Query 018380
Match_columns 357
No_of_seqs 122 out of 441
Neff 8.2
Searched_HMMs 46136
Date Fri Mar 29 08:32:06 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018380.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/018380hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4160 BPI/LBP/CETP family pr 100.0 3.7E-52 8.1E-57 414.7 37.8 340 1-344 136-487 (492)
2 PF02886 LBP_BPI_CETP_C: LBP / 100.0 3.1E-50 6.7E-55 368.1 23.0 233 104-339 1-238 (238)
3 smart00329 BPI2 BPI/LBP/CETP C 100.0 1.9E-44 4.2E-49 321.2 27.2 197 139-335 1-202 (202)
4 cd00026 BPI2 BPI/LBP/CETP C-te 100.0 8.6E-44 1.9E-48 316.4 26.0 197 142-338 1-200 (200)
5 smart00328 BPI1 BPI/LBP/CETP N 99.9 9.8E-24 2.1E-28 191.2 12.9 119 1-119 104-225 (225)
6 cd00025 BPI1 BPI/LBP/CETP N-te 99.9 4.9E-23 1.1E-27 186.3 13.1 113 2-115 109-223 (223)
7 cd00264 BPI BPI/LBP/CETP domai 99.9 1.2E-21 2.6E-26 175.4 18.9 193 142-337 1-207 (208)
8 PF01273 LBP_BPI_CETP: LBP / B 99.4 1.4E-12 3.1E-17 112.3 9.7 70 2-71 93-163 (164)
9 cd00264 BPI BPI/LBP/CETP domai 99.3 2.4E-11 5.3E-16 108.6 11.2 103 2-113 105-208 (208)
10 PF14613 DUF4449: Protein of u 93.3 0.3 6.6E-06 41.8 6.7 56 25-80 2-58 (164)
11 smart00700 JHBP Juvenile hormo 86.3 8.4 0.00018 34.6 10.4 70 13-82 142-220 (225)
12 PF06585 JHBP: Haemolymph juve 80.4 12 0.00025 34.0 8.9 71 12-82 168-245 (248)
13 PF14356 DUF4403: Domain of un 54.5 1.1E+02 0.0024 30.4 10.2 66 12-78 315-384 (427)
14 TIGR02610 PHA_gran_rgn putativ 53.0 47 0.001 25.5 5.6 47 15-61 42-90 (91)
15 PF09650 PHA_gran_rgn: Putativ 41.5 43 0.00093 25.4 3.8 29 32-60 58-86 (87)
16 KOG0894 Ubiquitin-protein liga 31.6 31 0.00066 30.8 1.8 101 88-196 34-162 (244)
17 smart00709 Zpr1 Duplicated dom 23.8 2.3E+02 0.0051 24.1 5.8 34 4-37 54-89 (160)
No 1
>KOG4160 consensus BPI/LBP/CETP family protein [Defense mechanisms]
Probab=100.00 E-value=3.7e-52 Score=414.66 Aligned_cols=340 Identities=30% Similarity=0.481 Sum_probs=306.2
Q ss_pred CeeeeEEEee-C-CCCcEEEEeeeceeeeccEEEEEcCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhhc
Q 018380 1 MQVGLTLGLE-T-QKGTLKLSLVDCGCYVKDISIKLDGGASWLYQGMINAFEEQIVSAVENAITKKLKEGI-SKLDSLLQ 77 (357)
Q Consensus 1 ~~~~~~~~l~-~-~~G~p~v~~~~C~~~i~~~~v~~~gg~s~l~n~f~~~~~~~i~~~l~~~ic~~i~~~i-~~ln~~L~ 77 (357)
|+..+.+.+. + .+|+|.++...|++.++++++++++-.+|+++.|.+.+++.||+.++.++|+.+.+.+ .++|.+++
T Consensus 136 ~~~~~~~~~~~~~~~~~~~v~~~~C~~~~~~l~~~~~~~~~~l~~~~~~~~~~~i~~~~~~~~c~~~~~~~~~~~~~~l~ 215 (492)
T KOG4160|consen 136 MDIQINLSLGSDIGDGKPAVSDSSCSAAISDLHVQMGSLASWLIQLFLNAISDNIRSVLESQICKKIRASVNGDLNSFLQ 215 (492)
T ss_pred ceEEEeeeeeccCCCCcceeeeecceeEeeeeEeecCCCcHHHHHHHHHHHHHHHHHHHhhhhcHHHHhhhchhhhhhhc
Confidence 3445555555 4 7899999999999999999999885599999999999999999999999999999999 58999999
Q ss_pred cCcccccccceEEEEEeecCCCeeecceeeeeeeeEEEc-CCCCCCCCCCCCCCCCCC-CCCCCCCeEEEEechhHHHHH
Q 018380 78 SLPKEIPVDDHASLNITFVDNPLLTSSSIEFDINGLFTA-RKKASIPNYYNSNLQPPV-FCSDQSKMLGISLDEAVLNSA 155 (357)
Q Consensus 78 ~lp~~~~~~~~~~ldysl~~~P~it~~~i~~~l~G~~~~-~~~~~~~p~~~~~~p~~~-~~~~~~~M~~i~lS~y~~NS~ 155 (357)
++|+..++|+.+.+||+++++|.+|+++++++++|++++ .++...+ +..|... .++++++|+++++|||++||+
T Consensus 216 ~~~~~~~~d~~~~Idysl~~~P~~t~~~i~l~~~G~i~~~~~~~~~~----~~~p~~~~~~~~~~~Mi~i~vSe~v~nSl 291 (492)
T KOG4160|consen 216 TLPVSISVDSNAGIDYSLLGPPAITSSYIELDLKGEIFYSLGQVTPP----FPLPIVSPTPLSNSRMIYIYVSEYVFNSL 291 (492)
T ss_pred cCCcceecccccceeeEeccCCceecceEEEeeeeeEEeccCCCCCc----ccCCcccccCCCCCceEEEEEhhhhhhHH
Confidence 999999999999999999999999999999999999999 5554433 3333332 334468999999999999999
Q ss_pred HHHHHhcCcceEEe-c-cCCCCC--Ccchhh--HhhhcHHHHhhCCCCceEEEEeeCCCCeEEEEeCcEEEEEEEEEEEE
Q 018380 156 SALYYDAEFMQWTV-D-KVPDQS--LLNTAG--WRFIIPQLYRKYPNDDMNLNISLSSPPVIRVAEDNIDATVHADLIID 229 (357)
Q Consensus 156 l~~~~~~g~l~~~v-~-~iP~~~--~L~Ts~--~~~~iP~l~~~yPn~~~~l~i~~~~~P~v~i~~~~~~v~~~~~v~~~ 229 (357)
++++|++|.+++.+ + +.|.++ .++|+. +|+++|+++++|||+++++++++.+||.+.|++++..+...+.+.++
T Consensus 292 ~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~c~g~~lp~l~~~~Pn~~v~l~i~t~~~P~v~i~~~~~~~~~~~~v~~~ 371 (492)
T KOG4160|consen 292 LLHAYQAGLLKLLIDSDKPPVDSLKLLTTSGFCIGDLLPELAEQYPNRTVELEISTLSPPLVVISEQGVDVVLAGSVDVF 371 (492)
T ss_pred HHHHHHhCceeEEEcCcCCCcccccccccceeechhhhHHHHHHCCCCeeEEEEEeCCCcEEEEecCCeEEEEecceEEE
Confidence 99999999999999 3 344434 456664 67799999999999999999999999999999999999999999886
Q ss_pred E-eCCCceeeEEEEEEEEEEEEEEEEEccEEEEEEEeceEEEEEeeecCCccccccHHHHHHHHHHHhhHHHHHhhccCC
Q 018380 230 V-LESGEVIPVACISLVIHGSCSVKILRNNLGGSVKLNGFTMSLTWSKIGKLRLYLIQPVVWAVIQTVFVPYVNSHLGQG 308 (357)
