 (11%)
Query: 31 HIEFQRTRVQCNLDAPIHTENVMYSGAYASMGVDNSLQLDHFCNNFRVEVIRLTKDDMEF 90
+IE+ R + D P ++ G +N + F +F V + L + F
Sbjct: 6 NIEYNRVTNTTSTDFP----------GFSKDG-ENEWDVKKFKKDFEVNISSLDAREANF 54
Query: 91 DLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRLGLIPIIVDPRLFE 150
DL+ ID +IANAFRRI+I+E+P++A E V NNTSVIQDEVLAHR+GL+P+ VDP +
Sbjct: 55 DLMKIDTSIANAFRRIMISEVPSVAAEYVYFFNNTSVIQDEVLAHRIGLVPLKVDPDMLT 114
Query: 151 YMSENDTSNEK----NTIVFKLHVLCERG--GPRLTVKTNELKWLPNGSELPLETKPDSN 204
++ N +EK NT+V L+V C R P+ + EL + L+ +P
Sbjct: 115 WVDSNLPDDEKFTDENTVVLSLNVKCTRNPDAPKGSTDPRELYNNAHVYARDLKFEPQGR 174
Query: 205 PSSKPRTYTSFSSSQDLLPEFSNNPIRPM-LDITIARLGPGQEIELEAHAVKGIGKTHAK 263
S+ F+N P+ P DI +A+L PGQEI L+AH + GIG HAK
Sbjct: 175 QSTT----------------FANCPVVPADPDILLAKLRPGQEILLKAHCILGIGGDHAK 218
Query: 264 WSPVATAWYRMLPEIVLLEDVEDEDAEKLVKTCPVNVFDIEDIGSGKKRATVAQPRACTL 323
+SPV+TA YR+LP+I +L+ ++ E A++ K P V I++ A V R T+
Sbjct: 219 FSPVSTASYRLLPQINILKPIKGEAAKRFQKCFPPGVIGIDE---NSDEAYVEDARKDTV 275
Query: 324 CRECLRCGEEWEKRVSIRRVKDHFI 348
RE LR EE+ +V + RV++HFI
Sbjct: 276 SREVLRY-EEFADKVKLGRVRNHFI 299
>gi|344232398|gb|EGV64277.1| hypothetical protein CANTEDRAFT_113900 [Candida tenuis ATCC 10573]
gi|344232399|gb|EGV64278.1| hypothetical protein CANTEDRAFT_113900 [Candida tenuis ATCC 10573]
Length = 336
Score = 186 bits (471), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 121/322 (37%), Positives = 173/322 (53%), Gaps = 35/322 (10%)
Query: 32 IEFQRTRVQCNLDAPIHTENVMYSGAYASMGVDNSLQLDHFCNNFRVEVIRLTKDDMEFD 91
IE+ R + D P H+ N D S ++ N+ V++ +L + + FD
Sbjct: 9 IEYNRVTNTTSTDFPGHSSNE-----------DQSWDIEKIKNSLEVKISKLDERESNFD 57
Query: 92 LIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRLGLIPIIVDPRLFEY 151
L+ ID +IANA RRI+I+E+P++A E + + NNTSVIQDEVLAHR+GLIP+ DP L +
Sbjct: 58 LVHIDTSIANALRRIMISEVPSVAAETIYVFNNTSVIQDEVLAHRIGLIPLKADPDLLTW 117
Query: 152 M----SENDTSNEKNTIVFKLHVLCERGGPRLTVKTNELKWLPNGSELPLETKPDSNPSS 207
+ E ++NTIV L V C T N P GS P E +S+ +
Sbjct: 118 VDTAQDEKSKYTDENTIVLTLDVTC-------THNPN----APKGSTNPKELYRNSHVYA 166
Query: 208 KPRTYTSFSSSQDLLPEFSNNPIRPM-LDITIARLGPGQEIELEAHAVKGIGKTHAKWSP 266
K + +L F NP+ +I IA+L PGQEI L AH + G+G HAK+SP
Sbjct: 167 KDLKFEPQGKQVEL---FKGNPVTAADPNILIAKLRPGQEISLRAHCILGVGSDHAKFSP 223
Query: 267 VATAWYRMLPEIVLLEDVEDEDAEKLVKTCPVNVFDIEDIGSGKKRATVAQPRACTLCRE 326
VATA YR++P I + + + E A++ + P V DI+ G A V R T+ RE
Sbjct: 224 VATASYRLMPVIDIKQPISGEQAKRFQRCFPPGVVDIDSKG----EAYVKDARRDTVSRE 279
Query: 327 CLRCGEEWEKRVSIRRVKDHFI 348
LR EE++ +V + R +DHFI
Sbjct: 280 VLR-HEEFDGKVKLGRKRDHFI 300
>gi|308508009|ref|XP_003116188.1| hypothetical protein CRE_09265 [Caenorhabditis remanei]
gi|308251132|gb|EFO95084.1| hypothetical protein CRE_09265 [Caenorhabditis remanei]
Length = 366
Score = 186 bits (471), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 120/306 (39%), Positives = 162/306 (52%), Gaps = 56/306 (18%)
Query: 72 FCNNFRVEVIRLTKDDM--EFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQ 129
+C+N V ++ ++D M EFD+ I+A IANA RR+LIAE+PTMA+EK+ + NTSVIQ
Sbjct: 50 YCDNIHVAMVNESEDKMTLEFDITHIEAPIANALRRVLIAEVPTMALEKIYLYQNTSVIQ 109
Query: 130 DEVLAHRLGLIPIIVDPRLFEYMSENDTS-NEKNT-------------IVFKLHVLCERG 175
DEVL HRLGL+P+ VDPR F++ +E NEK ++FK++V C +
Sbjct: 110 DEVLCHRLGLLPLCVDPRGFQFPTEKVVGINEKGVDCDEEPAGDATRNLIFKINVSCTKN 169
Query: 176 GPRL-------------TVKTNELKWLPNGSELPLETKPDSNPSSKPRTYTSFSSSQDLL 222
L +V + W+P G + K + S+ PR T
Sbjct: 170 RNALPNSTDPKTLYHHSSVYSGSFAWVPIGDQ-----KSNYTDSTTPRMVTD-------- 216
Query: 223 PEFSNNPIRPMLDITIARLGPGQEIELEAHAVKGIGKTHAKWSPVATAWYRMLPEIVLLE 282
DI +A+L PGQEIE HAVKGIG+ HAK+SPVATA YR+LP I L
Sbjct: 217 ------------DILVAKLRPGQEIEASCHAVKGIGRDHAKFSPVATASYRLLPTIRLNA 264
Query: 283 DVEDEDAEKLVKTCPVNVFDIEDIGSGKKRATVAQPRACTLCRECLRCGEEWEKRVSIRR 342
++ E AE+L V +IE GS K+ A V R T R R E+ K V + +
Sbjct: 265 EITGEAAERLKSVFSEGVIEIEKKGS-KRVAVVKDARKDTCSRNVFR-HEDLAKVVQLGK 322
Query: 343 VKDHFI 348
K HFI
Sbjct: 323 NKQHFI 328
>gi|119189173|ref|XP_001245193.1| hypothetical protein CIMG_04634 [Coccidioides immitis RS]
gi|392868091|gb|EAS33833.2| DNA-directed RNA polymerase I and III polypeptide [Coccidioides
immitis RS]
Length = 382
Score = 186 bits (471), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 126/339 (37%), Positives = 182/339 (53%), Gaps = 39/339 (11%)
Query: 35 QRTRVQCNLDAPIHTENVMYSGAYASMGVDNSLQLDHFCNNFRVEVIRLTKDDMEFDLIG 94
+R + N + H + G + G D+S ++ F NF+V + + F LIG
Sbjct: 13 KRKIIGINPETVTHISATDFPGHWP--GEDHSWSVNKFKENFQVTFHKNDPFEATFSLIG 70
Query: 95 IDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRLGLIPIIVDPRLFEYMS- 153
+DAA+ANAFRRILIAE+P++AIE V I NNTSV+ DEVL+HRLGL+P+ +MS
Sbjct: 71 VDAAVANAFRRILIAEIPSLAIEFVFIHNNTSVLHDEVLSHRLGLVPLKGSLEGINWMSW 130
Query: 154 -------ENDT---SNEKNTIVFKLHVLCERGGPRLTVKTNELKWLPNGSELPLETKPDS 203
E D+ +++ NTIV KL+V C + + + K N + +
Sbjct: 131 FRMPKEGEPDSGSPASDSNTIVLKLNVECTKNQNARPDEDDPTKLYNNAHVYAKDIVFE- 189
Query: 204 NPSSKPRTYTSFSSSQDLLPEFSNNPIRPMLDITIARLGPGQEIELEAHAVKGIGKTHAK 263
P + + FS ++ P P DI +A+L PGQ+I++E H +KGIG+ HAK
Sbjct: 190 -PVGRQAAF--FSGPHGVI-----QPAYP--DILLAKLRPGQKIDIEMHCIKGIGQDHAK 239
Query: 264 WSPVATAWYRMLPEIVLLEDVEDEDAEKLVKTCPVNVFDIEDI--------GS------G 309
+SPVATA YR+LP+I + + DA K P V IE + GS G
Sbjct: 240 FSPVATASYRLLPDIQITRPILGNDAVKFANCFPKGVIGIEQVTAEDAAQAGSGYEGQEG 299
Query: 310 KKRATVAQPRACTLCRECLRCGEEWEKRVSIRRVKDHFI 348
+K+A V P T+ RECLR EE++ +V + RV+DHFI
Sbjct: 300 QKKAVVVDPFKDTVSRECLRH-EEFKGKVKLGRVRDHFI 337
>gi|154279942|ref|XP_001540784.1| DNA-directed RNA polymerases I and III 40 kDa polypeptide
[Ajellomyces capsulatus NAm1]
gi|150412727|gb|EDN08114.1| DNA-directed RNA polymerases I and III 40 kDa polypeptide
[Ajellomyces capsulatus NAm1]
Length = 380
Score = 186 bits (471), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 123/339 (36%), Positives = 184/339 (54%), Gaps = 39/339 (11%)
Query: 35 QRTRVQCNLDAPIHTENVMYSGAYASMGVDNSLQLDHFCNNFRVEVIRLTKDDMEFDLIG 94
QR + N + + + + G + G ++ +D F N +V + + F L+G
Sbjct: 13 QRKVIGINAETVTNISSTDFPGHWP--GENHEWSIDEFKRNLKVTFHKNEPYEASFSLVG 70
Query: 95 IDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRLGLIPIIVDP------RL 148
+DAAIANAFRRI+IAE+P++AIE V I NNTSVIQDEVLAHRLGL+P+ R
Sbjct: 71 VDAAIANAFRRIMIAEIPSLAIETVYIHNNTSVIQDEVLAHRLGLVPLTGSSEGINWLRW 130
Query: 149 FEYMSEN--DTSNE---KNTIVFKLHVLCERGGPRLTVKTNELKWLPNGSELPLETKPDS 203
F +E D+ +E NT+V L+V C P+ + ++ + N + +
Sbjct: 131 FRQPTEGRPDSGSELADYNTVVLHLNVECT-NNPKASANEDDPQKRYNHAHV-YAKDITF 188
Query: 204 NPSSKPRTYTSFSSSQDLLPEFSNNPIRPMLDITIARLGPGQEIELEAHAVKGIGKTHAK 263
+P + TY F ++ S NP DI +A+L PGQ+I++E H VKGIG HAK
Sbjct: 189 HPVGRQETY--FQEPDGVIR--SANP-----DILLAKLRPGQKIDIEMHCVKGIGADHAK 239
Query: 264 WSPVATAWYRMLPEIVLLEDVEDEDAEKLVKTCPVNVFDIEDIGS--------------G 309
+SPVATA YR+LP+I ++ + DA K + P V I+ + + G
Sbjct: 240 FSPVATASYRLLPDIKIIRPILGNDALKFARCFPKGVIGIDSVSAEEASRAGSGYEGHEG 299
Query: 310 KKRATVAQPRACTLCRECLRCGEEWEKRVSIRRVKDHFI 348
+K+A V P T+ RECLR +E++ +V + R++DHFI
Sbjct: 300 EKKAVVVDPFKDTMSRECLRH-DEFQGKVKLGRIRDHFI 337
>gi|341888283|gb|EGT44218.1| hypothetical protein CAEBREN_24695 [Caenorhabditis brenneri]
Length = 365
Score = 186 bits (471), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 118/298 (39%), Positives = 167/298 (56%), Gaps = 30/298 (10%)
Query: 67 LQLDHFCNNFRVEVIRLTKDDM--EFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANN 124
L + +C+ +V+++ ++D M EFD+I I+A IANA RRIL+AE+PTMA+EK+ + N
Sbjct: 44 LNVTEYCDKIQVKMVNESEDKMTLEFDIIRIEAPIANALRRILLAEVPTMALEKIYLYQN 103
Query: 125 TSVIQDEVLAHRLGLIPIIVDPRLFEYMSENDTS-NEKNT-------------IVFKLHV 170
TSVIQDEVL HRLGL+P+ VDPR F++ +E NEK ++FK++V
Sbjct: 104 TSVIQDEVLCHRLGLLPLRVDPRAFQFPTEKVVGINEKGVDCDEEPEGDPTRNLIFKINV 163
Query: 171 LCERGGPRLTVKTNELKWLPNGSELPLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPI 230
C + + NG+ P + S+ S+ + + ++ + N P
Sbjct: 164 ACTKN-----------RNAANGTTDPKQLYHHSSVYSRAFEWIPIGNQKEGYTK-QNKPK 211
Query: 231 RPMLDITIARLGPGQEIELEAHAVKGIGKTHAKWSPVATAWYRMLPEIVLLEDVEDEDAE 290
DI +A+L PGQEIE HAVKGIG+ HAK+SPVATA YR+LP I L ++ E AE
Sbjct: 212 MVSDDILVAKLRPGQEIEASCHAVKGIGRDHAKFSPVATASYRLLPTIRLNAEISGEAAE 271
Query: 291 KLVKTCPVNVFDIEDIGSGKKRATVAQPRACTLCRECLRCGEEWEKRVSIRRVKDHFI 348
+L V IE G+ KK A V RA T R R E+ + V + + K HFI
Sbjct: 272 RLQSVFSEGVIGIEKKGN-KKIAVVKDARADTCSRNVFR-HEDLAQVVHLGKNKQHFI 327
>gi|302414524|ref|XP_003005094.1| DNA-directed RNA polymerases I and III subunit RPAC1 [Verticillium
albo-atrum VaMs.102]
gi|261356163|gb|EEY18591.1| DNA-directed RNA polymerases I and III subunit RPAC1 [Verticillium
albo-atrum VaMs.102]
Length = 375
Score = 186 bits (471), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 119/328 (36%), Positives = 166/328 (50%), Gaps = 71/328 (21%)
Query: 62 GVDNSLQLDHFCNNFRVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLI 121
G DNS LD F NFRV +L+ + F LIG+DA+IANA RRILI+E+PT+AIE V I
Sbjct: 39 GEDNSWSLDTFRENFRVRYHQLSPSESSFSLIGVDASIANALRRILISEIPTLAIETVYI 98
Query: 122 ANNTSVIQDEVLAHRLGLIPIIVDPR----LFEYMSENDTSN-----EKNTIVFKLHVLC 172
NNTSVIQDEVLAHRLGL+P + + +N + NT+ +L + C
Sbjct: 99 YNNTSVIQDEVLAHRLGLVPFTANKAGLRDFLRWRKKNPDGTPGDIFDYNTVQLRLRIEC 158
Query: 173 ER---GGP----------RLTVKTNELKWLPNGSEL-----PLETKPDSNPSSKPRTYTS 214
R P V ++++++P+G +L PL T +NP
Sbjct: 159 TRNPDAAPGEIDSTKAFRNAHVHASDIEYVPSGRQLEYFDGPLNTVRPTNP--------- 209
Query: 215 FSSSQDLLPEFSNNPIRPMLDITIARLGPGQEIELEAHAVKGIGKTHAKWSPVATAWYRM 274
DI +A+L PGQ +E++ H KGIG HAK+SPVATA YR+
Sbjct: 210 --------------------DILLAKLRPGQVLEMDMHMHKGIGSDHAKFSPVATASYRL 249
Query: 275 LPEIVLLEDVEDEDAEKLVKTCPVNVFDIEDIGS--------------GKKRATVAQPRA 320
LP I + + DA+K + P V IE + + G+++A V
Sbjct: 250 LPTITITRPILGADADKFARCFPAGVIGIERVSADEARTPGSGYEGHEGERKAVVRDAMK 309
Query: 321 CTLCRECLRCGEEWEKRVSIRRVKDHFI 348
T+ RECLR E++ +V + R +DHFI
Sbjct: 310 DTVSRECLRHA-EFQGKVKLGRRRDHFI 336
>gi|336464897|gb|EGO53137.1| DNA-directed RNA polymerases I and III 40 kDa polypeptide
[Neurospora tetrasperma FGSC 2508]
Length = 378
Score = 186 bits (471), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 125/339 (36%), Positives = 180/339 (53%), Gaps = 36/339 (10%)
Query: 29 PPHIEFQRTRVQCNLDAPIHTENVMYSGAYASMGVDNSLQLDHFCNNFRVEVIRLTKDDM 88
P +E +R V N + + + + G Y G D+S ++ F + RVE + +
Sbjct: 19 PEEVE-KRNTVHINAETVTNVTSTDFPGFYP--GEDHSWDIEKFRESVRVEFHQNDPYEA 75
Query: 89 EFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRLGLIPIIVDPR- 147
+F LIG+DA+IANAFRRI+IA++PT+AIE + + NNTSVIQDEVL HRLGLIP
Sbjct: 76 QFSLIGVDASIANAFRRIMIADIPTLAIEDIFMWNNTSVIQDEVLGHRLGLIPFTGGKEG 135
Query: 148 ---LFEYMSENDTSNEKNTIVFKLHVLCERGGPRLTVKTNELKWLPNGSELPLETKPDSN 204
++ + +T + NT+ +L V CE NE P S+ P E +++
Sbjct: 136 LHNFLKWYKKGETPCDYNTVELELKVKCE---------NNEN--APADSKDPKELYHNAH 184
Query: 205 PSSKPRTYTSFSSSQDLLPEFSNNPIRPML-DITIARLGPGQEIELEAHAVKGIGKTHAK 263
+K + N IRP DI +A++ PGQEI+L H KG+G HAK
Sbjct: 185 VYAKDIKFVPKGRQAKYFS--GENAIRPTNPDILVAKMRPGQEIDLTMHMHKGVGSDHAK 242
Query: 264 WSPVATAWYRMLPEIVLLEDVEDEDAEKLVKTCPVNVFDIEDI--------GSGKK---- 311
+SPVATA YR++P I +LE + DAEK K P V +E + GSG +
Sbjct: 243 FSPVATASYRLMPTITILEPILGRDAEKFQKCFPEGVIGLEKVTKEEAKKKGSGYEGHEG 302
Query: 312 --RATVAQPRACTLCRECLRCGEEWEKRVSIRRVKDHFI 348
+A V T+ RECLR +E++ +V + R +DHFI
Sbjct: 303 ELKAVVLDAMRDTVSRECLRH-DEFKDKVKLGRRRDHFI 340
>gi|317026864|ref|XP_001399683.2| DNA-directed RNA polymerases I and III subunit RPAC1 [Aspergillus
niger CBS 513.88]
gi|350634564|gb|EHA22926.1| hypothetical protein ASPNIDRAFT_206792 [Aspergillus niger ATCC
1015]
Length = 373
Score = 186 bits (471), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 122/317 (38%), Positives = 176/317 (55%), Gaps = 49/317 (15%)
Query: 62 GVDNSLQLDHFCNNFRVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLI 121
G + L F N+ +++ R + + F LIG+DA+IANAFRRIL+AE+P++AIE V +
Sbjct: 38 GESHEWSLAKFKNDLKIDFHRNERFESSFSLIGVDASIANAFRRILMAEVPSIAIEYVFV 97
Query: 122 ANNTSVIQDEVLAHRLGLIPI------IVDPRLFEYMSENDTSN----EKNTIVFKLHVL 171
NNTSVIQDEVLA RLGLIP+ I R F+ +++D + + NTIV +L V
Sbjct: 98 HNNTSVIQDEVLAQRLGLIPLKGSVEGINWMRWFKKPTDDDPNGSSPADYNTIVLRLDVE 157
Query: 172 CERGGPRLTVKTNELKWLPNGSELPLETKP-----DSNPSSKPRTYTSFSSSQDLLPEFS 226
C + PN P ET P +++ +K T+ +
Sbjct: 158 CTKN--------------PNAD--PEETDPRKLYKNAHVYAKDITFHPVGRQEQFFA--G 199
Query: 227 NNPIRPM-LDITIARLGPGQEIELEAHAVKGIGKTHAKWSPVATAWYRMLPEIVLLEDVE 285
++ I+P+ DI +A+L PGQ IE+E H +KGIG HAK+SPVATA YR+LP+I +L +
Sbjct: 200 DDAIQPVNPDILVAKLRPGQAIEMELHCIKGIGADHAKFSPVATATYRLLPDIKILRPII 259
Query: 286 DEDAEKLVKTCPVNVFDIEDIG--------------SGKKRATVAQPRACTLCRECLRCG 331
+DA+K K P V +E + G+ +A V P T+ RECLR
Sbjct: 260 GDDAKKFAKCFPSGVIGLEKVTREEAKQKDSGYEGHEGELKAVVVDPFKDTVSRECLR-H 318
Query: 332 EEWEKRVSIRRVKDHFI 348
EE++ +V + RV+DHFI
Sbjct: 319 EEFQGKVKLGRVRDHFI 335
>gi|67523919|ref|XP_660019.1| hypothetical protein AN2415.2 [Aspergillus nidulans FGSC A4]
gi|40745370|gb|EAA64526.1| hypothetical protein AN2415.2 [Aspergillus nidulans FGSC A4]
gi|259487823|tpe|CBF86802.1| TPA: DNA-directed RNA polymerase I and III subunit Rpc40, putative
(AFU_orthologue; AFUA_2G13720) [Aspergillus nidulans
FGSC A4]
Length = 373
Score = 186 bits (471), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 127/350 (36%), Positives = 184/350 (52%), Gaps = 48/350 (13%)
Query: 28 LPPHIEFQRTR-VQCNLDAPIHTENVMYSGAYASMGVDNSLQLDHFCNNFRVEVIRLTKD 86
+P H E +R R V N + + + + G + G + LD F + FRV+ + K
Sbjct: 5 VPSHEELERRRIVNVNAETVTNIASTDFPGHWP--GESHEWNLDKFRDGFRVDFHQNKKF 62
Query: 87 DMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRLGLIPIIVDP 146
+ F LIG+DA+IANAFRRI++AE+PT+AIE V I NNTSVIQDEVLA RLGLIP+
Sbjct: 63 EASFSLIGLDASIANAFRRIVMAEVPTLAIEWVYIHNNTSVIQDEVLAQRLGLIPLQGSV 122
Query: 147 RLFEYMSENDTSNEK-----------NTIVFKLHVLCERGGPRLTVKTNELKWLPNGSE- 194
+M + +E NT+V +L V C + PN S
Sbjct: 123 EGLNWMQWYNKGSEDEPGSGSDLADYNTVVLRLDVECTKN--------------PNASRD 168
Query: 195 --LPLETKPDSNPSSKPRTYTSFSSSQDLLP-EFSNNPIRPMLDITIARLGPGQEIELEA 251
P + +++ +K + ++ E + + P DI +A+L PGQ+IELE
Sbjct: 169 ETDPRKLYKNAHVYAKDIVFHPVGRQEEFFTGEGAIRAVNP--DILVAKLRPGQKIELEM 226
Query: 252 HAVKGIGKTHAKWSPVATAWYRMLPEIVLLEDVEDEDAEKLVKTCPVNVFDIEDIGS--- 308
H +KGIG HAK+SPVATA YR++P I +L + EDA+K K P V +E I +
Sbjct: 227 HCIKGIGADHAKFSPVATATYRLMPVIQILRPIIGEDAKKFAKCFPKGVIGLEPITAEDE 286
Query: 309 ----------GKKRATVAQPRACTLCRECLRCGEEWEKRVSIRRVKDHFI 348
G+ +A V T+ RECLR +E++ +V + R++DHFI
Sbjct: 287 RQNAEYRGRGGELKAVVRDAFNDTVSRECLRH-DEFKGKVKLGRIRDHFI 335
>gi|116180930|ref|XP_001220314.1| hypothetical protein CHGG_01093 [Chaetomium globosum CBS 148.51]
gi|88185390|gb|EAQ92858.1| hypothetical protein CHGG_01093 [Chaetomium globosum CBS 148.51]
Length = 374
Score = 185 bits (470), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 125/312 (40%), Positives = 172/312 (55%), Gaps = 38/312 (12%)
Query: 62 GVDNSLQLDHFCNNFRVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLI 121
G D+S ++ F FRVE + + F LIGIDA+IANAFRRI+IA++PT+AIE V I
Sbjct: 38 GEDHSWDIESFRRGFRVEFHQNDPYEASFSLIGIDASIANAFRRIMIADIPTLAIETVFI 97
Query: 122 ANNTSVIQDEVLAHRLGLIPIIVDPR-LFEYM---------SE-NDTSNEKNTIVFKLHV 170
NNTSVIQDEVL+HRLGLIP L +++ SE N++ + NT+ +L V
Sbjct: 98 NNNTSVIQDEVLSHRLGLIPFKGGHEGLHKFLKWWRKPTDESEINNSYYDNNTVSLRLEV 157
Query: 171 LCERGGPRLTVKTNELKWLPNGSELPLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPI 230
CE +T+ K N + + P + Y FS + + P NP
Sbjct: 158 QCEHNEKAAAGETDPTKLYKNAHVYARDI--EFCPVGRQDKY--FSGADAIAP---VNP- 209
Query: 231 RPMLDITIARLGPGQEIELEAHAVKGIGKTHAKWSPVATAWYRMLPEIVLLEDVEDEDAE 290
DI IA+L PGQEI L H KG+G H+K+SPVATA YR++P I + + +DAE
Sbjct: 210 ----DILIAKLRPGQEISLSMHMHKGVGSDHSKFSPVATASYRLMPVISIERPILGKDAE 265
Query: 291 KLVKTCPVNVFDIEDI--------GS------GKKRATVAQPRACTLCRECLRCGEEWEK 336
K ++ P V +E + GS G+ +A VA P T+ RECLR EE++
Sbjct: 266 KFMRCFPPGVIKLEKVTKKEAAKKGSGYEGHEGEDKAVVADPMRDTVSRECLRH-EEFKG 324
Query: 337 RVSIRRVKDHFI 348
+V + R +DHFI
Sbjct: 325 KVKLGRRRDHFI 336
>gi|409045867|gb|EKM55347.1| hypothetical protein PHACADRAFT_161317 [Phanerochaete carnosa
HHB-10118-sp]
Length = 364
Score = 185 bits (470), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 126/322 (39%), Positives = 177/322 (54%), Gaps = 58/322 (18%)
Query: 47 IHTENVM------YSGAYASMGVDNSLQLDHFCNNFRVEVIRLTKDDMEFDLIGIDAAIA 100
+H E V Y G Y + D+S ++ F EV RL++ +EFDL+G+DA+IA
Sbjct: 19 VHAERVSDVSCTEYPGHYPNE--DHSWDMEKFK-----EVQRLSQWSIEFDLVGVDASIA 71
Query: 101 NAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRLGLIPIIVDPRLFEYMSEND---T 157
NAFRRI+IAE+PT+AIE V + NNTSVI DEVLAHR+GL+ DP E + T
Sbjct: 72 NAFRRIMIAEVPTIAIEHVYVWNNTSVIHDEVLAHRIGLVQPSADPSTLEIRTPTGFGAT 131
Query: 158 SNEKNTIVFKLHVLCERGGPRLT--------VKTNELKWLPNGSELPLETKPDSNPSSKP 209
+++NT+VF+L V CER P+ + VK+ +L W+P G + +
Sbjct: 132 PSDRNTLVFRLQVTCER-APKGSGKEYINDEVKSGDLVWVPQGEQEEV------------ 178
Query: 210 RTYTSFSSSQDLLPEFSNNPIRPM-LDITIARLGPGQEIELEAHAVKGIGKTHAKWSPVA 268
F+NNP P DI +A+L PGQEI++E HA+KG+GK HAKWSPVA
Sbjct: 179 ---------------FANNPPGPTNKDIVLAKLRPGQEIDMELHAIKGVGKEHAKWSPVA 223
Query: 269 TAWYRMLPEIVL--LEDVEDEDAEKLVKTCPVNVFDIEDIGSGKKRATVAQPRACTLCRE 326
TA YR+ P I+L + V A+K V ++ G+ + R ++ RE
Sbjct: 224 TASYRLHPLILLNPQKPVPTHLAKKFAGCFSPGVVQVD--ADGEIWIDLHGMRKDSVSRE 281
Query: 327 CLRCGEEWEKRVSIRRVKDHFI 348
LR EE+ V ++RV+D FI
Sbjct: 282 VLRH-EEFHGCVELKRVRDWFI 302
>gi|444321150|ref|XP_004181231.1| hypothetical protein TBLA_0F01700 [Tetrapisispora blattae CBS 6284]
gi|387514275|emb|CCH61712.1| hypothetical protein TBLA_0F01700 [Tetrapisispora blattae CBS 6284]
Length = 333
Score = 185 bits (470), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 124/335 (37%), Positives = 175/335 (52%), Gaps = 62/335 (18%)
Query: 32 IEFQRTRVQCNLDAPIHTENVMYSGAYASMGVDNSLQLDHFCNNFRVEVIRLTKDDMEFD 91
IE+ R + D P Y+ G +N+ ++ F F +++ L + D FD
Sbjct: 7 IEYNRVTNTTSTDFP----------GYSKDG-ENAWDVEKFKETFDIKISNLDERDATFD 55
Query: 92 LIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRLGLIPIIVDPRLFEY 151
LI ID +IANAFRRI++AE+P +A E V NNTSVIQDEVLAHR+GL+P+ VDP + +
Sbjct: 56 LINIDTSIANAFRRIMMAEVPAVAAEHVYFLNNTSVIQDEVLAHRIGLVPLKVDPDMLTW 115
Query: 152 ----MSENDTSNEKNTIVFKLHVLCERG--------GPRLT-----VKTNELKWLPNGSE 194
+ E + ++NTIV L+V C + P++ V +LK+ P G +
Sbjct: 116 VDQTLPEEERFTDENTIVLSLNVKCTKNDKAPKDCTDPKILYNNAHVYARDLKFEPQGKQ 175
Query: 195 LPLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPM-LDITIARLGPGQEIELEAHA 253
+ET F+N P+ P DI +A+L PGQEI L AH
Sbjct: 176 --VET-------------------------FANCPVVPTDPDILLAKLRPGQEISLRAHC 208
Query: 254 VKGIGKTHAKWSPVATAWYRMLPEIVLLEDVEDEDAEKLVKTCPVNVFDIEDIGSGKKRA 313
+ GIG HAK+SPVATA YR+LP I + E + +DAEK K V I+D A
Sbjct: 209 ILGIGSDHAKFSPVATASYRLLPHINITEPIRGKDAEKFQKCFTPGVIGIKD-----GEA 263
Query: 314 TVAQPRACTLCRECLRCGEEWEKRVSIRRVKDHFI 348
V R T+ RE R +E+ +V + RV+DHF+
Sbjct: 264 YVKDARMDTVSREVFR-HQEFADKVKLGRVRDHFV 297
>gi|225562812|gb|EEH11091.1| DNA-directed RNA polymerase I and III polypeptide [Ajellomyces
capsulatus G186AR]
Length = 380
Score = 185 bits (470), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 122/339 (35%), Positives = 184/339 (54%), Gaps = 39/339 (11%)
Query: 35 QRTRVQCNLDAPIHTENVMYSGAYASMGVDNSLQLDHFCNNFRVEVIRLTKDDMEFDLIG 94
QR + N + + + + G + G ++ +D F N ++ + + F L+G
Sbjct: 13 QRKVIGINAETVTNISSTDFPGHWP--GENHEWSIDEFKRNLKITFHKNEPYEASFSLVG 70
Query: 95 IDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRLGLIPIIVDP------RL 148
+DAAIANAFRRI+IAE+P++AIE V I NNTSVIQDEVLAHRLGL+P+ R
Sbjct: 71 VDAAIANAFRRIMIAEIPSLAIETVYIHNNTSVIQDEVLAHRLGLVPLTGSSEGINWLRW 130
Query: 149 FEYMSEN--DTSNE---KNTIVFKLHVLCERGGPRLTVKTNELKWLPNGSELPLETKPDS 203
F +E D+ +E NT+V L+V C P+ + ++ + N + +
Sbjct: 131 FRQPTEGRPDSGSELADYNTVVLHLNVECT-NNPKASANEDDPQKRYNHAHV-YAKDITF 188
Query: 204 NPSSKPRTYTSFSSSQDLLPEFSNNPIRPMLDITIARLGPGQEIELEAHAVKGIGKTHAK 263
+P + TY F ++ S NP DI +A+L PGQ+I++E H VKGIG HAK
Sbjct: 189 HPVGRQETY--FQEPDGVIR--SANP-----DILLAKLRPGQKIDIEMHCVKGIGADHAK 239
Query: 264 WSPVATAWYRMLPEIVLLEDVEDEDAEKLVKTCPVNVFDIEDIGS--------------G 309
+SPVATA YR+LP+I ++ + DA K + P V I+ + + G
Sbjct: 240 FSPVATASYRLLPDIKIIRPILGNDALKFARCFPKGVIGIDSVSAEEASRPGSGYEGHEG 299
Query: 310 KKRATVAQPRACTLCRECLRCGEEWEKRVSIRRVKDHFI 348
+K+A V P T+ RECLR +E++ +V + R++DHFI
Sbjct: 300 EKKAVVVDPFKDTMSRECLRH-DEFQGKVKLGRIRDHFI 337
>gi|358365562|dbj|GAA82184.1| DNA-directed RNA polymerases I and III 40 kDa polypeptide
[Aspergillus kawachii IFO 4308]
Length = 373
Score = 185 bits (469), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 126/350 (36%), Positives = 189/350 (54%), Gaps = 48/350 (13%)
Query: 28 LPPHIEFQRTR-VQCNLDAPIHTENVMYSGAYASMGVDNSLQLDHFCNNFRVEVIRLTKD 86
+P E R R V N + + + + G + G + L+ F N+ +++ R +
Sbjct: 5 VPSQEELDRRRIVDINPETVSNIPSTDFPGHWP--GESHEWSLEKFKNDLKIDFHRNERF 62
Query: 87 DMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRLGLIPI---- 142
+ F LIG+DA+IANAFRRIL+AE+P++AIE V + NNTSVIQDEVLA RLGLIP+
Sbjct: 63 EASFSLIGVDASIANAFRRILMAEVPSIAIEYVFVHNNTSVIQDEVLAQRLGLIPLKGSV 122
Query: 143 --IVDPRLFEYMSENDTSN----EKNTIVFKLHVLCERGGPRLTVKTNELKWLPNGS--- 193
I R F+ +++D + + NTIV +L V C + PN
Sbjct: 123 EGINWMRWFKKPTDDDPNGSNPADYNTIVLRLDVECTKN--------------PNADPEE 168
Query: 194 ELPLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPM-LDITIARLGPGQEIELEAH 252
+ P + +++ +K T+ + ++ I+P+ DI +A+L PGQ IE+E H
Sbjct: 169 DDPRKLYKNAHVYAKDITFHPVGRQEQFFA--GDDAIQPVNPDILVAKLRPGQSIEMELH 226
Query: 253 AVKGIGKTHAKWSPVATAWYRMLPEIVLLEDVEDEDAEKLVKTCPVNVFDIEDIG----- 307
+KGIG HAK+SPVATA YR+LP+I +L + +DA+K K P V +E +
Sbjct: 227 CIKGIGADHAKFSPVATATYRLLPDIKILRPIIGDDAKKFAKCFPSGVIGLEKVTREEAK 286
Query: 308 ---------SGKKRATVAQPRACTLCRECLRCGEEWEKRVSIRRVKDHFI 348
G+ +A V P T+ RECLR EE++ +V + RV+DHFI
Sbjct: 287 QKDSGYEGHEGELKAVVVDPFKDTVSRECLR-HEEFQGKVKLGRVRDHFI 335
>gi|385302721|gb|EIF46838.1| dna-directed rna polymerases i and iii 40 kda polypeptide [Dekkera
bruxellensis AWRI1499]
Length = 340
Score = 185 bits (469), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 122/297 (41%), Positives = 166/297 (55%), Gaps = 25/297 (8%)
Query: 57 AYASMGVDNSLQLDHFCNNFRVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAI 116
AY S + + L+ F F++ + +T+ FDLIG+D +IANAFRRI+I+E+P++AI
Sbjct: 26 AY-SKDIGEAWDLEAFKKKFQLNISYITERTANFDLIGLDTSIANAFRRIMISEVPSVAI 84
Query: 117 EKVLIANNTSVIQDEVLAHRLGLIPIIVDPRLFEYMSENDTSNEK----NTIVFKLHVLC 172
E V + NNTSVIQDEVLAHRLGL+P+ VDP L ++ N EK NTIV L+V C
Sbjct: 85 EFVYMFNNTSVIQDEVLAHRLGLVPLKVDPDLLSWVDPNAEEKEKFTDENTIVLSLNVSC 144
Query: 173 ERGGPRLTVKTNELKWLPNGSELPLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRP 232
R N +K G P +SN +K F + F ++P+ P
Sbjct: 145 TRN-------PNAVK----GDNRPENLYKNSNVYAKD---LKFEPQGRQVETFKDHPVVP 190
Query: 233 M-LDITIARLGPGQEIELEAHAVKGIGKTHAKWSPVATAWYRMLPEIVLLEDVEDEDAEK 291
+I +A+L PGQEI L AH V GI HAK+SPVAT YR+LP I + E + +DA +
Sbjct: 191 CDPNILLAKLRPGQEISLRAHCVLGIXADHAKFSPVATXSYRLLPLIDIKEPITGKDALE 250
Query: 292 LVKTCPVNVFDIEDIGSGKKRATVAQPRACTLCRECLRCGEEWEKRVSIRRVKDHFI 348
P V I D G A V R T+ RE LR E++ +V + R++DHFI
Sbjct: 251 FQDCFPSGVIGINDKG----EAYVKDARKDTVSREVLR-HEKFNGKVKLGRIRDHFI 302
>gi|125984360|ref|XP_001355944.1| GA17664 [Drosophila pseudoobscura pseudoobscura]
gi|54644262|gb|EAL33003.1| GA17664 [Drosophila pseudoobscura pseudoobscura]
Length = 333
Score = 185 bits (469), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 112/300 (37%), Positives = 164/300 (54%), Gaps = 46/300 (15%)
Query: 64 DNSLQLDHFCNNFRVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIAN 123
D+ ++ F +V ++R +D +EFD+IG+ AIANAFRR++++E+P+MAIEKV I N
Sbjct: 29 DDVFNMEVFKKKLQVAIVRNDEDGLEFDMIGVYPAIANAFRRLMLSEVPSMAIEKVYIYN 88
Query: 124 NTSVIQDEVLAHRLGLIPIIVDPRLFEYMSE--NDTSNEKNTIVFKLHVLCERGG----- 176
NTS+IQDEVLAHR+GL+P+ DPRLF Y +E + E++T+ ++L V C R
Sbjct: 89 NTSIIQDEVLAHRMGLLPLKADPRLFAYRTEESGEAGTEQDTLEYELKVKCTRRKDASKD 148
Query: 177 --------PRLTVKTNELKWLPNGSELPLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNN 228
V + LKWLP G + + ++ N +
Sbjct: 149 QSNFDDIYKNHKVYSGHLKWLPKGKQAQIYSESMVNCIHE-------------------- 188
Query: 229 PIRPMLDITIARLGPGQEIELEAHAVKGIGKTHAKWSPVATAWYRMLPEIVLLEDVEDED 288
DI IA+L PG E++L AVKG+GK HAK+SPVATA+YR+LP+I L +V +D
Sbjct: 189 ------DILIAQLRPGHELDLRLVAVKGLGKDHAKFSPVATAYYRLLPQIKLNREVYGKD 242
Query: 289 AEKLVKTCPVNVFDIEDIGSGKKRATVAQPRACTLCRECLRCGEEWEKRVSIRRVKDHFI 348
A L V I++ + A V R + R R + E V++ RV+DH+I
Sbjct: 243 AYLLQSCFSPGVIGIDE----NECAYVKDARYDSCSRNVYRY-PQLEDSVTLGRVRDHYI 297
>gi|307181041|gb|EFN68815.1| DNA-directed RNA polymerases I and III subunit RPAC1 [Camponotus
floridanus]
Length = 344
Score = 185 bits (469), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 116/299 (38%), Positives = 168/299 (56%), Gaps = 21/299 (7%)
Query: 58 YASMGVDNSLQLDHFCNNFRVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIE 117
YA + L ++ R+E++R ++EFD+IG D ++ NAFRRILI+E+P+MAI+
Sbjct: 21 YARETSSKATALKNYIQELRIEIVREEDKELEFDIIGCDISLVNAFRRILISEVPSMAID 80
Query: 118 KVLIANNTSVIQDEVLAHRLGLIPIIVDPRLFEY---MSENDTSNEKNTIVFKLHVLCER 174
KV I NNTS++QDEVLAHRLGLIP+ DPRLFEY +++ +E++T+ ++L V C
Sbjct: 81 KVFIINNTSLLQDEVLAHRLGLIPLRADPRLFEYPPSGRKDEEVSEQDTLKYELKVTC-- 138
Query: 175 GGPRLTVKTNELKWLPNGSELPLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPML 234
P S LP + +S SK + D+ P +
Sbjct: 139 ---------TTHPQAPKYSRLPEDMYRNSKVYSKDIKWVPIGRQGDMFPHGTEQFSVLEN 189
Query: 235 DITIARLGPGQEIELEAHAVKGIGKTHAKWSPVATAWYRMLPEIVLLEDVEDEDAEKLVK 294
DI I ++ PG EI HAVKGIGK HAK+SPVA A YR++P I L + V +EDA+ L++
Sbjct: 190 DILICKMRPGHEIHAFMHAVKGIGKDHAKFSPVAPARYRLMPAIELTKPVRNEDAD-LLQ 248
Query: 295 TC--PVNVFDIE-DIGSGKK--RATVAQPRACTLCRECLRCGEEWEKRVSIRRVKDHFI 348
+C P + +E + SG+K A V R + R R E+ + V + R+ DH I
Sbjct: 249 SCFSPAVIEVVEKETSSGEKYREARVKNARYDSCARNVYRY-EQLKDCVKMTRISDHVI 306
>gi|402469296|gb|EJW04273.1| hypothetical protein EDEG_01455 [Edhazardia aedis USNM 41457]
Length = 313
Score = 185 bits (469), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 115/299 (38%), Positives = 169/299 (56%), Gaps = 40/299 (13%)
Query: 64 DNSLQLDHFCNNFRVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIAN 123
+ S +D + + +E+I T + +EFDL +D +IANA RRILIAELPTMAIE V
Sbjct: 15 NESSNMDEYLDKIELEIINHTSNSLEFDLKNVDCSIANALRRILIAELPTMAIEYVNFYK 74
Query: 124 NTSVIQDEVLAHRLGLIPIIVDPRLFEYMSENDTSNEKNTIVFKLHVLCERGGPR--LTV 181
VI +E+LAHRLGL+PI++DP++FEY + DT NEKN + F VL ++ + V
Sbjct: 75 YNGVIPEEILAHRLGLLPILIDPKVFEYKNSTDTENEKNALKF---VLKKQNNMNDIVVV 131
Query: 182 KTNELKWLPNGSELPLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPMLD--ITIA 239
++++KW+P G++ L+P RP + I I
Sbjct: 132 TSDDIKWVPLGNQ-----------------------KDTLVP-------RPRIKSGIPIT 161
Query: 240 RLGPGQEIELEAHAVKGIGKTHAKWSPVATAWYRMLPEIVLLEDVEDEDAEKLVKTCPVN 299
++ GQEIE+E +A+KGIGK HAKWSPV YR+ P I ++D+ DEDA KL K
Sbjct: 162 KICNGQEIEIEMYAIKGIGKDHAKWSPVCPVSYRLHPAIE-IKDIYDEDAFKLQKCFSSG 220
Query: 300 VFDIEDI-GSGKKRATVAQPRACTLCRECLRCGEEWEKRVSIRRVKDHFICKYVMLIIN 357
V D+ + + +A V+ R T+ RE LR E++ +V I ++ +HFI K + I+
Sbjct: 221 VIDVSRCPETNRMKAFVSNQRLDTMSREALR-HPEFDGKVFISKIPNHFIFKIQTIYID 278
>gi|115384348|ref|XP_001208721.1| DNA-directed RNA polymerases I and III 40 kDa polypeptide
[Aspergillus terreus NIH2624]
gi|114196413|gb|EAU38113.1| DNA-directed RNA polymerases I and III 40 kDa polypeptide
[Aspergillus terreus NIH2624]
Length = 374
Score = 185 bits (469), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 131/351 (37%), Positives = 190/351 (54%), Gaps = 49/351 (13%)
Query: 28 LPPHIEFQRTR-VQCNLDAPIHTENVMYSGAYASMGVDNSLQLDHFCNNFRVEVIRLTKD 86
+P E R R V N + + + + G + G + LD F N+F+VE R
Sbjct: 5 IPTQAELDRRRLVSINPETVSNIPSTDFPGHWP--GESHEWSLDKFRNDFKVEFHRNAPF 62
Query: 87 DMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRLGLIPI---- 142
+ F L+G+DAAIANAFRRIL+AE+PT+AIE V + NNTSVIQDEVLA RLGLIP+
Sbjct: 63 EASFSLVGLDAAIANAFRRILMAEVPTLAIEYVFVHNNTSVIQDEVLAQRLGLIPLKGSV 122
Query: 143 --IVDPRLFEYMSEND-----TSNEKNTIVFKLHVLCERGGPRLTVKTNELKWLPNGS-- 193
I R F+ +++D T ++ NTIV +L V C + PN +
Sbjct: 123 EGINWMRWFKKPTDDDPESGSTPSDYNTIVLRLDVECTKN--------------PNAAKD 168
Query: 194 -ELPLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPM-LDITIARLGPGQEIELEA 251
+ P + +++ +K T+ + ++ I+P+ DI IA+L PGQ+I +E
Sbjct: 169 EDDPRKLYRNAHVYAKDITFHPVGRQEQFFT--GDDAIQPVNPDILIAKLRPGQKISMEL 226
Query: 252 HAVKGIGKTHAKWSPVATAWYRMLPEIVLLEDVEDEDAEKLVKTCPVNVFDIEDI----- 306
H +KGIG HAK+SPV TA YR+LP+I + + +DA+K K P V +E +
Sbjct: 227 HCIKGIGADHAKFSPVCTASYRLLPDIKIERPIIGDDAKKFAKCFPRGVIGLEPVTREEA 286
Query: 307 ---GSGKK------RATVAQPRACTLCRECLRCGEEWEKRVSIRRVKDHFI 348
GSG + +A V T+ RECLR EE++ +V + RV+DHFI
Sbjct: 287 AKKGSGYEGHEGEMKAVVRDAFNDTVSRECLR-HEEFQGKVKLGRVRDHFI 336
>gi|353241596|emb|CCA73401.1| probable Rpc40-40 kD subunit of DNA-directed RNA polymerases I and
III [Piriformospora indica DSM 11827]
Length = 382
Score = 185 bits (469), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 127/325 (39%), Positives = 174/325 (53%), Gaps = 59/325 (18%)
Query: 54 YSGAYASMGVDNSLQLDHFCNNFRVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPT 113
Y G Y DNS L F + ++E + ++ +EFDL+GID +IANAFRRI+I+E+PT
Sbjct: 29 YPGVYPDE--DNSWDLVDFKKHVKLEFQYVEEERIEFDLVGIDTSIANAFRRIIISEVPT 86
Query: 114 MAIEKVLIANNTSVIQDEVLAHRLGLIPIIVDPRLFEYMSEN--DTSNEKNTIVFKLHVL 171
+AIE+V + +NTSVIQDEVL+HRLGLIP+ +DPR+ E +N D S ++NT+VF L V
Sbjct: 87 VAIERVYVYDNTSVIQDEVLSHRLGLIPLRIDPRMLEDAPQNYQDDSTDRNTMVFSLDVT 146
Query: 172 C-ERGGPR------------LTVKTNELKWLPNGSELPLETKPDSNPSSKPRTYTSFSSS 218
C +R G R +V +L+W+P G + ET S+P PR
Sbjct: 147 CADRDGVRPGTTDPEKLYINSSVYAKDLQWVPQGEQ---ETIFASDP---PR-------- 192
Query: 219 QDLLPEFSNNPIRPMLDITIARLGPGQEIELEAHAVKGIGKTHAKWSPVATAWYRMLPEI 278
+ NP +I IA+L P Q I LE HAVK IG+ H K+SPV TA+YR++P I
Sbjct: 193 -------AANP-----NILIAKLRPEQSIHLEMHAVKSIGRDHTKFSPVGTAFYRLMPHI 240
Query: 279 VLLE-----DVEDEDAEKLVKTCPVNVFDIEDIGS----------GKKRATVAQPRACTL 323
LL+ D E +KL +D S GK V PR +
Sbjct: 241 QLLKPGDRYDEESRKVDKLEMADQEQAKRFQDAFSEGVIEVKKERGKYYVRVKAPRRDNV 300
Query: 324 CRECLRCGEEWEKRVSIRRVKDHFI 348
R L E++ V + RV+D FI
Sbjct: 301 TRRILEL-REFDGMVRLGRVRDWFI 324
>gi|336263008|ref|XP_003346286.1| hypothetical protein SMAC_05823 [Sordaria macrospora k-hell]
gi|380093615|emb|CCC08579.1| unnamed protein product [Sordaria macrospora k-hell]
Length = 378
Score = 184 bits (468), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 121/333 (36%), Positives = 175/333 (52%), Gaps = 35/333 (10%)
Query: 35 QRTRVQCNLDAPIHTENVMYSGAYASMGVDNSLQLDHFCNNFRVEVIRLTKDDMEFDLIG 94
+R V N + + + + G Y G D+S ++ F N RV + + +F LIG
Sbjct: 24 KRNTVHINAETVTNVTSTDFPGFYP--GEDHSWDIEKFRENVRVVFHQNDPYEAQFSLIG 81
Query: 95 IDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRLGLIPIIVDPR----LFE 150
+DA+IANAFRRI+IA++PT+AIE + + NNTSVIQDEVL HRLGLIP +
Sbjct: 82 VDASIANAFRRIMIADIPTLAIEDIFMWNNTSVIQDEVLGHRLGLIPFTGGKEGLHNFLK 141
Query: 151 YMSENDTSNEKNTIVFKLHVLCERGGPRLTVKTNELKWLPNGSELPLETKPDSNPSSKPR 210
+ + +T + NT+ +L V CE + P S+ P E +++ +K
Sbjct: 142 WYKKGETPCDYNTVELELKVKCENN-----------QNAPTDSKDPKELYHNAHVYAKDI 190
Query: 211 TYTSFSSSQDLLPEFSNNPIRPML-DITIARLGPGQEIELEAHAVKGIGKTHAKWSPVAT 269
+ N IRP DI +A++ PGQEI+L H KG+G HAK+SPVAT
Sbjct: 191 KFVPKGRQAKYFS--GENVIRPTNPDILVAKMRPGQEIDLTMHMHKGVGSDHAKFSPVAT 248
Query: 270 AWYRMLPEIVLLEDVEDEDAEKLVKTCPVNVFDIEDI--------GSGKK------RATV 315
A YR++P I +LE + DAEK K P V +E + GSG + +A V
Sbjct: 249 ASYRLMPTITILEPILGRDAEKFQKCFPKGVIGLEKVTKEEAKQKGSGYEGHEGELKAVV 308
Query: 316 AQPRACTLCRECLRCGEEWEKRVSIRRVKDHFI 348
T+ RECLR +E++ +V + R +DHFI
Sbjct: 309 LDAMRDTVSRECLRH-DEFKDKVKLGRRRDHFI 340
>gi|195437356|ref|XP_002066606.1| GK24584 [Drosophila willistoni]
gi|194162691|gb|EDW77592.1| GK24584 [Drosophila willistoni]
Length = 332
Score = 184 bits (467), Expect = 5e-44, Method: Compositional matrix adjust.
Identities = 116/300 (38%), Positives = 162/300 (54%), Gaps = 46/300 (15%)
Query: 64 DNSLQLDHFCNNFRVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIAN 123
D +D F +V ++R ++ +EFDLIG+ AIANAFRR++++E+P+MAIEKV I N
Sbjct: 28 DEVFNIDIFKQKLKVTIVRNDEEGLEFDLIGVYPAIANAFRRLMLSEVPSMAIEKVYIYN 87
Query: 124 NTSVIQDEVLAHRLGLIPIIVDPRLFEYMSENDTSN--EKNTIVFKLHVLCERGG----- 176
NTS+IQDEVLAHR+GL+P+ DPRLF Y +E N E++T+ ++L V C R
Sbjct: 88 NTSIIQDEVLAHRMGLLPLKADPRLFTYRTEESPENGTEQDTLEYELKVKCTRRKDASKD 147
Query: 177 --------PRLTVKTNELKWLPNGSELPLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNN 228
V + LKWLP G + + T+ SS + E
Sbjct: 148 QSTFDEIYKNHKVFSGHLKWLPKGKQGQIYTE----------------SSVGCIHE---- 187
Query: 229 PIRPMLDITIARLGPGQEIELEAHAVKGIGKTHAKWSPVATAWYRMLPEIVLLEDVEDED 288
DI IA+L PG E++L AVKG+GK HAK+SPVATA+YR+LP I L +V +D
Sbjct: 188 ------DILIAQLRPGHEMDLRLIAVKGLGKDHAKFSPVATAYYRLLPLIKLNREVSGKD 241
Query: 289 AEKLVKTCPVNVFDIEDIGSGKKRATVAQPRACTLCRECLRCGEEWEKRVSIRRVKDHFI 348
A L V I++ + A V R + R R V++ RV+DH+I
Sbjct: 242 AYLLQSCFSPGVIGIDE----NENAYVKDARYDSGSRNVYRYS-HLADAVTLARVRDHYI 296
>gi|345492750|ref|XP_003426918.1| PREDICTED: DNA-directed RNA polymerases I and III subunit
RPAC1-like [Nasonia vitripennis]
Length = 345
Score = 184 bits (466), Expect = 7e-44, Method: Compositional matrix adjust.
Identities = 112/289 (38%), Positives = 165/289 (57%), Gaps = 25/289 (8%)
Query: 69 LDHFCNNFRVEVIRLTKD--DMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTS 126
+D F F+++++ +++ ++EFD+IG AA+ANA+RRI+++E+P+MAIEKV + NNTS
Sbjct: 36 IDKFKKAFQIKIVSESENKCELEFDIIGCSAALANAYRRIMLSEVPSMAIEKVYMINNTS 95
Query: 127 VIQDEVLAHRLGLIPIIVDPRLFEYMSENDTSNE----KNTIVFKLHVLCERGGPRLTVK 182
+IQDEVLAHRLGL+P+ DPRLFEY S+ E ++T+ +++ +C
Sbjct: 96 LIQDEVLAHRLGLLPLKADPRLFEYPSKTTADEEEVSDQDTLRYEIKAIC---------- 145
Query: 183 TNELKWLPNG---SELPLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPMLDITIA 239
KW P+ S P + +N SK + +L P+ DI I
Sbjct: 146 ----KWNPHAPKDSRRPDDIYCGNNVYSKDIKWNPIGRQNELYPDGEKQFGMIADDILIC 201
Query: 240 RLGPGQEIELEAHAVKGIGKTHAKWSPVATAWYRMLPEIVLLEDVEDEDAEKLVKTCPVN 299
++ P QEI HAVKGIGK HAK+SPVATA YR+LPEI +++ V E AE+
Sbjct: 202 KMRPNQEIHAYMHAVKGIGKDHAKFSPVATATYRLLPEIQIIKPVRGEAAERFKSCFSPG 261
Query: 300 VFDIEDIGSGKKRATVAQPRACTLCRECLRCGEEWEKRVSIRRVKDHFI 348
V +I + GK+ A V R + R R ++ + V + RV DHFI
Sbjct: 262 VIEIVETTKGKE-ARVKNARYDSCSRNVFR-HDDLKDCVQLGRVPDHFI 308
>gi|452001561|gb|EMD94020.1| hypothetical protein COCHEDRAFT_1222623 [Cochliobolus
heterostrophus C5]
Length = 376
Score = 184 bits (466), Expect = 7e-44, Method: Compositional matrix adjust.
Identities = 120/348 (34%), Positives = 177/348 (50%), Gaps = 48/348 (13%)
Query: 34 FQRTRVQCNLDAPIHTENVMYSGAYASMGVDNSLQLDHFCNNFRVEVIRLTKDDMEFDLI 93
+R +Q + ++ ++ + G + G ++ LD+F NF V + D +F L
Sbjct: 10 MRRKTLQVGPETVMNQQSTDFPGHWP--GENHEWDLDYFKENFNVTFHSHSPFDTQFSLT 67
Query: 94 GIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRLGLIPIIVDPRLFEYMS 153
GID ++ANAFRRIL++E+PT+AIE V I NTS+IQDEVLAHRLGL+P+ D M
Sbjct: 68 GIDTSVANAFRRILLSEIPTLAIEDVFIYQNTSIIQDEVLAHRLGLVPLCGDREGLRAMK 127
Query: 154 ----------ENDTSNEKNTIVFKLHVLCERGGPRLTVKTNELKWLPNGSELPL--ETKP 201
E+ T + NT+V +L V C KW G + + ET P
Sbjct: 128 WYSKPTEEDPESGTPTDWNTVVLRLEVEC--------------KWQEGGLQRAVAGETDP 173
Query: 202 DS-----NPSSKPRTYTSFSSSQDLLPEFSNNPIRPM-LDITIARLGPGQEIELEAHAVK 255
D N +K + +L IR DI IA++ PGQ I L HA+K
Sbjct: 174 DKLYVGHNVYAKDIEFKPIGRQAELFSSEQGKEIRSTNPDILIAKMRPGQSINLSMHAIK 233
Query: 256 GIGKTHAKWSPVATAWYRMLPEIVLLEDVEDEDAEKLVKTCPVNVFDIEDI--------- 306
GIG+ HAK+SPVATA YR++P I + + + DA+K + P V ++ +
Sbjct: 234 GIGQDHAKFSPVATASYRLMPTIDITKPIVGPDAKKFARCFPRGVIRLDTVTETDVKQHP 293
Query: 307 ----GSGKKRATVAQPRACTLCRECLRCGEEWEKRVSIRRVKDHFICK 350
G+ +A VA T+ RECLR E++ +V + R++DHFI +
Sbjct: 294 ELEGKEGEAKAVVANAMNDTVSRECLRH-PEFKDKVRLGRIRDHFIFR 340
>gi|303323289|ref|XP_003071636.1| DNA-directed RNA polymerase, putative [Coccidioides posadasii C735
delta SOWgp]
gi|240111338|gb|EER29491.1| DNA-directed RNA polymerase, putative [Coccidioides posadasii C735
delta SOWgp]
gi|320035278|gb|EFW17220.1| RNA polymerase [Coccidioides posadasii str. Silveira]
Length = 382
Score = 184 bits (466), Expect = 8e-44, Method: Compositional matrix adjust.
Identities = 126/339 (37%), Positives = 178/339 (52%), Gaps = 39/339 (11%)
Query: 35 QRTRVQCNLDAPIHTENVMYSGAYASMGVDNSLQLDHFCNNFRVEVIRLTKDDMEFDLIG 94
+R + N + H + G + G D+S ++ F NF+V + + F LIG
Sbjct: 13 KRKIIGINPETVTHISATDFPGHWP--GEDHSWSVNKFKENFQVTFHKNDSFEATFSLIG 70
Query: 95 IDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRLGLIPIIVDPRLFEYMS- 153
+DAA+ANAFRRILIAE+P++AIE V I NNTSV+ DEVL+HRLGL+P+ +MS
Sbjct: 71 VDAAVANAFRRILIAEIPSLAIEFVFIHNNTSVLHDEVLSHRLGLVPLKGSLEGINWMSW 130
Query: 154 -------ENDT---SNEKNTIVFKLHVLCERGGPRLTVKTNELKWLPNGSELPLETKPDS 203
E D+ +++ NTIV KL+V C + + + K N D
Sbjct: 131 FRMPKEGEPDSGSPASDSNTIVLKLNVECTKNQNARPDEDDPTKLYNNAHVY----AKDI 186
Query: 204 NPSSKPRTYTSFSSSQDLLPEFSNNPIRPMLDITIARLGPGQEIELEAHAVKGIGKTHAK 263
R FS ++ P P DI +A+L PGQ+I++E H +KGIG+ HAK
Sbjct: 187 VFEPVGRQAAIFSGPHGVI-----QPAYP--DILLAKLRPGQKIDIEMHCIKGIGQDHAK 239
Query: 264 WSPVATAWYRMLPEIVLLEDVEDEDAEKLVKTCPVNVFDIEDI--------GS------G 309
+SPVATA YR+LP+I + + DA P V IE + GS G
Sbjct: 240 FSPVATASYRLLPDIQITRPILGNDAVNFANCFPKGVIGIEQVTAEDAAQAGSGYEGQEG 299
Query: 310 KKRATVAQPRACTLCRECLRCGEEWEKRVSIRRVKDHFI 348
+K+A V P T+ RECLR EE++ +V + RV+DHFI
Sbjct: 300 EKKAVVVDPFKDTVSRECLRH-EEFKGKVKLGRVRDHFI 337
>gi|451849744|gb|EMD63047.1| hypothetical protein COCSADRAFT_92552 [Cochliobolus sativus ND90Pr]
Length = 376
Score = 184 bits (466), Expect = 8e-44, Method: Compositional matrix adjust.
Identities = 120/348 (34%), Positives = 177/348 (50%), Gaps = 48/348 (13%)
Query: 34 FQRTRVQCNLDAPIHTENVMYSGAYASMGVDNSLQLDHFCNNFRVEVIRLTKDDMEFDLI 93
+R +Q + ++ ++ + G + G D+ L++F NF V + D +F L
Sbjct: 10 MRRKTLQVGPETVMNQQSTDFPGHWP--GEDHVWDLEYFKENFNVTFHSHSPFDTQFSLT 67
Query: 94 GIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRLGLIPIIVDPRLFEYMS 153
GID ++ANAFRRIL++E+PT+AIE V I NTS+IQDEVLAHRLGL+P+ D M
Sbjct: 68 GIDTSVANAFRRILLSEIPTLAIEDVFIYQNTSIIQDEVLAHRLGLVPLCGDREGLRAMK 127
Query: 154 ----------ENDTSNEKNTIVFKLHVLCERGGPRLTVKTNELKWLPNGSELPL--ETKP 201
E+ T + NT+V +L V C KW G + + ET P
Sbjct: 128 WYSKPTEEDPESGTPTDWNTVVLRLEVEC--------------KWQEGGLQRAVAGETDP 173
Query: 202 DS-----NPSSKPRTYTSFSSSQDLLPEFSNNPIRPM-LDITIARLGPGQEIELEAHAVK 255
D N +K + +L IR DI IA++ PGQ I L HA+K
Sbjct: 174 DKLYVGHNVYAKDIEFKPIGRQAELFSSEQGKEIRSTNPDILIAKMRPGQSINLSMHAIK 233
Query: 256 GIGKTHAKWSPVATAWYRMLPEIVLLEDVEDEDAEKLVKTCPVNVFDIEDI--------- 306
GIG+ HAK+SPVATA YR++P I + + + DA+K + P V ++ +
Sbjct: 234 GIGQDHAKFSPVATASYRLMPTIDITKPIVGPDAKKFARCFPRGVIRLDTVTETDVKQHP 293
Query: 307 ----GSGKKRATVAQPRACTLCRECLRCGEEWEKRVSIRRVKDHFICK 350
G+ +A VA T+ RECLR E++ +V + R++DHFI +
Sbjct: 294 ELEGKEGEAKAVVANAMNDTVSRECLRH-PEFKDKVRLGRIRDHFIFR 340
>gi|396471375|ref|XP_003838857.1| similar to DNA-directed RNA polymerases I and III subunit RPAC1
[Leptosphaeria maculans JN3]
gi|312215426|emb|CBX95378.1| similar to DNA-directed RNA polymerases I and III subunit RPAC1
[Leptosphaeria maculans JN3]
Length = 374
Score = 183 bits (465), Expect = 9e-44, Method: Compositional matrix adjust.
Identities = 126/350 (36%), Positives = 177/350 (50%), Gaps = 56/350 (16%)
Query: 35 QRTRVQCNLDAPIHTENVMYSGAYASMGVDNSLQLDHFCNNFRVEVIRLTKDDMEFDLIG 94
QR +Q + + ++ + G + G DN L+HF NF+V+ D F L+
Sbjct: 11 QRKLLQVGTETVANQQSTDFPGHWP--GEDNEWDLEHFKENFKVQFHSHKPYDTSFSLVS 68
Query: 95 IDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRLGLIPIIVDPRLFEYMS- 153
ID ++ANA RRILIAE+P++AIE V I NTS+IQDEVLAHRLGLIP+ +M
Sbjct: 69 IDTSVANAIRRILIAEIPSLAIEDVFIYQNTSIIQDEVLAHRLGLIPLCGSCDGLRWMKW 128
Query: 154 ---------ENDTSNEKNTIVFKLHVLCERGGPRLTVKTNELKWLPNGSELPL--ETKPD 202
+ T ++ NTIV +L+ CE W G + + ET PD
Sbjct: 129 FHKATGLEDGSGTQSDYNTIVLRLNKKCE--------------WQDGGLQRAVAGETDPD 174
Query: 203 S-----NPSSKPRTYTSFSSSQDLLPEF----SNNPIRPMLDITIARLGPGQEIELEAHA 253
N ++ + + P S NP DI IA++ PGQEI L HA
Sbjct: 175 KLYINHNVYARDMIWEPIGRQAQMFPPGAEIRSTNP-----DILIAKMRPGQEIALSMHA 229
Query: 254 VKGIGKTHAKWSPVATAWYRMLPEIVLLEDVEDEDAEKLVKTCPVNVFDIEDIG------ 307
KGIG+ HAK+SPVATA YR+LP I + E + DA+K + P V ++ +
Sbjct: 230 HKGIGQDHAKFSPVATASYRLLPTIDITEPITGPDAKKFARCFPRGVIRLDTVTAAHIAQ 289
Query: 308 ----SGKKR---ATVAQPRACTLCRECLRCGEEWEKRVSIRRVKDHFICK 350
+GK+ A V P T+ RECLR E++ +V + RV+DHFI +
Sbjct: 290 DPRLAGKQDESLAVVEDPMNDTVSRECLR-HPEFKDKVKLGRVRDHFIFR 338
>gi|195035209|ref|XP_001989070.1| GH11517 [Drosophila grimshawi]
gi|193905070|gb|EDW03937.1| GH11517 [Drosophila grimshawi]
Length = 333
Score = 183 bits (465), Expect = 9e-44, Method: Compositional matrix adjust.
Identities = 118/301 (39%), Positives = 165/301 (54%), Gaps = 47/301 (15%)
Query: 64 DNSLQLDHFCNNFRVEVIRLTKDD-MEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIA 122
D ++ F N +V ++R +++ +EFDLIG+ AIANAFRR++++E+P+MAIEKV I
Sbjct: 28 DEVFNMEVFKNKLQVVIVRNDEENGLEFDLIGVYPAIANAFRRLMLSEVPSMAIEKVYIY 87
Query: 123 NNTSVIQDEVLAHRLGLIPIIVDPRLFEYMSENDT--SNEKNTIVFKLHVLCERGGPRLT 180
NNTS+IQDEVLAHR+GL+P+ DPRLF Y SE T +E++T+ ++L V C R
Sbjct: 88 NNTSIIQDEVLAHRMGLLPLRADPRLFAYRSEESTEQGSEQDTLEYELKVKCTRRKDATK 147
Query: 181 VKTN-------------ELKWLPNGSELPLETKPDSNPSSKPRTYTSFSSSQDLLPEFSN 227
++N LKWLP G + + E S
Sbjct: 148 EQSNFDDIYKNHKVYSGHLKWLPKGKQ------------------------GQIYSESSV 183
Query: 228 NPIRPMLDITIARLGPGQEIELEAHAVKGIGKTHAKWSPVATAWYRMLPEIVLLEDVEDE 287
N I DI IA+L PG E++L AVKGIGK HAK+SPVATA+YR+LP+I L +V +
Sbjct: 184 NCIHD--DILIAQLRPGHELDLRLIAVKGIGKDHAKFSPVATAFYRLLPQITLTREVSGK 241
Query: 288 DAEKLVKTCPVNVFDIEDIGSGKKRATVAQPRACTLCRECLRCGEEWEKRVSIRRVKDHF 347
DA L V I++ + A V R + R R + V + RV+DH+
Sbjct: 242 DAYLLQNCFSPGVIGIDE----NECAYVKDARYDSCSRNVYRY-PQLADAVIMARVRDHY 296
Query: 348 I 348
I
Sbjct: 297 I 297
>gi|407038499|gb|EKE39159.1| DNA-directed RNA polymerase, alpha subunit, N-terminal domain
containing protein [Entamoeba nuttalli P19]
Length = 259
Score = 183 bits (465), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 108/280 (38%), Positives = 161/280 (57%), Gaps = 42/280 (15%)
Query: 77 RVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHR 136
R+ I + + +EFD++GID ++AN RRI+IAE+PTMAIE V++ +N+S I DE+L HR
Sbjct: 6 RIVKISESPEKVEFDVMGIDVSVANGLRRIMIAEVPTMAIEMVVLEDNSSAIPDEMLCHR 65
Query: 137 LGLIPIIVDPRLFEYMSENDTSN--EKNTIVFKLHVLCERGGPRLTVK----TNELKWLP 190
LGLIPI+ DPR F++ + ++ E++TIVF L V C + V +++L W P
Sbjct: 66 LGLIPILADPRKFKFPKDRHFTDPTEEDTIVFTLDVTCTLDSAKNPVNNKVYSSDLIWEP 125
Query: 191 NGSELPLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPML-DITIARLGPGQEIEL 249
G + ET F++ PI+P+ DI IA L P Q I+
Sbjct: 126 QGEQ---ETT------------------------FADCPIKPVFDDILIAELQPHQHIKC 158
Query: 250 EAHAVKGIGKTHAKWSPVATAWYRMLPEIVLLEDVEDEDAEKLVKTCPVNVFDIEDIGSG 309
+ KGIG+ HAK+SPV A YR++P+I +++ + E + CP+NVFDIED
Sbjct: 159 KLFCCKGIGQDHAKFSPVCPATYRLMPKITIMKQSKKMSKE-IKNCCPLNVFDIED---- 213
Query: 310 KKRATVAQPRACTLCRECLRCGEEWEKRVSIRRVKDHFIC 349
V PR C +CREC+R EE + V + R ++H++C
Sbjct: 214 -GELIVKNPRNCKMCRECIR--EERSEYVKLGREENHYLC 250
>gi|392593120|gb|EIW82446.1| hypothetical protein CONPUDRAFT_136940 [Coniophora puteana
RWD-64-598 SS2]
Length = 358
Score = 183 bits (465), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 125/322 (38%), Positives = 175/322 (54%), Gaps = 53/322 (16%)
Query: 48 HTENVM---YSGAYASMGVDNSLQLDHFCNNFRVEVIRLTKDDMEFDLIGIDAAIANAFR 104
H NV Y G Y D+S D F V+V RL+ ++FDL+G+DA+IANAFR
Sbjct: 18 HVSNVSSTDYPGHYPHE--DHSWDPDQFRQKCNVQVNRLSNRSIDFDLVGVDASIANAFR 75
Query: 105 RILIAELPTMAIEKVLIANNTSVIQDEVLAHRLGLIPIIVDPRLFEYM-SENDTSNEKNT 163
RILIAE+PT+AIE+V + NNTSVI DEVLAHRLGL+P+ VDP E+ S + + ++NT
Sbjct: 76 RILIAEVPTIAIEQVYVWNNTSVIVDEVLAHRLGLVPLNVDPSFLEFKESPSIQATDRNT 135
Query: 164 IVFKLHVLCERG--------GPRL-----TVKTNELKWLPNGSELPLETKPDSNPSSKPR 210
+VFKL V C R P++ V +++L+W+P G + + PS
Sbjct: 136 LVFKLEVTCTRNRNTPKDVTDPKMLYNNSEVLSSDLRWVPQGEQEEIFAANIPTPS---- 191
Query: 211 TYTSFSSSQDLLPEFSNNPIRPMLDITIARLGPGQEIELEAHAVKGIGKTHAKWSPVATA 270
NP +I +A+L PGQE+ +E HAVKG+GK HAK+ VATA
Sbjct: 192 -----------------NP-----NIVLAKLRPGQEVNMELHAVKGVGKDHAKFCAVATA 229
Query: 271 WYRMLPEIVLLED--VEDEDAEKLVKTCPVNVFDIEDIGSGKKRATVAQP--RACTLCRE 326
YR+LP +VL + + A K K V ++ + K +V + R ++ RE
Sbjct: 230 SYRLLPLVVLNPEKPIPPSSAHKFQKCFSPGVIRVDPV---TKEVSVDEKNLRNESMSRE 286
Query: 327 CLRCGEEWEKRVSIRRVKDHFI 348
R E+E + RV+DHFI
Sbjct: 287 VYR-HVEFEDCCQLARVRDHFI 307
>gi|296811216|ref|XP_002845946.1| DNA-directed RNA polymerase I and III subunit RPAC1 [Arthroderma
otae CBS 113480]
gi|238843334|gb|EEQ32996.1| DNA-directed RNA polymerase I and III subunit RPAC1 [Arthroderma
otae CBS 113480]
Length = 380
Score = 183 bits (464), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 125/312 (40%), Positives = 170/312 (54%), Gaps = 38/312 (12%)
Query: 62 GVDNSLQLDHFCNNFRVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLI 121
G +++ +D F ++E + + F LIG+DAAIANAFRRILIAE+PT+AIE V I
Sbjct: 38 GENHAWSIDKFSEGLKIEFHKNDPLEASFSLIGVDAAIANAFRRILIAEIPTLAIEYVYI 97
Query: 122 ANNTSVIQDEVLAHRLGLIPI------IVDPRLFEYMSEND-----TSNEKNTIVFKLHV 170
NNTSVIQDEVLAHRLGLIP+ I R F+ E D T + NTIV +L
Sbjct: 98 QNNTSVIQDEVLAHRLGLIPLKGSLEGINWLRWFKVPKEGDPDSGSTHEDSNTIVLRLVK 157
Query: 171 LCERGGPRLTVKTNELKWLPNGSELPLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPI 230
C+ P + L N + + + + + + Q S NP
Sbjct: 158 ECKL-NPNAHPSEEDPTVLYNNAHIYAKDLIFEPQGRQEKYFHGDGVIQ------SANP- 209
Query: 231 RPMLDITIARLGPGQEIELEAHAVKGIGKTHAKWSPVATAWYRMLPEIVLLEDVEDEDAE 290
DI +A+L PGQ+I++E H +KGIG HAK+SPVATA YR+LP+I +L + +DA
Sbjct: 210 ----DILLAKLRPGQKIDIEMHCIKGIGADHAKYSPVATASYRLLPDIQILRPILGKDAI 265
Query: 291 KLVKTCPVNVFDIEDI--------GS------GKKRATVAQPRACTLCRECLRCGEEWEK 336
K P V IE + GS G+K+A V P T+ RECLR +E++
Sbjct: 266 KFAGCFPRGVIGIEHVTAAESAQPGSGYEGKEGEKKAVVVDPFKDTVSRECLRH-DEFKG 324
Query: 337 RVSIRRVKDHFI 348
+V + RV+DHFI
Sbjct: 325 KVKLGRVRDHFI 336
>gi|336372326|gb|EGO00665.1| hypothetical protein SERLA73DRAFT_178536 [Serpula lacrymans var.
lacrymans S7.3]
gi|336385070|gb|EGO26217.1| hypothetical protein SERLADRAFT_447454 [Serpula lacrymans var.
lacrymans S7.9]
Length = 363
Score = 183 bits (464), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 115/289 (39%), Positives = 169/289 (58%), Gaps = 20/289 (6%)
Query: 64 DNSLQLDHFCNNFRVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIAN 123
D+S LD F +V+V RL+ +EFDL+G DA+IANAFRRILIAE+PT+++E+V + +
Sbjct: 40 DHSWDLDQFNQRLKVKVQRLSGRSIEFDLVGTDASIANAFRRILIAEVPTISVERVYVWD 99
Query: 124 NTSVIQDEVLAHRLGLIPIIVDPRLFEYM-SENDTSNEKNTIVFKLHVLCERGGPRLTVK 182
NTSV+ DE+LA R+GL+P+ VDP + + ND + ++NT+VF+L V CER
Sbjct: 100 NTSVVVDEILAQRIGLVPLNVDPAWMDTKETTNDQATDRNTLVFRLKVACERN------- 152
Query: 183 TNELKWLPNGSELPLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPM-LDITIARL 241
K P GS P E +S+ S ++ + + F+++P P +I + +L
Sbjct: 153 ----KNAPKGSTDPREMYINSDVLS---SHLEWEPQGEQATVFASSPPAPTNPNIVLGKL 205
Query: 242 GPGQEIELEAHAVKGIGKTHAKWSPVATAWYRMLPEIVLLED--VEDEDAEKLVKTCPVN 299
PGQEI++E HAVKG+GK HAK+ PVATA YR+LP ++L + V AEK K
Sbjct: 206 RPGQEIDIEMHAVKGVGKDHAKFCPVATASYRLLPLVILNPEKPVPPHLAEKFQKCFSPG 265
Query: 300 VFDIEDIGSGKKRATVAQPRACTLCRECLRCGEEWEKRVSIRRVKDHFI 348
V + D + R ++ RE R E+E + RV+DHF+
Sbjct: 266 VIRV-DPQTKAISLDEQNMRKESMSREVYR-HPEFEGCTQLARVRDHFL 312
>gi|194856389|ref|XP_001968740.1| GG25034 [Drosophila erecta]
gi|190660607|gb|EDV57799.1| GG25034 [Drosophila erecta]
Length = 329
Score = 183 bits (464), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 113/300 (37%), Positives = 165/300 (55%), Gaps = 46/300 (15%)
Query: 64 DNSLQLDHFCNNFRVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIAN 123
D+ ++ F +++++ +D +EFDLIG+ AIANAFRR++++++P+MAIEKV I N
Sbjct: 25 DDVFSVEAFKEKLHIKIVKNDEDGLEFDLIGVYPAIANAFRRLMLSDVPSMAIEKVYIYN 84
Query: 124 NTSVIQDEVLAHRLGLIPIIVDPRLFEYMSENDT--SNEKNTIVFKLHVLCER---GGPR 178
NTS+IQDEVLAHR+GL+P+ DPRLF Y +E T E++T+ F+L V C R G
Sbjct: 85 NTSIIQDEVLAHRMGLLPLRADPRLFAYRTEESTEAGTEQDTLEFELKVKCSRRRDAGKD 144
Query: 179 LT----------VKTNELKWLPNGSELPLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNN 228
+ V + LKWLP G + + + E + N
Sbjct: 145 QSNFDDIYKNHKVYSGHLKWLPKGKQAQIYS------------------------ESAVN 180
Query: 229 PIRPMLDITIARLGPGQEIELEAHAVKGIGKTHAKWSPVATAWYRMLPEIVLLEDVEDED 288
I DI IA+L PG E++L AVKG+G+ HAK+SPVATA YR+LP+I L +V +D
Sbjct: 181 CIHD--DILIAQLRPGHELDLRLVAVKGLGRDHAKFSPVATATYRLLPQIKLNREVSGKD 238
Query: 289 AEKLVKTCPVNVFDIEDIGSGKKRATVAQPRACTLCRECLRCGEEWEKRVSIRRVKDHFI 348
A L V I++ + A V R T R R + V++ R++DH+I
Sbjct: 239 AYLLQSCFSPGVIGIDE----NETAYVKDARYDTCSRNVYRY-PQLNDAVTLSRIRDHYI 293
>gi|85119573|ref|XP_965664.1| DNA-directed RNA polymerases I and III 40 kDa polypeptide
[Neurospora crassa OR74A]
gi|28927476|gb|EAA36428.1| DNA-directed RNA polymerases I and III 40 kDa polypeptide
[Neurospora crassa OR74A]
Length = 378
Score = 183 bits (464), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 122/333 (36%), Positives = 176/333 (52%), Gaps = 35/333 (10%)
Query: 35 QRTRVQCNLDAPIHTENVMYSGAYASMGVDNSLQLDHFCNNFRVEVIRLTKDDMEFDLIG 94
+R V N + + + + G Y G D+S ++ F + RV + + +F LIG
Sbjct: 24 KRNTVHINAETVTNVTSTDFPGFYP--GEDHSWDIEKFRESVRVVFHQNDPYEAQFSLIG 81
Query: 95 IDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRLGLIPIIVDPR----LFE 150
+DA+IANAFRRI+IA++PT+AIE + + NNTSVIQDEVL HRLGLIP +
Sbjct: 82 VDASIANAFRRIMIADIPTLAIEDIFMWNNTSVIQDEVLGHRLGLIPFTGGKEGLHNFLK 141
Query: 151 YMSENDTSNEKNTIVFKLHVLCERGGPRLTVKTNELKWLPNGSELPLETKPDSNPSSKPR 210
+ + +T + NT+ +L V CE NE P S+ P E +++ +K
Sbjct: 142 WYKKGETPCDYNTVELELKVKCE---------NNES--APADSKDPKELYHNAHVYAKDI 190
Query: 211 TYTSFSSSQDLLPEFSNNPIRPML-DITIARLGPGQEIELEAHAVKGIGKTHAKWSPVAT 269
+ N IRP DI +A++ PGQEI+L H KG+G HAK+SPVAT
Sbjct: 191 KFVPKGRQAKYFS--GENAIRPTNPDILVAKMRPGQEIDLTMHMHKGVGSDHAKFSPVAT 248
Query: 270 AWYRMLPEIVLLEDVEDEDAEKLVKTCPVNVFDIEDI--------GSGKK------RATV 315
A YR++P I +LE + DAEK K P V +E + GSG + +A V
Sbjct: 249 ASYRLMPTITILEPILGRDAEKFQKCFPEGVIGLEKVTKEEAKKKGSGYEGHEGELKAVV 308
Query: 316 AQPRACTLCRECLRCGEEWEKRVSIRRVKDHFI 348
T+ RECLR +E++ +V + R +DHFI
Sbjct: 309 LDAMRDTVSRECLRH-DEFKDKVKLGRRRDHFI 340
>gi|260950905|ref|XP_002619749.1| conserved hypothetical protein [Clavispora lusitaniae ATCC 42720]
gi|238847321|gb|EEQ36785.1| conserved hypothetical protein [Clavispora lusitaniae ATCC 42720]
Length = 333
Score = 183 bits (464), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 123/335 (36%), Positives = 172/335 (51%), Gaps = 62/335 (18%)
Query: 32 IEFQRTRVQCNLDAPIHTENVMYSGAYASMGVDNSLQLDHFCNNFRVEVIRLTKDDMEFD 91
IE+ R + D P H+ D++ ++ F F +++ + + FD
Sbjct: 7 IEYNRVTNTSSTDFPGHSAE------------DHAWDIEKFKRTFDIDIKYIAGRNANFD 54
Query: 92 LIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRLGLIPIIVDPRLFEY 151
L ID +IANAFRRI+IAE+P++A E V + NNTSVIQDEVLAHR+GLIP+ VDP +
Sbjct: 55 LRHIDTSIANAFRRIMIAEVPSVAAETVYVFNNTSVIQDEVLAHRIGLIPLNVDPDALVW 114
Query: 152 M----SENDTSNEKNTIVFKLHVLCERG--------GPRL-----TVKTNELKWLPNGSE 194
+ E + N+ NTIV L V C R P+L +V +LK+ P G +
Sbjct: 115 IDPAADEAERFNDTNTIVMSLDVSCTRNPHAPAGTTDPKLLYRNSSVYARDLKFEPQGRQ 174
Query: 195 LPLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPM-LDITIARLGPGQEIELEAHA 253
L F ++P+ P DI +A+L PGQEI L H
Sbjct: 175 AEL---------------------------FKDSPVVPCDPDILLAKLRPGQEISLRVHC 207
Query: 254 VKGIGKTHAKWSPVATAWYRMLPEIVLLEDVEDEDAEKLVKTCPVNVFDIEDIGSGKKRA 313
V G+G HAK+SPVATA YR++P I +LE + E A + K P V I++ K A
Sbjct: 208 VLGVGSDHAKFSPVATASYRLMPVIDILEPISGEQAVRFQKCFPSGVIGIDE----KGEA 263
Query: 314 TVAQPRACTLCRECLRCGEEWEKRVSIRRVKDHFI 348
VA R T+ RE LR EE+ +V + R ++HFI
Sbjct: 264 YVADARKDTVSREVLR-HEEFSGKVKLGRDREHFI 297
>gi|326915378|ref|XP_003203995.1| PREDICTED: DNA-directed RNA polymerases I and III subunit
RPAC1-like, partial [Meleagris gallopavo]
Length = 266
Score = 183 bits (464), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 109/242 (45%), Positives = 147/242 (60%), Gaps = 16/242 (6%)
Query: 108 IAELPTMAIEKVLIANNTSVIQDEVLAHRLGLIPIIVDPRLFEYMSENDT-SNEKNTIVF 166
+ E+PTMA+EKV + NNTS++QDE+LAHRLGLIPI DPRLFEY ++ D E +T+ F
Sbjct: 1 LPEVPTMAVEKVFVYNNTSIVQDEILAHRLGLIPIRADPRLFEYRNQGDEEGTEIDTLQF 60
Query: 167 KLHVLCERGGPRLTVKTNELKWLPNGSELPLETKPDSNPSSKPRTYTSFSSSQDLLPEFS 226
+L + C R P+ ++++ P E + SK T+ + DL P+
Sbjct: 61 QLKIKCSRN-PQAAKESSD----------PNELYFNHKVYSKHMTWVPLGNQTDLFPDAD 109
Query: 227 NNPIRPMLDITIARLGPGQEIELEAHAVKGIGKTHAKWSPVATAWYRMLPEIVLLEDVED 286
P+ DI IA L PGQEI++ H VKGIGK HAK+SPVATA YR+LP+I LL+ +ED
Sbjct: 110 FRPVHD--DILIALLRPGQEIDVLMHCVKGIGKDHAKFSPVATASYRLLPDITLLQPIED 167
Query: 287 EDAEKLVKTCPVNVFDIEDIGSGKKRATVAQPRACTLCRECLRCGEEWEKRVSIRRVKDH 346
E AE L K V +I++I GKK A VA R T RE R E + V + RV++H
Sbjct: 168 EAAETLQKCFSPGVIEIQNI-KGKKVARVANARLDTFSREVFR-HEGLKNLVRLARVRNH 225
Query: 347 FI 348
+I
Sbjct: 226 YI 227
>gi|320591803|gb|EFX04242.1| DNA-directed RNA polymerase 1 and 3 subunit [Grosmannia clavigera
kw1407]
Length = 376
Score = 182 bits (463), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 127/349 (36%), Positives = 172/349 (49%), Gaps = 59/349 (16%)
Query: 35 QRTRVQCNLDAPIHTENVMYSGAYASMGVDNSLQLDHFCNNFRVEVIRLTKDDMEFDLIG 94
+R V N + + + G Y G D + +D F N +++ + + + F LIG
Sbjct: 14 RRQTVGVNYETVTNVSTTEFPGNYP--GEDLAWDVDEFRNKLQIQFHQNEQFEASFSLIG 71
Query: 95 IDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRLGLIPII----------- 143
+DA+IANAFRRI+I+E+PT+AIE I NNTSVIQDEVLAHRLGLIP
Sbjct: 72 VDASIANAFRRIMISEIPTVAIETAYIDNNTSVIQDEVLAHRLGLIPFTGGYDGLRNFIK 131
Query: 144 --------VDPRLFEYMSENDTSNEKNTIVFKLHVLCERGGPRLTVKTNELKWLPNGSEL 195
DP F S + NTI KL V C R +T+ LK N
Sbjct: 132 WWKRPGPDADPNEFP------PSFDYNTIKLKLQVECTRNRSAAPGETDPLKLYHNAHVY 185
Query: 196 P--LETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPM-LDITIARLGPGQEIELEAH 252
+E P+ N +P ++ N IRP+ DI +A+L PGQ I++E H
Sbjct: 186 ARDIEFVPEGN---QPSVFS------------GENAIRPVNPDILVAKLRPGQAIDIEMH 230
Query: 253 AVKGIGKTHAKWSPVATAWYRMLPEIVLLEDVEDEDAEKLVKTCPVNVFDIEDIGS---- 308
KGIG HAK+SPV TA YR+LP I +L+ + DA K P V +E +
Sbjct: 231 MHKGIGSDHAKFSPVCTASYRLLPTITILQPILGADAVKFASCFPDGVIGLEKVTRKDAA 290
Query: 309 ---------GKKRATVAQPRACTLCRECLRCGEEWEKRVSIRRVKDHFI 348
G +A V P T+ RECLR E++K+V + R +DHFI
Sbjct: 291 QDEAYVDHIGDDKAVVVDPMRDTVSRECLR-HPEFQKKVKLGRRRDHFI 338
>gi|171696332|ref|XP_001913090.1| hypothetical protein [Podospora anserina S mat+]
gi|170948408|emb|CAP60572.1| unnamed protein product [Podospora anserina S mat+]
Length = 372
Score = 182 bits (463), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 128/355 (36%), Positives = 184/355 (51%), Gaps = 51/355 (14%)
Query: 24 VPQKLPPHIEFQRTR-VQCNLDAPIHTENVMYSGAYASMGVDNSLQLDHFCNNFRVEVIR 82
+P K P E ++ + V NL+ + + G Y G D++ ++ F F VE +
Sbjct: 1 MPHKPPTQEELEKRKIVGVNLETVTDVSSTDFPGHYP--GEDHAWDIERFKRGFSVEFHQ 58
Query: 83 LTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRLGLIPI 142
+ F LIGIDA+IANAFRRI+IA++PT+AIE V + NNTSVIQDEVLAHRLGLIP
Sbjct: 59 NDPHEASFSLIGIDASIANAFRRIMIADVPTLAIENVFVWNNTSVIQDEVLAHRLGLIPF 118
Query: 143 IVDP-------RLFEYMSENDTSNEK--NTIVFKLHVLCERGGPRLTVKTNELKWLPNGS 193
+ + + D + K NT+ +L+V CE N +
Sbjct: 119 TGGREGLTDFLKWYRKPANGDPAECKDFNTVALELNVKCEH----------------NEN 162
Query: 194 ELPLETKP-----DSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPM-LDITIARLGPGQEI 247
P ET P ++ +K + D + IRP+ DI IA+L PGQEI
Sbjct: 163 ADPNETDPTKLYHHAHVYAKDIVFKPIGRQVDYFS--GEDIIRPVNPDILIAKLRPGQEI 220
Query: 248 ELEAHAVKGIGKTHAKWSPVATAWYRMLPEIVLLEDVEDEDAEKLVKTCPVNVFDIEDI- 306
++ H KG+G HAK+SPVATA YR++P I + + + DAEK + P V +E +
Sbjct: 221 NVQMHMHKGVGSDHAKFSPVATASYRIMPTITITQPILGRDAEKFQRCFPKGVIGLEKVT 280
Query: 307 -------GSGKK------RATVAQPRACTLCRECLRCGEEWEKRVSIRRVKDHFI 348
GSG + +A V P++ T+ RE LR EE++ +V + R +DHFI
Sbjct: 281 AEEAAQKGSGYEGHEGELKAVVVDPKSDTVSREALRH-EEFKDKVKLGRRRDHFI 334
>gi|255724476|ref|XP_002547167.1| DNA-directed RNA polymerases I and III 40 kDa polypeptide [Candida
tropicalis MYA-3404]
gi|240135058|gb|EER34612.1| DNA-directed RNA polymerases I and III 40 kDa polypeptide [Candida
tropicalis MYA-3404]
Length = 337
Score = 182 bits (462), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 125/324 (38%), Positives = 169/324 (52%), Gaps = 38/324 (11%)
Query: 32 IEFQRTRVQCNLDAPIHTENVMYSGAYASMGVDNSLQLDHFCNNFRVEVIRLTKDDMEFD 91
IE+ R + D P H +N G YA ++ F N F +++ + + FD
Sbjct: 9 IEYNRVTNTTSTDFPGHQQN----GDYA-------WDIEKFKNKFEIKITNMGERTGTFD 57
Query: 92 LIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRLGLIPIIVDPRLFEY 151
LI ID +I+NAFRRI+IAE+P++A+E V + NTSVIQDEVLA R+GLIP + P +
Sbjct: 58 LIHIDTSISNAFRRIMIAEVPSVAVETVYMFMNTSVIQDEVLAQRIGLIPWNISPDKLSW 117
Query: 152 MSE----NDTSNEKNTIVFKLHVLCER--GGPRLTVKTNELKWLPNGSELPLETKPDSNP 205
+ E ND E NTIV L V C + P+ N L N L+ +P
Sbjct: 118 VDESVDVNDRFTEDNTIVLSLDVTCTKNPNAPKDATDPNVLYKNSNVYAKDLKFEPHGTQ 177
Query: 206 SSKPRTYTSFSSSQDLLPEFSNNPIRPM-LDITIARLGPGQEIELEAHAVKGIGKTHAKW 264
+ K F + P+ P +I IA+L PGQEI L AH + GIG HAK+
Sbjct: 178 AEK----------------FRDTPVVPCDPNILIAKLRPGQEISLRAHCILGIGSDHAKF 221
Query: 265 SPVATAWYRMLPEIVLLEDVEDEDAEKLVKTCPVNVFDIEDIGSGKKRATVAQPRACTLC 324
SPVATA YR+LP I + E + + AEK K P V I+ S A VA R T+
Sbjct: 222 SPVATASYRLLPVIDIKEPITGKLAEKFQKCFPPGVIGID---SKTGEAYVADARKDTVS 278
Query: 325 RECLRCGEEWEKRVSIRRVKDHFI 348
RE LR E++ +V + R +DHFI
Sbjct: 279 REVLR-HPEFDGKVKLGRQRDHFI 301
>gi|124804792|ref|XP_001348113.1| DNA-directed RNA polymerase I, putative [Plasmodium falciparum 3D7]
gi|23496369|gb|AAN36026.1|AE014842_48 DNA-directed RNA polymerase I, putative [Plasmodium falciparum 3D7]
Length = 333
Score = 182 bits (462), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 111/324 (34%), Positives = 169/324 (52%), Gaps = 38/324 (11%)
Query: 31 HIEFQRTRVQCNLDAPIHTENVMYSGAYASMGVDNSLQLDHFCNNFRVEVIRLTKDDMEF 90
+++++ VQ + P + + G+Y +N + F N + VI+ ++ +
Sbjct: 3 NVKYRDNFVQLGEEGPRNATTTNFYGSYYFSDKENYFDIRKFEENLEMNVIKNEENILIL 62
Query: 91 DLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRLGLIPIIVDPRLFE 150
++ +D +IANA RRI+++E+PT+AIEKV + NT +I DE+L HRLGLIP D L
Sbjct: 63 EIKNMDVSIANALRRIMLSEVPTIAIEKVNMYQNTGIIADEILCHRLGLIPFKFDADLIN 122
Query: 151 YMSENDTSNEKNTIVFKLHV--LCERGG--PRLTVKTNELKWLPNGSELPLETKPDSNPS 206
Y +N+ N N FKLHV +R G ++ + +LKW P + + K + NP
Sbjct: 123 YKEDNEKYNHLNCFCFKLHVKFSSKRTGNDNYQSIYSKDLKWCPINEQQRI--KFEKNP- 179
Query: 207 SKPRTYTSFSSSQDLLPEFSNNPIRPMLDITIARLGPGQEIELEAHAVKGIGKTHAKWSP 266
P+ +I I ++ GQEIEL KGIGKTHAKWSP
Sbjct: 180 --PKVVDE--------------------NILITKISSGQEIELICFLQKGIGKTHAKWSP 217
Query: 267 VATAWYRMLPEIVL--LEDVEDEDAEKLVKTCPVNVFDIEDIGSGKKRATVAQPRACTLC 324
V TA Y+M P E + E+ + LV CP VFDIED ++ V P +C+ C
Sbjct: 218 VCTAVYKMYPHFSFNTNEQLSYEEKKDLVNICPQKVFDIED----SQQIFVKNPLSCSTC 273
Query: 325 RECLRCGEEWEKRVSIRRVKDHFI 348
R C+ E++ K++S ++ K+HFI
Sbjct: 274 RVCI---EKYPKKISFQKEKNHFI 294
>gi|240279628|gb|EER43133.1| DNA-directed RNA polymerase I and III [Ajellomyces capsulatus H143]
gi|325092757|gb|EGC46067.1| DNA-directed RNA polymerase I and III [Ajellomyces capsulatus H88]
Length = 380
Score = 182 bits (462), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 121/339 (35%), Positives = 183/339 (53%), Gaps = 39/339 (11%)
Query: 35 QRTRVQCNLDAPIHTENVMYSGAYASMGVDNSLQLDHFCNNFRVEVIRLTKDDMEFDLIG 94
QR + N + + + + G + G ++ +D F N ++ + + F L+G
Sbjct: 13 QRKVIGINAETVTNISSTDFPGHWP--GENHEWSIDEFKRNLKIIYHKNEPYEASFSLVG 70
Query: 95 IDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRLGLIPIIVDP------RL 148
+DAAIANAFRRI+IAE+P++AIE V I NNTSVIQDEVLAHRLGL+P+ R
Sbjct: 71 VDAAIANAFRRIMIAEIPSLAIETVYIHNNTSVIQDEVLAHRLGLVPLTGSSEGINWLRW 130
Query: 149 FEYMSEN--DTSNE---KNTIVFKLHVLCERGGPRLTVKTNELKWLPNGSELPLETKPDS 203
F +E D+ +E NT+V L+V C P+ + ++ + N + +
Sbjct: 131 FRQPTEGRPDSGSELADYNTVVLHLNVECT-NNPKASANEDDPQKRYNHAHV-YAKDITF 188
Query: 204 NPSSKPRTYTSFSSSQDLLPEFSNNPIRPMLDITIARLGPGQEIELEAHAVKGIGKTHAK 263
+P + TY F ++ S NP DI +A+L PGQ+I++E H VKGIG HAK
Sbjct: 189 HPVGRQETY--FQEPDGVIR--SANP-----DILLAKLRPGQKIDIEMHCVKGIGADHAK 239
Query: 264 WSPVATAWYRMLPEIVLLEDVEDEDAEKLVKTCPVNVFDIEDIGS--------------G 309
+SPVATA YR+LP+I ++ + DA K + P V I+ + + G
Sbjct: 240 FSPVATASYRLLPDIKIIRPILGNDALKFARCFPKGVIGIDSVSAEEASRPGSGYEGHEG 299
Query: 310 KKRATVAQPRACTLCRECLRCGEEWEKRVSIRRVKDHFI 348
+K+ V P T+ RECLR +E++ +V + R++DHFI
Sbjct: 300 EKKVVVVDPFKDTMSRECLRH-DEFQGKVKLGRIRDHFI 337
>gi|307206448|gb|EFN84486.1| DNA-directed RNA polymerases I and III subunit RPAC1 [Harpegnathos
saltator]
Length = 390
Score = 182 bits (462), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 114/293 (38%), Positives = 165/293 (56%), Gaps = 22/293 (7%)
Query: 65 NSLQLDHFCNNFRVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANN 124
N+L L+ F R+EV++ + +EFD+IG +A+ NAFRRIL++E+P+MAIEKV + NN
Sbjct: 43 NALPLEKFQKTMRIEVVQDKDNVLEFDMIGCSSALVNAFRRILLSEVPSMAIEKVYVINN 102
Query: 125 TSVIQDEVLAHRLGLIPIIVDPRLFEYMSEN----DTSNEKNTIVFKLHVLCERGGPRLT 180
TSV+QDEVLAHRLGLIP+ DPRLFEY N D ++++T+ ++L V C + +
Sbjct: 103 TSVVQDEVLAHRLGLIPLRADPRLFEYPPSNGRKDDEVSDQDTLRYELKVACTKNPQK-- 160
Query: 181 VKTNELKWLPNGSELPLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPMLDITIAR 240
S+LP E +S+ SK + ++ P + DI I++
Sbjct: 161 ---------SQDSQLPEEIYKNSSVYSKDIKWVPIGRQAEMFPNGAEQLGVLENDILISK 211
Query: 241 LGPGQEIELEAHAVKGIGKTHAKWSPVATAWYRMLPEIVLLEDVEDEDAEKLVKTC--PV 298
+ PG EI + HA KGI K HAK+SP++ A YR+LP I LL V + A+ L+K+C P
Sbjct: 212 MRPGHEIHVYMHAFKGISKDHAKYSPLSIATYRLLPNIELLTPVTGKKAD-LLKSCFSPG 270
Query: 299 NVFDIE---DIGSGKKRATVAQPRACTLCRECLRCGEEWEKRVSIRRVKDHFI 348
+ +E + G + A V R R R E + V + RV DHFI
Sbjct: 271 VIEVVERKTEEGESVREALVKSARYDYCSRNVFRY-PELKDCVKLTRVPDHFI 322
>gi|20129237|ref|NP_608885.1| CG3756 [Drosophila melanogaster]
gi|7296912|gb|AAF52185.1| CG3756 [Drosophila melanogaster]
gi|21429120|gb|AAM50279.1| LP03982p [Drosophila melanogaster]
Length = 333
Score = 182 bits (461), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 114/300 (38%), Positives = 163/300 (54%), Gaps = 46/300 (15%)
Query: 64 DNSLQLDHFCNNFRVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIAN 123
D+ + F ++++R +D +EFDLIG+ AIANAFRR++++++P+MAIEKV I N
Sbjct: 29 DDVFSVQAFKEKLHIKIVRNDEDGLEFDLIGVYPAIANAFRRLMLSDVPSMAIEKVYIYN 88
Query: 124 NTSVIQDEVLAHRLGLIPIIVDPRLFEYMSENDT--SNEKNTIVFKLHVLCER---GGPR 178
NTS+IQDEVLAHR+GL+P+ DPRLF Y +E T E++T+ F+L V C R G
Sbjct: 89 NTSIIQDEVLAHRMGLLPLRADPRLFAYRTEESTEAGTEQDTLEFELKVKCSRRRDAGKD 148
Query: 179 LT----------VKTNELKWLPNGSELPLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNN 228
+ V + LKWLP G + + + E + N
Sbjct: 149 QSNFDDIYKNHKVYSGHLKWLPKGKQAQIYS------------------------ESAVN 184
Query: 229 PIRPMLDITIARLGPGQEIELEAHAVKGIGKTHAKWSPVATAWYRMLPEIVLLEDVEDED 288
I DI IA+L PG E++L AVKG+G+ HAK+SPVATA YR+LP I L +V +D
Sbjct: 185 CIHD--DILIAQLRPGHELDLRLVAVKGLGRDHAKFSPVATATYRLLPMIKLNREVTGKD 242
Query: 289 AEKLVKTCPVNVFDIEDIGSGKKRATVAQPRACTLCRECLRCGEEWEKRVSIRRVKDHFI 348
A L V I++ + A V R T R R + V++ R++DH+I
Sbjct: 243 AYLLQNCFSPGVIGIDE----NETAYVKDARYDTCSRNVYRY-PQLNDAVTLARIRDHYI 297
>gi|189203213|ref|XP_001937942.1| DNA-directed RNA polymerases I and III subunit RPAC1 [Pyrenophora
tritici-repentis Pt-1C-BFP]
gi|187985041|gb|EDU50529.1| DNA-directed RNA polymerases I and III subunit RPAC1 [Pyrenophora
tritici-repentis Pt-1C-BFP]
Length = 376
Score = 181 bits (460), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 118/320 (36%), Positives = 168/320 (52%), Gaps = 46/320 (14%)
Query: 62 GVDNSLQLDHFCNNFRVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLI 121
G ++ LD+F +NF V + D +F L GID ++ANAFRRIL++E+PT+AIE V I
Sbjct: 36 GENHEWNLDYFRDNFNVVFHKNDPLDAQFSLTGIDTSVANAFRRILLSEIPTLAIEDVYI 95
Query: 122 ANNTSVIQDEVLAHRLGLIPIIVDPRLFEYMS-------ENDTSN---EKNTIVFKLHVL 171
NTS+IQDEVLAHRLGLIP+ D M E++ S +NT+ L
Sbjct: 96 YQNTSIIQDEVLAHRLGLIPLCGDRATLRRMKWYAKPTDEDEGSGGPTSENTVALTLKTK 155
Query: 172 CERGGPRLTVKTNELKWLPNG--SELPLETKPD-----SNPSSKPRTYTSFSSSQDLLPE 224
C W P G + ET PD N +K + + + L E
Sbjct: 156 C--------------TWQPGGVARAVAGETDPDRLYVGHNVYAKDMRFEPNGNQAENLSE 201
Query: 225 FSNNPIRPM-LDITIARLGPGQEIELEAHAVKGIGKTHAKWSPVATAWYRMLPEIVLLED 283
IR DI I ++ PGQE+E+ HA+KGIG+ HAK+SPVATA YR++P I + +
Sbjct: 202 AEGKHIRSTNPDILICKMRPGQELEIRMHAIKGIGQDHAKFSPVATASYRLMPTIDITKP 261
Query: 284 VEDEDAEKLVKTCPVNVFDIEDIGS-------------GKKRATVAQPRACTLCRECLRC 330
+ DA+K + P V ++ + S G+ +A VA P T+ RECLR
Sbjct: 262 IVGADAKKFSRCFPSGVIRLDTVTSADIEKHPELEGKEGEPKAVVANPMNDTVSRECLR- 320
Query: 331 GEEWEKRVSIRRVKDHFICK 350
E++ +V + R++DHFI +
Sbjct: 321 HPEFKDKVKLGRIRDHFIFR 340
>gi|45187904|ref|NP_984127.1| ADR031Cp [Ashbya gossypii ATCC 10895]
gi|44982688|gb|AAS51951.1| ADR031Cp [Ashbya gossypii ATCC 10895]
gi|374107343|gb|AEY96251.1| FADR031Cp [Ashbya gossypii FDAG1]
Length = 364
Score = 181 bits (460), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 114/285 (40%), Positives = 160/285 (56%), Gaps = 24/285 (8%)
Query: 69 LDHFCNNFRVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVI 128
+D F V++ L + + FDL+ +D +IANAFRRI+I+E+P++A E V NNTSVI
Sbjct: 63 VDEFRRTMDVQIKSLDEREANFDLLRVDTSIANAFRRIMISEVPSVAPEYVYFFNNTSVI 122
Query: 129 QDEVLAHRLGLIPIIVDPRLFEY----MSENDTSNEKNTIVFKLHVLCERGGPRLTVKTN 184
QDEVLAHR+GL+P+ VDP + + + E + ++NT+V L+V C
Sbjct: 123 QDEVLAHRIGLVPLKVDPDMLTWVDKSLPEAERFTDENTVVLSLNVKCTHNPD------- 175
Query: 185 ELKWLPNGSELPLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPM-LDITIARLGP 243
P GS P E +++ ++ F L F+ P+ P DI +A+L P
Sbjct: 176 ----APKGSTDPKELYRNAHIYARD---LKFEPQGKQLETFAKCPVVPADPDILLAKLRP 228
Query: 244 GQEIELEAHAVKGIGKTHAKWSPVATAWYRMLPEIVLLEDVEDEDAEKLVKTCPVNVFDI 303
GQEI L H + GIG HAK+SPVATA YR++P I ++E + DAEK VK P V I
Sbjct: 229 GQEISLRVHCILGIGSDHAKFSPVATASYRLMPYINIVEPITGPDAEKFVKCFPPGVAAI 288
Query: 304 EDIGSGKKRATVAQPRACTLCRECLRCGEEWEKRVSIRRVKDHFI 348
+ G A V R T+ RE LR E E++V + RV+DHFI
Sbjct: 289 NEKGE----AFVQDARKDTVSREVLR-HPELEQKVKLGRVRDHFI 328
>gi|195576648|ref|XP_002078187.1| GD23312 [Drosophila simulans]
gi|194190196|gb|EDX03772.1| GD23312 [Drosophila simulans]
Length = 333
Score = 181 bits (460), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 114/300 (38%), Positives = 163/300 (54%), Gaps = 46/300 (15%)
Query: 64 DNSLQLDHFCNNFRVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIAN 123
D+ + F ++++R +D +EFDLIG+ AIANAFRR++++++P+MAIEKV I N
Sbjct: 29 DDVFSIQAFKEKLHIKIVRNDEDGLEFDLIGVYPAIANAFRRLMLSDVPSMAIEKVYIYN 88
Query: 124 NTSVIQDEVLAHRLGLIPIIVDPRLFEYMSENDT--SNEKNTIVFKLHVLCER---GGPR 178
NTS+IQDEVLAHR+GL+P+ DPRLF Y +E T E++T+ F+L V C R G
Sbjct: 89 NTSIIQDEVLAHRMGLLPLRADPRLFAYRTEESTEAGTEQDTLEFELKVKCSRRRDAGKD 148
Query: 179 LT----------VKTNELKWLPNGSELPLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNN 228
+ V + LKWLP G + + + E + N
Sbjct: 149 QSNFDDIYKNHKVYSGHLKWLPKGKQAQIYS------------------------ESAVN 184
Query: 229 PIRPMLDITIARLGPGQEIELEAHAVKGIGKTHAKWSPVATAWYRMLPEIVLLEDVEDED 288
I DI IA+L PG E++L AVKG+G+ HAK+SPVATA YR+LP I L +V +D
Sbjct: 185 CIHD--DILIAQLRPGHELDLRLVAVKGLGRDHAKFSPVATATYRLLPLIKLNREVTGKD 242
Query: 289 AEKLVKTCPVNVFDIEDIGSGKKRATVAQPRACTLCRECLRCGEEWEKRVSIRRVKDHFI 348
A L V I++ + A V R T R R + V++ R++DH+I
Sbjct: 243 AYLLQNCFSPGVIGIDE----NETAYVKDARYDTCSRNVYRY-PQLNDAVTLARIRDHYI 297
>gi|350297001|gb|EGZ77978.1| DNA-directed RNA polymerases I and III 40 kDa polypeptide
[Neurospora tetrasperma FGSC 2509]
Length = 378
Score = 181 bits (460), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 121/333 (36%), Positives = 175/333 (52%), Gaps = 35/333 (10%)
Query: 35 QRTRVQCNLDAPIHTENVMYSGAYASMGVDNSLQLDHFCNNFRVEVIRLTKDDMEFDLIG 94
+R V N + + + + G Y G D+S ++ F + R + + +F LIG
Sbjct: 24 KRNTVHINAETVTNVTSTDFPGFYP--GEDHSWDIEKFRESVRAVFHQNDPYEAQFSLIG 81
Query: 95 IDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRLGLIPIIVDPR----LFE 150
+DA+IANAFRRI+IA++PT+AIE + + NNTSVIQDEVL HRLGLIP +
Sbjct: 82 VDASIANAFRRIMIADIPTLAIEDIFMWNNTSVIQDEVLGHRLGLIPFTGGKEGLHNFLK 141
Query: 151 YMSENDTSNEKNTIVFKLHVLCERGGPRLTVKTNELKWLPNGSELPLETKPDSNPSSKPR 210
+ + +T + NT+ +L V CE NE P S+ P E +++ +K
Sbjct: 142 WYKKGETPCDYNTVELELKVKCE---------NNES--APADSKDPKELYHNAHVYAKDI 190
Query: 211 TYTSFSSSQDLLPEFSNNPIRPML-DITIARLGPGQEIELEAHAVKGIGKTHAKWSPVAT 269
+ N IRP DI +A++ PGQEI+L H KG+G HAK+SPVAT
Sbjct: 191 KFVPKGRQAKYFS--GENAIRPTNPDILVAKMRPGQEIDLTMHMHKGVGSDHAKFSPVAT 248
Query: 270 AWYRMLPEIVLLEDVEDEDAEKLVKTCPVNVFDIEDI--------GSGKK------RATV 315
A YR++P I +LE + DAEK K P V +E + GSG + +A V
Sbjct: 249 ASYRLMPTITILEPILGRDAEKFQKCFPEGVIGLEKVTKEEAKKKGSGYEGHEGELKAVV 308
Query: 316 AQPRACTLCRECLRCGEEWEKRVSIRRVKDHFI 348
T+ RECLR +E++ +V + R +DHFI
Sbjct: 309 LDAMRDTVSRECLRH-DEFKDKVKLGRRRDHFI 340
>gi|452836262|gb|EME38206.1| hypothetical protein DOTSEDRAFT_57363 [Dothistroma septosporum
NZE10]
Length = 393
Score = 180 bits (457), Expect = 7e-43, Method: Compositional matrix adjust.
Identities = 123/349 (35%), Positives = 179/349 (51%), Gaps = 46/349 (13%)
Query: 36 RTRVQCNLDAPIHTENVMYSGAYASMGVDNSLQLDHFCNNFRVEVIRLTKDDMEFDLIGI 95
R V N + +T + G Y D+ L+ F N +VE D F L+G+
Sbjct: 15 RRVVNVNAETVTNTASTDIPGHYGPKQ-DDDWHLERFKQNLKVEFHHNKPFDSVFSLVGV 73
Query: 96 DAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRLGLIPIIVDPRLFEYM--- 152
D++IANA+RRIL+AELPT++IE V +NTS+IQDEVLAHRLGLIP+ + M
Sbjct: 74 DSSIANAYRRILLAELPTLSIEDVYFFDNTSIIQDEVLAHRLGLIPLTGSRKGLREMRWF 133
Query: 153 -------------------------SENDTSNEKNTIVFKLHVLCERGGPRLTVKTNELK 187
++ND N+ NT+V L V C R + +
Sbjct: 134 KKPPPKDDFAARAQWDADRAEGRVETDNDAPNDFNTVVLSLQVEC-RWKTVDEDGVDGRQ 192
Query: 188 WLPNGSELPLETKPDSNPSSKPRTY-------TSFSSSQDLLPEFSNNPIRPMLDITIAR 240
+G P E +SN + + T + S ++++ P+ P DI IA+
Sbjct: 193 LAKDGETDPKEKYANSNVYAHQIQFEPQGDRQTGWFSGEEII-----RPVNP--DILIAK 245
Query: 241 LGPGQEIELEAHAVKGIGKTHAKWSPVATAWYRMLPEIVLLEDVEDEDAEKLVKTCPVNV 300
L PGQ I + HA+KGIG HAK+SPVATA YR+LP+I + + + +DA+ P V
Sbjct: 246 LRPGQRINVRMHAIKGIGADHAKFSPVATASYRLLPDIKITQPIVGKDAKTFQHCFPRGV 305
Query: 301 FDIEDI-GSGKKRATVAQPRACTLCRECLRCGEEWEKRVSIRRVKDHFI 348
+ED SG+K+A V P T+ RE LR +E++ +V + R++DHFI
Sbjct: 306 IKLEDDPESGEKKAVVDDPFKDTVSREVLRH-DEFKGKVKLGRIRDHFI 353
>gi|254574330|ref|XP_002494274.1| RNA polymerase subunit, common to RNA polymerase I and III
[Komagataella pastoris GS115]
gi|238034073|emb|CAY72095.1| RNA polymerase subunit, common to RNA polymerase I and III
[Komagataella pastoris GS115]
gi|328353904|emb|CCA40301.1| DNA-directed RNA Polymerase III subunit C5 [Komagataella pastoris
CBS 7435]
Length = 335
Score = 180 bits (457), Expect = 8e-43, Method: Compositional matrix adjust.
Identities = 111/296 (37%), Positives = 165/296 (55%), Gaps = 37/296 (12%)
Query: 64 DNSLQLDHFCNNFRVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIAN 123
D + L F + ++V T + FDLI ID +IANAFRRI+I+E+P++++E V I N
Sbjct: 28 DYAWDLQKFKDTLEIKVGYRTDRTLNFDLIHIDTSIANAFRRIMISEVPSVSVEHVYINN 87
Query: 124 NTSVIQDEVLAHRLGLIPIIVDPRLFEYMS----ENDTSNEKNTIVFKLHVLCERGGPRL 179
N+SVIQDEVLA R+GL+P+ +DP ++ E++ ++NT+V L+V C +
Sbjct: 88 NSSVIQDEVLASRIGLVPLQIDPDRLSWVDRGVEESERFTDENTVVISLNVACTKN---- 143
Query: 180 TVKTNELKWLPNGSELPLETKPDSNPSSKPRTYTSFSSSQDLLPE------FSNNPIRPM 233
P K +++P + R +S P+ F+++P+
Sbjct: 144 ----------------PHPAKNNNDPENLYRNSIVYSRDLKFEPQGRQVETFADSPVVAA 187
Query: 234 -LDITIARLGPGQEIELEAHAVKGIGKTHAKWSPVATAWYRMLPEIVLLEDVEDEDAEKL 292
DI IA+L PGQEI L+AH + G+G HAK+SPV TA YR+LP I + + + +DAEK
Sbjct: 188 DPDIVIAKLRPGQEISLKAHCILGLGSDHAKFSPVCTASYRLLPVINITQPITGKDAEKF 247
Query: 293 VKTCPVNVFDIEDIGSGKKRATVAQPRACTLCRECLRCGEEWEKRVSIRRVKDHFI 348
K P V IE+ +A V R T+ RECLR E+E +V + R +DHFI
Sbjct: 248 QKCFPKGVIAIEN-----GQAVVKDARRDTVSRECLR-HPEFEGKVKLARQRDHFI 297
>gi|195114368|ref|XP_002001739.1| GI17014 [Drosophila mojavensis]
gi|193912314|gb|EDW11181.1| GI17014 [Drosophila mojavensis]
Length = 333
Score = 180 bits (456), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 115/301 (38%), Positives = 165/301 (54%), Gaps = 47/301 (15%)
Query: 64 DNSLQLDHFCNNFRVEVIRLTKD-DMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIA 122
D +D F + +V ++R ++ +EFDLIG+ AIANAFRR++++E+P+MAIEKV I
Sbjct: 28 DEVFNMDVFKSKLQVVIVRNDEEHGLEFDLIGVYPAIANAFRRLMLSEVPSMAIEKVYIY 87
Query: 123 NNTSVIQDEVLAHRLGLIPIIVDPRLFEYMSE--NDTSNEKNTIVFKLHVLCERGGPRLT 180
NNTS+IQDEVLAHR+GL+P+ DPRLF Y ++ D E++T+ ++L V C R
Sbjct: 88 NNTSIIQDEVLAHRMGLLPLRADPRLFAYRTDESTDQGTEQDTLEYELKVKCTRRKDASK 147
Query: 181 VKTN-------------ELKWLPNGSELPLETKPDSNPSSKPRTYTSFSSSQDLLPEFSN 227
++N LKWLP G + + ++ SS + E
Sbjct: 148 DQSNFDDIYRNHKVYSGHLKWLPKGKQAQIYSE----------------SSVGCIHE--- 188
Query: 228 NPIRPMLDITIARLGPGQEIELEAHAVKGIGKTHAKWSPVATAWYRMLPEIVLLEDVEDE 287
DI IA+L PG E++L AVKGIGK HAK+SPVATA+YR+LP+I L +V +
Sbjct: 189 -------DILIAQLRPGHELDLRLIAVKGIGKDHAKFSPVATAYYRLLPQINLTREVRGK 241
Query: 288 DAEKLVKTCPVNVFDIEDIGSGKKRATVAQPRACTLCRECLRCGEEWEKRVSIRRVKDHF 347
DA L V I++ + A V R + R R V++ RV+DH+
Sbjct: 242 DAYLLQSCFSPGVIGIDE----NECAYVKDARYDSCSRNVFRY-PHLADAVTMGRVRDHY 296
Query: 348 I 348
I
Sbjct: 297 I 297
>gi|449705384|gb|EMD45440.1| DNA-directed RNA polymerases I and III subunit RPAC1, putative,
partial [Entamoeba histolytica KU27]
Length = 249
Score = 180 bits (456), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 107/279 (38%), Positives = 160/279 (57%), Gaps = 42/279 (15%)
Query: 77 RVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHR 136
R+ I + + +EFD++GID ++AN RRI+IAE+PTMAIE V++ +N+S I DE+L HR
Sbjct: 6 RIVKISESPEKVEFDVMGIDVSVANGLRRIMIAEVPTMAIEMVVLEDNSSAIPDEMLCHR 65
Query: 137 LGLIPIIVDPRLFEYMSENDTSN--EKNTIVFKLHVLCERGGPRLTVK----TNELKWLP 190
LGLIPI+ DPR F++ + ++ E++TIVF L V C + V +++L W P
Sbjct: 66 LGLIPILADPRKFKFPKDRHFTDPTEEDTIVFTLDVTCTLDSAKNPVNNKVYSSDLIWEP 125
Query: 191 NGSELPLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPML-DITIARLGPGQEIEL 249
G + ET F++ PI+P+ DI IA L P Q I+
Sbjct: 126 QGEQ---ETT------------------------FADCPIKPVFDDILIAELQPHQHIKC 158
Query: 250 EAHAVKGIGKTHAKWSPVATAWYRMLPEIVLLEDVEDEDAEKLVKTCPVNVFDIEDIGSG 309
+ KGIG+ HAK+SPV A YR++P+I +++ + E + CP+NVFDIED
Sbjct: 159 KLFCCKGIGQDHAKFSPVCPATYRLMPKITIMKQSKKMSKE-IKNCCPLNVFDIED---- 213
Query: 310 KKRATVAQPRACTLCRECLRCGEEWEKRVSIRRVKDHFI 348
V PR C +CREC+R EE + V + R ++H++
Sbjct: 214 -GELIVKNPRNCKMCRECIR--EERSEYVKLGREENHYL 249
>gi|156849157|ref|XP_001647459.1| hypothetical protein Kpol_1018p139 [Vanderwaltozyma polyspora DSM
70294]
gi|156118145|gb|EDO19601.1| hypothetical protein Kpol_1018p139 [Vanderwaltozyma polyspora DSM
70294]
Length = 335
Score = 180 bits (456), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 115/336 (34%), Positives = 175/336 (52%), Gaps = 61/336 (18%)
Query: 31 HIEFQRTRVQCNLDAPIHTENVMYSGAYASMGVDNSLQLDHFCNNFRVEVIRLTKDDMEF 90
+IE+ R + D P +++ + N+ ++ F ++ + + + + F
Sbjct: 6 NIEYNRVTNTTSTDFPGFSKDDL-----------NAWDVNKFKDDLEINISSINSREANF 54
Query: 91 DLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRLGLIPIIVDPRLFE 150
DLI ID +IANAFRRI+I+E+P++A+E V NNTSV+QDEVLAHR+GL+P+ VDP +
Sbjct: 55 DLINIDTSIANAFRRIMISEVPSVAVEYVYFLNNTSVLQDEVLAHRIGLVPLKVDPDMLS 114
Query: 151 YMS----ENDTSNEKNTIVFKLHVLCERG--------GPRLTVKTN-----ELKWLPNGS 193
++ E + ++NTIV L+V C P++ K + +LK+ P G
Sbjct: 115 WIDSELPEEEKFTDENTIVLSLNVKCTMNPDAPKDCTDPKILYKNSNVYARDLKFEPQGK 174
Query: 194 ELPLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPML-DITIARLGPGQEIELEAH 252
+ + F+N P+ P DI + +L PGQEI L+AH
Sbjct: 175 Q---------------------------VESFANYPVVPANPDILLCKLRPGQEISLKAH 207
Query: 253 AVKGIGKTHAKWSPVATAWYRMLPEIVLLEDVEDEDAEKLVKTCPVNVFDIEDIGSGKKR 312
+ GIG HAK+SPVATA YR++P I + + + EDA+K K V I D G
Sbjct: 208 CILGIGSDHAKFSPVATASYRLMPHINITQPITGEDAKKFQKYFMPGVIGINDNG----E 263
Query: 313 ATVAQPRACTLCRECLRCGEEWEKRVSIRRVKDHFI 348
A V R T+ RE R E+E +V + RV++HFI
Sbjct: 264 AYVKDARKDTVSREVFR-HPEFEGKVKLGRVRNHFI 298
>gi|326428554|gb|EGD74124.1| RNA polymerase subunit I [Salpingoeca sp. ATCC 50818]
Length = 328
Score = 179 bits (455), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 122/327 (37%), Positives = 167/327 (51%), Gaps = 56/327 (17%)
Query: 36 RTRVQCNLDAPIHTENVMYSGAYASMGVDNSLQLDHFCNNFRVEVIRLTKDDMEFDLIGI 95
RT V+ D +H N AY F F++E+ + DMEFD+IG+
Sbjct: 4 RTHVEMARDHVLHPSNPDAQDAY---------DFQAFKEKFKIEMQAIDGMDMEFDMIGV 54
Query: 96 DAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRLGLIPIIVDPRLFEYMSE- 154
DAAIANA RRILI+E+PTMAIE+ I +N+SV+ DE+LAHR+GLIP+ VD R F + E
Sbjct: 55 DAAIANAVRRILISEVPTMAIEQAYIYHNSSVLPDEMLAHRIGLIPLAVDARRFRTLEED 114
Query: 155 NDTSNEKNTIVFKLHVLCE-RGGPRL------------TVKTNELKWLPNGSELPLETKP 201
N+ N+ NT+VF L V C+ R G + V ++++KW P G++
Sbjct: 115 NNEMNDLNTLVFDLDVECKHREGAKAGETDKNKKYINHMVMSSDIKWQPKGNQ------- 167
Query: 202 DSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPMLDITIARLGPGQEIELEAHAVKGIGKTH 261
K R T+ + DI I L PGQ + +E H KG+GK H
Sbjct: 168 ------KDRFKTAICPVHE--------------DIPIVELRPGQRVSMELHCSKGVGKLH 207
Query: 262 AKWSPVATAWYRMLPEIVLLEDVEDEDAEKLVKTCPVNVFDIEDIGSGKKRATVAQPRAC 321
AKWSPVATA YR P IVL + V + A +L + V ++ D A V RA
Sbjct: 208 AKWSPVATASYRNAPHIVLKQRVTGDLAYRLQQCFTDGVIEVRD-----GEAEVVNSRAD 262
Query: 322 TLCRECLRCGEEWEKRVSIRRVKDHFI 348
+ RE LR ++ V R ++HFI
Sbjct: 263 MMSREHLR-HDDLAPLVHTTRRRNHFI 288
>gi|149247366|ref|XP_001528095.1| DNA-directed RNA polymerases I and III 40 kDa polypeptide
[Lodderomyces elongisporus NRRL YB-4239]
gi|146448049|gb|EDK42437.1| DNA-directed RNA polymerases I and III 40 kDa polypeptide
[Lodderomyces elongisporus NRRL YB-4239]
Length = 336
Score = 179 bits (455), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 118/322 (36%), Positives = 171/322 (53%), Gaps = 35/322 (10%)
Query: 32 IEFQRTRVQCNLDAPIHTENVMYSGAYASMGVDNSLQLDHFCNNFRVEVIRLTKDDMEFD 91
IE+ R + D P H ++ YS ++ F ++F +++ + + FD
Sbjct: 9 IEYNRVTNTASTDFPGHQQHGDYS-----------WNIEKFKDSFEIKITNIAERSATFD 57
Query: 92 LIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRLGLIPIIVDPRLFEY 151
LI +D +IANAFRRI+IAE+P++A E V + NTSVIQDEVLAHR+GLIP+ VDP +
Sbjct: 58 LIHVDTSIANAFRRIMIAEVPSVAAETVYLYMNTSVIQDEVLAHRIGLIPLKVDPDSLTW 117
Query: 152 ----MSENDTSNEKNTIVFKLHVLCERGGPRLTVKTNELKWLPNGSELPLETKPDSNPSS 207
+ E++ E NTIV L V C + P S P E +S+ +
Sbjct: 118 VDKKLDESERYTEDNTIVLTLDVACSKN-----------LQAPKNSTDPKEMYKNSHVYA 166
Query: 208 KPRTYTSFSSSQDLLPEFSNNPIRPM-LDITIARLGPGQEIELEAHAVKGIGKTHAKWSP 266
+ F L ++ ++P+ P DI +A+L PGQEI + H + G+G HAK+SP
Sbjct: 167 RD---LKFEPQGSQLEKYKDSPVVPCDPDILLAKLRPGQEISMRVHCILGLGCDHAKFSP 223
Query: 267 VATAWYRMLPEIVLLEDVEDEDAEKLVKTCPVNVFDIEDIGSGKKRATVAQPRACTLCRE 326
VATA YR+LP I + E + + A K K P V I+D G A V R T+ RE
Sbjct: 224 VATASYRLLPVIDIKEPITGDLARKFQKCFPPGVIGIKDDG----EAYVEDARKDTVSRE 279
Query: 327 CLRCGEEWEKRVSIRRVKDHFI 348
LR E+E +V + R +D+FI
Sbjct: 280 VLR-HPEFEGKVKLGRQRDYFI 300
>gi|150951291|ref|XP_001387588.2| RNA polymerase III (C) subunit [Scheffersomyces stipitis CBS 6054]
gi|149388472|gb|EAZ63565.2| RNA polymerase III (C) subunit [Scheffersomyces stipitis CBS 6054]
Length = 336
Score = 179 bits (454), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 121/324 (37%), Positives = 168/324 (51%), Gaps = 39/324 (12%)
Query: 32 IEFQRTRVQCNLDAPIHTENVMYSGAYASMGVDNSLQLDHFCNNFRVEVIRLTKDDMEFD 91
+E+ R + D P H N G YA ++ F + F + + T FD
Sbjct: 9 VEYNRVTNTSSTDFPGHQAN----GDYA-------WDIEKFKDKFEINISYKTDRTANFD 57
Query: 92 LIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRLGLIPIIVDPRLFEY 151
LI ID AIANAFRRI+I+E+P++A E V + NTSVIQDEVLAHR+GLIP+ VDP +
Sbjct: 58 LINIDTAIANAFRRIMISEVPSVAAEAVYMFMNTSVIQDEVLAHRIGLIPLRVDPDKMNW 117
Query: 152 M----SENDTSNEKNTIVFKLHVLCERGGPRLTVKTNELKWLPNGSELPLETKPDSNPSS 207
+ S D E NTIV L V+C + P S P E +++ +
Sbjct: 118 VDKTQSPEDRYTEDNTIVLTLDVVCTKN-----------PHAPKNSTNPKELYRNAHVYA 166
Query: 208 KPRTYTSFSSSQDL---LPEFSNNPIRPMLDITIARLGPGQEIELEAHAVKGIGKTHAKW 264
+ + +L LP + +P DI IA+L PGQEI L AH + G+G HAK+
Sbjct: 167 RDLKFEPHGKQAELFKDLPVVAADP-----DILIAKLRPGQEISLRAHCILGVGCDHAKF 221
Query: 265 SPVATAWYRMLPEIVLLEDVEDEDAEKLVKTCPVNVFDIEDIGSGKKRATVAQPRACTLC 324
SPV+TA YR++P I ++E + + A + K P V I G A V R T+
Sbjct: 222 SPVSTASYRLMPVIDIVEPIRGDSAVRFQKCFPSGVIGINADGE----AYVKDARKDTVS 277
Query: 325 RECLRCGEEWEKRVSIRRVKDHFI 348
RE LR EE++ +V + R +DHFI
Sbjct: 278 REVLR-HEEFDGKVKLGRKRDHFI 300
>gi|326475646|gb|EGD99655.1| DNA-directed RNA polymerase I and III [Trichophyton tonsurans CBS
112818]
gi|326485520|gb|EGE09530.1| DNA-directed RNA polymerase I and III subunit RPAC1 [Trichophyton
equinum CBS 127.97]
Length = 380
Score = 179 bits (454), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 122/318 (38%), Positives = 170/318 (53%), Gaps = 50/318 (15%)
Query: 62 GVDNSLQLDHFCNNFRVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLI 121
G +++ +D F ++E + + F LIG+DAAIANAFRRIL+AE+P +AIE V I
Sbjct: 38 GENHAWSIDKFSEGLKIEFHKNDPLEASFSLIGVDAAIANAFRRILLAEIPALAIEYVYI 97
Query: 122 ANNTSVIQDEVLAHRLGLIPIIVDP------RLFEYMSEND-----TSNEKNTIVFKLHV 170
NNTSVIQDEVLAHRLGLIP+ R F+ E D T + NTIV +L
Sbjct: 98 QNNTSVIQDEVLAHRLGLIPLKGSLEGLNWLRWFKIPKEGDPDSGSTHEDSNTIVLRLVK 157
Query: 171 LCERGGPRLTVKTNELKWLPNGSELPLETKP-----DSNPSSKPRTYTSFSSSQDLLPEF 225
C + N + P E P +++ +K + +
Sbjct: 158 ECTK----------------NRNAAPDEEDPTVLYNNAHIYAKDLVFEPQGRQEKYF--H 199
Query: 226 SNNPIRPM-LDITIARLGPGQEIELEAHAVKGIGKTHAKWSPVATAWYRMLPEIVLLEDV 284
+ I+P DI +A+L PGQ+I++E H +KGIG HAK+SPVATA YR+LP+I +L +
Sbjct: 200 GDGVIQPCNPDILLAKLRPGQKIDIEMHCIKGIGADHAKFSPVATASYRLLPDIKILRPI 259
Query: 285 EDEDAEKLVKTCPVNVFDIED--------IGS------GKKRATVAQPRACTLCRECLRC 330
DA K P V IE+ +GS G+K+A V P T+ RECLR
Sbjct: 260 LGNDAVKFASCFPRGVIGIENVTAAEAAQVGSGYEGKEGEKKAVVVDPFKDTVSRECLR- 318
Query: 331 GEEWEKRVSIRRVKDHFI 348
+E++ +V + RV+DHFI
Sbjct: 319 HDEFKDKVKLGRVRDHFI 336
>gi|68069197|ref|XP_676509.1| DNA-directed RNA polymerase I [Plasmodium berghei strain ANKA]
gi|56496241|emb|CAH97452.1| DNA-directed RNA polymerase I, putative [Plasmodium berghei]
Length = 334
Score = 179 bits (454), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 110/327 (33%), Positives = 169/327 (51%), Gaps = 41/327 (12%)
Query: 31 HIEFQRTRVQCNLDAPIHTENVMYSGAYASMGVDNSLQLDHFCNNFRVEVIRLTKDDMEF 90
+I+++ V+ + P + + G+Y +N + F N +++I+ ++ +
Sbjct: 3 NIKYKDQFVKMGQEGPRNVTTTNFYGSYFLTENENFFDIKKFEENLEMKIIKNEENLLIL 62
Query: 91 DLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRLGLIPIIVDPRLFE 150
++ ++ +IANA RRI+I+E+PT+AIEKV I NT VI DE+L HRLGLIP D L
Sbjct: 63 EIKNLNVSIANALRRIMISEVPTIAIEKVNIFQNTGVIADEILCHRLGLIPFKFDADLIN 122
Query: 151 YMSENDTSNEKNTIVFKLHVLCER------GGPRL-TVKTNELKWLPNGSELPLETKPDS 203
+ ++ N N FKLHV C G + + +LKW P E + K +S
Sbjct: 123 FKDTHEKYNNLNCFCFKLHVKCNSINNNKIGNENYQCIYSKDLKWCPLNEEQKI--KFES 180
Query: 204 NPSSKPRTYTSFSSSQDLLPEFSNNPIRPMLDITIARLGPGQEIELEAHAVKGIGKTHAK 263
NP P+ +I I +LG GQEIEL KGIGKTHAK
Sbjct: 181 NP---PKVVDD--------------------NILITKLGNGQEIELICFLEKGIGKTHAK 217
Query: 264 WSPVATAWYRMLP--EIVLLEDVEDEDAEKLVKTCPVNVFDIEDIGSGKKRATVAQPRAC 321
WSPV TA Y+M P + + E + + + ++ CP NVFDIE+ G+ P C
Sbjct: 218 WSPVCTAVYKMFPTFDFDVHEKFTNYEKKDILSICPKNVFDIEESGN----LVAKNPLDC 273
Query: 322 TLCRECLRCGEEWEKRVSIRRVKDHFI 348
+ CR C+ E++ +++S ++ K+HFI
Sbjct: 274 SSCRACI---EKYPQKISFQKKKNHFI 297
>gi|195386486|ref|XP_002051935.1| GJ24400 [Drosophila virilis]
gi|194148392|gb|EDW64090.1| GJ24400 [Drosophila virilis]
Length = 333
Score = 179 bits (454), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 117/302 (38%), Positives = 168/302 (55%), Gaps = 49/302 (16%)
Query: 64 DNSLQLDHFCNNFRVEVIRLTKDD-MEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIA 122
D +D F + +V ++R +++ +EFDLIG+ AIANAFRR++++E+P+MAIEKV I
Sbjct: 28 DEVFNMDVFKSKLQVVIVRNDEENGLEFDLIGVYPAIANAFRRLMLSEVPSMAIEKVYIY 87
Query: 123 NNTSVIQDEVLAHRLGLIPIIVDPRLFEYMSENDT--SNEKNTIVFKLHVLCERGG---- 176
NNTS+IQDEVLAHR+GL+P+ DPRLF Y +E T E++T+ ++L V C R
Sbjct: 88 NNTSIIQDEVLAHRMGLLPLRADPRLFAYRTEESTEQGTEQDTLEYELKVKCTRRKDASK 147
Query: 177 ---------PRLTVKTNELKWLPNGSELPLETKPDSNPSSKPRTYTSFSSSQDLLPEFSN 227
V + LKWLP G + + T+ +S + E
Sbjct: 148 DQSNFDDIYKNHKVYSGHLKWLPKGKQGQIYTE----------------NSVGCIHE--- 188
Query: 228 NPIRPMLDITIARLGPGQEIELEAHAVKGIGKTHAKWSPVATAWYRMLPEIVLLEDVEDE 287
DI IA+L PG E++L AVKG+GK HAK+SPVATA+YR+LP+I L +V +
Sbjct: 189 -------DILIAQLRPGHELDLRLIAVKGLGKDHAKFSPVATAYYRLLPQINLTREVTGK 241
Query: 288 DAEKLVKTCPVNVFDIEDIGSGKKR-ATVAQPRACTLCRECLRCGEEWEKRVSIRRVKDH 346
DA L+++C F IG + A V R + R R V++ RV+DH
Sbjct: 242 DA-YLLQSC----FSPGVIGIDENECAYVKDARYDSCSRNVYRY-PHLADAVTMARVRDH 295
Query: 347 FI 348
+I
Sbjct: 296 YI 297
>gi|156099087|ref|XP_001615546.1| DNA-directed RNA polymerase I [Plasmodium vivax Sal-1]
gi|148804420|gb|EDL45819.1| DNA-directed RNA polymerase I, putative [Plasmodium vivax]
Length = 333
Score = 179 bits (454), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 113/324 (34%), Positives = 165/324 (50%), Gaps = 40/324 (12%)
Query: 32 IEFQRTRVQCNLDAPIHTENVMYSGAYASMGVDNSLQLDHFCNNFRVEVIRLTKDDMEFD 91
++F+ V+ + P + + G+Y ++ ++ F N +++ + ++ + +
Sbjct: 4 VKFRDNFVKLKEEGPRNATTTNFYGSYFLSENEHLFDINEFEKNLEMKMHKNEENLLILE 63
Query: 92 LIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRLGLIPIIVDPRLFEY 151
+ ++ +IANA RRI++AE+PT+AIEKV I NT +I DE+L HRLGLIP D L +
Sbjct: 64 VKNLNVSIANALRRIMLAEVPTIAIEKVNIFQNTGIIADEILCHRLGLIPFKFDADLINF 123
Query: 152 MSENDTSNEKNTIVFKLHV-LCERGGPRLT---VKTNELKWLPNGSELPLETKPDSNPSS 207
E + N N FKLHV ++ G T + + +LKW P N
Sbjct: 124 KEEYEKYNHLNCFCFKLHVKFTKKAGSSETCQSIYSRDLKWCP------------INEHQ 171
Query: 208 KPRTYTSFSSSQDLLPEFSNNPIRPMLD-ITIARLGPGQEIELEAHAVKGIGKTHAKWSP 266
K R F NP R + D I I +L GQEIEL KGIGKTHAKWSP
Sbjct: 172 KAR--------------FQKNPPRVVDDNILITKLSNGQEIELICFLEKGIGKTHAKWSP 217
Query: 267 VATAWYRMLPEIVL--LEDVEDEDAEKLVKTCPVNVFDIEDIGSGKKRATVAQPRACTLC 324
V TA Y+M P E E+ + LV CP NVFD+ED + P C+ C
Sbjct: 218 VCTAVYKMYPAFSFNTCEKFTQEEKKDLVNICPKNVFDVEDSDT----LVAKNPLNCSSC 273
Query: 325 RECLRCGEEWEKRVSIRRVKDHFI 348
R C+ E++ K++S +VK+HFI
Sbjct: 274 RVCI---EKYPKKISFEKVKNHFI 294
>gi|33086616|gb|AAP92620.1| Ac2-127 [Rattus norvegicus]
Length = 260
Score = 179 bits (454), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 106/236 (44%), Positives = 144/236 (61%), Gaps = 16/236 (6%)
Query: 114 MAIEKVLIANNTSVIQDEVLAHRLGLIPIIVDPRLFEYMSENDT-SNEKNTIVFKLHVLC 172
MA+EKVL+ NNTS++QDE+LAHRLGLIPI+ DPRLFEY + + E +T+ F+L V C
Sbjct: 1 MAVEKVLVYNNTSIVQDEILAHRLGLIPILADPRLFEYRNPGEEEGTEIDTLQFRLQVRC 60
Query: 173 ERGGPRLTVKTNELKWLPNGSELPLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRP 232
R P +++ P E + ++ T+ + D+ PE + P+
Sbjct: 61 TRN-PSAAKDSSD----------PNELYVNHKVYTRHMTWVPLGNQADVFPEGTVRPVHD 109
Query: 233 MLDITIARLGPGQEIELEAHAVKGIGKTHAKWSPVATAWYRMLPEIVLLEDVEDEDAEKL 292
DI IA+L PGQEI+L H VKGIGK HAK+SPVATA YR+LP+I LLE VE E AE+L
Sbjct: 110 --DILIAQLRPGQEIDLMMHCVKGIGKDHAKFSPVATASYRLLPDITLLEPVEGEAAEEL 167
Query: 293 VKTCPVNVFDIEDIGSGKKRATVAQPRACTLCRECLRCGEEWEKRVSIRRVKDHFI 348
+ V ++++ GKK A VA R T RE R E+ +K V + RV+DH+I
Sbjct: 168 SQCFSPGVIAVQEV-QGKKVARVANARLDTFSREIFR-HEKLKKAVRLARVRDHYI 221
>gi|322708977|gb|EFZ00554.1| DNA-directed RNA polymerases I and III 40 kDa polypeptide
[Metarhizium anisopliae ARSEF 23]
Length = 381
Score = 179 bits (453), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 132/348 (37%), Positives = 179/348 (51%), Gaps = 52/348 (14%)
Query: 32 IEFQRTRVQCNLDAPIHTENVMYSGAYASMGVDNSLQLDHFCNNFRVEVIRLTKDDMEFD 91
+E QR V NL+ +V Y G + G D++ LD F F V + + F
Sbjct: 17 VEEQRNTVGINLETVTDVTSVDYPGHFP--GEDHAYSLDRFRAGFSVNFHQNEANSSSFS 74
Query: 92 LIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRLGLIPIIVDPRLFEY 151
L+G+DA++ANAFRRILIAE+PT+AIE V I NNTSVIQDEVLAHRLGLIP +
Sbjct: 75 LMGLDASLANAFRRILIAEIPTLAIENVYIENNTSVIQDEVLAHRLGLIPFNGGRDGLKN 134
Query: 152 M--------SENDTSN---EKNTIVFKLHVLCERGGPRLTVKTNELKWLPNGSELPLETK 200
+E D + NT+ +L+V C TV + P+ + PLE
Sbjct: 135 FLKWHKKPEAEEDPYAGCFDYNTVRLELNVTC-------TVNPDA---APDERD-PLEAF 183
Query: 201 PDSNPSSKPRTY------TSFSSSQDLLPEFSNNPIRPMLDITIARLGPGQEIELEAHAV 254
+++ +K + F S +D + P+ P DI IA+L P Q I L H
Sbjct: 184 NNAHVYAKDIVFVPTGKQVEFFSGEDAIA-----PVNP--DILIAKLRPRQTINLSMHMH 236
Query: 255 KGIGKTHAKWSPVATAWYRMLPEIVLLEDVEDEDAEKLVKTCPVNVFDIEDI-------- 306
KGIG HAK+SPVATA YR++P I +L+ + DAEK + P V +E +
Sbjct: 237 KGIGADHAKFSPVATASYRLMPTIKILKPILGADAEKFARCFPQGVIGLEKVTPAEAKKA 296
Query: 307 GSGK------KRATVAQPRACTLCRECLRCGEEWEKRVSIRRVKDHFI 348
GSG K+A V T+ RECLR E+E +V + R +DHFI
Sbjct: 297 GSGYEGHAGVKKAVVKDAMKDTVSRECLRHA-EFEGKVKLGRRRDHFI 343
>gi|195472829|ref|XP_002088701.1| GE11271 [Drosophila yakuba]
gi|194174802|gb|EDW88413.1| GE11271 [Drosophila yakuba]
Length = 333
Score = 179 bits (453), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 112/300 (37%), Positives = 162/300 (54%), Gaps = 46/300 (15%)
Query: 64 DNSLQLDHFCNNFRVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIAN 123
D+ + + +++++ +D +EFDLIG+ AIANAFRR++++++P+MAIEKV I N
Sbjct: 29 DDVFSIQAYKEKLHIKIVKNDEDGLEFDLIGVYPAIANAFRRLMLSDVPSMAIEKVYIYN 88
Query: 124 NTSVIQDEVLAHRLGLIPIIVDPRLFEYMSENDT--SNEKNTIVFKLHVLCER---GGPR 178
NTS+IQDEVLAHR+GL+P+ DPRLF Y +E T E++T+ F+L V C R G
Sbjct: 89 NTSIIQDEVLAHRMGLLPLRADPRLFAYRTEESTEAGTEQDTLEFELKVKCSRRRDAGKD 148
Query: 179 LT----------VKTNELKWLPNGSELPLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNN 228
+ V + LKWLP G + + E + N
Sbjct: 149 QSNFDDIYKNHKVYSGHLKWLPKGKQ------------------------AQIYNESAVN 184
Query: 229 PIRPMLDITIARLGPGQEIELEAHAVKGIGKTHAKWSPVATAWYRMLPEIVLLEDVEDED 288
I DI IA+L PG E++L AVKG+G+ HAK+SPVATA YR+LP I L +V +D
Sbjct: 185 CIHD--DILIAQLRPGHELDLRLVAVKGLGRDHAKFSPVATATYRLLPLIKLNREVSGKD 242
Query: 289 AEKLVKTCPVNVFDIEDIGSGKKRATVAQPRACTLCRECLRCGEEWEKRVSIRRVKDHFI 348
A L V I++ + A V R T R R + V++ R++DH+I
Sbjct: 243 AYLLQSCFSPGVIGIDE----NETAYVKDARYDTCSRNVYRY-PQLNDAVTLARIRDHYI 297
>gi|340924182|gb|EGS19085.1| DNA-directed RNA polymerases I and III 40 kDa polypeptide-like
protein [Chaetomium thermophilum var. thermophilum DSM
1495]
Length = 374
Score = 179 bits (453), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 131/352 (37%), Positives = 181/352 (51%), Gaps = 43/352 (12%)
Query: 24 VPQKLPPHIEFQ-RTRVQCNLDAPIHTENVMYSGAYASMGVDNSLQLDHFCNNFRVEVIR 82
+P + P E + R V N + + + + YA G D++ L+ F FRVE +
Sbjct: 1 MPHRPPTKEELEARKIVGINEETVTNVNSTDFPHHYA--GEDHAWDLEAFRREFRVEFHQ 58
Query: 83 LTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRLGLIPI 142
+ F LIG A+IANAFRRI+IA++PT+AIE V I NNTSVIQDEVLAHRLGLIP
Sbjct: 59 NDPYEASFSLIGCHASIANAFRRIMIADIPTLAIETVFINNNTSVIQDEVLAHRLGLIPF 118
Query: 143 IVDPR-LFEYMSE----------NDTSNEKNTIVFKLHVLCERGGPRLTVKTNELKWLPN 191
L +++ N++ + NT+ +L V CE +T+ K +
Sbjct: 119 KGGKEGLHKFLKWWKKPADESQINNSYYDFNTVSLRLEVKCEENPDAAPGETDPTKLYKH 178
Query: 192 GSELPLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPM-LDITIARLGPGQEIELE 250
+ + P + Y S N IRP+ DI IA+L PGQEI L
Sbjct: 179 AHVYARDI--EFCPVGRQHKYFS-----------GENAIRPVNPDILIAKLRPGQEISLS 225
Query: 251 AHAVKGIGKTHAKWSPVATAWYRMLPEIVLLEDVEDEDAEKLVKTCPVNVFDIEDI---- 306
H KG+G HAK+SPVATA YR+LP I ++E + +DAEK K P V +E +
Sbjct: 226 MHMHKGVGSDHAKFSPVATASYRLLPVIDIIEPILGKDAEKFQKCFPKGVIGLERVTKEE 285
Query: 307 ----GSGKK------RATVAQPRACTLCRECLRCGEEWEKRVSIRRVKDHFI 348
GSG + +A V P T+ RECLR E++ +V + R +DHFI
Sbjct: 286 ASRKGSGYEGHEGELKAVVVDPMRDTVSRECLRH-PEFKGKVKLGRRRDHFI 336
>gi|327297236|ref|XP_003233312.1| DNA-directed RNA polymerase I and III [Trichophyton rubrum CBS
118892]
gi|326464618|gb|EGD90071.1| DNA-directed RNA polymerase I and III [Trichophyton rubrum CBS
118892]
Length = 380
Score = 179 bits (453), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 122/318 (38%), Positives = 170/318 (53%), Gaps = 50/318 (15%)
Query: 62 GVDNSLQLDHFCNNFRVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLI 121
G +++ +D F ++E + + F LIG+DAAIANAFRRIL+AE+P +AIE V I
Sbjct: 38 GENHAWSIDRFSEGLKIEFHKNDPLEASFSLIGVDAAIANAFRRILLAEIPALAIEYVYI 97
Query: 122 ANNTSVIQDEVLAHRLGLIPIIVDP------RLFEYMSEND-----TSNEKNTIVFKLHV 170
NNTSVIQDEVLAHRLGLIP+ R F+ E D T + NTIV +L
Sbjct: 98 QNNTSVIQDEVLAHRLGLIPLKGSLEGLNWLRWFKIPKEGDPDSGSTHEDSNTIVLRLVK 157
Query: 171 LCERGGPRLTVKTNELKWLPNGSELPLETKP-----DSNPSSKPRTYTSFSSSQDLLPEF 225
C + N + P E P +++ +K + +
Sbjct: 158 ECTK----------------NRNAAPDEEDPTVLYNNAHIYAKDLVFEPQGRQEKYF--H 199
Query: 226 SNNPIRPM-LDITIARLGPGQEIELEAHAVKGIGKTHAKWSPVATAWYRMLPEIVLLEDV 284
+ I+P DI +A+L PGQ+I++E H +KGIG HAK+SPVATA YR+LP+I +L +
Sbjct: 200 GDGVIQPCNPDILLAKLRPGQKIDIEMHCIKGIGADHAKFSPVATASYRLLPDIKILRPI 259
Query: 285 EDEDAEKLVKTCPVNVFDIED--------IGS------GKKRATVAQPRACTLCRECLRC 330
DA K P V IE+ +GS G+K+A V P T+ RECLR
Sbjct: 260 LGNDAIKFASCFPRGVIGIENVTAVEAAQVGSGYEGKEGEKKAVVVDPFKDTVSRECLR- 318
Query: 331 GEEWEKRVSIRRVKDHFI 348
+E++ +V + RV+DHFI
Sbjct: 319 HDEFKDKVKLGRVRDHFI 336
>gi|258576271|ref|XP_002542317.1| DNA-directed RNA polymerases I and III 40 kDa polypeptide
[Uncinocarpus reesii 1704]
gi|237902583|gb|EEP76984.1| DNA-directed RNA polymerases I and III 40 kDa polypeptide
[Uncinocarpus reesii 1704]
Length = 378
Score = 179 bits (453), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 120/298 (40%), Positives = 167/298 (56%), Gaps = 39/298 (13%)
Query: 78 VEVIRLTKDDME--FDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAH 135
++VI D +E F LIG+DAAIANAFRRILIAE+P++AIE V I NNTSVI DEVL+H
Sbjct: 48 LQVIFHKNDPLEASFSLIGVDAAIANAFRRILIAEIPSLAIEFVFIHNNTSVIHDEVLSH 107
Query: 136 RLGLIPIIVDPRLFEYMS--------ENDT---SNEKNTIVFKLHVLCERGGPRLTVKTN 184
RLGL+P+ +M+ E D+ +++ NTIV KL+ C + P +
Sbjct: 108 RLGLVPLKGSLDGINWMTWFRMPQEGEEDSASVASDHNTIVLKLNAECTK-NPNASPDEE 166
Query: 185 ELKWLPNGSELPLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPMLDITIARLGPG 244
+ L N + + D R T FS P+ P P DI +A+L PG
Sbjct: 167 DPTVLYNNAHV---YARDIVFEPVGRQTTFFSG-----PDGEIQPSNP--DILLAKLRPG 216
Query: 245 QEIELEAHAVKGIGKTHAKWSPVATAWYRMLPEIVLLEDVEDEDAEKLVKTCPVNVFDIE 304
Q+I++E H +KGIG+ HAK+SPVATA YR+LP+I + + +DA K P V IE
Sbjct: 217 QKIDIEMHCIKGIGQDHAKFSPVATASYRLLPDIQITRPILGDDAVKFANCFPPGVIGIE 276
Query: 305 DIGS--------------GKKRATVAQPRACTLCRECLRCGEEWEKRVSIRRVKDHFI 348
+ + G+K+A V P T+ RECLR EE++ +V + R++DHFI
Sbjct: 277 HVTADEAEQKGTGYEGHKGEKKAVVVDPFKDTVSRECLR-HEEFKDKVKLGRIRDHFI 333
>gi|389739703|gb|EIM80896.1| hypothetical protein STEHIDRAFT_105319 [Stereum hirsutum FP-91666
SS1]
Length = 369
Score = 179 bits (453), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 119/312 (38%), Positives = 174/312 (55%), Gaps = 47/312 (15%)
Query: 54 YSGAYASMGVDNSLQLDHFCNNFRVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPT 113
Y G Y D+S L F +V+V L+ +EFDL+G+DA+IAN+ RRIL+AE+PT
Sbjct: 38 YPGHYPDE--DHSWDLQKFKETLKVKVQSLSNRSIEFDLVGVDASIANSLRRILLAEVPT 95
Query: 114 MAIEKVLIANNTSVIQDEVLAHRLGLIPIIVDPRLFEYMSENDTSNEKNTIVFKLHVLCE 173
+AIE V + NNTSV+ DEV AHRLG+IP+ + P+L + + ND ++NT+VFKL+V+CE
Sbjct: 96 IAIELVYVWNNTSVMVDEVFAHRLGMIPLNIPPQLMDMRTVNDQPTDRNTVVFKLNVVCE 155
Query: 174 R--GGPRLT-----------VKTNELKWLPNGSELPLETKPDSNPSSKPRTYTSFSSSQD 220
R P+ + V ++ LKW P G + T F ++
Sbjct: 156 RNPSAPKDSTDPFELYTNHEVLSSHLKWEPAGEQA-----------------TVFEAAS- 197
Query: 221 LLPEFSNNPIRPMLDITIARLGPGQEIELEAHAVKGIGKTHAKWSPVATAWYRMLPEIVL 280
L+P +N +I + +L PGQEI++E HAVKG+ K HAK+ VATA YR+LP I+L
Sbjct: 198 LVPAPTNG------NIVLNKLRPGQEIDVEMHAVKGVAKDHAKFQAVATASYRLLPLIIL 251
Query: 281 --LEDVEDEDAEKLVKTCPVNVFDIEDIGSGKKRATVAQP--RACTLCRECLRCGEEWEK 336
+ V A K + V ++ K +V + R ++ RE LR E+E
Sbjct: 252 NPSKPVPPHLATKFQQCFSPGVIRVD---PKTKEVSVDEEGMRKESMSREVLR-HPEFEG 307
Query: 337 RVSIRRVKDHFI 348
V++ R +DHFI
Sbjct: 308 CVTLARKRDHFI 319
>gi|389583971|dbj|GAB66705.1| DNA-directed RNA polymerase I, partial [Plasmodium cynomolgi strain
B]
Length = 333
Score = 179 bits (453), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 113/324 (34%), Positives = 165/324 (50%), Gaps = 40/324 (12%)
Query: 32 IEFQRTRVQCNLDAPIHTENVMYSGAYASMGVDNSLQLDHFCNNFRVEVIRLTKDDMEFD 91
++F+ V+ + P + + G+Y ++ ++ F N +++ + ++ + +
Sbjct: 4 VKFRDNFVKLKEEGPRNATTTNFYGSYFLSENEHMFDINEFEKNLEMKMHKNEENLLILE 63
Query: 92 LIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRLGLIPIIVDPRLFEY 151
+ ++ +IANA RRI++AE+PT+AIEKV I NT +I DE+L HRLGLIP D L +
Sbjct: 64 VKNLNVSIANALRRIMLAEVPTIAIEKVNIFQNTGIIADEILCHRLGLIPFKFDADLINF 123
Query: 152 MSENDTSNEKNTIVFKLHV-LCERGGPRLT---VKTNELKWLPNGSELPLETKPDSNPSS 207
E + N N FKLHV ++ G T + + +LKW P N
Sbjct: 124 KEEYEKYNHLNCFCFKLHVKFTKKVGSSETSQSIYSRDLKWCP------------INEQQ 171
Query: 208 KPRTYTSFSSSQDLLPEFSNNPIRPMLD-ITIARLGPGQEIELEAHAVKGIGKTHAKWSP 266
K R F NP R + D I I +L GQEIEL KGIGKTHAKWSP
Sbjct: 172 KAR--------------FQKNPPRVVDDNILITKLSNGQEIELICFLEKGIGKTHAKWSP 217
Query: 267 VATAWYRMLPEIVL--LEDVEDEDAEKLVKTCPVNVFDIEDIGSGKKRATVAQPRACTLC 324
V TA Y+M P E + E+ LV CP NVFD+ED + P C+ C
Sbjct: 218 VCTAVYKMYPAFSFNTCEKLTKEEKHDLVSICPKNVFDVEDSDT----LVAKNPLNCSSC 273
Query: 325 RECLRCGEEWEKRVSIRRVKDHFI 348
R C+ E++ K++S +VK+HFI
Sbjct: 274 RVCI---EKYPKKISFEKVKNHFI 294
>gi|221056596|ref|XP_002259436.1| DNA-diDNA-directed RNA polymerase I [Plasmodium knowlesi strain H]
gi|193809507|emb|CAQ40209.1| DNA-diDNA-directed RNA polymerase I, putative [Plasmodium knowlesi
strain H]
Length = 333
Score = 178 bits (452), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 112/324 (34%), Positives = 165/324 (50%), Gaps = 40/324 (12%)
Query: 32 IEFQRTRVQCNLDAPIHTENVMYSGAYASMGVDNSLQLDHFCNNFRVEVIRLTKDDMEFD 91
++F+ V+ + P + + G+Y ++ ++ F N +++ + ++ + +
Sbjct: 4 VKFRDNFVKLKEEGPRNATTTNFYGSYFLSENEHMFDINEFEKNLEMKMHKNEENLLILE 63
Query: 92 LIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRLGLIPIIVDPRLFEY 151
+ ++ +IANA RRI++AE+PT+AIEKV I NT +I DE+L HRLGLIP D L +
Sbjct: 64 VKNLNVSIANALRRIMLAEVPTIAIEKVNIFQNTGIIADEILCHRLGLIPFKFDADLINF 123
Query: 152 MSENDTSNEKNTIVFKLHV-LCERGGPRLT---VKTNELKWLPNGSELPLETKPDSNPSS 207
E + N N FKLHV ++ G T + + +LKW P N
Sbjct: 124 KEEYEKYNHLNCFCFKLHVKFTKKAGSSETSQSIYSRDLKWCP------------INEQQ 171
Query: 208 KPRTYTSFSSSQDLLPEFSNNPIRPMLD-ITIARLGPGQEIELEAHAVKGIGKTHAKWSP 266
K R F NP + + D I I +L GQEIEL KGIGKTHAKWSP
Sbjct: 172 KLR--------------FQKNPPKVVDDNILITKLANGQEIELICFLEKGIGKTHAKWSP 217
Query: 267 VATAWYRMLPEIVL--LEDVEDEDAEKLVKTCPVNVFDIEDIGSGKKRATVAQPRACTLC 324
V TA Y+M P E+ E+ LV CP NVFD+ED + P C+ C
Sbjct: 218 VCTAVYKMYPSFSFNTCENFTKEEKNDLVNICPRNVFDVEDSDT----LVAKNPLNCSSC 273
Query: 325 RECLRCGEEWEKRVSIRRVKDHFI 348
R C+ E++ K++S +VK+HFI
Sbjct: 274 RVCI---EKYPKKISFEKVKNHFI 294
>gi|367044228|ref|XP_003652494.1| hypothetical protein THITE_2114056 [Thielavia terrestris NRRL 8126]
gi|346999756|gb|AEO66158.1| hypothetical protein THITE_2114056 [Thielavia terrestris NRRL 8126]
Length = 374
Score = 178 bits (452), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 123/312 (39%), Positives = 166/312 (53%), Gaps = 38/312 (12%)
Query: 62 GVDNSLQLDHFCNNFRVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLI 121
G D+S ++ F NFRVE + + F LIG DA+IANAFRRI+IA++PT+AIE V I
Sbjct: 38 GEDHSWDIEAFKRNFRVEFHQNDPFEASFSLIGCDASIANAFRRIMIADIPTLAIETVFI 97
Query: 122 ANNTSVIQDEVLAHRLGLIPIIVDPR-LFEYMSE----------NDTSNEKNTIVFKLHV 170
NNTSVIQDEVL+HRLGLIP L +++ N++ + NT+ +L V
Sbjct: 98 NNNTSVIQDEVLSHRLGLIPFRGGKEGLHKFLKWWRKPADESQINNSYYDFNTVSLRLEV 157
Query: 171 LCERGGPRLTVKTNELKWLPNGSELPLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPI 230
CE +T+ K + + + P + Y FS + + P NP
Sbjct: 158 KCEYNEAAAPGETDPTKLYKHAHVYARDI--EFCPVGRQEKY--FSGADAIAPV---NP- 209
Query: 231 RPMLDITIARLGPGQEIELEAHAVKGIGKTHAKWSPVATAWYRMLPEIVLLEDVEDEDAE 290
DI IA+L PGQEI L H KG+G HAK+SPVATA YR+LP I + + DAE
Sbjct: 210 ----DILIAKLRPGQEISLSMHMHKGVGSDHAKFSPVATASYRLLPIIKIERPILGRDAE 265
Query: 291 KLVKTCPVNVFDIEDI--------GSGKK------RATVAQPRACTLCRECLRCGEEWEK 336
K + P V +E + GSG + +A V P T+ RECLR E++
Sbjct: 266 KFARCFPPGVIGLEKVTKKEAAQKGSGYEGHEGELKAVVVDPMRDTVSRECLRH-PEFQG 324
Query: 337 RVSIRRVKDHFI 348
+V + R KDHFI
Sbjct: 325 KVKLGRKKDHFI 336
>gi|167387776|ref|XP_001738304.1| DNA-directed RNA polymerases I and III subunit RPAC1 [Entamoeba
dispar SAW760]
gi|165898594|gb|EDR25427.1| DNA-directed RNA polymerases I and III subunit RPAC1, putative
[Entamoeba dispar SAW760]
Length = 291
Score = 178 bits (452), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 107/280 (38%), Positives = 162/280 (57%), Gaps = 44/280 (15%)
Query: 77 RVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHR 136
R+ I + + +EFD +GID ++AN RRI+IAE+PTMAIE V++ +N+S I DE+L HR
Sbjct: 6 RIIKISESPEKVEFDAMGIDVSVANGLRRIMIAEVPTMAIEMVVLEDNSSAIPDEMLCHR 65
Query: 137 LGLIPIIVDPRLFEYMSENDTSN--EKNTIVFKLHVLCERGGPRLTVK----TNELKWLP 190
LGLIPI+ DPR F++ + ++ E++TIVF L V C + V +++L W P
Sbjct: 66 LGLIPILADPRKFKFPKDRHFTDPTEEDTIVFTLDVTCTLDSAKNPVNNKVYSSDLIWEP 125
Query: 191 NGSELPLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPML-DITIARLGPGQEIEL 249
G + ET F++ PI+P+ DI IA L P Q I+
Sbjct: 126 QGEQ---ETT------------------------FADCPIKPVFDDILIAELQPHQHIKC 158
Query: 250 EAHAVKGIGKTHAKWSPVATAWYRMLPEIVLLEDVEDEDAEKLVKT-CPVNVFDIEDIGS 308
+ KGIG+ HAK+SPV A YR++P+I +++ +++ K +K CP+NVFDIED
Sbjct: 159 KLFCCKGIGQDHAKFSPVCPATYRLMPKITVIK--QNKKMSKEIKNCCPLNVFDIED--- 213
Query: 309 GKKRATVAQPRACTLCRECLRCGEEWEKRVSIRRVKDHFI 348
V PR C +CREC+R EE + + + R ++H++
Sbjct: 214 --GELIVKNPRNCKMCRECIR--EERSEYIKLGREENHYL 249
>gi|315044489|ref|XP_003171620.1| DNA-directed RNA polymerase I and III subunit RPAC1 [Arthroderma
gypseum CBS 118893]
gi|311343963|gb|EFR03166.1| DNA-directed RNA polymerase I and III subunit RPAC1 [Arthroderma
gypseum CBS 118893]
Length = 380
Score = 178 bits (451), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 121/316 (38%), Positives = 169/316 (53%), Gaps = 46/316 (14%)
Query: 62 GVDNSLQLDHFCNNFRVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLI 121
G +++ +D F +++ + + F LIG+DAAIANAFRRIL+AE+P +AIE V I
Sbjct: 38 GENHAWSIDRFREGLKIDFHKNDPLEASFSLIGVDAAIANAFRRILLAEIPALAIEYVYI 97
Query: 122 ANNTSVIQDEVLAHRLGLIPIIVD------PRLFEYMSEND-----TSNEKNTIVFKLHV 170
NNTSVIQDEVLAHRLGLIP+ R F+ E D T + NTIV +L
Sbjct: 98 QNNTSVIQDEVLAHRLGLIPLKGSLEGLNWLRWFKAPKEGDPDSGSTHEDSNTIVLRLVK 157
Query: 171 LCERGGPRLTVKTNELKWLPNGSELPLETKPDSNPSSKPRTYTSFSSSQDLLPE----FS 226
C + + P G E P +++ +K + + S
Sbjct: 158 ECTKN-----------RSAPPGEEDPTILYNNAHIYAKDLVFEPQGRQEKYFHGDGAIQS 206
Query: 227 NNPIRPMLDITIARLGPGQEIELEAHAVKGIGKTHAKWSPVATAWYRMLPEIVLLEDVED 286
NP DI +A+L PGQ+I++E H +KGIG HAK+SPVATA YR+LP+I +L +
Sbjct: 207 CNP-----DILLAKLRPGQKIDIEMHCIKGIGADHAKFSPVATASYRLLPDIKILRPILG 261
Query: 287 EDAEKLVKTCPVNVFDIED--------IGS------GKKRATVAQPRACTLCRECLRCGE 332
DA K P V +E+ +GS G+K+A V P T+ RECLR +
Sbjct: 262 NDAIKFASCFPRGVVAVENVTAAEAAQVGSGYEGKEGEKKAVVVDPFKDTVSRECLR-HD 320
Query: 333 EWEKRVSIRRVKDHFI 348
E++ +V + RV+DHFI
Sbjct: 321 EFKDKVKLGRVRDHFI 336
>gi|156839627|ref|XP_001643502.1| hypothetical protein Kpol_473p3 [Vanderwaltozyma polyspora DSM
70294]
gi|156114116|gb|EDO15644.1| hypothetical protein Kpol_473p3 [Vanderwaltozyma polyspora DSM
70294]
Length = 320
Score = 178 bits (451), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 113/302 (37%), Positives = 165/302 (54%), Gaps = 48/302 (15%)
Query: 64 DNSLQLDHFCNNFRVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIAN 123
DN + F N + + ++ + + DLI +D +IANA RRI+I+E+P++A E + I N
Sbjct: 14 DNIWDANKFRENLEINISKVGERETNLDLINVDTSIANALRRIMISEVPSVAAEYIYILN 73
Query: 124 NTSVIQDEVLAHRLGLIPIIVDPRLFEYMS----ENDTSNEKNTIVFKLHVLCERG--GP 177
NTSVIQDEV+A R+GLIP+ VDP +++ E++ ++NTIV L+V C R P
Sbjct: 74 NTSVIQDEVIAQRIGLIPLKVDPDRLTWLNNDLPEDEKFTDENTIVLSLNVKCTRNLDAP 133
Query: 178 R-----------LTVKTNELKWLPNGSELPLETKPDSNPSSKPRTYTSFSSSQDLLPEFS 226
+ + +LK+ P G + ET DS P S
Sbjct: 134 KDCTDPSILYHNAHIYARDLKFEPQGKQ--EETFADS-------------------PVVS 172
Query: 227 NNPIRPMLDITIARLGPGQEIELEAHAVKGIGKTHAKWSPVATAWYRMLPEIVLLEDVED 286
+P DI IA+L PGQEI L AH + GIG HAK+SPV TA YR++P+I++ E ++
Sbjct: 173 ADP-----DILIAKLRPGQEISLRAHCILGIGADHAKFSPVCTASYRLMPKIIITEKIKG 227
Query: 287 EDAEKLVKTCPVNVFDIEDIGSGKKRATVAQPRACTLCRECLRCGEEWEKRVSIRRVKDH 346
E A++ K P V DI + A V R T+ RE LR EE++ +V + RV++H
Sbjct: 228 ESAKRFQKCFPPGVIDINE----NDEAYVKDARKDTMTREVLR-HEEFQDKVKLDRVRNH 282
Query: 347 FI 348
FI
Sbjct: 283 FI 284
>gi|25155095|ref|NP_504166.2| Protein RPAC-40 [Caenorhabditis elegans]
gi|351060931|emb|CCD68663.1| Protein RPAC-40 [Caenorhabditis elegans]
Length = 366
Score = 178 bits (451), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 121/308 (39%), Positives = 165/308 (53%), Gaps = 42/308 (13%)
Query: 64 DNSLQLD--HFCNNFRVEVIRLTKDDM--EFDLIGIDAAIANAFRRILIAELPTMAIEKV 119
D++ Q D +C+ +V ++ + D M EFD+ I+A IANA RR+LIAE+PTMA+EK+
Sbjct: 40 DDTKQFDINEYCDQIQVAMVNESDDGMTLEFDITRIEAPIANALRRVLIAEVPTMALEKI 99
Query: 120 LIANNTSVIQDEVLAHRLGLIPIIVDPRLFEYMSENDTS-NEKNT-------------IV 165
+ NTSVIQDEVL HRLGL+P+ VDPR F++ E NEK ++
Sbjct: 100 YLYQNTSVIQDEVLCHRLGLLPLRVDPRGFQFPKEKVVGINEKGVDCDEEPEGDPAKNLI 159
Query: 166 FKLHVLCERGGPRLTVKTNELKWLPNGSELPLETKPDS---NPSSKPRTYTSFSSSQDLL 222
FK++V C + N + +P T P N S R + + D
Sbjct: 160 FKINVSCTK----------------NRNAVPTATDPKQLYHNSSVYSRAF-EWVPIADQK 202
Query: 223 PEFSNNPIRPML--DITIARLGPGQEIELEAHAVKGIGKTHAKWSPVATAWYRMLPEIVL 280
+F+ M+ DI +A+L PGQEIE HAVKGIG+ HAK+SPVATA YR+LP I L
Sbjct: 203 TQFTEEAHPRMVSDDILVAKLRPGQEIEASCHAVKGIGRDHAKFSPVATASYRLLPTIRL 262
Query: 281 LEDVEDEDAEKLVKTCPVNVFDIEDIGSGKKRATVAQPRACTLCRECLRCGEEWEKRVSI 340
++ E AE+L V IE G+ K+ A V R T R R E+ K V +
Sbjct: 263 NAEISGEAAERLKSVFSEGVIAIEKKGA-KRIAVVKDARKDTCSRNVFR-HEDLSKVVQL 320
Query: 341 RRVKDHFI 348
+ K HFI
Sbjct: 321 GKNKQHFI 328
>gi|393909614|gb|EFO27840.2| hypothetical protein LOAG_00653 [Loa loa]
Length = 684
Score = 177 bits (449), Expect = 6e-42, Method: Compositional matrix adjust.
