Query 018385
Match_columns 357
No_of_seqs 122 out of 441
Neff 8.2
Searched_HMMs 29240
Date Mon Mar 25 14:26:06 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018385.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/018385hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1ewf_A BPI, bactericidal/perme 100.0 2E-65 6.8E-70 509.1 42.2 332 5-339 115-455 (456)
2 2obd_A Cholesteryl ester trans 100.0 2E-64 6.8E-69 503.5 29.0 328 4-342 124-466 (476)
3 3uv1_A DER F 7 allergen; super 97.1 0.0021 7.3E-08 55.6 9.6 65 3-69 123-193 (196)
4 3h4z_A Maltose-binding peripla 93.9 0.12 4.1E-06 51.9 7.7 65 3-69 493-559 (568)
5 3e8t_A Takeout 1, takeout-like 81.1 11 0.00037 32.4 10.1 70 13-82 136-215 (220)
6 3uv1_A DER F 7 allergen; super 61.6 8.3 0.00029 32.6 4.5 38 40-77 156-194 (196)
7 2rck_A JuvenIle hormone bindin 21.1 3.2E+02 0.011 23.1 7.9 24 11-34 134-161 (225)
8 3h4z_A Maltose-binding peripla 20.7 17 0.00057 36.1 -0.7 36 43-78 529-565 (568)
9 2hgk_A Hypothetical protein YQ 15.5 62 0.0021 25.0 1.6 35 279-315 39-73 (117)
10 1s3a_A NADH-ubiquinone oxidore 13.0 2E+02 0.0068 21.2 3.9 32 183-214 40-71 (102)
No 1
>1ewf_A BPI, bactericidal/permeability-increasing protein; lipid-binding, lipopolysaccharide-binding, antibiotic; HET: PC1; 1.70A {Homo sapiens} SCOP: d.83.1.1 d.83.1.1 PDB: 1bp1_A*
Probab=100.00 E-value=2e-65 Score=509.06 Aligned_cols=332 Identities=22% Similarity=0.399 Sum_probs=311.2
Q ss_pred eEEEee-CC-CCcEEEEeeeceeeeccEEEEEcCc-chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhhccCc
Q 018385 5 LTLGLE-TQ-KGTLKLSLVDCGCYVKDISIKLDGG-ASWLYQGMINAFEEQIVSAVENAITKKLKEGI-SKLDSLLQSLP 80 (357)
Q Consensus 5 ~~~~l~-~~-~G~p~v~~~~C~~~i~~~~v~~~gg-~s~l~n~f~~~~~~~i~~~l~~~ic~~i~~~i-~~ln~~L~~lp 80 (357)
.++.+. |. +|+|+++..+|++++++++++++|+ ++|++|.|.+.+++.|++.+++++|+.|.+.+ +++|+.|+++|
T Consensus 115 ~~~~l~~~~~~G~~~v~~~~C~~~~~~~~i~~~g~~~~~l~n~f~~~i~~~i~~~l~~~iC~~i~~~v~~~ln~~L~~lp 194 (456)
T 1ewf_A 115 ADLKLGSNPTSGKPTITCSSCSSHINSVHVHISKSKVGWLIQLFHKKIESALRNKMNSQVCEKVTNSVSSELQPYFQTLP 194 (456)
T ss_dssp EEEEEEEETTTTEEEEEEEEEEEECCEEEEECSCGGGHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHTHHHHHTTSC
