Query 018378
Match_columns 357
No_of_seqs 262 out of 901
Neff 5.1
Searched_HMMs 29240
Date Mon Mar 25 14:19:38 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018378.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/018378hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2pa8_D DNA-directed RNA polyme 100.0 5.3E-63 1.8E-67 469.5 22.0 225 76-353 1-232 (265)
2 3h0g_C DNA-directed RNA polyme 100.0 5.9E-60 2E-64 455.9 5.7 222 75-354 4-236 (297)
3 1twf_C B44.5, DNA-directed RNA 100.0 1.8E-58 6.1E-63 449.7 10.8 222 74-353 4-234 (318)
4 2a6h_A DNA-directed RNA polyme 100.0 1.1E-40 3.8E-45 324.2 10.2 183 72-353 6-201 (315)
5 1bdf_A RNA polymerase alpha su 100.0 3.3E-40 1.1E-44 309.4 10.7 187 71-353 7-207 (235)
6 3lu0_A DNA-directed RNA polyme 100.0 8.1E-31 2.8E-35 256.1 7.7 157 68-276 4-189 (329)
7 2pa8_L DNA-directed RNA polyme 94.8 0.042 1.4E-06 44.1 5.5 37 76-113 1-37 (92)
8 1xpp_A TA1416, DNA-directed RN 94.3 0.058 2E-06 45.2 5.3 39 74-113 9-47 (115)
9 1jnr_B Adenylylsulfate reducta 91.8 0.12 4E-06 44.4 3.7 37 291-330 20-57 (150)
10 1twf_K B13.6, DNA-directed RNA 90.2 0.21 7.1E-06 42.0 3.6 39 74-113 17-55 (120)
11 3gyx_B Adenylylsulfate reducta 90.0 0.24 8.1E-06 43.2 3.9 37 291-330 19-56 (166)
12 3i9v_9 NADH-quinone oxidoreduc 83.8 0.78 2.7E-05 39.1 3.6 44 288-331 55-109 (182)
13 2gmh_A Electron transfer flavo 83.7 0.52 1.8E-05 48.3 2.8 54 276-330 502-563 (584)
14 1xer_A Ferredoxin; electron tr 83.2 1 3.5E-05 34.9 3.8 60 276-340 36-100 (103)
15 1jb0_C Photosystem I iron-sulf 82.7 0.99 3.4E-05 33.0 3.4 52 289-343 13-67 (80)
16 3h0g_K DNA-directed RNA polyme 80.7 0.83 2.8E-05 38.5 2.5 34 77-110 17-52 (123)
17 7fd1_A FD1, protein (7-Fe ferr 79.5 0.86 2.9E-05 35.9 2.2 37 289-331 11-50 (106)
18 1h98_A Ferredoxin; electron tr 78.8 0.97 3.3E-05 33.5 2.2 37 289-331 13-50 (78)
19 1dax_A Ferredoxin I; electron 77.7 1.2 4E-05 31.4 2.2 39 289-331 14-55 (64)
20 2fdn_A Ferredoxin; electron tr 76.4 1.1 3.7E-05 30.8 1.7 37 289-331 11-48 (55)
21 1dwl_A Ferredoxin I; electron 76.0 2.8 9.6E-05 28.4 3.8 38 289-331 12-52 (59)
22 3or1_B Sulfite reductase beta; 75.4 2 6.9E-05 42.2 3.9 41 290-331 225-269 (386)
23 2v2k_A Ferredoxin; iron, trans 74.4 1.3 4.4E-05 34.6 1.8 36 290-331 14-50 (105)
24 2fgo_A Ferredoxin; allochromat 74.0 1.4 4.8E-05 32.8 1.8 37 289-331 11-54 (82)
25 3mm5_A Sulfite reductase, diss 71.2 1.7 6E-05 43.4 2.3 37 289-331 260-297 (418)
26 3mm5_B Sulfite reductase, diss 70.5 2 6.9E-05 41.8 2.6 38 290-331 214-252 (366)
27 1rgv_A Ferredoxin; electron tr 69.7 1.3 4.4E-05 32.9 0.7 37 289-331 11-54 (80)
28 1f2g_A Ferredoxin II; electron 68.5 3.1 0.00011 28.4 2.5 38 289-331 11-51 (58)
29 3or1_A Sulfite reductase alpha 67.0 2.6 9E-05 42.5 2.6 36 290-331 278-314 (437)
30 1bc6_A 7-Fe ferredoxin; electr 66.9 1.5 5.3E-05 32.2 0.7 37 289-331 13-50 (77)
31 3eun_A Ferredoxin; electron tr 66.8 1.9 6.4E-05 32.2 1.2 44 289-341 11-61 (82)
32 1iqz_A Ferredoxin; iron-sulfer 64.7 5 0.00017 29.7 3.2 45 289-341 14-69 (81)
33 2zvs_A Uncharacterized ferredo 64.3 1.4 4.9E-05 33.1 0.1 37 289-331 11-54 (85)
34 1hfe_L Protein (Fe-only hydrog 56.0 1.5 5.3E-05 43.4 -1.4 49 277-331 27-77 (421)
35 2ivf_B Ethylbenzene dehydrogen 55.7 5.8 0.0002 38.7 2.7 16 289-304 187-202 (352)
36 1sj1_A Ferredoxin; thermostabi 52.6 9.7 0.00033 26.2 2.8 46 289-342 14-65 (66)
37 2c42_A Pyruvate-ferredoxin oxi 52.2 6.6 0.00023 44.3 2.7 57 287-344 689-767 (1231)
38 2vpz_B NRFC protein; oxidoredu 51.1 6.3 0.00021 34.8 1.9 68 262-343 67-145 (195)
39 1q16_B Respiratory nitrate red 50.7 7.1 0.00024 40.1 2.5 35 289-331 220-264 (512)
40 1kqf_B FDH-N beta S, formate d 47.7 8.8 0.0003 36.1 2.5 68 262-342 109-188 (294)
41 1gte_A Dihydropyrimidine dehyd 39.3 11 0.00037 41.3 1.9 60 276-344 944-1008(1025)
42 1ti6_B Pyrogallol hydroxytrans 37.8 19 0.00066 33.5 3.1 67 263-344 78-160 (274)
43 1ti6_B Pyrogallol hydroxytrans 35.6 16 0.00053 34.2 2.1 34 292-331 76-110 (274)
44 2ivf_B Ethylbenzene dehydrogen 35.4 19 0.00066 35.0 2.7 40 288-331 153-195 (352)
45 2vpz_B NRFC protein; oxidoredu 33.1 29 0.00099 30.4 3.3 36 291-331 65-101 (195)
46 1rof_A Ferredoxin; electron tr 32.3 7.7 0.00026 26.2 -0.5 38 289-331 13-52 (60)
47 3i9v_3 NADH-quinone oxidoreduc 30.6 17 0.00059 38.6 1.6 56 272-330 168-230 (783)
48 1h0h_B Formate dehydrogenase ( 27.9 52 0.0018 29.2 4.1 43 289-342 113-165 (214)
49 3j16_B RLI1P; ribosome recycli 24.8 47 0.0016 34.4 3.6 44 283-330 15-65 (608)
50 1kqf_B FDH-N beta S, formate d 23.0 39 0.0013 31.6 2.4 36 291-331 107-144 (294)
No 1
>2pa8_D DNA-directed RNA polymerase subunit D; ferredoxin-like Fe-S binding motif, platform for RNA polymer assembly, transferase; 1.76A {Sulfolobus solfataricus} PDB: 2pmz_D 3hkz_D 2waq_D 2wb1_D 2y0s_D
Probab=100.00 E-value=5.3e-63 Score=469.52 Aligned_cols=225 Identities=30% Similarity=0.534 Sum_probs=203.0
Q ss_pred ceEEEEEecCceEEEEEEcCChhHHHHHHHHHHhhCCcceEEEEEEeeCcccccchhheecccCcCceec--ccceeeec
Q 018378 76 FRVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRLGLIPIIVD--PRLFEYMS 153 (357)
Q Consensus 76 ~~I~i~~~~~~~~~F~l~Gvd~siaNALRRILisEVPT~AIe~V~I~~NTSvl~DEvLAHRLGLIPi~~D--~~~~~~~~ 153 (357)
|+|+|.++++++++|+|+|+|+||||||||||||||||+||+.|+|++|||||+||+|||||||||+..+ ++.|.|+.
T Consensus 1 ~~i~i~~~~~~~~~f~l~g~~~t~~NalRRills~vp~~AI~~V~i~~Ntsvl~DE~v~Hr~~~Ip~~~edv~k~~~~~~ 80 (265)
T 2pa8_D 1 MSINLLHKDDTRIDLVFEGYPLEFVNAIRRASMLYVPIMAVDDVYFIENNSPLYDEILAHRLALIPFMSEEALDTYRWPE 80 (265)
T ss_dssp -CEEEEEECSSEEEEEEESSCHHHHHHHHHHHHHSCCEEEEEEEEEEEECSSSCHHHHHHHHTTSCBCCTTHHHHSCCGG
T ss_pred CeEEEEEcCCCEEEEEEeCCCHHHHHHHHHHHHHcCccceEEEEEEEeCCCccccHHHHHhhcCCcCcccCchhhccccc
Confidence 4789999999999999999999999999999999999999999999999999999999999999999865 67888876
Q ss_pred cc---CCCCCCceEEEEEEEEeecCCCcceEEcccceecCCCCCCCCCCCCCCCCCCCCCcccccCCCCCCCCCCCCCCc
Q 018378 154 EN---DTSNEKNTIVFKLHVLCERGGPRLTVKTNELKWLPNGSELPLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPI 230 (357)
Q Consensus 154 ~~---~~~~~~~tv~f~L~V~c~~~~~~~~VyS~DL~~~p~g~q~~~~~~~~~~~~~~~~~~~~f~~~q~~~~~f~~~~v 230 (357)
+| +..|+.|+++|+|+++|+++ ++.|||+||++. ++++
T Consensus 81 ~~~~~~~~~~~~~~~~~l~~~~~~g--~~~V~a~Di~~~-------------------------------------~~~v 121 (265)
T 2pa8_D 81 ECIECTENCEKCYTKIYIEAEAPNE--PRMIYSKDIKSE-------------------------------------DPSV 121 (265)
T ss_dssp GCTTCCSSCTTTEEEEEEEEECCSS--CEEEEGGGCEES-------------------------------------STTC
T ss_pred cccccccCCCCcEEEEEEEEEecCC--CcEEEhhhcccC-------------------------------------CCCc
Confidence 53 45677899999999999543 589999999962 2347
Q ss_pred cccCC-eEEEEeCCCCEEEEEEEEEecccceeeeecceeeEEeeeeceEEEcCCCChHhHHHHHhhCCCceEEeeccCCC
Q 018378 231 RPMLD-ITIARLGPGQEIELEAHAVKGIGKTHAKWSPVATAWYRMLPEIVLLEDVEDEDAEKLVKTCPVNVFDIEDIGSG 309 (357)
Q Consensus 231 ~~v~~-IlIaKL~pGQeI~le~~a~KGiGk~HAKwSPVata~Yr~~P~I~i~~~i~~~~a~~l~~~cp~gV~~i~~~~~g 309 (357)
+|++| |+||||++||+|+|+|+|.||+||+|||||||++++||++|.|.++ ..|.+|++.||.|+|.+++
T Consensus 122 ~~~~~~i~I~~L~~g~~l~~e~~~~~G~G~~~ak~~pv~t~~yr~~p~I~i~-----~~C~~C~~~CP~g~I~id~---- 192 (265)
T 2pa8_D 122 VPISGDIPIVLLGTNQKISLEARLRLGYGKEHAKFIPVSLSVVRYYPKVEIL-----ANCEKAVNVCPEGVFELKD---- 192 (265)
T ss_dssp CBSCSCCEEEEECTTCEEEEEEEEEEECTTTCGGGCCEEEEEEEEEEEEEEC-----SCCTTHHHHCTTCCEEEET----
T ss_pred eecCCCcEEEEeCCCCEEEEEEEEecCccccccCcccceeeeeccccchhhh-----hhHHHHHHhCcccCeEecC----
Confidence 89999 9999999999999999999999999999999999999999999998 4477899999999999974
Q ss_pred ceEEEEccCCCCcchhhHHh-cCCCcCCcEEEEEeCCEEEEEEEE
Q 018378 310 KKRATVAQPRACTLCRECLR-CGEEWEKRVSIRRVKDHFICKYVM 353 (357)
Q Consensus 310 ~~~~~V~~~~~ct~crec~r-c~~~~~~~V~l~~~~dhFIF~Ve~ 353 (357)
+.+++.++++|++|++|++ |. ++|.+.++.|+|+|.||+
T Consensus 193 -~~~v~~d~~~C~~C~~C~~vCp----~aI~~~~~~d~~i~~VEt 232 (265)
T 2pa8_D 193 -GKLSVKNELSCTLCEECLRYCN----GSIRISFVEDKYILEIES 232 (265)
T ss_dssp -TEEEESCGGGCCCCCHHHHHHT----TSEEEEEEEEEEEEEEEE
T ss_pred -CeeEEeccccCCCchHHHHhCC----CceEEEecCCeEEEEecc
Confidence 2377889999999999999 52 589999999999999997
No 2
>3h0g_C DNA-directed RNA polymerase II subunit RPB3; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe}
Probab=100.00 E-value=5.9e-60 Score=455.91 Aligned_cols=222 Identities=29% Similarity=0.386 Sum_probs=180.1
Q ss_pred CceEEEEEecCceEEEEEEcCChhHHHHHHHHHHhhCCcceEEEEEEeeCcccccchhheecccCcCceec-c-----cc
Q 018378 75 NFRVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRLGLIPIIVD-P-----RL 148 (357)
Q Consensus 75 ~~~I~i~~~~~~~~~F~l~Gvd~siaNALRRILisEVPT~AIe~V~I~~NTSvl~DEvLAHRLGLIPi~~D-~-----~~ 148 (357)
.++|+|.++++++++|+|+|+|+|||||||||||||||||||+.|+|++|||||+||+|||||||||+..+ . +.