Identities = 117/316 (37%), Positives = 165/316 (52%), Gaps = 63/316 (19%)
Query: 64 DNSLQLD--HFCNNFRVEVIRLTKDDM--EFDLIGIDAAIANAFRRILIAELPTMAIEKV 119
+N++Q D + + +V +I ++D M EFDL+G++A IANA RRI IAELPTMAIEKV
Sbjct: 360 NNAIQWDVTTYISKIKVFIINESEDGMALEFDLVGVEAPIANAIRRIFIAELPTMAIEKV 419
Query: 120 LIANNTSVIQDEVLAHRLGLIPIIVDPRLFEY--------------MSENDTSNEKNTIV 165
+ NTS+I DEVL+HRLGL+PI DPRLF+ +E + + ++
Sbjct: 420 YLYQNTSIIPDEVLSHRLGLLPIKADPRLFKMPLAQVVGIDESGVDCNEEPAGDPERNLI 479
Query: 166 FKLHVLCERGGPRLT-------------VKTNELKWLPNGSELPLETKPDSNPSSKPRTY 212
F++ V C R L V +N KW+P G +
Sbjct: 480 FEIKVTCSRNSNALKTATNPKEIYENAFVYSNAFKWIPIGDQ------------------ 521
Query: 213 TSFSSSQDLLPEFSNNPIRPMLDITIARLGPGQEIELEAHAVKGIGKTHAKWSPVATAWY 272
SSS P ++ DI +A+L PGQEIE H +KG+G+ HAK+SPVATA Y
Sbjct: 522 ---SSSLPYPPAMVHD------DILVAQLRPGQEIEARCHCLKGLGRDHAKFSPVATASY 572
Query: 273 RMLPEIVLLEDVEDEDAEKLVKTCPVNVFDIEDIGSGKKRATVAQPRACTLCRECLRCGE 332
R+LP+IVL DA+++ + V +I+ G A V R T R LR E
Sbjct: 573 RLLPQIVLKRKFSGADAQRIKSSFSEGVIEIDADGV----AVVRDARCDTCSRNILR-HE 627
Query: 333 EWEKRVSIRRVKDHFI 348
+ + + + R+KDHFI
Sbjct: 628 DLAEHIELSRIKDHFI 643
>gi|268556380|ref|XP_002636179.1| Hypothetical protein CBG01436 [Caenorhabditis briggsae]
Length = 367
Score = 177 bits (449), Expect = 7e-42, Method: Compositional matrix adjust.
Identities = 119/297 (40%), Positives = 158/297 (53%), Gaps = 38/297 (12%)
Query: 72 FCNNFRVEVIRLTKDDM--EFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQ 129
+C+ +V ++ + D M EFD+ I+A IANA RRILIAE+PTMA+EK+ + NTSVIQ
Sbjct: 51 YCSQIKVAMVNESTDKMTLEFDITRIEAPIANALRRILIAEVPTMALEKIYLYQNTSVIQ 110
Query: 130 DEVLAHRLGLIPIIVDPRLFEYMSENDTS-NEKNT-------------IVFKLHVLCERG 175
DEVL HRLGL+P+ VDPR F++ +E NEK ++FK++V C +
Sbjct: 111 DEVLCHRLGLLPLRVDPRGFQFPTEKVVGINEKGVDCEEEPTGDPARHLIFKINVTCTK- 169
Query: 176 GPRLTVKTNELKWLPNGSELPLETKPDS---NPSSKPRTYTSFS-SSQDLLPEFSNNPIR 231
N + +P T P N S R + Q + N P
Sbjct: 170 ---------------NRNAVPTATDPKQLYHNSSVYSRAFEWVPIGKQSGNYDKKNVPKM 214
Query: 232 PMLDITIARLGPGQEIELEAHAVKGIGKTHAKWSPVATAWYRMLPEIVLLEDVEDEDAEK 291
DI +A+L PGQEIE HAVKGIG+ HAK+SPVATA YR+LP I L ++ E AE+
Sbjct: 215 VSDDILVAKLRPGQEIEASCHAVKGIGRDHAKFSPVATASYRLLPTIRLNAEISGEAAER 274
Query: 292 LVKTCPVNVFDIEDIGSGKKRATVAQPRACTLCRECLRCGEEWEKRVSIRRVKDHFI 348
L V IE G+ K+ A V R T R R E+ K V + + K HFI
Sbjct: 275 LQSVFSEGVIGIEKKGA-KRIAVVKDARKDTCSRNVFR-HEDLAKVVQLGKNKQHFI 329
>gi|429328059|gb|AFZ79819.1| DNA-directed RNA polymerase I, putative [Babesia equi]
Length = 315
Score = 177 bits (448), Expect = 8e-42, Method: Compositional matrix adjust.
Identities = 107/281 (38%), Positives = 158/281 (56%), Gaps = 42/281 (14%)
Query: 75 NFRVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLA 134
N ++ I+ TK + G++ +IANA RRILIAE+PT+AIE V I NT V+QDE+LA
Sbjct: 33 NVKIRFIKNTKFHSVVEFEGLNVSIANALRRILIAEIPTLAIETVEIRQNTGVVQDELLA 92
Query: 135 HRLGLIPIIVDPRLFEYMSENDTSNEKNTIVFKLHVLCER----GGPRLTVKTNELKWLP 190
HRLGL+P VDP F Y +++ +KN++ FKL C R G L++ +L W P
Sbjct: 93 HRLGLVPFNVDPEDFSY-KNHESLGDKNSLCFKLSAKCLRSDSQGRNTLSLYAKDLVWHP 151
Query: 191 NGSELPLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPML-DITIARLGPGQEIEL 249
F+ +Q L +F ++P RP+ DI + +L GQE++L
Sbjct: 152 ------------------------FNEAQKL--KFQDDPPRPIHGDILLTKLAGGQELDL 185
Query: 250 EAHAVKGIGKTHAKWSPVATAWYRMLPEIVLLED--VEDEDAEKLVKTCPVNVFDIEDIG 307
A+ KGIGKTH+KWSPV+TA YR PEI E+ + D E+L + CP++VF ++
Sbjct: 186 TAYLEKGIGKTHSKWSPVSTAVYRFKPEITFSEEFPLSKSDKEELCELCPMDVFSMK--- 242
Query: 308 SGKKRATVAQPRACTLCRECLRCGEEWEKRVSIRRVKDHFI 348
K + +CT CR C+ E + K V ++++ +H I
Sbjct: 243 --KGDICIEDTLSCTSCRACV---ERFPKSVIVKKLNNHII 278
>gi|170087654|ref|XP_001875050.1| predicted protein [Laccaria bicolor S238N-H82]
gi|164650250|gb|EDR14491.1| predicted protein [Laccaria bicolor S238N-H82]
Length = 353
Score = 177 bits (448), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 116/304 (38%), Positives = 165/304 (54%), Gaps = 34/304 (11%)
Query: 54 YSGAYASMGVDNSLQLDHFCNNFRVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPT 113
Y G Y DN L+ F N +V+V RL+ ++FDL+G+DA+IANAFRRI+IAE+PT
Sbjct: 24 YPGHYPDE--DNEWSLEKFKKNLKVKVQRLSNLSIDFDLVGVDASIANAFRRIMIAEVPT 81
Query: 114 MAIEKVLIANNTSVIQDEVLAHRLGLIPIIVDPRLFEYMSEN--DTSNEKNTIVFKLHVL 171
+ IE V + +NTSV+ DEVL+ RLGLIP+ +DP L M E D + ++NTIVF++ +
Sbjct: 82 VCIENVYVWDNTSVVVDEVLSQRLGLIPLNIDPDLI-VMKETSADQATDRNTIVFEIKLT 140
Query: 172 CERGGPRLTVKTNELKWLPNGSELPLETKPDSNPSSKPRTYTSFSSSQDLLPE------F 225
CER P K ++P + SS P F
Sbjct: 141 CERN--------------------PKAKKDSTDPDESYINHEVLSSHLVWKPAGEQEEVF 180
Query: 226 SNNPIRPM-LDITIARLGPGQEIELEAHAVKGIGKTHAKWSPVATAWYRMLPEIVLLEDV 284
+ NP P +I +A+L PGQ++ +E HA+KG+GK HAK+ PVATA YR+LP I + + +
Sbjct: 181 AGNPPAPTNPNIVLAKLRPGQDVHVELHAMKGVGKDHAKYCPVATASYRLLPHIKIKKPI 240
Query: 285 EDEDAEKLVKTCPVNVFDIEDIGSGKKRATVAQPRACTLCRECLRCGEEWEKRVSIRRVK 344
EK K V I D + + R T+ RE LR E++ V + RV+
Sbjct: 241 PPHLGEKFQKCFSPGVIKI-DPRTKEVSVDEHNVRKDTVSREVLR-HPEFKDSVELSRVR 298
Query: 345 DHFI 348
D F+
Sbjct: 299 DFFL 302
>gi|324508945|gb|ADY43772.1| DNA-directed RNA polymerases I and III subunit RPAC1 [Ascaris suum]
Length = 343
Score = 176 bits (447), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 116/296 (39%), Positives = 162/296 (54%), Gaps = 35/296 (11%)
Query: 69 LDHFCNNFRVEVIRLTKDDM--EFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTS 126
++ + + ++++I + D+M EFD+I ++A IANA RRIL+AE+PTMA EK+ + NTS
Sbjct: 25 VERYISRIKIDIINESDDEMTLEFDVIHVEAPIANAMRRILLAEVPTMAFEKIYLYQNTS 84
Query: 127 VIQDEVLAHRLGLIPIIVDPRLFEY--------------MSENDTSNEKNTIVFKLHVLC 172
+IQDEVL HRLGL+PI DPRLFE + E + K ++F+L V C
Sbjct: 85 IIQDEVLCHRLGLLPIRADPRLFEMPLTKVIGINETGVDVDEEPPGDPKRNLIFELKVSC 144
Query: 173 ERGGPRLTVKTNELKWLPNGSELPLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRP 232
+R K N P + P E ++ SK + LP + N +
Sbjct: 145 KR-------KPN----APKSATDPQEIFDNAVVYSKSFEWIPIGDQATSLP-YPPNMVHD 192
Query: 233 MLDITIARLGPGQEIELEAHAVKGIGKTHAKWSPVATAWYRMLPEIVLLEDVEDEDAEKL 292
DI +A+L PGQEIE H VKGIG+ HAK+SPVATA YR+LP+IV+ E EDAE++
Sbjct: 193 --DILVAKLRPGQEIEARCHCVKGIGRDHAKFSPVATASYRLLPDIVIKEKFSGEDAERI 250
Query: 293 VKTCPVNVFDIEDIGSGKKRATVAQPRACTLCRECLRCGEEWEKRVSIRRVKDHFI 348
+ V I+ G A V R T R LR E+ + + + R KDHFI
Sbjct: 251 KNSFSDGVIGIDADGF----AYVKDARRDTCSRNILR-HEDLAEHIELSRRKDHFI 301
>gi|70943148|ref|XP_741656.1| DNA-directed RNA polymerase I [Plasmodium chabaudi chabaudi]
gi|56520171|emb|CAH77688.1| DNA-directed RNA polymerase I, putative [Plasmodium chabaudi
chabaudi]
Length = 297
Score = 176 bits (447), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 108/327 (33%), Positives = 163/327 (49%), Gaps = 43/327 (13%)
Query: 32 IEFQRTRVQCNLDAPIHTENVMYSGAYASMGVDNSLQLDHFCNNFRVEVIRLTKDDMEFD 91
I+++ V+ + P + + G+Y +N ++ F N +++I+ ++ + +
Sbjct: 4 IKYKDQFVKMGQEGPRNATTTNFYGSYFLTENENFFDINKFEENLEMKIIKNEENLLILE 63
Query: 92 LIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRLGLIPIIVDPRLFEY 151
+ ++ +IANA RRI+I+E+PT+AIEKV I NT VI DE+L HRLGLIP + L +
Sbjct: 64 IKNLNVSIANALRRIMISEVPTIAIEKVNIFQNTGVIADEILCHRLGLIPFKFNADLINF 123
Query: 152 MSENDTSNEKNTIVFKLHVLCER------GGPRL-TVKTNELKWLPNGSELPLETKPDSN 204
+ N N FKLHV C G + + +LKW P E +
Sbjct: 124 KDTYEKYNNLNCFCFKLHVKCNSINNNKIGNENYQCIYSKDLKWCPLNEEQKI------- 176
Query: 205 PSSKPRTYTSFSSSQDLLPEFSNNPIRPMLD-ITIARLGPGQEIELEAHAVKGIGKTHAK 263
+F NNP + + D I I +LG GQEIEL KGIGKTHAK
Sbjct: 177 -------------------KFENNPPKVVDDNILITKLGSGQEIELICFLEKGIGKTHAK 217
Query: 264 WSPVATAWYRMLPEIVL--LEDVEDEDAEKLVKTCPVNVFDIEDIGSGKKRATVAQPRAC 321
WSPV TA Y+M P E + + + LV CP VFDIE+ G+ P C
Sbjct: 218 WSPVCTAVYKMFPSFNFDVHEKFTNNEKKDLVNICPKKVFDIEETGN----LVAKNPLDC 273
Query: 322 TLCRECLRCGEEWEKRVSIRRVKDHFI 348
+ CR C+ E++ +++S ++ K+H
Sbjct: 274 SSCRACI---EKYPQKISFQKTKNHLF 297
>gi|346324382|gb|EGX93979.1| DNA-directed RNA polymerases I [Cordyceps militaris CM01]
Length = 380
Score = 176 bits (447), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 132/355 (37%), Positives = 176/355 (49%), Gaps = 68/355 (19%)
Query: 33 EFQRTR-VQCNLDAPIHTENVMYSGAYASMGVDNSLQLDHFCNNFRVEVIRLTKDDMEFD 91
E +R R V N + ++ Y G + G D + L+ F + F V+ + F
Sbjct: 17 ELERRRTVNINKETVTDISSIDYPGHFP--GEDAAFTLERFQSGFSVDFHHNDQFHAAFS 74
Query: 92 LIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRLGLIPIIVD-PRLFE 150
LIG+DA++ANAFRRILIAE+PT+AIE V I NNTSVIQDEVLAHRLGLIP L +
Sbjct: 75 LIGLDASLANAFRRILIAEIPTLAIENVFIENNTSVIQDEVLAHRLGLIPFQGGRAGLQD 134
Query: 151 YM--------SENDTSN--EKNTIVFKLHVLCERGGPRLTVKTNELKWLPNGSELPLETK 200
++ +E+D + + NT+ +L+V C PN P ET
Sbjct: 135 FLKWYKKPADAEDDYAGGFDYNTVRLELNVTC----------------TPNKDAAPGETD 178
Query: 201 PDSN--------------PSSKPRTYTSFSSSQDLLPEFSNNPIRPMLDITIARLGPGQE 246
P P + TY FS + + P NP DI IA++ P Q
Sbjct: 179 PTKAYHNAHVYARDIVFVPMGEQETY--FSGADAIAPV---NP-----DILIAKMRPKQT 228
Query: 247 IELEAHAVKGIGKTHAKWSPVATAWYRMLPEIVLLEDVEDEDAEKLVKTCPVNVFDIEDI 306
I L H KGIG HAK+SPVATA YR++P I +L + DAEK P V ++ +
Sbjct: 229 INLSMHMHKGIGADHAKFSPVATASYRLMPVIKILRPIVGADAEKFQACFPSGVIGLQKV 288
Query: 307 -------GS------GKKRATVAQPRACTLCRECLRCGEEWEKRVSIRRVKDHFI 348
GS G+ RA V P T+ RECLR E+E +V + R +DHFI
Sbjct: 289 TKKDATPGSGLEKAVGQMRAVVEDPMRDTVSRECLRH-PEFEGKVKLGRRRDHFI 342
>gi|50553838|ref|XP_504330.1| YALI0E23947p [Yarrowia lipolytica]
gi|49650199|emb|CAG79929.1| YALI0E23947p [Yarrowia lipolytica CLIB122]
Length = 339
Score = 176 bits (447), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 114/296 (38%), Positives = 165/296 (55%), Gaps = 35/296 (11%)
Query: 62 GVDNSLQLDHFCNNFRVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLI 121
G D++ LD F N +V++ LT + FDLIGID ++ANAFRRI+IA++PT+A+E+V I
Sbjct: 31 GADDAWDLDKFDKNLQVKIHSLTDNYSNFDLIGIDTSLANAFRRIMIADIPTIAVEEVFI 90
Query: 122 ANNTSVIQDEVLAHRLGLIPIIVD-------PRLFEYMSENDTSNEKNTIVFKLHVLCER 174
NTS+IQDEVLAHRLGL+P++++ PR + D ++ NT V +L+V CER
Sbjct: 91 HANTSIIQDEVLAHRLGLVPLVINPERINALPRGLDASEIEDYYDDSNTFVLRLNVTCER 150
Query: 175 GGPRLTVKTNELKWLPNGSELPLETKPDSNPSSKPRTYTSFSSS-QDLLPEFSNNPIR-P 232
L +G T +++ ++ T+ + Q + E N +
Sbjct: 151 --------------LADG------TMKNAHIYARDITFDPMGNQCQWVKDEGLENVFKVA 190
Query: 233 MLDITIARLGPGQEIELEAHAVKGIGKTHAKWSPVATAWYRMLPEIVLLEDVEDEDAEKL 292
DI IA+L P Q I L G G HAK+SPVATA YR++P I + D+ ++A+K
Sbjct: 191 NPDILIAKLRPNQSINLTMFCHLGFGHDHAKFSPVATASYRLMPTITITGDITGDEAKKF 250
Query: 293 VKTCPVNVFDIEDIGSGKKRATVAQPRACTLCRECLRCGEEWEKRVSIRRVKDHFI 348
K P V ++E GK VA R T+ RE LR EE+ +V + R +DHFI
Sbjct: 251 QKCFPKGVIELE---GGK--PVVADARKDTVSREVLRH-EEFNGKVKLGRRRDHFI 300
>gi|71031382|ref|XP_765333.1| DNA-directed RNA polymerase I [Theileria parva strain Muguga]
gi|68352289|gb|EAN33050.1| DNA-directed RNA polymerase I, putative [Theileria parva]
Length = 303
Score = 176 bits (446), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 108/292 (36%), Positives = 158/292 (54%), Gaps = 52/292 (17%)
Query: 64 DNSLQLDHFCNNFRVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIAN 123
DN++ + N +V+ ++ T + +++G+D ++ANA RRILI+E+PT+A+E V I
Sbjct: 21 DNNIPILEKVKNLQVKFLKKTPEFSVVEIVGLDVSLANALRRILISEVPTLAVETVQIYQ 80
Query: 124 NTSVIQDEVLAHRLGLIPIIVDPRLFEYMSENDTS----NEKNTIVFKLHVLCERGGPRL 179
NT VIQDE+LAHRLGLIP +DP LF + S T+ N+KN++ FKL
Sbjct: 81 NTGVIQDELLAHRLGLIPFAIDPDLFNFKSNFKTNCEEINDKNSVCFKLK---------- 130
Query: 180 TVKTNELKWLPNGSELPLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPML-DITI 238
VK N+ + + SS L+ F +NP +P+ DI I
Sbjct: 131 -VKYNKFDQ------------------------SDYLSSNSLM--FKDNPPKPVYDDILI 163
Query: 239 ARLGPGQEIELEAHAVKGIGKTHAKWSPVATAWYRMLPEIVLLEDVEDEDAEK--LVKTC 296
+L PGQEI+L + KGIGK H+KWSPV+TA Y+ +P+I + + EK L K C
Sbjct: 164 TKLAPGQEIDLNMYLEKGIGKVHSKWSPVSTAVYKFMPKIEFSTEHKLTANEKKMLPKIC 223
Query: 297 PVNVFDIEDIGSGKKRATVAQPRACTLCRECLRCGEEWEKRVSIRRVKDHFI 348
P+NVF K + P CT CR CL E + K++ I ++ +H I
Sbjct: 224 PMNVFSF-----SKGEVNIENPLNCTSCRRCL---ELYPKKIIISKLTNHII 267
>gi|7505021|pir||T34006 hypothetical protein H43I07.2 - Caenorhabditis elegans
Length = 697
Score = 176 bits (446), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 121/308 (39%), Positives = 165/308 (53%), Gaps = 42/308 (13%)
Query: 64 DNSLQLD--HFCNNFRVEVIRLTKDDM--EFDLIGIDAAIANAFRRILIAELPTMAIEKV 119
D++ Q D +C+ +V ++ + D M EFD+ I+A IANA RR+LIAE+PTMA+EK+
Sbjct: 371 DDTKQFDINEYCDQIQVAMVNESDDGMTLEFDITRIEAPIANALRRVLIAEVPTMALEKI 430
Query: 120 LIANNTSVIQDEVLAHRLGLIPIIVDPRLFEYMSENDTS-NEKNT-------------IV 165
+ NTSVIQDEVL HRLGL+P+ VDPR F++ E NEK ++
Sbjct: 431 YLYQNTSVIQDEVLCHRLGLLPLRVDPRGFQFPKEKVVGINEKGVDCDEEPEGDPAKNLI 490
Query: 166 FKLHVLCERGGPRLTVKTNELKWLPNGSELPLETKPDS---NPSSKPRTYTSFSSSQDLL 222
FK++V C + N + +P T P N S R + + D
Sbjct: 491 FKINVSCTK----------------NRNAVPTATDPKQLYHNSSVYSRAF-EWVPIADQK 533
Query: 223 PEFSNNPIRPML--DITIARLGPGQEIELEAHAVKGIGKTHAKWSPVATAWYRMLPEIVL 280
+F+ M+ DI +A+L PGQEIE HAVKGIG+ HAK+SPVATA YR+LP I L
Sbjct: 534 TQFTEEAHPRMVSDDILVAKLRPGQEIEASCHAVKGIGRDHAKFSPVATASYRLLPTIRL 593
Query: 281 LEDVEDEDAEKLVKTCPVNVFDIEDIGSGKKRATVAQPRACTLCRECLRCGEEWEKRVSI 340
++ E AE+L V IE G+ K+ A V R T R R E+ K V +
Sbjct: 594 NAEISGEAAERLKSVFSEGVIAIEKKGA-KRIAVVKDARKDTCSRNVFR-HEDLSKVVQL 651
Query: 341 RRVKDHFI 348
+ K HFI
Sbjct: 652 GKNKQHFI 659
>gi|330921707|ref|XP_003299536.1| hypothetical protein PTT_10544 [Pyrenophora teres f. teres 0-1]
gi|311326761|gb|EFQ92375.1| hypothetical protein PTT_10544 [Pyrenophora teres f. teres 0-1]
Length = 376
Score = 176 bits (446), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 118/322 (36%), Positives = 163/322 (50%), Gaps = 50/322 (15%)
Query: 62 GVDNSLQLDHFCNNFRVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLI 121
G ++ LD+F +NF V R D +F L GID ++ANAFRRIL++E+PT+AIE V I
Sbjct: 36 GENHEWNLDYFRDNFNVVFHRNDPTDAQFSLTGIDTSVANAFRRILLSEIPTLAIEDVYI 95
Query: 122 ANNTSVIQDEVLAHRLGLIPIIVDPRLFEYM------------SENDTSNEKNTIVFKLH 169
NTS+IQDEVLAHRLGLIP+ D M S N TS NT+ +L
Sbjct: 96 YQNTSIIQDEVLAHRLGLIPLCGDRASLRAMKWYAKPTDEDEGSGNPTSC--NTVALELK 153
Query: 170 VLCERGGPRLTVKTNELKWLPNG--SELPLETKPDS-----NPSSKPRTYTSFSSSQDLL 222
+C W P G + ET PD N +K +
Sbjct: 154 AMC--------------TWQPGGLARAVAGETDPDKLYVGHNVYAKDIRFEPNGDQAQNF 199
Query: 223 PEFSNNPIRPM-LDITIARLGPGQEIELEAHAVKGIGKTHAKWSPVATAWYRMLPEIVLL 281
+ IR DI I ++ PGQEI L HA+KGI + HAK+SPVATA YR++P I +
Sbjct: 200 SQAEGKHIRSTNPDILICKMRPGQEINLRMHAIKGISQDHAKFSPVATASYRLMPTIDIT 259
Query: 282 EDVEDEDAEKLVKTCPVNVFDIEDIGS-------------GKKRATVAQPRACTLCRECL 328
+ + DA+K + P V ++ + S G+ +A V P T+ RECL
Sbjct: 260 KPIVGADAKKFSRCFPSGVIRLDTVTSADIEKHPELEGKEGEPKAVVENPMNDTVSRECL 319
Query: 329 RCGEEWEKRVSIRRVKDHFICK 350
R E++ +V + R++DHFI +
Sbjct: 320 R-HPEFKDKVKLGRIRDHFIFR 340
>gi|432957842|ref|XP_004085906.1| PREDICTED: DNA-directed RNA polymerases I and III subunit
RPAC1-like, partial [Oryzias latipes]
Length = 264
Score = 175 bits (443), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 108/245 (44%), Positives = 145/245 (59%), Gaps = 22/245 (8%)
Query: 110 ELPTMAIEKVLIANNTSVIQDEVLAHRLGLIPIIVDPRLFEY------MSENDTSNEKNT 163
++PTMAIEKV I NNTS++QDEVLAHRLGL+PI DPRLFEY E + S E +T
Sbjct: 36 QVPTMAIEKVFIYNNTSIVQDEVLAHRLGLVPIKADPRLFEYKNIAEEFGEQEAS-EIDT 94
Query: 164 IVFKLHVLCERGGPRLTVKTNELKWLPNGSELPLETKPDSNPSSKPRTYTSFSSSQDLLP 223
I +L + C R PR + ++++ P E + SK + + D+
Sbjct: 95 IQLQLKIKCSRN-PRASKESSD----------PRELYLNHIVYSKDINWVPLGNQADVFA 143
Query: 224 EFSNNPIRPMLDITIARLGPGQEIELEAHAVKGIGKTHAKWSPVATAWYRMLPEIVLLED 283
+ + DI IA+L PGQE+++ H VKGIGK HAK+SPVATA YR+LP+I L+E
Sbjct: 144 DSRIGAVHD--DIVIAQLRPGQELDVVMHCVKGIGKDHAKFSPVATASYRLLPDITLMEQ 201
Query: 284 VEDEDAEKLVKTCPVNVFDIEDIGSGKKRATVAQPRACTLCRECLRCGEEWEKRVSIRRV 343
VE E AE+L + V D+ED+ GKK A V R T RE LR ++ + V + RV
Sbjct: 202 VEGEKAERLKRCFSRGVIDLEDV-RGKKVAKVVNSRLDTCSREVLR-HKDLKNLVKLGRV 259
Query: 344 KDHFI 348
+DHFI
Sbjct: 260 RDHFI 264
>gi|194766065|ref|XP_001965145.1| GF21532 [Drosophila ananassae]
gi|190617755|gb|EDV33279.1| GF21532 [Drosophila ananassae]
Length = 333
Score = 175 bits (443), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 113/300 (37%), Positives = 163/300 (54%), Gaps = 46/300 (15%)
Query: 64 DNSLQLDHFCNNFRVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIAN 123
D ++ F + ++ ++R +D +EFDLIG+ AIANAFRR++++++P+MAIEKV I N
Sbjct: 29 DEVFNMEVFKSKLQIAIVRNDEDGLEFDLIGVYPAIANAFRRLMLSDVPSMAIEKVYIYN 88
Query: 124 NTSVIQDEVLAHRLGLIPIIVDPRLFEY--MSENDTSNEKNTIVFKLHVLCER---GGPR 178
NTS+IQDEVLAHR+GL+P+ DPRLF Y +T E++T+ F+L V C R G
Sbjct: 89 NTSIIQDEVLAHRMGLLPLRADPRLFAYRTEESTETGTEQDTLEFELKVKCTRRKDAGKD 148
Query: 179 LT----------VKTNELKWLPNGSELPLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNN 228
+ V + LKWLP G + + T+ T D
Sbjct: 149 QSNFDDIYKNHKVYSGHLKWLPKGKQAQIYTE------------TGVGCIHD-------- 188
Query: 229 PIRPMLDITIARLGPGQEIELEAHAVKGIGKTHAKWSPVATAWYRMLPEIVLLEDVEDED 288
DI IA+L PG E++L AVKG+G+ HAK+SPVATA YR+LP+I L +V +D
Sbjct: 189 ------DILIAQLRPGHELDLRLVAVKGLGRDHAKFSPVATATYRLLPQIKLNREVSGKD 242
Query: 289 AEKLVKTCPVNVFDIEDIGSGKKRATVAQPRACTLCRECLRCGEEWEKRVSIRRVKDHFI 348
A L V I++ + A V R + R R + V++ RV+DH+I
Sbjct: 243 AYLLQSCFSPGVIGIDE----NECAYVKDARYDSCSRNVYRY-PQINDSVTLARVRDHYI 297
>gi|322693281|gb|EFY85147.1| DNA-directed RNA polymerases I and III 40 kDa polypeptide
[Metarhizium acridum CQMa 102]
Length = 1842
Score = 174 bits (440), Expect = 8e-41, Method: Composition-based stats.
Identities = 127/348 (36%), Positives = 180/348 (51%), Gaps = 52/348 (14%)
Query: 32 IEFQRTRVQCNLDAPIHTENVMYSGAYASMGVDNSLQLDHFCNNFRVEVIRLTKDDMEFD 91
++ QR V NL+ +V Y G + G D++ LD F F V + + F
Sbjct: 1478 VQEQRNTVGINLETVTDVTSVDYPGHFP--GEDHAYSLDRFRAGFSVNFHQNDANSSSFS 1535
Query: 92 LIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRLGLIPIIVD----PR 147
L+G+DA++ANAFRRILIAE+PT+AIE V I NNTSVIQDEVLAHRLGLIP
Sbjct: 1536 LMGLDASLANAFRRILIAEIPTLAIENVYIENNTSVIQDEVLAHRLGLIPFNGGRDGLKN 1595
Query: 148 LFEYMSENDTSNEK-------NTIVFKLHVLCERGGPRLTVKTNELKWLPNGSELPLETK 200
++ + + + NT+ +L+V C TV + P+ + PL+
Sbjct: 1596 FLKWHKKPEAGEDPYAGCFDWNTVRLELNVTC-------TVNPDA---APDERD-PLKAF 1644
Query: 201 PDSNPSSKPRTY------TSFSSSQDLLPEFSNNPIRPMLDITIARLGPGQEIELEAHAV 254
+++ +K + F S +D + P+ P DI IA+L P Q I L H
Sbjct: 1645 NNAHVYAKDIVFVPTGRQVEFFSGEDAIA-----PVNP--DILIAKLRPRQTINLSMHMH 1697
Query: 255 KGIGKTHAKWSPVATAWYRMLPEIVLLEDVEDEDAEKLVKTCPVNVFDIEDIG------- 307
KGIG HAK+SPVATA YR++P I +L+ + DAEK + P V +E +
Sbjct: 1698 KGIGADHAKFSPVATASYRLMPTIKILKPILGADAEKFARCFPQGVIGLEKVTPAEAKKA 1757
Query: 308 -------SGKKRATVAQPRACTLCRECLRCGEEWEKRVSIRRVKDHFI 348
+G+K+A V P T+ RECLR E+E +V + R +DHFI
Sbjct: 1758 GSGYEGHAGEKKAVVKDPMKDTVSRECLRHA-EFEGKVKLGRRRDHFI 1804
>gi|389624551|ref|XP_003709929.1| DNA-directed RNA polymerase I and III subunit RPAC1 [Magnaporthe
oryzae 70-15]
gi|351649458|gb|EHA57317.1| DNA-directed RNA polymerase I and III subunit RPAC1 [Magnaporthe
oryzae 70-15]
gi|440471601|gb|ELQ40590.1| DNA-directed RNA polymerases I and III subunit RPAC1 [Magnaporthe
oryzae Y34]
gi|440481959|gb|ELQ62489.1| DNA-directed RNA polymerases I and III subunit RPAC1 [Magnaporthe
oryzae P131]
Length = 373
Score = 174 bits (440), Expect = 8e-41, Method: Compositional matrix adjust.
Identities = 124/344 (36%), Positives = 177/344 (51%), Gaps = 52/344 (15%)
Query: 35 QRTRVQCNLDAPIHTENVMYSGAYASMGVDNSLQLDHFCNNFRVEVIRLTKDDMEFDLIG 94
+R V N + +T + Y GA+ G +++ ++ F + ++ + F LIG
Sbjct: 14 RRKLVGINKETVTNTISTDYPGAH--YGEEHAWDVNEFSQHLNIQFHQNDPSLASFSLIG 71
Query: 95 IDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRLGLIPI---------IVD 145
+DA+IANAFRRI+IAE+P++AIE+V I NNTSVIQDEVLA RLGL+P+ +
Sbjct: 72 VDASIANAFRRIMIAEIPSLAIERVFITNNTSVIQDEVLAQRLGLVPLKGSKEGLRKFMK 131
Query: 146 PRLFEYMSENDTSNEKNTIVFKLHVLCERGGPRLTVKTNELKWLPNGSELPLETKPDSNP 205
P D S + NT+ +L+V C R N P E P+
Sbjct: 132 PFKRTETGGFDNSFDFNTVNLRLNVKCTR----------------NPDAKPGENDPNK-A 174
Query: 206 SSKPRTYTS---FSSSQDLLPEFSNN----PIRPMLDITIARLGPGQEIELEAHAVKGIG 258
KP Y S F + FS + P+ P DI IA+L PGQ I+LE HA G G
Sbjct: 175 YIKPNVYASDIEFVPAGQQTDYFSGDGAIVPVNP--DILIAKLRPGQGIDLEMHAHIGYG 232
Query: 259 KTHAKWSPVATAWYRMLPEIVLLEDVEDEDAEKL--------VKTCPVNVFDIEDIGSGK 310
HAK+SPV TA YR++P I +++ + DAEK ++ PV + ++ GSG
Sbjct: 233 WDHAKFSPVCTASYRLMPIIDIVKPIVGADAEKFRDCFPDGVIRLQPVTAAEAKEKGSGY 292
Query: 311 K------RATVAQPRACTLCRECLRCGEEWEKRVSIRRVKDHFI 348
+ +A V P T+ RECLR E+E +V + R +DHFI
Sbjct: 293 EGHKGEMKAVVNDPMRDTVSRECLRHA-EFEGKVKLGRRRDHFI 335
>gi|219121193|ref|XP_002185825.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
gi|209582674|gb|ACI65295.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
Length = 319
Score = 173 bits (438), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 111/284 (39%), Positives = 161/284 (56%), Gaps = 30/284 (10%)
Query: 82 RLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRLGLIP 141
R ++ ++ + + +D + NA RRIL+AE+PT+A+E + + N+S+I DEVL+HRLGLIP
Sbjct: 6 RPSEHELVLEFLHVDTSFVNALRRILLAEVPTVALENIYMWENSSLIHDEVLSHRLGLIP 65
Query: 142 IIVDPRLFEYMSENDTS-NEKNTIVFKLHVLC----ERGGPRLTVKTNELKWLPNGSELP 196
+ +D RL + ++D S ++NT+VF+L V C +G + ++E N ++
Sbjct: 66 LKIDARLLDEQDDDDPSPTDRNTVVFRLGVSCGSDPNKGKAKHKADSHE-----NANDAA 120
Query: 197 LETKPDSNPSSKPRTYTSFSSSQDLL--PEFSN----NPIRPMLD-ITIARLGPGQEIEL 249
E D P YT S+DL+ P+ I M D I IA+L PGQ IEL
Sbjct: 121 -EADQDERP------YTKHVYSKDLVWVPQGDQEERLQDICAMHDDILIAKLRPGQSIEL 173
Query: 250 EAHAVKGIGKTHAKWSPVATAWYRMLPEIVLLEDVEDEDAEKLVKTCPVNVFDI-----E 304
E H G+GK HAK+SPVATA YR++P I LL DV DE A++LV VF+I
Sbjct: 174 EVHGRVGVGKDHAKFSPVATASYRLMPHIELLRDVYDEVADELVHVYEPGVFEIVPTDAT 233
Query: 305 DIGSGKKRATVAQPRACTLCRECLRCGEEWEKRVSIRRVKDHFI 348
D ++A V P ACT+ R +R E + V + R+ DHFI
Sbjct: 234 DPAGTSRKARVCNPYACTMSRNYMR-HTELAQAVRMSRIPDHFI 276
>gi|365982085|ref|XP_003667876.1| hypothetical protein NDAI_0A04770 [Naumovozyma dairenensis CBS 421]
gi|343766642|emb|CCD22633.1| hypothetical protein NDAI_0A04770 [Naumovozyma dairenensis CBS 421]
Length = 335
Score = 173 bits (438), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 114/311 (36%), Positives = 168/311 (54%), Gaps = 52/311 (16%)
Query: 57 AYASMGVDNSLQLDHFCNNFRVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAI 116
++S G N+ ++ F F V++ L++ + FDLI ID ++ANAFRRI+I+E+P++A
Sbjct: 22 GFSSDG-SNAWDVEKFKETFDVQITSLSEREANFDLINIDTSMANAFRRIMISEVPSVAA 80
Query: 117 EKVLIANNTSVIQDEVLAHRLGLIPIIVDPRLFEY----MSENDTSNEKNTIVFKLHVLC 172
E V NTSVIQDEVLAHR+G+IP+ VDP + + +SE + + NT+V L++ C
Sbjct: 81 EYVYFLTNTSVIQDEVLAHRIGMIPLKVDPDMLSWIDTSLSEEEKFTDDNTVVMSLNIKC 140
Query: 173 ERG--------GPRL-----TVKTNELKWLPNGSELPLETKPDSNPSSKPRTYTSFSSSQ 219
R P++ +V +LK+ P G + +ET
Sbjct: 141 TRNLNAPKDCTDPKILYHNSSVYAKDLKFEPQGKQ--VET-------------------- 178
Query: 220 DLLPEFSNNPIRPM-LDITIARLGPGQEIELEAHAVKGIGKTHAKWSPVATAWYRMLPEI 278
F+ P+ P DI +A+L P QEI L H + G+G HAK+SPV+TA YR+LP I
Sbjct: 179 -----FAKCPVVPSDPDILLAKLRPDQEISLRVHCILGVGGDHAKFSPVSTASYRLLPHI 233
Query: 279 VLLEDVEDEDAEKLVKTCPVNVFDI-EDIGSGKKRATVAQPRACTLCRECLRCGEEWEKR 337
+L+ + E A K K V I E+ G A V R T+ RE LR EE+ +
Sbjct: 234 NILKPITGEQAIKFQKCFLPGVIGINEETG----EAYVKDARKDTVSREVLR-HEEFNDK 288
Query: 338 VSIRRVKDHFI 348
V + R++DHFI
Sbjct: 289 VKLGRIRDHFI 299
>gi|159116466|ref|XP_001708454.1| DNA-directed RNA polymerase subunit D [Giardia lamblia ATCC 50803]
gi|157436566|gb|EDO80780.1| DNA-directed RNA polymerase subunit D [Giardia lamblia ATCC 50803]
Length = 350
Score = 172 bits (437), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 115/316 (36%), Positives = 161/316 (50%), Gaps = 56/316 (17%)
Query: 64 DNSLQLDHFCNNFRVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIAN 123
D L F N + + D FD+I + IAN RRI++ E+PTMAI+ V++
Sbjct: 19 DMVTDLSAFQNRLEYVIWKDECDTFSFDVINLSPVIANTIRRIILDEVPTMAIDTVVVHE 78
Query: 124 NTSVIQDEVLAHRLGLIPIIVDPRLFEYMSENDTSNEKNTIVFKLHVLC----------E 173
N+S+I DE+ +HRLGL+P+ +DPRLFEY + D +E+NT+VFKL V E
Sbjct: 79 NSSIIADEIFSHRLGLVPMNIDPRLFEYHEDGDKIHERNTVVFKLDVTAPATYSSSFNDE 138
Query: 174 RGGPRLTVKTNELKWLPNGSE--LPLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIR 231
G V + ++ W+P G + L+ + ++ SS P P+
Sbjct: 139 EPG-WFYVYSRDIYWVPIGGQKDWLLKQEVRADMSSLPA------------------PLD 179
Query: 232 PMLDITIARLGPGQEIELEAHAVKGIGKTHAKWSPVATAWYRMLPEIVLLEDV------E 285
P DI +A+L PGQ I E + KGIG+ HAK+ PV TAWY+M +I L +D
Sbjct: 180 P--DILLAKLAPGQRIFCEIYCHKGIGRMHAKFQPVGTAWYKMKTQIALDKDALLQHPEV 237
Query: 286 DEDAEKLV----KTCPVNVF-------DIEDIGSGKKRATVAQPRACTLCRECLRCGEEW 334
+ D +KLV K CPVNVF DIED T ACTLCREC+ +
Sbjct: 238 NGDVDKLVTKLHKVCPVNVFADVTRQLDIEDFSVHHPDRT----EACTLCRECIAAFTDE 293
Query: 335 EKRVSIR--RVKDHFI 348
+ + IR VK H +
Sbjct: 294 QNQCGIRLELVKTHLV 309
>gi|440293650|gb|ELP86743.1| DNA-directed RNA polymerase I and III subunit RPAC1, putative
[Entamoeba invadens IP1]
Length = 289
Score = 172 bits (437), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 104/277 (37%), Positives = 157/277 (56%), Gaps = 42/277 (15%)
Query: 78 VEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRL 137
+E I T + + FDL +D ++AN+ RRI+++E+PTMAIE V++ NTS I DE+LAHRL
Sbjct: 7 IEFISTTPEKVVFDLTNVDVSVANSLRRIMLSEVPTMAIEMVVMEVNTSCIPDEMLAHRL 66
Query: 138 GLIPIIVDPRLFEYMSEND--TSNEKNTIVFKLHVLC---ERGGPRLTVKTNELKWLPNG 192
GLIPI DPR F++ E+NT+VF + V+ ++ V ++++ W P G
Sbjct: 67 GLIPIYADPRKFQFAPNRAFLEPTEENTLVFHMDVINNTKDKTAVHKNVYSSDIIWEPQG 126
Query: 193 SELPLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPML-DITIARLGPGQEIELEA 251
+ ET F +PIR +L DI IA L GQ+I+ +
Sbjct: 127 DQ---ETT------------------------FQKDPIRVVLGDILIAELAQGQQIKCKL 159
Query: 252 HAVKGIGKTHAKWSPVATAWYRMLPEIVLLEDVEDEDAEKLVKTCPVNVFDIEDIGSGKK 311
+ KG+G+ HAK+SPV TA YRM+P+I + + A+++ + CP+NV+DIED
Sbjct: 160 YCCKGLGQDHAKFSPVCTAAYRMMPKIEVT--AVGKMAKEIKECCPLNVYDIED-----N 212
Query: 312 RATVAQPRACTLCRECLRCGEEWEKRVSIRRVKDHFI 348
V PR C +CREC+R ++ ++ V + R HFI
Sbjct: 213 ELVVKNPRNCKMCRECIR--DQRQEFVKLGREDSHFI 247
>gi|358391580|gb|EHK40984.1| hypothetical protein TRIATDRAFT_28889 [Trichoderma atroviride IMI
206040]
Length = 377
Score = 172 bits (436), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 125/344 (36%), Positives = 169/344 (49%), Gaps = 46/344 (13%)
Query: 33 EFQRTRVQCNLDAPIHTENVMYSGAYASMGVDNSLQLDHFCNNFRVEVIRLTKDDMEFDL 92
+R V N + + + + G + G D++ ++HF + F ++ R +D F L
Sbjct: 14 HLRRNTVGINKETVSNVSSTDFPGHFP--GEDHAFSIEHFQSAFSIQFHRNEANDASFSL 71
Query: 93 IGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRLGLIPI---------- 142
IGIDA++ANAFRRILIAE+PT+AIE V I NNTSVIQDEVLAHRLGL+P
Sbjct: 72 IGIDASLANAFRRILIAEIPTLAIEDVFIENNTSVIQDEVLAHRLGLVPFNGGREGIHNF 131
Query: 143 ---IVDPRLFEYMSENDTSNEKNTIVFKLHVLCERGGPRLTVKTNELKWLPNGSELPLET 199
P E N S + NT+ +L+V C + + LK + +
Sbjct: 132 LKWYKKPAAGEDQYAN--SFDWNTVRLELNVTCTVNQDAAPTENDPLKAYHHAHVYARDI 189
Query: 200 KPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPML-DITIARLGPGQEIELEAHAVKGIG 258
P+ + Y S N IRP+ DI IA+L P Q I L H KGIG
Sbjct: 190 V--FAPTGRQAEYFS-----------GENAIRPVNPDILIAKLRPKQTINLAMHMHKGIG 236
Query: 259 KTHAKWSPVATAWYRMLPEIVLLEDVEDEDAEKLVKTCPVNVF--------DIEDIGSGK 310
H+K+SPVATA YR+LP I + + DAEK K P V D+ GSG
Sbjct: 237 ADHSKFSPVATASYRLLPLIHITRPILGADAEKFQKCFPEGVIGLEPVTREDVSKAGSGY 296
Query: 311 K------RATVAQPRACTLCRECLRCGEEWEKRVSIRRVKDHFI 348
+ +A V T+ RE LR E+E +V + R +DHFI
Sbjct: 297 EGHLGEVKAVVKDSMKDTVSREALRHA-EFEGKVKLGRRRDHFI 339
>gi|302655859|ref|XP_003019711.1| hypothetical protein TRV_06253 [Trichophyton verrucosum HKI 0517]
gi|291183453|gb|EFE39066.1| hypothetical protein TRV_06253 [Trichophyton verrucosum HKI 0517]
Length = 388
Score = 172 bits (435), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 118/293 (40%), Positives = 159/293 (54%), Gaps = 50/293 (17%)
Query: 87 DMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRLGLIPIIVDP 146
+ F LIG+DAAIANAFRRIL+AE+P +AIE V I NNTSVIQDEVLAHRLGLIP+
Sbjct: 71 EASFSLIGVDAAIANAFRRILLAEIPALAIEYVYIQNNTSVIQDEVLAHRLGLIPLKGSL 130
Query: 147 ------RLFEYMSEND-----TSNEKNTIVFKLHVLCERGGPRLTVKTNELKWLPNGSEL 195
R F+ E D T + NTIV +L C + N +
Sbjct: 131 EGLNWLRWFKIPKEGDPDSGSTHEDSNTIVLRLVKECTK----------------NRNAA 174
Query: 196 PLETKP-----DSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPM-LDITIARLGPGQEIEL 249
P E P +++ +K + + + I+P DI +A+L PGQ+I++
Sbjct: 175 PDEEDPTVLYNNAHIYAKDLVFEPQGRQEKYF--HGDGVIQPCNPDILLAKLRPGQKIDI 232
Query: 250 EAHAVKGIGKTHAKWSPVATAWYRMLPEIVLLEDVEDEDAEKLVKTCPVNVFDIED---- 305
E H +KGIG HAK+SPVATA YR+LP+I +L + DA K P V IE+
Sbjct: 233 EMHCIKGIGADHAKFSPVATASYRLLPDIKILRPILGNDAIKFASCFPRGVIGIENVTAA 292
Query: 306 ----IGS------GKKRATVAQPRACTLCRECLRCGEEWEKRVSIRRVKDHFI 348
+GS G+K+A V P T+ RECLR +E++ +V + RV+DHFI
Sbjct: 293 EAAQVGSGYEGKEGEKKAVVVDPFKDTVSRECLR-HDEFKDKVKLGRVRDHFI 344
>gi|302511159|ref|XP_003017531.1| hypothetical protein ARB_04413 [Arthroderma benhamiae CBS 112371]
gi|291181102|gb|EFE36886.1| hypothetical protein ARB_04413 [Arthroderma benhamiae CBS 112371]
Length = 362
Score = 171 bits (434), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 117/293 (39%), Positives = 158/293 (53%), Gaps = 50/293 (17%)
Query: 87 DMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRLGLIPIIVDP 146
+ F LIG+DAAIANAFRRIL+AE+P +AIE V I NNTSVIQDEVLAHRLGLIP+
Sbjct: 45 EASFSLIGVDAAIANAFRRILLAEIPALAIEYVYIQNNTSVIQDEVLAHRLGLIPLKGSL 104
Query: 147 ------RLFEYMSEND-----TSNEKNTIVFKLHVLCERGGPRLTVKTNELKWLPNGSEL 195
R F+ E D T + NTIV +L C + N +
Sbjct: 105 EGLNWLRWFKIPKEGDPDSGSTHEDSNTIVLRLVKECTK----------------NRNSA 148
Query: 196 PLETKP-----DSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPM-LDITIARLGPGQEIEL 249
P E P +++ +K + + + I+P D +A+L PGQ+I++
Sbjct: 149 PDEEDPTVLYNNAHIYAKDLVFEPQGRQEKYF--HGDGVIQPCNPDTLLAKLRPGQKIDI 206
Query: 250 EAHAVKGIGKTHAKWSPVATAWYRMLPEIVLLEDVEDEDAEKLVKTCPVNVFDIED---- 305
E H +KGIG HAK+SPVATA YR+LP+I +L + DA K P V IE+
Sbjct: 207 EMHCIKGIGADHAKFSPVATASYRLLPDIKILRPILGNDAIKFASCFPRGVIGIENVTAA 266
Query: 306 ----IGS------GKKRATVAQPRACTLCRECLRCGEEWEKRVSIRRVKDHFI 348
+GS G+K+A V P T+ RECLR +E++ +V + RV+DHFI
Sbjct: 267 EAAQVGSGYEGKEGEKKAVVVDPFKDTVSRECLR-HDEFKDKVKLGRVRDHFI 318
>gi|402582559|gb|EJW76504.1| RNA polymerase Rpb3/Rpb11 dimerization domain-containing protein
[Wuchereria bancrofti]
Length = 299
Score = 171 bits (433), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 107/288 (37%), Positives = 150/288 (52%), Gaps = 59/288 (20%)
Query: 88 MEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRLGLIPIIVDPR 147
+EFDL+G++A IANA RR+LIAELPT+AIEKV + NTS+I DEVL+HR GL+PI DPR
Sbjct: 3 LEFDLVGVEAPIANAIRRVLIAELPTLAIEKVYLYQNTSIIPDEVLSHRFGLLPIKADPR 62
Query: 148 LFEY--------------MSENDTSNEKNTIVFKLHVLCERGGPRLT------------- 180
LF+ +E + ++F++ V C R L
Sbjct: 63 LFKMPLTPVIGIDESGVDCNEEPAGDPTRNLIFEIKVTCSRNPNALKTATNPKEIYENAF 122
Query: 181 VKTNELKWLPNGSELPLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPMLDITIAR 240
V +N KW+P G + S+S P ++ DI +A+
Sbjct: 123 VYSNSFKWIPIGDQ---------------------STSLPYPPAMVHD------DILVAQ 155
Query: 241 LGPGQEIELEAHAVKGIGKTHAKWSPVATAWYRMLPEIVLLEDVEDEDAEKLVKTCPVNV 300
L PGQEIE H +KG+G+ HAK+SPVATA YR+LP+IVL DA+++ + V
Sbjct: 156 LRPGQEIEARCHCLKGLGRDHAKFSPVATASYRLLPQIVLKRKFSGADAQRIKSSFSEGV 215
Query: 301 FDIEDIGSGKKRATVAQPRACTLCRECLRCGEEWEKRVSIRRVKDHFI 348
+I+ G A V R+ T R LR E+ + + + R+KDHFI
Sbjct: 216 IEIDADGV----AIVKDARSDTCSRNILR-HEDLAEYIELSRIKDHFI 258
>gi|253744733|gb|EET00889.1| DNA-directed RNA polymerase subunit D [Giardia intestinalis ATCC
50581]
Length = 350
Score = 171 bits (432), Expect = 6e-40, Method: Compositional matrix adjust.
Identities = 105/291 (36%), Positives = 152/291 (52%), Gaps = 50/291 (17%)
Query: 86 DDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRLGLIPIIVD 145
D FD+I + IAN RRI++ E+PT+AI+ V++ N+S+I DE+ +HRLGL+P+ +D
Sbjct: 41 DLFSFDVINLSPVIANTIRRIILDEVPTIAIDTVVVHENSSIIADEIFSHRLGLVPMNID 100
Query: 146 PRLFEYMSENDTSNEKNTIVFKLHVLC--------ERGGPR-LTVKTNELKWLPNGSELP 196
PRLFEY + D +E+NT+VFKL V + G PR V + ++ W+P G +
Sbjct: 101 PRLFEYHEDGDKIHERNTVVFKLDVTAPATYPGSFQDGEPRWFYVYSRDIHWVPIGGQ-- 158
Query: 197 LETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPMLDITIARLGPGQEIELEAHAVKG 256
++ Q++ P S+ P DI +A+L PGQ I E + KG
Sbjct: 159 ----------------KNWLPEQEVRPGTSSLPAPLDPDILLAKLAPGQRIFCEIYCHKG 202
Query: 257 IGKTHAKWSPVATAWYRMLPEIVLLEDV----------EDEDAEKLVKTCPVNVF----- 301
+G THAK+ PV TAWY+M ++ L +D + EKL K CPV VF
Sbjct: 203 VGHTHAKFQPVGTAWYKMKTQVSLDKDALLQHPEIGGNAGKLVEKLHKVCPVGVFAGVDR 262
Query: 302 --DIEDIGSGKKRATVAQPRACTLCRECLR--CGEEWEKRVSIRRVKDHFI 348
DIED + ACTLCREC+ E+ + V I +K H +
Sbjct: 263 QLDIEDFSTRHPERV----EACTLCRECIAGFTDEQSQCGVRIELIKTHLV 309
>gi|406606450|emb|CCH42224.1| DNA-directed RNA polymerase [Wickerhamomyces ciferrii]
Length = 295
Score = 171 bits (432), Expect = 6e-40, Method: Compositional matrix adjust.
Identities = 108/258 (41%), Positives = 144/258 (55%), Gaps = 26/258 (10%)
Query: 96 DAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRLGLIPIIVDPRLFEY---- 151
D +I+NAFRRI+I+E+P++A E+V I NNTSVIQDEVLAHR+GLIP+ +DP L +
Sbjct: 23 DTSISNAFRRIMISEVPSVAAEQVYIFNNTSVIQDEVLAHRIGLIPLKIDPDLLNWVDNS 82
Query: 152 MSENDTSNEKNTIVFKLHVLCERGGPRLTVKTNELKWLPNGSELPLETKPDSNPSSKPRT 211
+ E+D + NT+V L V C + PN + + K SS
Sbjct: 83 VDESDKFTDANTVVMTLDVSCTKN--------------PNAPKNSTDPKELYRNSSIYAR 128
Query: 212 YTSFSSSQDLLPEFSNNPIRPM-LDITIARLGPGQEIELEAHAVKGIGKTHAKWSPVATA 270
F + L F NPI P DI +A+L PGQEI L H V GIG HAK+SPV+TA
Sbjct: 129 DLKFEPQGNQLENFK-NPIEPADPDILLAKLRPGQEISLRIHCVLGIGSDHAKFSPVSTA 187
Query: 271 WYRMLPEIVLLEDVEDEDAEKLVKTCPVNVFDIEDIGSGKKRATVAQPRACTLCRECLRC 330
YR+LP I ++E + +DA+K K P V IG A V R T+ RE LR
Sbjct: 188 SYRLLPTIDIIEPIRGDDAKKFQKCFPTGV-----IGINNGEAFVKDSRRDTVSREVLR- 241
Query: 331 GEEWEKRVSIRRVKDHFI 348
EE+ +V + R ++HFI
Sbjct: 242 HEEFNGKVKLGRKRNHFI 259
>gi|156061627|ref|XP_001596736.1| hypothetical protein SS1G_02959 [Sclerotinia sclerotiorum 1980]
gi|154700360|gb|EDO00099.1| hypothetical protein SS1G_02959 [Sclerotinia sclerotiorum 1980
UF-70]
Length = 387
Score = 171 bits (432), Expect = 7e-40, Method: Compositional matrix adjust.
Identities = 117/289 (40%), Positives = 157/289 (54%), Gaps = 45/289 (15%)
Query: 90 FDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRLGLIPIIVDPR-L 148
F L+GIDA++ANAFRRILIAE+PT+AIE + NNTSVIQDEVL RLGL+P L
Sbjct: 76 FSLVGIDASVANAFRRILIAEIPTLAIEYCFVKNNTSVIQDEVLCGRLGLVPFKGGKEGL 135
Query: 149 FEYMS-------------ENDTSNEKNTIVFKLHVLCERGGPRLTVKTNELKWLPNGSEL 195
++M + S + NTI L + C R K G
Sbjct: 136 LDFMKWFQKPEEETPEEERHLGSFDHNTIQLSLKIECTRN-----------KEAAPGEAD 184
Query: 196 PLETKPDSNPSSKPRTYTSFSSSQDLLPEFSN-NPIR-PMLDITIARLGPGQEIELEAHA 253
P + +++ +K + F L FS N IR P DI IA++ PGQ I+++ HA
Sbjct: 185 PRKIYHNAHVYAKDIEFKPFGRQ---LEYFSGENAIRSPNPDILIAKMRPGQVIDIDMHA 241
Query: 254 VKGIGKTHAKWSPVATAWYRMLPEIVLLEDVEDEDAEKLVKTCPVNVFDIEDI------- 306
+KGIG+ HAK+SPVATA YR+LP I + + + +DAEK K P V IE +
Sbjct: 242 IKGIGRDHAKFSPVATASYRLLPVINITQPILGKDAEKFKKCFPPGVIGIEKVTAKEAKI 301
Query: 307 -GS------GKKRATVAQPRACTLCRECLRCGEEWEKRVSIRRVKDHFI 348
GS G+K+A V T+ RECLR EE++ +V + RV+DHFI
Sbjct: 302 KGSGYEGHEGEKKAVVVDAMRDTVSRECLR-HEEFQGKVKLGRVRDHFI 349
>gi|83282536|ref|XP_729812.1| DNA-directed RNA polymerases I and III 40 kDa polypeptide
[Plasmodium yoelii yoelii 17XNL]
gi|23488700|gb|EAA21377.1| DNA-directed RNA polymerases i and iii 40 kDa polypeptide
[Plasmodium yoelii yoelii]
Length = 286
Score = 170 bits (431), Expect = 8e-40, Method: Compositional matrix adjust.
Identities = 103/281 (36%), Positives = 145/281 (51%), Gaps = 43/281 (15%)
Query: 78 VEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRL 137
+++I+ ++ + ++ ++ +IANA RRI+I+E+PT+AIEKV I NT VI DE+L HRL
Sbjct: 1 MKIIKNEENLLILEIKNLNVSIANALRRIMISEVPTIAIEKVNIFQNTGVIADEILCHRL 60
Query: 138 GLIPIIVDPRLFEYMSENDTSNEKNTIVFKLHVLCERGGPRL-------TVKTNELKWLP 190
GLIP D L Y + N N FKLHV C + + +LKW P
Sbjct: 61 GLIPFKFDADLLNYKDPYEKYNNLNCFCFKLHVKCNSINNNKNGNENYQCIYSKDLKWCP 120
Query: 191 NGSELPLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPMLD-ITIARLGPGQEIEL 249
E +F NNP + + D I I +LG GQEIEL
Sbjct: 121 LNEEQK--------------------------KKFENNPPKVVEDNILITKLGSGQEIEL 154
Query: 250 EAHAVKGIGKTHAKWSPVATAWYRMLPEIVL--LEDVEDEDAEKLVKTCPVNVFDIEDIG 307
KGIGKTHAKWSPV TA Y+M P E + + + LV CP NVFDIE+ G
Sbjct: 155 ICFLEKGIGKTHAKWSPVCTAVYKMFPSFNFDVHEKFTNYEKKDLVTICPKNVFDIEESG 214
Query: 308 SGKKRATVAQPRACTLCRECLRCGEEWEKRVSIRRVKDHFI 348
+ P C+ CR C+ E++ ++++ ++ K+HFI
Sbjct: 215 N----LVAKNPLDCSSCRACI---EKYPQKITFQKTKNHFI 248
>gi|402224041|gb|EJU04104.1| RBP11-like subunit of RNA polymerase [Dacryopinax sp. DJM-731 SS1]
Length = 362
Score = 170 bits (430), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 111/328 (33%), Positives = 168/328 (51%), Gaps = 25/328 (7%)
Query: 24 VPQKLPPH--IEFQRTRVQCNLDAPIHTENVMYSGAYASMGVDNSLQLDHFCNNFRVEVI 81
+P+++ PH + RV H + Y G + G + L+ F + +V+V
Sbjct: 1 MPEEIHPHRLVHIASERVS-------HVSSTDYPGHWP--GESYTWDLEFFRKSLQVDVK 51
Query: 82 RLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRLGLIP 141
RLT ++FDL+G DAAIANA RRI+I E+ T+A+E V + NTSV+QDEVLA RLGL+P
Sbjct: 52 RLTPTTIDFDLVGTDAAIANALRRIMIGEVETIAVENVWVWQNTSVMQDEVLASRLGLVP 111
Query: 142 IIVDPRLFEYMSENDTSNEKNTIVFKLHVLC-ERGGPRLTVKTNELKWLPNGSELPLETK 200
+ ++P E + N + NTI F++ V C R P P GS P E
Sbjct: 112 LRINPARLESWTPNAVPTDANTISFEVQVTCTSRPFP------------PRGSTDPSELY 159
Query: 201 PDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPMLDITIARLGPGQEIELEAHAVKGIGKT 260
+S+ + + + L ++ P DI + +L PGQE+ +E H VK G+
Sbjct: 160 ENSSIYASHLRWKPVGAQAALPDWLADPPSVAKPDIVLVKLRPGQELNIEMHCVKSCGRD 219
Query: 261 HAKWSPVATAWYRMLPEIVLLEDVEDEDAEKLVKTCPVNVFDIEDIGSGKKRATVAQPRA 320
HAK+SPVATA YR+LP I +L+ + ++ K +++ V + V R
Sbjct: 220 HAKYSPVATATYRLLPYIQILKPIPEQLQAKFMQSFSPGVMGKRRNKQEEWEVFVKDARK 279
Query: 321 CTLCRECLRCGEEWEKRVSIRRVKDHFI 348
T+ R E+E V + RV+DHF+
Sbjct: 280 DTMSRNVF-LYPEFEGAVKLTRVRDHFL 306
>gi|400602680|gb|EJP70282.1| RNA polymerase Rpb3/RpoA insert domain-containing protein
[Beauveria bassiana ARSEF 2860]
Length = 384
Score = 169 bits (428), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 128/340 (37%), Positives = 170/340 (50%), Gaps = 34/340 (10%)
Query: 33 EFQRTR-VQCNLDAPIHTENVMYSGAYASMGVDNSLQLDHFCNNFRVEVIRLTKDDMEFD 91
E +R R V N + + ++ Y G G D + ++ F ++F V + + D F
Sbjct: 17 ELERRRTVNINKETVSNISSIEYPGHVP--GEDAAFTIERFQSDFSVHFHQNEQFDASFS 74
Query: 92 LIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRLGLIPIIVDPR-LFE 150
L+G+DA++ANAFRRI+IAE+PT+AIE V I NNTSVIQDEVLAHRLGLIP L +
Sbjct: 75 LVGLDASLANAFRRIMIAEIPTLAIENVFIENNTSVIQDEVLAHRLGLIPFKGGREGLLD 134
Query: 151 YMSENDTSNEKNTIVFKLHVLCERGGPRLTVKTNELK--WLPNGSELPLETKPDSNPSSK 208
++ ++K T GG EL N P ET P +
Sbjct: 135 FLK----WHKKPTDGDDDDNDDSAGGFDFDTVRLELNVTCTANADAAPGETDP-TKAYHH 189
Query: 209 PRTYTS---FSSSQDLLPEFSN----NPIRPMLDITIARLGPGQEIELEAHAVKGIGKTH 261
Y FS + FS P+ P DI IA++ P Q I L H KGIG H
Sbjct: 190 AHVYARDIVFSPMGEQERYFSGADAIAPVNP--DILIAKMRPKQTINLSMHMHKGIGSDH 247
Query: 262 AKWSPVATAWYRMLPEIVLLEDVEDEDAEKLVKTCPVNVFDIEDI-------GS------ 308
AK+SPVATA YR+LP I +L+ + DAEK P V ++ I GS
Sbjct: 248 AKFSPVATASYRLLPTIKILKPIVGVDAEKFQGCFPQGVIGLQKITKKDAVPGSGLEEHV 307
Query: 309 GKKRATVAQPRACTLCRECLRCGEEWEKRVSIRRVKDHFI 348
G+ RA V T+ RECLR E+E +V + R +DHFI
Sbjct: 308 GEMRAVVEDASKDTVSRECLRH-PEFEGKVKLGRRRDHFI 346
>gi|158293560|ref|XP_314897.4| AGAP008771-PA [Anopheles gambiae str. PEST]
gi|157016767|gb|EAA10097.5| AGAP008771-PA [Anopheles gambiae str. PEST]
Length = 261
Score = 169 bits (427), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 96/244 (39%), Positives = 139/244 (56%), Gaps = 42/244 (17%)
Query: 72 FCNNFRVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDE 131
F ++ V+R ++++EFD+IG+ AIAN FRR++++E+P+MAIEKV I NNTS+IQDE
Sbjct: 2 FKRKLQIVVVRYDENELEFDMIGVSCAIANVFRRLMLSEVPSMAIEKVHIYNNTSIIQDE 61
Query: 132 VLAHRLGLIPIIVDPRLFEYMS-ENDTSNEKNTIVFKLHVLCERGGPRLTVKTN------ 184
VLAHRLGLIP+ DPR+FEY + E D + +T+ F+L V C R T TN
Sbjct: 62 VLAHRLGLIPLRADPRMFEYKANETDPPSALDTLEFELKVKCTRKNKDSTEVTNNENMYK 121
Query: 185 -------ELKWLPNGSELPLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPMLDIT 237
++KW+P G++ + T+ P DI
Sbjct: 122 NHSIYSGQIKWVPIGNQATIYTEAAVGPIDD--------------------------DIL 155
Query: 238 IARLGPGQEIELEAHAVKGIGKTHAKWSPVATAWYRMLPEIVLLEDVEDEDAEKLVKTCP 297
I+++ PG E +++ AVKG+GK HAK+SPVAT YR+LP+I L +DA +C
Sbjct: 156 ISKMRPGHEFDIKLFAVKGVGKDHAKFSPVATVSYRLLPDIKLNRPAYVKDAR--YDSCS 213
Query: 298 VNVF 301
NV+
Sbjct: 214 RNVY 217
>gi|301095579|ref|XP_002896889.1| DNA-directed RNA polymerases I and III 40 kDa polypeptide
[Phytophthora infestans T30-4]
gi|262108536|gb|EEY66588.1| DNA-directed RNA polymerases I and III 40 kDa polypeptide
[Phytophthora infestans T30-4]
Length = 304
Score = 169 bits (427), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 114/320 (35%), Positives = 160/320 (50%), Gaps = 87/320 (27%)
Query: 39 VQCNLDAPIHTENVMYSGAYASMGVDNSLQLDHFCNNFRVEVIRLTKDDMEFDLIGIDAA 98
V+ DAP H +V +Y+ ++ +V++ LT D++ FDLIG
Sbjct: 8 VRVGQDAP-HQPDVESESSYSF--------VEQSKRQVKVKIQSLTDDEIVFDLIG---- 54
Query: 99 IANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRLGLIPIIVDPRLFEYMSENDTS 158
V I NN+S+IQDEVLAHRLGLIP+ +
Sbjct: 55 -------------------HVYIWNNSSIIQDEVLAHRLGLIPL--------------NA 81
Query: 159 NEKNTIVFKLHVLCE---------RGGPRLTVKTNELKWLPNGSELPLETKPDSNPSSKP 209
++NTIVFKL V C+ +V + +L+W+P G++
Sbjct: 82 TDENTIVFKLDVTCKFDPEHPKDPTKAIHSSVYSRDLEWVPQGNQ--------------- 126
Query: 210 RTYTSFSSSQDLLPEFSNNPIRPML-DITIARLGPGQEIELEAHAVKGIGKTHAKWSPVA 268
E IRP+ DI +A+L PGQ I LEAH KG+GK HAK+SPVA
Sbjct: 127 --------------EERFGSIRPVHEDILMAKLRPGQSIALEAHCRKGVGKDHAKFSPVA 172
Query: 269 TAWYRMLPEIVLLEDVEDEDAEKLVKTCPVNVFDIEDIGSGKKRATVAQPRACTLCRECL 328
TA YR++P++ L+E VE DA++LV+ C + +FDIEDIG G A V RACT+CR C+
Sbjct: 173 TASYRLMPKVELMEKVEGTDAKRLVEECHIGLFDIEDIG-GVPTAVVKDQRACTMCRNCI 231
Query: 329 RCGEEWEKRVSIRRVKDHFI 348
R W +++ + R DHFI
Sbjct: 232 R-EPSWNEKIRLGRQSDHFI 250
>gi|408400667|gb|EKJ79744.1| hypothetical protein FPSE_00024 [Fusarium pseudograminearum CS3096]
Length = 381
Score = 168 bits (425), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 123/339 (36%), Positives = 169/339 (49%), Gaps = 40/339 (11%)
Query: 35 QRTRVQCNLDAPIHTENVMYSGAYASMGVDNSLQLDHFCNNFRVEVIRLTKDDMEFDLIG 94
+R V N + + + Y G + G DN LD F + F V + + F L+G
Sbjct: 20 RRQTVGINKETVTNISSTDYPGHHP--GEDNEYTLDRFRDAFSVNFHQNDQFLSSFSLVG 77
Query: 95 IDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRLGLIPIIVD----PRLFE 150
IDA++ANAFRRIL++E+PT+AIE V I NNTSVIQDEVLAHRLGLIP +
Sbjct: 78 IDASLANAFRRILLSEIPTLAIENVYIENNTSVIQDEVLAHRLGLIPFKGGREGLHNFLK 137
Query: 151 YMSENDTSNEK-------NTIVFKLHVLCERGGPRLTVKTNELKWLPNGSELPLETKPDS 203
+ + + ++ NT+ +L+V C + + LK N +
Sbjct: 138 WHKKPEAGDDPYAGCFDWNTVRLELNVTCTVNEEASPAENDPLKAYHNAHVYARDIV--F 195
Query: 204 NPSSKPRTYTSFSSSQDLLPEFSNNPIRPMLDITIARLGPGQEIELEAHAVKGIGKTHAK 263
P+ + Y FS + P NP DI IA+L P Q I L H KGIG HAK
Sbjct: 196 VPTGRQAEY--FSGENAIAP---TNP-----DILIAKLRPRQTINLAMHMHKGIGSDHAK 245
Query: 264 WSPVATAWYRMLPEIVLLEDVEDEDAEKLVKTCPVNVFDIEDI--------GS------G 309
+SPVATA YR+LP I + + + DAEK K P V +E + GS G
Sbjct: 246 FSPVATASYRLLPTITITQPIMGADAEKFAKCFPKGVIGLEKVTAEDAAKTGSGYEGHKG 305
Query: 310 KKRATVAQPRACTLCRECLRCGEEWEKRVSIRRVKDHFI 348
+ +A V T+ RE LR EE++ +V + R +DHFI
Sbjct: 306 ETKAVVVDAMKDTVSREALRH-EEFQGKVKLGRRRDHFI 343
>gi|340520524|gb|EGR50760.1| predicted protein [Trichoderma reesei QM6a]
Length = 377
Score = 167 bits (424), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 132/348 (37%), Positives = 174/348 (50%), Gaps = 54/348 (15%)
Query: 33 EFQRTRVQCNLDAPIHTENVMYSGAYASMGVDNSLQLDHFCNNFRVEVIRLTKDDMEFDL 92
+ +R V N + + + + G + G D++ +D F + F V+ R +D F L
Sbjct: 14 QLRRNTVGINKETVSNVSSTDFPGHFP--GEDHAFSIDRFKSAFSVQFHRNEPNDASFSL 71
Query: 93 IGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRLGLIPI---------- 142
+GIDA++ANAFRRILIAE+PT+AIE V I NNTSVIQDEVLAHRLGLIP
Sbjct: 72 VGIDASLANAFRRILIAEIPTLAIEDVYIENNTSVIQDEVLAHRLGLIPFNGGREGIHNF 131
Query: 143 ---IVDPRLFEYMSENDTSNEKNTIVFKLHVLCERGGPRLTVKTNELKWLPNGSELPLET 199
P E N S + NT+ +L+V C TV P+ S P ET
Sbjct: 132 LKWYKKPEAGEDPYAN--SFDWNTVRLELNVTC-------TVN-------PDAS--PTET 173
Query: 200 KPDSNPSSKPRTYTS---FSSSQDLLPEFSN-NPIRPM-LDITIARLGPGQEIELEAHAV 254
P + Y F + + FS N I P+ DI IA+L P Q I L H
Sbjct: 174 DP-LKAYNHAHVYAKDIVFVPTGRQVEYFSGENAIAPVNPDILIAKLRPKQSINLAMHMH 232
Query: 255 KGIGKTHAKWSPVATAWYRMLPEIVLLEDVEDEDAEKLVKTCPVNVFDIEDI-------- 306
KGIG H+K+SPVATA YR+LP I + + DAEK + P V +E I
Sbjct: 233 KGIGADHSKFSPVATASYRLLPLINITRPIIGADAEKFQRCFPEGVIGLEKISREEASRP 292
Query: 307 GSGKK------RATVAQPRACTLCRECLRCGEEWEKRVSIRRVKDHFI 348
GSG + +A V T+ RE LR E+E +V + R +DHFI
Sbjct: 293 GSGYEGHAGELKAVVKDTMKDTVSREALRH-PEFEGKVKLGRRRDHFI 339
>gi|449017050|dbj|BAM80452.1| RNA polymerase I, III common subunit [Cyanidioschyzon merolae
strain 10D]
Length = 383
Score = 167 bits (423), Expect = 7e-39, Method: Compositional matrix adjust.
Identities = 100/294 (34%), Positives = 157/294 (53%), Gaps = 35/294 (11%)
Query: 72 FCNNFRVEVIRLTK-----DDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTS 126
F N E +R+ K D++ F++ G+DA NA RR+L+AE+PTMAIE V + N++
Sbjct: 14 FDPNKEQERVRIRKTLHRIDEVSFEVSGVDAPFLNALRRVLLAEVPTMAIEYVTVNENST 73
Query: 127 VIQDEVLAHRLGLIPIIVDPRLFEYMSENDTSNEKNTIVFKLHV---------------- 170
V+ DE LAHRLGL+P++ DPR FE+ E+D + +NTI F+L V
Sbjct: 74 VMNDEFLAHRLGLVPVLADPRRFEFRRESDEPSAQNTICFRLRVPPVNRKAHPEWNLSDG 133
Query: 171 ---LCERGGPRLTVKTNELKW---LPNGSELPLETKPDSNPSSKPRTYTSFSSSQDLLPE 224
+ P + V ++++ W E L + ++P + + D L
Sbjct: 134 AVFAGDDAVPSIPVYSDDIIWEQLQTRVGESCLSSTEGASPHRSSSDAQQQAEATDGLAS 193
Query: 225 FSNN-----PIRPMLDITIARLGPGQEIELEAHAVKGIGKTHAKWSPVATAWYRMLPEIV 279
+++ P++ I + ++ GQ +++ AVKG+G HAKWSPVATA+Y+M+P +
Sbjct: 194 AADSTAAVEPVQVQRGILLTKMLRGQRLDIRMEAVKGLGHDHAKWSPVATAYYKMVPRVH 253
Query: 280 LLEDVEDEDAEKLVKTCPVNVFDIEDIGSGKKRATVAQPRACTLCRECLRCGEE 333
L +++ E AE + C V+VFDIE+ K V CTLC EC+R E+
Sbjct: 254 LKGELKGELAETIRGACAVHVFDIEESAGTLK---VEDESRCTLCGECVRILED 304
>gi|399950006|gb|AFP65662.1| DNA-directed RNA polymerase 40k chain [Chroomonas mesostigmatica
CCMP1168]
Length = 350
Score = 167 bits (423), Expect = 7e-39, Method: Compositional matrix adjust.
Identities = 96/267 (35%), Positives = 145/267 (54%), Gaps = 29/267 (10%)
Query: 78 VEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRL 137
+ +I +KDD+ G++ NA RRIL++E+ T+ IEKV NTS++ DE+++HRL
Sbjct: 65 ISIIHWSKDDIILKAKGMELCFGNALRRILLSEIATVTIEKVFFYKNTSILNDEIVSHRL 124
Query: 138 GLIPIIVDPRLFEYMSENDTSNEKNTIVFKLHVLCERGGPRLTVKTNELKWLPNGSELPL 197
GLIPI V+ L +++ + +K TI+ KL + N PN S +
Sbjct: 125 GLIPIFVNVDLINFLTI-AKNKKKLTIILKL-------------EANH----PNDSFGNI 166
Query: 198 ETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPML-DITIARLGPGQEIELEAHAVKG 256
+S S+ N+PI+P DI +A+L PGQ+I E H V G
Sbjct: 167 AVFSNSLLQKNTGILNSW---------MKNSPIKPAFKDILVAKLNPGQKIIAECHCVLG 217
Query: 257 IGKTHAKWSPVATAWYRMLPEIVLLEDVEDEDAEKLVKTCPVNVFDIEDIGSG-KKRATV 315
G HAK+SPV T++Y++ P I ++ ++ D+ A + + CPV VFDIED+ S K+ V
Sbjct: 218 TGNIHAKFSPVGTSFYKIFPRIKIISEILDKHAHVIRQKCPVKVFDIEDVNSNFGKKLKV 277
Query: 316 AQPRACTLCRECLRCGEEWEKRVSIRR 342
+QP CTLCRECL + ++ I R
Sbjct: 278 SQPHFCTLCRECLHFPDNVNSKIRIGR 304
>gi|46105474|ref|XP_380541.1| hypothetical protein FG00365.1 [Gibberella zeae PH-1]
Length = 381
Score = 167 bits (422), Expect = 8e-39, Method: Compositional matrix adjust.
Identities = 122/339 (35%), Positives = 169/339 (49%), Gaps = 40/339 (11%)
Query: 35 QRTRVQCNLDAPIHTENVMYSGAYASMGVDNSLQLDHFCNNFRVEVIRLTKDDMEFDLIG 94
+R V N + + + Y G + G DN LD F + F V + + F L+G
Sbjct: 20 RRQTVGINKETVTNISSTDYPGHHP--GEDNEYTLDRFRDAFSVNFHQNDQFLSSFSLVG 77
Query: 95 IDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRLGLIPIIVD----PRLFE 150
IDA++ANAFRRIL++E+PT+A+E V I NNTSVIQDEVLAHRLGLIP +
Sbjct: 78 IDASLANAFRRILLSEIPTLAVENVYIENNTSVIQDEVLAHRLGLIPFKGGREGLHNFLK 137
Query: 151 YMSENDTSNEK-------NTIVFKLHVLCERGGPRLTVKTNELKWLPNGSELPLETKPDS 203
+ + + ++ NT+ +L+V C + + LK N +
Sbjct: 138 WHKKPEAGDDPYAGCFDWNTVRLELNVTCTVNEDASPTENDPLKAYHNAHVYARDIV--F 195
Query: 204 NPSSKPRTYTSFSSSQDLLPEFSNNPIRPMLDITIARLGPGQEIELEAHAVKGIGKTHAK 263
P+ + Y FS + P NP DI IA+L P Q I L H KGIG HAK
Sbjct: 196 VPTGRQAEY--FSGENAIAP---TNP-----DILIAKLRPRQTINLAMHMHKGIGSDHAK 245
Query: 264 WSPVATAWYRMLPEIVLLEDVEDEDAEKLVKTCPVNVFDIEDI--------GS------G 309
+SPVATA YR+LP I + + + DAEK K P V +E + GS G
Sbjct: 246 FSPVATASYRLLPTITITQPILGADAEKFAKCFPKGVIGLEKVTAEDAAKTGSGYEGHKG 305
Query: 310 KKRATVAQPRACTLCRECLRCGEEWEKRVSIRRVKDHFI 348
+ +A V T+ RE LR EE++ +V + R +DHFI
Sbjct: 306 ETKAVVVDAMKDTVSREALRH-EEFQGKVKLGRRRDHFI 343
>gi|399218932|emb|CCF75819.1| unnamed protein product [Babesia microti strain RI]
Length = 318
Score = 166 bits (419), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 102/285 (35%), Positives = 151/285 (52%), Gaps = 45/285 (15%)
Query: 74 NNFRVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVL 133
+N ++ ++ D ++ G+D + NA RRILIAE+P++AIE V++ NT +I D+VL
Sbjct: 34 DNLAIKFLKREFDHSIIEIKGLDVSFVNAIRRILIAEVPSLAIETVMVWQNTGLIHDDVL 93
Query: 134 AHRLGLIPIIVDPRLFEYMSENDTSNEKNTIVFKLHVLCERGG--PRLTVKTNELKWLPN 191
AHRL L+P VDP Y + NE N++ F+L V + +V T++LKW+P
Sbjct: 94 AHRLALVPFNVDPEEINYRGHENL-NESNSVCFELKVAHDANCIEKYQSVYTSQLKWIPL 152
Query: 192 GSELPLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPML-DITIARLGPGQEIELE 250
G E N RP+ DI + +L PGQ+IEL+
Sbjct: 153 GDEQH--------------------------KRLGKNQPRPLFEDILLTKLAPGQQIELK 186
Query: 251 AHAVKGIGKTHAKWSPVATAWYRMLPEIVLLEDVED-------EDAEKLVKTCPVNVFDI 303
A+ KGIG+THAKWS V++A YR P I D +++++LV TCP+NVF +
Sbjct: 187 AYLEKGIGRTHAKWSIVSSATYRFYPHIGSHSTYSDISSQLTRDESKELVATCPMNVFAL 246
Query: 304 EDIGSGKKRATVAQPRACTLCRECLRCGEEWEKRVSIRRVKDHFI 348
+ G+ V P CT CR C+ E K+V+I +V +HFI
Sbjct: 247 DHKGN----VIVEDPLKCTSCRACI----ERFKQVTITKVTNHFI 283
>gi|401825113|ref|XP_003886652.1| DNA-directed RNA polymerase I [Encephalitozoon hellem ATCC 50504]
gi|395459797|gb|AFM97671.1| DNA-directed RNA polymerase I [Encephalitozoon hellem ATCC 50504]
Length = 305
Score = 165 bits (418), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 105/280 (37%), Positives = 149/280 (53%), Gaps = 35/280 (12%)
Query: 69 LDHFCNNFRVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVI 128
+ N+ + + TK+ +EFDLI +D + ANA RRIL ++PTMA+ VL+ N SV
Sbjct: 23 FEQVLNDIEINITEYTKERLEFDLINVDCSFANALRRILCNDIPTMAVRDVLLKENESVF 82
Query: 129 QDEVLAHRLGLIPIIVDPRLFEYMSENDTSNEKNTIVFKLHVLCERGGPRLTVKTNELKW 188
DE +AHRLGLIP+ DP +FE+ + NE+N++ F L V E L V ++++KW
Sbjct: 83 PDEFIAHRLGLIPLEADPEMFEFAEKE--LNERNSLRFVLDVKNE-SKDVLNVYSDDIKW 139
Query: 189 LPNGSELPLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPMLDITIARLGPGQEIE 248
+P GS+ T D SSK + + +L GQ I
Sbjct: 140 IPFGSQRG--TLKDVKFSSK---------------------------VLMFKLARGQRIS 170
Query: 249 LEAHAVKGIGKTHAKWSPVATAWYRMLPEIVLLEDVEDEDAEKLVKTCPVNVFDIEDIGS 308
E K IGK HAKWSPV A YR++P ++ + DV DEDA KL K V D+
Sbjct: 171 AELVCTKNIGKVHAKWSPVCPATYRLMP-LIEIGDVFDEDAYKLQKCFSEGVIDVRP-SD 228
Query: 309 GKKRATVAQPRACTLCRECLRCGEEWEKRVSIRRVKDHFI 348
G+ +A V PR T+ RE LR +E++ +V I R D+F+
Sbjct: 229 GRMKAYVNNPRLDTMSREALR-HDEFKDKVFIGRRSDYFL 267
>gi|402080745|gb|EJT75890.1| DNA-directed RNA polymerase I and III subunit RPAC1 [Gaeumannomyces
graminis var. tritici R3-111a-1]
Length = 373
Score = 165 bits (418), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 120/347 (34%), Positives = 172/347 (49%), Gaps = 58/347 (16%)
Query: 35 QRTRVQCNLDAPIHTENVMYSGAYASMGVDNSLQLDHFCNNFRVEVIRLTKDDMEFDLIG 94
+R V N + + + + G + G ++ LD F F ++ + F L+G
Sbjct: 14 RRKIVGINKETVTNVSSTDFPGHF--FGEQHAWDLDLFSQTFSIQFHQNDPFHASFSLVG 71
Query: 95 IDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRLGLIPIIVDPR-LFEYM- 152
+DA+IANAFRRI+I+E+P++AIE+V I+NNTSVIQDEVLA RLGL+P+ L +M
Sbjct: 72 VDASIANAFRRIMISEIPSLAIERVFISNNTSVIQDEVLAQRLGLVPLRGSREGLRRFMR 131
Query: 153 -------SENDTSNEKNTIVFKLHVLCERGGPRLTVKTNELKWLPNGSELPLETKPDSNP 205
D S + NT+ +L V C R NE +++P
Sbjct: 132 VYRKSEAGAFDNSFDFNTVNLRLSVQCSR---------NEAA-----------AAGETDP 171
Query: 206 SSKPRTYTSFSSSQDLLPE------FSNN----PIRPMLDITIARLGPGQEIELEAHAVK 255
+ ++ + LPE FS + P+ P DI +A+L PGQ IELE HA
Sbjct: 172 AKLYHHANVYARDIEFLPEGQQADWFSGDGVIGPVNP--DILLAKLRPGQAIELEMHAHV 229
Query: 256 GIGKTHAKWSPVATAWYRMLPEIVLLEDVEDEDAEKLVKTCPVNVFDIEDI--------G 307
G G HAK+SPV TA YR++P I + + DAEK P V + + G
Sbjct: 230 GYGWDHAKFSPVCTASYRLMPTIDITRPILGADAEKFRDCFPDGVIGLRKVTAEDAARAG 289
Query: 308 SGKK------RATVAQPRACTLCRECLRCGEEWEKRVSIRRVKDHFI 348
SG + +A V P T+ RECLR E+E +V + R +DHFI
Sbjct: 290 SGYEGRKGELKAVVEDPMRDTVSRECLRHA-EFEGKVKLGRRRDHFI 335
>gi|358378075|gb|EHK15758.1| hypothetical protein TRIVIDRAFT_38208 [Trichoderma virens Gv29-8]
Length = 371
Score = 165 bits (418), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 125/321 (38%), Positives = 165/321 (51%), Gaps = 56/321 (17%)
Query: 62 GVDNSLQLDHFCNNFRVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLI 121
G D++ ++ F + F V+ R +D F LIGIDA++ANAFRRILIAE+PT+AIE V I
Sbjct: 35 GEDHAFTIERFRSAFSVQFHRNELNDASFSLIGIDASLANAFRRILIAEIPTLAIEDVYI 94
Query: 122 ANNTSVIQDEVLAHRLGLIPI-------------IVDPRLFEYMSENDTSNEKNTIVFKL 168
NNTSVIQDEVLAHRLGLIP P E N S + NT+ +L
Sbjct: 95 ENNTSVIQDEVLAHRLGLIPFNGGREGIHNFLKWYKKPEAGEDAYAN--SFDWNTVRLEL 152
Query: 169 HVLCERGGPRLTVKTNELKWLPNGSELPLETKPDSNPSSK-------PRTYTSFSSSQDL 221
++ C TV + PN ++ PL+ ++ +K R FS +
Sbjct: 153 NITC-------TVNPDA---SPNEND-PLKAYNHAHVYAKDIVFVPTGRQVEYFSGENAI 201
Query: 222 LPEFSNNPIRPMLDITIARLGPGQEIELEAHAVKGIGKTHAKWSPVATAWYRMLPEIVLL 281
P NP DI IA+L P Q I L H KGIG H+K+SPVATA YR+LP I +
Sbjct: 202 AP---TNP-----DILIAKLRPKQTINLAMHMHKGIGADHSKFSPVATASYRLLPLIHIT 253
Query: 282 EDVEDEDAEKLVKTCPVNVFDIEDI--------GSGKK------RATVAQPRACTLCREC 327
+ + DAEK + P V +E I GSG + +A V T+ RE
Sbjct: 254 KPIIGADAEKFQRCFPQGVIGLEKITREEASKSGSGYEGHAGELKAVVKDSMKDTVSREA 313
Query: 328 LRCGEEWEKRVSIRRVKDHFI 348
LR E+E +V + R +DHFI
Sbjct: 314 LRH-PEFEGKVKLGRRRDHFI 333
>gi|154319504|ref|XP_001559069.1| hypothetical protein BC1G_02233 [Botryotinia fuckeliana B05.10]
gi|347842400|emb|CCD56972.1| similar to DNA-directed RNA polymerases I and III subunit RPAC1
[Botryotinia fuckeliana]
Length = 389
Score = 165 bits (418), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 116/294 (39%), Positives = 157/294 (53%), Gaps = 55/294 (18%)
Query: 90 FDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRLGLIPIIVDPR-L 148
F LIGIDA++ANAFRRILIAE+PT+AIE + NNTSVIQDEVL RLGL+P L
Sbjct: 78 FSLIGIDASVANAFRRILIAEIPTLAIEYCFVKNNTSVIQDEVLCARLGLVPFKGGKEGL 137
Query: 149 FEYMS-------------ENDTSNEKNTIVFKLHVLCERGGPRLTVKTNELKWLPNGSEL 195
++M + S + NTI L + C R N
Sbjct: 138 LDFMKWFQKPEEETPEEERHLGSFDHNTIQLTLKIECTR----------------NKEAA 181
Query: 196 PLETKP-----DSNPSSKPRTYTSFSSSQDLLPEFSN-NPIR-PMLDITIARLGPGQEIE 248
P ET P +++ +K + F L FS N I+ P DI IA++ PGQ I+
Sbjct: 182 PGETDPRKVYHNAHVYAKDIEFKPFGRQ---LEYFSGENTIKSPNPDILIAKMRPGQVID 238
Query: 249 LEAHAVKGIGKTHAKWSPVATAWYRMLPEIVLLEDVEDEDAEKLVKTCPVNVFDIEDI-- 306
++ HA+KGIG+ HAK+SPVATA YR+LP I + + + +DA+K + P V IE +
Sbjct: 239 IDMHAIKGIGRDHAKFSPVATASYRLLPVIDITQPILGKDAKKFKRCFPDGVIGIEKVTA 298
Query: 307 ------GS------GKKRATVAQPRACTLCRECLRCGEEWEKRVSIRRVKDHFI 348
GS G+ +A V T+ RECLR EE++ +V + RV+DHFI
Sbjct: 299 KEAKIKGSGYEGHEGEDKAVVVDAMRDTVSRECLR-HEEFQGKVKLGRVRDHFI 351
>gi|160331409|ref|XP_001712412.1| rpa5 [Hemiselmis andersenii]
gi|159765860|gb|ABW98087.1| rpa5 [Hemiselmis andersenii]
Length = 335
Score = 165 bits (417), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 89/287 (31%), Positives = 149/287 (51%), Gaps = 33/287 (11%)
Query: 48 HTENVMYSGAYAS----MGVDNSLQLDHFCNNFRVEVIRLTKDDMEFDLIGIDAAIANAF 103
H E + ++ ++ + N + F ++ I+ ++++ F + G D + +NA
Sbjct: 14 HLEQIQFNKSFIGSKNFIENQNPFSISDFRYGISIKAIKKNQEELIFQIKGFDFSFSNAL 73
Query: 104 RRILIAELPTMAIEKVLIANNTSVIQDEVLAHRLGLIPIIVDPRLFEYMSENDTSNEKNT 163
RRIL++E+ IEKV +N+S++ DE++AHRLG+IP+ V P +Y + T N
Sbjct: 74 RRILLSEISIFGIEKVFFYDNSSILNDEIIAHRLGMIPLFVSPHFIDYSVKKKTQNFLKI 133
Query: 164 IVFKLHVLCERGGPRLTVKTNELKWLPNGSELPLETKPDSNPSSKPRTYTSFSSSQDLLP 223
I L ++ N PN + S K SF
Sbjct: 134 I--------------LNLRANH----PNNFFKNISIYSKSLKWKKYGVLKSF-------- 167
Query: 224 EFSNNPIRPML-DITIARLGPGQEIELEAHAVKGIGKTHAKWSPVATAWYRMLPEIVLLE 282
F N P++P+ DI IA+L PGQ+IE E ++ GIG HAK+SPV + +Y++ P+I ++
Sbjct: 168 -FKNVPVKPVFKDILIAKLNPGQKIECECESLIGIGNNHAKFSPVGSTFYKIFPKIKIIS 226
Query: 283 DVEDEDAEKLVKTCPVNVFDIEDIG-SGKKRATVAQPRACTLCRECL 328
++ ++A LV+ CP+ VFD+E+ KR V+ P CT+C+EC+
Sbjct: 227 EIFGKEAVFLVQKCPMKVFDLEEFSLFSLKRLFVSSPNYCTMCKECI 273
>gi|308158822|gb|EFO61385.1| DNA-directed RNA polymerase subunit D [Giardia lamblia P15]
Length = 350
Score = 164 bits (416), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 108/297 (36%), Positives = 155/297 (52%), Gaps = 62/297 (20%)
Query: 86 DDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRLGLIPIIVD 145
D F++I + IAN RRI++ E+PTMAI+ V++ N+S+I DE+ +HRLGL+P+ +D
Sbjct: 41 DTFSFEVINLSPIIANTIRRIILDEVPTMAIDTVVVHENSSIIADEIFSHRLGLVPMNID 100
Query: 146 PRLFEYMSENDTSNEKNTIVFKLHVLC----------ERGGPRLTVKTNELKWLPNGSE- 194
PRLFEY + D +E+NT+VFKL V E G V + ++ W+P G +
Sbjct: 101 PRLFEYHEDGDKIHERNTVVFKLDVTAPATYSGNFNGEEPG-WFYVYSRDICWIPVGGQK 159
Query: 195 -LPLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPMLDITIARLGPGQEIELEAHA 253
L+ + S+ SS P P+ P +I +A+L PGQ I E +
Sbjct: 160 DWLLKQEVRSDMSSLP------------------APLDP--NILLAKLAPGQRIFCELYC 199
Query: 254 VKGIGKTHAKWSPVATAWYRMLPEIVLLEDV----------EDEDAEKLVKTCPVNVF-- 301
KGIG+ HAK+ PV TAWY+M +I L +D DE KL K CP++VF
Sbjct: 200 HKGIGRMHAKFQPVGTAWYKMKTQIALDKDKLLHHPEVNGDADELVAKLHKVCPISVFAD 259
Query: 302 -----DIEDIGSGKKRATVAQP---RACTLCRECLRCGEEWEKRVSIR--RVKDHFI 348
DIED +V P ACTLCREC+ + + + IR +K H +
Sbjct: 260 IDRQLDIEDF-------SVRYPDRVEACTLCRECIAAFTDEQNQCGIRLELIKTHLV 309
>gi|342874377|gb|EGU76391.1| hypothetical protein FOXB_13069 [Fusarium oxysporum Fo5176]
Length = 381
Score = 164 bits (415), Expect = 6e-38, Method: Compositional matrix adjust.
Identities = 123/338 (36%), Positives = 168/338 (49%), Gaps = 40/338 (11%)
Query: 36 RTRVQCNLDAPIHTENVMYSGAYASMGVDNSLQLDHFCNNFRVEVIRLTKDDMEFDLIGI 95
R V N + + + Y G + G D + LD F + F V+ + + F L+GI
Sbjct: 21 RQTVGINKETVTNITSTDYPGHHP--GEDLAFTLDRFRDAFSVKFHQNDQFLASFSLVGI 78
Query: 96 DAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRLGLIPIIVD----PRLFEY 151
DA++ANAFRRIL++E+PT+AIE V I NNTSVIQDEVLAHRLGLIP ++
Sbjct: 79 DASLANAFRRILLSEIPTLAIENVYIENNTSVIQDEVLAHRLGLIPFKGGREGLHNFLKW 138
Query: 152 MSENDTSNEK-------NTIVFKLHVLCERGGPRLTVKTNELKWLPNGSELPLETKPDSN 204
+ + + NT+ +L+V C + + LK N +
Sbjct: 139 HKKPEAGEDPYAGCFDWNTVRLELNVTCTVNEDASPAENDPLKAYHNAHVYARDIV--FV 196
Query: 205 PSSKPRTYTSFSSSQDLLPEFSNNPIRPMLDITIARLGPGQEIELEAHAVKGIGKTHAKW 264
P+ K Y FS + P NP DI IA+L P Q I L H KGIG HAK+
Sbjct: 197 PTGKQVEY--FSGEDAIAP---TNP-----DILIAKLRPRQTINLAMHMHKGIGSDHAKF 246
Query: 265 SPVATAWYRMLPEIVLLEDVEDEDAEKLVKTCPVNVFDIEDI--------GS------GK 310
SPVATA YR+LP I + + + DAEK K P V +E + GS G+
Sbjct: 247 SPVATASYRLLPTITITKPILGADAEKFAKCFPKGVIGLEKVTAEEAAQAGSGYEGQEGE 306
Query: 311 KRATVAQPRACTLCRECLRCGEEWEKRVSIRRVKDHFI 348
+A V T+ RE LR +E+E +V + R +DHFI
Sbjct: 307 TKAVVVDAMKDTVSREALRH-KEFEGKVKLGRRRDHFI 343
>gi|154335916|ref|XP_001564194.1| putative DNA-directed RNA polymerase, alpha subunit [Leishmania
braziliensis MHOM/BR/75/M2904]
gi|134061228|emb|CAM38250.1| putative DNA-directed RNA polymerase, alpha subunit [Leishmania
braziliensis MHOM/BR/75/M2904]
Length = 446
Score = 163 bits (413), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 97/280 (34%), Positives = 146/280 (52%), Gaps = 25/280 (8%)
Query: 88 MEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRLGLIPIIVDPR 147
M F+L + I+N FRR+L+ E+PT+A ++VLI N S + DE+L+HRLGLIP+
Sbjct: 123 MSFELQHVSPPISNLFRRVLMTEVPTLAFDRVLIEENDSPVLDELLSHRLGLIPVAGPVM 182
Query: 148 LFEYMSENDTSNEKN-----TIVFKLHVLCERGGPRLTVKTNELKWLP-------NGSEL 195
+Y++E++ ++ N ++F+L + + V +++L+W+P G+++
Sbjct: 183 KMQYITESNQASFTNLDPSRILLFELDAMGAKDAAVTPVYSHQLQWVPLPGQEKKGGAKV 242
Query: 196 PLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPMLDITIARLGPGQEIELEAHAVK 255
F++ D F +P DI + +LGPGQ I+L+A AVK
Sbjct: 243 GAGADAREAERGGDAGAAEFNTDDDDDAVFLVHP-----DILLTKLGPGQRIKLKAIAVK 297
Query: 256 GIGKTHAKWSPVATAWYRMLPEIVLLEDVEDEDAEKLVKTCPVNVFDIEDIGSGKKRATV 315
G G HAKW PV+ +Y M + L E + AE LVK+CP VF ED G ATV
Sbjct: 298 GFGAVHAKWCPVSACYYEMKTSVELRERLTGSAAEALVKSCPAGVFGYED-GQKGAAATV 356
Query: 316 AQPRACTLCRECLRCGEEWEK-------RVSIRRVKDHFI 348
P CTLCRECLR + RV +++ K H I
Sbjct: 357 LAPEKCTLCRECLRSDDNAGAAAASEGDRVRVQKDKTHVI 396
>gi|85690991|ref|XP_965895.1| DNA-directed RNA polymerase I [Encephalitozoon cuniculi GB-M1]
gi|19068462|emb|CAD24930.1| DNA-DIRECTED RNA POLYMERASE I [Encephalitozoon cuniculi GB-M1]
gi|449329785|gb|AGE96054.1| DNA-directed RNA polymerase I [Encephalitozoon cuniculi]
Length = 305
Score = 162 bits (411), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 99/271 (36%), Positives = 149/271 (54%), Gaps = 35/271 (12%)
Query: 78 VEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRL 137
+ + + + +EFDLI +D +IANA RRIL +E+PTMA+ + + N SV DE +AHRL
Sbjct: 32 IRITEYSSEKLEFDLINVDCSIANALRRILSSEVPTMAVRDIFLKENESVFPDEFIAHRL 91
Query: 138 GLIPIIVDPRLFEYMSENDTSNEKNTIVFKLHVLCERGGPRLTVKTNELKWLPNGSELPL 197
GL+P+ VDP +FE+ E +E+N++ F L V E G L V +++++W P GS+
Sbjct: 92 GLVPLEVDPEMFEFAGEE--LDERNSLRFTLDVRNESEGV-LNVYSDDIRWNPVGSQ--R 146
Query: 198 ETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPMLDITIARLGPGQEIELEAHAVKGI 257
E D SS+ + + RL GQ+I E K +
Sbjct: 147 EIFRDVKFSSR---------------------------VLMFRLARGQKISAELVCTKNV 179
Query: 258 GKTHAKWSPVATAWYRMLPEIVLLEDVEDEDAEKLVKTCPVNVFDIEDIGSGKKRATVAQ 317
GK HAKWSPV A YR++P ++ + D+ DEDA KL K V D+ G+ +A V+
Sbjct: 180 GKVHAKWSPVCPATYRLMP-LIEIGDIFDEDAYKLQKCFSEGVIDVRP-SDGRMKAYVSN 237
Query: 318 PRACTLCRECLRCGEEWEKRVSIRRVKDHFI 348
PR ++ RE LR EE++ ++ I R D+F+
Sbjct: 238 PRLDSMSREALR-HEEFKDKIFIGRRSDYFL 267
>gi|146084517|ref|XP_001465028.1| putative DNA-directed RNA polymerase, alpha subunit [Leishmania
infantum JPCM5]
gi|134069124|emb|CAM67271.1| putative DNA-directed RNA polymerase, alpha subunit [Leishmania
infantum JPCM5]
Length = 442
Score = 162 bits (410), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 98/283 (34%), Positives = 149/283 (52%), Gaps = 32/283 (11%)
Query: 88 MEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRLGLIPIIVDPR 147
M F++ + I+N FRR+L E+PT+A ++VLI N S + DE+L+HRLGL+P+
Sbjct: 120 MSFEMQNVSPPISNLFRRVLTTEVPTLAFDRVLIEENDSPVLDELLSHRLGLVPVAGPVM 179
Query: 148 LFEYMSENDTSNEKN-----TIVFKLHVLCERGGPRLTVKTNELKWLPNGSELPLETKPD 202
Y++E++ ++ N ++F+L + V + +L+W+P LP + K
Sbjct: 180 KMHYITESNQASFSNLDPSRVLLFELDATGAKDAAVTPVYSRQLQWVP----LPGQDKKT 235
Query: 203 SNPSSKPRT----------YTSFSSSQDLLPEFSNNPIRPMLDITIARLGPGQEIELEAH 252
+ +T T S+ D F +P DI +++LGPGQ I+L+A
Sbjct: 236 GAVAGACQTGREEYAGAAGATEHSADDDDDAVFLVHP-----DILLSKLGPGQRIKLKAI 290
Query: 253 AVKGIGKTHAKWSPVATAWYRMLPEIVLLEDVEDEDAEKLVKTCPVNVFDIEDIGSGKKR 312
AVKG+G HAKWSPV+ +Y M + L E + AE LVK+CP VF E G
Sbjct: 291 AVKGLGAVHAKWSPVSACYYEMKTSVELCERLTGSAAEALVKSCPAGVFGYEG-GQKGAA 349
Query: 313 ATVAQPRACTLCRECLRCGEEWEK-------RVSIRRVKDHFI 348
ATV P CTLCRECLR ++ + RV +++ K H +
Sbjct: 350 ATVVAPEKCTLCRECLRSDDKGAEAAASEGDRVRVQKEKTHVL 392
>gi|303388073|ref|XP_003072271.1| RNA polymerase I and III subunit AC40 [Encephalitozoon intestinalis
ATCC 50506]
gi|303301410|gb|ADM10911.1| RNA polymerase I and III subunit AC40 [Encephalitozoon intestinalis
ATCC 50506]
Length = 305
Score = 162 bits (410), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 100/271 (36%), Positives = 150/271 (55%), Gaps = 35/271 (12%)
Query: 78 VEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRL 137
+ + +K+ +EFDLI +D + ANA RRIL ++PTMAI+ V + N SV DE +AHRL
Sbjct: 32 LRITEYSKEKLEFDLINVDCSFANALRRILCNDVPTMAIKDVFLKENESVFPDEFIAHRL 91
Query: 138 GLIPIIVDPRLFEYMSENDTSNEKNTIVFKLHVLCERGGPRLTVKTNELKWLPNGSELPL 197
GLIP+ VDP +FE++ NE+N++ F L V E L V ++++KW+P G++
Sbjct: 92 GLIPLEVDPEMFEFVE--GEMNERNSLKFSLDVKNENKDV-LNVYSDDIKWIPLGNQR-- 146
Query: 198 ETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPMLDITIARLGPGQEIELEAHAVKGI 257
E ++ SS+ + + +L GQ+I E K
Sbjct: 147 EMIKNAKFSSR---------------------------VLMFKLAHGQKISAEVVCTKNT 179
Query: 258 GKTHAKWSPVATAWYRMLPEIVLLEDVEDEDAEKLVKTCPVNVFDIEDIGSGKKRATVAQ 317
GKTHAKWSPV A YR+LP ++ + D DEDA ++ K V +++ G+ +A V+
Sbjct: 180 GKTHAKWSPVCPATYRLLP-LIEIGDFFDEDAFRIQKCFSEGVIEVKQ-SDGRMKAYVSN 237
Query: 318 PRACTLCRECLRCGEEWEKRVSIRRVKDHFI 348
PR T+ RE LR EE++ +V I R DHF+
Sbjct: 238 PRLDTMSREALR-HEEFKDKVFIGRKSDHFL 267
>gi|312382270|gb|EFR27786.1| hypothetical protein AND_05113 [Anopheles darlingi]
Length = 259
Score = 162 bits (410), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 93/237 (39%), Positives = 133/237 (56%), Gaps = 40/237 (16%)
Query: 69 LDHFCNNFRVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVI 128
+ F ++ V+R ++++EFD+IG++ AIAN FRR++++E+P+MAIEKV I NNTS+I
Sbjct: 34 FERFKQQLQIVVVRYEENELEFDMIGVNPAIANVFRRLMLSEVPSMAIEKVHIYNNTSII 93
Query: 129 QDEVLAHRLGLIPIIVDPRLFEYMS-ENDTSNEKNTIVFKLHVLCERGGPRLTVKTNELK 187
QDEVLAHRLGLIP+ DPR+FEY + E D ++++ F+L V C R T TN
Sbjct: 94 QDEVLAHRLGLIPLRADPRMFEYKANETDPPTAQDSLEFELKVKCTRKNKDSTEVTNN-- 151
Query: 188 WLPNGSELPLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPMLDITIARLGPGQEI 247
+ R ++ +S I ++ PG E
Sbjct: 152 ------------------DNMYRNHSIYSGQ-------------------INKMRPGHEF 174
Query: 248 ELEAHAVKGIGKTHAKWSPVATAWYRMLPEIVLLEDVEDEDAEKLVKTCPVNVFDIE 304
+++ AVKGIGK HAK+SPVAT YRMLP+I L + V DA L K V +I+
Sbjct: 175 DIKLFAVKGIGKDHAKFSPVATVSYRMLPDIQLTQPVIGNDARLLQKCFSPGVIEID 231
>gi|398014106|ref|XP_003860244.1| DNA-directed RNA polymerase, alpha subunit, putative [Leishmania
donovani]
gi|322498464|emb|CBZ33537.1| DNA-directed RNA polymerase, alpha subunit, putative [Leishmania
donovani]
Length = 442
Score = 161 bits (408), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 100/283 (35%), Positives = 149/283 (52%), Gaps = 32/283 (11%)
Query: 88 MEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRLGLIPIIVDPR 147
M F++ + I+N FRR+L E+PT+A ++VLI N S + DE+L+HRLGL+P+
Sbjct: 120 MSFEMQNVSPPISNLFRRVLTTEVPTLAFDRVLIEENDSPVLDELLSHRLGLVPVAGPVM 179
Query: 148 LFEYMSENDTSNEKN-----TIVFKLHVLCERGGPRLTVKTNELKWLPNGSELPLETKPD 202
Y++E++ ++ N ++F+L + V + +L+W+P LP + K
Sbjct: 180 KMHYITESNQASFSNLDPSRVLLFELDATGAKDAAVTPVYSRQLQWVP----LPGQDKKT 235
Query: 203 SNPSSKPRT----------YTSFSSSQDLLPEFSNNPIRPMLDITIARLGPGQEIELEAH 252
+ +T T S+ D F +P DI +++LGPGQ I+L+A
Sbjct: 236 GAVAGACQTGREEYAGAAGATEHSADDDDDAVFLVHP-----DILLSKLGPGQRIKLKAI 290
Query: 253 AVKGIGKTHAKWSPVATAWYRMLPEIVLLEDVEDEDAEKLVKTCPVNVFDIEDIGSGKKR 312
AVKG+G HAKWSPV+ +Y M + L E + AE LVK+CP VF E G
Sbjct: 291 AVKGLGAVHAKWSPVSACYYEMKTSVELCERLTGSAAEALVKSCPAGVFGYEG-GQKGAA 349
Query: 313 ATVAQPRACTLCRECLRC-GEEWEK------RVSIRRVKDHFI 348
ATV P CTLCRECLR G+ E RV +++ K H +
Sbjct: 350 ATVVAPEKCTLCRECLRSDGKGAEAAASEGDRVRVQKEKTHVL 392
>gi|302923338|ref|XP_003053654.1| predicted protein [Nectria haematococca mpVI 77-13-4]
gi|256734595|gb|EEU47941.1| predicted protein [Nectria haematococca mpVI 77-13-4]
Length = 381
Score = 160 bits (404), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 121/339 (35%), Positives = 169/339 (49%), Gaps = 40/339 (11%)
Query: 35 QRTRVQCNLDAPIHTENVMYSGAYASMGVDNSLQLDHFCNNFRVEVIRLTKDDMEFDLIG 94
+R V N + + + Y G + G D + ++ F F V + + F L+G
Sbjct: 20 RRQTVGINKETVTNISSTDYPGHHP--GEDAAFTIERFREGFSVGFHQNDQFLSSFSLVG 77
Query: 95 IDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRLGLIPIIVDPR-LFEYM- 152
IDA++ANAFRRIL+AE+PT+A+E V I NNTSVIQDEVLAHRLGL+P L +++
Sbjct: 78 IDASLANAFRRILLAEIPTLAVENVYIENNTSVIQDEVLAHRLGLVPFKGGREGLRDFLK 137
Query: 153 -------SENDTSN--EKNTIVFKLHVLCERGGPRLTVKTNELKWLPNGSELPLETKPDS 203
E+ S + NT+ +L+V C + + LK N +
Sbjct: 138 WYKKPEPGEDPFSGCFDYNTVRLELNVTCTVNPDASPTENDPLKAYNNAHVYARDIV--F 195
Query: 204 NPSSKPRTYTSFSSSQDLLPEFSNNPIRPMLDITIARLGPGQEIELEAHAVKGIGKTHAK 263
P+ + Y F + P NP DI IA+L P Q I L H KGIG HAK
Sbjct: 196 VPTGRQAEY--FDGEDAIAP---TNP-----DILIAKLRPRQTINLAMHMHKGIGADHAK 245
Query: 264 WSPVATAWYRMLPEIVLLEDVEDEDAEKLVKTCPVNVFDIEDI--------GS------G 309
+SPVATA YR+LP I + + + DA+K K P V +E + GS G
Sbjct: 246 FSPVATASYRLLPTITITKPILGADADKFAKCFPQGVIGLERVTAEEAAQAGSGYEGHEG 305
Query: 310 KKRATVAQPRACTLCRECLRCGEEWEKRVSIRRVKDHFI 348
+ +A V T+ RE LR EE+E +V + R +DHFI
Sbjct: 306 ETKAVVVDAMKDTVSREVLRH-EEFEGKVKLGRRRDHFI 343
>gi|123464689|ref|XP_001317116.1| RNA polymerase Rpb3/Rpb11 dimerisation domain containing protein
[Trichomonas vaginalis G3]
gi|121899842|gb|EAY04893.1| RNA polymerase Rpb3/Rpb11 dimerisation domain containing protein
[Trichomonas vaginalis G3]
Length = 341
Score = 159 bits (403), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 103/275 (37%), Positives = 153/275 (55%), Gaps = 28/275 (10%)
Query: 85 KDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRLGLIPIIV 144
+D + FDL A+ ANA RR L+A +P++AIE V + +NT V+ DEVL HRLGLIPI
Sbjct: 43 EDRLVFDLTNAPASHANALRRTLLASVPSIAIELVGMLDNTGVMPDEVLCHRLGLIPINA 102
Query: 145 DPRLFEYMS---ENDTSNEKNTIVFKLHVLCERG-GPRLT-VKTNELKWLP----NGSEL 195
DP L +Y E+ +S+ ++F LHV+ RG P L+ V + + LP +GS
Sbjct: 103 DPSLLDYPKQKIEDKSSDPNEVLLFGLHVIGGRGPTPDLSNVDASMEENLPPTYIDGS-- 160
Query: 196 PLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPM-LDITIARLGPGQEIELEAHAV 254
NP ++ + + +F N + P+ DI I ++ PGQ I L A+
Sbjct: 161 ------IENPGEILSSHLVWMPYEGQREKFGN--VAPLHADIPITKILPGQTIHLYCRAI 212
Query: 255 KGIGKTHAKWSPVATAWYRMLPEIVLLEDV--EDEDAEKLVKTCPVNVFDIEDIGSGKKR 312
KGIG HAK+ PV TA+YR++P I + +++ ++ +KL+ CP+ VFDIED +
Sbjct: 213 KGIGSDHAKFQPVCTAFYRLVPSIQVKDEINSSEKKQQKLISKCPMGVFDIED-----SK 267
Query: 313 ATVAQPRACTLCRECLRCGEEWEKRVSIRRVKDHF 347
V PR CT CREC+R VS+ + +H+
Sbjct: 268 LVVRSPRKCTTCRECIR-NPSLAHYVSLGKEANHY 301
>gi|157868180|ref|XP_001682643.1| putative DNA-directed RNA polymerase,alpha subunit [Leishmania
major strain Friedlin]
gi|68126098|emb|CAJ07151.1| putative DNA-directed RNA polymerase,alpha subunit [Leishmania
major strain Friedlin]
Length = 442
Score = 159 bits (402), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 93/279 (33%), Positives = 144/279 (51%), Gaps = 24/279 (8%)
Query: 88 MEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRLGLIPIIVDPR 147
M F++ + IAN RR+L E+PT+A ++VLI N S + DE+L+HRLGL+P+
Sbjct: 120 MSFEMQNVSPPIANLLRRVLTTEVPTLAFDRVLIEENDSPVLDELLSHRLGLVPVAGPVM 179
Query: 148 LFEYMSENDTSNEKN-----TIVFKLHVLCERGGPRLTVKTNELKWLP------NGSELP 196
Y++E++ ++ N ++F+L + V + +L+W+P +
Sbjct: 180 KMHYITESNQASFSNLDPSRVLLFELDATGAKDAAVTPVYSGQLQWVPLPGQDKTAGAVA 239
Query: 197 LETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPMLDITIARLGPGQEIELEAHAVKG 256
+ + + T S+ +D F +P DI + +LGPGQ I+L+A AVKG
Sbjct: 240 VACQAGREECAGAAGATDHSADEDDDAVFLVHP-----DILLTKLGPGQRIKLKAIAVKG 294
Query: 257 IGKTHAKWSPVATAWYRMLPEIVLLEDVEDEDAEKLVKTCPVNVFDIEDIGSGKKRATVA 316
G HAKWSPV+ +Y M + L E + AE L+K+CP VF E G ATV
Sbjct: 295 FGAVHAKWSPVSACYYEMKTSVELCERLTGSAAEALIKSCPAGVFGYEG-GQRGAAATVV 353
Query: 317 QPRACTLCRECLRCGEEWEK-------RVSIRRVKDHFI 348
P CTLCRECLR ++ + RV +++ K H +
Sbjct: 354 APEKCTLCRECLRSEDKGAEAAANKGDRVRVQKDKTHVL 392
>gi|300708874|ref|XP_002996608.1| hypothetical protein NCER_100268 [Nosema ceranae BRL01]
gi|239605923|gb|EEQ82937.1| hypothetical protein NCER_100268 [Nosema ceranae BRL01]
Length = 293
Score = 159 bits (401), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 107/288 (37%), Positives = 153/288 (53%), Gaps = 58/288 (20%)
Query: 75 NFRVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLA 134
N ++++I+ +EFDL+G+D ++ANA RRILI E+PT AIE V I +NTSV+ DE LA
Sbjct: 29 NIKLDIIKKEHLVLEFDLVGVDCSVANALRRILINEIPTFAIENVFIFDNTSVLPDEFLA 88
Query: 135 HRLGLIPIIVDPRL----FEY-MSENDTSNEKNTIVFKLHVLCERGGPRLTVKTNELKWL 189
HRLGLIP+ V P L F + + + +TS+E +TV +N++K++
Sbjct: 89 HRLGLIPLDVCPDLEVGDFHFELKKTNTSSE-----------------VMTVTSNDIKYI 131
Query: 190 PNGSELPLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPMLDITIARLGPGQEIEL 249
K D P I DI IA+L P Q + +
Sbjct: 132 ----------KKDGQPD-----------------------IEISKDIPIAKLAPKQALII 158
Query: 250 EAHAVKGIGKTHAKWSPVATAWYRMLPEIVLLEDVEDEDAEKLVKTCPVNVFDIEDIGSG 309
E A K +G+ HAKWSPV TA YR++P I+ +ED DE+AEKL K V + G
Sbjct: 159 EMVACKNVGRVHAKWSPVCTAAYRLMP-IIKIEDFYDEEAEKLQKCFSPGVISLVKEGES 217
Query: 310 KKRATVAQPRACTLCRECLRCGEEWEKRVSIRRVKDHFICKYVMLIIN 357
K A V++PR T+ RE R +E+E +V + R DHFI L+++
Sbjct: 218 YK-AIVSEPRKDTVSREVFR-HKEFENKVFLGRKNDHFIFTVESLVLD 263
>gi|396080763|gb|AFN82384.1| RNA polymerase I and III subunit AC40 [Encephalitozoon romaleae
SJ-2008]
Length = 305
Score = 157 bits (398), Expect = 6e-36, Method: Compositional matrix adjust.
Identities = 95/275 (34%), Positives = 149/275 (54%), Gaps = 35/275 (12%)
Query: 74 NNFRVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVL 133
++ +++ + + +EFDL+ +D + ANA RRIL ++PTMA++ V + N SV DE +
Sbjct: 28 DDIEIKITEYSGERLEFDLVNVDCSFANALRRILCNDVPTMAVKDVFLKENESVFPDEFI 87
Query: 134 AHRLGLIPIIVDPRLFEYMSENDTSNEKNTIVFKLHVLCERGGPRLTVKTNELKWLPNGS 193
AHRLGLIP+ DP +FE++ + NE+N++ F L+V E + V ++++KW+P G
Sbjct: 88 AHRLGLIPLEADPEMFEFVEKE--LNERNSLRFVLNVTNE-SKDVMNVYSDDIKWIPFGG 144
Query: 194 ELPLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPMLDITIARLGPGQEIELEAHA 253
+ + F S + + +L GQ+I E
Sbjct: 145 Q------------REALRNAKFCSG-----------------VLMFKLARGQKINAELVC 175
Query: 254 VKGIGKTHAKWSPVATAWYRMLPEIVLLEDVEDEDAEKLVKTCPVNVFDIEDIGSGKKRA 313
K IG+ HAKWSPV A YR++P ++ + DV DEDA KL K V D+ + G+ +A
Sbjct: 176 TKNIGRVHAKWSPVCPATYRLMP-LIEIGDVFDEDAYKLQKCFSEGVIDVR-LSDGRMKA 233
Query: 314 TVAQPRACTLCRECLRCGEEWEKRVSIRRVKDHFI 348
V PR T+ RE LR EE++ +V I R D+F+
Sbjct: 234 YVVNPRLDTMSREALR-HEEFKDKVFIGRRSDYFL 267
>gi|57965352|ref|XP_561116.1| Anopheles gambiae str. PEST AGAP012796-PA [Anopheles gambiae str.
PEST]
gi|55247027|gb|EAL42262.1| AGAP012796-PA [Anopheles gambiae str. PEST]
Length = 234
Score = 157 bits (397), Expect = 7e-36, Method: Compositional matrix adjust.
Identities = 89/226 (39%), Positives = 130/226 (57%), Gaps = 41/226 (18%)
Query: 69 LDHFCNNFRVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVI 128
+ F ++ V+R ++++EFD+IG+ AIAN FRR++++E+P+MAIEKV I NNTS+I
Sbjct: 34 FESFKRKLQIVVVRYDENELEFDMIGV-TAIANVFRRLMLSEVPSMAIEKVHIYNNTSII 92
Query: 129 QDEVLAHRLGLIPIIVDPRLFEYMS-ENDTSNEKNTIVFKLHVLCERGGPRLTVKTN--- 184
QD LAHRLGLIP+ DPR+FEY + E D + +T+ F+L V C R T TN
Sbjct: 93 QDGGLAHRLGLIPLRADPRMFEYKANETDPPSALDTLEFELKVKCTRKNKDSTEVTNNEN 152
Query: 185 ----------ELKWLPNGSELPLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPML 234
++KW+P G++ + T+ P
Sbjct: 153 MYKNHSIYSGQIKWVPIGNQATIYTEATVGPIDD-------------------------- 186
Query: 235 DITIARLGPGQEIELEAHAVKGIGKTHAKWSPVATAWYRMLPEIVL 280
DI I+++ PG E +++ AVKG+GK HAK+SPVAT YR+LP+I L
Sbjct: 187 DILISKMRPGHEFDIKLFAVKGVGKDHAKFSPVATVSYRLLPDIKL 232
>gi|357612390|gb|EHJ67960.1| DNA-directed RNA polymerase [Danaus plexippus]
Length = 322
Score = 157 bits (396), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 103/299 (34%), Positives = 152/299 (50%), Gaps = 55/299 (18%)
Query: 64 DNSLQLDHFCNNFRVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIAN 123
D F FR+ ++R+ +MEFDLIGI A ANAFRR++++E+P+MAIEKV+I N
Sbjct: 28 DEKWNFKKFTKKFRIVIVRMDSTEMEFDLIGIQPAFANAFRRLMLSEVPSMAIEKVMIKN 87
Query: 124 NTSVIQDEVLAHRLGLIPIIVDPRLFEYMSEN-DTSNEKNTIVFKLHVLC--ERGGPR-- 178
NTS+IQDEVLAHRLGLIP+ DPRLFE+ EN + E +T+ F L + C + GP+
Sbjct: 88 NTSIIQDEVLAHRLGLIPLKADPRLFEFRPENAEEGTEFDTLEFSLKIKCTNNKYGPKDS 147
Query: 179 ---------LTVKTNELKWLPNGSELPLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNP 229
+V ++ +KW P G++ + + D P
Sbjct: 148 FRAEDLYENHSVYSSSIKWHPIGNQASIHKEADVGPVDD--------------------- 186
Query: 230 IRPMLDITIARLGPGQEIELEAHAVKGIGKTHAKWSPVATAWYRMLPEIVLLEDVEDEDA 289
DI I+++ PG E+++ H V I T TA YR+LPE+ L +V+ +A
Sbjct: 187 -----DILISKMRPGHELDM--HLVVHIFDT--------TASYRLLPEVTLTREVDGSEA 231
Query: 290 EKLVKTCPVNVFDIEDIGSGKKRATVAQPRACTLCRECLRCGEEWEKRVSIRRVKDHFI 348
L V ++ G +A V R + R R + + V + R++DHFI
Sbjct: 232 TLLQSCFSPGVIGLDSDG----KAFVRDARYDSCSRNAYRY-DCIKDAVILSRIRDHFI 285
>gi|323350237|gb|EGA84384.1| Rpc40p [Saccharomyces cerevisiae VL3]
Length = 265
Score = 156 bits (394), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 98/249 (39%), Positives = 141/249 (56%), Gaps = 27/249 (10%)
Query: 107 LIAELPTMAIEKVLIANNTSVIQDEVLAHRLGLIPIIVDPRLFEYMSENDTSNEK----N 162
+I+E+P++A E V NNTSVIQDEVLAHR+GL+P+ VDP + ++ N +EK N
Sbjct: 1 MISEVPSVAAEYVYFFNNTSVIQDEVLAHRIGLVPLKVDPDMLTWVDSNLPDDEKFTDEN 60
Query: 163 TIVFKLHVLCERG--GPRLTVKTNELKWLPNGSELPLETKPDSNPSSKPRTYTSFSSSQD 220
TIV L+V C R P+ + EL + L+ +P S+
Sbjct: 61 TIVLSLNVKCTRNPDAPKGSTDPKELYNNAHVYARDLKFEPQGRQSTT------------ 108
Query: 221 LLPEFSNNPIRPM-LDITIARLGPGQEIELEAHAVKGIGKTHAKWSPVATAWYRMLPEIV 279
F++ P+ P DI +A+L PGQEI L+AH + GIG HAK+SPV+TA YR+LP+I
Sbjct: 109 ----FADCPVVPADPDILLAKLRPGQEISLKAHCILGIGGDHAKFSPVSTASYRLLPQIN 164
Query: 280 LLEDVEDEDAEKLVKTCPVNVFDIEDIGSGKKRATVAQPRACTLCRECLRCGEEWEKRVS 339
+L+ ++ E A + K P V I++ G A V R T+ RE LR EE+ +V
Sbjct: 165 ILQPIKGESARRFQKCFPPGVIGIDE---GSDEAYVKDARKDTVSREVLRY-EEFADKVK 220
Query: 340 IRRVKDHFI 348
+ RV++HFI
Sbjct: 221 LGRVRNHFI 229
>gi|401419509|ref|XP_003874244.1| DNA-directed RNA polymerase, alpha subunit,putative [Leishmania
mexicana MHOM/GT/2001/U1103]
gi|322490479|emb|CBZ25739.1| DNA-directed RNA polymerase, alpha subunit,putative [Leishmania
mexicana MHOM/GT/2001/U1103]
Length = 434
Score = 155 bits (393), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 91/251 (36%), Positives = 136/251 (54%), Gaps = 17/251 (6%)
Query: 86 DDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRLGLIPIIVD 145
+ M F++ + I+N FRR+L E+PT+A ++VLI N S + DE+L+HRLGL+P+
Sbjct: 118 ERMSFEMQNVSPPISNLFRRVLTTEVPTLAFDRVLIEENDSPVLDELLSHRLGLVPVAGP 177
Query: 146 PRLFEYMSENDTSNEKN-----TIVFKLHVLCERGGPRLTVKTNELKWLPNGSELPLETK 200
Y++E++ ++ N ++F+L + V + +L+W+P LP + K
Sbjct: 178 VMKMHYITESNQASFNNLDPSRVLLFELDATGAKDAAVTPVYSRQLQWVP----LPGQDK 233
Query: 201 PDSNPSS--KPRTYTSFSSSQDLLPEFSNNPIRPMLDITIARLGPGQEIELEAHAVKGIG 258
+ + + + D F +P DI + +LGPGQ I+L+A AVKG+G
Sbjct: 234 KTGAVAGVCQAGSEECAGADDDDDAVFLVHP-----DILLTKLGPGQRIKLKAIAVKGLG 288
Query: 259 KTHAKWSPVATAWYRMLPEIVLLEDVEDEDAEKLVKTCPVNVFDIEDIGSGKKRATVAQP 318
HAKWSPV+ +Y M + L E + AE LVK+CP VF E G ATV P
Sbjct: 289 AVHAKWSPVSACYYEMKTSVELCERLTGSAAEALVKSCPTGVFGYEG-GQKGAAATVVAP 347
Query: 319 RACTLCRECLR 329
CTLCRECLR
Sbjct: 348 EKCTLCRECLR 358
>gi|330038595|ref|XP_003239642.1| DNA-directed RNA polymerase 40k chain [Cryptomonas paramecium]
gi|327206566|gb|AEA38744.1| DNA-directed RNA polymerase 40k chain [Cryptomonas paramecium]
Length = 429
Score = 151 bits (381), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 91/275 (33%), Positives = 148/275 (53%), Gaps = 29/275 (10%)
Query: 72 FCNNFRVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDE 131
F N+ ++ V LTKDD+ ++ G+ N RR L++E+ T+ I+KV N+S + DE
Sbjct: 43 FRNDIKINVNNLTKDDLVLNITGLYLPFLNGIRRSLLSEVNTICIDKVFFYYNSSFLDDE 102
Query: 132 VLAHRLGLIPIIVDPRLFEYMSENDTSNEKNTIVFKLHVLCERGGPRLTVKTNELKWLPN 191
+L+HRL LIP+++ Y N + I+F+++ + + +N +K
Sbjct: 103 LLSHRLALIPLLIVSHSSNYFF-NMLDDISKKIIFEINTETSVSSQKYLIYSNIIKLKLY 161
Query: 192 GSELPLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPMLDITIARLGPGQEIELEA 251
G ++S+ + + P F DI IA+L GQ+I+ E
Sbjct: 162 G------------------IHSSWLKNLHIKPVFG--------DILIAKLNSGQKIKCEC 195
Query: 252 HAVKGIGKTHAKWSPVATAWYRMLPEIVLLEDVEDEDAEKLVKTCPVNVFDIEDIGSGK- 310
H G G+ HAK+S V+TA+YR+ P I L+ ++ ++ A K+ CPVNVF +E+ S
Sbjct: 196 HCNFGNGEAHAKFSGVSTAFYRIFPRIKLVNEIINDHAVKIFTKCPVNVFQLENKYSFNC 255
Query: 311 KRATVAQPRACTLCRECLRCGEEWEKRVSIRRVKD 345
K +V+QP+ CTLCRECL EE +K++ I RV++
Sbjct: 256 KILSVSQPQYCTLCRECLNFKEE-KKKIRIGRVRE 289
>gi|170579941|ref|XP_001895048.1| RNA polymerase Rpb3/Rpb11 dimerisation domain containing protein
[Brugia malayi]
gi|158598143|gb|EDP36103.1| RNA polymerase Rpb3/Rpb11 dimerisation domain containing protein
[Brugia malayi]
Length = 339
Score = 150 bits (380), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 105/303 (34%), Positives = 153/303 (50%), Gaps = 61/303 (20%)
Query: 64 DNSLQLD--HFCNNFRVEVIRLTKDDM--EFDLIGIDAAIANAFRRILIAELPTMAIEKV 119
++++Q D + + ++ ++ +KD M EFDL+G++A IANA RRILIAELPT+AIEKV
Sbjct: 39 NSTIQWDVTAYISEIKIFIVNESKDGMTLEFDLVGVEAPIANAIRRILIAELPTLAIEKV 98
Query: 120 LIANNTSVIQDEVLAHRLGLIPIIVDPRLFEY--------------MSENDTSNEKNTIV 165
+ NTS+I DEVL+HR GL+PI DPRLF+ SE + ++
Sbjct: 99 YLYQNTSIIPDEVLSHRFGLLPIKADPRLFKMPLTRVIGIDESGVDCSEEPAGDPTRNLI 158
Query: 166 FKLHVLCERGGPRLTVKTNELKWLPNGSELPLETKPDSNPSSKPRTYTSFSSSQDLLPEF 225
F++ V C R PN K +NP +S+S +P
Sbjct: 159 FEIKVNCSRN--------------PNA------LKTATNPKEIYENAFVYSNSFKWIP-- 196
Query: 226 SNNPIRPMLDITIARLGPGQEIELEAHAVKGIGKTHAKWSPVATAWYRMLPEIVLLEDVE 285
+G Q L H +KG+G+ HAK+SPVATA YR+LP+IVL +
Sbjct: 197 ---------------IG-DQSTSLPCHCLKGLGRDHAKFSPVATASYRLLPQIVLKKKFS 240
Query: 286 DEDAEKLVKTCPVNVFDIEDIGSGKKRATVAQPRACTLCRECLRCGEEWEKRVSIRRVKD 345
DA ++ + V +I+ G A V R+ T R LR E+ + + + R+KD
Sbjct: 241 GADARRVKSSFSEGVIEIDADGV----AFVKDARSDTCSRNILRY-EDLAEYIELSRIKD 295
Query: 346 HFI 348
HFI
Sbjct: 296 HFI 298
>gi|339238573|ref|XP_003380841.1| DNA-directed RNA polymerases I and III subunit RPAC1 [Trichinella
spiralis]
gi|316976212|gb|EFV59540.1| DNA-directed RNA polymerases I and III subunit RPAC1 [Trichinella
spiralis]
Length = 277
Score = 149 bits (376), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 96/244 (39%), Positives = 138/244 (56%), Gaps = 35/244 (14%)
Query: 56 GAYASMGVDNSLQLDHFCNNFRVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMA 115
Y+ D + ++ + + +V+V+ + +M+ D + +DA NA RRIL+AE+PTMA
Sbjct: 15 NTYSITINDINWDVEKYAKHMKVKVMNIIDMEMQLDFVNVDAPFVNAIRRILLAEVPTMA 74
Query: 116 IEKVLIANNTSVIQDEVLAHRLGLIPIIVDPRLFEYMSENDTSNEKNTIVFKLHV---LC 172
IEKV + NT VI DEV AHRLGL+PI DPR F+Y ++++ E +T++F+L V +
Sbjct: 75 IEKVHMFQNTGVIADEVFAHRLGLLPIKADPRQFQYRTDDEPKAE-DTLIFELKVKSNVD 133
Query: 173 ERGGPRLTVKTNELKWLP-NGSELPLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIR 231
E R V ++ L+W P +G E + P P+ +
Sbjct: 134 EIENER--VCSSALEWKPIDGQEEKFKNCP-------PKV------------------VH 166
Query: 232 PMLDITIARLGPGQEIELEAHAVKGIGKTHAKWSPVATAWYRMLPEIVLLEDVEDEDAEK 291
P DI +A L GQEIE H KGIG+ HAK+SPVATA YR LPE+ L D DE+A K
Sbjct: 167 P--DILLAILKSGQEIECVCHCTKGIGRDHAKFSPVATASYRFLPELKFLRDFYDEEA-K 223
Query: 292 LVKT 295
LV++
Sbjct: 224 LVQS 227
>gi|391867820|gb|EIT77060.1| RNA polymerase I and III, subunit RPA40/RPC40 [Aspergillus oryzae
3.042]
Length = 290
Score = 149 bits (375), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 103/266 (38%), Positives = 148/266 (55%), Gaps = 39/266 (14%)
Query: 108 IAELPTMAIEKVLIANNTSVIQDEVLAHRLGLIPI--IVDP----RLFEYMSENDTS--- 158
+AE+P++AIE V + NNTSVIQDEVLA RLGLIP+ VD R F+ +E+D
Sbjct: 1 MAEVPSVAIEFVFVHNNTSVIQDEVLAQRLGLIPLKGSVDGINWMRWFKKATEDDPEGSD 60
Query: 159 -NEKNTIVFKLHVLCERGGPRLTVKTNELKWLPNGSELPLETKPDSNPSSKPRTYTSFSS 217
++ NTIV +L + C + P N+ P + +++ ++ T+
Sbjct: 61 PSDYNTIVLRLDIECTKN-PNADATEND----------PRKLYKNAHVYARDITFHPVGR 109
Query: 218 SQDLLP-EFSNNPIRPMLDITIARLGPGQEIELEAHAVKGIGKTHAKWSPVATAWYRMLP 276
+ E + P+ P DI IA+L PGQ+I+LE H +KGIG HAK+SPVATA YR+LP
Sbjct: 110 QEQFFTGEDAIQPVNP--DILIAKLRPGQKIDLEMHCIKGIGADHAKFSPVATASYRLLP 167
Query: 277 EIVLLEDVEDEDAEKLVKTCPVNVFDIEDI--------GS------GKKRATVAQPRACT 322
+I +L + EDA+K K P V +E + GS G+ +A V T
Sbjct: 168 DIQILRPILGEDAKKFAKCFPKGVIGLEPVTREEAAKQGSGYEGHEGETKAVVRDAFKDT 227
Query: 323 LCRECLRCGEEWEKRVSIRRVKDHFI 348
+ RECLR EE++ +V + RV+DHFI
Sbjct: 228 VSRECLR-HEEFQGKVKLGRVRDHFI 252
>gi|325182041|emb|CCA16494.1| DNAdirected RNA polymerase II 36 kDa polypeptide A putative [Albugo
laibachii Nc14]
Length = 319
Score = 149 bits (375), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 100/293 (34%), Positives = 154/293 (52%), Gaps = 53/293 (18%)
Query: 77 RVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHR 136
+VE++ L D ++F+L DA++ANA RR++IAE+PT+AI+ V I NTSV+ DE LAHR
Sbjct: 8 KVEILDLRDDFIKFELFETDASVANALRRVMIAEVPTLAIDLVTIEVNTSVMTDEFLAHR 67
Query: 137 LGLIPIIVDPRL------FEYMSENDTSNE--KNTIVFKLHVLCERGGPRLTVKTNELKW 188
LG+IP++ D L F Y + D ++ F+L V E+G L+V ++ LK
Sbjct: 68 LGMIPLLFDGGLEAFRQRFVYSQDCDCEEHCPNCSVEFQLDVRAEQG--MLSVTSDSLKS 125
Query: 189 LPNGSELPLETKPDSNPSSKPRTYTS---FSSSQDLLPEFSNNPIRPMLDITIARLGPGQ 245
+ +P +P ++S F+++QD + IA+LGPGQ
Sbjct: 126 V--------------DPYIRPVNFSSEEEFNNTQD-------------TGVIIAKLGPGQ 158
Query: 246 EIELEAHAVKGIGKTHAKWSPVATAWYRMLPEIVL----LEDVEDEDAEKLVKTCPVNVF 301
I L A A GIGK HAKW+PVA A + P+I L L E +L K+CP V+
Sbjct: 159 HIRLSAIAKLGIGKEHAKWAPVAVATFMYEPKITLNQAILSTYTPEQKAELYKSCPTEVY 218
Query: 302 DIEDIGSGKKRATVAQPRACTLCRECLRCGEEW------EKRVSIRRVKDHFI 348
+ ++ ++ T+A C C EC++ + + V+I+ +D FI
Sbjct: 219 ETDE---NYEQFTIANHMRCMYCDECVKVVNSYKDNPEDDAAVTIQMQEDRFI 268
>gi|407407741|gb|EKF31429.1| DNA-directed RNA polymerase, alpha subunit, putative [Trypanosoma
cruzi marinkellei]
Length = 393
Score = 148 bits (373), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 88/249 (35%), Positives = 135/249 (54%), Gaps = 32/249 (12%)
Query: 86 DDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRLGLIPIIVD 145
+ M FD+ I IAN FRR+++ E+P +A +++LI N SV+ DE+LAHR+GL+PI
Sbjct: 101 ETMTFDVERISPPIANMFRRLMMTEVPVLAFDRMLIEENDSVVPDEILAHRIGLVPIAGP 160
Query: 146 PRLFEYMSEN-----DTSNEKNTIVFKLHVLCERGGPRLTVKTNELKWLPNGSELPLETK 200
++++E+ D + + +VF+L R +V + +LKW P LP +
Sbjct: 161 VLKMQFVTESNQVGFDALDPQRVLVFELAAEGRRDAKSTSVYSGDLKWKP----LPGQ-- 214
Query: 201 PDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPMLDITIARLGPGQEIELEAHAVKGIGKT 260
++++ D F +P DI + +LGPGQ ++L A A+KGIG
Sbjct: 215 ------------EAWATGADEDRVFLVHP-----DIILTKLGPGQRLKLRAIALKGIGGV 257
Query: 261 HAKWSPVATAWYRMLPEIVLLEDVEDEDAEKLVKTCPVNVFDIEDIGSGKKRATVAQPRA 320
HAKW+PV+ +Y + I L E + + AEKL + CPV VF + + G + V
Sbjct: 258 HAKWTPVSVCFYELYTSIHLREPIRGDCAEKLQRICPVGVFGVNEEGESE----VVAVEN 313
Query: 321 CTLCRECLR 329
CTLCRECLR
Sbjct: 314 CTLCRECLR 322
>gi|71656797|ref|XP_816940.1| DNA-directed RNA polymerase, alpha subunit [Trypanosoma cruzi
strain CL Brener]
gi|70882101|gb|EAN95089.1| DNA-directed RNA polymerase, alpha subunit, putative [Trypanosoma
cruzi]
Length = 393
Score = 148 bits (373), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 88/249 (35%), Positives = 136/249 (54%), Gaps = 32/249 (12%)
Query: 86 DDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRLGLIPIIVD 145
+ M FD+ I IAN FRR+++ E+P +A +++LI N SV+ DE+LAHR+GL+PI
Sbjct: 101 ETMTFDVERISPPIANMFRRLMMTEVPVLAFDRMLIEENDSVVPDELLAHRIGLVPIAGP 160
Query: 146 PRLFEYMSEN-----DTSNEKNTIVFKLHVLCERGGPRLTVKTNELKWLPNGSELPLETK 200
++++E+ D + + +VF+L R +V + +LKW P LP +
Sbjct: 161 VLKMQFVTESNQVGFDALDPQRVLVFELAAEGRRDAKSTSVYSGDLKWKP----LPGQ-- 214
Query: 201 PDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPMLDITIARLGPGQEIELEAHAVKGIGKT 260
++++ D F +P DI + +LGPGQ ++L A A+KGIG
Sbjct: 215 ------------EAWATGADEDRVFLVHP-----DIILTKLGPGQRLKLRAIALKGIGGV 257
Query: 261 HAKWSPVATAWYRMLPEIVLLEDVEDEDAEKLVKTCPVNVFDIEDIGSGKKRATVAQPRA 320
HAKW+PV+ +Y + I L E + + A KL + CPV VF + + G + VA+
Sbjct: 258 HAKWTPVSVCFYELKTSIYLREPIRGDCATKLQRICPVGVFGVNEEGESE----VAEVEN 313
Query: 321 CTLCRECLR 329
CTLCRECLR
Sbjct: 314 CTLCRECLR 322
>gi|407847030|gb|EKG02938.1| DNA-directed RNA polymerase, alpha subunit, putative [Trypanosoma
cruzi]
Length = 393
Score = 148 bits (373), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 88/249 (35%), Positives = 136/249 (54%), Gaps = 32/249 (12%)
Query: 86 DDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRLGLIPIIVD 145
+ M FD+ I IAN FRR+++ E+P +A +++LI N SV+ DE+LAHR+GL+PI
Sbjct: 101 ETMTFDVERISPPIANMFRRLMMTEVPVLAFDRMLIEENDSVVPDELLAHRIGLVPIAGP 160
Query: 146 PRLFEYMSEN-----DTSNEKNTIVFKLHVLCERGGPRLTVKTNELKWLPNGSELPLETK 200
++++E+ D + + +VF+L R +V + +LKW P LP +
Sbjct: 161 VLKMQFVTESNQVGFDALDPQRVLVFELAAEGRRDAKSTSVYSGDLKWKP----LPGQ-- 214
Query: 201 PDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPMLDITIARLGPGQEIELEAHAVKGIGKT 260
++++ D F +P DI + +LGPGQ ++L A A+KGIG
Sbjct: 215 ------------EAWATGADEDRVFLVHP-----DIILTKLGPGQRLKLRAIALKGIGGV 257
Query: 261 HAKWSPVATAWYRMLPEIVLLEDVEDEDAEKLVKTCPVNVFDIEDIGSGKKRATVAQPRA 320
HAKW+PV+ +Y + I L E + + A KL + CPV VF + + G + VA+
Sbjct: 258 HAKWTPVSVCFYELKTSIYLREPIRGDCATKLQRICPVGVFGVNEEGESE----VAEVEN 313
Query: 321 CTLCRECLR 329
CTLCRECLR
Sbjct: 314 CTLCRECLR 322
>gi|71423439|ref|XP_812461.1| DNA-directed RNA polymerase, alpha subunit [Trypanosoma cruzi
strain CL Brener]
gi|70877243|gb|EAN90610.1| DNA-directed RNA polymerase, alpha subunit, putative [Trypanosoma
cruzi]
Length = 393
Score = 148 bits (373), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 88/249 (35%), Positives = 136/249 (54%), Gaps = 32/249 (12%)
Query: 86 DDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRLGLIPIIVD 145
+ M FD+ I IAN FRR+++ E+P +A +++LI N SV+ DE+LAHR+GL+PI
Sbjct: 101 ETMTFDVERISPPIANMFRRLMMTEVPVLAFDRMLIEENDSVVPDELLAHRIGLVPIAGP 160
Query: 146 PRLFEYMSEN-----DTSNEKNTIVFKLHVLCERGGPRLTVKTNELKWLPNGSELPLETK 200
++++E+ D + + +VF+L R +V + +LKW P LP +
Sbjct: 161 VLKMQFVTESNQVGFDALDPQRVLVFELAAEGRRDAKSTSVYSGDLKWKP----LPGQ-- 214
Query: 201 PDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPMLDITIARLGPGQEIELEAHAVKGIGKT 260
++++ D F +P DI + +LGPGQ ++L A A+KGIG
Sbjct: 215 ------------EAWATGADEDRVFLVHP-----DIILTKLGPGQRLKLRAIALKGIGGV 257
Query: 261 HAKWSPVATAWYRMLPEIVLLEDVEDEDAEKLVKTCPVNVFDIEDIGSGKKRATVAQPRA 320
HAKW+PV+ +Y + I L E + + A KL + CPV VF + + G + VA+
Sbjct: 258 HAKWTPVSVCFYELKTSIYLREPIRGDCATKLQRICPVGVFGVNEEGESE----VAEVEN 313
Query: 321 CTLCRECLR 329
CTLCRECLR
Sbjct: 314 CTLCRECLR 322
>gi|313236133|emb|CBY11457.1| unnamed protein product [Oikopleura dioica]
gi|313243610|emb|CBY42293.1| unnamed protein product [Oikopleura dioica]
Length = 355
Score = 147 bits (370), Expect = 9e-33, Method: Compositional matrix adjust.