T ss_pred EEEEEeecCCCCceEEEEecCceEeceEEEEEeCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCC
Confidence 334444 66 9999999999999999999999999 99999999999999999999999999999977 67999999999
Q ss_pred ccccccceEEEEEeecCCCeeecceeeeeeeeEEEcCCCCCCCCCCCCCCCCCCCCCCCCCeEEEEechhHHHHHHHHHH
Q 018385 81 KEIPVDDHASLNITFVDNPLLTSSSIEFDINGLFTARKKASIPNYYNSNLQPPVFCSDQSKMLGISLDEAVLNSASALYY 160 (357)
Q Consensus 81 ~~~~~~~~~~ldysl~~~P~it~~~i~~~l~G~~~~~~~~~~~p~~~~~~p~~~~~~~~~~M~~i~lS~y~~NS~l~~~~ 160 (357)
+..++|+.+.+||+++++|.+|+++|+++++|+|++.++...+ |+.|++...+++.++|+++++|||++||++++||
T Consensus 195 ~~~~id~~~~idysl~~~P~it~~~i~~~l~G~~~~~~~~~~~---p~~p~~~~~p~~~~~m~~~~ls~~~~nS~l~~~~ 271 (456)
T 1ewf_A 195 VMTKIDSVAGINYGLVAPPATTAETLDVQMKGEFYSENHHNPP---PFAPPVMEFPAAHDRMVYLGLSDYFFNTAGLVYQ 271 (456)
T ss_dssp SEEECSSSCEEECCBSSCCEECSSEEEEEECCEEECSSCCCCC---SSCCCCCCCCCCCSSSEEEEEEHHHHHHHHHHHH
T ss_pred ceeecCceEEEEEEeecCCcccccEEEEEEEEEEEeCCCCCCC---CCCCCCcCCCCCCCcEEEEEecHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999998887666 4444333345566899999999999999999999
Q ss_pred hcCcceEEe--ccCCCCC--CcchhhHhhhcHHHHhhCCCCceEEEEeeCCCCeEEEEeCcEEEEEEEEEEEEEe-CCCc
Q 018385 161 DAEFMQWTV--DKVPDQS--LLNTAGWRFIIPQLYRKYPNDDMNLNISLSSPPVIRVAEDNIDATVHADLIIDVL-ESGE 235 (357)
Q Consensus 161 ~~g~l~~~v--~~iP~~~--~L~Ts~~~~~iP~l~~~yPn~~~~l~i~~~~~P~v~i~~~~~~v~~~~~v~~~v~-~~~~ 235 (357)
++|.|++++ +++|+.+ +|||+|+|.++|+++++|||+++.+++++.+||.++++++++++.+.+.+++++. ++++
T Consensus 272 ~~g~l~~~it~~~ip~~~~~~L~T~~~~~~iP~l~~~yP~~~l~l~i~~~~~P~v~~~~~~~~v~~~~~v~~~~~~~~~~ 351 (456)
T 1ewf_A 272 EAGVLKMTLRDDMIPKESKFRLTTKFFGTFLPEVAKKFPNMKIQIHVSASTPPHLSVQPTGLTFYPAVDVQAFAVLPNSA 351 (456)
T ss_dssp HTTCSEEEEEGGGSCTTCSCCSBHHHHHTTSSSHHHHSTTCBEEEEEECSSCCEEEEETTEEEEECEEEEEEEEECTTSC
T ss_pred hCCcceEEechhhCCCcCCCeeeehhhhhhchHHHHhCCCCeEEEEEEeCCCCEEEEecCCEEEEEEEEEEEEEECCCCc
Confidence 999999998 6899865 8999999999999999999999999999999999999999999999999999874 6778
Q ss_pred eeeEEEEEEEEEEEEEEEEEccEEEEEEEeceEEEEEeeecCCccccccHHHHHHHHHHHhhHHHHHhhccCCccCCCCC
Q 018385 236 VIPVACISLVIHGSCSVKILRNNLGGSVKLNGFTMSLTWSKIGKLRLYLIQPVVWAVIQTVFVPYVNSHLGQGFPLPIIH 315 (357)
Q Consensus 236 ~~~~~~l~~~~~~~~~~~v~~~~l~~~~~~~~~~l~l~~S~iG~~~~~~L~~~i~~~l~~~~~P~lN~~L~~G~pLP~~~ 315 (357)