T Consensus 4 ~p~I~i~~~~~~~~~F~l~g~~~tiaNALRRiLLSeVPt~AI~~V~I~~NtSvl~DE~laHrlglIP~v~edv~e~~~~~ 83 (297)
T 3h0g_C 4 ETHITIRNISKNSVDFVLTNTSLAVANSLRRVVLAEIPTVAIDLVEINVNTSVMPDEFLAHRLGMIPLDSSNIDEPPPVG 83 (297)
T ss_dssp CCSBCCCCBCSSEEEEEECSCCHHHHHHHHHHHHSSCCEEEEEEEEEEEECSSSCHHHHHHHHHHSCBCCTTCSSCSSSC
T ss_pred CCeEEEEEccCCEEEEEEECCChhHHHHHHHHHHHcCccceEEEEEEEeCCccccccceeeeeccCCcccccccccccce
Confidence 57899999999999999999999999999999999999999999999999999999999999999999864 3 34
Q ss_pred eeeecccC--CCCCCceEEEEEEEEeecCCCcceEEcccceecCCCCCCCCCCCCCCCCCCCCCcccccCCCCCCCCCCC
Q 018378 149 FEYMSEND--TSNEKNTIVFKLHVLCERGGPRLTVKTNELKWLPNGSELPLETKPDSNPSSKPRTYTSFSSSQDLLPEFS 226 (357)
Q Consensus 149 ~~~~~~~~--~~~~~~tv~f~L~V~c~~~~~~~~VyS~DL~~~p~g~q~~~~~~~~~~~~~~~~~~~~f~~~q~~~~~f~ 226 (357)
|+|+..|. ..|+.|+++|+|+|+|+++. ++.|||+||+|.+ +.+ |.
T Consensus 84 l~~k~~c~~~~~~~~~~v~l~L~v~g~~~~-~~~Vta~Dl~~~~-~~~------------------------------~~ 131 (297)
T 3h0g_C 84 LEYTRNCDCDQYCPKCSVELFLNAKCTGEG-TMEIYARDLVVSS-NSS------------------------------LG 131 (297)
T ss_dssp CCCSSSCSSSSSCGGGSCEEEEEECCCCSS-CEEEEGGGCBCCS-CCS------------------------------SC
T ss_pred eEeccccccccCCCCceEEEEEEEEeccCC-CceEEcccccccC-ccc------------------------------cc
Confidence 88876544 56788999999999997654 6899999999953 110 00
Q ss_pred CCCc--cccCC-eEEEEeCCCCEEEEEEEEEecccceeeeecceeeEEeeeeceEEEcCCCChHhHHHHHhhCCCceEEe
Q 018378 227 NNPI--RPMLD-ITIARLGPGQEIELEAHAVKGIGKTHAKWSPVATAWYRMLPEIVLLEDVEDEDAEKLVKTCPVNVFDI 303 (357)
Q Consensus 227 ~~~v--~~v~~-IlIaKL~pGQeI~le~~a~KGiGk~HAKwSPVata~Yr~~P~I~i~~~i~~~~a~~l~~~cp~gV~~i 303 (357)
.++ .+++| |+||||+|||+|+|+|+|+||+||+|||||||++|+||++|+|+|.++..-. .+++++.||++++..
T Consensus 132 -~pv~~~~~n~di~IakL~~gq~l~le~~a~kG~G~~HAKwsPv~~~~y~~~P~i~l~~~~~~~-e~~~~~~~P~~~~~~ 209 (297)
T 3h0g_C 132 -HPILADPKSRGPLICKLRKEQEISLRCIAKKGIAKEHAKWSPTSAVAFEYDPWNKLQHTDYWF-ENDADAEWPKSKNAD 209 (297)
T ss_dssp -CBCCCSTTSCCSEEEEECSSCCEEEEEEEEEECGGGCTTSCCBCCCCCCSSSSCSSCCSCCCC-SSCSTTTSCCCGGGT
T ss_pred -ccccccCCCCCeEEEEECCCCEEEEEEEEECCEeccccccCcceEEEEEeccceEEccccccc-cchhHhhCCccccce
Confidence 011 24688 9999999999999999999999999999999999999999999998642100 014557899886532
Q ss_pred eccCCCceEEEEccCCCCcchhhHHhcCCCcCCcEEEEEeCCEEEEEEEEE
Q 018378 304 EDIGSGKKRATVAQPRACTLCRECLRCGEEWEKRVSIRRVKDHFICKYVML 354 (357)
Q Consensus 304 ~~~~~g~~~~~V~~~~~ct~crec~rc~~~~~~~V~l~~~~dhFIF~Ve~~ 354 (357)
. |..| +|+ ..+.+.+++|||||+|||.
T Consensus 210 ~-------------------~~~~-~~~----~~~~~~~~~dkfif~VET~ 236 (297)
T 3h0g_C 210 W-------------------EEPP-REG----EPFNFQEEPRRFYMDVESV 236 (297)
T ss_dssp T-------------------CCCC-SCC----SCCCSSCCCCCEEEEEEBC
T ss_pred e-------------------eccc-ccc----ccccccccCCEEEEEEEEc
Confidence 1 1011 112 2466789999999999973
No 3
>1twf_C B44.5, DNA-directed RNA polymerase II 45 kDa polypeptide; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: d.74.3.1 d.181.1.1 PDB: 1i3q_C 1i6h_C 1k83_C* 1nik_C 1nt9_C 1pqv_C 1r5u_C 1r9s_C* 1r9t_C* 1sfo_C* 1twa_C* 1twc_C* 1i50_C* 1twg_C* 1twh_C* 1wcm_C 1y1v_C 1y1w_C 1y1y_C 1y77_C* ...
Probab=100.00 E-value=1.8e-58 Score=449.73 Aligned_cols=222 Identities=31% Similarity=0.483 Sum_probs=183.1
Q ss_pred CCceEEEEEecCceEEEEEEcCChhHHHHHHHHHHhhCCcceEEEEEEeeCcccccchhheecccCcCce-ecccceeee
Q 018378 74 NNFRVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRLGLIPII-VDPRLFEYM 152 (357)
Q Consensus 74 ~~~~I~i~~~~~~~~~F~l~Gvd~siaNALRRILisEVPT~AIe~V~I~~NTSvl~DEvLAHRLGLIPi~-~D~~~~~~~ 152 (357)
++++|+|.++++++++|+|+|+++||||||||||||||||+||+.|+|++|||||+||+|||||||||+. +|++.|.|+
T Consensus 4 ~~p~I~i~~~~~~~~kF~leG~~~tlaNALRRiLLSevPg~AI~~V~I~~NTSvl~DE~vaHrlglIP~v~eDvk~l~~~ 83 (318)
T 1twf_C 4 EGPQVKIREASKDNVDFILSNVDLAMANSLRRVMIAEIPTLAIDSVEVETNTTVLADEFIAHRLGLIPLQSMDIEQLEYS 83 (318)
T ss_dssp CSSBCCCSCCCSSEECCEEBSSCHHHHHHHHHHHHHCCCEEEEEEEEEEEECSSSCHHHHHHHHHTSCEEETTGGGSCCT
T ss_pred cCCeEEEEEecCCEEEEEEEccChhHHHHHHHHHHHcCccceEEEEEEEeCCcccccceeEeecccCCCcccChhheEEe
Confidence 3467888899999999999999999999999999999999999999999999999999999999999999 589988888
Q ss_pred ccc--CCCCCCceEEEEEEEEeecCCCcceEEcccceecC--CCCCCCCCCCCCCCCCCCCCcccccCCCCCCCCCCCCC
Q 018378 153 SEN--DTSNEKNTIVFKLHVLCERGGPRLTVKTNELKWLP--NGSELPLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNN 228 (357)
Q Consensus 153 ~~~--~~~~~~~tv~f~L~V~c~~~~~~~~VyS~DL~~~p--~g~q~~~~~~~~~~~~~~~~~~~~f~~~q~~~~~f~~~ 228 (357)
.+| +..|+.|+++|+|+|+|++++ ++.|||+||+|.+ .|++ |.++
T Consensus 84 ~~~~~~~~c~~~~v~l~L~v~c~~~g-~~~Vta~Di~~~~~~~~~~------------------------------~~~p 132 (318)
T 1twf_C 84 RDCFCEDHCDKCSVVLTLQAFGESES-TTNVYSKDLVIVSNLMGRN------------------------------IGHP 132 (318)
T ss_dssp TTSSSSSCCTTTEEEEEEEEECCSSS-CEEEEGGGEEECSCCTTCS------------------------------EEEE
T ss_pred eccccccCCCCceEEEEEEEEecCCC-CeeEEhHhccccCcccccc------------------------------ccCC
Confidence 654 457889999999999998766 6899999999965 2211 1123
Q ss_pred Cc-cccCC-eEEEEeCCCCEEEEEEEEEecccceeeeecceeeEEeeeeceEEEcCCC--ChHhHHHHHhhCCCceEEee
Q 018378 229 PI-RPMLD-ITIARLGPGQEIELEAHAVKGIGKTHAKWSPVATAWYRMLPEIVLLEDV--EDEDAEKLVKTCPVNVFDIE 304 (357)
Q Consensus 229 ~v-~~v~~-IlIaKL~pGQeI~le~~a~KGiGk~HAKwSPVata~Yr~~P~I~i~~~i--~~~~a~~l~~~cp~gV~~i~ 304 (357)
.+ .+++| |+||||++||+|+|+|+|+||+||+|||||||++|+||++|.+++..++ ...++. ++||+.
T Consensus 133 ~v~ei~npdi~IakL~~gq~L~me~~a~kG~G~~hAk~sPva~~~y~~~P~~~~~~~~~~i~~D~~---~~f~pv----- 204 (318)
T 1twf_C 133 IIQDKEGNGVLICKLRKGQELKLTCVAKKGIAKEHAKWGPAAAIEFEYDPWNKLKHTDYWYEQDSA---KEWPQS----- 204 (318)
T ss_dssp CCCSTTSCCSEEEEECTTCEEEEEEEEEEECTTTCGGGCCEEEEEEEECSSTTSCCSCCCCSSCHH---HHSCCC-----
T ss_pred CccccCCCCeEEEEECCCCEEEEEEEEEcCcccccccccccccceecccccccccccccccccCch---hhCCCC-----
Confidence 35 37889 9999999999999999999999999999999999999999999876532 223332 367642
Q ss_pred ccCCCceEEEEccCCCCcchhhHHhcCCCcCCcEEEEEeCCEEEEEEEE
Q 018378 305 DIGSGKKRATVAQPRACTLCRECLRCGEEWEKRVSIRRVKDHFICKYVM 353 (357)
Q Consensus 305 ~~~~g~~~~~V~~~~~ct~crec~rc~~~~~~~V~l~~~~dhFIF~Ve~ 353 (357)
++|.++.++.. ...|..+.+.|||||+|||
T Consensus 205 --------------~~v~~~ve~~~-----~~rv~~~~d~dkfif~VET 234 (318)
T 1twf_C 205 --------------KNCEYEDPPNE-----GDPFDYKAQADTFYMNVES 234 (318)
T ss_dssp --------------GGGTTSCCCCS-----SSCCCTTCCCCCEEEEEEE
T ss_pred --------------cceeEEecccc-----cccccccccCCEEEEEEEe
Confidence 22444444321 2356777889999999998
No 4
>2a6h_A DNA-directed RNA polymerase alpha chain; RNA polymerase holoenzyme, streptolydigin, antibiotic, transcription regulation; HET: STD; 2.40A {Thermus thermophilus} SCOP: d.74.3.1 d.181.1.1 PDB: 1smy_A* 1zyr_A* 1iw7_A* 2a69_A* 2a6e_A 2a68_A* 2be5_A* 2cw0_A 2o5i_A 2o5j_A* 2ppb_A* 3aoh_A* 3aoi_A* 3dxj_A* 3eql_A* 1i6v_A* 1ynj_A* 1l9z_A 1l9u_A* 1ynn_A* ...
Probab=100.00 E-value=1.1e-40 Score=324.25 Aligned_cols=183 Identities=21% Similarity=0.262 Sum_probs=156.1
Q ss_pred ccCCceEEEEEecCceEEEEEE----cCChhHHHHHHHHHHhhCCcceEEEEEEeeCcccccchhheecccCcCcee-c-
Q 018378 72 FCNNFRVEVIRLTKDDMEFDLI----GIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRLGLIPIIV-D- 145 (357)
Q Consensus 72 f~~~~~I~i~~~~~~~~~F~l~----Gvd~siaNALRRILisEVPT~AIe~V~I~~NTSvl~DEvLAHRLGLIPi~~-D- 145 (357)
|.+ ++|++.+.++++++|.++ |+++++||||||+|||||||+||+.|+|++ ++||||+||+.. |
T Consensus 6 ~~~-p~i~i~~~~~~~~~F~l~Ple~G~~~TlgNaLRRiLLsevpg~AI~~V~I~~---------v~He~~~Ipgv~Edv 75 (315)
T 2a6h_A 6 LKA-PVFTVRTQGREYGEFVLEPLERGFGVTLGNPLRRILLSSIPGTAVTSVYIED---------VLHEFSTIPGVKEDV 75 (315)
T ss_dssp TSC-CEEEEEEETTTEEEEEEEEECTTCHHHHHHHHHHHHHHTCEEEEEEEEEESS---------CCSTTCBCTTBSSBH
T ss_pred ccC-CeEEEEEccCCEEEEEEEccCCCchhHHHHHHHHHHHhcCCceEEEEEEEec---------chhccCCCCCccCCH
Confidence 555 569999999999999996 999999999999999999999999999977 999999999985 7
Q ss_pred ------ccceeeecccCCCCCCceEEEEEEEEeecCCCcceEEcccceecCCCCCCCCCCCCCCCCCCCCCcccccCCCC
Q 018378 146 ------PRLFEYMSENDTSNEKNTIVFKLHVLCERGGPRLTVKTNELKWLPNGSELPLETKPDSNPSSKPRTYTSFSSSQ 219 (357)
Q Consensus 146 ------~~~~~~~~~~~~~~~~~tv~f~L~V~c~~~~~~~~VyS~DL~~~p~g~q~~~~~~~~~~~~~~~~~~~~f~~~q 219 (357)
.+.+.|+..| |+.|+++++|+++|+ +.|||+||+|.