Q Consensus 230 v-~~~~~~~~~~~l~~~~~~~~~~~v~~~~l~~~~~~~~~~l~l~~S~iG~~~~~~L~~~i~~~l~~~~~P~lN~~L~~G 308 (357)
+ .++++.++++++++++++.++++++++++.|++++.+++++.++|++|.++.+.++.+++.+.+.++.|.+|++|++|
T Consensus 372 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~g~l~l~~~~~~~~~s~~~~i~~~~l~~~~~~~~~~~l~p~~n~~L~~G 451 (492)
T KOG4160|consen 372 VVPPSSTNQPLFTLTVDANVSATLSLSGNKLIGNLSLNKFKIEVKFSNIGGISLDSLQALLSTLSKSVLQPLVNSKLRKG 451 (492)
T ss_pred EecCCcccceeEEEEEEEEEEEEEEEeeeeEEEEEEEeeeEEEEeecccCCccHHHHHHHHHHHHHHHhHHHHHHHHhcC
Confidence 5 566678999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCCCeeEeeeEEEEEcCEEEEEeeeeEcCccC
Q 018380 309 FPLPIIHGFTVKSAEIICSSSKITVCSDVAYADSHN 344 (357)
Q Consensus 309 ~pLP~~~~~~l~n~~i~~~~~~l~i~~D~~~~~~~~ 344 (357)
||||.+.++++.|+++.+++|+|++++||.|.+...
T Consensus 452 ~~lp~~~~~~~~~~~i~~~~~~L~l~~D~~~~~~~~ 487 (492)
T KOG4160|consen 452 FPLPIPDGFKLINPEISIVDGFLLLSADFLYKRTLL 487 (492)
T ss_pred ccccccccceeecceEEEecCeEEEeccccchhhhh
Confidence 999999999999999999999999999999998844
No 2
>PF02886 LBP_BPI_CETP_C: LBP / BPI / CETP family, C-terminal domain; InterPro: IPR001124 This entry represents the C-terminal domain found in several lipid-binding serum glycoproteins. The N- and C-terminal domains share a similar two-layer alpha/beta structure, but they show little sequence identity. Proteins containing this C-terminal domain include: Bactericidal permeability-increasing protein (BPI) Lipopolysaccharide-binding protein (LBP) Cholesteryl ester transfer protein (CETP) Phospholipid transfer protein (PLTP) Palate, lung and nasal epithelium carcinoma-associated protein (PLUNC) Bactericidal permeability-increasing protein (BPI) is a potent antimicrobial protein of 456 residues that binds to and neutralises lipopolysaccharides from the outer membrane of Gram-negative bacteria []. BPI contains two domains that adopt the same structural fold, even though they have little sequence similarity []. Lipopolysaccharide-binding protein (LBP) is an endotoxin-binding protein that is closely related to, and functions in a co-ordinated manner with BPI to facilitate an integrated host response to invading Gram-negative bacteria []. Cholesteryl ester transfer protein (CETP) is a glycoprotein that facilitates the transfer of lipids (cholesteryl esters and triglycerides) between the different lipoproteins that transport them through plasma, including HDL, LDL, VLDL and chylomicrons. These lipoproteins shield the lipids from water by encapsulating them within a coating of polar lipids and proteins []. Phospholipid transfer protein (PLTP) exchanges phospholipids between lipoproteins and remodels high-density lipoproteins (HDLs) []. Palate, lung and nasal epithelium carcinoma-associated protein (PLUNC) is a potential host defensive protein that is secreted from the submucosal gland to the saliva and nasal lavage fluid. PLUNC aapears to be a secreted product of neutrophil granules that participates in an aspect of the inflammatory response that contributes to host defence []. Short palate, lung and nasal epithelium clone 1 (SPLUNC1) may bind the lipopolysaccharide of Gram-negative nanobacteria, thereby playing an important role in the host defence of nasopharyngeal epithelium [].; GO: 0008289 lipid binding; PDB: 2OBD_A 1EWF_A 1BP1_A.
Probab=100.00 E-value=3.1e-50 Score=368.14 Aligned_cols=233 Identities=27% Similarity=0.446 Sum_probs=204.8
Q ss_pred ceeeeeeeeEEEcCCCCCCCCCCCCCCCCCCCCCCCCCeEEEEechhHHHHHHHHHHhcCcceEEe--ccCCCCC--Ccc
Q 018380 104 SSIEFDINGLFTARKKASIPNYYNSNLQPPVFCSDQSKMLGISLDEAVLNSASALYYDAEFMQWTV--DKVPDQS--LLN 179 (357)
Q Consensus 104 ~~i~~~l~G~~~~~~~~~~~p~~~~~~p~~~~~~~~~~M~~i~lS~y~~NS~l~~~~~~g~l~~~v--~~iP~~~--~L~ 179 (357)
+|||+++||||++.++...+ |+.+|....++++++|+++|+|||++||++|+||++|.|+++| +++|+.+ .||
T Consensus 1 ~~~e~~~kGe~~~~~~~~~~---~~~~~~~~~~~~~~~Ml~~~iSey~~NS~~~~~~~~g~l~~~it~~~~p~~~~~~l~ 77 (238)
T PF02886_consen 1 NYLETDHKGEFFPLNHHSPP---PFPPPVLPLPNSSSRMLYFWISEYVFNSLLYAAYQAGALDFTITPDMLPKSSPLLLT 77 (238)
T ss_dssp SEEEEEE--EEEETTSB------SS--EE-GGGS-SSSSEEEEEEHHHHHHHHHHHHHTT-SEEEEEHHHCHCCHCHTTB
T ss_pred CccccccceeEEcCCCCCCC---CCCCCCcCCCCCCCcEEEEEEcHHHHHHHHHHHHHCCceEEEEecCccccccccccc
Confidence 58999999999999987665 3333322334577899999999999999999999999999999 6899875 789
Q ss_pred hhhHhhhcHHHHhhCCCCceEEEEeeCCCCeEEEEeCcEEEEEEEEEEEEE-eCCCceeeEEEEEEEEEEEEEEEEEccE
Q 018380 180 TAGWRFIIPQLYRKYPNDDMNLNISLSSPPVIRVAEDNIDATVHADLIIDV-LESGEVIPVACISLVIHGSCSVKILRNN 258 (357)