..++|++++++++++++++.++++.|+++++++++++++|++|.++++.|+.+++.+++.+++|.+|++|++|||||.++
T Consensus 352 ~~~l~~l~~~~~~~~~~~~~~~~l~~~l~l~~~~l~l~~S~iG~~~~~~l~~~l~~~l~~~~~P~~N~~L~~G~pLP~~~ 431 (456)
T 1ewf_A 352 LASLFLIGMHTTGSMEVSAESNRLVGELKLDRLLLELKHSNIGPFPVELLQDIMNYIVPILVLPRVNEKLQKGFPLPTPA 431 (456)
T ss_dssp EEEEEEEEEECCEEEEEEECSSEEEEEEEECCCEEEEEEESSCCCCGGGGHHHHHHHHHHHTHHHHHHHHHHCEECCCCT
T ss_pred eeeEEEEEEEEEEEEEEEEECCEEEEEEEecceEEEEEecccCCcCHHHHHHHHHHHHHHhhHHHHHHHHcCCeecCCCC
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CeeEeeeEEEEEcCEEEEEeeeeE
Q 018385 316 GFTVKSAEIICSSSKITVCSDVAY 339 (357)
Q Consensus 316 ~~~l~n~~i~~~~~~l~i~~D~~~ 339 (357)
++++.|+++.+++||+++++|++|
T Consensus 432 ~~~~~n~~i~~~~~~l~i~~d~~~ 455 (456)
T 1ewf_A 432 RVQLYNVVLQPHQNFLLFGADVVY 455 (456)
T ss_dssp TEEEEEEEEEEETTEEEEEEEEEE
T ss_pred ceEEEccEEEEECCEEEEEeccee
Confidence 999999999999999999999998
No 2
>2obd_A Cholesteryl ester transfer protein; lipid transfer protein, lipid transport; HET: NDG FU4 2OB PCW EPE 1PE PG4; 2.10A {Homo sapiens}
Probab=100.00 E-value=2e-64 Score=503.46 Aligned_cols=328 Identities=16% Similarity=0.193 Sum_probs=306.0
Q ss_pred eeEEEeeCCCCcEEEEeeeceeeeccEEEEEcCcc--hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCcc
Q 018385 4 GLTLGLETQKGTLKLSLVDCGCYVKDISIKLDGGA--SWLYQGMINAFEEQIVSAVENAITKKLKEGISKLDSLLQSLPK 81 (357)
Q Consensus 4 ~~~~~l~~~~G~p~v~~~~C~~~i~~~~v~~~gg~--s~l~n~f~~~~~~~i~~~l~~~ic~~i~~~i~~ln~~L~~lp~ 81 (357)
.+++.+.|++|+|+++..+|++++++++++++||+ +|+||.|.+.|++.|++.+++++|+.|.+.++++|+.|+++|+
T Consensus 124 ~~~~~L~~~~G~~~v~~~~C~~~i~~v~v~~~g~~lps~l~n~f~~~i~~~i~~~l~~~iC~~i~~~i~~ln~~L~tlp~ 203 (476)
T 2obd_A 124 QINTQLTADSGRVRTDAPDCYLSFHKLLLHLQGEREPGWIKQLFTNFISFTLKLVLKGQICKEINVISNIMADFVQTRAA 203 (476)
T ss_dssp EEEEEEEEETTEEEEEEEEEEEEEEEEEEEETTCCCCSSHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEEEecCCCcEEEEEcccEEEeeeEEEEEECCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCcE
Confidence 33344448899999999999999999999999997 9999999999999999999999999999999889999999999
Q ss_pred cccccceEEEEEeecCCCeeecceeeeeeeeEEE-c--CCCCCCCCCCCCCCCCCCCCCCCCCeEEEEechhHHHHHHHH
