Query 018383
Match_columns 357
No_of_seqs 192 out of 412
Neff 3.4
Searched_HMMs 46136
Date Fri Mar 29 08:33:39 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018383.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/018383hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF14379 Myb_CC_LHEQLE: MYB-CC 99.9 2.8E-25 6.1E-30 165.8 6.8 51 115-165 1-51 (51)
2 PLN03162 golden-2 like transcr 99.9 1.8E-23 3.9E-28 206.6 6.6 64 14-78 232-295 (526)
3 TIGR01557 myb_SHAQKYF myb-like 99.8 1.5E-21 3.3E-26 147.6 6.1 56 17-72 1-56 (57)
4 PF00249 Myb_DNA-binding: Myb- 97.3 0.00066 1.4E-08 48.6 5.1 48 19-70 1-48 (48)
5 smart00426 TEA TEA domain. 86.9 0.75 1.6E-05 37.0 3.3 18 21-38 5-22 (68)
6 PF15235 GRIN_C: G protein-reg 75.4 2.2 4.7E-05 38.5 2.3 19 137-155 71-89 (137)
7 PF14379 Myb_CC_LHEQLE: MYB-CC 65.7 18 0.0004 27.7 5.2 22 130-151 6-27 (51)
8 smart00501 BRIGHT BRIGHT, ARID 59.2 8.5 0.00018 30.9 2.5 47 25-72 33-86 (93)
9 smart00717 SANT SANT SWI3, AD 52.3 43 0.00093 22.0 4.7 43 20-68 2-45 (49)
10 PF12776 Myb_DNA-bind_3: Myb/S 48.9 19 0.00042 28.2 3.0 52 21-72 1-64 (96)
11 cd00167 SANT 'SWI3, ADA2, N-Co 46.9 66 0.0014 20.9 4.9 44 21-69 1-44 (45)
12 TIGR02894 DNA_bind_RsfA transc 39.4 17 0.00037 33.6 1.5 52 14-71 43-94 (161)
13 PF01519 DUF16: Protein of unk 35.1 79 0.0017 27.5 4.8 25 135-159 65-89 (102)
14 PF07384 DUF1497: Protein of u 29.8 42 0.00092 26.2 2.1 21 21-41 37-57 (59)
15 PF01388 ARID: ARID/BRIGHT DNA 26.6 31 0.00067 27.3 0.9 46 25-71 37-89 (92)
16 cd07645 I-BAR_IMD_BAIAP2L1 Inv 22.1 4.1E+02 0.0089 26.1 7.6 69 116-187 64-141 (226)
17 cd07646 I-BAR_IMD_IRSp53 Inver 22.0 3.8E+02 0.0083 26.3 7.4 68 117-187 67-143 (232)
18 PHA03185 UL14 tegument protein 21.4 2.6E+02 0.0057 27.2 6.0 39 114-156 63-101 (214)
No 1
>PF14379 Myb_CC_LHEQLE: MYB-CC type transfactor, LHEQLE motif
Probab=99.92 E-value=2.8e-25 Score=165.76 Aligned_cols=51 Identities=75% Similarity=1.067 Sum_probs=48.9
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhc
Q 018383 115 SLQIAQALQVQMEVQRKLHEQIEVQRHLQLRIEAQGKYLQSVLKKAQETLA 165 (357)
Q Consensus 115 ~~qi~EALr~QmEVQrrLhEQLEVQRhLQLRIEAQGKYLqsiLEKAqe~La 165 (357)
+++|+|||++||||||||||||||||+||+|||||||||++|||+|+++++
T Consensus 1 g~~i~EALr~QmEvQrrLhEQLEvQr~Lqlrieaqgkyl~~ilek~~~~~s 51 (51)
T PF14379_consen 1 GMQITEALRMQMEVQRRLHEQLEVQRHLQLRIEAQGKYLQSILEKAQKALS 51 (51)
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC
Confidence 578999999999999999999999999999999999999999999999864
No 2
>PLN03162 golden-2 like transcription factor; Provisional
Probab=99.88 E-value=1.8e-23 Score=206.64 Aligned_cols=64 Identities=44% Similarity=0.766 Sum_probs=59.9
Q ss_pred cCCCCccccChHHHHHHHHHHHHhCCCCCCCchhHHhhhCCCCccHHhHHHhhhhhhhccccchh
Q 018383 14 TDAKPRLKWTPELHQRFVDAVNHLGGPDKATPKSLMRVMGIPGLTLYHLKSHLQKYRLGKSQHVE 78 (357)
Q Consensus 14 ~~~KpRlrWT~ELH~rFV~AV~qLGG~dkAtPK~IL~lM~v~GLT~~hVKSHLQKYRl~~~~~~~ 78 (357)
..+|+||+||+|||++||+||++|| .++||||+||++|+|+|||++||||||||||+.+++...
