Query 018386
Match_columns 357
No_of_seqs 22 out of 24
Neff 2.8
Searched_HMMs 46136
Date Fri Mar 29 08:35:10 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018386.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/018386hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0996 Structural maintenance 97.2 0.0086 1.9E-07 67.3 14.8 224 95-340 449-699 (1293)
2 PRK11637 AmiB activator; Provi 96.9 0.21 4.6E-06 49.4 20.7 82 144-225 161-253 (428)
3 PHA02562 46 endonuclease subun 96.9 0.55 1.2E-05 46.8 25.7 116 107-224 269-391 (562)
4 PF00038 Filament: Intermediat 96.8 0.2 4.4E-06 46.7 18.3 193 29-226 18-276 (312)
5 PF10174 Cast: RIM-binding pro 96.7 0.15 3.3E-06 55.6 18.9 200 21-229 356-586 (775)
6 PHA02562 46 endonuclease subun 96.4 0.12 2.5E-06 51.6 15.2 105 106-214 298-402 (562)
7 TIGR02169 SMC_prok_A chromosom 96.4 0.7 1.5E-05 49.3 21.4 60 165-224 401-460 (1164)
8 PF10174 Cast: RIM-binding pro 96.3 0.84 1.8E-05 50.0 22.0 95 127-225 297-405 (775)
9 TIGR02169 SMC_prok_A chromosom 96.2 0.94 2E-05 48.3 21.1 54 163-216 420-473 (1164)
10 KOG4673 Transcription factor T 96.1 0.47 1E-05 52.0 18.6 107 109-229 404-512 (961)
11 PRK03918 chromosome segregatio 95.8 2.8 6E-05 44.4 22.2 30 196-225 403-432 (880)
12 TIGR02168 SMC_prok_B chromosom 95.5 2 4.3E-05 45.6 19.7 95 133-227 812-909 (1179)
13 KOG0933 Structural maintenance 95.4 0.93 2E-05 51.3 17.8 141 23-201 678-825 (1174)
14 KOG0963 Transcription factor/C 95.4 1.7 3.6E-05 46.9 18.9 150 49-201 177-341 (629)
15 KOG0996 Structural maintenance 94.9 1.2 2.5E-05 51.1 16.9 113 107-229 858-1008(1293)
16 PRK02224 chromosome segregatio 94.7 7.3 0.00016 41.6 22.3 17 209-225 409-425 (880)
17 PRK02224 chromosome segregatio 94.4 6.5 0.00014 42.0 20.3 56 174-229 346-401 (880)
18 COG1196 Smc Chromosome segrega 94.3 2.9 6.3E-05 46.9 18.1 69 156-224 411-486 (1163)
19 KOG0250 DNA repair protein RAD 93.6 12 0.00026 42.9 20.9 206 22-230 238-468 (1074)
20 TIGR03185 DNA_S_dndD DNA sulfu 93.5 12 0.00025 39.5 21.4 31 193-223 437-467 (650)
21 PF12718 Tropomyosin_1: Tropom 93.4 3.9 8.5E-05 35.9 13.9 139 45-226 5-143 (143)
22 KOG0994 Extracellular matrix g 93.3 9.5 0.0002 44.6 19.7 126 101-228 1613-1747(1758)
23 PF05701 WEMBL: Weak chloropla 93.0 13 0.00028 38.6 19.9 132 91-226 209-351 (522)
24 KOG0977 Nuclear envelope prote 92.8 5.4 0.00012 42.6 16.2 64 163-226 296-370 (546)
25 TIGR00606 rad50 rad50. This fa 92.8 21 0.00045 40.8 21.7 19 107-125 799-817 (1311)
26 COG1196 Smc Chromosome segrega 92.6 15 0.00033 41.4 20.2 42 260-306 514-555 (1163)
27 KOG1850 Myosin-like coiled-coi 92.5 14 0.00031 37.8 19.0 134 110-243 211-350 (391)
28 COG2433 Uncharacterized conser 92.4 0.42 9.1E-06 51.4 7.7 114 202-342 485-607 (652)
29 TIGR00606 rad50 rad50. This fa 92.2 25 0.00055 40.2 22.8 67 158-226 1000-1068(1311)
30 PF00038 Filament: Intermediat 92.0 11 0.00024 35.4 20.1 201 19-226 51-290 (312)
31 TIGR01843 type_I_hlyD type I s 91.8 12 0.00026 35.6 16.6 31 209-241 250-280 (423)
32 KOG0161 Myosin class II heavy 91.7 18 0.0004 43.7 20.3 71 159-229 1044-1121(1930)
33 PF12329 TMF_DNA_bd: TATA elem 91.7 0.72 1.6E-05 36.6 6.4 68 153-227 2-69 (74)
34 PRK11637 AmiB activator; Provi 91.6 16 0.00034 36.5 23.4 28 192-219 227-254 (428)
35 PF00261 Tropomyosin: Tropomyo 91.5 5.7 0.00012 36.8 13.1 32 191-222 197-228 (237)
36 PF07888 CALCOCO1: Calcium bin 91.5 11 0.00023 40.4 16.6 18 28-45 149-166 (546)
37 KOG4807 F-actin binding protei 91.3 9 0.0002 40.3 15.4 183 22-225 298-539 (593)
38 PRK03918 chromosome segregatio 90.9 25 0.00054 37.5 22.2 12 143-154 305-316 (880)
39 PF05701 WEMBL: Weak chloropla 90.7 23 0.00051 36.8 19.9 199 23-227 219-429 (522)
40 KOG4674 Uncharacterized conser 90.3 51 0.0011 40.1 22.0 41 186-226 1245-1285(1822)
41 PF06005 DUF904: Protein of un 90.0 2.3 5E-05 34.0 7.9 66 158-223 6-71 (72)
42 PF07888 CALCOCO1: Calcium bin 90.0 31 0.00067 37.1 20.2 25 46-70 212-236 (546)
43 PF12718 Tropomyosin_1: Tropom 89.4 1.6 3.5E-05 38.3 7.3 70 158-227 2-71 (143)
44 KOG1029 Endocytic adaptor prot 89.1 36 0.00078 38.7 18.4 152 14-184 411-584 (1118)
45 PF13863 DUF4200: Domain of un 88.8 8.3 0.00018 31.7 10.7 80 142-228 32-111 (126)
46 KOG0161 Myosin class II heavy 88.4 51 0.0011 40.2 20.3 27 153-179 1066-1092(1930)
47 KOG4643 Uncharacterized coiled 88.3 48 0.001 38.4 19.0 33 128-161 499-531 (1195)
48 PF04156 IncA: IncA protein; 87.9 6 0.00013 34.7 9.9 41 139-183 131-171 (191)
49 PF06818 Fez1: Fez1; InterPro 87.8 2.7 5.9E-05 39.7 8.0 88 115-202 11-105 (202)
50 PRK09039 hypothetical protein; 87.8 11 0.00023 37.3 12.5 66 155-227 122-187 (343)
51 KOG0976 Rho/Rac1-interacting s 87.6 59 0.0013 37.3 19.7 117 116-232 168-311 (1265)
52 PF09726 Macoilin: Transmembra 87.4 49 0.0011 36.2 18.5 33 204-241 635-667 (697)
53 KOG0933 Structural maintenance 87.1 51 0.0011 38.2 18.3 119 108-226 788-927 (1174)
54 KOG0980 Actin-binding protein 87.0 47 0.001 37.9 17.9 61 148-208 486-547 (980)
55 PF07106 TBPIP: Tat binding pr 87.0 1.6 3.5E-05 38.2 5.8 69 165-234 74-144 (169)
56 KOG0964 Structural maintenance 86.8 68 0.0015 37.3 19.2 209 3-223 773-1012(1200)
57 PF05667 DUF812: Protein of un 86.4 52 0.0011 35.5 20.0 60 161-220 438-513 (594)
58 KOG0971 Microtubule-associated 85.3 64 0.0014 37.3 17.8 117 92-223 416-550 (1243)
59 COG3883 Uncharacterized protei 84.5 4.3 9.4E-05 39.7 7.8 60 160-219 42-101 (265)
60 PF00261 Tropomyosin: Tropomyo 84.5 34 0.00075 31.8 17.9 92 24-123 66-157 (237)
61 KOG1029 Endocytic adaptor prot 83.9 86 0.0019 35.9 22.3 47 179-225 530-576 (1118)
62 PF12128 DUF3584: Protein of u 83.9 87 0.0019 35.9 20.3 17 140-156 415-431 (1201)
63 PF11932 DUF3450: Protein of u 83.6 4.7 0.0001 37.5 7.4 35 194-228 66-100 (251)
64 PRK04778 septation ring format 83.5 62 0.0013 33.9 19.5 33 93-125 310-342 (569)
65 PF15619 Lebercilin: Ciliary p 83.5 13 0.00029 34.4 10.2 70 156-231 89-158 (194)
66 PF08317 Spc7: Spc7 kinetochor 83.0 48 0.001 32.3 18.4 19 211-229 275-293 (325)
67 PRK04863 mukB cell division pr 82.9 58 0.0013 38.7 17.1 26 130-155 476-506 (1486)
68 PF09787 Golgin_A5: Golgin sub 82.8 63 0.0014 33.5 15.9 91 55-149 289-380 (511)
69 PF10168 Nup88: Nuclear pore c 82.6 82 0.0018 34.6 17.6 66 158-226 648-713 (717)
70 PF00170 bZIP_1: bZIP transcri 82.5 6.3 0.00014 29.6 6.4 55 172-226 7-61 (64)
71 TIGR01000 bacteriocin_acc bact 82.2 59 0.0013 32.7 16.7 25 23-47 98-122 (457)
72 KOG0018 Structural maintenance 82.2 95 0.0021 36.2 17.8 112 3-120 637-752 (1141)
73 KOG0250 DNA repair protein RAD 82.1 1.1E+02 0.0023 35.7 21.8 32 22-53 221-252 (1074)
74 PF10212 TTKRSYEDQ: Predicted 82.0 37 0.0008 36.3 13.9 99 110-218 416-514 (518)
75 KOG0995 Centromere-associated 81.9 84 0.0018 34.3 16.9 176 27-226 306-506 (581)
76 cd07658 F-BAR_NOSTRIN The F-BA 81.2 48 0.001 31.0 14.1 51 191-241 171-221 (239)
77 KOG0995 Centromere-associated 81.0 10 0.00023 40.8 9.6 27 202-228 336-362 (581)
78 PF09730 BicD: Microtubule-ass 80.4 1E+02 0.0022 34.3 19.7 72 170-241 398-480 (717)
79 PF11559 ADIP: Afadin- and alp 80.0 15 0.00033 31.5 8.7 84 134-221 62-149 (151)
80 PF09403 FadA: Adhesion protei 79.8 23 0.00049 31.2 9.8 80 143-222 25-117 (126)
81 PF12128 DUF3584: Protein of u 79.7 1.2E+02 0.0026 34.7 22.0 30 130-159 358-387 (1201)
82 KOG1899 LAR transmembrane tyro 78.6 1.2E+02 0.0026 34.1 16.4 61 154-228 229-290 (861)
83 PF04156 IncA: IncA protein; 78.4 25 0.00055 30.8 9.8 27 157-183 124-150 (191)
84 PF15290 Syntaphilin: Golgi-lo 78.4 7.2 0.00016 39.0 7.0 55 174-232 76-144 (305)
85 PRK04778 septation ring format 78.3 93 0.002 32.6 15.7 56 171-226 356-411 (569)
86 KOG0977 Nuclear envelope prote 78.3 1.1E+02 0.0023 33.2 17.7 42 193-234 305-346 (546)
87 KOG0979 Structural maintenance 78.2 1.4E+02 0.0031 34.7 19.2 19 29-47 181-199 (1072)
88 PF11559 ADIP: Afadin- and alp 78.0 27 0.00058 30.0 9.6 65 133-201 82-150 (151)
89 PF09728 Taxilin: Myosin-like 77.2 78 0.0017 31.2 20.5 69 110-178 110-182 (309)
90 KOG4677 Golgi integral membran 77.2 65 0.0014 34.6 13.7 167 20-186 277-468 (554)
91 PF05266 DUF724: Protein of un 77.1 21 0.00046 33.0 9.3 55 162-223 123-184 (190)
92 PF05667 DUF812: Protein of un 77.0 31 0.00068 37.0 11.7 40 188-227 444-483 (594)
93 KOG0963 Transcription factor/C 76.9 1.2E+02 0.0027 33.3 18.6 24 200-223 319-342 (629)
94 PF12325 TMF_TATA_bd: TATA ele 76.8 32 0.00069 30.0 9.7 64 164-227 45-111 (120)
95 PF10211 Ax_dynein_light: Axon 75.8 29 0.00064 31.7 9.8 103 112-224 64-182 (189)
96 smart00787 Spc7 Spc7 kinetocho 75.7 71 0.0015 31.7 13.0 63 171-233 226-292 (312)
97 COG0419 SbcC ATPase involved i 75.3 1.4E+02 0.003 33.0 20.0 19 144-162 625-643 (908)
98 KOG4673 Transcription factor T 74.2 1.6E+02 0.0035 33.4 19.1 179 20-218 358-543 (961)
99 cd00632 Prefoldin_beta Prefold 73.9 26 0.00056 28.7 8.1 82 144-226 5-98 (105)
100 COG5185 HEC1 Protein involved 73.8 48 0.001 35.8 11.9 47 144-190 318-364 (622)
101 PLN03188 kinesin-12 family pro 73.8 83 0.0018 37.2 14.5 98 128-241 1170-1271(1320)
102 smart00338 BRLZ basic region l 73.7 14 0.00031 27.7 6.1 54 173-226 8-61 (65)
103 PF10186 Atg14: UV radiation r 72.2 26 0.00057 31.9 8.6 74 129-202 25-102 (302)
104 PF14662 CCDC155: Coiled-coil 72.1 9 0.0002 36.2 5.6 54 171-224 2-55 (193)
105 PF04111 APG6: Autophagy prote 71.4 34 0.00073 33.6 9.6 98 130-244 49-146 (314)
106 PRK01156 chromosome segregatio 70.9 1.6E+02 0.0035 32.0 18.7 50 192-241 410-460 (895)
107 TIGR03495 phage_LysB phage lys 70.4 44 0.00096 29.9 9.3 88 141-232 15-102 (135)
108 PRK10884 SH3 domain-containing 70.0 27 0.00059 32.7 8.3 48 179-226 120-167 (206)
109 KOG4677 Golgi integral membran 69.0 1.7E+02 0.0038 31.5 18.7 27 130-156 308-341 (554)
110 PF14931 IFT20: Intraflagellar 68.6 32 0.0007 29.9 7.9 42 180-228 69-110 (120)
111 KOG0999 Microtubule-associated 68.0 34 0.00073 37.6 9.4 119 104-226 5-142 (772)
112 PF11500 Cut12: Spindle pole b 68.0 22 0.00047 32.5 7.0 67 165-231 79-145 (152)
113 PF15254 CCDC14: Coiled-coil d 68.0 40 0.00086 38.0 10.1 94 108-202 395-505 (861)
114 KOG4603 TBP-1 interacting prot 67.8 22 0.00047 33.8 7.1 71 163-234 79-151 (201)
115 PF12325 TMF_TATA_bd: TATA ele 67.4 14 0.00031 32.1 5.5 62 154-226 21-82 (120)
116 PF04859 DUF641: Plant protein 66.7 11 0.00023 33.6 4.7 33 171-203 88-120 (131)
117 KOG0971 Microtubule-associated 66.4 1.4E+02 0.003 34.9 13.8 81 146-226 301-410 (1243)
118 TIGR00634 recN DNA repair prot 66.4 32 0.00069 35.8 8.7 45 161-205 159-203 (563)
119 PF05010 TACC: Transforming ac 66.3 57 0.0012 30.8 9.6 94 130-223 68-186 (207)
120 PF04859 DUF641: Plant protein 66.2 10 0.00023 33.6 4.5 49 173-228 76-124 (131)
121 PF10146 zf-C4H2: Zinc finger- 66.1 57 0.0012 31.2 9.7 50 129-182 37-86 (230)
122 smart00787 Spc7 Spc7 kinetocho 65.9 1.2E+02 0.0026 30.1 12.2 46 157-205 240-285 (312)
123 PF08317 Spc7: Spc7 kinetochor 65.7 1.4E+02 0.003 29.2 15.8 38 163-200 216-253 (325)
124 PF13815 Dzip-like_N: Iguana/D 65.4 19 0.00042 30.3 5.8 54 168-221 64-117 (118)
125 KOG1937 Uncharacterized conser 65.2 1.5E+02 0.0032 31.9 13.2 37 9-50 226-262 (521)
126 PF05557 MAD: Mitotic checkpoi 65.1 5 0.00011 42.7 2.8 33 191-223 503-535 (722)
127 TIGR03185 DNA_S_dndD DNA sulfu 65.0 1.9E+02 0.0042 30.6 21.0 10 92-101 327-336 (650)
128 PF14988 DUF4515: Domain of un 63.1 43 0.00094 31.3 8.2 48 179-226 49-99 (206)