T Consensus 76 ~eIilNlk~i~~~~~~---~~~~~~~~~L~v~gp-----~~VtA~Di~~~------------------------------ 117 (315)
T 2a6h_A 76 VEIILNLKELVVRFLN---PSLQTVTLLLKAEGP-----KEVKARDFLPV------------------------------ 117 (315)
T ss_dssp HHHHHHHHTCCEEECS---TTCSBCCEEEEEESS-----CEEEGGGSCCC------------------------------
T ss_pred HHHhhhhheEEEeccc---CCCCeEEEEEEEecC-----eeEEhhhCCcC------------------------------
Confidence 4667777654 346899999999973 79999999971
Q ss_pred CCCCCCCCCCccccCC-eEEEEeCCCCEEEEEEEEEecccceeeeecceeeEEeeeeceEEEcCCCChHhHHHHHhhCCC
Q 018378 220 DLLPEFSNNPIRPMLD-ITIARLGPGQEIELEAHAVKGIGKTHAKWSPVATAWYRMLPEIVLLEDVEDEDAEKLVKTCPV 298 (357)
Q Consensus 220 ~~~~~f~~~~v~~v~~-IlIaKL~pGQeI~le~~a~KGiGk~HAKwSPVata~Yr~~P~I~i~~~i~~~~a~~l~~~cp~ 298 (357)
+++.+++| |+||||++||+|+|+|+|.||+||+||||++ ++||.
T Consensus 118 --------~~v~ivnpd~~IatL~~g~~l~me~~~~kG~Gy~~ak~~~---------------------------~~~p~ 162 (315)
T 2a6h_A 118 --------ADVEIMNPDLHIATLEEGGRLNMEVRVDRGVGYVPAEKHG---------------------------IKDRI 162 (315)
T ss_dssp --------TTEEESCTTCEEEEBCSSCEEEEEEEEEEEESEECHHHHC---------------------------CCSST
T ss_pred --------CCcEEcCCCeEEEEECCCCEEEEEEEEEecCCccccccCc---------------------------ccCCc
Confidence 34889999 9999999999999999999999999999994 57999
Q ss_pred ceEEeeccCCCceEEEEccCCCCcchhhHHhcCCCcCCcEEEEEeCCEEEEEEEE
Q 018378 299 NVFDIEDIGSGKKRATVAQPRACTLCRECLRCGEEWEKRVSIRRVKDHFICKYVM 353 (357)
Q Consensus 299 gV~~i~~~~~g~~~~~V~~~~~ct~crec~rc~~~~~~~V~l~~~~dhFIF~Ve~ 353 (357)
|+|.++.. -...++|+++.|+.| |..+.+.|||+|+|||
T Consensus 163 g~i~iDa~--------f~pv~~v~y~ve~~r--------v~~~~~~dkli~eIeT 201 (315)
T 2a6h_A 163 NAIPVDAV--------FSPVRRVAFQVEDTR--------LGQRTDLDKLTLRIWT 201 (315)
T ss_dssp TCEECCEE--------CCCEEEEEEEEEECC--------BTTBCCCEEEEEEEEE
T ss_pred ceEeecCC--------CCCceeEEEEeeeee--------ecccccccEEEEEEEE
Confidence 99999742 233467888877765 2234578999999998
No 5
>1bdf_A RNA polymerase alpha subunit; nucleotidyltransferase, assemble; 2.50A {Escherichia coli} SCOP: d.74.3.1 d.181.1.1
Probab=100.00 E-value=3.3e-40 Score=309.36 Aligned_cols=187 Identities=18% Similarity=0.239 Sum_probs=150.6
Q ss_pred hccCCceEEEEEecCceEEEEEE----cCChhHHHHHHHHHHhhCCcceEEEEEEeeCcccccchhheecccCcCcee-c
Q 018378 71 HFCNNFRVEVIRLTKDDMEFDLI----GIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRLGLIPIIV-D 145 (357)
Q Consensus 71 ~f~~~~~I~i~~~~~~~~~F~l~----Gvd~siaNALRRILisEVPT~AIe~V~I~~NTSvl~DEvLAHRLGLIPi~~-D 145 (357)
+|.++.+|++.+.++++++|.|+ |+++++||||||+|||||||+||+.|+| |+++||||+||+.. |
T Consensus 7 ~~~~p~~i~i~~~~~~~~~F~l~Ple~G~~~tlgNaLRRiLLsevpg~AI~~V~I---------e~v~He~~~Ipgv~Ed 77 (235)
T 1bdf_A 7 EFLKPRLVDIEQVSSTHAKVTLEPLERGFGHTLGNALRAILLSSMPGCAVTEVEI---------DGVLHEYSTKEGVQED 77 (235)
T ss_dssp CSCCCCEEEEEESSSSEEEEEEEEEETTHHHHHHHHHHHHHTTSCCCEEEEEEEE---------TTCCSTTCCCTTBSSC
T ss_pred hhcCCceEEEEEccCCEEEEEEEecCCCCchHHHHHHHHHHHhcCCceEEEEEEE---------cceeeccccCCCccCC
Confidence 79998889999999999999997 9999999999999999999999999999 67999999999985 7
Q ss_pred -------ccceeeecccCCCCCCceEEEEEEEEeecCCCcceEEcccceecCCCCCCCCCCCCCCCCCCCCCcccccCCC
Q 018378 146 -------PRLFEYMSENDTSNEKNTIVFKLHVLCERGGPRLTVKTNELKWLPNGSELPLETKPDSNPSSKPRTYTSFSSS 218 (357)
Q Consensus 146 -------~~~~~~~~~~~~~~~~~tv~f~L~V~c~~~~~~~~VyS~DL~~~p~g~q~~~~~~~~~~~~~~~~~~~~f~~~ 218 (357)
++.+.|+..+ .|++.++|+++| ++.|||+||+.
T Consensus 78 v~~iilNlk~i~~~~~~-----~~~~~~~L~v~g-----p~~VtA~Di~~------------------------------ 117 (235)
T 1bdf_A 78 ILEILLNLKGLAVRVQG-----KDEVILTLNKSG-----IGPVTAADITH------------------------------ 117 (235)
T ss_dssp HHHHHHHHHTCCEECSS-----CSEEEEEEEEES-----SEEEEGGGBCC------------------------------
T ss_pred HHHHhhchheeEEeccC-----CceEEEEEEEec-----CeEEEhHhCCC------------------------------
Confidence 4566666442 589999999997 38999999984
Q ss_pred CCCCCCCCCCCccccCC-eEEEEeCC-CCEEEEEEEEEecccceeeeecceeeEEeeeeceEEEcCCCChHhHHHHHhhC
Q 018378 219 QDLLPEFSNNPIRPMLD-ITIARLGP-GQEIELEAHAVKGIGKTHAKWSPVATAWYRMLPEIVLLEDVEDEDAEKLVKTC 296 (357)
Q Consensus 219 q~~~~~f~~~~v~~v~~-IlIaKL~p-GQeI~le~~a~KGiGk~HAKwSPVata~Yr~~P~I~i~~~i~~~~a~~l~~~c 296 (357)
++++++++| ++||||++ ||+|+|+|+|.||+||+||||| +. ++ .++|
T Consensus 118 --------~~~v~ivnpd~~IatL~~~g~~l~~e~~~~kG~Gy~~ak~s------------i~-~~----------~~~~ 166 (235)
T 1bdf_A 118 --------DGDVEIVKPQHVICHLTDENASISMRIKVQRGRGYVPASTR------------IH-SE----------EDER 166 (235)
T ss_dssp --------CSSCEESCTTCEEEEECSTTCEEEEEEEEEECCSEECGGGT------------C----------------CC
T ss_pred --------CCCCEEcCCCeEEEEECCCCCEEEEEEEEEecccceecccc------------cc-cc----------cccC
Confidence 134789999 99999999 9999999999999999999998 00 10 2689
Q ss_pred CCceEEeeccCCCceEEEEccCCCCcchhhHHhcCCCcCCcEEEEEeCCEEEEEEEE
Q 018378 297 PVNVFDIEDIGSGKKRATVAQPRACTLCRECLRCGEEWEKRVSIRRVKDHFICKYVM 353 (357)
Q Consensus 297 p~gV~~i~~~~~g~~~~~V~~~~~ct~crec~rc~~~~~~~V~l~~~~dhFIF~Ve~ 353 (357)
|.|+|.++..- .|- .|.|.+ .+. ..|..+.+.|||+|+|||
T Consensus 167 ~~g~i~iD~~f---------~pv----~~v~y~-ve~--~~v~~~~~~d~li~eIeT 207 (235)
T 1bdf_A 167 PIGRLLVDACY---------SPV----ERIAYN-VEA--ARVEQRTDLDKLVIEMET 207 (235)
T ss_dssp CCSCCBCCEEC---------CSE----EEEEEE-CCB--CCCSSCSSEEEEEEEEEE
T ss_pred CCcEEEECCCC---------CcE----EEEEEE-ccC--ccccccccCcEEEEEEEe
Confidence 99999886421 111 011211 111 245556678999999998
No 6
>3lu0_A DNA-directed RNA polymerase subunit alpha; E. coli RNA polymerase, nucleotidyltransferase, transcription, transferase; 11.20A {Escherichia coli} PDB: 3iyd_A
Probab=99.96 E-value=8.1e-31 Score=256.06 Aligned_cols=157 Identities=19% Similarity=0.283 Sum_probs=131.9
Q ss_pred chhhccCCceEEEEEecCceEEEEEE----cCChhHHHHHHHHHHhhCCcceEEEEEEeeCcccccchhheecccCcCce
Q 018378 68 QLDHFCNNFRVEVIRLTKDDMEFDLI----GIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRLGLIPII 143 (357)
Q Consensus 68 ~~~~f~~~~~I~i~~~~~~~~~F~l~----Gvd~siaNALRRILisEVPT~AIe~V~I~~NTSvl~DEvLAHRLGLIPi~ 143 (357)
++.+|.++..+++.+.++.+++|.++ |++.++||||||+|||+|||+||+.|+|.+ ++||||+||+.
T Consensus 4 ~~~~~~~p~~~~v~~~~~~~~kF~l~PlerG~g~TlgNaLRRvLLssvpg~AIt~V~I~g---------v~Hefs~Ipgv 74 (329)
T 3lu0_A 4 SVTEFLKPRLVDIEQVSSTHAKVTLEPLERGFGHTLGNALRRILLSSMPGCAVTEVEIDG---------VLHEYSTKEGV 74 (329)
T ss_dssp STTTSSSCCCCCEEECTTSEEEEEECCCCTTCHHHHHHHHHHHTTTSSCEEEEEEEEESS---------CSSTTCCCTTB
T ss_pred hhhhccCCceEEEEEcCCCEEEEEEEecCCCChhHHHHHHHHHHHhcCCceEEEEEEEeC---------ccccccccccc
Confidence 45579999899999999999999999 999999999999999999999999999955 89999999976
Q ss_pred -ecc-c-ceeeecccCCCCCCceEEEEEEEEeecCCCcceEEcccceecCCCCCCCCCCCCCCCCCCCCCcccccCCCCC
Q 018378 144 -VDP-R-LFEYMSENDTSNEKNTIVFKLHVLCERGGPRLTVKTNELKWLPNGSELPLETKPDSNPSSKPRTYTSFSSSQD 220 (357)
Q Consensus 144 -~D~-~-~~~~~~~~~~~~~~~tv~f~L~V~c~~~~~~~~VyS~DL~~~p~g~q~~~~~~~~~~~~~~~~~~~~f~~~q~ 220 (357)
+|. + .++.+.-.-..+..|++.++|++++ ++.|||+||++ |
T Consensus 75 ~Edv~eiilNlK~i~~k~~~~~~~~~~L~~~G-----p~~VtA~DI~~-~------------------------------ 118 (329)
T 3lu0_A 75 QEDILEILLNLKGLAVRVQGKDEVILTLNKSG-----IGPVTAADITH-D------------------------------ 118 (329)
T ss_dssp SSCHHHHHHHHHSCCCEESSCSCEEEEECCCS-----SSCEETTSSCC-C------------------------------
T ss_pred cCCHHHHHhhhccceEecCCCceEEEEEEEeC-----CeEEEeeeecc-C------------------------------
Confidence 554 2 2233321111234678999999875 47999999987 2
Q ss_pred CCCCCCCCCccccCC-eEEEEeC-CCCEEEEEEEEEeccccee--------------------eeecceeeEEeeeec
Q 018378 221 LLPEFSNNPIRPMLD-ITIARLG-PGQEIELEAHAVKGIGKTH--------------------AKWSPVATAWYRMLP 276 (357)
Q Consensus 221 ~~~~f~~~~v~~v~~-IlIaKL~-pGQeI~le~~a~KGiGk~H--------------------AKwSPVata~Yr~~P 276 (357)
+.+++++| ++||+|+ +||+|+|+++|.||+||.+ |.||||..|.|.+++
T Consensus 119 -------~~veivnpd~~IatL~~~~~~L~me~~i~~G~GY~~a~~~~~~~~~~~~ig~i~iDa~fsPV~~Vny~Ve~ 189 (329)
T 3lu0_A 119 -------GDVEIVKPQHVICHLTDENASISMRIKVQRGRGYVPASTRIHSEEDERPIGRLLVDACYSPVERIAYNVEA 189 (329)
T ss_dssp -------SSEECSCTTCEEECBCSSCCCCCEEEEEEEESSEECTTTSCCCSTTSSSCCCEECCEECCCEEEEEEEEEE
T ss_pred -------CCCEEeCCCcEEEEEccCCcEEEEEEEEECcccceechhccccccccCcCceEeeCCCCCceeeEEEEEec
Confidence 23789999 9999999 9999999999999999975 459999999998875
No 7
>2pa8_L DNA-directed RNA polymerase subunit L; ferredoxin-like Fe-S binding motif, platform for RNA polymer assembly, transferase; 1.76A {Sulfolobus solfataricus} PDB: 2pmz_L 3hkz_L 2waq_L 2wb1_L 2y0s_L
Probab=94.82 E-value=0.042 Score=44.12 Aligned_cols=37 Identities=14% Similarity=0.302 Sum_probs=33.2
Q ss_pred ceEEEEEecCceEEEEEEcCChhHHHHHHHHHHhhCCc
Q 018378 76 FRVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPT 113 (357)
Q Consensus 76 ~~I~i~~~~~~~~~F~l~Gvd~siaNALRRILisEVPT 113 (357)
++|+|.+.+++.++|.+.|=|.++||+||-.|+.. |.