T Consensus 232 g~KKpRLrWTpELH~rFVeAV~qLG-~dKATPK~ILelMnV~GLTRenVKSHLQKYRl~rk~l~~ 295 (526)
T PLN03162 232 GKKKAKVDWTPELHRRFVHAVEQLG-VEKAFPSRILELMGVQCLTRHNIASHLQKYRSHRRHLAA 295 (526)
T ss_pred CCCCCcccCCHHHHHHHHHHHHHhC-cCccchHHHHHHcCCCCcCHHHHHHHHHHHHHhcccccc
Confidence 3689999999999999999999999 799999999999999999999999999999999875543
No 3
>TIGR01557 myb_SHAQKYF myb-like DNA-binding domain, SHAQKYF class. This model describes a DNA-binding domain restricted to (but common in) plant proteins, many of which also contain a response regulator domain. The domain appears related to the Myb-like DNA-binding domain described by Pfam model pfam00249. It is distinguished in part by a well-conserved motif SH[AL]QKY[RF] at the C-terminal end of the motif.
Probab=99.85 E-value=1.5e-21 Score=147.61 Aligned_cols=56 Identities=57% Similarity=0.974 Sum_probs=54.5
Q ss_pred CCccccChHHHHHHHHHHHHhCCCCCCCchhHHhhhCCCCccHHhHHHhhhhhhhc
Q 018383 17 KPRLKWTPELHQRFVDAVNHLGGPDKATPKSLMRVMGIPGLTLYHLKSHLQKYRLG 72 (357)
Q Consensus 17 KpRlrWT~ELH~rFV~AV~qLGG~dkAtPK~IL~lM~v~GLT~~hVKSHLQKYRl~ 72 (357)
|+|++||+|+|.+|++||..||+.+.||||.|+++|++++||..+|+|||||||+.
T Consensus 1 k~r~~WT~eeh~~Fl~ai~~~G~g~~a~pk~I~~~~~~~~lT~~qV~SH~QKy~~k 56 (57)
T TIGR01557 1 KPRVVWTEDLHDRFLQAVQKLGGPDWATPKRILELMVVDGLTRDQVASHLQKYRLK 56 (57)
T ss_pred CCCCCCCHHHHHHHHHHHHHhCCCcccchHHHHHHcCCCCCCHHHHHHHHHHHHcc
Confidence 79999999999999999999998899999999999999999999999999999985
No 4
>PF00249 Myb_DNA-binding: Myb-like DNA-binding domain; InterPro: IPR014778 The retroviral oncogene v-myb, and its cellular counterpart c-myb, encode nuclear DNA-binding proteins. These belong to the SANT domain family that specifically recognise the sequence YAAC(G/T)G [, ]. In myb, one of the most conserved regions consisting of three tandem repeats has been shown to be involved in DNA-binding [].; PDB: 1X41_A 2XAF_B 2XAG_B 2XAH_B 2UXN_B 2Y48_B 2XAQ_B 2X0L_B 2IW5_B 2XAJ_B ....
Probab=97.25 E-value=0.00066 Score=48.55 Aligned_cols=48 Identities=27% Similarity=0.368 Sum_probs=41.3
Q ss_pred ccccChHHHHHHHHHHHHhCCCCCCCchhHHhhhCCCCccHHhHHHhhhhhh
Q 018383 19 RLKWTPELHQRFVDAVNHLGGPDKATPKSLMRVMGIPGLTLYHLKSHLQKYR 70 (357)
Q Consensus 19 RlrWT~ELH~rFV~AV~qLGG~dkAtPK~IL~lM~v~GLT~~hVKSHLQKYR 70 (357)
|..||++=+..|++||.++|.. .-+.|-+.|+ .|-|..++++|.++|+
T Consensus 1 r~~Wt~eE~~~l~~~v~~~g~~---~W~~Ia~~~~-~~Rt~~qc~~~~~~~~ 48 (48)
T PF00249_consen 1 RGPWTEEEDEKLLEAVKKYGKD---NWKKIAKRMP-GGRTAKQCRSRYQNLL 48 (48)
T ss_dssp S-SS-HHHHHHHHHHHHHSTTT---HHHHHHHHHS-SSSTHHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHHHhCCc---HHHHHHHHcC-CCCCHHHHHHHHHhhC
Confidence 5689999999999999999931 4789999999 8999999999999985
No 5
>smart00426 TEA TEA domain.