Identities = 84/219 (38%), Positives = 125/219 (57%), Gaps = 46/219 (21%)
Query: 88 MEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRLGLIPIIVDPR 147
+EFD+ GID +++N RRI+IAE+P MA ++VLI NNT++IQDEVLAHRLGLIPI D R
Sbjct: 66 VEFDIRGIDPSMSNTLRRIMIAEVPQMAFDRVLIFNNTTLIQDEVLAHRLGLIPIKADFR 125
Query: 148 LFEYMSENDTSN-------------EKNTIVFKLHVLCERGGPRLT----VKTNELKWLP 190
F+ +E D ++ E ++++F V+ + V+++ELKW P
Sbjct: 126 QFKSRTEKDMTSIDCTKAAHVKGAKEDDSLLFHFKVIGKHQKNSTNHVQIVESSELKWSP 185
Query: 191 NGSELPLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPMLDITIARLGPGQEIELE 250
G++ + +++P F DITIA++ P Q I++E
Sbjct: 186 VGNQ---------------------KETMNVMPCFH--------DITIAKIKPKQFIDIE 216
Query: 251 AHAVKGIGKTHAKWSPVATAWYRMLPEIVLLEDVEDEDA 289
HA +GIG+ HAK+SPV TA+YR+LP I E + +DA
Sbjct: 217 LHAFRGIGRDHAKFSPVCTAFYRLLPTIEFTEPIRGDDA 255
>gi|195342596|ref|XP_002037886.1| GM18508 [Drosophila sechellia]
gi|194132736|gb|EDW54304.1| GM18508 [Drosophila sechellia]
Length = 331
Score = 147 bits (370), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 98/261 (37%), Positives = 138/261 (52%), Gaps = 46/261 (17%)
Query: 103 FRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRLGLIPIIVDPRLFEYMSENDT--SNE 160
RR++++++P+MAIEKV I NNTS+IQDEVLAHR+GL+P+ DPRLF Y +E T E
Sbjct: 66 LRRMMLSDVPSMAIEKVYIYNNTSIIQDEVLAHRMGLLPLRADPRLFAYRTEESTEAGTE 125
Query: 161 KNTIVFKLHVLCER---GGPRLT----------VKTNELKWLPNGSELPLETKPDSNPSS 207
++T+ F+L V C R G + V + LKWLP G + + +
Sbjct: 126 QDTLEFELKVKCSRRRDAGKDQSNFDDIYKNHKVYSGHLKWLPKGKQAQIYS-------- 177
Query: 208 KPRTYTSFSSSQDLLPEFSNNPIRPMLDITIARLGPGQEIELEAHAVKGIGKTHAKWSPV 267
E + N I DI IA+L PG E++L AVKG+G+ HAK+SPV
Sbjct: 178 ----------------ESAVNCIHD--DILIAQLRPGHELDLRLVAVKGLGRDHAKFSPV 219
Query: 268 ATAWYRMLPEIVLLEDVEDEDAEKLVKTCPVNVFDIEDIGSGKKRATVAQPRACTLCREC 327
ATA YR+LP I L +V +DA L V I++ + A V R T R
Sbjct: 220 ATATYRLLPLIKLNREVTGKDAYLLQNCFSPGVIGIDE----NETAYVKDARYDTCSRNV 275
Query: 328 LRCGEEWEKRVSIRRVKDHFI 348
R + V++ R++DH+I
Sbjct: 276 YRY-PQLNDAVTLARIRDHYI 295
>gi|256071190|ref|XP_002571924.1| DNA-directed RNA polymerase I [Schistosoma mansoni]
gi|353231403|emb|CCD77821.1| putative dna-directed RNA polymerase I [Schistosoma mansoni]
Length = 490
Score = 144 bits (364), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 103/285 (36%), Positives = 145/285 (50%), Gaps = 23/285 (8%)
Query: 56 GAYASMGVDNSLQLDHFCNNFRVEVIRLTK--DDMEFDLIGIDAAIANAFRRILIAELPT 113
G GV++ L F F VE+IR + D MEFD+I +D + ANA RRIL++E+P+
Sbjct: 16 GVLHHPGVEDRWSLSVFKKKFHVEIIRHGEESDTMEFDMINLDCSFANAVRRILVSEVPS 75
Query: 114 MAIEKVLIANNTSVIQDEVLAHRLGLIPIIVDPRLFEYMSENDTSNE-------KNTIVF 166
+AIE+V ++ NTS++ DEV+ HRLGLIP+ VDP+ F + + +++ K +V+
Sbjct: 76 LAIERVYVSQNTSIMPDEVMCHRLGLIPLAVDPKYFLFPTRKPPASDDLSGFDPKEHLVY 135
Query: 167 KLHVLCERGGPRLTVKTNELK--WLPNGSELPLETKPDSNPSSKPRTYTSFSSSQDLLPE 224
L V K + K LP LP+ S + + +D
Sbjct: 136 DLCVGFTHSSKDSHNKPEKDKDDTLPVAQYLPV--------YSSDLKWIPLAGQEDHF-N 186
Query: 225 FSNNPIRPMLDITIARLGPGQEIELEAHAVKGIGKTHAKWSPVATAWYRMLPEIVLLEDV 284
+N PI I I +L G EIE AVKGIG+ HAK+SPVA A+Y+ P I LL +
Sbjct: 187 INNPPIPVSSTILINKLALGDEIEARCVAVKGIGRDHAKFSPVAAAYYKFHPIIKLLRTI 246
Query: 285 EDEDAEKLVKTCPVNVFDIEDIGSGKKRATVAQPRACTLCRECLR 329
E E A KL K+ V I S +A V R RE +R
Sbjct: 247 EGEQAIKLQKSFASGVIGIN---SKTGQAFVDNARLDNGSREHMR 288
>gi|194374275|dbj|BAG57033.1| unnamed protein product [Homo sapiens]
Length = 150
Score = 141 bits (356), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 71/131 (54%), Positives = 98/131 (74%), Gaps = 6/131 (4%)
Query: 47 IHTENVMYSGAYASMGVDNSLQLDHFCNNFRVEVIRLTKDDMEFDLIGIDAAIANAFRRI 106
+HT + + G Y+ G D++ D F NFRV+V+ + ++ +EFD++GIDAAIANAFRRI
Sbjct: 24 VHTTD--FPGNYS--GYDDAWDQDRFEKNFRVDVVHMDENSLEFDMVGIDAAIANAFRRI 79
Query: 107 LIAELPTMAIEKVLIANNTSVIQDEVLAHRLGLIPIIVDPRLFEYMSENDTSN--EKNTI 164
L+AE+PTMA+EKVL+ NNTS++QDE+LAHRLGLIPI DPRLFEY ++ + EK TI
Sbjct: 80 LLAEVPTMAVEKVLVYNNTSIVQDEILAHRLGLIPIHADPRLFEYRNQGEKMKFWEKWTI 139
Query: 165 VFKLHVLCERG 175
++ V C+ G
Sbjct: 140 WVQILVDCDVG 150
>gi|429962182|gb|ELA41726.1| hypothetical protein VICG_01230 [Vittaforma corneae ATCC 50505]
Length = 298
Score = 139 bits (350), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 88/274 (32%), Positives = 146/274 (53%), Gaps = 41/274 (14%)
Query: 69 LDHFCNNFRVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVI 128
LD F NN ++++I T +EFD++ +IAN RRILI+++PTMAI V + N +V
Sbjct: 20 LDEFINNLQLKIISKTASSIEFDILNCHPSIANTLRRILISKVPTMAIHYVSVYENNTVF 79
Query: 129 QDEVLAHRLGLIPIIVDPRLFEYMSENDTSNEKNTIVFKLHVLCERGGPRLTVKTNELKW 188
DE +AHRLGLIP+ +P F Y + +T +N + F++ ++ L ++++++
Sbjct: 80 PDEYIAHRLGLIPLEANPEYFSYFKDEETF--ENVLNFRIDKTADKEPVNLM--SDDIEF 135
Query: 189 LPNGSELPLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPMLDITIARLGPGQEIE 248
+P + QD FS R ++ + ++ PG ++E
Sbjct: 136 VP-------------------------AEGQD---HFS---FRFKPNVLVCKMVPGNQVE 164
Query: 249 LEAHAVKGIGKTHAKWSPVATAWYRMLPEIVLLEDVEDEDAEKLVKTCPVNVFDIEDIGS 308
+ A+KG G+ HAKWSPV+ YR++P+I+L +D EDA++L V +I +
Sbjct: 165 MTFKAIKGRGEQHAKWSPVSLCSYRIMPKIILEKDFYGEDAKELQACFSPGVIEIIN--- 221
Query: 309 GKKRATVAQPRACTLCRECLRCGEEWEKRVSIRR 342
+A VA PR ++ RE LR E+++ V I R
Sbjct: 222 --NKAVVANPRLESMSREALR-HEKFKDSVKILR 252
>gi|332030550|gb|EGI70238.1| DNA-directed RNA polymerases I and III subunit RPAC1 [Acromyrmex
echinatior]
Length = 371
Score = 138 bits (348), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 83/185 (44%), Positives = 108/185 (58%), Gaps = 19/185 (10%)
Query: 88 MEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRLGLIPIIVDPR 147
MEFD+ G ++ NAFRR L++E+P+MAIEKV I NNTS+IQDEVLAHRLGLIP+ DPR
Sbjct: 1 MEFDISGCHTSLVNAFRRTLLSEVPSMAIEKVYIINNTSLIQDEVLAHRLGLIPLRADPR 60
Query: 148 LFEY----MSENDTSNEKNTIVFKLHVLCERGGPRLTVKTNELKWLPNGSELPLETKPDS 203
LFEY +DT ++ +T+ ++L V C N P S LP + +S
Sbjct: 61 LFEYSPNDKKTDDTVSDNDTLRYELKVTC-----------NINPQAPKNSRLPEDMYKNS 109
Query: 204 NPSSKPRTYTSFSSSQDLLPEFSNNPIRPML-DITIARLGPGQEIELEAHAVKGIGKTHA 262
SK + + +F I + DI I ++ PG EI L HAVKGIGK HA
Sbjct: 110 KVYSKDIKWVPIGRQAE---KFKAEQIGILENDILICKMRPGHEIHLFMHAVKGIGKDHA 166
Query: 263 KWSPV 267
K+SPV
Sbjct: 167 KFSPV 171
>gi|300122175|emb|CBK22749.2| unnamed protein product [Blastocystis hominis]
Length = 312
Score = 136 bits (343), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 93/261 (35%), Positives = 133/261 (50%), Gaps = 36/261 (13%)
Query: 75 NFRVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLA 134
N +E+ LT+D ++F L G+D +IAN RRI+IAE+P++AI V I NTSV+ D+ +A
Sbjct: 6 NKHIEITELTEDRLKFTLSGVDTSIANGLRRIMIAEVPSVAIRTVTIKENTSVLADDYIA 65
Query: 135 HRLGLIPI--IVDPRLFEYMSENDTS--NEKNTIVFKLHVLCERGGPRLTVKTNELKWLP 190
HRLGLIPI + D E + + S ++++ +L+ C P L V + LK L
Sbjct: 66 HRLGLIPIRHLGDDSSTEIVDYFEVSAPGNRSSVRLELNETCTGDRP-LNVTSKHLKSL- 123
Query: 191 NGSELPLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPMLDITIARLGPGQEIELE 250
NP P + ++SQ +N IR I L PGQ + +E
Sbjct: 124 -------------NPYYAP----AHATSQAEALAQNNEGIR------IVSLAPGQTLHVE 160
Query: 251 AHAVKGIGKTHAKWSPVATAWYRMLPEIVLLEDVED----EDAEKLVKTCPVNVFDIEDI 306
A+ G+GK HAKWSPV T + +P + L D+ D E +KLV +CP VF I
Sbjct: 161 CEAILGVGKEHAKWSPVGTVSMKYVPIVHLNRDLLDSKDFEFKQKLVDSCPRKVF---SI 217
Query: 307 GSGKKRATVAQPRACTLCREC 327
R T+ AC C +C
Sbjct: 218 NPDTNRVTIVNESACMFCGDC 238
>gi|168026615|ref|XP_001765827.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162683004|gb|EDQ69418.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 324
Score = 136 bits (342), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 104/281 (37%), Positives = 148/281 (52%), Gaps = 37/281 (13%)
Query: 81 IRLTKDD-MEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRLGL 139
IR KDD ++F+L DA+IANA RRI+IAE+PT+AI+ V I +N+SV+ DE LAHRLGL
Sbjct: 14 IRDIKDDVLKFELRDTDASIANALRRIMIAEVPTLAIDLVEIESNSSVLNDEFLAHRLGL 73
Query: 140 IPIIVDPRLFEYMS------ENDTSNEKNTIVFKLHVLCERGGPRLTVKTNELKWLPNGS 193
IPI+ D + +S + D E +I F L V C G L V + +L
Sbjct: 74 IPIVSDRAMEMRLSRDCDACDGDGRCEYCSIEFHLSVKC-TGDQTLDVTSLDL------- 125
Query: 194 ELPLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPMLDITIARLGPGQEIELEAHA 253
S+PS P ++ + F +N R +L I +L GQE++L A A
Sbjct: 126 -------VSSDPSIIPVDAAGRAAD---MGGFESNDTRGIL---IVKLRKGQELKLRAIA 172
Query: 254 VKGIGKTHAKWSPVATAWYRMLPEI----VLLEDVEDEDAEKLVKTCPVNVFDIEDIGSG 309
KGIGK HAKWSP AT ++ PEI L+E + E+ ++ + + P VF+++ +
Sbjct: 173 RKGIGKDHAKWSPAATVTFQYEPEIHINEALMETLTLEEKQEWIDSSPTKVFELDPV--- 229
Query: 310 KKRATVAQPRACTLCRECLRCGEEWEK--RVSIRRVKDHFI 348
++ V P A T E L+ E K V I +D FI
Sbjct: 230 SQQVVVVDPEAYTYDEEVLKKAEAMGKPGLVEIYSKEDSFI 270
>gi|349915757|dbj|GAA27694.1| DNA-directed RNA polymerases I and III subunit RPAC1 [Clonorchis
sinensis]
Length = 483
Score = 135 bits (341), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 91/269 (33%), Positives = 142/269 (52%), Gaps = 17/269 (6%)
Query: 47 IHTENVMY----SGAYASMGVDNSLQLDHFCNNFRVEVIRLTKDDMEFDLIGIDAAIANA 102
+H + +Y G G + F + F V +I ++ D +EFD++ ID + ANA
Sbjct: 4 VHNSSALYELKEHGIINHPGTEEEWSAQIFRSKFEVSIIDMS-DTLEFDMVHIDCSFANA 62
Query: 103 FRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRLGLIPIIVDPRLFEYMS----ENDTS 158
RRILIAE+P+++IE+V + NTSV+ DEVL HRLGLIP+ + PR + S E D
Sbjct: 63 LRRILIAEVPSISIERVYLFQNTSVMPDEVLCHRLGLIPLAIVPRHLIFPSRILPETDEL 122
Query: 159 NEKN---TIVFKLHVLCERGGPRLTVKTNELKWLPNGSELPLETKPDSNPSSKPRTYTSF 215
E N ++F V ++ + +++ +++ S+L L + S S +
Sbjct: 123 TEFNPMEHVIFDFKVSFKKSDLKGCSESSGKEFI---SDLNLPSVRSSAVYSSELKWVPL 179
Query: 216 SSSQDLLPEFSNNPIRPMLDITIARLGPGQEIELEAHAVKGIGKTHAKWSPVATAWYRML 275
++L E + P I I +L G EIE AVKG+G+ HAK+SPVA A+Y+ L
Sbjct: 180 PGQEELFGEDQPTVVSP--HILINKLAVGDEIEARCVAVKGVGRDHAKFSPVAAAYYKFL 237
Query: 276 PEIVLLEDVEDEDAEKLVKTCPVNVFDIE 304
P I LL +E ++A L ++ V I+
Sbjct: 238 PVIKLLRPIEGDEARLLQRSFAHGVIGID 266
>gi|162605758|ref|XP_001713394.1| DNA-directed RNA polymerase 40k chain [Guillardia theta]
gi|13794326|gb|AAK39703.1|AF083031_60 DNA-directed RNA polymerase 40k chain [Guillardia theta]
Length = 339
Score = 135 bits (339), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 79/260 (30%), Positives = 131/260 (50%), Gaps = 30/260 (11%)
Query: 86 DDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRLGLIPIIVD 145
+D + +L GI + I N+ RR ++A++ T++IEKV I N++V DE+++HRLGL+PI +
Sbjct: 60 NDCKINLKGISSLIINSIRRTIMADVKTLSIEKVYIYKNSTVFGDEIISHRLGLVPIFIS 119
Query: 146 PRLFEYMSENDTSNEKNTIVFKLHVLCERGGPRLTVKTNELKWLPNGSELPLETKPDSNP 205
L + EN N+ N I+ ++++ + L + E L
Sbjct: 120 TELLR-IYENRAKNDPNIIINLDINNNIYNKTKISIFSEMLNLMYKSIEFDL-------- 170
Query: 206 SSKPRTYTSFSSSQDLLPEFSNNPIRPML-DITIARLGPGQEIELEAHAVKGIGKTHAKW 264
+ N I P+ DI I ++ PGQEI E H + G HAK+
Sbjct: 171 -------------------YKNQLIFPVYRDILILKINPGQEIHCECHCLINSGLNHAKF 211
Query: 265 SPVATAWYRMLPEIVLLEDVEDEDAEKLVKTCPVNVFDIEDIGSGKKRATVAQPRACTLC 324
SPV T +YRM P + +L+++ D+ +K CP VF++E +G+ R V + CT C
Sbjct: 212 SPVGTIFYRMEPYVKILKEIISFDSSSFLKICPTGVFEVEKLGN-LSRIYVKNSKFCTFC 270
Query: 325 RECLRCGEEWEKRVSIRRVK 344
+EC++ + + + I R K
Sbjct: 271 KECIKMNFKSKCIIKIGRNK 290
>gi|66801649|ref|XP_629750.1| RNA polymerase II core subunit [Dictyostelium discoideum AX4]
gi|74851108|sp|Q54DH7.1|RPB3_DICDI RecName: Full=DNA-directed RNA polymerase II subunit rpb3;
Short=RNA polymerase II subunit 3; Short=RNA polymerase
II subunit B3; AltName: Full=DNA-directed RNA polymerase
II subunit C
gi|60463138|gb|EAL61332.1| RNA polymerase II core subunit [Dictyostelium discoideum AX4]
Length = 302
Score = 135 bits (339), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 92/280 (32%), Positives = 145/280 (51%), Gaps = 38/280 (13%)
Query: 78 VEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRL 137
+E++ + D + F L D ++ANA RR++IAE+PTM I+ V +N SV+ DE +AHRL
Sbjct: 14 LEILEIKNDSIIFILSNTDISVANALRRVMIAEVPTMCIDLVEFESNNSVLCDEFIAHRL 73
Query: 138 GLIPIIVDP-RLFEYMSENDTSN--EKNTIVFKLHVLCERGGPRLTVKTNELKWLPNGSE 194
GLIP++ D F Y + S+ ++ ++ +L+V C PR ++ L N +
Sbjct: 74 GLIPLVSDNIDKFCYTRDCSCSDRCDQCSVELRLNVKCTENRPRDVTSSDLLSQ--NSAV 131
Query: 195 LPLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPMLDITIARLGPGQEIELEAHAV 254
+P+ ++ TS +S Q +I I +L GQEI+L A A
Sbjct: 132 IPVSSQ-----------VTSSNSEQ---------------EIPIVKLRRGQEIKLRAIAK 165
Query: 255 KGIGKTHAKWSPVATAWYRMLPEIVL----LEDVEDEDAEKLVKTCPVNVFDIEDIGSGK 310
KG+GK HAKWSP A Y+ P IVL ++++ D+ E+ V +CP V+ S +
Sbjct: 166 KGVGKEHAKWSPSCVATYQFQPIIVLNQNRIDELTDQQKEEWVGSCPTKVYSYSPHQSTQ 225
Query: 311 KRATVAQPRACTLCRECLRCGEEWEK--RVSIRRVKDHFI 348
+ T+ P C C EC + E + K V + + +D FI
Sbjct: 226 Q-VTIEDPLRCVYCLECKKKAESFGKPDLVHLEQKQDKFI 264
>gi|298705011|emb|CBJ28486.1| conserved unknown protein [Ectocarpus siliculosus]
Length = 262
Score = 134 bits (337), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 91/246 (36%), Positives = 132/246 (53%), Gaps = 25/246 (10%)
Query: 77 RVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHR 136
+VE++ L +D +EF L D ++ANA RR++IAE+PTMAI+ V I +N+SV+QDE L+HR
Sbjct: 8 QVEIVDLREDFVEFVLSNTDTSVANALRRVMIAEVPTMAIDLVTIHDNSSVLQDEFLSHR 67
Query: 137 LGLIPIIVDPRL-FEYMSENDTSN--EKNTIVFKLHVLCERGGPRLTVKTNELKWLPNGS 193
LGLIP+ DP + +EY + D + +K + VF L V ++ L +
Sbjct: 68 LGLIPLAADPGVQYEYNYDCDCEDYCDKCSAVFTLDVSWDKKA---------LGRPEHMQ 118
Query: 194 ELPLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPMLDITIARLGPGQEIELEAHA 253
+ P+ SS PR + D +N+ I I IA+L GQ ++L A A
Sbjct: 119 DQPVHVTSADLVSSDPRLRAVHFAPSDQ----TNSDISQDAGIIIAKLAKGQRMQLTAVA 174
Query: 254 VKGIGKTHAKWSPVATAWYRMLPEIVLLEDVED----EDAEKLVKTCPVNVFDIEDIGSG 309
KGI K HAKWSPVA A Y+ P I + E+ E E + V+ CP V+ G
Sbjct: 175 KKGIAKEHAKWSPVAVATYKFEPVIEINEEKEALLTPEQKAEFVEICPAKVY-----GRD 229
Query: 310 KKRATV 315
+K T+
Sbjct: 230 EKSGTI 235
>gi|349806155|gb|AEQ18550.1| putative polymerase i polypeptide subunit [Hymenochirus curtipes]
Length = 159
Score = 132 bits (332), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 66/133 (49%), Positives = 97/133 (72%), Gaps = 6/133 (4%)
Query: 47 IHTENVMYSGAYASMGVDNSLQLDHFCNNFRVEVIRLTKDDMEFDLIGIDAAIANAFRRI 106
+HT + + G Y + D++ + F NF ++++ + D +EFD++GIDAA+AN FRRI
Sbjct: 13 VHTTD--FPGNYYNF--DDTWDQEKFEKNFHIDIVNMEGDTLEFDMVGIDAAVANTFRRI 68
Query: 107 LIAELPTMAIEKVLIANNTSVIQDEVLAHRLGLIPIIVDPRLFEYMSENDT-SNEKNTIV 165
L+AE+PT+A+EKVL+ NNTS+IQDE+LAHRLGLIPI DPRLFE+ + ++ E +T+
Sbjct: 69 LLAEVPTVAVEKVLVYNNTSIIQDEILAHRLGLIPIRADPRLFEFRNTDEGDGTEIDTLQ 128
Query: 166 FKLHVLCERGGPR 178
F+L+V C R PR
Sbjct: 129 FELNVKCTR-NPR 140
>gi|281211628|gb|EFA85790.1| RNA polymerase II core subunit [Polysphondylium pallidum PN500]
Length = 295
Score = 129 bits (324), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 89/282 (31%), Positives = 134/282 (47%), Gaps = 46/282 (16%)
Query: 78 VEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRL 137
+E++ + D + F L D ++ANA RR++IAE+PTM I+ V N SV+ DE +AHRL
Sbjct: 11 LEILEIKNDSITFILSNTDISVANALRRVMIAEVPTMCIDLVEFEANNSVLVDEFIAHRL 70
Query: 138 GLIPII---VDPRLFEYMSENDTSN--EKNTIVFKLHVLCERGGPRLTVKTNELKWLPNG 192
GLIP+ VD F Y + + + ++ FKL+ C
Sbjct: 71 GLIPLTSHKVDQ--FNYTRDCSCAERCDNCSVEFKLNARC-------------------- 108
Query: 193 SELPLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPMLDITIARLGPGQEIELEAH 252
N S T S D + ++ RP I I +L GQE++L A
Sbjct: 109 -----------NDHSYSVTSLDLLSQNDHVIPVGSSDGRPDTVIPIVKLHRGQEVKLRAI 157
Query: 253 AVKGIGKTHAKWSPVATAWYRMLPEIVL----LEDVEDEDAEKLVKTCPVNVFDIEDIGS 308
A KG+GK HAKWSP A Y+ P+IV+ ++++ D E+ V++CP NV+
Sbjct: 158 AKKGVGKEHAKWSPACVATYQFQPKIVINQNRMDELTDRQKEEWVQSCPANVYQFN--AH 215
Query: 309 GKKRATVAQPRACTLCRECLRCGEEWEK--RVSIRRVKDHFI 348
+++ T+ C C EC + + K VSI + D FI
Sbjct: 216 QRQQVTIEDQMRCMFCMECKKKADSLGKPDLVSIEQKTDKFI 257
>gi|290972439|ref|XP_002668960.1| predicted protein [Naegleria gruberi]
gi|284082499|gb|EFC36216.1| predicted protein [Naegleria gruberi]
Length = 324
Score = 129 bits (324), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 93/273 (34%), Positives = 141/273 (51%), Gaps = 50/273 (18%)
Query: 74 NNFRVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVL 133
N ++ ++ LT + +F L +D +IANA RRI+IAE+PT+AI+ V N+SV+ DE +
Sbjct: 9 NKAQLSILALTDEYCKFKLSNVDTSIANALRRIMIAEVPTLAIDLVEFEMNSSVLHDEFI 68
Query: 134 AHRLGLIPII-VDPRLFEYMSENDTSN--EKNTIVFKLHVLCERGGPRLTVKTNELKWLP 190
AHRLGLIP+ ++ F Y S+ + EK ++ LHV C +T +N+L
Sbjct: 69 AHRLGLIPLTCLNINSFSYTSDCSCTGHCEKCSVELTLHVKCTESHRDVT--SNDL---- 122
Query: 191 NGSELPLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPMLDITIARLGPGQEIELE 250
+NPS P T + ++S+D E + ITI +L GQEI+L+
Sbjct: 123 ----------ISNNPSCAPCTLS--ATSRDNENEHNG--------ITIVKLKRGQEIKLK 162
Query: 251 AHAVKGIGKTHAKWSPVATAWYRMLPEIVLLE------DVEDEDAE----------KLVK 294
A A KG+GK HAKWSPVA Y ++P+I + + D+D + K +
Sbjct: 163 AIAKKGVGKGHAKWSPVAITTYYIVPDIRIKGCQNTPVNPSDQDNQTEVPAADWIGKFIN 222
Query: 295 TCPVNVFDIEDIGSGKKRATVAQPRACTLCREC 327
+CP VF + + R + + CT C EC
Sbjct: 223 SCPTKVFSV----TNDDRLIIDLDK-CTYCNEC 250
>gi|328868426|gb|EGG16804.1| RNA polymerase II core subunit [Dictyostelium fasciculatum]
Length = 296
Score = 129 bits (323), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 92/281 (32%), Positives = 140/281 (49%), Gaps = 42/281 (14%)
Query: 78 VEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRL 137
+E++ L D + F L D ++ANA RRI+IAE+PTMAI+ V NTSV+ DE +AHRL
Sbjct: 11 LEILELKNDSITFVLSNTDISVANALRRIMIAEVPTMAIDLVEFQTNTSVLCDEFIAHRL 70
Query: 138 GLIPIIVDP-RLFEYMSENDTSNE--KNTIVFKLHVLC-ERGGPRLTVKTNELKWLPNGS 193
GLIP+ F Y E + + ++ F L+V C +R L V +++L+ N +
Sbjct: 71 GLIPLTSHKVESFNYTRECSCTERCTECSVEFNLNVKCLDRA---LEVTSSDLQS-QNDN 126
Query: 194 ELPLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPMLDITIARLGPGQEIELEAHA 253
P+ S+ Y + S + I I RL GQE++L+A A
Sbjct: 127 VFPV--------SASDNVYGNTSGA-----------------IPIVRLRKGQEVKLKAIA 161
Query: 254 VKGIGKTHAKWSPVATAWYRMLPEIVL----LEDVEDEDAEKLVKTCPVNVFDIEDIGSG 309
KG+GK HAKW P A Y+ P+IV+ +++ D ++ + +CP NVF
Sbjct: 162 KKGVGKEHAKWIPTCIATYQFQPKIVVNQNRFDELSDRQKDEWISSCPTNVF---KYNPN 218
Query: 310 KKRATVAQPRACTLCRECLRCGEEWEK--RVSIRRVKDHFI 348
+ C C+EC++ E K VS+ + +D FI
Sbjct: 219 SMQQVTTDDLKCMFCQECVKKSEALGKPDLVSVEQKQDRFI 259
>gi|145528814|ref|XP_001450201.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124417801|emb|CAK82804.1| unnamed protein product [Paramecium tetraurelia]
Length = 308
Score = 128 bits (322), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 87/281 (30%), Positives = 135/281 (48%), Gaps = 62/281 (22%)
Query: 77 RVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHR 136
R+E++ L+ + +F G D +IANA RR++IAE+P MAI V I NTS + DE LA R
Sbjct: 13 RIEILELSDEKCKFSFEG-DLSIANAIRRVMIAEVPVMAIHFVDIIENTSPLSDEFLAQR 71
Query: 137 LGLIPII---VDPRLFEYMSENDT-SNEKNTIVFKLHVLCERGGPRLTVKTNELKWLPNG 192
LGLIP++ D +++++ ++ D+ ++K +VF L N
Sbjct: 72 LGLIPLVSYAADSKMYDWEADADSIDDQKTKVVFTLR-------------------QKNL 112
Query: 193 SELPLETKPDSNPSSKPRTYTSFSSSQDLLPEFSN---NPIRPM----------LDITIA 239
++ PLE +SQ L PEF IRP+ + I I
Sbjct: 113 NDAPLEI-----------------TSQHLEPEFGQVGEMAIRPVRMFSPINGKEVGIPIT 155
Query: 240 RLGPGQEIELEAHAVKGIGKTHAKWSPVATAWYRMLPEIVL----LEDVEDEDAEKLVKT 295
RLG Q + + HA+KG GK HAKW+P+ A +R E+ + + + + + +
Sbjct: 156 RLGKNQSVHVRCHALKGFGKMHAKWTPINIATFRHEAELNFDHSQTQSLSLFEKQSIRDS 215
Query: 296 CPVNVFDIEDIGSGKKRATVAQPRACTLCRECLRCGEEWEK 336
CP+NVF ++ + V C C EC+RC E +K
Sbjct: 216 CPMNVFAMD----ANQDLIVNAIEKCVFCEECIRCAESMKK 252
>gi|348687896|gb|EGZ27710.1| hypothetical protein PHYSODRAFT_554134 [Phytophthora sojae]
Length = 242
Score = 128 bits (321), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 87/234 (37%), Positives = 124/234 (52%), Gaps = 24/234 (10%)
Query: 77 RVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHR 136
++E+ L D + F+L DA++ANA RR++I+E+PT+AI+ V I NTSV+ DE LAHR
Sbjct: 8 KIEIQELRDDFIRFELSETDASVANAIRRVMISEVPTLAIDLVSIEINTSVMTDEFLAHR 67
Query: 137 LGLIPIIVDPRLFEYMSENDTSNEKNTIVFKLHVLCERGGPRLTVKTNELKWLPNGS-EL 195
LG+IP+ D L N + V+ C+ P +V+ + NG +
Sbjct: 68 LGMIPLNFDGGL---------ENFRQRFVYSADCDCDENCPNCSVEFSLDVTADNGVLSV 118
Query: 196 PLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPMLDITIARLGPGQEIELEAHAVK 255
E S+P +P +FSS ++L NN + IA+LGPGQ + L A A
Sbjct: 119 TSEALKSSDPYIRP---VNFSSEEEL-----NNTQDS--GVIIAKLGPGQRLRLSAIAKL 168
Query: 256 GIGKTHAKWSPVATAWYRMLPEIVL----LEDVEDEDAEKLVKTCPVNVFDIED 305
GIGK HAKWSPVA A Y P I L L E +L K+CP V++ ++
Sbjct: 169 GIGKEHAKWSPVAVATYMYDPIITLNQAVLSTYTPEQKAELYKSCPTEVYETDE 222
>gi|330805244|ref|XP_003290595.1| RNA polymerase II core subunit [Dictyostelium purpureum]
gi|325079268|gb|EGC32876.1| RNA polymerase II core subunit [Dictyostelium purpureum]
Length = 303
Score = 128 bits (321), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 91/294 (30%), Positives = 148/294 (50%), Gaps = 41/294 (13%)
Query: 66 SLQLDHFCNNFRVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNT 125
SL + ++++ + + + F L D ++ANA RR++IAE+PTM+I+ V N
Sbjct: 2 SLSVTQLTRQPELDILEIKNESIVFTLSNTDISVANALRRVMIAEVPTMSIDLVEFEANN 61
Query: 126 SVIQDEVLAHRLGLIPIIVDP-RLFEYMSENDTSN--EKNTIVFKLHVLCERGGPRLTVK 182
SV+ DE +AHRLGLIP++ D F Y + S ++ ++ FKL+V C P + V
Sbjct: 62 SVLCDEFIAHRLGLIPLVSDNVDKFNYTRDCSCSERCDQCSVEFKLNVKCSNQRP-IDVT 120
Query: 183 TNELKWLP--NGSELPLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPMLDITIAR 240
+++L + N S +P+ ++ + RT D +P I +
Sbjct: 121 SSDLIVVSNNNNSVIPVSSQ------TTERT--------DEIP--------------IVK 152
Query: 241 LGPGQEIELEAHAVKGIGKTHAKWSPVATAWYRMLPEIVL----LEDVEDEDAEKLVKTC 296
L GQE+ L A A KG+GK HAKWSP A Y+ P + + ++++ D+ E+ V +C
Sbjct: 153 LRQGQELRLRAIAKKGVGKEHAKWSPSCIATYQFQPIVTINQNRMDELSDKQKEEWVGSC 212
Query: 297 PVNVFDIEDIGSGKKRATVAQPRACTLCRECLRCGEEWEK--RVSIRRVKDHFI 348
P VF + +V +P C C EC + E + K +SI + +D FI
Sbjct: 213 PTKVFGYSPHNQSQP-VSVDEPMRCMYCLECKKKAEAFGKPDLISIEQKQDKFI 265
>gi|301093788|ref|XP_002997739.1| DNA-directed RNA polymerase II 36 kDa polypeptide A [Phytophthora
infestans T30-4]
gi|262109988|gb|EEY68040.1| DNA-directed RNA polymerase II 36 kDa polypeptide A [Phytophthora
infestans T30-4]
Length = 241
Score = 127 bits (318), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 87/234 (37%), Positives = 124/234 (52%), Gaps = 24/234 (10%)
Query: 77 RVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHR 136
+++V L D + F+L DA++ANA RR++I+E+PT+AI+ V I NTSV+ DE LAHR
Sbjct: 8 KIDVQELRDDFIRFELSETDASVANAIRRVMISEVPTLAIDLVSIEINTSVMTDEFLAHR 67
Query: 137 LGLIPIIVDPRLFEYMSENDTSNEKNTIVFKLHVLCERGGPRLTVK-TNELKWLPNGSEL 195
LG+IP+ D L N + V+ C+ P +V+ T ++ +
Sbjct: 68 LGMIPLNFDGGL---------ENFRQRFVYSQDCDCDENCPNCSVEFTLDVTADSGVLSV 118
Query: 196 PLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPMLDITIARLGPGQEIELEAHAVK 255
E S+P +P +FSS ++L NN + IA+LGPGQ + L A A
Sbjct: 119 TSEALKSSDPYIRP---VNFSSEEEL-----NNTQDS--GVIIAKLGPGQRLRLSAIAKL 168
Query: 256 GIGKTHAKWSPVATAWYRMLPEIVL----LEDVEDEDAEKLVKTCPVNVFDIED 305
GIGK HAKWSPVA A Y P I L L E +L K+CP VF+ ++
Sbjct: 169 GIGKEHAKWSPVAVATYMYDPIITLNQAVLSTYSPEQKAELYKSCPTEVFETDE 222
>gi|260803742|ref|XP_002596748.1| hypothetical protein BRAFLDRAFT_58082 [Branchiostoma floridae]
gi|229282008|gb|EEN52760.1| hypothetical protein BRAFLDRAFT_58082 [Branchiostoma floridae]
Length = 290
Score = 126 bits (316), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 71/127 (55%), Positives = 87/127 (68%), Gaps = 5/127 (3%)
Query: 32 IEFQRTRVQCNLDAPIHTENVMYSGAYASMGVDNSLQLDHFCNNFRV--EVIRLTKDDME 89
+E RTRV I+T + + G YA G D++ L F +V E + ++E
Sbjct: 4 LEQIRTRVTLTEHEVINTHSTDFPGNYA--GYDDTWSLAKF-EEVKVPSEHRVVEGSELE 60
Query: 90 FDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRLGLIPIIVDPRLF 149
FD++GIDAAIANAFRRIL+AE+PTMAIEKV + NNTS+IQDEVLAHRLGLIPI DPRLF
Sbjct: 61 FDMVGIDAAIANAFRRILLAEVPTMAIEKVFVHNNTSIIQDEVLAHRLGLIPIHADPRLF 120
Query: 150 EYMSEND 156
EY E D
Sbjct: 121 EYRQEGD 127
>gi|255082502|ref|XP_002504237.1| dna-directed RNA polymerase II polypeptide a [Micromonas sp.
RCC299]
gi|226519505|gb|ACO65495.1| dna-directed RNA polymerase II polypeptide a [Micromonas sp.
RCC299]
Length = 331
Score = 125 bits (315), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 94/280 (33%), Positives = 143/280 (51%), Gaps = 22/280 (7%)
Query: 80 VIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRLGL 139
V +T+D ++F L G D +IANA RR++IAE+PT+AI+ V + N+S + DE +AHRLGL
Sbjct: 17 VQEMTEDTIKFVLTGTDTSIANALRRVIIAEVPTIAIDLVEVIENSSCLCDEFIAHRLGL 76
Query: 140 IPIIVDPRL-----FEYMSENDTSNEKNTIVFKLHVLCERGGPRLTVKTNELKWLPNGSE 194
IP++ ++Y +++T + + +L V C V +N+L L NG
Sbjct: 77 IPLVSHKAADMEFPYDYAGDDETVTD---VPIELRVKCVSDQTE-DVTSNDL--LINGDY 130
Query: 195 LPLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPMLDITIARLGPGQEIELEAHAV 254
+T + R + ++S P + I I +L QEI + A
Sbjct: 131 TQYDTVKPVHYRPSGRAFGDATASG--APADGSQADGDKHPILILKLRKNQEINMRCVAR 188
Query: 255 KGIGKTHAKWSPVATAWYRMLPEIVLLED----VEDEDAEKLVKTCPVNVFDIEDIGSGK 310
KG+G+ HAKW PVATA YR PEI + ED + +E+ K V++ P VF D
Sbjct: 189 KGVGRDHAKWQPVATAVYRFEPEITINEDLMATLTEEEKIKFVESSPTPVFRYND---QT 245
Query: 311 KRATVAQPRACTLCRECLRCGEEWEK--RVSIRRVKDHFI 348
++ V P + T ECL+ E+ K V IR +D F+
Sbjct: 246 RKVEVNMPESYTYDGECLKWAEDMGKPGLVDIRAKEDTFL 285
>gi|161899301|ref|XP_001712877.1| DNA-directed RNA polymerase I 40KDa subunit [Bigelowiella natans]
gi|75756371|gb|ABA27265.1| DNA-directed RNA polymerase I 40KDa subunit [Bigelowiella natans]
Length = 293
Score = 125 bits (314), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 70/211 (33%), Positives = 117/211 (55%), Gaps = 17/211 (8%)
Query: 76 FRVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAH 135
F+ +V+ L ME +++G+D++I NA RRIL++E+ T+AIE + + NTS++ D +LAH
Sbjct: 28 FQFKVLVLNNFFMEIEIVGLDSSIINAMRRILLSEIATIAIEDIYVFENTSILNDNILAH 87
Query: 136 RLGLIPIIVDPRLFEYMSENDTSNEKNTIVFKLHVLCERGGPRLT--VKTNELKWLPNGS 193
R+GLIP+ ++P+ ++ ++ N++V L RLT + + + GS
Sbjct: 88 RIGLIPLRINPKQIQFQKMYCLKDQTNSVVLILKNSNFCNSFRLTKDIFCKDFSYRRYGS 147
Query: 194 ELPLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPMLDITIARLGPGQEIELEAHA 253
+P ++ R Y FS QD++ + N DI I +L P Q + LEAH
Sbjct: 148 LIPHQS----------RVY--FSIKQDIVKK---NSFLTFEDILITKLKPKQLLFLEAHC 192
Query: 254 VKGIGKTHAKWSPVATAWYRMLPEIVLLEDV 284
KG H+K+SPVA AWY +L++++
Sbjct: 193 KKGYSTQHSKYSPVAAAWYLYYSTTILIKNL 223
>gi|146169387|ref|XP_001471367.1| DNA-directed rna polymerase II subunit [Tetrahymena thermophila]
gi|116575|sp|P16925.1|CNJC_TETTH RecName: Full=Conjugation stage-specific protein
gi|2654270|emb|CAA44194.1| RNA polymerase subunit [Tetrahymena thermophila]
gi|146145111|gb|EDK31657.1| DNA-directed rna polymerase II subunit [Tetrahymena thermophila
SB210]
Length = 310
Score = 124 bits (312), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 94/287 (32%), Positives = 144/287 (50%), Gaps = 35/287 (12%)
Query: 78 VEVIRLTKDDME-----FDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEV 132
+E I+LT ++E F L D ++AN+ RRIL+AE+ T+AI V + NTS + DE
Sbjct: 1 MEGIKLTLTNLEEFKCEFTLENCDISLANSLRRILLAEIETIAIHNVKVYENTSSLPDEY 60
Query: 133 LAHRLGLIPI---IVDPRLFEYMSENDTSNEKNTIVFKLHVLCERGGPRLTVKTNELKWL 189
+AHRLGLIP+ VD + + ++ TI F L R++ TNE+ +
Sbjct: 61 IAHRLGLIPLNSAKVDDYNYIWNCNCQGECDRCTIHFDL---------RVSNFTNEVLEV 111
Query: 190 PNGSELPLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPMLDITIARLGPGQEIEL 249
+ L L+ + D R +S +D E+ N + + I I +L GQ+I
Sbjct: 112 ---TSLDLKQRQDHTDEDAVRPIKVYSILRD---EYGN---KREVGIPIIKLSKGQQIHF 162
Query: 250 EAHAVKGIGKTHAKWSPVATAWYRMLPEIVLLEDVEDEDAEK---LVKTCPVNVFDIEDI 306
E A KGIGK H+KW+PV + + + PEI+ +++++ D E+ LV CP VF I
Sbjct: 163 ECEAQKGIGKMHSKWNPVCISTFSVEPEIIFDQEIQNLDIEQKKALVNACPTKVF---GI 219
Query: 307 GSGKKRATVAQPRACTLCRECL-RCGEEWE--KRVSIRRVKDHFICK 350
V C C EC+ +C E+++ K + I KD F K
Sbjct: 220 NPHTNTLEVQDHMKCMYCEECVYKCAEDFQKPKLIKIDHKKDKFFFK 266
>gi|242048618|ref|XP_002462055.1| hypothetical protein SORBIDRAFT_02g014460 [Sorghum bicolor]
gi|241925432|gb|EER98576.1| hypothetical protein SORBIDRAFT_02g014460 [Sorghum bicolor]
Length = 328
Score = 124 bits (310), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 94/284 (33%), Positives = 137/284 (48%), Gaps = 29/284 (10%)
Query: 77 RVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHR 136
RV + L D +F+L DA++ANA RR++IAE+PT+AI+ V I N+SV+ DE +AHR
Sbjct: 14 RVRIRDLKDDYAKFELRDTDASMANALRRVMIAEVPTVAIDLVEIEVNSSVLNDEFIAHR 73
Query: 137 LGLIPIIVDPRLFEYMS------ENDTSNEKNTIVFKLHVLCERGGPRLTVKTNELKWLP 190
LGLIP+ + S + D S E ++ F L L V +N+L+ +
Sbjct: 74 LGLIPLTSAAAMQMRFSRDCDACDGDGSCEYCSVEFHLAARATDSDQTLEVTSNDLRSM- 132
Query: 191 NGSELPLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPMLDITIARLGPGQEIELE 250
P P + R Y D ++N R +L I +L GQE+ L
Sbjct: 133 ---------DPKVCPVDQARAYQQALGGTDPFGANTSNENRGIL---IVKLRRGQELRLR 180
Query: 251 AHAVKGIGKTHAKWSPVATAWYRMLPEIV----LLEDVEDEDAEKLVKTCPVNVFDIEDI 306
A A KGIGK HAKWSP AT + P+I L+E + E+ +L+++ P VF ++
Sbjct: 181 AIARKGIGKDHAKWSPAATVTFMYEPDIRINEELMETLTVEERRRLIESSPTKVFKLD-- 238
Query: 307 GSGKKRATVAQPRACTLCRECLRCGEEWEK--RVSIRRVKDHFI 348
+ V A T E ++ E K V I +D FI
Sbjct: 239 --SANQVVVDNAEAYTYDDEVIKHAEALGKPGLVEINAKEDSFI 280
>gi|224105591|ref|XP_002313865.1| predicted protein [Populus trichocarpa]
gi|222850273|gb|EEE87820.1| predicted protein [Populus trichocarpa]
Length = 346
Score = 124 bits (310), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 97/281 (34%), Positives = 140/281 (49%), Gaps = 36/281 (12%)
Query: 81 IRLTKDD-MEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRLGL 139
IR KDD ++F+L DA++ANA RR++IAE+PT+AI+ V I N+SV+ DE +AHRLGL
Sbjct: 14 IREMKDDYLKFELRETDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFIAHRLGL 73
Query: 140 IPIIVDPRLFEYMS------ENDTSNEKNTIVFKLHVLCERGGPRLTVKTNELKWLPNGS 193
IP+ + + S + D E ++ F L C +T +T ++
Sbjct: 74 IPLTSERAMGMRFSRDCDACDGDGQCEYCSVEFHLRAKC------ITDQTLDV------- 120
Query: 194 ELPLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPMLDITIARLGPGQEIELEAHA 253
T D S FS D F + + I I +L GQE+ L A A
Sbjct: 121 -----TSKDLYSSDHAVIPVDFSDPSDANDPFDHTETQR--GIIIVKLRRGQELRLRAIA 173
Query: 254 VKGIGKTHAKWSPVATAWYRMLPEIVLLEDVED----EDAEKLVKTCPVNVFDIEDIGSG 309
KGIGK HAKWSP AT + PEI + ED+ + E+ +++ P VFDI+ +
Sbjct: 174 RKGIGKDHAKWSPAATVTFMYEPEIHINEDLMETLTLEEKLSWIESSPTKVFDIDKV--- 230
Query: 310 KKRATVAQPRACTLCRECLRCGEEWEKR--VSIRRVKDHFI 348
++ V P A T E ++ E KR + IR +D FI
Sbjct: 231 TQQVVVVDPEAYTYDDEVIKKAEAMGKRGLIDIRAKEDSFI 271
>gi|226529628|ref|NP_001149261.1| LOC100282883 [Zea mays]
gi|195625852|gb|ACG34756.1| DNA-directed RNA polymerase II 36 kDa polypeptide A [Zea mays]
gi|223974247|gb|ACN31311.1| unknown [Zea mays]
gi|414588991|tpg|DAA39562.1| TPA: DNA-directed RNA polymerase II polypeptide A [Zea mays]
Length = 328
Score = 123 bits (309), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 94/284 (33%), Positives = 138/284 (48%), Gaps = 29/284 (10%)
Query: 77 RVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHR 136
RV + L D +F+L DA++ANA RR++IAE+PT+AI+ V I N+SV+ DE +AHR
Sbjct: 14 RVRIRELKDDYAKFELRDTDASMANALRRVMIAEVPTVAIDLVEIEVNSSVLNDEFIAHR 73
Query: 137 LGLIPIIVDPRLFEYMS------ENDTSNEKNTIVFKLHVLCERGGPRLTVKTNELKWLP 190
LGLIP+ + S + D S E ++ F L V L V +N+L+ +
Sbjct: 74 LGLIPLTSAAAMQMRFSRDCDACDGDGSCEYCSVEFHLSVHATDSDQTLEVTSNDLRSM- 132
Query: 191 NGSELPLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPMLDITIARLGPGQEIELE 250
P P + R Y D ++N R +L I +L GQE+ L
Sbjct: 133 ---------DPKVCPVDQARAYQHALGGTDPFGANASNENRGIL---IVKLRRGQELRLR 180
Query: 251 AHAVKGIGKTHAKWSPVATAWYRMLPEIV----LLEDVEDEDAEKLVKTCPVNVFDIEDI 306
A A KGIGK HAKWSP AT + P+I L+E + E+ L+++ P VF+++
Sbjct: 181 AIARKGIGKDHAKWSPAATVTFMYEPDIRINEELMETLTVEERISLIESSPTKVFELD-- 238
Query: 307 GSGKKRATVAQPRACTLCRECLRCGEEWEK--RVSIRRVKDHFI 348
+ V A T E ++ E K V I +D F+
Sbjct: 239 --SANQVVVKNAEAYTYDDEVIKHAEAIGKPGLVEITAKEDSFV 280
>gi|340058077|emb|CCC52431.1| putative DNA-directed RNA polymerase, alpha subunit [Trypanosoma
vivax Y486]
Length = 389
Score = 123 bits (309), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 74/225 (32%), Positives = 119/225 (52%), Gaps = 35/225 (15%)
Query: 73 CNNFRVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEV 132
C RVE I FD+ + IAN FRR+++ E+P +A +++LI N S++ DE+
Sbjct: 92 CTTRRVETI-------TFDMDHVSPPIANMFRRLMLTEVPVLAFDRILIEENDSIMPDEL 144
Query: 133 LAHRLGLIPIIVDPRLFEYMSEN-----DTSNEKNTIVFKLHVLCERGGPRLTVKTNELK 187
LAHR+GL+P+ Y++++ D + ++F+L V RG +V + +LK
Sbjct: 145 LAHRIGLVPVAGPVSRIHYVTDSQQISFDALDPTRVLLFELDVEGRRGVQATSVYSGDLK 204
Query: 188 WLPNGSELPLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPMLDITIARLGPGQEI 247
W P S+ P T S D + F +P DI + RLGPGQ +
Sbjct: 205 WRPLPSQEPWGT----------------GQSDDRV--FLVHP-----DIVLTRLGPGQRL 241
Query: 248 ELEAHAVKGIGKTHAKWSPVATAWYRMLPEIVLLEDVEDEDAEKL 292
+L A A+KGIG HAKW+PV+ +Y M+ E+ +++ + ++KL
Sbjct: 242 KLRAIALKGIGAVHAKWAPVSACYYEMMTEVDPVDETACDQSKKL 286
>gi|414588990|tpg|DAA39561.1| TPA: hypothetical protein ZEAMMB73_135001 [Zea mays]
Length = 260
Score = 123 bits (309), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 84/238 (35%), Positives = 123/238 (51%), Gaps = 23/238 (9%)
Query: 77 RVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHR 136
RV + L D +F+L DA++ANA RR++IAE+PT+AI+ V I N+SV+ DE +AHR
Sbjct: 14 RVRIRELKDDYAKFELRDTDASMANALRRVMIAEVPTVAIDLVEIEVNSSVLNDEFIAHR 73
Query: 137 LGLIPIIVDPRLFEYMS------ENDTSNEKNTIVFKLHVLCERGGPRLTVKTNELKWLP 190
LGLIP+ + S + D S E ++ F L V L V +N+L+ +
Sbjct: 74 LGLIPLTSAAAMQMRFSRDCDACDGDGSCEYCSVEFHLSVHATDSDQTLEVTSNDLRSM- 132
Query: 191 NGSELPLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPMLDITIARLGPGQEIELE 250
P P + R Y D ++N R +L I +L GQE+ L
Sbjct: 133 ---------DPKVCPVDQARAYQHALGGTDPFGANASNENRGIL---IVKLRRGQELRLR 180
Query: 251 AHAVKGIGKTHAKWSPVATAWYRMLPEIV----LLEDVEDEDAEKLVKTCPVNVFDIE 304
A A KGIGK HAKWSP AT + P+I L+E + E+ L+++ P VF+++
Sbjct: 181 AIARKGIGKDHAKWSPAATVTFMYEPDIRINEELMETLTVEERISLIESSPTKVFELD 238
>gi|159489602|ref|XP_001702786.1| DNA-directed RNA polymerase II, 36 kDa polypeptide [Chlamydomonas
reinhardtii]
gi|158280808|gb|EDP06565.1| DNA-directed RNA polymerase II, 36 kDa polypeptide [Chlamydomonas
reinhardtii]
Length = 275
Score = 123 bits (308), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 98/284 (34%), Positives = 143/284 (50%), Gaps = 47/284 (16%)
Query: 78 VEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRL 137
+ V L D M F+L D + ANA RR ++AE+PT+AI+ V + NNT+V+ DE LAHRL
Sbjct: 15 ISVRTLEPDYMVFELKNTDPSSANALRRAMVAEVPTIAIDLVEMENNTTVLNDEFLAHRL 74
Query: 138 GLIPIIVD-----PRLFEYMSENDTSNEKNTIVFKLHVLCERGGPRLTVKTNELKWLPNG 192
GLIP++ R FE+ +ND F L V+CE+ G + V +N+L
Sbjct: 75 GLIPLVSRNAVYWKRPFEWSGDNDIIE----TAFSLDVMCEQEGV-MDVTSNDL------ 123
Query: 193 SELPLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPMLDITIARLGPGQEIELEAH 252
+PLE PD+ P Y S + +P I I +L GQ ++L A
Sbjct: 124 --VPLE--PDA--GVVPVNYHSATE-------------KP---IVICKLRRGQHLKLVAR 161
Query: 253 AVKGIGKTHAKWSPVATAWYRMLPEIVL----LEDVEDEDAEKLVKTCPVNVFDIEDIGS 308
A KGIGK HAK+ PVATA ++ +I L + D+ D++ + V + P F I
Sbjct: 162 ARKGIGKDHAKFIPVATAVFQYKAQITLSASAMADMTDDEKQAFVHSDPSKTFKFNPI-- 219
Query: 309 GKKRATVAQPRACTLCRECLRCGEEWEK--RVSIRRVKDHFICK 350
+ V + EC+ E + V+IR+V+DHFI +
Sbjct: 220 -TRMIEVENEESYMYDEECVVKARELGRPDLVTIRQVQDHFIFR 262
>gi|304274344|gb|ADM18919.1| putative DNA-directed RNA polymerase III [Sporidiobolus
salmonicolor]
gi|304274346|gb|ADM18920.1| putative DNA-directed RNA polymerase III [Sporidiobolus
salmonicolor]
gi|304274358|gb|ADM18926.1| putative DNA-directed RNA polymerase III [Sporidiobolus
salmonicolor]
Length = 171
Score = 122 bits (307), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 61/114 (53%), Positives = 80/114 (70%), Gaps = 1/114 (0%)
Query: 62 GVDNSLQLDHFCNNFRVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLI 121
G N L FCN+ +V V L+ +EFDL+G+DA++ANA RRI+IAE+PT+AIE V +
Sbjct: 4 GESNHWDLASFCNHLKVAVNSLSSAAIEFDLVGVDASVANAIRRIVIAEVPTVAIETVYV 63
Query: 122 ANNTSVIQDEVLAHRLGLIPIIVDPRLFEYMSENDTS-NEKNTIVFKLHVLCER 174
NNTS+IQDEVLA RLGLIP+ +DPR E + D + + NT+VF L CER
Sbjct: 64 WNNTSIIQDEVLAQRLGLIPLAIDPRKLEIKKDADEAPTDLNTVVFGLVARCER 117
>gi|115477954|ref|NP_001062572.1| Os09g0110400 [Oryza sativa Japonica Group]
gi|46806365|dbj|BAD17541.1| putative DNA-directed RNA polymerase II [Oryza sativa Japonica
Group]
gi|113630805|dbj|BAF24486.1| Os09g0110400 [Oryza sativa Japonica Group]
gi|215692481|dbj|BAG87901.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215697124|dbj|BAG91118.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215768432|dbj|BAH00661.1| unnamed protein product [Oryza sativa Japonica Group]
gi|218201657|gb|EEC84084.1| hypothetical protein OsI_30378 [Oryza sativa Indica Group]
gi|222641056|gb|EEE69188.1| hypothetical protein OsJ_28369 [Oryza sativa Japonica Group]
Length = 330
Score = 122 bits (307), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 85/238 (35%), Positives = 118/238 (49%), Gaps = 23/238 (9%)
Query: 77 RVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHR 136
RV + L D +F+L DA++ANA RR++IAE+PT+AI+ V I N+SV+ DE +AHR
Sbjct: 15 RVRIRELKDDYAKFELRDTDASMANALRRVMIAEVPTVAIDLVEIEVNSSVLNDEFIAHR 74
Query: 137 LGLIPIIVDPRLFEYMS------ENDTSNEKNTIVFKLHVLCERGGPRLTVKTNELKWLP 190
LGLIP+ + S + D S E ++ F L L V +N+L+
Sbjct: 75 LGLIPLTSAAAMAMRFSRDCDACDGDGSCEYCSVEFHLAARATDSDQTLEVTSNDLR--- 131
Query: 191 NGSELPLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPMLDITIARLGPGQEIELE 250
T P P + R Y + F I I +L GQE+ L
Sbjct: 132 -------STDPKVCPVDQARAYQHALGGTE---PFDTAAAADQRGILIVKLRRGQELRLR 181
Query: 251 AHAVKGIGKTHAKWSPVATAWYRMLPEIV----LLEDVEDEDAEKLVKTCPVNVFDIE 304
A A KGIGK HAKWSP AT + PEI L+E + E+ LV++ P VF+I+
Sbjct: 182 AIARKGIGKDHAKWSPAATVTFMYEPEIRINEELMETLTLEEKRNLVESSPTKVFNID 239
>gi|119719198|ref|YP_919693.1| RNA polymerase, insert [Thermofilum pendens Hrk 5]
gi|119524318|gb|ABL77690.1| DNA-directed RNA polymerase, subunit D [Thermofilum pendens Hrk 5]
Length = 283
Score = 122 bits (307), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 82/246 (33%), Positives = 125/246 (50%), Gaps = 38/246 (15%)
Query: 85 KDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRLGLIPIIV 144
++ + F L A ANA RR LI+E+P +AI++V++ NTS + DE++AHRL L+P+ +
Sbjct: 6 QNRLVFMLRNTTPAFANALRRALISEVPILAIDEVIVTENTSALWDEMIAHRLALVPLKI 65
Query: 145 DPRLFEYMSENDTSNEKNTIVFKLHVLCERGGPR-LTVKTNELKWLP-NGSELPLETKPD 202
DP ++ + + + ++F L E G R TV + L++ G+ LP E+
Sbjct: 66 DPETYDALRDLYEQGKDPQVIFSLE---EEAGERPRTVLSGHLRFEGIEGAPLPPESA-G 121
Query: 203 SNPSSKPRTYTSFSSSQDLLPEFSNNPIRPMLDITIARLGPGQEIELEAHAVKGIGKTHA 262
P SK +I I +LG GQ+I L A A G G+ HA
Sbjct: 122 IEPVSK--------------------------NIPILKLGKGQKISLTAIARMGTGRQHA 155
Query: 263 KWSPVATAWYRMLPEI-VLLEDVEDEDAEKLVKTCPVNVFDIEDIGSGKKRATVAQPRAC 321
KW PV Y+ P + +L ED+ +++A K++ TCP VF D + TV C
Sbjct: 156 KWQPVGPVGYKYKPVVRILREDLPEDEALKIISTCPRRVFGYVD-----GKLTVINEMQC 210
Query: 322 TLCREC 327
+LCREC
Sbjct: 211 SLCREC 216
>gi|403338254|gb|EJY68358.1| RNA polymerase II core subunit [Oxytricha trifallax]
Length = 329
Score = 122 bits (306), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 85/281 (30%), Positives = 137/281 (48%), Gaps = 40/281 (14%)
Query: 78 VEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRL 137
++++ L+K ++F+L+ D ++AN+ RRI+IAE+PTMAI+ V + NTS + DE +AHRL
Sbjct: 38 IKILELSKYVIKFELLNTDLSVANSLRRIIIAEVPTMAIDLVEVVENTSALHDEFIAHRL 97
Query: 138 GLIPI-IVDPRLFEYMSENDTSNE--KNTIVFKLHVLCERGGPRLTVKTNELKWLPNGSE 194
GLIP+ D F++ + S++ ++ FKLH +C ++ V T + L S
Sbjct: 98 GLIPMQSFDVDKFQFSDKCACSSKCVNCSVQFKLHAVCS-DRDQMEVNTRHINPLSESSI 156
Query: 195 LPLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPMLDITIARLGPGQEIELEAHAV 254
+P+ P I I +L Q++++ A
Sbjct: 157 MPVHYVDSQGKEEDP--------------------------ILIMKLSKNQQLDMNLIAR 190
Query: 255 KGIGKTHAKWSPVATAWYRMLPEIVLLEDV--EDEDAEK---LVKTCPVNVFDIEDIGSG 309
KG GK HAKWS VAT R P + + +D D D +K V TCP NV+ ++
Sbjct: 191 KGTGKLHAKWSSVATCQMRKEPIVEIDQDKINRDLDVQKRKEFVATCPRNVYKFNEM--- 247
Query: 310 KKRATVAQPRACTLCRECLRCGEE--WEKRVSIRRVKDHFI 348
+ + C LC EC+R + ++ V I ++ FI
Sbjct: 248 RNAVEIEDADKCILCIECVRFAQANGLDRAVKIAEREEKFI 288
>gi|406694412|gb|EKC97739.1| hypothetical protein A1Q2_07938 [Trichosporon asahii var. asahii
CBS 8904]
Length = 278
Score = 120 bits (302), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 92/296 (31%), Positives = 128/296 (43%), Gaps = 86/296 (29%)
Query: 54 YSGAYASMGVDNSLQLDHFCNNFRVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPT 113
+ G Y G D+S LD F RLT +EFDL+G+DA+IAN+ RR++IAE
Sbjct: 27 FPGHYP--GEDHSWNLDKFKE-------RLTPSTVEFDLVGVDASIANSLRRVMIAEC-- 75
Query: 114 MAIEKVLIANNTSVIQDEVLAHRLGLIPIIVDPRLFEYMSENDTSNEKNTIVFKLHVLCE 173
R P DP+ Y S
Sbjct: 76 --------------------DRRRDAAPGETDPKKLYYDS-------------------- 95
Query: 174 RGGPRLTVKTNELKWLPNGSELPLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPM 233
V T +KW+P+G + SK + RP+
Sbjct: 96 ------NVYTGMMKWVPSGQQ-----------KSK----------------YKGKEPRPV 122
Query: 234 LD-ITIARLGPGQEIELEAHAVKGIGKTHAKWSPVATAWYRMLPEIVLLEDVEDEDAEKL 292
LD I + +L PGQ ++L A KG+G HAK+SPVATA YR+LP I+L E + ED EK
Sbjct: 123 LDDILLVKLRPGQMVDLHCFARKGVGADHAKYSPVATASYRLLPHIILREPIPLEDQEKF 182
Query: 293 VKTCPVNVFDIEDIGSGKKRATVAQPRACTLCRECLRCGEEWEKRVSIRRVKDHFI 348
V ++E G ++ V PR T RE LR +E++ +V + R++DHFI
Sbjct: 183 KSCFAPGVIELEKDADGNQQVVVKNPRKDTASREVLRH-KEFQDKVELARIRDHFI 237
>gi|357154558|ref|XP_003576823.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB3-A-like
[Brachypodium distachyon]
Length = 330
Score = 120 bits (301), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 83/238 (34%), Positives = 120/238 (50%), Gaps = 23/238 (9%)
Query: 77 RVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHR 136
RV + L D +F+L DA++ANA RR++IAE+PT+AI+ V I +N+SV+ DE +AHR
Sbjct: 15 RVRIRELKDDYAKFELRDTDASMANALRRVMIAEVPTVAIDLVEIESNSSVLNDEFIAHR 74
Query: 137 LGLIPIIVDPRLFEYMS------ENDTSNEKNTIVFKLHVLCERGGPRLTVKTNELKWLP 190
LGLIP+ + S + D S E ++ F L L V +N+L+
Sbjct: 75 LGLIPLTSSGAMGMRFSRDCDACDGDGSCEHCSVEFHLAARATDANKTLEVTSNDLR--- 131
Query: 191 NGSELPLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPMLDITIARLGPGQEIELE 250
T P P + Y + D + + R +L I +L GQE+ L
Sbjct: 132 -------STDPKVCPVDQAMAYQQAIGTADPYDTSTASDHRGIL---IVKLRRGQELRLR 181
Query: 251 AHAVKGIGKTHAKWSPVATAWYRMLPEIV----LLEDVEDEDAEKLVKTCPVNVFDIE 304
A A KGI K HAKWSP AT + P+I L+E + E+ V++ P VFDI+
Sbjct: 182 AIARKGIAKDHAKWSPAATVTFMYEPDIRINEELMETLTLEEKTSWVESSPTKVFDID 239
>gi|294464103|gb|ADE77570.1| unknown [Picea sitchensis]
Length = 330
Score = 120 bits (301), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 99/299 (33%), Positives = 145/299 (48%), Gaps = 37/299 (12%)
Query: 63 VDNSLQLDHFCNNFRVEVIRLTKDD-MEFDLIGIDAAIANAFRRILIAELPTMAIEKVLI 121
+D Q+ F IR KDD M+F+L D +IANA RR++I E+PT+AI+ V I
Sbjct: 1 MDGQGQMSSSYQRFPTVKIREMKDDYMKFELKNTDPSIANALRRVMIGEVPTIAIDLVEI 60
Query: 122 ANNTSVIQDEVLAHRLGLIPIIVDPRLFEYMS------ENDTSNEKNTIVFKLHVLCERG 175
+N+SV+ DE LAHRLGLIP+I + + S + D ++ FKL+V C+ G
Sbjct: 61 ESNSSVLNDEFLAHRLGLIPLISERAMDMRFSRDCDTCDGDAQCHYCSVEFKLNVKCD-G 119
Query: 176 GPRLTVKTNELKWLPNGSELPLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPMLD 235
L V + +L S+ P ++ ++ F + R
Sbjct: 120 DQTLDVTSLDL--------------VSSDMRENPVVAVDRAADMNV---FDASEQRG--- 159
Query: 236 ITIARLGPGQEIELEAHAVKGIGKTHAKWSPVATAWYRMLPEI----VLLEDVEDEDAEK 291
I I +L GQE+ L A A KGIGK HAKWSP AT + P+I L+E + ++ +
Sbjct: 160 IIIVKLRRGQELRLRAIARKGIGKDHAKWSPAATVTFMYEPDIHINENLMETLTLDEKRE 219
Query: 292 LVKTCPVNVFDIEDIGSGKKRATVAQPRACTLCRECLRCGEEWEK--RVSIRRVKDHFI 348
+++CP VFDI ++ V A + E ++ E K VSI D FI
Sbjct: 220 WIESCPTKVFDIH---PDTQQVFVVDAEAYSYDDEVIKKAEAMGKPGLVSINAKDDSFI 275
>gi|123448560|ref|XP_001313008.1| RNA polymerase Rpb3/Rpb11 dimerisation domain containing protein
[Trichomonas vaginalis G3]
gi|121894876|gb|EAY00079.1| RNA polymerase Rpb3/Rpb11 dimerisation domain containing protein
[Trichomonas vaginalis G3]
Length = 322
Score = 119 bits (299), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 81/268 (30%), Positives = 126/268 (47%), Gaps = 29/268 (10%)
Query: 77 RVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHR 136
++ V T + +EF L+ + ANA RR++IAE+PT+A++ V NTS + DE +AHR
Sbjct: 14 QIFVTAKTSNSIEFRLMNVSRHFANALRRVMIAEVPTLAVDTVEFFQNTSPLPDEYIAHR 73
Query: 137 LGLIPIIV-DPRLFEYMSENDTSNEK------NTIVFKLHVLCE-RGGPRLTVKTNELKW 188
L LIP + D F Y S+ + + T+++ + CE + V +N+LK
Sbjct: 74 LALIPFVSEDADKFFYHSQCNCDGSQLGYCPNCTVIYTIDAHCEPESDSVVEVTSNDLKL 133
Query: 189 LPNGSELPLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPMLDITIARLGPGQEIE 248
+ T + KP T F+N P +TI +L PGQ +
Sbjct: 134 IAPHKWADKSTMGSIHIGVKPATL------------FANGDSNPQ-PVTITKLAPGQTLR 180
Query: 249 LEAHAVKGIGKTHAKWSPVATAWYRMLPEIVLLED----VEDEDAEKLVKTCPVNVFDIE 304
L A+ KGIG+ HAKWSPV + Y + I E ++ ++ E++V +CP +
Sbjct: 181 LAAYIRKGIGRNHAKWSPVCVSTYHQVASIDFREAYKQIMDQKEKEEVVASCPKKCLKM- 239
Query: 305 DIGSGKKRATVAQPRACTLCRECLRCGE 332
VA CT C +C+R E
Sbjct: 240 ---GLDDNIQVANFEDCTFCNQCIRTAE 264
>gi|297832026|ref|XP_002883895.1| RBP36A [Arabidopsis lyrata subsp. lyrata]
gi|297329735|gb|EFH60154.1| RBP36A [Arabidopsis lyrata subsp. lyrata]
Length = 319
Score = 119 bits (297), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 95/281 (33%), Positives = 141/281 (50%), Gaps = 40/281 (14%)
Query: 81 IRLTKDDM-EFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRLGL 139
IR KDD +F+L D ++ANA RR++I+E+PT+AI+ V I N+SV+ DE +AHRLGL
Sbjct: 14 IRELKDDYAKFELRETDVSMANALRRVMISEVPTVAIDLVEIEVNSSVLNDEFIAHRLGL 73
Query: 140 IPIIVDPRLFEYMS------ENDTSNEKNTIVFKLHVLCERGGPRLTVKTNELKWLPNGS 193
IP+ + + S + D E ++ F+L C L V + +L
Sbjct: 74 IPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFRLSAKC-VTDQTLDVTSRDLY------ 126
Query: 194 ELPLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPMLDITIARLGPGQEIELEAHA 253
++P+ P +T SS+ D + I I +L GQE++L A A
Sbjct: 127 --------SADPTVTPVDFTIDSSASDSSEQKG---------IIIVKLRRGQELKLRAIA 169
Query: 254 VKGIGKTHAKWSPVATAWYRMLPEIVLLEDVED--EDAEK--LVKTCPVNVFDIEDIGSG 309
KGIGK HAKWSP AT + P+I++ ED+ D D EK L+++ P VF I+ +
Sbjct: 170 RKGIGKDHAKWSPAATVTFMYEPDIIINEDMMDTLSDEEKIDLIESSPTKVFGIDPV--- 226
Query: 310 KKRATVAQPRACTLCRECLRCGEEWEK--RVSIRRVKDHFI 348
++ V P A T E ++ E K + I D FI
Sbjct: 227 TRQVVVVDPEAYTYDEEVIKKAEAMGKPGLIEIHPKDDSFI 267
>gi|304274348|gb|ADM18921.1| putative DNA-directed RNA polymerase III [Sporidiobolus
salmonicolor]
gi|304274350|gb|ADM18922.1| putative DNA-directed RNA polymerase III [Sporidiobolus
salmonicolor]
Length = 171
Score = 119 bits (297), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 60/114 (52%), Positives = 79/114 (69%), Gaps = 1/114 (0%)
Query: 62 GVDNSLQLDHFCNNFRVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLI 121
G N L F N+ +V V L+ +EFDL+G+DA++ANA RRI+IAE+PT+AIE V +
Sbjct: 4 GESNHWDLASFRNHLKVAVNSLSSGAIEFDLVGVDASVANAIRRIVIAEVPTVAIETVYV 63
Query: 122 ANNTSVIQDEVLAHRLGLIPIIVDPRLFEYMSENDTS-NEKNTIVFKLHVLCER 174
NNTS+IQDEVLA RLGLIP+ +DPR E + D + + NT+VF L CER
Sbjct: 64 WNNTSIIQDEVLAQRLGLIPLAIDPRKLEIKKDADEAPTDLNTVVFGLVARCER 117
>gi|304274362|gb|ADM18928.1| putative DNA-directed RNA polymerase III [Sporidiobolus
salmonicolor]
Length = 171
Score = 118 bits (296), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 60/114 (52%), Positives = 79/114 (69%), Gaps = 1/114 (0%)
Query: 62 GVDNSLQLDHFCNNFRVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLI 121
G N L F N+ +V V L+ +EFDL+G+DA++ANA RRI+IAE+PT+AIE V +
Sbjct: 4 GESNHWDLASFRNHLKVAVNSLSSAAIEFDLVGVDASVANAIRRIVIAEVPTVAIETVYV 63
Query: 122 ANNTSVIQDEVLAHRLGLIPIIVDPRLFEYMSENDTS-NEKNTIVFKLHVLCER 174
NNTS+IQDEVLA RLGLIP+ +DPR E + D + + NT+VF L CER
Sbjct: 64 WNNTSIIQDEVLAQRLGLIPLAIDPRKLEIKKDADEAPTDLNTVVFGLVARCER 117
>gi|356521566|ref|XP_003529425.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB3-A-like
[Glycine max]
Length = 319
Score = 118 bits (296), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 97/284 (34%), Positives = 142/284 (50%), Gaps = 40/284 (14%)
Query: 77 RVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHR 136
RV++ L D +F+L DA+IANA RR++IAE+PT+AI+ V I N+SV+ DE +AHR
Sbjct: 12 RVKIRELKDDYAKFELRDTDASIANALRRVMIAEVPTVAIDLVEIEVNSSVLNDEFIAHR 71
Query: 137 LGLIPIIVDPRLFEYMS------ENDTSNEKNTIVFKLHVLCERGGPRLTVKTNELKWLP 190
LGLIP+ + + S + D E ++ F L V C L V + +L
Sbjct: 72 LGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRVKC-MTDQTLDVTSKDLY--- 127
Query: 191 NGSELPLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPMLDITIARLGPGQEIELE 250
S+P+ P ++ S++ + NN I I +L GQE++L
Sbjct: 128 -----------SSDPTVSPVDFSDPSAT-----DSDNNR-----GIIIVKLRRGQELKLR 166
Query: 251 AHAVKGIGKTHAKWSPVATAWYRMLPEIVLLEDVED----EDAEKLVKTCPVNVFDIEDI 306
A A KGIGK HAKWSP AT + PEI + ED+ + E+ + V + P VF+I+ +
Sbjct: 167 AIARKGIGKDHAKWSPAATVTFMYEPEIHINEDLMETLTLEEKREWVDSSPTRVFEIDPV 226
Query: 307 GSGKKRATVAQPRACTLCRECLRCGEEWEK--RVSIRRVKDHFI 348
++ V A T E L+ E K V I +D FI
Sbjct: 227 ---TQQVMVVDAEAYTYDDEVLKKAEAMGKPGLVEIIARQDSFI 267
>gi|219121575|ref|XP_002181139.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
gi|217407125|gb|EEC47062.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
Length = 320
Score = 118 bits (296), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 91/288 (31%), Positives = 143/288 (49%), Gaps = 30/288 (10%)
Query: 77 RVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHR 136
RVE++ + +++F L D ++AN RRI+IAE+PT+AI+ V N++V+ DE +AHR
Sbjct: 8 RVEILSIQPQEIKFILSESDTSVANTLRRIMIAEVPTLAIDLVEFHENSTVLNDEYIAHR 67
Query: 137 LGLIPIIVDPRLFEYMSENDTSNEKNTIVFKLH--VLCERGGPRLTVKTN-ELKWLPNGS 193
+GLIP+ P E + +D S+ F H +C R +V+ ++ + G
Sbjct: 68 MGLIPVRYQPA--ESLKGSDCSD-----AFLPHRECVCYEHCMRCSVEFELDITYKVTGE 120
Query: 194 E---LPLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPMLDITIARLGPGQEIELE 250
E PL S+ + SQD E + + I +LGPGQ ++L+
Sbjct: 121 EDVLAPLTVTSKDLVSNNELVQPAHFLSQDEQDEAQDE------GVAIVKLGPGQRLKLK 174
Query: 251 AHAVKGIGKTHAKWSPVATAWYRMLPEIVL----LEDVEDEDAEKLVKTCPVNVFDIEDI 306
A A GI K HAKW PVA A YR PEI + + + E ++LV TCP + +++++
Sbjct: 175 AIARMGISKEHAKWCPVAVATYRFWPEIHINDEQMATLTLEQKQELVDTCPDRILELDEV 234
Query: 307 GSGKKRATVAQPRACTLCRECLRCGEEWEKR------VSIRRVKDHFI 348
+G RA CT + +KR V++ + KD FI
Sbjct: 235 -TGDIRAVDNAWDICTYTEDLKFAQAAMKKRPEDDDFVTVTQSKDRFI 281
>gi|304274360|gb|ADM18927.1| putative DNA-directed RNA polymerase III [Sporidiobolus
salmonicolor]
Length = 171
Score = 118 bits (296), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 60/114 (52%), Positives = 79/114 (69%), Gaps = 1/114 (0%)
Query: 62 GVDNSLQLDHFCNNFRVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLI 121
G N L F N+ +V V L+ +EFDL+G+DA++ANA RRI+IAE+PT+AIE V +
Sbjct: 4 GESNHWDLASFRNHLKVAVNSLSSAAIEFDLVGVDASVANAIRRIVIAEVPTVAIETVYV 63
Query: 122 ANNTSVIQDEVLAHRLGLIPIIVDPRLFEYMSENDTS-NEKNTIVFKLHVLCER 174
NNTS+IQDEVLA RLGLIP+ +DPR E + D + + NT+VF L CER
Sbjct: 64 WNNTSIIQDEVLAQRLGLIPLAIDPRKLEIKQDADEAPTDLNTVVFGLVARCER 117
>gi|304274352|gb|ADM18923.1| putative DNA-directed RNA polymerase III [Sporidiobolus
salmonicolor]
gi|304274354|gb|ADM18924.1| putative DNA-directed RNA polymerase III [Sporidiobolus
salmonicolor]
gi|304274356|gb|ADM18925.1| putative DNA-directed RNA polymerase III [Sporidiobolus
salmonicolor]
Length = 171
Score = 118 bits (296), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 60/114 (52%), Positives = 79/114 (69%), Gaps = 1/114 (0%)
Query: 62 GVDNSLQLDHFCNNFRVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLI 121
G N L F N+ +V V L+ +EFDL+G+DA++ANA RRI+IAE+PT+AIE V +
Sbjct: 4 GESNHWDLASFRNHLKVAVNSLSSAAIEFDLVGVDASVANAIRRIVIAEVPTVAIETVYV 63
Query: 122 ANNTSVIQDEVLAHRLGLIPIIVDPRLFEYMSENDTS-NEKNTIVFKLHVLCER 174
NNTS+IQDEVLA RLGLIP+ +DPR E + D + + NT+VF L CER
Sbjct: 64 WNNTSIIQDEVLAQRLGLIPLAIDPRKLEIKKDADEAPTDLNTVVFGLVARCER 117
>gi|302833623|ref|XP_002948375.1| hypothetical protein VOLCADRAFT_88650 [Volvox carteri f.
nagariensis]
gi|300266595|gb|EFJ50782.1| hypothetical protein VOLCADRAFT_88650 [Volvox carteri f.
nagariensis]
Length = 272
Score = 118 bits (295), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 94/277 (33%), Positives = 136/277 (49%), Gaps = 53/277 (19%)
Query: 88 MEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRLGLIPIIVD-- 145
M F+L D + ANA RR++IAE+PT+AI+ V + NNT+V+ DE LAHRLGL+P++
Sbjct: 1 MVFELKNTDVSSANALRRVMIAEVPTIAIDLVEMENNTTVLNDEFLAHRLGLLPLVSTEA 60
Query: 146 ---PRLFEYMSENDTSNEKNTI--VFKLHVLCERGGPRLTVKTNELKWL-PNGSELPLET 199
R FE+ SN+ + I F L V C G + V +N+L L P P+
Sbjct: 61 VAWKRPFEW------SNDADMIETAFSLDVTCTVDGV-MDVTSNDLVPLNPEHGVFPVNY 113
Query: 200 KPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPMLDITIARLGPGQEIELEAHAVKGIGK 259
+ NP KP I I ++ GQ+++L A A KGIGK
Sbjct: 114 Q---NPDEKP--------------------------IVICKMRRGQQLKLVARARKGIGK 144
Query: 260 THAKWSPVATAWYRMLPEIVL----LEDVEDEDAEKLVKTCPVNVFDIEDIGSGKKRATV 315
HAK+ PVATA ++ P IVL + ++ DE+ + V + P F I + V
Sbjct: 145 DHAKFIPVATAVFQYKPRIVLSHSAMAEMTDEEKQIFVHSDPSKTFKFNPI---TRMIEV 201
Query: 316 AQPRACTLCRECLRCGEEWEK--RVSIRRVKDHFICK 350
A ECL E + V+I +++DHFI +
Sbjct: 202 ENEEAYMYDEECLVKARELGRPDLVTITQLQDHFIFR 238
>gi|356576253|ref|XP_003556247.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB3-A-like
[Glycine max]
Length = 320
Score = 118 bits (295), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 98/284 (34%), Positives = 143/284 (50%), Gaps = 39/284 (13%)
Query: 77 RVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHR 136
RV++ L D +F+L DA+IANA RR++IAE+PT+AI+ V I N+SV+ DE +AHR
Sbjct: 12 RVKIRELKDDYAKFELRDTDASIANALRRVMIAEVPTVAIDLVEIEVNSSVLNDEFIAHR 71
Query: 137 LGLIPIIVDPRLFEYMS------ENDTSNEKNTIVFKLHVLCERGGPRLTVKTNELKWLP 190
LGLIP+ + + S + D E ++ F L V C L V + +L
Sbjct: 72 LGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRVKC-MTDQTLDVTSKDLY--- 127
Query: 191 NGSELPLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPMLDITIARLGPGQEIELE 250
S+P+ P ++ S++ P+ NN I I +L GQE++L
Sbjct: 128 -----------SSDPTVSPVDFSDPSATDS--PD--NNR-----GIIIVKLRRGQELKLR 167
Query: 251 AHAVKGIGKTHAKWSPVATAWYRMLPEIVLLEDVED----EDAEKLVKTCPVNVFDIEDI 306
A A KGIGK HAKWSP AT + PEI + ED+ + E+ + V + P VF+I+ +
Sbjct: 168 AIARKGIGKDHAKWSPAATVTFMYEPEIHINEDLMETLTLEEKREWVDSSPTRVFEIDPV 227
Query: 307 GSGKKRATVAQPRACTLCRECLRCGEEWEK--RVSIRRVKDHFI 348
++ V A T E L+ E K V I +D FI
Sbjct: 228 ---TQQVMVVDAEAYTYDDEVLKKAEAMGKPGLVEIIARQDSFI 268
>gi|429328829|gb|AFZ80589.1| DNA-directed RNA polymerase II, putative [Babesia equi]
Length = 355
Score = 117 bits (294), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 88/291 (30%), Positives = 137/291 (47%), Gaps = 49/291 (16%)
Query: 78 VEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRL 137
+E++ L +D M+F L+ D + ANA RRI+++E+P +AIE V + NTSV+ DE ++HRL
Sbjct: 12 IEIVELRQDRMDFVLLNSDVSTANAIRRIILSEIPALAIEIVTVLENTSVLHDEYISHRL 71
Query: 138 GLIPIIVDPRL---FEYMSENDTSNE--KNTIVFKLHVLCERGGPRLTVKTNELKWLPNG 192
GL+PI D L FE+ + S++ K T+ + L V C+ ++ + +
Sbjct: 72 GLLPI--DSTLASEFEFREKCQCSDKCAKCTVDYTLDVSCDDADSKVVTHFDII-----A 124
Query: 193 SELPLETKPDSN-PSSKPRT-YTSFSSSQDLLPEFSNNPIRPMLDITIARLGPGQEIELE 250
E + + + P PR ++F+ + D +P I +L GQ I ++
Sbjct: 125 DEAEINSNDERKIPMPIPRADISNFNGATDGIP--------------IVKLKRGQSISMK 170
Query: 251 AHAVKGIGKTHAKWSPVATAWYRMLPEIV----LLEDVEDEDAEKLVKTCPVNVF----- 301
A KG+GK HAKW VA Y+M P + L+E + ED + +CP NVF
Sbjct: 171 LTATKGLGKFHAKW-IVANVNYKMEPRFLFNSSLMEQISSEDKASIASSCPRNVFKFSGS 229
Query: 302 --DIEDIGSGKKRATVAQPRA---------CTLCRECLRCGEEWEKRVSIR 341
D I G + + C C EC+ E R IR
Sbjct: 230 RMDHTGISLGNSNSAIKLDEGGLQIINKLNCIYCDECINHARELGHRDLIR 280
>gi|304274364|gb|ADM18929.1| putative DNA-directed RNA polymerase III [Sporidiobolus johnsonii]
Length = 171
Score = 117 bits (293), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 59/114 (51%), Positives = 79/114 (69%), Gaps = 1/114 (0%)
Query: 62 GVDNSLQLDHFCNNFRVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLI 121
G N +D F ++ V V +L+ +EFDL+G+DA++ANA RRI+IAE+PT+AIE V +
Sbjct: 4 GESNHWDIDSFRSHLNVAVNKLSAAAIEFDLVGVDASVANAIRRIVIAEVPTVAIETVYV 63
Query: 122 ANNTSVIQDEVLAHRLGLIPIIVDPRLFEYMSENDTS-NEKNTIVFKLHVLCER 174
NNTS+IQDEVLA RLGLIP+ +DPR E D + + NT+VF L CER
Sbjct: 64 WNNTSIIQDEVLAQRLGLIPLAIDPRKLELKKAADEAPTDLNTVVFGLVARCER 117
>gi|255555327|ref|XP_002518700.1| DNA-directed RNA polymerase II subunit, putative [Ricinus communis]
gi|223542081|gb|EEF43625.1| DNA-directed RNA polymerase II subunit, putative [Ricinus communis]
Length = 318
Score = 117 bits (293), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 93/284 (32%), Positives = 138/284 (48%), Gaps = 40/284 (14%)
Query: 77 RVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHR 136
R+++ L D +F+L DA++ANA RR++IAE+PT+AI+ V I N+SV+ DE +AHR
Sbjct: 11 RIKIRELKDDYCKFELRDTDASMANALRRVMIAEVPTVAIDLVEIEVNSSVLNDEFIAHR 70
Query: 137 LGLIPIIVDPRLFEYMS------ENDTSNEKNTIVFKLHVLCERGGPRLTVKTNELKWLP 190
LGLIP+ + + S + D + ++ F L C +T +T ++
Sbjct: 71 LGLIPLTSERAMSMRFSRDCDACDGDGQCDYCSVEFHLRAKC------ITDQTLDV---- 120
Query: 191 NGSELPLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPMLDITIARLGPGQEIELE 250
T D S FS S S I I +L GQE+ L
Sbjct: 121 --------TSKDLYSSDHTVVPVDFSDS-------SGYDSSEQRGIIIVKLRRGQELRLR 165
Query: 251 AHAVKGIGKTHAKWSPVATAWYRMLPEIVLLEDVED----EDAEKLVKTCPVNVFDIEDI 306
A A KGIGK HAKWSP AT + P+I + ED+ + E+ + V++ P VFDI+
Sbjct: 166 AIARKGIGKDHAKWSPAATVTFMYEPDIHINEDLMESLSLEEKQSWVESSPTKVFDID-- 223
Query: 307 GSGKKRATVAQPRACTLCRECLRCGEEWEK--RVSIRRVKDHFI 348
++ V P A T E ++ E K V+I+ +D FI
Sbjct: 224 -PNTQQVVVVDPEAYTYDEEVIKKAESMGKPGLVNIQAKEDSFI 266
>gi|340505295|gb|EGR31641.1| hypothetical protein IMG5_105540 [Ichthyophthirius multifiliis]
Length = 307
Score = 117 bits (293), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 84/282 (29%), Positives = 141/282 (50%), Gaps = 27/282 (9%)
Query: 77 RVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHR 136
++ + L + ++F L + A+AN+ RRIL+AE+ T+AI+ V + NTS + DE +AHR
Sbjct: 5 KITITDLQEQKVDFILENCEVALANSLRRILLAEVETIAIQNVKVYENTSCLPDEYIAHR 64
Query: 137 LGLIPII---VDPRLFEYMSENDTSNEKNTIVFKLHVLCERGGPRLTVKT-NELKWLPNG 192
+GLIP+I VD + + + S+E C+R +K N+
Sbjct: 65 VGLIPLISANVDNFNYIWNCDCKGSSEGQE--------CDRCAVHFVLKVQNQGNTTMEV 116
Query: 193 SELPLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPMLDITIARLGPGQEIELEAH 252
+ L L+ K ++ R +S D + + + I I +L Q+I E
Sbjct: 117 TSLDLKEKFMNSDEDAVRPVKFYSIVPDQMGR------QQEVGIPIVKLSKNQQIHFECE 170
Query: 253 AVKGIGKTHAKWSPVATAWYRMLPEIVLLEDVED---EDAEKLVKTCPVNVFDIEDIGSG 309
A+KGIGK H+KWS V+ A +++ P I +D++ E +++V CPV V+ +I
Sbjct: 171 AMKGIGKMHSKWSAVSVASFKIEPLIKFSDDIQQLTREQKKQIVDCCPVKVY---EINQE 227
Query: 310 KKRATVAQPRACTLCRECL-RCGEEWE--KRVSIRRVKDHFI 348
+ +A + C C EC+ +C EE + K + I K+ FI
Sbjct: 228 NDQLEIANLQKCMFCDECVFKCEEEIKKPKLIKIDHNKNKFI 269
>gi|147838054|emb|CAN60923.1| hypothetical protein VITISV_019338 [Vitis vinifera]
Length = 318
Score = 117 bits (292), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 98/285 (34%), Positives = 138/285 (48%), Gaps = 49/285 (17%)
Query: 81 IRLTKDDM-EFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRLGL 139
IR KDD +F+L DA++ANA RR++IAE+PT+AI+ V I N+SV+ DE +AHRLGL
Sbjct: 14 IREVKDDYAKFELRETDASMANALRRVMIAEVPTVAIDLVEIEVNSSVLNDEFIAHRLGL 73
Query: 140 IPIIVDPRLFEYMS------ENDTSNEKNTIVFKLHVLCERGGPRLTVKTNELKWLPNGS 193
IP+ + + S + D E ++ F L C L V + +L
Sbjct: 74 IPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKC-MTDETLDVTSKDL------- 125
Query: 194 ELPLETKPDSNPSSKPRTYTSFSSSQDLLP-EFSNNPIRPMLD---ITIARLGPGQEIEL 249
SS ++P +FS++ D I I +L GQE+ L
Sbjct: 126 ---------------------ISSDHTVVPVDFSDSSGYDSADKKGIIIVKLRRGQELRL 164
Query: 250 EAHAVKGIGKTHAKWSPVATAWYRMLPEIVLLEDVED----EDAEKLVKTCPVNVFDIED 305
A A KGIGK HAKWSP AT + PEI + ED+ + E+ V++ P VFDI+
Sbjct: 165 RAIARKGIGKDHAKWSPAATVTFMYEPEIHINEDLMESLTLEEKTSWVESSPTKVFDID- 223
Query: 306 IGSGKKRATVAQPRACTLCRECLRCGEEWEK--RVSIRRVKDHFI 348
+ ++ VA A T E L+ E K V I +D FI
Sbjct: 224 --ASSQQVVVADAEAYTYDDEVLKKAEAMGKPGLVEIYAKEDSFI 266
>gi|71749338|ref|XP_828008.1| DNA-directed RNA polymerase subunit alpha [Trypanosoma brucei
TREU927]
gi|70833392|gb|EAN78896.1| DNA-directed RNA polymerase, alpha subunit, putative [Trypanosoma
brucei brucei strain 927/4 GUTat10.1]
Length = 337
Score = 117 bits (292), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 62/192 (32%), Positives = 104/192 (54%), Gaps = 28/192 (14%)
Query: 88 MEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRLGLIPIIVDPR 147
+ FD+ + +AN FRR+++ E+P A +++LI +N V+ DE+LAHR+GL+P+
Sbjct: 51 ITFDMDNVSPPVANMFRRLMLTEVPVFAFDRILIEHNDGVVPDELLAHRIGLVPLAGPVS 110
Query: 148 LFEYMSEN-----DTSNEKNTIVFKLHVLCERGGPRLTVKTNELKWLPNGSELPLETKPD 202
+Y++++ D + + ++F+L V +R P +V + LKW P + L + +
Sbjct: 111 SMQYITDSASVGFDNLDPERVLLFELDVTAKRDVPTTSVYSGHLKWQPIAKQEELAARSE 170
Query: 203 SNPSSKPRTYTSFSSSQDLLPEFSNNPIRPMLDITIARLGPGQEIELEAHAVKGIGKTHA 262
+ R + + P DI + RLGPGQ ++L A A+KGIG HA
Sbjct: 171 DD-----RVFL----------------VHP--DIVLTRLGPGQRLKLRAIAIKGIGAVHA 207
Query: 263 KWSPVATAWYRM 274
KW+PVA +Y M
Sbjct: 208 KWTPVAACFYEM 219
>gi|304274366|gb|ADM18930.1| putative DNA-directed RNA polymerase III [Sporidiobolus johnsonii]
Length = 171
Score = 117 bits (292), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 58/114 (50%), Positives = 79/114 (69%), Gaps = 1/114 (0%)
Query: 62 GVDNSLQLDHFCNNFRVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLI 121
G N +D F ++ V V +L+ +EFDL+G+DA++ANA RR++IAE+PT+AIE V +
Sbjct: 4 GESNHWDIDSFRSHLNVAVNKLSAAAIEFDLVGVDASVANAIRRVVIAEVPTVAIETVYV 63
Query: 122 ANNTSVIQDEVLAHRLGLIPIIVDPRLFEYMSENDTS-NEKNTIVFKLHVLCER 174
NNTS+IQDEVLA RLGLIP+ +DPR E D + + NT+VF L CER
Sbjct: 64 WNNTSIIQDEVLAQRLGLIPLAIDPRKLELKKAADEAPTDLNTVVFGLVARCER 117
>gi|261333779|emb|CBH16774.1| DNA-directed RNA polymerase, alpha subunit,putative [Trypanosoma
brucei gambiense DAL972]
Length = 337
Score = 117 bits (292), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 62/192 (32%), Positives = 104/192 (54%), Gaps = 28/192 (14%)
Query: 88 MEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRLGLIPIIVDPR 147
+ FD+ + +AN FRR+++ E+P A +++LI +N V+ DE+LAHR+GL+P+
Sbjct: 51 ITFDMDNVSPPVANMFRRLMLTEVPVFAFDRILIEHNDGVVPDELLAHRIGLVPLAGPVS 110
Query: 148 LFEYMSEN-----DTSNEKNTIVFKLHVLCERGGPRLTVKTNELKWLPNGSELPLETKPD 202
+Y++++ D + + ++F+L V +R P +V + LKW P + L + +
Sbjct: 111 SMQYITDSASVGFDNLDPERVLLFELDVTAKRDVPTTSVYSGHLKWQPIAKQEELAARSE 170
Query: 203 SNPSSKPRTYTSFSSSQDLLPEFSNNPIRPMLDITIARLGPGQEIELEAHAVKGIGKTHA 262
+ R + + P DI + RLGPGQ ++L A A+KGIG HA
Sbjct: 171 DD-----RVFL----------------VHP--DIVLTRLGPGQRLKLRAIAIKGIGAVHA 207
Query: 263 KWSPVATAWYRM 274
KW+PVA +Y M
Sbjct: 208 KWTPVAACFYEM 219
>gi|225428887|ref|XP_002285322.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB3-A [Vitis
vinifera]
Length = 318
Score = 117 bits (292), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 98/285 (34%), Positives = 138/285 (48%), Gaps = 49/285 (17%)
Query: 81 IRLTKDDM-EFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRLGL 139
IR KDD +F+L DA++ANA RR++IAE+PT+AI+ V I N+SV+ DE +AHRLGL
Sbjct: 14 IREVKDDYAKFELRETDASMANALRRVMIAEVPTVAIDLVEIEVNSSVLNDEFIAHRLGL 73
Query: 140 IPIIVDPRLFEYMS------ENDTSNEKNTIVFKLHVLCERGGPRLTVKTNELKWLPNGS 193
IP+ + + S + D E ++ F L C L V + +L
Sbjct: 74 IPLTSERAMAMRFSRDCDACDGDGQCEFCSVEFHLRAKC-MTDETLDVTSKDL------- 125
Query: 194 ELPLETKPDSNPSSKPRTYTSFSSSQDLLP-EFSNNPIRPMLD---ITIARLGPGQEIEL 249
SS ++P +FS++ D I I +L GQE+ L
Sbjct: 126 ---------------------ISSDHTVVPVDFSDSSGYDSADKKGIIIVKLRRGQELRL 164
Query: 250 EAHAVKGIGKTHAKWSPVATAWYRMLPEIVLLEDVED----EDAEKLVKTCPVNVFDIED 305
A A KGIGK HAKWSP AT + PEI + ED+ + E+ V++ P VFDI+
Sbjct: 165 RAIARKGIGKDHAKWSPAATVTFMYEPEIHINEDLMESLTLEEKTSWVESSPTKVFDID- 223
Query: 306 IGSGKKRATVAQPRACTLCRECLRCGEEWEK--RVSIRRVKDHFI 348
+ ++ VA A T E L+ E K V I +D FI
Sbjct: 224 --ASSQQVVVADAEAYTYDDEVLKKAEAMGKPGLVEIYAKEDSFI 266
>gi|357475219|ref|XP_003607895.1| DNA-directed RNA polymerase II subunit RPB3-A [Medicago truncatula]
gi|85719360|gb|ABC75365.1| RNA polymerase, dimerisation [Medicago truncatula]
gi|355508950|gb|AES90092.1| DNA-directed RNA polymerase II subunit RPB3-A [Medicago truncatula]
Length = 318
Score = 116 bits (291), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 93/284 (32%), Positives = 139/284 (48%), Gaps = 40/284 (14%)
Query: 77 RVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHR 136
RV++ L D M+F+L DA++ANA RR++I+E+PT+AI+ V I N+SV+ DE +AHR
Sbjct: 11 RVKIRELKDDYMKFELRDTDASVANALRRVMISEVPTVAIDLVEIEVNSSVLNDEFIAHR 70
Query: 137 LGLIPIIVDPRLFEYMS------ENDTSNEKNTIVFKLHVLCERGGPRLTVKTNELKWLP 190
LGLIP+ + + S + D E ++ F L V C +T +T L
Sbjct: 71 LGLIPLTSERAMAMRFSRDCDACDGDGQCEYCSVEFHLRVKC------ITDQT-----LD 119
Query: 191 NGSELPLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPMLDITIARLGPGQEIELE 250
S+ + + P P S S I I +L GQE+ L
Sbjct: 120 VSSKDLISSDHTVTPVDVPGGDASIESDG--------------RGIIIVKLRRGQELRLR 165
Query: 251 AHAVKGIGKTHAKWSPVATAWYRMLPEIVLLEDVED----EDAEKLVKTCPVNVFDIEDI 306
A A KGIGK HAKWSP AT + P+I + ED+ + E+ ++ V + P VFDI+ +
Sbjct: 166 AIARKGIGKDHAKWSPAATVTFMYEPDIHINEDLMESLTLEEKKEWVDSSPTRVFDIDPV 225
Query: 307 GSGKKRATVAQPRACTLCRECLRCGEEWEK--RVSIRRVKDHFI 348
++ V P A + E ++ E K + I +D FI
Sbjct: 226 ---TQQVMVVDPEAYSYDDEVIKKAEAMGKPGLIEITAKQDSFI 266
>gi|440296135|gb|ELP88976.1| DNA-directed RNA polymerase subunit D, putative [Entamoeba invadens
IP1]
Length = 280
Score = 116 bits (291), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 76/271 (28%), Positives = 127/271 (46%), Gaps = 48/271 (17%)
Query: 86 DDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRLGLIPIIVD 145
+ + F + D + N RR+++AE+PT+AI+ V + NTS + DE +AHRLGLIP+
Sbjct: 17 EKLSFRIYNTDTSFVNGLRRMIMAEVPTIAIQLVRVHLNTSYLCDEYIAHRLGLIPLD-S 75
Query: 146 PRLFEYMSENDTSNEKNTIVFKLHVLCERGGPRLTVKTNELKWLPNGSELPLETKPDSNP 205
+++++ + T +F + V+ E L V +N+L+++ P+ K D NP
Sbjct: 76 TKVYDFEDGDQT-------IFNIRVVNENERESLNVTSNDLQFVEGKKLFPVGYKSD-NP 127
Query: 206 SSKPRTYTSFSSSQDLLPEFSNNPIRPMLDITIARLGPGQEIELEAHAVKGIGKTHAKWS 265
I I +LGP Q + ++ A KG GK HAKW+
Sbjct: 128 ------------------------------IIITQLGPRQSLYVDCFATKGTGKFHAKWN 157
Query: 266 PVATAWYRMLPEIVL----LEDVEDEDAEKLVKTCPVNVFDIEDIGSGKKRATVAQPRAC 321
P ++ L +I + L ++ E + CP VF+ ++I R TV P +C
Sbjct: 158 PTCQCVFQTLADIQINETKLANLTGEQRRTFCEMCPQKVFEFQEING---RITVDHPESC 214
Query: 322 TLCRECLRCGEEWEKR--VSIRRVKDHFICK 350
C+EC ++ +R ++ D FI K
Sbjct: 215 IFCQECTVYSKDIGQRNFCTVTPKTDEFIFK 245
>gi|303281664|ref|XP_003060124.1| predicted protein [Micromonas pusilla CCMP1545]
gi|226458779|gb|EEH56076.1| predicted protein [Micromonas pusilla CCMP1545]
Length = 333
Score = 116 bits (290), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 88/283 (31%), Positives = 145/283 (51%), Gaps = 27/283 (9%)
Query: 80 VIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRLGL 139
V LT + + F L+ D ++ANA RR++IAE+PT+AI+ V + NTS + DE +AHRLGL
Sbjct: 16 VQELTHEKIRFALLHTDTSVANALRRVIIAEVPTLAIDLVDVIENTSCLCDEFIAHRLGL 75
Query: 140 IPIIVDPRL-----FEYMSENDTSNEKNTIVFKLHVLCERGGPRLTVKTNELK-WLPNGS 193
IP++ + + ++Y ++++ + + F+L+ + V +N+L + P +
Sbjct: 76 IPLLSEKAVEMEFPYDYAGDDESVTD---VHFELNTGICASAETVDVTSNDLVCYDPRVA 132
Query: 194 ELPLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPMLDITIARLGPGQEIELEAHA 253
P+ P + K + + P+ + P P + I +L GQ+I + A
Sbjct: 133 --PVNYHPGESIKGKGGAMEFEAQAAARGPD--DGPDIP--GVVIVKLRRGQQINMRCVA 186
Query: 254 VKGIGKTHAKWSPVATAWYRMLPEIV----LLEDVEDEDAEKLVKTCPVNVFDIEDIGSG 309
KG+G+ HAKW PVATA YR PEI L+ + +E+ V++ P +F ++
Sbjct: 187 RKGVGRDHAKWQPVATATYRFEPEITINEELMATLTEEEKMAFVESSPTALFRYDE---A 243
Query: 310 KKRATVAQP---RACTLCRECLRCGEEWEK--RVSIRRVKDHF 347
+R V P R+ ECL+ EE K V IR +D F
Sbjct: 244 TRRVVVDAPDQARSYGYDGECLKKAEELGKPGLVDIRAKEDAF 286
>gi|388505946|gb|AFK41039.1| unknown [Medicago truncatula]
Length = 318
Score = 115 bits (289), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 93/284 (32%), Positives = 139/284 (48%), Gaps = 40/284 (14%)
Query: 77 RVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHR 136
RV++ L D M+F+L DA++ANA RR++I+E+PT+AI+ V I N+SV+ DE +AHR
Sbjct: 11 RVKIRELKDDYMKFELRDTDASVANALRRVMISEVPTVAIDLVEIEVNSSVLNDEFIAHR 70
Query: 137 LGLIPIIVDPRLFEYMS------ENDTSNEKNTIVFKLHVLCERGGPRLTVKTNELKWLP 190
LGLIP+ + + S + D E ++ F L V R+T +T L
Sbjct: 71 LGLIPLTSERAMAMRFSRDCDACDGDGQCEYCSVEFHLRV------KRITDQT-----LD 119
Query: 191 NGSELPLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPMLDITIARLGPGQEIELE 250
S+ + + P P S S I I +L GQE+ L
Sbjct: 120 VSSKDLISSDHTVTPVDVPGGDASIESDG--------------RGIIIVKLRRGQELRLR 165
Query: 251 AHAVKGIGKTHAKWSPVATAWYRMLPEIVLLEDVED----EDAEKLVKTCPVNVFDIEDI 306
A A KGIGK HAKWSP AT + P+I + ED+ + E+ ++ V + P VFDI+ +
Sbjct: 166 AIARKGIGKDHAKWSPAATVTFMYEPDIHINEDLMESLTLEEKKEWVDSSPTRVFDIDPV 225
Query: 307 GSGKKRATVAQPRACTLCRECLRCGEEWEK--RVSIRRVKDHFI 348
++ V P A + E ++ E K + I +D FI
Sbjct: 226 ---TQQVMVVDPEAYSYDDEVIKKAEAMGKPGLIEITAKQDSFI 266
>gi|408381888|ref|ZP_11179435.1| DNA-directed RNA polymerase subunit D [Methanobacterium formicicum
DSM 3637]
gi|407815336|gb|EKF85921.1| DNA-directed RNA polymerase subunit D [Methanobacterium formicicum
DSM 3637]
Length = 266
Score = 115 bits (289), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 87/260 (33%), Positives = 128/260 (49%), Gaps = 47/260 (18%)
Query: 90 FDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRLGLIPIIVDPRLF 149
F + G+D ++ NA RRI + E+PT+AIE V N + I DE LAHRLGL+P+
Sbjct: 15 FTVDGVDVSMVNALRRISMVEVPTLAIETVEFLKNDARIFDEALAHRLGLVPL------- 67
Query: 150 EYMSENDTSNEKNTIVFKLHVLCERGGPRLTVKTNELKWLPNGSELPLETKPDSNPSSKP 209
S + ++V CE R +V L L+ K P
Sbjct: 68 --------STDTESMVMPEDCDCEGRCSRCSVS------------LILKGK-------GP 100
Query: 210 RTYTSFSSSQDLLPEFSNNPIRPMLD-ITIARLGPGQEIELEAHAVKGIGKTHAKWSPVA 268
+T S DL E SN I+P+LD I + +L G+E+ELEA A G+G HAKW P
Sbjct: 101 KTLYS----GDLKSEDSN--IKPVLDTIPLVKLKEGEEVELEAIAQLGLGSDHAKWQPTT 154
Query: 269 TAWYRMLPEIVLLEDVEDEDAEKLVKTCPVNVFDIEDIGSGKKRATVAQPRACTLCRECL 328
T+ Y+ PEI + +D + E VK CP NV + ++ + TV C++CR C+
Sbjct: 155 TSAYKHYPEITIDQD-KCEACLDCVKECPRNVLEYDE---KNNQITVVDLENCSMCRTCV 210
Query: 329 RCGEEWEKRVSIRRVKDHFI 348
+ + +++ V+D FI
Sbjct: 211 K--DCQNNAITVEIVEDKFI 228
>gi|84489668|ref|YP_447900.1| DNA-directed RNA polymerase subunit D [Methanosphaera stadtmanae
DSM 3091]
gi|121731854|sp|Q2NFZ6.1|RPOD_METST RecName: Full=DNA-directed RNA polymerase subunit D
gi|84372987|gb|ABC57257.1| RpoD [Methanosphaera stadtmanae DSM 3091]
Length = 270
Score = 115 bits (288), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 87/266 (32%), Positives = 121/266 (45%), Gaps = 50/266 (18%)
Query: 90 FDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRLGLIPIIVDPRLF 149
F + G+D N RRI + E+PT+AIE V I N + + DEVLAHRLGLIPI+ D +
Sbjct: 15 FVVEGVDDTFINTIRRICLVEIPTLAIEDVNIYKNDAKMFDEVLAHRLGLIPIVTDLDSY 74
Query: 150 EYMSENDTSN--EKNTIVFKLHVLCERGGPRLTVKTNELKWLPNGSELPLETKPDSNPSS 207
SE D + + + F L CE G V + +LK
Sbjct: 75 VMPSECDCESGCQHCRVSFLLKEKCEEGNDSKIVYSKDLK-------------------- 114
Query: 208 KPRTYTSFSSSQDLLPEFSNNP-IRPMLD-ITIARLGPGQEIELEAHAVKGIGKTHAKWS 265
S++P ++P+ D I I RL G+E+ELEA A G+G HAKW
Sbjct: 115 ------------------SDDPAVKPVYDTIPIVRLREGEEVELEAIAELGLGSEHAKWQ 156
Query: 266 PVATAWYRMLPEIVLLEDVED-EDAEKLVKTCPVNVFDIEDIGSGKKRATVAQPRACTLC 324
T Y+ P+I + D E D E+ V+ CP NV IED V C+ C
Sbjct: 157 ATTTCGYKYYPKIEI--DTEKVNDLEEYVEECPRNVLQIED-----DTLVVGNIENCSTC 209
Query: 325 RECLRCGEEWEKRVSIRRVKDHFICK 350
R C R E+ + + + + +I K
Sbjct: 210 RTCQRLSEKDDNAIVVDFEESKYIFK 235
>gi|449442251|ref|XP_004138895.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB3-A-like
[Cucumis sativus]
Length = 320
Score = 115 bits (288), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 92/284 (32%), Positives = 139/284 (48%), Gaps = 38/284 (13%)
Query: 77 RVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHR 136
+V++ L D +F+L DA++ANA RR++IAE+PT+AI+ V I N+SV+ DE +AHR
Sbjct: 11 KVKIRELRDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFIAHR 70
Query: 137 LGLIPIIVDPRLFEYMS------ENDTSNEKNTIVFKLHVLCERGGPRLTVKTNELKWLP 190
LGLIP+ + + S + D E ++ F L C L V + +L +
Sbjct: 71 LGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKC-HSDQTLDVTSKDL-YSS 128
Query: 191 NGSELPLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPMLDITIARLGPGQEIELE 250
+ + +P++ FS S E + I I +L GQE+ L
Sbjct: 129 DHTVVPVD----------------FSDSAAATGEALDTK-----GIIIVKLRRGQELRLR 167
Query: 251 AHAVKGIGKTHAKWSPVATAWYRMLPEIVLLEDVED----EDAEKLVKTCPVNVFDIEDI 306
A A KGIGK HAKWSP AT + P I + ED+ + E+ V++CP VF+++ +
Sbjct: 168 AIARKGIGKDHAKWSPAATVTFMYEPSIHINEDLMETLTLEEKRTWVESCPTRVFELDTV 227
Query: 307 GSGKKRATVAQPRACTLCRECLRCGEEWEKR--VSIRRVKDHFI 348
+ V P A T E ++ E K V I +D FI
Sbjct: 228 ---THQVMVVDPEAYTYDDEVIKKAEAMGKAGLVDITAREDSFI 268
>gi|15226523|ref|NP_179145.1| DNA-directed RNA polymerase II subunit RPB3-A [Arabidopsis
thaliana]
gi|11134646|sp|Q39211.1|RPB3A_ARATH RecName: Full=DNA-directed RNA polymerase II subunit RPB3-A;
Short=RNA polymerase II subunit 3-A; Short=RNA
polymerase II subunit B3-A; AltName: Full=DNA-directed
RNA polymerase II 36 kDa polypeptide A
gi|514318|gb|AAB03741.1| RNA polymerase II third largest subunit [Arabidopsis thaliana]
gi|4544370|gb|AAD22281.1| DNA-directed RNA polymerase II, third largest subunit [Arabidopsis
thaliana]
gi|17381018|gb|AAL36321.1| putative DNA-directed RNA polymerase II third largest subunit
[Arabidopsis thaliana]
gi|20465883|gb|AAM20046.1| putative DNA-directed RNA polymerase II [Arabidopsis thaliana]
gi|330251306|gb|AEC06400.1| DNA-directed RNA polymerase II subunit RPB3-A [Arabidopsis
thaliana]
Length = 319
Score = 115 bits (287), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 90/267 (33%), Positives = 134/267 (50%), Gaps = 38/267 (14%)
Query: 81 IRLTKDDM-EFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRLGL 139
IR KDD +F+L D ++ANA RR++I+E+PT+AI+ V I N+SV+ DE +AHRLGL
Sbjct: 14 IRELKDDYAKFELRETDVSMANALRRVMISEVPTVAIDLVEIEVNSSVLNDEFIAHRLGL 73
Query: 140 IPIIVDPRLFEYMS------ENDTSNEKNTIVFKLHVLCERGGPRLTVKTNELKWLPNGS 193
IP+ + + S + D E ++ F+L C L V + +L
Sbjct: 74 IPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFRLSSKCVT-DQTLDVTSRDLY------ 126
Query: 194 ELPLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPMLDITIARLGPGQEIELEAHA 253
++P+ P +T SS D I I +L GQE++L A A
Sbjct: 127 --------SADPTVTPVDFTIDSSVSDSSEHKG---------IIIVKLRRGQELKLRAIA 169
Query: 254 VKGIGKTHAKWSPVATAWYRMLPEIVLLEDVED--EDAEK--LVKTCPVNVFDIEDIGSG 309
KGIGK HAKWSP AT + P+I++ ED+ D D EK L+++ P VF ++ +
Sbjct: 170 RKGIGKDHAKWSPAATVTFMYEPDIIINEDMMDTLSDEEKIDLIESSPTKVFGMDPV--- 226
Query: 310 KKRATVAQPRACTLCRECLRCGEEWEK 336
++ V P A T E ++ E K
Sbjct: 227 TRQVVVVDPEAYTYDEEVIKKAEAMGK 253
>gi|342185050|emb|CCC94532.1| unnamed protein product [Trypanosoma congolense IL3000]
Length = 258
Score = 115 bits (287), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 79/254 (31%), Positives = 122/254 (48%), Gaps = 50/254 (19%)
Query: 103 FRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRLGLIPIIVDPRLFEYMSEN-----DT 157
FRR++I E+P +A ++VLI N V+ DEVL HR+GLIP+ +Y++++ D
Sbjct: 2 FRRLMITEVPVLAFDRVLIEENDGVVPDEVLCHRIGLIPLAGPVTWMKYITDSHSVTIDN 61
Query: 158 SNEKNTIVFKLHVLCERGGPRLTVKTNELKWLPNGSELPLETKPDSNPSSKPRTYTSFSS 217
+ + +VF+L V + G +V + +LKW P S+ + K + N R +
Sbjct: 62 LDPAHVLVFELDVEGQHGVQATSVYSGDLKWRPLRSQEEVAAKSEDN-----RVFL---- 112
Query: 218 SQDLLPEFSNNPIRPMLDITIARLGPGQEIELEAHAVKGIGKTHAKWSPVATAWYRMLPE 277
+ P DI + RLGPGQ ++L A A+KGIG HAKWSPVA +Y + E
Sbjct: 113 ------------VHP--DIVLTRLGPGQRLKLRAIAIKGIGVVHAKWSPVAACFYEIRHE 158
Query: 278 IV---------------LLEDVEDEDAEKLVKTCPVNVFDIEDIGSGKKR-------ATV 315
V L D ++E+AE + P + ++ + K R +V
Sbjct: 159 AVRKEEETRPKRHSSRHLRHDADNEEAEDVDLGSPASARGANNVSTQKGREIVRFTVESV 218
Query: 316 AQPRACTLCRECLR 329
Q A + R LR
Sbjct: 219 GQLSAADVFRHALR 232
>gi|302803341|ref|XP_002983424.1| hypothetical protein SELMODRAFT_180179 [Selaginella moellendorffii]
gi|300149109|gb|EFJ15766.1| hypothetical protein SELMODRAFT_180179 [Selaginella moellendorffii]
Length = 320
Score = 114 bits (286), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 97/281 (34%), Positives = 134/281 (47%), Gaps = 39/281 (13%)
Query: 81 IRLTKDD-MEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRLGL 139
IR KDD ++F+L DA+IANA RR++IAE+PT+AI+ V I N+SV+ DE +AHRLGL
Sbjct: 13 IRDLKDDFLKFELRDTDASIANALRRVIIAEVPTLAIDLVEIEANSSVLNDEFIAHRLGL 72
Query: 140 IPIIVDPRLFEYMS------ENDTSNEKNTIVFKLHVLCERGGPRLTVKTNELKWLPNGS 193
IP+ D + S + D + +I F L V C S
Sbjct: 73 IPLTSDKAMEMRYSRDCDECDGDGRCDYCSIEFTLSVKC-------------------TS 113
Query: 194 ELPLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPMLDITIARLGPGQEIELEAHA 253
E L+ SS + S D P+ N I I +L GQE++L A A
Sbjct: 114 EETLDVTSHDLQSSDSQVVPVDSIGHD--PDIEN--FNQKKGILIVKLRKGQELKLRAIA 169
Query: 254 VKGIGKTHAKWSPVATAWYRMLPEI----VLLEDVEDEDAEKLVKTCPVNVFDIEDIGSG 309
KGI K HAKWSP AT ++ P+I L+E + E+ + V + P VF +I
Sbjct: 170 RKGIAKDHAKWSPAATVTFQYEPDIHINENLMETLSLEEKREWVDSSPTKVF---EINPE 226
Query: 310 KKRATVAQPRACTLCRECLRCGEEWEK--RVSIRRVKDHFI 348
++ V P A T E ++ E K V I +D FI
Sbjct: 227 TQQVEVVDPEAYTYDDEVIKKAEAMGKPGLVEIYGKEDSFI 267
>gi|302754380|ref|XP_002960614.1| hypothetical protein SELMODRAFT_75337 [Selaginella moellendorffii]
gi|300171553|gb|EFJ38153.1| hypothetical protein SELMODRAFT_75337 [Selaginella moellendorffii]
Length = 320
Score = 114 bits (285), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 97/281 (34%), Positives = 134/281 (47%), Gaps = 39/281 (13%)
Query: 81 IRLTKDD-MEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRLGL 139
IR KDD ++F+L DA+IANA RR++IAE+PT+AI+ V I N+SV+ DE +AHRLGL
Sbjct: 13 IRDLKDDFLKFELRDTDASIANALRRVIIAEVPTLAIDLVEIEANSSVLNDEFIAHRLGL 72
Query: 140 IPIIVDPRLFEYMS------ENDTSNEKNTIVFKLHVLCERGGPRLTVKTNELKWLPNGS 193
IP+ D + S + D + +I F L V C S
Sbjct: 73 IPLTSDKAMEMRYSRDCDECDGDGRCDYCSIEFTLSVKC-------------------TS 113
Query: 194 ELPLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPMLDITIARLGPGQEIELEAHA 253
E L+ SS + S D P+ N I I +L GQE++L A A
Sbjct: 114 EETLDVTSHDLQSSDSQVVPVDSIGHD--PDIEN--FNQKKGILIVKLRKGQELKLRAIA 169
Query: 254 VKGIGKTHAKWSPVATAWYRMLPEI----VLLEDVEDEDAEKLVKTCPVNVFDIEDIGSG 309
KGI K HAKWSP AT ++ P+I L+E + E+ + V + P VF +I
Sbjct: 170 RKGIAKDHAKWSPAATVTFQYEPDIHINENLMETLSVEEKREWVDSSPTKVF---EINPE 226
Query: 310 KKRATVAQPRACTLCRECLRCGEEWEK--RVSIRRVKDHFI 348
++ V P A T E ++ E K V I +D FI
Sbjct: 227 TQQVEVIDPEAYTYDDEVIKKAEAMGKPGLVEIYGKEDSFI 267
>gi|410721684|ref|ZP_11361014.1| DNA-directed RNA polymerase, alpha subunit/40 kD subunit
[Methanobacterium sp. Maddingley MBC34]
gi|410598430|gb|EKQ53003.1| DNA-directed RNA polymerase, alpha subunit/40 kD subunit
[Methanobacterium sp. Maddingley MBC34]
Length = 266
Score = 114 bits (285), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 89/274 (32%), Positives = 127/274 (46%), Gaps = 47/274 (17%)
Query: 76 FRVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAH 135
+E+ D + F + G+D ++ NA RRI + E+PT+AIE V I N + I DE LAH
Sbjct: 1 MEIEIKTRENDQLIFTVEGVDVSMVNALRRISMVEVPTLAIETVEILKNDARIFDEALAH 60
Query: 136 RLGLIPIIVDPRLFEYMSENDTSNEKNTIVFKLHVLCERGGPRLTVKTNELKWLPNGSEL 195
RLGL+P+ D L + D E + C R L +K K L +G
Sbjct: 61 RLGLVPLTTD--LESLVPAEDCDCEGH---------CSRCSISLILKGKGPKTLYSG--- 106
Query: 196 PLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPMLD-ITIARLGPGQEIELEAHAV 254
DL E N ++P+LD I + +L G E+ELEA A
Sbjct: 107 ------------------------DLKSEDPN--LKPVLDTIPLVKLKEGDEVELEAIAQ 140
Query: 255 KGIGKTHAKWSPVATAWYRMLPEIVLLEDVEDEDAEKLVKTCPVNVFDIEDIGSGKKRAT 314
G GK HAKW P T Y+ PEI + D + E VK CP NV + + + T
Sbjct: 141 LGFGKEHAKWQPTTTCAYKHYPEINIDLD-KCEACLDCVKECPRNVLEFNE---KNNQIT 196
Query: 315 VAQPRACTLCRECLRCGEEWEKRVSIRRVKDHFI 348
V C++CR C++ + K +++ V+D FI
Sbjct: 197 VVDLENCSMCRTCVK--DCQNKAITVEIVEDKFI 228
>gi|297832024|ref|XP_002883894.1| RBP36A [Arabidopsis lyrata subsp. lyrata]
gi|297329734|gb|EFH60153.1| RBP36A [Arabidopsis lyrata subsp. lyrata]
Length = 319
Score = 114 bits (285), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 89/267 (33%), Positives = 137/267 (51%), Gaps = 38/267 (14%)
Query: 81 IRLTKDDM-EFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRLGL 139
IR KDD +F+L D ++ANA RR++I+E+PT+AI+ V I N+SV+ DE +A RLGL
Sbjct: 14 IRELKDDYAKFELRETDVSMANALRRVMISEVPTIAIDLVNIEVNSSVLNDEFIAQRLGL 73
Query: 140 IPIIVDPRL-FEYMSENDTSNEKN-----TIVFKLHVLCERGGPRLTVKTNELKWLPNGS 193
IP+ + + + + D + + ++ F L C L V + +L
Sbjct: 74 IPLTSERAMSMRFCQDCDACDGEGQCEFCSVEFPLSAKC-VTDQTLDVTSRDLY------ 126
Query: 194 ELPLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPMLDITIARLGPGQEIELEAHA 253
++P+ P +T SS+ D + ITI +L GQE++L+A A
Sbjct: 127 --------SADPTVTPVDFTIDSSASDSSEQKG---------ITIVKLRRGQELKLKAIA 169
Query: 254 VKGIGKTHAKWSPVATAWYRMLPEIVLLEDVED--EDAEK--LVKTCPVNVFDIEDIGSG 309
KGIGK HAKWSP AT + P+I++ ED+ D D EK L+++ P VF I+ +
Sbjct: 170 RKGIGKDHAKWSPAATVTFMYEPDIIINEDLMDTLTDEEKIDLIESSPTKVFGIDPV--- 226
Query: 310 KKRATVAQPRACTLCRECLRCGEEWEK 336
++ V P A T E ++ E K
Sbjct: 227 TRQVVVVDPEAYTYDEEVIKKAEAMGK 253
>gi|88687066|emb|CAJ43894.1| RNA polymerase I subunit RPC40 [Trypanosoma brucei brucei]
Length = 337
Score = 114 bits (285), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 61/189 (32%), Positives = 102/189 (53%), Gaps = 28/189 (14%)
Query: 91 DLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRLGLIPIIVDPRLFE 150
D+ + +AN FRR+++ E+P A +++LI +N V+ DE+LAHR+GL+P+ +
Sbjct: 54 DMDNVSPPVANMFRRLMLTEVPAFAFDRILIEHNDGVVPDELLAHRIGLVPLAGPVSSMQ 113
Query: 151 YMSEN-----DTSNEKNTIVFKLHVLCERGGPRLTVKTNELKWLPNGSELPLETKPDSNP 205
Y++++ D + + ++F+L V +R P +V + LKW P + L + + +
Sbjct: 114 YITDSASVGFDNLDPERVLLFELDVTAKRDVPTTSVYSGHLKWQPIAKQEELAARSEDD- 172
Query: 206 SSKPRTYTSFSSSQDLLPEFSNNPIRPMLDITIARLGPGQEIELEAHAVKGIGKTHAKWS 265
R + + P DI + RLGPGQ ++L A A+KGIG HAKW+
Sbjct: 173 ----RVFL----------------VHP--DIVLTRLGPGQRLKLRAIAIKGIGAVHAKWT 210
Query: 266 PVATAWYRM 274
PVA +Y M
Sbjct: 211 PVAACFYEM 219
>gi|84999910|ref|XP_954676.1| DNA-directed RNA polymerase ii [Theileria annulata]
gi|65305671|emb|CAI73996.1| DNA-directed RNA polymerase ii, putative [Theileria annulata]
Length = 354
Score = 114 bits (285), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 95/307 (30%), Positives = 139/307 (45%), Gaps = 66/307 (21%)
Query: 78 VEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRL 137
+EV+ L KD M+F L+ D + ANA RR++++E+P++AIE V + NTSV+ DE ++HRL
Sbjct: 12 IEVVDLRKDRMDFILLNSDVSTANAIRRVILSEIPSLAIEIVTVLENTSVLHDEYISHRL 71
Query: 138 GLIPIIVDPRL---FEYMSENDTSNE--KNTIVFKLHVLCERGGPRLTVKTNELKWLPN- 191
GL+PI D L FE+ +++ K T+ + L V C RL +P+
Sbjct: 72 GLLPI--DSTLASEFEFRDRCQCTDKCAKCTVDYTLDVSCNDSNSRLVT---HFDIVPDD 126
Query: 192 -------GSELPLETKPDSNPSSKPRT-YTSFSSSQDLLPEFSNNPIRPMLDITIARLGP 243
G LP+ PR T+F+ + D +P I +L
Sbjct: 127 THSKSIYGKNLPMPI---------PRADVTNFNGATDGIP--------------IVKLKR 163
Query: 244 GQEIELEAHAVKGIGKTHAKWSPVATAWYRMLPEI----VLLEDVEDEDAEKLVKTCPVN 299
GQ I ++ A KG+GK HAKW VA Y+M P L+E + ++ + +CP N
Sbjct: 164 GQSINMKLTASKGLGKFHAKWI-VANVNYKMEPRFSFNSALMEQLSSDEKAGIAASCPRN 222
Query: 300 VFDIEDIGS------GKKRAT---------VAQPRACTLCRECLR-CGEEWEK---RVSI 340
VF + S G T V C C EC+ C E K R+
Sbjct: 223 VFKYTGVRSENPSFLGHSDKTFKLDAGGLQVVNKLDCIYCDECINYCRELGHKDLIRIQP 282
Query: 341 RRVKDHF 347
K HF
Sbjct: 283 DESKFHF 289
>gi|237834427|ref|XP_002366511.1| DNA-directed RNA polymerase II, putative [Toxoplasma gondii ME49]
gi|211964175|gb|EEA99370.1| DNA-directed RNA polymerase II, putative [Toxoplasma gondii ME49]
gi|221501508|gb|EEE27282.1| DNA-directed RNA polymerase II, putative [Toxoplasma gondii VEG]
Length = 484
Score = 114 bits (284), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 87/273 (31%), Positives = 133/273 (48%), Gaps = 27/273 (9%)
Query: 80 VIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRLGL 139
V ++++ ++F L D +IAN RR++I+E+P++AI+ V + NTSV+ DE ++HRLGL
Sbjct: 155 VKEVSQNKVKFLLENCDVSIANGLRRVMISEVPSLAIDLVTVYENTSVLHDEYISHRLGL 214
Query: 140 IPIIVDPRLFEYMSENDTS----NEKNTIVFKLHVLCERGGPRLTVKTNELKWLPNGSEL 195
+PI R+ E+++ +D + ++ + L V+CER L + + G+ L
Sbjct: 215 LPID-STRVAEFVNRDDCDCADHCSRCSVQYALDVVCER-DSLLVTHRDIVADNARGASL 272
Query: 196 PLETKPD-SNPSSKPRTYTSFSSSQDLLPEFSNNPIRPMLDITIARLGPGQEIELEAHAV 254
D P P LL E + M I I +L Q + + A
Sbjct: 273 ASAGFLDLGCPMPVP-----------LLREMQE---KEMDGIPIVKLRKNQSVNMRMTAT 318
Query: 255 KGIGKTHAKWSPVATAWYRMLPEIVLLEDV----EDEDAEKLVKTCPVNVFD-IEDIGSG 309
KGIGK HAKWSPVATA Y+ PEI ED+ E ++ +CP VF I+D +G
Sbjct: 319 KGIGKVHAKWSPVATASYKFEPEIAFEEDLLARAPAEVKRQIAASCPREVFSFIDDTATG 378
Query: 310 KKRA-TVAQPRACTLCRECLRCGEEWEKRVSIR 341
V C C +C +E R +R
Sbjct: 379 GTGVLRVENKMNCIFCDQCKVKAQELGFRRLVR 411
>gi|221486200|gb|EEE24470.1| DNA-directed RNA polymerase II, putative [Toxoplasma gondii GT1]
Length = 484
Score = 113 bits (283), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 87/273 (31%), Positives = 133/273 (48%), Gaps = 27/273 (9%)
Query: 80 VIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRLGL 139
V ++++ ++F L D +IAN RR++I+E+P++AI+ V + NTSV+ DE ++HRLGL
Sbjct: 155 VKEVSQNKVKFLLENCDVSIANGLRRVMISEVPSLAIDLVTVYENTSVLHDEYISHRLGL 214
Query: 140 IPIIVDPRLFEYMSENDTS----NEKNTIVFKLHVLCERGGPRLTVKTNELKWLPNGSEL 195
+PI R+ E+++ +D + ++ + L V+CER L + + G+ L
Sbjct: 215 LPID-STRVAEFVNRDDCDCADHCSRCSVQYALDVVCER-DSLLVTHRDIVADNARGASL 272
Query: 196 PLETKPD-SNPSSKPRTYTSFSSSQDLLPEFSNNPIRPMLDITIARLGPGQEIELEAHAV 254
D P P LL E + M I I +L Q + + A
Sbjct: 273 ASAGFLDLGCPMPVP-----------LLREMQE---KEMDGIPIVKLRKNQSVNMRMTAT 318
Query: 255 KGIGKTHAKWSPVATAWYRMLPEIVLLEDV----EDEDAEKLVKTCPVNVFD-IEDIGSG 309
KGIGK HAKWSPVATA Y+ PEI ED+ E ++ +CP VF I+D +G
Sbjct: 319 KGIGKVHAKWSPVATASYKFEPEIAFEEDLLARAPAEVKRQIAASCPREVFSFIDDTATG 378
Query: 310 KKRA-TVAQPRACTLCRECLRCGEEWEKRVSIR 341
V C C +C +E R +R
Sbjct: 379 GTGVLRVENKMNCIYCDQCKVKAQELGFRRLVR 411
>gi|355570776|ref|ZP_09042046.1| DNA-directed RNA polymerase subunit D [Methanolinea tarda NOBI-1]
gi|354826058|gb|EHF10274.1| DNA-directed RNA polymerase subunit D [Methanolinea tarda NOBI-1]
Length = 281
Score = 113 bits (283), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 89/280 (31%), Positives = 128/280 (45%), Gaps = 57/280 (20%)
Query: 78 VEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRL 137
+E++R+ F L G A ANAFRR +I E+PT+AIE V I +NTS + DE+LAHRL
Sbjct: 3 IEILRMDDSQARFCLSGPSQAFANAFRRAMIGEVPTLAIEDVRIYDNTSALFDEMLAHRL 62
Query: 138 GLIPIIVDPRLFEYMSENDTSNEKNTIVFKLHVLCERGGPRLTVKTNELKWLPNGSELPL 197
GLIPI +P L+ + E C+R G T+ E P
Sbjct: 63 GLIPIKTEPGLYVPQDKCSCGGEG----------CDRCGVAFTLSV----------EGP- 101
Query: 198 ETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPMLD-ITIARLGPGQEIELEAHAVKG 256
S+DL+P+ + P +D I I +LG Q++ LEA AV
Sbjct: 102 ----------------GMVYSRDLIPQ--DPRAVPAVDTIPIVKLGKDQKVVLEARAVLN 143
Query: 257 IGKTHAKWSPVATAWYRMLPEIVLLEDVED--EDAEKLVKTCPVNVFDIEDIGSGKKRAT 314
G+ HAKW P ++ P I DV + + + V CP ++ ++ + R T
Sbjct: 144 CGRVHAKWQPTTACGFKNYPVI----DVSNRCDGCGRCVDECPRSILEVRN-----GRVT 194
Query: 315 VAQPR--ACTLCR----ECLRCGEEWEKRVSIRRVKDHFI 348
V + R C+LCR C+ G E ++I K FI
Sbjct: 195 VIENRLEECSLCRLCEKACMSTGIGEEPAITITSEKSRFI 234
>gi|156082852|ref|XP_001608910.1| DNA-directed RNA polymerase II [Babesia bovis T2Bo]
gi|154796160|gb|EDO05342.1| DNA-directed RNA polymerase II, putative [Babesia bovis]
Length = 382
Score = 112 bits (281), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 97/312 (31%), Positives = 139/312 (44%), Gaps = 47/312 (15%)
Query: 78 VEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRL 137
++++ LT M F L+ D A AN+ RRI+++E+P++AIE V + NTSV+ DE +AHRL
Sbjct: 12 IDIVSLTSTKMIFILLNADVATANSLRRIMLSEIPSLAIEVVTVLENTSVLHDEYIAHRL 71
Query: 138 GLIPI-IVDPRLFEYMSENDTSNE--KNTIVFKLHVLCERGGPRLT-VKTNELKW----- 188
GL+PI R FEY + S++ + T+ + L V C +T N W
Sbjct: 72 GLLPIESSSARNFEYRDKCTCSDKCSRCTVEYSLDVKCMDDTRVVTHYDINLDSWENSRG 131
Query: 189 -------LPNGSELPLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPML------- 234
+P S L P S R +SS + NP P
Sbjct: 132 NVNAPMPVPRPSADALGNAPGDQGSDPQR----VNSSGNATARNVQNPDGPHTGAVDRKS 187
Query: 235 ------DITIARLGPGQEIELEAHAVKGIGKTHAKWSPVATAWYRMLPEIVLLEDVEDE- 287
I I +L GQ + L+ A KG+GK HAKW VA Y+M P I + V ++
Sbjct: 188 GSVPTGGIPIVKLKRGQCLSLKMTATKGLGKFHAKWM-VANVAYKMEPVITINRQVAEKM 246
Query: 288 ---DAEKLVKTCPVNVFDIEDIGSGKKRATVAQ-----PRACTLCRECLRCGEEWEKRVS 339
+ ++V++CP VF + + AT A+ C C ECL E R
Sbjct: 247 NLNEKTQIVQSCPRKVFKLSNPHGAYSTATKAEIVIDNNLNCIYCDECLNQAREMGYRDL 306
Query: 340 IR----RVKDHF 347
IR K HF
Sbjct: 307 IRVQPDETKFHF 318
>gi|71031829|ref|XP_765556.1| DNA-directed RNA polymerase II [Theileria parva strain Muguga]
gi|68352513|gb|EAN33273.1| DNA-directed RNA polymerase II, putative [Theileria parva]
Length = 354
Score = 112 bits (280), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 90/297 (30%), Positives = 136/297 (45%), Gaps = 62/297 (20%)
Query: 78 VEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRL 137
+E++ L KD M+F L+ D + ANA RR++++E+P++AIE V + NTSV+ DE ++HRL
Sbjct: 12 IEIVDLRKDRMDFILLNSDVSTANAIRRVILSEIPSLAIEIVTVLENTSVLHDEYISHRL 71
Query: 138 GLIPIIVDPRL---FEYMSENDTSNE--KNTIVFKLHVLCERGGPRLTVKTNELKWLPN- 191
GL+PI D L FE+ +++ K T+ + L V C+ R+ +P+
Sbjct: 72 GLLPI--DSTLASEFEFRDRCQCTDKCAKCTVDYTLDVSCKDSDSRVVT---HFDIVPDD 126
Query: 192 -------GSELPLETKPDSNPSSKPRT-YTSFSSSQDLLPEFSNNPIRPMLDITIARLGP 243
G LP+ PR T+F+ + D +P I +L
Sbjct: 127 THSKSIYGKNLPMPI---------PRADVTNFNGATDGIP--------------IVKLKR 163
Query: 244 GQEIELEAHAVKGIGKTHAKWSPVATAWYRMLPEI----VLLEDVEDEDAEKLVKTCPVN 299
G I ++ A KG+GK HAKW VA Y+M P L+E + E+ + +CP N
Sbjct: 164 GHSINMKLTASKGLGKFHAKWI-VANVNYKMEPRFSFNSSLMEQLSSEEKAGIAASCPRN 222
Query: 300 VFDIEDIGS------GKKRAT---------VAQPRACTLCRECLRCGEEWEKRVSIR 341
VF + S G T V AC C EC+ E + IR
Sbjct: 223 VFKYTGVRSEAPSFLGPSDKTFKLDAAGLHVVDKLACIYCDECINYCRELGHKDLIR 279
>gi|294892119|ref|XP_002773904.1| conjugation stage-specific protein, putative [Perkinsus marinus
ATCC 50983]
gi|239879108|gb|EER05720.1| conjugation stage-specific protein, putative [Perkinsus marinus
ATCC 50983]
Length = 336
Score = 112 bits (280), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 84/263 (31%), Positives = 129/263 (49%), Gaps = 36/263 (13%)
Query: 78 VEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRL 137
+EV LT D ++F + + AIANA RRI+IAE+PT+AI+ V I N+S + DE +AHRL
Sbjct: 15 IEVTMLTADLIKFTIFNANQAIANALRRIMIAEVPTLAIDTVTIEENSSPLFDEFVAHRL 74
Query: 138 GLIPI-------IVDPRLFEYMSENDTSNEKNTIVFKLHVLCERGGPRLTVKTNELKWLP 190
GL+PI DP+ + S S T+ + L V+ E G V +++ +
Sbjct: 75 GLLPINSKEVDSYSDPKDCQCYS----SCPNCTVKYTLDVIAEDHG-VTDVTHLDIQPVD 129
Query: 191 NGSELPLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPMLDITIARLGPGQEIELE 250
G+ +P +P P RT T + ++ I IA+L Q++ +
Sbjct: 130 QGTSIPESRRPLPVPLWD-RTKTEEENRRN--------------GIVIAKLRRNQQLTMH 174
Query: 251 AHAVKGIGKTHAKWSPVATAWYRMLPEIVLLEDVEDE-----DAEKLVKTCPVNVFDIED 305
A KG+GK HAKW+P T R P I + +E E + + +V++CP V D++
Sbjct: 175 MEARKGVGKMHAKWNPTGTVAIRYEPVITIDRAIEYEKLSVAERKAIVRSCPKRVLDLD- 233
Query: 306 IGSGKKRATVAQPRACTLCRECL 328
R V + C C EC+
Sbjct: 234 ---AADRIQVVRKDLCDFCDECV 253
>gi|21593370|gb|AAM65319.1| DNA-directed RNA polymerase II, third largest subunit [Arabidopsis
thaliana]
Length = 319
Score = 112 bits (280), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 89/267 (33%), Positives = 133/267 (49%), Gaps = 38/267 (14%)
Query: 81 IRLTKDDM-EFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRLGL 139
IR KDD +F+L D ++ANA RR++I+E+PT+AI+ V I N+SV+ DE +AHRLGL
Sbjct: 14 IRELKDDYAKFELRETDVSMANALRRVMISEVPTVAIDLVEIEVNSSVLNDEFIAHRLGL 73
Query: 140 IPIIVDPRLFEYMS------ENDTSNEKNTIVFKLHVLCERGGPRLTVKTNELKWLPNGS 193
I + + + S + D E ++ F+L C L V + +L
Sbjct: 74 ISLTSERAMSMRFSRDCDACDGDGQCEFCSVEFRLSSKCVT-DQTLDVTSRDLY------ 126
Query: 194 ELPLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPMLDITIARLGPGQEIELEAHA 253
++P+ P +T SS D I I +L GQE++L A A
Sbjct: 127 --------SADPTVTPVDFTIDSSVSDSSEHKG---------IIIVKLRRGQELKLRAIA 169
Query: 254 VKGIGKTHAKWSPVATAWYRMLPEIVLLEDVED--EDAEK--LVKTCPVNVFDIEDIGSG 309
KGIGK HAKWSP AT + P+I++ ED+ D D EK L+++ P VF ++ +
Sbjct: 170 RKGIGKDHAKWSPAATVTFMYEPDIIINEDMMDTLSDEEKIDLIESSPTKVFGMDPV--- 226
Query: 310 KKRATVAQPRACTLCRECLRCGEEWEK 336
++ V P A T E ++ E K
Sbjct: 227 TRQVVVVDPEAYTYDEEVIKKAEAMGK 253
>gi|392574290|gb|EIW67427.1| hypothetical protein TREMEDRAFT_45370 [Tremella mesenterica DSM
1558]
Length = 361
Score = 112 bits (279), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 74/209 (35%), Positives = 114/209 (54%), Gaps = 14/209 (6%)
Query: 74 NNFRVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVL 133
N RV V LTKD++ F+L G++ A+AN+ RR+++A++PT+ I++VL A NTS I DE+L
Sbjct: 23 NQPRVLVRSLTKDEVNFNLSGMELALANSIRRVMMADVPTVCIDQVLFAQNTSPIPDEML 82
Query: 134 AHRLGLIPIIVDPRLFEYMSENDTSNEKN----TIVFKLHVLCERG--GPRLTVKTNELK 187
AHRLG++P+I +D ++ T+ +L V G G + + +N L+
Sbjct: 83 AHRLGMVPLISRNVSKGLRRTSDCDCDEGCYYCTVTLRLKVSYTHGERGKFMPITSNMLE 142
Query: 188 WLPNGSELPLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPMLDITIARLGPGQEI 247
+PN P PD +P + + + P N+P P I +A+L GQEI
Sbjct: 143 VVPN----PYGPPPDLSPDDQ--QVINNRDPELGQPVGKNDPATP--PILLAKLSRGQEI 194
Query: 248 ELEAHAVKGIGKTHAKWSPVATAWYRMLP 276
+L A GI K HAKWSP++ + P
Sbjct: 195 DLTCKAYSGIAKFHAKWSPLSAVAFEYDP 223
>gi|223998876|ref|XP_002289111.1| RP3A,-like protein to dna-directed RNA polymerase II third largest
subunit [Thalassiosira pseudonana CCMP1335]
gi|220976219|gb|EED94547.1| RP3A,-like protein to dna-directed RNA polymerase II third largest
subunit [Thalassiosira pseudonana CCMP1335]
Length = 297
Score = 112 bits (279), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 79/250 (31%), Positives = 124/250 (49%), Gaps = 51/250 (20%)
Query: 77 RVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHR 136
+VE++ + ++F L D ++AN RRI+IAE+PT+AI+ V + N+SV+ DE +AHR
Sbjct: 5 KVEILSMAPHHIQFILSETDTSMANTLRRIMIAEVPTLAIDLVEYSENSSVLNDEYIAHR 64
Query: 137 LGLIPIIVDPRLFEYMSENDTSNEKNTIVFKLHVLCERGGPRLTVKTNELKWLPNGSELP 196
LGL+PI +M+E +C PR V E
Sbjct: 65 LGLVPI-------RFMAEGSLK----------ECVCYDRCPRCCV------------EFE 95
Query: 197 LETKPDSNPSSKPRTYTSFS---SSQDLLPEFSNNPIRPML-------------DITIAR 240
L+ D ++P T + +S+DL+ +N + P I+I +
Sbjct: 96 LDVNFDKVNQTRPDTERDLALTVTSRDLIS--NNMLVSPAHFLNEEEQDESHDEGISIVK 153
Query: 241 LGPGQEIELEAHAVKGIGKTHAKWSPVATAWYRMLPEIVLLEDVED----EDAEKLVKTC 296
LGPGQ ++L+A A GI K HAKW PVA A YR P I + E+ + E ++LV+ C
Sbjct: 154 LGPGQHLKLKAIARMGISKEHAKWCPVAVATYRFWPIITINEEACNMLTLEQKQELVEAC 213
Query: 297 PVNVFDIEDI 306
P + ++++I
Sbjct: 214 PDRILELDEI 223
>gi|66362260|ref|XP_628094.1| RNA polymerase II B3 subunit [Cryptosporidium parvum Iowa II]
gi|46227424|gb|EAK88359.1| RNA polymerase II B3 subunit [Cryptosporidium parvum Iowa II]
Length = 355
Score = 111 bits (278), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 85/304 (27%), Positives = 139/304 (45%), Gaps = 56/304 (18%)
Query: 77 RVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHR 136
+ E+ LT + + F L D ++AN RRI++AE+PT+AI+ V + +NTSV+ DE + HR
Sbjct: 11 KAEITELTPNSIRFTLSNTDLSMANTLRRIILAEIPTLAIDLVTMIDNTSVLHDEFIVHR 70
Query: 137 LGLIPI-IVDPRLFEYMSENDTSNEKN--TIVFKLHVLCERGGPRLTVKTNELKWLPNGS 193
+GLIP+ + R F + + N ++ + L V CE G R V +++ + +
Sbjct: 71 MGLIPLDSTNIRDFNFKDRCECQERCNKCSVEYLLDVTCEGGATR-NVTHYDIQPVATST 129
Query: 194 ELPLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPMLDITIARLGPGQEIELEAHA 253
+P+ P K D + +N I IA+LGPGQ I + A
Sbjct: 130 LVPM-------PVPK---------KDDSVDGMNNG-------ILIAKLGPGQRIAMRMTA 166
Query: 254 VKGIGKTHAKWSPVATAWYRMLPEI----VLLEDVEDEDAEKLVKTCPVNVFDIEDIGSG 309
KGIGK HAKW PV+ A + ++ L ++ + +++V CP +VF + S
Sbjct: 167 CKGIGKFHAKWIPVSVATFTNEADVRINYSLSSNLTLKQRKEIVNCCPKDVFALGGSTSK 226
Query: 310 KKRAT-------------------VAQPRACTLCRECLRCGEEWEK------RVSIRRVK 344
+ A V ++C C EC+ + + RV + K
Sbjct: 227 TEYALNKNSAYSTKTKTEELPDLEVVSSKSCIFCNECVNLTKNYGYINPVLIRVDTKPDK 286
Query: 345 DHFI 348
HF+
Sbjct: 287 FHFL 290
>gi|401404694|ref|XP_003881797.1| hypothetical protein NCLIV_015560 [Neospora caninum Liverpool]
gi|325116211|emb|CBZ51764.1| hypothetical protein NCLIV_015560 [Neospora caninum Liverpool]
Length = 514
Score = 111 bits (278), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 87/294 (29%), Positives = 135/294 (45%), Gaps = 37/294 (12%)
Query: 51 NVMYSGAYASMGVDNSLQLDHFCNNFRVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAE 110
+ A MG+ + + + V ++ ++F L D +IANA RR++IAE
Sbjct: 137 GAAFPSGGAFMGLTGTGAVGSMAYEPSIVVKEVSPSKVQFLLENCDVSIANALRRVMIAE 196
Query: 111 LPTMAIEKVLIANNTSVIQDEVLAHRLGLIPIIVDPRLFEYMSENDTSNEKN----TIVF 166
+PT+AI+ V + NTSV+ DE ++HRLGL+PI R+ E+++ D + ++ +
Sbjct: 197 VPTLAIDLVTVYENTSVLHDEYISHRLGLLPID-STRVAEFVNREDCDCADHCPRCSVQY 255
Query: 167 KLHVLCERGGPRLT----VKTNELKW---LPNGSELPLETKPDSNPSSKPRTYTSFSSSQ 219
L V+C+ +T V N + P G L L P PR
Sbjct: 256 ALDVVCQNDSLLVTHRDIVADNAGRGTALAPGGGFLDLSCP---MPVPLPREMQQ----- 307
Query: 220 DLLPEFSNNPIRPMLDITIARLGPGQEIELEAHAVKGIGKTHAKWSPVATAWYRMLPEIV 279
+ M I I +L Q + + A+KG+GK HAKWSPVATA Y+ PEI
Sbjct: 308 -----------KEMDGIPIVKLRRNQSVNMRMTAIKGMGKLHAKWSPVATASYKFEPEIS 356
Query: 280 LLED----VEDEDAEKLVKTCPVNVFD-IEDIGSGKKRATVAQPRA-CTLCREC 327
ED E ++ +CP +VF I+D +G + + C C +C
Sbjct: 357 FEEDQLARAPAEVKRQIAASCPRDVFAFIDDTATGGNGMLRVENKINCIYCDQC 410
>gi|321445177|gb|EFX60618.1| hypothetical protein DAPPUDRAFT_71222 [Daphnia pulex]
Length = 129
Score = 111 bits (277), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 50/87 (57%), Positives = 67/87 (77%)
Query: 62 GVDNSLQLDHFCNNFRVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLI 121
G D+S + F ++ ++R+ +MEFDLIG+D AI NAFRRIL++++PTMA +KV +
Sbjct: 43 GFDDSWSFEKFKKRLKINIVRMENMEMEFDLIGVDPAIPNAFRRILLSDIPTMAFDKVFM 102
Query: 122 ANNTSVIQDEVLAHRLGLIPIIVDPRL 148
NNTS+IQDEVLAHRLGLIP+ DPRL
Sbjct: 103 FNNTSIIQDEVLAHRLGLIPLKADPRL 129
>gi|67624207|ref|XP_668386.1| conjugation stage-specific protein [Cryptosporidium hominis TU502]
gi|54659581|gb|EAL38151.1| conjugation stage-specific protein [Cryptosporidium hominis]
Length = 355
Score = 111 bits (277), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 85/304 (27%), Positives = 139/304 (45%), Gaps = 56/304 (18%)
Query: 77 RVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHR 136
+ E+ LT + + F L D ++AN RRI++AE+PT+AI+ V + +NTSV+ DE + HR
Sbjct: 11 KAEITELTPNSIRFTLSNTDLSMANTLRRIILAEIPTLAIDLVTMIDNTSVLHDEFIVHR 70
Query: 137 LGLIPI-IVDPRLFEYMSENDTSNEKN--TIVFKLHVLCERGGPRLTVKTNELKWLPNGS 193
+GLIP+ + R F + + N ++ + L V CE G R V +++ + +
Sbjct: 71 MGLIPLDSTNIRDFNFKDRCECQERCNKCSVEYLLDVTCEGGATR-NVTHYDIQPVATST 129
Query: 194 ELPLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPMLDITIARLGPGQEIELEAHA 253
+P+ P K D + +N I IA+LGPGQ I + A
Sbjct: 130 LVPM-------PVPK---------KDDSVDGMNNG-------ILIAKLGPGQRIAMRMTA 166
Query: 254 VKGIGKTHAKWSPVATAWYRMLPEI----VLLEDVEDEDAEKLVKTCPVNVFDIEDIGSG 309
KGIGK HAKW PV+ A + ++ L ++ + +++V CP +VF + S
Sbjct: 167 CKGIGKFHAKWIPVSVATFTNEADVRINYSLSSNLTLKQRKEIVNCCPKDVFALGGNTSK 226
Query: 310 KKRAT-------------------VAQPRACTLCRECLRCGEEWEK------RVSIRRVK 344
+ A V ++C C EC+ + + RV + K
Sbjct: 227 TEYALNKNSTYSTKTKTEELPDLEVVSSKSCIFCNECVNLTKNYGYINPALIRVDTKPDK 286
Query: 345 DHFI 348
HF+
Sbjct: 287 FHFL 290
>gi|403220422|dbj|BAM38555.1| DNA-directed RNA polymerase II [Theileria orientalis strain
Shintoku]
Length = 354
Score = 110 bits (274), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 92/299 (30%), Positives = 140/299 (46%), Gaps = 50/299 (16%)
Query: 78 VEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRL 137
+E++ L KD M+F L+ D + ANA RRI+++E+P++AIE V + NTSV+ DE ++HRL
Sbjct: 12 IEIVDLRKDRMDFILLNSDVSTANAIRRIILSEIPSLAIEIVTVLENTSVLHDEYISHRL 71
Query: 138 GLIPIIVDPRL---FEYMSENDTSNE--KNTIVFKLHVLCERGGPRLTVKTNELKWLPNG 192
GL+PI D L FE+ + +++ + T+ + L V C R+ +P+
Sbjct: 72 GLLPI--DSTLASEFEFRDKCQCTDKCARCTVDYTLDVSCNDSDSRVVT---HFDIVPDE 126
Query: 193 SELPLETKPDSNPSSKPRT-YTSFSSSQDLLPEFSNNPIRPMLDITIARLGPGQEIELEA 251
S+ + P PR T+F+ D +P I +L G I ++
Sbjct: 127 SQ-SQSIYGKNLPMPIPRADATNFNGGTDGIP--------------IVKLKRGHSINMKL 171
Query: 252 HAVKGIGKTHAKWSPVATAWYRMLPEI----VLLEDVEDEDAEKLVKTCPVNVF------ 301
A KG+GK HAKW V Y+M P ++E + E+ + +CP VF
Sbjct: 172 TATKGLGKFHAKWI-VGNVNYKMEPRFSFNSSIMEQLTSEEKAGIAASCPRGVFKYTGVR 230
Query: 302 -DIE-DIGSGKKR-------ATVAQPRACTLCRECLR-CGEEWEK---RVSIRRVKDHF 347
D+E +GS K VA C C EC+ C E K R+ K HF
Sbjct: 231 SDMEPGLGSSDKSFKLNVGGLQVANKLNCIYCDECINYCRELGHKDLIRIQPDESKFHF 289
>gi|412990464|emb|CCO19782.1| DNA-directed RNA polymerase II subunit RPB3 [Bathycoccus prasinos]
Length = 298
Score = 110 bits (274), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 92/278 (33%), Positives = 135/278 (48%), Gaps = 47/278 (16%)
Query: 84 TKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRLGLIPII 143
T D ++F L ++ANA RR+ IAE+PT+AI+ V I N+SV+ DE +AHRLGL+P++
Sbjct: 13 TSDFVKFTLSNTCLSVANAVRRVAIAEVPTVAIDLVEIVENSSVLCDEFIAHRLGLVPLV 72
Query: 144 VDPRL-----FEYMSENDTSNEKNTIVFKLHVLCERGGPRLTVKTNELKWLPNGSELPLE 198
D EY+ E++ K + L V C L V TN L + LP+
Sbjct: 73 SDSASDYMLPSEYVGEDEA---KINVHLNLAVKCS-SDHTLDVTTNHL-ICADAKFLPVN 127
Query: 199 TKP---DSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPMLDITIARLGPGQEIELEAHAVK 255
P DSN P + I +L QE+ ++ A K
Sbjct: 128 FHPIDSDSNKQEPP-------------------------GVLIVKLRKNQELVVKCIARK 162
Query: 256 GIGKTHAKWSPVATAWYRMLPEIVLLEDVEDE--DAEK--LVKTCPVNVFDIEDIGSGKK 311
GIGK HAKWSPVATA Y+ PE+ L E++ ++ D EK LV +CP+ + + K
Sbjct: 163 GIGKDHAKWSPVATAVYKCEPELYLNEELTNKLTDREKLELVNSCPIPIL---RLNQHTK 219
Query: 312 RATVAQPRACTLCRECLRCGEEWEKR--VSIRRVKDHF 347
+ + + EC++ EE+ K V I+ +D F
Sbjct: 220 SLEIERNDSYAYDDECIKKAEEFGKGKIVEIKAKEDTF 257
>gi|409044983|gb|EKM54464.1| hypothetical protein PHACADRAFT_258319 [Phanerochaete carnosa
HHB-10118-sp]
Length = 399
Score = 110 bits (274), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 75/208 (36%), Positives = 110/208 (52%), Gaps = 21/208 (10%)
Query: 75 NFRVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLA 134
+ V + L KD + F L +D A+AN+FRRI++A++PT+AI+ V I +NTSV+ DE ++
Sbjct: 6 DISVRIRDLKKDRVNFVLENVDMALANSFRRIMMADIPTVAIDIVEIDSNTSVLPDEFIS 65
Query: 135 HRLGLIPIIVD--PRLFEYMSENDTSN--EKNTIVFKLHVLCERGGPRLTVKTNELKW-- 188
HRLG+IP++ Y E + + +V +L++ CE G L V +N L++
Sbjct: 66 HRLGMIPLVSTNCDEAMRYTRECTCESFCQFCAVVLQLNIRCETAGEHLDVTSNHLEFVN 125
Query: 189 LPNGSELPLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPMLDITIARLGPGQEIE 248
L N + P E S +P + P N+P P + IAR+G GQEI
Sbjct: 126 LSNNYDDPGEEI-----SKRPENFG--------YPVGKNDPNVP--PVLIARIGKGQEIR 170
Query: 249 LEAHAVKGIGKTHAKWSPVATAWYRMLP 276
A KGI K HAKWSP + Y P
Sbjct: 171 ARCIAKKGIAKEHAKWSPCSAVAYEYDP 198
>gi|349592821|gb|AEP96149.1| RNA polymerase I polypeptide C, partial [Euplectes orix]
Length = 165
Score = 109 bits (273), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 64/129 (49%), Positives = 82/129 (63%), Gaps = 4/129 (3%)
Query: 220 DLLPEFSNNPIRPMLDITIARLGPGQEIELEAHAVKGIGKTHAKWSPVATAWYRMLPEIV 279
DL P+ P+ DI IA L PGQEI++ H VKGIGK HAK+SPVATA YR+LP+I
Sbjct: 2 DLFPDADFRPVHD--DILIALLRPGQEIDVLMHCVKGIGKDHAKFSPVATASYRLLPDIT 59
Query: 280 LLEDVEDEDAEKLVKTCPVNVFDIEDIGSGKKRATVAQPRACTLCRECLRCGEEWEKRVS 339
LL+ +EDE AE L K V +I++I +GKK A VA R T RE R E + V
Sbjct: 60 LLQPIEDEAAETLQKCFSPGVIEIQNI-NGKKVARVANARLDTFSREVFR-HEGLKNLVR 117
Query: 340 IRRVKDHFI 348
+ RV++H+I
Sbjct: 118 LARVRNHYI 126
>gi|320101538|ref|YP_004177130.1| DNA-directed RNA polymerase subunit D [Desulfurococcus mucosus DSM
2162]
gi|319753890|gb|ADV65648.1| DNA-directed RNA polymerase, subunit D [Desulfurococcus mucosus DSM
2162]
Length = 280
Score = 109 bits (272), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 82/253 (32%), Positives = 115/253 (45%), Gaps = 33/253 (13%)
Query: 76 FRVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAH 135
++++I T ++ L GI + N+ RR +I+E+PTMA++ V I N+SV DE +AH
Sbjct: 1 MQLDIIEKTPYTIKLHLKGIPLHVVNSLRRTIISEVPTMAVDYVAITENSSVFYDEYIAH 60
Query: 136 RLGLIPIIVDPRLFEYMSENDTSNEKNTIVFKLHVLCERGGPRLTVKTNELKWLPNGSEL 195
RLGLIP+ D L +Y + + VF RL K E L SE+
Sbjct: 61 RLGLIPLKSDEALHKYKPPEECAEAGEKGVFSQDCF---ATLRLEAKGPEDGVLTIYSEM 117
Query: 196 PLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPMLDITIARLGPGQEIELEAHAVK 255
LE SS D+ P + P + RL Q I LEA+A
Sbjct: 118 -LE-----------------SSDPDVTPVYGKVP--------VVRLTRNQSIRLEAYARL 151
Query: 256 GIGKTHAKWSPVATAWYRMLPEIVL-LEDVEDEDAEKLVKTCPVNVFDIEDIGSGKKRAT 314
G GK HAKWSPV+ A ++ +P I + E + + TCP VF+ K
Sbjct: 152 GRGKEHAKWSPVSVATHKYIPVITVNAEKCQGTKCSRCANTCPKGVFEASGDAIRVKEDR 211
Query: 315 VAQPRACTLCREC 327
V + CT CR C
Sbjct: 212 VLE---CTFCRLC 221
>gi|162606468|ref|XP_001713264.1| DNA-directed RNA polymerase II [Guillardia theta]
gi|12580730|emb|CAC27048.1| DNA-directed RNA polymerase II [Guillardia theta]
Length = 299
Score = 108 bits (271), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 68/180 (37%), Positives = 99/180 (55%), Gaps = 26/180 (14%)
Query: 100 ANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRLGLIPIIV-DPRLFEYMSENDTS 158
AN+ RRI++ E+PT+AI+KV I NTS +DE +AHRLGLIPI + L +Y E D
Sbjct: 23 ANSIRRIMMNEIPTLAIDKVYIEKNTSSFKDEFIAHRLGLIPIFSENADLIKYSRECDCE 82
Query: 159 N--EKNTIVFKLHVLCERGGPRLTVKTNELKWLPNGSELPLETKPDSNPSSKPRTYTSFS 216
N EK +I+F L V T+ ++ +K + + PL+T N S R Y ++
Sbjct: 83 NECEKCSILFTLDV--HANETEKTITSSMVKC--STACYPLKTFFIINNSGNSRNYDDYA 138
Query: 217 SSQDLLPEFSNNPIRPMLDITIARLGPGQEIELEAHAVKGIGKTHAKWSPVATAWYRMLP 276
I IA+L PGQ I+L+A+ KGIGK H+KW+P+++ +R P
Sbjct: 139 -------------------IIIAKLNPGQNIKLKAYVKKGIGKEHSKWNPISSIKFRFYP 179
>gi|145506343|ref|XP_001439135.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124406313|emb|CAK71738.1| unnamed protein product [Paramecium tetraurelia]
Length = 297
Score = 108 bits (271), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 82/277 (29%), Positives = 122/277 (44%), Gaps = 65/277 (23%)
Query: 77 RVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHR 136
R+E++ L+ + +F G D +IANA RR++IAE+P MAI V I NTS + DE LA R
Sbjct: 13 RIEILELSDEKCKFSFEG-DLSIANAIRRVMIAEVPVMAIHFVDIIENTSPLSDEFLAQR 71
Query: 137 LGLIPIIVDPRLFEYMSENDTSNEKNTIVFKLHVLCERGGPRLTVKTNELKWLPNGSELP 196
L I + + ++K +VF L N ++ P
Sbjct: 72 LAKCMI-------GKLMQIPLDDQKTKVVFTLR-------------------QKNLNDAP 105
Query: 197 LETKPDSNPSSKPRTYTSFSSSQDLLPEFSN---NPIRPM----------LDITIARLGP 243
LE +SQ L PEF IRP+ + I I RLG
Sbjct: 106 LEI-----------------TSQHLEPEFGQVGEMAIRPVRMFSPINGKEVGIPITRLGK 148
Query: 244 GQEIELEAHAVKGIGKTHAKWSPVATAWYRMLPEIVL----LEDVEDEDAEKLVKTCPVN 299
Q + + HA+KG GK HAKW+P+ A +R E+ + + + + + +CP+N
Sbjct: 149 NQSVHVRCHALKGFGKMHAKWTPINIATFRHEAELNFDHSQTQSLSLFEKQSIRDSCPMN 208
Query: 300 VFDIEDIGSGKKRATVAQPRACTLCRECLRCGEEWEK 336
VF ++ + V C C EC+RC E +K
Sbjct: 209 VFAMD----ANQDLIVNAIEKCVFCEECIRCAESMKK 241
>gi|209881574|ref|XP_002142225.1| DNA-directed RNA polymerase II subunit RPB3 [Cryptosporidium muris
RN66]
gi|209557831|gb|EEA07876.1| DNA-directed RNA polymerase II subunit RPB3, putative
[Cryptosporidium muris RN66]
Length = 348
Score = 108 bits (271), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 90/273 (32%), Positives = 131/273 (47%), Gaps = 48/273 (17%)
Query: 78 VEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRL 137
+E+ + ++F L D ++ANA RRI++AE+PT+AI+ V I +NTSV+ DE + HRL
Sbjct: 11 IEITEFSPSVIKFILSNTDVSMANALRRIMLAEIPTLAIDLVTIIDNTSVLHDEFIVHRL 70
Query: 138 GLIPIIVDPRLFEYMSENDTSN-----EKNTIVFKLHVLCERGGPRLTVKTNELKWLPNG 192
GL+PI D R + D K ++ + L + CE GP TV+ + L
Sbjct: 71 GLLPI--DSRQIRDFNFKDRCGCQERCNKCSVDYTLDLKCE--GP--TVR--NVTHLDIY 122
Query: 193 SELPLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPMLDITIARLGPGQEIELEAH 252
S LP+ P P + T NN I IA+LGPGQ +
Sbjct: 123 STLPVPNIPLPVPRKEDVTD-------------PNNE-----GILIAKLGPGQSLTARMT 164
Query: 253 AVKGIGKTHAKWSPVATAWYRMLPEIVL----LEDVEDEDAEKLVKTCPVNVFDI----E 304
A KGIGK HAKW PVATA + +I + + +V + ++V +CP NVF +
Sbjct: 165 ATKGIGKFHAKWIPVATATFTNEADIRINQSSMTNVSLKHRREIVNSCPKNVFGLSASKS 224
Query: 305 DIGSGKK---RAT------VAQPRACTLCRECL 328
+ G K ++T V C C EC+
Sbjct: 225 EFGMFDKPVEKSTNIPDIEVLNSSDCIFCNECV 257
>gi|326433417|gb|EGD78987.1| DNA-directed RNA polymerase II subunit RPB3 [Salpingoeca sp. ATCC
50818]
Length = 271
Score = 108 bits (270), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 71/215 (33%), Positives = 107/215 (49%), Gaps = 30/215 (13%)
Query: 72 FCNNFRVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDE 131
F + +V ++ LT +++ L D A+AN+FRR +IAE+PT+AI+ V I NT+V+ DE
Sbjct: 4 FNRDPQVRIMSLTDSEIKLQLSNADTALANSFRRSMIAEVPTLAIDDVHIEINTTVLHDE 63
Query: 132 VLAHRLGLIPIIVD-PRLFEYMSE--NDTSNEKNTIVFKLHVLCERGGPRLTVKTNELKW 188
+AHRLGLIP+ + F YM + D + +LHV C R ++ V T L+
Sbjct: 64 FIAHRLGLIPLTSERAAHFNYMRDCTCDAGCPNCVVKLELHVAC-RDAHQMEVTTEHLRS 122
Query: 189 L---PNGSELPLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPMLDITIARLGPGQ 245
P+ S +P+ T + S + I I ++ GQ
Sbjct: 123 TLDGPDTSVVPVATAAERRDQSIQGNH-----------------------IVICKIRQGQ 159
Query: 246 EIELEAHAVKGIGKTHAKWSPVATAWYRMLPEIVL 280
E++L +A KG+GK HAKW P A Y P+ L
Sbjct: 160 ELKLTCYARKGVGKEHAKWIPTAAVAYEYDPDNAL 194
>gi|269860308|ref|XP_002649876.1| DNA-directed RNA polymerases I, II, and III, subunit 3
[Enterocytozoon bieneusi H348]
gi|220066716|gb|EED44189.1| DNA-directed RNA polymerases I, II, and III, subunit 3
[Enterocytozoon bieneusi H348]
Length = 282
Score = 108 bits (269), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 85/276 (30%), Positives = 119/276 (43%), Gaps = 56/276 (20%)
Query: 72 FCNNFRVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDE 131
F N+ V +I+ +EFDLI A++NA RRIL +E+ A V I+ N S+ DE
Sbjct: 29 FVNDLHVRIIKHEGLSLEFDLINSTPALSNALRRILTSEIRWYAFHDVFISQNDSIFPDE 88
Query: 132 VLAHRLGLIPIIVDPRLFEYMSENDTSNEKNTIVFKLHVLCERGGPRLTVKTNELKWLPN 191
LAHR+GLIP+ + S T+ + L V N
Sbjct: 89 YLAHRIGLIPVKLKA-----------SETFQTVDYYLKV-------------------SN 118
Query: 192 GSELPLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPMLDITIARLGPGQEIELEA 251
++ + +S S T F +D+L I +L P I ++
Sbjct: 119 NTKETINVYSNSIVS----TIEIFDIQKDVL---------------ICKLAPKNTISMKL 159
Query: 252 HAVKGIGKTHAKWSPVATAWYRMLPEIVLLEDVEDEDAEKLVKTCPVNVFDIEDIGSGKK 311
+GIGKTH KWSPVA +R+LP I L EDA +L C V +I +
Sbjct: 160 RIAEGIGKTHVKWSPVALCTFRLLPHIKLNRKFTGEDAVRLKNACSQGVIEIVN-----D 214
Query: 312 RATVAQPRACTLCRECLRCGEEWEKRVSIRRVKDHF 347
A V PR T+ RE LR E + V + RV H+
Sbjct: 215 EAFVKNPRLETMSREVLR--EFSDGSVELSRVAGHY 248
>gi|323508505|dbj|BAJ77146.1| cgd1_2710 [Cryptosporidium parvum]
Length = 252
Score = 107 bits (268), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 73/232 (31%), Positives = 118/232 (50%), Gaps = 31/232 (13%)
Query: 77 RVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHR 136
+ E+ LT + + F L D ++AN RRI++AE+PT+AI+ V + +NTSV+ DE + HR
Sbjct: 11 KAEITELTPNSIRFTLSNTDLSMANTLRRIILAEIPTLAIDLVTMIDNTSVLHDEFIVHR 70
Query: 137 LGLIPI-IVDPRLFEYMSENDTSNEKN--TIVFKLHVLCERGGPRLTVKTNELKWLPNGS 193
+GLIP+ + R F + + N ++ + L V CE G R V +++ + +
Sbjct: 71 MGLIPLDSTNIRDFNFKDRCECQERCNKCSVEYLLDVTCEGGATR-NVTHYDIQPVATST 129
Query: 194 ELPLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPMLDITIARLGPGQEIELEAHA 253
+P+ P K D + +N I IA+LGPGQ I + A
Sbjct: 130 LVPM-------PVPK---------KDDSVDGMNNG-------ILIAKLGPGQRIAMRMTA 166
Query: 254 VKGIGKTHAKWSPVATAWYRMLPEI----VLLEDVEDEDAEKLVKTCPVNVF 301
KGIGK HAKW PV+ A + ++ L ++ + +++V CP +VF
Sbjct: 167 CKGIGKFHAKWIPVSVATFTNEADVRINYSLSSNLTLKQRKEIVNCCPKDVF 218
>gi|296243119|ref|YP_003650606.1| DNA-directed RNA polymerase subunit D [Thermosphaera aggregans DSM
11486]
gi|296095703|gb|ADG91654.1| DNA-directed RNA polymerase, subunit D [Thermosphaera aggregans DSM
11486]
Length = 277
Score = 107 bits (268), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 76/235 (32%), Positives = 117/235 (49%), Gaps = 34/235 (14%)
Query: 94 GIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRLGLIPIIVDPRLFEYMS 153
GI + N+ RR++I+E+PTMAI+ V N+SV DE LAHRLGLIP+ D L++Y S
Sbjct: 19 GISLHLLNSIRRVIISEVPTMAIDYVAFMENSSVFYDEYLAHRLGLIPLTSDQALWKYKS 78
Query: 154 ENDTSNEKNTIVFKLHVLCERGGPRLTVKTNELKWLPNGSELPLETKPDSNPSSKPRTYT 213
+ +F E RL+++ G + + D+ SS P
Sbjct: 79 PEECREAGEKGLFS-----EDCFVRLSLEG-------EGGDEAVTLYSDNLVSSDP---- 122
Query: 214 SFSSSQDLLPEFSNNPIRPMLDITIARLGPGQEIELEAHAVKGIGKTHAKWSPVATAWYR 273
D+ P F P I +L Q+++LEA+A G GK H KWSPV+ A ++
Sbjct: 123 ------DVKPSFGKIP--------IVKLIKPQKVKLEAYARLGRGKEHIKWSPVSVAAHK 168
Query: 274 MLPEIVLLEDV-EDEDAEKLVKTCPVNVFDIEDIGSGKKRATVAQPRACTLCREC 327
+P I++ + + E+ K V+ CP VF + SG+ + + CT+C+ C
Sbjct: 169 YVPNILVNQRLCRGEECLKCVEACPKEVFAFQ---SGEVKVRSDKLLDCTMCKLC 220
>gi|333987645|ref|YP_004520252.1| DNA-directed RNA polymerase subunit D [Methanobacterium sp. SWAN-1]
gi|333825789|gb|AEG18451.1| DNA-directed RNA polymerase subunit D [Methanobacterium sp. SWAN-1]
Length = 278
Score = 107 bits (268), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 85/257 (33%), Positives = 118/257 (45%), Gaps = 49/257 (19%)
Query: 77 RVEVIRLTKDD--MEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLA 134
+++V KDD + F + G+D NA RRI E+PT+AIE V I N + I DE LA
Sbjct: 13 KMDVTIKNKDDNLLVFTVEGVDVPFINAIRRICTVEVPTLAIEDVDIYKNDAKIFDEALA 72
Query: 135 HRLGLIPIIVDPRLFEYMSENDTSNEKNTIVFKLHVLCERGGPRLTVKTNELKWLPNGSE 194
HRLGLIP+ D SE D CE PR +V S
Sbjct: 73 HRLGLIPLTTDLESMVLASECD---------------CEDHCPRCSV-----------SL 106
Query: 195 LPLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPMLD-ITIARLGPGQEIELEAHA 253
L E P + Y+ SQD P+ ++P D I I +L G+E+ELEA A
Sbjct: 107 LLKEKGPKT-------VYSKDLKSQD--PQ-----LKPTYDTIPIMKLKDGEEVELEAIA 152
Query: 254 VKGIGKTHAKWSPVATAWYRMLPEIVLLEDVED-EDAEKLVKTCPVNVFDIEDIGSGKKR 312
GIG HAKW P Y+ P+I + D E E K V+ CP + + +D +
Sbjct: 153 QLGIGLEHAKWQPTTACAYKYYPKITI--DAEKCESCAKCVEECPRGILEFDD---ENNK 207
Query: 313 ATVAQPRACTLCRECLR 329
+ C++C+ C++
Sbjct: 208 VNILDIENCSMCKTCVK 224
>gi|126465715|ref|YP_001040824.1| DNA-directed RNA polymerase subunit D [Staphylothermus marinus F1]
gi|126014538|gb|ABN69916.1| DNA-directed RNA polymerase, subunit D [Staphylothermus marinus F1]
Length = 280
Score = 107 bits (267), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 76/230 (33%), Positives = 110/230 (47%), Gaps = 33/230 (14%)
Query: 99 IANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRLGLIPIIVDPRLFEYMSENDTS 158
+ N+ RR +IAE+PTMAI+ V+ N+SV DE +AHRLGLIP+ + L +Y S +
Sbjct: 24 VLNSIRRAIIAEVPTMAIDSVVFTMNSSVFYDEYIAHRLGLIPLTSEAALDKYKSPEE-- 81
Query: 159 NEKNTIVFKLHVLCERGGPRLTVKTNELKWLPNGSELPLETKPDSNPSSKPRTYTSFSSS 218
C G R + +L LE K + + +S
Sbjct: 82 -------------CREAGDRGLFTEDCF------VKLDLEGKGEEGKLVTLHSGDLKTSD 122
Query: 219 QDLLPEFSNNPIRPMLDITIARLGPGQEIELEAHAVKGIGKTHAKWSPVATAWYRMLPEI 278
D+ P + N P I LG QEI LEA+A G GK HAKWSPV+ A ++ + +I
Sbjct: 123 PDVKPVYDNIP--------IIVLGKNQEIRLEAYARLGRGKEHAKWSPVSVAAHKYIADI 174
Query: 279 VLLE-DVEDEDAEKLVKTCPVNVFDIEDIGSGKKRATVAQPRACTLCREC 327
+ E E+ +K ++ CP N+ E+ GK + C+LCR C
Sbjct: 175 YIDEKKCLGENCKKCIEVCPRNILSFEN---GKIIVNTNKIFDCSLCRIC 221
>gi|341882009|gb|EGT37944.1| hypothetical protein CAEBREN_16087 [Caenorhabditis brenneri]
gi|341882040|gb|EGT37975.1| hypothetical protein CAEBREN_14407 [Caenorhabditis brenneri]
Length = 281
Score = 107 bits (266), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 72/213 (33%), Positives = 110/213 (51%), Gaps = 22/213 (10%)
Query: 72 FCNNFRVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDE 131
+ N VEV L+ D ++F L D ++AN+ RR+ +AE+PT+AI+ V I NTSV+ DE
Sbjct: 3 YANQPNVEVTELSNDLIKFVLWDTDLSVANSLRRVFMAEVPTIAIDWVQIETNTSVLHDE 62
Query: 132 VLAHRLGLIPIIVDPRL--FEYMSENDTSN--EKNTIVFKLHVLCERGGPRLTVKTNELK 187
+AHR+GLIP I D + +Y E + + ++ +I F L + C + L V T L
Sbjct: 63 FIAHRMGLIPFISDYHVEKMQYTRECECAEFCDECSIPFILQMKC-KDEATLAVTTEHL- 120
Query: 188 WLPNGSELPLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPMLDITIARLGPGQEI 247
+PL+ + + +P + EF N +I I +L GQE+
Sbjct: 121 -------IPLK----DDTTVRPACGKALRERGSAREEFHNRE-----EILIVKLRKGQEL 164
Query: 248 ELEAHAVKGIGKTHAKWSPVATAWYRMLPEIVL 280
L+A+A KG GK HAKW+P + P+ L
Sbjct: 165 NLKAYAKKGFGKEHAKWNPTTGVAFEYDPDNAL 197
>gi|308499659|ref|XP_003112015.1| CRE-RPB-3 protein [Caenorhabditis remanei]
gi|308268496|gb|EFP12449.1| CRE-RPB-3 protein [Caenorhabditis remanei]
Length = 297
Score = 106 bits (265), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 70/217 (32%), Positives = 113/217 (52%), Gaps = 14/217 (6%)