Q 018385 82 EIPVDDHASLNITFVDNPLLTSSSIEFDINGLFT-A--RKKASIPNYYNSNLQPPVFCSDQSKMLGISLDEAVLNSASAL 158 (357)
Q Consensus 82 ~~~~~~~~~ldysl~~~P~it~~~i~~~l~G~~~-~--~~~~~~~p~~~~~~p~~~~~~~~~~M~~i~lS~y~~NS~l~~ 158 (357)
..++|+.+.+||+|+++|.+|++||+++++|+|+ + .++...+ ||.| +++ ++++|+++++|||++||++++
T Consensus 204 ~~~id~~~~idysl~~~P~it~~~i~~~l~G~~~~~~~~~~~~~~---pf~p-~~~---~~~~Ml~~~lSey~~nS~~~~ 276 (476)
T 2obd_A 204 SILSDGDIGVDISLTGDPVITASYLESHHKGHFIYKDVSEDLPLP---TFSP-TLL---GDSRMLYFWFSERVFHSLAKV 276 (476)
T ss_dssp HHTCBTTEEEECCBSSCCEECSSEEEEEECCEEEETTBCCCCCCC---EECG-GGS---CSSSSEEEEEEHHHHHHHHHH
T ss_pred EEEEcceEEEEEEecCCCcccccEEEeeeeEEEEeccccCCCCCC---CcCC-CCC---CCCceEEEEEcHHHHHHHHHH
Confidence 9999999999999999999999999999999999 7 4444444 3432 222 678999999999999999999
Q ss_pred HHhcCcceEEe--ccCCCCCCcchhhHhhhcHHHHhhC---CCCceEEEEeeCCCCeEEEEeCcEEEEEEEEEEEEEe-C
Q 018385 159 YYDAEFMQWTV--DKVPDQSLLNTAGWRFIIPQLYRKY---PNDDMNLNISLSSPPVIRVAEDNIDATVHADLIIDVL-E 232 (357)
Q Consensus 159 ~~~~g~l~~~v--~~iP~~~~L~Ts~~~~~iP~l~~~y---Pn~~~~l~i~~~~~P~v~i~~~~~~v~~~~~v~~~v~-~ 232 (357)
||++|.|++++ +++ +. +|||+|++.++|+++++| || ++.+++++.+||.++++++++++.+.+.+++++. +
T Consensus 277 ~~~ag~l~~~it~~~i-~~-~L~T~~~~~~iP~l~~~y~~~Pn-~~~l~i~~~~~P~v~i~~~~~~~~~~~~v~~~v~~~ 353 (476)
T 2obd_A 277 AFQDGRLMLSLMGDEF-KA-VLETWGFNTNQEIFQEVVGGFPS-QAQVTVHCLKMPKISCQNKGVVVDSSVMVKFLFPRP 353 (476)
T ss_dssp HHHTTCSEEEECHHHH-HH-HHHHTTCCTTSGGGHHHHCSCGG-GCEEEEEESSCCEEEEETTEEEEEEEEEEEEEBCCS
T ss_pred HHhCCceEEEEChHHc-cc-eeecchhhccChHHHHHhCCCCC-eEEEEEEeCCCCEEEEecCCEEEEEEEEEEEEEECC
Confidence 99999999999 678 43 899999999999999999 99 9999999999999999999999999999999875 6
Q ss_pred CCceeeEEEEEEEEEEEEEEEEEccEEEEEEEeceEEEEEeeecCCccccccHHHHHHHHHHHhhHHHHHhhccCCc-cC
Q 018385 233 SGEVIPVACISLVIHGSCSVKILRNNLGGSVKLNGFTMSLTWSKIGKLRLYLIQPVVWAVIQTVFVPYVNSHLGQGF-PL 311 (357)
Q Consensus 233 ~~~~~~~~~l~~~~~~~~~~~v~~~~l~~~~~~~~~~l~l~~S~iG~~~~~~L~~~i~~~l~~~~~P~lN~~L~~G~-pL 311 (357)
+++..++|++++++++++++++.++||.|+++++++++++++|+| +++++.|+.+++.+++.+++|.+|++|++|| ||
T Consensus 354 ~~~~~~lf~l~~~~~~~~~~~~~~~kl~~~l~l~~~~l~l~~S~i-~~~~~~l~~~l~~il~~~~~P~~N~~L~~G~~pL 432 (476)