Probab=86.88 E-value=0.75 Score=37.04 Aligned_cols=18 Identities=28% Similarity=0.702 Sum_probs=16.4
Q ss_pred ccChHHHHHHHHHHHHhC
Q 018383 21 KWTPELHQRFVDAVNHLG 38 (357)
Q Consensus 21 rWT~ELH~rFV~AV~qLG 38 (357)
.|.++|-..|++|+...-
T Consensus 5 vWp~~lE~Af~~aL~~~~ 22 (68)
T smart00426 5 VWSPDIEQAFQEALAIYP 22 (68)
T ss_pred cCcHHHHHHHHHHHHHcC
Confidence 699999999999999774
No 6
>PF15235 GRIN_C: G protein-regulated inducer of neurite outgrowth C-terminus
Probab=75.38 E-value=2.2 Score=38.49 Aligned_cols=19 Identities=26% Similarity=0.466 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHhHHHHH
Q 018383 137 EVQRHLQLRIEAQGKYLQS 155 (357)
Q Consensus 137 EVQRhLQLRIEAQGKYLqs 155 (357)
.||+||+++|+.|++.+..
T Consensus 71 AIQkHLE~qi~e~~~q~~~ 89 (137)
T PF15235_consen 71 AIQKHLERQIEEHERQRAP 89 (137)
T ss_pred HHHHHHHHHHHHhhhcccc
Confidence 5899999999999988754
No 7
>PF14379 Myb_CC_LHEQLE: MYB-CC type transfactor, LHEQLE motif
Probab=65.69 E-value=18 Score=27.73 Aligned_cols=22 Identities=41% Similarity=0.539 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhH
Q 018383 130 RKLHEQIEVQRHLQLRIEAQGK 151 (357)
Q Consensus 130 rrLhEQLEVQRhLQLRIEAQGK 151 (357)
--|..|+||||+|.=.+|.|.+
T Consensus 6 EALr~QmEvQrrLhEQLEvQr~ 27 (51)
T PF14379_consen 6 EALRMQMEVQRRLHEQLEVQRH 27 (51)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3456666666666666666643
No 8
>smart00501 BRIGHT BRIGHT, ARID (A/T-rich interaction domain) domain. DNA-binding domain containing a helix-turn-helix structure
Probab=59.24 E-value=8.5 Score=30.91 Aligned_cols=47 Identities=32% Similarity=0.515 Sum_probs=35.7
Q ss_pred HHHHHHHHHHHHhCCCCCCC----chhHHhhhCCCCc---cHHhHHHhhhhhhhc
Q 018383 25 ELHQRFVDAVNHLGGPDKAT----PKSLMRVMGIPGL---TLYHLKSHLQKYRLG 72 (357)
Q Consensus 25 ELH~rFV~AV~qLGG~dkAt----PK~IL~lM~v~GL---T~~hVKSHLQKYRl~ 72 (357)
+|+.-|. +|..+||.+..+ =+.|.+.||++.- ...++++|..||=+.
T Consensus 33 dL~~Ly~-~V~~~GG~~~v~~~~~W~~Va~~lg~~~~~~~~~~~lk~~Y~k~L~~ 86 (93)
T smart00501 33 DLYRLYR-LVQERGGYDQVTKDKKWKEIARELGIPDTSTSAASSLRKHYERYLLP 86 (93)
T ss_pred cHHHHHH-HHHHccCHHHHcCCCCHHHHHHHhCCCcccchHHHHHHHHHHHHhHH
Confidence 7899898 699999987544 2568899999752 356789999988543
No 9
>smart00717 SANT SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains.