Query: 72 FCNNFRVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDE 131
+ N +EV L+ D M+F L D ++AN+ RR+ +AE+PT+AI+ V I NTSV+ DE
Sbjct: 3 YANQPNIEVTELSNDLMKFVLWDTDLSVANSLRRVFMAEVPTIAIDWVQIETNTSVLHDE 62
Query: 132 VLAHRLGLIPIIVDPRL--FEYMSENDTSN--EKNTIVFKLHVLCERGGPRLTVKTNELK 187
+AHR+GLIP + D + +Y E + + ++ +I F L + C + L V T +L+
Sbjct: 63 FIAHRMGLIPFLSDYHVEKMQYTRECECAEFCDECSIPFILQMKC-KDEATLAVTTADLR 121
Query: 188 WLPNGSELPLETKPDS----NPSSKPRTYTSFSSSQDLLPEFSNNPIRPMLDITIARLGP 243
+ N + + K + + +P + +F N +I I +L
Sbjct: 122 CMNNDTVIVCSKKVVTILACFQTVRPACGKALRERGTGREDFHNRE-----EILIVKLRK 176
Query: 244 GQEIELEAHAVKGIGKTHAKWSPVATAWYRMLPEIVL 280
GQE+ L+A+A KG GK HAKW+P + P+ L
Sbjct: 177 GQELNLKAYAKKGFGKEHAKWNPTCGVAFEYDPDNAL 213
>gi|308800116|ref|XP_003074839.1| Rpb3 DNA-directed RNA polymerase II subunit 3 (IC) [Ostreococcus
tauri]
gi|119358805|emb|CAL52099.2| Rpb3 DNA-directed RNA polymerase II subunit 3 (IC) [Ostreococcus
tauri]
Length = 301
Score = 106 bits (265), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 85/284 (29%), Positives = 135/284 (47%), Gaps = 47/284 (16%)
Query: 77 RVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHR 136
V V RL + F L G+D ++ANA RR++IA++PT+AI+ V + N+SV+ DE LAHR
Sbjct: 10 HVSVTRLEDQSITFSLKGVDVSLANALRRVMIADVPTLAIDLVEVVENSSVLCDEFLAHR 69
Query: 137 LGLIPI-------IVDPRLFEYMSENDTSNEKNTIVFKLHVLCERGGPRLTVKTNELKWL 189
LGLIP+ + P +EYM E+D++ + + +L+V C
Sbjct: 70 LGLIPLSSKKVSELFKP--YEYMGEDDSATD---VHLELNVRC---------------LT 109
Query: 190 PNGSELPLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPMLDITIARLGPGQEIEL 249
++ E + KP T+ S + +P I I +L Q++ L
Sbjct: 110 EQAMDVTSEDMVSYDERVKPITFQGTVS----------DAAKPG-GILIVKLRNKQQLLL 158
Query: 250 EAHAVKGIGKTHAKWSPVATAWYRMLPEI----VLLEDVEDEDAEKLVKTCPVNVFDIED 305
+ A KG GK HAKWSPVATA ++ P + LL+ + D +V++ P +F +
Sbjct: 159 KCIARKGTGKDHAKWSPVATAVFKHDPVVHVNQELLKTLSGSDKRAIVESDPSQMFKYD- 217
Query: 306 IGSGKKRATVAQPRACTLCRECLRCGEEWEKR--VSIRRVKDHF 347
+ ++ +CT E ++ E K + IR D F
Sbjct: 218 --ADLDTISLTSTGSCTFDGEIVKKVNEMGKHGLIDIRPCFDSF 259
>gi|384245015|gb|EIE18511.1| DNA-directed RNA polymerase II, 36 kDa polypeptide [Coccomyxa
subellipsoidea C-169]
Length = 303
Score = 106 bits (264), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 94/282 (33%), Positives = 135/282 (47%), Gaps = 44/282 (15%)
Query: 81 IRLTKDDM-EFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRLGL 139
IR +DD EF L D ++ANA RRI++ E+PT+AI+ V I NT+V+ DE +AHRLGL
Sbjct: 15 IRDLRDDFCEFVLSDTDPSVANALRRIMLVEVPTIAIDLVEIEENTTVLNDEFIAHRLGL 74
Query: 140 IPIIVDP-----RLFEYMSENDTSNEKNTIVFKLHVLCERGGPRLTVKTNELKWLPNGSE 194
IP++ +FE E D + + T L+V C + V +N+L+ N
Sbjct: 75 IPLVSSAVGGMKGVFEDAGEADFLDVEMT----LNVKC-TSEDTMEVTSNDLQLDAN--- 126
Query: 195 LPLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPMLDITIARLGPGQEIELEAHAV 254
+P +P Y PE I + ++ QE+ L+A A
Sbjct: 127 ---------HPDVRPVGYVPGGYD----PENRG--------ILLVKMRKNQELRLKAIAR 165
Query: 255 KGIGKTHAKWSPVATAWYRMLPEI----VLLEDVEDEDAEKLVKTCPVNVFDIEDIGSGK 310
KGIGK HAKW PVAT ++ +PEI L++ + +E E VK P VF +I
Sbjct: 166 KGIGKDHAKWIPVATVSFQYMPEITINRALMDTLTEEQKEDWVKATPNPVFRYNNITKQV 225
Query: 311 KRATVAQPRACTLCRECLRCGEEWEK--RVSIRRVKDHFICK 350
+ V Q R E EE K V+I+ +D FI +
Sbjct: 226 ELDDVEQYRYDG---EAEAKAEELGKPGLVTIKERQDMFIFR 264
>gi|397615411|gb|EJK63419.1| hypothetical protein THAOC_15929 [Thalassiosira oceanica]
Length = 323
Score = 106 bits (264), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 80/255 (31%), Positives = 120/255 (47%), Gaps = 39/255 (15%)
Query: 77 RVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHR 136
++E+ + ++ F L D ++AN RRI+IAE+PT+AI+ V N+SV+ DE +AHR
Sbjct: 8 KIEIKHIAPHEITFVLSETDTSMANTLRRIMIAEVPTLAIDLVEYHENSSVLNDEYIAHR 67
Query: 137 LGLIPIIVDPRLFEYMSENDTSNEKNTIVFKLHVLCERGGPRLTVKTNELKWLPNGSELP 196
LGLIPI P + V +C PR +V E
Sbjct: 68 LGLIPIRYSPD-----GTLKGGDCHQAFVPHRECVCYDRCPRCSV------------EFD 110
Query: 197 LETKPDSNPSSKP---RTYTSFSSSQDLLPEFSNNPIRPML-------------DITIAR 240
L+ D S+P R +S+DL+ +N + P I+I +
Sbjct: 111 LDVNFDKVNMSRPEQERDLPLTVTSRDLIA--NNVQVSPAHFLNEEEQDNAHDEGISIVK 168
Query: 241 LGPGQEIELEAHAVKGIGKTHAKWSPVATAWYRMLPEIVLLEDVED----EDAEKLVKTC 296
LG GQ + L+A A GI K HAKW PVA A YR PEI + ++ + E ++LV C
Sbjct: 169 LGQGQHLRLKAIARMGISKEHAKWCPVAVATYRFWPEITINQEACNNLTMEQKQELVDAC 228
Query: 297 PVNVFDIEDIGSGKK 311
P + ++++I K
Sbjct: 229 PDRILELDEITGNLK 243
>gi|145342475|ref|XP_001416207.1| DNA-directed RNA polymerase II subunit 3 [Ostreococcus lucimarinus
CCE9901]
gi|144576432|gb|ABO94500.1| DNA-directed RNA polymerase II subunit 3 [Ostreococcus lucimarinus
CCE9901]
Length = 318
Score = 105 bits (263), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 73/208 (35%), Positives = 111/208 (53%), Gaps = 38/208 (18%)
Query: 78 VEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRL 137
V V RL + + FDL G+D ++ANA RR++IA++PT++I+ V + N+SV+ DE LAHRL
Sbjct: 11 VTVARLEDETIIFDLKGVDVSLANALRRLMIADVPTVSIDLVEVIENSSVLCDEFLAHRL 70
Query: 138 GLIPI-------IVDPRLFEYMSENDTSNEKNTIVFKLHVLCERGGPRLTVKTNELKWLP 190
GLIP+ +V P +EY ++DT+ + + +L+V C+ R V +++L
Sbjct: 71 GLIPLDSTKASELVKP--YEYTGDDDTATD---VHLELNVRCQSDQTR-DVTSDDL---- 120
Query: 191 NGSELPLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPMLDITIARLGPGQEIELE 250
+ P S T + S +L IA+L Q++ L+
Sbjct: 121 ------ISHDERVKPVSFGGTGGGSAKSGGIL---------------IAKLRKNQQLSLK 159
Query: 251 AHAVKGIGKTHAKWSPVATAWYRMLPEI 278
A KG GK HAKWSPVATA ++ P I
Sbjct: 160 CIARKGTGKDHAKWSPVATAVFKYTPLI 187
>gi|86560996|ref|NP_492361.2| Protein RPB-3 [Caenorhabditis elegans]
gi|74834695|emb|CAB02268.2| Protein RPB-3 [Caenorhabditis elegans]
Length = 282
Score = 105 bits (262), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 73/213 (34%), Positives = 112/213 (52%), Gaps = 21/213 (9%)
Query: 72 FCNNFRVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDE 131
+ N +EV LT D ++F L D ++AN+ RR+ +AE+PT+AI+ V I NTSV+ DE
Sbjct: 3 YANQPNIEVTELTNDIIKFVLWDTDLSVANSLRRVFMAEVPTIAIDWVQIETNTSVLHDE 62
Query: 132 VLAHRLGLIPIIVDPRL--FEYMSENDTSN--EKNTIVFKLHVLCERGGPRLTVKTNELK 187
+AHR+GLIP I D + +Y + + + ++ +I F L + C + L V T L
Sbjct: 63 FIAHRMGLIPFISDYHVEKMQYTRDCECAEFCDECSIPFILQMKC-KDEATLAVTTEHLM 121
Query: 188 WLPNGSELPLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPMLDITIARLGPGQEI 247
+ N L +P + + R S++D EF N +I I +L GQE+
Sbjct: 122 PMHN---LDTTVRPACGKALRER-----GSTRD---EFHNRE-----EILIVKLRKGQEL 165
Query: 248 ELEAHAVKGIGKTHAKWSPVATAWYRMLPEIVL 280
L+A+ KG GK HAKW+P + P+ L
Sbjct: 166 NLKAYVKKGFGKEHAKWNPTCGVAFEYDPDNAL 198
>gi|452821367|gb|EME28398.1| DNA-directed RNA polymerase II subunit C [Galdieria sulphuraria]
Length = 257
Score = 105 bits (262), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 74/214 (34%), Positives = 111/214 (51%), Gaps = 26/214 (12%)
Query: 72 FCNNFRVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDE 131
F + + R T ++M+F + D ++ANA RR+ IA++PTMAI+ + + NTS + DE
Sbjct: 3 FAKTPTIHINRQTFNEMDFIITDTDTSVANAIRRVAIAQVPTMAIDLIHMQVNTSSLHDE 62
Query: 132 VLAHRLGLIPII---VDPRLFEYMSENDTSNE---KNTIVFKLHVLCERGGPRLTVKTNE 185
+LAHRLGLIP+ VD FEY + ++ ++ F+L V C +TV + +
Sbjct: 63 LLAHRLGLIPLTSHRVDE--FEYTRDCPYCSDHCLHCSVTFELDVQCTEEA--MTVTSQD 118
Query: 186 L-KWLPNGSELPLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPMLDITIARLGPG 244
L + S+L +P FS + P S + I +A+L G
Sbjct: 119 LVNKSAHESQLAASVQP-----------VHFSGEYN--PTLSEE--NGLNGIVLAKLAKG 163
Query: 245 QEIELEAHAVKGIGKTHAKWSPVATAWYRMLPEI 278
Q I+L A A KG+GK HAKWSPV T Y+ P +
Sbjct: 164 QRIQLTAIAKKGVGKEHAKWSPVCTISYQTDPSV 197
>gi|395506007|ref|XP_003757327.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB3 isoform 1
[Sarcophilus harrisii]
Length = 275
Score = 105 bits (262), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 71/213 (33%), Positives = 104/213 (48%), Gaps = 27/213 (12%)
Query: 72 FCNNFRVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDE 131
+ N V + LT ++++F + D A+AN+ RR+ IAE+P +AI+ V I N+SV+ DE
Sbjct: 3 YANQPTVRITELTDENVKFIIENTDLAVANSIRRVFIAEVPIIAIDWVQIDANSSVLHDE 62
Query: 132 VLAHRLGLIPIIVDPRLFEYMSENDTSNE----KNTIVFKLHVLCERGGPRLTVKTNELK 187
+AHRLGLIP+ D + + D + E + ++ F L V C R + +
Sbjct: 63 FIAHRLGLIPLTSDDIVDKLQYSRDCTCEEFCPECSVEFTLDVRCNEDQTRHVTSRDLI- 121
Query: 188 WLPNGSELPLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPMLDITIARLGPGQEI 247
S+ PR S S+D P N DI I +L GQE+
Sbjct: 122 ------------------SNTPRVIPVTSRSRDNDP----NDYVEQDDILIVKLRKGQEL 159
Query: 248 ELEAHAVKGIGKTHAKWSPVATAWYRMLPEIVL 280
L A+A KGIGK HAKW+P A + P+ L
Sbjct: 160 RLRAYAKKGIGKEHAKWNPTAGVAFEYDPDNAL 192
>gi|312137109|ref|YP_004004446.1| RNA polymerase insert [Methanothermus fervidus DSM 2088]
gi|311224828|gb|ADP77684.1| RNA polymerase insert [Methanothermus fervidus DSM 2088]
Length = 264
Score = 105 bits (261), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 78/267 (29%), Positives = 127/267 (47%), Gaps = 51/267 (19%)
Query: 87 DMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRLGLIPIIVDP 146
+++F + G+D + NA RR + E+P +AIE + I NTS + DE+LAHRLGLIP+
Sbjct: 12 EIKFTIDGVDTSFVNALRRASMTEVPKLAIEYIRIVTNTSRMYDEMLAHRLGLIPL---- 67
Query: 147 RLFEYMSENDTSNEK--NTIVFKLHVLCERGGPRLTVKTNELKWLPNGSELPLETKPDSN 204
SNEK ++ C++ + +V K P
Sbjct: 68 ----------RSNEKIVGNLLMPEECDCDKYCAKCSVSFTLKKQGP-------------- 103
Query: 205 PSSKPRTYTSFSSSQDLLPEFSNNPIRPML-DITIARLGPGQEIELEAHAVKGIGKTHAK 263
S DL+P S+ I+P+ +I I +L ++IELEA A G+GK HAK
Sbjct: 104 ---------CVVYSGDLVP--SDPEIKPVYENIPIIKLEEDEKIELEAIAQLGLGKKHAK 152
Query: 264 WSPVATAWYRMLPEIVLLEDVEDEDAEKLVKTCPVNVFDIEDIGSGKKRATVAQPRACTL 323
W P Y+ P+I++ + ++ + ++ CP +V + + K + AC+L
Sbjct: 153 WRPTTACGYKYYPKIIIKDTC--DNCQACIEECPKDV-----LKANKDTIKIENIEACSL 205
Query: 324 CRECLRCGEEWEKRVSIRRVKDHFICK 350
CR C R E + +S++ + + FI K
Sbjct: 206 CRACERICE--NESISVQYIDNKFIFK 230
>gi|297527612|ref|YP_003669636.1| RNA polymerase insert [Staphylothermus hellenicus DSM 12710]
gi|297256528|gb|ADI32737.1| RNA polymerase insert [Staphylothermus hellenicus DSM 12710]
Length = 280
Score = 105 bits (261), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 74/230 (32%), Positives = 110/230 (47%), Gaps = 33/230 (14%)
Query: 99 IANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRLGLIPIIVDPRLFEYMSENDTS 158
+ N+ RR++IAE+PTMAI+ V+ N+SV DE +AHRLGLIP+ + L +Y S +
Sbjct: 24 VLNSIRRVVIAEVPTMAIDSVVFTMNSSVFYDEYIAHRLGLIPLTSEAALDKYKSPEECK 83
Query: 159 NEKNTIVFKLHVLCERGGPRLTVKTNELKWLPNGSELPLETKPDSNPSSKPRTYTSFSSS 218
+ +F +L LE K + + +S
Sbjct: 84 EASDRGLFTEDCFV---------------------KLDLEGKGEEGKLVTLHSGDLKTSD 122
Query: 219 QDLLPEFSNNPIRPMLDITIARLGPGQEIELEAHAVKGIGKTHAKWSPVATAWYRMLPEI 278
D+ P + N P I LG QEI LEA+A G GK HAKWSPV+ A ++ + +I
Sbjct: 123 PDVKPVYDNIP--------IIVLGKNQEIRLEAYARLGRGKEHAKWSPVSIAAHKYIADI 174
Query: 279 VLLE-DVEDEDAEKLVKTCPVNVFDIEDIGSGKKRATVAQPRACTLCREC 327
+ E E+ +K V+ CP N+ ++ GK + C+LCR C
Sbjct: 175 HIDEKKCLGENCKKCVEVCPRNILSFKN---GKITVNRDRIFDCSLCRIC 221
>gi|395645094|ref|ZP_10432954.1| DNA-directed RNA polymerase subunit D [Methanofollis liminatans DSM
4140]
gi|395441834|gb|EJG06591.1| DNA-directed RNA polymerase subunit D [Methanofollis liminatans DSM
4140]
Length = 274
Score = 105 bits (261), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 86/279 (30%), Positives = 123/279 (44%), Gaps = 51/279 (18%)
Query: 76 FRVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAH 135
++E R+ D F L G A AN RR +I E+PT+AIE + I +N+SV+ DE+LAH
Sbjct: 1 MQIEFARIDSDSARFVLSGATPAFANTLRRAMIGEVPTLAIEDLRIYDNSSVLFDEILAH 60
Query: 136 RLGLIPIIVDPRLFEYMSENDTSNEKNTIVFKLHVLCERGGPRLTVKTNELKWLPNGSEL 195
RLGLIPI D L ++ ++ S E G+
Sbjct: 61 RLGLIPIKTD--LTRFVKQDRCSCE-------------------------------GAGC 87
Query: 196 PLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNP-IRPML-DITIARLGPGQEIELEAHA 253
PL + + P S DL+ S++P RP+ DI I +L GQ++ LEA A
Sbjct: 88 PLCSVTFTMSVEGP----GIVYSGDLI---SDDPETRPVHDDIPIVKLFEGQKVVLEARA 140
Query: 254 VKGIGKTHAKWSPVATAWYRMLPEIVLLEDVEDEDAEKLVKTCPVNVFDIEDIGSGKKRA 313
V G HAKW V Y+ P I + E+ + + CP V +++ K R
Sbjct: 141 VLNTGTEHAKWQAVTACGYKTYPVITITENC--DACGMCIDECPRGVLELK---GRKARV 195
Query: 314 TVAQPRACTLC----RECLRCGEEWEKRVSIRRVKDHFI 348
+ C+LC + CL G E +SI FI
Sbjct: 196 VDGKLEECSLCKLCEKACLTTGIGLEPAISIGSDTSRFI 234
>gi|67970900|dbj|BAE01792.1| unnamed protein product [Macaca fascicularis]
Length = 251
Score = 104 bits (260), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 74/218 (33%), Positives = 111/218 (50%), Gaps = 29/218 (13%)
Query: 72 FCNNFRVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDE 131
+ N V + LT ++++F + D A+AN+ RR+ IAE+P +AI+ V I N+SV+ DE
Sbjct: 3 YANQPTVRITELTDENVKFIIENTDLAVANSIRRVFIAEVPIIAIDWVQIDANSSVLHDE 62
Query: 132 VLAHRLGLIPIIVDPRLFEYMSENDTSNE----KNTIVFKLHVLCERGGPRLTVKTNELK 187
+AHRLGLIP+I D + + D + E + ++ F L V C R V + +L
Sbjct: 63 FIAHRLGLIPLISDDIVDKLQYSRDCTCEEFCPECSVEFTLDVRCNEDQTR-HVTSRDL- 120
Query: 188 WLPNGSE-LPLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPMLDITIARLGPGQE 246
+PN +P+ ++ N + P Y QD DI I +L GQE
Sbjct: 121 -IPNSPRVIPVTSR---NRDNDPNDYV----EQD--------------DILIVKLRKGQE 158
Query: 247 IELEAHAVKGIGKTHAKWSPVATAWYRMLPEIVLLEDV 284
+ L A+A KG GK HAKW+P A + P+ L V
Sbjct: 159 LRLRAYAKKGFGKEHAKWNPTAGVAFEYDPDNALRHTV 196
>gi|14702171|ref|NP_116558.1| DNA-directed RNA polymerase II subunit RPB3 [Homo sapiens]
gi|384475805|ref|NP_001245048.1| DNA-directed RNA polymerase II subunit RPB3 [Macaca mulatta]
gi|114662810|ref|XP_001148305.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB3 isoform 1
[Pan troglodytes]
gi|296231192|ref|XP_002761051.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB3 [Callithrix
jacchus]
gi|297698834|ref|XP_002826511.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB3 [Pongo
abelii]
gi|397506549|ref|XP_003823789.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB3 [Pan
paniscus]
gi|402908526|ref|XP_003916990.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB3 [Papio
anubis]
gi|403306002|ref|XP_003943535.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB3 [Saimiri
boliviensis boliviensis]
gi|426382315|ref|XP_004057753.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB3 [Gorilla
gorilla gorilla]
gi|3915850|sp|P19387.2|RPB3_HUMAN RecName: Full=DNA-directed RNA polymerase II subunit RPB3;
Short=RNA polymerase II subunit 3; Short=RNA polymerase
II subunit B3; AltName: Full=DNA-directed RNA polymerase
II 33 kDa polypeptide; Short=RPB33; AltName:
Full=DNA-directed RNA polymerase II subunit C; AltName:
Full=RPB31
gi|2266931|gb|AAC14355.1| RNA polymerase II subunit hRPB33 [Homo sapiens]
gi|3252823|gb|AAC24309.1| RNA polymerase II subunit hRPB33 [Homo sapiens]
gi|12653281|gb|AAH00409.1| Polymerase (RNA) II (DNA directed) polypeptide C, 33kDa [Homo
sapiens]
gi|13111973|gb|AAH03159.1| Polymerase (RNA) II (DNA directed) polypeptide C, 33kDa [Homo
sapiens]
gi|20380436|gb|AAH28157.1| Polymerase (RNA) II (DNA directed) polypeptide C, 33kDa [Homo
sapiens]
gi|49457035|emb|CAG46838.1| POLR2C [Homo sapiens]
gi|60823189|gb|AAX36635.1| polymerase II polypeptide C [synthetic construct]
gi|90079489|dbj|BAE89424.1| unnamed protein product [Macaca fascicularis]
gi|119603332|gb|EAW82926.1| hCG2025883, isoform CRA_b [Homo sapiens]
gi|119603333|gb|EAW82927.1| hCG2025883, isoform CRA_b [Homo sapiens]
gi|119603335|gb|EAW82929.1| hCG2025883, isoform CRA_b [Homo sapiens]
gi|119603336|gb|EAW82930.1| hCG2025883, isoform CRA_b [Homo sapiens]
gi|123981016|gb|ABM82337.1| polymerase (RNA) II (DNA directed) polypeptide C, 33kDa [synthetic
construct]
gi|123995821|gb|ABM85512.1| polymerase (RNA) II (DNA directed) polypeptide C, 33kDa [synthetic
construct]
gi|157928942|gb|ABW03756.1| polymerase (RNA) II (DNA directed) polypeptide C, 33kDa [synthetic
construct]
gi|158259685|dbj|BAF85801.1| unnamed protein product [Homo sapiens]
gi|208967078|dbj|BAG73553.1| polymerase (RNA) II (DNA directed) polypeptide C [synthetic
construct]
gi|355710235|gb|EHH31699.1| DNA-directed RNA polymerase II subunit RPB3 [Macaca mulatta]
gi|355756811|gb|EHH60419.1| DNA-directed RNA polymerase II subunit RPB3 [Macaca fascicularis]
gi|383419311|gb|AFH32869.1| DNA-directed RNA polymerase II subunit RPB3 [Macaca mulatta]
gi|384947770|gb|AFI37490.1| DNA-directed RNA polymerase II subunit RPB3 [Macaca mulatta]
gi|410206970|gb|JAA00704.1| polymerase (RNA) II (DNA directed) polypeptide C, 33kDa [Pan
troglodytes]
gi|410264222|gb|JAA20077.1| polymerase (RNA) II (DNA directed) polypeptide C, 33kDa [Pan
troglodytes]
gi|410307460|gb|JAA32330.1| polymerase (RNA) II (DNA directed) polypeptide C, 33kDa [Pan
troglodytes]
gi|410331907|gb|JAA34900.1| polymerase (RNA) II (DNA directed) polypeptide C, 33kDa [Pan
troglodytes]
Length = 275
Score = 104 bits (260), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 70/213 (32%), Positives = 104/213 (48%), Gaps = 27/213 (12%)
Query: 72 FCNNFRVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDE 131
+ N V + LT ++++F + D A+AN+ RR+ IAE+P +AI+ V I N+SV+ DE
Sbjct: 3 YANQPTVRITELTDENVKFIIENTDLAVANSIRRVFIAEVPIIAIDWVQIDANSSVLHDE 62
Query: 132 VLAHRLGLIPIIVDPRLFEYMSENDTSNEKN----TIVFKLHVLCERGGPRLTVKTNELK 187
+AHRLGLIP+I D + + D + E+ ++ F L V C R + +
Sbjct: 63 FIAHRLGLIPLISDDIVDKLQYSRDCTCEEFCPECSVEFTLDVRCNEDQTRHVTSRDLI- 121
Query: 188 WLPNGSELPLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPMLDITIARLGPGQEI 247
S+ PR S ++D P N DI I +L GQE+
Sbjct: 122 ------------------SNSPRVIPVTSRNRDNDP----NDYVEQDDILIVKLRKGQEL 159
Query: 248 ELEAHAVKGIGKTHAKWSPVATAWYRMLPEIVL 280
L A+A KG GK HAKW+P A + P+ L
Sbjct: 160 RLRAYAKKGFGKEHAKWNPTAGVAFEYDPDNAL 192
>gi|337497|gb|AAA36586.1| RNA polymerase subunit hRPB 33 [Homo sapiens]
gi|2920709|emb|CAA11842.1| RNA polymerase II subunit [Homo sapiens]
gi|2920711|emb|CAA11843.1| RNA polymerase subunit [Homo sapiens]
Length = 275
Score = 104 bits (260), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 70/213 (32%), Positives = 104/213 (48%), Gaps = 27/213 (12%)
Query: 72 FCNNFRVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDE 131
+ N V + LT ++++F + D A+AN+ RR+ IAE+P +AI+ V I N+SV+ DE
Sbjct: 3 YANQPTVRITELTDENVKFIIENTDLAVANSIRRVFIAEVPIIAIDWVQIDANSSVLHDE 62
Query: 132 VLAHRLGLIPIIVDPRLFEYMSENDTSNEKN----TIVFKLHVLCERGGPRLTVKTNELK 187
+AHRLGLIP+I D + + D + E+ ++ F L V C R + +
Sbjct: 63 FIAHRLGLIPLISDDIVDKLQYSRDCTCEEFCPECSVEFTLDVRCNEDQTRHVTSRDLI- 121
Query: 188 WLPNGSELPLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPMLDITIARLGPGQEI 247
S+ PR S ++D P N DI I +L GQE+
Sbjct: 122 ------------------SNSPRVIPVTSRNRDNDP----NDYVEQDDILIVKLRKGQEL 159
Query: 248 ELEAHAVKGIGKTHAKWSPVATAWYRMLPEIVL 280
L A+A KG GK HAKW+P A + P+ L
Sbjct: 160 RLRAYAKKGFGKEHAKWNPTAGVAFEYDPDNAL 192
>gi|344289201|ref|XP_003416333.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB3-like
[Loxodonta africana]
Length = 275
Score = 104 bits (260), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 70/213 (32%), Positives = 104/213 (48%), Gaps = 27/213 (12%)
Query: 72 FCNNFRVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDE 131
+ N V + LT ++++F + D A+AN+ RR+ IAE+P +AI+ V I N+SV+ DE
Sbjct: 3 YANQPTVRITELTDENVKFIIENTDLAVANSIRRVFIAEVPIIAIDWVQIDANSSVLHDE 62
Query: 132 VLAHRLGLIPIIVDPRLFEYMSENDTSNEKN----TIVFKLHVLCERGGPRLTVKTNELK 187
+AHRLGLIP+I D + + D + E+ ++ F L V C R + +
Sbjct: 63 FIAHRLGLIPLISDDIVDKLQYSRDCTCEEFCPECSVEFTLDVRCNEDQTRHVTSRDLI- 121
Query: 188 WLPNGSELPLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPMLDITIARLGPGQEI 247
S+ PR S ++D P N DI I +L GQE+
Sbjct: 122 ------------------SNSPRVIPVTSRNRDNDP----NDYVEQDDILIVKLRKGQEL 159
Query: 248 ELEAHAVKGIGKTHAKWSPVATAWYRMLPEIVL 280
L A+A KG GK HAKW+P A + P+ L
Sbjct: 160 RLRAYAKKGFGKEHAKWNPTAGVAFEYDPDNAL 192
>gi|50753469|ref|XP_414001.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB3 [Gallus
gallus]
Length = 275
Score = 104 bits (260), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 71/213 (33%), Positives = 103/213 (48%), Gaps = 27/213 (12%)
Query: 72 FCNNFRVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDE 131
+ N V + LT ++++F + D A+AN+ RR+ IAE+P +AI+ V I N+SV+ DE
Sbjct: 3 YANQPTVRITELTDENVKFIIENTDLAVANSIRRVFIAEVPIIAIDWVQIDANSSVLHDE 62
Query: 132 VLAHRLGLIPI----IVDPRLFEYMSENDTSNEKNTIVFKLHVLCERGGPRLTVKTNELK 187
+AHRLGLIP+ IVD + D + ++ F L V C R + +
Sbjct: 63 FIAHRLGLIPLTSDDIVDKMQYSRDCTCDEFCPECSVEFTLDVRCNEDQTRHVTSRDLI- 121
Query: 188 WLPNGSELPLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPMLDITIARLGPGQEI 247
S+ PR S S+D P N DI I +L GQE+
Sbjct: 122 ------------------SNNPRVIPVTSRSRDNDP----NDYVEQDDILIVKLRKGQEL 159
Query: 248 ELEAHAVKGIGKTHAKWSPVATAWYRMLPEIVL 280
+L A+A KG GK HAKW+P A + P+ L
Sbjct: 160 KLRAYAKKGFGKEHAKWNPTAGVAFEYDPDNAL 192
>gi|514320|gb|AAB03740.1| RNA polymerase II third largest subunit [Arabidopsis thaliana]
Length = 319
Score = 104 bits (260), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 89/267 (33%), Positives = 132/267 (49%), Gaps = 38/267 (14%)
Query: 81 IRLTKDDM-EFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRLGL 139
IR KDD +F+L D ++ANA RR++I+E+PTMAI V I N+SV+ DE +A RL L
Sbjct: 14 IRELKDDYAKFELRETDVSMANALRRVMISEVPTMAIHLVKIEVNSSVLNDEFIAQRLSL 73
Query: 140 IPIIVDPRLFEYMSEN------DTSNEKNTIVFKLHVLCERGGPRLTVKTNELKWLPNGS 193
IP+ + + ++ D E ++ F L C L V + +L
Sbjct: 74 IPLTSERAMSMRFCQDCEDCNGDEHCEFCSVEFPLSAKC-VTDQTLDVTSRDLY------ 126
Query: 194 ELPLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPMLDITIARLGPGQEIELEAHA 253
++P+ P +TS SS+ D I IA+L GQE++L+A A
Sbjct: 127 --------SADPTVTPVDFTSNSSTSDSSEHKG---------IIIAKLRRGQELKLKALA 169
Query: 254 VKGIGKTHAKWSPVATAWYRMLPEIVLLED----VEDEDAEKLVKTCPVNVFDIEDIGSG 309
KGIGK HAKWSP AT Y P+I++ E+ + DE+ L+++ P VF I+ +
Sbjct: 170 RKGIGKDHAKWSPAATVTYMYEPDIIINEEMMNTLTDEEKIDLIESSPTKVFGIDPVTG- 228
Query: 310 KKRATVAQPRACTLCRECLRCGEEWEK 336
+ V P A T E ++ E K
Sbjct: 229 --QVVVVDPEAYTYDEEVIKKAEAMGK 253
>gi|15226509|ref|NP_179142.1| DNA-directed RNA polymerase II subunit RPB3-B [Arabidopsis
thaliana]
gi|12643753|sp|Q39212.2|RPB3B_ARATH RecName: Full=DNA-directed RNA polymerase II subunit RPB3-B;
Short=RNA polymerase II subunit 3-B; Short=RNA
polymerase II subunit B3-B; AltName: Full=DNA-directed
RNA polymerase II 36 kDa polypeptide B
gi|4544373|gb|AAD22284.1| DNA-directed RNA polymerase II, third largest subunit [Arabidopsis
thaliana]
gi|28973621|gb|AAO64135.1| putative DNA-directed RNA polymerase II, third largest subunit
[Arabidopsis thaliana]
gi|29824193|gb|AAP04057.1| putative DNA-directed RNA polymerase II, third largest subunit
[Arabidopsis thaliana]
gi|110736768|dbj|BAF00345.1| DNA-directed RNA polymerase II, third largest subunit [Arabidopsis
thaliana]
gi|330251303|gb|AEC06397.1| DNA-directed RNA polymerase II subunit RPB3-B [Arabidopsis
thaliana]
Length = 319
Score = 104 bits (260), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 86/267 (32%), Positives = 128/267 (47%), Gaps = 38/267 (14%)
Query: 81 IRLTKDDM-EFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRLGL 139
IR KDD +F+L D ++ANA RR++I+E+PTMAI V I N+SV+ DE +A RL L
Sbjct: 14 IRELKDDYAKFELRETDVSMANALRRVMISEVPTMAIHLVKIEVNSSVLNDEFIAQRLSL 73
Query: 140 IPIIVDPRLFEYMSEN------DTSNEKNTIVFKLHVLCERGGPRLTVKTNELKWLPNGS 193
IP+ + + ++ D E ++ F L C L V + +L
Sbjct: 74 IPLTSERAMSMRFCQDCEDCNGDEHCEFCSVEFPLSAKC-VTDQTLDVTSRDLY------ 126
Query: 194 ELPLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPMLDITIARLGPGQEIELEAHA 253
++P+ P D S + I IA+L GQE++L+A A
Sbjct: 127 --------SADPTVTP---------VDFTSNSSTSDSSEHKGIIIAKLRRGQELKLKALA 169
Query: 254 VKGIGKTHAKWSPVATAWYRMLPEIVLLED----VEDEDAEKLVKTCPVNVFDIEDIGSG 309
KGIGK HAKWSP AT Y P+I++ E+ + DE+ L+++ P VF I+ +
Sbjct: 170 RKGIGKDHAKWSPAATVTYMYEPDIIINEEMMNTLTDEEKIDLIESSPTKVFGIDPVTG- 228
Query: 310 KKRATVAQPRACTLCRECLRCGEEWEK 336
+ V P A T E ++ E K
Sbjct: 229 --QVVVVDPEAYTYDEEVIKKAEAMGK 253
>gi|284162138|ref|YP_003400761.1| RNA polymerase insert [Archaeoglobus profundus DSM 5631]
gi|284012135|gb|ADB58088.1| RNA polymerase insert [Archaeoglobus profundus DSM 5631]
Length = 261
Score = 104 bits (259), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 78/262 (29%), Positives = 127/262 (48%), Gaps = 54/262 (20%)
Query: 76 FRVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAH 135
R+E++ + + F L A+AN+FRR + + +PTMA++ V+ NTS + DE++AH
Sbjct: 1 MRIEILEESDLKVRFILHNAPIALANSFRRAMKSLVPTMAVDYVVFYMNTSFLYDEIIAH 60
Query: 136 RLGLIPIIVDPRLFEYMSENDTSNE---KNTIVFKLHVLCERGGPRLTVKTNELKWLPNG 192
R+GLIPI D F + E + F+L+V GP++
Sbjct: 61 RIGLIPIKTDLERFNMPDKCVCGGEGCPNCQVSFRLNV----EGPKVV------------ 104
Query: 193 SELPLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPMLD-ITIARLGPGQEIELEA 251
Y+ S+D PE I+P+ D I I L GQ++ +EA
Sbjct: 105 -------------------YSGDLISED--PE-----IKPVYDNIPIVELYEGQQLMIEA 138
Query: 252 HAVKGIGKTHAKWSPVATAWYRMLPEIVLLEDVEDEDAEKLVKTCPVNVFDIEDIGSGKK 311
A G GK HAK+ PV+ +Y+++PEI++ ++ + V CP N+ + +GK
Sbjct: 139 VARLGTGKEHAKYQPVSACYYKIIPEIIVKDNC--NNCGNCVSACPRNILRL----NGKV 192
Query: 312 RATVAQPRACTLCRECLRCGEE 333
T +C++CREC++ EE
Sbjct: 193 EVT--DILSCSMCRECVKVCEE 212
>gi|350539355|ref|NP_001232142.1| putative DNA directed RNA polymerase II polypeptide C [Taeniopygia
guttata]
gi|197127827|gb|ACH44325.1| putative DNA directed RNA polymerase II polypeptide C [Taeniopygia
guttata]
Length = 275
Score = 104 bits (259), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 71/213 (33%), Positives = 102/213 (47%), Gaps = 27/213 (12%)
Query: 72 FCNNFRVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDE 131
+ N V + LT ++++F + D A+AN+ RR+ IAE+P +AI+ V I N+SV+ DE
Sbjct: 3 YANQPTVRITELTDENVKFIIENTDLAVANSIRRVFIAEVPIIAIDWVQIDANSSVLHDE 62
Query: 132 VLAHRLGLIPI----IVDPRLFEYMSENDTSNEKNTIVFKLHVLCERGGPRLTVKTNELK 187
+AHRLGLIP+ IVD + D + ++ F L V C R + +
Sbjct: 63 FIAHRLGLIPLTSDDIVDKMQYSRDCTCDEFCPECSVEFTLDVRCNEDQTRHVTSRDLI- 121
Query: 188 WLPNGSELPLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPMLDITIARLGPGQEI 247
S+ PR S S+D P N DI I +L GQE+
Sbjct: 122 ------------------SNNPRVIPVTSRSRDNDP----NDYVEQDDILIVKLRKGQEL 159
Query: 248 ELEAHAVKGIGKTHAKWSPVATAWYRMLPEIVL 280
L A+A KG GK HAKW+P A + P+ L
Sbjct: 160 RLRAYAKKGFGKEHAKWNPTAGVAFEYDPDNAL 192
>gi|221114057|ref|XP_002158521.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB3-like [Hydra
magnipapillata]
Length = 273
Score = 104 bits (259), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 67/208 (32%), Positives = 103/208 (49%), Gaps = 28/208 (13%)
Query: 77 RVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHR 136
RV+++ T D+++F L D ++AN+ RRI IAE+PT+AI+ V I NNTSV+ DE +AHR
Sbjct: 8 RVKILEWTDDNLKFILENTDLSVANSLRRIFIAEVPTIAIDWVQIENNTSVLHDEFIAHR 67
Query: 137 LGLIPIIVDPRLFEYMSENDTS----NEKNTIVFKLHVLCERGGPRLTVKTNELKWLPNG 192
+GLIP+ D ++ + D + ++ ++ F L V C R + + P
Sbjct: 68 IGLIPLTSDEKVDKMCYSRDCTCSEFCDECSVKFTLDVKCTGETTRHVTSRDLISEDPKV 127
Query: 193 SELPLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPMLDITIARLGPGQEIELEAH 252
+ K D T + + +I I +L GQE++L A
Sbjct: 128 IPVTSRIKDDD---------TGYGETD---------------EIVIVKLRKGQELKLHAF 163
Query: 253 AVKGIGKTHAKWSPVATAWYRMLPEIVL 280
A KG GK HAKW+P A + P+ L
Sbjct: 164 AKKGFGKEHAKWNPTAGVSFEYDPDNAL 191
>gi|167517689|ref|XP_001743185.1| hypothetical protein [Monosiga brevicollis MX1]
gi|163778284|gb|EDQ91899.1| predicted protein [Monosiga brevicollis MX1]
Length = 276
Score = 104 bits (259), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 75/209 (35%), Positives = 101/209 (48%), Gaps = 21/209 (10%)
Query: 72 FCNNFRVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDE 131
F ++ R+EV D++ F L D A+AN+FRR++IAE+PTMAI+ V IA NTSV+ DE
Sbjct: 7 FNSSPRIEVTEHNHDEITFVLKSCDLALANSFRRVMIAEVPTMAIDAVHIAKNTSVLHDE 66
Query: 132 VLAHRLGLIPIIVDPRLFEYMSENDTSNEKNTIVFKLHVLCERGGPRLTVKTNELKWLPN 191
LAHRLGLIP+ + Y + T LCE G V +
Sbjct: 67 FLAHRLGLIPLTSEAADKFYYPRDCT-------------LCEMGCDHCQVMLT--LDVEG 111
Query: 192 GSELPLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPMLDITIARLGPGQEIELEA 251
+E P D S + F + + + +N P I I +L GQ I+L A
Sbjct: 112 HTEEPTHVTTDDLIS---QAAGDFMAVKPISAREESNIRNP---IVICKLAKGQRIQLTA 165
Query: 252 HAVKGIGKTHAKWSPVATAWYRMLPEIVL 280
A KG GK HAKW P A + P+ L
Sbjct: 166 FAKKGFGKEHAKWCPTAGIAFEYDPDNAL 194
>gi|432329920|ref|YP_007248063.1| DNA-directed RNA polymerase, alpha subunit/40 kD subunit
[Methanoregula formicicum SMSP]
gi|432136629|gb|AGB01556.1| DNA-directed RNA polymerase, alpha subunit/40 kD subunit
[Methanoregula formicicum SMSP]
Length = 276
Score = 103 bits (258), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 89/279 (31%), Positives = 122/279 (43%), Gaps = 51/279 (18%)
Query: 76 FRVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAH 135
+E L F L G A ANAFRR +I E+PT+AIE V I +NTS + DE+LAH
Sbjct: 1 MEIEFASLDDSLARFTLSGASPAFANAFRRAMIGEVPTLAIEDVRIYDNTSALFDEMLAH 60
Query: 136 RLGLIPIIVDPRLFEYMSENDTSNEKNTIVFKLHVLCERGGPRLTVKTNELKWLPNGSEL 195
RLGLIP+ D ++ S DT C G G+
Sbjct: 61 RLGLIPLKTDLSVY---STQDT--------------CSCG----------------GAGC 87
Query: 196 PLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPMLD-ITIARLGPGQEIELEAHAV 254
P T + PR T S DL+P+ + P+ D I I +L GQ++ +EA A+
Sbjct: 88 PGCTATYTLSVEGPRMVT----SSDLIPQ--DPGAAPVYDNIPIVKLTKGQKLVIEARAI 141
Query: 255 KGIGKTHAKWSPVATAWYRMLPEIVLLEDVEDEDAEKLVKTCPVNVFDIEDIGSGKK--- 311
G+ HAKW Y+ P ++ + DV D V+ CP ++ + GKK
Sbjct: 142 LNTGRAHAKWQSTLVCGYKNHP-VITVSDVCDA-CGMCVEECPRDIL----VAKGKKVQV 195
Query: 312 -RATVAQPRACTLC-RECLRCGEEWEKRVSIRRVKDHFI 348
+ + C LC R CL G E + I D FI
Sbjct: 196 AEGKLPECSMCRLCERACLASGIGEEPAIKISAEPDRFI 234
>gi|407410818|gb|EKF33119.1| DNA-directed RNA polymerase II subunit 3, putative [Trypanosoma
cruzi marinkellei]
Length = 337
Score = 103 bits (258), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 76/245 (31%), Positives = 109/245 (44%), Gaps = 36/245 (14%)
Query: 88 MEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRLGLIPIIVDPR 147
+EF L +D + AN RR+++AE+P + IE V I NTSV+ DE++AHR+GL+P+
Sbjct: 19 LEFQLAEVDNSFANGLRRVMLAEVPVLGIESVTIIQNTSVLPDEMIAHRIGLVPLY---- 74
Query: 148 LFEYMSENDTSNEKNTIVFKLHVLCERGGPRLTVKTNELKWLPNGSELPLETKPDSNPSS 207
S + + + LC G ELK ++ L+ DS
Sbjct: 75 ----------SMKARRMQYARDCLCGGSGCGECQINGELKVSCPSNKHSLQVFMDSLKID 124
Query: 208 KPRTYTSFSSSQDLLPEFSNNPIRPMLDITIARLGPGQEIELEAHAVKGIGKTHAKWSPV 267
Y S + + + LG QE+ L K I KTHAK+ PV
Sbjct: 125 DEEVYPVSSEER---------------GVWLLTLGRSQELNLRVVIRKNIAKTHAKFMPV 169
Query: 268 ATAWYRMLPEIVLLED----VEDEDAEKLVKTCPVNVFDIEDIGSGKKRATVAQPRACTL 323
AT R +IVL D ++ E + V+ CP VF +D + +A P AC
Sbjct: 170 ATVAMRYASDIVLNPDGFAKLDTEHRRQWVERCPRQVFRYDD---RTGQVLLADPDACIF 226
Query: 324 CRECL 328
CRECL
Sbjct: 227 CRECL 231
>gi|407832302|gb|EKF98383.1| DNA-directed RNA polymerase II subunit 3, putative [Trypanosoma
cruzi]
Length = 365
Score = 103 bits (258), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 76/245 (31%), Positives = 109/245 (44%), Gaps = 36/245 (14%)
Query: 88 MEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRLGLIPIIVDPR 147
+EF L +D + AN RR+++AE+P + IE V I NTSV+ DE++AHR+GL+P+
Sbjct: 47 LEFQLAEVDNSFANGLRRVMLAEVPVLGIESVTIIQNTSVLPDEMIAHRIGLVPLY---- 102
Query: 148 LFEYMSENDTSNEKNTIVFKLHVLCERGGPRLTVKTNELKWLPNGSELPLETKPDSNPSS 207
S + + + LC G ELK ++ L+ DS
Sbjct: 103 ----------SMKARRMQYARDCLCGGSGCGECQINGELKVSCPSNKHSLQVFMDSLKID 152
Query: 208 KPRTYTSFSSSQDLLPEFSNNPIRPMLDITIARLGPGQEIELEAHAVKGIGKTHAKWSPV 267
Y S + + + LG QE+ L K I KTHAK+ PV
Sbjct: 153 DEEVYPVSSEER---------------GVWLLTLGRSQELNLRVVIRKNIAKTHAKFMPV 197
Query: 268 ATAWYRMLPEIVLLED----VEDEDAEKLVKTCPVNVFDIEDIGSGKKRATVAQPRACTL 323
AT R +IVL D ++ E + V+ CP VF +D + +A P AC
Sbjct: 198 ATVAMRYASDIVLNPDGFAKLDTEHRRQWVERCPRQVFRYDD---RTGQVLLADPDACIF 254
Query: 324 CRECL 328
CRECL
Sbjct: 255 CRECL 259
>gi|291390190|ref|XP_002711589.1| PREDICTED: DNA directed RNA polymerase II polypeptide C
[Oryctolagus cuniculus]
Length = 275
Score = 103 bits (258), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 69/213 (32%), Positives = 104/213 (48%), Gaps = 27/213 (12%)
Query: 72 FCNNFRVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDE 131
+ N V + LT ++++F + D A+AN+ RR+ IAE+P +AI+ V I N+SV+ DE
Sbjct: 3 YANQPTVRITELTDENVKFIIENTDLAVANSIRRVFIAEVPIIAIDWVQIDANSSVLHDE 62
Query: 132 VLAHRLGLIPIIVDPRLFEYMSENDTSNEKN----TIVFKLHVLCERGGPRLTVKTNELK 187
+AHRLGLIP+ D + + + D + E+ ++ F L V C R + +
Sbjct: 63 FIAHRLGLIPLTSDDIVDKLQNSRDCTCEEFCPECSVEFTLDVRCNEDQTRHVTSRDLI- 121
Query: 188 WLPNGSELPLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPMLDITIARLGPGQEI 247
S+ PR S ++D P N DI I +L GQE+
Sbjct: 122 ------------------SNSPRVIPVTSRNRDNDP----NDYVEQDDILIVKLRKGQEL 159
Query: 248 ELEAHAVKGIGKTHAKWSPVATAWYRMLPEIVL 280
L A+A KG GK HAKW+P A + P+ L
Sbjct: 160 RLRAYAKKGFGKEHAKWNPTAGVAFEYDPDNAL 192
>gi|71663692|ref|XP_818836.1| DNA-directed RNA polymerase II subunit 3 [Trypanosoma cruzi strain
CL Brener]
gi|70884108|gb|EAN96985.1| DNA-directed RNA polymerase II subunit 3, putative [Trypanosoma
cruzi]
Length = 363
Score = 103 bits (258), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 76/245 (31%), Positives = 108/245 (44%), Gaps = 36/245 (14%)
Query: 88 MEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRLGLIPIIVDPR 147
+EF L +D + AN RR+++AE+P + IE V I NTSV+ DE++AHR+GL+P+
Sbjct: 45 LEFQLAEVDNSFANGLRRVMLAEVPVLGIESVTIIQNTSVLPDEMIAHRIGLVPLY---- 100
Query: 148 LFEYMSENDTSNEKNTIVFKLHVLCERGGPRLTVKTNELKWLPNGSELPLETKPDSNPSS 207
S + + + LC G ELK ++ L+ DS
Sbjct: 101 ----------SMKARRMQYARDCLCGGSGCGECQINGELKVSCPSNKHSLQVFMDSLKID 150
Query: 208 KPRTYTSFSSSQDLLPEFSNNPIRPMLDITIARLGPGQEIELEAHAVKGIGKTHAKWSPV 267
Y S + + LG QE+ L K I KTHAK+ PV
Sbjct: 151 DEEVYPVSSEEH---------------GVWLLTLGRSQELNLRVVIRKNIAKTHAKFMPV 195
Query: 268 ATAWYRMLPEIVLLED----VEDEDAEKLVKTCPVNVFDIEDIGSGKKRATVAQPRACTL 323
AT R +IVL D ++ E + V+ CP VF +D + +A P AC
Sbjct: 196 ATVAMRYASDIVLNPDGFAKLDTEHRRQWVERCPRQVFRYDD---RTGQVLLADPDACIF 252
Query: 324 CRECL 328
CRECL
Sbjct: 253 CRECL 257
>gi|149032425|gb|EDL87316.1| polymerase (RNA) II (DNA directed) polypeptide C, isoform CRA_a
[Rattus norvegicus]
Length = 241
Score = 103 bits (257), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 70/217 (32%), Positives = 105/217 (48%), Gaps = 27/217 (12%)
Query: 72 FCNNFRVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDE 131
+ N V + LT+++++F + D A+AN+ RR+ IAE+P +AI+ V I N+SV+ DE
Sbjct: 3 YANQPTVRITELTEENVKFIIENTDLAVANSIRRVFIAEVPIIAIDWVQIDANSSVLHDE 62
Query: 132 VLAHRLGLIPIIVDPRLFEYMSENDTSNEKN----TIVFKLHVLCERGGPRLTVKTNELK 187
+AHRLGLIP+ D + + D + E+ ++ F L V C R + +
Sbjct: 63 FIAHRLGLIPLTSDDIVDKLQYSRDCTCEEFCPECSVEFTLDVRCNEDQTRHVTSRDLI- 121
Query: 188 WLPNGSELPLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPMLDITIARLGPGQEI 247
S+ PR S ++D P N DI I +L GQE+
Sbjct: 122 ------------------SNSPRVIPVTSRNRDNDP----NDYVEQDDILIVKLRKGQEL 159
Query: 248 ELEAHAVKGIGKTHAKWSPVATAWYRMLPEIVLLEDV 284
L A+A KG GK HAKW+P A + P+ L V
Sbjct: 160 RLRAYAKKGFGKEHAKWNPTAGVAFEYDPDNALRHTV 196
>gi|29336059|ref|NP_033116.2| DNA-directed RNA polymerase II subunit RPB3 [Mus musculus]
gi|60223073|ref|NP_001012491.1| DNA-directed RNA polymerase II subunit RPB3 [Rattus norvegicus]
gi|354495470|ref|XP_003509853.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB3-like
[Cricetulus griseus]
gi|12805131|gb|AAH02023.1| Polymerase (RNA) II (DNA directed) polypeptide C [Mus musculus]
gi|59808391|gb|AAH89905.1| Polymerase (RNA) II (DNA directed) polypeptide C, 33kDa [Rattus
norvegicus]
gi|68534485|gb|AAH99548.1| Polymerase (RNA) II (DNA directed) polypeptide C [Mus musculus]
gi|74145092|dbj|BAE27415.1| unnamed protein product [Mus musculus]
gi|74191349|dbj|BAE30257.1| unnamed protein product [Mus musculus]
gi|74213568|dbj|BAE35592.1| unnamed protein product [Mus musculus]
gi|149032426|gb|EDL87317.1| polymerase (RNA) II (DNA directed) polypeptide C, isoform CRA_b
[Rattus norvegicus]
gi|344256627|gb|EGW12731.1| DNA-directed RNA polymerase II subunit RPB3 [Cricetulus griseus]
Length = 275
Score = 103 bits (257), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 69/213 (32%), Positives = 104/213 (48%), Gaps = 27/213 (12%)
Query: 72 FCNNFRVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDE 131
+ N V + LT+++++F + D A+AN+ RR+ IAE+P +AI+ V I N+SV+ DE
Sbjct: 3 YANQPTVRITELTEENVKFIIENTDLAVANSIRRVFIAEVPIIAIDWVQIDANSSVLHDE 62
Query: 132 VLAHRLGLIPIIVDPRLFEYMSENDTSNEKN----TIVFKLHVLCERGGPRLTVKTNELK 187
+AHRLGLIP+ D + + D + E+ ++ F L V C R + +
Sbjct: 63 FIAHRLGLIPLTSDDIVDKLQYSRDCTCEEFCPECSVEFTLDVRCNEDQTRHVTSRDLI- 121
Query: 188 WLPNGSELPLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPMLDITIARLGPGQEI 247
S+ PR S ++D P N DI I +L GQE+
Sbjct: 122 ------------------SNSPRVIPVTSRNRDNDP----NDYVEQDDILIVKLRKGQEL 159
Query: 248 ELEAHAVKGIGKTHAKWSPVATAWYRMLPEIVL 280
L A+A KG GK HAKW+P A + P+ L
Sbjct: 160 RLRAYAKKGFGKEHAKWNPTAGVAFEYDPDNAL 192
>gi|12837765|dbj|BAB23943.1| unnamed protein product [Mus musculus]
Length = 275
Score = 103 bits (257), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 69/213 (32%), Positives = 104/213 (48%), Gaps = 27/213 (12%)
Query: 72 FCNNFRVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDE 131
+ N V + LT+++++F + D A+AN+ RR+ IAE+P +AI+ V I N+SV+ DE
Sbjct: 3 YANQPTVRITELTEENVKFIIENTDLAVANSIRRVFIAEVPIIAIDWVQIDANSSVLHDE 62
Query: 132 VLAHRLGLIPIIVDPRLFEYMSENDTSNEKN----TIVFKLHVLCERGGPRLTVKTNELK 187
+AHRLGLIP+ D + + D + E+ ++ F L V C R + +
Sbjct: 63 FIAHRLGLIPLTSDDIVDKLQYSRDCTCEEFCPECSVEFTLDVRCNEDQTRHVTSRDLI- 121
Query: 188 WLPNGSELPLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPMLDITIARLGPGQEI 247
S+ PR S ++D P N DI I +L GQE+
Sbjct: 122 ------------------SNSPRVIPVTSRNRDNDP----NDYVEQDDILIVKLRKGQEL 159
Query: 248 ELEAHAVKGIGKTHAKWSPVATAWYRMLPEIVL 280
L A+A KG GK HAKW+P A + P+ L
Sbjct: 160 RLRAYAKKGFGKEHAKWNPTAGVAFEYDPDNAL 192
>gi|221043080|dbj|BAH13217.1| unnamed protein product [Homo sapiens]
Length = 424
Score = 103 bits (256), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 71/217 (32%), Positives = 105/217 (48%), Gaps = 27/217 (12%)
Query: 72 FCNNFRVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDE 131
+ N V + LT ++++F + D A+AN+ RR+ IAE+P +AI+ V I N+SV+ DE
Sbjct: 3 YANQPTVRITELTDENVKFIIENTDLAVANSIRRVFIAEVPIIAIDWVQIDANSSVLHDE 62
Query: 132 VLAHRLGLIPIIVDPRLFEYMSENDTSNEKN----TIVFKLHVLCERGGPRLTVKTNELK 187
+AHRLGLIP+I D + + D + E+ ++ F L V C R + +
Sbjct: 63 FIAHRLGLIPLISDDIVDKLQYSRDCTCEEFCPECSVEFTLDVRCNEDQTRHVTSRDLI- 121
Query: 188 WLPNGSELPLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPMLDITIARLGPGQEI 247
S+ PR S ++D P N DI I +L GQE+
Sbjct: 122 ------------------SNSPRVIPVTSRNRDNDP----NDYVEQDDILIVKLRKGQEL 159
Query: 248 ELEAHAVKGIGKTHAKWSPVATAWYRMLPEIVLLEDV 284
L A+A KG GK HAKW+P A + P+ L V
Sbjct: 160 RLRAYAKKGFGKEHAKWNPTAGVAFEYDPDNALRHTV 196
>gi|355712722|gb|AES04444.1| polymerase II polypeptide C, 33kDa [Mustela putorius furo]
Length = 273
Score = 103 bits (256), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 69/213 (32%), Positives = 103/213 (48%), Gaps = 27/213 (12%)
Query: 72 FCNNFRVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDE 131
+ N V + LT ++++F + D A+AN+ RR+ IAE+P +AI+ V I N+SV+ DE
Sbjct: 2 YANQPTVRITELTDENVKFIIENTDLAVANSIRRVFIAEVPIIAIDWVQIDANSSVLHDE 61
Query: 132 VLAHRLGLIPIIVDPRLFEYMSENDTSNEKN----TIVFKLHVLCERGGPRLTVKTNELK 187
+AHRLGLIP+ D + + D + E+ ++ F L V C R + +
Sbjct: 62 FIAHRLGLIPLTSDDIVDKLQYSRDCTCEEFCPECSVEFTLDVRCNEDQTRHVTSRDLI- 120
Query: 188 WLPNGSELPLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPMLDITIARLGPGQEI 247
S+ PR S ++D P N DI I +L GQE+
Sbjct: 121 ------------------SNSPRVIPVTSRNRDNDP----NDYVEQDDILIVKLRKGQEL 158
Query: 248 ELEAHAVKGIGKTHAKWSPVATAWYRMLPEIVL 280
L A+A KG GK HAKW+P A + P+ L
Sbjct: 159 RLRAYAKKGFGKEHAKWNPTAGVAFEYDPDNAL 191
>gi|383319963|ref|YP_005380804.1| DNA-directed RNA polymerase subunit D [Methanocella conradii HZ254]
gi|379321333|gb|AFD00286.1| DNA-directed RNA polymerase, subunit D [Methanocella conradii
HZ254]
Length = 262
Score = 103 bits (256), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 78/253 (30%), Positives = 116/253 (45%), Gaps = 45/253 (17%)
Query: 76 FRVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAH 135
++E++ L F L G+ A +NA RR ++A++P MAI+ V I +NTSV+ DE+LAH
Sbjct: 1 MKLEILDLGDRKARFILSGVTPAFSNALRRAMLADIPKMAIDYVDIYDNTSVMFDEMLAH 60
Query: 136 RLGLIPIIVDPRLFEYMSENDTSNEKNTIVFKLHVLCERGGPRLTVKTNELKWLPNGSEL 195
RLGLIP+ + +++ E D C+ G L T L +E
Sbjct: 61 RLGLIPLKTNLNMYKLKEECD---------------CKGAGCALCQVTFTLS-----AEG 100
Query: 196 PLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPMLDITIARLGPGQEIELEAHAVK 255
P SS P T +P N P I L GQ++ L A A
Sbjct: 101 PCMVHSRDLKSSDPET----------VPADDNIP--------IIELKEGQKLVLTAVARL 142
Query: 256 GIGKTHAKWSPVATAWYRMLPEIVLLEDVEDEDAEKLVKTCPVNVFDIEDIGSGKKRATV 315
G GK HAK+ PV Y+ +P I + E + ++ V+ CP VF ++ K + V
Sbjct: 143 GHGKEHAKFQPVCPPGYKYVPIIEISEKC--DSCKQCVEACPRGVFAVD-----KNKVVV 195
Query: 316 AQPRACTLCRECL 328
P C++C C+
Sbjct: 196 VSPYECSMCELCM 208
>gi|77735375|ref|NP_001029384.1| DNA-directed RNA polymerase II subunit RPB3 [Bos taurus]
gi|73949776|ref|XP_535283.2| PREDICTED: DNA-directed RNA polymerase II subunit RPB3 isoform 1
[Canis lupus familiaris]
gi|149699174|ref|XP_001494261.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB3-like isoform
1 [Equus caballus]
gi|301752940|ref|XP_002912312.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB3-like
[Ailuropoda melanoleuca]
gi|348572668|ref|XP_003472114.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB3-like [Cavia
porcellus]
gi|426242429|ref|XP_004015075.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB3 [Ovis aries]
gi|122146160|sp|Q3T0Q3.1|RPB3_BOVIN RecName: Full=DNA-directed RNA polymerase II subunit RPB3;
Short=RNA polymerase II subunit 3; Short=RNA polymerase
II subunit B3; AltName: Full=DNA-directed RNA polymerase
II subunit C
gi|74268238|gb|AAI02302.1| Polymerase (RNA) II (DNA directed) polypeptide C, 33kDa [Bos
taurus]
gi|152941118|gb|ABS44996.1| DNA directed RNA polymerase II polypeptide C [Bos taurus]
gi|281346645|gb|EFB22229.1| hypothetical protein PANDA_000038 [Ailuropoda melanoleuca]
gi|296477912|tpg|DAA20027.1| TPA: DNA-directed RNA polymerase II subunit RPB3 [Bos taurus]
gi|351697739|gb|EHB00658.1| DNA-directed RNA polymerase II subunit RPB3 [Heterocephalus glaber]
gi|417398216|gb|JAA46141.1| Putative rna polymerase ii subunit polr2c/rpb3 [Desmodus rotundus]
gi|440902632|gb|ELR53402.1| DNA-directed RNA polymerase II subunit RPB3 [Bos grunniens mutus]
Length = 275
Score = 103 bits (256), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 69/213 (32%), Positives = 103/213 (48%), Gaps = 27/213 (12%)
Query: 72 FCNNFRVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDE 131
+ N V + LT ++++F + D A+AN+ RR+ IAE+P +AI+ V I N+SV+ DE
Sbjct: 3 YANQPTVRITELTDENVKFIIENTDLAVANSIRRVFIAEVPIIAIDWVQIDANSSVLHDE 62
Query: 132 VLAHRLGLIPIIVDPRLFEYMSENDTSNEKN----TIVFKLHVLCERGGPRLTVKTNELK 187
+AHRLGLIP+ D + + D + E+ ++ F L V C R + +
Sbjct: 63 FIAHRLGLIPLTSDDIVDKLQYSRDCTCEEFCPECSVEFTLDVRCNEDQTRHVTSRDLI- 121
Query: 188 WLPNGSELPLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPMLDITIARLGPGQEI 247
S+ PR S ++D P N DI I +L GQE+
Sbjct: 122 ------------------SNSPRVIPVTSRNRDNDP----NDYVEQDDILIVKLRKGQEL 159
Query: 248 ELEAHAVKGIGKTHAKWSPVATAWYRMLPEIVL 280
L A+A KG GK HAKW+P A + P+ L
Sbjct: 160 RLRAYAKKGFGKEHAKWNPTAGVAFEYDPDNAL 192
>gi|386001506|ref|YP_005919805.1| DNA-directed RNA polymerase subunit D [Methanosaeta harundinacea
6Ac]
gi|357209562|gb|AET64182.1| DNA-directed RNA polymerase subunit D [Methanosaeta harundinacea
6Ac]
Length = 266
Score = 102 bits (255), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 87/276 (31%), Positives = 131/276 (47%), Gaps = 46/276 (16%)
Query: 76 FRVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAH 135
+VE+I L + F L G+ A ANA RR +AE+P++AI+++ I +NTSV+ DE L+
Sbjct: 1 MQVELIELVEGRARFLLRGVTPAFANAIRRACLAEVPSLAIDEISIYDNTSVLFDEQLSL 60
Query: 136 RLGLIPIIVDPRLFEYMSENDTSNEKNTIVFKLHVLCERGGPRLTVKTNELKWLPNGSEL 195
RLGL+PI D D S +F++ CE G G+
Sbjct: 61 RLGLVPIKAD----------DLS------LFRVPEECECG----------------GAGC 88
Query: 196 PLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPMLD-ITIARLGPGQEIELEAHAV 254
P + + P T S DL FS+ ++ + + I IA LG G+++ LE
Sbjct: 89 PACQVGMTLSAEGPCTV----HSGDL--RFSDPGVKVVFEKIPIAILGEGEKLMLEGIVT 142
Query: 255 KGIGKTHAKWSPVATAWYRMLPEIVLLEDVEDEDAEKLVKTCPVNVFDIEDIGSGKKRAT 314
G HAKW Y+ LPEI + + E K V+ CP V IG G+ +
Sbjct: 143 LNRGTVHAKWQAGTQCGYKNLPEITISDRC--EGCGKCVEVCPRKVL---VIGEGEGKVR 197
Query: 315 VAQPRACTLCRECLRCGEEWEKRVSIRRVKDHFICK 350
V P +C+LC+ C+ GE +++ V+D F+ K
Sbjct: 198 VHDPISCSLCKLCI--GECDVGAINVSAVEDVFVMK 231
>gi|395839490|ref|XP_003792622.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB3 [Otolemur
garnettii]
Length = 275
Score = 102 bits (254), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 70/213 (32%), Positives = 103/213 (48%), Gaps = 27/213 (12%)
Query: 72 FCNNFRVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDE 131
+ N V + LT ++++F + D A+AN+ RR+ IAE+P +AI+ V I N+SV+ DE
Sbjct: 3 YANQPTVRITELTDENVKFIIENTDLAVANSIRRVFIAEVPIIAIDWVQIDANSSVLHDE 62
Query: 132 VLAHRLGLIPIIVDPRLFEYMSENDTSNEKN----TIVFKLHVLCERGGPRLTVKTNELK 187
+AHRLGLIP+I D + + D + E+ ++ F L V C R + +
Sbjct: 63 FIAHRLGLIPLISDDIVDKLQYSRDCTCEEFCPECSVEFTLDVRCNEDQTRHVTSRDLV- 121
Query: 188 WLPNGSELPLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPMLDITIARLGPGQEI 247
S+ R S S+D P N DI I +L GQE+
Sbjct: 122 ------------------SNHHRVIPVTSRSRDNDP----NDYVEQDDILIVKLRKGQEL 159
Query: 248 ELEAHAVKGIGKTHAKWSPVATAWYRMLPEIVL 280
L A+A KG GK HAKW+P A + P+ L
Sbjct: 160 RLRAYAKKGFGKEHAKWNPTAGVAFEYDPDNAL 192
>gi|196004242|ref|XP_002111988.1| hypothetical protein TRIADDRAFT_24132 [Trichoplax adhaerens]
gi|190585887|gb|EDV25955.1| hypothetical protein TRIADDRAFT_24132 [Trichoplax adhaerens]
Length = 274
Score = 102 bits (254), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 69/205 (33%), Positives = 107/205 (52%), Gaps = 27/205 (13%)
Query: 77 RVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHR 136
RV + LT ++++F L D ++AN+ RRI IA +PT+AI+ V NNTSV+ DE +AHR
Sbjct: 8 RVTIPDLTNENVKFILENTDLSVANSLRRIFIANVPTLAIDWVQFVNNTSVLSDEFIAHR 67
Query: 137 LGLIPIIVDPRLFEYMSENDTSNEKN----TIVFKLHVLCERGGPRLTVKTNELKWLPNG 192
LGLIP+ D + D + ++ ++ F L V C R V T +L +
Sbjct: 68 LGLIPLTCDEVIDRLQYSRDCNCVEHCPECSVEFTLDVRCNDDQTR-HVTTRDL-ISSDS 125
Query: 193 SELPLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPMLDITIARLGPGQEIELEAH 252
+P+ T+ + T + +D DI IA+L GQEI+++A+
Sbjct: 126 RVVPVTTRYGEDD-------TVYGDQED--------------DILIAKLRRGQEIKIKAY 164
Query: 253 AVKGIGKTHAKWSPVATAWYRMLPE 277
A KG+G HAKW+P A+ + P+
Sbjct: 165 AKKGLGTEHAKWNPTASVAFEYDPD 189
>gi|335289326|ref|XP_003355849.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB3-like [Sus
scrofa]
Length = 275
Score = 102 bits (254), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 69/213 (32%), Positives = 105/213 (49%), Gaps = 27/213 (12%)
Query: 72 FCNNFRVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDE 131
+ N V + LT ++++F + D A+AN+ RR+ IAE+P +AI+ V I N+SV+ DE
Sbjct: 3 YANQPTVRITELTDENVKFIIENTDLAVANSIRRVFIAEVPIIAIDWVQIDANSSVLHDE 62
Query: 132 VLAHRLGLIPIIVDPRLFEYMSENDTSNEKN----TIVFKLHVLCERGGPRLTVKTNELK 187
+AHRLGLIP+ D + + D + E+ ++ F L V C R + +
Sbjct: 63 FIAHRLGLIPLTSDDIVDKLQYSRDCTCEEFCPECSVEFTLDVRCNEDQTRHVTSRDLIS 122
Query: 188 WLPNGSELPLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPMLDITIARLGPGQEI 247
P +P+ ++ N + P Y QD DI I +L GQE+
Sbjct: 123 NSPRV--IPVTSR---NRDNDPSDYV----EQD--------------DILIVKLRKGQEL 159
Query: 248 ELEAHAVKGIGKTHAKWSPVATAWYRMLPEIVL 280
L A+A KG GK HAKW+P A + P+ L
Sbjct: 160 RLRAYAKKGFGKEHAKWNPTAGVAFEYDPDNAL 192
>gi|156371210|ref|XP_001628658.1| predicted protein [Nematostella vectensis]
gi|156215640|gb|EDO36595.1| predicted protein [Nematostella vectensis]
Length = 274
Score = 102 bits (254), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 71/213 (33%), Positives = 103/213 (48%), Gaps = 27/213 (12%)
Query: 72 FCNNFRVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDE 131
+ N V+++ LT ++++F + ++AN RRI IAE PT+AI+ V I NNTSV+ DE
Sbjct: 3 YANQPSVKILELTDENVKFIIEKTGMSMANGLRRIFIAETPTIAIDWVQIENNTSVLHDE 62
Query: 132 VLAHRLGLIPI----IVDPRLFEYMSENDTSNEKNTIVFKLHVLCERGGPRLTVKTNELK 187
+AHRLGL+P+ +VD F D + +I F L V C R + +
Sbjct: 63 FIAHRLGLVPLTSDEVVDRMTFSRDCTCDEFCDDCSIEFTLDVKCTDDSTRHVTTQDLIS 122
Query: 188 WLPNGSELPLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPMLDITIARLGPGQEI 247
P +P+ ++ N R Y QD DI I +L GQE+
Sbjct: 123 TNPRC--VPVTSR---NREDDSREYM----EQD--------------DILIVKLRKGQEL 159
Query: 248 ELEAHAVKGIGKTHAKWSPVATAWYRMLPEIVL 280
+L A A KG K HAKW+P A + P+ L
Sbjct: 160 KLRAFAKKGFAKEHAKWNPTAGVAFEYDPDNAL 192
>gi|432119373|gb|ELK38451.1| DNA-directed RNA polymerase II subunit RPB3 [Myotis davidii]
Length = 275
Score = 102 bits (253), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 68/213 (31%), Positives = 102/213 (47%), Gaps = 27/213 (12%)
Query: 72 FCNNFRVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDE 131
+ N V + LT ++++F + D A+AN+ RR+ I E+P +AI+ V I N+SV+ DE
Sbjct: 3 YANQPTVRITELTDENVKFIVENTDLAVANSLRRVFIGEVPIIAIDWVQIDANSSVLHDE 62
Query: 132 VLAHRLGLIPIIVDPRLFEYMSENDTSNEKN----TIVFKLHVLCERGGPRLTVKTNELK 187
+AHRLGLIP+ D + + D + E+ ++ F L V C R + +
Sbjct: 63 FIAHRLGLIPLTSDDIVDKLQYSRDCTCEEFCPECSVEFTLDVRCNEDQTRHVTSRDLI- 121
Query: 188 WLPNGSELPLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPMLDITIARLGPGQEI 247
S+ PR S ++D P N DI I +L GQE+
Sbjct: 122 ------------------SNSPRVIPVTSRNRDNDP----NDYVDQDDILIVKLRKGQEL 159
Query: 248 ELEAHAVKGIGKTHAKWSPVATAWYRMLPEIVL 280
L A+A KG GK HAKW+P A + P+ L
Sbjct: 160 RLRAYAKKGFGKEHAKWNPTAGVAFEYDPDNAL 192
>gi|327287828|ref|XP_003228630.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB3-like [Anolis
carolinensis]
Length = 275
Score = 102 bits (253), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 68/213 (31%), Positives = 103/213 (48%), Gaps = 27/213 (12%)
Query: 72 FCNNFRVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDE 131
+ N V + L+ ++++F + D A+AN+ RR+ IAE+P +AI+ V I N+SV+ DE
Sbjct: 3 YANQPTVRITELSDENVKFIVENTDLAVANSIRRVFIAEVPIIAIDWVQIDANSSVLHDE 62
Query: 132 VLAHRLGLIPIIVDPRLFEYMSENDTSNEKN----TIVFKLHVLCERGGPRLTVKTNELK 187
+AHRLGLIP+ D + + D + ++ ++ F L V C R + +
Sbjct: 63 FIAHRLGLIPLTSDDVVDKLQYSRDCTCDEFCPECSVEFTLDVRCNEDQTRHVTSRDLI- 121
Query: 188 WLPNGSELPLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPMLDITIARLGPGQEI 247
S+ PR S S+D P N DI I +L GQE+
Sbjct: 122 ------------------SNNPRVIPVTSRSRDNDP----NDYVEQDDILIVKLRKGQEL 159
Query: 248 ELEAHAVKGIGKTHAKWSPVATAWYRMLPEIVL 280
L A+A KG GK HAKW+P A + P+ L
Sbjct: 160 RLRAYAKKGFGKEHAKWNPTAGVAFEYDPDNAL 192
>gi|126296213|ref|XP_001365715.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB3-like
[Monodelphis domestica]
Length = 275
Score = 102 bits (253), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 69/213 (32%), Positives = 104/213 (48%), Gaps = 27/213 (12%)
Query: 72 FCNNFRVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDE 131
+ N V + LT ++++F + D A+AN+ RR+ IAE+P +AI+ V I N+SV+ DE
Sbjct: 3 YANQPTVRITELTDENVKFIIENTDLAVANSIRRVFIAEVPIIAIDWVQIDANSSVLHDE 62
Query: 132 VLAHRLGLIPIIVDPRLFEYMSENDTSNEKN----TIVFKLHVLCERGGPRLTVKTNELK 187
+AHRLGLIP+ D + + D + E+ ++ F L V C R + +
Sbjct: 63 FIAHRLGLIPLTSDDIVDKLQYSRDCTCEEFCPECSVEFTLDVRCNEDQTRHVTSRDLIS 122
Query: 188 WLPNGSELPLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPMLDITIARLGPGQEI 247
P +P+ ++ N P Y QD DI I +L GQE+
Sbjct: 123 NTPRV--IPVTSRSRDN---DPSDYV----EQD--------------DILIVKLRKGQEL 159
Query: 248 ELEAHAVKGIGKTHAKWSPVATAWYRMLPEIVL 280
L A+A KG GK HAKW+P A + P+ L
Sbjct: 160 RLRAYAKKGFGKEHAKWNPTAGVAFEYDPDNAL 192
>gi|45360897|ref|NP_989124.1| polymerase (RNA) II (DNA directed) polypeptide C, 33kDa [Xenopus
(Silurana) tropicalis]
gi|38511942|gb|AAH61444.1| polymerase (RNA) II (DNA directed) polypeptide C [Xenopus
(Silurana) tropicalis]
gi|89266865|emb|CAJ83921.1| polymerase (RNA) II (DNA directed) polypeptide C, 33kDa [Xenopus
(Silurana) tropicalis]
gi|111598412|gb|AAH80362.1| polymerase (RNA) II (DNA directed) polypeptide C [Xenopus
(Silurana) tropicalis]
Length = 275
Score = 102 bits (253), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 72/217 (33%), Positives = 104/217 (47%), Gaps = 35/217 (16%)
Query: 72 FCNNFRVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDE 131
+ N V + LT ++++F + D AIAN+ RR+ IAE+PT+AI+ V I N+SV+ DE
Sbjct: 3 YANQPTVRITELTDENVKFIVENTDLAIANSIRRVFIAEVPTIAIDWVQIDANSSVLHDE 62
Query: 132 VLAHRLGLIPI----IVDPRLFEYMSENDTSNEKNTIVFKLHVLCERGGPRLTVK----T 183
+AHR+GLIP+ IVD + D + ++ F L V C R +
Sbjct: 63 FIAHRVGLIPLTSDDIVDKLQYSRDCTCDEFCPECSVEFTLDVRCNEDQTRHVTSRDLVS 122
Query: 184 NELKWLPNGSELPLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPMLDITIARLGP 243
N L+ +P S + + P Y QD DI I +L
Sbjct: 123 NNLRVIPVTSR---------SRDNDPNDYV----EQD--------------DILIVKLRK 155
Query: 244 GQEIELEAHAVKGIGKTHAKWSPVATAWYRMLPEIVL 280
GQE+ L A+A KG GK HAKW+P A + P+ L
Sbjct: 156 GQELRLRAYAKKGFGKEHAKWNPTAGVAFEYDPDNAL 192
>gi|125984946|ref|XP_001356237.1| GA20659 [Drosophila pseudoobscura pseudoobscura]
gi|195164762|ref|XP_002023215.1| GL21238 [Drosophila persimilis]
gi|54644558|gb|EAL33299.1| GA20659 [Drosophila pseudoobscura pseudoobscura]
gi|194105300|gb|EDW27343.1| GL21238 [Drosophila persimilis]
Length = 275
Score = 102 bits (253), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 70/210 (33%), Positives = 105/210 (50%), Gaps = 26/210 (12%)
Query: 72 FCNNFRVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDE 131
+ N V++ LT D+++F L + ++AN+ RR+ IAE PT+AI+ V + N++V+ DE
Sbjct: 3 YANQPNVQITELTDDNVKFVLEDTELSVANSLRRVFIAETPTLAIDWVQLEANSTVLSDE 62
Query: 132 VLAHRLGLIPIIVDPRLFEYMSENDT----SNEKNTIVFKLHVLCERGGPRLTVKTNELK 187
LAHR+GLIP+I D + D + ++ F L V C R V T +LK
Sbjct: 63 FLAHRIGLIPLISDDVVERLQYTRDCICLDFCPECSVEFTLDVKCSEEQTR-HVTTADLK 121
Query: 188 WLPNGSELPLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPMLDITIARLGPGQEI 247
SNP P T + + E S+ +I I +L GQE+
Sbjct: 122 --------------TSNPKVLPVTSRNQGEEDNEYGESSD-------EILIIKLRKGQEL 160
Query: 248 ELEAHAVKGIGKTHAKWSPVATAWYRMLPE 277
+L A+A KG GK HAKW+P A + P+
Sbjct: 161 KLRAYAKKGFGKEHAKWNPTAGVCFEYDPD 190
>gi|387018210|gb|AFJ51223.1| DNA-directed RNA polymerase II subunit RPB3-like [Crotalus
adamanteus]
Length = 275
Score = 102 bits (253), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 71/214 (33%), Positives = 107/214 (50%), Gaps = 29/214 (13%)
Query: 72 FCNNFRVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDE 131
+ N V + L+ D+++F + D A+AN+ RR+ IAE+P +AI+ V I N+SV+ DE
Sbjct: 3 YANQPTVRITELSDDNVKFIIENTDLAVANSIRRVFIAEVPIIAIDWVQIDANSSVLHDE 62
Query: 132 VLAHRLGLIPI----IVDPRLFEYMSENDTSNEKNTIVFKLHVLCERGGPRLTVKTNELK 187
+AHRLGLIP+ +VD + D ++ F L V C R V + +L
Sbjct: 63 FIAHRLGLIPLTSDGVVDKLQYSRDCNCDEFCPDCSVEFSLDVRCNEDQTR-HVTSRDL- 120
Query: 188 WLPNGSE-LPLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPMLDITIARLGPGQE 246
+ N S+ +P+ ++ N P Y P+ DI I +L GQE
Sbjct: 121 -ISNNSQVIPVTSRRRDN---DPNDYVE--------PD----------DILIVKLRKGQE 158
Query: 247 IELEAHAVKGIGKTHAKWSPVATAWYRMLPEIVL 280
+ L A+A KG GK HAKW+P A + P+ L
Sbjct: 159 LRLRAYATKGFGKEHAKWNPTAGVAFEYDPDNAL 192
>gi|126179746|ref|YP_001047711.1| DNA-directed RNA polymerase subunit D [Methanoculleus marisnigri
JR1]
gi|125862540|gb|ABN57729.1| DNA-directed RNA polymerase, subunit D [Methanoculleus marisnigri
JR1]
Length = 276
Score = 102 bits (253), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 79/251 (31%), Positives = 114/251 (45%), Gaps = 49/251 (19%)
Query: 82 RLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRLGLIP 141
RL + +F L G+ + AN RR +I+E+PT+AIE V I +NTSV+ DE+LAHRLGLIP
Sbjct: 7 RLDERVAKFTLSGVSMSFANMLRRAMISEVPTLAIEDVRIYDNTSVLFDEMLAHRLGLIP 66
Query: 142 IIVDPRLFEYMSE---NDTSNEKNTIVFKLHVLCERGGPRLTVKTNELKWLPNGSELPLE 198
+ D + ++ SE D T + L V GP+ TV +++L +
Sbjct: 67 LRTDLKRYKPRSECTCEDAGCPVCTATYTLSV----EGPK-TVYSSDL----------IP 111
Query: 199 TKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPMLDITIARLGPGQEIELEAHAVKGIG 258
PD+ P+ + I I L Q++ LEA A+ G G
Sbjct: 112 QDPDAAPADE--------------------------KIPIIELARDQKLVLEAQAIVGTG 145
Query: 259 KTHAKWSPVATAWYRMLPEIVLLEDVEDEDAEKLVKTCPVNVFDIEDIGSGKKRATVAQP 318
K HAKW Y+ P I + D + + CP +V + GK R +
Sbjct: 146 KEHAKWQATTACGYKNYPVIAI--DERCDGCGMCIDECPRSVL---ETAQGKIRVVEERQ 200
Query: 319 RACTLCRECLR 329
C+LCR C R
Sbjct: 201 ELCSLCRLCER 211
>gi|47221930|emb|CAF98942.1| unnamed protein product [Tetraodon nigroviridis]
Length = 275
Score = 101 bits (252), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 68/213 (31%), Positives = 104/213 (48%), Gaps = 27/213 (12%)
Query: 72 FCNNFRVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDE 131
+ N V++ LT ++++F + D A+AN+ RR+ ++E+PT+AI+ + I N+SV+ DE
Sbjct: 3 YANQPTVKITELTDENVKFVIENTDLAVANSIRRVFMSEVPTIAIDWIQIDANSSVLHDE 62
Query: 132 VLAHRLGLIPI----IVDPRLFEYMSENDTSNEKNTIVFKLHVLCERGGPRLTVKTNELK 187
+AHR+GLIP+ IVD + D + ++ L V C R + L
Sbjct: 63 FVAHRVGLIPLTSDDIVDKLQYSRDCTCDDFCPECSVELTLDVRCTEDQTRHVTSRDLL- 121
Query: 188 WLPNGSELPLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPMLDITIARLGPGQEI 247
S+ PR S S+D P N DI + +L GQE+
Sbjct: 122 ------------------SNNPRVIPVTSRSRDNDP----NDYVEQDDILVVKLRKGQEL 159
Query: 248 ELEAHAVKGIGKTHAKWSPVATAWYRMLPEIVL 280
L A+A KG GK HAKW+P A + P+ VL
Sbjct: 160 RLRAYAKKGFGKEHAKWNPTAGVSFEYDPDNVL 192
>gi|198422271|ref|XP_002119444.1| PREDICTED: similar to polymerase (RNA) II (DNA directed)
polypeptide C isoform 2 [Ciona intestinalis]
gi|198422273|ref|XP_002119542.1| PREDICTED: similar to polymerase (RNA) II (DNA directed)
polypeptide C isoform 3 [Ciona intestinalis]
gi|198422275|ref|XP_002119306.1| PREDICTED: similar to polymerase (RNA) II (DNA directed)
polypeptide C isoform 1 [Ciona intestinalis]
Length = 277
Score = 101 bits (252), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 69/213 (32%), Positives = 108/213 (50%), Gaps = 27/213 (12%)
Query: 72 FCNNFRVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDE 131
F N V + LT+D+++F + D + AN+ RR+ IAE+PT+AI+ + I N+SV+ DE
Sbjct: 3 FANQPTVSITELTEDNVKFVVEDTDLSTANSVRRVFIAEVPTLAIDWIQIEENSSVLNDE 62
Query: 132 VLAHRLGLIPI----IVDPRLFEYMSENDTSNEKNTIVFKLHVLCERGGPRLTVKTNELK 187
L+HR+GLIP+ +VD + D + ++ F L V C G R V T +L
Sbjct: 63 FLSHRIGLIPLTSDDVVDKIQYSRDCMCDDFCQDCSVEFYLDVKCTGEGTR-QVTTRDLI 121
Query: 188 WLPNGSELPLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPMLDITIARLGPGQEI 247
+ N +P+ ++ S+ + SF D+L IA+L GQ +
Sbjct: 122 SM-NPKVVPITSR------SRGDSSKSFGEQDDIL---------------IAKLRKGQSL 159
Query: 248 ELEAHAVKGIGKTHAKWSPVATAWYRMLPEIVL 280
+ +A A KG GK HAKW V+ + P+ L
Sbjct: 160 KFKAFAKKGFGKEHAKWQCVSAVAFEYDPDNAL 192
>gi|390939160|ref|YP_006402898.1| DNA-directed RNA polymerase [Desulfurococcus fermentans DSM 16532]
gi|390192267|gb|AFL67323.1| DNA-directed RNA polymerase [Desulfurococcus fermentans DSM 16532]
Length = 284
Score = 101 bits (252), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 73/262 (27%), Positives = 123/262 (46%), Gaps = 47/262 (17%)
Query: 74 NNFRVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVL 133
++ ++++ T ++ L + + N+ RR +++E+PTMA++ V I N+SV DE +
Sbjct: 3 SSLHIDILEKTPSTIKLYLRDVPLHLVNSLRRTILSEVPTMAVDYVAITENSSVFYDEYI 62
Query: 134 AHRLGLIPIIVDPRLFEYMSENDTSNEKNTIVFK----LHVLCERGGPR---LTVKTNEL 186
+HRLGLIP+ + L +Y + + + +F + + E GP LTV + +L
Sbjct: 63 SHRLGLIPLKSNEALNKYKPPEECAEAGDRGIFSQDCFVTLRLEASGPEKGVLTVYSRDL 122
Query: 187 KWLPNGSELPLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPMLDITIARLGPGQE 246
SS D++P + +I I +L Q
Sbjct: 123 ----------------------------VSSDPDVVPIYG--------EIPILKLIKDQS 146
Query: 247 IELEAHAVKGIGKTHAKWSPVATAWYRMLPEIVL-LEDVEDEDAEKLVKTCPVNVFDIED 305
I LEA+A G GK H KWSPV+TA ++ +P I L E + + + V CP N+F+ ++
Sbjct: 147 IRLEAYARLGRGKEHIKWSPVSTAAHKYIPVITLNSEKCKGAECSRCVNACPKNIFEADN 206
Query: 306 IGSGKKRATVAQPRACTLCREC 327
K + + CT CR C
Sbjct: 207 NSVRVKEDKILE---CTFCRLC 225
>gi|218884674|ref|YP_002429056.1| DNA-directed RNA polymerase subunit D [Desulfurococcus
kamchatkensis 1221n]
gi|218766290|gb|ACL11689.1| DNA-directed RNA polymerase subunit D [Desulfurococcus
kamchatkensis 1221n]
Length = 280
Score = 101 bits (251), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 73/260 (28%), Positives = 120/260 (46%), Gaps = 47/260 (18%)
Query: 76 FRVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAH 135
++++ T ++ L + + N+ RR +++E+PTMA++ V I N+SV DE ++H
Sbjct: 1 MHIDILEKTPSTIKLYLRDVPLHLVNSLRRTILSEVPTMAVDYVAITENSSVFYDEYISH 60
Query: 136 RLGLIPIIVDPRLFEYMSENDTSNEKNTIVFK----LHVLCERGGPR---LTVKTNELKW 188
RLGLIP+ + L +Y + + + +F + + E GP LTV + +L
Sbjct: 61 RLGLIPLKSNEALNKYKPPEECAEAGDRGIFSQDCFVTLRLEASGPEKDVLTVYSRDL-- 118
Query: 189 LPNGSELPLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPMLDITIARLGPGQEIE 248
SS D++P + +I I +L Q I
Sbjct: 119 --------------------------VSSDPDVVPVYG--------EIPILKLIKDQSIR 144
Query: 249 LEAHAVKGIGKTHAKWSPVATAWYRMLPEIVL-LEDVEDEDAEKLVKTCPVNVFDIEDIG 307
LEA+A G GK H KWSPV+TA ++ +P I + E + + + V CP N+F + G
Sbjct: 145 LEAYARLGRGKEHIKWSPVSTAAHKYVPAITIDSEKCKGAECSRCVNACPKNIF---EAG 201
Query: 308 SGKKRATVAQPRACTLCREC 327
+ R + CT CR C
Sbjct: 202 NNSVRVKEDKILECTFCRLC 221
>gi|444725635|gb|ELW66196.1| DNA-directed RNA polymerase II subunit RPB3 [Tupaia chinensis]
Length = 707
Score = 101 bits (251), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 70/217 (32%), Positives = 104/217 (47%), Gaps = 27/217 (12%)
Query: 72 FCNNFRVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDE 131
+ N V + LT ++++F + D A+AN+ RR+ IAE+P +AI+ V I N+SV+ DE
Sbjct: 435 YANQPTVRITELTDENVKFIIENTDLAVANSIRRVFIAEVPIIAIDWVQIDANSSVLHDE 494
Query: 132 VLAHRLGLIPIIVDPRLFEYMSENDTSNEKN----TIVFKLHVLCERGGPRLTVKTNELK 187
+AHRLGLIP+ D + + D + E+ ++ F L V C R + +
Sbjct: 495 FIAHRLGLIPLTSDDIVDKLQYSRDCTCEEFCPECSVEFTLDVRCNEDQTRHVTSRDLI- 553
Query: 188 WLPNGSELPLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPMLDITIARLGPGQEI 247
S+ PR S ++D P N DI I +L GQE+
Sbjct: 554 ------------------SNSPRVIPVTSRNRDNDP----NDYVEQDDILIVKLRKGQEL 591
Query: 248 ELEAHAVKGIGKTHAKWSPVATAWYRMLPEIVLLEDV 284
L A+A KG GK HAKW+P A + P+ L V
Sbjct: 592 RLRAYAKKGFGKEHAKWNPTAGVAFEYDPDNALRHTV 628
>gi|321475674|gb|EFX86636.1| hypothetical protein DAPPUDRAFT_313021 [Daphnia pulex]
Length = 274
Score = 101 bits (251), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 66/213 (30%), Positives = 108/213 (50%), Gaps = 29/213 (13%)
Query: 72 FCNNFRVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDE 131
+ N +++ LT+++++F + D ++AN+ RR+ IAE PT+AI+ V N++V+ DE
Sbjct: 3 YANQPNLKLTELTEENVKFQISDTDLSVANSLRRVFIAETPTLAIDWVQFEANSTVLFDE 62
Query: 132 VLAHRLGLIPIIVDPRLFEYMSENDTSNEKN----TIVFKLHVLCERGGPRLTVKTNELK 187
LAHR+GLIP+ D + + D + ++ F L V C R V T +LK
Sbjct: 63 FLAHRVGLIPLTSDESVEKMQYSRDCTCPDFCVDCSVEFTLDVKCSEDVTR-NVTTADLK 121
Query: 188 WLPNGSELPLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPMLDITIARLGPGQEI 247
S+ PR + S + P+ ++N +I I +L GQE+
Sbjct: 122 ------------------STDPRVVPATSKRDEEPPDDNDN------EILIVKLRKGQEL 157
Query: 248 ELEAHAVKGIGKTHAKWSPVATAWYRMLPEIVL 280
++ A+A KG GK HAKW+P A + P+ L
Sbjct: 158 KMRAYAKKGFGKEHAKWNPTAGVAFEYDPDNSL 190
>gi|365757905|gb|EHM99776.1| Rpc40p [Saccharomyces cerevisiae x Saccharomyces kudriavzevii VIN7]
Length = 224
Score = 101 bits (251), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 70/199 (35%), Positives = 107/199 (53%), Gaps = 21/199 (10%)
Query: 152 MSENDTSNEKNTIVFKLHVLCERG--GPRLTVKTNELKWLPNGSELPLETKPDSNPSSKP 209
+ +++ ++NTIV L+V C R P+ EL + L+ +P
Sbjct: 9 LPDDEKFTDENTIVLSLNVKCTRNPDAPKDCTDPKELYNNAHVYARDLKFEPQG------ 62
Query: 210 RTYTSFSSSQDLLPEFSNNPIRPMLDITIARLGPGQEIELEAHAVKGIGKTHAKWSPVAT 269
R T+F++ S P P DI +A+L PGQEI L+AH + GIG HAK+SPV+T
Sbjct: 63 RQSTTFAAC-------SVVPADP--DILLAKLRPGQEISLKAHCILGIGGDHAKFSPVST 113
Query: 270 AWYRMLPEIVLLEDVEDEDAEKLVKTCPVNVFDIEDIGSGKKRATVAQPRACTLCRECLR 329
A YR+LP+I +L+ ++ E A++ K P V I++ + A V R T+ RE LR
Sbjct: 114 ASYRLLPQINILQSIKGESAKRFQKCFPPGVIGIDETS---REAYVKDARKDTVSREVLR 170
Query: 330 CGEEWEKRVSIRRVKDHFI 348
EE+ +V + RV++HFI
Sbjct: 171 Y-EEFADKVKLGRVRNHFI 188
>gi|91094813|ref|XP_970635.1| PREDICTED: similar to DNA-directed RNA polymerase II subunit
[Tribolium castaneum]
gi|270006567|gb|EFA03015.1| hypothetical protein TcasGA2_TC010438 [Tribolium castaneum]
Length = 274
Score = 101 bits (251), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 72/212 (33%), Positives = 111/212 (52%), Gaps = 31/212 (14%)
Query: 72 FCNNFRVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDE 131
+ N V + LT D+++F + D ++AN+ RR+LIAE PT+AI+ V + N++V+ DE
Sbjct: 3 YANQPSVHITDLTDDNVKFYIEDTDLSVANSIRRVLIAETPTLAIDWVKLEANSTVLSDE 62
Query: 132 VLAHRLGLIPIIVDP--RLFEYMSE---NDTSNEKNTIVFKLHVLCERGGPRLTVKTNEL 186
LAHR+GLIP+I D + +Y + D +E ++ F L V C R V T +L
Sbjct: 63 FLAHRIGLIPLISDDVVQRLQYPRDCICTDFCHE-CSVEFTLDVKCTDDHTR-HVTTADL 120
Query: 187 KWLPNGSELPLETKPDSNPSSKPRTYTSFSSSQ-DLLPEFSNNPIRPMLDITIARLGPGQ 245
K SS PR + S + D E+ + +I I +L GQ
Sbjct: 121 K------------------SSDPRVIPATSKHRDDESSEYGDTD-----EILIIKLRKGQ 157
Query: 246 EIELEAHAVKGIGKTHAKWSPVATAWYRMLPE 277
E++++A+A KG GK HAKW+P A + P+
Sbjct: 158 ELKVKAYAKKGFGKEHAKWNPTAGVAFEYDPD 189
>gi|148234336|ref|NP_001084998.1| polymerase (RNA) II (DNA directed) polypeptide C, 33kDa [Xenopus
laevis]
gi|47682270|gb|AAH70601.1| MGC81245 protein [Xenopus laevis]
Length = 275
Score = 101 bits (251), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 72/217 (33%), Positives = 104/217 (47%), Gaps = 35/217 (16%)
Query: 72 FCNNFRVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDE 131
+ N V + LT ++++F + D AIAN+ RR+ IAE+PT+AI+ V I N+SV+ DE
Sbjct: 3 YANQPTVRLTELTDENVKFIVENTDLAIANSIRRVFIAEVPTIAIDWVQIDANSSVLHDE 62
Query: 132 VLAHRLGLIPI----IVDPRLFEYMSENDTSNEKNTIVFKLHVLCERGGPRLTVK----T 183
+AHR+GLIP+ IVD + D + ++ F L V C R +
Sbjct: 63 FIAHRVGLIPLTSDDIVDKLQYSRDCTCDEFCPECSVEFTLDVRCTEDQTRHVTSRDLVS 122
Query: 184 NELKWLPNGSELPLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPMLDITIARLGP 243
N L+ +P S + + P Y QD DI I +L
Sbjct: 123 NNLRVIPVTSR---------SRDNDPNDYV----EQD--------------DILIVKLRK 155
Query: 244 GQEIELEAHAVKGIGKTHAKWSPVATAWYRMLPEIVL 280
GQE+ L A+A KG GK HAKW+P A + P+ L
Sbjct: 156 GQELRLRAYAKKGFGKEHAKWNPTAGVAFEYDPDNAL 192
>gi|71535027|gb|AAZ32911.1| DNA-directed RNA polymerase II third largest subunit [Medicago
sativa]
Length = 184
Score = 100 bits (250), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 72/202 (35%), Positives = 101/202 (50%), Gaps = 31/202 (15%)
Query: 77 RVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHR 136
RV++ L D M+F+L DA++ANA RR++I+E+PT+AI+ V I N+SV+ DE +AHR
Sbjct: 6 RVKIRELKDDYMKFELRDTDASVANALRRVMISEVPTIAIDLVEIEVNSSVLNDEFIAHR 65
Query: 137 LGLIPIIVDPRLFEYMS------ENDTSNEKNTIVFKLHVLCERGGPRLTVKTNELKWLP 190
LGLIP+ + + S + D E ++ F L V C +T +T L
Sbjct: 66 LGLIPLTSERAMAMRFSRDCDACDGDGQCEYCSVEFHLRVKC------ITDQT-----LD 114
Query: 191 NGSELPLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPMLDITIARLGPGQEIELE 250
S+ + + P P S S I I +L GQE+ L
Sbjct: 115 VSSKDLISSDHTVTPVDVPGGDASVESDG--------------RGIIIVKLRRGQELRLR 160
Query: 251 AHAVKGIGKTHAKWSPVATAWY 272
A A KGIGK HAKWSP AT +
Sbjct: 161 AIARKGIGKDHAKWSPAATVTF 182
>gi|348503818|ref|XP_003439459.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB3-like
[Oreochromis niloticus]
Length = 275
Score = 100 bits (250), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 66/213 (30%), Positives = 104/213 (48%), Gaps = 27/213 (12%)
Query: 72 FCNNFRVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDE 131
+ N V++ LT ++++F + D A+AN+ RR+ ++E+PT+AI+ + I N+SV+ DE
Sbjct: 3 YANQPTVKITELTDENVKFVIENTDLAVANSLRRVFMSEVPTIAIDWIQIDANSSVLHDE 62
Query: 132 VLAHRLGLIPIIVDPRLFEYMSENDTSNE----KNTIVFKLHVLCERGGPRLTVKTNELK 187
+AHR+GLIP+ D + + D + E + ++ L V C R + L
Sbjct: 63 FIAHRVGLIPLTSDDIVDKMQYSRDCTCEDFCQECSVELTLDVRCNEDQTRHVTSRDLL- 121
Query: 188 WLPNGSELPLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPMLDITIARLGPGQEI 247
S+ PR S S+D P N DI + +L GQE+
Sbjct: 122 ------------------SNNPRVIPVTSRSRDNDP----NDYVEQDDILLVKLRKGQEL 159
Query: 248 ELEAHAVKGIGKTHAKWSPVATAWYRMLPEIVL 280
L A+A KG GK HAKW+P A + P+ L
Sbjct: 160 RLRAYAKKGFGKEHAKWNPTAGVSFEYDPDNAL 192
>gi|145328718|ref|NP_001077894.1| DNA-directed RNA polymerase II subunit RPB3-B [Arabidopsis
thaliana]
gi|330251304|gb|AEC06398.1| DNA-directed RNA polymerase II subunit RPB3-B [Arabidopsis
thaliana]
Length = 235
Score = 100 bits (250), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 79/235 (33%), Positives = 117/235 (49%), Gaps = 35/235 (14%)
Query: 81 IRLTKDDM-EFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRLGL 139
IR KDD +F+L D ++ANA RR++I+E+PTMAI V I N+SV+ DE +A RL L
Sbjct: 14 IRELKDDYAKFELRETDVSMANALRRVMISEVPTMAIHLVKIEVNSSVLNDEFIAQRLSL 73
Query: 140 IPIIVDPRLFEYMSEN------DTSNEKNTIVFKLHVLCERGGPRLTVKTNELKWLPNGS 193
IP+ + + ++ D E ++ F L C L V + +L
Sbjct: 74 IPLTSERAMSMRFCQDCEDCNGDEHCEFCSVEFPLSAKC-VTDQTLDVTSRDLY------ 126
Query: 194 ELPLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPMLDITIARLGPGQEIELEAHA 253
++P+ P D S + I IA+L GQE++L+A A
Sbjct: 127 --------SADPTVTP---------VDFTSNSSTSDSSEHKGIIIAKLRRGQELKLKALA 169
Query: 254 VKGIGKTHAKWSPVATAWYRMLPEIVLLED----VEDEDAEKLVKTCPVNVFDIE 304
KGIGK HAKWSP AT Y P+I++ E+ + DE+ L+++ P VF I+
Sbjct: 170 RKGIGKDHAKWSPAATVTYMYEPDIIINEEMMNTLTDEEKIDLIESSPTKVFGID 224
>gi|307352912|ref|YP_003893963.1| DNA-directed RNA polymerase [Methanoplanus petrolearius DSM 11571]
gi|307156145|gb|ADN35525.1| DNA-directed RNA polymerase [Methanoplanus petrolearius DSM 11571]
Length = 274
Score = 100 bits (250), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 82/249 (32%), Positives = 111/249 (44%), Gaps = 49/249 (19%)
Query: 82 RLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRLGLIP 141
RL +D F L A AN FRR +I E+PT+AIE VLI +N S + DE+LAHRLGLIP
Sbjct: 7 RLDEDIARFTLKDATPAFANTFRRTMIGEVPTLAIEDVLIYDNNSALFDEMLAHRLGLIP 66
Query: 142 IIVDPRLFEYMSENDTSNEKNTIVFKLHVLCERGGPRLTVKTNELKWLPNGSELPLETKP 201
I D L EY+ +++ C GG + G
Sbjct: 67 IKTD--LSEYVKKSE---------------CSCGGEGCSSCQAIFTLSVEG--------- 100
Query: 202 DSNPSSKPRTYTSFSSSQDLLP-EFSNNPIRPMLDITIARLGPGQEIELEAHAVKGIGKT 260
P T S DL+P + P+ +DI + +L Q++ LEA A IG
Sbjct: 101 -------PGTV----HSSDLIPADPRATPVN--MDIPVVKLEKDQKVVLEARAELNIGDE 147
Query: 261 HAKWSPVATAWYRMLPEIVLLEDVEDEDAEKLVKTCPVNVFDIEDIGSGKKRATVAQPRA 320
HAKW P Y+ P I + D + V+ CP NV + GKK +A +
Sbjct: 148 HAKWEPTLACGYKAYPVITI--DDRCDACGNCVEECPRNVLRV-----GKKSVEIADGKL 200
Query: 321 --CTLCREC 327
C++CR C
Sbjct: 201 EDCSMCRLC 209
>gi|410907303|ref|XP_003967131.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB3-like
[Takifugu rubripes]
Length = 275
Score = 100 bits (249), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 67/213 (31%), Positives = 103/213 (48%), Gaps = 27/213 (12%)
Query: 72 FCNNFRVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDE 131
+ N V++ LT ++++F + D A+AN+ RR+ ++E+PT+AI+ + I N+SV+ DE
Sbjct: 3 YANQPTVKITELTDENVKFVIENTDLAVANSIRRVFMSEVPTIAIDWIQIDANSSVLHDE 62
Query: 132 VLAHRLGLIPI----IVDPRLFEYMSENDTSNEKNTIVFKLHVLCERGGPRLTVKTNELK 187
+AHR+GLIP+ IVD + D + ++ L V C R + L
Sbjct: 63 FVAHRVGLIPLTSDDIVDKLQYSRDCTCDDFCSECSVELTLDVRCTEDQTRHVTSRDLL- 121
Query: 188 WLPNGSELPLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPMLDITIARLGPGQEI 247
S+ PR S S+D P N DI + +L GQE+
Sbjct: 122 ------------------SNNPRVIPVTSRSRDNDP----NDYVEQDDILVVKLRKGQEL 159
Query: 248 ELEAHAVKGIGKTHAKWSPVATAWYRMLPEIVL 280
L A+A KG GK HAKW+P A + P+ L
Sbjct: 160 RLRAYAKKGFGKEHAKWNPTAGVSFEYDPDNAL 192
>gi|432862447|ref|XP_004069860.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB3-like
[Oryzias latipes]
Length = 275
Score = 100 bits (249), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 66/213 (30%), Positives = 104/213 (48%), Gaps = 27/213 (12%)
Query: 72 FCNNFRVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDE 131
+ N V++ LT ++++F + D A+AN+ RR+ ++E+PT+AI+ + I N+SV+ DE
Sbjct: 3 YANQPTVKITELTDENVKFVIENTDLAVANSIRRVFMSEVPTIAIDWIQIDANSSVLHDE 62
Query: 132 VLAHRLGLIPIIVDPRLFEYMSENDTSNE----KNTIVFKLHVLCERGGPRLTVKTNELK 187
+AHR+GLIP+ D + + D + E + ++ L V C R + L
Sbjct: 63 FIAHRVGLIPLTSDDIVDKMQYSRDCTCEDFCPECSVELTLDVRCTEDQTRHVTSRDLL- 121
Query: 188 WLPNGSELPLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPMLDITIARLGPGQEI 247
S+ PR S S+D P N DI + +L GQE+
Sbjct: 122 ------------------SNNPRVIPVTSRSRDNDP----NDYVEQDDILLVKLRKGQEL 159
Query: 248 ELEAHAVKGIGKTHAKWSPVATAWYRMLPEIVL 280
L A+A KG GK HAKW+P A + P+ L
Sbjct: 160 RLRAYAKKGFGKEHAKWNPTAGVSFEYDPDNAL 192
>gi|164661059|ref|XP_001731652.1| hypothetical protein MGL_0920 [Malassezia globosa CBS 7966]
gi|159105553|gb|EDP44438.1| hypothetical protein MGL_0920 [Malassezia globosa CBS 7966]
Length = 213
Score = 100 bits (249), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 71/202 (35%), Positives = 100/202 (49%), Gaps = 40/202 (19%)
Query: 155 NDTSNEKNTIVFKLHVLCERGGPR-------LTVKTNELKWLPNGSELPLETKPDSNPSS 207
+D +N++NT+VF L C + G V +++L+W P G + ET DS P
Sbjct: 2 DDEANDQNTVVFNLKADCWKNGNSKDATVEGRYVYSSQLEWDPKGDQA--ETMADSPP-- 57
Query: 208 KPRTYTSFSSSQDLLPEFSNNPIRPM-LDITIARLGPGQEIELEAHAVKGIGKTHAKWSP 266
RP+ DI IA+L PGQ +E+E H KGIGK HAK+SP
Sbjct: 58 -----------------------RPVNQDIVIAKLAPGQGMEMELHCEKGIGKDHAKFSP 94
Query: 267 VATAWYRMLPEIVLLEDVEDEDAEKLVKTCPVNVFDIEDIGSGKKRATVAQPRACTLCRE 326
VATA YR+LP I +L+ + + K + P V G+ VA R T+ RE
Sbjct: 95 VATATYRLLPLIEILKPIPEPLIPKFISCFPEGVIH----KGGENGVYVADARKDTVTRE 150
Query: 327 CLRCGEEWEKRVSIRRVKDHFI 348
LR E+E V + R++DHF+
Sbjct: 151 VLRY-PEFEGYVRLGRIQDHFL 171
>gi|195338303|ref|XP_002035764.1| GM15286 [Drosophila sechellia]
gi|194129644|gb|EDW51687.1| GM15286 [Drosophila sechellia]
Length = 275
Score = 100 bits (249), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 68/210 (32%), Positives = 106/210 (50%), Gaps = 26/210 (12%)
Query: 72 FCNNFRVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDE 131
+ N V++ LT D+++F L + ++AN+ RR+ IAE PT+AI+ V + N++V+ DE
Sbjct: 3 YANQPSVQITELTDDNVKFVLEDTELSVANSLRRVFIAETPTLAIDWVQLEANSTVLSDE 62
Query: 132 VLAHRLGLIPIIVDPRLFEYMSENDT----SNEKNTIVFKLHVLCERGGPRLTVKTNELK 187
LAHR+GLIP+I D + D + ++ F L V C R V T +LK
Sbjct: 63 FLAHRIGLIPLISDDVVERLQYTRDCICLDFCPECSVEFTLDVKCSEEQTR-HVTTADLK 121
Query: 188 WLPNGSELPLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPMLDITIARLGPGQEI 247
N LP+ ++ ++ + S D +I I +L GQE+
Sbjct: 122 -SSNAKVLPVTSRHQGEEDNE------YGESND--------------EILIIKLRKGQEL 160
Query: 248 ELEAHAVKGIGKTHAKWSPVATAWYRMLPE 277
+L A+A KG GK HAKW+P A + P+
Sbjct: 161 KLRAYAKKGFGKEHAKWNPTAGVCFEYDPD 190
>gi|15678067|ref|NP_275181.1| DNA-directed RNA polymerase subunit D [Methanothermobacter
thermautotrophicus str. Delta H]
gi|3122766|sp|O26144.1|RPOD_METTH RecName: Full=DNA-directed RNA polymerase subunit D
gi|2621073|gb|AAB84545.1| DNA-dependent RNA polymerase, subunit D [Methanothermobacter
thermautotrophicus str. Delta H]
Length = 264
Score = 100 bits (249), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 72/247 (29%), Positives = 108/247 (43%), Gaps = 45/247 (18%)
Query: 84 TKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRLGLIPII 143
T +M F + G+ NA RRI + E+P +AIE V + N + + DEVLAHRLGL+P+
Sbjct: 9 TDTEMVFVVSGVTVPFINAIRRICMMEVPKLAIEYVNMYRNDAKMFDEVLAHRLGLVPLA 68
Query: 144 VDPRLFEYMSENDTSNEKNTIVFKLHVLCERGGPRLTVKTNELKWLPNGSELPLETKPDS 203
DP E + + + CE +V K P
Sbjct: 69 ADPEFAESLKMPEECD------------CEEYCSECSVSLTLRKKGPG------------ 104
Query: 204 NPSSKPRTYTSFSSSQDLLPEF-SNNPIRPMLDITIARLGPGQEIELEAHAVKGIGKTHA 262
S DL+ E + P+ P DI + +LG E+ELEA A G+G+ HA
Sbjct: 105 -----------VVYSGDLVSETPAVKPVYP--DIPLVKLGDDDELELEAVAQLGVGREHA 151
Query: 263 KWSPVATAWYRMLPEIVLLEDVEDEDAEKLVKTCPVNVFDIEDIGSGKKRATVAQPRACT 322
KW P Y+ P I ED ++ + ++ CP +V +G + V C+
Sbjct: 152 KWEPTTACAYKYYPRIEFSEDC--DECLECIEACPRDV-----LGEESGKPVVVDLENCS 204
Query: 323 LCRECLR 329
+C+ C+R
Sbjct: 205 MCKSCVR 211
>gi|74202237|dbj|BAE23500.1| unnamed protein product [Mus musculus]
Length = 332
Score = 100 bits (249), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 70/217 (32%), Positives = 104/217 (47%), Gaps = 27/217 (12%)
Query: 72 FCNNFRVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDE 131
+ N V + LT+++++F + D A+AN+ RR+ IAE+P +AI+ V I N+SV+ DE
Sbjct: 3 YANQPTVRITELTEENVKFIIENTDLAVANSIRRVFIAEVPIIAIDWVQIDANSSVLHDE 62
Query: 132 VLAHRLGLIPIIVDPRLFEYMSENDTSNEKN----TIVFKLHVLCERGGPRLTVKTNELK 187
+AHRLGLIP+ D + + D + E+ ++ F L V C R + +
Sbjct: 63 FIAHRLGLIPLTSDDIVDKLQYSRDCTCEEFCPECSVEFTLDVRCNEDQTRHVTSRDLI- 121
Query: 188 WLPNGSELPLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPMLDITIARLGPGQEI 247
S+ PR S ++D P N DI I +L GQE+
Sbjct: 122 ------------------SNSPRVIPVTSRNRDNDP----NDYVEQDDILIVKLRKGQEL 159
Query: 248 ELEAHAVKGIGKTHAKWSPVATAWYRMLPEIVLLEDV 284
L A+A KG GK HAKW+P A P+ L V
Sbjct: 160 RLRAYAKKGFGKEHAKWNPTAXVALEYDPDNALRHTV 196
>gi|195579088|ref|XP_002079394.1| GD23930 [Drosophila simulans]
gi|194191403|gb|EDX04979.1| GD23930 [Drosophila simulans]
Length = 275
Score = 100 bits (249), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 68/210 (32%), Positives = 106/210 (50%), Gaps = 26/210 (12%)
Query: 72 FCNNFRVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDE 131
+ N V++ LT D+++F L + ++AN+ RR+ IAE PT+AI+ V + N++V+ DE
Sbjct: 3 YANQPSVQITELTDDNVKFVLEDTELSVANSLRRVFIAETPTLAIDWVQLEANSTVLSDE 62
Query: 132 VLAHRLGLIPIIVDPRLFEYMSENDT----SNEKNTIVFKLHVLCERGGPRLTVKTNELK 187
LAHR+GLIP+I D + D + ++ F L V C R V T +LK
Sbjct: 63 FLAHRIGLIPLISDDVVERLQYTRDCICLDFCPECSVEFTLDVKCSEEQTR-HVTTADLK 121
Query: 188 WLPNGSELPLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPMLDITIARLGPGQEI 247
N LP+ ++ ++ + S D +I I +L GQE+
Sbjct: 122 -SSNAKVLPVTSRNQGEEDNE------YGESND--------------EILIIKLRKGQEL 160
Query: 248 ELEAHAVKGIGKTHAKWSPVATAWYRMLPE 277
+L A+A KG GK HAKW+P A + P+
Sbjct: 161 KLRAYAKKGFGKEHAKWNPTAGVCFEYDPD 190
>gi|304314287|ref|YP_003849434.1| DNA-directed RNA polymerase, subunit D [Methanothermobacter
marburgensis str. Marburg]
gi|302587746|gb|ADL58121.1| DNA-directed RNA polymerase, subunit D [Methanothermobacter
marburgensis str. Marburg]
Length = 264
Score = 100 bits (249), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 74/247 (29%), Positives = 107/247 (43%), Gaps = 45/247 (18%)
Query: 84 TKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRLGLIPII 143
T +M F + G+ NA RRI + E+P +AIE V + N + + DEVLAHRLGL+P+
Sbjct: 9 TDTEMVFVVTGVTVPFINAIRRICMMEVPKLAIEYVNMYRNDARMFDEVLAHRLGLVPLK 68
Query: 144 VDPRLFEYMSENDTSNEKNTIVFKLHVLCERGGPRLTVKTNELKWLPNGSELPLETKPDS 203
DP E + + + CE +V K P
Sbjct: 69 ADPEFIEGLKMPEECD------------CEEYCSECSVSFTLKKKGPG------------ 104
Query: 204 NPSSKPRTYTSFSSSQDLLPEF-SNNPIRPMLDITIARLGPGQEIELEAHAVKGIGKTHA 262
S+DLL E + P+ P DI + +LG E+ELEA A G+G+ HA
Sbjct: 105 -----------VVYSRDLLSETPAVEPVYP--DIPLVKLGDEDEVELEAVAQLGVGRDHA 151
Query: 263 KWSPVATAWYRMLPEIVLLEDVEDEDAEKLVKTCPVNVFDIEDIGSGKKRATVAQPRACT 322
KW P Y+ P I E E ++ + V CP V +G + V C+
Sbjct: 152 KWEPTTACAYKYYPMITFTE--ECDECLECVDACPRGV-----LGDESGKPEVLDVENCS 204
Query: 323 LCRECLR 329
+C+ C+R
Sbjct: 205 MCKSCVR 211
>gi|195472723|ref|XP_002088649.1| GE18688 [Drosophila yakuba]
gi|194174750|gb|EDW88361.1| GE18688 [Drosophila yakuba]
Length = 275
Score = 100 bits (249), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 68/210 (32%), Positives = 106/210 (50%), Gaps = 26/210 (12%)
Query: 72 FCNNFRVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDE 131
+ N V++ LT D+++F L + ++AN+ RR+ IAE PT+AI+ V + N++V+ DE
Sbjct: 3 YANQPSVQITELTDDNVKFVLEDTELSVANSLRRVFIAETPTLAIDWVQLEANSTVLSDE 62
Query: 132 VLAHRLGLIPIIVDPRLFEYMSENDT----SNEKNTIVFKLHVLCERGGPRLTVKTNELK 187
LAHR+GLIP+I D + D + ++ F L V C R V T +LK
Sbjct: 63 FLAHRIGLIPLISDDVVERLQYTRDCICLDFCPECSVEFTLDVKCSEEQTR-HVTTADLK 121
Query: 188 WLPNGSELPLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPMLDITIARLGPGQEI 247
N LP+ ++ ++ + S D +I I +L GQE+
Sbjct: 122 -SSNAKVLPVTSRNQGEEDNE------YGESND--------------EILIIKLRKGQEL 160
Query: 248 ELEAHAVKGIGKTHAKWSPVATAWYRMLPE 277
+L A+A KG GK HAKW+P A + P+
Sbjct: 161 KLRAYAKKGFGKEHAKWNPTAGVCFEYDPD 190
>gi|17137650|ref|NP_477419.1| RNA polymerase II 33kD subunit [Drosophila melanogaster]
gi|4490379|emb|CAB38635.1| RNA polymerase II p33 subunit [Drosophila melanogaster]
gi|7298103|gb|AAF53342.1| RNA polymerase II 33kD subunit [Drosophila melanogaster]
gi|16767948|gb|AAL28192.1| GH07456p [Drosophila melanogaster]
gi|220944002|gb|ACL84544.1| RpII33-PA [synthetic construct]
gi|220953902|gb|ACL89494.1| RpII33-PA [synthetic construct]
Length = 275
Score = 100 bits (248), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 68/210 (32%), Positives = 106/210 (50%), Gaps = 26/210 (12%)
Query: 72 FCNNFRVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDE 131
+ N V++ LT D+++F L + ++AN+ RR+ IAE PT+AI+ V + N++V+ DE
Sbjct: 3 YANQPSVQITELTDDNVKFVLEDTELSVANSLRRVFIAETPTLAIDWVQLEANSTVLSDE 62
Query: 132 VLAHRLGLIPIIVDPRLFEYMSENDT----SNEKNTIVFKLHVLCERGGPRLTVKTNELK 187
LAHR+GLIP+I D + D + ++ F L V C R V T +LK
Sbjct: 63 FLAHRIGLIPLISDDVVERLQYTRDCICLDFCPECSVEFTLDVKCSEEQTR-HVTTADLK 121
Query: 188 WLPNGSELPLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPMLDITIARLGPGQEI 247
N LP+ ++ ++ + S D +I I +L GQE+
Sbjct: 122 -SSNAKVLPVTSRNQGEEDNE------YGESND--------------EILIIKLRKGQEL 160
Query: 248 ELEAHAVKGIGKTHAKWSPVATAWYRMLPE 277
+L A+A KG GK HAKW+P A + P+
Sbjct: 161 KLRAYAKKGFGKEHAKWNPTAGVCFEYDPD 190
>gi|195433589|ref|XP_002064793.1| GK15011 [Drosophila willistoni]
gi|194160878|gb|EDW75779.1| GK15011 [Drosophila willistoni]
Length = 275
Score = 100 bits (248), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 68/210 (32%), Positives = 106/210 (50%), Gaps = 26/210 (12%)
Query: 72 FCNNFRVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDE 131
+ N V++ LT D+++F L + ++AN+ RR+ IAE PT+AI+ V + N++V+ DE
Sbjct: 3 YANQPSVQITELTDDNVKFILEDTELSVANSLRRVFIAETPTLAIDWVQLEANSTVLSDE 62
Query: 132 VLAHRLGLIPIIVDPRLFEYMSENDT----SNEKNTIVFKLHVLCERGGPRLTVKTNELK 187
LAHR+GLIP+I D + D + ++ F L V C R V T +LK
Sbjct: 63 FLAHRIGLIPLISDDVVERLQYTRDCICLDFCPECSVEFTLDVKCNEEQTR-HVTTADLK 121
Query: 188 WLPNGSELPLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPMLDITIARLGPGQEI 247
N LP+ ++ ++ + S D +I I +L GQE+
Sbjct: 122 -SSNAKVLPVTSRNQGEEDNE------YGESND--------------EILIIKLRKGQEL 160
Query: 248 ELEAHAVKGIGKTHAKWSPVATAWYRMLPE 277
+L A+A KG GK HAKW+P A + P+
Sbjct: 161 KLRAYAKKGFGKEHAKWNPTAGVCFEYDPD 190
>gi|268566109|ref|XP_002639637.1| C. briggsae CBR-RPB-3 protein [Caenorhabditis briggsae]
Length = 280
Score = 100 bits (248), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 69/212 (32%), Positives = 105/212 (49%), Gaps = 21/212 (9%)
Query: 72 FCNNFRVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDE 131
+ N +EV LT D ++F L D ++AN+ RR+ +AE+PT+AI+ V I NTSV+ DE
Sbjct: 3 YANQPNIEVTELTNDLIKFVLWDTDLSVANSLRRVFMAEVPTIAIDWVQIETNTSVLHDE 62
Query: 132 VLAHRLGLIPIIVDPRL--FEYM-SENDTSNEKNTIVFKLHVLCERGGPRLTVKTNELKW 188
+AHR+GLIP + D + +Y E ++ +I F L C L V T +L+
Sbjct: 63 FIAHRMGLIPFLSDYHVEKMQYTRCECAEFCDECSIPFILQTKCTDEA-TLAVTTADLR- 120
Query: 189 LPNGSELPLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPMLDITIARLGPGQEIE 248
P G E + + F + +++L I +L GQE+
Sbjct: 121 -PLGVETTVRPACGEALRERGAVRDEFHAREEIL---------------IVKLRKGQELN 164
Query: 249 LEAHAVKGIGKTHAKWSPVATAWYRMLPEIVL 280
L+A+A KG GK HAKW+P + P+ L
Sbjct: 165 LKAYAKKGFGKEHAKWNPTCGVAFEYDPDNAL 196
>gi|195031522|ref|XP_001988351.1| GH11119 [Drosophila grimshawi]
gi|195115860|ref|XP_002002474.1| GI12561 [Drosophila mojavensis]
gi|195397712|ref|XP_002057472.1| GJ18149 [Drosophila virilis]
gi|193904351|gb|EDW03218.1| GH11119 [Drosophila grimshawi]
gi|193913049|gb|EDW11916.1| GI12561 [Drosophila mojavensis]
gi|194141126|gb|EDW57545.1| GJ18149 [Drosophila virilis]
Length = 275
Score = 100 bits (248), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 68/210 (32%), Positives = 106/210 (50%), Gaps = 26/210 (12%)
Query: 72 FCNNFRVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDE 131
+ N V++ LT D+++F L + ++AN+ RR+ IAE PT+AI+ V + N++V+ DE
Sbjct: 3 YANQPSVQITELTDDNVKFVLEDTELSVANSLRRVFIAETPTLAIDWVQLEANSTVLSDE 62
Query: 132 VLAHRLGLIPIIVDPRLFEYMSENDT----SNEKNTIVFKLHVLCERGGPRLTVKTNELK 187
LAHR+GLIP+I D + D + ++ F L V C R V T +LK
Sbjct: 63 FLAHRIGLIPLISDDVVERLQYTRDCICLDFCPECSVEFTLDVKCNEEQTR-HVTTADLK 121
Query: 188 WLPNGSELPLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPMLDITIARLGPGQEI 247
N LP+ ++ ++ + S D +I I +L GQE+
Sbjct: 122 -SSNAKVLPVTSRNQGEEDNE------YGESTD--------------EILIIKLRKGQEL 160
Query: 248 ELEAHAVKGIGKTHAKWSPVATAWYRMLPE 277
+L A+A KG GK HAKW+P A + P+
Sbjct: 161 KLRAYAKKGFGKEHAKWNPTAGVCFEYDPD 190
>gi|332376707|gb|AEE63493.1| unknown [Dendroctonus ponderosae]
Length = 275
Score = 99.8 bits (247), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 69/210 (32%), Positives = 109/210 (51%), Gaps = 27/210 (12%)
Query: 72 FCNNFRVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDE 131
+ N V + LT ++++F + D ++AN+ RRILIAE PT+AI+ V + N++V+ DE
Sbjct: 3 YANQPSVHITDLTDENVKFYVEDTDLSVANSIRRILIAETPTLAIDWVKLEANSTVLSDE 62
Query: 132 VLAHRLGLIPIIVDP--RLFEYMSENDTSN--EKNTIVFKLHVLCERGGPRLTVKTNELK 187
LAHR+GLIP+I D + +Y + ++ ++ ++ F L V C R V T +LK
Sbjct: 63 FLAHRIGLIPLISDEVVQRLQYPRDCICTDFCQECSVEFTLDVKCTDDQTR-HVTTADLK 121
Query: 188 WLPNGSELPLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPMLDITIARLGPGQEI 247
SS PR + S +D +N +I I +L GQE+
Sbjct: 122 ------------------SSDPRVIPAPSKHRD----DDSNDYGETDEILIVKLRKGQEL 159
Query: 248 ELEAHAVKGIGKTHAKWSPVATAWYRMLPE 277
++ A+A KG GK HAKW+P + P+
Sbjct: 160 KIRAYAKKGFGKEHAKWNPTCGVAFEYDPD 189
>gi|397779749|ref|YP_006544222.1| DNA-directed RNA polymerase subunit D [Methanoculleus bourgensis
MS2]
gi|396938251|emb|CCJ35506.1| DNA-directed RNA polymerase subunit D [Methanoculleus bourgensis
MS2]
Length = 276
Score = 99.8 bits (247), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 76/248 (30%), Positives = 114/248 (45%), Gaps = 43/248 (17%)
Query: 82 RLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRLGLIP 141
RL + +F + + + AN RR +++E+PT+AIE + I +NTSV+ DE+LAHRLGLIP
Sbjct: 7 RLDERVAKFTISSVSTSFANMLRRAMMSEVPTLAIEDIRIYDNTSVLFDEMLAHRLGLIP 66
Query: 142 IIVDPRLFEYMSENDTSNEKNTIVFKLHVLCERGGPRLTVKTNELKWLPNGSELPLETKP 201
+ D L Y++ + + E G+ P+ T
Sbjct: 67 LRTD--LDRYVTRAECTCE-------------------------------GAGCPVCTAT 93
Query: 202 DSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPMLDITIARLGPGQEIELEAHAVKGIGKTH 261
+ P+T S DL+P+ + +I I L Q++ LEA+AV G GK H
Sbjct: 94 YTLSVEGPKTV----YSSDLIPQ-DPDAAPAEEEIPIIDLDKDQKVVLEAYAVIGTGKEH 148
Query: 262 AKWSPVATAWYRMLPEIVLLEDVEDEDAEKLVKTCPVNVFDIEDIGSGKKRATVAQPRAC 321
AKW Y+ P I + D + + V CP +V + G GK R + C
Sbjct: 149 AKWQATTACGYKNYPVITV--DEKCDGCGMCVDECPRDVL---EAGQGKVRVIGGRQEFC 203
Query: 322 TLCRECLR 329
+LCR C R
Sbjct: 204 SLCRLCER 211
>gi|320166369|gb|EFW43268.1| polymerase II polypeptide C [Capsaspora owczarzaki ATCC 30864]
Length = 270
Score = 99.4 bits (246), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 67/196 (34%), Positives = 101/196 (51%), Gaps = 31/196 (15%)
Query: 72 FCNNFRVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDE 131
F + V+++ LT D++ F L + ++AN+ RR+ IAE+PTMAI+ V N+SV+ DE
Sbjct: 3 FASQPVVQILELTPDNVRFVLSKTELSVANSLRRVCIAEVPTMAIDLVQFDENSSVLHDE 62
Query: 132 VLAHRLGLIPIIVDPRL-FEYMSENDTSNEKNTIVFKLHVLCERGGPRLTVKTNELKWLP 190
+AHRLGL+P+ + F+Y++E D N L + E GP +V +L+
Sbjct: 63 FVAHRLGLLPLASETAGEFDYLAECDCDGGCNRCTVSLTL--EAEGP-CSVVARDLR--- 116
Query: 191 NGSELPLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPMLDITIARLGPGQEIELE 250
S+ S P + S S+ D+ + +LG GQ I+L
Sbjct: 117 -----------SSDESVVPISQRDASGSE-------------QHDVVLVKLGAGQRIKLT 152
Query: 251 AHAVKGIGKTHAKWSP 266
A A KGIGK HAKW+P
Sbjct: 153 AIAKKGIGKEHAKWNP 168
>gi|406698967|gb|EKD02188.1| RNA polymerase II subunit 3 [Trichosporon asahii var. asahii CBS
8904]
Length = 378
Score = 99.4 bits (246), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 68/212 (32%), Positives = 107/212 (50%), Gaps = 13/212 (6%)
Query: 74 NNFRVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVL 133
N + V L +D+ F L G+D A AN+ RR ++A++PT+AI++V NTS I DE+L
Sbjct: 24 NQPNILVRNLNRDETTFHLSGVDMAYANSLRRTMMADVPTLAIDQVSFYQNTSPIPDEML 83
Query: 134 AHRLGLIPIIVD--PRLFEYMSENDTSNE----KNTIVFKLHVLCERGGPRLTVKTNELK 187
AHRLG++P+I + Y + D T+ K+ + G + V ++ L+
Sbjct: 84 AHRLGMVPLISRDVGKGLRYTRDCDCDEGCYYCMVTLRLKVSAVNREYGSPMAVTSDMLE 143
Query: 188 WLPNGS---ELPLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPMLDITIARLGPG 244
+P+ + + P PD + R + + +P +P I +AR+ G
Sbjct: 144 VIPSPNTPQQSPYGPPPDI--GEEERELIAHHDPELGVPVGKGDPT--ASPIQLARISRG 199
Query: 245 QEIELEAHAVKGIGKTHAKWSPVATAWYRMLP 276
QEIE+ A KGI K HAKWSP++ Y P
Sbjct: 200 QEIEVVCKAYKGIAKHHAKWSPLSAVAYEYDP 231
>gi|282164928|ref|YP_003357313.1| DNA-directed RNA polymerase subunit D [Methanocella paludicola
SANAE]
gi|282157242|dbj|BAI62330.1| DNA-directed RNA polymerase subunit D [Methanocella paludicola
SANAE]
Length = 262
Score = 99.4 bits (246), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 78/265 (29%), Positives = 124/265 (46%), Gaps = 45/265 (16%)
Query: 76 FRVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAH 135
++E++ L +F L + A ANA RR ++A++P MAI+ V I +NTSV+ DE+LAH
Sbjct: 1 MKLEILELGDRKAKFVLSEVTPAFANAVRRAMLADIPKMAIDYVDIYDNTSVMFDEMLAH 60
Query: 136 RLGLIPIIVDPRLFEYMSENDTSNEKNTIVFKLHVLCERGGPRLTVKTNELKWLPNGSEL 195
R+GLIPI + +++ E D E + ++ GP + V + ++K
Sbjct: 61 RMGLIPIKTNLDMYKLREECDCKGEGCALC-QVSFTLSAEGPCM-VHSRDMK-------- 110
Query: 196 PLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPMLDITIARLGPGQEIELEAHAVK 255
SS D +P N P I L Q++ L A A
Sbjct: 111 --------------------SSDPDTVPADDNVP--------IIELKERQKVVLTAVARL 142
Query: 256 GIGKTHAKWSPVATAWYRMLPEIVLLEDVEDEDAEKLVKTCPVNVFDIEDIGSGKKRATV 315
G GK H+K+ PV Y+ +P I+ + D D ++ V+ CP VF ++ K + V
Sbjct: 143 GRGKEHSKFQPVCPPGYKYVP-IIEISDKCDS-CKQCVEQCPRGVFAVD-----KNKVVV 195
Query: 316 AQPRACTLCRECLRCGEEWEKRVSI 340
P C++C ECL + ++SI
Sbjct: 196 DNPYNCSMCEECLEACDLKAIKLSI 220
>gi|50307587|ref|XP_453773.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
gi|49642907|emb|CAH00869.1| KLLA0D16170p [Kluyveromyces lactis]
Length = 307
Score = 99.4 bits (246), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 71/203 (34%), Positives = 105/203 (51%), Gaps = 30/203 (14%)
Query: 77 RVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHR 136
+V++ TKD+++F L +D A+AN+ RR++I+E+PT+AI+ V I NT+V+ DE +AHR
Sbjct: 7 QVKIREATKDNVDFILSNVDLALANSLRRVMISEIPTLAIDSVEIETNTTVLADEFIAHR 66
Query: 137 LGLIPIIVDPRLFEYMSENDTSNEKNTIVFKLHVLCERGGPRLTVKTNELKWLPNGSELP 196
LGLIP+ S + + +V+ CE R +V EL G
Sbjct: 67 LGLIPL--------------QSADIDQVVYCRDCYCEDHCDRCSV---ELILHAIG---- 105
Query: 197 LETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPI---RPMLDITIARLGPGQEIELEAHA 253
E++ +N +K TS DL +PI R + I +L GQEI ++ A
Sbjct: 106 -ESESTTNVYAKDLQITS-----DLKGRNIGHPIIQDREANGVLICKLRKGQEIRVKCIA 159
Query: 254 VKGIGKTHAKWSPVATAWYRMLP 276
KGI K HAKWSP A + P
Sbjct: 160 KKGISKEHAKWSPSAAIEFEYDP 182
>gi|374628605|ref|ZP_09700990.1| DNA-directed RNA polymerase, subunit D [Methanoplanus limicola DSM
2279]
gi|373906718|gb|EHQ34822.1| DNA-directed RNA polymerase, subunit D [Methanoplanus limicola DSM
2279]
Length = 274
Score = 99.4 bits (246), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 80/254 (31%), Positives = 113/254 (44%), Gaps = 59/254 (23%)
Query: 82 RLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRLGLIP 141
RL ++ +F L G A AN+FRR +I ++PT+AIE V + +N S + DE+L HRLGLIP
Sbjct: 7 RLDENAAKFILKGTTFAFANSFRRAMITDVPTLAIEDVYLYDNNSALFDEILTHRLGLIP 66
Query: 142 IIVDPRLFEYMSENDTS-----NEKNTIVFKLHVLCERGGPRLTVKTNELKWLPNGSELP 196
I D L EY+ ++ S + VF L V GP + +
Sbjct: 67 ITTD--LSEYVRRDECSCGGEGCSQCQAVFTLSV----EGPGIVM--------------- 105
Query: 197 LETKPDSNPSSKPRTYTSFSSSQDLLPEFSNN-PIRPMLDITIARLGPGQEIELEAHAVK 255
S DL+P+ P+ P DI I +L Q++ LEA A
Sbjct: 106 ---------------------SGDLVPQNPGAVPVNP--DIPIVKLDEDQKVVLEARAEL 142
Query: 256 GIGKTHAKWSPVATAWYRMLPEIVLLEDVEDEDAEKLVKTCPVNVFDIEDIGSGKKRATV 315
G HAKW P Y+ P I + + + K V+ CP NV +G K V
Sbjct: 143 NTGMEHAKWQPTLACGYKAYPVITVSDRC--DGCGKCVEQCPRNVLK-----AGSKAVLV 195
Query: 316 AQPRA--CTLCREC 327
+ R C++CR C
Sbjct: 196 IESRLEDCSMCRLC 209
>gi|269784633|ref|NP_001161428.1| DNA-directed RNA polymerase II subunit RPB3 [Danio rerio]
gi|28278474|gb|AAH46047.1| Polymerase (RNA) II (DNA directed) polypeptide C [Danio rerio]
Length = 275
Score = 99.0 bits (245), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 67/213 (31%), Positives = 103/213 (48%), Gaps = 27/213 (12%)
Query: 72 FCNNFRVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDE 131
+ N V++ L+ ++++F + D A+AN+ RR+ ++E+PT+AI+ V I N+SV+ DE
Sbjct: 3 YANQPTVKITELSDENVKFVIENTDLAVANSIRRVFMSEVPTIAIDWVQIDANSSVLHDE 62
Query: 132 VLAHRLGLIPI----IVDPRLFEYMSENDTSNEKNTIVFKLHVLCERGGPRLTVKTNELK 187
+AHR+GLIP+ IVD + D + ++ L V C R + L
Sbjct: 63 FVAHRVGLIPLTSDDIVDKMQYSRDCTCDDFCPECSVELTLDVRCTEDQTRHVTSRDLL- 121
Query: 188 WLPNGSELPLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPMLDITIARLGPGQEI 247
S+ PR S S+D P N DI + +L GQE+
Sbjct: 122 ------------------SNNPRVIPVTSRSRDNDP----NDYVEQDDILLVKLRKGQEL 159
Query: 248 ELEAHAVKGIGKTHAKWSPVATAWYRMLPEIVL 280
L A+A KG GK HAKW+P A + P+ L
Sbjct: 160 RLRAYAKKGFGKEHAKWNPTAGVAFEYDPDNAL 192
>gi|154151761|ref|YP_001405379.1| DNA-directed RNA polymerase subunit D [Methanoregula boonei 6A8]
gi|154000313|gb|ABS56736.1| DNA-directed RNA polymerase [Methanoregula boonei 6A8]
Length = 276
Score = 99.0 bits (245), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 87/285 (30%), Positives = 119/285 (41%), Gaps = 63/285 (22%)
Query: 76 FRVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAH 135
+E L F L G AN+FRR +I E+PT+AIE V I +NTS + DE+LAH
Sbjct: 1 MEIEFASLDDTVARFTLSGAQPGFANSFRRAMIGEVPTLAIEDVRIYDNTSALFDEMLAH 60
Query: 136 RLGLIPIIVDPRLFEYMSENDTSNEKN-----TIVFKLHVLCERGGPRLTVKTNELKWLP 190
RLGLIPI D L Y ++ D S T+ + L V GP+L
Sbjct: 61 RLGLIPIRTD--LTSYSTQGDCSCGGAGCPSCTVTYTLSV----EGPKLV---------- 104
Query: 191 NGSELPLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPMLD-ITIARLGPGQEIEL 249
+S DL+P+ + P+ D I I +L GQ++ +
Sbjct: 105 --------------------------TSSDLIPQ--DPQAAPVSDNIPIVKLIKGQKLVI 136
Query: 250 EAHAVKGIGKTHAKWSPVATAWYRMLPEIVLLEDVEDEDAEKLVKTCPVNVFDIEDIGSG 309
EA AV GK HAKW P Y+ P I + + V CP + ++
Sbjct: 137 EARAVLNKGKVHAKWQPTLVCGYKNYPVITISPTC--DACGMCVDECPRTILALKG---- 190
Query: 310 KKRATVAQPR-----ACTLC-RECLRCGEEWEKRVSIRRVKDHFI 348
K+ V + R C LC R CL G E + I D +I
Sbjct: 191 -KKVEVIEGRLPDCSMCKLCERACLASGIGEEPAIRISAEPDRYI 234
>gi|401416108|ref|XP_003872549.1| DNA-directed RNA polymerase I-like protein [Leishmania mexicana
MHOM/GT/2001/U1103]
gi|322488773|emb|CBZ24020.1| DNA-directed RNA polymerase I-like protein [Leishmania mexicana
MHOM/GT/2001/U1103]
Length = 337
Score = 99.0 bits (245), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 81/267 (30%), Positives = 118/267 (44%), Gaps = 51/267 (19%)
Query: 76 FRVEVIRLTKDD------MEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQ 129
R+E++ K++ + F L +D++ ANA RR+++AE+PT+AIE V I NTSV+
Sbjct: 1 MRLEIVECVKNEHAAGETLTFQLNEVDSSFANALRRVMLAEIPTLAIEYVTIRQNTSVLP 60
Query: 130 DEVLAHRLGLIPIIVDPRLFEYMSENDTSNEKNTIVFKLHVLCERGGPRLTVKTNELKWL 189
DE++AHRLGL+P+ S + + F C G T LK
Sbjct: 61 DEMIAHRLGLVPLF--------------SGKAKRLNFPQDCGCGGSGCPDCQITGSLKV- 105
Query: 190 PNGSELPLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPML----DITIARLGPGQ 245
P ++ D L + + + P+ I + LG Q
Sbjct: 106 ----------------QCPPNQHSKQVFIGDSL-QIDDAEVYPVSAEEHGIWLVTLGRSQ 148
Query: 246 EIELEAHAVKGIGKTHAKWSPVATAWYRMLPEIVL----LEDVEDEDAEKLVKTCPVNVF 301
++L K I KTHAK+ PVAT R PEI+L + + A + V CP NVF
Sbjct: 149 VLDLHVVIRKNIAKTHAKFMPVATVAMRYAPEIILNLNGFQTLGKAKAREWVARCPRNVF 208
Query: 302 D-IEDIGSGKKRATVAQPRACTLCREC 327
+E G + V AC CREC
Sbjct: 209 RFVERTG----QVEVQDEDACIFCREC 231
>gi|401889280|gb|EJT53216.1| RNA polymerase II subunit 3 [Trichosporon asahii var. asahii CBS
2479]
Length = 378
Score = 99.0 bits (245), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 68/212 (32%), Positives = 107/212 (50%), Gaps = 13/212 (6%)
Query: 74 NNFRVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVL 133
N + V L +D+ F L G+D A AN+ RR ++A++PT+AI++V NTS I DE+L
Sbjct: 24 NQPNILVRNLNRDETTFHLSGVDMAYANSLRRTMMADVPTLAIDQVSFYQNTSPIPDEML 83
Query: 134 AHRLGLIPIIVD--PRLFEYMSENDTSNE----KNTIVFKLHVLCERGGPRLTVKTNELK 187
AHRLG++P+I + Y + D T+ K+ + G + V ++ L+
Sbjct: 84 AHRLGMVPLISRDVGKGLRYTRDCDCDEGCYYCMVTLRLKVSAVNREYGSPMAVTSDMLE 143
Query: 188 WLPNGS---ELPLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPMLDITIARLGPG 244
+P+ + + P PD + R + + +P +P I +AR+ G
Sbjct: 144 VIPSPNTPQQSPYGPPPDI--GEEERELIAHHDPELGVPVGKGDPT--ASPIQLARISRG 199
Query: 245 QEIELEAHAVKGIGKTHAKWSPVATAWYRMLP 276
QEIE+ A KGI K HAKWSP++ Y P
Sbjct: 200 QEIEVICKAYKGIAKHHAKWSPLSAVAYEYDP 231
>gi|389593679|ref|XP_003722088.1| DNA-directed RNA polymerase I-like protein [Leishmania major strain
Friedlin]
gi|321438586|emb|CBZ12345.1| DNA-directed RNA polymerase I-like protein [Leishmania major strain
Friedlin]
Length = 337
Score = 99.0 bits (245), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 81/267 (30%), Positives = 118/267 (44%), Gaps = 51/267 (19%)
Query: 76 FRVEVIRLTKDD------MEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQ 129
R+E++ K++ + F L +D++ ANA RR+++AE+PT+AIE V I NTSV+
Sbjct: 1 MRLEIVECVKNEHAAGETLTFQLSEVDSSFANALRRVMLAEIPTLAIEYVTIRQNTSVLP 60
Query: 130 DEVLAHRLGLIPIIVDPRLFEYMSENDTSNEKNTIVFKLHVLCERGGPRLTVKTNELKWL 189
DE++AHRLGL+P+ S + + F C G T LK
Sbjct: 61 DEMIAHRLGLVPLF--------------SEKAKRLNFPQDCGCGGSGCPDCQITGSLKV- 105
Query: 190 PNGSELPLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPML----DITIARLGPGQ 245
P ++ D L + + + P+ I + LG Q
Sbjct: 106 ----------------QCPPNQHSKQVFIGDSL-QIDDAEVYPVSAEEHGIWLVTLGRSQ 148
Query: 246 EIELEAHAVKGIGKTHAKWSPVATAWYRMLPEIVL----LEDVEDEDAEKLVKTCPVNVF 301
++L K I KTHAK+ PVAT R PEI+L + + A + V CP NVF
Sbjct: 149 VLDLHVVIRKNIAKTHAKFMPVATVAMRYAPEIILNPNGFQTLGKAKAREWVARCPRNVF 208
Query: 302 D-IEDIGSGKKRATVAQPRACTLCREC 327
+E G + V AC CREC
Sbjct: 209 RFVERTG----QVEVQDEDACIFCREC 231
>gi|307108317|gb|EFN56557.1| hypothetical protein CHLNCDRAFT_144215 [Chlorella variabilis]
Length = 283
Score = 99.0 bits (245), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 83/280 (29%), Positives = 124/280 (44%), Gaps = 62/280 (22%)
Query: 77 RVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHR 136
+VE+ +LT D EF L G D ++ANA RRI++ E+PT+AIE V NT+V+ DE LAHR
Sbjct: 11 QVELRKLTDDYCEFVLKGTDVSMANALRRIILVEVPTIAIELVEFEANTTVLNDEFLAHR 70
Query: 137 LGLIPIIVDPRLFEYMSENDTSNEKNTIVFKLHVLCERGGPRLTVKTNELKWLPNGSELP 196
LGLI P ++ + +++K +
Sbjct: 71 LGLI------------------------------------PLVSTRVHDMKSI------- 87
Query: 197 LETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPMLDITIARLGPGQEIELEAHAVKG 256
E + + + + R Y D R I + ++ QE++L A A KG
Sbjct: 88 YEAQVGAWVARRRRHYIHPVGYHD----------REDKGILLVKMRRNQELKLRAVARKG 137
Query: 257 IGKTHAKWSPVATAWYRMLPEI----VLLEDVEDEDAEKLVKTCPVNVFDIEDIGSGKKR 312
GK HAKW PVAT Y+ +PEI L++ + D+ E+ P F + + R
Sbjct: 138 TGKDHAKWMPVATCVYQFMPEITINHALMDTLTDDQKEEWCAADPRKTFRLNKLTH---R 194
Query: 313 ATVAQPRACTLCRECLRCGEEWEK--RVSIRRVKDHFICK 350
V P E L EE K V+I++ +D FI +
Sbjct: 195 VEVTNPELYQYDGEVLAKAEEMGKPGLVAIKQKQDTFIFR 234
>gi|147919298|ref|YP_686966.1| DNA-directed RNA polymerase subunit D [Methanocella arvoryzae
MRE50]
gi|110622362|emb|CAJ37640.1| DNA-directed RNA polymerase, subunit D [Methanocella arvoryzae
MRE50]
Length = 262
Score = 99.0 bits (245), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 78/253 (30%), Positives = 114/253 (45%), Gaps = 45/253 (17%)
Query: 76 FRVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAH 135
++E+I L +F L + A AN RR +IA++P MAI+ V I +NTSV+ DE+LA
Sbjct: 1 MKLEIIELKDRKAKFVLTDVTPAFANGLRRAMIADVPKMAIDYVDIYDNTSVLFDEMLAL 60
Query: 136 RLGLIPIIVDPRLFEYMSENDTSNEKNTIVFKLHVLCERGGPRLTVKTNELKWLPNGSEL 195
RLGLIP+ + +++ SE + C+ G L T L +E
Sbjct: 61 RLGLIPLKTNLDMYQLQSECE---------------CKGAGCSLCQVT-----LSVSAEG 100
Query: 196 PLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPMLDITIARLGPGQEIELEAHAVK 255
P SS P T +P +N P I L GQ++ A
Sbjct: 101 PCVVHSSDMKSSDPET----------VPVDNNIP--------IIELKQGQKVVASGTARL 142
Query: 256 GIGKTHAKWSPVATAWYRMLPEIVLLEDVEDEDAEKLVKTCPVNVFDIEDIGSGKKRATV 315
G K HAK+ PV A Y+ +P IV + D D+ + + CP VF IE K + V
Sbjct: 143 GFTKEHAKYQPVCAAGYKNVP-IVTVSDKCDQ-CKACIDECPRGVFKIE-----KNKLVV 195
Query: 316 AQPRACTLCRECL 328
C++C+ C+
Sbjct: 196 TDQYKCSMCKLCV 208
>gi|427787879|gb|JAA59391.1| Putative rna polymerase ii subunit polr2c/rpb3 [Rhipicephalus
pulchellus]
Length = 274
Score = 98.6 bits (244), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 67/210 (31%), Positives = 102/210 (48%), Gaps = 28/210 (13%)
Query: 72 FCNNFRVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDE 131
+ N V + LT ++++F + D ++AN+ RR+ IAE PT+AI+ V + N++V+ DE
Sbjct: 3 YANQPSVHISELTDENVKFFVEDTDLSVANSLRRVFIAETPTLAIDWVQLEANSTVLHDE 62
Query: 132 VLAHRLGLIPIIVDPRLFEYMSENDTSNE----KNTIVFKLHVLCERGGPRLTVKTNELK 187
+AHRLGLIP+ D + + D + + ++ F L V C R V T +LK
Sbjct: 63 FIAHRLGLIPLTSDEIVDKMQYSRDCTCADFCTECSVEFTLDVKCLDEQTR-HVTTADLK 121
Query: 188 WLPNGSELPLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPMLDITIARLGPGQEI 247
SS PR S +D E+ DI I +L GQE+
Sbjct: 122 ------------------SSDPRVVPVTSRHKDDTNEYGETE-----DILIVKLRKGQEV 158
Query: 248 ELEAHAVKGIGKTHAKWSPVATAWYRMLPE 277
+ A+A KG GK HAKW+P + P+
Sbjct: 159 KARAYAKKGFGKEHAKWNPTCGVAFEYDPD 188
>gi|288931228|ref|YP_003435288.1| RNA polymerase insert [Ferroglobus placidus DSM 10642]
gi|288893476|gb|ADC65013.1| RNA polymerase insert [Ferroglobus placidus DSM 10642]
Length = 262
Score = 98.6 bits (244), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 77/258 (29%), Positives = 125/258 (48%), Gaps = 47/258 (18%)
Query: 76 FRVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAH 135
+VE++ + ++F L D ANA+RR + + +PT+A++ V NTS++ DE++AH
Sbjct: 1 MKVEILSEEELKIKFILKDSDYVFANAWRRAMKSLVPTLAVDYVDFYLNTSLLYDEIIAH 60
Query: 136 RLGLIPIIVDPRLFEYMSENDTSNEKNTIVFKLHVLCERGGPRLTVKTNELKWLPNGSEL 195
R+GLIP+ D + F+ +CE G PN ++
Sbjct: 61 RIGLIPLKTDLERYN---------------FQDKCVCEGEG------------CPN-CQV 92
Query: 196 PLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPMLD-ITIARLGPGQEIELEAHAV 254
L + P+T S DL+P+ + ++P+ D I I L GQ++ LEA A
Sbjct: 93 SLRLNVEG-----PKTV----YSGDLIPD--DPEVKPVYDNIPIVELYEGQQLMLEAVAR 141
Query: 255 KGIGKTHAKWSPVATAWYRMLPEIVLLEDVEDEDAEKLVKTCPVNVFDIEDIGSGKKRAT 314
G GK HAK+ PV+ +Y+++P I + ED K V CP NV + + +
Sbjct: 142 LGTGKEHAKFQPVSICYYKIIPRIEITEDC--NLCMKCVDACPRNV-----LKNDNGKVV 194
Query: 315 VAQPRACTLCRECLRCGE 332
V C++CR+C+R E
Sbjct: 195 VENVLECSMCRDCVRVCE 212
>gi|346471307|gb|AEO35498.1| hypothetical protein [Amblyomma maculatum]
Length = 274
Score = 98.6 bits (244), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 67/210 (31%), Positives = 102/210 (48%), Gaps = 28/210 (13%)
Query: 72 FCNNFRVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDE 131
+ N V + LT ++++F + D ++AN+ RR+ IAE PT+AI+ V + N++V+ DE
Sbjct: 3 YANQPSVHISELTDENVKFFVEDTDLSVANSIRRVFIAETPTLAIDWVQLEANSTVLHDE 62
Query: 132 VLAHRLGLIPIIVDPRLFEYMSENDTSNE----KNTIVFKLHVLCERGGPRLTVKTNELK 187
+AHRLGLIP+ D + + D + + ++ F L V C R V T +LK
Sbjct: 63 FIAHRLGLIPLTSDEIVDKMQYSRDCTCADFCTECSVEFTLDVKCLDEQTR-HVTTADLK 121
Query: 188 WLPNGSELPLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPMLDITIARLGPGQEI 247
SS PR S +D E+ DI I +L GQE+
Sbjct: 122 ------------------SSDPRVVPVTSRHKDDTNEYGETE-----DILIVKLRKGQEV 158
Query: 248 ELEAHAVKGIGKTHAKWSPVATAWYRMLPE 277
+ A+A KG GK HAKW+P + P+
Sbjct: 159 KARAYAKKGFGKEHAKWNPTCGVAFEYDPD 188
>gi|357630064|gb|EHJ78455.1| DNA-directed RNA polymerase II polypeptide [Danaus plexippus]
Length = 275
Score = 98.2 bits (243), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 68/213 (31%), Positives = 104/213 (48%), Gaps = 27/213 (12%)
Query: 72 FCNNFRVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDE 131
+ N V + LT D+++F + + ++AN+ RR+ IAE PTMAI+ V + N++V+ DE
Sbjct: 3 YANQPSVHITELTDDNVKFVVEDTELSVANSMRRVFIAETPTMAIDWVQLEANSTVLSDE 62
Query: 132 VLAHRLGLIPIIVDPRLFEYMSENDTSNE----KNTIVFKLHVLCERGGPRLTVKTNELK 187
LAHR+GLIP+I D + + D + ++ F L V C G V T +LK
Sbjct: 63 FLAHRIGLIPLISDDVVDKIRYSRDCMCADFCTECSVEFTLDVKC-TGDQTRHVTTADLK 121
Query: 188 WLPNGSELPLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPMLDITIARLGPGQEI 247
S+P P T Q E +I I +L GQE+
Sbjct: 122 --------------SSDPRVVPVTSRHRDEDQADYGELD--------EILIIKLRKGQEL 159
Query: 248 ELEAHAVKGIGKTHAKWSPVATAWYRMLPEIVL 280
+L A+A KG GK HAKW+P + + P+ ++
Sbjct: 160 KLRAYAKKGFGKEHAKWNPTSGVCFEYDPDNIM 192
>gi|340372125|ref|XP_003384595.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB3-like
[Amphimedon queenslandica]
Length = 274
Score = 98.2 bits (243), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 64/215 (29%), Positives = 105/215 (48%), Gaps = 31/215 (14%)
Query: 72 FCNNFRVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDE 131
+ N V+V +T ++++F + D ++ANA RRI IAE+PT+AI+ + + N++V+ DE
Sbjct: 3 YAKNPLVKVSEITDENVKFIIERTDLSMANALRRIFIAEVPTLAIDWIHLIANSTVLHDE 62
Query: 132 VLAHRLGLIPIIVDPRLFEYMSENDTSNEKNTIVFKLHVLCERGGPRLTVKTNELKWLPN 191
+AHR+GL+P+ D + + + + C P +
Sbjct: 63 FIAHRIGLVPLTSDGTV-------------DKMQYSRECTCNDFCPMCAI---------- 99
Query: 192 GSELPLETKPDSNPSSKPRTYTSFSSSQDLLP------EFSNNPIRPMLDITIARLGPGQ 245
E L+ K + + T SS+Q ++P E + DI I +L GQ
Sbjct: 100 --EYTLDVKCNDESTRAVTTRDLLSSNQSVIPVTSMVRESDTSDYGLTDDILIVKLRKGQ 157
Query: 246 EIELEAHAVKGIGKTHAKWSPVATAWYRMLPEIVL 280
E++L+A+A KG GK HAKWSP A + P+ L
Sbjct: 158 ELKLKAYATKGFGKEHAKWSPAAGISFEYDPDNAL 192
>gi|449018304|dbj|BAM81706.1| RNA polymerase II third large subunit [Cyanidioschyzon merolae
strain 10D]
Length = 533
Score = 98.2 bits (243), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 72/223 (32%), Positives = 106/223 (47%), Gaps = 26/223 (11%)
Query: 77 RVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHR 136
++ + RL + +F L D ++ANA RR +IA +PTM+I+ V I N S + DE +AHR
Sbjct: 29 KLRLTRLAATECDFTLSDTDISVANALRRAMIASVPTMSIDLVTIYVNDSPLHDEFVAHR 88
Query: 137 LGLIPIIVD-PRLFEYMSEND----------------TSNEKNTIVFKLHVLCERGG--P 177
LGL+P+ D F Y + D T+ EK ++ + L V C G
Sbjct: 89 LGLVPLRSDTAEYFNYNRDCDCTQSRIAALSGNPMEATNCEKCSVEYILDVTCPPDGELE 148
Query: 178 RLTVKTNELKWLPNGSELPLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPMLDIT 237
+ V + L+ P + P + P +P +L P+ S + I
Sbjct: 149 EMNVTSRHLQMDPRYFDGPAYVRA-VVPIHRP------DQPWELAPDSSRDRTSADAGIV 201
Query: 238 IARLGPGQEIELEAHAVKGIGKTHAKWSPVATAWYRMLPEIVL 280
I +L GQ + + A KG G+ HAKWSPVA A YRM P + L
Sbjct: 202 ICKLRRGQRLYVRCIAKKGTGREHAKWSPVAAASYRMDPSVRL 244
>gi|157119713|ref|XP_001659470.1| DNA-directed RNA polymerase II subunit [Aedes aegypti]
gi|108875224|gb|EAT39449.1| AAEL008755-PA [Aedes aegypti]
Length = 275
Score = 98.2 bits (243), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 68/210 (32%), Positives = 103/210 (49%), Gaps = 26/210 (12%)
Query: 72 FCNNFRVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDE 131
+ N V + LT ++++F + D ++ N+ RR+ IAE PT+AI+ V + +NT+V+ DE
Sbjct: 3 YANQPSVTITELTDENVKFVVEDTDLSVTNSLRRVFIAETPTLAIDWVQLESNTTVLADE 62
Query: 132 VLAHRLGLIPIIVDPRLFEYMSENDTS----NEKNTIVFKLHVLCERGGPRLTVKTNELK 187
LAHR+GLIP+I D + D + + ++ F L V C R V T +LK
Sbjct: 63 FLAHRVGLIPLISDEVVERMQYSRDCTCLDFCTECSVEFTLDVKCNDEHTR-HVTTADLK 121
Query: 188 WLPNGSELPLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPMLDITIARLGPGQEI 247
SS PR S +D + N +I I +L GQE+
Sbjct: 122 ------------------SSDPRVLPVTSRHRD---DEDNEYGEGTDEILIIKLRKGQEL 160
Query: 248 ELEAHAVKGIGKTHAKWSPVATAWYRMLPE 277
+L A+A KG GK HAKW+P + P+
Sbjct: 161 KLRAYAKKGFGKEHAKWNPTCGVCFEYDPD 190
>gi|156551093|ref|XP_001603079.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB3-like
[Nasonia vitripennis]
Length = 276
Score = 97.8 bits (242), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 66/212 (31%), Positives = 101/212 (47%), Gaps = 31/212 (14%)
Query: 72 FCNNFRVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDE 131
+ N V + LT+++++F + + ++AN+ RR+ IAE PTMAI+ V I N++V+ DE
Sbjct: 3 YANQPTVHISELTEENIKFQVEDTELSVANSMRRVFIAETPTMAIDWVQIEANSTVLSDE 62
Query: 132 VLAHRLGLIPIIVDPRLFEYMSENDTSNEKNTIVFKLHVLCERGGPRLTVKTNELKWLPN 191
LAHR+G+IP+I D + + I + C P V
Sbjct: 63 FLAHRIGMIPLISDEVV-------------DRIQYTRDCQCMDFCPECCV---------- 99
Query: 192 GSELPLETKPDSNPSSKPRTYTSFSSSQDLLPEFSN------NPIRPMLDITIARLGPGQ 245
E L+ K + T SS Q ++P S N +I I +L GQ
Sbjct: 100 --EFTLDVKCSDETTRHVTTADLKSSEQRVVPVTSKHRDDDANEYGETDEILIVKLRKGQ 157
Query: 246 EIELEAHAVKGIGKTHAKWSPVATAWYRMLPE 277
E++L A+A KG GK HAKW+P A + P+
Sbjct: 158 ELKLRAYAKKGFGKEHAKWNPTAGVSFEYDPD 189
>gi|225714130|gb|ACO12911.1| DNA-directed RNA polymerase II subunit RPB3 [Lepeophtheirus
salmonis]
Length = 279
Score = 97.8 bits (242), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 67/213 (31%), Positives = 104/213 (48%), Gaps = 26/213 (12%)
Query: 72 FCNNFRVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDE 131
+ N + + LT+D ++F L D ++ANA RR++IAE P MAI+ V + +N++V+ DE
Sbjct: 3 YANQPSINITELTEDLVKFTLEDTDLSVANAIRRVMIAETPIMAIDWVQLESNSTVLSDE 62
Query: 132 VLAHRLGLIPIIVDPRLFEYMSENDTS----NEKNTIVFKLHVLCERGGPRLTVKTNELK 187
+AHRLG+IP+ D + D + + + F L V C R V + +LK
Sbjct: 63 FIAHRLGMIPLTSDDAVDSMQYSRDCTCTDFCRECAVEFTLDVKCHEETTR-NVTSADLK 121
Query: 188 WLPNGSELPLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPMLDITIARLGPGQEI 247
SS P+ S +Q+ E + DI I +L GQE+
Sbjct: 122 ------------------SSDPKVIPVTSRNQE---EDGHEYGNENDDILIVKLRKGQEL 160
Query: 248 ELEAHAVKGIGKTHAKWSPVATAWYRMLPEIVL 280
++ A+A KG K HAKW+P A + P+ L
Sbjct: 161 KVRAYAKKGFAKEHAKWNPTAGVSFEYDPDNAL 193
>gi|294495898|ref|YP_003542391.1| DNA-directed RNA polymerase, subunit D [Methanohalophilus mahii DSM
5219]
gi|292666897|gb|ADE36746.1| DNA-directed RNA polymerase, subunit D [Methanohalophilus mahii DSM
5219]
Length = 266
Score = 97.8 bits (242), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 78/256 (30%), Positives = 122/256 (47%), Gaps = 51/256 (19%)
Query: 78 VEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRL 137
++++ L+ F L +DAA AN RR ++A++PT+AI++V I NNTSV+ DE +A RL
Sbjct: 3 IDILELSDRSARFILSDVDAAFANGLRRAMLADVPTLAIDEVNIYNNTSVLYDEQIALRL 62
Query: 138 GLIPIIVDPRLFEYMSENDTSNEKNTIVFKLHVLCERGGPRLTVKTNELKWLPNGSELPL 197
L+P++ +F + ++ + CE G P TV L +
Sbjct: 63 ALVPLVT---IFNEFTPHEECS------------CEEGCPACTVSLT----------LSV 97
Query: 198 ETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPMLD--ITIARLGPGQEIELEAHAVK 255
E D + + Y S DL+ S +P D I + +L GQ++ LE A
Sbjct: 98 EAPMDEDKT----VY-----SGDLV---SADPKIKAADSNIAVVKLKGGQQLVLEGIAKM 145
Query: 256 GIGKTHAKWSPVATAWYRMLPEIVLLEDVEDED-AEKLVKTCPVNVFDIEDIGSGKKRAT 314
G G HAKW Y+ +P I ++E D EK V CP ++ + GK+ A
Sbjct: 146 GYGHDHAKWQAGVACGYKNVPVI----EIEGCDLCEKCVSACPRDILTL-----GKESAE 196
Query: 315 VAQPRA--CTLCRECL 328
V R C+LC++C+
Sbjct: 197 VVDDRLLNCSLCKQCV 212
>gi|449546952|gb|EMD37921.1| hypothetical protein CERSUDRAFT_50160 [Ceriporiopsis subvermispora
B]
Length = 283
Score = 97.8 bits (242), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 65/205 (31%), Positives = 106/205 (51%), Gaps = 19/205 (9%)
Query: 81 IRLTKDD-MEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRLGL 139
IR K D + F L +D A+AN+FRR+++A+LPT+AI+ V I NT+V+ DE +AHRLG+
Sbjct: 13 IRDQKSDRVNFVLENVDLAVANSFRRVMMADLPTIAIDLVEIETNTTVLPDEFIAHRLGM 72
Query: 140 IPII---VDPRLFEYMSENDTSN-EKNTIVFKLHVLCERGGPRLTVKTNELKWLPNGSEL 195
+P+ D + TSN E ++ L+V C + + +N L+ +P G +
Sbjct: 73 VPLASKNCDEAMRYTRDCTCTSNCEYCSVTLSLNVACGEDATTMDITSNHLEVIPGGGQG 132
Query: 196 PLETKPDSNP----SSKPRTYTSFSSSQDLLPEFSNNPIRPMLDITIARLGPGQEIELEA 251
D+ S +P+ + P ++P P + + ++ GQE++L+
Sbjct: 133 GYWDAGDAEGGEELSKRPKNFGH--------PVGKDDPNVP--PVLLCKIRKGQELKLKC 182
Query: 252 HAVKGIGKTHAKWSPVATAWYRMLP 276
A KG K HAKWSP + + P
Sbjct: 183 IAKKGTAKEHAKWSPCSAVAFEYDP 207
>gi|124486064|ref|YP_001030680.1| DNA-directed RNA polymerase subunit D [Methanocorpusculum labreanum
Z]
gi|124363605|gb|ABN07413.1| DNA-directed RNA polymerase, subunit D [Methanocorpusculum
labreanum Z]
Length = 275
Score = 97.8 bits (242), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 80/250 (32%), Positives = 116/250 (46%), Gaps = 47/250 (18%)
Query: 82 RLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRLGLIP 141
RL F + G A ANA RR +I E+PT+AIE + I +NTSV+ DE+LAHRLGLIP
Sbjct: 7 RLDDSVARFTIHGATPAFANALRRSMIGEVPTLAIEDIRIYDNTSVLFDEMLAHRLGLIP 66
Query: 142 IIVDPRLFEYMSENDTSNE---KNTIVFKLHVLCERGGPRLTVKTNELKWLPNGSELPLE 198
I D + SE E T++F L V GP++ V + +L
Sbjct: 67 IKTDLSQYVPRSECSCGGEGCPHCTVMFTLSV----EGPKM-VTSGDL------------ 109
Query: 199 TKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPMLDITIARLGPGQEIELEAHAVKGIG 258
S ++++P +N P I +L Q++ LEA A G
Sbjct: 110 ----------------ISMDENVVPVHNNIP--------IVKLWENQKVVLEAVAEVNYG 145
Query: 259 KTHAKWSPVATAWYRMLPEIVLLEDVEDEDAEKLVKTCPVNVFDI-EDIGSGKKRATVAQ 317
K HAKW P Y P ++ ++D D K V CP +V ++ +D S + ++
Sbjct: 146 KEHAKWQPTLACGYSEYP-VITIKDTCD-GCGKCVAECPRDVLELTKDTVSIRVVNGESK 203
Query: 318 PRACTLCREC 327
+ C+LCR C
Sbjct: 204 EKDCSLCRLC 213
>gi|391329125|ref|XP_003739027.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB3-like
[Metaseiulus occidentalis]
Length = 277
Score = 97.8 bits (242), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 68/211 (32%), Positives = 103/211 (48%), Gaps = 30/211 (14%)
Query: 72 FCNNFRVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDE 131
+ N RV + L+ ++++F L D ++AN+ RR++IAE PTMAI+ V + N+SV+ DE
Sbjct: 3 YANQPRVTITDLSNENVKFVLEDTDLSVANSIRRVMIAETPTMAIDWVQLEANSSVLHDE 62
Query: 132 VLAHRLGLIPIIVDPRLFEYMSENDTSN-----EKNTIVFKLHVLCERGGPRLTVKTNEL 186
+AHRLGLIP+ + + E+M N + ++ F L V C R V T +L
Sbjct: 63 FIAHRLGLIPLTSE-EIVEHMQYNRDCSCVDFCTDCSVEFILDVKCTDDATR-HVTTADL 120
Query: 187 KWLPNGSELPLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPMLDITIARLGPGQE 246
K S+ R S +D E+ DI I +L GQE
Sbjct: 121 K------------------SADIRCVPVTSKRRDDTAEYGQEE-----DILIVKLRKGQE 157
Query: 247 IELEAHAVKGIGKTHAKWSPVATAWYRMLPE 277
++ +A KG GK HAKW+P + P+
Sbjct: 158 VKAICYARKGFGKEHAKWNPTCGVAFEYDPD 188
>gi|312083749|ref|XP_003143992.1| DNA-directed RNA polymerase II polypeptide [Loa loa]
gi|307760845|gb|EFO20079.1| RNA polymerase Rpb3/Rpb11 dimerization domain-containing protein
[Loa loa]
Length = 275
Score = 97.8 bits (242), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 70/219 (31%), Positives = 105/219 (47%), Gaps = 31/219 (14%)
Query: 72 FCNNFRVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDE 131
+ N V + L + + F L D ++AN+ RRI +AE+PTMAI+ V I +NTSV+ DE
Sbjct: 3 YANQPHVAITALNDEIVRFVLEDTDLSVANSLRRIFMAEVPTMAIDWVQIESNTSVLHDE 62
Query: 132 VLAHRLGLIPI----IVDPRLFEYMSENDTSNEKNTIVFKLHVLCERGGPRLTVKTNELK 187
+AHRLGLIP+ +VD F + + + +L V C+ G R V T +L+
Sbjct: 63 FIAHRLGLIPLTSDSVVDQMQFSRDCQCTEFCQFCAVEMRLRVRCDDEGIR-AVTTADLE 121
Query: 188 WLPNGSELPLETKPDSNPSS--KPRTYTSFSSSQDLLPEFSNNPIRPMLDITIARLGPGQ 245
+ PD P+ R + S+ D DI I +L GQ
Sbjct: 122 ----------TSNPDVAPACGVHIRNRNAEESASD--------------DILIVKLRKGQ 157
Query: 246 EIELEAHAVKGIGKTHAKWSPVATAWYRMLPEIVLLEDV 284
+++++ A KG GK HAKW+P + P+ L V
Sbjct: 158 DVDIKCIAKKGFGKEHAKWNPTCCVSFEYDPDNALRHTV 196
>gi|146092793|ref|XP_001466520.1| DNA-directed RNA polymerase I-like protein [Leishmania infantum
JPCM5]
gi|398018535|ref|XP_003862432.1| DNA-directed RNA polymerase I-like protein [Leishmania donovani]
gi|134070883|emb|CAM69559.1| DNA-directed RNA polymerase I-like protein [Leishmania infantum
JPCM5]
gi|322500662|emb|CBZ35739.1| DNA-directed RNA polymerase I-like protein [Leishmania donovani]
Length = 337