T Consensus 1 Meikvi~k~~n~~~f~i~~EDHTLgN~Lr~~L~~~-p~ 37 (92)
T 2pa8_L 1 MEIRILKSESNYLELEIEGEDHTLGNLIAGTLRRI-SG 37 (92)
T ss_dssp CEEEEEEEETTEEEEEEETCCHHHHHHHHHHHHTS-TT
T ss_pred CceEEEecCCCeEEEEEecCchhHHHHHHHHHhcC-CC
Confidence 46899999999999999999999999999998764 65
No 8
>1xpp_A TA1416, DNA-directed RNA polymerase subunit L; structural genomics, protein structure initiative, MCSG; 1.60A {Thermoplasma acidophilum} SCOP: d.74.3.2
Probab=94.27 E-value=0.058 Score=45.19 Aligned_cols=39 Identities=13% Similarity=0.299 Sum_probs=34.6
Q ss_pred CCceEEEEEecCceEEEEEEcCChhHHHHHHHHHHhhCCc
Q 018378 74 NNFRVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPT 113 (357)
Q Consensus 74 ~~~~I~i~~~~~~~~~F~l~Gvd~siaNALRRILisEVPT 113 (357)
+++++++...+++.+.|.+.|=|.+|+|+||-.|+.. |.
T Consensus 9 ~kmeiki~~k~~n~~~f~i~~EDHTLgNlLr~~Llkd-p~ 47 (115)
T 1xpp_A 9 AESSLRVISKEKNSITVEMINYDNTLLRTLVEEILKD-DQ 47 (115)
T ss_dssp CCCEEEEEEECSSEEEEEEESCCHHHHHHHHHHHTTC-TT
T ss_pred cceEEEEEcCCCCEEEEEEeCCCchhHHHHHHHHhcC-CC
Confidence 3588999999999999999999999999999997765 55
No 9
>1jnr_B Adenylylsulfate reductase; oxidoreductase; HET: FAD; 1.60A {Archaeoglobus fulgidus dsm 4304} SCOP: d.58.1.5 PDB: 1jnz_B* 2fja_B* 2fjb_B* 2fjd_B* 2fje_B*
Probab=91.84 E-value=0.12 Score=44.36 Aligned_cols=37 Identities=22% Similarity=0.614 Sum_probs=30.9
Q ss_pred HHHhhCCCceEEeeccCCCceEEEEccCCCCcchhhHHh-c
Q 018378 291 KLVKTCPVNVFDIEDIGSGKKRATVAQPRACTLCRECLR-C 330 (357)
Q Consensus 291 ~l~~~cp~gV~~i~~~~~g~~~~~V~~~~~ct~crec~r-c 330 (357)
.+++.||.++|.+++.+ .++.+.++..|+.|..|+. |
T Consensus 20 ~C~~~CP~~ai~~~~~~---~~~~~id~~~C~~Cg~Cv~~C 57 (150)
T 1jnr_B 20 ACEYICPNDLMTLDKEK---MKAYNREPDMCWECYSCVKMC 57 (150)
T ss_dssp HHHHHCTTSCEEEETTT---TEEEESCGGGCCCCCHHHHHC
T ss_pred cchhhcCccCeEEecCC---ceeeeeCcccCcCHhHHHHhC
Confidence 89999999999987532 3566778899999999998 7
No 10
>1twf_K B13.6, DNA-directed RNA polymerase II 13.6 kDa polypepti; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: d.74.3.2 PDB: 1i3q_K 1i6h_K 1k83_K* 1nik_K 1nt9_K 1pqv_K 1r5u_K 1r9s_K* 1r9t_K* 1sfo_K* 1twa_K* 1twc_K* 1i50_K* 1twg_K* 1twh_K* 1wcm_K 1y1v_K 1y1w_K 1y1y_K 1y77_K* ...
Probab=90.25 E-value=0.21 Score=42.01 Aligned_cols=39 Identities=10% Similarity=0.204 Sum_probs=32.0
Q ss_pred CCceEEEEEecCceEEEEEEcCChhHHHHHHHHHHhhCCc
Q 018378 74 NNFRVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPT 113 (357)
Q Consensus 74 ~~~~I~i~~~~~~~~~F~l~Gvd~siaNALRRILisEVPT 113 (357)
+++++++....++.++|.+.|=|.++||+||-.|+.. |.
T Consensus 17 ~K~~~~~~~k~~n~~~f~i~~EDHTLgNlLr~~Llk~-p~ 55 (120)
T 1twf_K 17 SKLKIDPDTKAPNAVVITFEKEDHTLGNLIRAELLND-RK 55 (120)
T ss_dssp CSCCEEECSSSTTEEEEEEESCCHHHHHHHHHHHTTC-TT
T ss_pred ceEEEEeccCCCCeEEEEEeCCCchHHHHHHHHHhhC-CC
Confidence 3466666666789999999999999999999997763 54
No 11
>3gyx_B Adenylylsulfate reductase; oxidoreductase; HET: FAD; 3.20A {Desulfovibrio gigas}
Probab=89.99 E-value=0.24 Score=43.17 Aligned_cols=37 Identities=24% Similarity=0.647 Sum_probs=31.1
Q ss_pred HHHhhCCCceEEeeccCCCceEEEEccCCCCcchhhHHh-c
Q 018378 291 KLVKTCPVNVFDIEDIGSGKKRATVAQPRACTLCRECLR-C 330 (357)
Q Consensus 291 ~l~~~cp~gV~~i~~~~~g~~~~~V~~~~~ct~crec~r-c 330 (357)
.+++.||.++|.+++.+ ..+.+.++..|+.|..|+. |
T Consensus 19 ~C~~~CP~~ai~~~~~~---~~~~~~d~~~C~~Cg~Cv~~C 56 (166)
T 3gyx_B 19 ACMYICPNDLMILDPEE---MKAFNQEPEACWECYSCIKIC 56 (166)
T ss_dssp HHHHHCTTSCEEEETTT---TEEEESCGGGCCCCCHHHHHC
T ss_pred hhHHhCCccccEEecCC---ceeEecCcccCcccChHhHhC
Confidence 89999999999997532 4566778899999999998 7
No 12
>3i9v_9 NADH-quinone oxidoreductase subunit 9; electron transport, respiratory chain, cell flavoprotein, FMN, iron, iron-sulfur, membrane; HET: FMN; 3.10A {Thermus thermophilus} PDB: 2ybb_8* 2fug_9* 3iam_9* 3ias_9* 3m9s_9*
Probab=83.81 E-value=0.78 Score=39.08 Aligned_cols=44 Identities=16% Similarity=0.370 Sum_probs=31.7
Q ss_pred hHHHHHhhCCCceEEeeccCC----------CceEEEEccCCCCcchhhHHh-cC
Q 018378 288 DAEKLVKTCPVNVFDIEDIGS----------GKKRATVAQPRACTLCRECLR-CG 331 (357)
Q Consensus 288 ~a~~l~~~cp~gV~~i~~~~~----------g~~~~~V~~~~~ct~crec~r-c~ 331 (357)
.|..|+..||.+++.+..... ........+...|+.|..|+. |.
T Consensus 55 ~C~~C~~~CP~~ai~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~C~~C~~~CP 109 (182)
T 3i9v_9 55 GCSLCAAACPAYAIYVEPAENDPENPVSAGERYAKVYEINMLRCIFCGLCEEACP 109 (182)
T ss_dssp CCCHHHHHCTTCCEEEEEECCCSSSCSSSSSCEEEEEEEETTTCCCCCHHHHHCS
T ss_pred ccccchhhCCcccEEeecccccccccccccccccceeecCCCcCcChhChhhhCC
Confidence 367899999999998754210 112344567889999999998 74
No 13
>2gmh_A Electron transfer flavoprotein-ubiquinone oxidoreductase; HET: BHG FAD UQ5; 2.50A {Sus scrofa} SCOP: c.3.1.2 d.16.1.8 d.58.1.6 PDB: 2gmj_A*
Probab=83.66 E-value=0.52 Score=48.33 Aligned_cols=54 Identities=17% Similarity=0.306 Sum_probs=36.1
Q ss_pred ceEEEcCCCCh------HhHHHHHhhCCCceEEe-eccCCCceEEEEccCCCCcchhhHHh-c
Q 018378 276 PEIVLLEDVED------EDAEKLVKTCPVNVFDI-EDIGSGKKRATVAQPRACTLCRECLR-C 330 (357)
Q Consensus 276 P~I~i~~~i~~------~~a~~l~~~cp~gV~~i-~~~~~g~~~~~V~~~~~ct~crec~r-c 330 (357)
++|+|..+-.. ..+..|+..||.|||.+ ++. +|.....+.|+.+|.-|..|.. |
T Consensus 502 ~hl~~~d~~~~~~~~~~~~~~~c~~~CPa~~~~~~~~~-~~~~~~~~i~~~~Ci~C~~C~~~c 563 (584)
T 2gmh_A 502 AHLTLKDDSVPVNRNLSIYDGPEQRFCPAGVYEFVPLE-QGDGFRLQINAQNCVHCKTCDIKD 563 (584)
T ss_dssp CSEEESSTTHHHHTHHHHHCCTHHHHCTTCCEEEEECS-STTCEEEEECGGGCCCCCHHHHHC
T ss_pred CeEEEcCcccchhhchhhhcchhhhcCChhhEEEeecC-CCCceEEEEeCCCCcCCCCchhhC
Confidence 57887543111 22345888999999988 422 2222235668899999999987 6
No 14
>1xer_A Ferredoxin; electron transport, iron-sulfur, duplication; 2.00A {Sulfolobus tokodaii str} SCOP: d.58.1.3 PDB: 2vkr_A
Probab=83.17 E-value=1 Score=34.88 Aligned_cols=60 Identities=23% Similarity=0.470 Sum_probs=39.2
Q ss_pred ceEEEcC-CCChHhHHHHHhhCCCceEEeeccCC---CceEEEEccCCCCcchhhHHh-cCCCcCCcEEE
Q 018378 276 PEIVLLE-DVEDEDAEKLVKTCPVNVFDIEDIGS---GKKRATVAQPRACTLCRECLR-CGEEWEKRVSI 340 (357)
Q Consensus 276 P~I~i~~-~i~~~~a~~l~~~cp~gV~~i~~~~~---g~~~~~V~~~~~ct~crec~r-c~~~~~~~V~l 340 (357)
+.+.++. ... .+..+++.||.++|.+.+..+ +.......+...|+.|..|+. |.. ++|++
T Consensus 36 ~~~~id~~~C~--~Cg~C~~~CP~~ai~~~~~~~~~~~~~~~~~~~~~~C~~Cg~C~~~CP~---~Ai~~ 100 (103)
T 1xer_A 36 TIVGVDFDLCI--ADGSCINACPVNVFQWYDTPGHPASEKKADPVNEQACIFCMACVNVCPV---AAIDV 100 (103)
T ss_dssp SSEEEETTTCC--CCCHHHHHCTTCCCEEEECTTCSSCSEEEECTTGGGCCCCCHHHHHCTT---CCEEE
T ss_pred ceEEEehhhCC--ChhhHHHHcCccCeecccccCccccccceeecCcccccChhhHHHhccc---cceEe
Confidence 3455553 343 367899999999998864311 112345568889999999998 743 35554
No 15
>1jb0_C Photosystem I iron-sulfur center; membrane protein, multiprotein-pigment complex, photosynthes; HET: CL1 PQN BCR LHG LMG; 2.50A {Synechococcus elongatus} SCOP: d.58.1.2 PDB: 3pcq_C* 1k0t_A 2wsc_C* 2wse_C* 2wsf_C* 3lw5_C* 2o01_C*
Probab=82.66 E-value=0.99 Score=33.02 Aligned_cols=52 Identities=21% Similarity=0.524 Sum_probs=34.2
Q ss_pred HHHHHhhCCCceEEeeccCCC-ceEE-EEccCCCCcchhhHHh-cCCCcCCcEEEEEe
Q 018378 289 AEKLVKTCPVNVFDIEDIGSG-KKRA-TVAQPRACTLCRECLR-CGEEWEKRVSIRRV 343 (357)
Q Consensus 289 a~~l~~~cp~gV~~i~~~~~g-~~~~-~V~~~~~ct~crec~r-c~~~~~~~V~l~~~ 343 (357)
+..+++.||.++|.+++.++. ...+ ...++..|+.|..|.. |.. +.+.+...
T Consensus 13 Cg~C~~~CP~~a~~~~~~~~~~~~~~~~~~~~~~C~~Cg~C~~~CP~---~ai~~~~~ 67 (80)
T 1jb0_C 13 CTQCVRACPTDVLEMVPWDGCKAGQIASSPRTEDCVGCKRCETACPT---DFLSIRVY 67 (80)
T ss_dssp CCHHHHHCTTCCCEEEECSSSTTSEEEECTTGGGCCCCCHHHHHCCS---SSCSEEEE
T ss_pred hhHHHHHCCcccccccccccccccccccCCCCCcCcCcCChhhhCCC---CccEeeee
Confidence 568999999999988652211 1222 2346788999999998 642 24555443
No 16
>3h0g_K DNA-directed RNA polymerase II subunit RPB11; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe}
Probab=80.73 E-value=0.83 Score=38.54 Aligned_cols=34 Identities=18% Similarity=0.187 Sum_probs=27.8
Q ss_pred eEEEEE--ecCceEEEEEEcCChhHHHHHHHHHHhh
Q 018378 77 RVEVIR--LTKDDMEFDLIGIDAAIANAFRRILIAE 110 (357)
Q Consensus 77 ~I~i~~--~~~~~~~F~l~Gvd~siaNALRRILisE 110 (357)
||++.. ..++.+.|.+.|=|.++||+||-.|+..