Probab=52.31 E-value=43 Score=22.03 Aligned_cols=43 Identities=16% Similarity=0.301 Sum_probs=32.2
Q ss_pred cccChHHHHHHHHHHHHhC-CCCCCCchhHHhhhCCCCccHHhHHHhhhh
Q 018383 20 LKWTPELHQRFVDAVNHLG-GPDKATPKSLMRVMGIPGLTLYHLKSHLQK 68 (357)
Q Consensus 20 lrWT~ELH~rFV~AV~qLG-G~dkAtPK~IL~lM~v~GLT~~hVKSHLQK 68 (357)
-.||++=...|+.+|.++| +. =+.|-..|+ +=|...|+.+...
T Consensus 2 ~~Wt~~E~~~l~~~~~~~g~~~----w~~Ia~~~~--~rt~~~~~~~~~~ 45 (49)
T smart00717 2 GEWTEEEDELLIELVKKYGKNN----WEKIAKELP--GRTAEQCRERWNN 45 (49)
T ss_pred CCCCHHHHHHHHHHHHHHCcCC----HHHHHHHcC--CCCHHHHHHHHHH
Confidence 4699999999999999999 32 356666654 6677777766554
No 10
>PF12776 Myb_DNA-bind_3: Myb/SANT-like DNA-binding domain; InterPro: IPR024752 This domain, found in a range of uncharacterised proteins, may be related to Myb/SANT-like DNA binding domains.
Probab=48.87 E-value=19 Score=28.16 Aligned_cols=52 Identities=19% Similarity=0.311 Sum_probs=34.4
Q ss_pred ccChHHHHHHHHHHHHh---CCC-CCCCch-----hHHhhhCC---CCccHHhHHHhhhhhhhc
Q 018383 21 KWTPELHQRFVDAVNHL---GGP-DKATPK-----SLMRVMGI---PGLTLYHLKSHLQKYRLG 72 (357)
Q Consensus 21 rWT~ELH~rFV~AV~qL---GG~-dkAtPK-----~IL~lM~v---~GLT~~hVKSHLQKYRl~ 72 (357)
+||++..+-||+.+-+. |.- .....| .|.+.|+- ..+|..+|++|+...|..
T Consensus 1 ~Wt~~~~~~ll~~~~e~~~~g~~~~~~~fk~~~w~~i~~~~~~~~~~~~t~~qlknk~~~lk~~ 64 (96)
T PF12776_consen 1 SWTPEMTRFLLDLLIEQINKGNRPTNGGFKKEGWNNIAEEFNEKTGLNYTKKQLKNKWKTLKKD 64 (96)
T ss_pred CCChHHHHHHHHHHHHHHHhCCCCCCCCcCHHHHHHHHHHHHHHhCCcccHHHHHHHHHHHHHH
Confidence 59999999999988643 433 233333 34444442 346889999998866554
No 11
>cd00167 SANT 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is also found in regulatory transcriptional repressor complexes where it also binds DNA.
Probab=46.89 E-value=66 Score=20.86 Aligned_cols=44 Identities=18% Similarity=0.330 Sum_probs=32.4
Q ss_pred ccChHHHHHHHHHHHHhCCCCCCCchhHHhhhCCCCccHHhHHHhhhhh
Q 018383 21 KWTPELHQRFVDAVNHLGGPDKATPKSLMRVMGIPGLTLYHLKSHLQKY 69 (357)
Q Consensus 21 rWT~ELH~rFV~AV~qLGG~dkAtPK~IL~lM~v~GLT~~hVKSHLQKY 69 (357)
.||++=+..|+.++..+|- ..-+.|-+.|+ +=|...|+.|..++
T Consensus 1 ~Wt~eE~~~l~~~~~~~g~---~~w~~Ia~~~~--~rs~~~~~~~~~~~ 44 (45)
T cd00167 1 PWTEEEDELLLEAVKKYGK---NNWEKIAKELP--GRTPKQCRERWRNL 44 (45)
T ss_pred CCCHHHHHHHHHHHHHHCc---CCHHHHHhHcC--CCCHHHHHHHHHHh
Confidence 4999999999999999992 22466777664 46777777776543
No 12
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=39.38 E-value=17 Score=33.63 Aligned_cols=52 Identities=21% Similarity=0.315 Sum_probs=38.3
Q ss_pred cCCCCccccChHHHHHHHHHHHHhCCCCCCCchhHHhhhCCCCccHHhHHHhhhhhhh
Q 018383 14 TDAKPRLKWTPELHQRFVDAVNHLGGPDKATPKSLMRVMGIPGLTLYHLKSHLQKYRL 71 (357)
Q Consensus 14 ~~~KpRlrWT~ELH~rFV~AV~qLGG~dkAtPK~IL~lM~v~GLT~~hVKSHLQKYRl 71 (357)
|.+...|||+..+-..+.+||...- -.+-.++.. ...||+..|-+-||.|..