129 PF09728 Taxilin: Myosin-like 62.8 1.6E+02 0.0035 29.0 18.8 75 108-196 203-277 (309)
130 PF15070 GOLGA2L5: Putative go 62.7 2.3E+02 0.0051 30.8 15.4 21 163-183 153-173 (617)
131 PF11544 Spc42p: Spindle pole 62.6 20 0.00043 29.6 5.2 54 174-227 2-55 (76)
132 TIGR01005 eps_transp_fam exopo 62.6 2.2E+02 0.0048 30.5 18.8 32 202-233 380-411 (754)
133 PRK10884 SH3 domain-containing 62.4 34 0.00074 32.0 7.4 38 191-228 118-155 (206)
134 PF10046 BLOC1_2: Biogenesis o 61.9 85 0.0018 25.9 8.8 51 173-223 48-98 (99)
135 PRK01156 chromosome segregatio 61.7 2.4E+02 0.0053 30.7 21.2 13 275-287 796-808 (895)
136 PF15294 Leu_zip: Leucine zipp 61.6 50 0.0011 32.8 8.6 94 129-224 130-227 (278)
137 COG4487 Uncharacterized protei 61.5 52 0.0011 34.6 9.1 32 170-201 93-124 (438)
138 KOG4657 Uncharacterized conser 61.5 72 0.0016 31.4 9.5 10 143-152 24-33 (246)
139 PF10186 Atg14: UV radiation r 60.7 1.3E+02 0.0029 27.4 10.8 70 160-229 74-150 (302)
140 KOG0243 Kinesin-like protein [ 60.7 3.3E+02 0.0072 31.9 19.4 126 94-233 484-614 (1041)
141 PF05911 DUF869: Plant protein 60.1 73 0.0016 35.5 10.4 65 159-230 585-649 (769)
142 KOG1962 B-cell receptor-associ 60.0 23 0.0005 34.0 5.9 45 182-226 163-207 (216)
143 COG0216 PrfA Protein chain rel 59.8 59 0.0013 33.5 9.0 89 128-228 14-106 (363)
144 PF05529 Bap31: B-cell recepto 59.7 36 0.00077 30.4 6.8 35 183-224 153-187 (192)
145 PF13166 AAA_13: AAA domain 59.4 2.3E+02 0.0051 29.7 15.6 35 193-227 419-453 (712)
146 PF11932 DUF3450: Protein of u 57.0 54 0.0012 30.5 7.7 74 152-225 45-118 (251)
147 KOG2751 Beclin-like protein [S 56.9 1.3E+02 0.0028 32.0 11.0 117 102-243 152-278 (447)
148 PF10146 zf-C4H2: Zinc finger- 56.8 1.9E+02 0.0041 27.8 11.6 66 132-201 23-91 (230)
149 PF09789 DUF2353: Uncharacteri 56.5 1.4E+02 0.003 30.3 10.8 42 20-65 70-111 (319)
150 PF08614 ATG16: Autophagy prot 56.3 19 0.00041 32.5 4.5 65 157-221 110-174 (194)
151 KOG1899 LAR transmembrane tyro 55.7 3.5E+02 0.0076 30.6 15.0 32 169-200 273-304 (861)
152 PF14988 DUF4515: Domain of un 55.5 98 0.0021 29.0 9.1 72 143-214 23-108 (206)
153 PF09726 Macoilin: Transmembra 55.5 3.3E+02 0.0071 30.2 20.2 82 158-240 554-663 (697)
154 COG2433 Uncharacterized conser 55.4 1.8E+02 0.004 32.2 12.2 93 20-124 420-512 (652)
155 PF03961 DUF342: Protein of un 55.4 55 0.0012 33.1 8.0 68 157-224 335-408 (451)
156 PRK13729 conjugal transfer pil 55.1 38 0.00083 35.9 7.0 68 151-227 59-126 (475)
157 PF10473 CENP-F_leu_zip: Leuci 55.0 1.6E+02 0.0035 26.5 11.5 121 93-223 17-137 (140)
158 KOG3096 Spliceosome-associated 55.0 1.4E+02 0.0031 29.0 10.2 85 8-96 89-176 (225)
159 PF08614 ATG16: Autophagy prot 54.6 70 0.0015 28.9 7.8 62 158-219 118-179 (194)
160 PF07352 Phage_Mu_Gam: Bacteri 54.4 53 0.0011 28.6 6.8 64 164-233 4-67 (149)
161 PF14362 DUF4407: Domain of un 54.1 76 0.0017 30.1 8.3 18 186-203 184-201 (301)
162 PRK15422 septal ring assembly 53.9 74 0.0016 26.6 7.1 65 158-222 6-77 (79)
163 PF09787 Golgin_A5: Golgin sub 53.7 2.8E+02 0.0061 28.9 23.2 134 90-223 218-380 (511)
164 COG3879 Uncharacterized protei 52.8 67 0.0015 31.5 7.8 49 19-67 54-102 (247)
165 PRK04863 mukB cell division pr 52.3 5E+02 0.011 31.3 20.2 33 194-226 445-477 (1486)
166 PF12329 TMF_DNA_bd: TATA elem 51.9 97 0.0021 24.7 7.3 62 133-201 3-64 (74)
167 PF04111 APG6: Autophagy prote 51.9 80 0.0017 31.1 8.3 47 160-206 47-93 (314)
168 PF06818 Fez1: Fez1; InterPro 51.6 49 0.0011 31.5 6.6 68 162-229 23-104 (202)
169 PF05266 DUF724: Protein of un 51.5 82 0.0018 29.2 7.9 52 174-225 114-172 (190)
170 PRK06569 F0F1 ATP synthase sub 51.4 1.8E+02 0.0038 26.6 9.8 91 139-229 27-127 (155)
171 PF15290 Syntaphilin: Golgi-lo 51.4 20 0.00044 36.0 4.1 40 187-226 64-103 (305)
172 KOG0614 cGMP-dependent protein 51.0 27 0.00058 38.3 5.2 55 172-226 19-73 (732)
173 KOG4674 Uncharacterized conser 50.8 5.8E+02 0.013 31.7 19.0 123 95-224 124-250 (1822)
174 PF01608 I_LWEQ: I/LWEQ domain 50.6 25 0.00055 31.9 4.3 51 171-226 85-139 (152)
175 PF01920 Prefoldin_2: Prefoldi 49.9 1.2E+02 0.0027 23.7 8.8 40 188-227 59-98 (106)
176 PF05622 HOOK: HOOK protein; 49.8 5.4 0.00012 42.5 0.0 81 137-225 324-404 (713)
177 PF08581 Tup_N: Tup N-terminal 49.5 1.2E+02 0.0026 24.9 7.6 34 190-223 38-75 (79)
178 PF12252 SidE: Dot/Icm substra 49.3 4.3E+02 0.0094 31.6 14.2 49 188-239 1041-1094(1439)
179 PF04977 DivIC: Septum formati 49.1 23 0.00049 26.6 3.3 14 211-224 37-50 (80)
180 COG3883 Uncharacterized protei 49.1 78 0.0017 31.3 7.6 64 158-221 33-96 (265)
181 PRK06975 bifunctional uroporph 48.3 1.1E+02 0.0024 32.9 9.3 19 142-160 343-361 (656)
182 KOG0946 ER-Golgi vesicle-tethe 48.1 5E+02 0.011 30.1 18.7 26 9-34 648-676 (970)
183 PF07106 TBPIP: Tat binding pr 48.0 1.2E+02 0.0027 26.5 8.1 39 188-226 120-159 (169)
184 TIGR02894 DNA_bind_RsfA transc 47.8 99 0.0021 28.7 7.7 40 184-223 104-143 (161)
185 PRK10869 recombination and rep 47.4 1E+02 0.0022 32.4 8.7 38 167-204 161-198 (553)
186 cd07596 BAR_SNX The Bin/Amphip 47.4 91 0.002 26.8 7.1 26 132-157 104-129 (218)
187 PF06005 DUF904: Protein of un 46.8 43 0.00094 26.8 4.7 49 167-229 8-56 (72)
188 PRK13454 F0F1 ATP synthase sub 46.3 2.2E+02 0.0049 25.6 9.9 61 140-200 49-110 (181)
189 PF13166 AAA_13: AAA domain 45.8 3.8E+02 0.0083 28.1 17.6 53 165-224 419-471 (712)
190 PF04849 HAP1_N: HAP1 N-termin 45.7 3.4E+02 0.0073 27.5 14.0 155 25-185 58-249 (306)
191 PF05615 THOC7: Tho complex su 45.6 1.3E+02 0.0028 25.6 7.7 21 209-229 92-112 (139)
192 PF04912 Dynamitin: Dynamitin 45.6 3.2E+02 0.007 27.3 12.0 64 157-223 323-386 (388)
193 PF12777 MT: Microtubule-bindi 45.1 38 0.00081 33.2 4.9 40 161-200 219-258 (344)
194 COG0419 SbcC ATPase involved i 45.1 4.7E+02 0.01 29.0 19.9 35 192-226 411-445 (908)
195 PF10481 CENP-F_N: Cenp-F N-te 45.0 67 0.0015 32.4 6.6 65 182-250 86-151 (307)
196 PF07111 HCR: Alpha helical co 44.9 5.1E+02 0.011 29.3 21.0 77 127-229 577-656 (739)
197 PF10234 Cluap1: Clusterin-ass 44.5 2E+02 0.0044 28.4 9.7 20 209-228 201-220 (267)
198 KOG0994 Extracellular matrix g 44.1 6.8E+02 0.015 30.5 22.3 62 164-228 1574-1635(1758)
199 KOG3091 Nuclear pore complex, 43.7 1.5E+02 0.0032 32.0 9.1 75 152-234 337-411 (508)
200 PF10805 DUF2730: Protein of u 43.3 1.4E+02 0.003 25.1 7.3 64 161-224 33-98 (106)
201 PF05557 MAD: Mitotic checkpoi 43.3 7.9 0.00017 41.3 0.0 93 130-225 106-198 (722)
202 PRK06231 F0F1 ATP synthase sub 43.2 2E+02 0.0044 26.6 9.1 62 140-201 66-128 (205)
203 PF05911 DUF869: Plant protein 43.0 5.4E+02 0.012 29.1 16.5 178 20-203 514-713 (769)
204 PF02403 Seryl_tRNA_N: Seryl-t 42.9 73 0.0016 25.8 5.5 61 163-223 36-99 (108)
205 PF07798 DUF1640: Protein of u 42.9 80 0.0017 28.2 6.3 112 109-241 53-167 (177)
206 cd09235 V_Alix Middle V-domain 42.8 2.3E+02 0.0051 27.8 9.9 29 20-48 189-217 (339)
207 COG4942 Membrane-bound metallo 42.7 1.4E+02 0.0031 31.3 8.8 77 147-225 31-107 (420)
208 PRK03947 prefoldin subunit alp 42.6 2.1E+02 0.0046 24.3 8.8 38 188-225 91-128 (140)
209 PRK09174 F0F1 ATP synthase sub 42.5 2.9E+02 0.0062 25.7 10.0 44 139-182 70-113 (204)
210 PF10234 Cluap1: Clusterin-ass 42.2 78 0.0017 31.2 6.5 75 150-224 163-237 (267)
211 PRK10722 hypothetical protein; 42.1 1.1E+02 0.0023 30.2 7.4 60 20-79 146-209 (247)
212 PF09798 LCD1: DNA damage chec 41.9 84 0.0018 34.6 7.3 41 182-222 6-50 (654)
213 KOG0517 Beta-spectrin [Cytoske 41.7 8.6E+02 0.019 31.0 15.9 201 28-236 768-1029(2473)
214 TIGR02338 gimC_beta prefoldin, 41.2 2.1E+02 0.0045 23.8 8.1 41 187-227 63-103 (110)
215 cd07596 BAR_SNX The Bin/Amphip 41.2 2.1E+02 0.0045 24.7 8.4 77 161-237 115-195 (218)
216 PF10018 Med4: Vitamin-D-recep 41.0 83 0.0018 28.4 6.1 73 173-248 25-99 (188)
217 PRK08475 F0F1 ATP synthase sub 40.4 2.7E+02 0.0058 24.8 10.0 62 140-201 40-102 (167)
218 cd07663 BAR_SNX5 The Bin/Amphi 40.2 3.4E+02 0.0075 26.0 18.7 88 133-224 121-217 (218)
219 KOG4398 Predicted coiled-coil 40.2 55 0.0012 33.3 5.2 78 149-241 20-97 (359)
220 TIGR00634 recN DNA repair prot 40.1 4.6E+02 0.01 27.5 21.5 71 11-84 162-236 (563)
221 PF07334 IFP_35_N: Interferon- 40.0 47 0.001 27.4 4.0 19 209-227 11-29 (76)
222 PF04102 SlyX: SlyX; InterPro 39.9 1.2E+02 0.0025 23.7 6.0 42 178-226 5-46 (69)
223 TIGR03545 conserved hypothetic 39.6 1.3E+02 0.0029 32.1 8.2 17 129-145 165-181 (555)
224 TIGR02338 gimC_beta prefoldin, 39.5 2.2E+02 0.0048 23.6 10.1 100 20-158 8-108 (110)
225 PF15397 DUF4618: Domain of un 39.4 2.7E+02 0.0059 27.5 9.7 92 133-227 40-135 (258)
226 PF05010 TACC: Transforming ac 39.3 3.4E+02 0.0074 25.8 17.9 58 147-214 127-184 (207)
227 COG5185 HEC1 Protein involved 39.3 5.6E+02 0.012 28.2 17.2 81 27-125 279-362 (622)
228 PRK10869 recombination and rep 39.2 4.9E+02 0.011 27.5 18.9 72 12-86 159-234 (553)
229 KOG0239 Kinesin (KAR3 subfamil 38.9 1.5E+02 0.0033 32.4 8.7 37 190-226 240-276 (670)
230 PF03962 Mnd1: Mnd1 family; I 38.8 1.4E+02 0.003 27.5 7.2 24 160-183 73-96 (188)
231 PF07058 Myosin_HC-like: Myosi 38.8 1.6E+02 0.0035 30.3 8.2 58 23-80 60-141 (351)
232 TIGR01554 major_cap_HK97 phage 38.6 92 0.002 30.5 6.4 20 164-183 28-47 (378)
233 PF12240 Angiomotin_C: Angiomo 38.6 2.7E+02 0.0058 26.9 9.3 40 21-60 5-44 (205)
234 PF11221 Med21: Subunit 21 of 38.6 1.5E+02 0.0033 25.9 7.2 106 107-223 13-136 (144)
235 PRK10636 putative ABC transpor 38.5 1.4E+02 0.0031 31.6 8.3 66 159-224 559-631 (638)
236 PF04880 NUDE_C: NUDE protein, 38.5 47 0.001 30.6 4.1 14 166-179 10-23 (166)
237 KOG0992 Uncharacterized conser 38.4 5.8E+02 0.013 28.1 17.6 36 30-66 232-268 (613)
238 cd07664 BAR_SNX2 The Bin/Amphi 38.4 3.6E+02 0.0078 25.7 13.0 23 133-155 121-143 (234)
239 PF09325 Vps5: Vps5 C terminal 38.4 2.9E+02 0.0063 24.6 17.6 26 132-157 122-147 (236)
240 TIGR03007 pepcterm_ChnLen poly 38.4 4.3E+02 0.0093 26.6 17.1 29 96-124 207-235 (498)
241 PF05622 HOOK: HOOK protein; 38.3 11 0.00023 40.4 0.0 99 107-229 554-653 (713)
242 PRK14139 heat shock protein Gr 38.2 38 0.00082 31.5 3.6 31 171-201 33-63 (185)
243 PRK00846 hypothetical protein; 38.1 1.1E+02 0.0024 25.1 5.8 55 174-228 10-64 (77)
244 PRK15422 septal ring assembly 37.6 68 0.0015 26.8 4.6 33 190-229 17-49 (79)
245 PF13514 AAA_27: AAA domain 37.1 6.8E+02 0.015 28.5 22.0 23 227-249 973-995 (1111)
246 PF13870 DUF4201: Domain of un 36.9 3E+02 0.0065 24.3 9.7 103 130-234 32-141 (177)
247 cd07593 BAR_MUG137_fungi The B 36.7 3.7E+02 0.0081 25.4 11.0 101 15-122 97-204 (215)
248 KOG0804 Cytoplasmic Zn-finger 36.4 5.2E+02 0.011 28.0 11.7 43 109-155 384-427 (493)
249 PF00769 ERM: Ezrin/radixin/mo 36.1 1.2E+02 0.0026 28.9 6.6 63 157-226 51-117 (246)
250 PF15619 Lebercilin: Ciliary p 36.0 3.6E+02 0.0079 25.1 16.5 44 23-67 20-63 (194)
251 TIGR02231 conserved hypothetic 35.6 1.7E+02 0.0037 30.1 8.1 49 181-229 128-176 (525)
252 PF11945 WASH_WAHD: WAHD domai 35.5 1.1E+02 0.0024 30.3 6.5 59 169-230 17-75 (297)
253 PF09730 BicD: Microtubule-ass 35.3 1.7E+02 0.0036 32.7 8.4 54 146-199 24-77 (717)
254 PF13863 DUF4200: Domain of un 35.1 2.5E+02 0.0055 23.0 9.0 28 202-229 71-98 (126)
255 KOG2398 Predicted proline-seri 35.0 2E+02 0.0043 31.4 8.7 82 143-228 100-187 (611)
256 PF07200 Mod_r: Modifier of ru 34.9 1.8E+02 0.0038 24.9 6.9 60 165-224 29-88 (150)
257 COG3879 Uncharacterized protei 34.4 1.1E+02 0.0023 30.2 6.1 63 174-241 54-116 (247)
