BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 018379
(357 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1GP5|A Chain A, Anthocyanidin Synthase From Arabidopsis Thaliana Complexed
With Trans-Dihydroquercetin
pdb|1GP6|A Chain A, Anthocyanidin Synthase From Arabidopsis Thaliana Complexed
With Trans-Dihydroquercetin (With 30 Min Exposure To O2)
Length = 356
Score = 174 bits (440), Expect = 8e-44, Method: Compositional matrix adjust.
Identities = 91/267 (34%), Positives = 145/267 (54%), Gaps = 5/267 (1%)
Query: 51 IPIIDIGLLTSPSSSSTQE-LEKLRSALSFWGCFQAINYHGIEPEFLDKMGEVGKQFFDF 109
+P ID+ + S + +E+L+ A WG IN HGI + ++++ + G++FF
Sbjct: 47 VPTIDLKNIESDDEKIRENCIEELKKASLDWGVMHLIN-HGIPADLMERVKKAGEEFFSL 105
Query: 110 PPETKHKYS--RKDGSTEGYGSDIIIAEEQTLDWTDRLFLTTSPKDQRQLKFWPEIPESF 167
E K KY+ + G +GYGS + L+W D F P+++R L WP+ P +
Sbjct: 106 SVEEKEKYANDQATGKIQGYGSKLANNASGQLEWEDYFFHLAYPEEKRDLSIWPKTPSDY 165
Query: 168 RETLHEYTTELEKLNEILLKAMAMCLNLEENCFLDMYGEKENATMIARFNFYPPCPRPDL 227
E EY L L + KA+++ L LE + G E + + N+YP CP+P+L
Sbjct: 166 IEATSEYAKCLRLLATKVFKALSVGLGLEPDRLEKEVGGLEELLLQMKINYYPKCPQPEL 225
Query: 228 VIGVKPHADASAFTYLLQDKQVEGLQFLKDNQWYRVPLNPEALVINAGDYAEIMSNGIFK 287
+GV+ H D SA T++L + V GLQ + +W P+++V++ GD EI+SNG +K
Sbjct: 226 ALGVEAHTDVSALTFILHN-MVPGLQLFYEGKWVTAKCVPDSIVMHIGDTLEILSNGKYK 284
Query: 288 SPVHRAVTNSERKRMSLAVFCIPNPDR 314
S +HR + N E+ R+S AVFC P D+
Sbjct: 285 SILHRGLVNKEKVRISWAVFCEPPKDK 311
>pdb|2BRT|A Chain A, Anthocyanidin Synthase From Arabidopsis Thaliana Complexed
With Naringenin
Length = 355
Score = 174 bits (440), Expect = 8e-44, Method: Compositional matrix adjust.
Identities = 91/267 (34%), Positives = 145/267 (54%), Gaps = 5/267 (1%)
Query: 51 IPIIDIGLLTSPSSSSTQE-LEKLRSALSFWGCFQAINYHGIEPEFLDKMGEVGKQFFDF 109
+P ID+ + S + +E+L+ A WG IN HGI + ++++ + G++FF
Sbjct: 46 VPTIDLKNIESDDEKIRENCIEELKKASLDWGVMHLIN-HGIPADLMERVKKAGEEFFSL 104
Query: 110 PPETKHKYS--RKDGSTEGYGSDIIIAEEQTLDWTDRLFLTTSPKDQRQLKFWPEIPESF 167
E K KY+ + G +GYGS + L+W D F P+++R L WP+ P +
Sbjct: 105 SVEEKEKYANDQATGKIQGYGSKLANNASGQLEWEDYFFHLAYPEEKRDLSIWPKTPSDY 164
Query: 168 RETLHEYTTELEKLNEILLKAMAMCLNLEENCFLDMYGEKENATMIARFNFYPPCPRPDL 227
E EY L L + KA+++ L LE + G E + + N+YP CP+P+L
Sbjct: 165 IEATSEYAKCLRLLATKVFKALSVGLGLEPDRLEKEVGGLEELLLQMKINYYPKCPQPEL 224
Query: 228 VIGVKPHADASAFTYLLQDKQVEGLQFLKDNQWYRVPLNPEALVINAGDYAEIMSNGIFK 287
+GV+ H D SA T++L + V GLQ + +W P+++V++ GD EI+SNG +K
Sbjct: 225 ALGVEAHTDVSALTFILHN-MVPGLQLFYEGKWVTAKCVPDSIVMHIGDTLEILSNGKYK 283
Query: 288 SPVHRAVTNSERKRMSLAVFCIPNPDR 314
S +HR + N E+ R+S AVFC P D+
Sbjct: 284 SILHRGLVNKEKVRISWAVFCEPPKDK 310
>pdb|1GP4|A Chain A, Anthocyanidin Synthase From Arabidopsis Thaliana
(Selenomethionine Substituted)
Length = 356
Score = 171 bits (433), Expect = 6e-43, Method: Compositional matrix adjust.