T Consensus 17 Kv~~~~dtk~~n~~~f~i~~EDHTLgNlLr~~Llk~ 52 (123)
T 3h0g_K 17 KVTYELDSKSPNAAVVTLEKEDHTLANMLANQLLSD 52 (123)
T ss_dssp SCCEEECSSSTTEEEEEEESCCSSHHHHHHHTGGGS
T ss_pred ceEEecCCCCCceEEEEEeCCCcchHHHHHHHHhcC
Confidence 455554 4578999999999999999999987653
No 17
>7fd1_A FD1, protein (7-Fe ferredoxin I); electron transport, iron-sulfur; 1.30A {Azotobacter vinelandii} SCOP: d.58.1.2 PDB: 1fda_A 1fdb_A 1fer_A 1axq_A 5fd1_A 6fdr_A 6fd1_A 7fdr_A 1frh_A 1fri_A 1fdd_A 1frl_A 1d3w_A 1frm_A 1frx_A 1g6b_A 1pc4_A 1frj_A 2fd2_A 1fd2_A ...
Probab=79.50 E-value=0.86 Score=35.88 Aligned_cols=37 Identities=30% Similarity=0.633 Sum_probs=28.7
Q ss_pred HH--HHHhhCCCceEEeeccCCCceEEEEccCCCCcchhhHHh-cC
Q 018378 289 AE--KLVKTCPVNVFDIEDIGSGKKRATVAQPRACTLCRECLR-CG 331 (357)
Q Consensus 289 a~--~l~~~cp~gV~~i~~~~~g~~~~~V~~~~~ct~crec~r-c~ 331 (357)
+. .+++.||.++|.+++ +.+ +.++..|+.|..|+. |.
T Consensus 11 C~~~~C~~~CP~~ai~~~~-----~~~-~i~~~~C~~Cg~C~~~CP 50 (106)
T 7fd1_A 11 CKYTDCVEVCPVDCFYEGP-----NFL-VIHPDECIDCALCEPECP 50 (106)
T ss_dssp TCCCHHHHHCTTCCEEECS-----SCE-EECTTTCCCCCTTGGGCT
T ss_pred ccCcHHHHHcCccceEcCC-----CcE-EECcccCCChhhhHHhCC
Confidence 55 788999999998863 223 347788999999998 63
No 18
>1h98_A Ferredoxin; electron transport, thermophilic, iron-sulfur, azotobacter, hydrogen bonds, stability, high resolution; 1.64A {Thermus aquaticus} SCOP: d.58.1.2
Probab=78.83 E-value=0.97 Score=33.46 Aligned_cols=37 Identities=24% Similarity=0.617 Sum_probs=28.9
Q ss_pred HHHHHhhCCCceEEeeccCCCceEEEEccCCCCcchhhHHh-cC
Q 018378 289 AEKLVKTCPVNVFDIEDIGSGKKRATVAQPRACTLCRECLR-CG 331 (357)
Q Consensus 289 a~~l~~~cp~gV~~i~~~~~g~~~~~V~~~~~ct~crec~r-c~ 331 (357)
+..+++.||.++|.+++ +.+ +.++..|+.|..|+. |.
T Consensus 13 C~~C~~~CP~~ai~~~~-----~~~-~~~~~~C~~C~~C~~~CP 50 (78)
T 1h98_A 13 DQSCVEVCPVECIYDGG-----DQF-YIHPEECIDCGACVPACP 50 (78)
T ss_dssp CCHHHHHCTTCCEEECS-----SSE-EECTTTCCCCCTHHHHCT
T ss_pred cChhhhhcCccceEcCC-----CEE-EECcccCCcHhHHHHhCC
Confidence 45788999999999863 123 347889999999998 64
No 19
>1dax_A Ferredoxin I; electron transport, electron-transfer protein, 4Fe-4S cluster; NMR {Desulfovibrio africanus} SCOP: d.58.1.4 PDB: 1dfd_A 1fxr_A
Probab=77.74 E-value=1.2 Score=31.40 Aligned_cols=39 Identities=21% Similarity=0.327 Sum_probs=28.8
Q ss_pred HHHHHhhCCCceEEeeccCCCceEEEEcc--CCCCcchhhHHh-cC
Q 018378 289 AEKLVKTCPVNVFDIEDIGSGKKRATVAQ--PRACTLCRECLR-CG 331 (357)
Q Consensus 289 a~~l~~~cp~gV~~i~~~~~g~~~~~V~~--~~~ct~crec~r-c~ 331 (357)
+..+++.|| ++|.+++.. +.+.+.+ +..|+.|+.|++ |.
T Consensus 14 Cg~C~~~CP-~~~~~~~~~---~~~~~~~~~~~~C~~C~~C~~~CP 55 (64)
T 1dax_A 14 CESCVEIAP-GAFAMDPEI---EKAYVKDVEGASQEEVEEAMDTCP 55 (64)
T ss_dssp CCHHHHHCT-TTEEECSSS---SSEEECCGGGSCHHHHHHHHHHSS
T ss_pred chHHHHhCC-ccEeEcCCC---CEEEEecCCCcchhHHHHHHHhCC
Confidence 667899999 999886421 2345544 688999999998 64
No 20
>2fdn_A Ferredoxin; electron transport, iron-sulfur, 4Fe-4S; 0.94A {Clostridium acidurici} SCOP: d.58.1.1 PDB: 1fdn_A 1fca_A 1clf_A 1dur_A
Probab=76.37 E-value=1.1 Score=30.76 Aligned_cols=37 Identities=30% Similarity=0.618 Sum_probs=28.3
Q ss_pred HHHHHhhCCCceEEeeccCCCceEEEEccCCCCcchhhHHh-cC
Q 018378 289 AEKLVKTCPVNVFDIEDIGSGKKRATVAQPRACTLCRECLR-CG 331 (357)
Q Consensus 289 a~~l~~~cp~gV~~i~~~~~g~~~~~V~~~~~ct~crec~r-c~ 331 (357)
+..+++.||.++|.+++ + .. +.++..|+.|..|++ |.
T Consensus 11 C~~C~~~CP~~ai~~~~---~--~~-~~~~~~C~~C~~C~~~CP 48 (55)
T 2fdn_A 11 CGACEPECPVNAISSGD---D--RY-VIDADTCIDCGACAGVCP 48 (55)
T ss_dssp CCTTGGGCTTCCEECCS---S--SC-EECTTTCCCCCHHHHTCT
T ss_pred hhhHHHHCCccccCcCC---C--EE-EeccccCcChhChHHHcc
Confidence 45688899999998763 1 22 357889999999998 53
No 21
>1dwl_A Ferredoxin I; electron transfer, model, heteronuclear docking; HET: HEC; NMR {Desulfomicrobium norvegicum} SCOP: i.4.1.1
Probab=75.97 E-value=2.8 Score=28.45 Aligned_cols=38 Identities=26% Similarity=0.581 Sum_probs=28.0
Q ss_pred HHHHHhhCCCceEEe-eccCCCceEEEE-ccCCCCcchhhHHh-cC
Q 018378 289 AEKLVKTCPVNVFDI-EDIGSGKKRATV-AQPRACTLCRECLR-CG 331 (357)
Q Consensus 289 a~~l~~~cp~gV~~i-~~~~~g~~~~~V-~~~~~ct~crec~r-c~ 331 (357)
+..+++.|| ++|.+ ++. +.+.+ .++..|+.|+.|++ |.
T Consensus 12 C~~C~~~Cp-~~~~~~~~~----~~~~~~~~~~~c~~C~~C~~~CP 52 (59)
T 1dwl_A 12 CESCVELCP-EVFAMIDGE----EKAMVTAPDSTAECAQDAIDACP 52 (59)
T ss_dssp CCGGGGTST-TTEEEEECS----SCEEESCTTCCCGGGGTGGGGST
T ss_pred hhHHHHHCC-HHheecCCC----CcEEEecChhhhhHHHHHHHhCC
Confidence 556888999 68887 322 24555 58889999999998 53
No 22
>3or1_B Sulfite reductase beta; dissimilatory sulfite reductase, sulfate reduction, oxidored sulfite reduction; HET: SRM; 1.76A {Desulfovibrio gigas} PDB: 3or2_B* 2v4j_B* 2xsj_B*
Probab=75.42 E-value=2 Score=42.25 Aligned_cols=41 Identities=22% Similarity=0.543 Sum_probs=30.0
Q ss_pred HHHHhhCCCceEEeeccC-CCc--eEEEEccCCCCcchhhHHh-cC
Q 018378 290 EKLVKTCPVNVFDIEDIG-SGK--KRATVAQPRACTLCRECLR-CG 331 (357)
Q Consensus 290 ~~l~~~cp~gV~~i~~~~-~g~--~~~~V~~~~~ct~crec~r-c~ 331 (357)
..+++.||.++|...+.. +|+ +.+. .|..+|+.|..|+. |.
T Consensus 225 ~~cv~~CPt~AI~~~~~~~~g~~~~~v~-id~~~Ci~Cg~C~~~CP 269 (386)
T 3or1_B 225 PLAVAACPTAAVKPITAEVNGQKVKSVA-INNDRCMYCGNCYTMCP 269 (386)
T ss_dssp HHHHHHCTTCCEEEEEEEETTEEEEEEE-ECTTTCCCCCHHHHHCT
T ss_pred hhhhhhCchhhccccccccCCccccccc-cCCCcCCccccHHHhCc
Confidence 578999999999886320 232 3344 57788999999999 73
No 23
>2v2k_A Ferredoxin; iron, transport, iron-sulfur, mycobacterium tuberculosis, Fe cluster, metal-binding, electron transfer, transport; 1.6A {Mycobacterium smegmatis}
Probab=74.40 E-value=1.3 Score=34.64 Aligned_cols=36 Identities=22% Similarity=0.600 Sum_probs=28.4
Q ss_pred HHHHhhCCCceEEeeccCCCceEEEEccCCCCcchhhHHh-cC
Q 018378 290 EKLVKTCPVNVFDIEDIGSGKKRATVAQPRACTLCRECLR-CG 331 (357)
Q Consensus 290 ~~l~~~cp~gV~~i~~~~~g~~~~~V~~~~~ct~crec~r-c~ 331 (357)
..+++.||.++|.+++ +.+ +.++..|+.|..|+. |.
T Consensus 14 ~~C~~~CP~~ai~~~~-----~~~-~~~~~~C~~Cg~C~~~CP 50 (105)
T 2v2k_A 14 KACIEECPVDCIYEGA-----RML-YIHPDECVDCGACEPVCP 50 (105)
T ss_dssp CHHHHHCTTCCEEECS-----SCE-EECTTTCCCCCCSGGGCT
T ss_pred ChhhhhcCccccCcCC-----CcE-EEeCCcCcchhhHHHhCC
Confidence 6789999999998863 123 447889999999998 63
No 24
>2fgo_A Ferredoxin; allochromatium vinosum, [4Fe-4S] cluster, reduction potential, iron binding protein electron transport; 1.32A {Pseudomonas aeruginosa}
Probab=73.96 E-value=1.4 Score=32.84 Aligned_cols=37 Identities=24% Similarity=0.605 Sum_probs=28.6
Q ss_pred HHHHHhhCCCceEEeeccCCCceEEEEccCCCCcchh------hHHh-cC
Q 018378 289 AEKLVKTCPVNVFDIEDIGSGKKRATVAQPRACTLCR------ECLR-CG 331 (357)
Q Consensus 289 a~~l~~~cp~gV~~i~~~~~g~~~~~V~~~~~ct~cr------ec~r-c~ 331 (357)
+..+++.||.++|.+++ +. .+.++..|+.|. .|++ |.
T Consensus 11 C~~C~~~CP~~ai~~~~-----~~-~~~~~~~C~~C~~~~~~~~C~~~CP 54 (82)
T 2fgo_A 11 CDVCEPECPNGAISQGE-----EI-YVIDPNLCTECVGHYDEPQCQQVCP 54 (82)
T ss_dssp CCTTGGGCTTCCEEECS-----SS-EEECTTTCCTTTTTCSSCHHHHHCT
T ss_pred hhhHHHHCChhccCCCC-----Ce-EEEEchhCccCCCcCCCCHhHhhCC
Confidence 55788899999999863 12 345788999998 9998 63
No 25
>3mm5_A Sulfite reductase, dissimilatory-type subunit ALP; alpha-beta-protein, oxidoreductase; HET: SRM; 1.80A {Archaeoglobus fulgidus} PDB: 3mm6_A* 3mm7_A* 3mm8_A* 3mm9_A* 3mma_A* 3mmb_A* 3mmc_A* 3c7b_A*
Probab=71.20 E-value=1.7 Score=43.41 Aligned_cols=37 Identities=27% Similarity=0.681 Sum_probs=29.8
Q ss_pred HHHHHhhCCCceEEeeccCCCceEEEEccCCCCcchhhHHh-cC
Q 018378 289 AEKLVKTCPVNVFDIEDIGSGKKRATVAQPRACTLCRECLR-CG 331 (357)
Q Consensus 289 a~~l~~~cp~gV~~i~~~~~g~~~~~V~~~~~ct~crec~r-c~ 331 (357)
+..+++.||.+++..++ +++.+ |...|+.|..|++ |.
T Consensus 260 ~~~cv~~CPt~Ai~~~~-----~~~~i-d~~~Ci~Cg~Ci~~CP 297 (418)
T 3mm5_A 260 ENEVVKLCPTGAIKWDG-----KELTI-DNRECVRCMHCINKMP 297 (418)
T ss_dssp HHHTGGGCTTCCEEECS-----SCEEE-CTTTCCCCCHHHHHCT
T ss_pred CccccccCCccccccCC-----ceeEE-ChhhcCccChhHHhCc
Confidence 46789999999999862 35655 7788999999999 73
No 26
>3mm5_B Sulfite reductase, dissimilatory-type subunit BET; alpha-beta-protein, oxidoreductase; HET: SRM; 1.80A {Archaeoglobus fulgidus} PDB: 3c7b_B* 3mm6_B* 3mm7_B* 3mm8_B* 3mm9_B* 3mma_B* 3mmb_B* 3mmc_B*
Probab=70.54 E-value=2 Score=41.83 Aligned_cols=38 Identities=21% Similarity=0.569 Sum_probs=29.7
Q ss_pred HHHHhhCCCceEEeeccCCCceEEEEccCCCCcchhhHHh-cC
Q 018378 290 EKLVKTCPVNVFDIEDIGSGKKRATVAQPRACTLCRECLR-CG 331 (357)
Q Consensus 290 ~~l~~~cp~gV~~i~~~~~g~~~~~V~~~~~ct~crec~r-c~ 331 (357)
..+++.||.++|..+.. .+.+. .|..+|+.|..|+. |.