258 PF12711 Kinesin-relat_1: Kine 34.1 51 0.0011 27.6 3.3 12 190-201 2-13 (86)
259 PRK10698 phage shock protein P 33.5 4.1E+02 0.0089 24.9 15.0 35 193-227 168-216 (222)
260 PF14197 Cep57_CLD_2: Centroso 33.4 1.8E+02 0.0039 23.1 6.2 54 165-225 14-67 (69)
261 PRK09039 hypothetical protein; 33.3 5E+02 0.011 25.9 16.3 32 170-201 151-182 (343)
262 TIGR02680 conserved hypothetic 33.2 8.8E+02 0.019 28.7 21.1 37 9-45 732-772 (1353)
263 PRK04406 hypothetical protein; 33.1 1.8E+02 0.0038 23.5 6.2 43 175-224 9-51 (75)
264 PRK12704 phosphodiesterase; Pr 33.1 3.2E+02 0.007 28.9 9.7 86 143-228 51-140 (520)
265 PRK14471 F0F1 ATP synthase sub 33.1 3.3E+02 0.0071 23.7 9.9 63 139-201 25-88 (164)
266 PF06785 UPF0242: Uncharacteri 32.7 6.1E+02 0.013 26.7 13.2 15 110-124 144-158 (401)
267 PF12777 MT: Microtubule-bindi 32.5 1E+02 0.0023 30.2 5.8 21 204-224 290-310 (344)
268 PRK14158 heat shock protein Gr 32.4 58 0.0013 30.5 3.8 10 191-200 61-70 (194)
269 PF15272 BBP1_C: Spindle pole 32.4 4.2E+02 0.0092 25.3 9.5 29 182-210 98-126 (196)
270 PF00769 ERM: Ezrin/radixin/mo 32.1 3E+02 0.0065 26.2 8.5 38 167-204 79-116 (246)
271 PF08172 CASP_C: CASP C termin 32.0 63 0.0014 31.1 4.1 33 195-227 3-35 (248)
272 PF03938 OmpH: Outer membrane 31.8 2.1E+02 0.0045 24.3 6.8 18 218-237 119-136 (158)
273 PF03245 Phage_lysis: Bacterio 31.7 2.6E+02 0.0056 24.2 7.4 38 209-252 46-83 (125)
274 COG4372 Uncharacterized protei 31.7 6.4E+02 0.014 27.1 11.4 130 95-224 62-222 (499)
275 PRK13428 F0F1 ATP synthase sub 31.6 4.1E+02 0.0088 27.4 10.0 61 139-199 18-79 (445)
276 PF08172 CASP_C: CASP C termin 31.5 51 0.0011 31.7 3.4 33 194-226 89-121 (248)
277 PF07227 DUF1423: Protein of u 31.5 4.6E+02 0.0099 28.0 10.4 85 88-201 359-443 (446)
278 KOG3119 Basic region leucine z 31.2 1.3E+02 0.0029 29.0 6.2 62 151-229 192-253 (269)
279 PF05752 Calici_MSP: Calicivir 31.0 1.4E+02 0.003 28.0 5.9 60 27-97 27-86 (167)
280 PF10211 Ax_dynein_light: Axon 30.3 2.7E+02 0.0058 25.6 7.6 64 153-223 124-188 (189)
281 KOG4360 Uncharacterized coiled 30.2 7.9E+02 0.017 27.2 13.1 204 20-227 67-304 (596)
282 PF12998 ING: Inhibitor of gro 30.2 2.7E+02 0.0059 21.9 8.0 70 143-222 31-103 (105)
283 PRK14162 heat shock protein Gr 30.0 63 0.0014 30.3 3.6 28 174-201 43-70 (194)
284 PF07798 DUF1640: Protein of u 29.8 3.9E+02 0.0084 23.9 8.4 19 183-201 130-148 (177)
285 PF02403 Seryl_tRNA_N: Seryl-t 29.6 3E+02 0.0066 22.2 7.3 62 165-226 31-95 (108)
286 PRK05724 acetyl-CoA carboxylas 29.3 74 0.0016 32.0 4.2 25 210-234 33-57 (319)
287 PF08826 DMPK_coil: DMPK coile 29.3 1.6E+02 0.0035 23.2 5.2 30 197-226 31-60 (61)
288 PRK14473 F0F1 ATP synthase sub 29.3 3.8E+02 0.0083 23.3 10.0 60 140-199 26-86 (164)
289 PRK14474 F0F1 ATP synthase sub 29.2 5.1E+02 0.011 24.7 10.0 61 140-200 23-84 (250)
290 PRK14146 heat shock protein Gr 29.2 80 0.0017 30.0 4.2 37 190-226 53-89 (215)
291 TIGR01000 bacteriocin_acc bact 29.1 6.2E+02 0.013 25.6 13.3 45 135-179 144-188 (457)
292 COG1842 PspA Phage shock prote 29.1 2.5E+02 0.0053 26.8 7.4 56 162-224 84-139 (225)
293 TIGR03319 YmdA_YtgF conserved 29.0 4.1E+02 0.0089 28.1 9.7 12 289-300 219-230 (514)
294 COG4026 Uncharacterized protei 28.9 3.1E+02 0.0067 27.4 8.2 50 174-223 153-202 (290)
295 PF05529 Bap31: B-cell recepto 28.8 1.9E+02 0.0041 25.8 6.3 18 209-226 165-182 (192)
296 PF13094 CENP-Q: CENP-Q, a CEN 28.7 2.8E+02 0.0061 24.2 7.2 36 151-186 19-57 (160)
297 PF07445 priB_priC: Primosomal 28.7 3.8E+02 0.0083 24.3 8.3 55 11-69 112-167 (173)
298 CHL00198 accA acetyl-CoA carbo 28.6 71 0.0015 32.2 3.9 15 324-338 153-167 (322)
299 KOG2129 Uncharacterized conser 28.4 3.4E+02 0.0073 29.3 8.8 64 174-240 162-233 (552)
300 PHA03247 large tegument protei 28.1 2E+02 0.0044 36.9 8.0 72 20-95 1286-1359(3151)
301 KOG0612 Rho-associated, coiled 28.0 1.2E+03 0.025 28.4 20.1 64 165-229 625-691 (1317)
302 PF00804 Syntaxin: Syntaxin; 27.9 2.2E+02 0.0049 21.6 5.8 60 164-227 8-71 (103)
303 PF03399 SAC3_GANP: SAC3/GANP/ 27.9 1.7E+02 0.0036 25.5 5.7 18 139-156 30-47 (204)
304 PRK04325 hypothetical protein; 27.6 2.2E+02 0.0047 22.7 5.8 40 178-224 10-49 (74)
305 KOG4403 Cell surface glycoprot 27.6 5.5E+02 0.012 27.9 10.2 122 20-148 264-424 (575)
306 PF12562 DUF3746: Protein of u 27.6 25 0.00054 25.7 0.4 12 340-351 1-12 (37)
307 PHA03187 UL14 tegument protein 27.5 2.5E+02 0.0055 28.6 7.5 42 24-65 74-115 (322)
308 PLN02939 transferase, transfer 27.2 9.5E+02 0.021 28.1 12.6 131 24-189 252-402 (977)
309 KOG0612 Rho-associated, coiled 27.2 1.2E+03 0.026 28.3 19.2 26 150-175 668-693 (1317)
310 KOG3990 Uncharacterized conser 27.0 1.2E+02 0.0025 30.6 5.0 62 110-183 228-294 (305)
311 PRK14163 heat shock protein Gr 27.0 68 0.0015 30.7 3.3 28 174-201 44-71 (214)
312 PRK13729 conjugal transfer pil 26.9 1.3E+02 0.0029 32.0 5.7 38 190-227 82-119 (475)
313 PF10046 BLOC1_2: Biogenesis o 26.8 2.6E+02 0.0057 23.0 6.4 44 158-201 54-97 (99)
314 TIGR03752 conj_TIGR03752 integ 26.5 3.1E+02 0.0068 29.4 8.3 53 172-224 82-135 (472)
315 PF09304 Cortex-I_coil: Cortex 26.5 4.5E+02 0.0097 23.1 8.9 72 134-209 5-76 (107)
316 PF10481 CENP-F_N: Cenp-F N-te 26.5 1.5E+02 0.0033 30.0 5.7 61 167-227 15-75 (307)
317 PF14915 CCDC144C: CCDC144C pr 26.5 5.7E+02 0.012 26.1 9.7 93 131-228 6-100 (305)
318 TIGR03156 GTP_HflX GTP-binding 26.3 57 0.0012 32.2 2.8 104 126-229 51-178 (351)
319 PF08700 Vps51: Vps51/Vps67; 26.3 2E+02 0.0043 22.1 5.3 43 182-224 42-84 (87)
320 PF10168 Nup88: Nuclear pore c 26.2 7.1E+02 0.015 27.7 11.2 9 20-28 544-552 (717)
321 PF06103 DUF948: Bacterial pro 26.0 2.9E+02 0.0064 21.8 6.3 53 153-205 30-82 (90)
322 PF14772 NYD-SP28: Sperm tail 25.9 3.5E+02 0.0075 22.1 6.9 34 13-46 41-82 (104)
323 PRK00409 recombination and DNA 25.7 3.3E+02 0.0072 30.2 8.6 17 184-200 559-575 (782)
324 PRK14143 heat shock protein Gr 25.5 88 0.0019 30.1 3.8 27 175-201 72-98 (238)
325 COG3074 Uncharacterized protei 25.3 3.5E+02 0.0075 22.7 6.6 62 159-220 7-75 (79)
326 PHA03332 membrane glycoprotein 25.1 2.8E+02 0.0061 32.9 8.1 57 163-222 891-947 (1328)
327 PF14197 Cep57_CLD_2: Centroso 25.1 3E+02 0.0065 21.9 6.2 53 174-226 9-61 (69)
328 PF04102 SlyX: SlyX; InterPro 25.1 1.3E+02 0.0027 23.5 4.0 31 171-201 12-42 (69)
329 cd07674 F-BAR_FCHO1 The F-BAR 25.0 5.9E+02 0.013 24.1 15.2 25 136-160 180-204 (261)
330 PHA03188 UL14 tegument protein 24.8 3.3E+02 0.0072 26.2 7.3 75 24-106 78-158 (199)
331 TIGR02977 phageshock_pspA phag 24.6 5.6E+02 0.012 23.6 9.3 40 190-229 98-137 (219)
332 PRK10698 phage shock protein P 24.5 5.2E+02 0.011 24.3 8.6 40 190-229 98-137 (222)
333 smart00307 ILWEQ I/LWEQ domain 24.0 2.2E+02 0.0047 27.1 6.0 26 197-227 163-188 (200)
334 PRK14148 heat shock protein Gr 23.8 1E+02 0.0022 28.9 3.8 10 191-200 61-70 (195)
335 KOG0993 Rab5 GTPase effector R 23.6 3.7E+02 0.0081 28.9 8.1 32 163-201 141-172 (542)
336 PF06120 Phage_HK97_TLTM: Tail 23.6 2.6E+02 0.0057 28.1 6.8 61 164-224 42-107 (301)
337 TIGR01730 RND_mfp RND family e 23.4 5.7E+02 0.012 23.3 9.5 31 190-227 101-131 (322)
338 KOG4552 Vitamin-D-receptor int 23.3 2.4E+02 0.0052 27.9 6.3 54 152-205 46-102 (272)
339 PF00170 bZIP_1: bZIP transcri 23.3 3.2E+02 0.007 20.4 6.1 12 209-220 51-62 (64)
340 PTZ00419 valyl-tRNA synthetase 23.3 3E+02 0.0064 31.1 7.8 58 161-225 927-991 (995)
341 PRK14145 heat shock protein Gr 23.1 1.1E+02 0.0024 28.8 4.0 28 173-200 48-75 (196)
342 PRK00295 hypothetical protein; 23.0 1.4E+02 0.003 23.5 3.9 28 190-224 18-45 (68)
343 TIGR00513 accA acetyl-CoA carb 22.9 1.2E+02 0.0026 30.5 4.4 25 314-338 137-164 (316)
344 PHA03190 UL14 tegument protein 22.8 5.2E+02 0.011 24.9 8.2 42 24-65 74-115 (196)
345 PRK10093 primosomal replicatio 22.8 3.2E+02 0.007 25.5 6.8 55 12-70 110-166 (171)
346 KOG0018 Structural maintenance 22.8 1.4E+03 0.029 27.4 15.8 26 100-125 310-335 (1141)
347 cd07665 BAR_SNX1 The Bin/Amphi 22.7 6.9E+02 0.015 24.0 13.5 23 133-155 121-143 (234)
348 PRK09841 cryptic autophosphory 22.7 9.3E+02 0.02 26.2 11.1 79 152-234 328-406 (726)
349 PF13747 DUF4164: Domain of un 22.7 4.2E+02 0.0091 21.8 6.8 26 193-218 34-59 (89)
350 TIGR03752 conj_TIGR03752 integ 22.6 5.1E+02 0.011 27.8 8.9 43 186-235 111-155 (472)
351 TIGR03321 alt_F1F0_F0_B altern 22.6 6.4E+02 0.014 23.6 10.0 60 140-199 23-83 (246)
352 PF06476 DUF1090: Protein of u 22.5 2.6E+02 0.0057 24.1 5.8 44 157-202 64-107 (115)
353 PF13874 Nup54: Nucleoporin co 22.4 5E+02 0.011 22.6 7.6 81 153-241 34-118 (141)
354 COG5374 Uncharacterized conser 22.2 1.8E+02 0.0039 27.8 5.1 26 158-183 138-163 (192)
355 COG2919 Septum formation initi 22.1 2E+02 0.0043 24.4 5.0 28 24-51 59-86 (117)
356 CHL00118 atpG ATP synthase CF0 22.0 5.3E+02 0.012 22.5 10.0 60 140-199 40-100 (156)
357 PRK14144 heat shock protein Gr 21.9 1E+02 0.0023 29.1 3.5 6 144-149 9-14 (199)
358 PRK14151 heat shock protein Gr 21.7 93 0.002 28.6 3.1 28 174-201 24-51 (176)
359 PF07412 Geminin: Geminin; In 21.7 1.4E+02 0.0031 28.5 4.4 32 170-201 118-149 (200)
360 PF05837 CENP-H: Centromere pr 21.7 4.8E+02 0.011 21.8 8.1 61 166-227 13-73 (106)
361 PRK11546 zraP zinc resistance 21.6 2.7E+02 0.0059 25.3 5.9 18 212-229 96-113 (143)
362 PF05757 PsbQ: Oxygen evolving 21.5 2.2E+02 0.0048 27.0 5.6 46 149-194 137-183 (202)
363 PHA03185 UL14 tegument protein 21.5 5.4E+02 0.012 25.1 8.1 41 25-65 75-115 (214)
364 PF08826 DMPK_coil: DMPK coile 21.5 3.7E+02 0.0081 21.2 5.9 35 191-225 18-52 (61)
365 PF09325 Vps5: Vps5 C terminal 21.5 5.8E+02 0.013 22.7 14.6 52 161-212 133-184 (236)
366 PF07464 ApoLp-III: Apolipopho 21.5 2.8E+02 0.0062 25.2 6.0 90 96-195 27-117 (155)
367 PRK00295 hypothetical protein; 21.4 3.5E+02 0.0075 21.3 5.8 11 190-200 32-42 (68)
368 PF12240 Angiomotin_C: Angiomo 21.3 2.2E+02 0.0048 27.4 5.5 42 170-228 3-44 (205)
369 PHA03246 large tegument protei 21.0 3.4E+02 0.0073 35.0 8.0 62 20-82 1361-1424(3095)
370 PRK14147 heat shock protein Gr 21.0 88 0.0019 28.6 2.8 41 180-230 28-68 (172)
371 PF10376 Mei5: Double-strand r 20.9 2.5E+02 0.0055 26.8 5.9 43 181-223 142-192 (221)
372 PF06160 EzrA: Septation ring 20.5 1E+03 0.022 25.2 19.9 174 28-226 251-428 (560)
373 PRK14154 heat shock protein Gr 20.3 1.1E+02 0.0024 29.2 3.3 30 172-201 54-83 (208)
374 PF08657 DASH_Spc34: DASH comp 20.3 2.9E+02 0.0064 26.9 6.3 56 132-203 158-213 (259)
375 PF07926 TPR_MLP1_2: TPR/MLP1/ 20.2 5.5E+02 0.012 21.9 10.2 93 131-227 3-95 (132)
376 PRK14140 heat shock protein Gr 20.2 1.6E+02 0.0035 27.6 4.3 29 172-200 39-67 (191)
377 PF13971 Mei4: Meiosis-specifi 20.2 1.2E+02 0.0026 31.4 3.8 32 39-70 44-75 (375)
378 PRK02119 hypothetical protein; 20.1 4.3E+02 0.0094 21.1 6.2 29 190-225 22-50 (73)
379 KOG1962 B-cell receptor-associ 20.1 3.4E+02 0.0073 26.3 6.5 40 162-201 164-203 (216)
No 1
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=97.16 E-value=0.0086 Score=67.31 Aligned_cols=224 Identities=19% Similarity=0.248 Sum_probs=118.5
Q ss_pred HHHHHHHhhhchhHHHHHHHHHHHHhcCCCC-CCcchhhHHhhhhhhhhhhhhhHhhhhhHHHhhhhhHHHHHHHHHHHH
Q 018386 95 ASLLKLMLEYTDDQLADFMAWFDLLRQKPKD-GEPKSIEVSAFLDERAFLWNQYKVMENDLTSKINSKRAEVDRANERIE 173 (357)
Q Consensus 95 ~~l~k~~lE~teDeL~DFka~~~~L~~~lke-~SeKdkEVsALlaEKdFVWNQ~k~ME~Dyt~lLK~K~~EvaQAtE~iq 173 (357)
+.-|..+++-.+-+|.+-+..+..=+..+.+ -.+..+|..-++...+-+=.+.++-|+++-.+++..+....+- .