Identities = 91/267 (34%), Positives = 143/267 (53%), Gaps = 5/267 (1%)
Query: 51 IPIIDIGLLTSPSSSSTQE-LEKLRSALSFWGCFQAINYHGIEPEFLDKMGEVGKQFFDF 109
+P ID+ + S + +E+L+ A WG IN HGI + +++ + G++FF
Sbjct: 47 VPTIDLKNIESDDEKIRENCIEELKKASLDWGVXHLIN-HGIPADLXERVKKAGEEFFSL 105
Query: 110 PPETKHKYS--RKDGSTEGYGSDIIIAEEQTLDWTDRLFLTTSPKDQRQLKFWPEIPESF 167
E K KY+ + G +GYGS + L+W D F P+++R L WP+ P +
Sbjct: 106 SVEEKEKYANDQATGKIQGYGSKLANNASGQLEWEDYFFHLAYPEEKRDLSIWPKTPSDY 165
Query: 168 RETLHEYTTELEKLNEILLKAMAMCLNLEENCFLDMYGEKENATMIARFNFYPPCPRPDL 227
E EY L L + KA+++ L LE + G E + + N+YP CP+P+L
Sbjct: 166 IEATSEYAKCLRLLATKVFKALSVGLGLEPDRLEKEVGGLEELLLQXKINYYPKCPQPEL 225
Query: 228 VIGVKPHADASAFTYLLQDKQVEGLQFLKDNQWYRVPLNPEALVINAGDYAEIMSNGIFK 287
+GV+ H D SA T++L + V GLQ + +W P+++V + GD EI+SNG +K
Sbjct: 226 ALGVEAHTDVSALTFILHN-XVPGLQLFYEGKWVTAKCVPDSIVXHIGDTLEILSNGKYK 284
Query: 288 SPVHRAVTNSERKRMSLAVFCIPNPDR 314
S +HR + N E+ R+S AVFC P D+
Sbjct: 285 SILHRGLVNKEKVRISWAVFCEPPKDK 311
>pdb|1W9Y|A Chain A, The Structure Of Acc Oxidase
pdb|1WA6|X Chain X, The Structure Of Acc Oxidase
Length = 319
Score = 148 bits (373), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 95/297 (31%), Positives = 140/297 (47%), Gaps = 15/297 (5%)
Query: 50 DIPIIDIGLLTSPSSSSTQELEKLRSALSFWGCFQAINYHGIEPEFLDKMGEVGKQFFDF 109
+ PII + + ++T E ++ A WG F+ +N HGI E D + + K +
Sbjct: 3 NFPIISLDKVNGVERAATXE--XIKDACENWGFFELVN-HGIPREVXDTVEKXTKGHYKK 59
Query: 110 PPETKHKYSRKDGSTEGYGSDIIIAEEQTLDWTDRLFLTTSPKDQRQLKFWPEIPESFRE 169
E + K + EG + AE DW FL P + P++ E +RE
Sbjct: 60 CXEQRFKELVASKALEG-----VQAEVTDXDWESTFFLKHLP--ISNISEVPDLDEEYRE 112
Query: 170 TLHEYTTELEKLNEILLKAMAMCLNLEENCFLDMYGEKENATMIARFNFYPPCPRPDLVI 229
++ LEKL E LL + L LE+ + + + + + YPPCP+PDL+
Sbjct: 113 VXRDFAKRLEKLAEELLDLLCENLGLEKGYLKNAFYGSKGPNFGTKVSNYPPCPKPDLIK 172
Query: 230 GVKPHADASAFTYLLQDKQVEGLQFLKDNQWYRVPLNPEALVINAGDYAEIMSNGIFKSP 289
G++ H DA L QD +V GLQ LKD QW VP ++V+N GD E+++NG +KS
Sbjct: 173 GLRAHTDAGGIILLFQDDKVSGLQLLKDGQWIDVPPXRHSIVVNLGDQLEVITNGKYKSV 232
Query: 290 VHRAVTNSERKRMSLAVFCIPNPDREIEPVNGVVN---EARPRLYKK--VKDYVSLY 341
HR + + R SLA F P D I P +V E ++Y K DY LY
Sbjct: 233 XHRVIAQKDGARXSLASFYNPGSDAVIYPAPALVEKEAEENKQVYPKFVFDDYXKLY 289
>pdb|3OOX|A Chain A, Crystal Structure Of A Putative 2og-Fe(Ii) Oxygenase
Family Protein (Cc_0200) From Caulobacter Crescentus At
1.44 A Resolution
pdb|3OOX|B Chain B, Crystal Structure Of A Putative 2og-Fe(Ii) Oxygenase
Family Protein (Cc_0200) From Caulobacter Crescentus At
1.44 A Resolution
Length = 312