T Consensus 214 ~~Cv~~CP~~AI~~~~~---~~~~~-id~~~C~~Cg~C~~~CP 252 (366)
T 3mm5_B 214 PSTVAACPTGALKPDMK---NKTIK-VDVEKCMYCGNCYTMCP 252 (366)
T ss_dssp HHHHHTCTTCCEEEETT---TTEEE-ECGGGCCCCCHHHHHCT
T ss_pred cchhccCCccceEecCC---CCeEE-EehhhCCCcchHHHhCC
Confidence 67899999999998742 13454 46778999999999 74
No 27
>1rgv_A Ferredoxin; electron transport; 2.90A {Thauera aromatica} SCOP: d.58.1.1
Probab=69.73 E-value=1.3 Score=32.89 Aligned_cols=37 Identities=27% Similarity=0.610 Sum_probs=28.4
Q ss_pred HHHHHhhCCCceEEeeccCCCceEEEEccCCCCcchh------hHHh-cC
Q 018378 289 AEKLVKTCPVNVFDIEDIGSGKKRATVAQPRACTLCR------ECLR-CG 331 (357)
Q Consensus 289 a~~l~~~cp~gV~~i~~~~~g~~~~~V~~~~~ct~cr------ec~r-c~ 331 (357)
+..+++.||.++|.+++. .. +.++..|+.|. .|++ |.
T Consensus 11 C~~C~~~CP~~ai~~~~~-----~~-~~~~~~C~~C~~~~~~~~C~~~CP 54 (80)
T 1rgv_A 11 CDACVEECPNEAITPGDP-----IY-VIDPTKCSECVGAFDEPQCRLVCP 54 (80)
T ss_dssp CCTTTTTCTTCCEECCSS-----SC-EECTTTCCTTTTTCSSCHHHHHCS
T ss_pred hhhHHHHcChhccCcCCC-----ee-EEcchhCcCCCCcCCccHHHHhcC
Confidence 456888999999998631 22 34788999999 9998 63
No 28
>1f2g_A Ferredoxin II; electron transport, FDII desulfovibrio gigas; NMR {Desulfovibrio gigas} SCOP: d.58.1.4 PDB: 1fxd_A
Probab=68.49 E-value=3.1 Score=28.43 Aligned_cols=38 Identities=26% Similarity=0.524 Sum_probs=26.7
Q ss_pred HHHHHhhCCCceEEeeccCCCceEEEEcc--CCCCcchhhHHh-cC
Q 018378 289 AEKLVKTCPVNVFDIEDIGSGKKRATVAQ--PRACTLCRECLR-CG 331 (357)
Q Consensus 289 a~~l~~~cp~gV~~i~~~~~g~~~~~V~~--~~~ct~crec~r-c~ 331 (357)
+..+++.||. +|.+++. | .+.+.+ ...|+.|+.|++ |.
T Consensus 11 C~~C~~~CP~-~~~~~~~--~--~~~~~~~~~~~C~~C~~C~~~CP 51 (58)
T 1f2g_A 11 CEACVEICPD-VFEMNEE--G--DKAVVINPDSDLDCVEEAIDSCP 51 (58)
T ss_dssp CCHHHHHCTT-TEEECSS--S--SSEEESCTTCCSTHHHHHHHTCS
T ss_pred chHHHHhCCc-cEEECCC--C--cEEEeCCCccchHHHHHHHhhCC
Confidence 5578889997 7777532 2 223335 788999999998 53
No 29
>3or1_A Sulfite reductase alpha; dissimilatory sulfite reductase, sulfate reduction, oxidored sulfite reduction; HET: SRM; 1.76A {Desulfovibrio gigas} PDB: 3or2_A* 2v4j_A* 2xsj_A*
Probab=67.02 E-value=2.6 Score=42.47 Aligned_cols=36 Identities=22% Similarity=0.611 Sum_probs=28.9
Q ss_pred HHHHhhCCCceEEeeccCCCceEEEEccCCCCcchhhHHh-cC
Q 018378 290 EKLVKTCPVNVFDIEDIGSGKKRATVAQPRACTLCRECLR-CG 331 (357)
Q Consensus 290 ~~l~~~cp~gV~~i~~~~~g~~~~~V~~~~~ct~crec~r-c~ 331 (357)
..+++.||.+++.++. +++.+. ...|+.|..|++ |.
T Consensus 278 ~~vv~~CPt~ai~~~~-----~~l~Id-~~~C~~Cg~Ci~~CP 314 (437)
T 3or1_A 278 AEVVGLCPTGCMTYES-----GTLSID-NKNCTRCMHCINTMP 314 (437)
T ss_dssp HHTTTTCTTCCEEEET-----TEEEEC-GGGCCCCSHHHHHCT
T ss_pred hhhhccCcHHheeecC-----CEEEEc-cccCCchhhhHhhCc
Confidence 5678899999999973 467664 567999999999 73
No 30
>1bc6_A 7-Fe ferredoxin; electron transport, iron-sulfur; NMR {Bacillus schlegelii} SCOP: d.58.1.2 PDB: 1bd6_A 1bqx_A 1bwe_A
Probab=66.91 E-value=1.5 Score=32.17 Aligned_cols=37 Identities=24% Similarity=0.629 Sum_probs=28.0
Q ss_pred HHHHHhhCCCceEEeeccCCCceEEEEccCCCCcchhhHHh-cC
Q 018378 289 AEKLVKTCPVNVFDIEDIGSGKKRATVAQPRACTLCRECLR-CG 331 (357)
Q Consensus 289 a~~l~~~cp~gV~~i~~~~~g~~~~~V~~~~~ct~crec~r-c~ 331 (357)
+..+++.||.++|.+++ +.. +.++..|+.|..|+. |.
T Consensus 13 C~~C~~~Cp~~ai~~~~-----~~~-~~~~~~C~~Cg~C~~~CP 50 (77)
T 1bc6_A 13 DASCVEVCPVDCIHEGE-----DQY-YIDPDVCIDCGACEAVCP 50 (77)
T ss_dssp CCSSTTTCTTCCEEECS-----SSE-EECTTTCCSCCSHHHHSG
T ss_pred cchhHHhcccccEEeCC-----CcE-EECcccCcCccCCHhhcC
Confidence 34678899999998853 223 347889999999998 63
No 31
>3eun_A Ferredoxin; electron transport, [4Fe-4S] cluster, 4Fe-4S, iron, iron-sulfur, metal-binding, transport; 1.05A {Allochromatium vinosum} SCOP: d.58.1.1 PDB: 1blu_A 3exy_A
Probab=66.85 E-value=1.9 Score=32.25 Aligned_cols=44 Identities=23% Similarity=0.535 Sum_probs=31.5
Q ss_pred HHHHHhhCCCceEEeeccCCCceEEEEccCCCCcchh------hHHh-cCCCcCCcEEEE
Q 018378 289 AEKLVKTCPVNVFDIEDIGSGKKRATVAQPRACTLCR------ECLR-CGEEWEKRVSIR 341 (357)
Q Consensus 289 a~~l~~~cp~gV~~i~~~~~g~~~~~V~~~~~ct~cr------ec~r-c~~~~~~~V~l~ 341 (357)
+..+++.||.++|.+++ +.+ +.++..|+.|. .|+. |.. +.+++.
T Consensus 11 C~~C~~~CP~~ai~~~~-----~~~-~i~~~~C~~C~~~~~~~~C~~~CP~---~Ai~~~ 61 (82)
T 3eun_A 11 CDVCEPECPNGAISQGD-----ETY-VIEPSLCTECVGHYETSQCVEVCPV---DAIIKD 61 (82)
T ss_dssp CCTTGGGCTTCCEEECS-----SSE-EECGGGCCTTTTTCSSCHHHHHCTT---CCEEEC
T ss_pred ccchHHHCChhheEcCC-----Cce-EEchhhcCCCCCCCCccHHHHhCCc---cceEEc
Confidence 55788999999998853 223 34678899999 9998 642 355543
No 32
>1iqz_A Ferredoxin; iron-sulfer protein, ultlahigh resolution analysis, geometry of [4Fe-4S] cluster, electron transport; 0.92A {Bacillus thermoproteolyticus} SCOP: d.58.1.4 PDB: 1ir0_A 1wtf_A*
Probab=64.68 E-value=5 Score=29.66 Aligned_cols=45 Identities=11% Similarity=0.225 Sum_probs=30.9
Q ss_pred HHHHHhhCCCceEEeeccCCCceEEEEc-c---------CCCCcchhhHHh-cCCCcCCcEEEE
Q 018378 289 AEKLVKTCPVNVFDIEDIGSGKKRATVA-Q---------PRACTLCRECLR-CGEEWEKRVSIR 341 (357)
Q Consensus 289 a~~l~~~cp~gV~~i~~~~~g~~~~~V~-~---------~~~ct~crec~r-c~~~~~~~V~l~ 341 (357)
+..+++.|| ++|.+++. +++.+. + ...|..|..|++ |.. ++|++.
T Consensus 14 Cg~C~~~CP-~~~~~~~~----g~~~~~~~~~~~~~~~~~~~c~~C~~C~~~CP~---~AI~~~ 69 (81)
T 1iqz_A 14 CGACGAAAP-DIYDYDED----GIAYVTLDDNQGIVEVPDILIDDMMDAFEGCPT---DSIKVA 69 (81)
T ss_dssp CSHHHHHCT-TTEEECTT----SCEEETTTTTSSCSCCCGGGHHHHHHHHHHCTT---CCEEEE
T ss_pred cChhhHhCc-hheeeCCC----CeEEEeccCccccCCCCHHHHHHHHHHHHhCCH---hHEEEe
Confidence 678999999 89988632 235554 2 346888999998 642 466664
No 33
>2zvs_A Uncharacterized ferredoxin-like protein YFHL; electron transport, [4Fe-4S] clusters, iron-SULF clusters, reduction potential; 1.65A {Escherichia coli}
Probab=64.25 E-value=1.4 Score=33.12 Aligned_cols=37 Identities=22% Similarity=0.519 Sum_probs=28.3
Q ss_pred HHHHHhhCCCceEEeeccCCCceEEEEccCCCCcchh------hHHh-cC
Q 018378 289 AEKLVKTCPVNVFDIEDIGSGKKRATVAQPRACTLCR------ECLR-CG 331 (357)
Q Consensus 289 a~~l~~~cp~gV~~i~~~~~g~~~~~V~~~~~ct~cr------ec~r-c~ 331 (357)
+..+++.||.++|.+++. .. +.++.+|+.|. .|++ |.
T Consensus 11 C~~C~~~CP~~ai~~~~~-----~~-~~~~~~C~~C~~~~~~~~C~~~CP 54 (85)
T 2zvs_A 11 CDMCEPECPNEAISMGDH-----IY-EINSDKCTECVGHYETPTCQKVCP 54 (85)
T ss_dssp CCTTTTTCTTCCEECCSS-----SC-EECGGGCCTTTTTCSSCHHHHHCS
T ss_pred hhHHHHHCchhccCcCCC-----ce-EEeChhccCCCCcCCccHhhHhCc
Confidence 557888999999998631 22 34778899999 9998 64
No 34
>1hfe_L Protein (Fe-only hydrogenase (E.C.1.18.99.1) (larger subunit)); hydrogene metabolism, periplasm; 1.60A {Desulfovibrio vulgaris subsp} SCOP: c.96.1.1 d.58.1.5 PDB: 1e08_A* 1gx7_A*
Probab=56.01 E-value=1.5 Score=43.43 Aligned_cols=49 Identities=22% Similarity=0.461 Sum_probs=33.9
Q ss_pred eEEEcC-CCChHhHHHHHhhCCCceEEeeccCCCceEEEEccCCCCcchhhHHh-cC
Q 018378 277 EIVLLE-DVEDEDAEKLVKTCPVNVFDIEDIGSGKKRATVAQPRACTLCRECLR-CG 331 (357)
Q Consensus 277 ~I~i~~-~i~~~~a~~l~~~cp~gV~~i~~~~~g~~~~~V~~~~~ct~crec~r-c~ 331 (357)
.+.++. .+. .|..|++.||.++|..++ | ....+.+...|+.|..|+. |.
T Consensus 27 ~i~~d~~kCi--~Cg~C~~~CP~~ai~~~~---~-~~~~i~~~~~C~~Cg~C~~~CP 77 (421)
T 1hfe_L 27 FVQIDEAKCI--GCDTCSQYCPTAAIFGEM---G-EPHSIPHIEACINCGQCLTHCP 77 (421)
T ss_dssp SEEECTTTCC--CCCHHHHHCTTCCCBCCT---T-SCCBCCCGGGCCCCCTTGGGCT
T ss_pred eEEECcccCC--CccHHHHhcCcCceeccc---c-cceeecChhhCCchhhHHHhhC
Confidence 455543 343 477899999999987653 2 1222337888999999998 74
No 35
>2ivf_B Ethylbenzene dehydrogenase beta-subunit; anaerobic hydrocarbon degradation, MOCO, Fe/S cluster, MO- B enzyme, DMSO reductase family; HET: MES MGD MD1 HEM; 1.88A {Aromatoleum aromaticum}
Probab=55.67 E-value=5.8 Score=38.70 Aligned_cols=16 Identities=19% Similarity=0.478 Sum_probs=9.3
Q ss_pred HHHHHhhCCCceEEee
Q 018378 289 AEKLVKTCPVNVFDIE 304 (357)
Q Consensus 289 a~~l~~~cp~gV~~i~ 304 (357)
+..+++.||.+++.+.
