BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 018386
(357 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q8IBP1|YPF16_PLAF7 Uncharacterized protein PF07_0086 OS=Plasmodium falciparum (isolate
3D7) GN=PF07_0086 PE=4 SV=1
Length = 3429
Score = 43.5 bits (101), Expect = 0.002, Method: Composition-based stats.
Identities = 19/78 (24%), Positives = 41/78 (52%)
Query: 145 NQYKVMENDLTSKINSKRAEVDRANERIEKLLASTEQLQLSNNEKDETIAKLKTQIAQME 204
N+ K EN++ ++N EV++ NE + K+ ++ N+ DE + K+ ++ +M
Sbjct: 772 NEKKKGENEMNKEVNKMNEEVNKMNEEVNKMNEEVNKMNKEVNKMDEEVNKMNKEVNKMN 831
Query: 205 TGSKKWNTEISRLTQELE 222
S + N E + + ++ E
Sbjct: 832 KESNEMNKEANEMNKDEE 849
>sp|Q27802|DYHC2_TRIGR Cytoplasmic dynein 2 heavy chain 1 OS=Tripneustes gratilla GN=DYH1B
PE=2 SV=2
Length = 4318
Score = 38.1 bits (87), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 33/62 (53%)
Query: 165 VDRANERIEKLLASTEQLQLSNNEKDETIAKLKTQIAQMETGSKKWNTEISRLTQELELL 224
VD R +KL +L+ ++ ETIA + I ++E ++WN ++S L ELE L
Sbjct: 3148 VDEYKRRFQKLNEEAAKLKYELEKEQETIASAENLIGKLEGEYQRWNNQVSELNTELETL 3207
Query: 225 RK 226
K
Sbjct: 3208 PK 3209
>sp|P16328|FLID_SALTY Flagellar hook-associated protein 2 OS=Salmonella typhimurium
(strain LT2 / SGSC1412 / ATCC 700720) GN=fliD PE=1 SV=2
Length = 467
Score = 37.4 bits (85), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 23/64 (35%), Positives = 34/64 (53%), Gaps = 1/64 (1%)
Query: 165 VDRANERIEKLLAS-TEQLQLSNNEKDETIAKLKTQIAQMETGSKKWNTEISRLTQELEL 223
+D A + + L S T+Q +N DET+A+ K Q Q++T K N S LTQ+
Sbjct: 404 IDNAQDNVNATLKSLTKQYLSVSNSIDETVARYKAQFTQLDTMMSKLNNTSSYLTQQFTA 463
Query: 224 LRKS 227
+ KS
Sbjct: 464 MNKS 467
>sp|Q21952|NUF2_CAEEL Kinetochore protein Nuf2 homolog OS=Caenorhabditis elegans
GN=him-10 PE=1 SV=1
Length = 490
Score = 35.4 bits (80), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 35/143 (24%), Positives = 68/143 (47%), Gaps = 9/143 (6%)
Query: 164 EVDRANERIEKLLASTEQLQLSNNEKDET----IAKLKTQIAQMETGSKKWNTEISRLTQ 219
E++ A +R+ + + EQL++ + +K E I ++ QIA ++T + EI++ Q
Sbjct: 335 EMETAQKRLVEQSETHEQLRIEHTQKSEERQRRIEEITEQIANLKTSQPDVSQEIAKKKQ 394
Query: 220 ELELLRKSRTASDTPVLNRCT-RIAGATTSNA----GDSVQNRSSTAGIKGRLRKSGSSS 274
EL L+ + + + + + N C +A NA V +TA + R S +
Sbjct: 395 ELLALKNAHSETISQITNSCQDAVAKFAKLNAMFKETQKVAFEKNTAAAREMERLKSSLT 454
Query: 275 VTPLSNYSTTTAQSLGGKNGDNV 297
LS+Y+ ++ G+N +N
Sbjct: 455 GRLLSDYTFGSSTIDAGENTENC 477
>sp|P02567|MYO1_CAEEL Myosin-1 OS=Caenorhabditis elegans GN=let-75 PE=2 SV=3