Score = 77.0 bits (188), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 77/283 (27%), Positives = 118/283 (41%), Gaps = 28/283 (9%)
Query: 67 TQELEKLRSALSFWGCFQAINYHGIEPEFLDKMGEVGKQFFDFPPETKHKYSRKDGSTEG 126
T+ ++L ++ +G F ++ + ++ +D + K FF P ETK +Y+ G G
Sbjct: 20 TRFAQELGASFERYG-FAVLSDYDLDQARIDAAVDSAKAFFALPVETKKQYAGVKGGARG 78
Query: 127 YGSDIIIAEEQTLDWTDRLFLTTSPKDQRQL------------KFWP-EIPESFRETLHE 173
Y I +T D L R L WP EIP +F+ +
Sbjct: 79 Y----IPFGVETAKGADHYDLKEFWHXGRDLPPGHRFRAHXADNVWPAEIP-AFKHDVSW 133
Query: 174 YTTELEKLNEILLKAMAMCLNLEENCFLDMYGEKENATMIARFNFYPPCPRPDLVIGVKP 233
L+ +L+A+A L LE + F ++ + R YPP P+ +
Sbjct: 134 LYNSLDGXGGKVLEAIATYLKLERDFFKPTV---QDGNSVLRLLHYPPIPKDATGVRAGA 190
Query: 234 HADASAFTYLLQDKQVEGLQFL-KDNQWYRVPLNPEALVINAGDYAEIMSNGIFKSPVHR 292
H D + T LL ++ GL+ L +D QW + P LVIN GD E ++N + S VHR
Sbjct: 191 HGDINTITLLLGAEE-GGLEVLDRDGQWLPINPPPGCLVINIGDXLERLTNNVLPSTVHR 249
Query: 293 AVT-NSERK---RMSLAVFCIPNPDREIEPVNGVVNEARPRLY 331
V ER+ R S F D EI+ + V P Y
Sbjct: 250 VVNPPPERRGVPRYSTPFFLHFASDYEIKTLQNCVTAENPDRY 292
>pdb|2BJS|A Chain A, Isopenicillin N Synthase C-Terminal Truncation Mutant
Length = 325
Score = 57.8 bits (138), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 69/304 (22%), Positives = 129/304 (42%), Gaps = 34/304 (11%)
Query: 44 ASLPLMDIPIIDIG-LLTSPSSSSTQELEKLRSALSFWGCFQAINYHGIEPEFLDKMGEV 102
S+ ++P ID+ L ++ + +++ +A G F A+N HGI + ++ +
Sbjct: 2 GSVSKANVPKIDVSPLFGDDQAAKMRVAQQIDAASRDTGFFYAVN-HGIN---VQRLSQK 57
Query: 103 GKQF-FDFPPETK-------HKYSRKDGSTEGYGSDIIIAEE-QTLDWTDRLFLTTSPKD 153
K+F PE K + +D GY I + ++ + + F P+
Sbjct: 58 TKEFHMSITPEEKWDLAIRAYNKEHQDQVRAGYYLSIPGKKAVESFCYLNPNFTPDHPRI 117
Query: 154 Q-----RQLKFWPEIPE--SFRETLHEYTTELEKLNEILLKAMAMCLNLEENCFLDMYGE 206
Q ++ WP+ + F++ +Y ++ L+ LLK A+ L EEN F +
Sbjct: 118 QAKTPTHEVNVWPDETKHPGFQDFAEQYYWDVFGLSSALLKGYALALGKEENFFARHFKP 177
Query: 207 KEN--ATMIARFNFYPPCPRPDLV-------IGVKPHADASAFTYLLQDKQVEGLQFLKD 257
+ + ++ R+ + P P + + + H D S T L Q V+ LQ
Sbjct: 178 DDTLASVVLIRYPYLDPYPEAAIKTAADGTKLSFEWHEDVSLITVLYQ-SNVQNLQVETA 236
Query: 258 NQWYRVPLNPEALVINAGDYAEIMSNGIFKSPVHRA-VTNSERKRMSLAVFCIPNPDREI 316
+ + + +IN G Y ++N +K+P+HR N+ER+ SL F D I
Sbjct: 237 AGYQDIEADDTGYLINCGSYMAHLTNNYYKAPIHRVKWVNAERQ--SLPFFVNLGYDSVI 294
Query: 317 EPVN 320
+P +
Sbjct: 295 DPFD 298
>pdb|1IPS|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(Manganese Complex)
pdb|1IPS|B Chain B, Isopenicillin N Synthase From Aspergillus Nidulans
(Manganese Complex)
pdb|1QJE|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans (Ip1 -