Q Consensus 180 Ts~~~~~iP~l~~~yPn~~~~l~i~~~~~P~v~i~~~~~~v~~~~~v~~~v-~~~~~~~~~~~l~~~~~~~~~~~v~~~~ 258 (357)
|.|+|.++|+|+++|||+++++++++.++|.++++++++++.+.+++++++ .++++..+++++++++++++++++.+++
T Consensus 78 T~~~g~~iP~l~~~yPn~~~~l~i~~~~~P~v~~~~~~~~v~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~~~~i~~~~ 157 (238)
T PF02886_consen 78 TSCIGDLIPELAKKYPNSPVELKIRSTKPPVVTISPGGVTVSLSGSVEVFVVPPNSSKVPLFSLNVDTSADVQLSISNNK 157 (238)
T ss_dssp HCCCCTCCCCHHHCSCC-CEEEEEEESS--EEEEETTEEEEEEEEEEEEEEE-TTCGCEEEEEEEEEEEEEEEEEEETTE
T ss_pred cccHHhhhhhHHhcCCCCeEEEEEEeCCCCEEEEEcCcEEEEEEEEEEEEEecCCCceEEEEEEEEEEEEEEEEEEeCCE
Confidence 999999999999999999999999999999999999999999999999987 5566789999999999999999999999
Q ss_pred EEEEEEeceEEEEEeeecCCccccccHHHHHHHHHHHhhHHHHHhhccCCccCCCCCCeeEeeeEEEEEcCEEEEEeeee
Q 018380 259 LGGSVKLNGFTMSLTWSKIGKLRLYLIQPVVWAVIQTVFVPYVNSHLGQGFPLPIIHGFTVKSAEIICSSSKITVCSDVA 338 (357)
Q Consensus 259 l~~~~~~~~~~l~l~~S~iG~~~~~~L~~~i~~~l~~~~~P~lN~~L~~G~pLP~~~~~~l~n~~i~~~~~~l~i~~D~~ 338 (357)
|+|++++.++++++.+|.||.++++.|+.+++.+++.+++|.+|++|++|||||.+++++|.|+++.++||||.+++|++
T Consensus 158 l~~~~~l~~~~~~~~~S~ig~~~~~~l~~~l~~~~~~~~~p~lN~~L~~G~pLP~~~~~~l~n~~i~~~~~~l~i~~D~~ 237 (238)
T PF02886_consen 158 LTGSLSLDKFDLSLVSSSIGPFDVSSLEFLLNSILKEVLLPKLNKKLANGFPLPIPKGINLSNPQISIHDGYLLISTDFQ 237 (238)
T ss_dssp EEEEEEEEEEEEEEEEECTSS--GHHHHHHHHHHHHHCCHHHHHHHHHHHCCHHHHTTCCCCEEEEEEETTEEEEEEEEE
T ss_pred EEEEEecccEEEEEecCCcCccchHHHHHHHHHHHHHHHHHHHHHHhcccEecccCCCeEEecCEEEEECCEEEEEeccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred E
Q 018380 339 Y 339 (357)
Q Consensus 339 ~ 339 (357)
|
T Consensus 238 ~ 238 (238)
T PF02886_consen 238 Y 238 (238)
T ss_dssp E
T ss_pred C
Confidence 7
No 3
>smart00329 BPI2 BPI/LBP/CETP C-terminal domain. Bactericidal permeability-increasing protein (BPI) / Lipopolysaccharide-binding protein (LBP) / Cholesteryl ester transfer protein (CETP) C-terminal domain
Probab=100.00 E-value=1.9e-44 Score=321.21 Aligned_cols=197 Identities=23% Similarity=0.412 Sum_probs=190.0
Q ss_pred CCCeEEEEechhHHHHHHHHHHhcCcceEEe--ccCCCCC--CcchhhHhhhcHHHHhhCCCCceEEEEeeCCCCeEEEE
Q 018380 139 QSKMLGISLDEAVLNSASALYYDAEFMQWTV--DKVPDQS--LLNTAGWRFIIPQLYRKYPNDDMNLNISLSSPPVIRVA 214 (357)
Q Consensus 139 ~~~M~~i~lS~y~~NS~l~~~~~~g~l~~~v--~~iP~~~--~L~Ts~~~~~iP~l~~~yPn~~~~l~i~~~~~P~v~i~ 214 (357)
+++|+|+|+|||++||++++||++|.|++++ +++|+.+ +|||+|+|.++|+++++|||+++.+++++.++|.++++
T Consensus 1 ~~~Mv~i~lSey~~NS~~~~~~~ag~l~~~it~~~ip~~~~~~lnT~~~~~~iP~l~~~yPn~~~~L~i~~~~~P~v~i~ 80 (202)
T smart00329 1 SDRMVYLALSEYFFNSLLFVYQQAGALKLTITDDMLPKESKFLLTTCCFGTLVPEVAEQYPDSTLQLEISVLSPPRVTLQ 80 (202)
T ss_pred CCeEEEEEecHHHHhHHHHHHHHCCcceEEeccccCCCcCccccchhHHHHHHHHHHHHCCCCcEEEEEEeCCCCEEEEe
Confidence 4699999999999999999999999999999 7999985 89999999999999999999999999999999999999
Q ss_pred eCcEEEEEEEEEEEEE-eCCCceeeEEEEEEEEEEEEEEEEEccEEEEEEEeceEEEEEeeecCCccccccHHHHHHHHH
Q 018380 215 EDNIDATVHADLIIDV-LESGEVIPVACISLVIHGSCSVKILRNNLGGSVKLNGFTMSLTWSKIGKLRLYLIQPVVWAVI 293 (357)
Q Consensus 215 ~~~~~v~~~~~v~~~v-~~~~~~~~~~~l~~~~~~~~~~~v~~~~l~~~~~~~~~~l~l~~S~iG~~~~~~L~~~i~~~l 293 (357)
++++++.+.+.+++++ .|+++..++|+++++++++++++++++++.|+++++++++++++|+||+++++.|+.+++.++
T Consensus 81 ~~~~~v~~~~~v~~~v~~~~~~~~~lf~l~~~~~~~~~~~~~~~~l~g~l~l~~~~l~l~~S~ig~~~~~~L~~~l~~~~ 160 (202)
T smart00329 81 PGGATVYIHASVKVFAILPDSSRASLFLMSVDTNVSAKSSFKTKKLLGELKLDKLQVELKHSNVGGFDAELLEDLLNYLV 160 (202)
T ss_pred cCCEEEEEeEEEEEEEeCCCCCcceEEEEEEEEEEEEEEEEeCCEEEEEEEeccEEEEeeecccCCcCHHHHHHHHHHHH
Confidence 9999999999999987 556678999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhHHHHHhhccCCccCCCCCCeeEeeeEEEEEcCEEEEEe
Q 018380 294 QTVFVPYVNSHLGQGFPLPIIHGFTVKSAEIICSSSKITVCS 335 (357)
Q Consensus 294 ~~~~~P~lN~~L~~G~pLP~~~~~~l~n~~i~~~~~~l~i~~ 335 (357)
+.+++|.+|++|++|||||.++++++.|+++.++|||+.+++
T Consensus 161 ~~~~~P~vN~~L~~G~pLP~~~~~~l~n~~i~~~~~~l~i~~ 202 (202)
T smart00329 161 PAVLLPKVNEKLRRGVPLPLPCGVQLINPVLQVHDDFLLLGA 202 (202)
T ss_pred HHhhHHHHHHHHcCCcCCCCCCceEEEcCEEEEEcCEEEEeC
Confidence 999999999999999999999999999999999999999985
No 4
>cd00026 BPI2 BPI/LBP/CETP C-terminal domain; Bactericidal permeability-increasing protein (BPI) / Lipopolysaccharide-binding protein (LBP) / Cholesteryl ester transfer protein (CETP) C-terminal domain; binds to and neutralizes lipopolysaccharides from the outer membrane of Gram-negative bacteria.; Apolar pockets on the concave surface bind a molecule of phosphatidylcholine, primarily by interacting with their acyl chains; this suggests that the pockets may also bind the acyl chains of lipopolysaccharide.