T Consensus 43 TsAACGFRWNs~VRkqY~~~i~~AK-kqRk~~~~~-----~~~ltl~~vI~fLq~l~~ 94 (161)
T TIGR02894 43 TAAACGFRWNAYVRKQYEEAIELAK-KQRKELKRE-----AGSLTLQDVISFLQNLKT 94 (161)
T ss_pred cHHHhcchHHHHHHHHHHHHHHHHH-HHHhccccC-----cccCCHHHHHHHHHHHHh
Confidence 4577899999999999999998643 122222221 256999999999998863
No 13
>PF01519 DUF16: Protein of unknown function DUF16; InterPro: IPR002862 Proteins that contain this domain are of unknown function. It appears to be confined to proteins from Mycoplasma pneumoniae [].; PDB: 2BA2_C.
Probab=35.09 E-value=79 Score=27.46 Aligned_cols=25 Identities=48% Similarity=0.504 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHH
Q 018383 135 QIEVQRHLQLRIEAQGKYLQSVLKK 159 (357)
Q Consensus 135 QLEVQRhLQLRIEAQGKYLqsiLEK 159 (357)
|=|.-+.||.+|.+||+-|++|++.
T Consensus 65 QGEqIkel~~e~k~qgktL~~I~~~ 89 (102)
T PF01519_consen 65 QGEQIKELQVEQKAQGKTLQLILKT 89 (102)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445588999999999999999874
No 14
>PF07384 DUF1497: Protein of unknown function (DUF1497); InterPro: IPR009972 This entry is represented by Bacteriophage r1t, Orf17. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family consists of several phage and bacterial proteins of around 59 residues in length. Members of this family seem to be found exclusively in Lactococcus lactis and the bacteriophages that infect this organism. The function of this family is unknown.
Probab=29.82 E-value=42 Score=26.19 Aligned_cols=21 Identities=29% Similarity=0.719 Sum_probs=18.8
Q ss_pred ccChHHHHHHHHHHHHhCCCC
Q 018383 21 KWTPELHQRFVDAVNHLGGPD 41 (357)
Q Consensus 21 rWT~ELH~rFV~AV~qLGG~d 41 (357)
++..|+|..|-+-|..|||.+
T Consensus 37 kfnqem~aefheri~klggk~ 57 (59)
T PF07384_consen 37 KFNQEMQAEFHERIKKLGGKN 57 (59)
T ss_pred HhhHHHHHHHHHHHHHhcccc
Confidence 578999999999999999853
No 15
>PF01388 ARID: ARID/BRIGHT DNA binding domain; InterPro: IPR001606 Members of the recently discovered ARID (AT-rich interaction domain; also known as BRIGHT domain)) family of DNA-binding proteins are found in fungi and invertebrate and vertebrate metazoans. ARID-encoding genes are involved in a variety of biological processes including embryonic development, cell lineage gene regulation and cell cycle control. Although the specific roles of this domain and of ARID-containing proteins in transcriptional regulation are yet to be elucidated, they include both positive and negative transcriptional regulation and a likely involvement in the modification of chromatin structure []. The basic structure of the ARID domain domain appears to be a series of six alpha-helices separated by beta-strands, loops, or turns, but the structured region may extend to an additional helix at either or both ends of the basic six. Based on primary sequence homology, they can be partitioned into three structural classes: Minimal ARID proteins that consist of a core domain formed by six alpha helices; ARID proteins that supplement the core domain with an N-terminal alpha-helix; and Extended-ARID proteins, which contain the core domain and additional alpha-helices at their N- and C-termini. The human SWI-SNF complex protein p270 is an ARID family member with non-sequence-specific DNA binding activity. The ARID consensus and other structural features are common to both p270 and yeast SWI1, suggesting that p270 is a human counterpart of SWI1 []. The approximately 100-residue ARID sequence is present in a series of proteins strongly implicated in the regulation of cell growth, development, and tissue-specific gene expression. Although about a dozen ARID proteins can be identified from database searches, to date, only Bright (a regulator of B-cell-specific gene expression), dead ringer (a Drosophila melanogaster gene product required for normal development), and MRF-2 (which represses expression from the Cytomegalovirus enhancer) have been analyzed directly in regard to their DNA binding properties. Each binds preferentially to AT-rich sites. In contrast, p270 shows no sequence preference in its DNA binding activity, thereby demonstrating that AT-rich binding is not an intrinsic property of ARID domains and that ARID family proteins may be involved in a wider range of DNA interactions [].; GO: 0003677 DNA binding, 0005622 intracellular; PDB: 1C20_A 1KQQ_A 2JRZ_A 2LM1_A 2YQE_A 2JXJ_A 2EH9_A 2CXY_A 2LI6_A 1KN5_A ....