Fe Complex)
pdb|1QJF|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(Monocyclic Sulfoxide - Fe Complex)
pdb|1QIQ|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans (Acmc
Fe Complex)
pdb|1HB4|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans (Oxygen
Exposed Product From Anaerobic Acov Fe Complex)
pdb|1HB3|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans (Oxygen
Exposed Product From Anaerobic Acov Fe Complex)
pdb|1HB2|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans (Oxygen
Exposed Product From Anaerobic Acov Fe Complex)
pdb|1HB1|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(Anaerobic Acov Fe Complex)
pdb|1ODM|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(anaerobic Ac-vinylglycine Fe Complex)
pdb|1ODN|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(Oxygen-Exposed Product From Anaerobic Ac-Vinylglycine
Fe Complex)
pdb|1OBN|A Chain A, Isopenicillin N Synthase
Aminoadipoyl-cysteinyl-aminobutyrate-fe-no Complex
pdb|1OC1|A Chain A, Isopenicillin N Synthase
Aminoadipoyl-cysteinyl-aminobutyrate-fe Complex
pdb|1UZW|A Chain A, Isopenicillin N Synthase With
L-D-(A-Aminoadipoyl)-L-Cysteinyl-D-Isodehydrovaline
pdb|1W03|A Chain A, Isopenicillin N Synthase Aminoadipoyl-Cysteinyl-Glycine-Fe
Complex
pdb|1W04|A Chain A, Isopenicillin N Synthase
Aminoadipoyl-Cysteinyl-Glycine-Fe-No Complex
pdb|1W05|A Chain A, Isopenicillin N Synthase Aminoadipoyl-Cysteinyl-Alanine-Fe
Complex
pdb|1W06|A Chain A, Isopenicillin N Synthase Aminoadipoyl-Cysteinyl-Alanine-Fe
No Complex
pdb|2BU9|A Chain A, Isopenicillin N Synthase Complexed With L-Aminoadipoyl-L-
Cysteinyl-L-Hexafluorovaline
pdb|1W3V|A Chain A, Isopenicillin N Synthase
D-(L-A-Aminoadipoyl)-(3r)-Methyl-L- Cysteine
D-A-Hydroxyisovaleryl Ester Complex (Anaerobic)
pdb|1W3X|A Chain A, Isopenicillin N Synthase
D-(L-A-Aminoadipoyl)-(3r)-Methyl-L- Cysteine
D-A-Hydroxyisovaleryl Ester Complex (Oxygen Exposed 5
Minutes 20 Bar)
pdb|2IVI|B Chain B, Isopenicillin N Synthase From Aspergillus Nidulans
(anaerobic Ac-methyl-cyclopropylglycine Fe Complex)
pdb|2IVJ|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(Anaerobic Ac-Cyclopropylglycine Fe Complex)
pdb|1BK0|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans (Acv-Fe
Complex)
pdb|1BLZ|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(Acv-Fe- No Complex)
pdb|2JB4|A Chain A, Isopenicillin N Synthase With A 2-Thiabicycloheptan-6-One
Product Analogue
pdb|2VAU|A Chain A, Isopenicillin N Synthase With Substrate Analogue Acomp (