T Consensus 449 i~~L~~~~~~~~~~l~e~~~~l~~~t~~~~~e~~~~ekel~~~~~~~n~~~~e~~vaesel~~L~~~~~~~~~~~----e 524 (1293)
T KOG0996|consen 449 IEQLEELLEKEERELDEILDSLKQETEGIREEIEKLEKELMPLLKQVNEARSELDVAESELDILLSRHETGLKKV----E 524 (1293)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----H
Confidence 3333333333333444444333332222222 2356677888888999999999999999998887765555544 4
Q ss_pred HHHHHHHHHhhhhhhhhhHHHHHHHHHHhhhhcccchhhHHHHHHHHHHHHHhhcCCCCccccccccccccccccCCCCc
Q 018386 174 KLLASTEQLQLSNNEKDETIAKLKTQIAQMETGSKKWNTEISRLTQELELLRKSRTASDTPVLNRCTRIAGATTSNAGDS 253 (357)
Q Consensus 174 KL~q~~EeLQ~~nqeKDdeI~RLqak~aeMe~~~Kkk~eeIs~L~~eLe~lrk~r~a~~tpvl~~ct~~~~~~~~~~~~~ 253 (357)
.|...++.++....++-++|..++.++..|....+++-.++.+|..+..+|++--.+ .-+++.-.+.+.+-.+
T Consensus 525 ~lk~~L~~~~~~~~e~~~~l~~~k~~l~~~k~e~~~~~k~l~~~~~e~~~~~~~~~~-------~rqrveE~ks~~~~~~ 597 (1293)
T KOG0996|consen 525 ELKGKLLASSESLKEKKTELDDLKEELPSLKQELKEKEKELPKLRKEERNLKSQLNK-------LRQRVEEAKSSLSSSR 597 (1293)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHhhh
Confidence 455555566666778888888888887733333333333333333333322221111 1111111111111111
Q ss_pred ccc-----------cccccccccccccCCCCCccCCCCCccccccccCCCCCCcceeccccCCC---------------C
Q 018386 254 VQN-----------RSSTAGIKGRLRKSGSSSVTPLSNYSTTTAQSLGGKNGDNVVVNKQMPAA---------------Q 307 (357)
Q Consensus 254 ~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~k~~~~~---------------~ 307 (357)
-+| -.-..||.|||-.-|+-.. -|. +|-|.+|.--++|||-..-+|. -
T Consensus 598 s~~kVl~al~r~kesG~i~Gf~GRLGDLg~Id~----kYD--vAIsTac~~LdyiVVdt~e~aq~cI~fl~~~nLgraTF 671 (1293)
T KOG0996|consen 598 SRNKVLDALMRLKESGRIPGFYGRLGDLGAIDE----KYD--VAISTACARLDYIVVDTIETAQECINFLKKNNLGRATF 671 (1293)
T ss_pred hhhHHHHHHHHHHHcCCCCccccccccccccch----HHH--HHHHHhccccceEEeccHHHHHHHHHHHHHcCCCceeE
Confidence 000 0114688999988776432 222 2333344444677776654442 1
Q ss_pred CCccccccccccccccccccccccccCcccccc
Q 018386 308 VPLHVDSEKGTRSSKRKAVDVIPILDTPKLFSS 340 (357)
Q Consensus 308 ~~~~~~~~k~~r~~k~k~~~~~~~~e~pklfss 340 (357)
+++ + ..+--.++.+++.|-..+|+||.=
T Consensus 672 i~L----D-ki~~~~~~l~~i~tpenvPRLfDL 699 (1293)
T KOG0996|consen 672 IIL----D-KIKDHQKKLAPITTPENVPRLFDL 699 (1293)
T ss_pred Eeh----H-hhhhhhhccCCCCCCCCcchHhhh
Confidence 222 1 122235667888888999999973
No 2
>PRK11637 AmiB activator; Provisional
Probab=96.93 E-value=0.21 Score=49.41 Aligned_cols=82 Identities=15% Similarity=0.284 Sum_probs=48.1
Q ss_pred hhhhHhhhhhHHHhhhhhHHHHHHHHHHHHH-----------HHHHHHHHhhhhhhhhhHHHHHHHHHHhhhhcccchhh
Q 018386 144 WNQYKVMENDLTSKINSKRAEVDRANERIEK-----------LLASTEQLQLSNNEKDETIAKLKTQIAQMETGSKKWNT 212 (357)
Q Consensus 144 WNQ~k~ME~Dyt~lLK~K~~EvaQAtE~iqK-----------L~q~~EeLQ~~nqeKDdeI~RLqak~aeMe~~~Kkk~e 212 (357)
-++|...-.+|..-++....+++.+...++. +.+...+|+..-.++...+..|+.+..+.+....+...
T Consensus 161 l~~i~~~d~~~l~~l~~~~~~L~~~k~~le~~~~~l~~~~~e~~~~k~~L~~~k~e~~~~l~~L~~~~~~~~~~l~~l~~ 240 (428)
T PRK11637 161 FGYLNQARQETIAELKQTREELAAQKAELEEKQSQQKTLLYEQQAQQQKLEQARNERKKTLTGLESSLQKDQQQLSELRA 240 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3566666666666666655555544444332 33333344555556666788887776666666666666
Q ss_pred HHHHHHHHHHHHH
Q 018386 213 EISRLTQELELLR 225 (357)
Q Consensus 213 eIs~L~~eLe~lr 225 (357)
+.++|...|+.+.
T Consensus 241 ~~~~L~~~I~~l~ 253 (428)
T PRK11637 241 NESRLRDSIARAE 253 (428)
T ss_pred HHHHHHHHHHHHH
Confidence 6666666666553
No 3
>PHA02562 46 endonuclease subunit; Provisional
Probab=96.89 E-value=0.55 Score=46.85 Aligned_cols=116 Identities=12% Similarity=0.180 Sum_probs=55.7
Q ss_pred hHHHHHHHHHHHHhc--CCCC-----CCcchhhHHhhhhhhhhhhhhhHhhhhhHHHhhhhhHHHHHHHHHHHHHHHHHH
Q 018386 107 DQLADFMAWFDLLRQ--KPKD-----GEPKSIEVSAFLDERAFLWNQYKVMENDLTSKINSKRAEVDRANERIEKLLAST 179 (357)
Q Consensus 107 DeL~DFka~~~~L~~--~lke-----~SeKdkEVsALlaEKdFVWNQ~k~ME~Dyt~lLK~K~~EvaQAtE~iqKL~q~~ 179 (357)
.++..|...+.++.. .|.. .+. ..++..|-...+..=.|++.++..... +.....+.+++...+..+.+.+
T Consensus 269 ~~l~~~~~~~~~~~~~~~Cp~C~~~~~~~-~~~~~~l~d~i~~l~~~l~~l~~~i~~-~~~~~~~~~~~~~~i~el~~~i 346 (562)
T PHA02562 269 SKIEQFQKVIKMYEKGGVCPTCTQQISEG-PDRITKIKDKLKELQHSLEKLDTAIDE-LEEIMDEFNEQSKKLLELKNKI 346 (562)
T ss_pred HHHHHHHHHHHHhcCCCCCCCCCCcCCCc-HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHH
Confidence 455666666666643 1111 112 556666666666666666666655552 2222223444444444444444
Q ss_pred HHHhhhhhhhhhHHHHHHHHHHhhhhcccchhhHHHHHHHHHHHH
Q 018386 180 EQLQLSNNEKDETIAKLKTQIAQMETGSKKWNTEISRLTQELELL 224 (357)
Q Consensus 180 EeLQ~~nqeKDdeI~RLqak~aeMe~~~Kkk~eeIs~L~~eLe~l 224 (357)
......-...-.++..|+.++.+++....+..+++..|..+|..+
T Consensus 347 ~~~~~~i~~~~~~~~~l~~ei~~l~~~~~~~~~~l~~l~~~l~~~ 391 (562)
T PHA02562 347 STNKQSLITLVDKAKKVKAAIEELQAEFVDNAEELAKLQDELDKI 391 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHHHHHHHHHH
Confidence 444433333444444445555555444444444444444444433
No 4
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=96.77 E-value=0.2 Score=46.69 Aligned_cols=193 Identities=20% Similarity=0.314 Sum_probs=94.7
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhhhh----hhhhHHHHHHhHHhHHHHH-------------------HHHHHHHHhhhh
Q 018386 29 EQIETLVKEREILEDHLKMQHEKWVS----DVRLYEDHISQMKSEIVAQ-------------------ELIHLLDAAKSD 85 (357)
Q Consensus 29 ~QvEsL~~ER~~LEa~ik~QhE~W~s----dv~~lqdrLsqm~~el~~e-------------------E~~~~~EaAk~~ 85 (357)
..|..|=.+...|+..|...++.|-. ....|+..|..++..+..- ++..+|+.....
T Consensus 18 ekVr~LE~~N~~Le~~i~~~~~~~~~~~~~~~~~ye~el~~lr~~id~~~~eka~l~~e~~~l~~e~~~~r~k~e~e~~~ 97 (312)
T PF00038_consen 18 EKVRFLEQENKRLESEIEELREKKGEEVSRIKEMYEEELRELRRQIDDLSKEKARLELEIDNLKEELEDLRRKYEEELAE 97 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhhHHHHHHHHhcccccCcccccchhhHHHHhHHhhhhHHHHhhHHhhhhhhHHHHHHHHHHHHHHHHHH
Confidence 56778888889999999888887644 3445666666665544431 122222211100
Q ss_pred hhhchhhHHHHHHHHHhhhch-------hHHHHHHHHHHHHhcC-------CCC-C---------CcchhhHHhhhhhhh
Q 018386 86 MVVGLKLREASLLKLMLEYTD-------DQLADFMAWFDLLRQK-------PKD-G---------EPKSIEVSAFLDERA 141 (357)
Q Consensus 86 l~LGlK~RE~~l~k~~lE~te-------DeL~DFka~~~~L~~~-------lke-~---------SeKdkEVsALlaEKd 141 (357)
...=+-++..++.-++... ..+..++..+.+|... |.. . .....++++.|++
T Consensus 98 --~~~le~el~~lrk~ld~~~~~r~~le~~i~~L~eEl~fl~~~heeEi~~L~~~~~~~~~~e~~~~~~~dL~~~L~e-- 173 (312)
T PF00038_consen 98 --RKDLEEELESLRKDLDEETLARVDLENQIQSLKEELEFLKQNHEEEIEELREQIQSSVTVEVDQFRSSDLSAALRE-- 173 (312)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSTT----------------HHHHHHH--
T ss_pred --HHHHHHHHhhhhhhhhhhhhhHhHHHHHHHHHHHHHHHHHhhhhhhhhhhhhccccccceeecccccccchhhhhh--
Confidence 0000111222222222111 1223334444444332 111 0 1223455665554
Q ss_pred hhhhhh--------HhhhhhHHHhhhhhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHH-------HHhh---
Q 018386 142 FLWNQY--------KVMENDLTSKINSKRAEVDRANERIEKLLASTEQLQLSNNEKDETIAKLKTQ-------IAQM--- 203 (357)
Q Consensus 142 FVWNQ~--------k~ME~Dyt~lLK~K~~EvaQAtE~iqKL~q~~EeLQ~~nqeKDdeI~RLqak-------~aeM--- 203 (357)
++.|| ..+|.-|...+......+.++++.+..+...+-.+...-+.-..+|..|+++ +.++
T Consensus 174 -iR~~ye~~~~~~~~e~e~~y~~k~~~l~~~~~~~~~~~~~~~~E~~~~r~~~~~l~~el~~l~~~~~~Le~~l~~le~~ 252 (312)
T PF00038_consen 174 -IRAQYEEIAQKNREELEEWYQSKLEELRQQSEKSSEELESAKEELKELRRQIQSLQAELESLRAKNASLERQLRELEQR 252 (312)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -HHHHHHHHHhhhhhhhhhhcccccccccccccccccccchhHhHHHHHHhhhhHhhhhhhccccchhhhhhhHHHHHHH
Confidence 34444 2688889888888777777777777666666666655555555555555444 3222
Q ss_pred -hhcccchhhHHHHHHHHHHHHHh
Q 018386 204 -ETGSKKWNTEISRLTQELELLRK 226 (357)
Q Consensus 204 -e~~~Kkk~eeIs~L~~eLe~lrk 226 (357)
..........|..|+.+|..||.
T Consensus 253 ~~~~~~~~~~~i~~le~el~~l~~ 276 (312)
T PF00038_consen 253 LDEEREEYQAEIAELEEELAELRE 276 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhccchhHHHHHH
Confidence 33445566777777777777764
No 5
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=96.68 E-value=0.15 Score=55.56 Aligned_cols=200 Identities=20% Similarity=0.277 Sum_probs=119.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH---HhhhhhhhhhhhhHHHHHHhHHhHHHHHH-----HHHHHH-----------H
Q 018386 21 VKMLKSQQEQIETLVKEREILEDHL---KMQHEKWVSDVRLYEDHISQMKSEIVAQE-----LIHLLD-----------A 81 (357)
Q Consensus 21 VkMLr~~q~QvEsL~~ER~~LEa~i---k~QhE~W~sdv~~lqdrLsqm~~el~~eE-----~~~~~E-----------a 81 (357)
-.+|-++++|++.+-.|+.++..+| +-.|+.--..+.+++++|.-....+..++ ...++- .
T Consensus 356 ~~~l~kk~~~~~~~qeE~~~~~~Ei~~l~d~~d~~e~ki~~Lq~kie~Lee~l~ekd~ql~~~k~Rl~~~~d~~~~~~~~ 435 (775)
T PF10174_consen 356 NSQLEKKQAQIEKLQEEKSRLQGEIEDLRDMLDKKERKINVLQKKIENLEEQLREKDRQLDEEKERLSSQADSSNEDEAL 435 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccchHHHH
Confidence 4678899999999999999997777 45555555677888888766665554433 122221 0
Q ss_pred hhhhhhhchhhHHHHHHHHHhhhch----hHH-------HHHHHHHHHHhcCCCCCCcchhhHHhhhhhh-hhhhhhhHh
Q 018386 82 AKSDMVVGLKLREASLLKLMLEYTD----DQL-------ADFMAWFDLLRQKPKDGEPKSIEVSAFLDER-AFLWNQYKV 149 (357)
Q Consensus 82 Ak~~l~LGlK~RE~~l~k~~lE~te----DeL-------~DFka~~~~L~~~lke~SeKdkEVsALlaEK-dFVWNQ~k~ 149 (357)
...+-.++.++|-..-+...-+..+ +++ .++++.+..|..+|.+ +...+..+--+- .+.=||
T Consensus 436 ~~lEea~~eker~~e~l~e~r~~~e~e~~Eele~~~~e~~~lk~~~~~LQ~eLsE---k~~~l~~~kee~s~l~s~~--- 509 (775)
T PF10174_consen 436 ETLEEALREKERLQERLEEQRERAEKERQEELETYQKELKELKAKLESLQKELSE---KELQLEDAKEEASKLASSQ--- 509 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHH---HHHHHHHhhhHHHHHhhcc---
Confidence 2222345566555555443322222 334 4444444444444443 322222111110 111233
Q ss_pred hhhhHHHhhhhhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHhhhhcccchhhHHHHHHHHHHHHHhhcC
Q 018386 150 MENDLTSKINSKRAEVDRANERIEKLLASTEQLQLSNNEKDETIAKLKTQIAQMETGSKKWNTEISRLTQELELLRKSRT 229 (357)
Q Consensus 150 ME~Dyt~lLK~K~~EvaQAtE~iqKL~q~~EeLQ~~nqeKDdeI~RLqak~aeMe~~~Kkk~eeIs~L~~eLe~lrk~r~ 229 (357)
++.++ .|+.=++++.+.++++.+|...++.++..+ +.-+.|..|...++..-..+-+...||.+|-+-|..+=..+.
T Consensus 510 -~K~~s-~i~~l~I~lEk~rek~~kl~~ql~k~~~~~-e~~~r~~~Le~ev~~~~ee~~kaq~EVERLl~~L~~~E~EK~ 586 (775)
T PF10174_consen 510 -EKKDS-EIERLEIELEKKREKHEKLEKQLEKLRANA-ELRDRIQQLEQEVTRYREESEKAQAEVERLLDILREAENEKN 586 (775)
T ss_pred -chhhh-HHHHHHHHHHHhhhHHHHHHHHHHHHHhCH-hhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333 467888889999999999988888765544 556678888887777777777777777777776666655554
No 6
>PHA02562 46 endonuclease subunit; Provisional
Probab=96.44 E-value=0.12 Score=51.59 Aligned_cols=105 Identities=18% Similarity=0.250 Sum_probs=72.9
Q ss_pred hhHHHHHHHHHHHHhcCCCCCCcchhhHHhhhhhhhhhhhhhHhhhhhHHHhhhhhHHHHHHHHHHHHHHHHHHHHHhhh
Q 018386 106 DDQLADFMAWFDLLRQKPKDGEPKSIEVSAFLDERAFLWNQYKVMENDLTSKINSKRAEVDRANERIEKLLASTEQLQLS 185 (357)
Q Consensus 106 eDeL~DFka~~~~L~~~lke~SeKdkEVsALlaEKdFVWNQ~k~ME~Dyt~lLK~K~~EvaQAtE~iqKL~q~~EeLQ~~ 185 (357)
++.+......+..|..++++....-.++.....+ ++++..-=.++...+...+..+......+..|+..++.|+..
T Consensus 298 ~~~~~~l~d~i~~l~~~l~~l~~~i~~~~~~~~~----~~~~~~~i~el~~~i~~~~~~i~~~~~~~~~l~~ei~~l~~~ 373 (562)
T PHA02562 298 PDRITKIKDKLKELQHSLEKLDTAIDELEEIMDE----FNEQSKKLLELKNKISTNKQSLITLVDKAKKVKAAIEELQAE 373 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4555666667777777666655555555554443 333333334455567777777888888999999999999999
Q ss_pred hhhhhhHHHHHHHHHHhhhhcccchhhHH
Q 018386 186 NNEKDETIAKLKTQIAQMETGSKKWNTEI 214 (357)
Q Consensus 186 nqeKDdeI~RLqak~aeMe~~~Kkk~eeI 214 (357)
+.+..+++.+|..++.++.....+...+.
T Consensus 374 ~~~~~~~l~~l~~~l~~~~~~~~~~~ke~ 402 (562)
T PHA02562 374 FVDNAEELAKLQDELDKIVKTKSELVKEK 402 (562)
T ss_pred hhchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999887666655544443
No 7
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=96.39 E-value=0.7 Score=49.26 Aligned_cols=60 Identities=18% Similarity=0.317 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHhhhhcccchhhHHHHHHHHHHHH
Q 018386 165 VDRANERIEKLLASTEQLQLSNNEKDETIAKLKTQIAQMETGSKKWNTEISRLTQELELL 224 (357)
Q Consensus 165 vaQAtE~iqKL~q~~EeLQ~~nqeKDdeI~RLqak~aeMe~~~Kkk~eeIs~L~~eLe~l 224 (357)
..+....++.|.+.++.++....+....+..++.++.+++......+.++..++.+++.+
T Consensus 401 ~~~~~~~~~~l~~~l~~l~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~l~~l~~~~~~~ 460 (1164)
T TIGR02169 401 INELKRELDRLQEELQRLSEELADLNAAIAGIEAKINELEEEKEDKALEIKKQEWKLEQL 460 (1164)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444455555555555555555555555555555555544
No 8
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=96.33 E-value=0.84 Score=49.99 Aligned_cols=95 Identities=20% Similarity=0.237 Sum_probs=64.0
Q ss_pred CcchhhHHhhhhhhhhhhhhhHhhhhhHHHhhhhhHHHHHHHHHHHHHHHHHHHHHhhhhh-------hhhhHH------
Q 018386 127 EPKSIEVSAFLDERAFLWNQYKVMENDLTSKINSKRAEVDRANERIEKLLASTEQLQLSNN-------EKDETI------ 193 (357)
Q Consensus 127 SeKdkEVsALlaEKdFVWNQ~k~ME~Dyt~lLK~K~~EvaQAtE~iqKL~q~~EeLQ~~nq-------eKDdeI------ 193 (357)
+.|+.|+.+|..+-.=.=||+.-| ..+.+.||. ....+...+..|+..++.|..--. +|..-|
T Consensus 297 ~rk~~E~~~~qt~l~~~~~~~~d~-r~hi~~lke---sl~~ke~~~~~Lqsdve~Lr~rle~k~~~l~kk~~~~~~~qeE 372 (775)
T PF10174_consen 297 SRKKSELEALQTRLETLEEQDSDM-RQHIEVLKE---SLRAKEQEAEMLQSDVEALRFRLEEKNSQLEKKQAQIEKLQEE 372 (775)
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHH-HHHHHHHHH---HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 489999999999988888888888 666667753 666666777777777777754433 344333
Q ss_pred -HHHHHHHHhhhhcccchhhHHHHHHHHHHHHH
Q 018386 194 -AKLKTQIAQMETGSKKWNTEISRLTQELELLR 225 (357)
Q Consensus 194 -~RLqak~aeMe~~~Kkk~eeIs~L~~eLe~lr 225 (357)
.+++.++.+|.-....++-+|+.|...+++|.