Probab=100.00 E-value=8.6e-44 Score=316.45 Aligned_cols=197 Identities=30% Similarity=0.486 Sum_probs=189.4
Q ss_pred eEEEEechhHHHHHHHHHHhcCcceEEe--ccCCCCCCcchhhHhhhcHHHHhhCCCCceEEEEeeCCCCeEEEEeCcEE
Q 018380 142 MLGISLDEAVLNSASALYYDAEFMQWTV--DKVPDQSLLNTAGWRFIIPQLYRKYPNDDMNLNISLSSPPVIRVAEDNID 219 (357)
Q Consensus 142 M~~i~lS~y~~NS~l~~~~~~g~l~~~v--~~iP~~~~L~Ts~~~~~iP~l~~~yPn~~~~l~i~~~~~P~v~i~~~~~~ 219 (357)
|+|+|+|||++||++++||++|.|++++ +++|...+|||+.+|.++|+++++|||+++.+++++.+||.+++++++++
T Consensus 1 M~~~~~se~~~nSa~~~~~~ag~l~~~it~~~~p~~~~LnT~~~~~~iP~l~~~yPn~~~~L~i~~~~~P~v~i~~~~~~ 80 (200)
T cd00026 1 MVYLAVSEHVFNSAALVYFQAGALNLLLTDDMPPSKSRLTTSIFGIFIPELAKKYPNMPQQLKISVSSPPHLVLSEGGAT 80 (200)
T ss_pred CEEEEEeHHHHhHHHHHHhhCCeEEEEEeCCcCCcccccchhHHHHHHHHHHHHCCCCcEEEEEEeCCCCEEEEecCCEE
Confidence 8999999999999999999999999999 57885569999999999999999999999999999999999999999999
Q ss_pred EEEEEEEEEEEe-CCCceeeEEEEEEEEEEEEEEEEEccEEEEEEEeceEEEEEeeecCCccccccHHHHHHHHHHHhhH
Q 018380 220 ATVHADLIIDVL-ESGEVIPVACISLVIHGSCSVKILRNNLGGSVKLNGFTMSLTWSKIGKLRLYLIQPVVWAVIQTVFV 298 (357)
Q Consensus 220 v~~~~~v~~~v~-~~~~~~~~~~l~~~~~~~~~~~v~~~~l~~~~~~~~~~l~l~~S~iG~~~~~~L~~~i~~~l~~~~~ 298 (357)
+.+.+.+++++. ++++..++|+++++++++++++++++||.|++++.++++++++|+||.++++.|+.+++.+++..++
T Consensus 81 v~~~~~v~~~v~~~~~~~~~lf~l~~~~~~~~~~~~~~~kL~g~l~l~~~~~~l~~S~ig~~~~~~L~~~l~~vl~~~vl 160 (200)
T cd00026 81 LAQQLDVEIFATLPDSQLRPLFRLGVDTSSSAQLSVSKKKLIGSLNLDRFLLELKSSNIGSFIPELLQAILTTILEITVL 160 (200)
T ss_pred EEEEEEEEEEEeCCCCccceEEEEEEEEEEEEEEEEeCCEEEEEEEeccEEEEEcccccCCcCHHHHHHHHHHHHHhccc
Confidence 999999999874 5556689999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhccCCccCCCCCCeeEeeeEEEEEcCEEEEEeeee
Q 018380 299 PYVNSHLGQGFPLPIIHGFTVKSAEIICSSSKITVCSDVA 338 (357)
Q Consensus 299 P~lN~~L~~G~pLP~~~~~~l~n~~i~~~~~~l~i~~D~~ 338 (357)
|.+|++|++|||||.++++++.|+++.++|||+.+++|++
T Consensus 161 p~~N~~L~~G~pLP~~~~~~l~n~~i~~~~~~l~i~~d~~ 200 (200)
T cd00026 161 PNVNDKLRRGFPLPLPKNFTLYDAEIQVHKDFLLLGADVQ 200 (200)
T ss_pred HHHHHHhcCCcCCCCCCcceEEccEEEEECCEEEEecCCC
Confidence 9999999999999999999999999999999999999984
No 5
>smart00328 BPI1 BPI/LBP/CETP N-terminal domain. Bactericidal permeability-increasing protein (BPI) / Lipopolysaccharide-binding protein (LBP) / Cholesteryl ester transfer protein (CETP) N-terminal domain
Probab=99.90 E-value=9.8e-24 Score=191.24 Aligned_cols=119 Identities=20% Similarity=0.460 Sum_probs=111.9
Q ss_pred CeeeeEEEee-CCCCcEEEEeeeceeeeccEEEEEcCc-chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhhc
Q 018380 1 MQVGLTLGLE-TQKGTLKLSLVDCGCYVKDISIKLDGG-ASWLYQGMINAFEEQIVSAVENAITKKLKEGI-SKLDSLLQ 77 (357)
Q Consensus 1 ~~~~~~~~l~-~~~G~p~v~~~~C~~~i~~~~v~~~gg-~s~l~n~f~~~~~~~i~~~l~~~ic~~i~~~i-~~ln~~L~ 77 (357)
|++..++.+. |.+|||++++.+|++++++++++|+|+ ++|+||.|.+.|++.||+.|+++||++|++.+ +++|++|+
T Consensus 104 ~~i~~~l~l~~~~~G~p~v~~~~C~~~i~~v~l~~~G~~~swl~n~f~~~i~~~i~~~l~~~IC~~i~~~i~~~l~~~L~ 183 (225)
T smart00328 104 LSISADLRIESNPTGRPTVTLSSCSSSIGDVRLHFSGSVLGWLINLFRKFIENTLRNVLEGQICPVIDSAVSNKMNDYLQ 183 (225)
T ss_pred EEEEEEEEeccCCCCCeeEEeCCcccCcceEEEEEECCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456677775 889999999999999999999999996 99999999999999999999999999999998 68999999
Q ss_pred cCcccccccceEEEEEeecCCCeeecceeeeeeeeEEEcCCC
Q 018380 78 SLPKEIPVDDHASLNITFVDNPLLTSSSIEFDINGLFTARKK 119 (357)
Q Consensus 78 ~lp~~~~~~~~~~ldysl~~~P~it~~~i~~~l~G~~~~~~~ 119 (357)
++|+..++|+.+.+||+++++|.+|++|++++++|+|++.++
T Consensus 184 ~lp~~~~vd~~~~idysl~~~p~~t~~~l~~~~kg~f~~~~~ 225 (225)
T smart00328 184 TLPLSISLDSLIGVDYSLVSPPRVTAEFLDVRLKGKFFWKNH 225 (225)
T ss_pred hCceeeeecceeEEeeecccCCcccccccccccceeEEeCCC
Confidence 999999999999999999999999999999999999998763
No 6
>cd00025 BPI1 BPI/LBP/CETP N-terminal domain; Bactericidal permeability-increasing protein (BPI) / Lipopolysaccharide-binding protein (LBP) / Cholesteryl ester transfer protein (CETP) N-terminal domain; binds to and neutralizes lipopolysaccharides from the outer membrane of Gram-negative bacteria.; Apolar pockets on the concave surface bind a molecule of phosphatidylcholine, primarily by interacting with their acyl chains; this suggests that the pockets may also bind the acyl chains of lipopolysaccharide.