Unexposed)
pdb|2VBB|A Chain A, Isopenicillin N Synthase With Substrate Analogue Acomp (
35minutes Oxygen Exposure)
pdb|2VBD|A Chain A, Isopenicillin N Synthase With Substrate Analogue L,l,l-
Acomp (unexposed)
pdb|2VBP|A Chain A, Isopenicillin N Synthase With Substrate Analogue
L,L,L-Acab (Unexposed)
pdb|2VCM|A Chain A, Isopenicillin N Synthase With Substrate Analogue Asmcov
pdb|2VE1|A Chain A, Isopenicillin N Synthase With Substrate Analogue Asmcov (
Oxygen Exposed 1min 20bar)
pdb|2WO7|A Chain A, Isopenicillin N Synthase With Substrate Analogue L,L,D-
Acd2ab (Unexposed)
pdb|2Y6F|A Chain A, Isopenicillin N Synthase With
Ac-D-S-Methyl-3r-Methylcysteine
pdb|2Y60|A Chain A, Isopenicillin N Synthase With Ac-D-Methionine
pdb|2Y86|A Chain A, Isopenicillin N Synthase With Ac-O-Methyl-D-Threonine
pdb|3ZKU|A Chain A, Isopenicillin N Synthase With Substrate Analogue Ahcv
Length = 331
Score = 57.8 bits (138), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 69/304 (22%), Positives = 129/304 (42%), Gaps = 34/304 (11%)
Query: 44 ASLPLMDIPIIDIG-LLTSPSSSSTQELEKLRSALSFWGCFQAINYHGIEPEFLDKMGEV 102
S+ ++P ID+ L ++ + +++ +A G F A+N HGI + ++ +
Sbjct: 2 GSVSKANVPKIDVSPLFGDDQAAKMRVAQQIDAASRDTGFFYAVN-HGIN---VQRLSQK 57
Query: 103 GKQF-FDFPPETK-------HKYSRKDGSTEGYGSDIIIAEE-QTLDWTDRLFLTTSPKD 153
K+F PE K + +D GY I + ++ + + F P+
Sbjct: 58 TKEFHMSITPEEKWDLAIRAYNKEHQDQVRAGYYLSIPGKKAVESFCYLNPNFTPDHPRI 117
Query: 154 Q-----RQLKFWPEIPE--SFRETLHEYTTELEKLNEILLKAMAMCLNLEENCFLDMYGE 206
Q ++ WP+ + F++ +Y ++ L+ LLK A+ L EEN F +
Sbjct: 118 QAKTPTHEVNVWPDETKHPGFQDFAEQYYWDVFGLSSALLKGYALALGKEENFFARHFKP 177
Query: 207 KEN--ATMIARFNFYPPCPRPDLV-------IGVKPHADASAFTYLLQDKQVEGLQFLKD 257
+ + ++ R+ + P P + + + H D S T L Q V+ LQ
Sbjct: 178 DDTLASVVLIRYPYLDPYPEAAIKTAADGTKLSFEWHEDVSLITVLYQ-SNVQNLQVETA 236
Query: 258 NQWYRVPLNPEALVINAGDYAEIMSNGIFKSPVHRA-VTNSERKRMSLAVFCIPNPDREI 316
+ + + +IN G Y ++N +K+P+HR N+ER+ SL F D I
Sbjct: 237 AGYQDIEADDTGYLINCGSYMAHLTNNYYKAPIHRVKWVNAERQ--SLPFFVNLGYDSVI 294
Query: 317 EPVN 320
+P +
Sbjct: 295 DPFD 298
>pdb|3ON7|A Chain A, Crystal Structure Of A Putative Oxygenase (So_2589) From
Shewanella Oneidensis At 2.20 A Resolution
pdb|3ON7|B Chain B, Crystal Structure Of A Putative Oxygenase (So_2589) From
Shewanella Oneidensis At 2.20 A Resolution
pdb|3ON7|C Chain C, Crystal Structure Of A Putative Oxygenase (So_2589) From
Shewanella Oneidensis At 2.20 A Resolution
pdb|3ON7|D Chain D, Crystal Structure Of A Putative Oxygenase (So_2589) From