Score = 97.8 bits (242), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 80/267 (29%), Positives = 118/267 (44%), Gaps = 51/267 (19%)
Query: 76 FRVEVIRLTKDD------MEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQ 129
++E++ K++ + F L +D++ ANA RR+++AE+PT+AIE V I NTSV+
Sbjct: 1 MKLEIVECVKNEHAAGETLTFQLSEVDSSFANALRRVMLAEIPTLAIEYVTIRQNTSVLP 60
Query: 130 DEVLAHRLGLIPIIVDPRLFEYMSENDTSNEKNTIVFKLHVLCERGGPRLTVKTNELKWL 189
DE++AHRLGL+P+ S + + F C G T LK
Sbjct: 61 DEMIAHRLGLVPLF--------------SEKAKRLNFPQDCGCGGSGCPDCQITGSLKV- 105
Query: 190 PNGSELPLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPML----DITIARLGPGQ 245
P ++ D L + + + P+ I + LG Q
Sbjct: 106 ----------------QCPPNQHSKQVFIGDSL-QIDDAEVYPVSAEEHGIWLVTLGRSQ 148
Query: 246 EIELEAHAVKGIGKTHAKWSPVATAWYRMLPEIVL----LEDVEDEDAEKLVKTCPVNVF 301
++L K I KTHAK+ PVAT R PEI+L + + A + V CP NVF
Sbjct: 149 VLDLHVVIRKNIAKTHAKFMPVATVAMRYAPEIILNPNGFQTLGKAKAREWVARCPRNVF 208
Query: 302 D-IEDIGSGKKRATVAQPRACTLCREC 327
+E G + V AC CREC
Sbjct: 209 RFVERTG----QVEVQDEDACIFCREC 231
>gi|58391045|ref|XP_318245.2| AGAP010321-PA [Anopheles gambiae str. PEST]
gi|55236782|gb|EAA13388.2| AGAP010321-PA [Anopheles gambiae str. PEST]
Length = 273
Score = 97.8 bits (242), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 71/211 (33%), Positives = 108/211 (51%), Gaps = 28/211 (13%)
Query: 72 FCNNFRVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDE 131
+ N V + LT ++++F + + ++AN+ RR+ IAE PT+AI+ V + +NT+V+ DE
Sbjct: 3 YANQPSVTISELTDENVKFIVEDTELSVANSLRRVFIAETPTLAIDWVQLESNTTVLADE 62
Query: 132 VLAHRLGLIPIIVDPRL--FEYMSEN---DTSNEKNTIVFKLHVLCERGGPRLTVKTNEL 186
LAHR+GLIP+I D + +Y + D NE ++ F L V C R V T +L
Sbjct: 63 FLAHRVGLIPLISDEVVDRMQYSRDCPCLDFCNE-CSVEFTLDVKCNEEHTR-HVTTADL 120
Query: 187 KWLPNGSELPLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPMLDITIARLGPGQE 246
K SS PR S +D + N +I I +L GQE
Sbjct: 121 K------------------SSDPRVLPVTSRHRD---DEDNEYGEGTDEILIIKLRKGQE 159
Query: 247 IELEAHAVKGIGKTHAKWSPVATAWYRMLPE 277
++L+A+A KG GK HAKW+P + P+
Sbjct: 160 LKLKAYAKKGFGKEHAKWNPTCGVSFEYDPD 190
>gi|353235564|emb|CCA67575.1| related to RPB3-DNA-directed RNA polymerase II chain
[Piriformospora indica DSM 11827]
Length = 336
Score = 97.4 bits (241), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 69/213 (32%), Positives = 100/213 (46%), Gaps = 32/213 (15%)
Query: 75 NFRVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLA 134
N V + L +D F L G++ AN+FRR ++A++PT+AI+ V+ NT+V+ DE +A
Sbjct: 2 NPNVRIRELQRDKCNFVLSGVNLGFANSFRRTMMADIPTVAIDMVVFEVNTTVLPDEFIA 61
Query: 135 HRLGLIPIIVDPRLFEYMSENDTSNEKN----TIVFKLHVLCERGGPRLTVKTNELK--- 187
HRLG+IP+I D E +V LHV C+ G + + ++ L+
Sbjct: 62 HRLGMIPLISTNCDEGMRYTRDCDCELGCPLCMVVLTLHVRCDMPGTTMNITSDHLQIQS 121
Query: 188 ----WLPNGSELPLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPMLDITIARLGP 243
W G EL + P SK R F+ +P I IA L
Sbjct: 122 GGDAW--GGEELTKRGEDFGLPVSKSRG-------------FNGHP------ILIASLRK 160
Query: 244 GQEIELEAHAVKGIGKTHAKWSPVATAWYRMLP 276
GQE+++ A KGI K HAKWSP + P
Sbjct: 161 GQELKIRCEAKKGIAKDHAKWSPCTALGFEYDP 193
>gi|2829844|sp|P97760.1|RPB3_MOUSE RecName: Full=DNA-directed RNA polymerase II subunit RPB3;
Short=RNA polymerase II subunit 3; Short=RNA polymerase
II subunit B3; AltName: Full=DNA-directed RNA polymerase
II 33 kDa polypeptide; Short=RPB33; AltName:
Full=DNA-directed RNA polymerase II subunit C; AltName:
Full=RPB31
gi|1850789|dbj|BAA12205.1| the third largest RNA polymerase II subunit [Mus musculus]
Length = 275
Score = 97.4 bits (241), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 66/210 (31%), Positives = 101/210 (48%), Gaps = 27/210 (12%)
Query: 72 FCNNFRVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDE 131
+ N V + LT+++++F + D A+AN+ RR+ IAE+P +AI+ V I N+SV+ DE
Sbjct: 3 YANQPTVRITELTEENVKFIIENTDLAVANSIRRVFIAEVPIIAIDWVQIDGNSSVLHDE 62
Query: 132 VLAHRLGLIPIIVDPRLFEYMSENDTSNE----KNTIVFKLHVLCERGGPRLTVKTNELK 187
+AHRLGLIP+ D + + D + E + ++ F L V C R + +
Sbjct: 63 FIAHRLGLIPLTSDDIVDKLQYSRDCTCEEFCPECSVEFTLDVRCNEDQTRHVTSRDLI- 121
Query: 188 WLPNGSELPLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPMLDITIARLGPGQEI 247
S+ PR S ++D P N DI I +L GQE+
Sbjct: 122 ------------------SNSPRVIPVTSRNRDNDP----NDYVEQDDILIVKLRKGQEL 159
Query: 248 ELEAHAVKGIGKTHAKWSPVATAWYRMLPE 277
L A+ K GK HAKW+P A + P+
Sbjct: 160 RLRAYVKKRSGKEHAKWNPTAGVAFEYDPD 189
>gi|332796346|ref|YP_004457846.1| RNA polymerase D subunit [Acidianus hospitalis W1]
gi|332694081|gb|AEE93548.1| Archaeal RNA polymerase D subunit [Acidianus hospitalis W1]
Length = 260
Score = 97.4 bits (241), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 77/274 (28%), Positives = 119/274 (43%), Gaps = 52/274 (18%)
Query: 78 VEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRL 137
++VI+ + + L G NA RR + +P MA++ V I N S + DE+LAHRL
Sbjct: 2 IDVIKKEGNFISLSLDGYPLEFVNAIRRACMLYVPVMAVDDVYIIENNSPLYDEILAHRL 61
Query: 138 GLIPIIVDPRLFEYMSENDTSNEK---NTIVFKLHVLCERGGPRLTVKTNELKWLPNGSE 194
GLIP D + Y + +N + + K+++ E + V + ++K
Sbjct: 62 GLIPFSSDEAIDHYRPSEECANCQENCDGCFSKIYLDVEAKDSEVMVYSKDIK------- 114
Query: 195 LPLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPMLDITIARLGPGQEIELEAHAV 254
P P SK DI I LG Q++ LEA
Sbjct: 115 ---SDDPAVVPISK--------------------------DIPIVLLGKNQKVSLEARLR 145
Query: 255 KGIGKTHAKWSPVATAWYRMLPEIVLLEDVEDEDAEKLVKTCPVNVFDIEDIGSGKKRAT 314
G G HAK++PV A R P I +++D+ K + CP VF ++D +
Sbjct: 146 LGYGIEHAKFNPVTIAVLRYYPHI----ELKDDSCVKAAEVCPEKVFAVKD-----GKLV 196
Query: 315 VAQPRACTLCRECLRCGEEWEKRVSIRRVKDHFI 348
+A ACTLC ECLR + + + I V++ +I
Sbjct: 197 IANEIACTLCEECLR----YCEGIKISSVENKYI 226
>gi|312378871|gb|EFR25321.1| hypothetical protein AND_09454 [Anopheles darlingi]
Length = 273
Score = 97.4 bits (241), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 72/215 (33%), Positives = 107/215 (49%), Gaps = 36/215 (16%)
Query: 72 FCNNFRVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDE 131
+ N V + LT ++++F + + ++AN+ RR+ IAE PT+AI+ V + +NT+V+ DE
Sbjct: 3 YANQPSVTISELTDENVKFVVEDTELSVANSLRRVFIAETPTLAIDWVQLESNTTVLADE 62
Query: 132 VLAHRLGLIPIIVDPRL--FEYMSE-------NDTSNEKNTIVFKLHVLCERGGPRLTVK 182
LAHR+GLIP+I D + +Y + ND S E F L V C R V
Sbjct: 63 FLAHRVGLIPLISDEVVDRMQYSRDCPCLDFCNDCSVE-----FTLDVKCNEEHTR-HVT 116
Query: 183 TNELKWLPNGSELPLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPMLDITIARLG 242
T +LK SS PR S +D + N +I I +L
Sbjct: 117 TADLK------------------SSDPRVLPVTSRHRD---DEDNEYGEGTDEILIIKLR 155
Query: 243 PGQEIELEAHAVKGIGKTHAKWSPVATAWYRMLPE 277
GQE++L+A+A KG GK HAKW+P + P+
Sbjct: 156 KGQELKLKAYAKKGFGKEHAKWNPTCGVSFEYDPD 190
>gi|427778091|gb|JAA54497.1| Putative rna polymerase ii subunit polr2c/rpb3 [Rhipicephalus
pulchellus]
Length = 268
Score = 97.4 bits (241), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 64/206 (31%), Positives = 98/206 (47%), Gaps = 26/206 (12%)
Query: 72 FCNNFRVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDE 131
+ N V + LT ++++F + D ++AN+ RR+ IAE PT+AI+ V + N++V+ DE
Sbjct: 3 YANQPSVHISELTDENVKFFVEDTDLSVANSLRRVFIAETPTLAIDWVQLEANSTVLHDE 62
Query: 132 VLAHRLGLIPIIVDPRLFEYMSENDTSNEKNTIVFKLHVLCERGGPRLTVKTNELKWLPN 191
+AHRLGLIP+ D + + D + + L E+ V T +LK
Sbjct: 63 FIAHRLGLIPLTSDEIVDKMQYSRDCTCADXXXTLDVKCLDEQTR---HVTTADLK---- 115
Query: 192 GSELPLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPMLDITIARLGPGQEIELEA 251
SS PR S +D E+ DI I +L GQE++ A
Sbjct: 116 --------------SSDPRVVPVTSRHKDDTNEYGETE-----DILIVKLRKGQEVKARA 156
Query: 252 HAVKGIGKTHAKWSPVATAWYRMLPE 277
+A KG GK HAKW+P + P+
Sbjct: 157 YAKKGFGKEHAKWNPTCGVAFEYDPD 182
>gi|168029877|ref|XP_001767451.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162681347|gb|EDQ67775.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 385
Score = 97.1 bits (240), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 75/207 (36%), Positives = 107/207 (51%), Gaps = 32/207 (15%)
Query: 84 TKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRLGLIPII 143
+++ + F L D ++AN+ RR ++ E+PT+A + V I N+SV+ DE +AHRLGLIP+
Sbjct: 34 SRNVLRFKLENTDVSMANSLRRCMMVEVPTLAFDLVEIEMNSSVLTDEFIAHRLGLIPLT 93
Query: 144 VDPRLFE--YMSENDT-----SNEKNTIVFKLHVLCERGGPRLTVKTNELKWLPNGSELP 196
D R E + SE D+ S + T+ F L V + V +LK N + +P
Sbjct: 94 SD-RAMEMVFPSECDSCPGDRSCQNCTVEFLLSVKATEDRIK-DVTQRDLKS-SNDAVVP 150
Query: 197 LETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPMLDITIARLGPGQEIELEAHAVKG 256
+E D Q +L E +DI IA+L GQEI L A A KG
Sbjct: 151 VEIDVD---------------KQGVLEECK-------MDICIAKLYKGQEITLRALAKKG 188
Query: 257 IGKTHAKWSPVATAWYRMLPEIVLLED 283
+G HAKWSPVAT + PEI + E+
Sbjct: 189 MGSLHAKWSPVATVTFHHEPEIYINEE 215
>gi|159115523|ref|XP_001707984.1| DNA-directed RNA polymerase RPB3 [Giardia lamblia ATCC 50803]
gi|21842208|gb|AAM77734.1|AF510642_1 RNA polymerase II subunit Rpb3 [Giardia intestinalis]
gi|157436093|gb|EDO80310.1| DNA-directed RNA polymerase RPB3 [Giardia lamblia ATCC 50803]
Length = 326
Score = 96.7 bits (239), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 71/263 (26%), Positives = 125/263 (47%), Gaps = 33/263 (12%)
Query: 75 NFRVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLA 134
N ++++ T +E ++ G+D + N RR + A++PT+AI+ V +N++ + +E +A
Sbjct: 2 NPSIKILSKTDLKLELEISGVDISYVNGLRRAIYADVPTLAIDIVKFLDNSTTLTEEFIA 61
Query: 135 HRLGLIPIIVDPRLFEYMSENDTSNEKNTIVFKLHVLCERGGPRLTVKTNELKWLPNGSE 194
HRLGLIP+ L +S T +E+++ + +G ++ + +++ + +
Sbjct: 62 HRLGLIPLRTAGSL-SAISYWYTCDEEHSTEIECRECTFKGTLNISNDSTKIRVVTDK-- 118
Query: 195 LPLETKPDSNPSSKPRTY--TSFSSSQDLLPEFSNNPIRPMLDITIARLGPGQEIELEAH 252
+ K D S Y +SF +++ P P+L +L PG+ I +
Sbjct: 119 ---DIKFDHGGISTLSNYLESSFGAAE--------TPSIPIL-----KLAPGESINALLY 162
Query: 253 AVKGIGKTHAKWSPVATAWYRMLPEIVLLEDVE-------DEDAEKLVKTCPVNVFDIED 305
A K GK HAKW P A R L I+L ++ E D + +TCP NVF IE+
Sbjct: 163 ARKDRGKIHAKWCPAACVVLRPLARIILCDEFERLPQQHNDVARTYISETCPRNVFTIEN 222
Query: 306 IGSGKKRATVAQPRACTLCRECL 328
+R V +C C +C
Sbjct: 223 -----RRVVVKDSNSCIFCNDCF 240
>gi|124507008|ref|XP_001352101.1| DNA-directed RNA polymerase II, putative [Plasmodium falciparum
3D7]
gi|23505130|emb|CAD51912.1| DNA-directed RNA polymerase II, putative [Plasmodium falciparum
3D7]
Length = 335
Score = 96.7 bits (239), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 67/217 (30%), Positives = 111/217 (51%), Gaps = 29/217 (13%)
Query: 74 NNFRVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVL 133
N ++ + +LTKD++ F L ++ IANA RRI+++E+PT+AI+ V + NTS DE +
Sbjct: 9 NKHQINITKLTKDELYFTLYNSNSGIANALRRIMLSEIPTLAIDVVNVYENTSAFHDEFI 68
Query: 134 AHRLGLIPI---IVDPRLFEYMSENDTSNEKNTIVFKLHVLCERGGPRLTVKTNELKWLP 190
AHRLGLIPI V+ F + + K TI + + V C ++ V +++ L
Sbjct: 69 AHRLGLIPIDSRNVNNYEFREKCKCKETCSKCTIQYIIEVKCNHSN-KIDVSHYDIESLE 127
Query: 191 NGSELPLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPMLDITIARLGPGQEIELE 250
+ +P+ P N + S S++ +P I L Q + ++
Sbjct: 128 HEPNVPMPI-PHGNKN---------SVSENAIP--------------IVTLSKNQTLHMK 163
Query: 251 AHAVKGIGKTHAKWSPVATAWYRMLPEIVLLEDVEDE 287
A KGIGK HAKW P A YR+ ++++ ++ D+
Sbjct: 164 LIATKGIGKMHAKWIP-ANVSYRIDHKVLIKHNLIDK 199
>gi|410983639|ref|XP_003998146.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB3, partial
[Felis catus]
Length = 260
Score = 96.7 bits (239), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 65/199 (32%), Positives = 97/199 (48%), Gaps = 27/199 (13%)
Query: 86 DDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRLGLIPIIVD 145
++++F + D A+AN+ RR+ IAE+P +AI+ V I N+SV+ DE +AHRLGLIP+ D
Sbjct: 2 ENVKFIIENTDLAVANSIRRVFIAEVPIIAIDWVQIDANSSVLHDEFIAHRLGLIPLTSD 61
Query: 146 PRLFEYMSENDTSNE----KNTIVFKLHVLCERGGPRLTVKTNELKWLPNGSELPLETKP 201
+ + D + E + ++ F L V C R + +
Sbjct: 62 DIVDKLQYSRDCTCEEFCPECSVEFTLDVRCNEDQTRHVTSRDLI--------------- 106
Query: 202 DSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPMLDITIARLGPGQEIELEAHAVKGIGKTH 261
S+ PR S ++D P N DI I +L GQE+ L A+A KG GK H
Sbjct: 107 ----SNSPRVIPVTSRNRDNDP----NDYVEQDDILIVKLRKGQELRLRAYAKKGFGKEH 158
Query: 262 AKWSPVATAWYRMLPEIVL 280
AKW+P A + P+ L
Sbjct: 159 AKWNPTAGVAFEYDPDNAL 177
>gi|350400985|ref|XP_003486021.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB3-like [Bombus
impatiens]
Length = 276
Score = 96.3 bits (238), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 67/211 (31%), Positives = 106/211 (50%), Gaps = 29/211 (13%)
Query: 72 FCNNFRVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDE 131
+ N V + LT+++++F + + ++AN+ RR+ IAE PTMAI+ V + N++V+ DE
Sbjct: 3 YANQPSVHISDLTEENVKFQVEDTELSVANSMRRVFIAETPTMAIDWVQLEANSTVLSDE 62
Query: 132 VLAHRLGLIPIIVDPRL--FEYMSENDTSN--EKNTIVFKLHVLCERGGPRLTVKTNELK 187
LAHR+G+IP+I D + +Y + + + ++ F L V C R V T + K
Sbjct: 63 FLAHRIGMIPLISDDVVDRIQYTRDCQCMDFCPECSVEFTLDVKCTEDQTR-HVTTADFK 121
Query: 188 WLPNGSELPLETKPDSNPSSKPRTYTSFS-SSQDLLPEFSNNPIRPMLDITIARLGPGQE 246
SS PR S +D E+ +I I +L GQE
Sbjct: 122 ------------------SSDPRVLPVTSRHREDDASEYGETD-----EILIVKLRKGQE 158
Query: 247 IELEAHAVKGIGKTHAKWSPVATAWYRMLPE 277
++L A+A KG GK HAKW+P A + P+
Sbjct: 159 LKLRAYAKKGFGKEHAKWNPTAGVSFEYDPD 189
>gi|40645083|dbj|BAD06460.1| homologue of DNA-directed RNA polymerase II subunit [Antheraea
pernyi]
gi|40645085|dbj|BAD06461.1| homologue of DNA-directed RNA polymerase II subunit [Antheraea
pernyi]
Length = 275
Score = 96.3 bits (238), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 67/213 (31%), Positives = 103/213 (48%), Gaps = 27/213 (12%)
Query: 72 FCNNFRVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDE 131
+ N V + L D+++F + + ++AN+ RR+ IAE PTMAI+ + + N++V+ DE
Sbjct: 3 YANQPSVHITELNDDNVKFVVEDTELSVANSMRRVFIAETPTMAIDWIQLEANSTVLSDE 62
Query: 132 VLAHRLGLIPIIVDPRLFEYMSENDTS----NEKNTIVFKLHVLCERGGPRLTVKTNELK 187
LAHR+GLIP+I D + + D + ++ F L V C R V T +LK
Sbjct: 63 FLAHRIGLIPLISDDVVDKIRYSRDCMCADFCSECSVEFTLDVKCTDDQTR-HVTTADLK 121
Query: 188 WLPNGSELPLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPMLDITIARLGPGQEI 247
S+P P T Q E +I I +L GQE+
Sbjct: 122 --------------SSDPRVVPVTSRHRDEDQADYGETD--------EILIIKLRKGQEL 159
Query: 248 ELEAHAVKGIGKTHAKWSPVATAWYRMLPEIVL 280
+L A+A KG GK HAKW+P A + P+ ++
Sbjct: 160 KLRAYAKKGFGKEHAKWNPTAGVCFEYDPDNIM 192
>gi|367000601|ref|XP_003685036.1| hypothetical protein TPHA_0C04510 [Tetrapisispora phaffii CBS 4417]
gi|357523333|emb|CCE62602.1| hypothetical protein TPHA_0C04510 [Tetrapisispora phaffii CBS 4417]
Length = 310
Score = 96.3 bits (238), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 67/206 (32%), Positives = 103/206 (50%), Gaps = 36/206 (17%)
Query: 77 RVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHR 136
+V++ TKD+++F + +D A+ANAFRR++IAE+PT+AI+ V + +NT+V+ DE +AHR
Sbjct: 7 QVKIREATKDNVDFIVSNVDLAMANAFRRVMIAEIPTLAIDSVEVISNTTVLADEFIAHR 66
Query: 137 LGLIPI-IVDPRLFEYMSE--NDTSNEKNTIVFKLHVLCERGGPRLTVKTNELKWLPNGS 193
LGL+P+ D EY + + +K ++V L L
Sbjct: 67 LGLVPLQSADIEQLEYSRDCFCEDHCDKCSVVLTLQALG--------------------- 105
Query: 194 ELPLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPI---RPMLDITIARLGPGQEIELE 250
E++ +N SK S DLL +PI + + I +L GQE++
Sbjct: 106 ----ESESTTNVYSKDLVIVS-----DLLGRNIGHPIIQDKEGNGVLICKLRKGQELKFT 156
Query: 251 AHAVKGIGKTHAKWSPVATAWYRMLP 276
A KGI K HAKW P A + P
Sbjct: 157 CIAKKGIAKEHAKWGPAAAIEFEYDP 182
>gi|170581298|ref|XP_001895623.1| DNA-directed RNA polymerase II 33 kDa polypeptide [Brugia malayi]
gi|158597360|gb|EDP35528.1| DNA-directed RNA polymerase II 33 kDa polypeptide, putative [Brugia
malayi]
Length = 275
Score = 96.3 bits (238), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 68/213 (31%), Positives = 99/213 (46%), Gaps = 27/213 (12%)
Query: 72 FCNNFRVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDE 131
+ N V + L + + F L D ++AN+ RRI +AE+PTMAI+ V I +N+SV+ DE
Sbjct: 3 YANQPHVAITALNDEIVRFVLEDTDLSVANSLRRIFMAEVPTMAIDWVQIESNSSVLHDE 62
Query: 132 VLAHRLGLIPI----IVDPRLFEYMSENDTSNEKNTIVFKLHVLCERGGPRLTVKTNELK 187
+AHRLGLIP+ +VD F + + + +L V C+ G R +
Sbjct: 63 FIAHRLGLIPLTSDSVVDQMQFSRDCQCTEFCQFCAVEMRLRVRCDDEGIRAVTTAD--- 119
Query: 188 WLPNGSELPLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPMLDITIARLGPGQEI 247
LET SNP P + N DI I +L GQ+I
Sbjct: 120 ---------LET---SNPDVAPACGVHIRN--------RNAEENASDDILIVKLRKGQDI 159
Query: 248 ELEAHAVKGIGKTHAKWSPVATAWYRMLPEIVL 280
+++ A KG GK HAKW+P + P+ L
Sbjct: 160 DIKCIAKKGFGKEHAKWNPTCCVAFEYDPDNAL 192
>gi|449709854|gb|EMD49037.1| DNA-directed RNA polymerase II subunit, putative [Entamoeba
histolytica KU27]
Length = 283
Score = 96.3 bits (238), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 72/277 (25%), Positives = 120/277 (43%), Gaps = 50/277 (18%)
Query: 81 IRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRLGLI 140
+ ++ + F + D ++ N RR+++AE PT+AI+ V + N+S + DE +AHRLGLI
Sbjct: 15 VECKEEKLSFHIERTDTSMVNGLRRVIMAETPTIAIQLVRVYANSSYLCDEFIAHRLGLI 74
Query: 141 PIIVDPRLFEYMSENDTSNEKNTIVFKLHVLCERGGPRLTVKT-NELKWLPNGSELPLET 199
PI N ++T L + E +L V T N+L + + P+
Sbjct: 75 PI----------DSTQIHNFEDTDDAILELKEENNSNQLVVVTSNDLVSIGDKRVAPVNY 124
Query: 200 KPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPMLDITIARLGPGQEIELEAHAVKGIGK 259
K D +P I I +LGP Q I + + KG GK
Sbjct: 125 KNDVDP------------------------------IVITQLGPRQNIHMVCYVKKGTGK 154
Query: 260 THAKWSPVATAWYRMLPEIVLLED----VEDEDAEKLVKTCPVNVFDIEDIGSGKKRATV 315
HAKW+P ++ L +I + ++ + E + CP VFD +++G ++ +
Sbjct: 155 FHAKWNPTCQCVFQTLADIRINDEKMISLTPEQKRTFCEQCPQKVFDYQEVG---EKVFI 211
Query: 316 AQPRACTLCRECLRCGEEWEKR--VSIRRVKDHFICK 350
C C EC + +R V++ D F+ K
Sbjct: 212 RGEENCIFCNECTVYARDIGQRNLVTVTPKTDQFVFK 248
>gi|363752075|ref|XP_003646254.1| hypothetical protein Ecym_4382 [Eremothecium cymbalariae
DBVPG#7215]
gi|356889889|gb|AET39437.1| hypothetical protein Ecym_4382 [Eremothecium cymbalariae
DBVPG#7215]
Length = 311
Score = 96.3 bits (238), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 69/203 (33%), Positives = 104/203 (51%), Gaps = 30/203 (14%)
Query: 77 RVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHR 136
+V++ TKD+++F L +D ++AN+ RRI+IAE+PT+AI+ V I NTSV+ DE ++HR
Sbjct: 7 QVKIREATKDNVDFILSNVDLSLANSLRRIMIAEIPTLAIDSVEIETNTSVLADEFISHR 66
Query: 137 LGLIPIIVDPRLFEYMSENDTSNEKNTIVFKLHVLCERGGPRLTVKTNELKWLPNGSELP 196
LGLIP+ S + + +V+ CE R +V L G
Sbjct: 67 LGLIPL--------------QSKDIDQLVYCRDCYCEDHCDRCSVV---LTLQAVG---- 105
Query: 197 LETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPI---RPMLDITIARLGPGQEIELEAHA 253
E++ +N +K S DL + +PI + I + +L GQE+ L+ A
Sbjct: 106 -ESESTTNVYAKDLQIVS-----DLGGKNIGHPIIQDKEANGILVCKLRKGQELRLKCVA 159
Query: 254 VKGIGKTHAKWSPVATAWYRMLP 276
KGI K HAKWSP A + P
Sbjct: 160 KKGISKEHAKWSPAAAIEFEYDP 182
>gi|116754910|ref|YP_844028.1| RNA polymerase, insert [Methanosaeta thermophila PT]
gi|116666361|gb|ABK15388.1| DNA-directed RNA polymerase, subunit D [Methanosaeta thermophila
PT]
Length = 264
Score = 95.9 bits (237), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 87/273 (31%), Positives = 126/273 (46%), Gaps = 50/273 (18%)
Query: 78 VEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRL 137
VE+I L D + F L G+ A ANA RR IAE+P +AI+++ I NTSV+ DE +A RL
Sbjct: 3 VELIELRDDRVRFLLTGVTPAFANAIRRSCIAEVPKLAIDEISIYENTSVLFDEQIALRL 62
Query: 138 GLIPIIVDPRLFEYMSENDTSNEKNTIVFKLHVLCERGGPRLTVKTNELKWLPNGSELPL 197
GL+PI D +S T +E C+ GG + G
Sbjct: 63 GLVPIRADD-----LSVYSTPDE-----------CQCGGIGCPGCRIDFMLTAEG----- 101
Query: 198 ETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPMLD-ITIARLGPGQEIELEAHAVKG 256
P T S+D+ +FS+ +R D I + LG G+++ +E A
Sbjct: 102 -----------PATV----HSRDI--KFSDPSVRAAFDNIPLVVLGEGEKLVIEGFATLR 144
Query: 257 IGKTHAKWSPVATAWYRMLPEIVLLEDVEDEDAEKLVKTCPVNVFDIEDIGSGKKRATVA 316
GK HAKW Y+ LP I E + + VK CP V +++ S K R
Sbjct: 145 TGKEHAKWQAGTLCGYKNLPSI---EISGCNNCGRCVKVCPRGVLVLDENDSIKVRDIT- 200
Query: 317 QPRACTLCRECLRCGEEWEKR-VSIRRVKDHFI 348
C+LCR C+ EE ++R +S+ ++D FI
Sbjct: 201 ---ECSLCRLCV---EECDQRAISVVPLEDAFI 227
>gi|225707818|gb|ACO09755.1| DNA-directed RNA polymerase II 33 kDa polypeptide [Osmerus mordax]
Length = 275
Score = 95.9 bits (237), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 65/213 (30%), Positives = 102/213 (47%), Gaps = 27/213 (12%)
Query: 72 FCNNFRVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDE 131
+ N V++ L+ ++++F + D A+AN+ RR+ ++E+ T+AI+ + I N+SV+ DE
Sbjct: 3 YANQPTVKITELSDENVKFVIENTDLAVANSIRRVFMSEVATIAIDWIQIDANSSVLHDE 62
Query: 132 VLAHRLGLIPI----IVDPRLFEYMSENDTSNEKNTIVFKLHVLCERGGPRLTVKTNELK 187
+AHR+GLIP+ IVD + D + ++ L V C R + L
Sbjct: 63 FIAHRVGLIPLTSDDIVDKMQYSRDCTCDDFCPECSVELTLDVRCTEDQTRHVTSRDLL- 121
Query: 188 WLPNGSELPLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPMLDITIARLGPGQEI 247
S+ PR S S+D P N DI + +L GQE+
Sbjct: 122 ------------------SNNPRVIPVTSRSRDNDP----NDYVEQDDIILVKLRKGQEL 159
Query: 248 ELEAHAVKGIGKTHAKWSPVATAWYRMLPEIVL 280
L A+A KG GK HAKW+P A + P+ L
Sbjct: 160 RLRAYAKKGFGKEHAKWNPTAGVSFEYDPDNAL 192
>gi|66517558|ref|XP_624836.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB3-like [Apis
mellifera]
gi|380029804|ref|XP_003698555.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB3-like [Apis
florea]
Length = 276
Score = 95.9 bits (237), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 66/211 (31%), Positives = 106/211 (50%), Gaps = 29/211 (13%)
Query: 72 FCNNFRVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDE 131
+ N V + LT+++++F + + ++AN+ RR+ IAE PTMAI+ + + N++V+ DE
Sbjct: 3 YANQPSVHISDLTEENVKFQVEDTELSVANSMRRVFIAETPTMAIDWIQLEANSTVLSDE 62
Query: 132 VLAHRLGLIPIIVDPRL--FEYMSENDTSN--EKNTIVFKLHVLCERGGPRLTVKTNELK 187
LAHR+G+IP+I D + +Y + + + ++ F L V C R V T + K
Sbjct: 63 FLAHRIGMIPLISDDVVDRIQYTRDCQCMDFCPECSVEFTLDVKCTEDQTR-HVTTADFK 121
Query: 188 WLPNGSELPLETKPDSNPSSKPRTYTSFS-SSQDLLPEFSNNPIRPMLDITIARLGPGQE 246
SS PR S +D E+ +I I +L GQE
Sbjct: 122 ------------------SSDPRVLPVTSRHREDDASEYGETD-----EILIVKLRKGQE 158
Query: 247 IELEAHAVKGIGKTHAKWSPVATAWYRMLPE 277
++L A+A KG GK HAKW+P A + P+
Sbjct: 159 LKLRAYAKKGFGKEHAKWNPTAGVSFEYDPD 189
>gi|383848177|ref|XP_003699728.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB3-like
[Megachile rotundata]
Length = 276
Score = 95.9 bits (237), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 66/211 (31%), Positives = 106/211 (50%), Gaps = 29/211 (13%)
Query: 72 FCNNFRVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDE 131
+ N V + LT+++++F + + ++AN+ RR+ IAE PTMAI+ + + N++V+ DE
Sbjct: 3 YANQPSVHISDLTEENVKFQVEDTELSVANSMRRVFIAETPTMAIDWIQLEANSTVLSDE 62
Query: 132 VLAHRLGLIPIIVDPRL--FEYMSENDTSN--EKNTIVFKLHVLCERGGPRLTVKTNELK 187
LAHR+G+IP+I D + +Y + + + ++ F L V C R V T + K
Sbjct: 63 FLAHRIGMIPLISDDVVDRIQYTRDCQCMDFCPECSVEFTLDVKCTEDQTR-HVTTADFK 121
Query: 188 WLPNGSELPLETKPDSNPSSKPRTYTSFS-SSQDLLPEFSNNPIRPMLDITIARLGPGQE 246
SS PR S +D E+ +I I +L GQE
Sbjct: 122 ------------------SSDPRVLPVTSRHREDDASEYGETD-----EILIVKLRKGQE 158
Query: 247 IELEAHAVKGIGKTHAKWSPVATAWYRMLPE 277
++L A+A KG GK HAKW+P A + P+
Sbjct: 159 LKLRAYAKKGFGKEHAKWNPTAGVSFEYDPD 189
>gi|45187753|ref|NP_983976.1| ADL120Cp [Ashbya gossypii ATCC 10895]
gi|44982514|gb|AAS51800.1| ADL120Cp [Ashbya gossypii ATCC 10895]
gi|374107190|gb|AEY96098.1| FADL120Cp [Ashbya gossypii FDAG1]
Length = 311
Score = 95.9 bits (237), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 68/203 (33%), Positives = 105/203 (51%), Gaps = 30/203 (14%)
Query: 77 RVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHR 136
+V++ TKD+++F L +D ++AN+ RRI+IAE+PT+AI+ V I +NTSV+ DE ++HR
Sbjct: 7 QVKIREATKDNVDFILSNVDLSLANSLRRIMIAEIPTLAIDSVEIESNTSVLADEFISHR 66
Query: 137 LGLIPIIVDPRLFEYMSENDTSNEKNTIVFKLHVLCERGGPRLTVKTNELKWLPNGSELP 196
LGL+P+ S + + +V+ CE R +V L G
Sbjct: 67 LGLVPL--------------QSKDIDQLVYCRDCFCEDHCDRCSVL---LTLHAVG---- 105
Query: 197 LETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPI---RPMLDITIARLGPGQEIELEAHA 253
E++ +N +K S DL + +PI + + I +L GQE+ L+ A
Sbjct: 106 -ESESTTNVYAKDLQIVS-----DLGGKNIGHPIIQDKEANGVLICKLRKGQELRLKCVA 159
Query: 254 VKGIGKTHAKWSPVATAWYRMLP 276
KGI K HAKWSP A + P
Sbjct: 160 KKGIAKEHAKWSPAAAIEFEYDP 182
>gi|402590881|gb|EJW84811.1| RNA polymerase Rpb3/Rpb11 dimerization domain-containing protein
[Wuchereria bancrofti]
Length = 275
Score = 95.5 bits (236), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 68/217 (31%), Positives = 100/217 (46%), Gaps = 27/217 (12%)
Query: 72 FCNNFRVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDE 131
+ N V + L + + F L D ++AN+ RRI +AE+PTMA++ V I +N+SV+ DE
Sbjct: 3 YANQPHVAITALNDEIVRFVLEDTDLSVANSLRRIFMAEVPTMAVDWVQIESNSSVLHDE 62
Query: 132 VLAHRLGLIPI----IVDPRLFEYMSENDTSNEKNTIVFKLHVLCERGGPRLTVKTNELK 187
+AHRLGLIP+ +VD F + + + +L V C+ G R +
Sbjct: 63 FIAHRLGLIPLTSDSVVDQMQFSRDCQCTEFCQFCAVEMRLRVRCDDEGIRAVTTAD--- 119
Query: 188 WLPNGSELPLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPMLDITIARLGPGQEI 247
LET SNP P + N DI I +L GQ+I
Sbjct: 120 ---------LET---SNPDVAPACGVHIRN--------RNAEENASDDILIVKLRKGQDI 159
Query: 248 ELEAHAVKGIGKTHAKWSPVATAWYRMLPEIVLLEDV 284
+++ A KG GK HAKW+P + P+ L V
Sbjct: 160 DIKCIAKKGFGKEHAKWNPTCCVAFEYDPDNALRHTV 196
>gi|365992198|ref|XP_003672927.1| hypothetical protein NDAI_0L02000 [Naumovozyma dairenensis CBS 421]
gi|410730081|ref|XP_003671218.2| hypothetical protein NDAI_0G02000 [Naumovozyma dairenensis CBS 421]
gi|401780038|emb|CCD25975.2| hypothetical protein NDAI_0G02000 [Naumovozyma dairenensis CBS 421]
Length = 311
Score = 95.5 bits (236), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 68/203 (33%), Positives = 102/203 (50%), Gaps = 30/203 (14%)
Query: 77 RVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHR 136
+V++ TKD+++F L ID A+AN+FRR++IAE+PT+AI+ V I NT+V+ DE +AHR
Sbjct: 7 QVKIREATKDNVDFILSNIDLALANSFRRVMIAEIPTLAIDSVQIETNTTVLADEFIAHR 66
Query: 137 LGLIPIIVDPRLFEYMSENDTSNEKNTIVFKLHVLCERGGPRLTVKTNELKWLPNGSELP 196
LGLIP+ S + + + CE + +V L G
Sbjct: 67 LGLIPL--------------QSTDIEQLEYSRDCFCEDHCDKCSVV---LTLQAFG---- 105
Query: 197 LETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPI---RPMLDITIARLGPGQEIELEAHA 253
E++ +N +K S +LL +PI + + I +L GQE++L A
Sbjct: 106 -ESESTTNVYAKDLVIVS-----NLLGRNIGHPIIQDKENNGVLICKLRKGQELKLTCVA 159
Query: 254 VKGIGKTHAKWSPVATAWYRMLP 276
KGI K HAKW P A + P
Sbjct: 160 KKGIAKEHAKWGPAAAIEFEYDP 182
>gi|167386476|ref|XP_001737769.1| DNA-directed RNA polymerase subunit D [Entamoeba dispar SAW760]
gi|165899221|gb|EDR25860.1| DNA-directed RNA polymerase subunit D, putative [Entamoeba dispar
SAW760]
Length = 283
Score = 95.5 bits (236), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 71/277 (25%), Positives = 120/277 (43%), Gaps = 50/277 (18%)
Query: 81 IRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRLGLI 140
+ ++ + F + D ++ N RR+++AE PT+AI+ V + N+S + DE +AHRLGLI
Sbjct: 15 VECKEEKLSFHIERTDTSMVNGLRRVIMAETPTIAIQLVRVYANSSYLCDEFIAHRLGLI 74
Query: 141 PIIVDPRLFEYMSENDTSNEKNTIVFKLHVLCERGGPRLTVKT-NELKWLPNGSELPLET 199
PI N ++T L + E +L V T N+L + + P+
Sbjct: 75 PI----------DSTQIHNFEDTDDAILELKKENNSNQLVVVTSNDLVSIGDKRVAPVNY 124
Query: 200 KPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPMLDITIARLGPGQEIELEAHAVKGIGK 259
+ D +P I I +LGP Q I + + KG GK
Sbjct: 125 RNDVDP------------------------------IVITQLGPRQNIHMVCYVKKGTGK 154
Query: 260 THAKWSPVATAWYRMLPEIVLLED----VEDEDAEKLVKTCPVNVFDIEDIGSGKKRATV 315
HAKW+P ++ L +I + ++ + E + CP VFD +++G ++ +
Sbjct: 155 FHAKWNPTCQCVFQTLADIRINDEKMISLTPEQKRTFCEQCPQKVFDYQEVG---EKVFI 211
Query: 316 AQPRACTLCRECLRCGEEWEKR--VSIRRVKDHFICK 350
C C EC + +R V++ D F+ K
Sbjct: 212 RGDENCIFCNECTVYARDIGQRNLVTVTPKTDQFVFK 248
>gi|225716034|gb|ACO13863.1| DNA-directed RNA polymerase II subunit RPB3 [Esox lucius]
Length = 275
Score = 95.5 bits (236), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 65/213 (30%), Positives = 102/213 (47%), Gaps = 27/213 (12%)
Query: 72 FCNNFRVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDE 131
+ N V++ LT ++++F + D ++AN+ RR+ ++E+ T+AI+ + I N+SVI DE
Sbjct: 3 YANQPIVKITELTDENVKFVIENTDLSVANSIRRVFMSEVATIAIDWIQIDANSSVIHDE 62
Query: 132 VLAHRLGLIPI----IVDPRLFEYMSENDTSNEKNTIVFKLHVLCERGGPRLTVKTNELK 187
+AHR+GLIP+ +VD + D + ++ L V C R + L
Sbjct: 63 FIAHRVGLIPLTSDDVVDKMQYSRDCTCDDFCPECSVELTLDVRCTEDQTRHVTSRDLL- 121
Query: 188 WLPNGSELPLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPMLDITIARLGPGQEI 247
S+ PR S S+D P N DI + +L GQE+
Sbjct: 122 ------------------SNHPRVIPVTSKSRDNDP----NDYVEQDDILLVKLRKGQEL 159
Query: 248 ELEAHAVKGIGKTHAKWSPVATAWYRMLPEIVL 280
L A+A KG GK HAKW+P A + P+ L
Sbjct: 160 RLRAYAKKGFGKEHAKWNPTAGVSFEYDPDNAL 192
>gi|325958565|ref|YP_004290031.1| DNA-directed RNA polymerase subunit D [Methanobacterium sp. AL-21]
gi|325329997|gb|ADZ09059.1| DNA-directed RNA polymerase subunit D [Methanobacterium sp. AL-21]
Length = 262
Score = 95.5 bits (236), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 73/240 (30%), Positives = 107/240 (44%), Gaps = 43/240 (17%)
Query: 90 FDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRLGLIPIIVDPRLF 149
F + G+D A NA RRI E+PTMAIE V I N + I DE LAHRLGL+P+ D
Sbjct: 15 FAIEGVDDAFINAIRRISTVEVPTMAIETVEILKNDAKIFDEALAHRLGLVPLKTDLESM 74
Query: 150 EYMSENDTSNEKNTIVFKLHVLCERGGPRLTVKTNELKWLPNGSELPLETKPDSNPSSKP 209
S+ D + T L L + GP+ TV + +L+
Sbjct: 75 VLASDCDCEDYCPTCSVTL--LLKEKGPK-TVYSGDLQ---------------------- 109
Query: 210 RTYTSFSSSQDLLPEFSNNPIRPMLDITIARLGPGQEIELEAHAVKGIGKTHAKWSPVAT 269
S D++P P + +L GQE+EL A A GIG H+KW P T
Sbjct: 110 ------SQDPDVVPVHDTIP--------LLKLKEGQEVELIAVAKLGIGLEHSKWQPTTT 155
Query: 270 AWYRMLPEIVLLEDVEDEDAEKLVKTCPVNVFDIEDIGSGKKRATVAQPRACTLCRECLR 329
Y+ P+I + D + E CP V++ ++ + + + C++C+ C+R
Sbjct: 156 CAYKYYPKITIDSD-KCESCGLCASECPRAVYEFDEKANTLE---IVDIENCSMCKTCVR 211
>gi|241853662|ref|XP_002415909.1| RNA polymerase II, subunit POLR2C/RPB3, putative [Ixodes
scapularis]
gi|215510123|gb|EEC19576.1| RNA polymerase II, subunit POLR2C/RPB3, putative [Ixodes
scapularis]
Length = 274
Score = 95.5 bits (236), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 65/210 (30%), Positives = 102/210 (48%), Gaps = 28/210 (13%)
Query: 72 FCNNFRVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDE 131
+ N V + LT ++++F + D ++AN+ RR+ IAE+ T+AI+ V + N++V+ DE
Sbjct: 3 YANQPSVHISELTDENVKFFVEDTDLSVANSLRRVFIAEVATLAIDWVQLEANSTVLHDE 62
Query: 132 VLAHRLGLIPIIVDPRLFEYMSENDTSNE----KNTIVFKLHVLCERGGPRLTVKTNELK 187
+AHRLGLIP+ D + + D + + ++ F + V C R V T +LK
Sbjct: 63 FIAHRLGLIPLTSDEIVDKMQYSRDCTCADFCTECSVEFTIDVKCLDEQTR-HVTTADLK 121
Query: 188 WLPNGSELPLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPMLDITIARLGPGQEI 247
SS PR S +D E+ DI I +L GQE+
Sbjct: 122 ------------------SSDPRVVPVTSRHKDDTNEYGETD-----DILIVKLRKGQEV 158
Query: 248 ELEAHAVKGIGKTHAKWSPVATAWYRMLPE 277
+ A+A KG GK HAKW+P + P+
Sbjct: 159 KARAYAKKGFGKEHAKWNPTCGVAFEYDPD 188
>gi|307202125|gb|EFN81625.1| DNA-directed RNA polymerase II subunit RPB3 [Harpegnathos saltator]
Length = 276
Score = 95.5 bits (236), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 66/211 (31%), Positives = 106/211 (50%), Gaps = 29/211 (13%)
Query: 72 FCNNFRVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDE 131
+ N V + LT+++++F + + ++AN+ RR+ IAE PTMAI+ + + N++V+ DE
Sbjct: 3 YANQPSVHISDLTEENVKFQVEYTELSVANSMRRVFIAETPTMAIDWIQLEANSTVLSDE 62
Query: 132 VLAHRLGLIPIIVDPRL--FEYMSENDTSN--EKNTIVFKLHVLCERGGPRLTVKTNELK 187
LAHR+G+IP+I D + +Y + + + ++ F L V C R V T + K
Sbjct: 63 FLAHRIGMIPLISDDVVDRIQYTRDCQCMDFCPECSVEFTLDVKCTEDQTR-HVTTADFK 121
Query: 188 WLPNGSELPLETKPDSNPSSKPRTYTSFS-SSQDLLPEFSNNPIRPMLDITIARLGPGQE 246
SS PR S +D E+ +I I +L GQE
Sbjct: 122 ------------------SSDPRVLPVTSRHREDDASEYGETD-----EILIVKLRKGQE 158
Query: 247 IELEAHAVKGIGKTHAKWSPVATAWYRMLPE 277
++L A+A KG GK HAKW+P A + P+
Sbjct: 159 LKLRAYAKKGFGKEHAKWNPTAGVSFEYDPD 189
>gi|288560165|ref|YP_003423651.1| DNA-directed RNA polymerase subunit D RpoD [Methanobrevibacter
ruminantium M1]
gi|288542875|gb|ADC46759.1| DNA-directed RNA polymerase subunit D RpoD [Methanobrevibacter
ruminantium M1]
Length = 282
Score = 95.5 bits (236), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 81/279 (29%), Positives = 126/279 (45%), Gaps = 40/279 (14%)
Query: 78 VEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRL 137
++V + ++ M F + + NA RRI + +P +AIE V I N S + DEVLAHRL
Sbjct: 3 IDVKKQDENSMVFIVRDAEVPFINAIRRIAMMRVPKLAIEDVFIVKNDSAMFDEVLAHRL 62
Query: 138 GLIPIIVDPRLFE--YMSEN-DTSNEKNTIVFKLHVLCERGGPRLTVKTNELKWLPNGSE 194
GL P++ D E M E+ D ++++N ++ G
Sbjct: 63 GLTPLVSDLESIEGLVMREDCDCNHDENG-----------------------NYVDKGEY 99
Query: 195 LPLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPMLD-ITIARLGPGQEIELEAHA 253
P + S + P+ S L ++ I+P+ D I + +L Q++ELEA A
Sbjct: 100 CPRCSVSFSLNETGPKVVYSRD-----LKSCGDSRIKPVYDTIPLLKLKEDQDVELEAVA 154
Query: 254 VKGIGKTHAKWSPVATAWYRMLPEIVLLEDVEDEDAEKLVKTCPVNVFDI-EDIGSGKKR 312
GIGK HAKW P Y+ PEI E ++ ++ CP NV D D G
Sbjct: 155 KLGIGKEHAKWVPTTVCAYKQYPEITFNEG--EDVVYQVADACPRNVLDANRDDGV---- 208
Query: 313 ATVAQPRACTLCRECLRCGE-EWEKRVSIRRVKDHFICK 350
V C+LC+ C+R + K +++ ++ FI K
Sbjct: 209 IEVIDIENCSLCKTCVRTAKAAGSKFINVGYRENDFIFK 247
>gi|218931178|ref|NP_001135345.1| DNA-directed RNA polymerase II subunit RPB3 [Salmo salar]
gi|209734758|gb|ACI68248.1| DNA-directed RNA polymerase II subunit RPB3 [Salmo salar]
gi|223647266|gb|ACN10391.1| DNA-directed RNA polymerase II subunit RPB3 [Salmo salar]
gi|223673145|gb|ACN12754.1| DNA-directed RNA polymerase II subunit RPB3 [Salmo salar]
Length = 275
Score = 95.5 bits (236), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 65/213 (30%), Positives = 102/213 (47%), Gaps = 27/213 (12%)
Query: 72 FCNNFRVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDE 131
+ N V++ LT ++++F + D ++AN+ RR+ ++E+ T+AI+ + I N+SVI DE
Sbjct: 3 YANQPIVKITELTDENVKFVIENTDLSVANSIRRVFMSEVATIAIDWIQIDANSSVIHDE 62
Query: 132 VLAHRLGLIPI----IVDPRLFEYMSENDTSNEKNTIVFKLHVLCERGGPRLTVKTNELK 187
+AHR+GLIP+ +VD + D + ++ L V C R + L
Sbjct: 63 FIAHRVGLIPLTSDDVVDKMQYSRDCTCDDFCPECSVELTLDVRCTEDQTRHVTSRDLL- 121
Query: 188 WLPNGSELPLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPMLDITIARLGPGQEI 247
S+ PR S S+D P N DI + +L GQE+
Sbjct: 122 ------------------SNHPRVIPVTSKSRDNDP----NDYVEQDDILLVKLRKGQEL 159
Query: 248 ELEAHAVKGIGKTHAKWSPVATAWYRMLPEIVL 280
L A+A KG GK HAKW+P A + P+ L
Sbjct: 160 RLRAYAKKGFGKEHAKWNPTAGVSFEYDPDNAL 192
>gi|255714803|ref|XP_002553683.1| KLTH0E04598p [Lachancea thermotolerans]
gi|238935065|emb|CAR23246.1| KLTH0E04598p [Lachancea thermotolerans CBS 6340]
Length = 328
Score = 95.1 bits (235), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 67/203 (33%), Positives = 105/203 (51%), Gaps = 30/203 (14%)
Query: 77 RVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHR 136
+V++ TKD+++F L +D +AN+ RR++IAE+PT+AI+ V + NTSV+ DE ++HR
Sbjct: 7 QVKIREATKDNVDFILSNVDITMANSLRRVMIAEIPTLAIDSVEVETNTSVLADEFISHR 66
Query: 137 LGLIPIIVDPRLFEYMSENDTSNEKNTIVFKLHVLCERGGPRLTVKTNELKWLPNGSELP 196
LGLIP+ S++ N +++ CE R +V L G
Sbjct: 67 LGLIPL--------------QSSDINDLIYCRDCYCEDHCDRCSVV---LTLQAVG---- 105
Query: 197 LETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPMLD---ITIARLGPGQEIELEAHA 253
E++ +N +K S +L+ +PI D + I +L GQE++L+ A
Sbjct: 106 -ESESTTNVYAKDLVIVS-----NLMGRNIGHPIIQDKDGNGVLICKLRKGQELKLKCVA 159
Query: 254 VKGIGKTHAKWSPVATAWYRMLP 276
KGI K HAKWSP A + P
Sbjct: 160 KKGISKEHAKWSPAAAIEFEYDP 182
>gi|407039476|gb|EKE39676.1| DNA-directed RNA polymerase, alpha subunit, N-terminal domain
containing protein [Entamoeba nuttalli P19]
Length = 283
Score = 95.1 bits (235), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 71/277 (25%), Positives = 120/277 (43%), Gaps = 50/277 (18%)
Query: 81 IRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRLGLI 140
+ ++ + F + D ++ N RR+++AE PT+AI+ V + N+S + DE +AHRLGLI
Sbjct: 15 VECKEEKLSFHIERTDTSMVNGLRRVIMAETPTIAIQLVRVYANSSYLCDEFIAHRLGLI 74
Query: 141 PIIVDPRLFEYMSENDTSNEKNTIVFKLHVLCERGGPRLTVKT-NELKWLPNGSELPLET 199
PI N ++T L + E +L V T N+L + + P+
Sbjct: 75 PI----------DSTQIHNFEDTDDAILELKEENNSNQLVVVTSNDLVSIGDKRVAPVNY 124
Query: 200 KPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPMLDITIARLGPGQEIELEAHAVKGIGK 259
+ D +P I I +LGP Q I + + KG GK
Sbjct: 125 RNDVDP------------------------------IVITQLGPRQNIHMVCYVKKGTGK 154
Query: 260 THAKWSPVATAWYRMLPEIVLLED----VEDEDAEKLVKTCPVNVFDIEDIGSGKKRATV 315
HAKW+P ++ L +I + ++ + E + CP VFD +++G ++ +
Sbjct: 155 FHAKWNPTCQCVFQTLADIRINDEKMISLTPEQKRTFCEQCPQKVFDYQEVG---EKVFI 211
Query: 316 AQPRACTLCRECLRCGEEWEKR--VSIRRVKDHFICK 350
C C EC + +R V++ D F+ K
Sbjct: 212 RGEENCIFCNECTVYARDIGQRNLVTVTPKTDQFVFK 248
>gi|322793846|gb|EFZ17186.1| hypothetical protein SINV_07940 [Solenopsis invicta]
Length = 325
Score = 95.1 bits (235), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 66/211 (31%), Positives = 106/211 (50%), Gaps = 29/211 (13%)
Query: 72 FCNNFRVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDE 131
+ N V + LT+++++F + + ++AN+ RR+ IAE PTMAI+ + + N++V+ DE
Sbjct: 3 YANQPSVHISDLTEENVKFQVEDTELSVANSMRRVFIAETPTMAIDWIQLEANSTVLSDE 62
Query: 132 VLAHRLGLIPIIVDPRL--FEYMSENDTSN--EKNTIVFKLHVLCERGGPRLTVKTNELK 187
LAHR+G+IP+I D + +Y + + + ++ F L V C R V T + K
Sbjct: 63 FLAHRIGMIPLISDDVVDRIQYTRDCQCMDFCPECSVEFTLDVKCTEDQTR-HVTTADFK 121
Query: 188 WLPNGSELPLETKPDSNPSSKPRTYTSFS-SSQDLLPEFSNNPIRPMLDITIARLGPGQE 246
SS PR S +D E+ +I I +L GQE
Sbjct: 122 ------------------SSDPRVLPVTSRHREDEASEYGETD-----EILIVKLRKGQE 158
Query: 247 IELEAHAVKGIGKTHAKWSPVATAWYRMLPE 277
++L A+A KG GK HAKW+P A + P+
Sbjct: 159 LKLRAYAKKGFGKEHAKWNPTAGVSFEYDPD 189
>gi|443691223|gb|ELT93136.1| hypothetical protein CAPTEDRAFT_155833 [Capitella teleta]
Length = 270
Score = 95.1 bits (235), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 67/214 (31%), Positives = 105/214 (49%), Gaps = 34/214 (15%)
Query: 72 FCNNFRVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDE 131
+ N V + T ++++F L D ++ANA RR+ IAE P +AI+ V I NT+V+ DE
Sbjct: 3 YANKPTVRITESTSENLKFILEDTDLSVANALRRVFIAETPIIAIDWVQINANTTVLCDE 62
Query: 132 VLAHRLGLIPIIVDPRLFEYMSENDTSNE----KNTIVFKLHVLCERGGPRLTVKTNELK 187
LA R+GLIP+ D + + D + E + ++ F L V C R +V + +L
Sbjct: 63 FLAQRVGLIPLASDDVIDKMQYSRDCTCEEFCQECSVEFTLDVKCSDDQTR-SVTSADL- 120
Query: 188 WLPNGSE-LPLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPMLDITIARLGPGQE 246
+ N SE +P+ +K DS K I I +L GQ+
Sbjct: 121 -ISNNSEVVPVTSKQDSTQEQK--------------------------GILIVKLRKGQD 153
Query: 247 IELEAHAVKGIGKTHAKWSPVATAWYRMLPEIVL 280
++L+A+A KG K HAKW+P + P+ +L
Sbjct: 154 LKLKAYARKGFAKEHAKWNPTCGVAFEYDPDNIL 187
>gi|366993697|ref|XP_003676613.1| hypothetical protein NCAS_0E01830 [Naumovozyma castellii CBS 4309]
gi|342302480|emb|CCC70253.1| hypothetical protein NCAS_0E01830 [Naumovozyma castellii CBS 4309]
Length = 318
Score = 95.1 bits (235), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 67/206 (32%), Positives = 103/206 (50%), Gaps = 36/206 (17%)
Query: 77 RVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHR 136
+V++ TKD+++F L +D A+AN+FRR++IAE+PT+AI+ V I NT+V+ DE +AHR
Sbjct: 7 QVKIREATKDNVDFILSNVDLALANSFRRVMIAEIPTLAIDSVQIETNTTVLADEFIAHR 66
Query: 137 LGLIPI-IVDPRLFEYMSENDTSN--EKNTIVFKLHVLCERGGPRLTVKTNELKWLPNGS 193
LGLIP+ +D EY + + +K ++V L
Sbjct: 67 LGLIPLQSLDIEQLEYSRDCFCEDHCDKCSVVLTLQAFG--------------------- 105
Query: 194 ELPLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPI---RPMLDITIARLGPGQEIELE 250
E++ +N +K S +LL +PI R + I +L GQE+++
Sbjct: 106 ----ESESTTNVYAKDLVIVS-----NLLGRNIGHPIIQDREGNGVLICKLRKGQELKIT 156
Query: 251 AHAVKGIGKTHAKWSPVATAWYRMLP 276
A KGI K HAKW P A + P
Sbjct: 157 CIAKKGIAKEHAKWGPAAAIEFEYDP 182
>gi|397620460|gb|EJK65733.1| hypothetical protein THAOC_13380 [Thalassiosira oceanica]
Length = 1014
Score = 95.1 bits (235), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 58/122 (47%), Positives = 77/122 (63%), Gaps = 4/122 (3%)
Query: 230 IRPML-DITIARLGPGQEIELEAHAVKGIGKTHAKWSPVATAWYRMLPEIVLLEDVEDED 288
IRP+ DI +A+L PGQ IELEAHA KG+GK HAK+SPVATA YR++P I +++ V D+
Sbjct: 853 IRPLHEDILLAKLRPGQVIELEAHARKGVGKDHAKFSPVATASYRLMPRIEVVKPVYDDL 912
Query: 289 AEKLVKTCPVNVFDIE--DIGSGKKRATVAQPRACTLCRECLRCGEEWEKRVSIRRVKDH 346
AE+LV VF +E D G A V P ACT R +R ++ + + R+ DH
Sbjct: 913 AEELVNWFEPGVFKLEPADDGEHAFEAKVVNPYACTCSRNFMR-NPILKESIRMSRIPDH 971
Query: 347 FI 348
FI
Sbjct: 972 FI 973
Score = 84.3 bits (207), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 51/115 (44%), Positives = 69/115 (60%), Gaps = 15/115 (13%)
Query: 75 NFRVEVIRLTKDDMEF--------DLIGIDAAIANAF-RRILIAELPTMAIEKVLIANNT 125
FR I KD EF L ID N I+IAE+PTMA+E V + NNT
Sbjct: 613 QFRHAPISTPKDGAEFISRLSKGLKLNVIDRPAKNELVFEIMIAEVPTMALEYVYMWNNT 672
Query: 126 SVIQDEVLAHRLGLIPIIVDPRLFEYM---SEND---TSNEKNTIVFKLHVLCER 174
+I DEVL+HR+GLIP+ VDPRLF++ +++D + ++NTIVF+L+V C R
Sbjct: 673 GLIHDEVLSHRMGLIPLNVDPRLFDHYGLDTDDDGEPAATDRNTIVFRLNVSCGR 727
>gi|67471071|ref|XP_651491.1| DNA-directed RNA polymerase II subunit [Entamoeba histolytica
HM-1:IMSS]
gi|56468232|gb|EAL46103.1| DNA-directed RNA polymerase II subunit, putative [Entamoeba
histolytica HM-1:IMSS]
Length = 283
Score = 95.1 bits (235), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 71/277 (25%), Positives = 120/277 (43%), Gaps = 50/277 (18%)
Query: 81 IRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRLGLI 140
+ ++ + F + D ++ N RR+++AE PT+AI+ V + N+S + DE +AHRLGLI
Sbjct: 15 VECKEEKLSFHIERTDTSMVNGLRRVIMAETPTIAIQLVRVYANSSYLCDEFIAHRLGLI 74
Query: 141 PIIVDPRLFEYMSENDTSNEKNTIVFKLHVLCERGGPRLTVKT-NELKWLPNGSELPLET 199
PI N ++T L + E +L V T N+L + + P+
Sbjct: 75 PI----------DSTQIHNFEDTDDAILELKEENNSNQLVVVTSNDLVSIGDKRVAPVNY 124
Query: 200 KPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPMLDITIARLGPGQEIELEAHAVKGIGK 259
K D +P I I +LGP Q I + + KG GK
Sbjct: 125 KNDVDP------------------------------IVITQLGPRQNIHMVCYVKKGTGK 154
Query: 260 THAKWSPVATAWYRMLPEIVLLED----VEDEDAEKLVKTCPVNVFDIEDIGSGKKRATV 315
HAKW+P ++ L +I + ++ + E + CP +FD +++G ++ +
Sbjct: 155 FHAKWNPTCQCVFQTLADIRINDEKMISLTPEQKRTFCEQCPQKLFDYQEVG---EKVFI 211
Query: 316 AQPRACTLCRECLRCGEEWEKR--VSIRRVKDHFICK 350
C C EC + +R V++ D F+ K
Sbjct: 212 RGEENCIFCNECTVYARDIGQRNLVTVTPKTDQFVFK 248
>gi|154340820|ref|XP_001566363.1| DNA-directed RNA polymerase I-like protein [Leishmania braziliensis
MHOM/BR/75/M2904]
gi|134063686|emb|CAM39871.1| DNA-directed RNA polymerase I-like protein [Leishmania braziliensis
MHOM/BR/75/M2904]
Length = 337
Score = 95.1 bits (235), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 76/247 (30%), Positives = 112/247 (45%), Gaps = 37/247 (14%)
Query: 86 DDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRLGLIPIIVD 145
+ + F L +D++ ANA RR+++AE+PT+AIE V I NTSV+ DE++AHRLGL+P+
Sbjct: 17 ETLTFQLNEVDSSFANALRRVMLAEIPTLAIEYVTIRQNTSVLPDEMIAHRLGLVPLF-- 74
Query: 146 PRLFEYMSENDTSNEKNTIVFKLHVLCERGGPRLTVKTNELKWLPNGSELPLETKPDSNP 205
S + + F C G T LK ++ P+ +
Sbjct: 75 ------------SEKAKRLNFPQDCGCGGSGCPDCQITGSLK---------VQCPPNQHS 113
Query: 206 SSKPRTYTSFSSSQDLLPEFSNNPIRPMLDITIARLGPGQEIELEAHAVKGIGKTHAKWS 265
+ S ++ P + I + LG Q ++L K I KTHAK+
Sbjct: 114 KQVFIGDSLQIDSAEVYPVSAEEH-----GIWLVTLGRSQVLDLNVLIRKNIAKTHAKFM 168
Query: 266 PVATAWYRMLPEIVL----LEDVEDEDAEKLVKTCPVNVFD-IEDIGSGKKRATVAQPRA 320
PVAT R EI+L + + +A + V CP NVF +E G + V A
Sbjct: 169 PVATVAMRYAAEILLNPNGFQALGKTNAREWVARCPRNVFRFVERTG----QVEVQDEGA 224
Query: 321 CTLCREC 327
C CREC
Sbjct: 225 CIFCREC 231
>gi|324521335|gb|ADY47834.1| DNA-directed RNA polymerase II subunit RPB3 [Ascaris suum]
Length = 275
Score = 94.7 bits (234), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 68/219 (31%), Positives = 100/219 (45%), Gaps = 31/219 (14%)
Query: 72 FCNNFRVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDE 131
+ N RV + L + ++F L D ++AN+ RRI IAE+PTMAI+ V I NTSV+ DE
Sbjct: 3 YANQPRVTISMLNDEMVKFVLEDTDLSVANSLRRIFIAEVPTMAIDWVQIEANTSVLHDE 62
Query: 132 VLAHRLGLIPIIVDPRLFEYMSENDTSNEKNTIVFKLHVLCERGGPRLTVKTNELKWLPN 191
+AHR+GLIP+ ++N + + C P V
Sbjct: 63 FIAHRMGLIPLT-------------SNNVVDKFQYSRDCQCNDFCPECAV---------- 99
Query: 192 GSELPLETKPDSNPSSKPRTYTSFSSSQDLLP------EFSNNPIRPMLDITIARLGPGQ 245
E+ L + D + T SS+ ++P + N DI I +L GQ
Sbjct: 100 --EMRLSVRWDDEGTRSVTTADLESSNAAVVPACGRHLQGRNAEDGTSEDILIVKLRRGQ 157
Query: 246 EIELEAHAVKGIGKTHAKWSPVATAWYRMLPEIVLLEDV 284
EI ++ +A KG GK HAKW+P + P+ L V
Sbjct: 158 EIRMKCYAKKGFGKEHAKWNPTCGVAFEYDPDNALRHTV 196
>gi|393246178|gb|EJD53687.1| insert subdomain of RNA polymerase alpha subunit [Auricularia
delicata TFB-10046 SS5]
Length = 380
Score = 94.7 bits (234), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 68/207 (32%), Positives = 108/207 (52%), Gaps = 15/207 (7%)
Query: 75 NFRVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLA 134
N ++E +R +D ++F L +D A AN+ RR+++A+LPT+AI+ V I +NT V+ DE+LA
Sbjct: 6 NVKIEDLR--RDRVKFTLENVDLAFANSLRRVMMADLPTVAIDMVEIESNTGVLVDELLA 63
Query: 135 HRLGLIPIIV----DPRLFEYMSENDTSNEKNTIVFKLHVLCERGGPRLTVKTNELKWLP 190
HRLG+IP++ + + +S + +L V C L V +N L+ +P
Sbjct: 64 HRLGMIPLVSTNCDEAMRYTRDCNCLSSCSSCAVQLELKVSCNTDNRTLDVTSNHLEVVP 123
Query: 191 NGSELPLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNP-IRPMLDITIARLGPGQEIEL 249
S + + R +F P ++P + P+L IA+L GQE++L
Sbjct: 124 MDSYDNFDMGGPATGEELSRRVENFGH-----PVGKHDPSVAPVL---IAKLRKGQELKL 175
Query: 250 EAHAVKGIGKTHAKWSPVATAWYRMLP 276
A KG+ K HAKWSP A + P
Sbjct: 176 RCIAKKGVAKEHAKWSPCAAVSFEYDP 202
>gi|242247264|ref|NP_001156090.1| DNA-directed RNA polymerase II polypeptide-like [Acyrthosiphon
pisum]
gi|239789163|dbj|BAH71223.1| ACYPI001769 [Acyrthosiphon pisum]
Length = 273
Score = 94.7 bits (234), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 67/211 (31%), Positives = 103/211 (48%), Gaps = 29/211 (13%)
Query: 72 FCNNFRVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDE 131
+ N V + LT D ++F + D ++AN+ RR+ IAE PT+AI+ V + N++V+ DE
Sbjct: 3 YANQPSVHISELTTDSIKFQIEDTDLSVANSLRRVFIAETPTLAIDWVQLDCNSTVLSDE 62
Query: 132 VLAHRLGLIPIIVDPRL--FEYMSENDTSN--EKNTIVFKLHVLCERGGPRLTVKTNELK 187
+A R+GLIP+ D + +Y + S+ ++ F LHV C R V T +L
Sbjct: 63 FIASRIGLIPLTSDEIVDRLQYSRDCTCSDFCHDCSVEFNLHVKCSEEMTR-HVTTADL- 120
Query: 188 WLPNGSELPLETKPDSNPSSKPRTYTSFSSSQDL-LPEFSNNPIRPMLDITIARLGPGQE 246
S+ PR S +QD + E+ DI I +L GQE
Sbjct: 121 -----------------VSNNPRVVPVTSRNQDSDINEYGEKD-----DILIIKLRKGQE 158
Query: 247 IELEAHAVKGIGKTHAKWSPVATAWYRMLPE 277
+++ A A KG GK HAKW+P + P+
Sbjct: 159 LKIRAFAKKGFGKEHAKWNPTTGVSFEYDPD 189
>gi|114051193|ref|NP_001040388.1| DNA-directed RNA polymerase II polypeptide [Bombyx mori]
gi|95102714|gb|ABF51298.1| DNA-directed RNA polymerase II polypeptide [Bombyx mori]
Length = 275
Score = 94.7 bits (234), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 67/213 (31%), Positives = 104/213 (48%), Gaps = 27/213 (12%)
Query: 72 FCNNFRVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDE 131
+ N V + L+ ++++F + + ++AN+ RR+ IAE PTMAI+ V + N++V+ DE
Sbjct: 3 YANQPSVHITELSDENVKFVVEDTELSVANSMRRVFIAETPTMAIDWVQLEANSTVLSDE 62
Query: 132 VLAHRLGLIPIIVDPRLFEYMSENDTS----NEKNTIVFKLHVLCERGGPRLTVKTNELK 187
LAHR+GLIP+I D + + D + ++ F L V C R V T +LK
Sbjct: 63 FLAHRIGLIPLISDDVVDKIRYSRDCMCVDFCSECSVEFTLDVKCTDEQTR-HVTTADLK 121
Query: 188 WLPNGSELPLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPMLDITIARLGPGQEI 247
S+P P T Q E +I I +L GQE+
Sbjct: 122 --------------SSDPRVVPVTSRHRDEDQADYGEAD--------EILIIKLRKGQEL 159
Query: 248 ELEAHAVKGIGKTHAKWSPVATAWYRMLPEIVL 280
+L A+A KG GK HAKW+P A + P+ ++
Sbjct: 160 KLRAYAKKGFGKEHAKWNPTAGVSFEYDPDNIM 192
>gi|330506856|ref|YP_004383284.1| DNA-directed RNA polymerase subunit D [Methanosaeta concilii GP6]
gi|328927664|gb|AEB67466.1| DNA-directed RNA polymerase subunit D [Methanosaeta concilii GP6]
Length = 264
Score = 94.7 bits (234), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 69/275 (25%), Positives = 127/275 (46%), Gaps = 50/275 (18%)
Query: 75 NFRVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLA 134
NF E++ L +D + + L G+ AA AN RR ++E+P +AI+++ + +NTSV+ DE +
Sbjct: 2 NF--ELLELREDRIRYLLSGVSAAFANGIRRACMSEVPILAIDEINLYDNTSVLFDEQIG 59
Query: 135 HRLGLIPIIVDPRLFEYMSENDTSNEKNTIVFKLHVLCERGGPRLTVKTNELKWLPNGSE 194
R+G +P++ D E+ ++ + + GP +
Sbjct: 60 LRIGEVPLVADELDLFSQPEDCQCGGTGCPGCRVDFMLSKEGPGMVY------------- 106
Query: 195 LPLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPMLD-ITIARLGPGQEIELEAHA 253
S+D+ +F++ +RP D I + LG G+++ +E +A
Sbjct: 107 -----------------------SEDI--QFTDPGVRPAFDKIPLVILGEGEKLVMEGYA 141
Query: 254 VKGIGKTHAKWSPVATAWYRMLPEIVLLEDVEDEDAEKLVKTCPVNVFDIEDIGSGKKRA 313
K +GK H+KW Y+ LP I + E + K V+ CP ++ IE+ G+ +A
Sbjct: 142 TKRVGKEHSKWQAGTLCGYKNLPSITVSEAC--DGCGKCVEACPRDILVIEE---GRAKA 196
Query: 314 TVAQPRACTLCRECLRCGEEWEKRVSIRRVKDHFI 348
T C+LC+ C+ G + ++ + D F+
Sbjct: 197 T--NILECSLCKLCV--GACEAAAIDLKPIHDSFV 227
>gi|321259555|ref|XP_003194498.1| RNA polymerase II subunit 3 [Cryptococcus gattii WM276]
gi|317460969|gb|ADV22711.1| RNA polymerase II subunit 3, putative [Cryptococcus gattii WM276]
Length = 377
Score = 94.7 bits (234), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 72/211 (34%), Positives = 106/211 (50%), Gaps = 10/211 (4%)
Query: 74 NNFRVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVL 133
N R+ + L + D F L G++ A AN+ RR+++A++PT+AI++VL NTS + DE++
Sbjct: 23 NQPRLLLRNLNETDATFHLSGVELAYANSLRRVMMADVPTIAIDQVLFTQNTSPLADEMI 82
Query: 134 AHRLGLIPIIVD--PRLFEYMSENDTSNEKNTIVFKLHVLCERGGP------RLTVKTNE 185
AHRLGLIP+I + Y + D + L + G R+T E
Sbjct: 83 AHRLGLIPLISRNVSKGLRYTRDCDCDEGCYYCMVTLRLKVTFSGNDGEQFMRVTSDMLE 142
Query: 186 LKWLPNGSELPLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPMLDITIARLGPGQ 245
+ P G P P S + R + + LP NP P I IA++G GQ
Sbjct: 143 VVPSPGGPPPPNPYGPPPELSEEDRIIINNRDPEMGLPCGKGNPSIP--PILIAKMGKGQ 200
Query: 246 EIELEAHAVKGIGKTHAKWSPVATAWYRMLP 276
EI++ A KGI K HAKWSP++T + P
Sbjct: 201 EIDVLCKAYKGIAKHHAKWSPLSTVAFEYDP 231
>gi|242011218|ref|XP_002426352.1| DNA-directed RNA polymerase II 33 kDa polypeptide, putative
[Pediculus humanus corporis]
gi|212510429|gb|EEB13614.1| DNA-directed RNA polymerase II 33 kDa polypeptide, putative
[Pediculus humanus corporis]
Length = 275
Score = 94.4 bits (233), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 66/211 (31%), Positives = 103/211 (48%), Gaps = 29/211 (13%)
Query: 72 FCNNFRVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDE 131
+ N V + LT ++++F + + ++AN+ RR+ IAE PTMAI+ V + N++V+ DE
Sbjct: 3 YANQPSVHITDLTDENVKFQIEDTELSVANSMRRVFIAETPTMAIDWVQLEANSTVLADE 62
Query: 132 VLAHRLGLIPIIVDPRLFEYMSENDTS----NEKNTIVFKLHVLCERGGPRLTVKTNELK 187
++HR+GLIP+ D + D + + ++ F L V C R V T +LK
Sbjct: 63 FISHRVGLIPLTSDEVVDRIQYTRDCTCLDFCPECSVEFTLDVKCTDDHTR-HVTTADLK 121
Query: 188 WLPNGSELPLETKPDSNPSSKPRTYTSFS-SSQDLLPEFSNNPIRPMLDITIARLGPGQE 246
SS PR S +D E+ +I I +L GQE
Sbjct: 122 ------------------SSDPRVLPVTSRHREDDTSEYGEAD-----EILIVKLRKGQE 158
Query: 247 IELEAHAVKGIGKTHAKWSPVATAWYRMLPE 277
++L A+A KG GK HAKW+P A + P+
Sbjct: 159 LKLRAYAKKGFGKEHAKWNPTAGVCFEYDPD 189
>gi|385805508|ref|YP_005841906.1| RNA polymerase, insert [Fervidicoccus fontis Kam940]
gi|383795371|gb|AFH42454.1| RNA polymerase, insert [Fervidicoccus fontis Kam940]
Length = 281
Score = 94.4 bits (233), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 72/222 (32%), Positives = 108/222 (48%), Gaps = 38/222 (17%)
Query: 76 FRVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAH 135
+++ I + ++ +E + + + RRI+I E+PTMA++ VLI N SV+ DEVLAH
Sbjct: 1 MKIKPINIKENFLELYIEDAPQEVLTSLRRIIIEEVPTMAVDNVLILENNSVLHDEVLAH 60
Query: 136 RLGLIPIIVDPRLFEYMSENDTSNEKNTIVFKLHVLCERGGPRLTVKTNELKWLPNGSEL 195
RLG+IP+ D L +Y + + + N CE L L
Sbjct: 61 RLGMIPLYSDRALEKYRAPEECAECTN---------CENCFDIL--------------HL 97
Query: 196 PLETKPDSNPSSKPRTYTSFSSSQ--DLLPEFSNNPIRPMLDITIARLGPGQEIELEAHA 253
+E K + K YT S+ D+ P F DI I LG GQ+I LEA A
Sbjct: 98 EVENKDE----DKKVVYTGELKSEDPDIYPVFK--------DIPIVVLGKGQKIVLEAEA 145
Query: 254 VKGIGKTHAKWSPVATAWYRMLPEIVL-LEDVEDEDAEKLVK 294
G GK H KWSPV+ + +PEI+ E E++++ + +K
Sbjct: 146 RLGRGKEHIKWSPVSISALISVPEIIFSFEQCEEQESNECLK 187
>gi|307175611|gb|EFN65520.1| DNA-directed RNA polymerase II subunit RPB3 [Camponotus floridanus]
Length = 276
Score = 94.4 bits (233), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 66/211 (31%), Positives = 103/211 (48%), Gaps = 29/211 (13%)
Query: 72 FCNNFRVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDE 131
+ N V + LT+++++F + + ++AN+ RR+ IAE PTMAI+ + + N++V+ DE
Sbjct: 3 YANQPSVHISDLTEENVKFQVEDTELSVANSMRRVFIAETPTMAIDWIQLEANSTVLSDE 62
Query: 132 VLAHRLGLIPIIVDPRLFEYMSENDTSN----EKNTIVFKLHVLCERGGPRLTVKTNELK 187
LAHR+G+IP+I D + D + ++ F L V C R V T + K
Sbjct: 63 FLAHRIGMIPLISDDVVDRIQFTRDCQCMDFCPECSVEFTLDVKCIEDQTR-HVTTADFK 121
Query: 188 WLPNGSELPLETKPDSNPSSKPRTYTSFSSS-QDLLPEFSNNPIRPMLDITIARLGPGQE 246
SS PR S +D E+ +I I +L GQE
Sbjct: 122 ------------------SSDPRVLPVTSRHREDDASEYGETD-----EILIVKLRKGQE 158
Query: 247 IELEAHAVKGIGKTHAKWSPVATAWYRMLPE 277
++L A+A KG GK HAKW+P A + P+
Sbjct: 159 LKLRAYAKKGFGKEHAKWNPTAGVSFEYDPD 189
>gi|11499863|ref|NP_071107.1| DNA-directed RNA polymerase subunit D [Archaeoglobus fulgidus DSM
4304]
gi|3122769|sp|O28002.1|RPOD_ARCFU RecName: Full=DNA-directed RNA polymerase subunit D
gi|2648239|gb|AAB88973.1| DNA-directed RNA polymerase, subunit D (rpoD) [Archaeoglobus
fulgidus DSM 4304]
Length = 264
Score = 94.4 bits (233), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 72/258 (27%), Positives = 115/258 (44%), Gaps = 51/258 (19%)
Query: 78 VEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRL 137
+E++ ++F L A+AN+FRR + AE+P MA++ V I N+S DEV+AHRL
Sbjct: 5 IEILEEKDFKIKFILKNASPALANSFRRAMKAEVPAMAVDYVDIYLNSSYFYDEVIAHRL 64
Query: 138 GLIPIIVDPRLFEYMSENDTSNE---KNTIVFKLHVLCERGGPRLTVKTNELKWLPNGSE 194
++PI F SE E I F+L+V GP++ + +
Sbjct: 65 AMLPIKTYLDRFNMQSECSCGGEGCPNCQISFRLNV----EGPKVVYSGDFI-------- 112
Query: 195 LPLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPMLDITIARLGPGQEIELEAHAV 254
S D++ N P+ + + GQ++ LEA A
Sbjct: 113 ---------------------SDDPDVVFAIDNIPVLELFE--------GQQLMLEAVAR 143
Query: 255 KGIGKTHAKWSPVATAWYRMLPEIVLLEDVEDEDAEKLVKTCPVNVFDIEDIGSGKKRAT 314
G G+ HAK+ PV+ Y+++PEIV+ E+ ++ CP NVF+ +
Sbjct: 144 LGTGREHAKFQPVSVCVYKIIPEIVVNENC--NGCGDCIEACPRNVFE-----KDGDKVR 196
Query: 315 VAQPRACTLCRECLRCGE 332
V AC++C EC+ E
Sbjct: 197 VKNVMACSMCGECVEVCE 214
>gi|308159629|gb|EFO62154.1| DNA-directed RNA polymerase RPB3 [Giardia lamblia P15]
Length = 326
Score = 94.4 bits (233), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 75/267 (28%), Positives = 118/267 (44%), Gaps = 41/267 (15%)
Query: 75 NFRVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLA 134
N ++V+ T +E ++ G+D + N RR + A++PT++I+ V +N + + +E +A
Sbjct: 2 NPSIKVLSKTDLKLELEISGVDISYVNGLRRAIYADVPTLSIDIVKFLDNNTTLTEEFIA 61
Query: 135 HRLGLIPIIVDPRL------FEYMSENDTSNEKNTIVFKLHVLCERGGPRLTVKTNELKW 188
HRLGLIP+ L + E+ T E FK + ++ V T++
Sbjct: 62 HRLGLIPLKTAGPLSAISYWYTCDEEHSTEIECRECTFKGTLNISNDSTKIRVVTDKDIH 121
Query: 189 LPNGSELPLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPMLDITIARLGPGQEIE 248
+G + T + SS T T P P+L +L PG+ I
Sbjct: 122 FDHGG---ISTLSNYLESSLGVTET---------------PSIPIL-----KLAPGESIN 158
Query: 249 LEAHAVKGIGKTHAKWSPVATAWYRMLPEIVLLEDVE-------DEDAEKLVKTCPVNVF 301
+A K GK HAKW P A R L I+L ++ E D + +TCP NVF
Sbjct: 159 ALLYARKDRGKIHAKWCPAACVVLRPLARIILCDEFERLPQQHNDIARTYISETCPRNVF 218
Query: 302 DIEDIGSGKKRATVAQPRACTLCRECL 328
IE+ +R V P +C C +C
Sbjct: 219 TIEN-----RRVVVKDPNSCIFCNDCF 240
>gi|387592898|gb|EIJ87922.1| RNA polymerase Rpb3/Rpb11 dimerization domain-containing protein
[Nematocida parisii ERTm3]
Length = 297
Score = 94.0 bits (232), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 60/190 (31%), Positives = 96/190 (50%), Gaps = 43/190 (22%)
Query: 95 IDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRLGLIPIIVDPRLFEYMSE 154
ID ++ NA RR +I+++PT+AI V I N +V+ DE+L+HRLGLIPIIVD + FE + +
Sbjct: 53 IDPSVLNAMRRTIISDVPTVAIHWVYIRENETVMADEILSHRLGLIPIIVDAKDFERVVK 112
Query: 155 N------DTSNEKNTIVFKLHVLCERGGPRLTVKTNELKWLPNGSELPLETKPDSNPSSK 208
+KN+I +L V+ LTV++N++K L
Sbjct: 113 TPELDPFTELTDKNSIQMEL-VITNNTDKILTVRSNDIKILSK----------------- 154
Query: 209 PRTYTSFSSSQDLLPEFSNNPIRPMLDITIARLGPGQEIELEAHAVKGIGKTHAKWSPVA 268
+N I+ ++ I RL PG++IE A+ G G+ H+KW P +
Sbjct: 155 -----------------TNAAIKQ--NVIITRLVPGKKIECRLFAIIGTGREHSKWMPTS 195
Query: 269 TAWYRMLPEI 278
+YR + ++
Sbjct: 196 VCYYRTIKKL 205
>gi|68070451|ref|XP_677137.1| DNA-directed RNA polymerase II [Plasmodium berghei strain ANKA]
gi|56497133|emb|CAH93597.1| DNA-directed RNA polymerase II, putative [Plasmodium berghei]
Length = 331
Score = 94.0 bits (232), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 62/199 (31%), Positives = 101/199 (50%), Gaps = 27/199 (13%)
Query: 77 RVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHR 136
++E+ ++K++MEF L +AA+ANA RRI+++E+PT+AI+ V + NTS DE +AHR
Sbjct: 10 KIEIKSISKNEMEFTLYNSNAALANALRRIMLSEVPTLAIDIVNVYENTSPFHDEFIAHR 69
Query: 137 LGLIPI---IVDPRLFEYMSENDTSNEKNTIVFKLHVLCERGGPRLTVKTNELKWLPNGS 193
+GLIPI + F + + + T+ + + V C ++ V +++ L +
Sbjct: 70 IGLIPIDSRNIKSYEFRERCKCKETCSRCTVQYIIEVKCNNAN-KINVSHYDIEALDHEP 128
Query: 194 ELPLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPMLD-ITIARLGPGQEIELEAH 252
+P+ P+ N NN I M + I I L Q I ++
Sbjct: 129 NIPMPI-PNDN---------------------KNNNIEKMENAIPIVTLSKNQTIHMKLT 166
Query: 253 AVKGIGKTHAKWSPVATAW 271
A KGIGK HAKW P ++
Sbjct: 167 ATKGIGKMHAKWIPANVSY 185
>gi|15897038|ref|NP_341643.1| DNA-directed RNA polymerase subunit D (rpoD) [Sulfolobus
solfataricus P2]
gi|284173382|ref|ZP_06387351.1| DNA-directed RNA polymerase, subunit D (rpoD) [Sulfolobus
solfataricus 98/2]
gi|384433538|ref|YP_005642896.1| RNA polymerase insert [Sulfolobus solfataricus 98/2]
gi|2500627|sp|P95989.1|RPOD_SULSO RecName: Full=DNA-directed RNA polymerase subunit D
gi|167013264|pdb|2PA8|D Chain D, X-Ray Crystal Structure Of The DL SUBCOMPLEX OF THE
SULFOLOBUS Solfataricus Rna Polymerase
gi|167744884|pdb|2PMZ|D Chain D, Archaeal Rna Polymerase From Sulfolobus Solfataricus
gi|167744895|pdb|2PMZ|S Chain S, Archaeal Rna Polymerase From Sulfolobus Solfataricus
gi|239782146|pdb|3HKZ|D Chain D, The X-Ray Crystal Structure Of Rna Polymerase From Archaea
gi|239782159|pdb|3HKZ|O Chain O, The X-Ray Crystal Structure Of Rna Polymerase From Archaea
gi|1707823|emb|CAA69531.1| DNA-directed RNA polymerase subunit D [Sulfolobus solfataricus P2]
gi|13813203|gb|AAK40433.1| DNA-directed RNA polymerase, subunit D (rpoD) [Sulfolobus
solfataricus P2]
gi|261601692|gb|ACX91295.1| RNA polymerase insert [Sulfolobus solfataricus 98/2]
Length = 265
Score = 94.0 bits (232), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 86/270 (31%), Positives = 121/270 (44%), Gaps = 52/270 (19%)
Query: 83 LTKDDMEFDLI--GIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRLGLI 140
L KDD DL+ G NA RR + +P MA++ V N S + DE+LAHRL LI
Sbjct: 6 LHKDDTRIDLVFEGYPLEFVNAIRRASMLYVPIMAVDDVYFIENNSPLYDEILAHRLALI 65
Query: 141 PIIVDPRLFEYM-SENDTSNEKNTIVFKLHVLCERGGPRLTVKTNELKWLPNGSELPLET 199
P + + L Y E +N CE+ ++ ++ PN
Sbjct: 66 PFMSEEALDTYRWPEECIECTEN---------CEKCYTKIYIEAEA----PN-------- 104
Query: 200 KPDSNPSSKPRT-YTSFSSSQDLLPEFSNNPIRPMLDITIARLGPGQEIELEAHAVKGIG 258
+PR Y+ S+D P S PI DI I LG Q+I LEA G G
Sbjct: 105 --------EPRMIYSKDIKSED--P--SVVPISG--DIPIVLLGTNQKISLEARLRLGYG 150
Query: 259 KTHAKWSPVATAWYRMLPEIVLLEDVEDEDAEKLVKTCPVNVFDIEDIGSGKKRATVAQP 318
K HAK+ PV+ + R P++ +L + EK V CP VF+++D + +V
Sbjct: 151 KEHAKFIPVSLSVVRYYPKVEIL-----ANCEKAVNVCPEGVFELKD-----GKLSVKNE 200
Query: 319 RACTLCRECLRCGEEWEKRVSIRRVKDHFI 348
+CTLC ECLR + I V+D +I
Sbjct: 201 LSCTLCEECLR---YCNGSIRISFVEDKYI 227
>gi|88604132|ref|YP_504310.1| DNA-directed RNA polymerase subunit D [Methanospirillum hungatei
JF-1]
gi|88189594|gb|ABD42591.1| DNA-directed RNA polymerase, subunit D [Methanospirillum hungatei
JF-1]
Length = 272
Score = 94.0 bits (232), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 75/253 (29%), Positives = 110/253 (43%), Gaps = 45/253 (17%)
Query: 76 FRVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAH 135
++E L ++ F L A ANA RR +++E+ T AIE V I +NTS + DE+L H
Sbjct: 1 MKIEFSSLEENAASFVLSDAPIAFANALRRAMVSEVMTFAIEDVKIYDNTSALFDEILTH 60
Query: 136 RLGLIPIIVDPRLFEYMSENDTSNEKNTIVFKLHVLCERGGPRLTVKTNELKWLPNGSEL 195
RLGLIP++ DP F S+ + G PR TV L E
Sbjct: 61 RLGLIPLVTDPDSFVPRSQCSCNGA--------------GCPRCTVT------LTMSVEG 100
Query: 196 PLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPMLD-ITIARLGPGQEIELEAHAV 254
P S DL+ + + +RP D I I +L Q++ +EA A
Sbjct: 101 P-----------------GVVMSGDLISQ--DAVVRPAEDNIPIVKLEKNQKVVIEAQAY 141
Query: 255 KGIGKTHAKWSPVATAWYRMLPEIVLLEDVEDEDAEKLVKTCPVNVFDIEDIGSGKKRAT 314
G HAKWSP Y+ P ++ D + V+ CP + +++ G K
Sbjct: 142 MERGMEHAKWSPTTVCGYKNYP--IITHDERCDGCGLCVEVCPKEILEVKGSAVGVKDGG 199
Query: 315 VAQPRACTLCREC 327
+ +C+LCR C
Sbjct: 200 L---ESCSLCRLC 209
>gi|399216931|emb|CCF73618.1| unnamed protein product [Babesia microti strain RI]
Length = 324
Score = 94.0 bits (232), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 84/282 (29%), Positives = 126/282 (44%), Gaps = 49/282 (17%)
Query: 78 VEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRL 137
+++ +LT D ++F L D +ANA RRI+++E+P +AIE V + N + + DE +AHRL
Sbjct: 12 IDITQLTVDTIKFTLHNSDVTLANALRRIMLSEIPCLAIEIVTVLENDTPLHDEYIAHRL 71
Query: 138 GLIPIIVDPRL--FEYMSENDTSNE--KNTIVFKLHVLCERGGPRLTVKTNELKWLPNGS 193
GL+P I R+ FEY + S++ K T+ + L V C P TV L +P+
Sbjct: 72 GLLP-IDSTRISEFEYRDKCSCSDKCSKCTVDYNLQVTCTE--PFRTV--THLDIIPDEY 126
Query: 194 ELPLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPMLDITIARLGPGQEIELEAHA 253
+ PL PR S D +P I ++ Q I L+ A
Sbjct: 127 DTPLPL---------PR-------SGDGIP--------------IVKIRRDQSIHLKLTA 156
Query: 254 VKGIGKTHAKWSPVATAWYRMLPEIV----LLEDVEDEDAEKLVKTCPVNVFDIEDIGSG 309
KGIGK HAKW VA Y++ P ++ +D + +CP + ED G
Sbjct: 157 TKGIGKLHAKWV-VANVAYQIEPLFKINSEMMGRTTQQDRATIASSCPRGILVSEDDNYG 215
Query: 310 KKRATVAQPRACTLCRECLRCGEEWEKRVSIR----RVKDHF 347
V C C C+ ++ + IR K HF
Sbjct: 216 GT-IRVTNSLECIYCDSCINTCKDLGFKGLIRIEPDETKFHF 256
>gi|291242309|ref|XP_002741050.1| PREDICTED: DNA directed RNA polymerase II polypeptide C-like
[Saccoglossus kowalevskii]
Length = 275
Score = 94.0 bits (232), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 62/210 (29%), Positives = 101/210 (48%), Gaps = 27/210 (12%)
Query: 72 FCNNFRVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDE 131
+ N V + L+ D+++F + D ++ANA RR+ IAE+ T+AI+ + I N+SV+ DE
Sbjct: 3 YANQPSVRLSELSDDNVKFSVEDTDLSVANALRRVFIAEVATIAIDWIQIEANSSVLHDE 62
Query: 132 VLAHRLGLIPIIVDPRLFEYMSENDTSNEKN----TIVFKLHVLCERGGPRLTVKTNELK 187
++HR+GLIP+ D + D + ++ ++ F L V C R + +
Sbjct: 63 FISHRVGLIPLTSDEVVDRMQYSRDCTCDEFCPECSVDFMLDVKCTDDQTRHVTSRDLMT 122
Query: 188 WLPNGSELPLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPMLDITIARLGPGQEI 247
SNP P T D ++ +N DI I +L GQE+
Sbjct: 123 ---------------SNPRVVPVTS---RHRDDEAGDYGDND-----DILIVKLRKGQEL 159
Query: 248 ELEAHAVKGIGKTHAKWSPVATAWYRMLPE 277
+L+A+ KG K HAKW+P A + P+
Sbjct: 160 KLKAYGRKGFAKEHAKWNPTAGVSFEYDPD 189
>gi|209730678|gb|ACI66208.1| DNA-directed RNA polymerase II subunit RPB3 [Salmo salar]
Length = 275
Score = 94.0 bits (232), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 64/213 (30%), Positives = 101/213 (47%), Gaps = 27/213 (12%)
Query: 72 FCNNFRVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDE 131
+ N V++ LT ++++F + D ++AN+ RR+ ++E+ T+AI+ + I N+SVI DE
Sbjct: 3 YANQPIVKITELTDENVKFVIENTDLSVANSIRRVFMSEVATIAIDWIQIDANSSVIHDE 62
Query: 132 VLAHRLGLIPI----IVDPRLFEYMSENDTSNEKNTIVFKLHVLCERGGPRLTVKTNELK 187
+AHR+GLIP+ +VD + D + ++ L C R + L
Sbjct: 63 FIAHRVGLIPLTSDDVVDKMQYSRDCTCDDFCPECSVELTLDARCTEDQTRHVTSRDLL- 121
Query: 188 WLPNGSELPLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPMLDITIARLGPGQEI 247
S+ PR S S+D P N DI + +L GQE+
Sbjct: 122 ------------------SNHPRVIPVTSKSRDNDP----NDYVEQDDILLVKLRKGQEL 159
Query: 248 ELEAHAVKGIGKTHAKWSPVATAWYRMLPEIVL 280
L A+A KG GK HAKW+P A + P+ L
Sbjct: 160 RLRAYAKKGFGKEHAKWNPTAGVSFEYDPDNAL 192
>gi|340976001|gb|EGS23116.1| RNA polymerase II subunit 3-like protein [Chaetomium thermophilum
var. thermophilum DSM 1495]
Length = 344
Score = 93.6 bits (231), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 69/202 (34%), Positives = 103/202 (50%), Gaps = 30/202 (14%)
Query: 78 VEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRL 137
V++ + ++F+L D + AN+ RR+++AE+PT+AI+ V I NTSV+ DE +AHRL
Sbjct: 19 VKISQADSTRVKFELSNADLSFANSLRRVMLAEIPTIAIDLVEIEVNTSVLADEFIAHRL 78
Query: 138 GLIPI---IVDPRLFEYMSENDTSNEKNTIVFKLHVLCERGGPRLTVKTNELKWLPNGSE 194
GLIP+ VD L+ + D E+ ++ LH C G + V + +L +P G
Sbjct: 79 GLIPLNAEGVDQLLYSRDCDCDGYCEQCSVRLSLHAKC-TGDENMHVFSRDL--VPVGER 135
Query: 195 LPLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPMLDITIARLGPGQEIELEAHAV 254
+ +Q+L N+P L I +L PGQEI+LE A
Sbjct: 136 V----------------------NQNLGTPIINDPDG--LGPLILKLRPGQEIKLECIAK 171
Query: 255 KGIGKTHAKWSPVATAWYRMLP 276
KGI K HAKW+P A + P
Sbjct: 172 KGIAKEHAKWAPSAAIGFEYDP 193
>gi|340719719|ref|XP_003398295.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB3-like [Bombus
terrestris]
Length = 273
Score = 93.2 bits (230), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 65/200 (32%), Positives = 102/200 (51%), Gaps = 29/200 (14%)
Query: 83 LTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRLGLIPI 142
LT+++++F + + ++AN+ RR+ IAE PTMAI+ V + N++V+ DE LAHR+G+IP+
Sbjct: 11 LTEENVKFQVEDTELSVANSMRRVFIAETPTMAIDWVQLEANSTVLSDEFLAHRIGMIPL 70
Query: 143 IVDPRL--FEYMSENDTSN--EKNTIVFKLHVLCERGGPRLTVKTNELKWLPNGSELPLE 198
I D + +Y + + + ++ F L V C R V T + K
Sbjct: 71 ISDDVVDRIQYTRDCQCMDFCPECSVEFTLDVKCTEDQTR-HVTTADFK----------- 118
Query: 199 TKPDSNPSSKPRTYTSFS-SSQDLLPEFSNNPIRPMLDITIARLGPGQEIELEAHAVKGI 257
SS PR S +D E+ +I I +L GQE++L A+A KG
Sbjct: 119 -------SSDPRVLPVTSRHREDDASEYGETD-----EILIVKLRKGQELKLRAYAKKGF 166
Query: 258 GKTHAKWSPVATAWYRMLPE 277
GK HAKW+P A + P+
Sbjct: 167 GKEHAKWNPTAGVSFEYDPD 186
>gi|328768461|gb|EGF78507.1| hypothetical protein BATDEDRAFT_20338 [Batrachochytrium
dendrobatidis JAM81]
Length = 285
Score = 92.8 bits (229), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 68/195 (34%), Positives = 95/195 (48%), Gaps = 41/195 (21%)
Query: 88 MEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRLGLIPIIVDPR 147
+ F L D ++ANA RR +IAE+PT+AI+ V +N+SV+ DE LAHRLGLIP+
Sbjct: 27 VSFILGNTDLSVANALRRTMIAEVPTVAIDLVEFESNSSVLTDEFLAHRLGLIPL----- 81
Query: 148 LFEYMSENDTSNEKNTIVFKLHVLCERGGPRLTVKTNELKWLPNGSELPLETKPDSNPSS 207
S + TI + C + P+ +V EL L + D
Sbjct: 82 ---------NSEQVGTITYTRDCSCTQYCPQCSV------------ELHLNVRCDEE--- 117
Query: 208 KPRTYTSFSSSQDLLPEFSNNPIRPML------DITIARLGPGQEIELEAHAVKGIGKTH 261
+T +S+DL+ S++ I P++ I IA+L GQEI L A KG K H
Sbjct: 118 ----FTREVTSRDLIS--SHSSIMPIIHGDDDSGIMIAKLRKGQEINLRCIAKKGTAKEH 171
Query: 262 AKWSPVATAWYRMLP 276
AKWSP A + P
Sbjct: 172 AKWSPCAGIAFEYDP 186
>gi|403157658|ref|XP_003307056.2| hypothetical protein PGTG_00006 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
gi|375163504|gb|EFP74050.2| hypothetical protein PGTG_00006 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
Length = 365
Score = 92.8 bits (229), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 69/209 (33%), Positives = 101/209 (48%), Gaps = 27/209 (12%)
Query: 74 NNFRVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVL 133
+ +V+V L F L GI+ +AN+ RR +IA+L T+AI V NTSV+ DE++
Sbjct: 17 SQLQVKVTELDDQHAAFILEGIELGLANSLRRTMIADLTTIAIHSVEFEENTSVLPDEMI 76
Query: 134 AHRLGLIPIIVDPRLFEYMS--ENDTS----NEKNTIVFKLHVLCERGGPRLTVKTNELK 187
AHRLGLIP+I + L +Y+ + D + + +I L C G L V +++L
Sbjct: 77 AHRLGLIPLISE-DLDKYLKNWQRDCTCLSYCDDCSIELVLSTKCTLVGDVLAVNSHDLV 135
Query: 188 WLPNGSELPLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPMLDITIARLGPGQEI 247
P E KP +T Q + I +L GQE+
Sbjct: 136 ITPR------EDGAHRGDVGKPYQFTMPGGEQP--------------GVLITKLRKGQEV 175
Query: 248 ELEAHAVKGIGKTHAKWSPVATAWYRMLP 276
L+ A+KGIG+ HAKWSPV+T + P
Sbjct: 176 RLKCRAIKGIGQEHAKWSPVSTIGFEYDP 204
>gi|389860853|ref|YP_006363093.1| DNA-directed RNA polymerase subunit D [Thermogladius cellulolyticus
1633]
gi|388525757|gb|AFK50955.1| DNA-directed RNA polymerase subunit D [Thermogladius cellulolyticus
1633]
Length = 282
Score = 92.8 bits (229), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 69/253 (27%), Positives = 110/253 (43%), Gaps = 37/253 (14%)
Query: 78 VEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRL 137
+EV+R + + + G+ + N+ RR ++AE+PTMA++ V+ N+SV DE +AHRL
Sbjct: 3 IEVLRREGNAIRLLVRGVKLHVLNSIRRAILAEVPTMAVDYVVFMENSSVFYDEYIAHRL 62
Query: 138 GLIPIIVDPRLFEYMSENDTSNEKNTIVFKLHVLCERGGPRLTVKTNELKWLPNGSELPL 197
GLIP+ + L +Y + VF + L
Sbjct: 63 GLIPLTSENALGKYKPPEECREAGEKGVFSEDCF-----------------------VKL 99
Query: 198 ETKPDSNPSSKPRTYTS--FSSSQDLLPEFSNNPIRPMLDITIARLGPGQEIELEAHAVK 255
E + P Y + D+ P + PI +L+ Q I+LEA+A
Sbjct: 100 ELSGEGTPGGVKTLYAGDLVTGDPDVRPVYEKIPIVQLLE--------NQRIKLEAYARL 151
Query: 256 GIGKTHAKWSPVATAWYRMLPEI-VLLEDVEDEDAEKLVKTCPVNVFDIEDIGSGKKRAT 314
G G+ H KWSP + A ++ + +I + E +K V+ CP V +D G
Sbjct: 152 GRGREHIKWSPASVASHKYIAKINIDREKCRYPGCKKCVEICPKQVIVEKD---GTVEVE 208
Query: 315 VAQPRACTLCREC 327
A+ C+LCR C
Sbjct: 209 EARLMDCSLCRLC 221
>gi|156055988|ref|XP_001593918.1| hypothetical protein SS1G_05346 [Sclerotinia sclerotiorum 1980]
gi|154703130|gb|EDO02869.1| hypothetical protein SS1G_05346 [Sclerotinia sclerotiorum 1980
UF-70]
Length = 335
Score = 92.8 bits (229), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 65/219 (29%), Positives = 103/219 (47%), Gaps = 46/219 (21%)
Query: 69 LDHFCNNFRVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVI 128
+D + +V++ ++F+L +D + AN+ RR +++E+PT+AI++V I NTSV+
Sbjct: 8 MDQESSGPQVKITEAGSHHVDFELSNVDLSFANSLRRTILSEVPTIAIDRVQIEANTSVL 67
Query: 129 QDEVLAHRLGLIPI---IVDPRLFEYMSENDTSNEKNTIVFKLHVLCERGGPRLTVKTNE 185
DE +AHRLGLIP+ D ++ + D + E ++ LH C G + V +
Sbjct: 68 ADEFIAHRLGLIPLNSKNCDDVIYTRDCDCDGNCELCSVTLTLHARC-TGDEIMKVYARD 126
Query: 186 L--------KWLPNGSELPLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPMLDIT 237
L KW+ N P+ T PD L
Sbjct: 127 LVVDPQRANKWVGN----PVITDPDG------------------------------LGPV 152
Query: 238 IARLGPGQEIELEAHAVKGIGKTHAKWSPVATAWYRMLP 276
IA+L GQE+ ++ A+KGI K HAKW+P A + P
Sbjct: 153 IAKLRKGQELRMKCIALKGIAKEHAKWAPTAAVGFEYDP 191
>gi|449268851|gb|EMC79688.1| DNA-directed RNA polymerase II subunit RPB3, partial [Columba
livia]
Length = 248
Score = 92.8 bits (229), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 65/190 (34%), Positives = 89/190 (46%), Gaps = 27/190 (14%)
Query: 99 IANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRLGLIPI----IVDPRLFEYMSE 154
+AN+ RR+ IAE+P +AI+ V I N+SV+ DE +AHRLGLIP+ IVD +
Sbjct: 3 VANSIRRVFIAEVPIIAIDWVQIDANSSVLHDEFIAHRLGLIPLTSDDIVDKMQYSRDCT 62
Query: 155 NDTSNEKNTIVFKLHVLCERGGPRLTVKTNELKWLPNGSELPLETKPDSNPSSKPRTYTS 214
D + ++ F L V C R + + S+ PR
Sbjct: 63 CDEFCPECSVEFTLDVRCNEDQTRHVTSRDLI-------------------SNNPRVIPV 103
Query: 215 FSSSQDLLPEFSNNPIRPMLDITIARLGPGQEIELEAHAVKGIGKTHAKWSPVATAWYRM 274
S S+D P N DI I +L GQE+ L A+A KG GK HAKW+P A +
Sbjct: 104 TSRSRDNDP----NDYVEQDDILIVKLRKGQELRLRAYAKKGFGKEHAKWNPTAGVAFEY 159
Query: 275 LPEIVLLEDV 284
P+ L V
Sbjct: 160 DPDNALRHTV 169
>gi|227828307|ref|YP_002830087.1| RNA polymerase insert [Sulfolobus islandicus M.14.25]
gi|229585537|ref|YP_002844039.1| RNA polymerase insert [Sulfolobus islandicus M.16.27]
gi|238620499|ref|YP_002915325.1| RNA polymerase insert [Sulfolobus islandicus M.16.4]
gi|385773987|ref|YP_005646554.1| RNA polymerase, subunit D [Sulfolobus islandicus HVE10/4]
gi|385776629|ref|YP_005649197.1| RNA polymerase insert [Sulfolobus islandicus REY15A]
gi|259494206|sp|C3N054.1|RPOD_SULIA RecName: Full=DNA-directed RNA polymerase subunit D
gi|259494207|sp|C4KJ93.1|RPOD_SULIK RecName: Full=DNA-directed RNA polymerase subunit D
gi|259494209|sp|C3MZ05.1|RPOD_SULIM RecName: Full=DNA-directed RNA polymerase subunit D
gi|227460103|gb|ACP38789.1| RNA polymerase insert [Sulfolobus islandicus M.14.25]
gi|228020587|gb|ACP55994.1| RNA polymerase insert [Sulfolobus islandicus M.16.27]
gi|238381569|gb|ACR42657.1| RNA polymerase insert [Sulfolobus islandicus M.16.4]
gi|323475377|gb|ADX85983.1| RNA polymerase insert [Sulfolobus islandicus REY15A]
gi|323478102|gb|ADX83340.1| RNA polymerase, subunit D [Sulfolobus islandicus HVE10/4]
Length = 265
Score = 92.8 bits (229), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 84/270 (31%), Positives = 119/270 (44%), Gaps = 52/270 (19%)
Query: 83 LTKDDMEFDLI--GIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRLGLI 140
L KDD DL+ G NA RR + +P M+I+ V N S + DE+LAHRL LI
Sbjct: 6 LHKDDKRIDLVFEGYPLEFVNAIRRAAMLYVPVMSIDDVYFIENNSPLYDEILAHRLALI 65
Query: 141 PIIVDPRLFEYM-SENDTSNEKNTIVFKLHVLCERGGPRLTVKTNELKWLPNGSELPLET 199
P + L Y E +N CE+ ++ ++ L
Sbjct: 66 PFTSEEALDTYRWPEECIECTEN---------CEKCYTKIYIEAEAL------------- 103
Query: 200 KPDSNPSSKPRT-YTSFSSSQDLLPEFSNNPIRPMLDITIARLGPGQEIELEAHAVKGIG 258
++P+ Y+ S+D P S PI DI I LG Q+I LEA G G
Sbjct: 104 -------NEPKMLYSKDIKSED--P--SIVPISG--DIPIVLLGANQKISLEARLRLGYG 150
Query: 259 KTHAKWSPVATAWYRMLPEIVLLEDVEDEDAEKLVKTCPVNVFDIEDIGSGKKRATVAQP 318
K HAK+ PV+ A R P++ +L + EK CP VF+++D + +V
Sbjct: 151 KEHAKFIPVSLAIVRYYPKVEIL-----GNCEKAATVCPEGVFELKD-----GKLSVKNE 200
Query: 319 RACTLCRECLRCGEEWEKRVSIRRVKDHFI 348
ACTLC ECLR + I ++D +I
Sbjct: 201 LACTLCEECLR---YCNGLIRISSIEDKYI 227
>gi|410074507|ref|XP_003954836.1| hypothetical protein KAFR_0A02650 [Kazachstania africana CBS 2517]
gi|372461418|emb|CCF55701.1| hypothetical protein KAFR_0A02650 [Kazachstania africana CBS 2517]
Length = 312
Score = 92.8 bits (229), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 66/203 (32%), Positives = 102/203 (50%), Gaps = 30/203 (14%)
Query: 77 RVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHR 136
+V++ TKD+++F L +D A+AN+ RR++IAE+PT+AI+ V + NT+V+ DE +AHR
Sbjct: 7 QVKIREATKDNVDFILSNVDLAMANSLRRVMIAEIPTLAIDSVEVETNTTVLADEFIAHR 66
Query: 137 LGLIPIIVDPRLFEYMSENDTSNEKNTIVFKLHVLCERGGPRLTVKTNELKWLPNGSELP 196
LGLIP+ S + + + CE + +V L G
Sbjct: 67 LGLIPL--------------QSTDIEQLEYSRDCFCEDHCDKCSVV---LTLQAVG---- 105
Query: 197 LETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPI---RPMLDITIARLGPGQEIELEAHA 253
E++ +N +K T S +LL +PI + + I +L GQE++L A
Sbjct: 106 -ESESTTNVYAKDLTIVS-----NLLGRNIGHPIIQDKEGNGVLICKLRKGQELKLTCIA 159
Query: 254 VKGIGKTHAKWSPVATAWYRMLP 276
KGI K HAKW P A + P
Sbjct: 160 KKGISKEHAKWCPAAAIEFEYDP 182
>gi|227831065|ref|YP_002832845.1| RNA polymerase insert [Sulfolobus islandicus L.S.2.15]
gi|229579946|ref|YP_002838345.1| RNA polymerase insert [Sulfolobus islandicus Y.G.57.14]
gi|229581393|ref|YP_002839792.1| RNA polymerase insert [Sulfolobus islandicus Y.N.15.51]
gi|259494208|sp|C3MJP7.1|RPOD_SULIL RecName: Full=DNA-directed RNA polymerase subunit D
gi|259494210|sp|C3NMQ0.1|RPOD_SULIN RecName: Full=DNA-directed RNA polymerase subunit D
gi|259494211|sp|C3N8R8.1|RPOD_SULIY RecName: Full=DNA-directed RNA polymerase subunit D
gi|227457513|gb|ACP36200.1| RNA polymerase insert [Sulfolobus islandicus L.S.2.15]
gi|228010661|gb|ACP46423.1| RNA polymerase insert [Sulfolobus islandicus Y.G.57.14]
gi|228012109|gb|ACP47870.1| RNA polymerase insert [Sulfolobus islandicus Y.N.15.51]
Length = 265
Score = 92.8 bits (229), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 84/270 (31%), Positives = 119/270 (44%), Gaps = 52/270 (19%)
Query: 83 LTKDDMEFDLI--GIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRLGLI 140
L KDD DL+ G NA RR + +P M+I+ V N S + DE+LAHRL LI
Sbjct: 6 LHKDDKRIDLVFEGYPLEFVNAIRRATMLYVPVMSIDDVYFIENNSPLYDEILAHRLALI 65
Query: 141 PIIVDPRLFEYM-SENDTSNEKNTIVFKLHVLCERGGPRLTVKTNELKWLPNGSELPLET 199
P + L Y E +N CE+ ++ ++ L
Sbjct: 66 PFTSEEALDTYRWPEECIECTEN---------CEKCYTKIYIEAEAL------------- 103
Query: 200 KPDSNPSSKPRT-YTSFSSSQDLLPEFSNNPIRPMLDITIARLGPGQEIELEAHAVKGIG 258
++P+ Y+ S+D P S PI DI I LG Q+I LEA G G
Sbjct: 104 -------NEPKMLYSKDIKSED--P--SIVPISG--DIPIVLLGANQKISLEARLRLGYG 150
Query: 259 KTHAKWSPVATAWYRMLPEIVLLEDVEDEDAEKLVKTCPVNVFDIEDIGSGKKRATVAQP 318
K HAK+ PV+ A R P++ +L + EK CP VF+++D + +V
Sbjct: 151 KEHAKFIPVSLAIVRYYPKVEIL-----GNCEKAATVCPEGVFELKD-----GKLSVKNE 200
Query: 319 RACTLCRECLRCGEEWEKRVSIRRVKDHFI 348
ACTLC ECLR + I ++D +I
Sbjct: 201 LACTLCEECLR---YCNGLIRISSIEDKYI 227
>gi|237823480|pdb|2WAQ|D Chain D, The Complete Structure Of The Archaeal 13-Subunit Dna-
Directed Rna Polymerase
gi|237823493|pdb|2WB1|D Chain D, The Complete Structure Of The Archaeal 13-Subunit Dna-
Directed Rna Polymerase
gi|237823508|pdb|2WB1|S Chain S, The Complete Structure Of The Archaeal 13-Subunit Dna-
Directed Rna Polymerase
gi|323462791|pdb|2Y0S|D Chain D, Crystal Structure Of Sulfolobus Shibatae Rna Polymerase In
P21 Space Group
gi|323462806|pdb|2Y0S|S Chain S, Crystal Structure Of Sulfolobus Shibatae Rna Polymerase In
P21 Space Group
gi|400260745|pdb|4AYB|D Chain D, Rnap At 3.2ang
gi|400260762|pdb|4B1O|D Chain D, Archaeal Rnap-Dna Binary Complex At 4.32ang
gi|400260781|pdb|4B1P|S Chain S, Archaeal Rnap-Dna Binary Complex At 4.32ang
gi|219814435|gb|ACL36491.1| RNA polymerase subunit 3 [Sulfolobus shibatae B12]
Length = 265
Score = 92.8 bits (229), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 83/269 (30%), Positives = 118/269 (43%), Gaps = 50/269 (18%)
Query: 83 LTKDDMEFDLI--GIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRLGLI 140
L KDD DL+ G NA RR + +P M+I+ V N S + DE+LAHRL LI
Sbjct: 6 LHKDDKRIDLVFEGYPLEFVNAIRRAAMLYVPVMSIDDVYFIENNSPLYDEILAHRLALI 65
Query: 141 PIIVDPRLFEYMSENDTSNEKNTIVFKLHVLCERGGPRLTVKTNELKWLPNGSELPLETK 200
P + L Y + + CE+ ++ ++ L
Sbjct: 66 PFTSEEALDTYRWPEECIDCTEN--------CEKCYTKIYIEAEAL-------------- 103
Query: 201 PDSNPSSKPRT-YTSFSSSQDLLPEFSNNPIRPMLDITIARLGPGQEIELEAHAVKGIGK 259
++P+ Y+ S+D P S PI DI I LG Q+I LEA G GK
Sbjct: 104 ------NEPKMLYSKDIKSED--P--SIVPISG--DIPIVLLGANQKISLEARLRLGYGK 151
Query: 260 THAKWSPVATAWYRMLPEIVLLEDVEDEDAEKLVKTCPVNVFDIEDIGSGKKRATVAQPR 319
HAK+ PV+ A R P++ +L + EK CP VF+++D + +V
Sbjct: 152 EHAKFIPVSLAIVRYYPKVEIL-----GNCEKGATVCPEGVFELKD-----GKLSVKNEL 201
Query: 320 ACTLCRECLRCGEEWEKRVSIRRVKDHFI 348
ACTLC ECLR + I V+D +I
Sbjct: 202 ACTLCEECLR---YCNGLIRISSVEDKYI 227
>gi|284998561|ref|YP_003420329.1| RNA polymerase, insert [Sulfolobus islandicus L.D.8.5]
gi|284446457|gb|ADB87959.1| RNA polymerase, insert [Sulfolobus islandicus L.D.8.5]
Length = 265
Score = 92.8 bits (229), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 84/270 (31%), Positives = 119/270 (44%), Gaps = 52/270 (19%)
Query: 83 LTKDDMEFDLI--GIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRLGLI 140
L KDD DL+ G NA RR + +P M+I+ V N S + DE+LAHRL LI
Sbjct: 6 LHKDDKRIDLVFEGYPLEFVNAIRRATMLYVPVMSIDDVYFIENNSPLYDEILAHRLALI 65
Query: 141 PIIVDPRLFEYM-SENDTSNEKNTIVFKLHVLCERGGPRLTVKTNELKWLPNGSELPLET 199
P + L Y E +N CE+ ++ ++ L
Sbjct: 66 PFTSEEALDTYRWPEECIECTEN---------CEKCYTKIYIEAEAL------------- 103
Query: 200 KPDSNPSSKPRT-YTSFSSSQDLLPEFSNNPIRPMLDITIARLGPGQEIELEAHAVKGIG 258
++P+ Y+ S+D P S PI DI I LG Q+I LEA G G
Sbjct: 104 -------NEPKMLYSKDIKSED--P--SIVPISG--DIPIVLLGANQKISLEARLRLGYG 150
Query: 259 KTHAKWSPVATAWYRMLPEIVLLEDVEDEDAEKLVKTCPVNVFDIEDIGSGKKRATVAQP 318
K HAK+ PV+ A R P++ +L + EK CP VF+++D + +V
Sbjct: 151 KEHAKFIPVSLAIVRYYPKVEIL-----GNCEKAATVCPEGVFELKD-----GKLSVKNE 200
Query: 319 RACTLCRECLRCGEEWEKRVSIRRVKDHFI 348
ACTLC ECLR + I ++D +I
Sbjct: 201 LACTLCEECLR---YCNGLIRISSIEDKYI 227
>gi|156097458|ref|XP_001614762.1| DNA-directed RNA polymerase II [Plasmodium vivax Sal-1]
gi|148803636|gb|EDL45035.1| DNA-directed RNA polymerase II, putative [Plasmodium vivax]
Length = 333
Score = 92.4 bits (228), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 67/197 (34%), Positives = 97/197 (49%), Gaps = 21/197 (10%)
Query: 78 VEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRL 137
VE+ +LTKD+M F L + +ANA RRI+++E+PT+AI+ V + NTS DE LAHRL
Sbjct: 14 VEITKLTKDEMTFVLHNSNTGMANALRRIMLSEIPTLAIDVVNVYENTSPFHDEFLAHRL 73
Query: 138 GLIPIIVDPRLFEYMSENDTSNEKNTIVFKLHVLCERGGPRLTVKTNELKWLPNGSELPL 197
GLIPI D++N KN F+ C+ + T++ N S++ +
Sbjct: 74 GLIPI-------------DSTNVKN-FEFREKCKCKETCSKCTIQYLIQVKCNNVSKIEI 119
Query: 198 ETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPMLDITIARLGPGQEIELEAHAVKGI 257
+ +P + E NN + I I L Q + ++ A KGI
Sbjct: 120 THHDIESVEHEPNV------PMPVPLEDRNNQMAESNAIPIVTLSKNQTLHMKLIATKGI 173
Query: 258 GKTHAKWSPVATAWYRM 274
GK HAKW P A YR+
Sbjct: 174 GKMHAKWIP-ANVSYRI 189
>gi|358055923|dbj|GAA98268.1| hypothetical protein E5Q_04951 [Mixia osmundae IAM 14324]
Length = 368
Score = 92.4 bits (228), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 73/230 (31%), Positives = 109/230 (47%), Gaps = 34/230 (14%)
Query: 54 YSGAYAS-MGVDNSLQLDHFCNNFRVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELP 112
YS A+ S + +D + N V+ I+ D ++F G+D ++AN RR+L +E+P
Sbjct: 4 YSTAFTSKLALDPPKTTNGLEQNIAVQEIQ--HDRVKFAWEGVDLSLANGLRRVLQSEIP 61
Query: 113 TMAIEKVLIANNTSVIQDEVLAHRLGLIPIIVDPRLFEYMSENDTSN-----EKNTIVFK 167
T+AI + + +N+SV+ DE LAHRL LIP+ + E D ++ T++ +
Sbjct: 62 TLAIGYISVKHNSSVLPDEFLAHRLALIPLQSTGIAHKLEKERDLCGCDDGCDECTVMLQ 121
Query: 168 LHVLCERGGPRLTVKTNELKWLPNGSELPLETKPDSNPSSKPRTYTSFSSSQDLLPEFSN 227
L V C G +L V + +L LP + D P + E SN
Sbjct: 122 LDVACRSAG-KLDVTSKDLVVLPR------QDGQDRGGFGMP------------MSEHSN 162
Query: 228 NPIRPMLDITIARLGPGQEIELEAHAVKGIGKTHAKWSPVATAWYRMLPE 277
I IA+LGPGQ I L A A +GI HAK PV+T + P
Sbjct: 163 G-------ILIAQLGPGQRITLLATAHRGIALDHAKHCPVSTVGFEYDPH 205
>gi|405121028|gb|AFR95798.1| RNA polymerase II subunit 3 [Cryptococcus neoformans var. grubii
H99]
Length = 377
Score = 92.4 bits (228), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 70/211 (33%), Positives = 105/211 (49%), Gaps = 10/211 (4%)
Query: 74 NNFRVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVL 133
N R+ + L + D F L G++ A AN+ RR+++A++PT+AI++VL NT+ + DE++
Sbjct: 23 NQPRLLLRNLNESDATFHLSGVELAYANSLRRVMMADVPTIAIDQVLFMQNTTPLADEMI 82
Query: 134 AHRLGLIPIIVD--PRLFEYMSENDTSNEKNTIVFKLHVLCERGGP------RLTVKTNE 185
AHRLGLIP+I + Y + D + L + G R+T E
Sbjct: 83 AHRLGLIPLISRNVSKGLRYTRDCDCDEGCYYCMVTLRLKVAFSGNDGEQFMRVTSDMLE 142
Query: 186 LKWLPNGSELPLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPMLDITIARLGPGQ 245
+ P G P P S + R + + P NP P I IA++G GQ
Sbjct: 143 VVPSPGGPPPPNPYGPPPELSEEDRIIINNRDPEMGQPIGKGNPTVP--PILIAKMGKGQ 200
Query: 246 EIELEAHAVKGIGKTHAKWSPVATAWYRMLP 276
EI++ A KGI K HAKWSP++T + P
Sbjct: 201 EIDVLCKAYKGIAKHHAKWSPLSTVAFEYDP 231
>gi|395332694|gb|EJF65072.1| RBP11-like subunits of RNA polymerase [Dichomitus squalens LYAD-421
SS1]
Length = 410
Score = 92.0 bits (227), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 63/212 (29%), Positives = 107/212 (50%), Gaps = 28/212 (13%)
Query: 78 VEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRL 137
V + L K+ + F L +D + AN+FRR++IA++PT+AI+ V I NT+V+ DE +AHRL
Sbjct: 10 VRIRDLKKNSVNFVLENVDLSFANSFRRVMIADIPTVAIDMVEIETNTTVLPDEFIAHRL 69
Query: 138 GLIPIIV----DPRLFEYMSENDTSNEKNTIVFKLHVLCERGGPRLTVKTNELKWLPNGS 193
G+IP++ + + + + I +L+V C + + +N L+ +
Sbjct: 70 GMIPLVSTMCDEAMRYTRDCTCEVRCQYCAIELQLNVACHEANTTMHITSNMLEVV---- 125
Query: 194 ELPLETKPDSNPSSKPRTYTSFSS---SQDLLPEFSN--NPIRP----MLDITIARLGPG 244
P++KP +Y S+ + ++L N +PI + I I ++ G
Sbjct: 126 -----------PTNKPGSYGSYDTDDGGEELAKRVENFGHPIGKDDPDVPPILICKIRMG 174
Query: 245 QEIELEAHAVKGIGKTHAKWSPVATAWYRMLP 276
QE+ + A KGI K HAKWSP + + P
Sbjct: 175 QELRVRCIAKKGIAKEHAKWSPCSAVAFEYDP 206
>gi|384498629|gb|EIE89120.1| RNA polymerase Rpb3/Rpb11 dimerization domain-containing protein
[Rhizopus delemar RA 99-880]
Length = 201
Score = 92.0 bits (227), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 61/199 (30%), Positives = 94/199 (47%), Gaps = 29/199 (14%)
Query: 78 VEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRL 137
+ + LTKD + F L D ++ANA RR++IAE+PT+AI+ V I NT+V+ DE +AHRL
Sbjct: 14 ITIRELTKDRINFILSDTDLSVANALRRVMIAEVPTVAIDMVEIETNTTVLADEFIAHRL 73
Query: 138 GLIPIIVDPRLFEYMSENDTSNEKNTIVFKLHVLCERGGPRLTVKTNELKWLPNGSELPL 197
G++PI S E + + C + +V EL L
Sbjct: 74 GMVPI--------------DSREVEKLRYTRDCTCSQYCSECSV------------ELTL 107
Query: 198 ETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPMLDITIARLGPGQEIELEAHAVKGI 257
K + + T S++ P + +L + +L G E++L+ A KG+
Sbjct: 108 HVKCTDDRTKDVTTRDLMSTNPSFTPVLQDKDDSGVL---LVKLRKGHELKLKCIAKKGV 164
Query: 258 GKTHAKWSPVATAWYRMLP 276
K HAKWSPV+ + P
Sbjct: 165 AKEHAKWSPVSGVAFEYDP 183
>gi|409080609|gb|EKM80969.1| hypothetical protein AGABI1DRAFT_112673 [Agaricus bisporus var.
burnettii JB137-S8]
gi|426197524|gb|EKV47451.1| hypothetical protein AGABI2DRAFT_192637 [Agaricus bisporus var.
bisporus H97]
Length = 380
Score = 92.0 bits (227), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 67/204 (32%), Positives = 101/204 (49%), Gaps = 17/204 (8%)
Query: 78 VEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRL 137
V + L KD + F L +D A AN+FRR+++A+LPT+AI+ V I NT+V+ DE +AHRL
Sbjct: 11 VRIRELAKDKVNFVLENVDLAFANSFRRVMMADLPTVAIDMVEIEINTTVLPDEFIAHRL 70
Query: 138 GLIPIIVDPRLFEYMSENDTSNEKN----TIVFKLHVLCERGGPRLTVKTNELKWLPNGS 193
G IP++ D + +I+ LHV C + V +N L +P
Sbjct: 71 GQIPLLSSNCDEAIRYTRDCTCLAGCPFCSIMLNLHVSCNDDN-TMNVTSNHLDIMPFPE 129
Query: 194 ELPLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNP-IRPMLDITIARLGPGQEIELEAH 252
+ +T P S + + P N+P P+L I ++ GQE++ +
Sbjct: 130 DQEQQTDPGEELSKRGEYFGH--------PVGKNDPNASPIL---ICKIRKGQELKAKCT 178
Query: 253 AVKGIGKTHAKWSPVATAWYRMLP 276
A KGI K HAKWSP + + P
Sbjct: 179 AKKGIAKEHAKWSPCSAVAFEYDP 202
>gi|134112527|ref|XP_775239.1| hypothetical protein CNBE5120 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|50257891|gb|EAL20592.1| hypothetical protein CNBE5120 [Cryptococcus neoformans var.
neoformans B-3501A]
Length = 377
Score = 91.7 bits (226), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 70/211 (33%), Positives = 105/211 (49%), Gaps = 10/211 (4%)
Query: 74 NNFRVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVL 133
N R+ + L + D F L G++ A AN+ RR+++A++PT+AI++VL NT+ + DE++
Sbjct: 23 NQPRLLLRNLNETDATFHLSGVELAYANSLRRVMMADVPTIAIDQVLFMQNTTPLADEMI 82
Query: 134 AHRLGLIPIIVD--PRLFEYMSENDTSNEKNTIVFKLHVLCERGGP------RLTVKTNE 185
AHRLGLIP+I + Y + D + L + G R+T E
Sbjct: 83 AHRLGLIPLISRNVSKGLRYTRDCDCDEGCYYCMVTLRLKVTFSGNDGEQFMRVTSDMLE 142
Query: 186 LKWLPNGSELPLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPMLDITIARLGPGQ 245
+ P G P P S + R + + P NP P I IA++G GQ
Sbjct: 143 VVPSPGGPPPPNPYGPPPELSEEDRIIINNRDPEMGQPIGKGNPTVP--PILIAKMGKGQ 200
Query: 246 EIELEAHAVKGIGKTHAKWSPVATAWYRMLP 276
EI++ A KGI K HAKWSP++T + P
Sbjct: 201 EIDVLCKAYKGIAKHHAKWSPLSTVAFEYDP 231
>gi|393217477|gb|EJD02966.1| insert subdomain of RNA polymerase alpha subunit [Fomitiporia
mediterranea MF3/22]
Length = 284
Score = 91.7 bits (226), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 63/197 (31%), Positives = 98/197 (49%), Gaps = 17/197 (8%)
Query: 85 KDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRLGLIPIIV 144
KD + F L +D + AN+ RR+++A++PT+AI+ V + NTSV+ DE +AHRLG++P+I
Sbjct: 15 KDRVNFVLENVDLSFANSIRRVMMADVPTLAIDIVELEMNTSVLPDEFIAHRLGMVPLIS 74
Query: 145 DPRLFEYMSENDTSNEKN----TIVFKLHVLCERGGPRLTVKTNELKWLPNGSELPLETK 200
D + E + T+ L V C G L V +N L +P L + +
Sbjct: 75 TNCEEAIRYNRDCTCEVHCDFCTVSLMLDVTCGEDG-NLDVTSNHLDVIPVNYTLLNDGE 133
Query: 201 PDSNPSSKPRTYTSFSSSQDLLPEFSNNP-IRPMLDITIARLGPGQEIELEAHAVKGIGK 259
+ +P + P P + P+L I ++ PGQ+I+ A KGI K
Sbjct: 134 GGEEINKRPEKFGC--------PVGQGEPGVHPVL---ICKMRPGQQIKARCIAKKGIAK 182
Query: 260 THAKWSPVATAWYRMLP 276
HAKWSP + + P
Sbjct: 183 EHAKWSPCSAVAFEYDP 199
>gi|430812471|emb|CCJ30120.1| unnamed protein product, partial [Pneumocystis jirovecii]
Length = 289
Score = 91.7 bits (226), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 66/201 (32%), Positives = 103/201 (51%), Gaps = 34/201 (16%)
Query: 77 RVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHR 136
+V + + K+ ++F L +D A AN+ RR+++AE+PT+AI+ V I NTSV+ DE + HR
Sbjct: 8 QVTIRNIEKNSIDFVLSNVDLAFANSLRRVILAEVPTVAIDLVEIEINTSVLADEFITHR 67
Query: 137 LGLIPIIVDPRLFEYMSENDTSNEKNTIVFKLHVLCERGGPRLTVKTNELKWLPNGSELP 196
LG+IP+ D++N + +V+ C++ + +V +L
Sbjct: 68 LGMIPL-------------DSANVDDKLVYTRDCDCDQYCTKCSV------------QLT 102
Query: 197 LETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRP-MLDITIARLGPGQEIELEAHAVK 255
L K S+ T S+DL+ E N+ I P I I +L QE+ L+ A K
Sbjct: 103 LYAKCTSDG-------TMDVYSKDLIVEH-NSTIDPDGKGILICKLRKAQELRLKCIAKK 154
Query: 256 GIGKTHAKWSPVATAWYRMLP 276
GI K HAKWSPV+ + P
Sbjct: 155 GIAKEHAKWSPVSAIAFEYDP 175
>gi|58267768|ref|XP_571040.1| RNA polymerase II subunit 3 [Cryptococcus neoformans var.
neoformans JEC21]
gi|57227274|gb|AAW43733.1| RNA polymerase II subunit 3, putative [Cryptococcus neoformans var.
neoformans JEC21]
Length = 377
Score = 91.7 bits (226), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 70/211 (33%), Positives = 105/211 (49%), Gaps = 10/211 (4%)
Query: 74 NNFRVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVL 133
N R+ + L + D F L G++ A AN+ RR+++A++PT+AI++VL NT+ + DE++
Sbjct: 23 NQPRLLLRNLNETDATFHLSGVELAYANSLRRVMMADVPTIAIDQVLFMQNTTPLADEMI 82
Query: 134 AHRLGLIPIIVD--PRLFEYMSENDTSNEKNTIVFKLHVLCERGGP------RLTVKTNE 185
AHRLGLIP+I + Y + D + L + G R+T E
Sbjct: 83 AHRLGLIPLISRNVSKGLRYTRDCDCDEGCYYCMVTLRLKVTFSGNDGEQFMRVTSDMLE 142
Query: 186 LKWLPNGSELPLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPMLDITIARLGPGQ 245
+ P G P P S + R + + P NP P I IA++G GQ
Sbjct: 143 VVPSPGGPPPPNPYGPPPELSEEDRIIINNRDPEMGQPIGKGNPTVP--PILIAKMGKGQ 200
Query: 246 EIELEAHAVKGIGKTHAKWSPVATAWYRMLP 276
EI++ A KGI K HAKWSP++T + P
Sbjct: 201 EIDVLCKAYKGIAKHHAKWSPLSTVAFEYDP 231
>gi|253744264|gb|EET00492.1| DNA-directed RNA polymerase RPB3 [Giardia intestinalis ATCC 50581]
Length = 326
Score = 91.7 bits (226), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 70/258 (27%), Positives = 120/258 (46%), Gaps = 29/258 (11%)
Query: 78 VEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRL 137
++++ T +E ++ G+D + N RR + A++PT+AI+ V +N++ + +E +AHRL
Sbjct: 5 IKILSKTDLKLELEIRGVDISYVNGLRRAIYADVPTLAIDIVKFLDNSTTLTEEFIAHRL 64
Query: 138 GLIPIIVDPRLFEYMSENDTSNEKNTIVFKLHVLCERGGPRLTVKTNELKWLPNGSELPL 197
GLIP+ L +S T +E+++ + +G ++ T +++ + +
Sbjct: 65 GLIPLRTAGPL-SAISYWYTCDEEHSTEIECRECTFKGTLNVSNDTTKIRVVTDK----- 118
Query: 198 ETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPMLDITIARLGPGQEIELEAHAVKGI 257
+ K D S + S+ L P P+L +L PG+ I +A K
Sbjct: 119 DIKFDHGGIS------TLSNYMGSLLGVIEAPSIPIL-----KLAPGESINALLYARKDR 167
Query: 258 GKTHAKWSPVATAWYRMLPEIVLLEDVE-------DEDAEKLVKTCPVNVFDIEDIGSGK 310
GK HAKW P A R L +I+L ++ E D + TCP VF IE+
Sbjct: 168 GKIHAKWCPAACVVLRPLAKIILCDEFEKLPQQHNDIARSYISDTCPRKVFTIEN----- 222
Query: 311 KRATVAQPRACTLCRECL 328
+R V P C C +C
Sbjct: 223 RRVVVKDPNNCIFCNDCF 240
>gi|323337216|gb|EGA78470.1| Rpb3p [Saccharomyces cerevisiae Vin13]
Length = 240
Score = 91.7 bits (226), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 66/204 (32%), Positives = 104/204 (50%), Gaps = 32/204 (15%)
Query: 77 RVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHR 136
+V++ +KD+++F L +D A+AN+ RR++IAE+PT+AI+ V + NT+V+ DE +AHR
Sbjct: 7 QVKIREASKDNVDFILSNVDLAMANSLRRVMIAEIPTLAIDSVEVETNTTVLADEFIAHR 66
Query: 137 LGLIPI-IVDPRLFEYMSENDTSNEKNTIVFKLHVLCERGGPRLTVKTNELKWLPNGSEL 195
LGLIP+ +D EY D E + C++ LT++
Sbjct: 67 LGLIPLQSMDIEQLEY--SRDCFCEDH---------CDKCSVVLTLQAFG---------- 105
Query: 196 PLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPI---RPMLDITIARLGPGQEIELEAH 252
E++ +N SK S +L+ +PI + + I +L GQE++L
Sbjct: 106 --ESESTTNVYSKDLVIVS-----NLMGRNIGHPIIQDKEGNGVLICKLRKGQELKLTCV 158
Query: 253 AVKGIGKTHAKWSPVATAWYRMLP 276
A KGI K HAKW P A + P
Sbjct: 159 AKKGIAKEHAKWGPAAAIEFEYDP 182
>gi|222445013|ref|ZP_03607528.1| hypothetical protein METSMIALI_00629 [Methanobrevibacter smithii
DSM 2375]
gi|222434578|gb|EEE41743.1| RNA polymerase Rpb3/Rpb11 dimerization domain protein
[Methanobrevibacter smithii DSM 2375]
Length = 274
Score = 91.7 bits (226), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 71/257 (27%), Positives = 112/257 (43%), Gaps = 50/257 (19%)
Query: 76 FRVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAH 135
+EV T D++ F + + NA RR + +P +AIE V I N S + +EVLAH
Sbjct: 1 MEIEVKSQTDDEIVFIVRDAEVPFINAIRRCAMVNVPKIAIEDVNIMRNDSAMFNEVLAH 60
Query: 136 RLGLIPIIVDPRLFEYMS--ENDTSNEKNTIVFKLHVLCERGGPRLTVKTNELKWLPNGS 193
RLGL P++ + E + +D E N+++F L + GP++
Sbjct: 61 RLGLTPLVSNMDAIEGLPLPGDDDYEENNSVMFSL----KEEGPKVVY------------ 104
Query: 194 ELPLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPMLD-ITIARLGPGQEIELEAH 252
S+DL+ S++ I+P+ D I + +L G+++ +EA
Sbjct: 105 ------------------------SKDLIS--SDSKIKPVYDTIPLVKLKEGEKLNIEAV 138
Query: 253 AVKGIGKTHAKWSPVATAWYRMLPEIVLLEDVEDEDAEKLVKTCPVNVFDIEDIGSGKKR 312
A G GK HAKW P Y+ PEI EDV + + CP V + K
Sbjct: 139 AKVGYGKEHAKWMPTTVCVYKQYPEITFNEDVGID--YECADACPRGVLKSD---KRSKE 193
Query: 313 ATVAQPRACTLCRECLR 329
+ C +C+ C+R
Sbjct: 194 IKILDIENCAMCKSCVR 210
>gi|323348153|gb|EGA82407.1| Rpb3p [Saccharomyces cerevisiae Lalvin QA23]
Length = 240
Score = 91.7 bits (226), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 66/204 (32%), Positives = 104/204 (50%), Gaps = 32/204 (15%)
Query: 77 RVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHR 136
+V++ +KD+++F L +D A+AN+ RR++IAE+PT+AI+ V + NT+V+ DE +AHR
Sbjct: 7 QVKIREASKDNVDFILSNVDLAMANSLRRVMIAEIPTLAIDSVEVETNTTVLADEFIAHR 66
Query: 137 LGLIPI-IVDPRLFEYMSENDTSNEKNTIVFKLHVLCERGGPRLTVKTNELKWLPNGSEL 195
LGLIP+ +D EY D E + C++ LT++
Sbjct: 67 LGLIPLQSMDIEQLEY--SRDCFCEDH---------CDKCSVVLTLQAF----------- 104
Query: 196 PLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPI---RPMLDITIARLGPGQEIELEAH 252
E++ +N SK S +L+ +PI + + I +L GQE++L
Sbjct: 105 -XESESTTNVYSKDLVIVS-----NLMGRNIGHPIIQDKEGNGVLICKLRKGQELKLTCV 158
Query: 253 AVKGIGKTHAKWSPVATAWYRMLP 276
A KGI K HAKW P A + P
Sbjct: 159 AKKGIAKEHAKWGPAAAIEFEYDP 182
>gi|148643488|ref|YP_001274001.1| DNA-directed RNA polymerase subunit D [Methanobrevibacter smithii
ATCC 35061]
gi|261350417|ref|ZP_05975834.1| RNA polymerase Rpb3/Rpb11 dimerization domain protein
[Methanobrevibacter smithii DSM 2374]
gi|166229318|sp|A5UN55.1|RPOD_METS3 RecName: Full=DNA-directed RNA polymerase subunit D
gi|148552505|gb|ABQ87633.1| DNA-directed RNA polymerase, subunit D, RpoD [Methanobrevibacter
smithii ATCC 35061]
gi|288861200|gb|EFC93498.1| RNA polymerase Rpb3/Rpb11 dimerization domain protein
[Methanobrevibacter smithii DSM 2374]
Length = 274
Score = 91.7 bits (226), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 71/257 (27%), Positives = 112/257 (43%), Gaps = 50/257 (19%)
Query: 76 FRVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAH 135
+EV T D++ F + + NA RR + +P +AIE V I N S + +EVLAH
Sbjct: 1 MEIEVKSQTDDEIVFIVRDAEVPFINAIRRCAMVNVPKIAIEDVNIMRNDSAMFNEVLAH 60
Query: 136 RLGLIPIIVDPRLFEYMS--ENDTSNEKNTIVFKLHVLCERGGPRLTVKTNELKWLPNGS 193
RLGL P++ + E + +D E N+++F L + GP++
Sbjct: 61 RLGLTPLVSNMDAIEGLPLPGDDDYEENNSVMFSL----KEEGPKVVY------------ 104
Query: 194 ELPLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPMLD-ITIARLGPGQEIELEAH 252
S+DL+ S++ I+P+ D I + +L G+++ +EA
Sbjct: 105 ------------------------SKDLIS--SDSKIKPVYDTIPLVKLKEGEKLNIEAV 138
Query: 253 AVKGIGKTHAKWSPVATAWYRMLPEIVLLEDVEDEDAEKLVKTCPVNVFDIEDIGSGKKR 312
A G GK HAKW P Y+ PEI EDV + + CP V + K
Sbjct: 139 AKVGYGKEHAKWMPTTVCVYKQYPEITFNEDVGID--YECADACPRGVLKSD---KRSKE 193
Query: 313 ATVAQPRACTLCRECLR 329
+ C +C+ C+R
Sbjct: 194 IKILDIEDCAMCKSCVR 210
>gi|387595515|gb|EIJ93139.1| RNA polymerase Rpb3/Rpb11 dimerization domain-containing protein
[Nematocida parisii ERTm1]
Length = 297
Score = 91.3 bits (225), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 59/190 (31%), Positives = 94/190 (49%), Gaps = 43/190 (22%)
Query: 95 IDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRLGLIPIIVDPRLFEYMSE 154
ID ++ NA RR +I+++PT+AI V I N +V+ DE+L+HRLGLIPII D FE + +
Sbjct: 53 IDPSVLNAMRRTIISDVPTVAIHWVYIRENETVMADEILSHRLGLIPIIADAEDFERVVK 112
Query: 155 N------DTSNEKNTIVFKLHVLCERGGPRLTVKTNELKWLPNGSELPLETKPDSNPSSK 208
+KN+I +L V+ LTV++N++K L
Sbjct: 113 TPELDPFTELTDKNSIQMEL-VITNNTDKILTVRSNDIKILSK----------------- 154
Query: 209 PRTYTSFSSSQDLLPEFSNNPIRPMLDITIARLGPGQEIELEAHAVKGIGKTHAKWSPVA 268
+N I+ ++ I RL PG++IE A+ G G+ H+KW P +
Sbjct: 155 -----------------TNAAIKQ--NVIITRLVPGKKIECRLFAIIGTGREHSKWMPTS 195
Query: 269 TAWYRMLPEI 278
+YR + ++
Sbjct: 196 VCYYRTIKKL 205
>gi|291230540|ref|XP_002735226.1| PREDICTED: polymerase (RNA) I polypeptide C, 30kDa-like, partial
[Saccoglossus kowalevskii]
Length = 202
Score = 91.3 bits (225), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 61/167 (36%), Positives = 85/167 (50%), Gaps = 39/167 (23%)
Query: 155 NDTSNEKNTIVFKLHVLCERG--GPR-----------LTVKTNELKWLPNGSELPLETKP 201
+D ++TI F+L V C R P+ V T +LKW+P G++ + +
Sbjct: 1 DDEGTTEDTIEFQLKVKCTRNPHAPKDATDPDEMYRHWRVTTKDLKWVPFGNQGDIYSGD 60
Query: 202 DSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPMLDITIARLGPGQEIELEAHAVKGIGKTH 261
D S D DI IA+L PGQEI+++ H VKG+GK H
Sbjct: 61 D------------IYSVHD--------------DILIAKLRPGQEIDVKVHCVKGLGKDH 94
Query: 262 AKWSPVATAWYRMLPEIVLLEDVEDEDAEKLVKTCPVNVFDIEDIGS 308
AK+SPVATA YR+LPE+ L + V E AE+L KT V +++DIG
Sbjct: 95 AKFSPVATASYRLLPEMKLTKPVVGEQAERLAKTFSPRVIEVQDIGG 141
>gi|154310335|ref|XP_001554499.1| RNA polymerase II subunit 3 [Botryotinia fuckeliana B05.10]
gi|347828820|emb|CCD44517.1| similar to DNA-directed RNA polymerase II subunit RPB3 [Botryotinia
fuckeliana]
Length = 336
Score = 91.3 bits (225), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 64/219 (29%), Positives = 103/219 (47%), Gaps = 46/219 (21%)
Query: 69 LDHFCNNFRVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVI 128
+D + +V++ ++F+L +D + AN+ RR +++E+PT+AI++V I NTSV+
Sbjct: 8 MDQESSGPQVKITEAGSHHVDFELSNVDLSFANSLRRTVLSEVPTIAIDRVQIEANTSVL 67
Query: 129 QDEVLAHRLGLIPI---IVDPRLFEYMSENDTSNEKNTIVFKLHVLCERGGPRLTVKTNE 185
DE +AHRLGLIP+ D ++ + + + E ++ LH C G + V +
Sbjct: 68 ADEFIAHRLGLIPLNSKNCDDVIYTRDCDCEGNCELCSVTLTLHARC-TGDEIMKVYARD 126
Query: 186 L--------KWLPNGSELPLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPMLDIT 237
L KW+ N P+ T PD L
Sbjct: 127 LVVDPQRANKWVGN----PVITDPDG------------------------------LGPV 152
Query: 238 IARLGPGQEIELEAHAVKGIGKTHAKWSPVATAWYRMLP 276
IA+L GQE+ ++ A+KGI K HAKW+P A + P
Sbjct: 153 IAKLRKGQELRMKCIALKGIAKEHAKWAPTAAVGFEYDP 191
>gi|160331749|ref|XP_001712581.1| rpb3 [Hemiselmis andersenii]
gi|159766030|gb|ABW98256.1| rpb3 [Hemiselmis andersenii]
Length = 307
Score = 91.3 bits (225), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 69/235 (29%), Positives = 115/235 (48%), Gaps = 30/235 (12%)
Query: 78 VEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRL 137
+E++ L+ + + L + +I N+ RR++I E+PT AI+ + I N+SV+ DE L+HRL
Sbjct: 6 LEILNLSNYESKIILKETNISILNSLRRVMINEVPTFAIDLLFIEINSSVMHDEFLSHRL 65
Query: 138 GLIPIIVD-PRLFEYMSENDTSN--EKNTIVFKLHVLCERGGPRLTVKTNELKWLPNGSE 194
GL+P+ + F Y E D K + F L + E+ P+ ++ + +L +
Sbjct: 66 GLLPLFSNFAHEFRYTRECDCEQYCSKCSFKFSLDIYAEK-FPQ-SIFSTDLNTIDKKEN 123
Query: 195 LPLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPMLDITIARLGPGQEIELEAHAV 254
+ P Y+S + D P I I +LG GQ I+L A A
Sbjct: 124 FFYQ-------QINPIHYSSLKETLDQKP------------ILIGKLGIGQRIKLVAIAK 164
Query: 255 KGIGKTHAKWSPVATAWYRMLPEIV-----LLEDVEDEDAEKLVKTCPVNVFDIE 304
KGIGK HAKWSP++ + +P + + + + + EK+ + P N+F E
Sbjct: 165 KGIGKEHAKWSPISVIKIKKIPFFLFDLKEINKKINSKTKEKISQILP-NLFIFE 218
>gi|353251635|pdb|3J0K|C Chain C, Orientation Of Rna Polymerase Ii Within The Human
Vp16-Mediator-Pol Ii-Tfiif Assembly
Length = 268
Score = 91.3 bits (225), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 66/204 (32%), Positives = 104/204 (50%), Gaps = 32/204 (15%)
Query: 77 RVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHR 136
+V++ +KD+++F L +D A+AN+ RR++IAE+PT+AI+ V + NT+V+ DE +AHR
Sbjct: 7 QVKIREASKDNVDFILSNVDLAMANSLRRVMIAEIPTLAIDSVEVETNTTVLADEFIAHR 66
Query: 137 LGLIPI-IVDPRLFEYMSENDTSNEKNTIVFKLHVLCERGGPRLTVKTNELKWLPNGSEL 195
LGLIP+ +D EY D E + C++ LT++
Sbjct: 67 LGLIPLQSMDIEQLEY--SRDCFCEDH---------CDKCSVVLTLQAFG---------- 105
Query: 196 PLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPI---RPMLDITIARLGPGQEIELEAH 252
E++ +N SK S +L+ +PI + + I +L GQE++L
Sbjct: 106 --ESESTTNVYSKDLVIVS-----NLMGRNIGHPIIQDKEGNGVLICKLRKGQELKLTCV 158
Query: 253 AVKGIGKTHAKWSPVATAWYRMLP 276
A KGI K HAKW P A + P
Sbjct: 159 AKKGIAKEHAKWGPAAAIEFEYDP 182
>gi|221054724|ref|XP_002258501.1| dna-directed rna polymerase II [Plasmodium knowlesi strain H]
gi|193808570|emb|CAQ39273.1| dna-directed rna polymerase II, putative [Plasmodium knowlesi
strain H]
Length = 334
Score = 91.3 bits (225), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 69/202 (34%), Positives = 100/202 (49%), Gaps = 31/202 (15%)
Query: 78 VEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRL 137
VE+ +LTKD+M F L + +ANA RRI+++E+PT+AI+ V + NTS DE LAHRL
Sbjct: 15 VEITKLTKDEMTFVLHNSNTGMANALRRIMLSEIPTLAIDVVNVYENTSPFHDEFLAHRL 74
Query: 138 GLIPIIVDPR---LFEYMSENDTSN--EKNTIVFKLHVLCERGGPRLTVKTNELKWLPNG 192
GLIPI D R FE+ + K TI + + V C ++ V +++ + +
Sbjct: 75 GLIPI--DSRNVKNFEFREKCKCKETCSKCTIQYLIQVKC-NNVSKIDVTHYDIESVEHE 131
Query: 193 SELPLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPMLDITIARLGPGQEIELEAH 252
+P+ P + E NN + I I L Q + ++
Sbjct: 132 PNVPM-----------PVPF-----------EDRNNKMAQSNAIPIVTLSKNQTLHMKLI 169
Query: 253 AVKGIGKTHAKWSPVATAWYRM 274
A KGIGK HAKW P A YR+
Sbjct: 170 ATKGIGKMHAKWIP-ANVSYRI 190
>gi|389583068|dbj|GAB65804.1| DNA-directed RNA polymerase II [Plasmodium cynomolgi strain B]
Length = 334
Score = 90.9 bits (224), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 67/197 (34%), Positives = 95/197 (48%), Gaps = 21/197 (10%)
Query: 78 VEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRL 137
VE+ +LTKD+M F L + +ANA RRI+++E+PT+AI+ V + NTS DE LAHRL
Sbjct: 15 VEITKLTKDEMTFVLHNSNTGMANALRRIMLSEIPTLAIDVVNVYENTSPFHDEFLAHRL 74
Query: 138 GLIPIIVDPRLFEYMSENDTSNEKNTIVFKLHVLCERGGPRLTVKTNELKWLPNGSELPL 197
GLIPI D+ N KN F+ C+ + T++ N S++ +
Sbjct: 75 GLIPI-------------DSRNVKN-FEFREKCKCKETCSKCTIQYLIQVKCNNVSKIDI 120
Query: 198 ETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPMLDITIARLGPGQEIELEAHAVKGI 257
+ +P E NN + I I L Q + ++ A KGI
Sbjct: 121 THYDIESVEHEPNVPMPVPF------EDRNNKMAESNAIPIVTLSKNQTLHMKLIATKGI 174
Query: 258 GKTHAKWSPVATAWYRM 274
GK HAKW P A YR+
Sbjct: 175 GKMHAKWIP-ANVSYRI 190
>gi|83286741|ref|XP_730293.1| conjugation stage-specific protein [Plasmodium yoelii yoelii 17XNL]
gi|23489977|gb|EAA21858.1| conjugation stage-specific protein, putative [Plasmodium yoelii
yoelii]
Length = 335
Score = 90.9 bits (224), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 63/200 (31%), Positives = 101/200 (50%), Gaps = 31/200 (15%)
Query: 78 VEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRL 137
+E+ ++K++MEF L ++A+ANA RRI+++E+PT+AI+ V + NTS DE +AHR+
Sbjct: 15 IEIKSISKNEMEFTLYNSNSALANALRRIMLSEVPTLAIDIVNVYENTSPFHDEFIAHRI 74
Query: 138 GLIPIIVDPR-----LFEYMSENDTSNEKNTIVFKLHVLCERGGPRLTVKTNELKWLPNG 192
GLIPI D R F + + + T+ + + V C ++ V +++ L +
Sbjct: 75 GLIPI--DSRNIKNYEFRERCKCKETCSRCTVQYIIEVKCNNAN-KIDVSHYDIEALDHE 131
Query: 193 SELPLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPMLD-ITIARLGPGQEIELEA 251
+P+ P+ N NN I M + I I L Q I ++
Sbjct: 132 PNIPMPI-PNDN---------------------KNNNIEKMENAIPILTLSKNQTIHMKL 169
Query: 252 HAVKGIGKTHAKWSPVATAW 271
A KGIGK HAKW P ++
Sbjct: 170 TATKGIGKMHAKWIPANVSY 189
>gi|320586301|gb|EFW98980.1| RNA polymerase 2 subunit 3 [Grosmannia clavigera kw1407]
Length = 362
Score = 90.9 bits (224), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 71/230 (30%), Positives = 113/230 (49%), Gaps = 55/230 (23%)
Query: 80 VIRLTKDDME---FDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHR 136
+++++ D+E F+L +D AIAN+ RR++IAE+PT+AI+ V + +NTSV+ DE +AHR
Sbjct: 17 AVKISQADVERVKFELTNVDLAIANSLRRVIIAEVPTIAIDIVEVEDNTSVLADEFIAHR 76
Query: 137 LGLIPIIVDPRLFEYMSENDTSNEKNTIVFKLHVLCERGGPRLTVKTNELKWLPNGSELP 196
LGL+P+ S + +V+ CE+ ++K L
Sbjct: 77 LGLVPL--------------NSKNADDVVYSRDCDCEQYCELCSIK------------LR 110
Query: 197 LETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRP-------------MLDITIARLGP 243
L+ K S+ K ++DL+ + P RP L + IA+L
Sbjct: 111 LQAKCTSDEVMK-------VYARDLVVD----PARPNQWVGTPVIRDPDGLGVMIAKLRR 159
Query: 244 GQEIELEAHAVKGIGKTHAKWSPVATAWYRMLPEIVL--LEDVEDEDAEK 291
GQE+ + A KGI K HAKWSP A + P L ++ ++DA+K
Sbjct: 160 GQELNMTCIAKKGIAKEHAKWSPTAAVGFEYDPHNKLHHMDMWYEQDADK 209
>gi|398364469|ref|NP_012243.3| Rpb3p [Saccharomyces cerevisiae S288c]
gi|730603|sp|P16370.2|RPB3_YEAST RecName: Full=DNA-directed RNA polymerase II subunit RPB3;
Short=RNA polymerase II subunit 3; Short=RNA polymerase
II subunit B3; AltName: Full=B44.5; AltName:
Full=DNA-directed RNA polymerase II 45 kDa polypeptide
gi|14278326|pdb|1I3Q|C Chain C, Rna Polymerase Ii Crystal Form I At 3.1 A Resolution
gi|14278337|pdb|1I50|C Chain C, Rna Polymerase Ii Crystal Form Ii At 2.8 A Resolution
gi|14278367|pdb|1I6H|C Chain C, Rna Polymerase Ii Elongation Complex
gi|20150715|pdb|1K83|C Chain C, Crystal Structure Of Yeast Rna Polymerase Ii Complexed
With The Inhibitor Alpha Amanitin
gi|30749618|pdb|1NIK|C Chain C, Wild Type Rna Polymerase Ii
gi|30749739|pdb|1NT9|C Chain C, Complete 12-Subunit Rna Polymerase Ii
gi|34810555|pdb|1PQV|C Chain C, Rna Polymerase Ii-Tfiis Complex
gi|46015417|pdb|1R5U|C Chain C, Rna Polymerase Ii Tfiib Complex
gi|46015782|pdb|1SFO|C Chain C, Rna Polymerase Ii Strand Separated Elongation Complex
gi|56965913|pdb|1R9S|C Chain C, Rna Polymerase Ii Strand Separated Elongation Complex,
Matched Nucleotide
gi|56965925|pdb|1R9T|C Chain C, Rna Polymerase Ii Strand Separated Elongation Complex,
Mismatched Nucleotide
gi|56966109|pdb|1TWA|C Chain C, Rna Polymerase Ii Complexed With Atp
gi|56966123|pdb|1TWC|C Chain C, Rna Polymerase Ii Complexed With Gtp
gi|56966133|pdb|1TWF|C Chain C, Rna Polymerase Ii Complexed With Utp At 2.3 A Resolution
gi|56966143|pdb|1TWG|C Chain C, Rna Polymerase Ii Complexed With Ctp
gi|56966153|pdb|1TWH|C Chain C, Rna Polymerase Ii Complexed With 2'datp
gi|58177166|pdb|1WCM|C Chain C, Complete 12-Subunit Rna Polymerase Ii At 3.8 Ang
gi|61679446|pdb|1Y1W|C Chain C, Complete Rna Polymerase Ii Elongation Complex
gi|61679463|pdb|1Y77|C Chain C, Complete Rna Polymerase Ii Elongation Complex With
Substrate Analogue Gmpcpp
gi|61679504|pdb|1Y1V|C Chain C, Refined Rna Polymerase Ii-tfiis Complex
gi|61679517|pdb|1Y1Y|C Chain C, Rna Polymerase Ii-Tfiis-DnaRNA COMPLEX
gi|83754245|pdb|2B63|C Chain C, Complete Rna Polymerase Ii-Rna Inhibitor Complex
gi|110590856|pdb|2B8K|C Chain C, 12-Subunit Rna Polymerase Ii
gi|122920063|pdb|2E2H|C Chain C, Rna Polymerase Ii Elongation Complex At 5 Mm Mg2+ With Gtp
gi|122920078|pdb|2E2I|C Chain C, Rna Polymerase Ii Elongation Complex In 5 Mm Mg+2 With 2'-
Dgtp
gi|122920093|pdb|2E2J|C Chain C, Rna Polymerase Ii Elongation Complex In 5 Mm Mg+2 With
Gmpcpp
gi|122921032|pdb|2NVQ|C Chain C, Rna Polymerase Ii Elongation Complex In 150 Mm Mg+2 With
2'dutp
gi|122921068|pdb|2NVT|C Chain C, Rna Polymerase Ii Elongation Complex In 150 Mm Mg+2 With
Gmpcpp
gi|122921084|pdb|2NVX|C Chain C, Rna Polymerase Ii Elongation Complex In 5 Mm Mg+2 With 2'-
Dutp
gi|122921099|pdb|2NVY|C Chain C, Rna Polymerase Ii Form Ii In 150 Mm Mn+2
gi|122921111|pdb|2NVZ|C Chain C, Rna Polymerase Ii Elongation Complex With Utp, Updated
112006
gi|134104676|pdb|2JA5|C Chain C, Cpd Lesion Containing Rna Polymerase Ii Elongation Complex
A
gi|134104691|pdb|2JA6|C Chain C, Cpd Lesion Containing Rna Polymerase Ii Elongation Complex
B
gi|134104712|pdb|2JA7|C Chain C, Cpd Lesion Containing Rna Polymerase Ii Elongation Complex
C
gi|134104724|pdb|2JA7|O Chain O, Cpd Lesion Containing Rna Polymerase Ii Elongation Complex
C
gi|134104736|pdb|2JA8|C Chain C, Cpd Lesion Containing Rna Polymerase Ii Elongation Complex
D
gi|146387186|pdb|2YU9|C Chain C, Rna Polymerase Ii Elongation Complex In 150 Mm Mg+2 With
Utp
gi|160877775|pdb|2R7Z|C Chain C, Cisplatin Lesion Containing Rna Polymerase Ii Elongation
Complex
gi|161172229|pdb|2R92|C Chain C, Elongation Complex Of Rna Polymerase Ii With Artificial
Rdrp Scaffold
gi|161172242|pdb|2R93|C Chain C, Elongation Complex Of Rna Polymerase Ii With A Hepatitis
Delta Virus-Derived Rna Stem Loop
gi|190613464|pdb|2VUM|C Chain C, Alpha-Amanitin Inhibited Complete Rna Polymerase Ii
Elongation Complex
gi|194368736|pdb|3CQZ|C Chain C, Crystal Structure Of 10 Subunit Rna Polymerase Ii In
Complex With The Inhibitor Alpha-Amanitin
gi|224983592|pdb|3FKI|C Chain C, 12-Subunit Rna Polymerase Ii Refined With Zn-Sad Data
gi|239781918|pdb|3GTG|C Chain C, Backtracked Rna Polymerase Ii Complex With 12mer Rna
gi|239781931|pdb|3GTJ|C Chain C, Backtracked Rna Polymerase Ii Complex With 13mer Rna
gi|239781944|pdb|3GTK|C Chain C, Backtracked Rna Polymerase Ii Complex With 18mer Rna
gi|239781957|pdb|3GTL|C Chain C, Backtracked Rna Polymerase Ii Complex With 13mer With G<>u
Mismatch
gi|239781970|pdb|3GTM|C Chain C, Co-Complex Of Backtracked Rna Polymerase Ii With Tfiis
gi|239781984|pdb|3GTO|C Chain C, Backtracked Rna Polymerase Ii Complex With 15mer Rna
gi|239781997|pdb|3GTP|C Chain C, Backtracked Rna Polymerase Ii Complex With 24mer Rna
gi|239782010|pdb|3GTQ|C Chain C, Backtracked Rna Polymerase Ii Complex Induced By Damage
gi|240104513|pdb|3H3V|D Chain D, Yeast Rnap Ii Containing Poly(A)-Signal Sequence In The
Active Site
gi|254839443|pdb|3HOU|C Chain C, Complete Rna Polymerase Ii Elongation Complex I With A T-U
Mismatch
gi|254839458|pdb|3HOU|O Chain O, Complete Rna Polymerase Ii Elongation Complex I With A T-U
Mismatch
gi|254839473|pdb|3HOV|C Chain C, Complete Rna Polymerase Ii Elongation Complex Ii
gi|266618767|pdb|3K1F|C Chain C, Crystal Structure Of Rna Polymerase Ii In Complex With
Tfiib
gi|269914554|pdb|3K7A|C Chain C, Crystal Structure Of An Rna Polymerase Ii-Tfiib Complex
gi|295982477|pdb|3M3Y|C Chain C, Rna Polymerase Ii Elongation Complex C
gi|295982490|pdb|3M4O|C Chain C, Rna Polymerase Ii Elongation Complex B
gi|325053965|pdb|3PO2|C Chain C, Arrested Rna Polymerase Ii Elongation Complex
gi|325053980|pdb|3PO3|C Chain C, Arrested Rna Polymerase Ii Reactivation Intermediate
gi|326634540|pdb|3QT1|C Chain C, Rna Polymerase Ii Variant Containing A Chimeric Rpb9-C11
Subunit
gi|343197458|pdb|3RZD|C Chain C, Rna Polymerase Ii Initiation Complex With A 5-Nt Rna
gi|343197470|pdb|3RZO|C Chain C, Rna Polymerase Ii Initiation Complex With A 4-Nt Rna
gi|343197482|pdb|3S14|C Chain C, Rna Polymerase Ii Initiation Complex With A 6-Nt Rna
gi|343197494|pdb|3S15|C Chain C, Rna Polymerase Ii Initiation Complex With A 7-Nt Rna
gi|343197506|pdb|3S16|C Chain C, Rna Polymerase Ii Initiation Complex With An 8-Nt Rna
gi|343197518|pdb|3S17|C Chain C, Rna Polymerase Ii Initiation Complex With A 9-Nt Rna
gi|343197530|pdb|3S1M|C Chain C, Rna Polymerase Ii Initiation Complex With A 5-Nt Rna
(Variant 1)
gi|343197542|pdb|3S1N|C Chain C, Rna Polymerase Ii Initiation Complex With A 5-Nt Rna
(Variant 2)
gi|343197554|pdb|3S1Q|C Chain C, Rna Polymerase Ii Initiation Complex With A 5-Nt 3'-Deoxy
Rna Soaked With Atp
gi|343197566|pdb|3S1R|C Chain C, Rna Polymerase Ii Initiation Complex With A 5-Nt 3'-Deoxy
Rna Soaked With Gtp
gi|343197578|pdb|3S2D|C Chain C, Rna Polymerase Ii Initiation Complex With A 5-Nt Rna
Containing A 5br- U
gi|343781199|pdb|3S2H|C Chain C, Rna Polymerase Ii Initiation Complex With A 6-Nt Rna
Containing A 2[prime]-Iodo Atp
gi|357380838|pdb|4A3C|C Chain C, Rna Polymerase Ii Initial Transcribing Complex With A 5nt
Dna-Rna Hybrid
gi|359546292|pdb|4A3B|C Chain C, Rna Polymerase Ii Initial Transcribing Complex With A 4nt
Dna-Rna Hybrid
gi|359546310|pdb|4A3D|C Chain C, Rna Polymerase Ii Initial Transcribing Complex With A 6nt
Dna-Rna Hybrid
gi|359546327|pdb|4A3E|C Chain C, Rna Polymerase Ii Initial Transcribing Complex With A 5nt
Dna-Rna Hybrid And Soaked With Ampcpp
gi|359546344|pdb|4A3F|C Chain C, Rna Polymerase Ii Initial Transcribing Complex With A 6nt
Dna-Rna Hybrid And Soaked With Ampcpp
gi|359546361|pdb|4A3J|C Chain C, Rna Polymerase Ii Initial Transcribing Complex With A 2nt
Dna-Rna Hybrid And Soaked With Gmpcpp
gi|359546378|pdb|4A3K|C Chain C, Rna Polymerase Ii Initial Transcribing Complex With A 7nt
Dna-Rna Hybrid
gi|359546394|pdb|4A3L|C Chain C, Rna Polymerase Ii Initial Transcribing Complex With A 7nt
Dna-Rna Hybrid And Soaked With Ampcpp
gi|359546411|pdb|4A3M|C Chain C, Rna Polymerase Ii Initial Transcribing Complex With A 4nt
Dna-Rna Hybrid And Soaked With Ampcpp
gi|374977881|pdb|4A3G|C Chain C, Rna Polymerase Ii Initial Transcribing Complex With A 2nt
Dna-Rna Hybrid
gi|374977896|pdb|4A3I|C Chain C, Rna Polymerase Ii Binary Complex With Dna
gi|380764981|pdb|4A93|C Chain C, Rna Polymerase Ii Elongation Complex Containing A Cpd
Lesion
gi|414145448|pdb|4BBR|C Chain C, Structure Of Rna Polymerase Ii-tfiib Complex
gi|414145461|pdb|4BBS|C Chain C, Structure Of An Initially Transcribing Rna Polymerase Ii-
Tfiib Complex
gi|599978|emb|CAA86971.1| RNA polymerase II [Saccharomyces cerevisiae]
gi|151943136|gb|EDN61471.1| RNA polymerase B [Saccharomyces cerevisiae YJM789]
gi|190406243|gb|EDV09510.1| RNA polymerase II 45 kDa subunit [Saccharomyces cerevisiae RM11-1a]
gi|207344276|gb|EDZ71474.1| YIL021Wp-like protein [Saccharomyces cerevisiae AWRI1631]
gi|256272154|gb|EEU07153.1| Rpb3p [Saccharomyces cerevisiae JAY291]
gi|259147237|emb|CAY80490.1| Rpb3p [Saccharomyces cerevisiae EC1118]
gi|285812625|tpg|DAA08524.1| TPA: Rpb3p [Saccharomyces cerevisiae S288c]
gi|323333059|gb|EGA74460.1| Rpb3p [Saccharomyces cerevisiae AWRI796]
gi|323354620|gb|EGA86456.1| Rpb3p [Saccharomyces cerevisiae VL3]
gi|349578928|dbj|GAA24092.1| K7_Rpb3p [Saccharomyces cerevisiae Kyokai no. 7]
gi|365765154|gb|EHN06668.1| Rpb3p [Saccharomyces cerevisiae x Saccharomyces kudriavzevii VIN7]
gi|392298697|gb|EIW09793.1| Rpb3p [Saccharomyces cerevisiae CEN.PK113-7D]
Length = 318
Score = 90.5 bits (223), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 64/206 (31%), Positives = 102/206 (49%), Gaps = 36/206 (17%)
Query: 77 RVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHR 136
+V++ +KD+++F L +D A+AN+ RR++IAE+PT+AI+ V + NT+V+ DE +AHR
Sbjct: 7 QVKIREASKDNVDFILSNVDLAMANSLRRVMIAEIPTLAIDSVEVETNTTVLADEFIAHR 66
Query: 137 LGLIPI-IVDPRLFEYMSE--NDTSNEKNTIVFKLHVLCERGGPRLTVKTNELKWLPNGS 193
LGLIP+ +D EY + + +K ++V L
Sbjct: 67 LGLIPLQSMDIEQLEYSRDCFCEDHCDKCSVVLTLQAFG--------------------- 105
Query: 194 ELPLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPI---RPMLDITIARLGPGQEIELE 250
E++ +N SK S +L+ +PI + + I +L GQE++L
Sbjct: 106 ----ESESTTNVYSKDLVIVS-----NLMGRNIGHPIIQDKEGNGVLICKLRKGQELKLT 156
Query: 251 AHAVKGIGKTHAKWSPVATAWYRMLP 276
A KGI K HAKW P A + P
Sbjct: 157 CVAKKGIAKEHAKWGPAAAIEFEYDP 182
>gi|257471948|pdb|3I4M|C Chain C, 8-oxoguanine Containing Rna Polymerase Ii Elongation
Complex D
gi|257471963|pdb|3I4N|C Chain C, 8-oxoguanine Containing Rna Polymerase Ii Elongation
Complex E
Length = 324
Score = 90.5 bits (223), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 64/206 (31%), Positives = 102/206 (49%), Gaps = 36/206 (17%)
Query: 77 RVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHR 136
+V++ +KD+++F L +D A+AN+ RR++IAE+PT+AI+ V + NT+V+ DE +AHR
Sbjct: 13 QVKIREASKDNVDFILSNVDLAMANSLRRVMIAEIPTLAIDSVEVETNTTVLADEFIAHR 72
Query: 137 LGLIPI-IVDPRLFEYMSE--NDTSNEKNTIVFKLHVLCERGGPRLTVKTNELKWLPNGS 193
LGLIP+ +D EY + + +K ++V L
Sbjct: 73 LGLIPLQSMDIEQLEYSRDCFCEDHCDKCSVVLTLQAFG--------------------- 111
Query: 194 ELPLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPI---RPMLDITIARLGPGQEIELE 250
E++ +N SK S +L+ +PI + + I +L GQE++L
Sbjct: 112 ----ESESTTNVYSKDLVIVS-----NLMGRNIGHPIIQDKEGNGVLICKLRKGQELKLT 162
Query: 251 AHAVKGIGKTHAKWSPVATAWYRMLP 276
A KGI K HAKW P A + P
Sbjct: 163 CVAKKGIAKEHAKWGPAAAIEFEYDP 188
>gi|406859740|gb|EKD12803.1| RNA polymerase II subunit 3 [Marssonina brunnea f. sp.