T Consensus 373 ~~~~~~Ei~~l~d~~d~~e~ki~~Lq~kie~Le 405 (775)
T PF10174_consen 373 KSRLQGEIEDLRDMLDKKERKINVLQKKIENLE 405 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344455555556666667777777765554
No 9
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=96.20 E-value=0.94 Score=48.32 Aligned_cols=54 Identities=20% Similarity=0.283 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHhhhhcccchhhHHHH
Q 018386 163 AEVDRANERIEKLLASTEQLQLSNNEKDETIAKLKTQIAQMETGSKKWNTEISR 216 (357)
Q Consensus 163 ~EvaQAtE~iqKL~q~~EeLQ~~nqeKDdeI~RLqak~aeMe~~~Kkk~eeIs~ 216 (357)
.+....+..++.+.+.+++|+....+...+|..++.++.+.+....+...++..
T Consensus 420 ~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~l~~ 473 (1164)
T TIGR02169 420 EELADLNAAIAGIEAKINELEEEKEDKALEIKKQEWKLEQLAADLSKYEQELYD 473 (1164)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555555555555555555555555555555544433333333333333
No 10
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]
Probab=96.15 E-value=0.47 Score=51.98 Aligned_cols=107 Identities=24% Similarity=0.313 Sum_probs=90.6
Q ss_pred HHHHHHHHHHHhcCCCCCCcchhhHHhhhhhhhhhhhhhHhhhhhHHHhhhhhHHHHHHHHHHHHHHHHHHHHH--hhhh
Q 018386 109 LADFMAWFDLLRQKPKDGEPKSIEVSAFLDERAFLWNQYKVMENDLTSKINSKRAEVDRANERIEKLLASTEQL--QLSN 186 (357)
Q Consensus 109 L~DFka~~~~L~~~lke~SeKdkEVsALlaEKdFVWNQ~k~ME~Dyt~lLK~K~~EvaQAtE~iqKL~q~~EeL--Q~~n 186 (357)
-++|--.+..| .+-|+|+.+|||-.--|.|.+-..++..|.+ .|.+--+|-|.-|...=|.| +-..
T Consensus 404 ~~e~~QRva~l----------EkKvqa~~kERDalr~e~kslk~ela~~l~~--DeLaEkdE~I~~lm~EGEkLSK~ql~ 471 (961)
T KOG4673|consen 404 REEYHQRVATL----------EKKVQALTKERDALRREQKSLKKELAAALLK--DELAEKDEIINQLMAEGEKLSKKQLA 471 (961)
T ss_pred HHHHHHHHHHH----------HHHHHHHHHhHHHHHHHHHHHHHHHHHhhhh--HHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 36666666665 3569999999999999999988888888877 78888899999999988888 3344
Q ss_pred hhhhhHHHHHHHHHHhhhhcccchhhHHHHHHHHHHHHHhhcC
Q 018386 187 NEKDETIAKLKTQIAQMETGSKKWNTEISRLTQELELLRKSRT 229 (357)
Q Consensus 187 qeKDdeI~RLqak~aeMe~~~Kkk~eeIs~L~~eLe~lrk~r~ 229 (357)
| ...|-+|.||..+-+++.+++.+-|..|+-|++.|+++-.
T Consensus 472 q--s~iIkKLRAk~ke~etl~~K~ge~i~~L~sE~~~lk~il~ 512 (961)
T KOG4673|consen 472 Q--SAIIKKLRAKIKEAETLEEKKGELITKLQSEENKLKSILR 512 (961)
T ss_pred H--HHHHHHHHHHhhhhhHHHHHhhhHHHHHHHHHHHHHHHhh
Confidence 4 6789999999999999999999999999999999987643
No 11
>PRK03918 chromosome segregation protein; Provisional
Probab=95.79 E-value=2.8 Score=44.41 Aligned_cols=30 Identities=20% Similarity=0.409 Sum_probs=15.0
Q ss_pred HHHHHHhhhhcccchhhHHHHHHHHHHHHH
Q 018386 196 LKTQIAQMETGSKKWNTEISRLTQELELLR 225 (357)
Q Consensus 196 Lqak~aeMe~~~Kkk~eeIs~L~~eLe~lr 225 (357)
++.++.++.........+|..|...++.+.
T Consensus 403 l~~~i~~l~~~~~~~~~~i~eL~~~l~~L~ 432 (880)
T PRK03918 403 IEEEISKITARIGELKKEIKELKKAIEELK 432 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344333333455555666666665555
No 12
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=95.47 E-value=2 Score=45.56 Aligned_cols=95 Identities=21% Similarity=0.300 Sum_probs=50.8
Q ss_pred HHhhhhhhhhhhhhhHhhhhhHHHhh---hhhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHhhhhcccc
Q 018386 133 VSAFLDERAFLWNQYKVMENDLTSKI---NSKRAEVDRANERIEKLLASTEQLQLSNNEKDETIAKLKTQIAQMETGSKK 209 (357)
Q Consensus 133 VsALlaEKdFVWNQ~k~ME~Dyt~lL---K~K~~EvaQAtE~iqKL~q~~EeLQ~~nqeKDdeI~RLqak~aeMe~~~Kk 209 (357)
+..+-.+-...=+++.-++.++..+- ..-..++++..+.+..+...++.++....+-.+++..++.++..++.....
T Consensus 812 ~~~~~~~l~~~~~~~~~l~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~ 891 (1179)
T TIGR02168 812 LTLLNEEAANLRERLESLERRIAATERRLEDLEEQIEELSEDIESLAAEIEELEELIEELESELEALLNERASLEEALAL 891 (1179)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333344445555555443221 122223333344444455555555555555556666666667777777777
Q ss_pred hhhHHHHHHHHHHHHHhh
Q 018386 210 WNTEISRLTQELELLRKS 227 (357)
Q Consensus 210 k~eeIs~L~~eLe~lrk~ 227 (357)
...++..+..++..+...
T Consensus 892 ~~~~~~~~~~~~~~~~~~ 909 (1179)
T TIGR02168 892 LRSELEELSEELRELESK 909 (1179)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 777777777777666654
No 13
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=95.43 E-value=0.93 Score=51.29 Aligned_cols=141 Identities=22% Similarity=0.289 Sum_probs=75.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhHHHHHHhHHhHHHHHHHHHHHHHhhhhhhhchhhHHHHHHHHHh
Q 018386 23 MLKSQQEQIETLVKEREILEDHLKMQHEKWVSDVRLYEDHISQMKSEIVAQELIHLLDAAKSDMVVGLKLREASLLKLML 102 (357)
Q Consensus 23 MLr~~q~QvEsL~~ER~~LEa~ik~QhE~W~sdv~~lqdrLsqm~~el~~eE~~~~~EaAk~~l~LGlK~RE~~l~k~~l 102 (357)
=|...|.|++..=+|=++||..|+.+.- . + ....++.+-|+ ++.|+..++..-+
T Consensus 678 ~l~~~~~~~~~~q~el~~le~eL~~le~--------~----~-----~kf~~l~~ql~---------l~~~~l~l~~~r~ 731 (1174)
T KOG0933|consen 678 KLKQAQKELRAIQKELEALERELKSLEA--------Q----S-----QKFRDLKQQLE---------LKLHELALLEKRL 731 (1174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH--------H----H-----HHHHHHHHHHH---------HHHHHHHHHHHHH
Confidence 3456666777766676777777766544 0 0 12344444444 7888888888888
Q ss_pred hhch-----hHHHHHHHHHHHHhcCCCCC--CcchhhHHhhhhhhhhhhhhhHhhhhhHHHhhhhhHHHHHHHHHHHHHH
Q 018386 103 EYTD-----DQLADFMAWFDLLRQKPKDG--EPKSIEVSAFLDERAFLWNQYKVMENDLTSKINSKRAEVDRANERIEKL 175 (357)
Q Consensus 103 E~te-----DeL~DFka~~~~L~~~lke~--SeKdkEVsALlaEKdFVWNQ~k~ME~Dyt~lLK~K~~EvaQAtE~iqKL 175 (357)
++++ +++.-....+..+.+++++- .-|+++. -++++|++..+--.+++.+..-++-.|+.+
T Consensus 732 ~~~e~~~~~~~~~~~~e~v~e~~~~Ike~~~~~k~~~~------------~i~~lE~~~~d~~~~re~rlkdl~keik~~ 799 (1174)
T KOG0933|consen 732 EQNEFHKLLDDLKELLEEVEESEQQIKEKERALKKCED------------KISTLEKKMKDAKANRERRLKDLEKEIKTA 799 (1174)
T ss_pred hcChHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHhHhhhhhHhHHHHHHHHHHHH
Confidence 8887 34455555555555555542 1222221 234555555555555555555444444444
Q ss_pred HHHHHHHhhhhhhhhhHHHHHHHHHH
Q 018386 176 LASTEQLQLSNNEKDETIAKLKTQIA 201 (357)
Q Consensus 176 ~q~~EeLQ~~nqeKDdeI~RLqak~a 201 (357)
-+.+++--.--.++.++..+|+.+..
T Consensus 800 k~~~e~~~~~~ek~~~e~e~l~lE~e 825 (1174)
T KOG0933|consen 800 KQRAEESSKELEKRENEYERLQLEHE 825 (1174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444433333344444444444433
No 14
>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]
Probab=95.40 E-value=1.7 Score=46.89 Aligned_cols=150 Identities=19% Similarity=0.203 Sum_probs=82.0
Q ss_pred hhhhhhhhhhHHHHHHhHHhHHHH-HHHHHHHHHh-------------hhhhhhchhhHHHHHHHHHhhhchhHHHHHHH
Q 018386 49 HEKWVSDVRLYEDHISQMKSEIVA-QELIHLLDAA-------------KSDMVVGLKLREASLLKLMLEYTDDQLADFMA 114 (357)
Q Consensus 49 hE~W~sdv~~lqdrLsqm~~el~~-eE~~~~~EaA-------------k~~l~LGlK~RE~~l~k~~lE~teDeL~DFka 114 (357)
...|..+..-|++...-+...+.. ++-+..+..| +.+.-++.|+-|+.+.=.-+|-+-.=+.+..+
T Consensus 177 ~q~~~e~e~~L~~~~~~~~~q~~~le~ki~~lq~a~~~t~~el~~~~s~~dee~~~k~aev~lim~eLe~aq~ri~~lE~ 256 (629)
T KOG0963|consen 177 EQEWAEREAGLKDEEQNLQEQLEELEKKISSLQSAIEDTQNELFDLKSKYDEEVAAKAAEVSLIMTELEDAQQRIVFLER 256 (629)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345777777777766665544433 3333333222 22333555666665544444444445666777
Q ss_pred HHHHHhcCCCC-CCcchhhHHhhhhhhhhhhhhhHhhhhhHHHhhhhhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHH
Q 018386 115 WFDLLRQKPKD-GEPKSIEVSAFLDERAFLWNQYKVMENDLTSKINSKRAEVDRANERIEKLLASTEQLQLSNNEKDETI 193 (357)
Q Consensus 115 ~~~~L~~~lke-~SeKdkEVsALlaEKdFVWNQ~k~ME~Dyt~lLK~K~~EvaQAtE~iqKL~q~~EeLQ~~nqeKDdeI 193 (357)
++..|..++.. ++.++..=...++-..||-|| ||+.-.-+...=+-.-+--.+.+.+.-..+..|...+..|+.+|
T Consensus 257 e~e~L~~ql~~~N~~~~~~~~~~i~~~~~~L~~---kd~~i~~L~~di~~~~~S~~~e~e~~~~qI~~le~~l~~~~~~l 333 (629)
T KOG0963|consen 257 EVEQLREQLAKANSSKKLAKIDDIDALGSVLNQ---KDSEIAQLSNDIERLEASLVEEREKHKAQISALEKELKAKISEL 333 (629)
T ss_pred HHHHHHHHHHhhhhhhhhccCCchHHHHHHHhH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777777665 343333333445557888888 44444444443333333334444444455555666677777777
Q ss_pred HHHHHHHH
Q 018386 194 AKLKTQIA 201 (357)
Q Consensus 194 ~RLqak~a 201 (357)
-.|+.++.
T Consensus 334 eel~~kL~ 341 (629)
T KOG0963|consen 334 EELKEKLN 341 (629)
T ss_pred HHHHHHHh
Confidence 77777654
No 15
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=94.93 E-value=1.2 Score=51.09 Aligned_cols=113 Identities=21% Similarity=0.353 Sum_probs=58.3
Q ss_pred hHHHHHHHHHHHHhcCCCCC---CcchhhHHhhhhhhhhhhhhhHhhhhhHHHhhhhhHHHHHHHHHHHHHHHHHHHHHh
Q 018386 107 DQLADFMAWFDLLRQKPKDG---EPKSIEVSAFLDERAFLWNQYKVMENDLTSKINSKRAEVDRANERIEKLLASTEQLQ 183 (357)
Q Consensus 107 DeL~DFka~~~~L~~~lke~---SeKdkEVsALlaEKdFVWNQ~k~ME~Dyt~lLK~K~~EvaQAtE~iqKL~q~~EeLQ 183 (357)
+.|.+.+.-|..|..++.+. .-|..+|..|++ .|+.=+--+++..+++|.++++.+++|-+.+..++
T Consensus 858 ~~l~~~~~~ie~l~kE~e~~qe~~~Kk~~i~~lq~----------~i~~i~~e~~q~qk~kv~~~~~~~~~l~~~i~k~~ 927 (1293)
T KOG0996|consen 858 KRLKELEEQIEELKKEVEELQEKAAKKARIKELQN----------KIDEIGGEKVQAQKDKVEKINEQLDKLEADIAKLT 927 (1293)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH----------HHHHhhchhhHHhHHHHHHHHHHHHHHHHHHHHhH
Confidence 34555555555555544331 112445555543 23334455667777777777777777755555544
Q ss_pred hhhhhhhhHHHHHHH-----------------------------------HHHhhhhcccchhhHHHHHHHHHHHHHhhc
Q 018386 184 LSNNEKDETIAKLKT-----------------------------------QIAQMETGSKKWNTEISRLTQELELLRKSR 228 (357)
Q Consensus 184 ~~nqeKDdeI~RLqa-----------------------------------k~aeMe~~~Kkk~eeIs~L~~eLe~lrk~r 228 (357)
+.-..=+--|...|. .+.|-+...++.+.++..+..+++.+.++-
T Consensus 928 ~~i~~s~~~i~k~q~~l~~le~~~~~~e~e~~~L~e~~~~~~~k~~E~~~~~~e~~~~~~E~k~~~~~~k~~~e~i~k~~ 1007 (1293)
T KOG0996|consen 928 VAIKTSDRNIAKAQKKLSELEREIEDTEKELDDLTEELKGLEEKAAELEKEYKEAEESLKEIKKELRDLKSELENIKKSE 1007 (1293)
T ss_pred HHHhcCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333222222222222 233444455566666666677777776664
Q ss_pred C
Q 018386 229 T 229 (357)
Q Consensus 229 ~ 229 (357)
.
T Consensus 1008 ~ 1008 (1293)
T KOG0996|consen 1008 N 1008 (1293)
T ss_pred H
Confidence 4
No 16
>PRK02224 chromosome segregation protein; Provisional
Probab=94.67 E-value=7.3 Score=41.58 Aligned_cols=17 Identities=24% Similarity=0.259 Sum_probs=7.9
Q ss_pred chhhHHHHHHHHHHHHH
Q 018386 209 KWNTEISRLTQELELLR 225 (357)
Q Consensus 209 kk~eeIs~L~~eLe~lr 225 (357)
.....+..|..+++.++
T Consensus 409 ~~e~~l~~l~~~~~~l~ 425 (880)
T PRK02224 409 NAEDFLEELREERDELR 425 (880)
T ss_pred hhHHHHHHHHHHHHHHH
Confidence 33444444444444444
No 17
>PRK02224 chromosome segregation protein; Provisional
Probab=94.44 E-value=6.5 Score=41.96 Aligned_cols=56 Identities=23% Similarity=0.335 Sum_probs=32.7
Q ss_pred HHHHHHHHHhhhhhhhhhHHHHHHHHHHhhhhcccchhhHHHHHHHHHHHHHhhcC
Q 018386 174 KLLASTEQLQLSNNEKDETIAKLKTQIAQMETGSKKWNTEISRLTQELELLRKSRT 229 (357)
Q Consensus 174 KL~q~~EeLQ~~nqeKDdeI~RLqak~aeMe~~~Kkk~eeIs~L~~eLe~lrk~r~ 229 (357)
.+....+.|.....+..+++..+..++.+.+...+...++|..|+.+|+.++....