T 2obd_A 354 DQQHSVAYTFEEDIVTTVQASYSKKKLFLSLLDFQITPKTVSNLT-ESSSESIQSFLQSMITAVGIPEVMSRLEVVFTAL 432 (476)
T ss_dssp SGGGCBCEEEEEEEEEEEEEEEETTEEEEEEEEEEEEEEEEEESS-SCCCHHHHHHHHHHHHHTHHHHHHHHHHHHHHHH
T ss_pred CCceeEEEEEEEEEEEEEEEEEeCCEEEEEEEeeeEEEEEeeccc-cCCHHHHHHHHHHHHHHhhHHHHHHHHHhccccC
Confidence 778899999999999999999999999999999999999999999 9999999999999999999999999999999 99
Q ss_pred CCC---CCeeEeeeEEEEEcCEEEEEeeeeEcCc
Q 018385 312 PII---HGFTVKSAEIICSSSKITVCSDVAYADS 342 (357)
Q Consensus 312 P~~---~~~~l~n~~i~~~~~~l~i~~D~~~~~~ 342 (357)
|.+ .++++.|+++.+++||+.+++|++|.++
T Consensus 433 P~~~~l~~~~l~n~~i~~~~~~l~i~~d~~~~~~ 466 (476)
T 2obd_A 433 MNSKGVSLFDIINPEIITRDGFLLLQMDFGFPEH 466 (476)
T ss_dssp HHTTTGGGSEEEEEEEEEETTEEEEEEEEECCHH
T ss_pred CCCccCCceEEECCEEEEECCEEEEEeccCcCcH
Confidence 999 9999999999999999999999999765
No 3
>3uv1_A DER F 7 allergen; super-roll; 2.00A {Dermatophagoides farinae}
Probab=97.12 E-value=0.0021 Score=55.61 Aligned_cols=65 Identities=9% Similarity=0.324 Sum_probs=43.9
Q ss_pred eeeEEEeeCCCCcEEEEeeeceeeeccEEEEEcC-c-chhhHHHHHHHH----HHHHHHHHHHHHHHHHHHHH
Q 018385 3 VGLTLGLETQKGTLKLSLVDCGCYVKDISIKLDG-G-ASWLYQGMINAF----EEQIVSAVENAITKKLKEGI 69 (357)
Q Consensus 3 ~~~~~~l~~~~G~p~v~~~~C~~~i~~~~v~~~g-g-~s~l~n~f~~~~----~~~i~~~l~~~ic~~i~~~i 69 (357)
|.+.+++ +.+|+|++.--.|. .+++++++++| | ++|+++.+.+.+ +..|++.+++.+++.|.+.+
T Consensus 123 v~~~~~~-~~~~~~~l~~f~i~-~l~~i~v~~~Glg~ld~l~~~i~n~~~~l~~~~I~~~ie~~v~~~i~~~l 193 (196)
T 3uv1_A 123 VALSLEI-PDEGNITMTSFEVR-QFANVVNHIGGLSILDPIFGVLSDVLTAIFQDTVRKEMTKVLAPAFKREL 193 (196)
T ss_dssp EEEEEEE-ESSSCCEEEEEEEC-CCSEEEEEETTCCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEEEE-cCCCceeeceecee-eecceEEEEECCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3344444 45788887777776 79999999998 4 678776665555 55556666666666665544
No 4
>3h4z_A Maltose-binding periplasmic protein fused with Al DERP7; MBP fusion, AHA1/BPI domain-like, super roll, sugar T transport, allergen; HET: GLC; 2.35A {Escherichia coli}
Probab=93.86 E-value=0.12 Score=51.87 Aligned_cols=65 Identities=15% Similarity=0.284 Sum_probs=45.9
Q ss_pred eeeEEEeeCCCCcEEEEeeeceeeeccEEEEEcCc--chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018385 3 VGLTLGLETQKGTLKLSLVDCGCYVKDISIKLDGG--ASWLYQGMINAFEEQIVSAVENAITKKLKEGI 69 (357)