Probab=99.89 E-value=4.9e-23 Score=186.33 Aligned_cols=113 Identities=32% Similarity=0.550 Sum_probs=104.8
Q ss_pred eeeeEEEee-CCCCcEEEEeeeceeeeccEEEEEcCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHhhccC
Q 018380 2 QVGLTLGLE-TQKGTLKLSLVDCGCYVKDISIKLDGGASWLYQGMINAFEEQIVSAVENAITKKLKEGIS-KLDSLLQSL 79 (357)
Q Consensus 2 ~~~~~~~l~-~~~G~p~v~~~~C~~~i~~~~v~~~gg~s~l~n~f~~~~~~~i~~~l~~~ic~~i~~~i~-~ln~~L~~l 79 (357)
++..++.+. |.+|||++++.+|++++++++++|+||++|+||.|.+.+++.+++.+++++|+.+...++ ++|..|+ +
T Consensus 109 ~i~~~l~l~~d~~G~p~v~~~~C~~~v~~~~i~l~gg~~~l~~~f~~~i~~~l~~~l~~~iCp~i~~~i~~~~~~~l~-l 187 (223)
T cd00025 109 NIQADLRLGRDPSGRPKLSLSDCSSTVGSLRVHLGGSLGWLAKLFMNFIESLLKKVLKGQLCPVIDASLVSMLESLLQ-L 187 (223)
T ss_pred EEEEEEEEeeCCCCCeEEEeCCCCcccCcEEEEEeCChHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhhhhcC-C
Confidence 444555555 556999999999999999999999999999999999999999999999999999999995 6788888 9
Q ss_pred cccccccceEEEEEeecCCCeeecceeeeeeeeEEE
Q 018380 80 PKEIPVDDHASLNITFVDNPLLTSSSIEFDINGLFT 115 (357)
Q Consensus 80 p~~~~~~~~~~ldysl~~~P~it~~~i~~~l~G~~~ 115 (357)
|+..++|+.+.+||+|+++|.+|++|+++++||+||
T Consensus 188 p~~~~vd~~~~idysl~~~P~~t~~~l~~~~kg~f~ 223 (223)
T cd00025 188 PKLPPVDSNAGVDYSLTSPPVLTASYLDSDIKGTFQ 223 (223)
T ss_pred ceEeccCCcEEEEEEeecCCccccceeeeeeeEEEC
Confidence 999999999999999999999999999999999996
No 7
>cd00264 BPI BPI/LBP/CETP domain; Bactericidal permeability-increasing protein (BPI) / Lipopolysaccharide-binding protein (LBP) / Cholesteryl ester transfer protein (CETP) domain; binds to and neutralizes lipopolysaccharides from the outer membrane of Gram-negative bacteria.; Apolar pockets on the concave surface bind a molecule of phosphatidylcholine, primarily by interacting with their acyl chains; this suggests that the pockets may also bind the acyl chains of lipopolysaccharide.
Probab=99.89 E-value=1.2e-21 Score=175.44 Aligned_cols=193 Identities=28% Similarity=0.381 Sum_probs=177.6
Q ss_pred eEEEEechhHHHHHHHHHHhcCcceEEe--ccCCCCCCcchhhHhhhcHHHHhhCCCCceEEEEeeCCCCeEEEEeCcEE
Q 018380 142 MLGISLDEAVLNSASALYYDAEFMQWTV--DKVPDQSLLNTAGWRFIIPQLYRKYPNDDMNLNISLSSPPVIRVAEDNID 219 (357)
Q Consensus 142 M~~i~lS~y~~NS~l~~~~~~g~l~~~v--~~iP~~~~L~Ts~~~~~iP~l~~~yPn~~~~l~i~~~~~P~v~i~~~~~~ 219 (357)
|+++++|||++|++.+.++++|.+.+.+ .++|+...+.++ .++|.++.+||+..++++.....+|.+.+.++++.
T Consensus 1 m~~~~ls~~~l~~~~~~~~~~~~~~~~i~~~~i~~~~~~~~~---~~~~~~~~~~~~~~~~l~~~~~~~p~v~~~~~g~~ 77 (208)
T cd00264 1 MVVLRLSEDVLNSALQVYLKAGALLLTLTIPDIPKALKLKLS---GIIPLGAKKYPDMNLQLKILSLSSPTLKLSPKGLD 77 (208)
T ss_pred CeEEEEeHHHHHHHHHHHHHHHHhhcCcccCCCCCccccccc---cccceEEEEeeCCceEEEEEecCCCeEEEecCCEE
Confidence 8999999999999999999999987666 567766544444 79999999999999999999999999999999999
Q ss_pred EEEEEEEEEEE-eCCC-ceeeEEEEEEEEEEEEEEEEEccEEEEEEEeceEEEEEeeecC---CccccccHHHHHHHHHH
Q 018380 220 ATVHADLIIDV-LESG-EVIPVACISLVIHGSCSVKILRNNLGGSVKLNGFTMSLTWSKI---GKLRLYLIQPVVWAVIQ 294 (357)
Q Consensus 220 v~~~~~v~~~v-~~~~-~~~~~~~l~~~~~~~~~~~v~~~~l~~~~~~~~~~l~l~~S~i---G~~~~~~L~~~i~~~l~ 294 (357)
+.+.+++++.+ .+.+ +..+.+.+++++++++++...++++++.++..+.++...++.+ |.+....|+..++..++
T Consensus 78 ~~~~~~i~~~~~~~~~~~~~~~~~l~v~~~~~~~l~~~~g~l~~~l~~c~~~~~~~~~~~~g~~~~~~~~l~~~l~~~lc 157 (208)
T cd00264 78 LSQSVSIELFVTWPASDGGNPLFSLEVEISASLQLSVDPGRLTLSLSLCSSTVELLSSNIGGFGNFIVSLLQKVLNTILC 157 (208)
T ss_pred EEEEEEEEEEEEeccCCCCCEEEEEEEEEEEEEEEEeeCCEEEEEEecCcceeeEEEEEEeccchhHHHHHHHHHHHHHH
Confidence 99999999975 5554 6678999999999999999999999999999999999999999 99999999999999999
Q ss_pred HhhHHHHHhhccCCccC------CCCCCeeEee-eEEEEEcCEEEEEeee
Q 018380 295 TVFVPYVNSHLGQGFPL------PIIHGFTVKS-AEIICSSSKITVCSDV 337 (357)
Q Consensus 295 ~~~~P~lN~~L~~G~pL------P~~~~~~l~n-~~i~~~~~~l~i~~D~ 337 (357)
..+.|.+|.+|++|+++ |.+.++++.+ +.+.++++|+.+++|+
T Consensus 158 ~~v~~~~n~~l~~~l~l~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~~~ 207 (208)