Probab=26.64 E-value=31 Score=27.27 Aligned_cols=46 Identities=35% Similarity=0.559 Sum_probs=31.6
Q ss_pred HHHHHHHHHHHHhCCCCCCCc----hhHHhhhCCCCcc---HHhHHHhhhhhhh
Q 018383 25 ELHQRFVDAVNHLGGPDKATP----KSLMRVMGIPGLT---LYHLKSHLQKYRL 71 (357)
Q Consensus 25 ELH~rFV~AV~qLGG~dkAtP----K~IL~lM~v~GLT---~~hVKSHLQKYRl 71 (357)
+|+.-|. +|...||.++.+. ..|-+.||++.-. ...++.|..+|=+
T Consensus 37 DL~~Ly~-~V~~~GG~~~V~~~~~W~~va~~lg~~~~~~~~~~~L~~~Y~~~L~ 89 (92)
T PF01388_consen 37 DLYKLYK-AVMKRGGFDKVTKNKKWREVARKLGFPPSSTSAAQQLRQHYEKYLL 89 (92)
T ss_dssp SHHHHHH-HHHHHTSHHHHHHHTTHHHHHHHTTS-TTSCHHHHHHHHHHHHHTH
T ss_pred cHHHHHH-HHHhCcCcccCcccchHHHHHHHhCCCCCCCcHHHHHHHHHHHHhH
Confidence 6777775 7779999866554 3577889986532 2568888887743
No 16
>cd07645 I-BAR_IMD_BAIAP2L1 Inverse (I)-BAR, also known as the IRSp53/MIM homology Domain (IMD), of Brain-specific Angiogenesis Inhibitor 1-Associated Protein 2-Like 1. The IMD domain, also called Inverse-Bin/Amphiphysin/Rvs (I-BAR) domain, is a dimerization and lipid-binding module that bends membranes and induces membrane protrusions. BAIAP2L1 (Brain-specific Angiogenesis Inhibitor 1-Associated Protein 2-Like 1) is also known as IRTKS (Insulin Receptor Tyrosine Kinase Substrate). It is widely expressed, serves as a substrate for the insulin receptor, and binds the small GTPase Rac. It plays a role in regulating the actin cytoskeleton and colocalizes with F-actin, cortactin, VASP, and vinculin. BAIAP2L1 expression leads to the formation of short actin bundles, distinct from filopodia-like protrusions induced by the expression of the related protein IRSp53. It contains an N-terminal IMD, an SH3 domain, and a WASP homology 2 (WH2) actin-binding motif at the C-terminus. The IMD domain of
Probab=22.05 E-value=4.1e+02 Score=26.07 Aligned_cols=69 Identities=20% Similarity=0.355 Sum_probs=46.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCchhhhhHHHHHHHHH
Q 018383 116 LQIAQALQVQMEVQRKLHEQIE---------VQRHLQLRIEAQGKYLQSVLKKAQETLAGYSSSSAGVELAKAELSQLVS 186 (357)
Q Consensus 116 ~qi~EALr~QmEVQrrLhEQLE---------VQRhLQLRIEAQGKYLqsiLEKAqe~La~~~~~s~gieaakaeLseL~s 186 (357)
..|.++|.-=-||+|+++.||| +-..|.-.+|..-||+...+.+=|.. |-.-..++|-+.++|--+--
T Consensus 64 keLG~~L~qi~ev~r~i~~~le~~lK~Fh~Ell~~LE~k~elD~kyi~a~~Kkyq~E---~k~k~dsLeK~~seLKK~RR 140 (226)
T cd07645 64 KELGHVLMEISDVHKKLNDSLEENFKKFHREIIAELERKTDLDVKYMTATLKRYQTE---HKNKLDSLEKSQADLKKIRR 140 (226)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHh
Confidence 3455666544488888888876 44578889999999999877764422 33344567777777666555
Q ss_pred h
Q 018383 187 M 187 (357)