T Consensus 187 Cg~Cv~aCP~~Ai~~~ 202 (352)
T 2ivf_B 187 HRHCVEACPYKAIYFN 202 (352)
T ss_dssp CCHHHHHCTTCCEEEE
T ss_pred chHHHhhcCccceecc
Confidence 4456666666666554
No 36
>1sj1_A Ferredoxin; thermostability, iron-sulfur cluster, hexammine cobalt(III), electron transport; HET: NCO; 1.50A {Pyrococcus furiosus} SCOP: d.58.1.4 PDB: 1siz_A* 2z8q_A 3pni_A
Probab=52.64 E-value=9.7 Score=26.23 Aligned_cols=46 Identities=22% Similarity=0.484 Sum_probs=29.8
Q ss_pred HHHHHhhCCCceEEeeccCCCceEEEEcc---CC--CCcchhhHHh-cCCCcCCcEEEEE
Q 018378 289 AEKLVKTCPVNVFDIEDIGSGKKRATVAQ---PR--ACTLCRECLR-CGEEWEKRVSIRR 342 (357)
Q Consensus 289 a~~l~~~cp~gV~~i~~~~~g~~~~~V~~---~~--~ct~crec~r-c~~~~~~~V~l~~ 342 (357)
+..+++.|| ++|.+++. | ...+.+ +. .|+.|..|++ |.. +.|++..
T Consensus 14 C~~C~~~Cp-~~~~~~~~--~--~~~~~~~~~~~~~~c~~c~~C~~~CP~---~Ai~~~~ 65 (66)
T 1sj1_A 14 DAICASLCP-DVFEMNDE--G--KAQPKVEVIEDEELYNCAKEAMEACPV---SAITIEE 65 (66)
T ss_dssp CCHHHHHCT-TTEEECTT--S--CEEESCSCBCCHHHHHHHHHHHHHCTT---CCEEEEE
T ss_pred chHHHHhCC-ceEEECCC--C--ceeecccCCCcHHHHHHHHHHHhhCCH---hhEEEec
Confidence 567899999 59988532 2 344444 23 3678999988 642 4676653
No 37
>2c42_A Pyruvate-ferredoxin oxidoreductase; 4Fe-4S, iron, iron-sulfur, iron-sulfur cluster, pyruvate catabolism, TPP-dependent enzyme; HET: TPP; 1.78A {Desulfovibrio africanus} SCOP: c.36.1.8 c.36.1.12 c.48.1.3 c.64.1.1 d.58.1.5 PDB: 1b0p_A* 1kek_A* 2c3o_A* 2c3p_A* 2c3u_A* 2c3y_A* 2c3m_A* 2pda_A* 2uza_A*
Probab=52.20 E-value=6.6 Score=44.32 Aligned_cols=57 Identities=19% Similarity=0.375 Sum_probs=37.4
Q ss_pred HhHHHHHhhCCCceEEee---cc---------------C---CCceEEEEccCCCCcchhhHHh-cCCCcCCcEEEEEeC
Q 018378 287 EDAEKLVKTCPVNVFDIE---DI---------------G---SGKKRATVAQPRACTLCRECLR-CGEEWEKRVSIRRVK 344 (357)
Q Consensus 287 ~~a~~l~~~cp~gV~~i~---~~---------------~---~g~~~~~V~~~~~ct~crec~r-c~~~~~~~V~l~~~~ 344 (357)
-.|.+|+..||.++|... +. + .|.......++..|+.|..|+. |... .+.+.+....
T Consensus 689 i~Cg~Cv~vCP~~AI~~~~~~~~e~~~ap~g~~~~~~~~k~~~g~~~~~~v~~~~C~gCG~Cv~vCP~~-~~AI~~~~~~ 767 (1231)
T 2c42_A 689 IQCNQCAFVCPHSAILPVLAKEEELVGAPANFTALEAKGKELKGYKFRIQINTLDCMGCGNCADICPPK-EKALVMQPLD 767 (1231)
T ss_dssp CCCCHHHHHCSSCCEEEEEECGGGGTTCCTTCCCEECCSGGGTTCEEEEEECTTTCCCCCHHHHHCSSS-SCSEEEEEGG
T ss_pred CchhhHHHhCCcccccccccchHHHhhCcccccccccccccccccccceeechhhCCChhHHHhhCCCC-ccCeEEecch
Confidence 457899999999999763 10 0 0111233457889999999999 8431 2577766543
No 38
>2vpz_B NRFC protein; oxidoreductase, molybdopterin guanine dinucleotide, iron-sulfur, metal-binding, molybdopterin; HET: MGD; 2.40A {Thermus thermophilus} PDB: 2vpx_B* 2vpw_B* 2vpy_B*
Probab=51.13 E-value=6.3 Score=34.81 Aligned_cols=68 Identities=13% Similarity=0.321 Sum_probs=40.1
Q ss_pred eeecceeeEEeeeeceEEEcC-CCChHhHHHHHhhCCCceEEeeccCCCceEEEEccCCCCcchh---------hHHh-c
Q 018378 262 AKWSPVATAWYRMLPEIVLLE-DVEDEDAEKLVKTCPVNVFDIEDIGSGKKRATVAQPRACTLCR---------ECLR-C 330 (357)
Q Consensus 262 AKwSPVata~Yr~~P~I~i~~-~i~~~~a~~l~~~cp~gV~~i~~~~~g~~~~~V~~~~~ct~cr---------ec~r-c 330 (357)
++..|+......-...+.++. ...+ +..++..||.++|.+++.. . ..+|++|. .|+. |
T Consensus 67 ~~~CP~gAi~~~~~g~~~id~~~Cig--C~~C~~~CP~~Ai~~~~~~---~------~~kC~~C~~~~~~g~~p~Cv~~C 135 (195)
T 2vpz_B 67 VPVCPTGASYQTKDGLVLVDPKKCIA--CGACIAACPYDARYLHPAG---Y------VSKCTFCAHRLEKGKVPACVETC 135 (195)
T ss_dssp TTTCSSSCEEECTTSCEEECTTTCCC--CCHHHHHCTTCCCEECTTS---S------EECCCTTHHHHHTTCCCHHHHSC
T ss_pred HHhcCCCceecccccceeecCCCCCC--cChhHhhCCCCCeEECCCC---C------CccCcCcchHHhCCCCchhHhhC
Confidence 445566544333223455543 3333 6678888999998886432 1 46799998 4887 5
Q ss_pred CCCcCCcEEEEEe
Q 018378 331 GEEWEKRVSIRRV 343 (357)
Q Consensus 331 ~~~~~~~V~l~~~ 343 (357)
.. +.+.++..
T Consensus 136 P~---~Ai~~g~~ 145 (195)
T 2vpz_B 136 PT---YCRTFGDL 145 (195)
T ss_dssp TT---CCEEEEET
T ss_pred Cc---ccEEEecc
Confidence 32 46666543
No 39
>1q16_B Respiratory nitrate reductase 1 beta chain; membrane protein, electron-transfer, oxidoreductase; HET: FME MD1 HEM AGA 3PH; 1.90A {Escherichia coli} SCOP: d.58.1.5 PDB: 1r27_B* 1siw_B* 1y5i_B* 1y5l_B* 1y5n_B* 3ir5_B* 3ir6_B* 3ir7_B* 1y4z_B* 3egw_B*
Probab=50.70 E-value=7.1 Score=40.09 Aligned_cols=35 Identities=17% Similarity=0.437 Sum_probs=23.6
Q ss_pred HHHHHhhCCCceEEeeccCCCceEEEEccCCCCcchh---------hHHh-cC
Q 018378 289 AEKLVKTCPVNVFDIEDIGSGKKRATVAQPRACTLCR---------ECLR-CG 331 (357)
Q Consensus 289 a~~l~~~cp~gV~~i~~~~~g~~~~~V~~~~~ct~cr---------ec~r-c~ 331 (357)
|..|++.||.++|.++... . ...+|++|. .|+. |.
T Consensus 220 Cg~Cv~~CP~~AI~~~~~~---~-----~~~kC~~Cg~ri~~G~~P~Cv~~CP 264 (512)
T 1q16_B 220 WRMCITGCPYKKIYFNWKS---G-----KSEKCIFCYPRIEAGQPTVCSETCV 264 (512)
T ss_dssp CCCHHHHCTTCCEEEETTT---T-----EEEECCTTHHHHTTTCCCHHHHTCT
T ss_pred chHHHhhCCccceecccCC---C-----CcccCcCCCchhhcCCCCceEeeCc
Confidence 6677888888888776421 1 145688887 7877 53
No 40
>1kqf_B FDH-N beta S, formate dehydrogenase, nitrate-inducible, iron-SU subunit; oxidoreductase, selenium, selenocysteine, seCys, molybdenum; HET: MGD HEM CDL; 1.60A {Escherichia coli} SCOP: d.58.1.5 f.23.22.1 PDB: 1kqg_B*
Probab=47.74 E-value=8.8 Score=36.07 Aligned_cols=68 Identities=18% Similarity=0.343 Sum_probs=39.5
Q ss_pred eeecce-eeEEeeeeceEEEcC-CCChHhHHHHHhhCCCceEEeeccCCCceEEEEccCCCCcchh---------hHHh-
Q 018378 262 AKWSPV-ATAWYRMLPEIVLLE-DVEDEDAEKLVKTCPVNVFDIEDIGSGKKRATVAQPRACTLCR---------ECLR- 329 (357)
Q Consensus 262 AKwSPV-ata~Yr~~P~I~i~~-~i~~~~a~~l~~~cp~gV~~i~~~~~g~~~~~V~~~~~ct~cr---------ec~r- 329 (357)
.+..|+ ......-...+.++. .+. .+..++..||.+++.++..+ .. ..+|++|. .|++
T Consensus 109 ~~~CP~~gAi~~~~~g~v~id~~~Ci--gCg~C~~~CP~~ai~~~~~~---~~-----~~kC~~C~~r~~~g~~p~Cv~~ 178 (294)
T 1kqf_B 109 LKACPSAGAIIQYANGIVDFQSENCI--GCGYCIAGCPFNIPRLNKED---NR-----VYKCTLCVDRVSVGQEPACVKT 178 (294)
T ss_dssp HHHCCSTTSEEEETTSCEEECGGGCC--CCCHHHHHCTTCCCEEETTT---TE-----EECCCTTHHHHTTTCCCHHHHH
T ss_pred hhhCCccCccccccccceEeCcccCC--CcchhhhcCCCCCcEecCCC---CC-----eeeCCCccchhhcCccHHHHHh
Confidence 456676 333222223455543 343 36788889999998886421 11 24799998 8888
Q ss_pred cCCCcCCcEEEEE
Q 018378 330 CGEEWEKRVSIRR 342 (357)
Q Consensus 330 c~~~~~~~V~l~~ 342 (357)
|.. +.+.++.
T Consensus 179 CP~---~Ai~~~~ 188 (294)
T 1kqf_B 179 CPT---GAIHFGT 188 (294)
T ss_dssp CTT---SCEEEEE
T ss_pred CCc---CcEEEec
Confidence 643 3565553
No 41
>1gte_A Dihydropyrimidine dehydrogenase; electron transfer, flavin, iron-sulfur clusters, pyrimidine catabolism, 5-fluorouracil degradation, oxidoreductase; HET: FMN FAD; 1.65A {Sus scrofa} SCOP: a.1.2.2 c.1.4.1 c.3.1.1 c.4.1.1 d.58.1.5 PDB: 1gt8_A* 1gth_A* 1h7w_A* 1h7x_A*
Probab=39.33 E-value=11 Score=41.29 Aligned_cols=60 Identities=22% Similarity=0.286 Sum_probs=40.3
Q ss_pred ceEEEcC-CCChHhHHHHHhhCCC---ceEEeeccCCCceEEEEccCCCCcchhhHHh-cCCCcCCcEEEEEeC
Q 018378 276 PEIVLLE-DVEDEDAEKLVKTCPV---NVFDIEDIGSGKKRATVAQPRACTLCRECLR-CGEEWEKRVSIRRVK 344 (357)
Q Consensus 276 P~I~i~~-~i~~~~a~~l~~~cp~---gV~~i~~~~~g~~~~~V~~~~~ct~crec~r-c~~~~~~~V~l~~~~ 344 (357)
+.+.++. .+. .|..|++.||. ++|.+++.+ ....+ + ..|+.|..|.. |.. .+.|++....
T Consensus 944 ~~~~id~~~C~--~Cg~C~~~CP~~~~~ai~~~~~~---~~~~~-~-~~C~~Cg~C~~~CP~--~~Ai~~~~~~ 1008 (1025)
T 1gte_A 944 VVAVIDEEMCI--NCGKCYMTCNDSGYQAIQFDPET---HLPTV-T-DTCTGCTLCLSVCPI--IDCIRMVSRT 1008 (1025)
T ss_dssp EEEEECTTTCC--CCCHHHHHHHHHSCSCEEECTTT---CCEEE-C-TTCCCCCHHHHHCSS--TTTEEEEECC
T ss_pred ceEEEEcccCc--ccCHHHHhcCccccCCEEEeCCC---ceEEe-C-ccCCChhHHHhhCCC--CCCEEEecCc
Confidence 3445553 353 37889999996 899886421 23444 4 78999999999 753 1477776554
No 42
>1ti6_B Pyrogallol hydroxytransferase small subunit; molybdenum binding enzyme, MGD-cofactors, DMSO-reductase family, 4Fe-4S-cluster; HET: MGD BTT; 2.00A {Pelobacter acidigallici} SCOP: b.3.5.1 d.58.1.5 PDB: 1ti2_B* 1ti4_B* 1vld_N* 1vle_N* 1vlf_N*
Probab=37.77 E-value=19 Score=33.52 Aligned_cols=67 Identities=19% Similarity=0.396 Sum_probs=40.0
Q ss_pred eecceeeEEeee-eceEEEcC-CCChHhHHHHHhhCCCceEEeeccCCCceEEEEccCCCCcch----------h---hH
Q 018378 263 KWSPVATAWYRM-LPEIVLLE-DVEDEDAEKLVKTCPVNVFDIEDIGSGKKRATVAQPRACTLC----------R---EC 327 (357)
Q Consensus 263 KwSPVata~Yr~-~P~I~i~~-~i~~~~a~~l~~~cp~gV~~i~~~~~g~~~~~V~~~~~ct~c----------r---ec 327 (357)
+-.|+ |.|+. ...+.++. .+ -.+..+++.||.+++.++... . ...+|++| . .|
T Consensus 78 ~~CP~--Ai~~~~~g~v~id~~~C--igC~~C~~~CP~~Ai~~~~~~---~-----~~~kC~~C~~r~~~~~~~G~~P~C 145 (274)
T 1ti6_B 78 AKGNG--AVYQREDGIVLIDPEKA--KGKKELLDTCPYGVMYWNEEE---N-----VAQKCTMCAHLLDDESWAPKMPRC 145 (274)
T ss_dssp HHTTT--SEEECTTSCEEECTTTT--TTCGGGGGGCSSCCCEEETTT---T-----EEECCCTTHHHHTCTTCTTCSCHH
T ss_pred hhChH--HhhhccCCcEEechhhc--cchHHHHhhCccCCeEEEccc---C-----ccccCCCchhhhhhhccCCCCcch
Confidence 44566 33432 34455553 23 336778888999998886421 1 24679999 4 77
Q ss_pred Hh-cCCCcCCcEEEEEeC
Q 018378 328 LR-CGEEWEKRVSIRRVK 344 (357)
Q Consensus 328 ~r-c~~~~~~~V~l~~~~ 344 (357)
+. |.. +.+.++...