T Consensus 346 ~~~~~~~~le~~~~~l~~~~~~l~~~~~~~~~~l~~~~~~l~~l~~el~el~~~l~ 401 (880)
T PRK02224 346 SLREDADDLEERAEELREEAAELESELEEAREAVEDRREEIEELEEEIEELRERFG 401 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33444444444444444555555555556666666666777777777777666554
No 18
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=94.29 E-value=2.9 Score=46.89 Aligned_cols=69 Identities=25% Similarity=0.401 Sum_probs=34.1
Q ss_pred HhhhhhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHH-------hhhhcccchhhHHHHHHHHHHHH
Q 018386 156 SKINSKRAEVDRANERIEKLLASTEQLQLSNNEKDETIAKLKTQIA-------QMETGSKKWNTEISRLTQELELL 224 (357)
Q Consensus 156 ~lLK~K~~EvaQAtE~iqKL~q~~EeLQ~~nqeKDdeI~RLqak~a-------eMe~~~Kkk~eeIs~L~~eLe~l 224 (357)
..+.+.....+...+.+..+...++.++....+.+.+|..|+..+. +++.......+.+..+.++++.+
T Consensus 411 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 486 (1163)
T COG1196 411 ERLERLSERLEDLKEELKELEAELEELQTELEELNEELEELEEQLEELRDRLKELERELAELQEELQRLEKELSSL 486 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444555555555556666655555555555555555544433 33333334444444444444433
No 19
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=93.56 E-value=12 Score=42.92 Aligned_cols=206 Identities=22% Similarity=0.234 Sum_probs=107.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH----HHhhhhhhhhhhhhHHHHHHhHHhHHHH-HH----HHHHH---HHhhhhhhhc
Q 018386 22 KMLKSQQEQIETLVKEREILEDH----LKMQHEKWVSDVRLYEDHISQMKSEIVA-QE----LIHLL---DAAKSDMVVG 89 (357)
Q Consensus 22 kMLr~~q~QvEsL~~ER~~LEa~----ik~QhE~W~sdv~~lqdrLsqm~~el~~-eE----~~~~~---EaAk~~l~LG 89 (357)
++|.+..+..+.++..=.++++. .+.+++.--+.|-+.+.+|......+.. ++ +...+ ......+.-.
T Consensus 238 ~~l~k~i~e~~e~~~~~~~~e~~~~~l~~Lk~k~~W~~V~~~~~ql~~~~~~i~~~qek~~~l~~ki~~~~~k~~~~r~k 317 (1074)
T KOG0250|consen 238 KNLKKKIKEEEEKLDNLEQLEDLKENLEQLKAKMAWAWVNEVERQLNNQEEEIKKKQEKVDTLQEKIEEKQGKIEEARQK 317 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 44455555444444433333322 2344444334555556665555544444 11 11111 1222333334
Q ss_pred hhhHHHHHHHHHhhhch--hHHHHHHHHHHHHhcCCCCC----CcchhhHHhhhhhhhhhhhhhHhhhhhHHHhhhhhHH
Q 018386 90 LKLREASLLKLMLEYTD--DQLADFMAWFDLLRQKPKDG----EPKSIEVSAFLDERAFLWNQYKVMENDLTSKINSKRA 163 (357)
Q Consensus 90 lK~RE~~l~k~~lE~te--DeL~DFka~~~~L~~~lke~----SeKdkEVsALlaEKdFVWNQ~k~ME~Dyt~lLK~K~~ 163 (357)
+++-|+.+=.++-|... .|+.++++-++.+..+..+. .+.-..|.++-.+.|+..-|.-..+++....+..
T Consensus 318 ~teiea~i~~~~~e~~~~d~Ei~~~r~~~~~~~re~~~~~~~~~~~~n~i~~~k~~~d~l~k~I~~~~~~~~~~~~~--- 394 (1074)
T KOG0250|consen 318 LTEIEAKIGELKDEVDAQDEEIEEARKDLDDLRREVNDLKEEIREIENSIRKLKKEVDRLEKQIADLEKQTNNELGS--- 394 (1074)
T ss_pred hhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh---
Confidence 45555555555555444 46777877777777764442 2455566777778888888888888887655555
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHhhhhcccchhhHH-------HHHHHHHHHHHhhcCC
Q 018386 164 EVDRANERIEKLLASTEQLQLSNNEKDETIAKLKTQIAQMETGSKKWNTEI-------SRLTQELELLRKSRTA 230 (357)
Q Consensus 164 EvaQAtE~iqKL~q~~EeLQ~~nqeKDdeI~RLqak~aeMe~~~Kkk~eeI-------s~L~~eLe~lrk~r~a 230 (357)
+..+...++.-|.+.+|.||.....=.+++..++.++.+++-....-..+| +--+.+|+.|++.-+-
T Consensus 395 ~~~e~e~k~~~L~~evek~e~~~~~L~~e~~~~~~~~~~~~ee~~~i~~~i~~l~k~i~~~~~~l~~lk~~k~d 468 (1074)
T KOG0250|consen 395 ELEERENKLEQLKKEVEKLEEQINSLREELNEVKEKAKEEEEEKEHIEGEILQLRKKIENISEELKDLKKTKTD 468 (1074)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 444445566667777777765444334444444444444443333333333 3333445555555443
No 20
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=93.46 E-value=12 Score=39.48 Aligned_cols=31 Identities=13% Similarity=0.228 Sum_probs=12.9
Q ss_pred HHHHHHHHHhhhhcccchhhHHHHHHHHHHH
Q 018386 193 IAKLKTQIAQMETGSKKWNTEISRLTQELEL 223 (357)
Q Consensus 193 I~RLqak~aeMe~~~Kkk~eeIs~L~~eLe~ 223 (357)
|..+++++.......+..+++|..++.+++.
T Consensus 437 l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 467 (650)
T TIGR03185 437 LFRSEAEIEELLRQLETLKEAIEALRKTLDE 467 (650)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333444444444444433
No 21
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=93.44 E-value=3.9 Score=35.93 Aligned_cols=139 Identities=13% Similarity=0.260 Sum_probs=90.3
Q ss_pred HHhhhhhhhhhhhhHHHHHHhHHhHHHHHHHHHHHHHhhhhhhhchhhHHHHHHHHHhhhchhHHHHHHHHHHHHhcCCC
Q 018386 45 LKMQHEKWVSDVRLYEDHISQMKSEIVAQELIHLLDAAKSDMVVGLKLREASLLKLMLEYTDDQLADFMAWFDLLRQKPK 124 (357)
Q Consensus 45 ik~QhE~W~sdv~~lqdrLsqm~~el~~eE~~~~~EaAk~~l~LGlK~RE~~l~k~~lE~teDeL~DFka~~~~L~~~lk 124 (357)
++.--+.|.+++..++..+.+++. + .--++.|+..++.+....++||.-....+..+...+.
T Consensus 5 lk~E~d~a~~r~e~~e~~~K~le~---------~---------~~~~E~EI~sL~~K~~~lE~eld~~~~~l~~~k~~le 66 (143)
T PF12718_consen 5 LKLEADNAQDRAEELEAKVKQLEQ---------E---------NEQKEQEITSLQKKNQQLEEELDKLEEQLKEAKEKLE 66 (143)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHH---------H---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344557777777777777776552 1 2346788889999999999999888888888877776
Q ss_pred CCCcchhhHHhhhhhhhhhhhhhHhhhhhHHHhhhhhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHhhh
Q 018386 125 DGEPKSIEVSAFLDERAFLWNQYKVMENDLTSKINSKRAEVDRANERIEKLLASTEQLQLSNNEKDETIAKLKTQIAQME 204 (357)
Q Consensus 125 e~SeKdkEVsALlaEKdFVWNQ~k~ME~Dyt~lLK~K~~EvaQAtE~iqKL~q~~EeLQ~~nqeKDdeI~RLqak~aeMe 204 (357)
++.+....+. .+...+.--+-++++|.....-....+++....+ ..+.-++..++
T Consensus 67 e~~~~~~~~E------------------~l~rriq~LEeele~ae~~L~e~~ekl~e~d~~a-------e~~eRkv~~le 121 (143)
T PF12718_consen 67 ESEKRKSNAE------------------QLNRRIQLLEEELEEAEKKLKETTEKLREADVKA-------EHFERKVKALE 121 (143)
T ss_pred hHHHHHHhHH------------------HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-------HHHHHHHHHHH
Confidence 6543333322 4455555556666666655544444444443333 33444556666
Q ss_pred hcccchhhHHHHHHHHHHHHHh
Q 018386 205 TGSKKWNTEISRLTQELELLRK 226 (357)
Q Consensus 205 ~~~Kkk~eeIs~L~~eLe~lrk 226 (357)
.....|...+..|...+..+++
T Consensus 122 ~~~~~~E~k~eel~~k~~~~k~ 143 (143)
T PF12718_consen 122 QERDQWEEKYEELEEKYKEAKK 143 (143)
T ss_pred hhHHHHHHHHHHHHHHHHHhcC
Confidence 6666888999988888776653
No 22
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=93.29 E-value=9.5 Score=44.59 Aligned_cols=126 Identities=17% Similarity=0.203 Sum_probs=87.6
Q ss_pred HhhhchhHHHHHHHHHHHHhcCCCCCCcchhh---------HHhhhhhhhhhhhhhHhhhhhHHHhhhhhHHHHHHHHHH
Q 018386 101 MLEYTDDQLADFMAWFDLLRQKPKDGEPKSIE---------VSAFLDERAFLWNQYKVMENDLTSKINSKRAEVDRANER 171 (357)
Q Consensus 101 ~lE~teDeL~DFka~~~~L~~~lke~SeKdkE---------VsALlaEKdFVWNQ~k~ME~Dyt~lLK~K~~EvaQAtE~ 171 (357)
++.++-..|.+|-+.+..|+.+...+|.--++ -+|+-||+.|- ++..-=+--..+|.+|-.....|.+.
T Consensus 1613 ~~~~a~q~~~eL~~~~e~lk~~~~qns~~A~~a~~~a~sa~~~A~~a~q~~~--~lq~~~~~~~~l~~~r~~g~~~ar~r 1690 (1758)
T KOG0994|consen 1613 LATSATQQLGELETRMEELKHKAAQNSAEAKQAEKTAGSAKEQALSAEQGLE--ILQKYYELVDRLLEKRMEGSQAARER 1690 (1758)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHhhcchhHHHH
Confidence 34444456778888888888776665422221 23466676654 33322222345777777888899999
Q ss_pred HHHHHHHHHHHhhhhhhhhhHHHHHHHHHHhhhhcccchhhHHHHHHHHHHHHHhhc
Q 018386 172 IEKLLASTEQLQLSNNEKDETIAKLKTQIAQMETGSKKWNTEISRLTQELELLRKSR 228 (357)
Q Consensus 172 iqKL~q~~EeLQ~~nqeKDdeI~RLqak~aeMe~~~Kkk~eeIs~L~~eLe~lrk~r 228 (357)
|++|+...+.|=..+++|-+.|..|+.+.-.-+--...+-.+|-.|+.+|++++.--
T Consensus 1691 Ae~L~~eA~~Ll~~a~~kl~~l~dLe~~y~~~~~~L~~~~aeL~~Le~r~~~vl~~I 1747 (1758)
T KOG0994|consen 1691 AEQLRTEAEKLLGQANEKLDRLKDLELEYLRNEQALEDKAAELAGLEKRVESVLDHI 1747 (1758)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 999999999998889999999999987765444444566778888999998877643
No 23
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=92.98 E-value=13 Score=38.63 Aligned_cols=132 Identities=21% Similarity=0.268 Sum_probs=63.7
Q ss_pred hhHHHHHHHHHhhhchhHHHHHHHHH---HHHhcCCCCCCcchhhHHhhhhhhhhhhhh--------hHhhhhhHHHhhh
Q 018386 91 KLREASLLKLMLEYTDDQLADFMAWF---DLLRQKPKDGEPKSIEVSAFLDERAFLWNQ--------YKVMENDLTSKIN 159 (357)
Q Consensus 91 K~RE~~l~k~~lE~teDeL~DFka~~---~~L~~~lke~SeKdkEVsALlaEKdFVWNQ--------~k~ME~Dyt~lLK 159 (357)
+..+...|+.-++.++..+.++.-.+ ..|..+|.. -..+|..|.+| =+.|.. .+....++...|.
T Consensus 209 ~~~~~~~~~~~leeae~~l~~L~~e~~~~k~Le~kL~~---a~~~l~~Lq~E-l~~~~~~~l~~~~~~~~~~~~~~~~l~ 284 (522)
T PF05701_consen 209 REQDAEEWEKELEEAEEELEELKEELEAAKDLESKLAE---ASAELESLQAE-LEAAKESKLEEEAEAKEKSSELQSSLA 284 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHH-HHHHHHHHHhhhHHhhhhhhhHHHHHH
Confidence 33455556666666666665555555 222222222 22344444433 111111 1222234444566
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHhhhhcccchhhHHHHHHHHHHHHHh
Q 018386 160 SKRAEVDRANERIEKLLASTEQLQLSNNEKDETIAKLKTQIAQMETGSKKWNTEISRLTQELELLRK 226 (357)
Q Consensus 160 ~K~~EvaQAtE~iqKL~q~~EeLQ~~nqeKDdeI~RLqak~aeMe~~~Kkk~eeIs~L~~eLe~lrk 226 (357)
.-..|..+|+..+++.-.....|+..+.-=-.+|.+.+.++..+.-......-.|+-|..+|..+|.
T Consensus 285 s~~~ELe~ak~~L~~~k~E~~~L~~~vesL~~ELe~~K~el~~lke~e~~a~~~v~~L~~eL~~~r~ 351 (522)
T PF05701_consen 285 SAKKELEEAKKELEKAKEEASSLRASVESLRSELEKEKEELERLKEREKEASSEVSSLEAELNKTRS 351 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHH
Confidence 6666666666666655555555554444444455555555554444444445555555555554443
No 24
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=92.84 E-value=5.4 Score=42.57 Aligned_cols=64 Identities=27% Similarity=0.339 Sum_probs=40.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHH-----------HHhhhhcccchhhHHHHHHHHHHHHHh
Q 018386 163 AEVDRANERIEKLLASTEQLQLSNNEKDETIAKLKTQ-----------IAQMETGSKKWNTEISRLTQELELLRK 226 (357)
Q Consensus 163 ~EvaQAtE~iqKL~q~~EeLQ~~nqeKDdeI~RLqak-----------~aeMe~~~Kkk~eeIs~L~~eLe~lrk 226 (357)
-|+......|.-|...+-+|+..|.--...|..|+-. ++.-+...-+..+|+..|..|||.|+-
T Consensus 296 EEl~~~R~~i~~Lr~klselE~~n~~L~~~I~dL~~ql~e~~r~~e~~L~~kd~~i~~mReec~~l~~Elq~LlD 370 (546)
T KOG0977|consen 296 EELRRIRSRISGLRAKLSELESRNSALEKRIEDLEYQLDEDQRSFEQALNDKDAEIAKMREECQQLSVELQKLLD 370 (546)
T ss_pred HHHHHHHhcccchhhhhccccccChhHHHHHHHHHhhhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 4555555556666666666677777777777777544 334444455556677777777777654
No 25
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=92.80 E-value=21 Score=40.84 Aligned_cols=19 Identities=16% Similarity=0.006 Sum_probs=12.8
Q ss_pred hHHHHHHHHHHHHhcCCCC
Q 018386 107 DQLADFMAWFDLLRQKPKD 125 (357)
Q Consensus 107 DeL~DFka~~~~L~~~lke 125 (357)
.++.+.+.-+..|..++..
T Consensus 799 ~ei~~l~~qie~l~~~l~~ 817 (1311)
T TIGR00606 799 MELKDVERKIAQQAAKLQG 817 (1311)
T ss_pred HHHHHHHHHHHHHHHHhcc
Confidence 5667777777777766554
No 26
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=92.59 E-value=15 Score=41.39 Aligned_cols=42 Identities=21% Similarity=0.200 Sum_probs=23.7
Q ss_pred ccccccccccCCCCCccCCCCCccccccccCCCCCCcceeccccCCC
Q 018386 260 TAGIKGRLRKSGSSSVTPLSNYSTTTAQSLGGKNGDNVVVNKQMPAA 306 (357)
Q Consensus 260 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~k~~~~~ 306 (357)
-.|+.|++..-++ +=..|.+.-.- -.|.+-.||||..+-.|.
T Consensus 514 ~~Gv~G~v~~li~----v~~~y~~Aie~-alG~~l~~vVV~~~~~a~ 555 (1163)
T COG1196 514 LPGVYGPVAELIK----VKEKYETALEA-ALGNRLQAVVVENEEVAK 555 (1163)
T ss_pred CCCccchHHHhcC----cChHHHHHHHH-HcccccCCeeeCChHHHH
Confidence 5677776654432 22256554444 344555788887755543
No 27
>KOG1850 consensus Myosin-like coiled-coil protein [Cytoskeleton]
Probab=92.48 E-value=14 Score=37.84 Aligned_cols=134 Identities=20% Similarity=0.191 Sum_probs=75.2
Q ss_pred HHHHHHHHHHhcCCCCCCcchhhHHhhhhhhhhhhhhhHhhhhhHHHhhhhhHHHHHHHHHHHHHHHHHHHHHhhhhhhh
Q 018386 110 ADFMAWFDLLRQKPKDGEPKSIEVSAFLDERAFLWNQYKVMENDLTSKINSKRAEVDRANERIEKLLASTEQLQLSNNEK 189 (357)
Q Consensus 110 ~DFka~~~~L~~~lke~SeKdkEVsALlaEKdFVWNQ~k~ME~Dyt~lLK~K~~EvaQAtE~iqKL~q~~EeLQ~~nqeK 189 (357)
++.+-+=.-|+.++..-+.|..|...-|+--|=||.-||.==.-.+-++++-+.|.--=..+-.+--..+=+|-..++.+
T Consensus 211 e~~~~~e~qlK~ql~lY~aKyeefq~tl~KSNE~F~~fK~E~ekmtKk~kklEKE~l~wr~K~e~aNk~vL~la~ekt~~ 290 (391)
T KOG1850|consen 211 EEMKQVEGQLKEQLALYMAKYEEFQTTLAKSNELFTKFKQEMEKMTKKIKKLEKETLIWRTKWENANKAVLQLAEEKTVR 290 (391)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhHHH
Confidence 33333434444444444677777777777778788888752222333444433333222222222222233344567788
Q ss_pred hhHHHHHHHHHHhhhhcccchhhHHHHHHHHHHHHHhhcCC------CCccccccccccc
Q 018386 190 DETIAKLKTQIAQMETGSKKWNTEISRLTQELELLRKSRTA------SDTPVLNRCTRIA 243 (357)
Q Consensus 190 DdeI~RLqak~aeMe~~~Kkk~eeIs~L~~eLe~lrk~r~a------~~tpvl~~ct~~~ 243 (357)
|.+|.+||.++..+|-+-.-...+-..|...|+-+.---++ --||+..+|+...
