BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 018386
         (357 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3POH|A Chain A, Crystal Structure Of An Endo-Beta-N-Acetylglucosaminidase
           (Bt_3987) From Bacteroides Thetaiotaomicron Vpi-5482 At
           1.55 A Resolution
          Length = 451

 Score = 30.0 bits (66), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 26/91 (28%), Positives = 43/91 (47%), Gaps = 5/91 (5%)

Query: 131 IEVSAFLDERAFLWNQYKVMENDLTSKINSKRAEVDRANERIEKLLASTEQLQLSNNEKD 190
           +EV   +DE A+      + EN+   + + K   V +  E   +  A+T +  LS     
Sbjct: 4   LEVGKNIDESAYS----GIYENNAYLR-DGKSNLVSKVVELHGETYATTVKXGLSKTPNT 58

Query: 191 ETIAKLKTQIAQMETGSKKWNTEISRLTQEL 221
            T AK+K   A +ET +K  NT+ +   Q+L
Sbjct: 59  ATSAKVKIDAAYLETYNKAHNTDFALYPQDL 89


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.311    0.126    0.338 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,093,369
Number of Sequences: 62578
Number of extensions: 342193
Number of successful extensions: 971
Number of sequences better than 100.0: 22
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 16
Number of HSP's that attempted gapping in prelim test: 955
Number of HSP's gapped (non-prelim): 31
length of query: 357
length of database: 14,973,337
effective HSP length: 100
effective length of query: 257
effective length of database: 8,715,537
effective search space: 2239893009
effective search space used: 2239893009
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 52 (24.6 bits)