Length = 1938
Score = 35.0 bits (79), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 49/170 (28%), Positives = 75/170 (44%), Gaps = 28/170 (16%)
Query: 72 AQELIHLLDAAKSDMVVGLKLREASLLKLMLEYTDDQLADFMAWFDLLRQKPKDGEPKSI 131
AQE I L A K + LK +EA + L + D+Q A + L ++ K+ + I
Sbjct: 1069 AQETIDELSAIKLETDASLKKKEADIHALGVRIEDEQ-----ALANRLTRQSKENAQRII 1123
Query: 132 EVSAFLDERAFLWNQYKVMENDLTSKINSKRAEV----DRANERIEKLLASTEQLQLSNN 187
E+ L+ E SK + RAE+ D NER+++ E Q +N
Sbjct: 1124 EIEDELEH-----------ERQSRSKADRARAELQRELDELNERLDEQNKQLEIQQDNNK 1172
Query: 188 EKDETIAKLKTQI--------AQMETGSKKWNTEISRLTQELELLRKSRT 229
+KD I K + + QM +K N +IS LT L+ L+KS+
Sbjct: 1173 KKDSEIIKFRRDLDEKNMANEDQMAMIRRKNNDQISALTNTLDALQKSKA 1222
>sp|A3KNA5|FIL1L_DANRE Filamin A-interacting protein 1-like OS=Danio rerio GN=filip1l PE=2
SV=1
Length = 1129
Score = 32.7 bits (73), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 39/75 (52%), Gaps = 11/75 (14%)
Query: 136 FLDERAFLWNQYKVMENDLTSKINSKRAEVDRANERIEKLLAST-----------EQLQL 184
+DER + + K+ME+ + + +AE D+ N EKL+ + E++ +
Sbjct: 492 LVDERKAMAEKLKMMEDKVQNSTGKLQAEQDKVNTVTEKLIEESKKTLRSKAELEEKMCV 551
Query: 185 SNNEKDETIAKLKTQ 199
+ E+DE AKLKT+
Sbjct: 552 ATRERDELKAKLKTE 566
>sp|Q49YA7|TIG_STAS1 Trigger factor OS=Staphylococcus saprophyticus subsp. saprophyticus
(strain ATCC 15305 / DSM 20229) GN=tig PE=3 SV=1
Length = 436
Score = 32.7 bits (73), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 40/137 (29%), Positives = 59/137 (43%), Gaps = 22/137 (16%)
Query: 87 VVGLKLREASLLKLML--EYTDDQLADFMAWFDLLRQKPKDGEPKSIEVSAFLDERAFLW 144
+VG+K E + + EY ++LA A F K K E K +V DE A
Sbjct: 204 LVGVKTGEEKDVNVTFPEEYHAEELAGKEATF-----KTKVNEIKYKDVPELTDEIA--- 255
Query: 145 NQYKVMENDLTSKINSKRAEVDRANERIEKLLASTEQLQLSNNEKDETIAKLKTQIAQME 204
N+L S+ N+ VD E + K L ++ NN+K+E I K A ++
Sbjct: 256 -------NELDSEANT----VDEYKENLRKRLTEQKETDAENNQKEEAINKAANN-ASID 303
Query: 205 TGSKKWNTEISRLTQEL 221
NTE+ R+ QE
Sbjct: 304 VPDAMINTELDRMVQEF 320
>sp|Q54G05|LRRX1_DICDI Putative leucine-rich repeat-containing protein DDB_G0290503
OS=Dictyostelium discoideum GN=DDB_G0290503 PE=4 SV=1
Length = 1492
Score = 32.0 bits (71), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 33/130 (25%), Positives = 72/130 (55%), Gaps = 15/130 (11%)
Query: 132 EVSAFLDERAFLWNQYKVMEND------LTSKINSKRAEVDRANERIEKLLASTEQLQLS 185
E+ + L+E+ NQ ++EN+ L SK+N K+ E+ N+ IE +S+++LQ
Sbjct: 705 ELQSKLNEKEININQ--LIENNQSSLDELQSKLNEKQNEI---NQLIENNQSSSDELQSK 759