T Consensus 291 ~k~~~~lq~kiq~LekLcRALq~ernel~~~~~~~e~~v~~k~~~~~la~pe~~~~~~~~ 350 (391)
T KOG1850|consen 291 DKEYETLQKKIQRLEKLCRALQTERNELNKKLEDLEAQVSAKNAMKDLATPESKPCIILD 350 (391)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHhcccchhhhhhhhcCcccccccccc
Confidence 99999999998876666555555555555555544433332 2478999998633
No 28
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=92.43 E-value=0.42 Score=51.36 Aligned_cols=114 Identities=25% Similarity=0.293 Sum_probs=65.8
Q ss_pred hhhhcccchhhHHHHHHHHHHHHHhhcC----CCCccccc--ccc--ccccccccCCCCcccccccccccc-cccccCCC
Q 018386 202 QMETGSKKWNTEISRLTQELELLRKSRT----ASDTPVLN--RCT--RIAGATTSNAGDSVQNRSSTAGIK-GRLRKSGS 272 (357)
Q Consensus 202 eMe~~~Kkk~eeIs~L~~eLe~lrk~r~----a~~tpvl~--~ct--~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 272 (357)
.++....+++.+|++|+.+|..+++-|. .-.|||.. --| .|+.+-. ..||+ |.+
T Consensus 485 ~L~~~L~e~~~~ve~L~~~l~~l~k~~~lE~sG~g~pvk~ve~~t~~~Ie~~e~------------~~gik~GDv----- 547 (652)
T COG2433 485 RLEKELEEKKKRVEELERKLAELRKMRKLELSGKGTPVKVVEKLTLEAIEEAEE------------EYGIKEGDV----- 547 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCcceehhhhhhHHHHHhHHH------------hhccccCcE-----
Confidence 3444445899999999999999997664 34577532 111 1111111 12221 110
Q ss_pred CCccCCCCCccccccccCCCCCCcceeccccCCCCCCccccccccccccccccccccccccCcccccccc
Q 018386 273 SSVTPLSNYSTTTAQSLGGKNGDNVVVNKQMPAAQVPLHVDSEKGTRSSKRKAVDVIPILDTPKLFSSKF 342 (357)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~~~~~~n~~~~k~~~~~~~~~~~~~~k~~r~~k~k~~~~~~~~e~pklfss~f 342 (357)
--|---|.-++.+|+-.+++.+.+|.+..++|.++-.. -.+.+|+++|+.|.-.+---.|
T Consensus 548 i~v~~~sG~g~~~a~~li~~~~raii~~~~~s~~A~e~----------f~~~~iPv~~~~dV~i~~ld~~ 607 (652)
T COG2433 548 ILVEDPSGGGARTAEELIDKKPRAIIRGEEMSHAAAEE----------FFKNEIPVLPEGDVQIIRLDEF 607 (652)
T ss_pred EEEEcCCCcchHhHHHHhccCcceEEccCccchHHHHH----------HhhcCCceeecCceEEEEecce
Confidence 00111233456788889999999999998886543222 2456788888776655444333
No 29
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=92.22 E-value=25 Score=40.17 Aligned_cols=67 Identities=15% Similarity=0.253 Sum_probs=33.3
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHH--hhhhhhhhhHHHHHHHHHHhhhhcccchhhHHHHHHHHHHHHHh
Q 018386 158 INSKRAEVDRANERIEKLLASTEQL--QLSNNEKDETIAKLKTQIAQMETGSKKWNTEISRLTQELELLRK 226 (357)
Q Consensus 158 LK~K~~EvaQAtE~iqKL~q~~EeL--Q~~nqeKDdeI~RLqak~aeMe~~~Kkk~eeIs~L~~eLe~lrk 226 (357)
++.-..++...+..-..+..++..+ +....+...+|..|..++++|. ......|..+|..++..|.+
T Consensus 1000 i~~l~kel~~~~~~kr~l~dnL~~~~~~~~l~el~~eI~~l~~~~~~~~--~~~~~~e~~~l~~~~~~l~~ 1068 (1311)
T TIGR00606 1000 MRLMRQDIDTQKIQERWLQDNLTLRKRENELKEVEEELKQHLKEMGQMQ--VLQMKQEHQKLEENIDLIKR 1068 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc--HHHHHHHHHHHHHHHHHHHH
Confidence 3333444455555555555555555 4444555566666666666442 23334444444444444433
No 30
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=91.96 E-value=11 Score=35.36 Aligned_cols=201 Identities=20% Similarity=0.262 Sum_probs=91.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh----------hhhhhhhhhhhHHHHHHhHHhHHHHHH-----HHHHHHHhh
Q 018386 19 ILVKMLKSQQEQIETLVKEREILEDHLKM----------QHEKWVSDVRLYEDHISQMKSEIVAQE-----LIHLLDAAK 83 (357)
Q Consensus 19 iLVkMLr~~q~QvEsL~~ER~~LEa~ik~----------QhE~W~sdv~~lqdrLsqm~~el~~eE-----~~~~~EaAk 83 (357)
++-.-|+....+|..+..++.+|+-.+.- +++........++..|..+++.+..+- +...++..+
T Consensus 51 ~ye~el~~lr~~id~~~~eka~l~~e~~~l~~e~~~~r~k~e~e~~~~~~le~el~~lrk~ld~~~~~r~~le~~i~~L~ 130 (312)
T PF00038_consen 51 MYEEELRELRRQIDDLSKEKARLELEIDNLKEELEDLRRKYEEELAERKDLEEELESLRKDLDEETLARVDLENQIQSLK 130 (312)
T ss_dssp HHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhhHHHHhHHhhhhHHHHhhHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHhHHHHHHHHHH
Confidence 35555577888888888888888776633 333334444445555555555544422 344444445
Q ss_pred hhhhhchhhHHHHHHHHHhhhch---hH-----HHHHHHHHHHHhcCCCCCCcchhhHHhhhhhhhhhhhhhHhhhh---
Q 018386 84 SDMVVGLKLREASLLKLMLEYTD---DQ-----LADFMAWFDLLRQKPKDGEPKSIEVSAFLDERAFLWNQYKVMEN--- 152 (357)
Q Consensus 84 ~~l~LGlK~RE~~l~k~~lE~te---De-----L~DFka~~~~L~~~lke~SeKdkEVsALlaEKdFVWNQ~k~ME~--- 152 (357)
.++.+=.+.++.++-.+....+. -+ -.||...+..+...|.....+ -.+--..|.+-++-+-
T Consensus 131 eEl~fl~~~heeEi~~L~~~~~~~~~~e~~~~~~~dL~~~L~eiR~~ye~~~~~-------~~~e~e~~y~~k~~~l~~~ 203 (312)
T PF00038_consen 131 EELEFLKQNHEEEIEELREQIQSSVTVEVDQFRSSDLSAALREIRAQYEEIAQK-------NREELEEWYQSKLEELRQQ 203 (312)
T ss_dssp HHHHHHHHHHHHHHHTTSTT----------------HHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhhhhhhhhhhccccccceeecccccccchhhhhhHHHHHHHHHhh-------hhhhhhhhccccccccccc
Confidence 55444444444443333333310 01 134444444444443321111 1111223444443221
Q ss_pred --hHHHhhhhhHHHHHHHHHHHHHHHHHHHHHhhhhh-----------hhhhHHHHHHHHHHhhhhcccchhhHHHHHHH
Q 018386 153 --DLTSKINSKRAEVDRANERIEKLLASTEQLQLSNN-----------EKDETIAKLKTQIAQMETGSKKWNTEISRLTQ 219 (357)
Q Consensus 153 --Dyt~lLK~K~~EvaQAtE~iqKL~q~~EeLQ~~nq-----------eKDdeI~RLqak~aeMe~~~Kkk~eeIs~L~~ 219 (357)
-....+..-+.|+......++.|...++.|+..+. ..+.+...+++.++.++....+...+|.....
T Consensus 204 ~~~~~~~~~~~~~E~~~~r~~~~~l~~el~~l~~~~~~Le~~l~~le~~~~~~~~~~~~~i~~le~el~~l~~~~~~~~~ 283 (312)
T PF00038_consen 204 SEKSSEELESAKEELKELRRQIQSLQAELESLRAKNASLERQLRELEQRLDEEREEYQAEIAELEEELAELREEMARQLR 283 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccccccchhHhHHHHHHhhhhHhhhhhhccccchhhhhhhHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHH
Confidence 11222333334444444444444444443333222 22333333444555555555577777777777
Q ss_pred HHHHHHh
Q 018386 220 ELELLRK 226 (357)
Q Consensus 220 eLe~lrk 226 (357)
+.+.|-.
T Consensus 284 ey~~Ll~ 290 (312)
T PF00038_consen 284 EYQELLD 290 (312)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 7666643
No 31
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=91.84 E-value=12 Score=35.59 Aligned_cols=31 Identities=10% Similarity=0.105 Sum_probs=16.5
Q ss_pred chhhHHHHHHHHHHHHHhhcCCCCccccccccc
Q 018386 209 KWNTEISRLTQELELLRKSRTASDTPVLNRCTR 241 (357)
Q Consensus 209 kk~eeIs~L~~eLe~lrk~r~a~~tpvl~~ct~ 241 (357)
....++..+..+++.++.... .|.|.-||+.
T Consensus 250 ~~~~~l~~~~~~l~~~~~~l~--~~~i~AP~dG 280 (423)
T TIGR01843 250 EAQARLAELRERLNKARDRLQ--RLIIRSPVDG 280 (423)
T ss_pred HHHHHHHHHHHHHHHHHHHHh--hcEEECCCCc
Confidence 445555566666665554333 4555555554
No 32
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=91.74 E-value=18 Score=43.74 Aligned_cols=71 Identities=27% Similarity=0.408 Sum_probs=43.6
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHH-------hhhhcccchhhHHHHHHHHHHHHHhhcC
Q 018386 159 NSKRAEVDRANERIEKLLASTEQLQLSNNEKDETIAKLKTQIA-------QMETGSKKWNTEISRLTQELELLRKSRT 229 (357)
Q Consensus 159 K~K~~EvaQAtE~iqKL~q~~EeLQ~~nqeKDdeI~RLqak~a-------eMe~~~Kkk~eeIs~L~~eLe~lrk~r~ 229 (357)
++.+-+..-++|.+..+....++|+...-+|..++..++.++. .++...++.-..|..|..+|+.-|-+|.
T Consensus 1044 rkle~el~~~~e~~~~~~~~~~el~~~l~kke~El~~l~~k~e~e~~~~~~l~k~i~eL~~~i~el~e~le~er~~r~ 1121 (1930)
T KOG0161|consen 1044 RKLEGELKDLQESIEELKKQKEELDNQLKKKESELSQLQSKLEDEQAEVAQLQKQIKELEARIKELEEELEAERASRA 1121 (1930)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555556666666777777777777777777777766533 4444555555556666666666665553
No 33
>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures. The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.
Probab=91.66 E-value=0.72 Score=36.63 Aligned_cols=68 Identities=26% Similarity=0.436 Sum_probs=53.9
Q ss_pred hHHHhhhhhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHhhhhcccchhhHHHHHHHHHHHHHhh
Q 018386 153 DLTSKINSKRAEVDRANERIEKLLASTEQLQLSNNEKDETIAKLKTQIAQMETGSKKWNTEISRLTQELELLRKS 227 (357)
Q Consensus 153 Dyt~lLK~K~~EvaQAtE~iqKL~q~~EeLQ~~nqeKDdeI~RLqak~aeMe~~~Kkk~eeIs~L~~eLe~lrk~ 227 (357)
++..+|+.|+..++ .|+..-+.|......-.+.|.+|++++.+.+......+..+..++.+++.|+..
T Consensus 2 sl~~~l~EKDe~Ia-------~L~eEGekLSk~el~~~~~IKKLr~~~~e~e~~~~~l~~~~~~~e~~~~~l~~~ 69 (74)
T PF12329_consen 2 SLEKKLAEKDEQIA-------QLMEEGEKLSKKELKLNNTIKKLRAKIKELEKQIKELKKKLEELEKELESLEER 69 (74)
T ss_pred hHHHHHHhHHHHHH-------HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34456677665554 456666666666666688999999999999999999999999999999999864
No 34
>PRK11637 AmiB activator; Provisional
Probab=91.63 E-value=16 Score=36.51 Aligned_cols=28 Identities=14% Similarity=0.360 Sum_probs=13.5
Q ss_pred HHHHHHHHHHhhhhcccchhhHHHHHHH
Q 018386 192 TIAKLKTQIAQMETGSKKWNTEISRLTQ 219 (357)
Q Consensus 192 eI~RLqak~aeMe~~~Kkk~eeIs~L~~ 219 (357)
++...++++++++...++....|.+|..
T Consensus 227 ~~~~~~~~l~~l~~~~~~L~~~I~~l~~ 254 (428)
T PRK11637 227 SLQKDQQQLSELRANESRLRDSIARAER 254 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444455555555544
No 35
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=91.50 E-value=5.7 Score=36.83 Aligned_cols=32 Identities=22% Similarity=0.415 Sum_probs=15.0
Q ss_pred hHHHHHHHHHHhhhhcccchhhHHHHHHHHHH
Q 018386 191 ETIAKLKTQIAQMETGSKKWNTEISRLTQELE 222 (357)
Q Consensus 191 deI~RLqak~aeMe~~~Kkk~eeIs~L~~eLe 222 (357)
..+.+|+..+..++.....+++....+..+|.
T Consensus 197 ~~v~~Le~~id~le~eL~~~k~~~~~~~~eld 228 (237)
T PF00261_consen 197 RRVKKLEKEIDRLEDELEKEKEKYKKVQEELD 228 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444455555555555543
No 36
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=91.49 E-value=11 Score=40.38 Aligned_cols=18 Identities=44% Similarity=0.632 Sum_probs=8.6
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 018386 28 QEQIETLVKEREILEDHL 45 (357)
Q Consensus 28 q~QvEsL~~ER~~LEa~i 45 (357)
+...++|+.....|+...
T Consensus 149 qkE~eeL~~~~~~Le~e~ 166 (546)
T PF07888_consen 149 QKEKEELLKENEQLEEEV 166 (546)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344444555555555544
No 37
>KOG4807 consensus F-actin binding protein, regulates actin cytoskeletal organization [Cytoskeleton]
Probab=91.34 E-value=9 Score=40.34 Aligned_cols=183 Identities=21% Similarity=0.224 Sum_probs=98.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhHHH----HHHhHHhHHHHHHHHHHHHHhhhhhhhchhhHHHHH
Q 018386 22 KMLKSQQEQIETLVKEREILEDHLKMQHEKWVSDVRLYED----HISQMKSEIVAQELIHLLDAAKSDMVVGLKLREASL 97 (357)
Q Consensus 22 kMLr~~q~QvEsL~~ER~~LEa~ik~QhE~W~sdv~~lqd----rLsqm~~el~~eE~~~~~EaAk~~l~LGlK~RE~~l 97 (357)
+-++--.+|++..--+=+-++.-+..|.|+...+..++++ .+..|.. +|+..+.-+. .+++.++
T Consensus 298 k~vQ~L~AQle~~R~q~e~~q~~~~s~~d~~~~~~~~~qatCERgfAaMEe--tHQkkiEdLQ----------RqHqREL 365 (593)
T KOG4807|consen 298 KEVQALRAQLEAWRLQGEAPQSALRSQEDGHIPPGYISQATCERGFAAMEE--THQKKIEDLQ----------RQHQREL 365 (593)
T ss_pred HHHHHHHHHHHHHHHhccCchhhHhhhhhccCCccHHHHHHHHhhHHHHHH--HHHHHHHHHH----------HHHHHHH
Confidence 3335556777766555567777888898888888776554 4555553 4433322222 1222222
Q ss_pred HH-------HHhhhchhH---HHHHHHH-HHHHhcCCCC----CC-------cchhhHHhhhhhhhhhhhhh--Hhhhhh
Q 018386 98 LK-------LMLEYTDDQ---LADFMAW-FDLLRQKPKD----GE-------PKSIEVSAFLDERAFLWNQY--KVMEND 153 (357)
Q Consensus 98 ~k-------~~lE~teDe---L~DFka~-~~~L~~~lke----~S-------eKdkEVsALlaEKdFVWNQ~--k~ME~D 153 (357)
-+ +++|.|.-- ++..+.. -..+.-+|.. ++ .--.||.++.+|=.++=.|| ||+|+.