'multigermtubi' MB_m1]
Length = 334
Score = 90.5 bits (223), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 63/216 (29%), Positives = 102/216 (47%), Gaps = 36/216 (16%)
Query: 67 LQLDHFCNNFRVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTS 126
+Q+D + V++ + ++F+L +D A AN+ RR+++AE+PTMAI+ V I NTS
Sbjct: 6 MQMDTEASGPSVKITEAGANHVDFELENVDLAFANSLRRVIMAEVPTMAIDTVEIEANTS 65
Query: 127 VIQDEVLAHRLGLIPII---VDPRLFEYMSENDTSNEKNTIVFKLHVLCERGGPRLTVKT 183
V+ DE LAHRLGL+P++ ++ + E ++ E ++V L C + V
Sbjct: 66 VLADEFLAHRLGLVPLVSKNIEDVNYTRDCECESYCELCSVVLSLQARC-TSEEIMKVYA 124
Query: 184 NELKWLPNGSELPLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPI---RPMLDITIAR 240
+L PN + ++ NP+ L I +
Sbjct: 125 RDLVVDPNRAN-----------------------------QYVGNPVITDEDGLGTVICK 155
Query: 241 LGPGQEIELEAHAVKGIGKTHAKWSPVATAWYRMLP 276
L GQE+ + A KGI K HAKW+PV+ + P
Sbjct: 156 LRQGQELRMRCIAKKGIAKEHAKWAPVSAVAFEYDP 191
>gi|91772121|ref|YP_564813.1| DNA-directed RNA polymerase subunit D [Methanococcoides burtonii
DSM 6242]
gi|91711136|gb|ABE51063.1| DNA-directed RNA polymerase subunit D [Methanococcoides burtonii
DSM 6242]
Length = 267
Score = 90.5 bits (223), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 74/253 (29%), Positives = 112/253 (44%), Gaps = 42/253 (16%)
Query: 76 FRVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAH 135
++++ L+ +F L AA AN RR ++A++PT+AI+ V I NNTSV+ DE LA
Sbjct: 1 MEIDILELSDRSAKFILSNTTAAFANGVRRAMLADVPTLAIDDVNIYNNTSVLYDEQLAL 60
Query: 136 RLGLIPIIVDPRLFEYMSENDTSNEKNTIVFKLHVLCERGG-PRLTVKTNELKWLPNGSE 194
RLGLIP+ + + V + C+ G P TV
Sbjct: 61 RLGLIPL---------------TTSFDDFVPQDKCTCDGAGCPACTVS------------ 93
Query: 195 LPLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPMLDITIARLGPGQEIELEAHAV 254
L L + D + + + SS ++ P N PI +D+ + GQ++ LEA A
Sbjct: 94 LTLSVETDESGQTIVHSGDIVSSDPNVQPADKNIPI---IDLRV-----GQKVVLEAIAH 145
Query: 255 KGIGKTHAKWSPVATAWYRMLPEIVLLEDVEDEDAEKLVKTCPVNVFDIEDIGSGKKRAT 314
G G HAKW Y+++P IV E + + +CP N+ + D G
Sbjct: 146 MGYGNKHAKWQAGVACGYKIMP-IVTFEGC--DGCGICINSCPRNIIQLID---GSAMVA 199
Query: 315 VAQPRACTLCREC 327
C+LCR C
Sbjct: 200 DEDLLKCSLCRLC 212
>gi|254839488|pdb|3HOW|C Chain C, Complete Rna Polymerase Ii Elongation Complex Iii With A
T-U Mismatch And A Frayed Rna 3'-Uridine
gi|254839503|pdb|3HOX|C Chain C, Complete Rna Polymerase Ii Elongation Complex V
gi|254839518|pdb|3HOY|C Chain C, Complete Rna Polymerase Ii Elongation Complex Vi
gi|254839533|pdb|3HOZ|C Chain C, Complete Rna Polymerase Ii Elongation Complex Iv With A
T-U Mismatch And A Frayed Rna 3'-Guanine
Length = 347
Score = 90.5 bits (223), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 64/206 (31%), Positives = 102/206 (49%), Gaps = 36/206 (17%)
Query: 77 RVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHR 136
+V++ +KD+++F L +D A+AN+ RR++IAE+PT+AI+ V + NT+V+ DE +AHR
Sbjct: 36 QVKIREASKDNVDFILSNVDLAMANSLRRVMIAEIPTLAIDSVEVETNTTVLADEFIAHR 95
Query: 137 LGLIPI-IVDPRLFEYMSE--NDTSNEKNTIVFKLHVLCERGGPRLTVKTNELKWLPNGS 193
LGLIP+ +D EY + + +K ++V L
Sbjct: 96 LGLIPLQSMDIEQLEYSRDCFCEDHCDKCSVVLTLQAFG--------------------- 134
Query: 194 ELPLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPI---RPMLDITIARLGPGQEIELE 250
E++ +N SK S +L+ +PI + + I +L GQE++L
Sbjct: 135 ----ESESTTNVYSKDLVIVS-----NLMGRNIGHPIIQDKEGNGVLICKLRKGQELKLT 185
Query: 251 AHAVKGIGKTHAKWSPVATAWYRMLP 276
A KGI K HAKW P A + P
Sbjct: 186 CVAKKGIAKEHAKWGPAAAIEFEYDP 211
>gi|390602421|gb|EIN11814.1| hypothetical protein PUNSTDRAFT_61925 [Punctularia strigosozonata
HHB-11173 SS5]
Length = 301
Score = 90.5 bits (223), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 65/211 (30%), Positives = 101/211 (47%), Gaps = 32/211 (15%)
Query: 78 VEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRL 137
V + L KD + F L +D A AN+ RR+++A++PT+AI+ V I NT+V+ DE LAHRL
Sbjct: 11 VRIRDLKKDRVNFVLENVDLAFANSLRRVMMADIPTVAIDLVEIETNTTVLSDEFLAHRL 70
Query: 138 GLIPIIV----DPRLFEYMSENDTSNEKNTIVFKLHVLCERGGPRLTVKTNELKWLPN-- 191
G++P++ + + +S +IV +LHV C L V ++ L +P
Sbjct: 71 GMVPLVSTNCDEAIRYSRDCSCMSSCSYCSIVLQLHVSCTEDDTTLNVTSDHLDVVPASD 130
Query: 192 ------GSELPLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPMLDITIARLGPGQ 245
G EL + +P K + P+L + +L GQ
Sbjct: 131 DDQGDPGEELTKRVENFGSPVGK-----------------GVEGVDPVL---LCKLRKGQ 170
Query: 246 EIELEAHAVKGIGKTHAKWSPVATAWYRMLP 276
E+++ A KGI K HAK+SP A + P
Sbjct: 171 ELKVRCIAKKGISKEHAKFSPCAAVSFEYDP 201
>gi|402224256|gb|EJU04319.1| RBP11-like subunit of RNA polymerase [Dacryopinax sp. DJM-731 SS1]
Length = 401
Score = 90.5 bits (223), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 76/259 (29%), Positives = 116/259 (44%), Gaps = 52/259 (20%)
Query: 78 VEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRL 137
+ + L KD +EF + G+D + AN+FRR+++A++ T+AI+ V I NT+V+ DE L+HR+
Sbjct: 6 IRIRELAKDRVEFVMTGVDLSFANSFRRVIMADVATVAIDMVEIEVNTTVLVDEFLSHRI 65
Query: 138 GLIPIIVDPRLFEYMSENDTSNEKN----------TIVFKLHVLCERGGPRLTVKTNELK 187
G+IP L E +++ IV+ + V C G + V ++ L
Sbjct: 66 GMIP------LTSTNCEEGMRYKRDCPCLGICRYCAIVYDIDVRCTEG--EMNVTSDHLT 117
Query: 188 WLPNGSELPLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNN---PIRPMLD-------IT 237
+P P S+++D+L + N P P D I+
Sbjct: 118 MVP--------------PDQWDHEEQDSSAAEDILSKRGKNFGVPAGPATDPDPNRRPIS 163
Query: 238 IARLGPGQEIELEAHAVKGIGKTHAKWSPVATAWYRMLPEIVLLEDVE----DEDAE-KL 292
+ R+ GQ ++ A KGI K HAKWSP A + P L DE AE L
Sbjct: 164 LVRMRKGQALKARCVARKGIAKEHAKWSPCAAVGFEYDPHNKLRHTAYWYEVDEKAEWPL 223
Query: 293 VKTC-----PVNVFDIEDI 306
K P +VFD I
Sbjct: 224 SKNADEEAPPGDVFDFTSI 242
>gi|172213|gb|AAA34889.1| RNA polymerase II (EC 2.7.7.6) [Saccharomyces cerevisiae]
Length = 318
Score = 90.5 bits (223), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 64/206 (31%), Positives = 102/206 (49%), Gaps = 36/206 (17%)
Query: 77 RVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHR 136
+V++ +KD+++F L +D A+AN+ RR++IAE+PT+AI+ V + NT+V+ DE +AHR
Sbjct: 7 QVKIREASKDNVDFILSNVDLAMANSLRRVMIAEIPTLAIDSVEVETNTTVLADEFIAHR 66
Query: 137 LGLIPI-IVDPRLFEYMSE--NDTSNEKNTIVFKLHVLCERGGPRLTVKTNELKWLPNGS 193
LGLIP+ +D EY + + +K ++V L
Sbjct: 67 LGLIPLQSMDIEQLEYSRDCFCEDHCDKCSVVLTLQAFG--------------------- 105
Query: 194 ELPLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPI---RPMLDITIARLGPGQEIELE 250
E++ +N SK S +L+ +PI + + I +L GQE++L
Sbjct: 106 ----ESESTTNVYSKDLVIVS-----NLMGRNIGHPIIQDKEGNGVLICKLRKGQELKLT 156
Query: 251 AHAVKGIGKTHAKWSPVATAWYRMLP 276
A KGI K HAKW P A + P
Sbjct: 157 CVAKKGIAKEHAKWGPAAGIEFEYDP 182
>gi|378754855|gb|EHY64883.1| DNA-directed RNA polymerase I and III subunit RPAC1 [Nematocida sp.
1 ERTm2]
Length = 271
Score = 90.5 bits (223), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 60/217 (27%), Positives = 106/217 (48%), Gaps = 45/217 (20%)
Query: 69 LDHFCNNFRVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVI 128
+D + V + D + F + I+A++ NA RR +I++ P++A+ V I N +V+
Sbjct: 1 MDEYLARIEVRKVADGPDTLSFRVNQIEASVLNALRRTIISDTPSIAVHWVYIRENETVM 60
Query: 129 QDEVLAHRLGLIPIIVDPRLFEYMSENDTSN------EKNTIVFKLHVLCERGGPR-LTV 181
DE+L+HRLGLIPI+ D + + ++ + ++N+I +L+V E + LTV
Sbjct: 61 ADEILSHRLGLIPILADSSTLKNIVRSEVLDPLAELTDENSIKMELNV--ENTTDKVLTV 118
Query: 182 KTNELKWLPNGSELPLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPMLDITIARL 241
++N++K + N T T+ ++ I RL
Sbjct: 119 RSNDIKIVSN-------------------TKTTLKQ-----------------NVIITRL 142
Query: 242 GPGQEIELEAHAVKGIGKTHAKWSPVATAWYRMLPEI 278
PG+ IE + AV G G+ HAKW P + +YR + ++
Sbjct: 143 APGKRIECKMLAVVGTGREHAKWMPTSVCYYRSIKKL 179
>gi|116205067|ref|XP_001228344.1| hypothetical protein CHGG_10417 [Chaetomium globosum CBS 148.51]
gi|88176545|gb|EAQ84013.1| hypothetical protein CHGG_10417 [Chaetomium globosum CBS 148.51]
Length = 338
Score = 90.1 bits (222), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 67/203 (33%), Positives = 100/203 (49%), Gaps = 33/203 (16%)
Query: 80 VIRLTKDD---MEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHR 136
V+++++ D ++F+L D A AN+ RR+++ E+PT+AI+ V I N+SV+ DE +AHR
Sbjct: 17 VVKISQADPIRVKFELSNADIAFANSLRRVMLGEIPTIAIDLVEIEENSSVLADEFIAHR 76
Query: 137 LGLIPIIVD---PRLFEYMSENDTSNEKNTIVFKLHVLCERGGPRLTVKTNELKWLPNGS 193
LGLIP+ D LF + D E ++ LH C G + V +L +P G
Sbjct: 77 LGLIPLNADGVEGLLFARDCDCDGCCEHCSVRLTLHAKC-TGDENMHVFARDL--VPTGE 133
Query: 194 ELPLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPMLDITIARLGPGQEIELEAHA 253
+ ++ S S+ L I +L PGQEI+LE A
Sbjct: 134 RI-----------NQVLGTPVVSDSEG-------------LGALILKLRPGQEIKLECIA 169
Query: 254 VKGIGKTHAKWSPVATAWYRMLP 276
KGI K HAKW+P A + P
Sbjct: 170 KKGIAKEHAKWAPSAAIGFEYDP 192
>gi|50290755|ref|XP_447810.1| hypothetical protein [Candida glabrata CBS 138]
gi|49527121|emb|CAG60759.1| unnamed protein product [Candida glabrata]
Length = 312
Score = 90.1 bits (222), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 62/203 (30%), Positives = 99/203 (48%), Gaps = 30/203 (14%)
Query: 77 RVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHR 136
+V++ T+D+++F L +D A+AN+ RR++IAE+PT+AI+ V + NT+V+ DE LAHR
Sbjct: 7 QVKIREATRDNVDFILSNVDLALANSLRRVMIAEIPTLAIDSVEVETNTTVLADEFLAHR 66
Query: 137 LGLIPIIVDPRLFEYMSENDTSNEKNTIVFKLHVLCERGGPRLTVKTNELKWLPNGSELP 196
LGLIP+ S + + + CE + +V L
Sbjct: 67 LGLIPL--------------QSTDIEQLEYSRDCFCEDHCDKCSVV------------LT 100
Query: 197 LETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPI---RPMLDITIARLGPGQEIELEAHA 253
L+ +S ++ S +L+ +PI + + I +L GQE++L A
Sbjct: 101 LQAVGESESTTNVYAKDLLIVS-NLMGRNIGHPIIQDKEGNGVLICKLRKGQELKLTCIA 159
Query: 254 VKGIGKTHAKWSPVATAWYRMLP 276
KGI K HAKW P A + P
Sbjct: 160 KKGIAKEHAKWGPAAAIEFEYDP 182
>gi|326927174|ref|XP_003209769.1| PREDICTED: ubiquinone biosynthesis protein COQ9, mitochondrial-like
[Meleagris gallopavo]
Length = 549
Score = 90.1 bits (222), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 65/189 (34%), Positives = 89/189 (47%), Gaps = 27/189 (14%)
Query: 100 ANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRLGLIPI----IVDPRLFEYMSEN 155
AN+ RR+ IAE+P +AI+ V I N+SV+ DE +AHRLGLIP+ IVD +
Sbjct: 305 ANSIRRVFIAEVPIIAIDWVQIDANSSVLHDEFIAHRLGLIPLTSDDIVDKMQYSRDCTC 364
Query: 156 DTSNEKNTIVFKLHVLCERGGPRLTVKTNELKWLPNGSELPLETKPDSNPSSKPRTYTSF 215
D + ++ F L V C R + + S+ PR
Sbjct: 365 DEFCPECSVEFTLDVRCNEDQTRHVTSRDLI-------------------SNNPRVIPVT 405
Query: 216 SSSQDLLPEFSNNPIRPMLDITIARLGPGQEIELEAHAVKGIGKTHAKWSPVATAWYRML 275
S S+D P N DI I +L GQE++L A+A KG GK HAKW+P A +
Sbjct: 406 SRSRDNDP----NDYVEQDDILIVKLRKGQELKLRAYAKKGFGKEHAKWNPTAGVAFEYD 461
Query: 276 PEIVLLEDV 284
P+ L V
Sbjct: 462 PDNALRHTV 470
>gi|260799989|ref|XP_002594919.1| hypothetical protein BRAFLDRAFT_277672 [Branchiostoma floridae]
gi|229280157|gb|EEN50930.1| hypothetical protein BRAFLDRAFT_277672 [Branchiostoma floridae]
Length = 275
Score = 90.1 bits (222), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 68/213 (31%), Positives = 101/213 (47%), Gaps = 27/213 (12%)
Query: 72 FCNNFRVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDE 131
+ N +V + L+ ++++F + D ++ANA RRI IAE+PT+AI+ V + N+SV+ DE
Sbjct: 3 YANQPQVHLTELSDENVKFVIEDTDLSMANAVRRIFIAEVPTLAIDWVQLEANSSVLHDE 62
Query: 132 VLAHRLGLIPIIVDPRLFEYMSENDTSNEKN----TIVFKLHVLCERGGPRLTVKTNELK 187
+AHR+GLIP+ D + D + + I L V C R V T +L
Sbjct: 63 FIAHRVGLIPLTSDDIVDRMQYSRDCTCAEFCADCAIELTLDVKCTDDQTR-HVTTRDLI 121
Query: 188 WLPNGSELPLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPMLDITIARLGPGQEI 247
SNP P T ++D + DI I +L GQE+
Sbjct: 122 --------------SSNPRVVPVTS---RRAEDETAGYGEAD-----DILIVKLRKGQEL 159
Query: 248 ELEAHAVKGIGKTHAKWSPVATAWYRMLPEIVL 280
+L A A KG K HAKW+P A + P+ L
Sbjct: 160 KLRAFAKKGFAKEHAKWNPTAGVAFEYDPDNAL 192
>gi|261403745|ref|YP_003247969.1| RNA polymerase insert [Methanocaldococcus vulcanius M7]
gi|261370738|gb|ACX73487.1| RNA polymerase insert [Methanocaldococcus vulcanius M7]
Length = 191
Score = 89.7 bits (221), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 72/200 (36%), Positives = 93/200 (46%), Gaps = 58/200 (29%)
Query: 98 AIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRLGLIPIIVDPRLFEYMSENDT 157
+ +NA RRI+I+E+PT AIE V I N+S + DE+LAHRLGLIPI P L DT
Sbjct: 25 SFSNAIRRIMISEVPTFAIEDVYIYENSSSMDDEILAHRLGLIPIKGKPLL-------DT 77
Query: 158 SNEKNTIVFKLHVLCERGGPRLTVKTNELKWLPNGSELPLETKPDSNPSSKPRTYTSFSS 217
I F L E+ GP TV +++LK
Sbjct: 78 ----EIITFTL----EKEGP-CTVYSSDLK------------------------------ 98
Query: 218 SQDLLPEFSNNPIRPMLDITIARLGPGQEIELEAHAVKGIGKTHAKWSPVATAWYRMLPE 277
S N +I I +LG GQ I++E AV GIGK HAKW P A Y+ L E
Sbjct: 99 --------SENGEVAFKNIPIVKLGKGQRIKIECEAVPGIGKVHAKWQP-CNAVYKQLSE 149
Query: 278 I---VLLEDVEDEDAEKLVK 294
+E DAE+++K
Sbjct: 150 DEVEFFVETFGQIDAEQILK 169
>gi|367017650|ref|XP_003683323.1| hypothetical protein TDEL_0H02530 [Torulaspora delbrueckii]
gi|359750987|emb|CCE94112.1| hypothetical protein TDEL_0H02530 [Torulaspora delbrueckii]
Length = 311
Score = 89.7 bits (221), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 64/206 (31%), Positives = 102/206 (49%), Gaps = 36/206 (17%)
Query: 77 RVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHR 136
+V++ TKD+++F L +D A+AN+ RRI++AE+PT+AI+ V I NT+V+ DE +AHR
Sbjct: 7 QVKIREATKDNVDFILSQVDLAMANSLRRIMMAEIPTLAIDSVEIETNTTVLADEFIAHR 66
Query: 137 LGLIPI-IVDPRLFEYMSE--NDTSNEKNTIVFKLHVLCERGGPRLTVKTNELKWLPNGS 193
LGLIP+ D EY + + +K ++V L +
Sbjct: 67 LGLIPLQSTDIEQLEYCRDCFCEDHCDKCSVVLTLQAIG--------------------- 105
Query: 194 ELPLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPI---RPMLDITIARLGPGQEIELE 250
E++ +N +K S +L+ +PI + + I +L GQE+ ++
Sbjct: 106 ----ESESTTNVYAKDLVIVS-----NLMGRNIGHPIIQDKEGNGVLICKLRKGQELSMK 156
Query: 251 AHAVKGIGKTHAKWSPVATAWYRMLP 276
A KGI K HAKW P A + P
Sbjct: 157 CVAKKGISKEHAKWGPAAAIEFEYDP 182
>gi|365760141|gb|EHN01882.1| Rpb3p [Saccharomyces cerevisiae x Saccharomyces kudriavzevii VIN7]
gi|401839643|gb|EJT42771.1| RPB3-like protein [Saccharomyces kudriavzevii IFO 1802]
Length = 318
Score = 89.7 bits (221), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 64/206 (31%), Positives = 101/206 (49%), Gaps = 36/206 (17%)
Query: 77 RVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHR 136
+V++ +KD ++F L +D A+AN+ RR++IAE+PT+AI+ V + NT+V+ DE +AHR
Sbjct: 7 QVKIREASKDGVDFILSNVDLAMANSLRRVMIAEIPTLAIDSVEVETNTTVLADEFIAHR 66
Query: 137 LGLIPI-IVDPRLFEYMSE--NDTSNEKNTIVFKLHVLCERGGPRLTVKTNELKWLPNGS 193
LGLIP+ +D EY + + +K ++V L
Sbjct: 67 LGLIPLQSMDIEQLEYSRDCFCEDHCDKCSVVLTLQAFG--------------------- 105
Query: 194 ELPLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPI---RPMLDITIARLGPGQEIELE 250
E++ +N SK S +L+ +PI + + I +L GQE++L
Sbjct: 106 ----ESESTTNVYSKDLVIVS-----NLMGRNIGHPIIQDKEGNGVLICKLRKGQELKLT 156
Query: 251 AHAVKGIGKTHAKWSPVATAWYRMLP 276
A KGI K HAKW P A + P
Sbjct: 157 CVAKKGIAKEHAKWGPAAAIEFEYDP 182
>gi|289191580|ref|YP_003457521.1| RNA polymerase insert [Methanocaldococcus sp. FS406-22]
gi|288938030|gb|ADC68785.1| RNA polymerase insert [Methanocaldococcus sp. FS406-22]
Length = 191
Score = 89.4 bits (220), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 65/180 (36%), Positives = 85/180 (47%), Gaps = 55/180 (30%)
Query: 98 AIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRLGLIPIIVDPRLFEYMSENDT 157
+ +NA RRI+I+E+PT AIE V I N+S + DE+LAHRLGLIPI P +
Sbjct: 25 SFSNAIRRIMISEVPTYAIEDVYIYENSSSMDDEILAHRLGLIPIKGKPLI--------- 75
Query: 158 SNEKNTIVFKLHVLCERGGPRLTVKTNELKWLPNGSELPLETKPDSNPSSKPRTYTSFSS 217
E I F L E+ GP TV +++LK
Sbjct: 76 --ESEVITFTL----EKEGP-CTVYSSDLK------------------------------ 98
Query: 218 SQDLLPEFSNNPIRPMLDITIARLGPGQEIELEAHAVKGIGKTHAKWSPVATAWYRMLPE 277
S N +I I +LG GQ+I++E AV GIGKTHAKW P A Y+ + E
Sbjct: 99 --------SENGEVAFKNIPIVKLGRGQKIKIECEAVPGIGKTHAKWQP-CNAVYKQVAE 149
>gi|401625294|gb|EJS43310.1| rpb3p [Saccharomyces arboricola H-6]
Length = 318
Score = 89.4 bits (220), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 63/206 (30%), Positives = 101/206 (49%), Gaps = 36/206 (17%)
Query: 77 RVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHR 136
+V++ +KD+++F L +D A+AN+ RR++IAE+PT+AI+ V + NT+V+ DE +AHR
Sbjct: 7 QVKIREASKDNVDFILSNVDLAMANSLRRVMIAEIPTLAIDSVEVETNTTVLADEFIAHR 66
Query: 137 LGLIPI-IVDPRLFEYMSE--NDTSNEKNTIVFKLHVLCERGGPRLTVKTNELKWLPNGS 193
LGLIP+ +D EY + + +K ++V L
Sbjct: 67 LGLIPLQSMDIEQLEYSRDCFCEDHCDKCSVVLTLQAFG--------------------- 105
Query: 194 ELPLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPI---RPMLDITIARLGPGQEIELE 250
E++ +N K S +L+ +PI + + I +L GQE++L
Sbjct: 106 ----ESESTTNVYGKDLVIVS-----NLMGRNIGHPIIQDKEGNGVLICKLRKGQELKLT 156
Query: 251 AHAVKGIGKTHAKWSPVATAWYRMLP 276
A KGI K HAKW P A + P
Sbjct: 157 CVAKKGIAKEHAKWGPAAAIEFEYDP 182
>gi|429966309|gb|ELA48306.1| hypothetical protein VCUG_00142 [Vavraia culicis 'floridensis']
Length = 304
Score = 89.4 bits (220), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 62/211 (29%), Positives = 101/211 (47%), Gaps = 12/211 (5%)
Query: 101 NAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRLGLIPIIVDPRLFEYMSENDTSNE 160
NA RR+++ E+P +AI KVL V+ +EVLAHRLGL+P+ D L +S ++
Sbjct: 31 NALRRVILEEVPAVAISKVLFHKYVGVLPEEVLAHRLGLVPVFCDALL---LSSSEEMVR 87
Query: 161 KNTIVFKLHVLCERGGPRLTVKTNELKWLPNGSELPLETKPDSNP--SSKPRTYTSFSSS 218
+ + ++ GG + E+ +G + ++ S + R+ + +
Sbjct: 88 SSCVRMRIRKEGSDGGVWVRSDDIEVVHFDSGRRISSWSRAMSEDRIGDEERSDEERNDA 147
Query: 219 QDLLPEFSNNPIRPML--DITIARLGPGQEIELEAHAVKGIGKTHAKWSPVATAWYRMLP 276
D N PM+ + I +LGP Q +++E +A KG K HAK+S V +YRM P
Sbjct: 148 ID-----GTNNSSPMIKQGVLITKLGPNQHLDVEMYATKGTAKEHAKYSTVNICYYRMHP 202
Query: 277 EIVLLEDVEDEDAEKLVKTCPVNVFDIEDIG 307
+ L +++DA L K V I G
Sbjct: 203 ILTLTRSFKNDDAHLLRKRFKNGVIGIRKNG 233
>gi|260950839|ref|XP_002619716.1| hypothetical protein CLUG_00875 [Clavispora lusitaniae ATCC 42720]
gi|238847288|gb|EEQ36752.1| hypothetical protein CLUG_00875 [Clavispora lusitaniae ATCC 42720]
Length = 307
Score = 89.0 bits (219), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 64/212 (30%), Positives = 100/212 (47%), Gaps = 30/212 (14%)
Query: 67 LQLDHFCNNFRVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTS 126
+++D + RV + + +D ++F L G+D ++AN+ RR +++E+PT+AI+ V I NTS
Sbjct: 1 MEVDSAESGPRVTIRQTERDHVDFILRGVDLSVANSLRRTMLSEVPTLAIDLVEIDVNTS 60
Query: 127 VIQDEVLAHRLGLIPIIVDPRLFEYMSENDTSNEKNTIVFKLHVLCERGGPRLTVKTNEL 186
V+ DE+L+HRLGLIP+ S + + C++ P +VK
Sbjct: 61 VLADELLSHRLGLIPL--------------NSEGIENLSYSRDCTCDQYCPNCSVKL--- 103
Query: 187 KWLPNGSELPLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIR--PMLDITIARLGPG 244
EL + DS + F + L +P P+ I +L
Sbjct: 104 -------ELTAKCDSDSTMNVYSSDLAKFHNGSKLGDPVIRDPAHRGPL----ICKLRKH 152
Query: 245 QEIELEAHAVKGIGKTHAKWSPVATAWYRMLP 276
QE+ L A KGI K HAKWSP A + P
Sbjct: 153 QELRLTCIAKKGIAKEHAKWSPCAAIGFEYDP 184
>gi|72387431|ref|XP_844140.1| DNA-directed RNA polymerase II subunit 3 [Trypanosoma brucei
TREU927]
gi|62360648|gb|AAX81059.1| DNA-directed RNA polymerase II subunit 3, putative [Trypanosoma
brucei]
gi|70800672|gb|AAZ10581.1| DNA-directed RNA polymerase II subunit 3, putative [Trypanosoma
brucei brucei strain 927/4 GUTat10.1]
gi|261327301|emb|CBH10277.1| DNA-directed RNA polymerase II subunit 3,putative [Trypanosoma
brucei gambiense DAL972]
Length = 337
Score = 89.0 bits (219), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 72/240 (30%), Positives = 99/240 (41%), Gaps = 30/240 (12%)
Query: 90 FDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRLGLIPIIVDPRLF 149
F L +D + AN RR+L+AE+P + +E V I NTSV+ DE++AHR+GL+P+
Sbjct: 21 FKLNEVDNSFANGLRRVLLAEVPVLGVESVTIIQNTSVLPDEMIAHRIGLVPLY------ 74
Query: 150 EYMSENDTSNEKNTIVFKLHVLCERGGPRLTVKTNELKWLPNGSELPLETKPDSNPSSKP 209
S + F LC G T ELK ++ L+ DS
Sbjct: 75 --------SKRAKQMQFFHDCLCGGTGCIECQITGELKVRCPSNQHSLQVFADSLKIDDE 126
Query: 210 RTYTSFSSSQDLLPEFSNNPIRPMLDITIARLGPGQEIELEAHAVKGIGKTHAKWSPVAT 269
Y S + + + LG QEI L K I KTHAK+ PV+T
Sbjct: 127 GVYPVSSEER---------------GVWLLTLGRSQEINLRVLIRKSIAKTHAKFMPVST 171
Query: 270 AWYRMLPEIVLLEDV-EDEDAEKLVKTCPVNVFDIEDIGSGKKRATVAQPRACTLCRECL 328
R PE++L +DV D E+L + V I LC ECL
Sbjct: 172 VSMRYEPEVILNKDVISSLDPEQLRQWMRSCVHRPHSIAESNGEGHTGHIDVNKLCEECL 231
>gi|323308700|gb|EGA61941.1| Rpb3p [Saccharomyces cerevisiae FostersO]
Length = 318
Score = 88.6 bits (218), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 63/206 (30%), Positives = 101/206 (49%), Gaps = 36/206 (17%)
Query: 77 RVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHR 136
+V++ +KD+++F L +D A+AN+ RR++I E+PT+AI+ V + NT+V+ DE +AHR
Sbjct: 7 QVKIREASKDNVDFILSNVDLAMANSLRRVMIXEIPTLAIDSVEVETNTTVLADEFIAHR 66
Query: 137 LGLIPI-IVDPRLFEYMSE--NDTSNEKNTIVFKLHVLCERGGPRLTVKTNELKWLPNGS 193
LGLIP+ +D EY + + +K ++V L
Sbjct: 67 LGLIPLQSMDIEQLEYSRDCFCEDHCDKCSVVLTLQAFG--------------------- 105
Query: 194 ELPLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPI---RPMLDITIARLGPGQEIELE 250
E++ +N SK S +L+ +PI + + I +L GQE++L
Sbjct: 106 ----ESESTTNVYSKDLVIVS-----NLMGRNIGHPIIQDKEGNGVLICKLRKGQELKLT 156
Query: 251 AHAVKGIGKTHAKWSPVATAWYRMLP 276
A KGI K HAKW P A + P
Sbjct: 157 CVAKKGIAKEHAKWGPAAAIEFEYDP 182
>gi|374633843|ref|ZP_09706208.1| DNA-directed RNA polymerase, alpha subunit/40 kD subunit
[Metallosphaera yellowstonensis MK1]
gi|373523631|gb|EHP68551.1| DNA-directed RNA polymerase, alpha subunit/40 kD subunit
[Metallosphaera yellowstonensis MK1]
Length = 262
Score = 88.6 bits (218), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 76/256 (29%), Positives = 112/256 (43%), Gaps = 51/256 (19%)
Query: 78 VEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRL 137
++VI K + + G N+ RR + +P MA+++V + N S + DEVLAHRL
Sbjct: 3 IKVIEEEKGHINLLIHGYPLEFVNSVRRACMLFVPVMAVDEVYVIENNSPLYDEVLAHRL 62
Query: 138 GLIPIIVDPRLFEYM----SENDTSNEKNTIVFKLHVLCERGGPRLTVKTNELKWLPNGS 193
LIP + + Y EN T N CER ++ +
Sbjct: 63 ALIPFESNDAIDYYRRPEECENCTEN------------CERCFTKIYIDV---------- 100
Query: 194 ELPLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPMLDITIARLGPGQEIELEAHA 253
S ++ Y+ ++D P PI DI I LG Q++ LEA
Sbjct: 101 ---------SAEETQKMVYSRDIKTED--PHVV--PISR--DIPIVLLGKNQKVSLEAKV 145
Query: 254 VKGIGKTHAKWSPVATAWYRMLPEIVLLEDVEDEDAEKLVKTCPVNVFDIEDIGSGKKRA 313
G GK HAK+ PV+ A R P++ + +++ EK V+ CP VF + D +
Sbjct: 146 RLGYGKEHAKFMPVSKAVSRYRPKVEV-----EKNCEKAVEVCPEGVFKLVD-----GKL 195
Query: 314 TVAQPRACTLCRECLR 329
TV ACTLC ECL+
Sbjct: 196 TVENELACTLCEECLK 211
>gi|428184897|gb|EKX53751.1| hypothetical protein GUITHDRAFT_100722 [Guillardia theta CCMP2712]
Length = 319
Score = 88.6 bits (218), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 76/279 (27%), Positives = 128/279 (45%), Gaps = 55/279 (19%)
Query: 78 VEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRL 137
+EV L ++ F L D +IANA R+ +I+E+PT+AI+ V I N+SV+ DE +AHRL
Sbjct: 9 IEVNFLDDYNINFVLSNTDVSIANALRKAIISEVPTIAIDLVEIEENSSVLADEFIAHRL 68
Query: 138 GLIPII---------------VDPRLFEYMSENDTSNEKN-TIVFKLHVLCERGGP---R 178
GLIP++ V+ + ++ ++ S++K+ I F+L V P R
Sbjct: 69 GLIPLVSTRAMHADGPVPFRDVEGNITSFLWHHEASDDKDCEIKFELEVRNTEDNPMEVR 128
Query: 179 LTVKTNELKWLPNGSELPLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPMLDITI 238
L + L+ L +G + KP Y PE+ + I
Sbjct: 129 L-ILIRLLEVLRHGGGV------------KPVEYD---------PEYP---------VVI 157
Query: 239 ARLGPGQEIELEAHAVKGIGKTHAKWSPVATAWYRMLPEIVL----LEDVEDEDAEKLVK 294
A+L Q I+L A A KG+GK H+KWSP + ++ P + + +E + + + V+
Sbjct: 158 AKLKRNQAIKLTAIAKKGVGKMHSKWSPASGVYFTYEPVVTINYERMEGLSAQQRKTWVE 217
Query: 295 TCPVNVFDIEDIGSGKKRATVAQPRACTLCRECLRCGEE 333
CP + ++ +G+ EC + +E
Sbjct: 218 ACPPGILRFNEM-TGQVEVEDEINNGIAFSGECEKVAKE 255
>gi|427778887|gb|JAA54895.1| hypothetical protein [Rhipicephalus pulchellus]
Length = 250
Score = 88.2 bits (217), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 60/206 (29%), Positives = 93/206 (45%), Gaps = 44/206 (21%)
Query: 72 FCNNFRVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDE 131
+ N V + LT ++++F + D ++AN+ RR+ IAE PT+AI+ V + N++V+ DE
Sbjct: 3 YANQPSVHISELTDENVKFFVEDTDLSVANSLRRVFIAETPTLAIDWVQLEANSTVLHDE 62
Query: 132 VLAHRLGLIPIIVDPRLFEYMSENDTSNEKNTIVFKLHVLCERGGPRLTVKTNELKWLPN 191
+AHRLGLIP+ D + + + + C +LK
Sbjct: 63 FIAHRLGLIPLTSDEIV-------------DKMQYSRDCTC--------ADFXDLK---- 97
Query: 192 GSELPLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPMLDITIARLGPGQEIELEA 251
SS PR S +D E+ DI I +L GQE++ A
Sbjct: 98 --------------SSDPRVVPVTSRHKDDTNEYGETE-----DILIVKLRKGQEVKARA 138
Query: 252 HAVKGIGKTHAKWSPVATAWYRMLPE 277
+A KG GK HAKW+P + P+
Sbjct: 139 YAKKGFGKEHAKWNPTCGVAFEYDPD 164
>gi|323454964|gb|EGB10833.1| hypothetical protein AURANDRAFT_22116 [Aureococcus anophagefferens]
Length = 324
Score = 88.2 bits (217), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 75/250 (30%), Positives = 113/250 (45%), Gaps = 49/250 (19%)
Query: 77 RVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHR 136
+V V L ++ M F++ D + AN+ RR+++ E+ +MAI+ V NTSV+ DE++AHR
Sbjct: 15 QVSVRDLEENTMCFEVRDTDCSTANSLRRVMVGEVVSMAIDLVTFEENTSVVNDEIIAHR 74
Query: 137 LGLIPIIVDP--RLFEYMSENDTSNEKN--TIVFKLHVLC----------ERGGPRLTVK 182
LGL+PI R F + + D + + KLHV E+ P LTV
Sbjct: 75 LGLVPINDRDIRRRFRHTRDCDCDSHCDFCAATLKLHVSFDDRAKDLPEHEKNNP-LTVT 133
Query: 183 TNELKWLPNGSELPLETKPDSNP---SSKPRTYTSFSSSQDLLPEFSNNPIRPMLDITIA 239
T +L + PD P SK TS + I +
Sbjct: 134 TLDL----------VSDDPDVAPVHFVSKREESTSQETG-----------------IALV 166
Query: 240 RLGPGQEIELEAHAVKGIGKTHAKWSPVATAWYRMLPEIVLLEDVEDEDA----EKLVKT 295
+L GQE++L A G GK HAKW PV+ +R +PE+ + E A + +++
Sbjct: 167 KLAKGQELKLTCIAKLGCGKEHAKWIPVSKCVFRPVPEVTWDDAAVAELAPTLRDAIIQV 226
Query: 296 CPVNVFDIED 305
CP V D
Sbjct: 227 CPAGVLGYAD 236
>gi|390367669|ref|XP_003731306.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB3-like,
partial [Strongylocentrotus purpuratus]
Length = 262
Score = 88.2 bits (217), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 59/187 (31%), Positives = 92/187 (49%), Gaps = 29/187 (15%)
Query: 98 AIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRLGLIPIIVDPRLFEYMSENDT 157
++AN+ RR ++AE+PT+AI+ V I N+SV+ DE ++HR+GLIP+ D +
Sbjct: 16 SVANSIRRTILAEVPTIAIDWVEIQANSSVLHDEFISHRVGLIPLTSDEVV--------- 66
Query: 158 SNEKNTIVFKLHVLCERGGPRLTVKTNELKWLPNGSELPLETKPDSNPSSKPRTYTSFSS 217
+ + F CE +V EL L+ K + + + SS
Sbjct: 67 ----DKLNFNRDCGCEEFCSDCSV------------ELSLDVKCTDDQTRHVTSRDLLSS 110
Query: 218 SQDLLPEFSNNP----IRPMLDITIARLGPGQEIELEAHAVKGIGKTHAKWSPVATAWYR 273
+Q ++P S N + DI I +L GQE+ L A+A KG GK HAKW P A +
Sbjct: 111 NQKVVPVPSRNQESSDYGEVDDILIVKLRKGQELRLRAYAKKGFGKDHAKWVPTAAIAFE 170
Query: 274 MLPEIVL 280
P+ ++
Sbjct: 171 YDPDNIM 177
>gi|367035840|ref|XP_003667202.1| hypothetical protein MYCTH_2312782 [Myceliophthora thermophila ATCC
42464]
gi|347014475|gb|AEO61957.1| hypothetical protein MYCTH_2312782 [Myceliophthora thermophila ATCC
42464]
Length = 337
Score = 88.2 bits (217), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 67/203 (33%), Positives = 102/203 (50%), Gaps = 33/203 (16%)
Query: 80 VIRLTKDD---MEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHR 136
V+++++ D ++F+L D + AN+ RR+++AE+PT+AI+ V I N+SV+ DE ++HR
Sbjct: 17 VVKISQADSVRVKFELQNADLSFANSLRRVMLAEIPTIAIDLVEIEENSSVLADEFISHR 76
Query: 137 LGLIPI---IVDPRLFEYMSENDTSNEKNTIVFKLHVLCERGGPRLTVKTNELKWLPNGS 193
LGLIP+ VD L+ + D E ++ LH C G + V +L +P G
Sbjct: 77 LGLIPLNAEGVDNLLYARDCDCDGCCEHCSVRLTLHAKC-TGEENMHVFARDL--VPTGD 133
Query: 194 ELPLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPMLDITIARLGPGQEIELEAHA 253
+ +Q L N+ L I +L PGQEI+LE A
Sbjct: 134 RI----------------------NQVLGTPIVND--AEGLGPLILKLRPGQEIKLECIA 169
Query: 254 VKGIGKTHAKWSPVATAWYRMLP 276
KGI K HAKW+P A + P
Sbjct: 170 KKGIAKEHAKWAPSAAIGFEYDP 192
>gi|443895704|dbj|GAC73049.1| RNA polymerase II, subunit POLR2C/RPB3 [Pseudozyma antarctica T-34]
Length = 346
Score = 87.8 bits (216), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 67/224 (29%), Positives = 102/224 (45%), Gaps = 22/224 (9%)
Query: 65 NSLQLDHFCNNFRVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANN 124
+S + D ++ V +L +D F L +D + AN+ RRI+IA++PT+AI+ V I NN
Sbjct: 4 SSARYDVTAQRPKITVRQLNRDRANFILENVDLSFANSLRRIMIADIPTVAIDMVEIRNN 63
Query: 125 TSVIQDEVLAHRLGLIPIIVDPRLFEYMSENDTSNEKNTIVFKLHVLCERGGPRLTVKTN 184
T+V+ DE LAHRLGLIP++ + + +V CE G R +V+
Sbjct: 64 TTVLPDEFLAHRLGLIPLL-------------SMDCAKALVDHRDCACEDGCDRCSVELT 110
Query: 185 ELKWLPNGSELPLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNP--IRP------MLDI 236
L + ++ D S F P +P RP M I
Sbjct: 111 LRARCTTRGNLEVTSR-DLIRSDSIEGAQMFDDDAMNEPAAPKHPDFGRPVGHDGSMAPI 169
Query: 237 TIARLGPGQEIELEAHAVKGIGKTHAKWSPVATAWYRMLPEIVL 280
+ ++ GQE+++ A KG K HAKWSP + + P L
Sbjct: 170 MLVKMSKGQELDIRCIARKGFAKEHAKWSPCSAVGFEYDPHNAL 213
>gi|319411912|emb|CBQ73955.1| related to RPB3-DNA-directed RNA polymerase II chain [Sporisorium
reilianum SRZ2]
Length = 350
Score = 87.8 bits (216), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 62/208 (29%), Positives = 100/208 (48%), Gaps = 14/208 (6%)
Query: 77 RVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHR 136
++ V +L +D F L +D + AN+ RRI+IA++PT+AI+ V + NNT+V+ DE LAHR
Sbjct: 13 KITVRQLNRDHANFILENVDLSFANSLRRIMIADIPTVAIDMVEVRNNTTVLPDEFLAHR 72
Query: 137 LGLIPIIVDPRLFEYMSENDTSNEKN----TIVFKLHVLCERGGPRLTVKTNELKWLPNG 192
LG+IP++ + D + E ++ L C G L V + +L
Sbjct: 73 LGMIPLLSMDCAKALVDHRDCACEDGCDRCSVELTLRARCTTRG-NLEVTSRDLI---RS 128
Query: 193 SELPLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPMLDITIARLGPGQEIELEAH 252
+ T D + ++P + + + S P I + ++ GQE++L
Sbjct: 129 DTIESATIYDDDAMAEPAAPKHPDFGRPVGHDGSTPP------IMLVKMSKGQELDLRCI 182
Query: 253 AVKGIGKTHAKWSPVATAWYRMLPEIVL 280
A KG K HAKWSP + + P L
Sbjct: 183 ARKGFAKEHAKWSPCSAVGFEYDPHNAL 210
>gi|296109380|ref|YP_003616329.1| RNA polymerase insert [methanocaldococcus infernus ME]
gi|295434194|gb|ADG13365.1| RNA polymerase insert [Methanocaldococcus infernus ME]
Length = 195
Score = 87.8 bits (216), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 64/180 (35%), Positives = 83/180 (46%), Gaps = 55/180 (30%)
Query: 98 AIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRLGLIPIIVDPRLFEYMSENDT 157
+ +NA RRI+I+E+PT AIE V I N+S + DE+LAHRLGLIPI P
Sbjct: 25 SFSNAIRRIMISEVPTFAIEDVFIYENSSSMDDEILAHRLGLIPIKGKPAF--------- 75
Query: 158 SNEKNTIVFKLHVLCERGGPRLTVKTNELKWLPNGSELPLETKPDSNPSSKPRTYTSFSS 217
E TI+F L E+ GP V +++LK
Sbjct: 76 --ENETILFTL----EKEGP-CVVYSSDLK------------------------------ 98
Query: 218 SQDLLPEFSNNPIRPMLDITIARLGPGQEIELEAHAVKGIGKTHAKWSPVATAWYRMLPE 277
S+N +I I +LG Q I++E AV GIGK HAKW P A Y+ L E
Sbjct: 99 --------SDNGEVAFKNIPIVKLGEKQRIKIECEAVPGIGKVHAKWQP-CNAVYKQLSE 149
>gi|367055384|ref|XP_003658070.1| hypothetical protein THITE_2124530 [Thielavia terrestris NRRL 8126]
gi|347005336|gb|AEO71734.1| hypothetical protein THITE_2124530 [Thielavia terrestris NRRL 8126]
Length = 337
Score = 87.8 bits (216), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 65/203 (32%), Positives = 102/203 (50%), Gaps = 33/203 (16%)
Query: 80 VIRLTKDD---MEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHR 136
++++++ D ++++L +D A AN+ RR+++AE+PT+AI+ V I N+SV+ DE +AHR
Sbjct: 16 MVKISQADSVRVKYELSNVDLAFANSLRRVMLAEIPTIAIDLVEIEENSSVLADEFIAHR 75
Query: 137 LGLIPI---IVDPRLFEYMSENDTSNEKNTIVFKLHVLCERGGPRLTVKTNELKWLPNGS 193
LGLIP+ V L + D E ++ LH C G + V +L +P G
Sbjct: 76 LGLIPLNSEGVKDMLTSRECDCDGRCENCSVTLTLHAKC-TGEENMHVFARDL--VPTGE 132
Query: 194 ELPLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPMLDITIARLGPGQEIELEAHA 253
+ ++ S ++ L P I +L PGQEI+LE A
Sbjct: 133 RI-----------NQVIGTPVLSDAEGLGP-------------LILKLRPGQEIKLECIA 168
Query: 254 VKGIGKTHAKWSPVATAWYRMLP 276
KGI K HAKW+P A + P
Sbjct: 169 KKGIAKEHAKWAPSAAIGFEYDP 191
>gi|15668364|ref|NP_247160.1| DNA-directed RNA polymerase subunit D [Methanocaldococcus
jannaschii DSM 2661]
gi|2500626|sp|Q57648.1|RPOD_METJA RecName: Full=DNA-directed RNA polymerase subunit D
gi|1590937|gb|AAB98172.1| DNA-directed RNA polymerase, subunit D (rpoD) [Methanocaldococcus
jannaschii DSM 2661]
Length = 191
Score = 87.4 bits (215), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 61/177 (34%), Positives = 81/177 (45%), Gaps = 54/177 (30%)
Query: 98 AIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRLGLIPIIVDPRLFEYMSENDT 157
+ +NA RRI+I+E+PT AIE V I N+S + DE+LAHRLGLIPI P L
Sbjct: 25 SFSNAIRRIMISEVPTFAIEDVYIYENSSSMDDEILAHRLGLIPIKGKPLL--------- 75
Query: 158 SNEKNTIVFKLHVLCERGGPRLTVKTNELKWLPNGSELPLETKPDSNPSSKPRTYTSFSS 217
E I F L E+ GP TV +++LK
Sbjct: 76 --ENEVITFTL----EKEGP-CTVYSSDLK------------------------------ 98
Query: 218 SQDLLPEFSNNPIRPMLDITIARLGPGQEIELEAHAVKGIGKTHAKWSPVATAWYRM 274
S N +I I +LG GQ I++E A+ GIGK HAKW P + ++
Sbjct: 99 --------SENGEVAFKNIPIVKLGKGQRIQIECEAIPGIGKVHAKWQPCNAVYKQI 147
>gi|256810443|ref|YP_003127812.1| RNA polymerase insert [Methanocaldococcus fervens AG86]
gi|256793643|gb|ACV24312.1| RNA polymerase insert [Methanocaldococcus fervens AG86]
Length = 191
Score = 87.4 bits (215), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 64/180 (35%), Positives = 84/180 (46%), Gaps = 55/180 (30%)
Query: 98 AIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRLGLIPIIVDPRLFEYMSENDT 157
+ +NA RRI+I+E+PT AIE V I N+S + DE++AHRLGLIPI P L
Sbjct: 25 SFSNAIRRIMISEVPTYAIEDVYIFENSSSMDDEIIAHRLGLIPIKGKPLL--------- 75
Query: 158 SNEKNTIVFKLHVLCERGGPRLTVKTNELKWLPNGSELPLETKPDSNPSSKPRTYTSFSS 217
E I F L E+ GP TV +++LK
Sbjct: 76 --ENEIITFTL----EKEGP-CTVYSSDLK------------------------------ 98
Query: 218 SQDLLPEFSNNPIRPMLDITIARLGPGQEIELEAHAVKGIGKTHAKWSPVATAWYRMLPE 277
S N +I I +LG GQ+I++E AV GIGK HAKW P A Y+ + E
Sbjct: 99 --------SENGEVAFKNIPIVKLGNGQKIQIECEAVPGIGKVHAKWQP-CNAVYKQISE 149
>gi|296412916|ref|XP_002836165.1| hypothetical protein [Tuber melanosporum Mel28]
gi|295629972|emb|CAZ80356.1| unnamed protein product [Tuber melanosporum]
Length = 340
Score = 87.4 bits (215), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 63/191 (32%), Positives = 89/191 (46%), Gaps = 38/191 (19%)
Query: 92 LIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRLGLIPI----IVDPR 147
L D A ANA RRI++AE+PT+AI+ V I NTSVI DE L HRLG++P+ I D
Sbjct: 30 LSNCDLAFANALRRIMLAEIPTIAIDIVEIQTNTSVIPDEFLCHRLGMVPLDSTNIDDKL 89
Query: 148 LFEYMSENDTSNEKNTIVFKLHVLCERGGPRLTVKTNELKWLPNGSEL--PLETKPDSNP 205
++ D E+ ++ LH C G +TV +L + G++L P+ P+
Sbjct: 90 IYTRDCFCDQYCERCSVTLSLHARC-TGEDNVTVYARDLV-IAEGAQLGSPVINDPEGQG 147
Query: 206 SSKPRTYTSFSSSQDLLPEFSNNPIRPMLDITIARLGPGQEIELEAHAVKGIGKTHAKWS 265
+ I +L GQE+ L+ A KGI K HAKW+
Sbjct: 148 T------------------------------VICKLRKGQELRLKCIAKKGIAKEHAKWA 177
Query: 266 PVATAWYRMLP 276
P A + P
Sbjct: 178 PTAAVGFEYDP 188
>gi|427778021|gb|JAA54462.1| Putative rna polymerase ii subunit polr2c/rpb3 [Rhipicephalus
pulchellus]
Length = 324
Score = 87.4 bits (215), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 67/241 (27%), Positives = 110/241 (45%), Gaps = 40/241 (16%)
Query: 72 FCNNFRVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDE 131
+ N V + LT ++++F + D ++AN+ RR+ IAE PT+AI+ V + N++V+ DE
Sbjct: 3 YANQPSVHISELTDENVKFFVEDTDLSVANSLRRVFIAETPTLAIDWVQLEANSTVLHDE 62
Query: 132 VLAHRLGLIPIIVDPRLFEYMSENDTSN------------EKNTIVFKLHVLCERGG--P 177
+AHRLGLIP+ D + + D + E N+ V + R G P
Sbjct: 63 FIAHRLGLIPLTSDEIVDKMQYSRDCTCADXXXXIDWVQLEANSTVLHDEFIAHRLGLIP 122
Query: 178 RLTVK-TNELKWLPNGS----------ELPLETK----------PDSNPSSKPRTYTSFS 216
+ + +++++ + + E L+ K SS PR S
Sbjct: 123 LTSDEIVDKMQYSRDCTCADFCTECSVEFTLDVKCLDEQTRHVTTADLKSSDPRVVPVTS 182
Query: 217 SSQDLLPEFSNNPIRPMLDITIARLGPGQEIELEAHAVKGIGKTHAKWSPVATAWYRMLP 276
+D E+ DI I +L GQE++ A+A KG GK HAKW+P + P
Sbjct: 183 RHKDDTNEYGETE-----DILIVKLRKGQEVKARAYAKKGFGKEHAKWNPTCGVAFEYDP 237
Query: 277 E 277
+
Sbjct: 238 D 238
>gi|328853564|gb|EGG02702.1| hypothetical protein MELLADRAFT_72730 [Melampsora larici-populina
98AG31]
Length = 359
Score = 87.4 bits (215), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 69/209 (33%), Positives = 107/209 (51%), Gaps = 27/209 (12%)
Query: 74 NNFRVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVL 133
+N +V+V L + F + G+D A+AN+ RR ++A+L T+AI V NTSV+ DE++
Sbjct: 17 SNLQVKVTELDERHAAFVVEGVDLALANSLRRTIMADLTTVAIHSVEFEENTSVLPDEMI 76
Query: 134 AHRLGLIPIIVDPRLFEYMS--ENDTS----NEKNTIVFKLHVLCERGGPRLTVKTNELK 187
AHRLGL+P++ + L +Y+ + D + + +I L V G L V + +L
Sbjct: 77 AHRLGLMPLMSE-DLDKYLKNWQRDCTCLSFCDDCSIELVLSVKSTLPGETLEVTSKDLV 135
Query: 188 WLPNGSELPLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPMLDITIARLGPGQEI 247
P E D KP +T LP N +P + I +L GQE+
Sbjct: 136 ITPR------EDGGDRGDVGKPVQFT--------LP----NGEQP--GVLITKLRKGQEV 175
Query: 248 ELEAHAVKGIGKTHAKWSPVATAWYRMLP 276
+L+ A+KGI + HAKWS V+T + P
Sbjct: 176 KLKCRAIKGIAQEHAKWSAVSTIGFEYDP 204
>gi|444324054|ref|XP_004182667.1| hypothetical protein TBLA_0J01520 [Tetrapisispora blattae CBS 6284]
gi|387515715|emb|CCH63148.1| hypothetical protein TBLA_0J01520 [Tetrapisispora blattae CBS 6284]
Length = 335
Score = 87.4 bits (215), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 63/204 (30%), Positives = 101/204 (49%), Gaps = 32/204 (15%)
Query: 77 RVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHR 136
++++ TKD+++F L ID A+AN+ RR++IAE+PT+AI+ V + NT+V+ DE ++HR
Sbjct: 7 QIKIREATKDNVDFILSNIDMALANSLRRVMIAEIPTLAIDSVEVEMNTTVLADEFISHR 66
Query: 137 LGLIPI-IVDPRLFEYMSENDTSNEKNTIVFKLHVLCERGGPRLTVKTNELKWLPNGSEL 195
LGLIP+ D EY + + C++ LT++
Sbjct: 67 LGLIPLQSADIDQLEYCRDCFCEDH-----------CDKCSVVLTLQA------------ 103
Query: 196 PLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPI---RPMLDITIARLGPGQEIELEAH 252
E++ +N +K S +LL +PI + + I +L GQE+++
Sbjct: 104 VGESESTTNVYAKDLVIVS-----NLLGRNIGHPIIQDKEGNGVLICKLRKGQELKMTCV 158
Query: 253 AVKGIGKTHAKWSPVATAWYRMLP 276
A KGI K HAKW A Y P
Sbjct: 159 AKKGIAKEHAKWGATAAIEYEYDP 182
>gi|71018933|ref|XP_759697.1| hypothetical protein UM03550.1 [Ustilago maydis 521]
gi|46099249|gb|EAK84482.1| hypothetical protein UM03550.1 [Ustilago maydis 521]
Length = 329
Score = 87.4 bits (215), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 63/210 (30%), Positives = 102/210 (48%), Gaps = 18/210 (8%)
Query: 77 RVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHR 136
++ V +L +D F L +D + AN+ RRI+IA++PT+AI+ V I NNT+V+ DE+LAHR
Sbjct: 13 KITVRQLDRDHANFILENVDLSFANSLRRIMIADIPTVAIDMVEIRNNTTVLPDEMLAHR 72
Query: 137 LGLIPIIVDPRLFEYMSENDTSNEKN----TIVFKLHVLCERGGPRLTVKTNELKWLPNG 192
LG++P++ + D + E ++ L C G L V + +L
Sbjct: 73 LGMVPLLSMDCAKALVDHRDCACEDGCDRCSVELTLRARCTTRG-NLEVTSRDLI---RS 128
Query: 193 SELPLETKPDSNPSSKPRT--YTSFSSSQDLLPEFSNNPIRPMLDITIARLGPGQEIELE 250
+ T D + ++P + F P + I P I + ++ GQE+++
Sbjct: 129 DTIENATIYDDDAMAEPAAPKHPDFGR-----PVGHDGSIAP---IMLVKMSKGQELDIR 180
Query: 251 AHAVKGIGKTHAKWSPVATAWYRMLPEIVL 280
A KG K HAKWSP + + P L
Sbjct: 181 CIARKGFAKEHAKWSPCSAVGFEYDPHNAL 210
>gi|399949868|gb|AFP65525.1| DNA-directed RNA polymerase II [Chroomonas mesostigmatica CCMP1168]
Length = 304
Score = 87.4 bits (215), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 62/200 (31%), Positives = 98/200 (49%), Gaps = 28/200 (14%)
Query: 74 NNFRVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVL 133
N+ R+ + ++ + + L ID ++ N+ RR++I E+PTMAI+ + + N+S+ DE L
Sbjct: 2 NSSRLTIDSISNFETKISLKEIDISLINSLRRVMINEIPTMAIDLIFVEINSSIFHDEFL 61
Query: 134 AHRLGLIPIIVD-PRLFEYMSENDTSN--EKNTIVFKLHVLCERGGPRLTVKTNELKWLP 190
AHRLGLIP+ + F Y E + K ++ F L V+ + R T+ + P
Sbjct: 62 AHRLGLIPLFSESANQFRYTRECECEKFCSKCSVAFSLDVIA-KDKYRDVFSTDLIVLNP 120
Query: 191 NGSELPLETKP--DSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPMLDITIARLGPGQEIE 248
S P DS + PR + P+L I++L GQ ++
Sbjct: 121 KESFFAKHVSPIHDSGTADFPR-------------------LEPIL---ISKLSQGQRLK 158
Query: 249 LEAHAVKGIGKTHAKWSPVA 268
L A KGIG HAKWSP++
Sbjct: 159 LIGVAKKGIGLEHAKWSPIS 178
>gi|517290|emb|CAA56480.1| RNA polymerase subunit D [Sulfolobus acidocaldarius]
Length = 264
Score = 87.0 bits (214), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 77/251 (30%), Positives = 110/251 (43%), Gaps = 50/251 (19%)
Query: 100 ANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRLGLIPIIVDPRLFEYMSENDTSN 159
N+ RR I +P MA+++V N S + DE+LAHRL L+P + D L Y + +
Sbjct: 25 VNSIRRASILYVPVMAVDEVYFIENNSPLYDEILAHRLALVPFVSDEALEHYRPPEECAE 84
Query: 160 EKNTIVFKLHVLCERGGPRLTVKTNELKWLPNGSELPLETKPDSNPSSKPRTYTSFSSSQ 219
K C+ R+ L +E K S S+
Sbjct: 85 CKEN--------CDGCYNRVY--------------LDVEAKDQS----------LMIYSR 112
Query: 220 DLLPEFSNNPIRPMLD-ITIARLGPGQEIELEAHAVKGIGKTHAKWSPVATAWYRMLPEI 278
DL E + I P+ I I LG Q+I LEA G GK H K+SPV+ + R P++
Sbjct: 113 DLKSE--DQMITPVSGAIPIVLLGSKQKISLEARLRLGYGKEHIKYSPVSVSIVRYYPKV 170
Query: 279 VLLEDVEDEDAEKLVKTCPVNVFDIEDIGSGKKRATVAQPRACTLCRECLR-CGEEWEKR 337
+L + EK V+ CP VF +E+ + V +C LC ECL+ C
Sbjct: 171 TVL-----GNCEKAVEVCPEGVFAMEN-----NKLVVKNELSCILCEECLKYCA----GS 216
Query: 338 VSIRRVKDHFI 348
VSI V++ FI
Sbjct: 217 VSIESVENKFI 227
>gi|315229895|ref|YP_004070331.1| DNA-directed RNA polymerase subunit D [Thermococcus barophilus MP]
gi|315182923|gb|ADT83108.1| DNA-directed RNA polymerase subunit D [Thermococcus barophilus MP]
Length = 258
Score = 87.0 bits (214), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 64/202 (31%), Positives = 97/202 (48%), Gaps = 45/202 (22%)
Query: 77 RVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHR 136
+++V+ +D + F L G+DAA ANA RR++I E+PT A+++V N S + DE++AHR
Sbjct: 2 KIKVLEKREDAIRFILEGVDAAFANALRRVIIGEVPTFAVDEVEFYENDSALFDEIIAHR 61
Query: 137 LGLIPIIVDPRLFEYMSENDTSNEKNTIVFKLHVLCERGGPRLTVKTNELKWLPNGSELP 196
L +IP+ FE + ++ T+ L E GP + V + +LK
Sbjct: 62 LAMIPLTTPYDRFEL---DALELDEYTVTLSL----EAEGPGV-VYSGDLK--------- 104
Query: 197 LETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPMLDITIARLGPGQEIELEAHAVKG 256
+P KP T +I I +L GQ++ L A+A G
Sbjct: 105 -----SDDPDVKPVT----------------------PNIPIVKLAEGQKLTLNAYAKLG 137
Query: 257 IGKTHAKWSPVATAWYRMLPEI 278
GK HAKW P A+Y+ L EI
Sbjct: 138 RGKDHAKWQP-GFAYYKYLTEI 158
>gi|388854978|emb|CCF51481.1| related to RPB3-DNA-directed RNA polymerase II chain [Ustilago
hordei]
Length = 346
Score = 87.0 bits (214), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 62/208 (29%), Positives = 99/208 (47%), Gaps = 14/208 (6%)
Query: 77 RVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHR 136
++ V +L +D F L +D + AN+ RRI+IA++PT+AI+ V I NNT+V+ DE LAHR
Sbjct: 13 KITVRQLNRDHANFILENVDLSFANSLRRIMIADIPTVAIDMVEIRNNTTVLPDEFLAHR 72
Query: 137 LGLIPIIVDPRLFEYMSENDTSNEKN----TIVFKLHVLCERGGPRLTVKTNELKWLPNG 192
LG++P++ + D + E ++ L C G L V + +L
Sbjct: 73 LGMVPLLSMDCSKALVDHRDCACEDGCDRCSVELTLRARCTTRG-NLEVTSRDLIRSDTI 131
Query: 193 SELPLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPMLDITIARLGPGQEIELEAH 252
+ N + P+ + F P + I P I + ++ GQE+++
Sbjct: 132 ENATIYDDDAMNEPAAPK-HPDFGR-----PVGHDGSIPP---IMLVKMSKGQELDIRCI 182
Query: 253 AVKGIGKTHAKWSPVATAWYRMLPEIVL 280
A KG K HAKWSP + + P L
Sbjct: 183 ARKGFAKEHAKWSPCSAVGFEYDPHNAL 210
>gi|388581049|gb|EIM21360.1| DNA-directed RNA polymerase II subunit RPB3 [Wallemia sebi CBS
633.66]
Length = 316
Score = 86.7 bits (213), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 70/219 (31%), Positives = 99/219 (45%), Gaps = 44/219 (20%)
Query: 76 FRVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAH 135
RV V L + + F L +D A+ANA RRILIA+LPTMAI+ V I N+SV+ DE +AH
Sbjct: 1 MRVRVRSLESERINFVLEDVDLALANALRRILIADLPTMAIDIVNIEENSSVLVDEFIAH 60
Query: 136 RLGLIPIIVDPRLFEYMSENDTSNEKNTIVFKLHVLCERGGPRLTVKTNELKWLPNGSEL 195
RLG++P+I T+ +K I + +C P+ +V EL
Sbjct: 61 RLGMVPLI------------STACDK-LINYNRDCVCLDHCPKCSV------------EL 95
Query: 196 PLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPMLD------------------IT 237
L K + P + T + + S N I P + IT
Sbjct: 96 ELNIKC-TTPETVLVTSNHLQIKGQVANDTSGNLIDPPIGLPDNFGLPINYHQEGAYPIT 154
Query: 238 IARLGPGQEIELEAHAVKGIGKTHAKWSPVATAWYRMLP 276
+ +L GQE+ + A KGI K HAKW P + + P
Sbjct: 155 LCKLRQGQELRINCIAKKGINKEHAKWGPTSAVAFEYDP 193
>gi|20094910|ref|NP_614757.1| DNA-directed RNA polymerase alpha subunit [Methanopyrus kandleri
AV19]
gi|23822100|sp|Q8TVB8.1|RPOD_METKA RecName: Full=DNA-directed RNA polymerase subunit D
gi|19888146|gb|AAM02687.1| DNA-directed RNA polymerase alpha subunit [Methanopyrus kandleri
AV19]
Length = 275
Score = 86.7 bits (213), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 73/234 (31%), Positives = 106/234 (45%), Gaps = 44/234 (18%)
Query: 76 FRVEVIRLTKDDME---FDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEV 132
RV + K D+E F + A N RR L +PT+ IE+V+I N + + DE+
Sbjct: 4 LRVRLYDYRKADVERATFIIEETSAEFVNTIRRALYTLVPTLRIEEVIIYENDTPMYDEM 63
Query: 133 LAHRLGLIPIIVDPRLFEYMSENDTSNEKNTIVFKLHVLCERGGPRLTVKTNELKWLPNG 192
LAHRLGLIP+ VD + F+L LC+ GG G
Sbjct: 64 LAHRLGLIPLRVD----------------DIDQFELPDLCDCGG--------------KG 93
Query: 193 SELPLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPML-DITIARLGPGQEIELEA 251
E + + + + Y ++DL +F + + P D I +G Q I LE
Sbjct: 94 CE-KCQVRAELEVEGPTKVY-----ARDL--KFDHPDVEPAFPDTLITEVGEDQRIRLEV 145
Query: 252 HAVKGIGKTHAKWSPVATAWYRMLPEIVLLEDVEDEDAEKLVKTCPVNVFDIED 305
AV G+G HAKW PV+ Y+ LPE+ + ED E +K+ CP + IE+
Sbjct: 146 IAVPGLGLEHAKWKPVSAVGYKGLPELEIDEDKLKE--KKITYECPQGIIRIEN 197
>gi|170092317|ref|XP_001877380.1| predicted protein [Laccaria bicolor S238N-H82]
gi|164647239|gb|EDR11483.1| predicted protein [Laccaria bicolor S238N-H82]
Length = 304
Score = 86.3 bits (212), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 66/204 (32%), Positives = 101/204 (49%), Gaps = 17/204 (8%)
Query: 78 VEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRL 137
V + L KD + F L +D A AN+ RR+++A++PT+AI+ V I NT+V+ DE +AHRL
Sbjct: 11 VRIRELKKDRVNFVLGNVDLAFANSLRRVMMADIPTVAIDMVEIEINTTVLPDEFIAHRL 70
Query: 138 GLIPIIVDPRLFEYMSENDTSNEKN----TIVFKLHVLCERGGPRLTVKTNELKWLPNGS 193
G++P++ S D + I+ L+V C + V + L +P
Sbjct: 71 GMVPLLSSNCDEAIRSTRDCTCLAGCSFCAIMLVLNVGC-HDDTTMEVTSAHLDVIPYPE 129
Query: 194 ELPLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNP-IRPMLDITIARLGPGQEIELEAH 252
E L+T SK Y P N P + P+L I ++ GQE++++
Sbjct: 130 E-NLDTSDSGEELSKRGEYFGH-------PVGKNEPGVAPIL---ICKIRKGQELKVKCV 178
Query: 253 AVKGIGKTHAKWSPVATAWYRMLP 276
A KGI K HAKWSP + + P
Sbjct: 179 AKKGIAKEHAKWSPCSAVSFEYDP 202
>gi|389638262|ref|XP_003716764.1| DNA-directed RNA polymerase II subunit RPB3 [Magnaporthe oryzae
70-15]
gi|351642583|gb|EHA50445.1| DNA-directed RNA polymerase II subunit RPB3 [Magnaporthe oryzae
70-15]
gi|440465143|gb|ELQ34483.1| DNA-directed RNA polymerase II subunit RPB3 [Magnaporthe oryzae
Y34]
gi|440489706|gb|ELQ69335.1| DNA-directed RNA polymerase II subunit RPB3 [Magnaporthe oryzae
P131]
Length = 330
Score = 86.3 bits (212), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 60/226 (26%), Positives = 97/226 (42%), Gaps = 44/226 (19%)
Query: 60 SMGVDNSLQLDHFCNNFRVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKV 119
S G +N+ +L F + + + F+L +D ++AN+ RR+++AE+PT+AI+
Sbjct: 4 STGYENTDELGAVVKIFHADSVHVN-----FELSNVDLSLANSIRRVMLAEIPTVAIDNC 58
Query: 120 LIANNTSVIQDEVLAHRLGLIPIIV-DPRLFEYMSENDTSN--EKNTIVFKLHVLCERGG 176
I NTSV+ DE +AHRLGL+P+ Y + D E +++ +H CE
Sbjct: 59 EIKENTSVLADEFIAHRLGLVPLSARGASELVYARDCDCEQYCENCSVIITIHAKCESED 118
Query: 177 PRLTVKTNELKWLPNGSEL------PLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPI 230
P +K + +G + P+ T PD
Sbjct: 119 PNYVMKVYARDMVVDGRRVNQSVGTPVITDPDG--------------------------- 151
Query: 231 RPMLDITIARLGPGQEIELEAHAVKGIGKTHAKWSPVATAWYRMLP 276
L + + +L QE+ + A KGI K HAKW P + P
Sbjct: 152 ---LGVILFKLRRNQEVHIRCVAKKGIAKEHAKWCPATAIGFEYDP 194
>gi|70605933|ref|YP_254803.1| DNA-directed RNA polymerase subunit D [Sulfolobus acidocaldarius
DSM 639]
gi|449066125|ref|YP_007433207.1| DNA-directed RNA polymerase subunit D [Sulfolobus acidocaldarius
N8]
gi|449068401|ref|YP_007435482.1| DNA-directed RNA polymerase subunit D [Sulfolobus acidocaldarius
Ron12/I]
gi|73920766|sp|P39471.2|RPOD_SULAC RecName: Full=DNA-directed RNA polymerase subunit D
gi|68566581|gb|AAY79510.1| DNA-directed RNA polymerase subunit D [Sulfolobus acidocaldarius
DSM 639]
gi|449034633|gb|AGE70059.1| DNA-directed RNA polymerase subunit D [Sulfolobus acidocaldarius
N8]
gi|449036909|gb|AGE72334.1| DNA-directed RNA polymerase subunit D [Sulfolobus acidocaldarius
Ron12/I]
Length = 264
Score = 86.3 bits (212), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 72/253 (28%), Positives = 110/253 (43%), Gaps = 54/253 (21%)
Query: 100 ANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRLGLIPIIVDPRLFEYMSENDTSN 159
N+ RR I +P MA+++V N S + DE+LAHRL L+P + D L Y + +
Sbjct: 25 VNSIRRASILYVPVMAVDEVYFIENNSPLYDEILAHRLALVPFVSDEALEHYRPPEECAE 84
Query: 160 EK---NTIVFKLHVLCERGGPRLTVKTNELKWLPNGSELPLETKPDSNPSSKPRTYTSFS 216
K + ++++ E L + + +LK S+ + T S
Sbjct: 85 CKENCDGCYNRVYLDVEAKDQPLMIYSRDLK-------------------SEDQMITPVS 125
Query: 217 SSQDLLPEFSNNPIRPMLDITIARLGPGQEIELEAHAVKGIGKTHAKWSPVATAWYRMLP 276
+ I I LG Q+I LEA G GK H K+SPV+ + R P
Sbjct: 126 GA-----------------IPIVLLGSKQKISLEARLRLGYGKEHIKYSPVSVSIVRYYP 168
Query: 277 EIVLLEDVEDEDAEKLVKTCPVNVFDIEDIGSGKKRATVAQPRACTLCRECLR-CGEEWE 335
++ +L + EK V+ CP VF +E+ + V +C LC ECL+ C
Sbjct: 169 KVTVL-----GNCEKAVEVCPEGVFAMEN-----NKLVVKNELSCILCEECLKYCA---- 214
Query: 336 KRVSIRRVKDHFI 348
VSI V++ FI
Sbjct: 215 GSVSIESVENKFI 227
>gi|190348772|gb|EDK41297.2| conserved hypothetical protein [Meyerozyma guilliermondii ATCC
6260]
Length = 305
Score = 86.3 bits (212), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 64/201 (31%), Positives = 95/201 (47%), Gaps = 28/201 (13%)
Query: 77 RVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHR 136
RV + + +D ++F L +D ++AN+ RR ++AE+PT+AI+ V I NTSV+ DE L+HR
Sbjct: 9 RVTIRQAERDHVDFILKDVDLSMANSIRRTMLAEVPTLAIDLVEIDVNTSVLADEFLSHR 68
Query: 137 LGLIPIIVDPRLFEYMSENDTSNEKNTIVFKLHVLCERGGPRLTVKTNELKWLPNGSELP 196
LG+IP+ S + + + C++ P +VK EL
Sbjct: 69 LGMIPL--------------NSEGIDNLSYSRDCTCDQYCPNCSVKL----------ELT 104
Query: 197 LETKPDSNPSSKPRTYTSFSSSQDLL-PEFSNNPIRPMLDITIARLGPGQEIELEAHAVK 255
+ DS S F + L P ++ R L I +L QE+ L A K
Sbjct: 105 AKCDSDSTMSVYATDLAKFHNGSKLGDPVVRDHHQRGPL---ICKLRKHQELRLTCIAKK 161
Query: 256 GIGKTHAKWSPVATAWYRMLP 276
GI K HAKWSP A + P
Sbjct: 162 GIAKEHAKWSPCAAIGFEYDP 182
>gi|305662634|ref|YP_003858922.1| RNA polymerase insert [Ignisphaera aggregans DSM 17230]
gi|304377203|gb|ADM27042.1| RNA polymerase insert [Ignisphaera aggregans DSM 17230]
Length = 281
Score = 85.9 bits (211), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 73/263 (27%), Positives = 121/263 (46%), Gaps = 48/263 (18%)
Query: 76 FRVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAH 135
+ V R + + +E + G+ + NA RR +A++PT A+++V++ NTS + DE+LAH
Sbjct: 1 MNINVRRWSNEIIEIAISGVPLPLLNALRRYALAKVPTYAVDEVMVVINTSHMFDEMLAH 60
Query: 136 RLGLIPIIVDPRL---------FEYMSENDTSNEKNTIVFKLHVLCERGGPRLTVKTNEL 186
R+ +IP+ + L Y +D+ ++ + V CE+ + L
Sbjct: 61 RIAMIPLRSEEALERIKGLDIDVCYKCGSDSEDKPPSDV------CEKCYVHMF-----L 109
Query: 187 KWLPNGSELPLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPML-DITIARLGPGQ 245
+ + SE YT +SS EF ++P+ +I I L PGQ
Sbjct: 110 EAVAEDSE-----------------YTVYSSDIKSEDEF----VKPVYGNIPIVILSPGQ 148
Query: 246 EIELEAHAVKGIGKTHAKWSPVATAWYRMLPEIVLLEDVEDEDAEKLVKTCPVNVFDIED 305
I LE A G G H KWSP A R + +I + ED+ + +K ++ CP NV +
Sbjct: 149 RISLELRARVGRGIEHIKWSPATIAVTRYVADIRISEDLCNL-CKKCIEVCPKNVLTVY- 206
Query: 306 IGSGKKRATVAQPRACTLCRECL 328
+ R V C LC++C+
Sbjct: 207 ----QNRIQVKDKYECILCKQCM 225
>gi|448514979|ref|XP_003867217.1| RNA polymerase II subunit B44 [Candida orthopsilosis Co 90-125]
gi|380351556|emb|CCG21779.1| RNA polymerase II subunit B44 [Candida orthopsilosis]
Length = 317
Score = 85.9 bits (211), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 63/194 (32%), Positives = 89/194 (45%), Gaps = 30/194 (15%)
Query: 85 KDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRLGLIPIIV 144
+D ++F L +D ++ANA RR ++AE+PT+AI+ V I NTSV+ DE LAHRLGLIP+
Sbjct: 16 EDRVDFVLGNVDLSVANALRRTMLAEVPTLAIDLVEIDVNTSVLADEFLAHRLGLIPL-- 73
Query: 145 DPRLFEYMSENDTSNEKNTIVFKLHVLCERGGPRLTVKTNELKWLPNGSELPLETKPDSN 204
S T+ + C+ P+ +V L L K D++
Sbjct: 74 ------------NSENIETLKYSRDCTCDNYCPKCSVT------------LELTAKCDTD 109
Query: 205 PSSKPRTYTSFSSSQDLLPEFSNNPIRPMLD--ITIARLGPGQEIELEAHAVKGIGKTHA 262
+ F + N +R D I +L QE+ L A KGI K HA
Sbjct: 110 STMNVYASDLFKLANG--SSLGNPVVRDQADRGSIICKLRKHQELRLTCIAKKGIAKEHA 167
Query: 263 KWSPVATAWYRMLP 276
KWSP A + P
Sbjct: 168 KWSPCAAIGFEYDP 181
>gi|340053034|emb|CCC47320.1| putative DNA-directed RNA polymerase II subunit 3 [Trypanosoma
vivax Y486]
Length = 337
Score = 85.9 bits (211), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 73/246 (29%), Positives = 106/246 (43%), Gaps = 38/246 (15%)
Query: 88 MEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRLGLIPIIVDPR 147
+EF L +D + AN RR+++AE+P + E V I NTSV+ DE+LAHR+GL+P+
Sbjct: 19 LEFQLDEVDNSFANGLRRVMLAEVPVLGAESVTIIKNTSVLPDEMLAHRIGLVPLY---- 74
Query: 148 LFEYMSENDTSNEKNTIVFKLHVLCERGGPRLTVKTNELKWLPNGSELPLETKPDSNPSS 207
S + + F LC GG T L + L+ DS
Sbjct: 75 ----------SMKARKMPFPTDCLCGGGGCVECQVTGLLTVRCPADQHSLQVFTDSLKID 124
Query: 208 KPRTYTSFSSSQDLLPEFSNNPIRPMLDITIARLGPGQEIELEAHAVKGIGKTHAKWSPV 267
Y S + L + LG QE++L K I KTHAK+ PV
Sbjct: 125 DEEVYPVSSEERGLW---------------LLTLGRSQELDLRIVIRKSIAKTHAKFMPV 169
Query: 268 ATAWYRMLPEIVL----LEDVEDEDAEKLVKTCPVNVFDIEDIGSGKK-RATVAQPRACT 322
+T R +IV+ + + E ++L CP + GSG+ A P T
Sbjct: 170 STVAMRYATDIVINTEGMAKLTPEQRKQLACRCPDKAYKRN--GSGEAGHADDTGP--FT 225
Query: 323 LCRECL 328
LCR+C+
Sbjct: 226 LCRDCV 231
>gi|345565094|gb|EGX48049.1| hypothetical protein AOL_s00081g153 [Arthrobotrys oligospora ATCC
24927]
Length = 345
Score = 85.5 bits (210), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 63/192 (32%), Positives = 94/192 (48%), Gaps = 34/192 (17%)
Query: 89 EFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRLGLIPI----IV 144
+F L +D A AN+ RRI++AE+PT+AI+ V + NN+SV+ DE+L+HRLGL+P+ I
Sbjct: 27 DFVLSNVDLAFANSIRRIILAEVPTLAIDLVEVINNSSVLPDELLSHRLGLVPLESSNID 86
Query: 145 DPRLFEYMSENDTSNEKNTIVFKLHVLCERGGPRLTVKTNELKWLPNGSELPLETKPDSN 204
+ L+ + D E+ ++V L C G +TV +L + G++L
Sbjct: 87 EKMLYTRDCDCDGYCERCSVVLTLVAKC-TGDRNVTVYARDLA-VAAGAQL--------- 135
Query: 205 PSSKPRTYTSFSSSQDLLPEFSNNPIRPMLDITIARLGPGQEIELEAHAVKGIGKTHAKW 264
S + E I I +L GQE+ L+ A KGI K HAKW
Sbjct: 136 ------------GSPVITDEAQKGSI-------ICKLRKGQELNLKCIAKKGIAKEHAKW 176
Query: 265 SPVATAWYRMLP 276
P A + P
Sbjct: 177 QPCAAVAFEYDP 188
>gi|403217190|emb|CCK71685.1| hypothetical protein KNAG_0H02700 [Kazachstania naganishii CBS
8797]
Length = 326
Score = 85.5 bits (210), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 59/206 (28%), Positives = 103/206 (50%), Gaps = 36/206 (17%)
Query: 77 RVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHR 136
+V++ +D+++F L ++ A+AN+ RR+++AE+PT+AI+ V + NT+V+ DE +AHR
Sbjct: 7 QVKIREANRDNVDFILSNVELAMANSLRRVMVAEIPTLAIDSVQVETNTTVLADEFIAHR 66
Query: 137 LGLIPI-IVDPRLFEYMSE--NDTSNEKNTIVFKLHVLCERGGPRLTVKTNELKWLPNGS 193
LGLIP+ +D EY + + +K ++V L +
Sbjct: 67 LGLIPLQSMDIERLEYCRDCFCEDHCDKCSVVLTLQAVG--------------------- 105
Query: 194 ELPLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPI---RPMLDITIARLGPGQEIELE 250
E++ +N +K T S +L+ +PI + + I +L GQE+++
Sbjct: 106 ----ESESTTNVYAKDLTIVS-----NLMGRNIGHPIIQDKENNGVLICKLRKGQELKMT 156
Query: 251 AHAVKGIGKTHAKWSPVATAWYRMLP 276
A KGI K HAKW P + + P
Sbjct: 157 CIAKKGIAKEHAKWGPTSAIEFEYDP 182
>gi|452846630|gb|EME48562.1| hypothetical protein DOTSEDRAFT_162154 [Dothistroma septosporum
NZE10]
Length = 364
Score = 85.5 bits (210), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 66/197 (33%), Positives = 101/197 (51%), Gaps = 24/197 (12%)
Query: 88 MEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRLGLIPII---V 144
++F+L A AN+ RR+++AE+PT+AI+ V I NNTSV+ DE LAHRLGL+P+ V
Sbjct: 29 IKFNLTNTSLAFANSIRRVMLAEIPTIAIDLVEIENNTSVLADEFLAHRLGLVPLSTKGV 88
Query: 145 DPRLFEYMSENDTSNEKNTIVFKLHVLCERGGPRLTVKTNELKWLPNGSELPLETKPDSN 204
D + D + ++V +L+V L V +L +E++
Sbjct: 89 DDMVDGRDCTCDDYCDNCSVVLRLNVANRNSDQNLKVFARDLF---------VESQAGYG 139
Query: 205 PSSKPRTYTSFSSSQDLLPEFS---NNPIR--PMLDITIARLGPGQEIELEAHAVKGIGK 259
+ SSS DL P S ++P + P+L +L GQE++L+ A +GI K
Sbjct: 140 GRGNG---ANGSSSDDLPPRGSPILSDPAQQGPLL----CQLRRGQELKLKCVAKRGIAK 192
Query: 260 THAKWSPVATAWYRMLP 276
HAKW+P A + P
Sbjct: 193 EHAKWAPTAAIGFEYDP 209
>gi|256089309|ref|XP_002580754.1| DNA-directed rna polymerase II subunit [Schistosoma mansoni]
gi|350646602|emb|CCD58722.1| DNA-directed rna polymerase II subunit,putative [Schistosoma
mansoni]
Length = 266
Score = 85.5 bits (210), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 62/214 (28%), Positives = 101/214 (47%), Gaps = 31/214 (14%)
Query: 72 FCNNFRVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDE 131
+ N V + ++++F L D ++ANA RR+ IAE+PT+AI+ V I +N +++ DE
Sbjct: 3 YANQPIVTLTSFNNENIKFVLEETDLSVANAIRRVCIAEVPTLAIDWVQIEDNNTMLNDE 62
Query: 132 VLAHRLGLIPIIVDPRL--FEYMSENDTSN--EKNTIVFKLHVLCERGGPRLTVKTNELK 187
+A R+GLIP+ D + Y E E+ ++ L V C PR
Sbjct: 63 FIAQRVGLIPLTCDNVVDKMTYFRECPCREFCEQCSVELTLDVCCTTDAPRHVT------ 116
Query: 188 WLPNGSELPLETKPDSNP-SSKPRTYTSFSSSQDLLPEFSNNPIRPMLDITIARLGPGQE 246
G++L + + D P S+ +S+ + +L I ++ GQ
Sbjct: 117 ----GADL-ISSNRDVQPVPSRDADESSYVGQESIL---------------IVKMRKGQR 156
Query: 247 IELEAHAVKGIGKTHAKWSPVATAWYRMLPEIVL 280
++L A A KG GK HAKW+P A + P+ L
Sbjct: 157 LKLRAIAKKGFGKEHAKWNPTAGVGFEYDPDNAL 190
>gi|254582264|ref|XP_002497117.1| ZYRO0D15796p [Zygosaccharomyces rouxii]
gi|238940009|emb|CAR28184.1| ZYRO0D15796p [Zygosaccharomyces rouxii]
Length = 308
Score = 85.5 bits (210), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 62/206 (30%), Positives = 102/206 (49%), Gaps = 36/206 (17%)
Query: 77 RVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHR 136
+V++ T+++++F L ++ A+AN+ RR++IAE+PT+AI+ V + NTSV+ DE +AHR
Sbjct: 7 QVKIREATRENVDFILSHVELAMANSLRRVMIAEIPTLAIDSVEVETNTSVLADEFIAHR 66
Query: 137 LGLIPI-IVDPRLFEYMSE--NDTSNEKNTIVFKLHVLCERGGPRLTVKTNELKWLPNGS 193
LGLIP+ D EY + + +K ++V L +
Sbjct: 67 LGLIPLQSTDIEQLEYCRDCFCEDHCDKCSVVLTLQAIG--------------------- 105
Query: 194 ELPLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPI---RPMLDITIARLGPGQEIELE 250
E++ +N +K S +L+ +PI + + I +L GQE+ L+
Sbjct: 106 ----ESESTTNVYAKDLVIVS-----NLMGRNLGHPIIQDKEGNGVLICKLRKGQELTLK 156
Query: 251 AHAVKGIGKTHAKWSPVATAWYRMLP 276
A KGI K HAKW P A + P
Sbjct: 157 CVAKKGIAKEHAKWGPSAAIEFEYDP 182
>gi|392593588|gb|EIW82913.1| insert subdomain of RNA polymerase alpha subunit [Coniophora
puteana RWD-64-598 SS2]
Length = 418
Score = 85.5 bits (210), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 62/204 (30%), Positives = 106/204 (51%), Gaps = 17/204 (8%)
Query: 78 VEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRL 137
+++ + KD + F L +D A+AN+ RR+++A++PT+AI+ V + NT+V+ DE +AHRL
Sbjct: 11 LKIREVKKDSVNFTLENVDLALANSIRRVVMADIPTVAIDMVEVQANTTVLPDEFIAHRL 70
Query: 138 GLIPIIVDPRLFEYMSENDTSNEKN----TIVFKLHVLCERGGPRLTVKTNELKWLPNGS 193
G++P++ D + E+ +I +L + C L V +N L+ +P
Sbjct: 71 GMVPLVSTNCDEAMRLLRDCTCEEGCQFCSIELRLDISCHD-NRTLEVTSNHLEVVP--- 126
Query: 194 ELPLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNP-IRPMLDITIARLGPGQEIELEAH 252
P + +S + S S P N+P +P+L I ++ GQE+ ++
Sbjct: 127 -FPFQDTAESLSGDE----LSKRSEDFGHPVGKNDPSAQPVL---ICKMRKGQELRIKCI 178
Query: 253 AVKGIGKTHAKWSPVATAWYRMLP 276
A KGI K HAKWSP + + P
Sbjct: 179 AKKGIAKEHAKWSPCSAVAFEYDP 202
>gi|398411480|ref|XP_003857078.1| hypothetical protein MYCGRDRAFT_67037 [Zymoseptoria tritici IPO323]
gi|339476963|gb|EGP92054.1| hypothetical protein MYCGRDRAFT_67037 [Zymoseptoria tritici IPO323]
Length = 361
Score = 85.5 bits (210), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 68/210 (32%), Positives = 101/210 (48%), Gaps = 27/210 (12%)
Query: 77 RVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHR 136
+V + K ++F L A AN+ RR ++AE+PT+AI+ V + NTSV+ DE LAHR
Sbjct: 18 KVTIRETNKTTIKFALSNTSLAFANSIRRTMLAEIPTIAIDLVEVEANTSVLADEFLAHR 77
Query: 137 LGLIPI-------IVDPRLFEYMSENDTSNEKNTIVFKLHVLCERGGPRLTVKTNELKWL 189
LGLIP+ +VD R + + D ++ +++ +L+V L V +L
Sbjct: 78 LGLIPLSTKGVEEMVDWRDCD---QCDEHCDQCSVILRLNVANRSSDQNLKVFARDL--- 131
Query: 190 PNGSELPLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPI---RPMLDITIARLGPGQE 246
+S ++ +S D LPE PI R I +L GQE
Sbjct: 132 ----------FVESGANAGYNRSNGMGNSSDELPE-RGRPIVMDRDNQGPLICQLRRGQE 180
Query: 247 IELEAHAVKGIGKTHAKWSPVATAWYRMLP 276
I+L+ A KGI K HAKW+P A + P
Sbjct: 181 IKLKCIARKGIAKEHAKWAPTAAIGFEYDP 210
>gi|70945964|ref|XP_742745.1| DNA-directed RNA polymerase II [Plasmodium chabaudi chabaudi]
gi|56521898|emb|CAH80621.1| DNA-directed RNA polymerase II, putative [Plasmodium chabaudi
chabaudi]
Length = 331
Score = 85.5 bits (210), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 54/197 (27%), Positives = 97/197 (49%), Gaps = 25/197 (12%)
Query: 78 VEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRL 137
+E+ ++K++M F L + A+ANA RRI+++E+PT+A++ V + NTS DE +AHR+
Sbjct: 11 IEIKSISKNEMSFILYNSNTALANALRRIMLSEVPTLAVDIVNVYENTSPFHDEFIAHRI 70
Query: 138 GLIPI---IVDPRLFEYMSENDTSNEKNTIVFKLHVLCERGGPRLTVKTNELKWLPNGSE 194
GLIPI + F + + + T+ + + V C ++ V +++ L +
Sbjct: 71 GLIPIDSRNIKSYEFRERCKCKETCSRCTVQYIIEVKCNNAN-KIDVSHYDIEALDHEPN 129
Query: 195 LPLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPMLDITIARLGPGQEIELEAHAV 254
+P+ D+ ++ + T+ I I L Q + ++ A
Sbjct: 130 IPMPIPNDNKHNNIDKMDTA---------------------IPIVTLSKNQTLHMKLTAT 168
Query: 255 KGIGKTHAKWSPVATAW 271
KGIGK HAKW P ++
Sbjct: 169 KGIGKMHAKWIPANVSY 185
>gi|378732910|gb|EHY59369.1| DNA-directed RNA polymerase II subunit C [Exophiala dermatitidis
NIH/UT8656]
Length = 335
Score = 85.1 bits (209), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 72/233 (30%), Positives = 104/233 (44%), Gaps = 42/233 (18%)
Query: 52 VMYSGAYASMGVDNSLQLDHFCNNFRVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAEL 111
+ Y+G +A G D ++ + +V V + +D +F L A+AN+ RR ++AE+
Sbjct: 1 MAYNG-FAGFGEDGMDGVE--TSGPKVTVREVEQDRCDFVLQSCSLALANSLRRAILAEI 57
Query: 112 PTMAIEKVLIANNTSVIQDEVLAHRLGLIPIIVD--PRLFEYMSENDTSN---EKNTIVF 166
PT+AI+ V I N+SV+ DE LAHRL LIP+ Y + D + E ++V
Sbjct: 58 PTIAIDLVDIITNSSVLPDEYLAHRLALIPLASKGVGENLNYTRDCDRCDDHCEYCSVVL 117
Query: 167 KLHVLCERGGPRLTVKTNELKWLPNGSELPLETKPDSNPSSKPRTYTSFSSSQDLLPE-- 224
+LH C R G + R T QD + +
Sbjct: 118 RLHARCTRPGTMMVYA---------------------------RDLTVADPRQDGIGQPV 150
Query: 225 -FSNNPIRPMLDITIARLGPGQEIELEAHAVKGIGKTHAKWSPVATAWYRMLP 276
N P+ IA+L GQEI LE A KGI K HAKW+P A + P
Sbjct: 151 IRDVNGTGPL----IAKLRQGQEIHLECIAKKGIAKEHAKWAPTAAVGFEYDP 199
>gi|226490156|emb|CAX69320.1| DNA-directed RNA polymerase II subunit C [Schistosoma japonicum]
Length = 266
Score = 85.1 bits (209), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 62/214 (28%), Positives = 100/214 (46%), Gaps = 31/214 (14%)
Query: 72 FCNNFRVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDE 131
+ N V + ++++F L D ++ANA RR+ IAE+PT+AI+ V I N +++ DE
Sbjct: 3 YANQPIVTLTSFNNENIKFVLEETDLSVANAIRRVCIAEVPTLAIDWVQIEENNTMLNDE 62
Query: 132 VLAHRLGLIPIIVDPRL--FEYMSENDTSN--EKNTIVFKLHVLCERGGPRLTVKTNELK 187
+A R+GLIP+ D + Y E E+ ++ L V C PR
Sbjct: 63 FIAQRVGLIPLTCDNVVDKMTYFRECPCREFCEQCSVELTLDVCCTTDAPRHVT------ 116
Query: 188 WLPNGSELPLETKPDSNP-SSKPRTYTSFSSSQDLLPEFSNNPIRPMLDITIARLGPGQE 246
G++L + + D P S+ +S+ + +L I ++ GQ
Sbjct: 117 ----GADL-ISSNRDVQPVPSRDADESSYVGQESIL---------------IVKMRKGQR 156
Query: 247 IELEAHAVKGIGKTHAKWSPVATAWYRMLPEIVL 280
++L A A KG GK HAKW+P A + P+ L
Sbjct: 157 LKLRAIAKKGFGKEHAKWNPTAGVGFEYDPDNAL 190
>gi|390368205|ref|XP_781436.3| PREDICTED: DNA-directed RNA polymerase II subunit RPB3-like isoform
1, partial [Strongylocentrotus purpuratus]
Length = 388
Score = 84.7 bits (208), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 60/190 (31%), Positives = 92/190 (48%), Gaps = 29/190 (15%)
Query: 99 IANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRLGLIPIIVDPRLFEYMSENDTS 158
+AN+ RR ++AE+PT+AI+ V I N+SV+ DE ++HR+GLIP+ D +
Sbjct: 143 VANSIRRTILAEVPTIAIDWVEIQANSSVLHDEFISHRVGLIPLTSDEVV---------- 192
Query: 159 NEKNTIVFKLHVLCERGGPRLTVKTNELKWLPNGSELPLETKPDSNPSSKPRTYTSFSSS 218
+ + F CE +V EL L+ K + + + SS+
Sbjct: 193 ---DKLNFNRDCGCEEFCSDCSV------------ELSLDVKCTDDQTRHVTSRDLLSSN 237
Query: 219 QDLLPEFSNNP----IRPMLDITIARLGPGQEIELEAHAVKGIGKTHAKWSPVATAWYRM 274
Q ++P S N + DI I +L GQE+ L A+A KG GK HAKW P A +
Sbjct: 238 QKVVPVPSRNQESSDYGEVDDILIVKLRKGQELRLRAYAKKGFGKDHAKWVPTAAIAFEY 297
Query: 275 LPEIVLLEDV 284
P+ ++ V
Sbjct: 298 DPDNIMRHTV 307
>gi|146412808|ref|XP_001482375.1| conserved hypothetical protein [Meyerozyma guilliermondii ATCC
6260]
Length = 305
Score = 84.7 bits (208), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 64/201 (31%), Positives = 94/201 (46%), Gaps = 28/201 (13%)
Query: 77 RVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHR 136
RV + + +D ++F L +D ++AN+ RR ++AE+PT+AI+ V I NTSV+ DE L+HR
Sbjct: 9 RVTIRQAERDHVDFILKDVDLSMANSIRRTMLAEVPTLAIDLVEIDVNTSVLADEFLSHR 68
Query: 137 LGLIPIIVDPRLFEYMSENDTSNEKNTIVFKLHVLCERGGPRLTVKTNELKWLPNGSELP 196
LG+IP+ S + + + C++ P VK EL
Sbjct: 69 LGMIPL--------------NSEGIDNLSYSRDCTCDQYCPNCLVKL----------ELT 104
Query: 197 LETKPDSNPSSKPRTYTSFSSSQDLL-PEFSNNPIRPMLDITIARLGPGQEIELEAHAVK 255
+ DS S F + L P ++ R L I +L QE+ L A K
Sbjct: 105 AKCDSDSTMSVYATDLAKFHNGSKLGDPVVRDHHQRGPL---ICKLRKHQELRLTCIAKK 161
Query: 256 GIGKTHAKWSPVATAWYRMLP 276
GI K HAKWSP A + P
Sbjct: 162 GIAKEHAKWSPCAAIGFEYDP 182
>gi|327400272|ref|YP_004341111.1| DNA-directed RNA polymerase subunit D [Archaeoglobus veneficus
SNP6]
gi|327315780|gb|AEA46396.1| DNA-directed RNA polymerase subunit D [Archaeoglobus veneficus
SNP6]
Length = 261
Score = 84.7 bits (208), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 75/259 (28%), Positives = 115/259 (44%), Gaps = 56/259 (21%)
Query: 86 DDMEFDLIGI--DA--AIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRLGLIP 141
+D EF + I DA A AN+FRR + + +PTMA++ V + NTS + DE+LAHR+GLIP
Sbjct: 7 EDSEFRAVFILRDAPIAFANSFRRAMKSLVPTMAVDYVDVYLNTSYLYDEILAHRIGLIP 66
Query: 142 IIVDPRLFEYMSENDTSNE---KNTIVFKLHVLCERGGPRLTVKTNELKWLPNGSELPLE 198
+ + F E E + +L+V GP+L + +
Sbjct: 67 LKTNLEKFNMPDECSCGGEGCPNCQVSLRLNV----EGPKLVYSGDFV------------ 110
Query: 199 TKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPMLDITIARLGPGQEIELEAHAVKGIG 258
S P T +P + N P + L GQ++ +EA A G G
Sbjct: 111 -------SDDPET----------VPVYDNIP--------VVELYKGQQLMIEAVARLGTG 145
Query: 259 KTHAKWSPVATAWYRMLPEIVLLEDVEDEDAEKLVKTCPVNVFDIEDIGSGKKRATVAQP 318
K H+K+ PV+ Y+++P I + E V C NV + +D + V
Sbjct: 146 KEHSKYQPVSICAYKVIPRIEI--SGECNGCGDCVNACSRNVLEAKD-----GKIEVKNI 198
Query: 319 RACTLCRECLR-CGEEWEK 336
+C++C EC+ C EE K
Sbjct: 199 LSCSMCMECVNVCTEEAIK 217
>gi|146304892|ref|YP_001192208.1| DNA-directed RNA polymerase D [Metallosphaera sedula DSM 5348]
gi|145703142|gb|ABP96284.1| DNA-directed RNA polymerase, subunit D [Metallosphaera sedula DSM
5348]
Length = 262
Score = 84.7 bits (208), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 72/240 (30%), Positives = 106/240 (44%), Gaps = 55/240 (22%)
Query: 99 IANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRLGLIPIIVDPRLFEYMSEND-- 156
N+ RR + +P MA+++V + N S + DE+LAHRLGLIP L Y +
Sbjct: 24 FVNSIRRASMLYVPVMAVDEVYVIENNSPLYDEMLAHRLGLIPFDSKDALDYYRRPEECI 83
Query: 157 --TSNEKNTIVFKLHVLCERGGPR--LTVKTNELKWLPNGSELPLETKPDSNPSSKPRTY 212
T N C+R + + VK + + + ++ E P+ P SK
Sbjct: 84 ECTEN------------CDRCFTKAYIDVKAEDSQVMVYSRDIRTED-PNVTPISK---- 126
Query: 213 TSFSSSQDLLPEFSNNPIRPMLDITIARLGPGQEIELEAHAVKGIGKTHAKWSPVATAWY 272
DI I LG Q++ LE G GK HAK++PV+ A
Sbjct: 127 ----------------------DIPIVLLGKNQKVTLEMKMRLGYGKEHAKFNPVSLAIL 164
Query: 273 RMLPEIVLLEDVEDEDAEKLVKTCPVNVFDIEDIGSGKKRATVAQPRACTLCRECLRCGE 332
R P++ + ++D EK V+ CP VF E+ GK + V ACTLC EC++ E
Sbjct: 165 RYKPKVEV-----NKDCEKAVEVCPERVFSFEN---GKLK--VVNEMACTLCEECVKACE 214
>gi|378756240|gb|EHY66265.1| RNA polymerase II subunit 3 [Nematocida sp. 1 ERTm2]
Length = 254
Score = 84.7 bits (208), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 63/196 (32%), Positives = 94/196 (47%), Gaps = 31/196 (15%)
Query: 77 RVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHR 136
++E+ +T+D+++F L +ANA RR+++ E+PT+AI+ V N +VI +E+ R
Sbjct: 3 KIEIEEVTEDNIKFTLEDCTLGMANALRRVIMTEIPTLAIDIVQFDKNYTVIPEEMTTDR 62
Query: 137 LGLIPIIVDPRLFEYMSENDTSNEKNTIVFKLHVLCERGGPRLTVKTNELKWLPNGSELP 196
LGLIP I + +Y+ D S C+ ++ +
Sbjct: 63 LGLIP-IESSTVEKYLYPKDCS-------------CKSFCKNCSI------------SIV 96
Query: 197 LETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPMLDITIARLGPGQEIELEAHAVKG 256
L+ K D P T T S S + S N P I RLG Q I+ + AVKG
Sbjct: 97 LDVKNDG-----PTTLTVTSKSLFMEGGVSLNIGDPKHPSIITRLGHKQSIKCKCIAVKG 151
Query: 257 IGKTHAKWSPVATAWY 272
+GK HAKWSPVAT +
Sbjct: 152 VGKKHAKWSPVATVAF 167
>gi|441597761|ref|XP_004093284.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed RNA polymerase II
subunit RPB3 [Nomascus leucogenys]
Length = 258
Score = 84.7 bits (208), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 65/221 (29%), Positives = 101/221 (45%), Gaps = 28/221 (12%)
Query: 72 FCNNFRVEVIRLTKDDMEFDLIGIDAAI-ANAFRRILIAELPTMAIEKVLIANNTSVIQD 130
+ N V + LT ++++F + D A+ N ++ + +AI+ V I N+SV+ D
Sbjct: 3 YANQPTVRITELTDENVKFIIENTDLALXVNLMAKLHVCFFHFLAIDWVQIDANSSVLHD 62
Query: 131 EVLAHRLGLIPIIVDPRLFEYMSENDTSNEKN----TIVFKLHVLCERGGPRLTVKTNEL 186
E +AHRLGLIP+I D + + D + E+ ++ F L V C R + +
Sbjct: 63 EFIAHRLGLIPLISDDIVDKLQYSRDCTCEEFCPECSVEFTLDVRCNEDQTRHVTSRDLI 122
Query: 187 KWLPNGSELPLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPMLDITIARLGPGQE 246
S+ PR S ++D P N DI I +L GQE
Sbjct: 123 -------------------SNSPRVIPVTSRNRDNDP----NDYVEQDDILIVKLRKGQE 159
Query: 247 IELEAHAVKGIGKTHAKWSPVATAWYRMLPEIVLLEDVEDE 287
+ L A+A KG GK HAKW+P A + PE L++ E +
Sbjct: 160 LRLRAYAKKGFGKEHAKWNPTAGVAFEYDPEYSELDEDESQ 200
>gi|67540164|ref|XP_663856.1| hypothetical protein AN6252.2 [Aspergillus nidulans FGSC A4]
gi|40739446|gb|EAA58636.1| hypothetical protein AN6252.2 [Aspergillus nidulans FGSC A4]
gi|259479538|tpe|CBF69852.1| TPA: RNA polymerase II subunit 3 (AFU_orthologue; AFUA_2G13090)
[Aspergillus nidulans FGSC A4]
Length = 333
Score = 84.3 bits (207), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 64/200 (32%), Positives = 96/200 (48%), Gaps = 45/200 (22%)
Query: 88 MEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRLGLIPIIVD-- 145
++F L +D A AN+ RR+++AE+PTMAI+ V + N+SV+ DE+LAHRLGLIP+
Sbjct: 24 VDFKLSSVDLAFANSLRRVMLAEIPTMAIDIVEVEKNSSVLPDEMLAHRLGLIPLDSKNC 83
Query: 146 PRLFEYMSENDTSNE--KNTIVFKLHVLCE-----RGGPRLTVKTNEL--KWLPNGSELP 196
+ EY + + + + ++ LH C R R V T E +W+ N P
Sbjct: 84 DQDVEYTRDCECEDHCARCSVTLSLHARCTSDEIMRVYARDLVITGERANEWVGN----P 139
Query: 197 LETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPMLDITIARLGPGQEIELEAHAVKG 256
+ T PD N P+ I +L GQE+++ A KG
Sbjct: 140 VITDPD-----------------------GNGPL-------ICKLRRGQELKMTCIAKKG 169
Query: 257 IGKTHAKWSPVATAWYRMLP 276
I K H+KW+P A + P
Sbjct: 170 IAKEHSKWAPTAAIGFEYDP 189
>gi|171689616|ref|XP_001909748.1| hypothetical protein [Podospora anserina S mat+]
gi|170944770|emb|CAP70881.1| unnamed protein product [Podospora anserina S mat+]
Length = 334
Score = 84.3 bits (207), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 67/222 (30%), Positives = 107/222 (48%), Gaps = 35/222 (15%)
Query: 58 YASMGVDNSLQLDHFCNNFRVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIE 117
Y M +D++ L + + +R+ +F+L D + AN+ RR+++AE+PT+AI+
Sbjct: 3 YDPMAMDDAESLGPVVKISQADSVRV-----KFELQNADISFANSLRRVMLAEIPTIAID 57
Query: 118 KVLIANNTSVIQDEVLAHRLGLIPI---IVDPRLFEYMSENDTSNEKNTIVFKLHVLCER 174
V I +N+SV+ DE +AHRLGLIP+ V+ L+ + + E ++ LH C
Sbjct: 58 LVEIESNSSVLADEFIAHRLGLIPLNAEGVEHLLYSRDCDCEEYCENCSVKLTLHAKC-T 116
Query: 175 GGPRLTVKTNELKWLPNGSELPLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPML 234
G ++V +L +P G + +Q L N+ +
Sbjct: 117 GYENMSVSARDL--VPVGERI----------------------NQSLGTPVIND--KDGT 150
Query: 235 DITIARLGPGQEIELEAHAVKGIGKTHAKWSPVATAWYRMLP 276
I +L P QEI+LE A KGI K HAKW+P A + P
Sbjct: 151 GPLILKLRPEQEIKLECIAKKGIAKEHAKWAPSAAIGFEYDP 192
>gi|358341556|dbj|GAA27309.2| DNA-directed RNA polymerase II subunit RPB3 [Clonorchis sinensis]
Length = 266
Score = 84.3 bits (207), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 63/217 (29%), Positives = 98/217 (45%), Gaps = 37/217 (17%)
Query: 72 FCNNFRVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDE 131
+ N V + ++ +F + D ++ANA RR+ IAE+PT+AI+ V I N +++ DE
Sbjct: 3 YANQPIVTLTSYNNENCKFIIEETDLSVANAIRRVCIAEVPTLAIDWVQIEENNTMLNDE 62
Query: 132 VLAHRLGLIPIIVDPRL--FEYMSENDTSN--EKNTIVFKLHVLCERGGPRLTVKTNELK 187
+A R+GLIP+ D + Y E E+ ++ L V C PR
Sbjct: 63 FIAQRVGLIPLTSDSVVDKMAYFRECPCREFCEQCSVELTLDVCCTTDAPRHVT------ 116
Query: 188 WLPNGSELPLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPML----DITIARLGP 243
G++L SS++D+ P S +P I I ++
Sbjct: 117 ----GADL-------------------LSSNRDVQPVPSRDPDDAAYVGQESILIVKMRK 153
Query: 244 GQEIELEAHAVKGIGKTHAKWSPVATAWYRMLPEIVL 280
GQ ++L A A KG GK HAKW+P A + P+ L
Sbjct: 154 GQRLKLRAIAKKGFGKEHAKWNPTAGVGFEYDPDNAL 190
>gi|242214615|ref|XP_002473129.1| predicted protein [Postia placenta Mad-698-R]
gi|220727790|gb|EED81699.1| predicted protein [Postia placenta Mad-698-R]
Length = 265
Score = 84.3 bits (207), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 63/205 (30%), Positives = 96/205 (46%), Gaps = 32/205 (15%)
Query: 78 VEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRL 137
V + L KD + F + +D A+AN+ RR+++A++PT+AI+ V I NT+V+ DE +AHRL
Sbjct: 6 VRIRELQKDHVNFVVENVDLALANSLRRVMMADIPTVAIDMVEIETNTTVLPDEFIAHRL 65
Query: 138 GLIPIIVDPRLFEYMSENDTSNEKNTIVFKLHVLCERGGPRLTVKTNELKWLPNGS-ELP 196
G+IP++ +SN C+ G R T L W + EL
Sbjct: 66 GMIPLV-------------SSN------------CDEGM-RYTRDCTCLSWCQFCAVELT 99
Query: 197 LETK-PDSNPSSKPRTYTSFSSSQDLLPEFSNNPIR----PMLDITIARLGPGQEIELEA 251
L D + S PE +P+ + + IA++ GQE+ L
Sbjct: 100 LHVACHDGVAMDVTSMHLDVSDELAKRPENFGHPVGKFDPSVSPVLIAKIRKGQELRLRC 159
Query: 252 HAVKGIGKTHAKWSPVATAWYRMLP 276
A KG+ K HAKWSP + + P
Sbjct: 160 IAKKGVAKEHAKWSPCSAVAFEYDP 184
>gi|300681098|sp|P0CG28.1|RPOD_METAC RecName: Full=DNA-directed RNA polymerase subunit D
Length = 266
Score = 84.0 bits (206), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 68/254 (26%), Positives = 109/254 (42%), Gaps = 45/254 (17%)
Query: 75 NFRVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLA 134
V+++ L+ +F L + A AN RR ++A++PT+AIE V + +NTSV+ DE LA
Sbjct: 2 TMEVDILELSDRSAKFVLSNVSTAFANGIRRAMVADVPTLAIEYVNLYDNTSVLYDEQLA 61
Query: 135 HRLGLIPIIVDPRLFEYMSENDTSNEKNTIVFKLHVLCERGGPRLTVKTNELKWLPNGSE 194
RL LIP+ D + +E D + ++ + GP TV + +L
Sbjct: 62 LRLSLIPLATDIETYLPQAECDVCGGEGCPACEVSLTLSAEGPG-TVYSRDLI------- 113
Query: 195 LPLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPMLDITIARLGPGQEIELEAHAV 254
SS P+ P P ++ I L GQ++ LEA A
Sbjct: 114 -----------SSDPKI----------------QPADP--NVPIVELKKGQKLVLEAIAH 144
Query: 255 KGIGKTHAKWSPVATAWYRMLPEIVLLEDVEDEDA-EKLVKTCPVNVFDIEDIGSGKKRA 313
G G+ KW Y+ +P I +E+ DA CP + +E+ G+
Sbjct: 145 MGYGRDSVKWQAGVACGYKNMPVIT----IENCDACGHCAAECPKGIISVEEAGAKIAEE 200
Query: 314 TVAQPRACTLCREC 327
+ + C++CR C
Sbjct: 201 DIMK---CSICRLC 211
>gi|315425723|dbj|BAJ47379.1| DNA-directed RNA polymerase subunit D [Candidatus Caldiarchaeum
subterraneum]
gi|343484524|dbj|BAJ50178.1| DNA-directed RNA polymerase subunit D [Candidatus Caldiarchaeum
subterraneum]
Length = 215
Score = 83.6 bits (205), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 73/252 (28%), Positives = 115/252 (45%), Gaps = 62/252 (24%)
Query: 86 DDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRLGLIPIIVD 145
+ + D+ + +ANA RR++I E+PTMA+E++L+ N+S + +EVLAHR+ LIP I D
Sbjct: 9 ESITLDVTDLPHPLANALRRMIIREVPTMAVEEILVIENSSPMTNEVLAHRISLIPFITD 68
Query: 146 PRLFEYMSENDTSNEKNTIVFKLHVLCERGGPRLTVKTNELKWLPNGSELPLETKPDSNP 205
F E + CE+ R ++ +
Sbjct: 69 LDNFNVAEECSCQSRLG---------CEKCVVRFVLR--------------------AEA 99
Query: 206 SSKPRTYTSFSSSQDLLPEFSNNPIRPM-LDITIARLGPGQEIELEAHAVKGIGKTHAKW 264
+ +P T S +D+ PE + + P +I I L P Q+IELE + G G+ HAKW
Sbjct: 100 ADQPVTVYS----RDIKPERHDTKVAPFDGNIPIVVLAPRQKIELELYVRLGRGRKHAKW 155
Query: 265 -SPVATAW------------YRMLP--EIVLLEDVEDEDAEKLVKTCPVNVFDIEDIGSG 309
S +AT + Y LP +VL +A ++VKT IE+IG+G
Sbjct: 156 QSGIATLYQENSRWLLYVESYGFLPPRRMVL-------EAARIVKT------RIEEIGAG 202
Query: 310 KKRATVAQPRAC 321
K +P++
Sbjct: 203 LKELMAREPQSA 214
>gi|15922388|ref|NP_378057.1| DNA-directed RNA polymerase subunit D [Sulfolobus tokodaii str. 7]
gi|20978711|sp|Q96YW0.1|RPOD_SULTO RecName: Full=DNA-directed RNA polymerase subunit D
gi|15623177|dbj|BAB67166.1| DNA-directed RNA polymerase subunit D [Sulfolobus tokodaii str. 7]
Length = 264
Score = 83.6 bits (205), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 78/271 (28%), Positives = 116/271 (42%), Gaps = 53/271 (19%)
Query: 83 LTKDDMEFDLI--GIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRLGLI 140
L+K++ LI + N+ RR I +P MA+++V N S + DE+LAHRL +I
Sbjct: 6 LSKENNSLKLIVGNYPLELVNSIRRASILYVPVMAVDEVYFIENNSPLYDEILAHRLAMI 65
Query: 141 PIIVDPRLFEYMSENDTSNEKNTIVFKLHVLCERGGPR--LTVKTNELKWLPNGSELPLE 198
P D L Y + + K C+ R L V NE +
Sbjct: 66 PFSSDEALDHYRPPEECAECKEN--------CDGCYARVYLDVGANEGE----------- 106
Query: 199 TKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPML-DITIARLGPGQEIELEAHAVKGI 257
T S+DL + + I P+ +I I LGP Q++ LEA G
Sbjct: 107 --------------TVMVYSRDL--KTDDPAIVPISGNIPIVLLGPKQKVTLEARLRLGY 150
Query: 258 GKTHAKWSPVATAWYRMLPEIVLLEDVEDEDAEKLVKTCPVNVFDIEDIGSGKKRATVAQ 317
GK H K+SPV+ A R P + + + EK + CP VF +E+ + V
Sbjct: 151 GKEHIKFSPVSIAVVRYYPHVEV-----KGNCEKAFEVCPEGVFGMEN-----GKLFVKN 200
Query: 318 PRACTLCRECLRCGEEWEKRVSIRRVKDHFI 348
ACTLC EC++ E + I V++ +I
Sbjct: 201 EVACTLCEECIK---YCENNIFISAVENKYI 228
>gi|68478788|ref|XP_716556.1| hypothetical protein CaO19.1248 [Candida albicans SC5314]
gi|68478891|ref|XP_716500.1| hypothetical protein CaO19.8832 [Candida albicans SC5314]
gi|46438170|gb|EAK97505.1| hypothetical protein CaO19.8832 [Candida albicans SC5314]
gi|46438227|gb|EAK97561.1| hypothetical protein CaO19.1248 [Candida albicans SC5314]
gi|238881321|gb|EEQ44959.1| DNA-directed RNA polymerase II 45 kDa polypeptide [Candida albicans
WO-1]
Length = 318
Score = 83.6 bits (205), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 65/204 (31%), Positives = 92/204 (45%), Gaps = 35/204 (17%)
Query: 78 VEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRL 137
V + KD + F L +D A+AN+ RR +IAE+PT+AI+ V I NTSV+ DE L+HRL
Sbjct: 11 VTIREAEKDHVNFILKNVDLAVANSMRRTIIAEVPTLAIDLVEIDVNTSVLADEFLSHRL 70
Query: 138 GLIPII---VDPRLFEYMSENDTSNEKNTIVFKLHVLCERGGPRLTVKTNELKWLPNGSE 194
GLIP++ +D + D K ++ +L C ++ K NGS+
Sbjct: 71 GLIPLVSEGIDNLTYSRDCTCDNYCSKCSVTLQLIANCATESTMNVYASDLQKMSHNGSK 130
Query: 195 L--PLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPMLDITIARLGPGQEIELEAH 252
L P+ P + P+ I +L QE+ L
Sbjct: 131 LGDPVIRDPQ-----------------------ARGPL-------ICKLRKHQELSLTCI 160
Query: 253 AVKGIGKTHAKWSPVATAWYRMLP 276
A KGI K HAKWSP A + P
Sbjct: 161 AKKGIAKEHAKWSPTAAIGFEYDP 184
>gi|302348806|ref|YP_003816444.1| DNA-directed RNA polymerase subunit D [Acidilobus saccharovorans
345-15]
gi|302329218|gb|ADL19413.1| DNA-directed RNA polymerase subunit D [Acidilobus saccharovorans
345-15]
Length = 287
Score = 83.6 bits (205), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 60/200 (30%), Positives = 94/200 (47%), Gaps = 36/200 (18%)
Query: 77 RVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHR 136
+V ++ L + + G A NA RR+ ++E+PTMA++ V +N S + DE++AHR
Sbjct: 5 KVSIVELGNSRITVSMEGFPVAYGNALRRLALSEVPTMAVDFVYFYDNESSVYDEIIAHR 64
Query: 137 LGLIPIIVDPRLFEYMSENDTSN--EKNTIVFKLHVLCERGGPRLTVKTNELKWLPNGSE 194
LGL+ + D L +Y S + SN E ++ F ++
Sbjct: 65 LGLLVLRSDEALRKYGSPEECSNASENDSHCF--------------------------AQ 98
Query: 195 LPLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPMLDIT-IARLGPGQEIELEAHA 253
+ LE + + +S + + DL +FS+ IRP+ T I L PGQ I L +A
Sbjct: 99 VYLEYEVPQDAAS-----GVYVKASDL--KFSDPDIRPIYPETPIVYLAPGQRIHLVGYA 151
Query: 254 VKGIGKTHAKWSPVATAWYR 273
G G H KWSP + A R
Sbjct: 152 RLGRGYEHGKWSPASVAVLR 171
>gi|241954894|ref|XP_002420168.1| DNA-directed RNA polymerase II subunit, putative [Candida
dubliniensis CD36]
gi|223643509|emb|CAX42390.1| DNA-directed RNA polymerase II subunit, putative [Candida
dubliniensis CD36]
Length = 313
Score = 83.6 bits (205), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 65/204 (31%), Positives = 92/204 (45%), Gaps = 35/204 (17%)
Query: 78 VEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRL 137
V + KD + F L +D A+AN+ RR +IAE+PT+AI+ V I NTSV+ DE L+HRL
Sbjct: 11 VTIREAEKDHVNFILKNVDLAVANSMRRTIIAEVPTLAIDLVEIDVNTSVLADEFLSHRL 70
Query: 138 GLIPII---VDPRLFEYMSENDTSNEKNTIVFKLHVLCERGGPRLTVKTNELKWLPNGSE 194
GLIP++ +D + D K ++ +L C ++ K NGS+
Sbjct: 71 GLIPLVSEGIDNLTYSRDCTCDNYCSKCSVTLQLVANCATESTMNVYASDLQKMSHNGSK 130
Query: 195 L--PLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPMLDITIARLGPGQEIELEAH 252
L P+ P + P+ I +L QE+ L
Sbjct: 131 LGDPVIRDPQ-----------------------ARGPL-------ICKLRKHQELSLTCI 160
Query: 253 AVKGIGKTHAKWSPVATAWYRMLP 276
A KGI K HAKWSP A + P
Sbjct: 161 AKKGIAKEHAKWSPTAAIGFEYDP 184
>gi|149237498|ref|XP_001524626.1| DNA-directed RNA polymerase II 45 kDa polypeptide [Lodderomyces
elongisporus NRRL YB-4239]
gi|146452161|gb|EDK46417.1| DNA-directed RNA polymerase II 45 kDa polypeptide [Lodderomyces
elongisporus NRRL YB-4239]
Length = 336
Score = 83.6 bits (205), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 78/249 (31%), Positives = 110/249 (44%), Gaps = 54/249 (21%)
Query: 85 KDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRLGLIPIIV 144
KD + F L G+D ++AN+ RR ++AE+PT+AI+ V I NTSV+ DE LAHRLGLIP+
Sbjct: 16 KDRVSFVLQGVDLSMANSLRRTMLAEVPTLAIDLVEIDVNTSVLADEFLAHRLGLIPL-- 73
Query: 145 DPRLFEYMSENDTSNEKNTIVFKLHVLCERGGPRLTVKTNELKWLPNGSELPLETKPDSN 204
D+ +N +++ C+ + +V L L K DS+
Sbjct: 74 -----------DSQGIEN-LLYSRDCACDNYCSKCSVT------------LELTAKCDSD 109
Query: 205 PSSKPRTYTSFSSSQDLL--PEFSNNPIRPMLDITIARLGPGQEIELEAHAVKGIGKTHA 262
+ + +LL P + R L I +L QEI L A KGI K HA
Sbjct: 110 STMNVCASDLLKLNTELLGKPIIRDPQNRGPL---ICKLRRHQEIRLTCIAKKGIAKEHA 166
Query: 263 KWSPVATA---------------WYRM-------LPEIVLLEDVEDEDAEKLVKTCPVNV 300
KWSP A WY + E LE+ D DA+ P
Sbjct: 167 KWSPCAAVGFEYDPWNKLKHTDYWYEVDAAEEWPKSENCRLEEAPDPDAKFDYNAVPSKF 226
Query: 301 -FDIEDIGS 308
FD+E +G+
Sbjct: 227 YFDVETVGN 235
>gi|448089925|ref|XP_004196939.1| Piso0_004170 [Millerozyma farinosa CBS 7064]
gi|448094289|ref|XP_004197970.1| Piso0_004170 [Millerozyma farinosa CBS 7064]
gi|359378361|emb|CCE84620.1| Piso0_004170 [Millerozyma farinosa CBS 7064]
gi|359379392|emb|CCE83589.1| Piso0_004170 [Millerozyma farinosa CBS 7064]
Length = 308
Score = 83.6 bits (205), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 65/201 (32%), Positives = 92/201 (45%), Gaps = 28/201 (13%)
Query: 77 RVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHR 136
+V + + KD ++F L D A ANA RR+++AE+PT+AI+ V I NTSV+ DE L+HR
Sbjct: 12 QVTIRQTDKDHVDFILKDADLATANALRRVMLAEVPTLAIDLVDIDVNTSVLADEFLSHR 71
Query: 137 LGLIPIIVDPRLFEYMSENDTSNEKNTIVFKLHVLCERGGPRLTVKTNELKWLPNGSELP 196
LGLIP+ S + + C++ +VK EL
Sbjct: 72 LGLIPL--------------NSEGIENLSYSRDCTCDQYCANCSVKL----------ELT 107
Query: 197 LETKPDSNPSSKPRTYTSFSSSQDLL-PEFSNNPIRPMLDITIARLGPGQEIELEAHAVK 255
+ DS + F + L P ++ R L I +L QE+ L A K
Sbjct: 108 AKCDTDSTMNVYASDLAKFHNGSKLGDPVIRDSQQRGPL---ICKLRKHQELRLTCIAKK 164
Query: 256 GIGKTHAKWSPVATAWYRMLP 276
GI K HAKWSP A + P
Sbjct: 165 GIAKEHAKWSPCAAIGFEYDP 185
>gi|358365833|dbj|GAA82455.1| RNA polymerase II subunit 3 [Aspergillus kawachii IFO 4308]
Length = 338
Score = 83.2 bits (204), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 62/193 (32%), Positives = 92/193 (47%), Gaps = 31/193 (16%)
Query: 88 MEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRLGLIPIIVD-- 145
++F L +D A AN+ RR+++AE+PTMAI+ V + NTSV+ DE LAHRLGLIP++
Sbjct: 24 VDFKLTSVDLAFANSLRRVMLAEIPTMAIDLVEVEKNTSVLPDEFLAHRLGLIPLVSKNC 83
Query: 146 PRLFEYMSENDTSNE--KNTIVFKLHVLCERGGPRLTVKTNELKWLPNGSELPLETKPDS 203
+ EY + + + + ++ LH C G + V +L
Sbjct: 84 DQDVEYTRDCECEDHCARCSVTLSLHARC-TGDDIMRVYARDLV---------------- 126
Query: 204 NPSSKPRTYTSFSSSQDLLPEFSNNPIRPMLDITIARLGPGQEIELEAHAVKGIGKTHAK 263
S R + L PE N P+ I +L GQE+++ A KGI K HAK
Sbjct: 127 --VSGERANEWVGNPVILDPE-GNGPL-------ICKLRRGQELKMTCIAKKGIAKEHAK 176
Query: 264 WSPVATAWYRMLP 276
W P + + P
Sbjct: 177 WMPTSAIGFEYDP 189
>gi|73667627|ref|YP_303642.1| DNA-directed RNA polymerase subunit D [Methanosarcina barkeri str.
Fusaro]
gi|72394789|gb|AAZ69062.1| DNA-directed RNA polymerase, subunit D [Methanosarcina barkeri str.