Q Consensus 187 ~ 187 (357)
+
T Consensus 141 K 141 (226)
T cd07645 141 K 141 (226)
T ss_pred c
Confidence 4
No 17
>cd07646 I-BAR_IMD_IRSp53 Inverse (I)-BAR, also known as the IRSp53/MIM homology Domain (IMD), of Insulin Receptor tyrosine kinase Substrate p53. The IMD domain, also called Inverse-Bin/Amphiphysin/Rvs (I-BAR) domain, is a dimerization and lipid-binding module that bends membranes and induces membrane protrusions. IRSp53 (Insulin Receptor tyrosine kinase Substrate p53) is also known as BAIAP2 (Brain-specific Angiogenesis Inhibitor 1-Associated Protein 2). It is a scaffolding protein that takes part in many signaling pathways including Cdc42-induced filopodia formation, Rac-mediated lamellipodia extension, and spine morphogenesis. IRSp53 exists as multiple splicing variants that differ mainly at the C-termini. One variant (T-form) is expressed exclusively in human breast cancer cells. The gene encoding IRSp53 is a putative susceptibility gene for Gilles de la Tourette syndrome. IRSp53 contains an N-terminal IMD, a CRIB (Cdc42 and Rac interactive binding motif), an SH3 domain, and a WASP
Probab=21.97 E-value=3.8e+02 Score=26.35 Aligned_cols=68 Identities=29% Similarity=0.453 Sum_probs=44.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCchhhhhHHHHHHHHHh
Q 018383 117 QIAQALQVQMEVQRKLHEQIE---------VQRHLQLRIEAQGKYLQSVLKKAQETLAGYSSSSAGVELAKAELSQLVSM 187 (357)
Q Consensus 117 qi~EALr~QmEVQrrLhEQLE---------VQRhLQLRIEAQGKYLqsiLEKAqe~La~~~~~s~gieaakaeLseL~s~ 187 (357)
.|..||.-=-+|+|.++.+|| +-..|+-++|..-|||...+.+=|-. |-.-..+++-++++|-.|--+
T Consensus 67 eLG~~L~~m~~~hr~i~~~le~~lk~Fh~eli~pLE~k~E~D~k~i~a~~Kky~~e---~k~k~~sleK~qseLKKlRrK 143 (232)
T cd07646 67 ELGDVLFQMAEVHRQIQNQLEEMLKSFHNELLTQLEQKVELDSRYLTAALKKYQTE---HRSKGESLEKCQAELKKLRKK 143 (232)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHh
Confidence 455555444467777666665 34579999999999999877655422 333445677777777665544
No 18
>PHA03185 UL14 tegument protein; Provisional
Probab=21.36 E-value=2.6e+02 Score=27.17 Aligned_cols=39 Identities=23% Similarity=0.266 Sum_probs=26.2
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 018383 114 ESLQIAQALQVQMEVQRKLHEQIEVQRHLQLRIEAQGKYLQSV 156 (357)
Q Consensus 114 ~~~qi~EALr~QmEVQrrLhEQLEVQRhLQLRIEAQGKYLqsi 156 (357)
..+.|..+=|-=.-||.|+.+|.+|..-| +++.|||+.=
T Consensus 63 S~aRve~VeQKar~Iq~rVEeQ~a~r~iL----~~hRRyL~pd 101 (214)
T PHA03185 63 SRARLEMLRQHAACVKIRVEEQAERRDFL----IAHRRYLDPA 101 (214)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHhcChH
Confidence 33444444444446788888888877777 8999999743
Done!