T Consensus 146 v~~CP~---~Ai~~~~~~ 160 (274)
T 1ti6_B 146 AHNCGS---FVYEFLKTT 160 (274)
T ss_dssp HHHCSS---CCEEEEEEC
T ss_pred hhhCCc---CceEEcCCC
Confidence 77 543 467666543
No 43
>1ti6_B Pyrogallol hydroxytransferase small subunit; molybdenum binding enzyme, MGD-cofactors, DMSO-reductase family, 4Fe-4S-cluster; HET: MGD BTT; 2.00A {Pelobacter acidigallici} SCOP: b.3.5.1 d.58.1.5 PDB: 1ti2_B* 1ti4_B* 1vld_N* 1vle_N* 1vlf_N*
Probab=35.62 E-value=16 Score=34.17 Aligned_cols=34 Identities=18% Similarity=0.172 Sum_probs=25.9
Q ss_pred HHhhCCCceEEeeccCCCceEEEEccCCCCcchhhHHh-cC
Q 018378 292 LVKTCPVNVFDIEDIGSGKKRATVAQPRACTLCRECLR-CG 331 (357)
Q Consensus 292 l~~~cp~gV~~i~~~~~g~~~~~V~~~~~ct~crec~r-c~ 331 (357)
+++.||. ++...+. | ..+.+..+|+.|+.|.+ |.
T Consensus 76 C~~~CP~-Ai~~~~~--g---~v~id~~~CigC~~C~~~CP 110 (274)
T 1ti6_B 76 CVAKGNG-AVYQRED--G---IVLIDPEKAKGKKELLDTCP 110 (274)
T ss_dssp HHHHTTT-SEEECTT--S---CEEECTTTTTTCGGGGGGCS
T ss_pred HHhhChH-HhhhccC--C---cEEechhhccchHHHHhhCc
Confidence 8889999 8766431 2 34568889999999998 74
No 44
>2ivf_B Ethylbenzene dehydrogenase beta-subunit; anaerobic hydrocarbon degradation, MOCO, Fe/S cluster, MO- B enzyme, DMSO reductase family; HET: MES MGD MD1 HEM; 1.88A {Aromatoleum aromaticum}
Probab=35.35 E-value=19 Score=35.02 Aligned_cols=40 Identities=15% Similarity=0.429 Sum_probs=30.0
Q ss_pred hHH--HHHhhCCCceEEeeccCCCceEEEEccCCCCcchhhHHh-cC
Q 018378 288 DAE--KLVKTCPVNVFDIEDIGSGKKRATVAQPRACTLCRECLR-CG 331 (357)
Q Consensus 288 ~a~--~l~~~cp~gV~~i~~~~~g~~~~~V~~~~~ct~crec~r-c~ 331 (357)
+|. .|++.||.|++...... + ..+.+..+|+.|+.|++ |.
T Consensus 153 ~C~~~~Cv~~CP~gAi~~~~~~---g-~v~id~~kCigCg~Cv~aCP 195 (352)
T 2ivf_B 153 HCTNPACLAACPTGAIYKREDN---G-IVLVDQERCKGHRHCVEACP 195 (352)
T ss_dssp CCSSCHHHHHCTTCCEEECTTT---C-CEEECTTTCCCCCHHHHHCT
T ss_pred CcCCccccccCCCCceeecCCC---C-eEEechhhcCCchHHHhhcC
Confidence 355 79999999999875321 2 34457789999999998 74
No 45
>2vpz_B NRFC protein; oxidoreductase, molybdopterin guanine dinucleotide, iron-sulfur, metal-binding, molybdopterin; HET: MGD; 2.40A {Thermus thermophilus} PDB: 2vpx_B* 2vpw_B* 2vpy_B*
Probab=33.14 E-value=29 Score=30.43 Aligned_cols=36 Identities=25% Similarity=0.660 Sum_probs=27.6
Q ss_pred HHHhhCCCceEEeeccCCCceEEEEccCCCCcchhhHHh-cC
Q 018378 291 KLVKTCPVNVFDIEDIGSGKKRATVAQPRACTLCRECLR-CG 331 (357)
Q Consensus 291 ~l~~~cp~gV~~i~~~~~g~~~~~V~~~~~ct~crec~r-c~ 331 (357)
.+++.||.|+|...+. | ..+.+...|+.|..|.. |.
T Consensus 65 ~C~~~CP~gAi~~~~~--g---~~~id~~~CigC~~C~~~CP 101 (195)
T 2vpz_B 65 PCVPVCPTGASYQTKD--G---LVLVDPKKCIACGACIAACP 101 (195)
T ss_dssp TTTTTCSSSCEEECTT--S---CEEECTTTCCCCCHHHHHCT
T ss_pred HHHHhcCCCceecccc--c---ceeecCCCCCCcChhHhhCC
Confidence 5788999999987632 2 34457889999999998 63
No 46
>1rof_A Ferredoxin; electron transport, iron-sulfur; NMR {Thermotoga maritima} SCOP: d.58.1.4 PDB: 1vjw_A
Probab=32.25 E-value=7.7 Score=26.23 Aligned_cols=38 Identities=21% Similarity=0.365 Sum_probs=25.9
Q ss_pred HHHHHhhCCCceEEeeccCCCceEEEEc-cCCCCcchhhHHh-cC
Q 018378 289 AEKLVKTCPVNVFDIEDIGSGKKRATVA-QPRACTLCRECLR-CG 331 (357)
Q Consensus 289 a~~l~~~cp~gV~~i~~~~~g~~~~~V~-~~~~ct~crec~r-c~ 331 (357)
+..++..||. +|.+++. +...+. ++..|+.|..|++ |.
T Consensus 13 C~~C~~~Cp~-~~~~~~~----~~~~~~~~~~~c~~C~~C~~~CP 52 (60)
T 1rof_A 13 CGVCENLCPD-VFQLGDD----GKAKVLQPETDLPCAKDAADSCP 52 (60)
T ss_dssp CCSSTTTCTT-TBCCCSS----SCCCBSCSSCCSTTHHHHHHHCT
T ss_pred ChHHHHhCcH-HHeECCC----CCEeecCchhhHHHHHHHHHhCC
Confidence 4567888996 6666432 233444 3788999999998 64
No 47
>3i9v_3 NADH-quinone oxidoreductase subunit 3; electron transport, respiratory chain, cell flavoprotein, FMN, iron, iron-sulfur, membrane; HET: FMN; 3.10A {Thermus thermophilus} PDB: 2ybb_3* 2fug_3* 3iam_3* 3ias_3* 3m9s_3*
Probab=30.58 E-value=17 Score=38.62 Aligned_cols=56 Identities=13% Similarity=0.117 Sum_probs=34.9
Q ss_pred eeeeceEEEcC-CCChHhHHHHHhhC----CCceEEeeccCCCceEEEE-ccCCCCcchhhHHh-c
Q 018378 272 YRMLPEIVLLE-DVEDEDAEKLVKTC----PVNVFDIEDIGSGKKRATV-AQPRACTLCRECLR-C 330 (357)
Q Consensus 272 Yr~~P~I~i~~-~i~~~~a~~l~~~c----p~gV~~i~~~~~g~~~~~V-~~~~~ct~crec~r-c 330 (357)
+.+.|.|.++. .+. .|.+|++.| +.++|++...+.. ..+.. .++..|++|..|+. |
T Consensus 168 ~~~~p~i~~d~~~CI--~C~~Cv~~C~~~~~~~~i~~~~~g~~-~~i~~~~~~~~C~~CG~Cv~vC 230 (783)
T 3i9v_3 168 HPLSPFVILDRERCI--HCKRCVRYFEEVPGDEVLDFIERGVH-TFIGTMDFGLPSGFSGNITDIC 230 (783)
T ss_dssp EEEETTEEECTTTCC--CCCHHHHHHHHTTCCCCCEECSCTTS-CCEECSSTTCCSTTTTTHHHHC
T ss_pred cCCCccEEEchhhCC--CccHHHHHhhhhcCCceeeeecCCCc-cEEccCCCCCCCccchhHHhhc
Confidence 44567777754 342 477888889 7778877543211 11211 23457999999998 7
No 48
>1h0h_B Formate dehydrogenase (small subunit); tungsten selenium formate dehydrogenase, selenocysteine, molybdopterin, MGD, iron-sulphur cluster; HET: 2MD MGD EPE; 1.8A {Desulfovibrio gigas} SCOP: d.58.1.5
Probab=27.94 E-value=52 Score=29.18 Aligned_cols=43 Identities=21% Similarity=0.513 Sum_probs=0.0
Q ss_pred HHHHHhhCCCceEEeeccCCCceEEEEccCCCCcchh---------hHHh-cCCCcCCcEEEEE
Q 018378 289 AEKLVKTCPVNVFDIEDIGSGKKRATVAQPRACTLCR---------ECLR-CGEEWEKRVSIRR 342 (357)
Q Consensus 289 a~~l~~~cp~gV~~i~~~~~g~~~~~V~~~~~ct~cr---------ec~r-c~~~~~~~V~l~~ 342 (357)
+..++..||.+++.+++.. .+..+|++|. .|+. |..+ +|.++.
T Consensus 113 C~~C~~~CP~~Ai~~~~~~--------~~~~kC~~C~~~~~~G~~p~Cv~~CP~~---Ai~~~~ 165 (214)
T 1h0h_B 113 YESVISACPYDVPRKVAES--------NQMAKCDMCIDRITNGLRPACVTSCPTG---AMNFGD 165 (214)
T ss_dssp HHHHHHHCTTCCCEECTTS--------SCEECCCTTHHHHTTTCCCHHHHHCSSS---CEEEEE
T ss_pred ccHHHHhcCCCCeEecCCC--------cccCcCCCCcchhhcCCChhHHHhcCcc---cEEEcc
No 49
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=24.78 E-value=47 Score=34.41 Aligned_cols=44 Identities=20% Similarity=0.575 Sum_probs=31.3
Q ss_pred CCChHhH-HHHHhhCCCc-----eEEeeccCCCceEEEEccCCCCcchhhHHh-c
Q 018378 283 DVEDEDA-EKLVKTCPVN-----VFDIEDIGSGKKRATVAQPRACTLCRECLR-C 330 (357)
Q Consensus 283 ~i~~~~a-~~l~~~cp~g-----V~~i~~~~~g~~~~~V~~~~~ct~crec~r-c 330 (357)
.+..+.| .+|++.||.. +|.+++. .+++.+. ...|..|.-|++ |
T Consensus 15 ~c~~~~~~~~c~~~cp~~~~~~~~~~~~~~---~~~~~i~-~~~c~~~~~~~~~c 65 (608)
T 3j16_B 15 KCKPKKCRQECKRSCPVVKTGKLCIEVTPT---SKIAFIS-EILCIGCGICVKKC 65 (608)
T ss_dssp SCCHHHHCSHHHHHCHHHHHTCCSEEEETT---TTEEEEC-TTTCCCCCHHHHHC
T ss_pred ccCccccccchhhcCCCccCCceEEEEcCC---CCceEEe-hhhccccccccccC
Confidence 4666655 5799999954 6777543 2466664 467999999998 7
No 50
>1kqf_B FDH-N beta S, formate dehydrogenase, nitrate-inducible, iron-SU subunit; oxidoreductase, selenium, selenocysteine, seCys, molybdenum; HET: MGD HEM CDL; 1.60A {Escherichia coli} SCOP: d.58.1.5 f.23.22.1 PDB: 1kqg_B*
Probab=23.05 E-value=39 Score=31.58 Aligned_cols=36 Identities=25% Similarity=0.490 Sum_probs=27.7
Q ss_pred HHHhhCCC-ceEEeeccCCCceEEEEccCCCCcchhhHHh-cC
Q 018378 291 KLVKTCPV-NVFDIEDIGSGKKRATVAQPRACTLCRECLR-CG 331 (357)
Q Consensus 291 ~l~~~cp~-gV~~i~~~~~g~~~~~V~~~~~ct~crec~r-c~ 331 (357)
.+++.||. |+|...+. | ..+.+..+|+.|..|.+ |.
T Consensus 107 ~C~~~CP~~gAi~~~~~--g---~v~id~~~CigCg~C~~~CP 144 (294)
T 1kqf_B 107 GCLKACPSAGAIIQYAN--G---IVDFQSENCIGCGYCIAGCP 144 (294)
T ss_dssp HHHHHCCSTTSEEEETT--S---CEEECGGGCCCCCHHHHHCT
T ss_pred hhhhhCCccCccccccc--c---ceEeCcccCCCcchhhhcCC
Confidence 68999999 99876532 2 34457788999999998 74
Done!