Fusaro]
Length = 266
Score = 83.2 bits (204), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 69/253 (27%), Positives = 106/253 (41%), Gaps = 42/253 (16%)
Query: 75 NFRVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLA 134
V+++ L+ +F L + + AN RR +IA++PT+AIE V + NTSV+ DE LA
Sbjct: 2 TMEVDILELSDRSAKFVLSKVSTSFANGIRRAMIADVPTLAIEYVNLYENTSVLYDEQLA 61
Query: 135 HRLGLIPIIVDPRLFEYMSENDTSNEKNTIVFKLHVLCERGGPRLTVKTNELKWLPNGSE 194
RL LIP++ D + +E D + ++ + GP TV + +L
Sbjct: 62 LRLSLIPLVTDVETYVPQAECDVCGGEGCPACEVSLTLSAEGP-CTVYSRDL-------- 112
Query: 195 LPLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPMLDITIARLGPGQEIELEAHAV 254
SS P+ P P +I I L GQ++ LEA A
Sbjct: 113 ----------ISSDPKI----------------QPADP--NIPIVELKKGQKLVLEALAH 144
Query: 255 KGIGKTHAKWSPVATAWYRMLPEIVLLEDVEDEDA-EKLVKTCPVNVFDIEDIGSGKKRA 313
G G+ KW Y+ +P I +E+ DA CP + E+ G+
Sbjct: 145 MGYGRDSVKWQAGVACGYKNVPVIT----IENCDACGHCAAECPKGIIRFEESGAKVSSE 200
Query: 314 TVAQPRACTLCRE 326
V + C LC +
Sbjct: 201 DVLKCSLCKLCEQ 213
>gi|219852957|ref|YP_002467389.1| DNA-directed RNA polymerase subunit D [Methanosphaerula palustris
E1-9c]
gi|219547216|gb|ACL17666.1| RNA polymerase insert [Methanosphaerula palustris E1-9c]
Length = 273
Score = 83.2 bits (204), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 68/248 (27%), Positives = 109/248 (43%), Gaps = 47/248 (18%)
Query: 82 RLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRLGLIP 141
RL + L G+ + NA RR + +E+P +AIE + I +NTS + DE+LAHR+GL+P
Sbjct: 7 RLDNTVARYTLTGVSPSFINAIRRAMCSEVPKLAIEDIKIYDNTSALFDEMLAHRIGLVP 66
Query: 142 IIVDPRLFEYMSENDTSNEKNTIVFKLHVLCERGGPRLTVKTNELKWLPNGSELPLETKP 201
+ + L Y+S + + E C+R T+ E P
Sbjct: 67 LKTNSDL--YVSADRCTCEGAG--------CDRCSTMYTLSV----------EGP----- 101
Query: 202 DSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPMLD--ITIARLGPGQEIELEAHAVKGIGK 259
S+DL+P ++P +D I I +L GQ++ +EA A +GK
Sbjct: 102 ------------GMVYSRDLIP---SDPEAVPVDEKIPIVKLEKGQKVVIEARAEMNLGK 146
Query: 260 THAKWSPVATAWYRMLPEIVLLEDVEDEDAEKLVKTCPVNVFDIEDIGSGKKRATVAQPR 319
HAKW P Y+ P I + + + V CP +V ++ G +
Sbjct: 147 VHAKWQPTINCGYKNYPVITV--ETHCDACGTCVDQCPRDVLVLK---GGVLTVEEGKLE 201
Query: 320 ACTLCREC 327
+C+LC+ C
Sbjct: 202 SCSLCKLC 209
>gi|225557550|gb|EEH05836.1| DNA-directed RNA polymerase II polypeptide [Ajellomyces capsulatus
G186AR]
Length = 475
Score = 83.2 bits (204), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 63/195 (32%), Positives = 94/195 (48%), Gaps = 35/195 (17%)
Query: 88 MEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRLGLIPIIVDPR 147
++F L +D A AN+ RR L+AE+PT+AI+ V I +NTSV+ DE ++HRLGLIP+
Sbjct: 25 VDFRLSSVDLAFANSLRRTLLAEIPTVAIDVVEIESNTSVLPDEFISHRLGLIPL----- 79
Query: 148 LFEYMSENDTSNEKNTIVFKLHVLCERGGPRLTVKTNELKWLPNGSELPLETKPDSNPSS 207
++ N + + CE G R V T +L+ G ++
Sbjct: 80 --------NSKNCDADMEYSRDCDCEGGCARCVV-TLQLQARCTGEDI------------ 118
Query: 208 KPRTYT-SFSSSQDLLPEFSNNPIRPMLDI-----TIARLGPGQEIELEAHAVKGIGKTH 261
+ Y D E+ NP+ ++D I +L GQEI++ A KGI K H
Sbjct: 119 -MKVYARDLVVVGDRANEWVGNPV--IMDAEGKGPVICKLRRGQEIKMTCIAKKGIAKEH 175
Query: 262 AKWSPVATAWYRMLP 276
AKW+P A + P
Sbjct: 176 AKWAPTAAVGFEYDP 190
>gi|242779067|ref|XP_002479367.1| RNA polymerase II subunit 3 [Talaromyces stipitatus ATCC 10500]
gi|218722986|gb|EED22404.1| RNA polymerase II subunit 3 [Talaromyces stipitatus ATCC 10500]
Length = 353
Score = 82.8 bits (203), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 63/196 (32%), Positives = 91/196 (46%), Gaps = 36/196 (18%)
Query: 88 MEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRLGLIPIIVDPR 147
++F L +D +ANA RR +IAE+PT+AI+ V + NTSVI DE LAHRLGLIP+
Sbjct: 24 VDFKLSNVDLTLANALRRTMIAEVPTVAIDIVEVEVNTSVIPDEFLAHRLGLIPL----- 78
Query: 148 LFEYMSENDTSNEKNTIVFKLHVLCERGGPRLTVKTNELKWLPNGSELPLETKPDSNPSS 207
++ + N + + CE R +V+ L L + +
Sbjct: 79 --------NSKHCDNDMEYNRDCTCESWCSRCSVR------------LTLHARCNQADDV 118
Query: 208 KPRTYTSFSSSQDLLPEFSNNPI-------RPMLDITIARLGPGQEIELEAHAVKGIGKT 260
+ D E+ NP+ P+ IA+L GQE++L A KGI K
Sbjct: 119 MKVYSRDLVVTGDRANEWVGNPVITDPEGKGPL----IAKLIKGQELKLTCIARKGIAKE 174
Query: 261 HAKWSPVATAWYRMLP 276
HAKWSP + + P
Sbjct: 175 HAKWSPTSAVGFEYDP 190
>gi|325096255|gb|EGC49565.1| DNA-directed RNA polymerase II [Ajellomyces capsulatus H88]
Length = 475
Score = 82.8 bits (203), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 63/195 (32%), Positives = 94/195 (48%), Gaps = 35/195 (17%)
Query: 88 MEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRLGLIPIIVDPR 147
++F L +D A AN+ RR L+AE+PT+AI+ V I +NTSV+ DE ++HRLGLIP+
Sbjct: 25 VDFRLSSVDLAFANSLRRTLLAEIPTVAIDVVEIESNTSVLPDEFISHRLGLIPL----- 79
Query: 148 LFEYMSENDTSNEKNTIVFKLHVLCERGGPRLTVKTNELKWLPNGSELPLETKPDSNPSS 207
++ N + + CE G R V T +L+ G ++
Sbjct: 80 --------NSKNCDADMEYSRDCDCEGGCARCVV-TLQLQARCTGEDI------------ 118
Query: 208 KPRTYT-SFSSSQDLLPEFSNNPIRPMLDI-----TIARLGPGQEIELEAHAVKGIGKTH 261
+ Y D E+ NP+ ++D I +L GQEI++ A KGI K H
Sbjct: 119 -MKVYARDLVIVGDRANEWVGNPV--IMDAEGKGPVICKLRRGQEIKMTCIAKKGIAKEH 175
Query: 262 AKWSPVATAWYRMLP 276
AKW+P A + P
Sbjct: 176 AKWAPTAAVGFEYDP 190
>gi|302679472|ref|XP_003029418.1| hypothetical protein SCHCODRAFT_39441 [Schizophyllum commune H4-8]
gi|300103108|gb|EFI94515.1| hypothetical protein SCHCODRAFT_39441, partial [Schizophyllum
commune H4-8]
Length = 257
Score = 82.8 bits (203), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 62/203 (30%), Positives = 96/203 (47%), Gaps = 18/203 (8%)
Query: 80 VIR-LTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRLG 138
+IR L KD ++F L +D + AN+FRR+++A++PT+AI+ V NT+V+ DE +AHRLG
Sbjct: 4 IIRALEKDRVDFVLENVDLSFANSFRRVMMADIPTVAIDLVEFETNTTVLPDEFIAHRLG 63
Query: 139 LIPIIVDPRLFEYMSENDTS----NEKNTIVFKLHVLCERGGPRLTVKTNELKWLPNGSE 194
++P+I D D + + I L V C + V + L
Sbjct: 64 MVPLISDNCEEGMRYTRDCTCLSWCQYCAIELVLDVKCTEDNMSMDVTSKHLD------- 116
Query: 195 LPLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNP-IRPMLDITIARLGPGQEIELEAHA 253
++ PS + Q P P P+L IAR+ GQ +++ A
Sbjct: 117 --VQNVQPGQPSGAEGDEMASRPPQFGWPVTYREPDAEPIL---IARIRKGQALKVRCIA 171
Query: 254 VKGIGKTHAKWSPVATAWYRMLP 276
KGI K H+KWSP + + P
Sbjct: 172 KKGIAKEHSKWSPCSAVGFEYDP 194
>gi|154274952|ref|XP_001538327.1| conserved hypothetical protein [Ajellomyces capsulatus NAm1]
gi|150414767|gb|EDN10129.1| conserved hypothetical protein [Ajellomyces capsulatus NAm1]
Length = 576
Score = 82.8 bits (203), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 64/209 (30%), Positives = 98/209 (46%), Gaps = 35/209 (16%)
Query: 74 NNFRVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVL 133
N ++ + ++F L +D A AN+ RR L+AE+PT+AI+ V I +NTSV+ DE +
Sbjct: 34 NEYKTTNQQAEPHRVDFRLSSVDLAFANSLRRTLLAEIPTVAIDVVEIESNTSVLPDEFI 93
Query: 134 AHRLGLIPIIVDPRLFEYMSENDTSNEKNTIVFKLHVLCERGGPRLTVKTNELKWLPNGS 193
+HRLGLIP+ ++ N + + CE G R V T +L+ G
Sbjct: 94 SHRLGLIPL-------------NSKNCDADMEYSRDCDCEGGCARCVV-TLQLQARCTGE 139
Query: 194 ELPLETKPDSNPSSKPRTYT-SFSSSQDLLPEFSNNPIRPMLDI-----TIARLGPGQEI 247
++ + Y D E+ NP+ ++D I +L GQEI
Sbjct: 140 DI-------------MKVYARDLVIVGDRANEWVGNPV--IMDAEGKGPVICKLRRGQEI 184
Query: 248 ELEAHAVKGIGKTHAKWSPVATAWYRMLP 276
++ A KGI K HAKW+P A + P
Sbjct: 185 KMTCIAKKGIAKEHAKWAPTAAVGFEYDP 213
>gi|452003608|gb|EMD96065.1| hypothetical protein COCHEDRAFT_1088202 [Cochliobolus
heterostrophus C5]
Length = 332
Score = 82.8 bits (203), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 67/230 (29%), Positives = 108/230 (46%), Gaps = 34/230 (14%)
Query: 69 LDHFCNNFRVEVIRLTKDDMEFDLI--GIDAAIANAFRRILIAELPTMAIEKVLIANNTS 126
+D+ + ++ V L D+ I + ANA RR+++AE+PT+AI+ V + +NTS
Sbjct: 1 MDYDPDGGQINVRFLQADNQRAHFIVQNFNLETANALRRVMLAEIPTLAIDVVEVFDNTS 60
Query: 127 VIQDEVLAHRLGLIPII---VDPRLFEYMSENDTSNEKNTIVFKLHVLCERGGPRLTVKT 183
V+ DE + HRLGLIP+ VD L+ + + + ++V L+ C G + V
Sbjct: 61 VLADEFVCHRLGLIPLSSKGVDDLLYSRDCDCEGYCDNCSVVLTLNAKC-TGSEVMKVYA 119
Query: 184 NELKWLPNGSELPLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPMLDITIARLGP 243
+L +E++P ++ +P S + I +L
Sbjct: 120 RDLV---------IESRPPNDELGRPVITDSEGTGS-----------------CIVKLRR 153
Query: 244 GQEIELEAHAVKGIGKTHAKWSPVATAWYRMLPEIVL--LEDVEDEDAEK 291
GQ I ++ A KGI K HAKW+P A + P L L+ +EDAEK
Sbjct: 154 GQAINMKCIAKKGIAKEHAKWAPSAAIGFEYDPANKLHHLDYWHEEDAEK 203
>gi|451855909|gb|EMD69200.1| hypothetical protein COCSADRAFT_75709 [Cochliobolus sativus ND90Pr]
Length = 332
Score = 82.8 bits (203), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 67/230 (29%), Positives = 108/230 (46%), Gaps = 34/230 (14%)
Query: 69 LDHFCNNFRVEVIRLTKDDMEFDLI--GIDAAIANAFRRILIAELPTMAIEKVLIANNTS 126
+D+ + ++ V L D+ I + ANA RR+++AE+PT+AI+ V + +NTS
Sbjct: 1 MDYDPDGGQINVRFLQADNQRAHFIVQNFNLETANALRRVMLAEIPTLAIDVVEVFDNTS 60
Query: 127 VIQDEVLAHRLGLIPII---VDPRLFEYMSENDTSNEKNTIVFKLHVLCERGGPRLTVKT 183
V+ DE + HRLGLIP+ VD L+ + + + ++V L+ C G + V
Sbjct: 61 VLADEFVCHRLGLIPLSSKGVDDLLYSRDCDCEGYCDNCSVVLTLNAKC-TGSEVMKVYA 119
Query: 184 NELKWLPNGSELPLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPMLDITIARLGP 243
+L +E++P ++ +P S + I +L
Sbjct: 120 RDLV---------IESRPPNDELGRPVITDSEGTGS-----------------CIVKLRR 153
Query: 244 GQEIELEAHAVKGIGKTHAKWSPVATAWYRMLPEIVL--LEDVEDEDAEK 291
GQ I ++ A KGI K HAKW+P A + P L L+ +EDAEK
Sbjct: 154 GQAINMKCIAKKGIAKEHAKWAPSAAIGFEYDPANKLHHLDYWHEEDAEK 203
>gi|145231693|ref|XP_001399321.1| DNA-directed RNA polymerase II subunit RPB3 [Aspergillus niger CBS
513.88]
gi|134056224|emb|CAK37482.1| unnamed protein product [Aspergillus niger]
gi|350634315|gb|EHA22677.1| hypothetical protein ASPNIDRAFT_52135 [Aspergillus niger ATCC 1015]
Length = 338
Score = 82.8 bits (203), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 62/193 (32%), Positives = 92/193 (47%), Gaps = 31/193 (16%)
Query: 88 MEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRLGLIPIIVD-- 145
++F L +D A AN+ RR++++E+PTMAI+ V + NTSV+ DE LAHRLGLIP+I
Sbjct: 24 VDFKLTSVDLAFANSLRRVMLSEIPTMAIDLVEVEKNTSVLPDEFLAHRLGLIPLISKNC 83
Query: 146 PRLFEYMSENDTSNE--KNTIVFKLHVLCERGGPRLTVKTNELKWLPNGSELPLETKPDS 203
+ EY + + + + ++ LH C G + V +L
Sbjct: 84 DQDVEYTRDCECEDHCARCSVTLSLHARC-TGDDIMRVYARDLV---------------- 126
Query: 204 NPSSKPRTYTSFSSSQDLLPEFSNNPIRPMLDITIARLGPGQEIELEAHAVKGIGKTHAK 263
S R + L PE N P+ I +L GQE+++ A KGI K HAK
Sbjct: 127 --VSGERANEWVGNPVILDPE-GNGPL-------ICKLRRGQELKMTCIAKKGIAKEHAK 176
Query: 264 WSPVATAWYRMLP 276
W P + + P
Sbjct: 177 WMPTSAIGFEYDP 189
>gi|344232873|gb|EGV64746.1| insert subdomain of RNA polymerase alpha subunit [Candida tenuis
ATCC 10573]
Length = 305
Score = 82.4 bits (202), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 58/195 (29%), Positives = 88/195 (45%), Gaps = 32/195 (16%)
Query: 85 KDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRLGLIPII- 143
+D + F L +D A+AN+ RR ++AE+PT+AI+ V I NTSV+ DE +AHRLGLIP++
Sbjct: 20 RDHVNFVLKNVDLAVANSVRRTMMAEVPTLAIDLVEIDVNTSVLADEFIAHRLGLIPLVS 79
Query: 144 --VDPRLFEYMSENDTSNEKNTIVFKLHVLCERGGPRLTVKTNELKWLPNGSELPLETKP 201
+D + D K ++ +L C+ + + ++L NGS L
Sbjct: 80 DSIDELSYSRDCTCDQYCNKCSVKLELAAKCDTDST-MNIYASDLAKFQNGSTLGDPVIR 138
Query: 202 DSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPMLDITIARLGPGQEIELEAHAVKGIGKTH 261
D+ I +L QE+ + A KGI K H
Sbjct: 139 DAQGKGS----------------------------LICKLRKHQELRITCIAKKGIAKEH 170
Query: 262 AKWSPVATAWYRMLP 276
AKWSP + + P
Sbjct: 171 AKWSPCSAVGFEYDP 185
>gi|389741508|gb|EIM82696.1| insert subdomain of RNA polymerase alpha subunit [Stereum hirsutum
FP-91666 SS1]
Length = 411
Score = 82.4 bits (202), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 65/208 (31%), Positives = 102/208 (49%), Gaps = 23/208 (11%)
Query: 78 VEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRL 137
V + L +D + F L + A AN+ RR+++A+LPT+AI+ V I NT+V+ DE +AHRL
Sbjct: 11 VRIRTLKRDRVNFVLENAELAFANSLRRVMMADLPTIAIDMVEIETNTTVLPDEFIAHRL 70
Query: 138 GLIPIIVDPRLFEYMSEN-----DTSNEKNTIVFKLHVLCERGGPRLTVKTNELKWLPNG 192
G+IP +V E M N T+ ++ L+V C + + +N L +P+
Sbjct: 71 GMIP-LVSANCDEAMRYNRDCTCATNCSACSVKLHLNVACHDNR-TMDITSNHLDVVPH- 127
Query: 193 SELPLETKPDSNPSSKPRTYTSFSSSQDLL--PEFSNNP-IRPMLDITIARLGPGQEIEL 249
D + F D P N+P ++P+L I ++ GQE+++
Sbjct: 128 ---------DYTDYAADEQQEEFHKRIDTFGHPVGKNDPNVQPVL---ICKIRKGQELKV 175
Query: 250 EAHAVKGIGKTHAKWSPVATAWYRMLPE 277
A KGI K HAKWSP + + P
Sbjct: 176 RCIAKKGIAKEHAKWSPCSAVSFEYDPH 203
>gi|118576727|ref|YP_876470.1| DNA-directed RNA polymerase, alpha subunit/40 kD subunit
[Cenarchaeum symbiosum A]
gi|118195248|gb|ABK78166.1| DNA-directed RNA polymerase, alpha subunit/40 kD subunit
[Cenarchaeum symbiosum A]
Length = 212
Score = 82.4 bits (202), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 62/186 (33%), Positives = 91/186 (48%), Gaps = 42/186 (22%)
Query: 83 LTKDD--MEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRLGLI 140
L+KD+ + L G+ ANA RRI + +P A++ V I NTSV+ DE LAHRLGLI
Sbjct: 7 LSKDERKISIRLRGVPLQYANALRRICLNGVPVFAVDTVDIVENTSVLADEGLAHRLGLI 66
Query: 141 PIIVDPRLFEYMSENDTSNEKNTIVFKLHVLCERGGPRLTVKTNELKWLPNGSELPLETK 200
P+ D F+ ++E D + N ++ L
Sbjct: 67 PLRTDSSEFKNLAEIDPDDPINRVMLTL-------------------------------- 94
Query: 201 PDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPMLD-ITIARLGPGQEIELEAHAVKGIGK 259
DS +++ RT S +L+ E S+ ++P+ D I I L PGQ I++EA+A G G
Sbjct: 95 -DSGEAAETRTVL----SSELVSEDSS--VKPISDTIPIVELAPGQRIKVEAYARLGRGT 147
Query: 260 THAKWS 265
HAKW+
Sbjct: 148 EHAKWN 153
>gi|261199520|ref|XP_002626161.1| RNA polymerase II subunit 3 [Ajellomyces dermatitidis SLH14081]
gi|239594369|gb|EEQ76950.1| RNA polymerase II subunit 3 [Ajellomyces dermatitidis SLH14081]
gi|239615533|gb|EEQ92520.1| RNA polymerase II subunit 3 [Ajellomyces dermatitidis ER-3]
gi|327354685|gb|EGE83542.1| RNA polymerase II subunit 3 [Ajellomyces dermatitidis ATCC 18188]
Length = 346
Score = 82.4 bits (202), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 64/197 (32%), Positives = 92/197 (46%), Gaps = 39/197 (19%)
Query: 88 MEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRLGLIPIIVDPR 147
++F L +D A AN+ RR L+AE+PT+AI+ V I +NTSV+ DE +AHRLGLIP+
Sbjct: 25 VDFRLSSVDLAFANSLRRTLLAEVPTVAIDVVEIESNTSVLPDEFIAHRLGLIPL----- 79
Query: 148 LFEYMSENDTSNEKNTIVFKLHVLCERGGPRLTVKTNELKWLPNGSELPLETKPDSNPSS 207
++ N + + CE G R V T L+ G ++
Sbjct: 80 --------NSKNCDADMYYSRDCDCEGGCARCVV-TLSLQARCTGEDI------------ 118
Query: 208 KPRTYT-SFSSSQDLLPEFSNNPI-------RPMLDITIARLGPGQEIELEAHAVKGIGK 259
+ Y D E+ NP+ P+ I +L GQEI++ A KGI K
Sbjct: 119 -MKVYARDLVVVGDRANEWVGNPVITDAEGKGPL----ICKLRRGQEIKMTCVAKKGIAK 173
Query: 260 THAKWSPVATAWYRMLP 276
HAKW+P A + P
Sbjct: 174 EHAKWAPTAAVGFEYDP 190
>gi|119872211|ref|YP_930218.1| RNA polymerase, insert [Pyrobaculum islandicum DSM 4184]
gi|166229321|sp|A1RSE3.1|RPOD_PYRIL RecName: Full=DNA-directed RNA polymerase subunit D
gi|119673619|gb|ABL87875.1| DNA-directed RNA polymerase, subunit D [Pyrobaculum islandicum DSM
4184]
Length = 262
Score = 82.4 bits (202), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 64/203 (31%), Positives = 94/203 (46%), Gaps = 41/203 (20%)
Query: 94 GIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRLGLIPIIVDPRLFEYMS 153
G ++ N+ RR++I+ELP MAI+ V+I +NTSV+ DE+LAHRLGL+P+ + +
Sbjct: 20 GAYPSLVNSIRRVIISELPVMAIDYVVIVSNTSVMYDEMLAHRLGLVPLTTPLQALPPIE 79
Query: 154 ENDTSNEKNTIVFKLHVLCERGGPRLTVKTNELKWLPNGSELPLETKPDSNPSSKPRTYT 213
+ CE G L + SE + N S Y+
Sbjct: 80 D-----------------CETG-------------LVDPSECTVRLMLQINAESDKIVYS 109
Query: 214 S--FSSSQDLLPEFSNNPIRPMLDITIARLGPGQEIELEAHAVKGIGKTHAKWSPVATAW 271
S D++P + DI I +L GQ I LEA+A G K HAKW A A
Sbjct: 110 GDLVSERPDVVPVYK--------DIPIVKLVKGQSIILEAYAKLGRAKEHAKWQ-AALAS 160
Query: 272 YRMLPEIVLLEDVEDEDAEKLVK 294
Y P I +L++ E+ + + K
Sbjct: 161 YYYYPRIKVLDEKCKEECKDICK 183
>gi|406606315|emb|CCH42306.1| DNA-directed RNA polymerase II subunit [Wickerhamomyces ciferrii]
Length = 321
Score = 82.4 bits (202), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 58/201 (28%), Positives = 97/201 (48%), Gaps = 28/201 (13%)
Query: 78 VEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRL 137
+ + + D+++F L +D ++AN+ RR++I+E+PT+AI+ V I NTSV+ DE +AHRL
Sbjct: 6 INIRKTASDEVDFVLSNVDLSLANSIRRVMISEIPTLAIDSVEIETNTSVLADEFIAHRL 65
Query: 138 GLIPIIVDPRLFEYMSENDTSNEKNTIVFKLHVLCERGGPRLTVKTNELKWLPNGSELPL 197
GLIP+ S + + + + C+ + +V EL L
Sbjct: 66 GLIPL--------------QSLDVDKLSYSRDCTCDDYCNKCSV------------ELEL 99
Query: 198 ETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPMLD--ITIARLGPGQEIELEAHAVK 255
+ + D + + + F SQ+ + I + + I +L QE+ + A K
Sbjct: 100 KVRADQDSTLNVYSKDLFIVSQNTHLNIGSAIITDPEENGVLICKLRNEQELFIRCIAKK 159
Query: 256 GIGKTHAKWSPVATAWYRMLP 276
GI K HAKWSP A + P
Sbjct: 160 GIAKEHAKWSPCAAIGFEYDP 180
>gi|452987978|gb|EME87733.1| hypothetical protein MYCFIDRAFT_129897 [Pseudocercospora fijiensis
CIRAD86]
Length = 342
Score = 82.4 bits (202), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 66/208 (31%), Positives = 101/208 (48%), Gaps = 45/208 (21%)
Query: 88 MEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRLGLIPI----- 142
++F L A AN+ RR+++AE+PT+AI+ V I NNTSV+ DE LAHRLGLIP+
Sbjct: 9 IKFRLSNTSLAFANSLRRVMLAEVPTIAIDLVEIENNTSVLADEFLAHRLGLIPLSTKGV 68
Query: 143 --IVDPR---LFEY---------MSENDTSNEKNTIVFKLHVLCERGGPRLTVKTNELKW 188
++D R EY ++ + S+++N VF + E P +TN +
Sbjct: 69 DEMIDFRDCTCDEYCDNCSVVLRLNAVNRSSDQNLKVFARDLFVESAAPGGYNRTNGV-- 126
Query: 189 LPNGSELPLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPMLDITIARLGPGQEIE 248
NG+ + E P +P ++ + P+ I +L GQE+
Sbjct: 127 --NGNSVD-ELPPRGHPI--------------IMDPAGHGPL-------ICQLRRGQELR 162
Query: 249 LEAHAVKGIGKTHAKWSPVATAWYRMLP 276
++ A KGI K HAKW+P A + P
Sbjct: 163 IKCVAKKGIAKEHAKWAPTAAIAFEYDP 190
>gi|429857950|gb|ELA32787.1| RNA polymerase ii subunit 3 [Colletotrichum gloeosporioides Nara
gc5]
Length = 340
Score = 82.4 bits (202), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 63/197 (31%), Positives = 93/197 (47%), Gaps = 40/197 (20%)
Query: 88 MEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRLGLIPIIVDPR 147
+ FDL D + AN+ RR++ AE+PT+AI+ V I NTSV+ DE +AHRLGLIP+
Sbjct: 27 VNFDLSNCDLSFANSLRRVIQAEVPTIAIDLVEIEANTSVLADEFIAHRLGLIPL----- 81
Query: 148 LFEYMSENDTSNEKNTIVFKLHVLCERGGPRLTVKTNELKWLPNGSELPLETKPDSNPSS 207
S + N++++ CE+ +VK L L + S+ +
Sbjct: 82 ---------HSKDVNSLLYSRDCDCEQYCDNCSVK------------LTLHARCSSDETM 120
Query: 208 KPRTYTSFSSSQDLLPEFSNNPI--RPML------DITIARLGPGQEIELEAHAVKGIGK 259
K +S ++ F N P++ IA+L GQE++L A KGI K
Sbjct: 121 K------VYASDLIVDSFRQNGTVGNPVIMDPEGQGSLIAKLRKGQELKLSCIAKKGIAK 174
Query: 260 THAKWSPVATAWYRMLP 276
HAKW P A + P
Sbjct: 175 EHAKWMPTAAVGFEYDP 191
>gi|440635232|gb|ELR05151.1| DNA-directed RNA polymerase II subunit C [Geomyces destructans
20631-21]
Length = 342
Score = 82.0 bits (201), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 62/200 (31%), Positives = 93/200 (46%), Gaps = 46/200 (23%)
Query: 88 MEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRLGLIPIIVDPR 147
++F+L +D + AN+ RR+++AE+PTMAI+ V + NTSV+ DE LAHRLGLIP+
Sbjct: 26 VDFELSNVDLSFANSLRRVILAEVPTMAIDLVEVEANTSVLADEFLAHRLGLIPL----- 80
Query: 148 LFEYMSENDTSNEKNT--IVFKLHVLCERGGPRLTVKTNELKWLPNGSELPLETKPDSNP 205
N KN + + CE+ + +V L L K DS+
Sbjct: 81 -----------NSKNAADVNYSRDCECEQYCEQCSVT------------LFLNAKCDSDE 117
Query: 206 SSKPRT---------YTSFSSSQDLLPEFSNNPIRPMLDITIARLGPGQEIELEAHAVKG 256
K ++ + E N P+ I +L GQE++++ A KG
Sbjct: 118 IMKVYARDLVVDSLKANAWVGNPIFTDEGGNGPV-------ICKLRKGQELKMKCIAKKG 170
Query: 257 IGKTHAKWSPVATAWYRMLP 276
I K HAKW+P A + P
Sbjct: 171 IAKEHAKWAPTAAVGFEYDP 190
>gi|387593833|gb|EIJ88857.1| RNA polymerase Rpb3/Rpb11 dimerization domain-containing protein
[Nematocida parisii ERTm3]
gi|387595137|gb|EIJ92763.1| RNA polymerase Rpb3/Rpb11 dimerization domain-containing protein
[Nematocida parisii ERTm1]
Length = 254
Score = 82.0 bits (201), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 65/200 (32%), Positives = 97/200 (48%), Gaps = 39/200 (19%)
Query: 77 RVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHR 136
++E+ +T++ ++F L G +ANA RR+++ E+PT+AI+ V N +VI +E+ R
Sbjct: 3 KIEIEEVTEESIKFTLEGCTLGMANALRRVIMTEIPTLAIDIVQFDKNYTVIPEEMTTDR 62
Query: 137 LGLIPIIVDPRLFE-YMSENDTSNEKNTIVFKLHVLCERGGPRLTVKTNELKWLPNGSEL 195
LGLIPI + L E Y+ D S C+ ++ +
Sbjct: 63 LGLIPI--ESSLVEKYLYPKDCS-------------CKSFCKNCSI------------SI 95
Query: 196 PLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIR---PMLDITIARLGPGQEIELEAH 252
L+ K N P T T S+ L E +PI P I RLG Q I+ +
Sbjct: 96 VLDVK---NDGQTPMTVT----SKSLFVE-GGDPINIGDPRYPSIITRLGHKQSIKCKCI 147
Query: 253 AVKGIGKTHAKWSPVATAWY 272
AVKGIGK H+KWSPV+T +
Sbjct: 148 AVKGIGKKHSKWSPVSTVAF 167
>gi|21228260|ref|NP_634182.1| DNA-directed RNA polymerase subunit D [Methanosarcina mazei Go1]
gi|23822085|sp|Q8PV16.1|RPOD_METMA RecName: Full=DNA-directed RNA polymerase subunit D
gi|20906717|gb|AAM31854.1| DNA-directed RNA polymerase subunit D [Methanosarcina mazei Go1]
Length = 266
Score = 82.0 bits (201), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 71/254 (27%), Positives = 109/254 (42%), Gaps = 45/254 (17%)
Query: 75 NFRVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLA 134
V+++ L+ +F L + A AN RR +IA++PT+AIE V + +NTSV+ DE LA
Sbjct: 2 TMEVDILELSDRSAKFVLSRVSMAFANGVRRAMIADVPTLAIEYVNLYDNTSVLYDEQLA 61
Query: 135 HRLGLIPIIVDPRLFEYMSENDTSNEKNTIVFKLHVLCERGGPRLTVKTNELKWLPNGSE 194
RL LIP++ D + +E + + ++ + GP TV + +L
Sbjct: 62 LRLSLIPLVTDIETYMPQAECEVCGGEGCPACEVSLTLSAEGPG-TVYSRDLI------- 113
Query: 195 LPLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPMLDITIARLGPGQEIELEAHAV 254
SS P+ P P +I I L GQ++ LEA A
Sbjct: 114 -----------SSDPKI----------------QPADP--NIPIVELKKGQKLVLEAIAH 144
Query: 255 KGIGKTHAKWSPVATAWYRMLPEIVLLEDVEDEDA-EKLVKTCPVNVFDIEDIGSGKKRA 313
G G+ KW Y+ +P I +E+ DA CP + +E+ G+ R
Sbjct: 145 MGYGRDSVKWQAGVACGYKNVPVIT----IENCDACGHCAAECPKGIIRVEEAGA---RI 197
Query: 314 TVAQPRACTLCREC 327
C+LCR C
Sbjct: 198 AEDDLIKCSLCRLC 211
>gi|126273908|ref|XP_001387335.1| 45 kDa subunit of RNA polymerase II [Scheffersomyces stipitis CBS
6054]
gi|126213205|gb|EAZ63312.1| 45 kDa subunit of RNA polymerase II [Scheffersomyces stipitis CBS
6054]
Length = 315
Score = 82.0 bits (201), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 60/193 (31%), Positives = 90/193 (46%), Gaps = 28/193 (14%)
Query: 85 KDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRLGLIPIIV 144
+D + F L +D A+AN+ RR+++AE+PT+AI+ V I NTSV+ DE L+HRLGL+P++
Sbjct: 18 RDHVNFILRDVDMAMANSVRRVMLAEVPTLAIDLVEIDVNTSVLADEFLSHRLGLVPLV- 76
Query: 145 DPRLFEYMSENDTSNEKNTIVFKLHVLCERGGPRLTVKTNELKWLPNGSELPLETKPDSN 204
S + + C+ P+ +V+ EL + DS
Sbjct: 77 -------------SEGIENLTYSRDCTCDNYCPKCSVRL----------ELTAKCDTDST 113
Query: 205 PSSKPRTYTSFSSSQDLL-PEFSNNPIRPMLDITIARLGPGQEIELEAHAVKGIGKTHAK 263
+ F + L P + R L I +L QE+ L A KGI K HAK
Sbjct: 114 MNVYATDLAKFHNGSRLGDPVVRDVQKRGPL---ICKLRKHQELRLTCIAKKGIAKEHAK 170
Query: 264 WSPVATAWYRMLP 276
WSP + + P
Sbjct: 171 WSPCSAVGFEYDP 183
>gi|452210696|ref|YP_007490810.1| DNA-directed RNA polymerase subunit D [Methanosarcina mazei Tuc01]
gi|452100598|gb|AGF97538.1| DNA-directed RNA polymerase subunit D [Methanosarcina mazei Tuc01]
Length = 258
Score = 82.0 bits (201), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 71/254 (27%), Positives = 109/254 (42%), Gaps = 45/254 (17%)
Query: 75 NFRVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLA 134
V+++ L+ +F L + A AN RR +IA++PT+AIE V + +NTSV+ DE LA
Sbjct: 2 TMEVDILELSDRSAKFVLSRVSMAFANGVRRAMIADVPTLAIEYVNLYDNTSVLYDEQLA 61
Query: 135 HRLGLIPIIVDPRLFEYMSENDTSNEKNTIVFKLHVLCERGGPRLTVKTNELKWLPNGSE 194
RL LIP++ D + +E + + ++ + GP TV + +L
Sbjct: 62 LRLSLIPLVTDIETYMPQAECEVCGGEGCPACEVSLTLSAEGPG-TVYSRDLI------- 113
Query: 195 LPLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPMLDITIARLGPGQEIELEAHAV 254
SS P+ P P +I I L GQ++ LEA A
Sbjct: 114 -----------SSDPKI----------------QPADP--NIPIVELKKGQKLVLEAIAH 144
Query: 255 KGIGKTHAKWSPVATAWYRMLPEIVLLEDVEDEDA-EKLVKTCPVNVFDIEDIGSGKKRA 313
G G+ KW Y+ +P I +E+ DA CP + +E+ G+ R
Sbjct: 145 MGYGRDSVKWQAGVACGYKNVPVIT----IENCDACGHCAAECPKGIIRVEEAGA---RI 197
Query: 314 TVAQPRACTLCREC 327
C+LCR C
Sbjct: 198 AEDDLIKCSLCRLC 211
>gi|242398333|ref|YP_002993757.1| DNA-directed RNA polymerase subunit D [Thermococcus sibiricus MM
739]
gi|242264726|gb|ACS89408.1| DNA-directed RNA polymerase subunit D [Thermococcus sibiricus MM
739]
Length = 271
Score = 82.0 bits (201), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 66/212 (31%), Positives = 93/212 (43%), Gaps = 45/212 (21%)
Query: 67 LQLDHFCNNFRVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTS 126
L+ +++++ D + F L G+D A ANA RR +I E+PT AI++V N S
Sbjct: 5 LKTSFLVRKMQIKILEKRDDAIRFILEGMDIAFANALRRTIIGEVPTFAIDEVEFYENDS 64
Query: 127 VIQDEVLAHRLGLIPIIVDPRLFEYMSENDTSNEKNTIVFKLHVLCERGGPRLTVKTNEL 186
+ DE++AHRL LIP+ FE S E T+ L E GP + V + +L
Sbjct: 65 ALFDEIIAHRLSLIPLTTPFDRFELES---MELEDYTVTLSL----EAEGPAI-VYSGDL 116
Query: 187 KWLPNGSELPLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPMLDITIARLGPGQE 246
K +P KP NP +I I +L GQ
Sbjct: 117 K--------------SDDPDVKPV-----------------NP-----NIPIVKLAEGQR 140
Query: 247 IELEAHAVKGIGKTHAKWSPVATAWYRMLPEI 278
+ A+A G GK HAKW P A Y+ L E+
Sbjct: 141 LVFNAYAKMGKGKDHAKWQP-GFAHYKYLTEV 171
>gi|409096145|ref|ZP_11216169.1| DNA-directed RNA polymerase subunit D [Thermococcus zilligii AN1]
Length = 260
Score = 82.0 bits (201), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 62/208 (29%), Positives = 96/208 (46%), Gaps = 45/208 (21%)
Query: 77 RVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHR 136
+ E++ +D ++F L G+D A ANA RR ++AE+PT A+++V N S + DE++AHR
Sbjct: 4 KFEILEKREDSLKFILRGVDVAFANALRRTILAEVPTFAVDEVEFFENDSALFDEIIAHR 63
Query: 137 LGLIPIIVDPRLFEYMSENDTSNEKNTIVFKLHVLCERGGPRLTVKTNELKWLPNGSELP 196
L +IP+ Y + S E + L + E G V + +LK
Sbjct: 64 LAMIPLTTP-----YTRFSLDSLELDDYTVTLSLQAEGPG---VVYSGDLK--------- 106
Query: 197 LETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPMLDITIARLGPGQEIELEAHAVKG 256
+P KP NP +I I +L GQ++ L A+A G
Sbjct: 107 -----SDDPEIKP-----------------ANP-----NIPIVKLAEGQKLALNAYARLG 139
Query: 257 IGKTHAKWSPVATAWYRMLPEIVLLEDV 284
GK HAKW P +Y+ L I + ++V
Sbjct: 140 RGKDHAKWQP-GFVYYKYLTRIHVSKEV 166
>gi|150402492|ref|YP_001329786.1| RNA polymerase insert [Methanococcus maripaludis C7]
gi|150033522|gb|ABR65635.1| RNA polymerase insert [Methanococcus maripaludis C7]
Length = 180
Score = 82.0 bits (201), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 65/201 (32%), Positives = 90/201 (44%), Gaps = 56/201 (27%)
Query: 98 AIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRLGLIPIIVDPRLFEYMSENDT 157
+ ++A RRI+I+E+PT AIE V NTS + DEVLAHRLGLIPI
Sbjct: 10 SFSSALRRIMISEVPTYAIENVYFYENTSSMYDEVLAHRLGLIPI--------------- 54
Query: 158 SNEKNTIVFKLHVLCERGGPRLTVKTNELKWLPNGSELPLETKPDSNPSSKPRTYTSFSS 217
+G P V +E+ L E P Y+S
Sbjct: 55 ----------------KGVP---VSGDEVIVLTISKEGPC------------MVYSSDLK 83
Query: 218 SQDLLPEFSNNPIRPMLDITIARLGPGQEIELEAHAVKGIGKTHAKWSPVATAWYRMLPE 277
S+ P F N P I +L GQ++ELEA A+ G GK HAKW P + ++ +
Sbjct: 84 SESGEPAFENIP--------IVKLAEGQKLELEAEALVGTGKIHAKWQPCNAVYKQISND 135
Query: 278 IV--LLEDVEDEDAEKLVKTC 296
V +E + DAE +V++
Sbjct: 136 EVEFKIESFGNMDAEDIVRSS 156
>gi|336261545|ref|XP_003345560.1| hypothetical protein SMAC_06213 [Sordaria macrospora k-hell]
gi|380094769|emb|CCC07270.1| unnamed protein product [Sordaria macrospora k-hell]
Length = 311
Score = 82.0 bits (201), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 64/205 (31%), Positives = 102/205 (49%), Gaps = 37/205 (18%)
Query: 80 VIRLTKDD---MEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHR 136
V+++++ D ++F+L + AN+ RR+++AE+PT+AI+ V I N+SV+ DE +AHR
Sbjct: 17 VVKISQADSTRVKFELSNTELCFANSLRRVMLAEIPTIAIDLVEIEANSSVLADEFIAHR 76
Query: 137 LGLIPI---IVDPRLFEYMSENDTSNEKNTIVFKLHVLCERGGPRLTVKTNELKWLPNGS 193
LGLIP+ +D L+ + D E ++ LH C G + V +L +P G
Sbjct: 77 LGLIPLNAEGIDQLLYSRDCDCDEYCEHCSVTLNLHAKC-TGDDIMQVCARDL--VPVGD 133
Query: 194 ELPLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNP--IRPMLDITIARLGPGQEIELEA 251
+ +Q L N+P P+ I +L GQEI+L+
Sbjct: 134 RV----------------------NQVLGSPIINDPEGQGPL----ILKLRHGQEIKLQC 167
Query: 252 HAVKGIGKTHAKWSPVATAWYRMLP 276
A KGI K H+KW+P A + P
Sbjct: 168 IAKKGIAKEHSKWAPSAAIGFEYDP 192
>gi|429216770|ref|YP_007174760.1| DNA-directed RNA polymerase subunit alpha [Caldisphaera lagunensis
DSM 15908]
gi|429133299|gb|AFZ70311.1| DNA-directed RNA polymerase, alpha subunit/40 kD subunit
[Caldisphaera lagunensis DSM 15908]
Length = 280
Score = 82.0 bits (201), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 57/202 (28%), Positives = 90/202 (44%), Gaps = 48/202 (23%)
Query: 78 VEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRL 137
V+++ + + L G A NA RR++++++PTMA++ V +N + + DE++AHRL
Sbjct: 5 VDILDFNNNRITVYLEGFPIAFGNALRRLVLSDVPTMAVDYVYFYDNDTSVYDEIIAHRL 64
Query: 138 GLIPIIVDPRLFEY--------MSENDTSNEKNTIVFKLHVLCERGGPRLTVKTNELKWL 189
GL+ + D + +Y SE DT+ ++ K L G + VK ++LK
Sbjct: 65 GLLVLKSDDAIHKYGLPENCAGKSETDTNCYTQIVLEK--ELSNDSGSGIYVKASDLK-- 120
Query: 190 PNGSELPLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPML-DITIARLGPGQEIE 248
FS+ I+P D I L PGQ I
Sbjct: 121 -----------------------------------FSDASIKPAYPDTPIVYLAPGQRIH 145
Query: 249 LEAHAVKGIGKTHAKWSPVATA 270
L A+A G GK H KWSP + +
Sbjct: 146 LVAYARLGRGKEHGKWSPASAS 167
>gi|71001920|ref|XP_755641.1| RNA polymerase II subunit 3 [Aspergillus fumigatus Af293]
gi|66853279|gb|EAL93603.1| RNA polymerase II subunit 3 [Aspergillus fumigatus Af293]
gi|159129698|gb|EDP54812.1| RNA polymerase II subunit 3 [Aspergillus fumigatus A1163]
Length = 392
Score = 82.0 bits (201), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 62/201 (30%), Positives = 94/201 (46%), Gaps = 47/201 (23%)
Query: 88 MEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRLGLIPIIVD-- 145
++F L +D A AN+ RR+++AE+PTMAI+ V + NTSV+ DE LAHRLGLIP+
Sbjct: 80 VDFKLSSVDLAFANSLRRVILAEVPTMAIDLVEVEKNTSVLPDEFLAHRLGLIPLNSKNC 139
Query: 146 PRLFEYMSENDTSNE--KNTIVFKLHVLCERGGPRLTVKTNEL--------KWLPNGSEL 195
+ EY + D + + ++ LH C G + V +L +W+ +
Sbjct: 140 DQDVEYTRDCDCEDHCARCSVTLTLHARC-TGDEIMPVYARDLVVSGERANEWVGD---- 194
Query: 196 PLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPMLDITIARLGPGQEIELEAHAVK 255
P+ T P+ P+ I +L GQE+++ A K
Sbjct: 195 PVITDPE-----------------------GKGPL-------ICKLRRGQELKMTCVAKK 224
Query: 256 GIGKTHAKWSPVATAWYRMLP 276
GI K HAKW+P A + P
Sbjct: 225 GIAKEHAKWAPTAAVGFEYDP 245
>gi|255729262|ref|XP_002549556.1| DNA-directed RNA polymerase II 45 kDa polypeptide [Candida
tropicalis MYA-3404]
gi|240132625|gb|EER32182.1| DNA-directed RNA polymerase II 45 kDa polypeptide [Candida
tropicalis MYA-3404]
Length = 327
Score = 82.0 bits (201), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 63/195 (32%), Positives = 92/195 (47%), Gaps = 31/195 (15%)
Query: 85 KDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRLGLIPIIV 144
KD ++F L +D ++AN+ RR ++AE+PT++I+ V I NTSV+ DE L+HRLGLIP++
Sbjct: 18 KDHVDFILRNVDLSVANSIRRTMLAEVPTLSIDLVEIEKNTSVLADEFLSHRLGLIPLVS 77
Query: 145 DP-RLFEYMSENDTSN--EKNTIVFKLHVLCERGGPRLTVKTNELKWLPNGSELPLETKP 201
+ + Y + N K ++ +L C ++ LK GS+L
Sbjct: 78 EGIKDLTYSRDCTCDNYCTKCSVTLQLLASCTAETTMNVYASDLLKTTHTGSKLGDPVFR 137
Query: 202 DSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPMLDITIARLGPGQEIELEAHAVKGIGKTH 261
D PR + PI I +L QE+ L A KGI K H
Sbjct: 138 D------PR---------------NRGPI-------ICKLRKDQELALTCIAKKGIAKEH 169
Query: 262 AKWSPVATAWYRMLP 276
AKWSP A + P
Sbjct: 170 AKWSPCAAVGFEYDP 184
>gi|330834009|ref|YP_004408737.1| DNA-directed RNA polymerase subunit D [Metallosphaera cuprina Ar-4]
gi|329566148|gb|AEB94253.1| DNA-directed RNA polymerase, subunit D [Metallosphaera cuprina
Ar-4]
Length = 262
Score = 81.6 bits (200), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 69/236 (29%), Positives = 97/236 (41%), Gaps = 43/236 (18%)
Query: 94 GIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRLGLIPIIVDPRLFEYMS 153
G NA RR + +P MA+++V I N S + DEVLAHRLGLIP L Y
Sbjct: 19 GYPLEFVNAVRRASMIYVPVMAVDEVYIVENNSPLYDEVLAHRLGLIPFDSREALDFYRR 78
Query: 154 ENDTSNEKNTIVFKLHVLCERGGPRLTVKTNELKWLPNGSELPLETKPDSNPSSKPRTYT 213
+ + CE+ + ++ S S+ Y+
Sbjct: 79 PEECIDCAEN--------CEKCFTKAYIEV-------------------SAEESQVMVYS 111
Query: 214 SFSSSQDLLPEFSNNPIRPMLDITIARLGPGQEIELEAHAVKGIGKTHAKWSPVATAWYR 273
++D N I DI I LG Q+I LE G GK HAK++PV A R
Sbjct: 112 KDIRTED------PNVIPISKDIPIVLLGKKQKISLEMRMRLGYGKEHAKFNPVTMAIVR 165
Query: 274 MLPEIVLLEDVEDEDAEKLVKTCPVNVFDIEDIGSGKKRATVAQPRACTLCRECLR 329
P++ + + + EK + CP VF E+ V ACTLC EC++
Sbjct: 166 YKPKVKV-----NSNCEKAAEVCPYKVFSYEN-----NELKVENELACTLCEECVK 211
>gi|320583437|gb|EFW97650.1| DNA-directed RNA polymerase II subunit, putative [Ogataea
parapolymorpha DL-1]
Length = 311
Score = 81.6 bits (200), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 57/203 (28%), Positives = 97/203 (47%), Gaps = 30/203 (14%)
Query: 77 RVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHR 136
+V + + +D+++F L +D ++AN+ RR ++AE+PT+AI+ V I NTSV+ DE L+HR
Sbjct: 6 QVTIRKAGRDEVDFILGDVDLSLANSLRRTMLAEVPTLAIDLVEILVNTSVLADEFLSHR 65
Query: 137 LGLIPI---IVDPRLFEYMSENDTSNEKNTIVFKLHVLCERGGPRLTVKTNELKWLPNGS 193
LGL+P+ +D + + EK ++ +L C+ + V ++ L + +
Sbjct: 66 LGLVPLESEDIDQLKYTRDCTCEDHCEKCSVTLELRAHCDS-DETMNVYSSHLTIVSPNT 124
Query: 194 ELPLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPMLDITIARLGPGQEIELEAHA 253
L L T +P K + + +L Q++ + A
Sbjct: 125 GLNLGTPVVRDPERK--------------------------GVLLCKLKKHQQLHVRCVA 158
Query: 254 VKGIGKTHAKWSPVATAWYRMLP 276
KGI K HAKWSP A + P
Sbjct: 159 KKGIAKEHAKWSPCAAIGFEYDP 181
>gi|212533887|ref|XP_002147100.1| RNA polymerase II subunit 3 [Talaromyces marneffei ATCC 18224]
gi|210072464|gb|EEA26553.1| RNA polymerase II subunit 3 [Talaromyces marneffei ATCC 18224]
Length = 370
Score = 81.6 bits (200), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 62/196 (31%), Positives = 91/196 (46%), Gaps = 36/196 (18%)
Query: 88 MEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRLGLIPIIVDPR 147
++F L +D +ANA RR +IAE+PT+AI+ V + NTSV+ DE LAHRLGLIP+
Sbjct: 42 VDFKLSNVDLTLANALRRTMIAEVPTVAIDIVEVEVNTSVLPDEFLAHRLGLIPL----- 96
Query: 148 LFEYMSENDTSNEKNTIVFKLHVLCERGGPRLTVKTNELKWLPNGSELPLETKPDSNPSS 207
++ + N + + CE R +V+ L L + +
Sbjct: 97 --------NSKHCDNDMEYNRDCTCESWCSRCSVR------------LTLHARCNQADDV 136
Query: 208 KPRTYTSFSSSQDLLPEFSNNPI-------RPMLDITIARLGPGQEIELEAHAVKGIGKT 260
+ D E+ NP+ P+ IA+L GQE++L A KGI K
Sbjct: 137 MKVYSRDLVVTGDRANEWVGNPVITDPEGKGPL----IAKLIKGQELKLTCIARKGIAKE 192
Query: 261 HAKWSPVATAWYRMLP 276
HAKWSP + + P
Sbjct: 193 HAKWSPTSAVGFEYDP 208
>gi|212533885|ref|XP_002147099.1| RNA polymerase II subunit 3 [Talaromyces marneffei ATCC 18224]
gi|210072463|gb|EEA26552.1| RNA polymerase II subunit 3 [Talaromyces marneffei ATCC 18224]
Length = 352
Score = 81.6 bits (200), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 62/196 (31%), Positives = 91/196 (46%), Gaps = 36/196 (18%)
Query: 88 MEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRLGLIPIIVDPR 147
++F L +D +ANA RR +IAE+PT+AI+ V + NTSV+ DE LAHRLGLIP+
Sbjct: 24 VDFKLSNVDLTLANALRRTMIAEVPTVAIDIVEVEVNTSVLPDEFLAHRLGLIPL----- 78
Query: 148 LFEYMSENDTSNEKNTIVFKLHVLCERGGPRLTVKTNELKWLPNGSELPLETKPDSNPSS 207
++ + N + + CE R +V+ L L + +
Sbjct: 79 --------NSKHCDNDMEYNRDCTCESWCSRCSVR------------LTLHARCNQADDV 118
Query: 208 KPRTYTSFSSSQDLLPEFSNNPI-------RPMLDITIARLGPGQEIELEAHAVKGIGKT 260
+ D E+ NP+ P+ IA+L GQE++L A KGI K
Sbjct: 119 MKVYSRDLVVTGDRANEWVGNPVITDPEGKGPL----IAKLIKGQELKLTCIARKGIAKE 174
Query: 261 HAKWSPVATAWYRMLP 276
HAKWSP + + P
Sbjct: 175 HAKWSPTSAVGFEYDP 190
>gi|342180433|emb|CCC89910.1| unnamed protein product [Trypanosoma congolense IL3000]
Length = 392
Score = 81.6 bits (200), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 60/199 (30%), Positives = 88/199 (44%), Gaps = 29/199 (14%)
Query: 86 DDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRLGLIPIIVD 145
+ + F L +D + AN RR+L+AE+P +A+ V I NTSV+ DE++AHR+GL+P+
Sbjct: 77 ETLVFQLDEVDNSFANGLRRVLLAEVPVLAVVSVTIVQNTSVLPDEMIAHRIGLVPLY-- 134
Query: 146 PRLFEYMSENDTSNEKNTIVFKLHVLCERGGPRLTVKTNELKWLPNGSELPLETKPDSNP 205
S + + LC G T E+K L+ DS
Sbjct: 135 ------------SMKAREMQLAGDCLCGGLGCIKCQITGEMKVRCPSDRHSLQVFTDSLK 182
Query: 206 SSKPRTYTSFSSSQDLLPEFSNNPIRPMLDITIARLGPGQEIELEAHAVKGIGKTHAKWS 265
+ Y S + + + LG QE++L K I K HAK+
Sbjct: 183 IDDEQVYPVSSEER---------------GVWLLTLGRSQELDLRILIRKSIAKAHAKFM 227
Query: 266 PVATAWYRMLPEIVLLEDV 284
PV+T R PE+VL EDV
Sbjct: 228 PVSTVSMRYAPEVVLNEDV 246
>gi|440494332|gb|ELQ76725.1| DNA-directed RNA polymerase [Trachipleistophora hominis]
Length = 310
Score = 81.6 bits (200), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 59/220 (26%), Positives = 95/220 (43%), Gaps = 30/220 (13%)
Query: 101 NAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRLGLIPIIVDPRLFEYMSENDTSNE 160
NA RR ++ E+P +AI K++ ++ +EVLAHRLGL+PI D L + ++
Sbjct: 31 NALRRTILEEIPAVAISKIIFHKYVGIVPEEVLAHRLGLVPIFCDALL---LVDSAVPTR 87
Query: 161 KNTIVFKLHVLCERGGPRLTVKTNELKWLPNGSELPLETKPDSNPSSKPRTYTSFSSSQD 220
+ + ++ GG + E+ +G + +++ D
Sbjct: 88 NSCVRMRIRKRGADGGVWVRSDDIEVVHFDSGRRMC--------------SWSRAVEEDD 133
Query: 221 LLPEFSNNPIRPMLD-------------ITIARLGPGQEIELEAHAVKGIGKTHAKWSPV 267
L E + I LD + I +LGP Q ++ E +A +G K HAK+S V
Sbjct: 134 GLEEVDGDGIANALDHTYNANLPMIKPGVLITKLGPNQCLDAEMYATRGTAKEHAKYSSV 193
Query: 268 ATAWYRMLPEIVLLEDVEDEDAEKLVKTCPVNVFDIEDIG 307
+YRM P + L ++EDA L K V I G
Sbjct: 194 NICYYRMHPILTLNRSFKNEDAHLLKKRFKDGVIGIRRKG 233
>gi|336477128|ref|YP_004616269.1| RNA polymerase insert [Methanosalsum zhilinae DSM 4017]
gi|335930509|gb|AEH61050.1| RNA polymerase insert [Methanosalsum zhilinae DSM 4017]
Length = 264
Score = 81.6 bits (200), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 71/275 (25%), Positives = 118/275 (42%), Gaps = 51/275 (18%)
Query: 76 FRVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAH 135
+++++ L++ F L A AN RR ++A++PT+AI++V + NNTSV+ DE L
Sbjct: 3 MKIDILELSERTASFVLSDASVAFANGIRRAMLADVPTLAIDEVNVYNNTSVLYDEQLGL 62
Query: 136 RLGLIPIIVDPRLFEYMSENDTSNEKNTIVFKLHVLCERGGPRLTVKTNELKWLPNGSEL 195
RL LIP+ + + +Y+ +++ + E +L + GP++ + + P
Sbjct: 63 RLALIPLTAN--MDDYIPKDECNCEDVCPACELSLTLSVEGPKMVYSGDFVSADP----- 115
Query: 196 PLETKP-DSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPMLDITIARLGPGQEIELEAHAV 254
E +P DSN I I L GQ++ +EA A
Sbjct: 116 --EVRPADSN-------------------------------IPIIDLKEGQKLFIEALAH 142
Query: 255 KGIGKTHAKWSPVATAWYRMLPEIVLLEDVEDEDAEKLVKTCPVNVFDIEDIGSGKKRAT 314
G GK HAKW Y+ P IV + + ++ CP + +G +
Sbjct: 143 AGYGKEHAKWQAGVGCGYKNYP-IVSFTNC--DQCGTCIEECPKEII---KMGPAGAEIS 196
Query: 315 VAQPRACTLCRECLR-CGEEWEKRVSIRRVKDHFI 348
CTLC+ C CG VS+ + + FI
Sbjct: 197 SEDLLKCTLCKTCAEACG---INAVSVNQSESSFI 228
>gi|50418977|ref|XP_458009.1| DEHA2C07546p [Debaryomyces hansenii CBS767]
gi|49653675|emb|CAG86069.1| DEHA2C07546p [Debaryomyces hansenii CBS767]
Length = 311
Score = 81.6 bits (200), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 66/224 (29%), Positives = 105/224 (46%), Gaps = 38/224 (16%)
Query: 77 RVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHR 136
RV + K+ ++F L +D A+AN+ RR ++AE+PT+AI+ V I NTSV+ DE ++HR
Sbjct: 12 RVTIRHTDKEHVDFILKDVDLAMANSMRRTMLAEVPTLAIDLVEIEVNTSVLADEFISHR 71
Query: 137 LGLIPI---IVDPRLFEYMSENDTSNEKNTIVFKLHVLCERGGPRLTVKTNELKWLPNGS 193
LGLIP+ +D + D ++ +L C+ ++V +++L NGS
Sbjct: 72 LGLIPLNSEGIDNLSYSRDCTCDQYCANCSVKLELTAKCDT-DSTMSVYSSDLAKFHNGS 130
Query: 194 ELPLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPMLDITIARLGPGQEIELEAHA 253
+L +P ++ N+ P+ I +L QE+ + A
Sbjct: 131 KL-------GDPVAR-----------------DNHRKGPL----ICKLRKHQELRITCIA 162
Query: 254 VKGIGKTHAKWSPVAT------AWYRMLPEIVLLEDVEDEDAEK 291
KGI K HAKWSP W ++ ED DE+ K
Sbjct: 163 KKGIAKEHAKWSPCGAIGFEYDPWNKLKHTDYWYEDDADEEWPK 206
>gi|435852104|ref|YP_007313690.1| DNA-directed RNA polymerase, alpha subunit/40 kD subunit
[Methanomethylovorans hollandica DSM 15978]
gi|433662734|gb|AGB50160.1| DNA-directed RNA polymerase, alpha subunit/40 kD subunit
[Methanomethylovorans hollandica DSM 15978]
Length = 264
Score = 81.3 bits (199), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 78/255 (30%), Positives = 113/255 (44%), Gaps = 51/255 (20%)
Query: 76 FRVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAH 135
V+++ L+ +F L AA AN RR +A++PT+AI +V I NNTSV+ DE L
Sbjct: 3 MEVDILELSDRSAKFVLSNTSAAFANGIRRASLADVPTIAITEVNIYNNTSVLYDEQLGL 62
Query: 136 RLGLIPIIVDPRLFEYMSENDTSNEKNTIVFKLHVLCERGGPRLTVKTNELKWLPNGSEL 195
R+ LIP+ TSN ++ V K C P V L +E
Sbjct: 63 RMALIPL--------------TSNMED-FVPKEECSCGDFCPACQVS------LTLSAEG 101
Query: 196 PLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPML-DITIARLGPGQEIELEAHAV 254
P SQDL+ S++ ++P +I IA L GQ+I LEA A
Sbjct: 102 P-----------------KIVYSQDLVS--SDDKVQPADPNIPIADLREGQKIVLEAIAH 142
Query: 255 KGIGKTHAKWSPVATAWYRMLPEIVLLEDVEDEDAEKLVKTCPVNVFDIEDIGSGKKRAT 314
G G H++W Y+ +P++ E + V CPV++ I G + A
Sbjct: 143 MGYGNKHSRWQAGVACGYKNMPKV---EFSGCDLCGACVTECPVDI-----IKMGTESAE 194
Query: 315 VAQPRA--CTLCREC 327
++Q CTLCR C
Sbjct: 195 ISQEDMLKCTLCRLC 209
>gi|119481479|ref|XP_001260768.1| RNA polymerase II subunit 3 [Neosartorya fischeri NRRL 181]
gi|119408922|gb|EAW18871.1| RNA polymerase II subunit 3 [Neosartorya fischeri NRRL 181]
Length = 336
Score = 81.3 bits (199), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 62/196 (31%), Positives = 91/196 (46%), Gaps = 37/196 (18%)
Query: 88 MEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRLGLIPIIVDPR 147
++F L +D A AN+ RR+++AE+PTMAI+ V + NTSV+ DE LAHRLGLIP+
Sbjct: 24 VDFKLSSVDLAFANSLRRVILAEVPTMAIDLVEVEKNTSVLPDEFLAHRLGLIPL----- 78
Query: 148 LFEYMSENDTSNEKNTIVFKLHVLCERGGPRLTVKTNELKWLPNGSELPLETKPDSNPSS 207
++ N + + CE R +V T L G E+
Sbjct: 79 --------NSKNCDQDVEYTRDCECEDHCARCSV-TLTLHARCTGDEI------------ 117
Query: 208 KPRTYTSFSSSQDLLPEFSNNPI-------RPMLDITIARLGPGQEIELEAHAVKGIGKT 260
P S + E+ +P+ P+ I +L GQE+++ A KGI K
Sbjct: 118 MPVYARDLVVSGERANEWVGDPVITDPEGKGPL----ICKLRRGQELKMTCVAKKGIAKE 173
Query: 261 HAKWSPVATAWYRMLP 276
HAKW+P A + P
Sbjct: 174 HAKWAPTAAVGFEYDP 189
>gi|354547085|emb|CCE43818.1| hypothetical protein CPAR2_500440 [Candida parapsilosis]
Length = 317
Score = 81.3 bits (199), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 65/199 (32%), Positives = 95/199 (47%), Gaps = 42/199 (21%)
Query: 86 DDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRLGLIPIIVD 145
D ++F L +D ++ANA RR ++AE+PT+AI+ V I NTSV+ DE LAHRLGLIP++
Sbjct: 17 DRVDFVLGNVDLSVANALRRTMLAEVPTLAIDLVEIDVNTSVLADEFLAHRLGLIPLV-- 74
Query: 146 PRLFEYMSENDTSNEKNTIVFKLHVLCERGGPRLTVKTNELKWLPNGSELPLETKPDSNP 205
SEN + + C+ P+ +V L L K D++
Sbjct: 75 -------SEN-----IENLKYSRDCTCDNYCPQCSVT------------LELTAKCDTDS 110
Query: 206 SS--------KPRTYTSFSSSQDLLPEFSNNPIRPMLDITIARLGPGQEIELEAHAVKGI 257
+ KP + S + P + ++ R + I +L QE+ L A KGI
Sbjct: 111 TMNVYASDLFKPPSPYSLGT-----PVYRDHMERGPI---ICKLRKHQELRLTCIAKKGI 162
Query: 258 GKTHAKWSPVATAWYRMLP 276
K HAKWSP A + P
Sbjct: 163 AKEHAKWSPCAAIGFEYDP 181
>gi|333910738|ref|YP_004484471.1| DNA-directed RNA polymerase [Methanotorris igneus Kol 5]
gi|333751327|gb|AEF96406.1| DNA-directed RNA polymerase [Methanotorris igneus Kol 5]
Length = 195
Score = 81.3 bits (199), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 68/201 (33%), Positives = 94/201 (46%), Gaps = 56/201 (27%)
Query: 98 AIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRLGLIPIIVDPRLFEYMSENDT 157
+ +NA RRI+I+E+PT AIE V + NTS + DE+LAHRLGLIPI P +SE++
Sbjct: 25 SFSNAIRRIMISEVPTYAIENVYVHENTSSMHDEILAHRLGLIPIKGKP-----ISEDE- 78
Query: 158 SNEKNTIVFKLHVLCERGGPRLTVKTNELKWLPNGSELPLETKPDSNPSSKPRTYTSFSS 217
I F L + GP TV +++LK
Sbjct: 79 -----VITFTLV----KEGP-CTVYSSDLK------------------------------ 98
Query: 218 SQDLLPEFSNNPIRPMLDITIARLGPGQEIELEAHAVKGIGKTHAKWSPVATAWYRMLPE 277
S++ F N P I +L GQ IEL A GIGK HAKW P + ++ +
Sbjct: 99 SENGEVAFKNIP--------IIKLKEGQRIELVCEATVGIGKVHAKWQPCNATYKQIDDD 150
Query: 278 IV--LLEDVEDEDAEKLVKTC 296
V L+E + D E ++KT
Sbjct: 151 EVEFLVESFGNMDPEDILKTA 171
>gi|47204376|emb|CAG13794.1| unnamed protein product [Tetraodon nigroviridis]
Length = 128
Score = 80.9 bits (198), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 48/91 (52%), Positives = 60/91 (65%), Gaps = 2/91 (2%)
Query: 258 GKTHAKWSPVATAWYRMLPEIVLLEDVEDEDAEKLVKTCPVNVFDIEDIGSGKKRATVAQ 317
GK HAK+SPVATA YR+LPEI LLE VE E AE+L + V D+ED +G+K A VA
Sbjct: 1 GKDHAKYSPVATASYRLLPEITLLEPVEGEKAERLQRCFLPGVIDLED-PNGRKVARVAN 59
Query: 318 PRACTLCRECLRCGEEWEKRVSIRRVKDHFI 348
R T RE LR ++ +K V + R +DHFI
Sbjct: 60 SRLDTCSREVLR-HDDLKKVVKLGRRRDHFI 89
>gi|134045316|ref|YP_001096802.1| DNA-directed RNA polymerase subunit D [Methanococcus maripaludis
C5]
gi|132662941|gb|ABO34587.1| DNA-directed RNA polymerase, subunit D [Methanococcus maripaludis
C5]
Length = 180
Score = 80.9 bits (198), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 63/201 (31%), Positives = 90/201 (44%), Gaps = 56/201 (27%)
Query: 98 AIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRLGLIPIIVDPRLFEYMSENDT 157
+ ++A RRI+I+E+PT AIE V NTS + DEVLAHRLGL+PI
Sbjct: 10 SFSSALRRIMISEVPTYAIENVYFYENTSSMYDEVLAHRLGLVPI--------------- 54
Query: 158 SNEKNTIVFKLHVLCERGGPRLTVKTNELKWLPNGSELPLETKPDSNPSSKPRTYTSFSS 217
+G P V +E+ L E P Y+S
Sbjct: 55 ----------------KGVP---VSGDEVIVLTISKEGPC------------MVYSSDIK 83
Query: 218 SQDLLPEFSNNPIRPMLDITIARLGPGQEIELEAHAVKGIGKTHAKWSPVATAWYRMLPE 277
S+ P F N P I +L GQ++ELEA A+ G GK HAKW P + ++ +
Sbjct: 84 SESGEPAFENIP--------IVKLAEGQKLELEAEALVGTGKIHAKWQPCNAVYKQISND 135
Query: 278 IV--LLEDVEDEDAEKLVKTC 296
V +E + DAE ++++
Sbjct: 136 EVEFKIESFGNMDAEDIIRSS 156
>gi|121715950|ref|XP_001275584.1| RNA polymerase II subunit 3 [Aspergillus clavatus NRRL 1]
gi|119403741|gb|EAW14158.1| RNA polymerase II subunit 3 [Aspergillus clavatus NRRL 1]
Length = 333
Score = 80.9 bits (198), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 61/201 (30%), Positives = 92/201 (45%), Gaps = 47/201 (23%)
Query: 88 MEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRLGLIPIIVD-- 145
++F L +D A AN+ RR+++AE+PTMAI+ V + NTSV+ DE LAHRLGLIP+
Sbjct: 24 VDFKLSSVDLAFANSLRRVILAEVPTMAIDLVEVERNTSVLPDEFLAHRLGLIPLNSKNC 83
Query: 146 PRLFEYMSENDTSNE--KNTIVFKLHVLCERGGPRLTVKTNEL--------KWLPNGSEL 195
+ EY + D + + ++ LH C G + V +L +W+
Sbjct: 84 DQDVEYTRDCDCEDRCARCSVTLTLHARC-TGDEIMPVYARDLVVTGERANEWVGT---- 138
Query: 196 PLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPMLDITIARLGPGQEIELEAHAVK 255
P+ T P+ S I +L GQE+++ A K
Sbjct: 139 PVLTDPEGKGS------------------------------LICKLRRGQELKMTCIAKK 168
Query: 256 GIGKTHAKWSPVATAWYRMLP 276
G+ K HAKW+P A + P
Sbjct: 169 GMAKEHAKWAPTAAVGFEYDP 189
>gi|171186411|ref|YP_001795330.1| RNA polymerase insert [Pyrobaculum neutrophilum V24Sta]
gi|229564213|sp|B1YC30.1|RPOD_THENV RecName: Full=DNA-directed RNA polymerase subunit D
gi|170935623|gb|ACB40884.1| RNA polymerase insert [Pyrobaculum neutrophilum V24Sta]
Length = 262
Score = 80.5 bits (197), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 56/182 (30%), Positives = 85/182 (46%), Gaps = 42/182 (23%)
Query: 94 GIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRLGLIPIIVDPRLFEYMS 153
G ++ N+ RR++I+ELP MAI+ V++ NNTSV+ DE+LAHRLGLIP+ + +
Sbjct: 20 GAYPSLVNSLRRVIISELPVMAIDTVIVVNNTSVMYDEMLAHRLGLIPLTTPLQSLPPIE 79
Query: 154 ENDTS---NEKNTIVFKLHVLCERGGPRLTVKTNELKWLPNGSELPLETKPDSNPSSKPR 210
+ ++ + T+ F L V +TV + +L + +PD P K
Sbjct: 80 DCESGLADPSECTVRFTLQV---NADGEVTVYSGDL----------VSERPDVVPVHK-- 124
Query: 211 TYTSFSSSQDLLPEFSNNPIRPMLDITIARLGPGQEIELEAHAVKGIGKTHAKWSPVATA 270
DI I +L GQ I LEA+A G + HAKW +
Sbjct: 125 ------------------------DIPIVKLVKGQSIVLEAYAKLGRARGHAKWQAALAS 160
Query: 271 WY 272
+Y
Sbjct: 161 YY 162
>gi|19074310|ref|NP_585816.1| DNA-DIRECTED RNA POLYMERASE II THIRD CHAIN [Encephalitozoon
cuniculi GB-M1]
gi|19068952|emb|CAD25420.1| DNA-DIRECTED RNA POLYMERASE II THIRD CHAIN [Encephalitozoon
cuniculi GB-M1]
gi|449329459|gb|AGE95731.1| DNA-directed RNA polymerase II third chain [Encephalitozoon
cuniculi]
Length = 240
Score = 80.5 bits (197), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 62/188 (32%), Positives = 89/188 (47%), Gaps = 41/188 (21%)
Query: 83 LTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRLGLIPI 142
LT + + F L ANA RRILI+E+PT+AI+ V I N +V+ DEVLAHRLGLIP
Sbjct: 9 LTPEHIRFTLSNTTVGYANALRRILISEVPTIAIDMVEIERNNTVLPDEVLAHRLGLIP- 67
Query: 143 IVDPRLFEYMSENDTSN--EKNTIVFKLHVLCERGGPRLTVKTNELKWLPNGSELPLETK 200
I R +Y E S + ++VF++ V+ R TV T ++
Sbjct: 68 IYSKRELKYKEECSCSGFCSECSVVFEIDVVHTDDTLR-TVSTRDI-------------- 112
Query: 201 PDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPMLDITIARLGPGQEIELEAHAVKGIGKT 260
+D++ + P+ I +L Q ++ KG+GKT
Sbjct: 113 --------------VCDEEDVI--IKSGPV-------ITKLARDQGLKARCIGRKGVGKT 149
Query: 261 HAKWSPVA 268
HAKWSPV+
Sbjct: 150 HAKWSPVS 157
>gi|374635695|ref|ZP_09707289.1| DNA-directed RNA polymerase [Methanotorris formicicus Mc-S-70]
gi|373561548|gb|EHP87781.1| DNA-directed RNA polymerase [Methanotorris formicicus Mc-S-70]
Length = 194
Score = 80.5 bits (197), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 68/200 (34%), Positives = 91/200 (45%), Gaps = 56/200 (28%)
Query: 98 AIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRLGLIPIIVDPRLFEYMSENDT 157
+ +NA RRI+I+E+PT AIE V + NTS + DE+LAHRLGLIPI P
Sbjct: 25 SFSNAIRRIMISEVPTYAIENVYVHENTSSMHDEILAHRLGLIPIKGKP----------- 73
Query: 158 SNEKNTIVFKLHVLCERGGPRLTVKTNELKWLPNGSELPLETKPDSNPSSKPRTYTSFSS 217
+E I F L + GP TV +++LK NG +
Sbjct: 74 VSEDEVITFTLI----KEGP-CTVYSSDLKS-ENGEVV---------------------- 105
Query: 218 SQDLLPEFSNNPIRPMLDITIARLGPGQEIELEAHAVKGIGKTHAKWSPVATAWYRMLPE 277
F N P I +L GQ IEL A GIGK HAKW P + ++ +
Sbjct: 106 -------FKNIP--------IIKLREGQRIELVCEATVGIGKIHAKWQPCNATYKQISDD 150
Query: 278 IV--LLEDVEDEDAEKLVKT 295
V L+E + D E ++KT
Sbjct: 151 EVEFLVESFGNMDPEDILKT 170
>gi|449298899|gb|EMC94913.1| hypothetical protein BAUCODRAFT_123413 [Baudoinia compniacensis
UAMH 10762]
Length = 389
Score = 80.5 bits (197), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 71/230 (30%), Positives = 108/230 (46%), Gaps = 26/230 (11%)
Query: 77 RVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHR 136
RV + + F L A+AN+ RR ++AE+PT+AI+ V I +NTSV+ DE LAHR
Sbjct: 18 RVTIRSANDTTISFVLQHTSLALANSLRRTILAEIPTIAIDLVEIESNTSVLPDEFLAHR 77
Query: 137 LGLIPII---VDPRLFEYMSENDTSNEKNTIVFKLHVLCERGGPRLTVKTNELKWLPNGS 193
+GLIP+ V+ + D + ++V +L+V L V +L
Sbjct: 78 MGLIPLSTRDVEDMFYTRDCACDEFCDNCSVVLQLNVANRNLDHNLKVFARDLTV----- 132
Query: 194 ELPLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNN-PIR--PMLDITIARLGP------- 243
T+ D P + PR+ ++ L + P R P+L + + GP
Sbjct: 133 -----TRVDGTPITDPRSTAHLTNGAAGLHSHAEELPPRGFPIL-MDPEQKGPLLCSLRK 186
Query: 244 GQEIELEAHAVKGIGKTHAKWSPVATAWYRMLPEIVLLEDV--EDEDAEK 291
GQ+++L A KGI K HAKW+P A + P L +EDA+K
Sbjct: 187 GQDLKLRCIAKKGIAKEHAKWAPTAAIGFEYDPHNKLRHTTLWHEEDAKK 236
>gi|159905734|ref|YP_001549396.1| RNA polymerase insert [Methanococcus maripaludis C6]
gi|159887227|gb|ABX02164.1| RNA polymerase insert [Methanococcus maripaludis C6]
Length = 180
Score = 80.5 bits (197), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 64/201 (31%), Positives = 89/201 (44%), Gaps = 56/201 (27%)
Query: 98 AIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRLGLIPIIVDPRLFEYMSENDT 157
+ ++A RRI+I+E+PT AIE V NTS + DEVLAHRLGLIPI
Sbjct: 10 SFSSALRRIMISEVPTYAIENVYFYENTSSMYDEVLAHRLGLIPI--------------- 54
Query: 158 SNEKNTIVFKLHVLCERGGPRLTVKTNELKWLPNGSELPLETKPDSNPSSKPRTYTSFSS 217
+G P V +E+ L E P Y+S
Sbjct: 55 ----------------KGVP---VSGDEVIVLTISKEGPC------------MVYSSDIK 83
Query: 218 SQDLLPEFSNNPIRPMLDITIARLGPGQEIELEAHAVKGIGKTHAKWSPVATAWYRMLPE 277
S+ P F N P I +L GQ++ELE A+ G GK HAKW P + ++ +
Sbjct: 84 SESGEPAFENIP--------IVKLAEGQKLELETEALVGTGKIHAKWQPCNAVYKQISND 135
Query: 278 IV--LLEDVEDEDAEKLVKTC 296
V +E + DAE +V++
Sbjct: 136 EVEFKIESFGNMDAEDIVRSS 156
>gi|14520746|ref|NP_126221.1| DNA-directed RNA polymerase subunit D [Pyrococcus abyssi GE5]
gi|13124531|sp|Q9V198.1|RPOD_PYRAB RecName: Full=DNA-directed RNA polymerase subunit D
gi|5457962|emb|CAB49452.1| rpoD DNA-directed RNA polymerase, subunit D [Pyrococcus abyssi GE5]
gi|380741285|tpe|CCE69919.1| TPA: DNA-directed RNA polymerase subunit D [Pyrococcus abyssi GE5]
Length = 259
Score = 80.1 bits (196), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 66/218 (30%), Positives = 100/218 (45%), Gaps = 46/218 (21%)
Query: 78 VEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRL 137
+++++ T D + F L G+D A ANA RR ++ E+PT A+++V N S + DE++AHRL
Sbjct: 4 IKILKKTDDSITFILEGVDVAFANALRRTILGEVPTFAVDEVEFYENDSALFDEIIAHRL 63
Query: 138 GLIPIIVDPRLFEYMSENDTSNEKNTIVFKLHVLCERGGPRLTVKTNELKWLPNGSELPL 197
+IP+ FE + + T+ L E GP + V + +LK
Sbjct: 64 AMIPLKTPVDRFEL---DALELDDYTVTLSL----EAEGPGI-VYSGDLK---------- 105
Query: 198 ETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPMLDITIARLGPGQEIELEAHAVKGI 257
PD P+ NP DI I +L GQ + A A G
Sbjct: 106 SDDPDVKPA---------------------NP-----DIPIVKLAKGQRLVFNAFAKLGR 139
Query: 258 GKTHAKWSPVATAWYRMLPEIVLLEDVED-EDAEKLVK 294
GK HAKW P T +Y+ I + +++E E +KL K
Sbjct: 140 GKDHAKWQPGFT-YYKYFTRIHISKEIEGWEKLKKLAK 176
>gi|403414765|emb|CCM01465.1| predicted protein [Fibroporia radiculosa]
Length = 387
Score = 80.1 bits (196), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 61/199 (30%), Positives = 99/199 (49%), Gaps = 19/199 (9%)
Query: 78 VEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRL 137
V + L KD + F L +D A AN+FRR+++A++PT+A++ V + NT+V+ DE +AHRL
Sbjct: 9 VRIRELKKDQVNFVLENVDLAFANSFRRVMMADIPTVAVDMVEVQTNTTVLPDEFIAHRL 68
Query: 138 GLIPIIVDPRLFEYMSENDTSNEKNTIVFKLHVLCERGGPRLTVKTNELKWLPNGSELPL 197
G+IP++ S N + T +L V+ E G +T+ +G
Sbjct: 69 GMIPLV---------SHNCDQGMRYT---RLSVMVEEG---VTMDVTSAHLDVSGPHRGQ 113
Query: 198 ETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPMLDITIARLGPGQEIELEAHAVKGI 257
E N ++ + S P ++P P + I ++ GQE+++ A KGI
Sbjct: 114 EQH--WNEEAEGNEEMAKRGSNFGHPVGKDDPNVP--PVLICKIRKGQELKVRCIAKKGI 169
Query: 258 GKTHAKWSPVATAWYRMLP 276
K HAKWSP + + P
Sbjct: 170 AKEHAKWSPCSAVAFEYDP 188
>gi|83769667|dbj|BAE59802.1| unnamed protein product [Aspergillus oryzae RIB40]
gi|391869849|gb|EIT79042.1| RNA polymerase [Aspergillus oryzae 3.042]
Length = 342
Score = 80.1 bits (196), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 62/201 (30%), Positives = 93/201 (46%), Gaps = 47/201 (23%)
Query: 88 MEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRLGLIPIIVD-- 145
++F L +D A AN+ RR ++AE+PT+AI+ V + NTSV+ DE LAHRLGLIP+
Sbjct: 24 VDFKLSSVDLAFANSLRRAMLAEVPTIAIDLVEVEKNTSVLPDEFLAHRLGLIPLNSKNC 83
Query: 146 PRLFEYMSENDTSNE--KNTIVFKLHVLCERGGPRLTVKTNEL--------KWLPNGSEL 195
+ EY + + + + ++ LH C G + V +L +W+ N
Sbjct: 84 DQDVEYTRDCECEDHCARCSVTLTLHARC-TGDDIMRVYARDLVVSGERANEWVGN---- 138
Query: 196 PLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPMLDITIARLGPGQEIELEAHAVK 255
P+ T P+ N P+ I +L GQE+++ A K
Sbjct: 139 PVITDPE-----------------------GNGPL-------ICKLRRGQELKMTCIAKK 168
Query: 256 GIGKTHAKWSPVATAWYRMLP 276
GI K HAKW P A + P
Sbjct: 169 GIAKEHAKWMPTAAVGFEYDP 189
>gi|238496743|ref|XP_002379607.1| RNA polymerase II subunit 3 [Aspergillus flavus NRRL3357]
gi|317146984|ref|XP_001821804.2| DNA-directed RNA polymerase II subunit RPB3 [Aspergillus oryzae
RIB40]
gi|220694487|gb|EED50831.1| RNA polymerase II subunit 3 [Aspergillus flavus NRRL3357]
Length = 338
Score = 80.1 bits (196), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 62/201 (30%), Positives = 93/201 (46%), Gaps = 47/201 (23%)
Query: 88 MEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRLGLIPIIVD-- 145
++F L +D A AN+ RR ++AE+PT+AI+ V + NTSV+ DE LAHRLGLIP+
Sbjct: 24 VDFKLSSVDLAFANSLRRAMLAEVPTIAIDLVEVEKNTSVLPDEFLAHRLGLIPLNSKNC 83
Query: 146 PRLFEYMSENDTSNE--KNTIVFKLHVLCERGGPRLTVKTNEL--------KWLPNGSEL 195
+ EY + + + + ++ LH C G + V +L +W+ N
Sbjct: 84 DQDVEYTRDCECEDHCARCSVTLTLHARC-TGDDIMRVYARDLVVSGERANEWVGN---- 138
Query: 196 PLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPMLDITIARLGPGQEIELEAHAVK 255
P+ T P+ N P+ I +L GQE+++ A K
Sbjct: 139 PVITDPE-----------------------GNGPL-------ICKLRRGQELKMTCIAKK 168
Query: 256 GIGKTHAKWSPVATAWYRMLP 276
GI K HAKW P A + P
Sbjct: 169 GIAKEHAKWMPTAAVGFEYDP 189
>gi|159041731|ref|YP_001540983.1| RNA polymerase insert [Caldivirga maquilingensis IC-167]
gi|157920566|gb|ABW01993.1| RNA polymerase insert [Caldivirga maquilingensis IC-167]
Length = 305
Score = 79.7 bits (195), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 63/247 (25%), Positives = 112/247 (45%), Gaps = 46/247 (18%)
Query: 78 VEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRL 137
V+V++ + D ++F + G+ ++ N+ RRILI ++P +AI++V++ +NT+V+ DEVLAHRL
Sbjct: 7 VKVLQYSDDYLKFVVEGVKPSLINSLRRILITDVPVLAIDRVIVLDNTTVMYDEVLAHRL 66
Query: 138 GLIPIIVDPRLFEYMSENDTSNEKNTIVFKLHVLCERGGPRLTVKTNELKWLPNGSELPL 197
+IP+ + + E + E P L +L N + +
Sbjct: 67 SMIPLKTNLEKLPKIEECED---------------ELVDPSLCQVRYQLSIKANDQVVSV 111
Query: 198 ETKPDSNPSSKPRTYTSFSSSQDLLPEFSN-NPIRPMLDITIARLGPGQEIELEAHAVKG 256
K DL+P+ + P+ P D I ++ GQ + +EA+A G
Sbjct: 112 YAK-------------------DLIPDDPDFAPVYP--DTLIVKMSKGQVLSIEAYAKLG 150
Query: 257 IGKTHAKWSPVATAWYRMLPEIVLLEDVEDEDAEKLVKTCPVNVFDIEDIGSGKKRATVA 316
+ HAKW ++Y P++ LL + DE +++C + I +
Sbjct: 151 RARDHAKWQACLASYY-YYPKVQLL-NPRDERCAACLESC-------KGITRKNDEYVIT 201
Query: 317 QPRACTL 323
P CT
Sbjct: 202 DPLQCTF 208
>gi|425774142|gb|EKV12459.1| RNA polymerase II subunit 3 [Penicillium digitatum PHI26]
gi|425778395|gb|EKV16523.1| RNA polymerase II subunit 3 [Penicillium digitatum Pd1]
Length = 335
Score = 79.7 bits (195), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 60/206 (29%), Positives = 92/206 (44%), Gaps = 58/206 (28%)
Query: 88 MEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRLGLIPI---IV 144
++F L +D A AN+ RR ++AE+PT+A++ + I +NTSV+ DE LAHRLG+IP+
Sbjct: 24 VDFRLTAVDLAFANSLRRTILAEVPTLALDLIEIESNTSVLPDEFLAHRLGMIPLNSYNC 83
Query: 145 DPRLFEYMSENDTSNE--KNTIVFKLHVLCERG------------GPRLTVKTNELKWLP 190
D L +Y + D + + ++ LH C G G R+ K +
Sbjct: 84 DQDL-DYTRDCDCEDHCVRCSVTLSLHARCGSGIMSVYARDLIVVGERINDKIGD----- 137
Query: 191 NGSELPLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPMLDITIARLGPGQEIELE 250
P+ T P+ + P+ I +L GQEI++
Sbjct: 138 -----PVTTDPE-----------------------NKGPL-------ICKLRKGQEIKMT 162
Query: 251 AHAVKGIGKTHAKWSPVATAWYRMLP 276
A KG K HAKW+P A + P
Sbjct: 163 CLAKKGTAKEHAKWAPTAAVGFEYDP 188
>gi|115384192|ref|XP_001208643.1| DNA-directed RNA polymerase II 45 kDa polypeptide [Aspergillus
terreus NIH2624]
gi|114196335|gb|EAU38035.1| DNA-directed RNA polymerase II 45 kDa polypeptide [Aspergillus
terreus NIH2624]
Length = 331
Score = 79.7 bits (195), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 59/193 (30%), Positives = 92/193 (47%), Gaps = 31/193 (16%)
Query: 88 MEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRLGLIPIIVD-- 145
++F L +D A AN+ RR ++AE+PT+AI+ V + NTSV+ DE LAHRLGLIP+
Sbjct: 25 VDFKLSSVDLAFANSLRRTMLAEVPTVAIDLVEVEKNTSVLPDEFLAHRLGLIPLNSKNC 84
Query: 146 PRLFEYMSENDTSNE--KNTIVFKLHVLCERGGPRLTVKTNELKWLPNGSELPLETKPDS 203
+ EY + + + + ++ +LH C G + V +L + + T +
Sbjct: 85 DQDLEYTRDCECEDHCARCSVTLQLHARC-TGDDIMRVYARDLAVAGERANDWVGTPVIT 143
Query: 204 NPSSKPRTYTSFSSSQDLLPEFSNNPIRPMLDITIARLGPGQEIELEAHAVKGIGKTHAK 263
+P K P+ I +L GQE+++ A KGI K HAK
Sbjct: 144 DPEGK-------------------GPL-------ICKLRRGQELKMTCIAKKGIAKEHAK 177
Query: 264 WSPVATAWYRMLP 276
W+P A + P
Sbjct: 178 WAPTAAIGFEYDP 190
>gi|449692874|ref|XP_004213207.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB3-like,
partial [Hydra magnipapillata]
Length = 131
Score = 79.7 bits (195), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 41/100 (41%), Positives = 65/100 (65%), Gaps = 4/100 (4%)
Query: 77 RVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHR 136
RV+++ T D+++F L D ++AN+ RRI IAE+PT+AI+ V I NNTSV+ DE +AHR
Sbjct: 8 RVKILEWTDDNLKFILENTDLSVANSLRRIFIAEVPTIAIDWVQIENNTSVLHDEFIAHR 67
Query: 137 LGLIPIIVDPRLFEYMSENDTS----NEKNTIVFKLHVLC 172
+GLIP+ D ++ + D + ++ ++ F L V C
Sbjct: 68 IGLIPLTSDEKVDKMCYSRDCTCSEFCDECSVKFTLDVKC 107
>gi|124027415|ref|YP_001012735.1| DNA-directed RNA polymerase subunit D [Hyperthermus butylicus DSM
5456]
gi|123978109|gb|ABM80390.1| DNA-directed RNA polymerase subunit D [Hyperthermus butylicus DSM
5456]
Length = 281
Score = 79.7 bits (195), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 68/231 (29%), Positives = 102/231 (44%), Gaps = 37/231 (16%)
Query: 83 LTKDDMEFDLI--GIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRLGLI 140
L KD + L G + NA RR +++P MA++ V + N +V+ DE++AHRLGLI
Sbjct: 7 LDKDRLTIRLYVEGFGLPLVNAIRRAAYSDVPVMAVDVVEVFENNTVLYDEIIAHRLGLI 66
Query: 141 PIIVDPRLFEYMSENDTSNEKNTIVFKLHVLCERGGPRLTVKTNELKWLPNGSELPLETK 200
P+ L +Y + E G P V L +ET
Sbjct: 67 PLTSKEALQKYKRPEECEK------------AELGDPSCYVVLR----------LEVETG 104
Query: 201 PDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPMLD-ITIARLGPGQEIELEAHAVKGIGK 259
P S DL E S+ +RP+ D + I + P Q + L+A+A G G+
Sbjct: 105 PREE---------RIVYSGDL--ETSDPDVRPVYDNMPIVVMAPDQRLRLQAYARLGYGR 153
Query: 260 THAKWSPVATAWYRMLPEIVL-LEDVEDEDAEKLVKTCPVNVFDIEDIGSG 309
HAKW PV+ A +R LP + L+++ DE + P I ++ SG
Sbjct: 154 EHAKWMPVSVAAHRYLPILEFNLDEMSDECIRCIESGYPELAAKIREMRSG 204
>gi|410670316|ref|YP_006922687.1| DNA-directed RNA polymerase subunit D [Methanolobus psychrophilus
R15]
gi|409169444|gb|AFV23319.1| DNA-directed RNA polymerase subunit D [Methanolobus psychrophilus
R15]
Length = 265
Score = 79.7 bits (195), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 68/254 (26%), Positives = 104/254 (40%), Gaps = 47/254 (18%)
Query: 75 NFRVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLA 134
V+++ +++ +F L + AA AN RR ++++PT+AI V I NNTSV+ DE L
Sbjct: 2 TMEVDILEMSERSAKFVLSDVSAAFANGIRRAALSDVPTLAITYVNIYNNTSVLFDEQLG 61
Query: 135 HRLGLIPIIVDPRLFEYMSENDTSNEKNTIVFKLHVLCERGGPRLTVKTNELKWLPNGSE 194
RL LIP+ + F + E + GSE
Sbjct: 62 LRLALIPLAANIEEFVPVEE---------------------------------CICGGSE 88
Query: 195 LPLETKPDSNPSSKPRTYTS---FSSSQDLLPEFSNNPIRPMLDITIARLGPGQEIELEA 251
P + + PR S SS + + P +N P I L GQ++ LEA
Sbjct: 89 CPACRVSLTLSAEGPRMVYSGDFVSSDETVQPAEANIP--------IIELKEGQKVVLEA 140
Query: 252 HAVKGIGKTHAKWSPVATAWYRMLPEIVLLEDVEDEDAEKLVKTCPVNVFDIEDIGSGKK 311
A G G HA+W Y+ +P +V + A VK CP + + G+G
Sbjct: 141 IAHMGYGNQHARWQAGVACGYKNMP-VVTFNKCDSCGA--CVKECPQGIITMGPEGAGIS 197
Query: 312 RATVAQPRACTLCR 325
+ + C LC+
Sbjct: 198 EDDILKCILCKLCQ 211
>gi|70917445|ref|XP_732857.1| hypothetical protein [Plasmodium chabaudi chabaudi]
gi|56504115|emb|CAH83736.1| hypothetical protein PC300662.00.0 [Plasmodium chabaudi chabaudi]
Length = 126
Score = 79.3 bits (194), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 41/120 (34%), Positives = 71/120 (59%)
Query: 32 IEFQRTRVQCNLDAPIHTENVMYSGAYASMGVDNSLQLDHFCNNFRVEVIRLTKDDMEFD 91
I+++ V+ + P + + G+Y +N ++ F N +++I+ ++ + +
Sbjct: 4 IKYKDQFVKMGQEGPRNATTTNFYGSYFLTENENFFDINKFEENLEMKIIKNEENLLILE 63
Query: 92 LIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRLGLIPIIVDPRLFEY 151
+ ++ +IANA RRI+I+E+PT+AIEKV I NT VI DE+L HRLGLIP + L +
Sbjct: 64 IKNLNVSIANALRRIMISEVPTIAIEKVNIFQNTGVIADEILCHRLGLIPFKFNADLINF 123
>gi|303389576|ref|XP_003073020.1| DNA-directed RNA polymerase II subunit Rpb3 [Encephalitozoon
intestinalis ATCC 50506]
gi|303302164|gb|ADM11660.1| DNA-directed RNA polymerase II subunit Rpb3 [Encephalitozoon
intestinalis ATCC 50506]
Length = 240
Score = 79.3 bits (194), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 61/189 (32%), Positives = 89/189 (47%), Gaps = 41/189 (21%)
Query: 83 LTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRLGLIPI 142
LT + + F L ANA RRILI+E+PT+AI+ V I N +V+ DEVLAHRLGLIP
Sbjct: 9 LTPERIRFTLSNTTVGYANALRRILISEVPTIAIDMVEIERNNTVLPDEVLAHRLGLIP- 67
Query: 143 IVDPRLFEYMSENDTSN--EKNTIVFKLHVLCERGGPRLTVKTNELKWLPNGSELPLETK 200
+ R +Y E S + ++VF++ V+ R+ V T ++
Sbjct: 68 VYSKRELKYKDECSCSGFCSECSVVFEIDVVHTEDALRV-VSTRDI-------------- 112
Query: 201 PDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPMLDITIARLGPGQEIELEAHAVKGIGKT 260
+D++ + PI I +L Q ++ KGIG+T
Sbjct: 113 --------------ICDEEDVV--VKSGPI-------ITKLARDQGLKARCIGRKGIGRT 149
Query: 261 HAKWSPVAT 269
HAKWSPV+
Sbjct: 150 HAKWSPVSA 158
>gi|85082680|ref|XP_956964.1| DNA-directed RNA polymerase II 33 kDa polypeptide [Neurospora
crassa OR74A]
gi|7801032|emb|CAB91428.1| probable DNA-directed RNA polymerase II chain RPB3 [Neurospora
crassa]
gi|28918046|gb|EAA27728.1| DNA-directed RNA polymerase II 33 kDa polypeptide [Neurospora
crassa OR74A]
gi|336468167|gb|EGO56330.1| hypothetical protein NEUTE1DRAFT_83471 [Neurospora tetrasperma FGSC
2508]
gi|350289588|gb|EGZ70813.1| DNA-directed RNA polymerase II 33 kDa polypeptide [Neurospora
tetrasperma FGSC 2509]
Length = 337
Score = 79.3 bits (194), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 63/205 (30%), Positives = 103/205 (50%), Gaps = 37/205 (18%)
Query: 80 VIRLTKDD---MEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHR 136
V+++++ D ++F+L + + AN+ RR+++AE+PT+AI+ V I N+SV+ DE +AHR
Sbjct: 17 VVKISQADNTRVKFELSNTELSFANSLRRVMLAEIPTIAIDLVEIEANSSVLADEFIAHR 76
Query: 137 LGLIPI---IVDPRLFEYMSENDTSNEKNTIVFKLHVLCERGGPRLTVKTNELKWLPNGS 193
LGLIP+ ++ L+ + D E ++ LH C G + V +L +P G
Sbjct: 77 LGLIPLNAEGIEQLLYSRDCDCDEYCEHCSVTLNLHAKC-TGDDIMQVCARDL--VPVGD 133
Query: 194 ELPLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNP--IRPMLDITIARLGPGQEIELEA 251
+ +Q L N+P P+ I +L GQEI+L+
Sbjct: 134 RV----------------------NQVLGSPIINDPEGQGPL----ILKLRHGQEIKLQC 167
Query: 252 HAVKGIGKTHAKWSPVATAWYRMLP 276
A KGI K H+KW+P A + P
Sbjct: 168 IAKKGIAKEHSKWAPSAAIGFEYDP 192
>gi|298674771|ref|YP_003726521.1| DNA-directed RNA polymerase [Methanohalobium evestigatum Z-7303]
gi|298287759|gb|ADI73725.1| DNA-directed RNA polymerase [Methanohalobium evestigatum Z-7303]
Length = 265
Score = 79.3 bits (194), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 68/252 (26%), Positives = 112/252 (44%), Gaps = 43/252 (17%)
Query: 76 FRVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAH 135
+V+++ L++ F L A AN+ RR ++A++PT AI+ + I NNTSV+ DE L
Sbjct: 3 MKVDMLELSERSARFVLSNTTPAFANSIRRAMLADVPTFAIDDLNIYNNTSVLYDEQLGL 62
Query: 136 RLGLIPIIVDPRLFEYMSENDTSNEKNTIVFKLHVLCERGGPRLTVKTNELKWLPNGSEL 195
RL LIP+ + + +Y ++++ + E+ ++ + GP++ V + +L
Sbjct: 63 RLALIPLATE-NIDDYTTQDECTCEEGCPSCEVSITLSAEGPKM-VYSGDL--------- 111
Query: 196 PLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPMLDITIARLGPGQEIELEAHAVK 255
SS + P +N P I L Q + LEA A K
Sbjct: 112 -------------------ISSDPGIQPADTNIP--------IIELKEDQRVVLEALAHK 144
Query: 256 GIGKTHAKWSPVATAWYRMLPEIVLLEDVEDEDAEKL-VKTCPVNVFDIEDIGSGKKRAT 314
G+GK +AKW Y+ LP I V + D L V CP + +++ G+
Sbjct: 145 GLGKDNAKWQAGVACGYKNLPLI----RVNNCDKCGLCVSECPKGIIYLDEEGAKVADEN 200
Query: 315 VAQPRACTLCRE 326
+ C LC E
Sbjct: 201 LMDCILCKLCEE 212
>gi|407464315|ref|YP_006775197.1| RNA polymerase insert [Candidatus Nitrosopumilus sp. AR2]
gi|407047503|gb|AFS82255.1| RNA polymerase insert [Candidatus Nitrosopumilus sp. AR2]
Length = 212
Score = 79.3 bits (194), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 68/218 (31%), Positives = 96/218 (44%), Gaps = 49/218 (22%)
Query: 78 VEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRL 137
+EVI + L GI ANA RR+ + +P AI+ V I N+SV+ DE LAHRL
Sbjct: 4 LEVISKDNQKIAVKLSGIPLQYANALRRVCLNGVPVFAIDTVDIIENSSVLPDEGLAHRL 63
Query: 138 GLIPIIVDPRLFEYMSENDTSNEKNTIVFKLHVLCERGGPRL--TVKTNELKWLPNGSEL 195
GLIP+ D F S+ + +E ++ ++ + G + TV +NEL
Sbjct: 64 GLIPLTTDLSRFNEPSKCECQSETGCSNCRVMLVLDSGDSDVTRTVLSNEL--------- 114
Query: 196 PLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPMLD-ITIARLGPGQEIELEAHAV 254
SS+D + I+P D I I +L PGQ I++E +A
Sbjct: 115 ---------------------SSED-------DSIKPTSDKIPIVQLAPGQRIKIECYAR 146
Query: 255 KGIGKTHAKWSPVATAWYRMLPEIVLLEDVEDEDAEKL 292
G G HAKW+ I L D E ED + L
Sbjct: 147 LGRGTEHAKWNSAT---------ISTLTDTEKEDVKVL 175
>gi|119190113|ref|XP_001245663.1| hypothetical protein CIMG_05104 [Coccidioides immitis RS]
gi|392868567|gb|EAS34367.2| RNA polymerase II subunit 3 [Coccidioides immitis RS]
Length = 345
Score = 79.3 bits (194), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 59/194 (30%), Positives = 93/194 (47%), Gaps = 33/194 (17%)
Query: 88 MEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRLGLIPII---- 143
++F L +D A AN+ RR+++ E+PT+AI+ V I +NTSV+ DE +AHRLGLIP+
Sbjct: 25 VDFRLTSVDLAFANSLRRVMLTEVPTVAIDVVEIESNTSVLPDEFIAHRLGLIPLHSKNC 84
Query: 144 -VDPRLFEYMSENDTSNEKNTIVFKLHVLCERGGPRLTVKTNELKWLPNGSELPLETKPD 202
VD ++ + + + I +LH C G + V +L + + + +
Sbjct: 85 DVD-MVYARECDCEGGCSRCVITLQLHAKCTGEG-VMVVYARDLVVVGDRANEWVGNPVI 142
Query: 203 SNPSSKPRTYTSFSSSQDLLPEFSNNPIRPMLDITIARLGPGQEIELEAHAVKGIGKTHA 262
++P+ K PI I +L GQE+++ KGI K HA
Sbjct: 143 NDPAGK-------------------GPI-------ICKLRRGQEVKMTCTVKKGIAKEHA 176
Query: 263 KWSPVATAWYRMLP 276
KWSP A + P
Sbjct: 177 KWSPTAAVGFEYDP 190
>gi|320033013|gb|EFW14963.1| DNA-directed RNA polymerase 2 subunit RPB3 [Coccidioides posadasii
str. Silveira]
Length = 345
Score = 79.3 bits (194), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 59/194 (30%), Positives = 93/194 (47%), Gaps = 33/194 (17%)
Query: 88 MEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRLGLIPII---- 143
++F L +D A AN+ RR+++ E+PT+AI+ V I +NTSV+ DE +AHRLGLIP+
Sbjct: 25 VDFRLTSVDLAFANSLRRVMLTEVPTVAIDVVEIESNTSVLPDEFIAHRLGLIPLHSKNC 84
Query: 144 -VDPRLFEYMSENDTSNEKNTIVFKLHVLCERGGPRLTVKTNELKWLPNGSELPLETKPD 202
VD ++ + + + I +LH C G + V +L + + + +
Sbjct: 85 DVD-MVYARECDCEGGCSRCVITLQLHAKCTGEG-VMVVYARDLVVVGDRANEWVGNPVI 142
Query: 203 SNPSSKPRTYTSFSSSQDLLPEFSNNPIRPMLDITIARLGPGQEIELEAHAVKGIGKTHA 262
++P+ K PI I +L GQE+++ KGI K HA
Sbjct: 143 NDPAGK-------------------GPI-------ICKLRRGQEVKMTCTVKKGIAKEHA 176
Query: 263 KWSPVATAWYRMLP 276
KWSP A + P
Sbjct: 177 KWSPTAAVGFEYDP 190
>gi|255932027|ref|XP_002557570.1| Pc12g07350 [Penicillium chrysogenum Wisconsin 54-1255]
gi|211582189|emb|CAP80362.1| Pc12g07350 [Penicillium chrysogenum Wisconsin 54-1255]
Length = 335
Score = 79.3 bits (194), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 59/206 (28%), Positives = 92/206 (44%), Gaps = 58/206 (28%)
Query: 88 MEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRLGLIPI---IV 144
++F L +D A AN+ RR ++AE+PT+A++ + I +NTSV+ DE LAHRLG+IP+
Sbjct: 24 VDFRLTAVDLAFANSLRRTILAEVPTLALDLIEIESNTSVLPDEFLAHRLGMIPLNSYNC 83
Query: 145 DPRLFEYMSENDTSNE--KNTIVFKLHVLCERG------------GPRLTVKTNELKWLP 190
D L +Y + D + + ++ LH C G G R+ K +
Sbjct: 84 DQDL-DYTRDCDCEDHCVRCSVTLSLHARCGSGIMSVYARDLIVVGERINDKIGD----- 137
Query: 191 NGSELPLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPMLDITIARLGPGQEIELE 250
P+ T P+ + P+ I +L GQE+++
Sbjct: 138 -----PVTTDPE-----------------------NKGPL-------ICKLRKGQEVKMT 162
Query: 251 AHAVKGIGKTHAKWSPVATAWYRMLP 276
A KG K HAKW+P A + P
Sbjct: 163 CLAKKGTAKEHAKWAPTAAVGFEYDP 188
>gi|325968486|ref|YP_004244678.1| RNA polymerase insert [Vulcanisaeta moutnovskia 768-28]
gi|323707689|gb|ADY01176.1| RNA polymerase insert [Vulcanisaeta moutnovskia 768-28]
Length = 317
Score = 79.3 bits (194), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 67/211 (31%), Positives = 105/211 (49%), Gaps = 39/211 (18%)
Query: 78 VEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRL 137
V+VI + M+ + GI + NA RR+ I+++P +AI++V+I +NTSV+ DEVLAHRL
Sbjct: 21 VKVIEKSDLYMKAVVDGITPPLINALRRVFISDVPVLAIDEVIILDNTSVLYDEVLAHRL 80
Query: 138 GLIPIIVDPRLFEYMSENDTSNEKNTIVFKLHVLCERGGPRLTVKTNELKWLPNGSELPL 197
+IPI D + + E + E P L ++++ EL +
Sbjct: 81 SMIPIKTDLKKLPKIEECEQ---------------ELVDPSLC----QVRF-----ELNV 116
Query: 198 ETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPML-DITIARLGPGQEIELEAHAVKG 256
E K Y S D PE +RP+ D+ I +L PGQ+I LEA+A G
Sbjct: 117 EAK------EPVVVYGRDLKSDD--PE-----VRPVYEDVPIVKLVPGQKIVLEAYAKLG 163
Query: 257 IGKTHAKWSPVATAWYRMLPEIVLLEDVEDE 287
+ HAKW A+Y P++ +++ D+
Sbjct: 164 RARNHAKWQAGLAAYY-YYPKVSVVDKANDK 193
>gi|296812527|ref|XP_002846601.1| RNA polymerase II subunit 3 [Arthroderma otae CBS 113480]
gi|238841857|gb|EEQ31519.1| RNA polymerase II subunit 3 [Arthroderma otae CBS 113480]
Length = 359
Score = 79.0 bits (193), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 61/194 (31%), Positives = 87/194 (44%), Gaps = 33/194 (17%)
Query: 88 MEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRLGLIPIIVDPR 147
++F L +D A AN+FRR ++AE+PT+AI+ V I NTSV+ DE ++HRLGLIP+
Sbjct: 35 VDFRLSSVDLAFANSFRRTILAEIPTVAIDVVEIEVNTSVLPDEFISHRLGLIPLC---- 90
Query: 148 LFEYMSENDTSNEKNTIVFKLHVLCERGGPRLTVKTNELKWLPNGSELPLETKPDSNPSS 207
+ N +++ CE G R + L L K S
Sbjct: 91 ---------SKNCDTDMLYSRDCDCEGGCQRCVIN------------LSLHAKCTSEEIM 129
Query: 208 KPRTYTSFSSSQDLLPEFSNNPIRPMLD-----ITIARLGPGQEIELEAHAVKGIGKTHA 262
K D E+ NP+ + D I +L GQE++ KGI K HA
Sbjct: 130 KVYA-RDLVVVGDRANEWVGNPV--LTDPEGKGPIICKLRRGQEVKFNCIVKKGIAKEHA 186
Query: 263 KWSPVATAWYRMLP 276
KW+P A + P
Sbjct: 187 KWAPTAAVGFEYDP 200
>gi|307594234|ref|YP_003900551.1| RNA polymerase insert [Vulcanisaeta distributa DSM 14429]
gi|307549435|gb|ADN49500.1| RNA polymerase insert [Vulcanisaeta distributa DSM 14429]
Length = 302
Score = 79.0 bits (193), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 63/196 (32%), Positives = 100/196 (51%), Gaps = 41/196 (20%)
Query: 94 GIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRLGLIPIIVDPRLFEYMS 153
G+ + N+ RR+LI+++P +AI++V+I +NTSV+ DEVLAHRL ++PI D R +
Sbjct: 20 GVTPPVINSLRRVLISDVPVLAIDEVIILDNTSVLYDEVLAHRLSMMPIKTDLRKLPKIE 79
Query: 154 ENDTSNEKNTIVFKLHVLCERGGPRLTVKTNELKWLPNGSELPLETKPDSNPSSKPRTYT 213
E + E P L ++++ EL +E K
Sbjct: 80 ECEQ---------------ELVDPSLC----QVRF-----ELNVEAKE-----------P 104
Query: 214 SFSSSQDLLPEFSNNP-IRPML-DITIARLGPGQEIELEAHAVKGIGKTHAKWSPVATAW 271
S+DL S++P +RP+ DI I +L PGQ+I LEA+A G + HAKW A
Sbjct: 105 MIVYSRDLK---SDDPEVRPVYEDIPIVKLVPGQKIVLEAYAKLGRARNHAKWQ-AGLAS 160
Query: 272 YRMLPEIVLLEDVEDE 287
Y P++ ++ +D+
Sbjct: 161 YYYYPKVSVVGKADDK 176
>gi|402076627|gb|EJT72050.1| DNA-directed RNA polymerase II subunit RPB3 [Gaeumannomyces
graminis var. tritici R3-111a-1]
Length = 340
Score = 79.0 bits (193), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 65/224 (29%), Positives = 98/224 (43%), Gaps = 48/224 (21%)
Query: 64 DNSLQLDHFCNNFRVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIAN 123
DN+ +L + + +R+ F+L +D ++ANA RR+++AE+PT+AI+ I
Sbjct: 8 DNADELGATVKIYHADSVRVN-----FELSNVDLSLANAVRRVMLAEIPTIAIDNCEIKE 62
Query: 124 NTSVIQDEVLAHRLGLIPIIVDPRL---FEYMSENDTSN--EKNTIVFKLHVLCERGGPR 178
NTSV+ DE +AHRLGL+P+ D R Y + D + ++ +++ CE P
Sbjct: 63 NTSVLADEFIAHRLGLVPL--DARGVADLNYSRDCDCEQYCDNCSVTIEINARCEVDDPG 120
Query: 179 LTVKTNELK-WL----PNGS-ELPLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRP 232
K W+ PN P+ T PD N
Sbjct: 121 HVSKFYAKDLWVVGNPPNKYVGKPVITDPDEN---------------------------- 152
Query: 233 MLDITIARLGPGQEIELEAHAVKGIGKTHAKWSPVATAWYRMLP 276
I + +L GQEI + A KGI K HAKW P + P
Sbjct: 153 --GIILFKLRYGQEIRIRCIAKKGIAKEHAKWCPATAIGFEYDP 194
>gi|303322553|ref|XP_003071268.1| DNA-directed RNA polymerase II 45 kDa polypeptide, putative
[Coccidioides posadasii C735 delta SOWgp]
gi|240110970|gb|EER29123.1| DNA-directed RNA polymerase II 45 kDa polypeptide, putative
[Coccidioides posadasii C735 delta SOWgp]
Length = 345
Score = 79.0 bits (193), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 59/194 (30%), Positives = 93/194 (47%), Gaps = 33/194 (17%)
Query: 88 MEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRLGLIPII---- 143
++F L +D A AN+ RR+++ E+PT+AI+ V I +NTSV+ DE +AHRLGLIP+
Sbjct: 25 VDFRLTSVDLAFANSLRRVMLTEVPTVAIDVVEIESNTSVLPDEFIAHRLGLIPLHSKNC 84
Query: 144 -VDPRLFEYMSENDTSNEKNTIVFKLHVLCERGGPRLTVKTNELKWLPNGSELPLETKPD 202
VD ++ + + + I +LH C G + V +L + + + +
Sbjct: 85 DVD-MVYARECDCEGGCSRCLITLQLHAKCTGEG-VMVVYARDLVVVGDRANEWVGNPVI 142
Query: 203 SNPSSKPRTYTSFSSSQDLLPEFSNNPIRPMLDITIARLGPGQEIELEAHAVKGIGKTHA 262
++P+ K PI I +L GQE+++ KGI K HA
Sbjct: 143 NDPAGK-------------------GPI-------ICKLRRGQEVKMTCTVKKGIAKEHA 176
Query: 263 KWSPVATAWYRMLP 276
KWSP A + P
Sbjct: 177 KWSPTAAVGFEYDP 190
>gi|223477958|ref|YP_002582352.1| DNA-directed RNA polymerase subunit D [Thermococcus sp. AM4]
gi|214033184|gb|EEB74012.1| DNA-directed RNA polymerase subunit D [Thermococcus sp. AM4]
Length = 260
Score = 78.6 bits (192), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 62/210 (29%), Positives = 96/210 (45%), Gaps = 45/210 (21%)
Query: 77 RVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHR 136
+ E++ D ++F L G+D ANA RR ++AE+PT A+++V N S + DE++AHR
Sbjct: 4 KFEILERRGDAIKFILRGVDVPFANALRRTILAEVPTFAVDEVEFFENDSALFDEIIAHR 63
Query: 137 LGLIPIIVDPRLFEYMSENDTSNEKNTIVFKLHVLCERGGPRLTVKTNELKWLPNGSELP 196
L +IP+ E S + + T+ L GP + V + +LK G
Sbjct: 64 LAMIPLTTP---VERFSLDSLDLDDYTVTLSLQA----EGPGM-VYSGDLKSDDEG---- 111
Query: 197 LETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPMLDITIARLGPGQEIELEAHAVKG 256
KP +NP +I I +L GQ++ A+A G
Sbjct: 112 --VKP-ANP-----------------------------NIPIVKLAEGQKLTFNAYARLG 139
Query: 257 IGKTHAKWSPVATAWYRMLPEIVLLEDVED 286
GK HAKW P +Y+ L EI + ++V D
Sbjct: 140 RGKDHAKWQP-GFVYYKYLTEIHVSKEVPD 168
>gi|401826632|ref|XP_003887409.1| DNA-directed RNA polymerase II subunit RPB3 [Encephalitozoon hellem
ATCC 50504]
gi|395459927|gb|AFM98428.1| DNA-directed RNA polymerase II subunit RPB3 [Encephalitozoon hellem
ATCC 50504]
Length = 240
Score = 78.6 bits (192), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 61/188 (32%), Positives = 88/188 (46%), Gaps = 41/188 (21%)
Query: 83 LTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRLGLIPI 142
LT ++F L ANA RRILI+E+PT+AI+ V I N +V+ DEVLAHRLGL+P
Sbjct: 9 LTAGHIKFTLSNTTVGYANALRRILISEVPTIAIDMVEIERNNTVLPDEVLAHRLGLVP- 67
Query: 143 IVDPRLFEYMSENDTSN--EKNTIVFKLHVLCERGGPRLTVKTNELKWLPNGSELPLETK 200
I R +Y E S + ++VF++ V+ R V T ++
Sbjct: 68 IYSKRSLKYKEECGCSGFCSECSVVFEIDVVHTEDTLR-AVSTRDI-------------- 112
Query: 201 PDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPMLDITIARLGPGQEIELEAHAVKGIGKT 260
+D++ + PI I +L Q ++ KGIGKT
Sbjct: 113 --------------ICDEEDVV--IKSGPI-------ITKLARDQGLKARCIGRKGIGKT 149
Query: 261 HAKWSPVA 268
H+KWSPV+
Sbjct: 150 HSKWSPVS 157
>gi|407461953|ref|YP_006773270.1| RNA polymerase insert [Candidatus Nitrosopumilus koreensis AR1]
gi|407045575|gb|AFS80328.1| RNA polymerase insert [Candidatus Nitrosopumilus koreensis AR1]
Length = 221
Score = 78.6 bits (192), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 69/213 (32%), Positives = 97/213 (45%), Gaps = 47/213 (22%)
Query: 78 VEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRL 137
+EVI + L G+ ANA RR+ + +P AI+ V I NTSV+ DE LAHRL
Sbjct: 13 LEVISKDNQKIALKLKGVPLQYANALRRVCLNGVPVFAIDTVDIIENTSVLPDEGLAHRL 72
Query: 138 GLIPIIVDPRLFEYMSENDTSNEKNTIVFKLHVLCERGGPRL--TVKTNELKWLPNGSEL 195
GLIP+ D F S+ + +E K+ ++ + G + TV +NE+
Sbjct: 73 GLIPLKTDLSRFNEPSKCECQSEAGCSNCKVMLVLDSGDSDVTRTVLSNEI--------- 123
Query: 196 PLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPMLD-ITIARLGPGQEIELEAHAV 254
SS+D + I P+ D I I L PGQ+I++E +A
Sbjct: 124 ---------------------SSED-------DSITPISDKIPIVELAPGQKIKIECYAR 155
Query: 255 KGIGKTHAKWSPVATAWYRMLPEIVLLEDVEDE 287
G G HAKW+ +A ML E D EDE
Sbjct: 156 LGRGTEHAKWN---SANISMLTET----DKEDE 181
>gi|396081532|gb|AFN83148.1| DNA-directed RNA polymerase II subunit Rpb3 [Encephalitozoon
romaleae SJ-2008]
Length = 240
Score = 78.6 bits (192), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 60/191 (31%), Positives = 90/191 (47%), Gaps = 45/191 (23%)
Query: 83 LTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRLGLIPI 142
LT + ++F L ANA RRILI+E+PT+AI+ V I N +V+ DEVLAHRLGL+P
Sbjct: 9 LTPERIKFTLSNATVGYANALRRILISEVPTIAIDMVEIERNNTVLPDEVLAHRLGLVP- 67
Query: 143 IVDPRLFEYMSENDTSN--EKNTIVFKLHVLCERGGPRLTVKTNELKWLPNGSELPLETK 200
I R +Y E S + ++VF++ ++ R+
Sbjct: 68 IYSKRELKYKEECSCSGFCSECSVVFEIDIVHTEDALRVV-------------------- 107
Query: 201 PDSNPSSKPRTYTSFSSSQDLLPEFSNNPIR--PMLDITIARLGPGQEIELEAHAVKGIG 258
S++D++ + + I+ PM I +L Q ++ KGIG
Sbjct: 108 ----------------SARDIVCDEGDVVIKSGPM----ITKLARDQGLKARCIGRKGIG 147
Query: 259 KTHAKWSPVAT 269
K HAKWSPV+
Sbjct: 148 KIHAKWSPVSA 158
>gi|344305493|gb|EGW35725.1| hypothetical protein SPAPADRAFT_58923 [Spathaspora passalidarum
NRRL Y-27907]
Length = 302
Score = 78.2 bits (191), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 61/200 (30%), Positives = 88/200 (44%), Gaps = 28/200 (14%)
Query: 78 VEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRL 137
V + +D + F L + A AN+ RR ++AE+PT+AI+ V I NTSV+ DE +AHRL
Sbjct: 12 VTIREAERDHVNFILKNVSLASANSIRRTMLAEVPTLAIDLVEIDVNTSVLADEFIAHRL 71
Query: 138 GLIPIIVDPRLFEYMSENDTSNEKNTIVFKLHVLCERGGPRLTVKTNELKWLPNGSELPL 197
GLIP++ S + + C+ + +V+ EL
Sbjct: 72 GLIPLV--------------SEGIENLTYSRDCTCDNYCSKCSVRL----------ELTA 107
Query: 198 ETKPDSNPSSKPRTYTSFSSSQDLL-PEFSNNPIRPMLDITIARLGPGQEIELEAHAVKG 256
+ DS S F + L P + R L I +L QE+ + A KG
Sbjct: 108 KCDSDSTMSVYASDLAKFHNGSRLGDPVIRDAQGRGSL---ICKLRKHQELRIVCIAKKG 164
Query: 257 IGKTHAKWSPVATAWYRMLP 276
I K HAKWSP A + P
Sbjct: 165 IAKEHAKWSPCAAVGFEYDP 184
>gi|453089708|gb|EMF17748.1| insert subdomain of RNA polymerase alpha subunit [Mycosphaerella
populorum SO2202]
Length = 362
Score = 78.2 bits (191), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 67/224 (29%), Positives = 102/224 (45%), Gaps = 53/224 (23%)
Query: 77 RVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHR 136
++ + T + F L A+AN+ RR+++AE+PT+AI+ I NTSV+ DE LAHR
Sbjct: 17 KITIRETTDKSIRFRLSNTSLALANSVRRVMLAEVPTIAIDLCEIEANTSVLADEFLAHR 76
Query: 137 LGLIPI-------IVDPR---LFEY---------MSENDTSNEKNTIVFKLHVLCERGGP 177
LGLIP+ +VD R EY ++ + ++++N VF + E G P
Sbjct: 77 LGLIPLSTKGVDEMVDFRDCTCDEYCDNCSVVLRLNAANRNSDQNLKVFARDLFVESGAP 136
Query: 178 RLTVKTNELKWLPNGSELPLETKPDSNPSSKPRTYTSFSSSQDLLPEFS---NNPI--RP 232
+ NG + +SS DL P + +P P
Sbjct: 137 GVATYNRS-----NG--------------------VNGTSSDDLPPRGAPIIGDPAGQGP 171
Query: 233 MLDITIARLGPGQEIELEAHAVKGIGKTHAKWSPVATAWYRMLP 276
+ I +L GQE+ ++ A KGI K HAKW+P A + P
Sbjct: 172 L----ICQLRRGQELRIKCIAKKGIAKEHAKWAPTAAIGFEYDP 211
>gi|340624633|ref|YP_004743086.1| DNA-directed RNA polymerase subunit D [Methanococcus maripaludis
X1]
gi|339904901|gb|AEK20343.1| DNA-directed RNA polymerase subunit D [Methanococcus maripaludis
X1]
Length = 195
Score = 78.2 bits (191), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 61/201 (30%), Positives = 90/201 (44%), Gaps = 56/201 (27%)
Query: 98 AIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRLGLIPIIVDPRLFEYMSENDT 157
+ ++A RRI+I+E+PT AIE V NTS + DEVLAHRLGLIPI
Sbjct: 25 SFSSALRRIMISEVPTYAIENVYFYENTSSMYDEVLAHRLGLIPI--------------- 69
Query: 158 SNEKNTIVFKLHVLCERGGPRLTVKTNELKWLPNGSELPLETKPDSNPSSKPRTYTSFSS 217
+G P +G E+ + T P + Y+S
Sbjct: 70 ----------------KGVP------------VSGDEVIVLTISKEGPCT---VYSSDLK 98
Query: 218 SQDLLPEFSNNPIRPMLDITIARLGPGQEIELEAHAVKGIGKTHAKWSPVATAWYRMLPE 277
S+ P F N P I +L Q++ELE A+ G GK HAKW P ++ ++ +
Sbjct: 99 SESGEPAFENIP--------IVKLAEDQKLELETEALVGTGKIHAKWQPCNASYKQISND 150
Query: 278 IV--LLEDVEDEDAEKLVKTC 296
V +E + DAE ++++
Sbjct: 151 EVEFKIESFGNMDAEDIIRSS 171
>gi|315050740|ref|XP_003174744.1| DNA-directed RNA polymerase II subunit RPB3 [Arthroderma gypseum
CBS 118893]
gi|311340059|gb|EFQ99261.1| DNA-directed RNA polymerase II subunit RPB3 [Arthroderma gypseum
CBS 118893]
Length = 369
Score = 78.2 bits (191), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 61/196 (31%), Positives = 87/196 (44%), Gaps = 37/196 (18%)
Query: 88 MEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRLGLIPIIVDPR 147
++F L +D A AN+FRR ++AE+PT+AI+ V I NTSV+ DE ++HRLGLIP+
Sbjct: 43 VDFRLSSVDLAFANSFRRTILAEIPTVAIDVVEIEVNTSVLPDEFISHRLGLIPLC---- 98
Query: 148 LFEYMSENDTSNEKNTIVFKLHVLCERGGPRLTVKTNELKWLPNGSELPLETKPDSNPSS 207
+ N +++ CE G R + L L K S
Sbjct: 99 ---------SKNCDTDMLYSRDCDCEAGCARCVIN------------LSLHAKCTSEDIM 137
Query: 208 KPRTYTSFSSSQDLLPEFSNNPI-------RPMLDITIARLGPGQEIELEAHAVKGIGKT 260
K D E+ NP+ P+ I +L GQE++ KGI K
Sbjct: 138 KVYA-RDLVVVGDRANEWVGNPVVTDPEGKGPI----ICKLRRGQEVKFNCIVKKGIAKE 192
Query: 261 HAKWSPVATAWYRMLP 276
HAKW+P A + P
Sbjct: 193 HAKWAPTAAVGFEYDP 208
>gi|240104023|ref|YP_002960332.1| DNA-directed RNA polymerase subunit D [Thermococcus gammatolerans
EJ3]
gi|239911577|gb|ACS34468.1| DNA-directed RNA polymerase subunit D (rpoD) [Thermococcus
gammatolerans EJ3]
Length = 260
Score = 78.2 bits (191), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 62/210 (29%), Positives = 96/210 (45%), Gaps = 45/210 (21%)
Query: 77 RVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHR 136
+ E+ +D ++F L G+D ANA RR ++AE+PT A+++V N S + DE++AHR
Sbjct: 4 KFEIFERREDAIKFILRGVDVPFANALRRTILAEVPTFAVDEVEFFENDSALFDEIIAHR 63
Query: 137 LGLIPIIVDPRLFEYMSENDTSNEKNTIVFKLHVLCERGGPRLTVKTNELKWLPNGSELP 196
L +IP+ E S + + T+ L GP + V + +LK G
Sbjct: 64 LAMIPLTTP---VERFSLDALELDDYTVTLSLQA----EGPGM-VYSGDLKSDDEG---- 111
Query: 197 LETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPMLDITIARLGPGQEIELEAHAVKG 256
KP +NP +I I +L GQ++ A+A G
Sbjct: 112 --VKP-ANP-----------------------------NIPIVKLAEGQKLTFNAYAKLG 139
Query: 257 IGKTHAKWSPVATAWYRMLPEIVLLEDVED 286
GK HAKW P +Y+ L EI + ++V D
Sbjct: 140 RGKDHAKWQP-GFVYYKYLTEIHVSKEVPD 168
>gi|213405883|ref|XP_002173713.1| DNA-directed RNA polymerase II subunit RPB3 [Schizosaccharomyces
japonicus yFS275]
gi|212001760|gb|EEB07420.1| DNA-directed RNA polymerase II subunit RPB3 [Schizosaccharomyces
japonicus yFS275]
Length = 308
Score = 78.2 bits (191), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 66/207 (31%), Positives = 94/207 (45%), Gaps = 38/207 (18%)
Query: 78 VEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRL 137
V + + K+ +EF L D ++AN+ RR+++ E+PT+AI+ V I+ NTSV+ DE LAHRL
Sbjct: 7 VTIKNIGKNSVEFVLSNTDLSLANSLRRVVLGEIPTVAIDLVEISVNTSVMPDEFLAHRL 66
Query: 138 GLIPIIVD------PRLFEYMSENDTSN--EKNTIVFKLHVLCERGGPRLTVKTNELKWL 189
G+IP+ + P EY D K ++ L+ C G + V +L
Sbjct: 67 GMIPLNSNNIDEPPPVGLEYTRNCDCDQYCNKCSVELSLNAKCTGDG-TMEVYARDL--- 122
Query: 190 PNGSELPLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPMLDITIARLGPGQEIEL 249
DSN S L S+ P+ I +L QE+ L
Sbjct: 123 ----------VVDSN---------STLGQPVLADARSHGPL-------ILKLRKEQEVSL 156
Query: 250 EAHAVKGIGKTHAKWSPVATAWYRMLP 276
A KGI K HAKWSP A + P
Sbjct: 157 RCIAKKGIAKEHAKWSPTAAVSFEYDP 183
>gi|389852940|ref|YP_006355174.1| DNA-directed RNA polymerase subunit D [Pyrococcus sp. ST04]
gi|388250246|gb|AFK23099.1| DNA-directed RNA polymerase subunit D [Pyrococcus sp. ST04]
Length = 259
Score = 78.2 bits (191), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 64/220 (29%), Positives = 102/220 (46%), Gaps = 50/220 (22%)
Query: 78 VEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRL 137
+E++ D ++F L G+ A ANA RR ++AE+PT A+++V N S + DE++AHRL
Sbjct: 4 IEILEKRDDSIKFILKGVHVAFANALRRTILAEVPTFAVDEVEFYENDSALFDEIIAHRL 63
Query: 138 GLIPIIVDPRLFEYMSENDTSNEKNTIVFKLHVLCERGGPRLTVKTNELKWLPNGSELPL 197
+IP+ FE + + T+ L E GP + V + +LK
Sbjct: 64 AMIPLTTPVDRFEL---DALELDDYTVTLSL----EAEGPGI-VYSGDLK---------- 105
Query: 198 ETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNP-IRPML-DITIARLGPGQEIELEAHAVK 255
S++P +RP+ DI I +L GQ + A+A
Sbjct: 106 ----------------------------SDDPDVRPVTPDIPIVKLAKGQRLVFNAYAKL 137
Query: 256 GIGKTHAKWSPVATAWYRMLPEIVLLEDVED-EDAEKLVK 294
G GK HAKW P +Y+ +I + +++E E +KL K
Sbjct: 138 GRGKDHAKWQP-GFVYYKYYTKIHISKEIEGWEKLKKLAK 176
>gi|302654573|ref|XP_003019090.1| hypothetical protein TRV_06869 [Trichophyton verrucosum HKI 0517]
gi|291182788|gb|EFE38445.1| hypothetical protein TRV_06869 [Trichophyton verrucosum HKI 0517]
Length = 351
Score = 78.2 bits (191), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 60/196 (30%), Positives = 87/196 (44%), Gaps = 37/196 (18%)
Query: 88 MEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRLGLIPIIVDPR 147
++F L +D A AN+FRR ++AE+PT+AI+ V I NTSV+ DE ++HRLGLIP+
Sbjct: 25 VDFRLSSVDLAFANSFRRTILAEIPTVAIDVVEIEVNTSVLPDEFISHRLGLIPLC---- 80
Query: 148 LFEYMSENDTSNEKNTIVFKLHVLCERGGPRLTVKTNELKWLPNGSELPLETKPDSNPSS 207
+ N +++ CE G R + L L K +
Sbjct: 81 ---------SKNCDTDMLYSRDCDCEAGCARCVIN------------LSLHAKCTTEEIM 119
Query: 208 KPRTYTSFSSSQDLLPEFSNNPI-------RPMLDITIARLGPGQEIELEAHAVKGIGKT 260
K D E+ NP+ P+ I +L GQE++ KGI K
Sbjct: 120 KVYA-RDLVVVGDRANEWVGNPVVTDPEGKGPI----ICKLRRGQEVKFNCIVKKGIAKE 174
Query: 261 HAKWSPVATAWYRMLP 276
HAKW+P A + P
Sbjct: 175 HAKWAPTAAVGFEYDP 190
>gi|352682847|ref|YP_004893371.1| DNA-directed RNA polymerase subunit D [Thermoproteus tenax Kra 1]
gi|350275646|emb|CCC82293.1| DNA-directed RNA polymerase subunit D [Thermoproteus tenax Kra 1]
Length = 281
Score = 78.2 bits (191), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 60/206 (29%), Positives = 93/206 (45%), Gaps = 42/206 (20%)
Query: 94 GIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRLGLIPIIVDPRLFEYMS 153
G ++ N+ RR +I+E+P A+++V+I NNTS + DE+LAHR+GLIP+ F +
Sbjct: 20 GAKPSLVNSIRRAVISEVPVFAVDQVIIINNTSSMYDEMLAHRIGLIPLTTPLGEFPKIE 79
Query: 154 ENDTSNEKNTIVFKLHVLCERGGPRLTVKTNELKWLPNGSELPLETKPDSNPSSKPRTYT 213
E CE G L + +E + Y
Sbjct: 80 E-----------------CESG-------------LVDPAECTVRLTLQVTAEEARTVYA 109
Query: 214 SFSSSQDLLPEFSN-NPIRPMLDITIARLGPGQEIELEAHAVKGIGKTHAKWSPVATAWY 272
DL+ E P+ P ++ I +L GQ I +EA+A G + HAKW A Y
Sbjct: 110 G-----DLISEHPGVKPVYP--EMPIVKLAKGQSISIEAYARLGRAREHAKWQ-AGLATY 161
Query: 273 RMLPEIVLLEDVEDEDAEKLVK-TCP 297
P++ +++D DE+ K+ K CP
Sbjct: 162 YYFPKVTIVKD--DENCLKICKNVCP 185
>gi|326469671|gb|EGD93680.1| RNA polymerase II subunit 3 [Trichophyton tonsurans CBS 112818]
gi|326478798|gb|EGE02808.1| RNA polymerase II subunit 3 [Trichophyton equinum CBS 127.97]
Length = 351
Score = 77.8 bits (190), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 60/196 (30%), Positives = 87/196 (44%), Gaps = 37/196 (18%)
Query: 88 MEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRLGLIPIIVDPR 147
++F L +D A AN+FRR ++AE+PT+AI+ V I NTSV+ DE ++HRLGLIP+
Sbjct: 25 VDFRLSSVDLAFANSFRRTILAEIPTVAIDVVEIEVNTSVLPDEFISHRLGLIPLC---- 80
Query: 148 LFEYMSENDTSNEKNTIVFKLHVLCERGGPRLTVKTNELKWLPNGSELPLETKPDSNPSS 207
+ N +++ CE G R + L L K +
Sbjct: 81 ---------SKNCDTDMLYSRDCDCEAGCARCVIN------------LSLHAKCTTEDIM 119
Query: 208 KPRTYTSFSSSQDLLPEFSNNPI-------RPMLDITIARLGPGQEIELEAHAVKGIGKT 260
K D E+ NP+ P+ I +L GQE++ KGI K
Sbjct: 120 KVYA-RDLVVVGDRANEWVGNPVVTDPEGKGPI----ICKLRRGQEVKFNCIVKKGIAKE 174
Query: 261 HAKWSPVATAWYRMLP 276
HAKW+P A + P
Sbjct: 175 HAKWAPTAAVGFEYDP 190
>gi|45358885|ref|NP_988442.1| DNA-directed RNA polymerase subunit D [Methanococcus maripaludis
S2]
gi|45047751|emb|CAF30878.1| DNA-directed RNA polymerase, subunit D [Methanococcus maripaludis
S2]
Length = 180
Score = 77.8 bits (190), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 61/201 (30%), Positives = 90/201 (44%), Gaps = 56/201 (27%)
Query: 98 AIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRLGLIPIIVDPRLFEYMSENDT 157
+ ++A RRI+I+E+PT AIE V NTS + DEVLAHRLGLIPI
Sbjct: 10 SFSSALRRIMISEVPTYAIENVYFYENTSSMYDEVLAHRLGLIPI--------------- 54
Query: 158 SNEKNTIVFKLHVLCERGGPRLTVKTNELKWLPNGSELPLETKPDSNPSSKPRTYTSFSS 217
+G P +G E+ + T P + Y+S
Sbjct: 55 ----------------KGVPV------------SGDEVIVLTISKEGPCT---VYSSDLK 83
Query: 218 SQDLLPEFSNNPIRPMLDITIARLGPGQEIELEAHAVKGIGKTHAKWSPVATAWYRMLPE 277
S+ P F N P I +L Q++ELE A+ G GK HAKW P ++ ++ +
Sbjct: 84 SESGEPAFENIP--------IVKLAEDQKLELETEALVGTGKIHAKWQPCNASYKQISND 135
Query: 278 IV--LLEDVEDEDAEKLVKTC 296
V +E + DAE ++++
Sbjct: 136 EVEFKIESFGNMDAEDIIRSS 156
>gi|19075824|ref|NP_588324.1| RNA polymerase II subunit 3 [Schizosaccharomyces pombe 972h-]
gi|13124820|sp|P37382.2|RPB3_SCHPO RecName: Full=DNA-directed RNA polymerase II subunit RPB3;
Short=RNA polymerase II subunit 3; Short=RNA polymerase
II subunit B3; AltName: Full=DNA-directed RNA polymerase
II 33 kDa polypeptide
gi|256599717|pdb|3H0G|C Chain C, Rna Polymerase Ii From Schizosaccharomyces Pombe
gi|256599729|pdb|3H0G|O Chain O, Rna Polymerase Ii From Schizosaccharomyces Pombe
gi|2465184|dbj|BAA22566.1| polymerase II third largest subunit (subunit 3)
[Schizosaccharomyces pombe]
gi|3790255|emb|CAA21444.1| RNA polymerase II subunit 3 [Schizosaccharomyces pombe]
Length = 297
Score = 77.8 bits (190), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 64/206 (31%), Positives = 98/206 (47%), Gaps = 34/206 (16%)
Query: 77 RVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHR 136
+ + ++K+ ++F L A+AN+ RR+++AE+PT+AI+ V I NTSV+ DE LAHR
Sbjct: 6 HITIRNISKNSVDFVLTNTSLAVANSLRRVVLAEIPTVAIDLVEINVNTSVMPDEFLAHR 65
Query: 137 LGLIPIIVDPRLFEYMSENDTSNEKN----TIVFKLHVLCERGGPRLTVKTNELKWLPNG 192
LG+IP+ D+SN + + + C++ P+ +V
Sbjct: 66 LGMIPL-------------DSSNIDEPPPVGLEYTRNCDCDQYCPKCSV----------- 101
Query: 193 SELPLETKPDSNPSSK--PRTYTSFSSSQDLLPEFSNNPIRPMLDITIARLGPGQEIELE 250
EL L K + + R S+S P ++ R L I +L QEI L
Sbjct: 102 -ELFLNAKCTGEGTMEIYARDLVVSSNSSLGHPILADPKSRGPL---ICKLRKEQEISLR 157
Query: 251 AHAVKGIGKTHAKWSPVATAWYRMLP 276
A KGI K HAKWSP + + P
Sbjct: 158 CIAKKGIAKEHAKWSPTSAVAFEYDP 183
>gi|327303580|ref|XP_003236482.1| RNA polymerase II subunit 3 [Trichophyton rubrum CBS 118892]
gi|326461824|gb|EGD87277.1| RNA polymerase II subunit 3 [Trichophyton rubrum CBS 118892]
Length = 351
Score = 77.8 bits (190), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 60/196 (30%), Positives = 87/196 (44%), Gaps = 37/196 (18%)
Query: 88 MEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRLGLIPIIVDPR 147
++F L +D A AN+FRR ++AE+PT+AI+ V I NTSV+ DE ++HRLGLIP+
Sbjct: 25 VDFRLSSVDLAFANSFRRTILAEIPTVAIDVVEIEVNTSVLPDEFISHRLGLIPLC---- 80
Query: 148 LFEYMSENDTSNEKNTIVFKLHVLCERGGPRLTVKTNELKWLPNGSELPLETKPDSNPSS 207
+ N +++ CE G R + L L K +
Sbjct: 81 ---------SKNCDTDMLYSRDCDCEAGCARCVIN------------LSLHAKCTTEEIM 119
Query: 208 KPRTYTSFSSSQDLLPEFSNNPI-------RPMLDITIARLGPGQEIELEAHAVKGIGKT 260
K D E+ NP+ P+ I +L GQE++ KGI K
Sbjct: 120 KVYA-RDLVVVGDRANEWVGNPVVTDPEGKGPI----ICKLRRGQEVKFNCIVKKGIAKE 174
Query: 261 HAKWSPVATAWYRMLP 276
HAKW+P A + P
Sbjct: 175 HAKWAPTAAVGFEYDP 190
>gi|212223251|ref|YP_002306487.1| DNA-directed RNA polymerase subunit D [Thermococcus onnurineus NA1]
gi|212008208|gb|ACJ15590.1| DNA-directed RNA polymerase, subunit D [Thermococcus onnurineus
NA1]
Length = 260
Score = 77.8 bits (190), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 63/210 (30%), Positives = 97/210 (46%), Gaps = 45/210 (21%)
Query: 77 RVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHR 136
+ ++ +D ++F + GID ANA RR ++AE+PT A+++V N S + DE++AHR
Sbjct: 4 KFRILEKREDSIKFIVEGIDIPFANALRRTILAEVPTFAVDEVEFFENDSALFDEIIAHR 63
Query: 137 LGLIPIIVDPRLFEYMSENDTSNEKNTIVFKLHVLCERGGPRLTVKTNELKWLPNGSELP 196
L +IP+ E S + + T+ L E GP + V + +LK G
Sbjct: 64 LAMIPLTTP---VERFSLDALELDDYTVTLSL----EAEGPGM-VYSGDLKSDDEG---- 111
Query: 197 LETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPMLDITIARLGPGQEIELEAHAVKG 256
KP +NP +I I +L GQ + L A+A G
Sbjct: 112 --VKP-ANP-----------------------------NIPIVKLAEGQNLTLNAYAKLG 139
Query: 257 IGKTHAKWSPVATAWYRMLPEIVLLEDVED 286
GK HAKW P +Y+ L +I + +DV D
Sbjct: 140 RGKDHAKWQP-GFVYYKYLTKIHVSKDVPD 168
>gi|1834323|dbj|BAA09316.1| RNA polymerase II subunit 3 [Schizosaccharomyces pombe]
Length = 296
Score = 77.4 bits (189), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 64/200 (32%), Positives = 96/200 (48%), Gaps = 34/200 (17%)
Query: 83 LTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRLGLIPI 142
++K+ ++F L A+AN+ RR+++AE+PT+AI+ V I NTSV+ DE LAHRLG+IP+
Sbjct: 12 ISKNSVDFVLTNTSLAVANSLRRVVLAEIPTVAIDLVEINVNTSVMPDEFLAHRLGMIPL 71
Query: 143 IVDPRLFEYMSENDTSNEKN----TIVFKLHVLCERGGPRLTVKTNELKWLPNGSELPLE 198
D+SN + + + C++ P+ +V EL L
Sbjct: 72 -------------DSSNIDEPPPVGLEYTRNCDCDQYCPKCSV------------ELFLN 106
Query: 199 TKPDSNPSSK--PRTYTSFSSSQDLLPEFSNNPIRPMLDITIARLGPGQEIELEAHAVKG 256
K + + R S+S P ++ R L I +L QEI L A KG
Sbjct: 107 AKCTGEGTMEIYARDLVVSSNSSLGHPILADPKSRGPL---ICKLRKEQEISLRCIAKKG 163
Query: 257 IGKTHAKWSPVATAWYRMLP 276
I K HAKWSP + + P
Sbjct: 164 IAKEHAKWSPTSAVAFEYDP 183
>gi|342882719|gb|EGU83319.1| hypothetical protein FOXB_06170 [Fusarium oxysporum Fo5176]
Length = 340
Score = 77.4 bits (189), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 61/209 (29%), Positives = 91/209 (43%), Gaps = 43/209 (20%)
Query: 77 RVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHR 136
+V++ ++F+L + A ANA RRI+ AE+PT+AI+ V I N+SV+ DE +AHR
Sbjct: 19 QVKISAADHTHVDFELSKTNLAFANAVRRIIQAEVPTIAIDLVEIETNSSVLADEFIAHR 78
Query: 137 LGLIPI---IVDPRLFEYMSENDTSNEKNTIVFKLHVLCERG------GPRLTVKTNELK 187
LGLIP+ VD + + + E+ ++ LH C L V +
Sbjct: 79 LGLIPLDSKGVDELNYSRDCDCEQYCEQCSVTLTLHAKCTSDEIMKVYARDLVVDGRHM- 137
Query: 188 WLPNGSELPLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPMLDITIARLGPGQEI 247
NG P+ T P+ IA+L GQE+
Sbjct: 138 ---NGVGSPVITDPEG------------------------------YGCLIAKLRKGQEL 164
Query: 248 ELEAHAVKGIGKTHAKWSPVATAWYRMLP 276
++ A KGI K HAKW P + + P
Sbjct: 165 KISCIAKKGIAKEHAKWMPTSAVGFEYDP 193
>gi|302509162|ref|XP_003016541.1| hypothetical protein ARB_04830 [Arthroderma benhamiae CBS 112371]
gi|291180111|gb|EFE35896.1| hypothetical protein ARB_04830 [Arthroderma benhamiae CBS 112371]
Length = 361
Score = 77.4 bits (189), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 60/196 (30%), Positives = 87/196 (44%), Gaps = 37/196 (18%)
Query: 88 MEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRLGLIPIIVDPR 147
++F L +D A AN+FRR ++AE+PT+AI+ V I NTSV+ DE ++HRLGLIP+
Sbjct: 35 VDFRLSSVDLAFANSFRRTILAEIPTVAIDVVEIEVNTSVLPDEFISHRLGLIPLC---- 90
Query: 148 LFEYMSENDTSNEKNTIVFKLHVLCERGGPRLTVKTNELKWLPNGSELPLETKPDSNPSS 207
+ N +++ CE G R + L L K +
Sbjct: 91 ---------SKNCDTDMLYSRDCDCEAGCARCVIN------------LSLHAKCTTEEIM 129
Query: 208 KPRTYTSFSSSQDLLPEFSNNPI-------RPMLDITIARLGPGQEIELEAHAVKGIGKT 260
K D E+ NP+ P+ I +L GQE++ KGI K
Sbjct: 130 KVYA-RDLVVVGDRANEWVGNPVVTDPEGKGPI----ICKLRRGQEVKFNCIVKKGIAKE 184
Query: 261 HAKWSPVATAWYRMLP 276
HAKW+P A + P
Sbjct: 185 HAKWAPTAAVGFEYDP 200
>gi|390960760|ref|YP_006424594.1| DNA-directed RNA polymerase subunit D [Thermococcus sp. CL1]
gi|390519068|gb|AFL94800.1| DNA-directed RNA polymerase subunit D [Thermococcus sp. CL1]
Length = 260
Score = 77.4 bits (189), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 61/210 (29%), Positives = 97/210 (46%), Gaps = 45/210 (21%)
Query: 77 RVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHR 136
+ +++ +D ++F + GID ANA RR ++AE+PT A+++V N S + DE++AHR
Sbjct: 4 KFQILEKREDSIKFIVEGIDVPFANALRRTILAEVPTFAVDEVEFFENDSALFDEIIAHR 63
Query: 137 LGLIPIIVDPRLFEYMSENDTSNEKNTIVFKLHVLCERGGPRLTVKTNELKWLPNGSELP 196
L +IP+ F S + + T+ L E GP + V + +L+
Sbjct: 64 LAMIPLTTPAERF---SLDALELDDYTVTLSL----EAEGPGM-VYSGDLR--------- 106
Query: 197 LETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPMLDITIARLGPGQEIELEAHAVKG 256
S+ + KP NP DI I +L GQ + A+A G
Sbjct: 107 -----SSDEAIKP-----------------ANP-----DIPIVKLAEGQRLTFNAYARLG 139
Query: 257 IGKTHAKWSPVATAWYRMLPEIVLLEDVED 286
GK HAKW P +Y+ L I + ++V D
Sbjct: 140 RGKDHAKWQP-GFVYYKYLTRIHVSKEVPD 168
>gi|50555259|ref|XP_505038.1| YALI0F05566p [Yarrowia lipolytica]
gi|49650908|emb|CAG77845.1| YALI0F05566p [Yarrowia lipolytica CLIB122]
Length = 314
Score = 77.4 bits (189), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 59/182 (32%), Positives = 89/182 (48%), Gaps = 30/182 (16%)
Query: 98 AIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRLGLIPI-IVDPRLFEYMSE-- 154
+AN+ RR+++AE+PT+AI+ V I+ NTSV+ DE ++HRLGLIP+ D EY +
Sbjct: 21 TLANSLRRVMLAEIPTLAIDLVEISTNTSVLADEFISHRLGLIPLDSQDVNDLEYSRDCV 80
Query: 155 NDTSNEKNTIVFKLHVLCERGGPRLTVKTNELKWLPNGSELPLETKPDSNPSSKPRTYTS 214
D +K ++V L C G + + + +L + T P+ KP YT
Sbjct: 81 CDEYCDKCSVVLMLDATC-TGDDTMDIYSRDLM---------VHTTPERPELGKP-IYT- 128
Query: 215 FSSSQDLLPEFSNNPIRPMLDITIARLGPGQEIELEAHAVKGIGKTHAKWSPVATAWYRM 274
+P + I I +L Q + ++ A KGI K HAKWSP A +
Sbjct: 129 -------------DPAKK--GILICKLRKNQSLRIKCIAKKGIAKEHAKWSPCAAIGFEY 173
Query: 275 LP 276
P
Sbjct: 174 DP 175
>gi|14591408|ref|NP_143488.1| DNA-directed RNA polymerase subunit D [Pyrococcus horikoshii OT3]
gi|3258066|dbj|BAA30749.1| 261aa long hypothetical DNA-directed RNA polymerase subunit D
[Pyrococcus horikoshii OT3]
Length = 261
Score = 77.4 bits (189), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 57/195 (29%), Positives = 88/195 (45%), Gaps = 44/195 (22%)
Query: 77 RVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHR 136
++++++ T+D + F L G+ A ANA RR ++ E+PT A+++V N S + DE++AHR
Sbjct: 5 KIKILKKTEDSITFILEGVSVAFANALRRTILGEVPTFAVDEVEFYENDSALFDEIIAHR 64
Query: 137 LGLIPIIVDPRLFEYMSENDTSNEKNTIVFKLHVLCERGGPRLTVKTNELKWLPNGSELP 196
L +IP+ FE + + T+ L E GP + V + +LK
Sbjct: 65 LAMIPLKTPTDRFEL---DALELDDYTVTLSL----EAEGPGI-VYSGDLK--------- 107
Query: 197 LETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPMLDITIARLGPGQEIELEAHAVKG 256
+P KP T DI I +L GQ + A+A G
Sbjct: 108 -----SDDPDVKPVT----------------------PDIPIVKLAKGQRLVFNAYAKLG 140
Query: 257 IGKTHAKWSPVATAW 271
GK HAKW P T +
Sbjct: 141 RGKDHAKWQPGFTYY 155
>gi|57641438|ref|YP_183916.1| DNA-directed RNA polymerase subunit D [Thermococcus kodakarensis
KOD1]
gi|73917880|sp|Q5JJF4.1|RPOD_PYRKO RecName: Full=DNA-directed RNA polymerase subunit D
gi|57159762|dbj|BAD85692.1| DNA-directed RNA polymerase, subunit D [Thermococcus kodakarensis
KOD1]
Length = 259
Score = 77.4 bits (189), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 61/201 (30%), Positives = 93/201 (46%), Gaps = 45/201 (22%)
Query: 86 DDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRLGLIPIIVD 145
D ++F + G+D ANA RR +++E+PT A+++V N S + DE++AHRL +IP+
Sbjct: 12 DSIKFIVSGVDVPFANALRRTILSEVPTFAVDEVEFLENDSALFDEIIAHRLAMIPLTTP 71
Query: 146 PRLFEYMSENDTSNEKNTIVFKLHVLCERGGPRLTVKTNELKWLPNGSELPLETKPDSNP 205
E S + + T+ L E GP + V + +LK
Sbjct: 72 ---HERFSLDALELDDYTVTLSL----EAEGPGM-VYSGDLK------------------ 105
Query: 206 SSKPRTYTSFSSSQDLLPEFSNNPIRPMLDITIARLGPGQEIELEAHAVKGIGKTHAKWS 265
SS D+ P NP +I I +L GQ + A+A G GK HAKW
Sbjct: 106 ----------SSDGDVKP---ANP-----NIPIVKLAEGQRLTFNAYARLGRGKDHAKWQ 147
Query: 266 PVATAWYRMLPEIVLLEDVED 286
P +Y+ L +I + +DV D
Sbjct: 148 P-GFVYYKYLTKIHVSKDVPD 167
>gi|13124813|sp|O59303.2|RPOD_PYRHO RecName: Full=DNA-directed RNA polymerase subunit D
Length = 259
Score = 77.0 bits (188), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 57/195 (29%), Positives = 88/195 (45%), Gaps = 44/195 (22%)
Query: 77 RVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHR 136
++++++ T+D + F L G+ A ANA RR ++ E+PT A+++V N S + DE++AHR
Sbjct: 3 KIKILKKTEDSITFILEGVSVAFANALRRTILGEVPTFAVDEVEFYENDSALFDEIIAHR 62
Query: 137 LGLIPIIVDPRLFEYMSENDTSNEKNTIVFKLHVLCERGGPRLTVKTNELKWLPNGSELP 196
L +IP+ FE + + T+ L E GP + V + +LK
Sbjct: 63 LAMIPLKTPTDRFEL---DALELDDYTVTLSL----EAEGPGI-VYSGDLK--------- 105
Query: 197 LETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPMLDITIARLGPGQEIELEAHAVKG 256
+P KP T DI I +L GQ + A+A G
Sbjct: 106 -----SDDPDVKPVT----------------------PDIPIVKLAKGQRLVFNAYAKLG 138
Query: 257 IGKTHAKWSPVATAW 271
GK HAKW P T +
Sbjct: 139 RGKDHAKWQPGFTYY 153
>gi|375083505|ref|ZP_09730525.1| DNA-directed RNA polymerase subunit D [Thermococcus litoralis DSM
5473]
gi|374741832|gb|EHR78250.1| DNA-directed RNA polymerase subunit D [Thermococcus litoralis DSM
5473]
Length = 258
Score = 77.0 bits (188), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 59/199 (29%), Positives = 89/199 (44%), Gaps = 45/199 (22%)
Query: 77 RVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHR 136
+++++ + + F L G+D A ANA RR +I E+PT A+++V N S + DE++AHR
Sbjct: 2 QIKILEKRDNAIRFILEGVDIAFANALRRTIIGEVPTFAVDEVEFYENDSALFDEIIAHR 61
Query: 137 LGLIPIIVDPRLFEYMSENDTSNEKNTIVFKLHVLCERGGPRLTVKTNELKWLPNGSELP 196
L LIP+ FE + + T+ L E GP + + + +LK
Sbjct: 62 LALIPLTTPSDRFEL---DALELDDYTVTLGL----EAEGPAI-IYSGDLK--------- 104
Query: 197 LETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPMLDITIARLGPGQEIELEAHAVKG 256
+P KP T DI I +L GQ + A+A G
Sbjct: 105 -----SDDPDVKPVT----------------------PDIPIVKLAEGQRLVFNAYAKLG 137
Query: 257 IGKTHAKWSPVATAWYRML 275
GK HAKW P A+Y+ L
Sbjct: 138 RGKDHAKWQP-GFAYYKYL 155
>gi|254167792|ref|ZP_04874642.1| RNA polymerase Rpb3/Rpb11 dimerisation domain [Aciduliprofundum
boonei T469]
gi|289597072|ref|YP_003483768.1| RNA polymerase insert [Aciduliprofundum boonei T469]
gi|197623320|gb|EDY35885.1| RNA polymerase Rpb3/Rpb11 dimerisation domain [Aciduliprofundum
boonei T469]
gi|289534859|gb|ADD09206.1| RNA polymerase insert [Aciduliprofundum boonei T469]
Length = 273
Score = 77.0 bits (188), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 66/238 (27%), Positives = 109/238 (45%), Gaps = 50/238 (21%)
Query: 80 VIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVL------------IANNTSV 127
++ L ++F++ GI ++ANA RR LI ++P +AI KV+ + ++++
Sbjct: 5 ILELQDRYIKFEIKGITPSVANALRRTLINDIPKLAIHKVIFHHGQIRDMEGNVYDSSTP 64
Query: 128 IQDEVLAHRLGLIPIIVDPRLFEYMSENDTSNEKNTIVFKLHVLCERGGPRLTVKTNELK 187
+ DE++AHRLGLIP+ D + ++ E D ++ + + + GP TV + +L
Sbjct: 65 LFDEIIAHRLGLIPLPTDLNM-KFRDECDHPPDEGCPLCTVTYTLNKHGPA-TVYSGDL- 121
Query: 188 WLPNGSELPLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPMLDITIARLGPGQEI 247
+P G E P+ P+ I I +L Q I
Sbjct: 122 -IPVGDE-------------------------------KFKPVDPL--IPIVKLKEHQAI 147
Query: 248 ELEAHAVKGIGKTHAKWSPVATAWYRMLPEIVLLEDVEDEDAEKLVKTCPVNVFDIED 305
LEA A+ G K HAKW + Y+ EI + + E EK+ K+CP NV +D
Sbjct: 148 LLEAEAIMGTAKEHAKWQVTSGVSYKYHREIK-VNKKDSELWEKVKKSCPKNVIKEDD 204
>gi|150401521|ref|YP_001325287.1| RNA polymerase insert [Methanococcus aeolicus Nankai-3]
gi|150014224|gb|ABR56675.1| RNA polymerase insert [Methanococcus aeolicus Nankai-3]
Length = 197
Score = 77.0 bits (188), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 58/192 (30%), Positives = 90/192 (46%), Gaps = 54/192 (28%)
Query: 86 DDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRLGLIPIIVD 145
+ ++F + G + ++A RRI+++ +PT AIE V N+S + DE+LAHRL LIPI
Sbjct: 14 ETLKFTIGGAPISFSSALRRIMVSSVPTYAIENVYFYENSSSMYDEILAHRLALIPITGK 73
Query: 146 PRLFEYMSENDTSNEKNTIVFKLHVLCERGGPRLTVKTNELKWLPNGSELPLETKPDSNP 205
P + S+E V + ++ E GP TV + +L+
Sbjct: 74 PVI---------SDE----VVRFSIMKE--GP-CTVYSADLE------------------ 99
Query: 206 SSKPRTYTSFSSSQDLLPEFSNNPIRPMLDITIARLGPGQEIELEAHAVKGIGKTHAKWS 265
S D + F N P I +L GQ++ELE A+ G+GK HAKW
Sbjct: 100 -----------SESDSMVAFDNIP--------IVKLKEGQKLELECEALVGVGKNHAKWQ 140
Query: 266 PVATAWYRMLPE 277
P A Y+++ +
Sbjct: 141 P-CNASYKLIKD 151
>gi|150399384|ref|YP_001323151.1| RNA polymerase insert [Methanococcus vannielii SB]
gi|150012087|gb|ABR54539.1| RNA polymerase insert [Methanococcus vannielii SB]
Length = 195
Score = 77.0 bits (188), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 60/201 (29%), Positives = 90/201 (44%), Gaps = 56/201 (27%)
Query: 98 AIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRLGLIPIIVDPRLFEYMSENDT 157
+ ++A RR++I+E+PT AIE V NTS + DEVLAHRLGLIP+ P
Sbjct: 25 SFSSALRRLMISEVPTYAIENVYFYENTSSMYDEVLAHRLGLIPVKGVP----------- 73
Query: 158 SNEKNTIVFKLHVLCERGGPRLTVKTNELKWLPNGSELPLETKPDSNPSSKPRTYTSFSS 217
+ +VF L + GP TV +++LK E+ E P
Sbjct: 74 VSGDEVVVFTLS----KEGP-CTVYSSDLK--SEAGEIAFENIP---------------- 110
Query: 218 SQDLLPEFSNNPIRPMLDITIARLGPGQEIELEAHAVKGIGKTHAKWSPVATAWYRMLPE 277
I +L GQ++E EA A+ G GK HAKW P + ++ +
Sbjct: 111 --------------------IVKLAEGQKLEFEAEALVGTGKFHAKWQPCNVVYKQISND 150
Query: 278 IV--LLEDVEDEDAEKLVKTC 296
V +E + DAE ++++
Sbjct: 151 EVEFTIESFGNMDAEDIIRSS 171
>gi|380478665|emb|CCF43467.1| RNA polymerase Rpb3/RpoA insert domain-containing protein
[Colletotrichum higginsianum]
Length = 339
Score = 77.0 bits (188), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 63/200 (31%), Positives = 94/200 (47%), Gaps = 46/200 (23%)
Query: 88 MEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRLGLIPIIVDPR 147
+ FDL D + AN+ RR++ AE+P +AI+ V I NTSV+ DE +AHRLGLIP+
Sbjct: 27 VNFDLSNCDLSFANSLRRVIQAEVPVIAIDLVEIEANTSVLADEFIAHRLGLIPL----- 81
Query: 148 LFEYMSENDTSNEKNTIVFKLHVLCERGGPRLTVKTNELKWLPNGSELPLETKPDSNPSS 207
S + N++++ CE+ +VK L L + S+ +
Sbjct: 82 ---------QSKDVNSLLYTRDCDCEQYCDNCSVK------------LTLHARCSSDETM 120
Query: 208 KPRTYTSFSSSQDLLPE------FSNNPIRPMLD-----ITIARLGPGQEIELEAHAVKG 256
K Y S DL+ + NP+ +LD I +L GQE+++ A KG
Sbjct: 121 K--VYAS-----DLIVDSFRQNGTVGNPV--ILDPEGQGSLICKLRKGQELKISCIAKKG 171
Query: 257 IGKTHAKWSPVATAWYRMLP 276
I K HAKW P + + P
Sbjct: 172 IAKEHAKWMPTSAVGFEYDP 191
>gi|341582027|ref|YP_004762519.1| DNA-directed RNA polymerase subunit D [Thermococcus sp. 4557]
gi|340809685|gb|AEK72842.1| DNA-directed RNA polymerase subunit D [Thermococcus sp. 4557]
Length = 260
Score = 77.0 bits (188), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 59/210 (28%), Positives = 99/210 (47%), Gaps = 45/210 (21%)
Query: 77 RVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHR 136
+ +++ +D ++F + G+D ANA RR ++A++PT A+++V N S + DE++AHR
Sbjct: 4 KFQILEKREDSIKFIVEGVDVPFANALRRTILADVPTFAVDEVEFFENDSALFDEIIAHR 63
Query: 137 LGLIPIIVDPRLFEYMSENDTSNEKNTIVFKLHVLCERGGPRLTVKTNELKWLPNGSELP 196
+G+IP+ F S + ++ T+ L E GP + V + +LK
Sbjct: 64 VGMIPLTTPHERF---SLDSLELDEYTVTLSL----EAEGPGM-VYSGDLK--------- 106
Query: 197 LETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPMLDITIARLGPGQEIELEAHAVKG 256
SS + + P NP +I I +L GQ + A+A G
Sbjct: 107 -------------------SSDEGVKP---ANP-----NIPIVKLAEGQRLTFNAYAKLG 139
Query: 257 IGKTHAKWSPVATAWYRMLPEIVLLEDVED 286
GK HAKW P +Y+ L I + ++V D
Sbjct: 140 RGKDHAKWQP-GFVYYKYLTRIHVSKEVPD 168
>gi|310794498|gb|EFQ29959.1| RNA polymerase Rpb3/RpoA insert domain-containing protein
[Glomerella graminicola M1.001]
Length = 339
Score = 77.0 bits (188), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 63/200 (31%), Positives = 94/200 (47%), Gaps = 46/200 (23%)
Query: 88 MEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRLGLIPIIVDPR 147
+ FDL D + AN+ RR++ AE+P +AI+ V I NTSV+ DE +AHRLGLIP+
Sbjct: 27 VNFDLSNCDLSFANSLRRVIQAEVPVIAIDLVEIEANTSVLADEFIAHRLGLIPL----- 81
Query: 148 LFEYMSENDTSNEKNTIVFKLHVLCERGGPRLTVKTNELKWLPNGSELPLETKPDSNPSS 207
S + N++++ CE+ +VK L L + S+ +
Sbjct: 82 ---------QSKDVNSLLYTRDCDCEQYCDNCSVK------------LTLHARCSSDDTM 120
Query: 208 KPRTYTSFSSSQDLLPE------FSNNPIRPMLD-----ITIARLGPGQEIELEAHAVKG 256
K Y S DL+ + NP+ +LD I +L GQE+++ A KG
Sbjct: 121 K--VYAS-----DLIVDSFRQNGTVGNPV--ILDPEGQGSLICKLRKGQELKISCIAKKG 171
Query: 257 IGKTHAKWSPVATAWYRMLP 276
I K HAKW P + + P
Sbjct: 172 IAKEHAKWMPTSAVGFEYDP 191
>gi|225684781|gb|EEH23065.1| DNA-directed RNA polymerase II subunit RPB3 [Paracoccidioides
brasiliensis Pb03]
Length = 283
Score = 76.6 bits (187), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 59/194 (30%), Positives = 88/194 (45%), Gaps = 33/194 (17%)
Query: 88 MEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRLGLIPIIVDPR 147
++F L +D A AN+ RR ++AE+PT+AI+ V I +NTSV+ DE +AHRLGLIP+
Sbjct: 26 VDFRLSSVDLAFANSLRRTMLAEIPTVAIDVVEIESNTSVLPDEFVAHRLGLIPL----- 80
Query: 148 LFEYMSENDTSNEKNTIVFKLHVLCERGGPRLTVKTNELKWLPNGSELPLETKPDSNPSS 207
++ N + + CE G R V L L +
Sbjct: 81 --------NSKNCDADMDYSRDCDCEGGCARCVVM------------LSLNVRCTGEDVM 120
Query: 208 KPRTYTSFSSSQDLLPEFSNNPIRPMLDI-----TIARLGPGQEIELEAHAVKGIGKTHA 262
K D E+ +P+ + D I +L GQE+++ A KGI K H+
Sbjct: 121 KVYA-RDLIIVGDRANEWVGSPV--ITDAEGKGPVICKLSRGQELKMTCIAKKGIAKEHS 177
Query: 263 KWSPVATAWYRMLP 276
KW+P A + P
Sbjct: 178 KWAPTAAVGFEYDP 191
>gi|386876610|ref|ZP_10118709.1| RNA polymerase Rpb3/Rpb11 dimerization domain protein [Candidatus
Nitrosopumilus salaria BD31]
gi|386805572|gb|EIJ65092.1| RNA polymerase Rpb3/Rpb11 dimerization domain protein [Candidatus
Nitrosopumilus salaria BD31]
Length = 221
Score = 76.6 bits (187), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 60/196 (30%), Positives = 90/196 (45%), Gaps = 40/196 (20%)
Query: 78 VEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRL 137
+EVI + L G+ ANA RR+ + +P AI+ V I N+SV+ DE LAHRL
Sbjct: 13 LEVISKDNHKISIKLKGVPLQYANALRRVCLNGVPVFAIDTVDIVENSSVLPDEGLAHRL 72
Query: 138 GLIPIIVDPRLFEYMSENDTSNEKNTIVFKLHVLCERGGPRL--TVKTNELKWLPNGSEL 195
GLIP+ D F S+ + +E K+ ++ + G + T+ +NEL
Sbjct: 73 GLIPLKTDLARFNEPSKCECQSETGCSNCKVMLVLDSGDSDVTRTILSNEL--------- 123
Query: 196 PLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPMLD-ITIARLGPGQEIELEAHAV 254
SS+D + ++P+ D I I +L PGQ I++E +A
Sbjct: 124 ---------------------SSED-------DTVKPVSDKIPIVQLAPGQRIKVECYAR 155
Query: 255 KGIGKTHAKWSPVATA 270
G G HAKW+ A
Sbjct: 156 LGRGTEHAKWNATNIA 171
>gi|254167082|ref|ZP_04873935.1| RNA polymerase Rpb3/Rpb11 dimerisation domain [Aciduliprofundum
boonei T469]
gi|197623938|gb|EDY36500.1| RNA polymerase Rpb3/Rpb11 dimerisation domain [Aciduliprofundum
boonei T469]
Length = 273
Score = 76.6 bits (187), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 65/230 (28%), Positives = 106/230 (46%), Gaps = 50/230 (21%)
Query: 88 MEFDLIGIDAAIANAFRRILIAELPTMAIEKVL------------IANNTSVIQDEVLAH 135
++F++ GI ++ANA RR LI ++P +AI KV+ + ++++ + DE++AH
Sbjct: 13 IKFEIKGITPSVANALRRTLINDIPKLAIHKVIFHHGQIRDMEGNVYDSSTPLFDEIIAH 72
Query: 136 RLGLIPIIVDPRLFEYMSENDTSNEKNTIVFKLHVLCERGGPRLTVKTNELKWLPNGSEL 195
RLGLIP+ D + ++ E D ++ + + + GP TV + +L +P G E
Sbjct: 73 RLGLIPLPTDLNM-KFRDECDHPPDEGCPLCTVTYTLNKHGPA-TVYSGDL--IPVGDE- 127
Query: 196 PLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPMLDITIARLGPGQEIELEAHAVK 255
P+ P+ I I +L Q I LEA A+
Sbjct: 128 ------------------------------KFKPVDPL--IPIVKLKEHQAILLEAEAIM 155
Query: 256 GIGKTHAKWSPVATAWYRMLPEIVLLEDVEDEDAEKLVKTCPVNVFDIED 305
G K HAKW + Y+ EI + + E EK+ K+CP NV +D
Sbjct: 156 GTAKEHAKWQVTSGVSYKYHREIK-VNKKDSELWEKVKKSCPKNVIKEDD 204
>gi|336371374|gb|EGN99713.1| hypothetical protein SERLA73DRAFT_88301 [Serpula lacrymans var.
lacrymans S7.3]
gi|336384130|gb|EGO25278.1| DNA-directed RNA polymerase II, subunit 3 [Serpula lacrymans var.
lacrymans S7.9]
Length = 400
Score = 76.6 bits (187), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 60/212 (28%), Positives = 97/212 (45%), Gaps = 34/212 (16%)
Query: 78 VEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRL 137
V + + KD + F L +D A AN+ RR ++A++PT+AI+ V I NT+V+ DE +AHRL
Sbjct: 11 VRIREVKKDRVNFVLENVDLAFANSVRRAVMADIPTIAIDIVEIEANTTVLPDEFIAHRL 70
Query: 138 GLIPIIVDPRLFEYMSENDTSNEKNTIVFKLHVLCERGGP------RLTVKTNELKWLPN 191
G++P++ ++N + I + C G RL V +E +
Sbjct: 71 GMVPLV-------------SANCEEGIRYTRDCTCLSGCQYCSIELRLDVACHENR---- 113
Query: 192 GSELPLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPMLD-------ITIARLGPG 244
+E + TY + + L + N P+ + I ++ G
Sbjct: 114 ----TMEVTSNHLDVVDSHTYADEGEAGEELTKRGENFGHPVGKDDVSLPPVLICKMRKG 169
Query: 245 QEIELEAHAVKGIGKTHAKWSPVATAWYRMLP 276
QE++L A KGI K HAKWSP + + P
Sbjct: 170 QELKLRCIAKKGIAKEHAKWSPCSAVSFEYDP 201
>gi|161527936|ref|YP_001581762.1| RNA polymerase insert [Nitrosopumilus maritimus SCM1]
gi|160339237|gb|ABX12324.1| RNA polymerase insert [Nitrosopumilus maritimus SCM1]
Length = 221
Score = 76.3 bits (186), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 69/232 (29%), Positives = 102/232 (43%), Gaps = 50/232 (21%)
Query: 78 VEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRL 137
+EVI + L G+ ANA RR+ + +P A++ V I N+SV+ DE LAHRL
Sbjct: 13 LEVISKDNQKIALKLKGVPLQYANALRRVCLNGVPVFAVDTVDIIENSSVLPDEGLAHRL 72
Query: 138 GLIPIIVDPRLFEYMSENDTSNEKNTIVFKLHVLCERGGPRL--TVKTNELKWLPNGSEL 195
GLIP+ D F S+ + +E K+ ++ + G + TV +NEL
Sbjct: 73 GLIPLKTDLSRFNEPSKCECQSETGCSNCKVMLVLDSGDSDVTRTVLSNEL--------- 123
Query: 196 PLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPMLD-ITIARLGPGQEIELEAHAV 254
SS+D + I P+ D I I L PGQ I++E +A
Sbjct: 124 ---------------------SSED-------DSITPISDKIPIVELAPGQRIKVECYAR 155
Query: 255 KGIGKTHAKWSPVATAWYRMLPEIVLLEDVEDEDAEKLVKTCPVNVFDIEDI 306
G G HAKW+ +A ML E D+D E+++ + E I
Sbjct: 156 LGRGTEHAKWN---SANVSMLTET-------DKDDERILTVESTGALNPEQI 197
>gi|258565481|ref|XP_002583485.1| DNA-directed RNA polymerase II 45 kDa polypeptide [Uncinocarpus
reesii 1704]
gi|237907186|gb|EEP81587.1| DNA-directed RNA polymerase II 45 kDa polypeptide [Uncinocarpus
reesii 1704]
Length = 345
Score = 75.9 bits (185), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 57/193 (29%), Positives = 90/193 (46%), Gaps = 31/193 (16%)
Query: 88 MEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRLGLIPIIVDPR 147
++F L+ +D A AN+ RR+++ E+PT+AI+ V I +NTSV+ DE +AHRLGLIP+
Sbjct: 25 VDFRLMSVDLAFANSLRRVMLTEVPTVAIDVVEIESNTSVLPDEFIAHRLGLIPLHSKNC 84
Query: 148 LFEYMSENDTSNEKNT----IVFKLHVLCERGGPRLTVKTNELKWLPNGSELPLETKPDS 203
+ + D E I +LH C G + V +L + + + + +
Sbjct: 85 DVDMVYARDCDCEGGCSRCIITLQLHAKCTGEG-VMVVYARDLVVIGDRANEWVGNPVIN 143
Query: 204 NPSSKPRTYTSFSSSQDLLPEFSNNPIRPMLDITIARLGPGQEIELEAHAVKGIGKTHAK 263
+P+ K PI I +L QE+++ KGI K HAK
Sbjct: 144 DPAGK-------------------GPI-------ICKLRRDQEVKMTCTVKKGIAKEHAK 177
Query: 264 WSPVATAWYRMLP 276
W+P A + P
Sbjct: 178 WAPTAAIGFEYDP 190
>gi|346323448|gb|EGX93046.1| RNA polymerase II subunit 3 [Cordyceps militaris CM01]
Length = 364
Score = 75.5 bits (184), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 67/203 (33%), Positives = 94/203 (46%), Gaps = 33/203 (16%)
Query: 77 RVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHR 136
RV+ TK +EF L A AN+ RR++ AE+PT+AIE V I NTSV+ DE +AHR
Sbjct: 29 RVKAADSTK--VEFVLAKTSLAFANSLRRVIQAEVPTVAIELVEIEVNTSVLADEFIAHR 86
Query: 137 LGLIPI---IVDPRLFEYMSENDTSNEKNTIVFKLHVLCERGGPRLTVKTNELKWLPNGS 193
LGLIP+ VD + + D E+ +I LH C + V +L + +G
Sbjct: 87 LGLIPLDSKDVDELNYSRDCDCDHYCEQCSITLTLHAKCTT-DENMKVYARDL--IVDG- 142
Query: 194 ELPLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPMLDITIARLGPGQEIELEAHA 253
R TS + N+P + +A+L QE+ L+ A
Sbjct: 143 ----------------RHATSIGTP------VINDP--DGVGCLLAKLRRDQELRLKCVA 178
Query: 254 VKGIGKTHAKWSPVATAWYRMLP 276
KGI K HAKW P + + P
Sbjct: 179 KKGIAKEHAKWMPTSAVGFEYDP 201
>gi|347523607|ref|YP_004781177.1| DNA-directed RNA polymerase [Pyrolobus fumarii 1A]
gi|343460489|gb|AEM38925.1| DNA-directed RNA polymerase [Pyrolobus fumarii 1A]
Length = 293
Score = 75.5 bits (184), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 57/183 (31%), Positives = 81/183 (44%), Gaps = 24/183 (13%)
Query: 94 GIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRLGLIPIIVDPRLFEYMS 153
G A NA RR +P MAI+ V +N +V+ DE+LAHRLGLIP+ S
Sbjct: 15 GAPLAFVNALRRAAYTMVPVMAIDYVEFIDNNTVLYDEILAHRLGLIPL---------DS 65
Query: 154 ENDTSNEKNTIVFKLHVLCERGGPRLTVKTNELKWLPNGSELPLETKPDSNPSSKPRTYT 213
+ K F+ + G P K+ G L + ++ Y+
Sbjct: 66 REAIKSYKKPEEFQESCIDSSGVP---------KFDEPGCFATLTLEVETGVDEVRMVYS 116
Query: 214 SFSSSQDLLPEFSNNPIRPMLDITIARLGPGQEIELEAHAVKGIGKTHAKWSPVATAWYR 273
S D + P+ P +I I + PGQ + + A+A G GK HAKW PV+ A +R
Sbjct: 117 GDLQSSDP----TVKPVYP--NIPIVLMAPGQRLHVRAYARLGYGKEHAKWFPVSVAAHR 170
Query: 274 MLP 276
LP
Sbjct: 171 YLP 173
>gi|145592521|ref|YP_001154523.1| RNA polymerase, insert [Pyrobaculum arsenaticum DSM 13514]
gi|166229319|sp|A4WNA4.1|RPOD_PYRAR RecName: Full=DNA-directed RNA polymerase subunit D
gi|145284289|gb|ABP51871.1| DNA-directed RNA polymerase, subunit D [Pyrobaculum arsenaticum DSM
13514]
Length = 259
Score = 75.5 bits (184), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 79/268 (29%), Positives = 119/268 (44%), Gaps = 65/268 (24%)
Query: 77 RVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHR 136
RV ++ ++ ++ + G+ ++ N+ RR++I+ELP MAI+ V++ NNTSV+ DE LA R
Sbjct: 3 RVSIVEKSQLFLKAIVEGVPPSLVNSLRRVIISELPVMAIDTVVVVNNTSVMYDEFLAQR 62
Query: 137 LGLIPIIVDPRLFEYMSENDTSNEKNTIVFKLHVLCERGGPRLTVKTNELKWLPNGSELP 196
LGLIP+ E T T G+ L
Sbjct: 63 LGLIPLTTPLHSLPTYEECATGVADPT--------------------------ECGTRLV 96
Query: 197 LETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPMLDITIARLGPGQEIELEAHAVKG 256
L+ D + + T S D++P + DI I +L GQ I +EA+A G
Sbjct: 97 LQVTADGDVTVYSGDLT--SERPDVVPVYK--------DIPIVKLVKGQSIVIEAYAKLG 146
Query: 257 IGKTHAKWSPVATAWYRMLPEIVLLEDVEDEDAEKLVK-TCPVNVFDIEDIGSGKKRATV 315
I K HAKW ATA Y P+++ ++DE ++ K CP D+ED
Sbjct: 147 IAKDHAKWQ-AATASYYYYPKVI----IKDEKCREICKEICP----DLED---------- 187
Query: 316 AQPRACTL-----CRECLRCG--EEWEK 336
P CT C++ + G EWEK
Sbjct: 188 --PVKCTFNKAWTCKDLCKGGLDVEWEK 213
>gi|337283749|ref|YP_004623223.1| DNA-directed RNA polymerase subunit D [Pyrococcus yayanosii CH1]
gi|334899683|gb|AEH23951.1| DNA-directed RNA polymerase subunit D [Pyrococcus yayanosii CH1]
Length = 259
Score = 75.5 bits (184), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 58/204 (28%), Positives = 93/204 (45%), Gaps = 49/204 (24%)
Query: 77 RVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHR 136
+VE++ ++ ++F L G+ A ANA RR ++ E+PT A+++V N S + DE++AHR
Sbjct: 3 KVEILEKRENAIKFILEGVSIAFANALRRTILGEVPTFAVDEVEFYENDSALFDEIIAHR 62
Query: 137 LGLIPII--VDPRLFEYMSENDTSNEKNTIVFKLHVLCERGGPRLTVKTNELKWLPNGSE 194
L +IP+ VD + + +D + + + E GP + V + +LK
Sbjct: 63 LAMIPLTTPVDRFALDSLELDD---------YTVTLSLEAEGPGV-VYSGDLK------- 105
Query: 195 LPLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPMLDITIARLGPGQEIELEAHAV 254
+P KP T DI I +L GQ + A+A
Sbjct: 106 -------SDDPDVKPVT----------------------PDIPIVKLAEGQRLVFNAYAK 136
Query: 255 KGIGKTHAKWSPVATAWYRMLPEI 278
G GK HAKW P A+Y+ +I
Sbjct: 137 LGRGKDHAKWQP-GFAYYKYYTKI 159
>gi|1834322|dbj|BAA09315.1| RNA polymerase II subunit 3 [Schizosaccharomyces pombe]
Length = 296
Score = 75.1 bits (183), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 63/205 (30%), Positives = 97/205 (47%), Gaps = 34/205 (16%)
Query: 78 VEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRL 137
+ + +++D ++F L A+AN+ RR+++AE+PT+AI+ V I NTSV+ DE LAHRL
Sbjct: 7 ITIRNISRDSVDFVLTNSSLAVANSLRRVVLAEIPTVAIDLVEINVNTSVMPDEFLAHRL 66
Query: 138 GLIPIIVDPRLFEYMSENDTSNEKN----TIVFKLHVLCERGGPRLTVKTNELKWLPNGS 193
+IP+ D+SN + + + C++ P+ +V
Sbjct: 67 DMIPL-------------DSSNIDEPPPVGLEYTRNCDCDQYCPKCSV------------ 101
Query: 194 ELPLETKPDSNPSSK--PRTYTSFSSSQDLLPEFSNNPIRPMLDITIARLGPGQEIELEA 251
EL L K + + R S+S P ++ R L I +L QEI L
Sbjct: 102 ELFLNAKCTGEGTMEIYARDLVVSSNSSLGHPILADPKSRGPL---ICKLRKEQEISLRC 158
Query: 252 HAVKGIGKTHAKWSPVATAWYRMLP 276
A KGI K HAKWSP + + P
Sbjct: 159 IAKKGIAKEHAKWSPTSAVAFEYDP 183
>gi|226286652|gb|EEH42165.1| DNA-directed RNA polymerase II subunit RPB3 [Paracoccidioides
brasiliensis Pb18]
Length = 352
Score = 75.1 bits (183), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 59/194 (30%), Positives = 88/194 (45%), Gaps = 33/194 (17%)
Query: 88 MEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRLGLIPIIVDPR 147
++F L +D A AN+ RR ++AE+PT+AI+ V I +NTSV+ DE +AHRLGLIP+
Sbjct: 26 VDFRLSSVDLAFANSLRRTMLAEIPTVAIDVVEIESNTSVLPDEFVAHRLGLIPL----- 80
Query: 148 LFEYMSENDTSNEKNTIVFKLHVLCERGGPRLTVKTNELKWLPNGSELPLETKPDSNPSS 207
++ N + + CE G R V L L +
Sbjct: 81 --------NSKNCDADMDYSRDCDCEGGCARCVVM------------LSLNVRCTGEDVM 120
Query: 208 KPRTYTSFSSSQDLLPEFSNNPIRPMLDI-----TIARLGPGQEIELEAHAVKGIGKTHA 262
K D E+ +P+ + D I +L GQE+++ A KGI K H+
Sbjct: 121 KVYA-RDLIIVGDRANEWVGSPV--ITDAEGKGPVICKLSRGQELKMTCIAKKGIAKEHS 177
Query: 263 KWSPVATAWYRMLP 276
KW+P A + P
Sbjct: 178 KWAPTAAVGFEYDP 191
>gi|313232341|emb|CBY09450.1| unnamed protein product [Oikopleura dioica]
Length = 164
Score = 74.7 bits (182), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 61/183 (33%), Positives = 90/183 (49%), Gaps = 36/183 (19%)
Query: 77 RVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHR 136
R+E I+ ++ +F + D ++ANA RR+ +AE+P +AI+ + I NT+V+ DE LAHR
Sbjct: 10 RIEEIK--DENCKFSIENTDLSVANALRRVWLAEVPVLAIDWIRIEENTTVLIDEFLAHR 67
Query: 137 LGLIPI----IVDPRLFEYMSENDTSNEKN--TIVFKLHVLCERGGPRLTVKTNELKWLP 190
L LIP+ +VD +Y+ + N N T+ F L V C+ R TV T +L
Sbjct: 68 LALIPLHCEEVVDK--MQYIRDCSCDNFCNDCTVEFTLDVTCDTDATR-TVTTADL---- 120
Query: 191 NGSELPLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPMLDITIARLGPGQEIELE 250
NPS +P + S D SN I I +L GQ ++L
Sbjct: 121 ----------ISGNPSVQP----ALGKSDDDYNRDSNQ-------ILIVKLRKGQTLKLT 159
Query: 251 AHA 253
AHA
Sbjct: 160 AHA 162
>gi|295662885|ref|XP_002791996.1| DNA-directed RNA polymerase II subunit RPB3 [Paracoccidioides sp.
'lutzii' Pb01]
gi|226279648|gb|EEH35214.1| DNA-directed RNA polymerase II subunit RPB3 [Paracoccidioides sp.