T cd00264 158 PVVLPALNSKLRSGLPLLPVPPVPSPAGVDYSLTAEPVLSASFLLLDADV 207 (208)
T ss_pred HHHHHHHHHHHHccCCcCCccCCCceeEEEEEEccCCceeccEEEEcccc
Confidence 99999999999999999 9999999999 9999999999999986
No 8
>PF01273 LBP_BPI_CETP: LBP / BPI / CETP family, N-terminal domain; InterPro: IPR017942 This entry represents the N-terminal domain found in several lipid-binding serum glycoproteins. The N- and C-terminal domains share a similar two-layer alpha/beta structure, but they show little sequence identity. Proteins containing this N-terminal domain include: Bactericidal permeability-increasing protein (BPI) Lipopolysaccharide-binding protein (LBP) Cholesteryl ester transfer protein (CETP) Phospholipid transfer protein (PLTP) Palate, lung and nasal epithelium carcinoma-associated protein (PLUNC) Bactericidal permeability-increasing protein (BPI) is a potent antimicrobial protein of 456 residues that binds to and neutralises lipopolysaccharides from the outer membrane of Gram-negative bacteria []. BPI contains two domains that adopt the same structural fold, even though they have little sequence similarity []. Lipopolysaccharide-binding protein (LBP) is an endotoxin-binding protein that is closely related to, and functions in a co-ordinated manner with BPI to facilitate an integrated host response to invading Gram-negative bacteria []. Cholesteryl ester transfer protein (CETP) is a glycoprotein that facilitates the transfer of lipids (cholesteryl esters and triglycerides) between the different lipoproteins that transport them through plasma, including HDL, LDL, VLDL and chylomicrons. These lipoproteins shield the lipids from water by encapsulating them within a coating of polar lipids and proteins []. Phospholipid transfer protein (PLTP) exchanges phospholipids between lipoproteins and remodels high-density lipoproteins (HDLs) []. Palate, lung and nasal epithelium carcinoma-associated protein (PLUNC) is a potential host defensive protein that is secreted from the submucosal gland to the saliva and nasal lavage fluid. PLUNC appears to be a secreted product of neutrophil granules that participates in an aspect of the inflammatory response that contributes to host defence []. Short palate, lung and nasal epithelium clone 1 (SPLUNC1) may bind the lipopolysaccharide of Gram-negative nanobacteria, thereby playing an important role in the host defence of nasopharyngeal epithelium [].; GO: 0008289 lipid binding; PDB: 1EWF_A 1BP1_A 2OBD_A.
Probab=99.39 E-value=1.4e-12 Score=112.28 Aligned_cols=70 Identities=30% Similarity=0.548 Sum_probs=62.7
Q ss_pred eeeeEEEee-CCCCcEEEEeeeceeeeccEEEEEcCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018380 2 QVGLTLGLE-TQKGTLKLSLVDCGCYVKDISIKLDGGASWLYQGMINAFEEQIVSAVENAITKKLKEGISK 71 (357)
Q Consensus 2 ~~~~~~~l~-~~~G~p~v~~~~C~~~i~~~~v~~~gg~s~l~n~f~~~~~~~i~~~l~~~ic~~i~~~i~~ 71 (357)
++.+++.+. |.+|||++++.+|++++++++++++||++|+||.|.+.|++.|++.+++++|+.|+..++.
T Consensus 93 ~i~~~i~l~~~~~G~~~v~~~~C~~~i~~v~i~~~gg~~~l~~~~~~~l~~~i~~~l~~~iC~~i~~~l~~ 163 (164)
T PF01273_consen 93 DISVTIRLERDESGRPTVVVGSCSSDIGSVDIKLHGGASWLYNLFINFLSKSIRSLLQKKICPVINSLLSN 163 (164)
T ss_dssp EEEEEEEEEEECCTEEEEEEEEEEEEEEEEEEEETTCGCCHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEEEEEEEcCCCCeEEEECCCccCcceEEEEECCCcHHHHHHHHHHHHHHHHHHHHhhcchHhHHhhcC
Confidence 344455555 7779999999999999999999999999999999999999999999999999999888764
No 9
>cd00264 BPI BPI/LBP/CETP domain; Bactericidal permeability-increasing protein (BPI) / Lipopolysaccharide-binding protein (LBP) / Cholesteryl ester transfer protein (CETP) domain; binds to and neutralizes lipopolysaccharides from the outer membrane of Gram-negative bacteria.; Apolar pockets on the concave surface bind a molecule of phosphatidylcholine, primarily by interacting with their acyl chains; this suggests that the pockets may also bind the acyl chains of lipopolysaccharide.