Q Consensus 3 ~~~~~~l~~~~G~p~v~~~~C~~~i~~~~v~~~gg--~s~l~n~f~~~~~~~i~~~l~~~ic~~i~~~i 69 (357)
|.+.+.+ ...|.+.++.-... +++++.|+++|- ++|+.|.|...+...++..|.+.+...|.+.+
T Consensus 493 ~~~~~~~-~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 559 (568)
T 3h4z_A 493 VELSLEV-SEEGNMTLTSFEVR-QFANVVNHIGGLSILDPIFAVLSDVLTAIFQDTVRAEMTKVLAPAF 559 (568)
T ss_dssp EEEEEEE-CTTCCEEEEEEEEC-CCSCEEEEETTCCTTSHHHHHHHHHHHHTTTTHHHHHHHHHHHHHH
T ss_pred EEEEEEe-eccceEEeeeeeEE-EecceeEEecCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444 67887777655544 899999999997 79999888877666666666665555555544
No 5
>3e8t_A Takeout 1, takeout-like protein 1; transport protein; HET: UQ8; 1.30A {Epiphyas postvittana} PDB: 3e8w_A*
Probab=81.13 E-value=11 Score=32.39 Aligned_cols=70 Identities=13% Similarity=0.140 Sum_probs=48.1
Q ss_pred CCc--EEEEeeeceeee-ccEEEEEcCc------chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhhccCccc
Q 018385 13 KGT--LKLSLVDCGCYV-KDISIKLDGG------ASWLYQGMINAFEEQIVSAVENAITKKLKEGI-SKLDSLLQSLPKE 82 (357)
Q Consensus 13 ~G~--p~v~~~~C~~~i-~~~~v~~~gg------~s~l~n~f~~~~~~~i~~~l~~~ic~~i~~~i-~~ln~~L~~lp~~ 82 (357)
+|+ ++++--.+...+ +++++++.+- ++...|-|.+.--..+-+.++..+-+.+.+.+ .-+|+.+.++|..
T Consensus 136 ~G~~yl~i~~~~~~~~~~~~~~~~~~nLfng~~~L~~~~n~~iN~nw~~i~~e~~p~i~~~~~~~~~~i~n~if~~~p~~ 215 (220)
T 3e8t_A 136 EGVDHVIFKKYTVTFDVKDNAQFGLTNLFNGNKELSDTMLTFLNQNWKQVSEEFGKPVMEAAAKKIFKNIKHFLAKVPIA 215 (220)
T ss_dssp TSCEEEEEEEEEEEEEEEEEEEEEESSBGGGCHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHH
T ss_pred CCCEEEEEEEEEEEEEECCcEEEEEEcCCCCCHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHH
Confidence 776 788888888899 9999998842 34555555555445555556666666666666 5678888888753
No 6
>3uv1_A DER F 7 allergen; super-roll; 2.00A {Dermatophagoides farinae}
Probab=61.58 E-value=8.3 Score=32.59 Aligned_cols=38 Identities=5% Similarity=0.265 Sum_probs=29.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhhc
Q 018385 40 WLYQGMINAFEEQIVSAVENAITKKLKEGI-SKLDSLLQ 77 (357)
Q Consensus 40 ~l~n~f~~~~~~~i~~~l~~~ic~~i~~~i-~~ln~~L~ 77 (357)
..++.+.+.+.+.+.+.+++++-+.|.+.+ ..+++.|.