Query: 186 NNEKDETIAKLKTQIAQM----ETGSKKWNTEISRLTQELELLRKSRTASDTPVLNRCTR 241
NEK + I++L++++ ++ E+ S + +++ +L+ EL+ + + D+ ++ +
Sbjct: 760 LNEKHQEISELQSKLNELIENNESSSDELQSKLIQLSDELKEKDEKLKSLDSIIIENQEK 819
Query: 242 IAGATTSNAG 251
+ T SN
Sbjct: 820 LVQLTKSNQD 829
>sp|Q91ZU6|DYST_MOUSE Dystonin OS=Mus musculus GN=Dst PE=1 SV=1
Length = 7389
Score = 32.0 bits (71), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 43/161 (26%), Positives = 75/161 (46%), Gaps = 26/161 (16%)
Query: 111 DFMAWFDLLRQKPKDGEPKSIEVSAFLDERAFLWNQYKVMENDLTSKINSKRAEVDRANE 170
DF AW D +++ +D P +SA LD V+E+ L S+ + + +++N
Sbjct: 4783 DFQAWLDAKKEEQRDSPP----ISAKLD----------VLESLLNSQKDFGKTFTEQSN- 4827
Query: 171 RIEKLLASTEQLQLSNNEKDETIAKLKTQIAQMETGSKKWNTEI----SRLTQELELLRK 226
EK ++ E L L ++ A L+ Q+ M+T ++ ++ +L LE K
Sbjct: 4828 IYEKTISEGENLLLKTQGAEK--AALQLQLNTMKTDWDRFRKQVKEREEKLKDSLEKALK 4885
Query: 227 SRTASDT--PVLNRCTR-IAGATTSNAGDSVQNRSSTAGIK 264
R +T P ++RC + G T S D ++ SS A +K
Sbjct: 4886 YREQVETLRPWIDRCQHSLDGVTFSL--DPTESESSIAELK 4924
>sp|Q9QYE6|GOGA5_MOUSE Golgin subfamily A member 5 OS=Mus musculus GN=Golga5 PE=1 SV=2
Length = 729
Score = 31.6 bits (70), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 36/140 (25%), Positives = 66/140 (47%), Gaps = 13/140 (9%)
Query: 146 QYKVMENDLTSKINSKRAEVDRANERIEKLLASTEQLQLSNNEKDE---TIAKLKTQIAQ 202
+++ ME DL N+ ++ + E I+KL LSN+ + E + +L + Q
Sbjct: 539 EFRYMEEDLHRTKNTLQSRIKDREEEIQKLRNQLTNKTLSNSSQSELESRLHQLTETLIQ 598
Query: 203 METGSKKWNTEISRLTQELELLRKS-RTASDTPVLNRCTRIAGATTSNAGDSVQN----- 256
+T + +TE + L +LE L + +AS P ++G S G ++N
Sbjct: 599 KQTMLESLSTEKNSLVFQLERLEQQVHSASSGPNSGSAINMSG-VDSGEGTRLRNVPVLF 657
Query: 257 ---RSSTAGIKGRLRKSGSS 273
++ AG+ G++RK+ SS
Sbjct: 658 NDTETNLAGMYGKVRKAASS 677
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.311 0.126 0.338
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 116,800,093
Number of Sequences: 539616
Number of extensions: 4554635
Number of successful extensions: 20136
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 104
Number of HSP's successfully gapped in prelim test: 727
Number of HSP's that attempted gapping in prelim test: 18287
Number of HSP's gapped (non-prelim): 2393
length of query: 357
length of database: 191,569,459
effective HSP length: 119
effective length of query: 238
effective length of database: 127,355,155
effective search space: 30310526890
effective search space used: 30310526890
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 62 (28.5 bits)