Probab=99.29 E-value=2.4e-11 Score=108.60 Aligned_cols=103 Identities=24% Similarity=0.354 Sum_probs=92.3
Q ss_pred eeeeEEEeeCCCCcEEEEeeeceeeeccEEEEEcCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHhhccCc
Q 018380 2 QVGLTLGLETQKGTLKLSLVDCGCYVKDISIKLDGGASWLYQGMINAFEEQIVSAVENAITKKLKEGIS-KLDSLLQSLP 80 (357)
Q Consensus 2 ~~~~~~~l~~~~G~p~v~~~~C~~~i~~~~v~~~gg~s~l~n~f~~~~~~~i~~~l~~~ic~~i~~~i~-~ln~~L~~lp 80 (357)
++..++.+..++|++++++.+|.+++++++++++| |.+++.+.+++.+++++|+.+...++ +++..++.+|
T Consensus 105 ~~~~~~~l~~~~g~l~~~l~~c~~~~~~~~~~~~g--------~~~~~~~~l~~~l~~~lc~~v~~~~n~~l~~~l~l~~ 176 (208)
T cd00264 105 EISASLQLSVDPGRLTLSLSLCSSTVELLSSNIGG--------FGNFIVSLLQKVLNTILCPVVLPALNSKLRSGLPLLP 176 (208)
T ss_pred EEEEEEEEEeeCCEEEEEEecCcceeeEEEEEEec--------cchhHHHHHHHHHHHHHHHHHHHHHHHHHHccCCcCC
Confidence 44555555544599999999999999999999999 66678999999999999999999995 7899999999
Q ss_pred ccccccceEEEEEeecCCCeeecceeeeeeeeE
Q 018380 81 KEIPVDDHASLNITFVDNPLLTSSSIEFDINGL 113 (357)
Q Consensus 81 ~~~~~~~~~~ldysl~~~P~it~~~i~~~l~G~ 113 (357)
+ .+++....+||++++.|.++++|++++++|+
T Consensus 177 ~-~~~~~~~~i~~~~~~~~~~~~~~l~~~~~~~ 208 (208)
T cd00264 177 V-PPVPSPAGVDYSLTAEPVLSASFLLLDADVT 208 (208)
T ss_pred c-cCCCceeEEEEEEccCCceeccEEEEccccC
Confidence 9 9999999999999999999999999999874
No 10
>PF14613 DUF4449: Protein of unknown function (DUF4449)
Probab=93.27 E-value=0.3 Score=41.77 Aligned_cols=56 Identities=18% Similarity=0.376 Sum_probs=49.1
Q ss_pred eeeccEEEEEcCc-chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCc
Q 018380 25 CYVKDISIKLDGG-ASWLYQGMINAFEEQIVSAVENAITKKLKEGISKLDSLLQSLP 80 (357)
Q Consensus 25 ~~i~~~~v~~~gg-~s~l~n~f~~~~~~~i~~~l~~~ic~~i~~~i~~ln~~L~~lp 80 (357)
+.+.++++++... -.+|+.+|..++.+.||..|++.|-.+|+..++.++..|-.+-
T Consensus 2 V~i~~L~ikikkSkHklL~~~fKPll~~~vR~alqKalE~qIr~~~~~~D~~l~~i~ 58 (164)
T PF14613_consen 2 VDIDNLKIKIKKSKHKLLFKLFKPLLLKVVRPALQKALEKQIRDAFEKLDRFLYDIH 58 (164)
T ss_pred cccccceeEeeccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 4678899999976 8899999999999999999999999999999988887775544
No 11
>smart00700 JHBP Juvenile hormone binding protein domains in insects. The juvenile hormone exerts pleiotropic functions during insect life cycles and its binding proteins regulate these functions.
Probab=86.29 E-value=8.4 Score=34.59 Aligned_cols=70 Identities=19% Similarity=0.258 Sum_probs=52.2
Q ss_pred CC--cEEEEeeeceeeeccEEEEEcCc------chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhhccCccc
Q 018380 13 KG--TLKLSLVDCGCYVKDISIKLDGG------ASWLYQGMINAFEEQIVSAVENAITKKLKEGI-SKLDSLLQSLPKE 82 (357)
Q Consensus 13 ~G--~p~v~~~~C~~~i~~~~v~~~gg------~s~l~n~f~~~~~~~i~~~l~~~ic~~i~~~i-~~ln~~L~~lp~~ 82 (357)
+| ++++.-.++...++++++++.+= ++...|-|.+.--..+-+.++..+.+.+.+.+ ..+|+.+..+|..
T Consensus 142 ~g~~yl~i~~~~~~~~~~~~~~~~~NLfngn~~L~~~~n~~lNen~~~i~~e~~p~i~~~~~~~~~~~~n~~~~~vp~~ 220 (225)
T smart00700 142 DGKTYLKIKSLKVNFEVGDVKSHLDNLFNGNKDLNDAINKFLNENWKALINELLPAIVEKLESIFLDLVNKVFAKVPID 220 (225)
T ss_pred CCeEEEEEEEEEEEEEeceEEEEeeccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHH
Confidence 55 68888888899999999987742 45556666565556666777777777777777 6789999998864
No 12
>PF06585 JHBP: Haemolymph juvenile hormone binding protein (JHBP); InterPro: IPR010562 This family consists of several insect specific haemolymph juvenile hormone binding proteins (JHBP). Juvenile hormone (JH) has a profound effect on insects. It regulates embryogenesis, maintains the status quo of larva development and stimulates reproductive maturation in the adult forms. JH is transported from the sites of its synthesis to target tissues by a haemolymph carrier called juvenile hormone-binding protein (JHBP). JHBP protects the JH molecules from hydrolysis by non-specific esterases present in the insect haemolymph []. The crystal structure of the JHBP from Galleria mellonella (Wax moth) shows an unusual fold consisting of a long alpha-helix wrapped in a much curved antiparallel beta-sheet. The folding pattern for this structure closely resembles that found in some tandem-repeat mammalian lipid-binding and bactericidal permeability-increasing proteins, with a similar organisation of the major cavity and a disulphide bond linking the long helix and the beta-sheet. It would appear that JHBP forms two cavities, only one of which, the one near the N- and C-termini, binds the hormone; binding induces a conformational change, of unknown significance [, ].; PDB: 3A1Z_D 3AOS_B 3AOT_A 2RQF_A 2RCK_A 3E8W_A 3E8T_A.
Probab=80.41 E-value=12 Score=34.04 Aligned_cols=71 Identities=17% Similarity=0.240 Sum_probs=40.1
Q ss_pred CCCcEEEEeeeceeeeccEEEEEcCc------chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhhccCccc
Q 018380 12 QKGTLKLSLVDCGCYVKDISIKLDGG------ASWLYQGMINAFEEQIVSAVENAITKKLKEGI-SKLDSLLQSLPKE 82 (357)
Q Consensus 12 ~~G~p~v~~~~C~~~i~~~~v~~~gg------~s~l~n~f~~~~~~~i~~~l~~~ic~~i~~~i-~~ln~~L~~lp~~ 82 (357)
...+.++..-++...++++++++.+- ++-..|-|.+..-..+-+.++..+-..+.+.+ ..+|+.|..+|..
T Consensus 168 g~~~l~i~~~~~~~~~~~~~~~~~nl~~g~~~l~~~~n~~in~~~~~~~~~~~p~i~~~~~~~i~~~~N~~l~~~p~~ 245 (248)
T PF06585_consen 168 GKTYLRITNFKIDFDLGNVKFDLENLFNGNKELSDFINKFINENWPELLNEVKPDIEEILSKIITDIINKILSKVPYD 245 (248)
T ss_dssp S-EEEEEEEEEEEEEECEEEEEESHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS-CC
T ss_pred CccEEEEEEEEEEEEeceEEEEeeccCCCCHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHH
Confidence 33556666666667789999999742 23333333333333333444444555555555 5678899888864
No 13
>PF14356 DUF4403: Domain of unknown function (DUF4403)
Probab=54.54 E-value=1.1e+02 Score=30.38 Aligned_cols=66 Identities=18% Similarity=0.256 Sum_probs=47.0
Q ss_pred CCCcEEEEeeeceeeeccEEEEEcCcchhhHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHhhcc
Q 018380 12 QKGTLKLSLVDCGCYVKDISIKLDGGASWLYQGMINAFEEQIVSAVENAI----TKKLKEGISKLDSLLQS 78 (357)
Q Consensus 12 ~~G~p~v~~~~C~~~i~~~~v~~~gg~s~l~n~f~~~~~~~i~~~l~~~i----c~~i~~~i~~ln~~L~~ 78 (357)
=.|+|......=...+.+++..+.... |+.+.-...+++.|++.|++++ -+.+.++-..+++.|.+
T Consensus 315 l~G~P~yD~~~~~l~l~dld~~~~t~~-~l~~~a~wl~~~~i~~~i~~~~~~~l~~~l~~~~~~i~~~l~~ 384 (427)
T PF14356_consen 315 LSGRPVYDPATQTLRLEDLDFDLDTKN-FLLKTAAWLLHGRIRKAIEEKLVFDLGPQLEEAKKKINAALAN 384 (427)
T ss_pred EEEEEEECCCCCEEEEEeeEEEecccc-hHHHHHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHhc
Confidence 357788888888888989888887552 4666666667778888888775 45555555667777776
No 14
>TIGR02610 PHA_gran_rgn putative polyhydroxyalkanoic acid system protein. All members of this family are encoded by genes polyhydroxyalkanoic acid (PHA) biosynthesis and utilization genes, including proteins at found at the surface of PHA granules. Examples so far are found in the Pseudomonales, Xanthomonadales, and Vibrionales, all of which belong to the Gammaproteobacteria.