Shewanella Oneidensis At 2.20 A Resolution
Length = 280
Score = 48.5 bits (114), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 60/261 (22%), Positives = 109/261 (41%), Gaps = 27/261 (10%)
Query: 63 SSSSTQELEKLRSALSFWGCFQAINYHGIEPEFLDKMGEVGKQFFDFPPETKHKYSRKDG 122
+ S+ + +E LR F ++ H I+ E ++++ + FF+ E K+++
Sbjct: 12 ADSAKRFVESLRET-----GFGVLSNHPIDKELVERIYTEWQAFFN--SEAKNEFXFNRE 64
Query: 123 STEGYGSDIIIAEEQTLDWTDRLFLTTSPKDQRQLKFWPEIPESFRETLHEYTTELEKLN 182
+ +G+ ++ T + K+ + W IP+S R + Y + L
Sbjct: 65 THDGFFP-------ASISETAKGHTVKDIKEYYHVYPWGRIPDSLRANILAYYEKANTLA 117
Query: 183 EILLKAMAMC----LNLEENCFLDMYGEKENATMIARFNFYPPCPRPD--LVIGVKPHAD 236
LL+ + + + + L + T++ R YPP + I H D
Sbjct: 118 SELLEWIETYSPDEIKAKFSIPLPEXIANSHKTLL-RILHYPPXTGDEEXGAIRAAAHED 176
Query: 237 ASAFTYLLQDKQVEGLQF-LKDNQWYRVPLNPEALVINAGDYAEIMSNGIFKSPVHRAV- 294
+ T +L GLQ KD W VP + ++IN GD + S+G F S HR +
Sbjct: 177 INLIT-VLPTANEPGLQVKAKDGSWLDVPSDFGNIIINIGDXLQEASDGYFPSTSHRVIN 235
Query: 295 ---TNSERKRMSLAVFCIPNP 312
T+ + R+SL +F P+P
Sbjct: 236 PEGTDKTKSRISLPLFLHPHP 256
>pdb|1E5I|A Chain A, Delta-R306 Deacetoxycephalosporin C Synthase Complexed
With Iron And 2-Oxoglutarate
Length = 306
Score = 36.6 bits (83), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 28/113 (24%), Positives = 46/113 (40%), Gaps = 12/113 (10%)
Query: 213 IARFNFYPPCPR----PDLVIGVKPHADASAFTYLLQDKQVEG---LQFLKDNQWYRVPL 265
+ RF ++P P + + + PH D S T + Q G LQ + +P
Sbjct: 158 LLRFRYFPQVPEHRSAEEQPLRMAPHYDLSMVTLIQQTPCANGFVSLQAEVGGAFTDLPY 217
Query: 266 NPEALVINAGDYAEIMSNGIFKSPVHRAVTN-----SERKRMSLAVFCIPNPD 313
P+A+++ G A +++ G K+P H + R S F PN D
Sbjct: 218 RPDAVLVFCGAIATLVTGGQVKAPRHHVAAPRRDQIAGSSRTSSVFFLRPNAD 270
>pdb|1UNB|A Chain A, Deacetoxycephalosporin C Synthase Complexed With
2-Oxoglutarate And Ampicillin
pdb|1UO9|A Chain A, Deacetoxycephalosporin C Synthase Complexed With Succinate
pdb|1UOB|A Chain A, Deacetoxycephalosporin C Synthase Complexed With
2-Oxoglutarate And Penicillin G
pdb|1UOF|A Chain A, Deacetoxycephalosporin C Synthase Complexed With
Penicillin G
pdb|1UOG|A Chain A, Deacetoxycephalosporin C Synthase Complexed With
Deacetoxycephalosporin C
pdb|1DCS|A Chain A, Deacetoxycephalosporin C Synthase From S. Clavuligerus
pdb|1RXF|A Chain A, Deacetoxycephalosporin C Synthase Complexed With Fe(Ii)
pdb|1RXG|A Chain A, Deacetoxycephalosporin C Synthase Complexed With Fe(Ii)
And 2- Oxoglutarate
pdb|2JB8|A Chain A, Deacetoxycephalosporin C Synthase Complexed With
5-hydroxy- 4-keto Valeric Acid
Length = 311