T Consensus 156 g~ld~l~~~i~n~~~~l~~~~I~~~ie~~v~~~i~~~l~ 194 (196)
T 3uv1_A 156 SILDPIFGVLSDVLTAIFQDTVRKEMTKVLAPAFKRELE 194 (196)
T ss_dssp CTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 467888888888998888888888888877 45666554
No 7
>2rck_A JuvenIle hormone binding protein; hemolymph, JHBP-fold; HET: NAG; 2.44A {Galleria mellonella}
Probab=21.12 E-value=3.2e+02 Score=23.09 Aligned_cols=24 Identities=17% Similarity=0.333 Sum_probs=17.3
Q ss_pred CC-CCc--EEEEeeeceee-eccEEEEE
Q 018385 11 TQ-KGT--LKLSLVDCGCY-VKDISIKL 34 (357)
Q Consensus 11 ~~-~G~--p~v~~~~C~~~-i~~~~v~~ 34 (357)
.. +|+ .+++--..... ++++++++
T Consensus 134 ~~~~G~~yl~v~~~~v~~~~ig~~~~~~ 161 (225)
T 2rck_A 134 TDDKGVEHYEAGPETVSCEIFGEPTLSV 161 (225)
T ss_dssp CCSSSCCEEEECCCEEEEEECSCCEEEE
T ss_pred EecCCeEEEEEEEEEEEEEEcCcEEEEH
Confidence 44 775 66666666675 89999999
No 8
>3h4z_A Maltose-binding periplasmic protein fused with Al DERP7; MBP fusion, AHA1/BPI domain-like, super roll, sugar T transport, allergen; HET: GLC; 2.35A {Escherichia coli}
Probab=20.66 E-value=17 Score=36.07 Aligned_cols=36 Identities=3% Similarity=0.245 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhhcc
Q 018385 43 QGMINAFEEQIVSAVENAITKKLKEGI-SKLDSLLQS 78 (357)
Q Consensus 43 n~f~~~~~~~i~~~l~~~ic~~i~~~i-~~ln~~L~~ 78 (357)
..+.+.|...|-+.+++.|...|.+.| +.+-+.|..
T Consensus 529 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 565 (568)
T 3h4z_A 529 DPIFAVLSDVLTAIFQDTVRAEMTKVLAPAFKKELER 565 (568)
T ss_dssp SHHHHHHHHHHHHTTTTHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 334444445555555555555555554 344444443
No 9
>2hgk_A Hypothetical protein YQCC; helical bundle, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; NMR {Escherichia coli} SCOP: a.29.17.1
Probab=15.55 E-value=62 Score=24.98 Aligned_cols=35 Identities=23% Similarity=0.363 Sum_probs=25.1
Q ss_pred ccccccHHHHHHHHHHHhhHHHHHhhccCCccCCCCC
Q 018385 279 KLRLYLIQPVVWAVIQTVFVPYVNSHLGQGFPLPIIH 315 (357)
Q Consensus 279 ~~~~~~L~~~i~~~l~~~~~P~lN~~L~~G~pLP~~~ 315 (357)
+|-++.|.. ..=++.+++|.+...+..|-|||.-.
T Consensus 39 PF~vDTm~~--~qWLQwIFIPRM~alie~~~pLP~~~ 73 (117)
T 2hgk_A 39 PFFMDTMEP--LEWLQWVLIPRMHDLLDNKQPLPGAF 73 (117)
T ss_dssp SSCTTTSCT--HHHHTTTHHHHHHHHHHTTCCCCTTC
T ss_pred CcccccCCH--HHHHHHHHHHHHHHHHHCCCCCCccc
Confidence 455555542 23357789999999999999999643
No 10
>1s3a_A NADH-ubiquinone oxidoreductase B8 subunit; CI-B8, ndufa2, complex I; NMR {Homo sapiens} SCOP: c.47.1.22
Probab=13.00 E-value=2e+02 Score=21.16 Aligned_cols=32 Identities=9% Similarity=0.042 Sum_probs=25.6
Q ss_pred HhhhcHHHHhhCCCCceEEEEeeCCCCeEEEE
Q 018385 183 WRFIIPQLYRKYPNDDMNLNISLSSPPVIRVA 214 (357)
Q Consensus 183 ~~~~iP~l~~~yPn~~~~l~i~~~~~P~v~i~ 214 (357)
+..-+|++.+..|+.++.++-.....|.+...
T Consensus 40 l~~~l~~~k~~NP~v~i~v~~~~~~~P~i~a~ 71 (102)
T 1s3a_A 40 IEKRYVELKKANPDLPILIRECSDVQPKLWAR 71 (102)
T ss_dssp HHHTHHHHHHHSTTCCEEEECCCSSSCEEEEE
T ss_pred HHHhhHHHHHHCCCceEEEEECCCCCCEEEEE
Confidence 56779999999999998887666668877654
Done!