Probab=52.96 E-value=47 Score=25.46 Aligned_cols=47 Identities=19% Similarity=0.297 Sum_probs=29.4
Q ss_pred cEEEEeeece--eeeccEEEEEcCcchhhHHHHHHHHHHHHHHHHHHHH
Q 018380 15 TLKLSLVDCG--CYVKDISIKLDGGASWLYQGMINAFEEQIVSAVENAI 61 (357)
Q Consensus 15 ~p~v~~~~C~--~~i~~~~v~~~gg~s~l~n~f~~~~~~~i~~~l~~~i 61 (357)
++.++..... .++.+=++.+.-.++|+...|...+++.|++.|.+.+
T Consensus 42 ~l~F~~~gv~G~l~V~~d~v~v~v~Lg~Ll~~f~~~Ie~~I~~~Ld~~l 90 (91)
T TIGR02610 42 TLRIARSGVDGAVHLGPQSIRVTAELGMLLSAMSGTIKSEIERALDKAL 90 (91)
T ss_pred EEEEEEeeeeEEEEEcCCeEEEEEEhHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4444444332 2333334455555789999988888888888777654
No 15
>PF09650 PHA_gran_rgn: Putative polyhydroxyalkanoic acid system protein (PHA_gran_rgn); InterPro: IPR013433 Proteins in this entry are encoded by genes involved in either polyhydroxyalkanoic acid (PHA) biosynthesis or utilisation, including proteins at found at the surface of PHA granules. These proteins have so far been predominantly found in the Pseudomonadales, Xanthomonadales, and Vibrionales, all of which belong to the Gammaproteobacteria.
Probab=41.47 E-value=43 Score=25.40 Aligned_cols=29 Identities=14% Similarity=0.312 Sum_probs=20.5
Q ss_pred EEEcCcchhhHHHHHHHHHHHHHHHHHHH
Q 018380 32 IKLDGGASWLYQGMINAFEEQIVSAVENA 60 (357)
Q Consensus 32 v~~~gg~s~l~n~f~~~~~~~i~~~l~~~ 60 (357)
|++.-.++|+...|...+++.|++.|.+.
T Consensus 58 v~l~v~Lg~Ll~~f~~~Ie~~I~~~Ld~~ 86 (87)
T PF09650_consen 58 VRLEVKLGFLLSPFKGKIEQEIEKNLDKL 86 (87)
T ss_pred EEEEEEcHHHHHHHHHHHHHHHHHHHHhh
Confidence 33344468999998887777777777654
No 16
>KOG0894 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=31.57 E-value=31 Score=30.76 Aligned_cols=101 Identities=12% Similarity=0.106 Sum_probs=57.5
Q ss_pred eEEEEEeecCCCeeecceeeeeeeeEEEcCCCCCCCCCCCCCCCCCC--CCCC---CCCeEEEEechhHHHHHH----HH
Q 018380 88 HASLNITFVDNPLLTSSSIEFDINGLFTARKKASIPNYYNSNLQPPV--FCSD---QSKMLGISLDEAVLNSAS----AL 158 (357)
Q Consensus 88 ~~~ldysl~~~P~it~~~i~~~l~G~~~~~~~~~~~p~~~~~~p~~~--~~~~---~~~M~~i~lS~y~~NS~l----~~ 158 (357)
-+.-.|-+.+++- ....|.+|+ |.-.-|+.||+.||... .+.. ...-+.+-+|||=..|.= -.
T Consensus 34 ILEWHYvl~Gped-------TPy~GG~Yh-Gkl~FP~eyP~KPPaI~MiTPNGRFktntRLCLSiSDfHPdsWNP~WsVS 105 (244)
T KOG0894|consen 34 ILEWHYVLRGPED-------TPYYGGYYH-GKLIFPPEYPFKPPAITMITPNGRFKTNTRLCLSISDFHPDSWNPGWSVS 105 (244)
T ss_pred eeeeEEEeeCCCC-------CCccCceee-eEEeCCCCCCCCCCeeEEECCCCceecCceEEEeccccCcCcCCCcccHH
Confidence 4567777776654 245677775 44456778888887542 2221 245699999999655431 11
Q ss_pred HHhcCcceEEeccCCC----------------CC---CcchhhHhhhcHHHHhhCCC
Q 018380 159 YYDAEFMQWTVDKVPD----------------QS---LLNTAGWRFIIPQLYRKYPN 196 (357)
Q Consensus 159 ~~~~g~l~~~v~~iP~----------------~~---~L~Ts~~~~~iP~l~~~yPn 196 (357)
..-.|+|.|-.+.-|- .+ .+.+..|..++||+-++|-.
T Consensus 106 tILtGLlSFM~e~~pTtGSI~tS~~~kr~lA~~SlaFN~kn~~F~~lFPE~Vee~nq 162 (244)
T KOG0894|consen 106 TILTGLLSFMTEDSPTTGSIETSDQDKRMLAKSSLAFNLKNPKFCELFPEVVEEYNQ 162 (244)
T ss_pred HHHHHHHHHHhcCCCccCcccccHHHHHHHHHhhhhhccCChHHHHHhHHHHHHHHH
Confidence 1112444443322221 11 23344488999999998854
No 17
>smart00709 Zpr1 Duplicated domain in the epidermal growth factor- and elongation factor-1alpha-binding protein Zpr1. Also present in archaeal proteins.
Probab=23.81 E-value=2.3e+02 Score=24.07 Aligned_cols=34 Identities=12% Similarity=0.211 Sum_probs=26.9
Q ss_pred eeEEEeeC--CCCcEEEEeeeceeeeccEEEEEcCc
Q 018380 4 GLTLGLET--QKGTLKLSLVDCGCYVKDISIKLDGG 37 (357)
Q Consensus 4 ~~~~~l~~--~~G~p~v~~~~C~~~i~~~~v~~~gg 37 (357)
.+++.+++ +-.|-.+.+..|...|-.+++.+..|
T Consensus 54 r~~l~V~~~~DL~r~VvkS~ta~i~IPEl~~ei~pg 89 (160)
T smart00709 54 RITLKVESPEDLNRDVVKSETATISIPELDLEIPPG 89 (160)
T ss_pred EEEEEECChhhccceEEEcCCcEEEeeeeeEEecCC
Confidence 45566653 44788899999999999999999855
Done!