Score = 36.6 bits (83), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 28/113 (24%), Positives = 45/113 (39%), Gaps = 12/113 (10%)
Query: 213 IARFNFYPPCPRPDLV----IGVKPHADASAFTYLLQDKQVEG---LQFLKDNQWYRVPL 265
+ RF ++P P + + PH D S T + Q G LQ + +P
Sbjct: 158 LLRFRYFPQVPEHRSAEEQPLRMAPHYDLSMVTLIQQTPCANGFVSLQAEVGGAFTDLPY 217
Query: 266 NPEALVINAGDYAEIMSNGIFKSPVHRAVTN-----SERKRMSLAVFCIPNPD 313
P+A+++ G A +++ G K+P H + R S F PN D
Sbjct: 218 RPDAVLVFCGAIATLVTGGQVKAPRHHVAAPRRDQIAGSSRTSSVFFLRPNAD 270
>pdb|1E5H|A Chain A, Delta-R307a Deacetoxycephalosporin C Synthase Complexed
With Succinate And Carbon Dioxide
Length = 308
Score = 36.6 bits (83), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 28/113 (24%), Positives = 45/113 (39%), Gaps = 12/113 (10%)
Query: 213 IARFNFYPPCPRPDLV----IGVKPHADASAFTYLLQDKQVEG---LQFLKDNQWYRVPL 265
+ RF ++P P + + PH D S T + Q G LQ + +P
Sbjct: 158 LLRFRYFPQVPEHRSAEEQPLRMAPHYDLSMVTLIQQTPCANGFVSLQAEVGGAFTDLPY 217
Query: 266 NPEALVINAGDYAEIMSNGIFKSPVHRAVTN-----SERKRMSLAVFCIPNPD 313
P+A+++ G A +++ G K+P H + R S F PN D
Sbjct: 218 RPDAVLVFCGAIATLVTGGQVKAPRHHVAAPRRDQIAGSSRTSSVFFLRPNAD 270
>pdb|1W28|A Chain A, Conformational Flexibility Of The C-Terminus With
Implications For Substrate Binding And Catalysis In A
New Crystal Form Of Deacetoxycephalosporin C Synthase
pdb|1W2A|X Chain X, Deacetoxycephalosporin C Synthase (With His-Tag) Complexed
With Fe(Ii) And Ethylene Glycol
pdb|1W2N|A Chain A, Deacetoxycephalosporin C Synthase (With A N-Terminal His-
Tag) In Complex With Fe(Ii) And Ampicillin
pdb|1W2O|A Chain A, Deacetoxycephalosporin C Synthase (With A N-Terminal His-
Tag) In Complex With Fe(Ii) And Deacetoxycephalosporin C
Length = 331
Score = 36.6 bits (83), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 28/113 (24%), Positives = 45/113 (39%), Gaps = 12/113 (10%)
Query: 213 IARFNFYPPCPRPDLV----IGVKPHADASAFTYLLQDKQVEG---LQFLKDNQWYRVPL 265
+ RF ++P P + + PH D S T + Q G LQ + +P
Sbjct: 178 LLRFRYFPQVPEHRSAEEQPLRMAPHYDLSMVTLIQQTPCANGFVSLQAEVGGAFTDLPY 237
Query: 266 NPEALVINAGDYAEIMSNGIFKSPVHRAVTN-----SERKRMSLAVFCIPNPD 313
P+A+++ G A +++ G K+P H + R S F PN D
Sbjct: 238 RPDAVLVFCGAIATLVTGGQVKAPRHHVAAPRRDQIAGSSRTSSVFFLRPNAD 290
>pdb|1HJF|A Chain A, Alteration Of The Co-Substrate Selectivity Of
Deacetoxycephalosporin C Synthase: The Role Of
Arginine-258
pdb|1HJG|A Chain A, Alteration Of The Co-Substrate Selectivity Of
Deacetoxycephalosporin C Synthase: The Role Of
Arginine-258
Length = 311
Score = 34.7 bits (78), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 27/113 (23%), Positives = 46/113 (40%), Gaps = 12/113 (10%)