'lutzii' Pb01]
Length = 352
Score = 74.7 bits (182), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 59/194 (30%), Positives = 88/194 (45%), Gaps = 33/194 (17%)
Query: 88 MEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRLGLIPIIVDPR 147
++F L +D A AN+ RR ++AE+PT+AI+ V I +NTSV+ DE +AHRLGLIP+
Sbjct: 26 VDFRLSSVDLAFANSLRRTMLAEIPTVAIDVVEIESNTSVLPDEFVAHRLGLIPL----- 80
Query: 148 LFEYMSENDTSNEKNTIVFKLHVLCERGGPRLTVKTNELKWLPNGSELPLETKPDSNPSS 207
++ N + + CE G R V L L +
Sbjct: 81 --------NSKNCDADMDYSRDCDCEGGCARCIVM------------LSLNVRCTGEDVM 120
Query: 208 KPRTYTSFSSSQDLLPEFSNNPIRPMLDI-----TIARLGPGQEIELEAHAVKGIGKTHA 262
K D E+ +P+ + D I +L GQE+++ A KGI K H+
Sbjct: 121 KVYA-RDLIIVGDRANEWVGSPV--ITDAEGKGPVICKLSRGQELKMTCIAKKGIAKEHS 177
Query: 263 KWSPVATAWYRMLP 276
KW+P A + P
Sbjct: 178 KWAPTAAVGFEYDP 191
>gi|290559364|gb|EFD92697.1| RNA polymerase insert [Candidatus Parvarchaeum acidophilus ARMAN-5]
Length = 247
Score = 74.7 bits (182), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 73/252 (28%), Positives = 110/252 (43%), Gaps = 57/252 (22%)
Query: 76 FRVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAH 135
+VE++ K + + L G A+ANA RR +I + T+AI+ V I NTS + DEVLA
Sbjct: 1 MKVELLE-EKTETKLLLNGCSVAMANAIRRAIINGVYTLAIDDVTIYKNTSSMFDEVLAA 59
Query: 136 RLGLIPIIVDPRLFEYMSENDTSNEKNTIVFKLHVLCERGGPRLTVKTNELKWLPNGSEL 195
RLGLIPI + K + KL + GP+ V ++L
Sbjct: 60 RLGLIPIKTPIEV----------KGKGKFLLKLKEM----GPK-AVHASDL--------- 95
Query: 196 PLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPMLDITIARLGPGQEIELEAHAVK 255
SS +D++P I ML I L G+ +ELEA
Sbjct: 96 -------------------VSSDKDVVP-----AIPEML---IINLKDGESLELEAETTW 128
Query: 256 GIGKTHAKWSPVATAWYRMLPEIVLLEDVEDEDAEKLVKTCPVNVFDIEDIGSGKKRATV 315
G G H K++P A +Y P+I + + + A K+ CPV++ D + K +
Sbjct: 129 GNGAIHTKFTP-AHVYYHFYPKIT-IPNSSVKGAAKIASLCPVDILDGQKDSLSVKSGKL 186
Query: 316 AQPRACTLCREC 327
++ C LC+ C
Sbjct: 187 SE---CILCKAC 195
>gi|269986616|gb|EEZ92898.1| RNA polymerase insert [Candidatus Parvarchaeum acidiphilum ARMAN-4]
Length = 248
Score = 74.7 bits (182), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 69/252 (27%), Positives = 108/252 (42%), Gaps = 56/252 (22%)
Query: 76 FRVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAH 135
+ E++ + + L ++ NA RR +I + T+ IE V I NTS + DE+LA
Sbjct: 1 MKAEIVETKDNTAKILLEDFKVSMVNALRRSIINGVNTLTIEDVKIYKNTSFMYDEILAS 60
Query: 136 RLGLIPIIVDPRLFEYMSENDTSNEKNTIVFKLHVLCERGGPRLTVKTNELKWLPNGSEL 195
RLGLIPI L K FKL + GP+ V ++L +
Sbjct: 61 RLGLIPIKTPIEL----------KGKGKFSFKLKEM----GPK-AVHASDL--------V 97
Query: 196 PLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPMLDITIARLGPGQEIELEAHAVK 255
P S +D++P S D+ I L G+ I+LEA
Sbjct: 98 P--------------------SDKDVVPAIS--------DMLIINLKDGEAIDLEAETAW 129
Query: 256 GIGKTHAKWSPVATAWYRMLPEIVLLEDVEDEDAEKLVKTCPVNVFDIEDIGSGKKRATV 315
G G H+K++P A +Y P+I + + + + A K+ CPV++ D E K+ +
Sbjct: 130 GNGADHSKFTP-AHVFYHFYPKIT-IPNSKVKGAAKIASLCPVDILDGEKDTLSVKKGKL 187
Query: 316 AQPRACTLCREC 327
+ C LC+ C
Sbjct: 188 SD---CILCKAC 196
>gi|400600522|gb|EJP68196.1| RNA polymerase Rpb3/RpoA insert domain-containing protein
[Beauveria bassiana ARSEF 2860]
Length = 350
Score = 74.7 bits (182), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 66/227 (29%), Positives = 98/227 (43%), Gaps = 47/227 (20%)
Query: 58 YASMGVDNSLQLDHFCNNFRVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIE 117
Y M VD + H V V+ +EF+L + + AN+ RR++ AE+PT+AI+
Sbjct: 6 YDPMMVDAEAEQPH------VTVLAADTTKVEFELSRTNLSFANSLRRVIQAEVPTVAID 59
Query: 118 KVLIANNTSVIQDEVLAHRLGLIPI---IVDPRLFEYMSENDTSNEKNTIVFKLHVLCER 174
V I NTSV+ DE +AHRLGLIP+ VD + + + E+ +I LH C
Sbjct: 60 LVEIEINTSVLADEFIAHRLGLIPLDSKDVDELNYSRDCDCEQYCEQCSITLTLHAKC-T 118
Query: 175 GGPRLTVKTNELKWLPNGSE-----LPLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNP 229
+ V +L + +G P+ T PD
Sbjct: 119 SDENMKVYARDL--IVDGRHATSIGTPIITDPDG-------------------------- 150
Query: 230 IRPMLDITIARLGPGQEIELEAHAVKGIGKTHAKWSPVATAWYRMLP 276
+ +A+L QE+ L+ A KGI K HAKW P + + P
Sbjct: 151 ----VGCLLAKLRRDQELRLKCVAKKGIAKEHAKWMPTSAVGFEYDP 193
>gi|443917515|gb|ELU38215.1| DNA-directed RNA polymerase II polypeptide [Rhizoctonia solani AG-1
IA]
Length = 381
Score = 74.3 bits (181), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 56/201 (27%), Positives = 94/201 (46%), Gaps = 25/201 (12%)
Query: 83 LTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRLGLIPI 142
+ K + F L G++ A AN+ RR+ +A+LPT+AI+ V I +NT+V+ DE LAHRLG++P+
Sbjct: 16 IKKQSVNFVLEGVELAFANSLRRVCMADLPTIAIDLVEIESNTTVLPDEFLAHRLGMVPL 75
Query: 143 IVDPRLFEYMSENDTSNEKNTIVFK-------LHVLCERGGPRLTVKTNELKWLPNGSEL 195
+ + +E T + + L++ + + +N L +P+G
Sbjct: 76 V-----------STNCDEDCTCISRCKYCSVELYLNVSSTNQPVDITSNNLDVVPSGGGE 124
Query: 196 PLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPMLDITIARLGPGQEIELEAHAVK 255
+ +F + P ++P P + + R+ GQE+ L A K
Sbjct: 125 FGGEDEGEEGDELQKRPPNFGT-----PIGKDDPNVP--PVLLCRIRKGQELRLRCIAKK 177
Query: 256 GIGKTHAKWSPVATAWYRMLP 276
G K HAKWSP + P
Sbjct: 178 GTAKEHAKWSPCTGVGFEYDP 198
>gi|379005500|ref|YP_005261172.1| DNA-directed RNA polymerase, alpha subunit/40 kD subunit
[Pyrobaculum oguniense TE7]
gi|375160953|gb|AFA40565.1| DNA-directed RNA polymerase, alpha subunit/40 kD subunit
[Pyrobaculum oguniense TE7]
Length = 273
Score = 74.3 bits (181), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 81/268 (30%), Positives = 120/268 (44%), Gaps = 65/268 (24%)
Query: 77 RVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHR 136
RV ++ ++ ++ + G+ ++ N+ RR++I+ELP MAI+ V++ NNTSV+ DE LA R
Sbjct: 17 RVSIVEKSQLFLKAIVEGVPPSLVNSLRRVIISELPVMAIDTVVVVNNTSVMYDEFLAQR 76
Query: 137 LGLIPIIVDPRLFEYMSENDTSNEKNTIVFKLHVLCERGGPRLTVKTNELKWLPNGSELP 196
LGLIP+ E T T VL +TV + +L SE P
Sbjct: 77 LGLIPLTTPLHSLPTYEECATGVADPTECGTRLVLQVTADGDVTVYSGDL-----ASERP 131
Query: 197 LETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPMLDITIARLGPGQEIELEAHAVKG 256
D++P + DI I +L GQ I +EA+A G
Sbjct: 132 -----------------------DVVPVYK--------DIPIVKLVKGQSIVIEAYAKLG 160
Query: 257 IGKTHAKWSPVATAWYRMLPEIVLLEDVEDEDAEKLVK-TCPVNVFDIEDIGSGKKRATV 315
I K HAKW ATA Y P+++ ++DE ++ K CP D+ED
Sbjct: 161 IAKDHAKWQ-AATASYYYYPKVI----IKDEKCREICKEICP----DLED---------- 201
Query: 316 AQPRACTL-----CRECLRCG--EEWEK 336
P CT C++ + G EWEK
Sbjct: 202 --PIKCTFNKAWTCKDLCKGGLDVEWEK 227
>gi|297618745|ref|YP_003706850.1| RNA polymerase insert [Methanococcus voltae A3]
gi|297377722|gb|ADI35877.1| RNA polymerase insert [Methanococcus voltae A3]
Length = 188
Score = 74.3 bits (181), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 58/200 (29%), Positives = 88/200 (44%), Gaps = 56/200 (28%)
Query: 98 AIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRLGLIPIIVDPRLFEYMSENDT 157
+ ++A RRI+I+ELPT AIE V NTS + DEVLAHRLG++PI
Sbjct: 21 SFSSALRRIMISELPTYAIENVFFYENTSSMYDEVLAHRLGMVPI--------------- 65
Query: 158 SNEKNTIVFKLHVLCERGGPRLTVKTNELKWLPNGSELPLETKPDSNPSSKPRTYTSFSS 217
+G P V ++EL E P Y+S +
Sbjct: 66 ----------------KGKP---VSSDELITFVVSKEGPC------------TVYSSDLN 94
Query: 218 SQDLLPEFSNNPIRPMLDITIARLGPGQEIELEAHAVKGIGKTHAKWSPVATAWYRMLPE 277
S+ F N P + +L GQ++E E A+ G GK H+KW P + +
Sbjct: 95 SEVGESAFDNVP--------LVKLAEGQKLEAECEALVGTGKIHSKWQPCNVVYKELGDN 146
Query: 278 IV--LLEDVEDEDAEKLVKT 295
+V +E ++ +AE L+++
Sbjct: 147 LVEFKIESHKNMEAEDLIRS 166
>gi|330947784|ref|XP_003306966.1| hypothetical protein PTT_20284 [Pyrenophora teres f. teres 0-1]
gi|311315237|gb|EFQ84939.1| hypothetical protein PTT_20284 [Pyrenophora teres f. teres 0-1]
Length = 334
Score = 74.3 bits (181), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 60/223 (26%), Positives = 100/223 (44%), Gaps = 32/223 (14%)
Query: 74 NNFRVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVL 133
++ V + + F + + AN+ RR++++E+PT+AI+ V + +NTSV+ DE +
Sbjct: 8 DSINVRFLEASSQRASFIVQNFNLETANSLRRVMLSEIPTLAIDVVEVLDNTSVLADEFV 67
Query: 134 AHRLGLIPII---VDPRLFEYMSENDTSNEKNTIVFKLHVLCERGGPRLTVKTNELKWLP 190
HRLGLIP+ VD ++ + + + +V L+ C G + V +L
Sbjct: 68 CHRLGLIPLSSKGVDDLVYSRDCDCEGYCDNCAVVLSLNAKC-TGSEIMKVYARDLV--- 123
Query: 191 NGSELPLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPMLDITIARLGPGQEIELE 250
+E++ ++ KP S + I +L GQ I +
Sbjct: 124 ------IESRTPNDEVGKPVITDSEGTGS-----------------CIVKLRRGQAINMR 160
Query: 251 AHAVKGIGKTHAKWSPVATAWYRMLPEIVL--LEDVEDEDAEK 291
A KGI K HAKW+P A + P L L+ +ED EK
Sbjct: 161 CIAKKGIAKEHAKWAPSAAIGFEYDPANKLHHLDYWHEEDPEK 203
>gi|327311714|ref|YP_004338611.1| RNA polymerase, insert [Thermoproteus uzoniensis 768-20]
gi|326948193|gb|AEA13299.1| RNA polymerase, insert [Thermoproteus uzoniensis 768-20]
Length = 279
Score = 74.3 bits (181), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 72/223 (32%), Positives = 104/223 (46%), Gaps = 52/223 (23%)
Query: 83 LTKDDMEFDLI--GIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRLGLI 140
L +D++ L G+ ++ N+ RRI+I+E+P AI++VLI NNTS + DE+LAHRLGLI
Sbjct: 7 LERDNLHLKLYIEGVKPSLINSIRRIIISEVPVFAIDQVLIVNNTSSMYDEMLAHRLGLI 66
Query: 141 PIIVDPRLFEYMSENDTSN---EKNTIVFKLHVLCERGGPRLTVKTNELKWLPNGSELPL 197
P+ LF + E +T + T+ F L V + TV + +L +
Sbjct: 67 PLTTPLDLFPKIEECETGMVDPAECTVRFTLQVTADDAK---TVYSGDL----------V 113
Query: 198 ETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPMLDITIARLGPGQEIELEAHAVKGI 257
PD P+ P DI I +L GQ I LEA+A G
Sbjct: 114 SDHPDV------------------------KPVYP--DIPIVKLVKGQSISLEAYARLGR 147
Query: 258 GKTHAKWSPVATAWYRMLPEIVLLEDVEDEDAEKLVKT---CP 297
K HAKW A Y P+++ V+ ED + L + CP
Sbjct: 148 AKEHAKWQ-AGLATYYYFPKLI----VKGEDPQCLAQCKSICP 185
>gi|332157864|ref|YP_004423143.1| DNA-directed RNA polymerase subunit D [Pyrococcus sp. NA2]
gi|331033327|gb|AEC51139.1| DNA-directed RNA polymerase subunit D [Pyrococcus sp. NA2]
Length = 259
Score = 73.9 bits (180), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 62/219 (28%), Positives = 102/219 (46%), Gaps = 46/219 (21%)
Query: 77 RVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHR 136
++++++ T+D + F L G+ A AN+ RR ++ E+PT A+++V N S + DE++AHR
Sbjct: 3 KIKILKKTEDSITFLLEGVSVAFANSLRRTILGEVPTFAVDEVEFYENDSALFDEIIAHR 62
Query: 137 LGLIPIIVDPRLFEYMSENDTSNEKNTIVFKLHVLCERGGPRLTVKTNELKWLPNGSELP 196
L +IP+ FE + E + L + E GP + +
Sbjct: 63 LAMIPLKTPVDRFEL-----DALELDDYTVTLSLKAE--GPGIVYSGD------------ 103
Query: 197 LETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPMLDITIARLGPGQEIELEAHAVKG 256
LE+ +P KP NP +I I +L GQ++ A+A G
Sbjct: 104 LES---DDPDVKPV-----------------NP-----NIPIVKLAKGQKLVFNAYARLG 138
Query: 257 IGKTHAKWSPVATAWYRMLPEIVLLEDVED-EDAEKLVK 294
GK HAKW P T +Y+ +I + + +E E +KL K
Sbjct: 139 RGKDHAKWQPGFT-YYKYYTKIHISKKIEGWEKLKKLAK 176
>gi|18312091|ref|NP_558758.1| DNA-directed RNA polymerase subunit D (rpoD) [Pyrobaculum
aerophilum str. IM2]
gi|20978701|sp|Q8ZYQ3.1|RPOD_PYRAE RecName: Full=DNA-directed RNA polymerase subunit D
gi|18159521|gb|AAL62940.1| DNA-directed RNA polymerase subunit D (rpoD) [Pyrobaculum
aerophilum str. IM2]
Length = 260
Score = 73.9 bits (180), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 63/191 (32%), Positives = 93/191 (48%), Gaps = 45/191 (23%)
Query: 94 GIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRLGLIPIIVD----PRLF 149
G+ ++ N+ RR++I+ELP MAI+ V++ NNTSV+ DE+LAHRLGLIP+ P
Sbjct: 20 GVPPSLVNSLRRVIISELPVMAIDNVVVVNNTSVMYDEMLAHRLGLIPLTTPLQSLPPYE 79
Query: 150 EYMSENDTSNEKNTIVFKLHVLCERGGPRLTVKTNELKWLPNGSELPLETKPDSNPSSKP 209
+ +S +E +T RLT++ +E S +P
Sbjct: 80 DCVSGLADPSECST--------------RLTLQVT--------AEGDTTIYSGDLASDRP 117
Query: 210 RTYTSFSSSQDLLPEFSNNPIRPMLDITIARLGPGQEIELEAHAVKGIGKTHAKWSPVAT 269
D++P + DI I +L GQ I LEA+A G+ K HAKW AT
Sbjct: 118 ----------DVVPVYK--------DIPIVKLVKGQSIVLEAYAKLGVAKDHAKWQ-AAT 158
Query: 270 AWYRMLPEIVL 280
A Y P++V+
Sbjct: 159 ASYYYYPKVVV 169
>gi|329766306|ref|ZP_08257853.1| RNA polymerase insert [Candidatus Nitrosoarchaeum limnia SFB1]
gi|329137208|gb|EGG41497.1| RNA polymerase insert [Candidatus Nitrosoarchaeum limnia SFB1]
Length = 212
Score = 73.9 bits (180), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 59/191 (30%), Positives = 86/191 (45%), Gaps = 40/191 (20%)
Query: 78 VEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRL 137
+EVI + L G+ ANA RRI + +P AI+ V I N+SV+ DE LAHRL
Sbjct: 4 LEVINKDNQKISIKLKGVPLQYANALRRICLNGIPVFAIDTVDIIENSSVLPDEGLAHRL 63
Query: 138 GLIPIIVDPRLFEYMSENDTSNEKNTIVFKLHVLCERGGPRL--TVKTNELKWLPNGSEL 195
GLIP+ D F S+ D +E K+ ++ + G + T+ +NEL
Sbjct: 64 GLIPLQTDLSRFNEPSKCDCKSETGCSNCKVMLVLDSGDSDVTRTILSNEL--------- 114
Query: 196 PLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPMLD-ITIARLGPGQEIELEAHAV 254
+S+D ++P D I I +L GQ I++E +A
Sbjct: 115 ---------------------TSED-------ESVKPTSDKIPIVQLAAGQRIKVECYAR 146
Query: 255 KGIGKTHAKWS 265
G G HAKW+
Sbjct: 147 LGRGTEHAKWN 157
>gi|393796020|ref|ZP_10379384.1| RNA polymerase insert [Candidatus Nitrosoarchaeum limnia BG20]
Length = 212
Score = 73.9 bits (180), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 59/191 (30%), Positives = 86/191 (45%), Gaps = 40/191 (20%)
Query: 78 VEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRL 137
+EVI + L G+ ANA RRI + +P AI+ V I N+SV+ DE LAHRL
Sbjct: 4 LEVINKDNQKISIKLKGVPLQYANALRRICLNGIPVFAIDTVDIIENSSVLPDEGLAHRL 63
Query: 138 GLIPIIVDPRLFEYMSENDTSNEKNTIVFKLHVLCERGGPRL--TVKTNELKWLPNGSEL 195
GLIP+ D F S+ D +E K+ ++ + G + T+ +NEL
Sbjct: 64 GLIPLQTDLSRFNEPSKCDCKSETGCSNCKVMLVLDSGDSDVTRTILSNEL--------- 114
Query: 196 PLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPMLD-ITIARLGPGQEIELEAHAV 254
+S+D ++P D I I +L GQ I++E +A
Sbjct: 115 ---------------------TSED-------ESVKPTSDKIPIVQLAAGQRIKVECYAR 146
Query: 255 KGIGKTHAKWS 265
G G HAKW+
Sbjct: 147 LGRGTEHAKWN 157
>gi|422293779|gb|EKU21079.1| DNA-directed RNA polymerase II subunit RPB3, partial
[Nannochloropsis gaditana CCMP526]
Length = 121
Score = 73.6 bits (179), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 37/72 (51%), Positives = 54/72 (75%), Gaps = 1/72 (1%)
Query: 77 RVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHR 136
++E++ L D ++F L DA++ANA RR++IAE+PT+AI+ V N+SV+ DE LAHR
Sbjct: 8 KLEILELKDDFIKFILSDTDASVANALRRVMIAEVPTLAIDLVSFEVNSSVLNDEYLAHR 67
Query: 137 LGLIPI-IVDPR 147
LGLIP+ V+PR
Sbjct: 68 LGLIPLRSVNPR 79
>gi|189199142|ref|XP_001935908.1| DNA-directed RNA polymerase subunit D [Pyrenophora tritici-repentis
Pt-1C-BFP]
gi|187983007|gb|EDU48495.1| DNA-directed RNA polymerase subunit D [Pyrenophora tritici-repentis
Pt-1C-BFP]
Length = 334
Score = 73.6 bits (179), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 57/197 (28%), Positives = 92/197 (46%), Gaps = 32/197 (16%)
Query: 100 ANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRLGLIPII---VDPRLFEYMSEND 156
AN+ RR++++E+PT+AI+ V + +NTSV+ DE + HRLGL+P+ VD ++ + +
Sbjct: 34 ANSLRRVMLSEIPTLAIDVVEVLDNTSVLADEFVCHRLGLVPLSSKGVDDLIYSRDCDCE 93
Query: 157 TSNEKNTIVFKLHVLCERGGPRLTVKTNELKWLPNGSELPLETKPDSNPSSKPRTYTSFS 216
+ +V L+ C G + V +L +E++ ++ KP S
Sbjct: 94 GYCDNCAVVLSLNAKC-TGSEIMKVYARDLV---------IESRTPNDEVGKPVITDSEG 143
Query: 217 SSQDLLPEFSNNPIRPMLDITIARLGPGQEIELEAHAVKGIGKTHAKWSPVATAWYRMLP 276
+ I +L GQ I + A KGI K HAKW+P A + P
Sbjct: 144 TGS-----------------CIVKLRRGQAINMRCIAKKGIAKEHAKWAPSAAIGFEYDP 186
Query: 277 EIVL--LEDVEDEDAEK 291
L L+ +ED EK
Sbjct: 187 ANKLHHLDYWHEEDPEK 203
>gi|16082064|ref|NP_394490.1| DNA-directed RNA polymerase subunit D [Thermoplasma acidophilum DSM
1728]
gi|13124516|sp|Q9HJD9.1|RPOD_THEAC RecName: Full=DNA-directed RNA polymerase subunit D
gi|10640345|emb|CAC12159.1| DNA-dependent RNA polymerase, subunit D related protein
[Thermoplasma acidophilum]
Length = 271
Score = 73.2 bits (178), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 64/235 (27%), Positives = 101/235 (42%), Gaps = 51/235 (21%)
Query: 78 VEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVL------------IANNT 125
V++ +L+ + F++ GI + ANA RR LI ++P +AIE V + +++
Sbjct: 3 VKIFKLSDKYIRFEIDGITPSQANALRRTLINDIPKLAIENVTFHHGEIRDSEGNVYDSS 62
Query: 126 SVIQDEVLAHRLGLIPIIVDPRLFEYMSENDTSNEKNTIVFKLHVLCERGGPRLTVKTNE 185
+ DE++AHRLGLIP+ D T+ F+ C G L T
Sbjct: 63 LPLFDEMVAHRLGLIPLKTDL----------------TMNFRDQCSCGGKGCSLCTVTYS 106
Query: 186 LKWLPNGSELPLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPMLDITIARLGPGQ 245
+ L + + + S+P DL+P P I +LGP Q
Sbjct: 107 INKLGPSTVFSSDLQAVSHP--------------DLIPVDGEIP--------IVKLGPKQ 144
Query: 246 EIELEAHAVKGIGKTHAKWSPVATAWYRMLPEIVLLEDVEDEDAEKLVKTCPVNV 300
I + A A+ G K HAKW + Y+ E + + + ED +KL CP +V
Sbjct: 145 AILITAEAILGTAKEHAKWQVTSGVSYKYHREFHVSKK-DFEDWQKLKGACPKSV 198
>gi|336121979|ref|YP_004576754.1| DNA-directed RNA polymerase [Methanothermococcus okinawensis IH1]
gi|334856500|gb|AEH06976.1| DNA-directed RNA polymerase [Methanothermococcus okinawensis IH1]
Length = 197
Score = 73.2 bits (178), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 71/223 (31%), Positives = 108/223 (48%), Gaps = 60/223 (26%)
Query: 74 NNFRVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVL 133
NN + E R+ + ++F+L + ++A RRI+I+E PT AIE V NTS + DE++
Sbjct: 3 NNIQKEKTRIG-ERLKFNLKA-PLSFSSALRRIMISETPTYAIENVYFYENTSSMYDELI 60
Query: 134 AHRLGLIPIIVDPRLFEYMSENDTSNEKNTIVFKLHVLCERGGPRLTVKTNELKWLPNGS 193
AHRLGLIPI P SN++ I+F L + GP V + +L+
Sbjct: 61 AHRLGLIPIKGKP----------VSNDE-VIIFALI----KEGP-CVVYSGDLE------ 98
Query: 194 ELPLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPMLDITIARLGPGQEIELEAHA 253
S + +++ F + PI +L GQ++ELE A
Sbjct: 99 ----------------------SETGEVV--FKHIPI--------VKLKEGQKLELECEA 126
Query: 254 VKGIGKTHAKWSPVATAWYRML--PEI-VLLEDVEDEDAEKLV 293
+ G GKTHAKW P A Y++L E+ L+E + D+E L+
Sbjct: 127 LVGTGKTHAKWQP-CNAVYKLLNNDEVEFLVESYGNMDSEDLL 168
>gi|170291194|ref|YP_001738010.1| DNA-directed RNA polymerase subunit D [Candidatus Korarchaeum
cryptofilum OPF8]
gi|170175274|gb|ACB08327.1| DNA-directed RNA polymerase subunit D [Candidatus Korarchaeum
cryptofilum OPF8]
Length = 251
Score = 73.2 bits (178), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 61/210 (29%), Positives = 91/210 (43%), Gaps = 45/210 (21%)
Query: 76 FRVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAH 135
+V VI L+ L G+ + AN+ RR +IAE+PT AI++V+ NT+ DE +AH
Sbjct: 1 MKVRVIELSDQRTLLVLEGVSPSFANSIRRAIIAEVPTFAIDEVIFFENTTPFFDEYIAH 60
Query: 136 RLGLIPIIVDPRLFEYMSENDTSNEKNTIVFKLHVLCERGGPRLTVKTNELKWLPNGSEL 195
RL +IP+ + + T+V +L + P V + ELK
Sbjct: 61 RLAMIPLRTSLDVLRV-------DPNRTVVLELSKKAK--DPIEVVYSGELK-------- 103
Query: 196 PLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPMLDITIARLGPGQEIELEAHAVK 255
SS P Y + D +P I ++ GQ++ +A A
Sbjct: 104 ----------SSDPLIYP----ANDKIP--------------IIKMRKGQKLRFQAIARI 135
Query: 256 GIGKTHAKWSPVATAWYRMLPEIVLLEDVE 285
G GK H+KWSP A Y +P L + VE
Sbjct: 136 GRGKDHSKWSPAAAVGYSYMPIYELKDPVE 165
>gi|322369534|ref|ZP_08044099.1| DNA-directed RNA polymerase subunit D [Haladaptatus paucihalophilus
DX253]
gi|320551266|gb|EFW92915.1| DNA-directed RNA polymerase subunit D [Haladaptatus paucihalophilus
DX253]
Length = 248
Score = 72.8 bits (177), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 63/212 (29%), Positives = 91/212 (42%), Gaps = 52/212 (24%)
Query: 73 CNNFRVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEV 132
+F VE I + F + + A AN RR +IA++PT++I+ + + N+SV+ DE
Sbjct: 2 TEDFDVEFIDRGERKARFLVRNVTPAFANGIRRAMIADVPTLSIDTLRVIENSSVMFDEQ 61
Query: 133 LAHRLGLIPIIVDPRLFEYMSENDTSNEKNTIVFKLHVLCERGGPRLTVKTNELKWLPNG 192
+ RLGL+P+ P FE E +T+ L V
Sbjct: 62 IGLRLGLVPLTTPPGEFE---------EGDTVTLSLDV---------------------- 90
Query: 193 SELPLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPMLD-ITIARLGPGQEIELEA 251
S P T+FS DL+ S+ ++P D I I L GQ +ELEA
Sbjct: 91 ----------SGPG------TAFSG--DLIS--SDEMVQPADDNIPIIDLKEGQRLELEA 130
Query: 252 HAVKGIGKTHAKWSPVATAWYRMLPEIVLLED 283
AV G GK HAK YR L + ++ D
Sbjct: 131 DAVLGSGKDHAKHQGGVAVGYRHLQRVEVVGD 162
>gi|169608898|ref|XP_001797868.1| hypothetical protein SNOG_07533 [Phaeosphaeria nodorum SN15]
gi|111063879|gb|EAT84999.1| hypothetical protein SNOG_07533 [Phaeosphaeria nodorum SN15]
Length = 335
Score = 72.8 bits (177), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 53/174 (30%), Positives = 83/174 (47%), Gaps = 30/174 (17%)
Query: 100 ANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRLGLIPII---VDPRLFEYMSEND 156
AN+ RR+++AE+PT+AI+ V + +NTSV+ DE + HRLGLIP+ VD L+ + +
Sbjct: 34 ANSLRRVMLAEIPTLAIDVVEVLDNTSVLADEFVCHRLGLIPLSSRGVDDLLYARDCDCE 93
Query: 157 TSNEKNTIVFKLHVLCERGGPRLTVKTNELKWLPNGSELPLETKPDSNPSSKPRTYTSFS 216
+ +V L+ C G + V +L +E+ ++ +P S
Sbjct: 94 GYCDNCAVVLSLNAKC-TGSEIMKVFARDLV---------IESNRPNDEVGRPVITDSEG 143
Query: 217 SSQDLLPEFSNNPIRPMLDITIARLGPGQEIELEAHAVKGIGKTHAKWSPVATA 270
+ I +L GQ I + A KGI K HAKW+P A+A
Sbjct: 144 TGS-----------------CIVKLRRGQAINMRCIAKKGIAKEHAKWAPSASA 180
>gi|13541396|ref|NP_111084.1| DNA-directed RNA polymerase subunit D [Thermoplasma volcanium GSS1]
gi|20978715|sp|Q97B93.1|RPOD_THEVO RecName: Full=DNA-directed RNA polymerase subunit D
gi|14324779|dbj|BAB59706.1| DNA-directed RNA polymerase D [Thermoplasma volcanium GSS1]
Length = 271
Score = 72.8 bits (177), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 65/236 (27%), Positives = 103/236 (43%), Gaps = 51/236 (21%)
Query: 78 VEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVL------------IANNT 125
V++ +L+ M F++ GI + ANA RR LI ++P +AIE V + +++
Sbjct: 3 VKIFKLSDKYMSFEIDGITPSQANALRRTLINDIPKLAIENVTFHHGEIRDAEGNVYDSS 62
Query: 126 SVIQDEVLAHRLGLIPIIVDPRLFEYMSENDTSNEKNTIVFKLHVLCERGGPRLTVKTNE 185
+ DE++AHRLGLIP+ D L F+ C G L T
Sbjct: 63 LPLFDEMVAHRLGLIPLKTDLSL----------------NFRDQCSCGGKGCSLCTVTYS 106
Query: 186 LKWLPNGSELPLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPMLDITIARLGPGQ 245
+ + S + + + S+P DL+ P+ P DI I +LG Q
Sbjct: 107 INKIGPASVMSGDIQAISHP--------------DLV------PVDP--DIPIVKLGAKQ 144
Query: 246 EIELEAHAVKGIGKTHAKWSPVATAWYRMLPEIVLLEDVEDEDAEKLVKTCPVNVF 301
I + A A+ G K HAKW + Y+ E + + + ED K+ + CP +V
Sbjct: 145 AILITAEAILGTAKEHAKWQVTSGVAYKYHREFEVNKKLF-EDWAKIKERCPKSVL 199
>gi|289580107|ref|YP_003478573.1| RNA polymerase insert [Natrialba magadii ATCC 43099]
gi|448281346|ref|ZP_21472652.1| DNA-directed RNA polymerase subunit D [Natrialba magadii ATCC
43099]
gi|289529660|gb|ADD04011.1| RNA polymerase insert [Natrialba magadii ATCC 43099]
gi|445578768|gb|ELY33168.1| DNA-directed RNA polymerase subunit D [Natrialba magadii ATCC
43099]
Length = 249
Score = 72.4 bits (176), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 65/210 (30%), Positives = 92/210 (43%), Gaps = 51/210 (24%)
Query: 76 FRVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAH 135
+ VE + + D F + GI A AN RR ++A++PTMAI+ V N+SV+ DE LA
Sbjct: 5 YDVEFVEREERDARFLVQGITPAFANGIRRAMLADVPTMAIDTVRFVENSSVMFDEQLAL 64
Query: 136 RLGLIPIIVDPRLFEYMSENDTSNEKNTIVFKLHVLCERGGPRLTVKTNELKWLPNGSEL 195
RLGL+P+ P + E++ E +T+ + V GP T + +L
Sbjct: 65 RLGLVPLTT-PPVGEFV-------EDDTVTLSIDV----EGP-ATAYSGDL--------- 102
Query: 196 PLETKPDSNPSSKPRTYTSFSSSQDLL-PEFSNNPIRPMLDITIARLGPGQEIELEAHAV 254
SS DL+ P N PI + D GQ +E EA AV
Sbjct: 103 --------------------VSSDDLVQPADENVPIIDLKD--------GQRLEAEADAV 134
Query: 255 KGIGKTHAKWSPVATAWYRMLPEIVLLEDV 284
GK HAK YR L + +ED+
Sbjct: 135 LDRGKDHAKHQGGVAVGYRHLQRVAAVEDL 164
>gi|194761112|ref|XP_001962776.1| GF19666 [Drosophila ananassae]
gi|190616473|gb|EDV31997.1| GF19666 [Drosophila ananassae]
Length = 125
Score = 72.4 bits (176), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 33/74 (44%), Positives = 52/74 (70%)
Query: 72 FCNNFRVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDE 131
+ N V++ LT D+++F L + ++AN+ RR+ IAE PT+AI+ V + N++V+ DE
Sbjct: 3 YANQPSVQITELTDDNVKFVLEDTELSVANSLRRVFIAETPTLAIDWVQLEANSTVLSDE 62
Query: 132 VLAHRLGLIPIIVD 145
LAHR+GLIP+I D
Sbjct: 63 FLAHRIGLIPLISD 76
>gi|18978019|ref|NP_579376.1| DNA-directed RNA polymerase subunit D [Pyrococcus furiosus DSM
3638]
gi|397652704|ref|YP_006493285.1| DNA-directed RNA polymerase subunit D [Pyrococcus furiosus COM1]
gi|23822102|sp|Q8U0E4.1|RPOD_PYRFU RecName: Full=DNA-directed RNA polymerase subunit D
gi|18893802|gb|AAL81771.1| DNA-directed RNA polymerase subunit d [Pyrococcus furiosus DSM
3638]
gi|393190295|gb|AFN04993.1| DNA-directed RNA polymerase subunit D [Pyrococcus furiosus COM1]
Length = 261
Score = 72.0 bits (175), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 56/196 (28%), Positives = 88/196 (44%), Gaps = 45/196 (22%)
Query: 78 VEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRL 137
V+++ +D ++F L G+ + ANA RR ++ E+PT A+++V N S + DE++AHRL
Sbjct: 6 VQILEKKEDSIKFVLKGVHVSFANALRRTILGEVPTFAVDEVEFYENDSALFDEIIAHRL 65
Query: 138 GLIPIIVDPRLFEYMSENDTSNEKNTIVFKLHVLCERGGPRLTVKTNELKWLPNGSELPL 197
+IP+ FE + + T+ L E GP + V + +LK
Sbjct: 66 AMIPLTTPVDRFEL---DALELDDYTVTLSL----EAEGPGI-VYSGDLK---------- 107
Query: 198 ETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPMLDITIARLGPGQEIELEAHAVKGI 257
+P KP NP +I I +L GQ + A+A G
Sbjct: 108 ----SDDPDVKPV-----------------NP-----NIPIVKLAEGQRLVFNAYAKLGR 141
Query: 258 GKTHAKWSPVATAWYR 273
GK HAKW P +Y+
Sbjct: 142 GKDHAKWQP-GFVYYK 156
>gi|448352729|ref|ZP_21541510.1| DNA-directed RNA polymerase subunit D [Natrialba hulunbeirensis JCM
10989]
gi|448358769|ref|ZP_21547445.1| DNA-directed RNA polymerase subunit D [Natrialba chahannaoensis JCM
10990]
gi|445642008|gb|ELY95079.1| DNA-directed RNA polymerase subunit D [Natrialba hulunbeirensis JCM
10989]
gi|445644783|gb|ELY97792.1| DNA-directed RNA polymerase subunit D [Natrialba chahannaoensis JCM
10990]
Length = 249
Score = 72.0 bits (175), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 65/210 (30%), Positives = 91/210 (43%), Gaps = 51/210 (24%)
Query: 76 FRVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAH 135
+ VE + D F + GI A AN RR ++A++PTMAI+ V N+SV+ DE LA
Sbjct: 5 YDVEFVEREDRDARFLVQGITPAFANGIRRAMLADVPTMAIDTVRFVENSSVMFDEQLAL 64
Query: 136 RLGLIPIIVDPRLFEYMSENDTSNEKNTIVFKLHVLCERGGPRLTVKTNELKWLPNGSEL 195
RLGL+P+ P + E++ E +T+ + V GP T + +L
Sbjct: 65 RLGLVPLTT-PPVGEFV-------EDDTVTLSIDV----EGP-ATAYSGDL--------- 102
Query: 196 PLETKPDSNPSSKPRTYTSFSSSQDLL-PEFSNNPIRPMLDITIARLGPGQEIELEAHAV 254
SS DL+ P N PI + D GQ +E EA AV
Sbjct: 103 --------------------VSSDDLVQPADENVPIIDLKD--------GQRLEAEADAV 134
Query: 255 KGIGKTHAKWSPVATAWYRMLPEIVLLEDV 284
GK HAK YR L + +ED+
Sbjct: 135 LDRGKDHAKHQGGVAVGYRHLQRVAAVEDL 164
>gi|221040824|dbj|BAH12113.1| unnamed protein product [Homo sapiens]
Length = 155
Score = 72.0 bits (175), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 41/111 (36%), Positives = 64/111 (57%), Gaps = 4/111 (3%)
Query: 72 FCNNFRVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDE 131
+ N V + LT ++++F + D A+AN+ RR+ IAE+P +AI+ V I N+SV+ DE
Sbjct: 3 YANQPTVRITELTDENVKFIIENTDLAVANSIRRVFIAEVPIIAIDWVQIDANSSVLHDE 62
Query: 132 VLAHRLGLIPIIVDPRLFEYMSENDTSNEKN----TIVFKLHVLCERGGPR 178
+AHRLGLIP+I D + + D + E+ ++ F L V C R
Sbjct: 63 FIAHRLGLIPLISDDIVDKLQYSRDCTFEEFCPECSVEFTLDVRCNEDQTR 113
>gi|432329429|ref|YP_007247573.1| DNA-directed RNA polymerase, alpha subunit/40 kD subunit
[Aciduliprofundum sp. MAR08-339]
gi|432136138|gb|AGB05407.1| DNA-directed RNA polymerase, alpha subunit/40 kD subunit
[Aciduliprofundum sp. MAR08-339]
Length = 273
Score = 71.6 bits (174), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 64/228 (28%), Positives = 103/228 (45%), Gaps = 56/228 (24%)
Query: 88 MEFDLIGIDAAIANAFRRILIAELPTMAIEKVL------------IANNTSVIQDEVLAH 135
+ F++ GI A+ANA RR LI ++P +AI KV+ + ++++ + DE++AH
Sbjct: 13 IRFEIRGITPAMANALRRTLINDIPKLAIHKVIFHHGQIRDMEGKVYDSSTPLFDEIIAH 72
Query: 136 RLGLIPIIVDPRLFEYMSENDTSNEKNTIVFKLHVLCERGGPRLTVKTNELKWLPNGSEL 195
RLGLIP+ D + ++ E D ++ + + + GP TV + +L +P G +
Sbjct: 73 RLGLIPLPTDLNM-KFRDECDHPPDEGCPLCTVTYTLNKHGPA-TVYSGDL--IPVGDD- 127
Query: 196 PLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPMLDITIARLGPGQEIELEAHAVK 255
P+ P+ I I +L Q I LEA A+
Sbjct: 128 ------------------------------KFRPVDPL--IPIVKLKEHQAILLEAEAIM 155
Query: 256 GIGKTHAKWSPVATAWYRMLPEIVLLEDVEDEDAE---KLVKTCPVNV 300
G K HAKW + Y+ EI V +D+E K+ +CP NV
Sbjct: 156 GTAKEHAKWQVTSGVTYKYHREI----RVSKKDSELWQKVKDSCPKNV 199
>gi|396463947|ref|XP_003836584.1| hypothetical protein LEMA_P041200.1 [Leptosphaeria maculans JN3]
gi|312213137|emb|CBX93219.1| hypothetical protein LEMA_P041200.1 [Leptosphaeria maculans JN3]
Length = 336
Score = 71.2 bits (173), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 56/197 (28%), Positives = 92/197 (46%), Gaps = 32/197 (16%)
Query: 100 ANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRLGLIPII---VDPRLFEYMSEND 156
AN+ RR++++E+PT+AI+ V + +NTSV+ DE + HRLGLIP+ VD L+ + +
Sbjct: 34 ANSLRRVMLSEIPTLAIDVVEVLDNTSVLADEFVCHRLGLIPLCSKGVDDLLYSRDCDCE 93
Query: 157 TSNEKNTIVFKLHVLCERGGPRLTVKTNELKWLPNGSELPLETKPDSNPSSKPRTYTSFS 216
++V L+ C NE+ + +L +E+ ++ +P +
Sbjct: 94 GYCSNCSVVLTLNAKC---------TGNEIMKV-YARDLVVESMTPNDEVGRPVITDADG 143
Query: 217 SSQDLLPEFSNNPIRPMLDITIARLGPGQEIELEAHAVKGIGKTHAKWSPVATAWYRMLP 276
+ I +L GQ I + A KGI K HAKW+P A + P
Sbjct: 144 TGS-----------------CIVKLRRGQAIHMRCIAKKGIAKEHAKWAPSAAIGFEYDP 186
Query: 277 EIVL--LEDVEDEDAEK 291
L L+ +ED +K
Sbjct: 187 ANKLHHLDYWHEEDPDK 203
>gi|194860382|ref|XP_001969570.1| GG23887 [Drosophila erecta]
gi|190661437|gb|EDV58629.1| GG23887 [Drosophila erecta]
Length = 117
Score = 71.2 bits (173), Expect = 8e-10, Method: Composition-based stats.
Identities = 36/92 (39%), Positives = 56/92 (60%)
Query: 72 FCNNFRVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDE 131
+ N V++ LT D+++F L + ++AN+ RR+ IAE PT+AI+ V + N++V+ DE
Sbjct: 3 YANQPSVQITELTDDNVKFVLEDTELSVANSLRRVFIAETPTLAIDWVQLEANSTVLSDE 62
Query: 132 VLAHRLGLIPIIVDPRLFEYMSENDTSNEKNT 163
LAHR+GLIP+I D + D NT
Sbjct: 63 FLAHRIGLIPLISDDVVERLQYTRDLQRGANT 94
>gi|346972452|gb|EGY15904.1| DNA-directed RNA polymerase II subunit RPB3 [Verticillium dahliae
VdLs.17]
Length = 342
Score = 71.2 bits (173), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 62/212 (29%), Positives = 93/212 (43%), Gaps = 32/212 (15%)
Query: 69 LDHFCNNFRVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVI 128
LD+ V++ D + F+L + AN+ RR++ AE+P +AI+ V I NTSV+
Sbjct: 8 LDNEVGGPSVKISNTEADRVVFNLSNCHLSFANSLRRVIQAEVPIVAIDLVEIEANTSVL 67
Query: 129 QDEVLAHRLGLIPIIVDPRLFEYMSENDTSNEKNTIVFKLHVLCERGGPRLTVKTNELKW 188
DE +AHRLGLIP+ S E ++ + CE+ +VK
Sbjct: 68 ADEFIAHRLGLIPL--------------HSKEAASLHYSRDCDCEQYCDNCSVK------ 107
Query: 189 LPNGSELPLETKPDSNPSSKPRT----YTSFSSSQDLLPEFSNNPIRPMLDITIARLGPG 244
L L + S+ K SF + + +P L IA+L G
Sbjct: 108 ------LTLHARCTSDDIMKVYASDLVVDSFRQNNTVGNPVITDP--DGLGSLIAKLRRG 159
Query: 245 QEIELEAHAVKGIGKTHAKWSPVATAWYRMLP 276
QE+++ A KGI K HAKW P + + P
Sbjct: 160 QELKVTCIAKKGIAKEHAKWMPTSAVGFEYDP 191
>gi|299751420|ref|XP_001830255.2| DNA-directed RNA polymerase II polypeptide [Coprinopsis cinerea
okayama7#130]
gi|298409367|gb|EAU91402.2| DNA-directed RNA polymerase II polypeptide [Coprinopsis cinerea
okayama7#130]
Length = 360
Score = 70.9 bits (172), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 58/203 (28%), Positives = 95/203 (46%), Gaps = 21/203 (10%)
Query: 78 VEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRL 137
V V + KD + F L +D A R+++A++PT+AI+ V NTSV+ DE +AHRL
Sbjct: 10 VRVREVKKDKVNFVLENVDLA------RVVMADIPTVAIDLVEFEANTSVLPDEYIAHRL 63
Query: 138 GLIPIIVD--PRLFEYMSENDTSNEKN--TIVFKLHVLCERGGPRLTVKTNELKWLPNGS 193
G IP+I Y + ++ + + +L V C + V +N L+ +P
Sbjct: 64 GQIPLISTNCDEAIRYTRDCTCLSQCSYCAVQLRLDVAC-NDDTTMEVTSNHLEVVPLDD 122
Query: 194 ELPLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPMLDITIARLGPGQEIELEAHA 253
+ E + + + + + P N P P + I ++ GQE+ ++ A
Sbjct: 123 YMQEEIQHGEEKAKRTQWFGH--------PVGKNEPGTP--PVLICKIRKGQELRVKCIA 172
Query: 254 VKGIGKTHAKWSPVATAWYRMLP 276
KGI K HAKWSP + + P
Sbjct: 173 KKGIAKEHAKWSPCSAVSFEYDP 195
>gi|345328382|ref|XP_001511558.2| PREDICTED: DNA-directed RNA polymerase II subunit RPB3-like
[Ornithorhynchus anatinus]
Length = 234
Score = 70.9 bits (172), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 56/174 (32%), Positives = 77/174 (44%), Gaps = 29/174 (16%)
Query: 111 LPTMAIEKVLIANNTSVIQDEVLAHRLGLIPIIVDPRLFEYMSENDTSNEK----NTIVF 166
LPT I+ V I N+SV+ DE +AHRLGLIP+ D + + D + E+ ++ F
Sbjct: 3 LPT--IDWVQIDANSSVLHDEFIAHRLGLIPLTSDDIVDKLQYSRDCTCEEFCPECSVEF 60
Query: 167 KLHVLCERGGPRLTVKTNELKWLPNGSELPLETKPDSNPSSKPRTYTSFSSSQDLLPEFS 226
L V C R + + S+ PR S S+D P
Sbjct: 61 TLDVRCNEDQTRHVTSRDLI-------------------SNSPRVIPVTSRSRDNDP--- 98
Query: 227 NNPIRPMLDITIARLGPGQEIELEAHAVKGIGKTHAKWSPVATAWYRMLPEIVL 280
N DI I +L GQE+ L A+A KG GK H KW+P A + P+ L
Sbjct: 99 -NDYVEQDDILIVKLRKGQELRLRAYAKKGFGKEHTKWNPTAGVAFEYDPDNAL 151
>gi|25012925|gb|AAN71549.1| RH25219p [Drosophila melanogaster]
Length = 117
Score = 70.5 bits (171), Expect = 1e-09, Method: Composition-based stats.
Identities = 33/74 (44%), Positives = 52/74 (70%)
Query: 72 FCNNFRVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDE 131
+ N V++ LT D+++F L + ++AN+ RR+ IAE PT+AI+ V + N++V+ DE
Sbjct: 3 YANQPSVQITELTDDNVKFVLEDTELSVANSLRRVFIAETPTLAIDWVQLEANSTVLSDE 62
Query: 132 VLAHRLGLIPIIVD 145
LAHR+GLIP+I D
Sbjct: 63 FLAHRIGLIPLISD 76
>gi|300707120|ref|XP_002995782.1| hypothetical protein NCER_101243 [Nosema ceranae BRL01]
gi|239604995|gb|EEQ82111.1| hypothetical protein NCER_101243 [Nosema ceranae BRL01]
Length = 233
Score = 70.5 bits (171), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 53/190 (27%), Positives = 89/190 (46%), Gaps = 40/190 (21%)
Query: 84 TKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRLGLIPII 143
T + ++F L + ANA RRILI+E+PT+ I+ V I N + + DE+++HRLGL+P+
Sbjct: 9 TDNIIKFTLRDTYVSYANALRRILISEVPTVTIDLVEIEINNTSLPDEMISHRLGLVPLY 68
Query: 144 VDPRL-FEYMSENDTSNEKNTIVFKLHVLCERGGPRLTVKTNELKWLPNGSELPLETKPD 202
L F D +K ++ L+V N +++P+
Sbjct: 69 TKKDLVFRDDCACDDICDKCSVSLTLNV-------------------SNNTDMPMVV--- 106
Query: 203 SNPSSKPRTYTSFSSSQDLLPEFSNNPIRPMLDITIARLGPGQEIELEAHAVKGIGKTHA 262
T S D++ ++P+ I +LG Q +++ A KG+GK H+
Sbjct: 107 --------TCKDLKSQDDVV--IRSSPV-------ICKLGTRQNLKVICKAFKGVGKIHS 149
Query: 263 KWSPVATAWY 272
KWSPV+ +
Sbjct: 150 KWSPVSVVGF 159
>gi|149032428|gb|EDL87319.1| polymerase (RNA) II (DNA directed) polypeptide C, isoform CRA_d
[Rattus norvegicus]
Length = 165
Score = 70.5 bits (171), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 40/111 (36%), Positives = 64/111 (57%), Gaps = 4/111 (3%)
Query: 72 FCNNFRVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDE 131
+ N V + LT+++++F + D A+AN+ RR+ IAE+P +AI+ V I N+SV+ DE
Sbjct: 3 YANQPTVRITELTEENVKFIIENTDLAVANSIRRVFIAEVPIIAIDWVQIDANSSVLHDE 62
Query: 132 VLAHRLGLIPIIVDPRLFEYMSENDTSNE----KNTIVFKLHVLCERGGPR 178
+AHRLGLIP+ D + + D + E + ++ F L V C R
Sbjct: 63 FIAHRLGLIPLTSDDIVDKLQYSRDCTCEEFCPECSVEFTLDVRCNEDQTR 113
>gi|313126017|ref|YP_004036287.1| DNA-directed RNA polymerase subunit d [Halogeometricum borinquense
DSM 11551]
gi|448285857|ref|ZP_21477096.1| DNA-directed RNA polymerase subunit D [Halogeometricum borinquense
DSM 11551]
gi|312292382|gb|ADQ66842.1| DNA-directed RNA polymerase, subunit D [Halogeometricum borinquense
DSM 11551]
gi|445575887|gb|ELY30350.1| DNA-directed RNA polymerase subunit D [Halogeometricum borinquense
DSM 11551]
Length = 260
Score = 70.1 bits (170), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 60/213 (28%), Positives = 89/213 (41%), Gaps = 52/213 (24%)
Query: 72 FCNNFRVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDE 131
+F VE I F + G+ A+AN RR +IA++PT +I+ V N+SV+ DE
Sbjct: 1 MAEDFEVEFIERDDRKARFLVRGMTPAVANGIRRAMIADVPTFSIDTVRFVENSSVMFDE 60
Query: 132 VLAHRLGLIPIIVDPRLFEYMSENDTSNEKNTIVFKLHVLCERGGPRLTVKTNELKWLPN 191
++ RLGL+P+ FE + +T+ L V GP
Sbjct: 61 MIGLRLGLVPLTTPLDDFE---------QGDTVTLALDVE----GP-------------- 93
Query: 192 GSELPLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPMLD-ITIARLGPGQEIELE 250
T++S E S+ ++P D + I L GQ +ELE
Sbjct: 94 --------------------ATAYSGD----IETSDELVKPAEDNVPIIELKQGQRLELE 129
Query: 251 AHAVKGIGKTHAKWSPVATAWYRMLPEIVLLED 283
A AV G GK+HAK YR L + ++ D
Sbjct: 130 ADAVLGDGKSHAKHQGGVAVGYRHLHRVEVVGD 162
>gi|448414206|ref|ZP_21577345.1| DNA-directed RNA polymerase subunit D [Halosarcina pallida JCM
14848]
gi|445682499|gb|ELZ34916.1| DNA-directed RNA polymerase subunit D [Halosarcina pallida JCM
14848]
Length = 260
Score = 70.1 bits (170), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 60/221 (27%), Positives = 92/221 (41%), Gaps = 52/221 (23%)
Query: 72 FCNNFRVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDE 131
+F VE I F + G+ A+AN RR +IA++PT +++ V N+SV+ DE
Sbjct: 1 MAEDFEVEFIERDDRKARFLVRGMTPAVANGIRRAMIADVPTFSVDTVRFVENSSVMFDE 60
Query: 132 VLAHRLGLIPIIVDPRLFEYMSENDTSNEKNTIVFKLHVLCERGGPRLTVKTNELKWLPN 191
++ RLGL+P+ D FE E + + L V GP
Sbjct: 61 MIGLRLGLVPLTTDLGDFE---------EGDVVTLALDVE----GP-------------- 93
Query: 192 GSELPLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPM-LDITIARLGPGQEIELE 250
T++S E S+ ++P ++ I L GQ +ELE
Sbjct: 94 --------------------ATAYSGD----IETSDGLVQPADQNVPIIELKEGQRLELE 129
Query: 251 AHAVKGIGKTHAKWSPVATAWYRMLPEIVLLEDVEDEDAEK 291
A AV G GK HAK YR L + ++ D + D ++
Sbjct: 130 ADAVLGRGKEHAKHQGGVAVGYRHLHRVEVVGDANEFDEQE 170
>gi|408391899|gb|EKJ71265.1| hypothetical protein FPSE_08504 [Fusarium pseudograminearum CS3096]
Length = 340
Score = 69.7 bits (169), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 58/194 (29%), Positives = 87/194 (44%), Gaps = 35/194 (18%)
Query: 88 MEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRLGLIPIIVDPR 147
++F+L + + ANA RR++ AE+PT+AI+ V I N+SV+ DE +AHRLGLIP+ D +
Sbjct: 30 VDFELSKTNLSFANAVRRVIQAEVPTIAIDLVEIETNSSVLADEFIAHRLGLIPL--DSK 87
Query: 148 L---FEYMSENDTSN--EKNTIVFKLHVLCERGGPRLTVKTNELKWLPNGSELPLETKPD 202
Y + D E+ ++ LH C +K + +G
Sbjct: 88 GVAELNYSRDCDCEQYCEQCSVTLTLHAKCTS---DEIMKVYARDLVVDG---------- 134
Query: 203 SNPSSKPRTYTSFSSSQDLLPEFSNNPIRPMLDITIARLGPGQEIELEAHAVKGIGKTHA 262
R S S + PE IA+L QE+++ A KGI K HA
Sbjct: 135 -------RHGNSVGSPMIMDPEGYG--------CLIAKLRKHQELKISCIAKKGIAKEHA 179
Query: 263 KWSPVATAWYRMLP 276
KW P + + P
Sbjct: 180 KWMPTSAVGFEYDP 193
>gi|332017912|gb|EGI58566.1| DNA-directed RNA polymerase II subunit RPB3 [Acromyrmex echinatior]
Length = 256
Score = 69.3 bits (168), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 57/210 (27%), Positives = 93/210 (44%), Gaps = 41/210 (19%)
Query: 72 FCNNFRVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDE 131
+ N V + LT+++++F + + ++AN+ RR+ IAE PTMAI+ + + N++V+
Sbjct: 3 YANQPSVHISDLTEENVKFQVEDTELSVANSMRRVFIAETPTMAIDWIQLEANSTVV--- 59
Query: 132 VLAHRLGLIPIIVDPRLFEYMSENDTSNEKNTIVFKLHVLCERGGPRLTVKTNELKWLPN 191
I D + ++ E ++ F L V C R V T + K
Sbjct: 60 ------DRIQYTRDCQCMDFCPEC-------SVEFTLDVKCTEEQTR-HVTTADFK---- 101
Query: 192 GSELPLETKPDSNPSSKPRTYTSFSSS-QDLLPEFSNNPIRPMLDITIARLGPGQEIELE 250
SS PR S +D E+ +I I +L GQE++L
Sbjct: 102 --------------SSDPRVLPVTSRHREDDASEYGETD-----EILIVKLRKGQELKLR 142
Query: 251 AHAVKGIGKTHAKWSPVATAWYRMLPEIVL 280
A+A KG GK HAKW+P A + P+ +
Sbjct: 143 AYAKKGFGKEHAKWNPTAGVSFEYDPDNTM 172
>gi|296090458|emb|CBI40277.3| unnamed protein product [Vitis vinifera]
Length = 206
Score = 69.3 bits (168), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 53/144 (36%), Positives = 73/144 (50%), Gaps = 13/144 (9%)
Query: 215 FSSSQDLLP-EFSNNPIRPMLD---ITIARLGPGQEIELEAHAVKGIGKTHAKWSPVATA 270
SS ++P +FS++ D I I +L GQE+ L A A KGIGK HAKWSP AT
Sbjct: 14 ISSDHTVVPVDFSDSSGYDSADKKGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPAATV 73
Query: 271 WYRMLPEIVLLEDVED----EDAEKLVKTCPVNVFDIEDIGSGKKRATVAQPRACTLCRE 326
+ PEI + ED+ + E+ V++ P VFDI+ + ++ VA A T E
Sbjct: 74 TFMYEPEIHINEDLMESLTLEEKTSWVESSPTKVFDID---ASSQQVVVADAEAYTYDDE 130
Query: 327 CLRCGEEWEK--RVSIRRVKDHFI 348
L+ E K V I +D FI
Sbjct: 131 VLKKAEAMGKPGLVEIYAKEDSFI 154
>gi|118431575|ref|NP_148137.2| DNA-directed RNA polymerase subunit D [Aeropyrum pernix K1]
gi|150421654|sp|Q9YB53.2|RPOD_AERPE RecName: Full=DNA-directed RNA polymerase subunit D
gi|116062900|dbj|BAA80745.2| DNA-directed RNA polymerase subunit D [Aeropyrum pernix K1]
Length = 286
Score = 69.3 bits (168), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 52/207 (25%), Positives = 96/207 (46%), Gaps = 40/207 (19%)
Query: 78 VEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRL 137
VEV+ L + + G NA RR +++++PTMA++ I +NT+ + DE++AHRL
Sbjct: 9 VEVVELDSLRVRLRIRGYPVVFVNAIRRTVLSDVPTMAVDYAYIFDNTTAVYDEMVAHRL 68
Query: 138 GLIPIIVDPRLFEYMSENDTS----NEKNTIVFKLHVLCERGGPRLTVKTNELKWLPNGS 193
GL+ + + + +Y + + +E++ V
Sbjct: 69 GLVVLDSNEAVEKYRRPEECAGKEPSEEDCFV---------------------------- 100
Query: 194 ELPLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPMLDIT-IARLGPGQEIELEAH 252
E+ LE + D+ + + ++ DL S+ ++P+ T + + PGQ I ++A
Sbjct: 101 EVSLEAEVDAEGETG-----RYITAGDL--SISDPQVKPVYPETPLIYVAPGQRIHVQAF 153
Query: 253 AVKGIGKTHAKWSPVATAWYRMLPEIV 279
A G GK H KWSP + + R P ++
Sbjct: 154 ARLGRGKEHTKWSPASLSVLRYTPILI 180
>gi|46109130|ref|XP_381623.1| hypothetical protein FG01447.1 [Gibberella zeae PH-1]
Length = 337
Score = 69.3 bits (168), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 57/192 (29%), Positives = 85/192 (44%), Gaps = 31/192 (16%)
Query: 88 MEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRLGLIPIIVDPR 147
++F+L + + ANA RR++ AE+PT+AI+ V I N+SV+ DE +AHRLGLIP+
Sbjct: 27 VDFELSKTNLSFANAVRRVIQAEVPTIAIDLVEIETNSSVLADEFIAHRLGLIPLDSKGV 86
Query: 148 L-FEYMSENDTSN--EKNTIVFKLHVLCERGGPRLTVKTNELKWLPNGSELPLETKPDSN 204
Y + D E+ ++ LH C +K + +G
Sbjct: 87 AELNYSRDCDCEQYCEQCSVTLTLHAKCTS---DEIMKVYARDLVVDG------------ 131
Query: 205 PSSKPRTYTSFSSSQDLLPEFSNNPIRPMLDITIARLGPGQEIELEAHAVKGIGKTHAKW 264
R S S + PE IA+L QE+++ A KGI K HAKW
Sbjct: 132 -----RHGNSVGSPMIMDPEGYG--------CLIAKLRKHQELKISCIAKKGIAKEHAKW 178
Query: 265 SPVATAWYRMLP 276
P + + P
Sbjct: 179 MPTSAVGFEYDP 190
>gi|409722495|ref|ZP_11269943.1| DNA-directed RNA polymerase subunit D [Halococcus hamelinensis
100A6]
gi|448724486|ref|ZP_21706993.1| DNA-directed RNA polymerase subunit D [Halococcus hamelinensis
100A6]
gi|445785803|gb|EMA36589.1| DNA-directed RNA polymerase subunit D [Halococcus hamelinensis
100A6]
Length = 249
Score = 69.3 bits (168), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 57/215 (26%), Positives = 91/215 (42%), Gaps = 52/215 (24%)
Query: 73 CNNFRVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEV 132
++ VE I + + + F + GI A AN RR ++A++PT++I+ V + N+SV+ DE
Sbjct: 3 TTDYEVEFIDVDEREARFLVRGITPAFANGIRRAMVADVPTLSIDTVRVIENSSVMFDEQ 62
Query: 133 LAHRLGLIPIIVDPRLFEYMSENDTSNEKNTIVFKLHVLCERGGPRLTVKTNELKWLPNG 192
+ HRLG++P+ P FE ++ L V
Sbjct: 63 IGHRLGMVPLSAPPDEFEV---------GESVTLALDV---------------------- 91
Query: 193 SELPLETKPDSNPSSKPRT-YTSFSSSQDLLPEFSNNPIRPMLDITIARLGPGQEIELEA 251
S P T Y+ S D + E + + P++D L Q +E+EA
Sbjct: 92 --------------SGPETAYSGDLQSADSMVEPAEQNV-PIID-----LKEDQRLEVEA 131
Query: 252 HAVKGIGKTHAKWSPVATAWYRMLPEIVLLEDVED 286
AV GKTHAK YR L + + D ++
Sbjct: 132 EAVLDSGKTHAKHQGGVAVGYRHLQHVEVAGDADE 166
>gi|322710646|gb|EFZ02220.1| RNA polymerase II subunit 3 [Metarhizium anisopliae ARSEF 23]
Length = 362
Score = 69.3 bits (168), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 61/204 (29%), Positives = 90/204 (44%), Gaps = 31/204 (15%)
Query: 76 FRVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAH 135
+R E I ++F L + + AN+ RRI+ AE+PT+AI+ V + NTSV+ DE +AH
Sbjct: 26 WRPEFIAADSTRVDFALSRTNLSFANSIRRIIQAEVPTIAIDLVEVEVNTSVLADEFIAH 85
Query: 136 RLGLIPIIVDP-RLFEYMSENDTSN--EKNTIVFKLHVLCERGGPRLTVKTNELKWLPNG 192
RLGLIP+ Y + D E+ ++ LH C +K + +G
Sbjct: 86 RLGLIPLNAKGVNELNYSRDCDCEQYCEQCSVTLTLHARCTS---DEIMKVYARDLIVDG 142
Query: 193 SELPLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPMLDITIARLGPGQEIELEAH 252
+SQ P N+P + IA+L QE++L
Sbjct: 143 RH----------------------ASQVGTPVI-NDP--EGMGCLIAKLRKDQELKLTCI 177
Query: 253 AVKGIGKTHAKWSPVATAWYRMLP 276
A KGI K HAKW P + + P
Sbjct: 178 AKKGIAKEHAKWMPTSAVGFEYDP 201
>gi|358397037|gb|EHK46412.1| hypothetical protein TRIATDRAFT_153717, partial [Trichoderma
atroviride IMI 206040]
Length = 377
Score = 68.9 bits (167), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 58/192 (30%), Positives = 87/192 (45%), Gaps = 31/192 (16%)
Query: 88 MEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRLGLIPI---IV 144
++F+L + ANA RRI+ AE+PT+AI+ V I N+SV+ DE +AHRLGLIP+ V
Sbjct: 30 VDFELSRTNLPFANALRRIIQAEVPTIAIDLVEIEVNSSVLADEFIAHRLGLIPLDSKGV 89
Query: 145 DPRLFEYMSENDTSNEKNTIVFKLHVLCERGGPRLTVKTNELKWLPNGSELPLETKPDSN 204
+ + + + E ++ LH C +K + +G
Sbjct: 90 NELNYSRDCDCEQYCEHCSVSLTLHAKCTS---DEIMKVYARDLVVDG------------ 134
Query: 205 PSSKPRTYTSFSSSQDLLPEFSNNPIRPMLDITIARLGPGQEIELEAHAVKGIGKTHAKW 264
R S ++ PE L IA+L GQE+++ A KGI K HAKW
Sbjct: 135 -----RHAGSVGNAVITDPE--------GLGCLIAKLRKGQELKITCIAKKGIAKEHAKW 181
Query: 265 SPVATAWYRMLP 276
P + + P
Sbjct: 182 MPTSAVGFEYDP 193
>gi|395506009|ref|XP_003757328.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB3 isoform 2
[Sarcophilus harrisii]
Length = 252
Score = 68.9 bits (167), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 58/213 (27%), Positives = 87/213 (40%), Gaps = 50/213 (23%)
Query: 72 FCNNFRVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDE 131
+ N V + LT ++++F + D A+AN+ RR+ IAE+P
Sbjct: 3 YANQPTVRITELTDENVKFIIENTDLAVANSIRRVFIAEVPI------------------ 44
Query: 132 VLAHRLGLIPIIVDPRLFEYMSENDTSNEK----NTIVFKLHVLCERGGPRLTVKTNELK 187
+GLIP+ D + + D + E+ ++ F L V C R + +
Sbjct: 45 -----IGLIPLTSDDIVDKLQYSRDCTCEEFCPECSVEFTLDVRCNEDQTRHVTSRDLI- 98
Query: 188 WLPNGSELPLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPMLDITIARLGPGQEI 247
S+ PR S S+D P N DI I +L GQE+
Sbjct: 99 ------------------SNTPRVIPVTSRSRDNDP----NDYVEQDDILIVKLRKGQEL 136
Query: 248 ELEAHAVKGIGKTHAKWSPVATAWYRMLPEIVL 280
L A+A KGIGK HAKW+P A + P+ L
Sbjct: 137 RLRAYAKKGIGKEHAKWNPTAGVAFEYDPDNAL 169
>gi|448733727|ref|ZP_21715969.1| DNA-directed RNA polymerase subunit D [Halococcus salifodinae DSM
8989]
gi|445802247|gb|EMA52554.1| DNA-directed RNA polymerase subunit D [Halococcus salifodinae DSM
8989]
Length = 248
Score = 68.9 bits (167), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 58/201 (28%), Positives = 88/201 (43%), Gaps = 52/201 (25%)
Query: 87 DMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRLGLIPIIVDP 146
D F + GI A AN RR ++A++PT++I+ V + N+SV+ DE + HRLG+IP+ P
Sbjct: 16 DARFLVRGITPAFANGIRRAMVADVPTLSIDTVRVVENSSVMFDEQIGHRLGMIPLNAPP 75
Query: 147 RLFEYMSENDTSNEKNTIVFKLHVLCERGGPRLTVKTNELKWLPNGSELPLETKPDSNPS 206
FE S E T+ + + PD+
Sbjct: 76 NEFE-------SGEGVTLGIDV------------------------------SGPDT--- 95
Query: 207 SKPRTYTSFSSSQDLLPEFSNNPIRPMLD-ITIARLGPGQEIELEAHAVKGIGKTHAKWS 265
+ S DL+ S++ + P D + I L Q +E EA AV GKTHAK
Sbjct: 96 ---------AYSGDLVS--SDSVVEPAEDNVPIIDLKEDQRLEAEAEAVLDTGKTHAKHQ 144
Query: 266 PVATAWYRMLPEIVLLEDVED 286
YR L ++ ++ D E+
Sbjct: 145 GGVAVGYRHLQKVEVVGDREE 165
>gi|402467489|gb|EJW02781.1| hypothetical protein EDEG_02821 [Edhazardia aedis USNM 41457]
Length = 244
Score = 68.6 bits (166), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 57/204 (27%), Positives = 97/204 (47%), Gaps = 36/204 (17%)
Query: 76 FRVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAH 135
++ VI T + + L A AN+ RR+LI+E+P++A + +LI NT+V+ D+ +AH
Sbjct: 1 MQLTVIEQTDNVLSLRLEKTTIAFANSLRRVLISEIPSIAFDLILIKENTTVLPDDYIAH 60
Query: 136 RLGLIPIIVDPRLFEYMSENDTSNEKNTIVFKLHVLCERGGPRLTVKTNELKWLPNGSEL 195
R+GLIPI T++ K+ ++ C+ ++ + ++
Sbjct: 61 RIGLIPIF------------HTNDPKHNLISHTECHCQGYCESCSITCDLVQ-------- 100
Query: 196 PLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPML--DITIARLGPGQEIELEAHA 253
+N +S+ TS S LLP+ N R M +I I +L Q++ L A A
Sbjct: 101 -------ANTTSECLLVTSSS----LLPK---NFERKMFNENIPIVKLQRRQKLCLTAVA 146
Query: 254 VKGIGKTHAKWSPVATAWYRMLPE 277
KGI K ++KW V + P+
Sbjct: 147 RKGIAKDNSKWQVVNNVGFEYDPD 170
>gi|118490838|ref|XP_001238728.1| rna polymerase ii b3 subunit [Eimeria tenella strain Houghton]
gi|109238511|emb|CAK51475.1| rna polymerase ii b3 subunit [Eimeria tenella]
Length = 147
Score = 68.6 bits (166), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 32/65 (49%), Positives = 46/65 (70%)
Query: 78 VEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRL 137
+ V L+ + F L DA+IANA RR++I+E+PT+AI+ V + NTSV+ DE + HRL
Sbjct: 44 IRVTELSNKVVRFTLSNCDASIANALRRVMISEVPTLAIDLVTVFENTSVLHDEYIVHRL 103
Query: 138 GLIPI 142
GL+PI
Sbjct: 104 GLLPI 108
>gi|448409409|ref|ZP_21574707.1| DNA-directed RNA polymerase subunit D [Halosimplex carlsbadense
2-9-1]
gi|445673012|gb|ELZ25579.1| DNA-directed RNA polymerase subunit D [Halosimplex carlsbadense
2-9-1]
Length = 255
Score = 68.6 bits (166), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 57/210 (27%), Positives = 88/210 (41%), Gaps = 44/210 (20%)
Query: 75 NFRVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLA 134
++ VE + + F + GI A AN RR ++A++PT +I+++ + N+SV+ DE +
Sbjct: 3 DYEVEFVERGDREARFLVRGITPAFANGIRRAMVADVPTFSIDELRVVENSSVMFDEQIG 62
Query: 135 HRLGLIPIIVDPRLFEYMSENDTSNEKNTIVFKLHVLCERGGPRLTVKTNELKWLPNGSE 194
RLGL+P+ FE E + L V
Sbjct: 63 LRLGLVPLTTPEGEFEIGDE---------VTLALDV------------------------ 89
Query: 195 LPLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPMLD-ITIARLGPGQEIELEAHA 253
PS + T T + S D++ S+ +RP D I I L GQ +E EA A
Sbjct: 90 --------EGPSREETTETVTAYSGDIVS--SDEMVRPANDNIPIIDLKAGQRLEAEADA 139
Query: 254 VKGIGKTHAKWSPVATAWYRMLPEIVLLED 283
V G+ HAK YR L + ++ D
Sbjct: 140 VLDRGRDHAKHQGGVAVGYRHLQRVEVVGD 169
>gi|336252152|ref|YP_004595259.1| DNA-directed RNA polymerase subunit D [Halopiger xanaduensis SH-6]
gi|335336141|gb|AEH35380.1| DNA-directed RNA polymerase subunit D [Halopiger xanaduensis SH-6]
Length = 249
Score = 68.6 bits (166), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 60/213 (28%), Positives = 87/213 (40%), Gaps = 49/213 (23%)
Query: 72 FCNNFRVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDE 131
+ VE + + F + G+ A AN RR ++A++PTMAI+ V N+SV+ DE
Sbjct: 1 MSEEYDVEFVERDDREARFLVRGVTPAFANGIRRAMLADVPTMAIDTVRFVENSSVMFDE 60
Query: 132 VLAHRLGLIPIIVDPRLFEYMSENDTSNEKNTIVFKLHVLCERGGPRLTVKTNELKWLPN 191
LA RLGL+P+ P D E T+ + V GP T + +L+
Sbjct: 61 QLALRLGLVPLTTPP--------EDEFGEDATVTLSIDV----EGP-ATAYSGDLE---- 103
Query: 192 GSELPLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPMLDITIARLGPGQEIELEA 251
SS + + P N PI + D Q +E EA
Sbjct: 104 ------------------------SSDELVQPADENVPIIELKD--------DQRLEAEA 131
Query: 252 HAVKGIGKTHAKWSPVATAWYRMLPEIVLLEDV 284
AV GK HAK YR L +V+ +D+
Sbjct: 132 DAVLDRGKDHAKHQGAVAVGYRHLQRVVVEDDL 164
>gi|55376999|ref|YP_134849.1| DNA-directed RNA polymerase subunit D [Haloarcula marismortui ATCC
43049]
gi|344211110|ref|YP_004795430.1| DNA-directed RNA polymerase subunit D [Haloarcula hispanica ATCC
33960]
gi|448640850|ref|ZP_21677637.1| DNA-directed RNA polymerase subunit D [Haloarcula sinaiiensis ATCC
33800]
gi|448651240|ref|ZP_21680309.1| DNA-directed RNA polymerase subunit D [Haloarcula californiae ATCC
33799]
gi|448667520|ref|ZP_21686020.1| DNA-directed RNA polymerase subunit D [Haloarcula amylolytica JCM
13557]
gi|448678705|ref|ZP_21689712.1| DNA-directed RNA polymerase subunit D [Haloarcula argentinensis DSM
12282]
gi|1350858|sp|Q00813.1|RPOD_HALMA RecName: Full=DNA-directed RNA polymerase subunit D
gi|148773|gb|AAA73212.1| ribosomal protein HmaRp-alpha subunit [Haloarcula marismortui]
gi|55229724|gb|AAV45143.1| DNA-directed RNA polymerase subunit D [Haloarcula marismortui ATCC
43049]
gi|343782465|gb|AEM56442.1| DNA-directed RNA polymerase subunit D [Haloarcula hispanica ATCC
33960]
gi|445761375|gb|EMA12623.1| DNA-directed RNA polymerase subunit D [Haloarcula sinaiiensis ATCC
33800]
gi|445770088|gb|EMA21156.1| DNA-directed RNA polymerase subunit D [Haloarcula amylolytica JCM
13557]
gi|445770767|gb|EMA21825.1| DNA-directed RNA polymerase subunit D [Haloarcula californiae ATCC
33799]
gi|445772692|gb|EMA23737.1| DNA-directed RNA polymerase subunit D [Haloarcula argentinensis DSM
12282]
Length = 259
Score = 68.6 bits (166), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 60/220 (27%), Positives = 96/220 (43%), Gaps = 53/220 (24%)
Query: 72 FCNNFRVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDE 131
++ VE + + + + GI A AN RR ++A++PT +I+ V + NTSV+ +E
Sbjct: 1 MTQDYEVEFVERGEREARILVRGITPAFANGIRRAMVADVPTFSIDTVRVIENTSVMFNE 60
Query: 132 VLAHRLGLIPIIVDPRLFEYMSENDTSNEKNTIVFKLHVLCERGGPRLTVKTNELKWLPN 191
+ RLGL+P+ D FE
Sbjct: 61 QIGLRLGLVPLTTDLDDFEI---------------------------------------- 80
Query: 192 GSELPLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPMLDITIARLGPGQEIELEA 251
G E+ L D PS+ Y+S S D + E +++ I P++D L GQ +E+EA
Sbjct: 81 GDEVTLSLSVDG-PST---AYSSDLVSSDPMVEAADDNI-PIID-----LKEGQRLEVEA 130
Query: 252 HAVKGIGKTHAKWSPVATAWYRMLPEIVLLEDV---EDED 288
AV G+ HAK YR L ++ ++ D+ ED+D
Sbjct: 131 DAVLDTGREHAKHQGGVAVGYRHLQQVEVVGDLGEFEDDD 170
>gi|254573314|ref|XP_002493766.1| RNA polymerase II third largest subunit B44, part of central core
[Komagataella pastoris GS115]
gi|238033565|emb|CAY71587.1| RNA polymerase II third largest subunit B44, part of central core
[Komagataella pastoris GS115]
gi|328354411|emb|CCA40808.1| DNA-directed RNA polymerase II subunit RPB3 .5 [Komagataella
pastoris CBS 7435]
Length = 304
Score = 68.6 bits (166), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 30/67 (44%), Positives = 49/67 (73%)
Query: 77 RVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHR 136
+V +I D++E L ++ ++AN+ RR ++AE+PT+AI+ V I NTSV+ DE ++HR
Sbjct: 6 KVNIINAQDDEVELMLSDVNLSLANSLRRTMLAEVPTLAIDLVEIKMNTSVLADEFISHR 65
Query: 137 LGLIPII 143
LGLIP++
Sbjct: 66 LGLIPLV 72
>gi|340517857|gb|EGR48100.1| predicted protein [Trichoderma reesei QM6a]
Length = 375
Score = 68.6 bits (166), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 59/218 (27%), Positives = 95/218 (43%), Gaps = 37/218 (16%)
Query: 65 NSLQLDHFCNNFRVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANN 124
+S+ +D +V++ ++F+L + ANA RR++ AE+PT+AI+ V + N
Sbjct: 7 DSMAIDGEPEQPQVKISAADSTRVDFELSRTNLPFANALRRVIQAEVPTIAIDLVEMEVN 66
Query: 125 TSVIQDEVLAHRLGLIPI---IVDPRLFEYMSENDTSNEKNTIVFKLHVLCERGGPRLTV 181
+SV+ DE +AHRLGLIP+ V+ + + + E+ ++ LH C + V
Sbjct: 67 SSVLADEFIAHRLGLIPLDSKGVNELNYSRDCDCEQYCEQCSVSLTLHAKCTS-DEIMKV 125
Query: 182 KTNEL---KWLPNGSELPLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPMLDITI 238
+L N P+ T PD L I
Sbjct: 126 YARDLVVDGRHANSVGSPIITDPDG------------------------------LGCLI 155
Query: 239 ARLGPGQEIELEAHAVKGIGKTHAKWSPVATAWYRMLP 276
A+L QE+++ A KGI K HAKW P + + P
Sbjct: 156 AKLRKDQELKITCIAKKGIAKEHAKWMPTSAVGFEYDP 193
>gi|448728476|ref|ZP_21710804.1| DNA-directed RNA polymerase subunit D [Halococcus saccharolyticus
DSM 5350]
gi|445796958|gb|EMA47443.1| DNA-directed RNA polymerase subunit D [Halococcus saccharolyticus
DSM 5350]
Length = 248
Score = 68.6 bits (166), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 54/201 (26%), Positives = 89/201 (44%), Gaps = 52/201 (25%)
Query: 87 DMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRLGLIPIIVDP 146
D F + GI A AN RR ++A++PT++++ V + N+SV+ DE + HRLG++P+ P
Sbjct: 16 DARFLVRGITPAFANGIRRAMVADVPTLSVDTVRVVENSSVMFDEQIGHRLGMVPLSAPP 75
Query: 147 RLFEYMSENDTSNEKNTIVFKLHVLCERGGPRLTVKTNELKWLPNGSELPLETKPDSNPS 206
FE +++ L V + PD+
Sbjct: 76 NEFE---------PDDSVTLGLDV----------------------------SGPDT--- 95
Query: 207 SKPRTYTSFSSSQDLLPEFSNNPIRPMLD-ITIARLGPGQEIELEAHAVKGIGKTHAKWS 265
+ S DL+ S++ + P D + I L Q +E+EA AV GK+HAK
Sbjct: 96 ---------AYSGDLVS--SDSVVEPAEDNVPIIELKEDQRLEVEAEAVLDTGKSHAKHQ 144
Query: 266 PVATAWYRMLPEIVLLEDVED 286
YR L ++ ++ D E+
Sbjct: 145 GGVAVGYRHLQKVEVVGDREE 165
>gi|149032427|gb|EDL87318.1| polymerase (RNA) II (DNA directed) polypeptide C, isoform CRA_c
[Rattus norvegicus]
Length = 92
Score = 68.2 bits (165), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 33/74 (44%), Positives = 51/74 (68%)
Query: 72 FCNNFRVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDE 131
+ N V + LT+++++F + D A+AN+ RR+ IAE+P +AI+ V I N+SV+ DE
Sbjct: 3 YANQPTVRITELTEENVKFIIENTDLAVANSIRRVFIAEVPIIAIDWVQIDANSSVLHDE 62
Query: 132 VLAHRLGLIPIIVD 145
+AHRLGLIP+ D
Sbjct: 63 FIAHRLGLIPLTSD 76
>gi|448368976|ref|ZP_21555743.1| DNA-directed RNA polymerase subunit D [Natrialba aegyptia DSM
13077]
gi|445651519|gb|ELZ04427.1| DNA-directed RNA polymerase subunit D [Natrialba aegyptia DSM
13077]
Length = 249
Score = 68.2 bits (165), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 66/219 (30%), Positives = 93/219 (42%), Gaps = 50/219 (22%)
Query: 76 FRVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAH 135
+ VE + D F + GI A AN RR ++A++PTMAI+ V N+SV+ DE LA
Sbjct: 5 YDVEFVEREDRDARFLVRGITPAFANGIRRAMLADVPTMAIDTVRFVENSSVMFDEQLAL 64
Query: 136 RLGLIPIIVDPRLFEYMSENDTSNEKNTIVFKLHVLCERGGPRLTVKTNELKWLPNGSEL 195
RLGL+P+ P E+ E +T+ + V GP T + +L
Sbjct: 65 RLGLVPLSTPPE-GEF-------GEDDTVTLSIDV----EGP-ATAYSGDL--------- 102
Query: 196 PLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPMLDITIARLGPGQEIELEAHAVK 255
SS + + P N PI + D Q +E EA AV
Sbjct: 103 -------------------ISSDELVQPADENVPIIDLKD--------DQRLEAEADAVL 135
Query: 256 GIGKTHAKWSPVATAWYRMLPEIVLLEDV-EDEDAEKLV 293
GK HAK YR L + +ED+ E ED+E +
Sbjct: 136 DRGKDHAKHQGGVAVGYRHLQRVAAVEDLPEFEDSESRI 174
>gi|448583259|ref|ZP_21646615.1| DNA-directed RNA polymerase subunit D [Haloferax gibbonsii ATCC
33959]
gi|445729488|gb|ELZ81083.1| DNA-directed RNA polymerase subunit D [Haloferax gibbonsii ATCC
33959]
Length = 259
Score = 68.2 bits (165), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 61/219 (27%), Positives = 91/219 (41%), Gaps = 50/219 (22%)
Query: 73 CNNFRVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEV 132
N+F+VE I F G+ A+AN RR ++A++PT +IE V NTSV+ DE+
Sbjct: 2 VNDFQVEFIEREDRRARFVARGLTPALANGIRRAMVADVPTFSIETVRFVENTSVMFDEM 61
Query: 133 LAHRLGLIPIIVDPRLFEYMSENDTSNEKNTIVFKLHVLCERGGPRLTVKTNELKWLPNG 192
+ RLGL+P+ FE +T+ L V GP T + +++
Sbjct: 62 IGLRLGLVPLTTPLDDFE---------PGDTVTVALEV----DGP-ATAYSGDIE----- 102
Query: 193 SELPLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPMLDITIARLGPGQEIELEAH 252
S+ ++P N P I L GQ +E EA
Sbjct: 103 -----------------------SADDMVVPADENIP--------IIELKEGQRLEFEAD 131
Query: 253 AVKGIGKTHAKWSPVATAWYRMLPEIVLLEDVEDEDAEK 291
AV G GK HAK YR L + ++ D + D ++
Sbjct: 132 AVLGYGKDHAKNQGGVAVGYRHLQRVEVVGDAGEFDEQE 170
>gi|358378283|gb|EHK15965.1| hypothetical protein TRIVIDRAFT_195864 [Trichoderma virens Gv29-8]
Length = 338
Score = 68.2 bits (165), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 60/197 (30%), Positives = 91/197 (46%), Gaps = 41/197 (20%)
Query: 88 MEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRLGLIPIIVDPR 147
++F+L + ANA RRI+ AE+PT+AI+ V I N+SV+ DE +AHRLGLIP+
Sbjct: 30 VDFELSRTNLPFANALRRIIQAEVPTIAIDLVEIEVNSSVLADEFIAHRLGLIPL----- 84
Query: 148 LFEYMSENDTSNEKNTIVFKLHVLCERGGPRLTVKTNELKWLPNGSELPLETKPDSNPSS 207
S N + + CE+ + +V L L K S+
Sbjct: 85 ---------DSKGVNELNYSRDCDCEQYCEQCSVS------------LTLHAKCTSDEIM 123
Query: 208 KPRTYTSFSSSQDLLPE--FSNNPIRPM------LDITIARLGPGQEIELEAHAVKGIGK 259
K ++DL+ + +N+ P+ L IA+L QE+++ A KGI K
Sbjct: 124 K-------VYARDLVADGRHANSVGTPIITDPEGLGCLIAKLRKDQELKITCIAKKGIAK 176
Query: 260 THAKWSPVATAWYRMLP 276
HAKW P + + P
Sbjct: 177 EHAKWMPTSAVGFEYDP 193
>gi|389848214|ref|YP_006350453.1| DNA-directed RNA polymerase subunit D [Haloferax mediterranei ATCC
33500]
gi|448618422|ref|ZP_21666659.1| DNA-directed RNA polymerase subunit D [Haloferax mediterranei ATCC
33500]
gi|388245520|gb|AFK20466.1| DNA-directed RNA polymerase subunit D [Haloferax mediterranei ATCC
33500]
gi|445746793|gb|ELZ98251.1| DNA-directed RNA polymerase subunit D [Haloferax mediterranei ATCC
33500]
Length = 260
Score = 67.8 bits (164), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 60/211 (28%), Positives = 88/211 (41%), Gaps = 50/211 (23%)
Query: 73 CNNFRVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEV 132
N+F VE I F + G+ A+AN RR ++A++PT +I+ V NTSV+ DE+
Sbjct: 2 ANDFEVEFIEREDRRARFVVNGLTPALANGIRRAMVADVPTFSIDTVRFVENTSVMFDEM 61
Query: 133 LAHRLGLIPIIVDPRLFEYMSENDTSNEKNTIVFKLHVLCERGGPRLTVKTNELKWLPNG 192
+ RLGL+P+ FE DT + V E GP T + +++
Sbjct: 62 IGLRLGLVPLTTPLDEFE---PGDT----------VTVALEVDGP-ATAYSGDIE----- 102
Query: 193 SELPLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPMLDITIARLGPGQEIELEAH 252
S+ + ++P N P I L GQ +E EA
Sbjct: 103 -----------------------SADEMVVPADENIP--------IIELKEGQRLEFEAD 131
Query: 253 AVKGIGKTHAKWSPVATAWYRMLPEIVLLED 283
AV G GK HAK YR L + ++ D
Sbjct: 132 AVLGYGKDHAKNQGGVAVGYRHLQRVEVVGD 162
>gi|330040504|ref|XP_003239937.1| DNA-directed RNA polymerase II [Cryptomonas paramecium]
gi|327206863|gb|AEA39039.1| DNA-directed RNA polymerase II [Cryptomonas paramecium]
Length = 301
Score = 67.8 bits (164), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 50/177 (28%), Positives = 85/177 (48%), Gaps = 27/177 (15%)
Query: 101 NAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRLGLIPIIVDPRLFEYMSENDTSNE 160
N+ RR ++ ++PT++++ V I N+S++ DE +AHRL L+P+ D+ N
Sbjct: 24 NSLRRTIMGDMPTLSVDLVYIEKNSSLLHDEFIAHRLSLLPL-------------DSQNI 70
Query: 161 KNTIVFKLHVLCE-RGGPRLTVKTNELKWLPNGSELPLETKPDSNPSSKPRTYTSFSSSQ 219
KN + CE +L + EL + N + + + SS+ S
Sbjct: 71 KN---LNYSMDCECNSYCQLCSRVFELNIIANENLKHVFSTHLLEVSSQKY-------SL 120
Query: 220 DLLPEFSNNPIRPM---LDITIARLGPGQEIELEAHAVKGIGKTHAKWSPVATAWYR 273
+ P N ++ + +I I +L GQ I+L A KG GK HAKW+PV+ ++
Sbjct: 121 ERKPNLLNQHLKKINFDSEIIITKLTKGQSIKLICVAKKGTGKMHAKWNPVSNIRFK 177
>gi|268324993|emb|CBH38581.1| putative DNA-directed RNA polymerase, subunit D [uncultured
archaeon]
Length = 213
Score = 67.8 bits (164), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 57/205 (27%), Positives = 91/205 (44%), Gaps = 42/205 (20%)
Query: 92 LIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRLGLIPIIVDPRLFEY 151
L G+ ANA RR++IAE+P +AI+++ I NTS++ DE LA RL L+P+ D + ++
Sbjct: 17 LSGVKVRFANALRRVMIAEVPKLAIDELNIRENTSLLYDEQLALRLALVPLKTDLKDYK- 75
Query: 152 MSENDTSNEKNTIVFKLHVLCERGGPRLTVKTNELKWLPNGSELPLETKPDSNPSSKPRT 211
E++ I L V + EL + + P +S+
Sbjct: 76 --------EEDQITLTLKATSPEKAGHTMVYSKEL----------ISSYPKVEAASENIP 117
Query: 212 YTSFSSSQDLLPEFSNNPIRPMLDITIARLGPGQEIELEAHAVKGIGKTHAKWSPVATAW 271
S++ + T+AR Q+I+L+A A G G+ HAKW PV
Sbjct: 118 IVKLISTEREIGAIK----------TVAR----QKIDLDAIARWGRGEEHAKWQPVTICG 163
Query: 272 YRMLPEIVLLEDVEDEDAEKLVKTC 296
Y+ ++ DED L+ T
Sbjct: 164 YK---------NISDEDVNNLLFTV 179
>gi|448739234|ref|ZP_21721249.1| DNA-directed RNA polymerase subunit D [Halococcus thailandensis JCM
13552]
gi|445799829|gb|EMA50198.1| DNA-directed RNA polymerase subunit D [Halococcus thailandensis JCM
13552]
Length = 248
Score = 67.8 bits (164), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 58/215 (26%), Positives = 90/215 (41%), Gaps = 50/215 (23%)
Query: 72 FCNNFRVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDE 131
+ VE + + F + GI A AN RR +IA++PT++I+ V + N+SV+ DE
Sbjct: 1 MSTEYDVEFVDRDERAARFLVRGITPAFANGIRRAMIADVPTLSIDTVRVVENSSVMFDE 60
Query: 132 VLAHRLGLIPIIVDPRLFEYMSENDTSNEKNTIVFKLHVLCERGGPRLTVKTNELKWLPN 191
+ HRLG++P+ P FE M E ++ L V
Sbjct: 61 QIGHRLGMVPLAAPPDEFE-MGE--------SVTLGLDV--------------------- 90
Query: 192 GSELPLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPMLDITIARLGPGQEIELEA 251
+ PD+ S ++ S + P N PI + D Q +E+EA
Sbjct: 91 -------SGPDTAYSGDLQSMDSM-----VEPAEQNVPIIELKD--------DQRLEIEA 130
Query: 252 HAVKGIGKTHAKWSPVATAWYRMLPEIVLLEDVED 286
AV GK+HAK YR L + ++ D E+
Sbjct: 131 DAVLDTGKSHAKHQGGVAVGYRHLQTVDVVGDREE 165
>gi|448727623|ref|ZP_21709972.1| DNA-directed RNA polymerase subunit D [Halococcus morrhuae DSM
1307]
gi|445789609|gb|EMA40288.1| DNA-directed RNA polymerase subunit D [Halococcus morrhuae DSM
1307]
Length = 248
Score = 67.4 bits (163), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 57/215 (26%), Positives = 90/215 (41%), Gaps = 50/215 (23%)
Query: 72 FCNNFRVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDE 131
+ VE + + F + GI A AN RR ++A++PT++I+ V + N+SV+ DE
Sbjct: 1 MSTEYDVEFVDHDERAARFLVRGITPAFANGIRRAMVADVPTLSIDTVRVVENSSVMFDE 60
Query: 132 VLAHRLGLIPIIVDPRLFEYMSENDTSNEKNTIVFKLHVLCERGGPRLTVKTNELKWLPN 191
+ HRLG++P+ P FE M E ++ L V
Sbjct: 61 QIGHRLGMVPLATPPDEFE-MGE--------SVTLGLDV--------------------- 90
Query: 192 GSELPLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPMLDITIARLGPGQEIELEA 251
+ PD+ S ++ S + P N PI + D Q +E+EA
Sbjct: 91 -------SGPDTAYSGDLQSMDSM-----VEPAEQNVPIIELKD--------DQRLEVEA 130
Query: 252 HAVKGIGKTHAKWSPVATAWYRMLPEIVLLEDVED 286
AV GK+HAK YR L + ++ D E+
Sbjct: 131 DAVLDTGKSHAKHQGAVAVGYRHLQTVDVVGDREE 165
>gi|448361735|ref|ZP_21550348.1| DNA-directed RNA polymerase subunit D [Natrialba asiatica DSM
12278]
gi|445649415|gb|ELZ02352.1| DNA-directed RNA polymerase subunit D [Natrialba asiatica DSM
12278]
Length = 249
Score = 67.4 bits (163), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 66/219 (30%), Positives = 92/219 (42%), Gaps = 50/219 (22%)
Query: 76 FRVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAH 135
+ VE + D F + GI A AN RR ++A++PTMAI+ V N+SV+ DE LA
Sbjct: 5 YDVEFVEREDRDARFLVRGITPAFANGIRRAMLADVPTMAIDTVRFVENSSVMFDEQLAL 64
Query: 136 RLGLIPIIVDPRLFEYMSENDTSNEKNTIVFKLHVLCERGGPRLTVKTNELKWLPNGSEL 195
RLGL+P+ P E+ E +T+ + V GP T + +L
Sbjct: 65 RLGLVPLTTPPE-GEF-------GEDDTVTLSIDV----EGP-ATAYSGDL--------- 102
Query: 196 PLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPMLDITIARLGPGQEIELEAHAVK 255
SS + + P N PI + D Q +E EA AV
Sbjct: 103 -------------------ISSDELVQPADENVPIIDLKD--------DQRLEAEADAVL 135
Query: 256 GIGKTHAKWSPVATAWYRMLPEIVLLEDV-EDEDAEKLV 293
GK HAK YR L + +ED+ E ED E +
Sbjct: 136 DRGKDHAKHQGGVAVGYRHLQRVAAVEDLPEFEDPESRI 174
>gi|448611952|ref|ZP_21662382.1| DNA-directed RNA polymerase subunit D [Haloferax mucosum ATCC
BAA-1512]
gi|445742713|gb|ELZ94207.1| DNA-directed RNA polymerase subunit D [Haloferax mucosum ATCC
BAA-1512]
Length = 260
Score = 67.4 bits (163), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 61/219 (27%), Positives = 91/219 (41%), Gaps = 50/219 (22%)
Query: 73 CNNFRVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEV 132
N+F VE I F + G+ A+AN RR ++A++PT +I+ V NTSV+ DE+
Sbjct: 2 ANDFEVEFIEREDRRARFVVHGLTPALANGIRRAMVADVPTFSIDTVRFVENTSVMFDEM 61
Query: 133 LAHRLGLIPIIVDPRLFEYMSENDTSNEKNTIVFKLHVLCERGGPRLTVKTNELKWLPNG 192
+ RLGL+P+ FE DT + V E GP T + +++
Sbjct: 62 IGLRLGLVPLTTPLDDFE---PGDT----------VTVALEVDGP-ATAYSGDIE----- 102
Query: 193 SELPLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPMLDITIARLGPGQEIELEAH 252
S+ ++P N P I L GQ +E EA
Sbjct: 103 -----------------------SADDMIVPADENIP--------IIELKEGQRLEFEAD 131
Query: 253 AVKGIGKTHAKWSPVATAWYRMLPEIVLLEDVEDEDAEK 291
AV G GK HAK YR L + ++ D + D ++
Sbjct: 132 AVLGYGKDHAKNQGGVAVGYRHLQRVEVVGDAGEFDEQE 170
>gi|448298705|ref|ZP_21488732.1| DNA-directed RNA polymerase subunit D [Natronorubrum tibetense
GA33]
gi|445591007|gb|ELY45218.1| DNA-directed RNA polymerase subunit D [Natronorubrum tibetense
GA33]
Length = 249
Score = 67.4 bits (163), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 60/209 (28%), Positives = 89/209 (42%), Gaps = 49/209 (23%)
Query: 76 FRVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAH 135
+ VE + D F + + A AN RR ++A++PTMAI+ V N+SV+ DE LA
Sbjct: 5 YDVEFVEREDRDARFLVRDVTPAFANGIRRAMVADVPTMAIDTVRFVENSSVMFDEQLAL 64
Query: 136 RLGLIPIIVDPRLFEYMSENDTSNEKNTIVFKLHVLCERGGPRLTVKTNELKWLPNGSEL 195
RLGL+P+ P E++ E +T+ + V GP T + +L
Sbjct: 65 RLGLVPLTTPPE-GEFV-------EDDTVTLSIDV----EGP-ATAYSGDL--------- 102
Query: 196 PLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPMLDITIARLGPGQEIELEAHAVK 255
SS DL+ +N + I L GQ +E EA AV
Sbjct: 103 --------------------VSSDDLVQPADDN-------VPIIELKDGQRLEAEADAVL 135
Query: 256 GIGKTHAKWSPVATAWYRMLPEIVLLEDV 284
GK HAK YR L + +++D+
Sbjct: 136 ERGKNHAKHQGGVAVGYRHLQRVSVVDDL 164
>gi|448630480|ref|ZP_21673135.1| DNA-directed RNA polymerase subunit D [Haloarcula vallismortis ATCC
29715]
gi|445756403|gb|EMA07778.1| DNA-directed RNA polymerase subunit D [Haloarcula vallismortis ATCC
29715]
Length = 259
Score = 67.4 bits (163), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 59/220 (26%), Positives = 96/220 (43%), Gaps = 53/220 (24%)
Query: 72 FCNNFRVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDE 131
++ VE + + + + GI A AN RR ++A++PT +I+ V + NTSV+ +E
Sbjct: 1 MTQDYEVEFVERGEREARILVRGITPAFANGIRRAMVADVPTFSIDTVRVIENTSVMFNE 60
Query: 132 VLAHRLGLIPIIVDPRLFEYMSENDTSNEKNTIVFKLHVLCERGGPRLTVKTNELKWLPN 191
+ RLGL+P+ D FE
Sbjct: 61 QIGLRLGLVPLTTDLDDFEI---------------------------------------- 80
Query: 192 GSELPLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPMLDITIARLGPGQEIELEA 251
G E+ L D P++ Y+S S D + E +++ I P++D L GQ +E+EA
Sbjct: 81 GDEVTLSLSVDG-PAT---AYSSDLVSSDPMVEAADDNI-PIID-----LKEGQRLEVEA 130
Query: 252 HAVKGIGKTHAKWSPVATAWYRMLPEIVLLEDV---EDED 288
AV G+ HAK YR L ++ ++ D+ ED+D
Sbjct: 131 DAVLDTGREHAKHQGGVAVGYRHLQQVEVVGDLGEFEDDD 170
>gi|448689118|ref|ZP_21694855.1| DNA-directed RNA polymerase subunit D [Haloarcula japonica DSM
6131]
gi|445778988|gb|EMA29930.1| DNA-directed RNA polymerase subunit D [Haloarcula japonica DSM
6131]
Length = 259
Score = 67.4 bits (163), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 59/220 (26%), Positives = 96/220 (43%), Gaps = 53/220 (24%)
Query: 72 FCNNFRVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDE 131
++ VE + + + + GI A AN RR ++A++PT +I+ V + NTSV+ +E
Sbjct: 1 MTQDYEVEFVERGEREARILVRGITPAFANGIRRAMVADVPTFSIDTVRVIENTSVMFNE 60
Query: 132 VLAHRLGLIPIIVDPRLFEYMSENDTSNEKNTIVFKLHVLCERGGPRLTVKTNELKWLPN 191
+ RLGL+P+ D FE
Sbjct: 61 QIGLRLGLVPLTTDLDDFEI---------------------------------------- 80
Query: 192 GSELPLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPMLDITIARLGPGQEIELEA 251
G E+ L D P++ Y+S S D + E +++ I P++D L GQ +E+EA
Sbjct: 81 GDEVTLSLSVDG-PAT---AYSSDLVSSDPMVEAADDNI-PIID-----LKEGQRLEVEA 130
Query: 252 HAVKGIGKTHAKWSPVATAWYRMLPEIVLLEDV---EDED 288
AV G+ HAK YR L ++ ++ D+ ED+D
Sbjct: 131 DAVLDTGREHAKHQGGVAVGYRHLQQVEVVGDLGEFEDDD 170
>gi|399576713|ref|ZP_10770468.1| DNA-directed RNA polymerase, subunit d [Halogranum salarium B-1]
gi|399238157|gb|EJN59086.1| DNA-directed RNA polymerase, subunit d [Halogranum salarium B-1]
Length = 249
Score = 67.4 bits (163), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 58/211 (27%), Positives = 85/211 (40%), Gaps = 50/211 (23%)
Query: 73 CNNFRVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEV 132
++F VE I F + G+ AIAN RR +IA++PT++I+ V N+SV+ DE+
Sbjct: 2 AHDFDVEFIERGDRKARFLVRGLTPAIANGIRRAMIADVPTLSIDSVRFVENSSVMFDEM 61
Query: 133 LAHRLGLIPIIVDPRLFEYMSENDTSNEKNTIVFKLHVLCERGGPRLTVKTNELKWLPNG 192
+A RLGL+P+ T L G
Sbjct: 62 IALRLGLVPL----------------------------------------TTSLDDFEEG 81
Query: 193 SELPLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPMLDITIARLGPGQEIELEAH 252
E+ L D + + SS + + P N P I L GQ +E EA
Sbjct: 82 DEVTLAL--DVEGPATAYSGDMVSSVEYVQPADENIP--------IIELKEGQHLEFEAD 131
Query: 253 AVKGIGKTHAKWSPVATAWYRMLPEIVLLED 283
AV GK+HAK YR L ++ ++ D
Sbjct: 132 AVLDSGKSHAKHQGGVAVGYRHLQKVEVVGD 162
>gi|302908578|ref|XP_003049900.1| predicted protein [Nectria haematococca mpVI 77-13-4]
gi|256730836|gb|EEU44187.1| predicted protein [Nectria haematococca mpVI 77-13-4]
Length = 335
Score = 67.4 bits (163), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 58/205 (28%), Positives = 91/205 (44%), Gaps = 35/205 (17%)
Query: 77 RVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHR 136
+V++ ++F+L + A ANA RR++ AE+PT+AI+ V I N+SV+ DE +AHR
Sbjct: 16 QVKISAADHTHVDFELSKTNLAFANALRRVIQAEVPTIAIDLVEIEINSSVLADEFIAHR 75
Query: 137 LGLIPIIVDPRLFEYMSENDTSN-----EKNTIVFKLHVLCERGGPRLTVKTNELKWLPN 191
LGLIP+ D + ++ + + E+ ++ LH C +K + +
Sbjct: 76 LGLIPL--DSKGVGELNNSRDCDCEQYCEQCSVTLNLHAKCTS---DEIMKVYARDLVVD 130
Query: 192 GSELPLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPMLDITIARLGPGQEIELEA 251
G R S S PE IA+L QE+++
Sbjct: 131 G-----------------RHANSVGSPVITDPE--------GYGCLIAKLRKDQELKITC 165
Query: 252 HAVKGIGKTHAKWSPVATAWYRMLP 276
A KGI K HAKW P + + P
Sbjct: 166 IAKKGIAKEHAKWMPTSAVGFEYDP 190
>gi|448348754|ref|ZP_21537602.1| DNA-directed RNA polymerase subunit D [Natrialba taiwanensis DSM
12281]
gi|445642415|gb|ELY95483.1| DNA-directed RNA polymerase subunit D [Natrialba taiwanensis DSM
12281]
Length = 249
Score = 67.0 bits (162), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 66/219 (30%), Positives = 92/219 (42%), Gaps = 50/219 (22%)
Query: 76 FRVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAH 135
+ VE + D F + GI A AN RR ++A++PTMAI+ V N+SV+ DE LA
Sbjct: 5 YDVEFVEREDRDARFLVRGITPAFANGIRRAMLADVPTMAIDTVRFVENSSVMFDEQLAL 64
Query: 136 RLGLIPIIVDPRLFEYMSENDTSNEKNTIVFKLHVLCERGGPRLTVKTNELKWLPNGSEL 195
RLGL+P+ P E+ E +T+ + V GP T + +L
Sbjct: 65 RLGLVPLSTPPE-GEF-------GEDDTVTLSIDV----EGP-ATAYSGDL--------- 102
Query: 196 PLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPMLDITIARLGPGQEIELEAHAVK 255
SS + + P N PI + D Q +E EA AV
Sbjct: 103 -------------------ISSDELVQPADENVPIIDLKD--------DQRLEAEADAVL 135
Query: 256 GIGKTHAKWSPVATAWYRMLPEIVLLEDV-EDEDAEKLV 293
GK HAK YR L + +ED+ E ED E +
Sbjct: 136 DRGKDHAKHQGGVAVGYRHLQRVAAVEDLPEFEDPESRI 174
>gi|48478294|ref|YP_024000.1| DNA-directed RNA polymerase subunit D [Picrophilus torridus DSM
9790]
gi|55976419|sp|Q6KZP5.1|RPOD_PICTO RecName: Full=DNA-directed RNA polymerase subunit D
gi|48430942|gb|AAT43807.1| DNA-directed RNA polymerase subunit D [Picrophilus torridus DSM
9790]
Length = 271
Score = 67.0 bits (162), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 55/208 (26%), Positives = 87/208 (41%), Gaps = 50/208 (24%)
Query: 78 VEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVL------------IANNT 125
+++I L + ++F + GI AIAN+ RR LI ++P +AIE V+ + +++
Sbjct: 2 LDIIELKDNYIKFSISGITPAIANSIRRTLINDIPKLAIENVVFHHGEIRDSEGNVYDSS 61
Query: 126 SVIQDEVLAHRLGLIPIIVDPRLFEYMSENDTSNEKNTIVFKLHVLCERGGPRLTVKTNE 185
+ DEV+A RLGLIP+ D ++ F+ C G L
Sbjct: 62 LPLFDEVVALRLGLIPLKTDLKM----------------NFRDQCSCNGEGCDLCTVKYS 105
Query: 186 LKWLPNGSELPLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPMLDITIARLGPGQ 245
+ L + P +NP K P+ PM I I +L GQ
Sbjct: 106 INKLGPADVFSSDLIPINNPDLK--------------------PVDPM--IPIVKLKKGQ 143
Query: 246 EIELEAHAVKGIGKTHAKWSPVATAWYR 273
+ + A+ G GK HAKW + Y+
Sbjct: 144 AMLVTCEAIMGRGKDHAKWQVTSGVSYK 171
>gi|448565309|ref|ZP_21636176.1| DNA-directed RNA polymerase subunit D [Haloferax prahovense DSM
18310]
gi|445715053|gb|ELZ66809.1| DNA-directed RNA polymerase subunit D [Haloferax prahovense DSM
18310]
Length = 259
Score = 67.0 bits (162), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 60/219 (27%), Positives = 91/219 (41%), Gaps = 50/219 (22%)
Query: 73 CNNFRVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEV 132
N+F+VE I F G+ A+AN RR ++A++PT +I+ V NTSV+ DE+
Sbjct: 2 VNDFQVEFIEREDRRARFVARGLTPALANGIRRAMVADVPTFSIDTVRFVENTSVMFDEM 61
Query: 133 LAHRLGLIPIIVDPRLFEYMSENDTSNEKNTIVFKLHVLCERGGPRLTVKTNELKWLPNG 192
+ RLGL+P+ FE +T+ L V GP T + +++
Sbjct: 62 IGLRLGLVPLTTPLGDFE---------PGDTVTVALEV----DGP-ATAYSGDIE----- 102
Query: 193 SELPLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPMLDITIARLGPGQEIELEAH 252
S+ ++P N P I L GQ +E EA
Sbjct: 103 -----------------------SADDMVVPADENIP--------IIELKEGQRLEFEAD 131
Query: 253 AVKGIGKTHAKWSPVATAWYRMLPEIVLLEDVEDEDAEK 291
AV G GK HAK YR L + ++ D + D ++
Sbjct: 132 AVLGYGKDHAKNQGGVAVGYRHLQRVEVVGDAGEFDEQE 170
>gi|433418975|ref|ZP_20405134.1| DNA-directed RNA polymerase subunit D [Haloferax sp. BAB2207]
gi|448546358|ref|ZP_21626522.1| DNA-directed RNA polymerase subunit D [Haloferax sp. ATCC BAA-646]
gi|448548345|ref|ZP_21627612.1| DNA-directed RNA polymerase subunit D [Haloferax sp. ATCC BAA-645]
gi|448557539|ref|ZP_21632728.1| DNA-directed RNA polymerase subunit D [Haloferax sp. ATCC BAA-644]
gi|448568220|ref|ZP_21637797.1| DNA-directed RNA polymerase subunit D [Haloferax lucentense DSM
14919]
gi|448600839|ref|ZP_21656218.1| DNA-directed RNA polymerase subunit D [Haloferax alexandrinus JCM
10717]
gi|448602318|ref|ZP_21656374.1| DNA-directed RNA polymerase subunit D [Haloferax sulfurifontis ATCC
BAA-897]
gi|448622863|ref|ZP_21669512.1| DNA-directed RNA polymerase subunit D [Haloferax denitrificans ATCC
35960]
gi|432199583|gb|ELK55744.1| DNA-directed RNA polymerase subunit D [Haloferax sp. BAB2207]
gi|445702811|gb|ELZ54751.1| DNA-directed RNA polymerase subunit D [Haloferax sp. ATCC BAA-646]
gi|445714096|gb|ELZ65863.1| DNA-directed RNA polymerase subunit D [Haloferax sp. ATCC BAA-644]
gi|445714440|gb|ELZ66202.1| DNA-directed RNA polymerase subunit D [Haloferax sp. ATCC BAA-645]
gi|445727170|gb|ELZ78784.1| DNA-directed RNA polymerase subunit D [Haloferax lucentense DSM
14919]
gi|445734852|gb|ELZ86408.1| DNA-directed RNA polymerase subunit D [Haloferax alexandrinus JCM
10717]
gi|445747833|gb|ELZ99287.1| DNA-directed RNA polymerase subunit D [Haloferax sulfurifontis ATCC
BAA-897]
gi|445753371|gb|EMA04788.1| DNA-directed RNA polymerase subunit D [Haloferax denitrificans ATCC
35960]
Length = 259
Score = 67.0 bits (162), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 60/219 (27%), Positives = 91/219 (41%), Gaps = 50/219 (22%)
Query: 73 CNNFRVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEV 132
N+F+VE I F G+ A+AN RR ++A++PT +I+ V NTSV+ DE+
Sbjct: 2 VNDFQVEFIEREDRRARFVARGLTPALANGIRRAMVADVPTFSIDTVRFVENTSVMFDEM 61
Query: 133 LAHRLGLIPIIVDPRLFEYMSENDTSNEKNTIVFKLHVLCERGGPRLTVKTNELKWLPNG 192
+ RLGL+P+ FE +T+ L V GP T + +++
Sbjct: 62 IGLRLGLVPLTTPLDDFE---------PGDTVTVALEV----DGP-ATAYSGDIE----- 102
Query: 193 SELPLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPMLDITIARLGPGQEIELEAH 252
S+ ++P N P I L GQ +E EA
Sbjct: 103 -----------------------SADDMVVPADENIP--------IIELKEGQRLEFEAD 131
Query: 253 AVKGIGKTHAKWSPVATAWYRMLPEIVLLEDVEDEDAEK 291
AV G GK HAK YR L + ++ D + D ++
Sbjct: 132 AVLGYGKDHAKNQGGVAVGYRHLQRVEVVGDAGEFDEQE 170
>gi|322701809|gb|EFY93557.1| RNA polymerase II subunit 3 [Metarhizium acridum CQMa 102]
Length = 362
Score = 66.6 bits (161), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 60/204 (29%), Positives = 89/204 (43%), Gaps = 31/204 (15%)
Query: 76 FRVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAH 135
+R E ++F L + + AN+ RRI+ AE+PT+AI+ V + NTSV+ DE +AH
Sbjct: 26 WRPEFKAADSTRVDFALSRTNLSFANSIRRIIQAEVPTIAIDLVEVEVNTSVLADEFIAH 85
Query: 136 RLGLIPIIVDP-RLFEYMSENDTSN--EKNTIVFKLHVLCERGGPRLTVKTNELKWLPNG 192
RLGLIP+ Y + D E+ ++ LH C +K + +G
Sbjct: 86 RLGLIPLNAKGVNELNYSRDCDCEQYCEQCSVTLTLHARCTS---DEIMKVYARDLIVDG 142
Query: 193 SELPLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPMLDITIARLGPGQEIELEAH 252
+SQ P N+P + IA+L QE++L
Sbjct: 143 RH----------------------ASQVGTPVI-NDP--EGMGCLIAKLRKDQELKLTCI 177
Query: 253 AVKGIGKTHAKWSPVATAWYRMLP 276
A KGI K HAKW P + + P
Sbjct: 178 AKKGIAKEHAKWMPTSAVGFEYDP 201
>gi|255513546|gb|EET89812.1| RNA polymerase insert [Candidatus Micrarchaeum acidiphilum ARMAN-2]
Length = 191
Score = 66.6 bits (161), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 60/189 (31%), Positives = 85/189 (44%), Gaps = 51/189 (26%)
Query: 78 VEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRL 137
+EV+R EF L G A ANA RRI I + AI+KV + NTS + DE +AHR+
Sbjct: 3 IEVLRDDDKVFEFVLKGATANYANALRRIAINGIKAFAIDKVTVYENTSSMFDEYIAHRI 62
Query: 138 GLIPIIVDPRLFEYMSENDTSNEKNTIVFKLHVLCERGGPRLTVKTNELKWLPNGSELPL 197
GL+P+I P S++K+ I+F L E GP T+ + L+
Sbjct: 63 GLVPLIT-PH---------GSSDKDEILFTL----EAAGPG-TIYSKSLE---------- 97
Query: 198 ETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPMLDITIARLGPGQEIELEAHAVKGI 257
SS + ++ NP +I I +LG Q+I +E AV G
Sbjct: 98 ------------------SSDKSVV---VANP-----NIPIIKLGRDQKIRIEGKAVMGS 131
Query: 258 GKTHAKWSP 266
HAK+ P
Sbjct: 132 ALKHAKFQP 140
>gi|448306201|ref|ZP_21496110.1| DNA-directed RNA polymerase subunit D [Natronorubrum bangense JCM
10635]
gi|445598615|gb|ELY52670.1| DNA-directed RNA polymerase subunit D [Natronorubrum bangense JCM
10635]
Length = 249
Score = 66.6 bits (161), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 60/212 (28%), Positives = 89/212 (41%), Gaps = 49/212 (23%)
Query: 73 CNNFRVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEV 132
++ VE + F + G+ A AN RR ++A++PT+AI+ V N+SV+ DE
Sbjct: 2 TEDYDVEFVEHEDRYARFLVRGVTPAFANGLRRAMLADVPTLAIDTVRFIENSSVMFDEQ 61
Query: 133 LAHRLGLIPIIVDPRLFEYMSENDTSNEKNTIVFKLHVLCERGGPRLTVKTNELKWLPNG 192
LA RLGL+P+ P E+ E +T+ + V GP T + +L
Sbjct: 62 LALRLGLVPLTTPPEA-EFA-------EDDTVTLSIDV----EGP-ATAYSGDL------ 102
Query: 193 SELPLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPMLDITIARLGPGQEIELEAH 252
SS DL+ N I I L Q +E EA
Sbjct: 103 -----------------------VSSDDLVQPADEN-------IPIIDLKDNQRLEAEAD 132
Query: 253 AVKGIGKTHAKWSPVATAWYRMLPEIVLLEDV 284
AV GK HAK +A YR L + +++D+
Sbjct: 133 AVFNRGKNHAKHQGAVSAGYRHLQRVTVVDDL 164
>gi|257388632|ref|YP_003178405.1| RNA polymerase insert [Halomicrobium mukohataei DSM 12286]
gi|257170939|gb|ACV48698.1| RNA polymerase insert [Halomicrobium mukohataei DSM 12286]
Length = 259
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 59/213 (27%), Positives = 89/213 (41%), Gaps = 52/213 (24%)
Query: 72 FCNNFRVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDE 131
++ VE + + + F + GI A AN RR +IA++PT +++ V + N+SV+ DE
Sbjct: 1 MTQDYEVEFVERSDREARFLVRGISPAFANGIRRAMIADVPTFSVDTVRVIENSSVMFDE 60
Query: 132 VLAHRLGLIPIIVDPRLFEYMSENDTSNEKNTIVFKLHVLCERGGPRLTVKTNELKWLPN 191
+ RLGL+P+ D FE
Sbjct: 61 QIGLRLGLVPLTTDLDDFEV---------------------------------------- 80
Query: 192 GSELPLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPMLD-ITIARLGPGQEIELE 250
G E+ L S S P T + S DL+ S++ + P D I I L GQ +E+E
Sbjct: 81 GDEVTL-----SIDVSGPET----AYSGDLVS--SDSLVGPADDNIPIIDLKDGQRLEVE 129
Query: 251 AHAVKGIGKTHAKWSPVATAWYRMLPEIVLLED 283
A AV G+ HAK YR L + ++ D
Sbjct: 130 ADAVLDRGREHAKHQGGVAVGYRHLQRVEVVGD 162
>gi|345004807|ref|YP_004807660.1| DNA-directed RNA polymerase [halophilic archaeon DL31]
gi|344320433|gb|AEN05287.1| DNA-directed RNA polymerase [halophilic archaeon DL31]
Length = 253
Score = 65.9 bits (159), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 64/223 (28%), Positives = 97/223 (43%), Gaps = 52/223 (23%)
Query: 72 FCNNFRVEVIRLTKDDMEFDLI---GIDAAIANAFRRILIAELPTMAIEKVLIANNTSVI 128
+ F VE IR DD L+ G+ A AN RR ++A++PT++I+ V + N+SV+
Sbjct: 1 MSDEFDVEFIR---DDDRNTLVLVRGLTPAFANGLRRAMVADVPTLSIDTVRMVQNSSVM 57
Query: 129 QDEVLAHRLGLIPIIVDPRLFEYMSENDTSNEKNTIVFKLHVLCERGGPRLTVKTNELKW 188
DE++ RLGL+P+ P FE +T+ L V GP T + +++
Sbjct: 58 FDEMIGLRLGLVPLTT-PDDFEI---------GDTVTLALDVE----GP-ATAYSGDIE- 101
Query: 189 LPNGSELPLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPMLDITIARLGPGQEIE 248
SS D+ P N PI +++ G Q IE
Sbjct: 102 ---------------------------SSDPDVQPADENIPI---IELKENPSGENQRIE 131
Query: 249 LEAHAVKGIGKTHAKWSPVATAWYRMLPEIVLLEDVEDEDAEK 291
LEA AV G H K S YR L ++ ++ D + D E+
Sbjct: 132 LEAEAVLERGSDHVKQSGGVAVGYRHLQQVSVVGDTGEFDDEE 174
>gi|292656898|ref|YP_003536795.1| DNA-directed RNA polymerase subunit D [Haloferax volcanii DS2]
gi|448290898|ref|ZP_21482043.1| DNA-directed RNA polymerase subunit D [Haloferax volcanii DS2]
gi|291371468|gb|ADE03695.1| DNA-directed RNA polymerase subunit D [Haloferax volcanii DS2]
gi|445577951|gb|ELY32371.1| DNA-directed RNA polymerase subunit D [Haloferax volcanii DS2]
Length = 259
Score = 65.9 bits (159), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 60/219 (27%), Positives = 91/219 (41%), Gaps = 50/219 (22%)
Query: 73 CNNFRVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEV 132
N+F+VE I F G+ A+AN RR ++A++PT +I+ V NTSV+ DE+
Sbjct: 2 VNDFQVEFIEREDRRARFVARGLTPALANGIRRAMVADVPTFSIDTVRFVENTSVMFDEM 61
Query: 133 LAHRLGLIPIIVDPRLFEYMSENDTSNEKNTIVFKLHVLCERGGPRLTVKTNELKWLPNG 192
+ RLGL+P+ FE +T+ L V GP T + +++
Sbjct: 62 IGLRLGLVPLTTPLDDFE---------PGDTVTVALEV----DGP-ATAYSGDIE----- 102
Query: 193 SELPLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPMLDITIARLGPGQEIELEAH 252
S+ ++P N P I L GQ +E EA
Sbjct: 103 -----------------------SADDMVVPADENIP--------IIELKEGQRLEFEAD 131
Query: 253 AVKGIGKTHAKWSPVATAWYRMLPEIVLLEDVEDEDAEK 291
AV G GK HAK YR L + ++ D + D ++
Sbjct: 132 AVLGHGKDHAKNQGGVAVGYRHLQRVEVVGDAGEFDEQE 170
>gi|167044506|gb|ABZ09181.1| putative RNA polymerase Rpb3/RpoA insert domain protein [uncultured
marine crenarchaeote HF4000_APKG6J21]
Length = 200
Score = 65.9 bits (159), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 59/186 (31%), Positives = 78/186 (41%), Gaps = 50/186 (26%)
Query: 83 LTKDD--MEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRLGLI 140
LT DD + LIGI ANA RRI + +P AI+ V I N+SVI DE LA LG+I
Sbjct: 7 LTSDDKKISIKLIGISLHYANALRRICLNGVPIFAIDTVDIIENSSVIPDEGLALTLGMI 66
Query: 141 PIIVDPRLFEYMSENDTSNEKNTIVFKLHVLCERGGPRLTVKTNELKWLPNGSELPLETK 200
P+ + F D SN + +V
Sbjct: 67 PLKTELNGF------DESNSRVILVL---------------------------------- 86
Query: 201 PDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPML-DITIARLGPGQEIELEAHAVKGIGK 259
DS + + TS E + ++P+ I I L PGQ I+LEA+A G G
Sbjct: 87 -DSEAAETTKIVTSAE------LESKDQVVKPISKQIPIVHLAPGQRIKLEAYARLGRGT 139
Query: 260 THAKWS 265
HAKW+
Sbjct: 140 EHAKWN 145
>gi|167044152|gb|ABZ08834.1| putative RNA polymerase Rpb3/RpoA insert domain protein [uncultured
marine crenarchaeote HF4000_APKG5E24]
Length = 200
Score = 65.5 bits (158), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 59/186 (31%), Positives = 78/186 (41%), Gaps = 50/186 (26%)
Query: 83 LTKDD--MEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRLGLI 140
LT DD + LIGI ANA RRI + +P AI+ V I N+SVI DE LA LG+I
Sbjct: 7 LTSDDKKISIKLIGISLHYANALRRICLNGVPIFAIDTVDIIENSSVIPDEGLALTLGMI 66
Query: 141 PIIVDPRLFEYMSENDTSNEKNTIVFKLHVLCERGGPRLTVKTNELKWLPNGSELPLETK 200
P+ + F D SN + +V
Sbjct: 67 PLKTELNGF------DESNSRVILVL---------------------------------- 86
Query: 201 PDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPML-DITIARLGPGQEIELEAHAVKGIGK 259
DS + + TS E + ++P+ I I L PGQ I+LEA+A G G
Sbjct: 87 -DSEAAETTKIVTSAE------LESKDQVVKPISKQIPIVHLAPGQRIKLEAYARLGRGT 139
Query: 260 THAKWS 265
HAKW+
Sbjct: 140 EHAKWN 145
>gi|448322475|ref|ZP_21511945.1| DNA-directed RNA polymerase subunit D [Natronococcus amylolyticus
DSM 10524]
gi|445601233|gb|ELY55222.1| DNA-directed RNA polymerase subunit D [Natronococcus amylolyticus
DSM 10524]
Length = 249
Score = 65.5 bits (158), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 57/213 (26%), Positives = 88/213 (41%), Gaps = 49/213 (23%)
Query: 72 FCNNFRVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDE 131
+ VE + + F + GI A AN RR ++A++PTMAI+ V N+SV+ DE
Sbjct: 1 MSEEYDVEFVERGNREGRFLVRGITPAFANGIRRAMVADVPTMAIDTVRFVENSSVMFDE 60
Query: 132 VLAHRLGLIPIIVDPRLFEYMSENDTSNEKNTIVFKLHVLCERGGPRLTVKTNELKWLPN 191
LA RLGL+P+ P E++ E +T+ + V
Sbjct: 61 QLALRLGLVPLTTPPE-GEFV-------EDDTVTLSIDV--------------------- 91
Query: 192 GSELPLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPMLDITIARLGPGQEIELEA 251
P++ Y+ S D L E ++ ++ I L GQ +E EA
Sbjct: 92 -----------EGPAT---AYSGDLVSSDSLVEAADE------NVPIIELKEGQRLEAEA 131
Query: 252 HAVKGIGKTHAKWSPVATAWYRMLPEIVLLEDV 284
A GK HAK YR L + +++D+
Sbjct: 132 EARLERGKNHAKHQGGVAVGYRHLQRVEVVDDL 164
>gi|448578450|ref|ZP_21643885.1| DNA-directed RNA polymerase subunit D [Haloferax larsenii JCM
13917]
gi|448592478|ref|ZP_21651585.1| DNA-directed RNA polymerase subunit D [Haloferax elongans ATCC
BAA-1513]
gi|445726991|gb|ELZ78607.1| DNA-directed RNA polymerase subunit D [Haloferax larsenii JCM
13917]
gi|445731483|gb|ELZ83067.1| DNA-directed RNA polymerase subunit D [Haloferax elongans ATCC
BAA-1513]
Length = 260
Score = 65.5 bits (158), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 59/219 (26%), Positives = 89/219 (40%), Gaps = 50/219 (22%)
Query: 73 CNNFRVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEV 132
++F VE I F G+ A+AN RR +IA++PT +IE V NTSV+ DE+
Sbjct: 2 ADDFEVEFIEREDRRARFVARGLTPALANGIRRAMIADVPTFSIETVRFVENTSVMFDEM 61
Query: 133 LAHRLGLIPIIVDPRLFEYMSENDTSNEKNTIVFKLHVLCERGGPRLTVKTNELKWLPNG 192
+ RLGL+P+ FE + V E GP T + +++
Sbjct: 62 IGLRLGLVPLTTPLDEFEPGD-------------SVTVALEVDGP-ATAYSGDIE----- 102
Query: 193 SELPLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPMLDITIARLGPGQEIELEAH 252
S+ ++P N P I L GQ +E EA
Sbjct: 103 -----------------------SADDMVVPADENVP--------IIELKEGQRLEFEAD 131
Query: 253 AVKGIGKTHAKWSPVATAWYRMLPEIVLLEDVEDEDAEK 291
AV G GK HA+ + YR L + ++ D + D ++
Sbjct: 132 AVLGYGKDHARNQGGVSVGYRHLQRVEVVGDAGEFDEQE 170
>gi|448314284|ref|ZP_21503984.1| DNA-directed RNA polymerase subunit D [Natronolimnobius
innermongolicus JCM 12255]
gi|445595544|gb|ELY49650.1| DNA-directed RNA polymerase subunit D [Natronolimnobius
innermongolicus JCM 12255]
Length = 249
Score = 65.1 bits (157), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 58/209 (27%), Positives = 85/209 (40%), Gaps = 49/209 (23%)
Query: 76 FRVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAH 135
+ VE + + F + G+ AN RR ++A++PTMAI+ V N+SV+ DE LA
Sbjct: 5 YDVEFVERGDREARFLVRGVTPGFANGIRRAMVADVPTMAIDTVRFVENSSVMFDEQLAL 64
Query: 136 RLGLIPIIVDPRLFEYMSENDTSNEKNTIVFKLHVLCERGGPRLTVKTNELKWLPNGSEL 195
RLGL+P+ P E T+ + V GP T + +L
Sbjct: 65 RLGLVPLTTPP--------EGEFGEDETVTLSIDV----EGP-ATAYSGDL--------- 102
Query: 196 PLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPMLDITIARLGPGQEIELEAHAVK 255
SS + + P N PI + D GQ +E EA AV
Sbjct: 103 -------------------VSSDELVQPADENVPIIELKD--------GQRLEAEADAVV 135
Query: 256 GIGKTHAKWSPVATAWYRMLPEIVLLEDV 284
GK HAK YR L + +++D+
Sbjct: 136 DRGKDHAKHQGGVAVGYRHLQRVEVVDDL 164
>gi|167044977|gb|ABZ09642.1| putative RNA polymerase Rpb3/RpoA insert domain protein [uncultured
marine crenarchaeote HF4000_APKG8G2]
Length = 214
Score = 65.1 bits (157), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 57/186 (30%), Positives = 78/186 (41%), Gaps = 50/186 (26%)
Query: 83 LTKDD--MEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRLGLI 140
LT DD + L GI ANA RRI + +P AI+ V + N+SVI DE +AH LG+I
Sbjct: 22 LTSDDKKISIKLKGISLHYANALRRICLNGVPIFAIDTVDVIENSSVIPDEGIAHTLGMI 81
Query: 141 PIIVDPRLFEYMSENDTSNEKNTIVFKLHVLCERGGPRLTVKTNELKWLPNGSELPLETK 200
P+ + F D SN + +V
Sbjct: 82 PLKTELNGF------DESNSRVILVL---------------------------------- 101
Query: 201 PDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPML-DITIARLGPGQEIELEAHAVKGIGK 259
DS + + TS E + ++P+ I I L PGQ I+LEA+A G G
Sbjct: 102 -DSEAAENTKIVTSAE------LESKDQVVKPISKQIPIVHLAPGQRIKLEAYARLGRGT 154
Query: 260 THAKWS 265
HAKW+
Sbjct: 155 EHAKWN 160
>gi|385804352|ref|YP_005840752.1| DNA-directed RNA polymerase subunit D [Haloquadratum walsbyi C23]
gi|339729844|emb|CCC41127.1| DNA-directed RNA polymerase subunit D [Haloquadratum walsbyi C23]
Length = 262
Score = 65.1 bits (157), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 60/222 (27%), Positives = 91/222 (40%), Gaps = 55/222 (24%)
Query: 72 FCNNFRVEVIRLTKDD--MEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQ 129
++F +E I DD F + G+ A+AN RR ++A++PT +IE V N+SV+
Sbjct: 1 MTDDFDIEFIERDTDDRSARFLVRGVTPAVANGIRRAMVADIPTFSIEDVRFVENSSVMF 60
Query: 130 DEVLAHRLGLIPIIVDPRLFEYMSENDTSNEKNTIVFKLHVLCERGGPRLTVKTNELKWL 189
DE++ RLGL+P+ F+ +T+ L + GP+
Sbjct: 61 DEMIGLRLGLVPLTTPVDDFDI---------GDTVTLSLDIT----GPQT---------- 97
Query: 190 PNGSELPLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPMLDITIARLGPGQEIEL 249
Y+ S D L E ++ +I I L +EL
Sbjct: 98 ---------------------AYSGDIVSSDRLVEPADE------NIPIIELKENHRLEL 130
Query: 250 EAHAVKGIGKTHAKWSPVATAWYRMLPEIVLLEDVE---DED 288
EA AV GK+HAK YR L I ++ D + DED
Sbjct: 131 EADAVLDTGKSHAKQQGGVAVGYRHLQRIEVIGDADEFADED 172
>gi|110668834|ref|YP_658645.1| DNA-directed RNA polymerase subunit D [Haloquadratum walsbyi DSM
16790]
gi|109626581|emb|CAJ53045.1| DNA-directed RNA polymerase subunit D [Haloquadratum walsbyi DSM
16790]
Length = 262
Score = 65.1 bits (157), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 60/222 (27%), Positives = 91/222 (40%), Gaps = 55/222 (24%)
Query: 72 FCNNFRVEVIRLTKDD--MEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQ 129
++F +E I DD F + G+ A+AN RR ++A++PT +IE V N+SV+
Sbjct: 1 MTDDFDIEFIERDTDDRSARFLVRGVTPAVANGIRRAMVADIPTFSIEDVRFVENSSVMF 60
Query: 130 DEVLAHRLGLIPIIVDPRLFEYMSENDTSNEKNTIVFKLHVLCERGGPRLTVKTNELKWL 189
DE++ RLGL+P+ F+ +T+ L + GP+
Sbjct: 61 DEMIGLRLGLVPLTTPVDDFDI---------GDTVTLSLDIT----GPQT---------- 97
Query: 190 PNGSELPLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPMLDITIARLGPGQEIEL 249
Y+ S D L E ++ +I I L +EL
Sbjct: 98 ---------------------AYSGDIVSSDRLVEPADE------NIPIIELKENHRLEL 130
Query: 250 EAHAVKGIGKTHAKWSPVATAWYRMLPEIVLLEDVE---DED 288
EA AV GK+HAK YR L I ++ D + DED
Sbjct: 131 EADAVLDTGKSHAKQQGGVAVGYRHLQRIEVIGDADEFADED 172
>gi|448303016|ref|ZP_21492966.1| DNA-directed RNA polymerase subunit D [Natronorubrum sulfidifaciens
JCM 14089]
gi|445594023|gb|ELY48190.1| DNA-directed RNA polymerase subunit D [Natronorubrum sulfidifaciens
JCM 14089]
Length = 249
Score = 64.7 bits (156), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 61/213 (28%), Positives = 91/213 (42%), Gaps = 51/213 (23%)
Query: 73 CNNFRVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEV 132
++ VE + F + G+ A AN RR ++A++PT+AI+ V N+SV+ DE
Sbjct: 2 TEDYDVEFVEHEDRYARFLVRGVTPAFANGLRRAMLADVPTLAIDTVRFIENSSVMFDEQ 61
Query: 133 LAHRLGLIPIIVDPRLFEYMSENDTSNEKNTIVFKLHVLCERGGPRLTVKTNELKWLPNG 192
LA RLGL+P+ P E+ E +T+ + V GP T + +L
Sbjct: 62 LALRLGLVPLTTPPEA-EFA-------EGDTVTLSIDV----EGP-ATAYSGDL------ 102
Query: 193 SELPLETKPDSNPSSKPRTYTSFSSSQDLL-PEFSNNPIRPMLDITIARLGPGQEIELEA 251
SS DL+ P N PI + D Q +E EA
Sbjct: 103 -----------------------VSSDDLVQPADENVPIIDLKD--------DQRLEAEA 131
Query: 252 HAVKGIGKTHAKWSPVATAWYRMLPEIVLLEDV 284
AV GK HAK +A YR L + +++D+
Sbjct: 132 DAVFNRGKNHAKHQGAVSAGYRHLQRVEVVDDL 164
>gi|448337141|ref|ZP_21526223.1| DNA-directed RNA polymerase subunit D [Natrinema pallidum DSM 3751]
gi|445626487|gb|ELY79830.1| DNA-directed RNA polymerase subunit D [Natrinema pallidum DSM 3751]
Length = 249
Score = 64.7 bits (156), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 65/224 (29%), Positives = 93/224 (41%), Gaps = 52/224 (23%)
Query: 72 FCNNFRVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDE 131
+ VE + + F + G+ AN RR ++A++PTMAI+ V N+SV+ DE
Sbjct: 1 MSTEYDVEFVEREDREARFLVRGVTPGFANGIRRAMVADVPTMAIDTVRFVENSSVMFDE 60
Query: 132 VLAHRLGLIPIIVDPRLFEYMSENDTSNEKNTIVFKLHVLCERGGPRLTVKTNELKWLPN 191
LA RLGL+P+ P + E+ E T+ + V GP T + +L
Sbjct: 61 QLALRLGLVPLTT-PPVGEF-------GEDETVTLSIDVE----GP-ATAYSGDL----- 102
Query: 192 GSELPLETKPDSNPSSKPRTYTSFSSSQDLL-PEFSNNPIRPMLDITIARLGPGQEIELE 250
SS DL+ P N PI + D GQ +E E
Sbjct: 103 ------------------------VSSDDLVQPADENVPIIELKD--------GQRLEAE 130
Query: 251 AHAVKGIGKTHAKWSPVATAWYRMLPEIVLLEDV-EDEDAEKLV 293
A AV GK HAK YR L + + D+ E ED E+ +
Sbjct: 131 ADAVIDRGKDHAKHQGGVAVGYRHLQRVEVEGDLPEFEDEERRI 174
>gi|448712003|ref|ZP_21701546.1| DNA-directed RNA polymerase subunit D [Halobiforma nitratireducens
JCM 10879]
gi|445791088|gb|EMA41737.1| DNA-directed RNA polymerase subunit D [Halobiforma nitratireducens
JCM 10879]
Length = 249
Score = 64.3 bits (155), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 61/201 (30%), Positives = 86/201 (42%), Gaps = 54/201 (26%)
Query: 94 GIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRLGLIPIIVDPRLFEYMS 153
GI AN RR +IA++PTMAI+ V N+SV+ DE LA RLGL+P+ P
Sbjct: 23 GISPGFANGIRRAMIADVPTMAIDTVRFIENSSVMFDEQLALRLGLVPLTTPPE------ 76
Query: 154 ENDTSNEKNTIVFKLHVLCERGGPRLTVKTNELKWLPNGSELPLETKPDSNPSSKPRTYT 213
D E +T+ + V GP T + +L
Sbjct: 77 --DEFVEDDTVTLSIDV----EGP-ATAYSGDL--------------------------- 102
Query: 214 SFSSSQDLL-PEFSNNPIRPMLDITIARLGPGQEIELEAHAVKGIGKTHAKWSPVATAWY 272
S +DL+ P N PI + D Q +E EA AV GK HAK Y
Sbjct: 103 --VSEEDLVQPADENVPIIELKD--------DQRLEAEADAVLDYGKDHAKHQGGVAVGY 152
Query: 273 RMLPEIVLLEDV---EDEDAE 290
R L + +++D+ EDE+++
Sbjct: 153 RHLQRVEVVDDLPEFEDEESQ 173
>gi|452207493|ref|YP_007487615.1| DNA-directed RNA polymerase subunit D [Natronomonas moolapensis
8.8.11]
gi|452083593|emb|CCQ36905.1| DNA-directed RNA polymerase subunit D [Natronomonas moolapensis
8.8.11]
Length = 247
Score = 64.3 bits (155), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 62/219 (28%), Positives = 88/219 (40%), Gaps = 52/219 (23%)
Query: 72 FCNNFRVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDE 131
+ V I + F + GI A AN RR ++A++PT++++ V + N+SV+ DE
Sbjct: 1 MSGQYDVTFIERDERSARFLVRGISPAFANGIRRAMVADVPTLSVDTVRVIENSSVMFDE 60
Query: 132 VLAHRLGLIPIIVDPRLFEYMSENDTSNEKNTIVFKLHVLCERGGPRLTVKTNELKWLPN 191
+A RLGLIP ++ D + T+ + V GP T + +L
Sbjct: 61 QIALRLGLIP----------LTTPDDYEPEETVTLAIDV----EGP-ATAYSGDL----- 100
Query: 192 GSELPLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPMLDITIARLGPGQEIELEA 251
SS + P N P I L GQ +ELEA
Sbjct: 101 -----------------------VSSDGQVQPAEENVP--------IIDLKEGQRLELEA 129
Query: 252 HAVKGIGKTHAKWSPVATAWYRMLPEIVLLEDVEDEDAE 290
A G GK HAK YR L + L +D DE AE
Sbjct: 130 DAELGYGKDHAKHQGGVAVGYRHLQRVALGDD-RDEFAE 167
>gi|374327628|ref|YP_005085828.1| DNA-directed RNA polymerase subunit D (rpoD) [Pyrobaculum sp. 1860]
gi|356642897|gb|AET33576.1| DNA-directed RNA polymerase subunit D (rpoD) [Pyrobaculum sp. 1860]
Length = 260
Score = 64.3 bits (155), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 58/183 (31%), Positives = 87/183 (47%), Gaps = 44/183 (24%)
Query: 94 GIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRLGLIPIIVD----PRLF 149
G+ + N+ RR++I+ELP MAI+ V++ NNTSV+ DE+LAHRLGLIP+ P +
Sbjct: 20 GVPPTLINSLRRVIISELPVMAIDSVVVVNNTSVMYDEMLAHRLGLIPLTTPLSALPPIE 79
Query: 150 EYMSENDTSNEKNTIVFKLHVLCERGGPRLTVKTNELKWLPNGSELPLETKPDSNPSSKP 209
+ +S +E + +L + G LTV + +L + +PD P K
Sbjct: 80 DCVSGLADPSECSA---RLTLQVTADGD-LTVYSGDL----------VSERPDVAPVYK- 124
Query: 210 RTYTSFSSSQDLLPEFSNNPIRPMLDITIARLGPGQEIELEAHAVKGIGKTHAKWSPVAT 269
DI I +L GQ I LEA+A G+ + HAKW
Sbjct: 125 -------------------------DIPIVKLVKGQSIVLEAYAKLGVARDHAKWQAALA 159
Query: 270 AWY 272
++Y
Sbjct: 160 SYY 162
>gi|433590977|ref|YP_007280473.1| DNA-directed RNA polymerase, alpha subunit/40 kD subunit [Natrinema
pellirubrum DSM 15624]
gi|448334510|ref|ZP_21523685.1| DNA-directed RNA polymerase subunit D [Natrinema pellirubrum DSM
15624]
gi|448385452|ref|ZP_21563958.1| DNA-directed RNA polymerase subunit D [Haloterrigena thermotolerans
DSM 11522]
gi|433305757|gb|AGB31569.1| DNA-directed RNA polymerase, alpha subunit/40 kD subunit [Natrinema
pellirubrum DSM 15624]
gi|445619842|gb|ELY73359.1| DNA-directed RNA polymerase subunit D [Natrinema pellirubrum DSM
15624]
gi|445656947|gb|ELZ09779.1| DNA-directed RNA polymerase subunit D [Haloterrigena thermotolerans
DSM 11522]
Length = 249
Score = 63.9 bits (154), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 63/220 (28%), Positives = 91/220 (41%), Gaps = 52/220 (23%)
Query: 76 FRVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAH 135
+ VE + + F + G+ AN RR +IA++PTMAI+ V N+SV+ DE LA
Sbjct: 5 YDVEFVEREDREARFLVRGVTPGFANGIRRAMIADVPTMAIDTVRFVENSSVMFDEQLAL 64
Query: 136 RLGLIPIIVDPRLFEYMSENDTSNEKNTIVFKLHVLCERGGPRLTVKTNELKWLPNGSEL 195
R+GL+P+ P + E+ E +T+ + V
Sbjct: 65 RMGLVPLTT-PPVGEFA-------EDDTVTLSIDV------------------------- 91
Query: 196 PLETKPDSNPSSKPRTYTSFSSSQDLL-PEFSNNPIRPMLDITIARLGPGQEIELEAHAV 254
PD+ S S DL+ P N PI + D GQ +E EA AV
Sbjct: 92 ---EGPDTAYSG------DLVSEDDLVQPADENVPIIDLKD--------GQRLEAEADAV 134
Query: 255 KGIGKTHAKWSPVATAWYRMLPEIVLLEDV-EDEDAEKLV 293
GK HAK YR L + + D+ E ED E+ +
Sbjct: 135 IDRGKDHAKHQGGVAVGYRHLQRVEVEGDLPEFEDEERRI 174
>gi|448330852|ref|ZP_21520128.1| DNA-directed RNA polymerase subunit D [Natrinema versiforme JCM
10478]
gi|445610688|gb|ELY64457.1| DNA-directed RNA polymerase subunit D [Natrinema versiforme JCM
10478]
Length = 249
Score = 63.5 bits (153), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 60/222 (27%), Positives = 94/222 (42%), Gaps = 54/222 (24%)
Query: 72 FCNNFRVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDE 131
+ VE + + F + G+ AN RR ++A++PTMA++ V N+SV+ DE
Sbjct: 1 MTEEYDVEFVEREDREARFLIRGVTPGFANGIRRAMVADVPTMAVDTVRFVENSSVMFDE 60
Query: 132 VLAHRLGLIPIIVDPRLFEYMSENDTSNEKNTIVFKLHVLCERGGPRLTVKTNELKWLPN 191
LA R+GL+P+ P + E+ E T+ + V GP
Sbjct: 61 QLALRMGLVPLTT-PPVGEF-------GEDETVTLSIDVE----GP-------------- 94
Query: 192 GSELPLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPMLD-ITIARLGPGQEIELE 250
T++S DL+ E ++ ++P D + I L GQ +E E
Sbjct: 95 --------------------ATAYSG--DLVSE--DDLVQPADDNVPIIELKDGQRLEAE 130
Query: 251 AHAVKGIGKTHAKWSPVATAWYRMLPEIVL---LEDVEDEDA 289
A AV GK HAK YR L + + L + EDE++
Sbjct: 131 ADAVVNRGKNHAKHQGGVAVGYRHLQRVEVDGDLPEFEDEES 172
>gi|448346280|ref|ZP_21535166.1| DNA-directed RNA polymerase subunit D [Natrinema altunense JCM
12890]
gi|445632869|gb|ELY86075.1| DNA-directed RNA polymerase subunit D [Natrinema altunense JCM
12890]
Length = 249
Score = 63.5 bits (153), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 64/218 (29%), Positives = 92/218 (42%), Gaps = 54/218 (24%)
Query: 76 FRVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAH 135
+ VE + + F + G+ AN RR ++A++PTMAI+ V N+SV+ DE LA
Sbjct: 5 YDVEFVEREDREARFLVRGVTPGFANGIRRAMVADVPTMAIDTVRFVENSSVMFDEQLAL 64
Query: 136 RLGLIPIIVDPRLFEYMSENDTSNEKNTIVFKLHVLCERGGPRLTVKTNELKWLPNGSEL 195
RLGL+P+ P + E+ E T+ + V GP T + +L
Sbjct: 65 RLGLVPLTT-PPVGEF-------GEDETVTLSIDVE----GP-ATAYSGDL--------- 102
Query: 196 PLETKPDSNPSSKPRTYTSFSSSQDLL-PEFSNNPIRPMLDITIARLGPGQEIELEAHAV 254
SS DL+ P N PI + D GQ +E EA AV
Sbjct: 103 --------------------VSSDDLVEPADENVPIIELKD--------GQRLEAEADAV 134
Query: 255 KGIGKTHAKWSPVATAWYRMLPEIVL---LEDVEDEDA 289
GK HAK YR L + + L + EDE++
Sbjct: 135 IDRGKDHAKHQGGVAVGYRHLQRVEVEGDLPEFEDEES 172
>gi|291334097|gb|ADD93769.1| putative RNA polymerase Rpb3/Rpb11 dimerisation domain protein
[uncultured marine bacterium MedDCM-OCT-S05-C222]
Length = 310
Score = 63.5 bits (153), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 61/194 (31%), Positives = 86/194 (44%), Gaps = 32/194 (16%)
Query: 92 LIGIDAAIANAFRRILIAELPTMAIEKV------------LIANNTSVIQDEVLAHRLGL 139
L DAA NA RR LIA++P +AI+KV I + +V+ DEV+AHRL +
Sbjct: 19 LSNTDAAQVNAVRRALIADVPKLAIDKVNFTQGVNQDNKGEILESVNVLPDEVIAHRLAM 78
Query: 140 IPIIVDPRLFEYMSENDTSNEKNTIVFKLHVLCERGGPRLTVKTNELKWLPNGSELPLET 199
IPI P M +D N K+ L E +T + E P E
Sbjct: 79 IPIPTHPDE-GMMHPDDCPNCKD--------LAEESKGCMTCQV----LYHIRKEGPSE- 124
Query: 200 KPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPMLDITIARLGPGQEIELEAHAVKGIGK 259
DS + + ++ D + + + R I + L GQ +EL A A G G+
Sbjct: 125 --DSEETVRTVYAGDLTNISDQMFDIRDEHKR----IPLTVLSKGQFLELYAFATLGRGR 178
Query: 260 THAKWSPVATAWYR 273
H+KWSPVA +R
Sbjct: 179 QHSKWSPVAAVGFR 192
>gi|385305361|gb|EIF49344.1| dna-directed rna polymerase ii 45 kda polypeptide [Dekkera
bruxellensis AWRI1499]
Length = 268
Score = 63.2 bits (152), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 51/174 (29%), Positives = 78/174 (44%), Gaps = 32/174 (18%)
Query: 107 LIAELPTMAIEKVLIANNTSVIQDEVLAHRLGLIPIIVDPRLFEYMSENDTSNEKNTIVF 166
++AE+PT+AI+ V I NTSV+ DE LAHRLGL+P+ S + + + +
Sbjct: 1 MLAEVPTLAIDLVDIKRNTSVLADEFLAHRLGLVPL--------------ESEDIDQLKY 46
Query: 167 KLHVLCERGGPRLTVKTNELKWLPNGSELPLETKPDS----NPSSKPRTYTSFSSSQDLL 222
CE + +V L L+ + DS N S S ++ +L
Sbjct: 47 TRDCTCEDHCEKCSVT------------LQLKARCDSDETMNVYSSHLVVISANTGLNLG 94
Query: 223 PEFSNNPIRPMLDITIARLGPGQEIELEAHAVKGIGKTHAKWSPVATAWYRMLP 276
+P + + I +L QE+ + A KGI K HAKWSP + + P
Sbjct: 95 QPVIRDPQKK--GVLICKLKRHQELNIVCIAKKGIAKEHAKWSPCSAIGFEYDP 146
>gi|388522223|gb|AFK49173.1| unknown [Lotus japonicus]
Length = 237
Score = 63.2 bits (152), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 34/73 (46%), Positives = 47/73 (64%), Gaps = 4/73 (5%)
Query: 236 ITIARLGPGQEIELEAHAVKGIGKTHAKWSPVATAWYRMLPEIV----LLEDVEDEDAEK 291
I I +L GQE+ L A A KGIGK HAKWSP AT + PEI L+E + ++ ++
Sbjct: 70 IIIVKLRRGQELRLRAIARKGIGKDHAKWSPAATVSFMYEPEIHINDDLMETLTLKEKKE 129
Query: 292 LVKTCPVNVFDIE 304
V++CP +VFDI+
Sbjct: 130 WVESCPTHVFDID 142
>gi|397772870|ref|YP_006540416.1| DNA-directed RNA polymerase [Natrinema sp. J7-2]
gi|448340555|ref|ZP_21529526.1| DNA-directed RNA polymerase subunit D [Natrinema gari JCM 14663]
gi|397681963|gb|AFO56340.1| DNA-directed RNA polymerase [Natrinema sp. J7-2]
gi|445629988|gb|ELY83258.1| DNA-directed RNA polymerase subunit D [Natrinema gari JCM 14663]
Length = 249
Score = 63.2 bits (152), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 62/217 (28%), Positives = 91/217 (41%), Gaps = 52/217 (23%)
Query: 76 FRVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAH 135
+ VE + + F + G+ AN RR ++A++PTMAI+ V N+SV+ DE LA
Sbjct: 5 YDVEFVEREDREARFLVRGVTPGFANGIRRAMVADVPTMAIDTVRFVENSSVMFDEQLAL 64
Query: 136 RLGLIPIIVDPRLFEYMSENDTSNEKNTIVFKLHVLCERGGPRLTVKTNELKWLPNGSEL 195
RLGL+P+ P + E+ E T+ + V GP T + +L
Sbjct: 65 RLGLVPLTT-PPVGEF-------GEDETVTLSIDVE----GP-ATAYSGDL--------- 102
Query: 196 PLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPMLDITIARLGPGQEIELEAHAVK 255
SS + + P N PI + D GQ +E EA AV
Sbjct: 103 -------------------VSSDELVKPADENVPIIELKD--------GQRLEAEADAVI 135
Query: 256 GIGKTHAKWSPVATAWYRMLPEIVL---LEDVEDEDA 289
GK HAK YR L + + L + EDE++
Sbjct: 136 DRGKDHAKHQGGVAVGYRHLQRVEVEGDLPEFEDEES 172
>gi|435847148|ref|YP_007309398.1| DNA-directed RNA polymerase, alpha subunit/40 kD subunit
[Natronococcus occultus SP4]
gi|433673416|gb|AGB37608.1| DNA-directed RNA polymerase, alpha subunit/40 kD subunit
[Natronococcus occultus SP4]
Length = 249
Score = 63.2 bits (152), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 56/213 (26%), Positives = 87/213 (40%), Gaps = 49/213 (23%)
Query: 72 FCNNFRVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDE 131
+ VE + + F + GI AN RR ++A++PTMAI+ V N+SV+ DE
Sbjct: 1 MSEEYDVEFVERGDREARFLVRGISPGFANGIRRAMVADVPTMAIDTVRFIENSSVMFDE 60
Query: 132 VLAHRLGLIPIIVDPRLFEYMSENDTSNEKNTIVFKLHVLCERGGPRLTVKTNELKWLPN 191
LA RLGL+P+ P E++ E +T+ + V
Sbjct: 61 QLALRLGLVPLTTPPE-GEFV-------EDDTVTLSIDV--------------------- 91
Query: 192 GSELPLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPMLDITIARLGPGQEIELEA 251
P++ Y+ S D L E ++ ++ I L GQ +E EA
Sbjct: 92 -----------EGPAT---AYSGDLVSSDSLVEPADE------NVPIIELKEGQRLEAEA 131
Query: 252 HAVKGIGKTHAKWSPVATAWYRMLPEIVLLEDV 284
A GK HAK YR L + +++D+
Sbjct: 132 DARLERGKDHAKHQGGVAVGYRHLQRVEVVDDL 164
>gi|429192481|ref|YP_007178159.1| DNA-directed RNA polymerase subunit alpha [Natronobacterium
gregoryi SP2]
gi|448325893|ref|ZP_21515271.1| DNA-directed RNA polymerase subunit D [Natronobacterium gregoryi
SP2]
gi|429136699|gb|AFZ73710.1| DNA-directed RNA polymerase, alpha subunit/40 kD subunit
[Natronobacterium gregoryi SP2]
gi|445613985|gb|ELY67670.1| DNA-directed RNA polymerase subunit D [Natronobacterium gregoryi
SP2]
Length = 249
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 67/239 (28%), Positives = 98/239 (41%), Gaps = 59/239 (24%)
Query: 72 FCNNFRVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDE 131
+ VE + + F + + A AN RR ++A++PTMAI+ V N+SV+ DE
Sbjct: 1 MTEEYDVEFVERDDRNARFLVRNVTPAFANGIRRAMLADVPTMAIDTVRFVENSSVMFDE 60
Query: 132 VLAHRLGLIPIIVDPRLFEYMSENDTSNEKNTIVFKLHVLCERGGPRLTVKTNELKWLPN 191
LA RLGL+P+ P E+ E +T+ + V GP T + +L
Sbjct: 61 QLALRLGLVPLTTPPE-GEF-------GEDDTVTLSIDV----EGP-ATAYSGDL----- 102
Query: 192 GSELPLETKPDSNPSSKPRTYTSFSSSQDLL-PEFSNNPIRPMLDITIARLGPGQEIELE 250
SS DL+ P N PI + D GQ +E E
Sbjct: 103 ------------------------VSSDDLVQPADENVPIIELKD--------GQRLEAE 130
Query: 251 AHAVKGIGKTHAKWSPVATAWYRMLPEIVLLEDVE--DEDAEKLVKTCPVNVFDIEDIG 307
A A GK HAK YR L + ++ DV +E+ ++V+ IED G
Sbjct: 131 AEATLDRGKEHAKHQGGVAVGYRHLQHVEVVGDVPEFEEEGSRIVRGV------IEDDG 183
>gi|448317558|ref|ZP_21507108.1| DNA-directed RNA polymerase subunit D [Natronococcus jeotgali DSM
18795]
gi|445602949|gb|ELY56919.1| DNA-directed RNA polymerase subunit D [Natronococcus jeotgali DSM
18795]
Length = 249
Score = 62.4 bits (150), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 56/213 (26%), Positives = 87/213 (40%), Gaps = 49/213 (23%)
Query: 72 FCNNFRVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDE 131
+ VE + + F + GI AN RR ++A++PTMAI+ V N+SV+ DE
Sbjct: 1 MSEEYDVEFVERGDREARFLVRGITPGFANGIRRAMVADVPTMAIDTVRFIENSSVMFDE 60
Query: 132 VLAHRLGLIPIIVDPRLFEYMSENDTSNEKNTIVFKLHVLCERGGPRLTVKTNELKWLPN 191
LA RLGL+P+ P E++ E +T+ + V
Sbjct: 61 QLALRLGLVPLTTPPE-GEFV-------EDDTVTLSIDV--------------------- 91
Query: 192 GSELPLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPMLDITIARLGPGQEIELEA 251
P++ Y+ S D L E ++ ++ I L GQ +E EA
Sbjct: 92 -----------EGPAT---AYSGDLVSSDSLVEPADE------NVPIIELKDGQRLEAEA 131
Query: 252 HAVKGIGKTHAKWSPVATAWYRMLPEIVLLEDV 284
A GK HAK YR L + +++D+
Sbjct: 132 DARLERGKDHAKHQGGVAVGYRHLQRVEVVDDL 164
>gi|300711111|ref|YP_003736925.1| DNA-directed RNA polymerase subunit D [Halalkalicoccus jeotgali B3]
gi|448296790|ref|ZP_21486841.1| DNA-directed RNA polymerase subunit D [Halalkalicoccus jeotgali B3]
gi|299124794|gb|ADJ15133.1| DNA-directed RNA polymerase subunit D [Halalkalicoccus jeotgali B3]
gi|445580773|gb|ELY35147.1| DNA-directed RNA polymerase subunit D [Halalkalicoccus jeotgali B3]
Length = 248
Score = 62.4 bits (150), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 58/202 (28%), Positives = 82/202 (40%), Gaps = 51/202 (25%)
Query: 74 NNFRVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVL 133
NF VE+I F + G A AN RR ++A++PT++I+ V N+SV+ +E L
Sbjct: 3 GNFDVEIIERDDRSARFLVRGATPAFANGIRRAMLADVPTLSIDSVRFIENSSVMFNEQL 62
Query: 134 AHRLGLIPIIVDPRLFEYMSENDTSNEKNTIVFKLHVLCERGGPRLTVKTNELKWLPNGS 193
A RLGL+P+ P +E E T+ + GP T + +L
Sbjct: 63 ALRLGLVPLST-PEDYEL-------GEDVTLALDVE------GP-ATAYSGDL------- 100
Query: 194 ELPLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPMLDITIARLGPGQEIELEAHA 253
SS + + P N P I L GQ +ELEA A
Sbjct: 101 ---------------------VSSDEQVEPADRNVP--------IIELKEGQRLELEADA 131
Query: 254 VKGIGKTHAKWSPVATAWYRML 275
V +G+ HAK YR L
Sbjct: 132 VLDVGREHAKHQGGVAVGYRHL 153
>gi|402217101|gb|EJT97183.1| hypothetical protein DACRYDRAFT_59476 [Dacryopinax sp. DJM-731 SS1]
Length = 257
Score = 62.0 bits (149), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 40/133 (30%), Positives = 65/133 (48%), Gaps = 2/133 (1%)
Query: 217 SSQDLLPEF-SNNPIRPMLDITIARLGPGQEIELEAHAVKGIGKTHAKWSPVATAWYRML 275
+Q LP++ + P DI + +L GQE+ +E H VK G+ HAK+SPVATA R+L
Sbjct: 58 GAQAALPDYLAEAPSVAKPDIILVKLRRGQELNIEMHCVKSCGRDHAKYSPVATATSRLL 117
Query: 276 PEIVLLEDVEDEDAEKLVKTCPVNVFDIEDIGSGKKRATVAQPRACTLCRECLRCGEEWE 335
P + + + + ++ K ++ V + V R T+ R E+E
Sbjct: 118 PYVRIFKSIPEQLQAKFTQSFSPGVIGSRRNKQWEWEVFVKDARKDTMSRNVF-LYPEFE 176
Query: 336 KRVSIRRVKDHFI 348
V + RV+D F+
Sbjct: 177 GAVKLTRVRDRFL 189
>gi|448400361|ref|ZP_21571353.1| DNA-directed RNA polymerase subunit D [Haloterrigena limicola JCM
13563]
gi|445667384|gb|ELZ20027.1| DNA-directed RNA polymerase subunit D [Haloterrigena limicola JCM
13563]
Length = 249
Score = 62.0 bits (149), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 58/207 (28%), Positives = 84/207 (40%), Gaps = 49/207 (23%)
Query: 72 FCNNFRVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDE 131
+ VE + + F + G+ A AN RR ++A++PTMAI+ V N+SV+ DE
Sbjct: 1 MTEEYDVEFVEREDREARFLVRGVTPAFANGIRRAMVADVPTMAIDTVRFVENSSVMFDE 60
Query: 132 VLAHRLGLIPIIVDPRLFEYMSENDTSNEKNTIVFKLHVLCERGGPRLTVKTNELKWLPN 191
LA RLGL+P+ P + E+ E +T+ + V GP T + +L
Sbjct: 61 QLALRLGLVPLTT-PPVGEF-------TEDDTVTLSIDV----EGP-ATAYSGDL----- 102
Query: 192 GSELPLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPMLDITIARLGPGQEIELEA 251
SS + + P N PI + D Q +E EA
Sbjct: 103 -----------------------VSSDELVQPADENIPIIELKD--------DQRLEAEA 131
Query: 252 HAVKGIGKTHAKWSPVATAWYRMLPEI 278
AV GK HAK YR L +
Sbjct: 132 DAVLDRGKDHAKHQGGVAVGYRHLQRV 158
>gi|448391689|ref|ZP_21566784.1| DNA-directed RNA polymerase subunit D [Haloterrigena salina JCM
13891]
gi|445665101|gb|ELZ17779.1| DNA-directed RNA polymerase subunit D [Haloterrigena salina JCM
13891]
Length = 249
Score = 62.0 bits (149), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 57/221 (25%), Positives = 91/221 (41%), Gaps = 52/221 (23%)
Query: 72 FCNNFRVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDE 131
+ VE + + + F + G+ AN RR ++A++PTMAI+ V N+SV+ DE
Sbjct: 1 MTEEYDVEFVERGEREARFLVRGVTPGFANGIRRAMLADVPTMAIDTVRFVENSSVMFDE 60
Query: 132 VLAHRLGLIPIIVDPRLFEYMSENDTSNEKNTIVFKLHVLCERGGPRLTVKTNELKWLPN 191
LA RLGL+P+ P E T+ + V
Sbjct: 61 QLALRLGLVPLTTPPE--------GEFGEDETVTLSIDV--------------------- 91
Query: 192 GSELPLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPMLDITIARLGPGQEIELEA 251
P++ Y+ S D L + ++ + P++D L Q +E EA
Sbjct: 92 -----------EGPAT---AYSGDLVSNDELVQPADQNV-PIID-----LKDDQRLEAEA 131
Query: 252 HAVKGIGKTHAKWSPVATAWYRMLPEIVLLEDV---EDEDA 289
AV GK HAK YR L ++ ++ D+ EDE++
Sbjct: 132 DAVVDYGKDHAKHQGGVAVGYRHLQQVEVVGDLPEFEDEES 172
>gi|343469407|emb|CCD17607.1| unnamed protein product, partial [Trypanosoma congolense IL3000]
Length = 141
Score = 62.0 bits (149), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 26/53 (49%), Positives = 39/53 (73%)
Query: 90 FDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRLGLIPI 142
F L +D + AN RR+L+AE+P +A+ V I NTSV+ DE++AHR+GL+P+
Sbjct: 21 FQLDEVDNSFANGLRRVLLAEVPVLAVVSVTIVQNTSVLPDEMIAHRIGLVPL 73
>gi|392569943|gb|EIW63116.1| hypothetical protein TRAVEDRAFT_17573 [Trametes versicolor
FP-101664 SS1]
Length = 454
Score = 62.0 bits (149), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 51/167 (30%), Positives = 76/167 (45%), Gaps = 12/167 (7%)
Query: 115 AIEKVLIANNTSVIQDEVLAHRLGLIPIIVDPRLFEYMSENDTSNEKN----TIVFKLHV 170
AI+ V I NT+V+ DE +AHRLG+IP++ D + E I L+V
Sbjct: 83 AIDMVEIETNTTVLPDEFIAHRLGMIPLVSTNCDEAMRYTRDCTCEVRCQYCAIELMLNV 142
Query: 171 LCERGGPRLTVKTNELKWLPNGSELPLETKPDSNPSSK-PRTYTSFSSSQDLLPEFSNNP 229
C GG + + ++ L+ +P DS+ S + + SF P +P
Sbjct: 143 SCHEGGHTMDITSDMLEVVPTSRPGFGGFDADSDGSEELAKRVESFGH-----PIGQGDP 197
Query: 230 IRPMLDITIARLGPGQEIELEAHAVKGIGKTHAKWSPVATAWYRMLP 276
P I I ++ GQE+ + A KGI K H+KWSP A + P
Sbjct: 198 STP--PILICKIRKGQELRIRCIAKKGIAKEHSKWSPCAAVGFEYDP 242
>gi|126460700|ref|YP_001056978.1| DNA-directed RNA polymerase subunit D [Pyrobaculum calidifontis JCM
11548]
gi|166229320|sp|A3MXZ5.1|RPOD_PYRCJ RecName: Full=DNA-directed RNA polymerase subunit D
gi|126250421|gb|ABO09512.1| DNA-directed RNA polymerase, subunit D [Pyrobaculum calidifontis
JCM 11548]
Length = 258
Score = 62.0 bits (149), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 56/189 (29%), Positives = 87/189 (46%), Gaps = 41/189 (21%)
Query: 94 GIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRLGLIPIIVDPRLFEYMS 153
G+ ++ N+ RR++I+ELP +AI+ V++ NNTSV+ DE+LAHRLGLIP+ + +
Sbjct: 20 GVPPSLINSLRRVIISELPVLAIDSVVVVNNTSVMYDEMLAHRLGLIPLTTPLKDLPPIE 79
Query: 154 ENDTSNEKNTIVFKLHVLCERGGPRLTVKTNELKWLPNGSELPLETKPDSNPSSKPRTYT 213
+ CE G L + SE + N + Y
Sbjct: 80 D-----------------CESG-------------LVDPSECTVRLTLQVNATGDVVVYA 109
Query: 214 S--FSSSQDLLPEFSNNPIRPMLDITIARLGPGQEIELEAHAVKGIGKTHAKWSPVATAW 271
+ D+ P + DI I +L GQ + +EA+A G + HAKW A A
Sbjct: 110 GDLVADRPDVAPVYK--------DIPIVKLVEGQSVVVEAYAKLGRARDHAKWQ-AALAS 160
Query: 272 YRMLPEIVL 280
Y P++V+
Sbjct: 161 YYYYPKVVV 169
>gi|339250374|ref|XP_003374172.1| DNA-directed RNA polymerase II subunit RPB3 [Trichinella spiralis]
gi|316969579|gb|EFV53647.1| DNA-directed RNA polymerase II subunit RPB3 [Trichinella spiralis]
Length = 213
Score = 61.2 bits (147), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 56/210 (26%), Positives = 85/210 (40%), Gaps = 44/210 (20%)
Query: 78 VEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRL 137
+++I+L + ++F L + AN RRI IAE P L HRL
Sbjct: 29 IDIIQLNDEVIKFSLANTRLSFANCLRRIFIAETP-------------------CLVHRL 69
Query: 138 GLIPIIVDPRL--FEYMSENDTSNEKNTIVFKLHVLCE-RGGPRLTVKTNELKWLPNGSE 194
GL+P+ D + + E S+ + +L + + R V T +LK
Sbjct: 70 GLLPLTSDETVSRMRFARECQCSDHCSECAVQLTLEKQCRDESTHVVSTADLK------- 122
Query: 195 LPLETKPDSNPSSKPRT--YTSFSSSQDLLPEF--SNNPIRPMLDITIARLGPGQEIELE 250
S PR F + Q F ++ + I IA+L GQE+ +
Sbjct: 123 -----------SQDPRVIPLHQFKTDQKNTMHFRLADRNGKLSTKIIIAKLCRGQELNVV 171
Query: 251 AHAVKGIGKTHAKWSPVATAWYRMLPEIVL 280
A KGIGK HAKW+P A+ + P+ L
Sbjct: 172 CLARKGIGKEHAKWNPTASVAFEYDPDNAL 201
>gi|383621940|ref|ZP_09948346.1| DNA-directed RNA polymerase subunit D [Halobiforma lacisalsi AJ5]
gi|448702865|ref|ZP_21700222.1| DNA-directed RNA polymerase subunit D [Halobiforma lacisalsi AJ5]
gi|445776958|gb|EMA27934.1| DNA-directed RNA polymerase subunit D [Halobiforma lacisalsi AJ5]
Length = 249
Score = 61.2 bits (147), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 61/222 (27%), Positives = 95/222 (42%), Gaps = 54/222 (24%)
Query: 72 FCNNFRVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDE 131
+ VE + + + F + GI AN RR ++A++PTMAI+ V N+SV+ DE
Sbjct: 1 MSEEYDVEFVEHGEREARFLVRGISPGFANGIRRAMVADVPTMAIDTVRFIENSSVMFDE 60
Query: 132 VLAHRLGLIPIIVDPRLFEYMSENDTSNEKNTIVFKLHVLCERGGPRLTVKTNELKWLPN 191
LA RLGL+P+ P E+ E +T+ + V GP
Sbjct: 61 QLALRLGLVPLTTPPE-GEF-------GEDDTVTLSIDV----EGP-------------- 94
Query: 192 GSELPLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPM-LDITIARLGPGQEIELE 250
T++S DL+ E ++ ++P ++ I L Q +E E
Sbjct: 95 --------------------ATAYSG--DLVSE--DDLVQPADENVPIIELKEDQRLEAE 130
Query: 251 AHAVKGIGKTHAKWSPVATAWYRMLPEIVLLEDV---EDEDA 289
A AV GK HAK YR L + ++ D+ EDE++
Sbjct: 131 ADAVLDHGKDHAKHQGGVAIGYRHLQRVEVVGDLPEFEDEES 172
>gi|424812604|ref|ZP_18237844.1| DNA-directed RNA polymerase, alpha subunit/40 kD subunit
[Candidatus Nanosalinarum sp. J07AB56]
gi|339756826|gb|EGQ40409.1| DNA-directed RNA polymerase, alpha subunit/40 kD subunit
[Candidatus Nanosalinarum sp. J07AB56]
Length = 188
Score = 61.2 bits (147), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 53/202 (26%), Positives = 87/202 (43%), Gaps = 53/202 (26%)
Query: 76 FRVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAH 135
+E I T + + L + A+AN RR ++ ++PTMA++++ + N S + DE+LA+
Sbjct: 1 MNLETIEETDEVLHVQLEDANPAVANTLRRSMMTKVPTMAVQQLRVNQNQSGLFDEMLAN 60
Query: 136 RLGLIPIIVDPRLFEYMSENDTSNEKNTIVFKLHVLCERGGPRLTVKTNELKWLPNGSEL 195
R+G IP+ + P F+ E+DT+ + L G R+T
Sbjct: 61 RVGQIPLTI-PEGFD---EDDTA---------VLALDREGETRVT--------------- 92
Query: 196 PLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPMLDITIARLGPGQEIELEAHAVK 255
++DL N + P+ D TI +L GQ+++ EA A
Sbjct: 93 ----------------------AEDLSA--GNYDVTPVNDTTIVKLKEGQDLKFEADAEL 128
Query: 256 GIGKTHAKWSPVATAWYRMLPE 277
G G HAK T Y + E
Sbjct: 129 GYGTEHAKHQG-GTVGYEKVDE 149
>gi|429962561|gb|ELA42105.1| hypothetical protein VICG_00746 [Vittaforma corneae ATCC 50505]
Length = 233
Score = 60.5 bits (145), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 51/197 (25%), Positives = 89/197 (45%), Gaps = 39/197 (19%)
Query: 76 FRVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAH 135
+ V LTK +++F I + AN+ RRIL+ E+P++AI+ V I N++V+ DE++A+
Sbjct: 1 MQFTVKELTKLNIKFT-ISSSVSFANSLRRILLGEVPSIAIDVVEIKENSTVLPDEMVAN 59
Query: 136 RLGLIPIIVDPRLFEYMSENDTSNEKNTIVFKLHVLCERGGPRLTVKTNELKWLPNGSEL 195
RLGL+PI +++ K C+ + ++K
Sbjct: 60 RLGLVPI----------------KYAGSLIPKQECKCDGFCDQCSIK------------F 91
Query: 196 PLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPMLDITIARLGPGQEIELEAHAVK 255
L+ + D++ + QDL + L I RL PGQ++++ A
Sbjct: 92 ILKKRNDTDS-------VISVNGQDLQTDVPGVHCSAAL---ILRLAPGQKLDMICIATI 141
Query: 256 GIGKTHAKWSPVATAWY 272
G +TH K+ PV +
Sbjct: 142 GTPQTHVKYCPVTVVGF 158
>gi|448534354|ref|ZP_21621682.1| DNA-directed RNA polymerase subunit D [Halorubrum hochstenium ATCC
700873]
gi|445704836|gb|ELZ56743.1| DNA-directed RNA polymerase subunit D [Halorubrum hochstenium ATCC
700873]
Length = 250
Score = 60.5 bits (145), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 51/187 (27%), Positives = 75/187 (40%), Gaps = 50/187 (26%)
Query: 94 GIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRLGLIPIIVDPRLFEYMS 153
G+ A+AN RR +IA++PT +I+ V N+SV+ DE++ RLGLIP+ FE
Sbjct: 24 GLTPALANGIRRAMIADVPTFSIDTVRFVENSSVMFDEMIGLRLGLIPLTTPLDDFEVGD 83
Query: 154 ENDTSNEKNTIVFKLHVLCERGGPRLTVKTNELKWLPNGSELPLETKPDSNPSSKPRTYT 213
E + L V P++ Y+
Sbjct: 84 E---------VTLALDV--------------------------------EGPAT---AYS 99
Query: 214 SFSSSQDLLPEFSNNPIRPMLDITIARLGPGQEIELEAHAVKGIGKTHAKWSPVATAWYR 273
S D L E ++ ++ I L GQ +E EA AV GK HAK + YR
Sbjct: 100 GDIESSDPLVEVADE------NVPIIELKEGQRLEFEADAVLDTGKEHAKHQGGVSVGYR 153
Query: 274 MLPEIVL 280
L + +
Sbjct: 154 HLQRVTV 160
>gi|448491314|ref|ZP_21608255.1| DNA-directed RNA polymerase subunit D [Halorubrum californiensis
DSM 19288]
gi|445693085|gb|ELZ45247.1| DNA-directed RNA polymerase subunit D [Halorubrum californiensis
DSM 19288]
Length = 250
Score = 60.5 bits (145), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 50/185 (27%), Positives = 75/185 (40%), Gaps = 50/185 (27%)
Query: 94 GIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRLGLIPIIVDPRLFEYMS 153
G+ A AN RR +IA++PT +I+ V N+SV+ DE++ RLGL+P+ FE
Sbjct: 24 GLTPAFANGIRRAMIADVPTFSIDTVQFVENSSVMFDEMIGLRLGLVPLTTPLDDFELGD 83
Query: 154 ENDTSNEKNTIVFKLHVLCERGGPRLTVKTNELKWLPNGSELPLETKPDSNPSSKPRTYT 213
E + L V P++ Y+
Sbjct: 84 E---------VTLALDV--------------------------------EGPAT---AYS 99
Query: 214 SFSSSQDLLPEFSNNPIRPMLDITIARLGPGQEIELEAHAVKGIGKTHAKWSPVATAWYR 273
S D L E +++ ++ I L GQ +E EA+AV GK HAK + YR
Sbjct: 100 GDIESSDPLVEVADD------NVPIIELKEGQRLEFEANAVLDTGKEHAKHQGGVSVGYR 153
Query: 274 MLPEI 278
L +
Sbjct: 154 HLQRV 158
>gi|433638723|ref|YP_007284483.1| DNA-directed RNA polymerase, alpha subunit/40 kD subunit [Halovivax
ruber XH-70]
gi|433290527|gb|AGB16350.1| DNA-directed RNA polymerase, alpha subunit/40 kD subunit [Halovivax
ruber XH-70]
Length = 250
Score = 60.5 bits (145), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 61/222 (27%), Positives = 93/222 (41%), Gaps = 51/222 (22%)
Query: 72 FCNNFRVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDE 131
+++ VE + T+ + + GI A AN RR ++A++PT+AI+ V N+SV+ DE
Sbjct: 1 MASDYDVEFVERTEREARILVRGITPAFANGIRRAMVADVPTLAIDTVRFIENSSVMFDE 60
Query: 132 VLAHRLGLIPIIVDPRLFEYMSENDTSNEKNTIVFKLHVLCERGGPRLTVKTNELKWLPN 191
L RLGL+P+ P E+ ++ V L + E GP T + +L
Sbjct: 61 QLGLRLGLVPLTT-PTPEEFGDDD---------VVTLSIDVE--GP-ATAYSGDL----- 102
Query: 192 GSELPLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPMLDITIARLGPGQEIELEA 251
SS DL+ N + I +L Q +E EA
Sbjct: 103 -----------------------VSSEPDLVKPADEN-------VPIIQLKDDQRLEAEA 132
Query: 252 HAVKGIGKTHAKWSPVATAWYRMLPEIVL---LEDVEDEDAE 290
AV GK HAK YR L + + L + EDE+ +
Sbjct: 133 DAVYDHGKKHAKHQGGVAVGYRHLQRVTVDGDLPEFEDEETQ 174
>gi|222480231|ref|YP_002566468.1| RNA polymerase insert [Halorubrum lacusprofundi ATCC 49239]
gi|222453133|gb|ACM57398.1| RNA polymerase insert [Halorubrum lacusprofundi ATCC 49239]
Length = 250
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 52/185 (28%), Positives = 74/185 (40%), Gaps = 50/185 (27%)
Query: 94 GIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRLGLIPIIVDPRLFEYMS 153
G+ A AN RR +IA++PT +I+ V N+SV+ DE++ RLGLIP+ FE
Sbjct: 24 GLTPAFANGIRRAMIADVPTFSIDTVRFVENSSVMFDEMIGLRLGLIPLKTPLDDFEVGD 83
Query: 154 ENDTSNEKNTIVFKLHVLCERGGPRLTVKTNELKWLPNGSELPLETKPDSNPSSKPRTYT 213
E + L V P++ Y+
Sbjct: 84 E---------VTLALDV--------------------------------EGPAT---AYS 99
Query: 214 SFSSSQDLLPEFSNNPIRPMLDITIARLGPGQEIELEAHAVKGIGKTHAKWSPVATAWYR 273
S D L E +++ +I I L GQ +E EA AV GK HAK + YR
Sbjct: 100 GDIESADPLVEVADD------NIPIIELKEGQRLEFEADAVLDTGKEHAKHQGGVSVGYR 153
Query: 274 MLPEI 278
L +
Sbjct: 154 HLQRV 158
>gi|257076683|ref|ZP_05571044.1| DNA-directed RNA polymerase subunit D [Ferroplasma acidarmanus
fer1]
Length = 269
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 56/210 (26%), Positives = 87/210 (41%), Gaps = 54/210 (25%)
Query: 78 VEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVL------------IANNT 125
++++ L + + F + GI AIAN+ RR LI ++P +AIE V+ + +++
Sbjct: 1 MKILELKDNFIRFSIDGITPAIANSIRRTLINDIPKLAIENVIYHHGEIRDADGNVYDSS 60
Query: 126 SVIQDEVLAHRLGLIPIIVDPRLFEYMSENDTSNEKNTIVFKLHVLCERGGPRLTVKTNE 185
+ DE+LA R+GLIP+ D +S N F+ C G L T
Sbjct: 61 LPLFDEILASRIGLIPLKTD------LSMN----------FRDECSCGGKGCDLCTVTYS 104
Query: 186 LKWLPNGSELPLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPMLD--ITIARLGP 243
+ L G S D++P NNP + D I I L
Sbjct: 105 INKLGPG----------------------MVYSSDIMP--VNNPELTVTDPLIPIVELKK 140
Query: 244 GQEIELEAHAVKGIGKTHAKWSPVATAWYR 273
Q + + A+ G GK HAKW + Y+
Sbjct: 141 NQAMLVTCEAILGRGKEHAKWQATSGVSYK 170
>gi|284165822|ref|YP_003404101.1| RNA polymerase insert [Haloterrigena turkmenica DSM 5511]
gi|284015477|gb|ADB61428.1| RNA polymerase insert [Haloterrigena turkmenica DSM 5511]
Length = 249
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 57/192 (29%), Positives = 79/192 (41%), Gaps = 51/192 (26%)
Query: 94 GIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRLGLIPIIVDPRLFEYMS 153
G+ AN RR ++A++PTMAI+ V N+SV+ DE LA RLGL+P+ P E+
Sbjct: 23 GVTPGFANGIRRAMLADVPTMAIDTVRFVENSSVMFDEQLALRLGLVPLTTPPE-GEF-- 79
Query: 154 ENDTSNEKNTIVFKLHVLCERGGPRLTVKTNELKWLPNGSELPLETKPDSNPSSKPRTYT 213
E T+ + V GP T + +L
Sbjct: 80 -----GEDETVTLSIDV----EGP-ATAYSGDL--------------------------- 102
Query: 214 SFSSSQDLL-PEFSNNPIRPMLDITIARLGPGQEIELEAHAVKGIGKTHAKWSPVATAWY 272
SS DL+ P N PI + D Q +E EA AV GK HAK Y
Sbjct: 103 --VSSDDLVQPADENVPIIDLKD--------DQRLEAEADAVLDYGKDHAKHQGGVAVGY 152
Query: 273 RMLPEIVLLEDV 284
R L + ++ D+
Sbjct: 153 RHLQRVEVVGDL 164
>gi|448474335|ref|ZP_21602194.1| DNA-directed RNA polymerase subunit D [Halorubrum aidingense JCM
13560]
gi|445817642|gb|EMA67511.1| DNA-directed RNA polymerase subunit D [Halorubrum aidingense JCM
13560]
Length = 250
Score = 59.7 bits (143), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 54/205 (26%), Positives = 84/205 (40%), Gaps = 52/205 (25%)
Query: 94 GIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRLGLIPIIVDPRLFEYMS 153
G+ A AN RR +IA++PT +I+ V N+SV+ DE++ RLGLIP+
Sbjct: 24 GLTPAFANGIRRAMIADVPTFSIDTVNFVENSSVMFDEMIGLRLGLIPL----------- 72
Query: 154 ENDTSNEKNTIVFKLHVLCERGGPRLTVKTNELKWLPNGSELPLETKPDSNPSSKPRTYT 213
T L G E+ L + ++ Y+
Sbjct: 73 -----------------------------TTPLDDFEIGDEVTLALDVEGPATA----YS 99
Query: 214 SFSSSQDLLPEFSNNPIRPMLDITIARLGPGQEIELEAHAVKGIGKTHAKWSPVATAWYR 273
S D L E +++ ++ I L GQ +E EA AV GK HAK + YR
Sbjct: 100 GDIESADPLVEVADD------NVPIIELKEGQRLEFEATAVLDSGKEHAKHQGGVSVGYR 153
Query: 274 MLPEIVLLEDVE--DEDAEKLVKTC 296
L + + D+ DED ++++
Sbjct: 154 HLQRVTVEGDLGEFDEDEPRILRGV 178
>gi|448378226|ref|ZP_21560700.1| DNA-directed RNA polymerase subunit D [Halovivax asiaticus JCM
14624]
gi|445654208|gb|ELZ07062.1| DNA-directed RNA polymerase subunit D [Halovivax asiaticus JCM
14624]
Length = 250
Score = 59.7 bits (143), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 58/213 (27%), Positives = 88/213 (41%), Gaps = 48/213 (22%)
Query: 72 FCNNFRVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDE 131
+++ VE + T+ + + GI A AN RR ++A++PT+AI+ V N+SV+ DE
Sbjct: 1 MASDYDVEFVERTEREARILVRGITPAFANGIRRAMVADVPTLAIDTVRFIENSSVMFDE 60
Query: 132 VLAHRLGLIPIIVDPRLFEYMSENDTSNEKNTIVFKLHVLCERGGPRLTVKTNELKWLPN 191
L RLGL+P+ P E+ ++ V L + E GP T + +L
Sbjct: 61 QLGLRLGLVPLTT-PTPEEFGDDD---------VVTLSIDVE--GP-ATAYSGDL----- 102
Query: 192 GSELPLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPMLDITIARLGPGQEIELEA 251
SS DL+ N + I +L Q +E EA
Sbjct: 103 -----------------------VSSEPDLVKPADEN-------VPIIQLKDDQRLEAEA 132
Query: 252 HAVKGIGKTHAKWSPVATAWYRMLPEIVLLEDV 284
AV GK HAK YR L + + D+
Sbjct: 133 EAVYDHGKNHAKHQGGVAVGYRHLQRVTVDGDL 165
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.319 0.135 0.405
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,801,168,450
Number of Sequences: 23463169
Number of extensions: 247182127
Number of successful extensions: 588267
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 1033
Number of HSP's successfully gapped in prelim test: 22
Number of HSP's that attempted gapping in prelim test: 585530
Number of HSP's gapped (non-prelim): 1490
length of query: 357
length of database: 8,064,228,071
effective HSP length: 143
effective length of query: 214
effective length of database: 9,003,962,200
effective search space: 1926847910800
effective search space used: 1926847910800
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 77 (34.3 bits)