Query: 213 IARFNFYPPCPR----PDLVIGVKPHADASAFTYLLQDKQVEG---LQFLKDNQWYRVPL 265
+ RF ++P P + + + PH D S T + Q G LQ + +P
Sbjct: 158 LLRFRYFPQVPEHRSAEEQPLRMAPHYDLSMVTLIQQTPCANGFVSLQAEVGGAFTDLPY 217
Query: 266 NPEALVINAGDYAEIMSNGIFKSPVHRAVTN-----SERKRMSLAVFCIPNPD 313
P+A+++ G A +++ G K+P H + + S F PN D
Sbjct: 218 RPDAVLVFCGAIATLVTGGQVKAPRHHVAAPRRDQIAGSSQTSSVFFLRPNAD 270
>pdb|3REO|A Chain A, Monolignol O-Methyltransferase (Momt)
pdb|3REO|B Chain B, Monolignol O-Methyltransferase (Momt)
pdb|3REO|C Chain C, Monolignol O-Methyltransferase (Momt)
pdb|3REO|D Chain D, Monolignol O-Methyltransferase (Momt)
pdb|3TKY|A Chain A, Monolignol O-Methyltransferase (Momt)
pdb|3TKY|B Chain B, Monolignol O-Methyltransferase (Momt)
pdb|3TKY|C Chain C, Monolignol O-Methyltransferase (Momt)
pdb|3TKY|D Chain D, Monolignol O-Methyltransferase (Momt)
Length = 368
Score = 29.3 bits (64), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 15/51 (29%), Positives = 22/51 (43%), Gaps = 3/51 (5%)
Query: 192 CLNLEENCFLDMYGEKENATMIARFNFYPPCPRPDLVIGVKPHADASAFTY 242
CL L +NC+ + ++ +I PP P P + V H DA Y
Sbjct: 279 CLKLLKNCYAAL---PDHGKVIVAEYILPPSPDPSIATKVVIHTDALMLAY 326
>pdb|2WAC|A Chain A, Extended Tudor Domain Of Drosophila Melanogaster Tudor-Sn
( P100)
pdb|2WAC|B Chain B, Extended Tudor Domain Of Drosophila Melanogaster Tudor-Sn
( P100)
Length = 218
Score = 28.1 bits (61), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 26/97 (26%), Positives = 40/97 (41%), Gaps = 13/97 (13%)
Query: 232 KPHADAS-----AFTYLLQDKQVEGLQFLKDNQWYRVPL------NPEALVINAGDYAEI 280
K HAD A +Y + + QF DNQWYR + N L I+ G+ +
Sbjct: 35 KLHADFQSNPPIAGSYTPKRGDLVAAQFTLDNQWYRAKVERVQGSNATVLYIDYGNKETL 94
Query: 281 MSNGIFKSPVHRAVTNSERKRMSLAVFCIP--NPDRE 315
+N + P + +LA+ +P N D+E
Sbjct: 95 PTNRLAALPPAFSSEKPYATEYALALVALPTDNEDKE 131
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.135 0.398
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,029,123
Number of Sequences: 62578
Number of extensions: 477771
Number of successful extensions: 1381
Number of sequences better than 100.0: 17
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 1362
Number of HSP's gapped (non-prelim): 17
length of query: 357
length of database: 14,973,337
effective HSP length: 100
effective length of query: 257
effective length of database: 8,715,537
effective search space: 2239893009
effective search space used: 2239893009
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 52 (24.6 bits)