T Consensus 366 ekLreEKdrLLAEETAATiSAIEAMKnAhrEEmeRELeKsqSvnsdveaLRrQyleelqsvqRELeVLSEQYSQKCLEna 445 (593)
T KOG4807|consen 366 EKLREEKDRLLAEETAATISAIEAMKNAHREEMERELEKSQSVNSDVEALRRQYLEELQSVQRELEVLSEQYSQKCLENA 445 (593)
T ss_pred HHHHHHHHhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHhhhccccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22 244444322 2222111 1111222222 11 33467888889988888888 688876
Q ss_pred HHHhhhhhHHHHHHHHHHHHHHHHHHHH---H----hhhhhhhhhHHHHHHHHHH-----------------hhhhcccc
Q 018386 154 LTSKINSKRAEVDRANERIEKLLASTEQ---L----QLSNNEKDETIAKLKTQIA-----------------QMETGSKK 209 (357)
Q Consensus 154 yt~lLK~K~~EvaQAtE~iqKL~q~~Ee---L----Q~~nqeKDdeI~RLqak~a-----------------eMe~~~Kk 209 (357)
.-. -++.+.-+-|.+|..+ | |..|+-=..||.||..=++ |+|++..-
T Consensus 446 hLa---------qalEaerqaLRqCQrEnQELnaHNQELnnRLaaEItrLRtlltgdGgGtGsplaqgkdayELEVLLRV 516 (593)
T KOG4807|consen 446 HLA---------QALEAERQALRQCQRENQELNAHNQELNNRLAAEITRLRTLLTGDGGGTGSPLAQGKDAYELEVLLRV 516 (593)
T ss_pred HHH---------HHHHHHHHHHHHHHHhhHHHHHHHHHHhhHHHHHHHHHHHHhccCCCCCCCccccCcchhhHHHHHHh
Confidence 531 1222233455555443 3 2334445678888877655 56665544
Q ss_pred h-------hhHHHHHHHHHHHHH
Q 018386 210 W-------NTEISRLTQELELLR 225 (357)
Q Consensus 210 k-------~eeIs~L~~eLe~lr 225 (357)
| +.||+-|.+|||-+-
T Consensus 517 KEsEiQYLKqEissLkDELQtal 539 (593)
T KOG4807|consen 517 KESEIQYLKQEISSLKDELQTAL 539 (593)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHH
Confidence 4 556666666776553
No 38
>PRK03918 chromosome segregation protein; Provisional
Probab=90.89 E-value=25 Score=37.46 Aligned_cols=12 Identities=17% Similarity=0.407 Sum_probs=5.9
Q ss_pred hhhhhHhhhhhH
Q 018386 143 LWNQYKVMENDL 154 (357)
Q Consensus 143 VWNQ~k~ME~Dy 154 (357)
+++++..+++++
T Consensus 305 l~~~~~~l~~~~ 316 (880)
T PRK03918 305 YLDELREIEKRL 316 (880)
T ss_pred HHHHHHHHHHHH
Confidence 455555555444
No 39
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=90.69 E-value=23 Score=36.81 Aligned_cols=199 Identities=15% Similarity=0.168 Sum_probs=103.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhHHHHHHhHHh-HHHHHHHHHHHHHhhhhhhhchhhHHHHHHHHH
Q 018386 23 MLKSQQEQIETLVKEREILEDHLKMQHEKWVSDVRLYEDHISQMKS-EIVAQELIHLLDAAKSDMVVGLKLREASLLKLM 101 (357)
Q Consensus 23 MLr~~q~QvEsL~~ER~~LEa~ik~QhE~W~sdv~~lqdrLsqm~~-el~~eE~~~~~EaAk~~l~LGlK~RE~~l~k~~ 101 (357)
.|...+..++.|-.+- -....++.+.+.+..++..++..|.+... .+.... ...-........|+--..|..-.+.-
T Consensus 219 ~leeae~~l~~L~~e~-~~~k~Le~kL~~a~~~l~~Lq~El~~~~~~~l~~~~-~~~~~~~~~~~~l~s~~~ELe~ak~~ 296 (522)
T PF05701_consen 219 ELEEAEEELEELKEEL-EAAKDLESKLAEASAELESLQAELEAAKESKLEEEA-EAKEKSSELQSSLASAKKELEEAKKE 296 (522)
T ss_pred HHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhH-HhhhhhhhHHHHHHHHHHHHHHHHHH
Confidence 3466777777776665 34445566667777888888888777542 111111 00001111223366666777777777
Q ss_pred hhhchhHHHHHHHHHHHHhcCCCCC-----------CcchhhHHhhhhhhhhhhhhhHhhhhhHHHhhhhhHHHHHHHHH
Q 018386 102 LEYTDDQLADFMAWFDLLRQKPKDG-----------EPKSIEVSAFLDERAFLWNQYKVMENDLTSKINSKRAEVDRANE 170 (357)
Q Consensus 102 lE~teDeL~DFka~~~~L~~~lke~-----------SeKdkEVsALlaEKdFVWNQ~k~ME~Dyt~lLK~K~~EvaQAtE 170 (357)
|+.+.+|+..|++.+.-|..+|... ......|+.|-.+-+=+=..+..+...-. +-+....-.+.
T Consensus 297 L~~~k~E~~~L~~~vesL~~ELe~~K~el~~lke~e~~a~~~v~~L~~eL~~~r~eLea~~~~e~----~~k~~~~~l~~ 372 (522)
T PF05701_consen 297 LEKAKEEASSLRASVESLRSELEKEKEELERLKEREKEASSEVSSLEAELNKTRSELEAAKAEEE----KAKEAMSELPK 372 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHHHhhhc----chhhhHHHHHH
Confidence 7777788888888888777775441 23344455555554433333322221111 00111222333
Q ss_pred HHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHhhhhcccchhhHHHHHHHHHHHHHhh
Q 018386 171 RIEKLLASTEQLQLSNNEKDETIAKLKTQIAQMETGSKKWNTEISRLTQELELLRKS 227 (357)
Q Consensus 171 ~iqKL~q~~EeLQ~~nqeKDdeI~RLqak~aeMe~~~Kkk~eeIs~L~~eLe~lrk~ 227 (357)
.++.+....+++......--.++.+++.++.......+.....+.-...+++-.|-+
T Consensus 373 ~Lqql~~Eae~Ak~ea~~~~~E~~~~k~E~e~~ka~i~t~E~rL~aa~ke~eaaKas 429 (522)
T PF05701_consen 373 ALQQLSSEAEEAKKEAEEAKEEVEKAKEEAEQTKAAIKTAEERLEAALKEAEAAKAS 429 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444445555555555544444445555555555555555544
No 40
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=90.31 E-value=51 Score=40.07 Aligned_cols=41 Identities=24% Similarity=0.348 Sum_probs=30.7
Q ss_pred hhhhhhHHHHHHHHHHhhhhcccchhhHHHHHHHHHHHHHh
Q 018386 186 NNEKDETIAKLKTQIAQMETGSKKWNTEISRLTQELELLRK 226 (357)
Q Consensus 186 nqeKDdeI~RLqak~aeMe~~~Kkk~eeIs~L~~eLe~lrk 226 (357)
.++--++|..|+.+++.+++..+..+.+|.....++..|+.
T Consensus 1245 ~qEl~~~i~kl~~el~plq~~l~el~~e~~~~~ael~~l~~ 1285 (1822)
T KOG4674|consen 1245 IQELRDKIEKLNFELAPLQNELKELKAELQEKVAELKKLEE 1285 (1822)
T ss_pred HHHHHHHHHHHHhhHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35556677777777778888888888888888888877764
No 41
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=90.00 E-value=2.3 Score=33.98 Aligned_cols=66 Identities=26% Similarity=0.374 Sum_probs=57.1
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHhhhhcccchhhHHHHHHHHHHH
Q 018386 158 INSKRAEVDRANERIEKLLASTEQLQLSNNEKDETIAKLKTQIAQMETGSKKWNTEISRLTQELEL 223 (357)
Q Consensus 158 LK~K~~EvaQAtE~iqKL~q~~EeLQ~~nqeKDdeI~RLqak~aeMe~~~Kkk~eeIs~L~~eLe~ 223 (357)
|..=+.-|.+|-+.|+-|+..+++|+..|..-.++...|+.+...+..+...|.+.|.-|-+.|+.
T Consensus 6 l~~LE~ki~~aveti~~Lq~e~eeLke~n~~L~~e~~~L~~en~~L~~e~~~~~~rl~~LL~kl~~ 71 (72)
T PF06005_consen 6 LEQLEEKIQQAVETIALLQMENEELKEKNNELKEENEELKEENEQLKQERNAWQERLRSLLGKLEE 71 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 444456788999999999999999999998889999999999999999999999999998887764
No 42
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=89.96 E-value=31 Score=37.08 Aligned_cols=25 Identities=20% Similarity=0.201 Sum_probs=16.0
Q ss_pred HhhhhhhhhhhhhHHHHHHhHHhHH
Q 018386 46 KMQHEKWVSDVRLYEDHISQMKSEI 70 (357)
Q Consensus 46 k~QhE~W~sdv~~lqdrLsqm~~el 70 (357)
+.+++-...++..|+..|..|....
T Consensus 212 ~~q~~e~~~ri~~LEedi~~l~qk~ 236 (546)
T PF07888_consen 212 KEQLAEARQRIRELEEDIKTLTQKE 236 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455556667777777777665443
No 43
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=89.42 E-value=1.6 Score=38.29 Aligned_cols=70 Identities=27% Similarity=0.403 Sum_probs=52.6
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHhhhhcccchhhHHHHHHHHHHHHHhh
Q 018386 158 INSKRAEVDRANERIEKLLASTEQLQLSNNEKDETIAKLKTQIAQMETGSKKWNTEISRLTQELELLRKS 227 (357)
Q Consensus 158 LK~K~~EvaQAtE~iqKL~q~~EeLQ~~nqeKDdeI~RLqak~aeMe~~~Kkk~eeIs~L~~eLe~lrk~ 227 (357)
+...++|++.|++.+..+.+.+-+|...+-.++.+|.-|+.++...|..+.+..+.+..+...|+..-+.
T Consensus 2 m~~lk~E~d~a~~r~e~~e~~~K~le~~~~~~E~EI~sL~~K~~~lE~eld~~~~~l~~~k~~lee~~~~ 71 (143)
T PF12718_consen 2 MQALKLEADNAQDRAEELEAKVKQLEQENEQKEQEITSLQKKNQQLEEELDKLEEQLKEAKEKLEESEKR 71 (143)
T ss_pred hHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 4456678888888888888888888888888888888888888777777777666666666666655443
No 44
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=89.12 E-value=36 Score=38.67 Aligned_cols=152 Identities=18% Similarity=0.225 Sum_probs=77.5
Q ss_pred HHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhHHHHHHhHHhHHHHHHHHHHHHHhhhhhhhchhh
Q 018386 14 QKRDKI-LVKMLKSQQEQIETLVKEREILEDHLKMQHEKWVSDVRLYEDHISQMKSEIVAQELIHLLDAAKSDMVVGLKL 92 (357)
Q Consensus 14 ~~W~ri-LVkMLr~~q~QvEsL~~ER~~LEa~ik~QhE~W~sdv~~lqdrLsqm~~el~~eE~~~~~EaAk~~l~LGlK~ 92 (357)
-+|.|+ .-.||-+...+-|..+..-+ +.+..|- +..-|++.++++.. +-.|+++.+..++..+--=.+.
T Consensus 411 lewErar~qem~~Qk~reqe~iv~~na----k~~ql~~----eletLn~k~qqls~--kl~Dvr~~~tt~kt~ie~~~~q 480 (1118)
T KOG1029|consen 411 LEWERARRQEMLNQKNREQEWIVYLNA----KKKQLQQ----ELETLNFKLQQLSG--KLQDVRVDITTQKTEIEEVTKQ 480 (1118)
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHH----HHHHHHH----HHHHHHHHHHHHhh--hhhhheeccchHHHHHHHhhhH
Confidence 367777 55566666666666655332 2222222 34445555555554 2344555566666655555555
Q ss_pred HHHHHHHHHhhhchhHHHHHHHHHHHHhcC--------------CCC-------CCcchhhHHhhhhhhhhhhhhhHhhh
Q 018386 93 REASLLKLMLEYTDDQLADFMAWFDLLRQK--------------PKD-------GEPKSIEVSAFLDERAFLWNQYKVME 151 (357)
Q Consensus 93 RE~~l~k~~lE~teDeL~DFka~~~~L~~~--------------lke-------~SeKdkEVsALlaEKdFVWNQ~k~ME 151 (357)
||..+ .++..+++.|-.+... ++. -+....++.|++++|+...++++--=
T Consensus 481 ~e~~i---------sei~qlqarikE~q~kl~~l~~Ekq~l~~qlkq~q~a~~~~~~~~s~L~aa~~~ke~irq~ikdql 551 (1118)
T KOG1029|consen 481 RELMI---------SEIDQLQARIKELQEKLQKLAPEKQELNHQLKQKQSAHKETTQRKSELEAARRKKELIRQAIKDQL 551 (1118)
T ss_pred HHHHH---------HHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhhccCcchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55542 2333333333333322 222 23446788899999999998776422
Q ss_pred hhHHHhhhhhHHHHHHHHHHHHHHHHHHHHHhh
Q 018386 152 NDLTSKINSKRAEVDRANERIEKLLASTEQLQL 184 (357)
Q Consensus 152 ~Dyt~lLK~K~~EvaQAtE~iqKL~q~~EeLQ~ 184 (357)
-+..--..+|..|+.--+--..+|...+.-+|.
T Consensus 552 delskE~esk~~eidi~n~qlkelk~~~~~q~l 584 (1118)
T KOG1029|consen 552 DELSKETESKLNEIDIFNNQLKELKEDVNSQQL 584 (1118)
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHH
Confidence 222222233334444444444555555555543
No 45
>PF13863 DUF4200: Domain of unknown function (DUF4200)
Probab=88.80 E-value=8.3 Score=31.73 Aligned_cols=80 Identities=21% Similarity=0.273 Sum_probs=50.2
Q ss_pred hhhhhhHhhhhhHHHhhhhhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHhhhhcccchhhHHHHHHHHH
Q 018386 142 FLWNQYKVMENDLTSKINSKRAEVDRANERIEKLLASTEQLQLSNNEKDETIAKLKTQIAQMETGSKKWNTEISRLTQEL 221 (357)
Q Consensus 142 FVWNQ~k~ME~Dyt~lLK~K~~EvaQAtE~iqKL~q~~EeLQ~~nqeKDdeI~RLqak~aeMe~~~Kkk~eeIs~L~~eL 221 (357)
..|.+++-.|..+..-+-+=+.-+.....+...-.+..++-.....+|..+|.+|.+++. ....+|++|...|
T Consensus 32 ~~e~~L~~~e~~l~~~~~~f~~flken~~k~~rA~k~a~~e~k~~~~k~~ei~~l~~~l~-------~l~~~~~k~e~~l 104 (126)
T PF13863_consen 32 QREEELEKKEQELEEDVIKFDKFLKENEAKRERAEKRAEEEKKKKEEKEAEIKKLKAELE-------ELKSEISKLEEKL 104 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHH
Confidence 345666655555554444433334334444444455556666667888999999999998 4566777777777
Q ss_pred HHHHhhc
Q 018386 222 ELLRKSR 228 (357)
Q Consensus 222 e~lrk~r 228 (357)
+.+....
T Consensus 105 ~~~~~Y~ 111 (126)
T PF13863_consen 105 EEYKKYE 111 (126)
T ss_pred HHHHHHH
Confidence 7766554
No 46
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=88.40 E-value=51 Score=40.22 Aligned_cols=27 Identities=19% Similarity=0.401 Sum_probs=11.9
Q ss_pred hHHHhhhhhHHHHHHHHHHHHHHHHHH
Q 018386 153 DLTSKINSKRAEVDRANERIEKLLAST 179 (357)
Q Consensus 153 Dyt~lLK~K~~EvaQAtE~iqKL~q~~ 179 (357)
++...|++|+.|.-+.+..+..+...+
T Consensus 1066 el~~~l~kke~El~~l~~k~e~e~~~~ 1092 (1930)
T KOG0161|consen 1066 ELDNQLKKKESELSQLQSKLEDEQAEV 1092 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 444444444444444444443333333
No 47
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=88.29 E-value=48 Score=38.41 Aligned_cols=33 Identities=21% Similarity=0.286 Sum_probs=27.7
Q ss_pred cchhhHHhhhhhhhhhhhhhHhhhhhHHHhhhhh
Q 018386 128 PKSIEVSAFLDERAFLWNQYKVMENDLTSKINSK 161 (357)
Q Consensus 128 eKdkEVsALlaEKdFVWNQ~k~ME~Dyt~lLK~K 161 (357)
.-+.|++-|.+.++|.=+||++|---|+ ++++|
T Consensus 499 ~r~~elsrl~a~~~elkeQ~kt~~~qye-~~~~k 531 (1195)
T KOG4643|consen 499 NRDLELSRLHALKNELKEQYKTCDIQYE-LLSNK 531 (1195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHH
Confidence 5688999999999999999999988887 44444
No 48
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=87.93 E-value=6 Score=34.70 Aligned_cols=41 Identities=22% Similarity=0.285 Sum_probs=22.5
Q ss_pred hhhhhhhhhHhhhhhHHHhhhhhHHHHHHHHHHHHHHHHHHHHHh
Q 018386 139 ERAFLWNQYKVMENDLTSKINSKRAEVDRANERIEKLLASTEQLQ 183 (357)
Q Consensus 139 EKdFVWNQ~k~ME~Dyt~lLK~K~~EvaQAtE~iqKL~q~~EeLQ 183 (357)
+=+..+..|+.|++++..+. .++.+..+.++.+.+.++.++
T Consensus 131 ~l~~l~~~~~~~~~e~~~l~----~~~~~~~~~~~~~~~~~~~~~ 171 (191)
T PF04156_consen 131 RLDSLDESIKELEKEIRELQ----KELQDSREEVQELRSQLERLQ 171 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHH
Confidence 33445566666666666655 344445555555555555553
No 49
>PF06818 Fez1: Fez1; InterPro: IPR009638 This family represents the eukaryotic Fez1 protein. Fez1 contains a leucine-zipper region with similarity to the DNA-binding domain of the cAMP-responsive activating-transcription factor 5 []. There is evidence that Fez1 inhibits cancer cell growth through regulation of mitosis, and that its alterations result in abnormal cell growth []. Note that some family members contain more than one copy of this region.; GO: 0005737 cytoplasm, 0016020 membrane
Probab=87.83 E-value=2.7 Score=39.71 Aligned_cols=88 Identities=18% Similarity=0.273 Sum_probs=40.8
Q ss_pred HHHHHhcCCCC----CCcchhhHHhhhhhhhhhhhhhHhhhhh---HHHhhhhhHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 018386 115 WFDLLRQKPKD----GEPKSIEVSAFLDERAFLWNQYKVMEND---LTSKINSKRAEVDRANERIEKLLASTEQLQLSNN 187 (357)
Q Consensus 115 ~~~~L~~~lke----~SeKdkEVsALlaEKdFVWNQ~k~ME~D---yt~lLK~K~~EvaQAtE~iqKL~q~~EeLQ~~nq 187 (357)
+|..|++.|++ .+.|+.||-+|-+--.=.=++++..|.. ..+.+..|..|........+......+.|.-...
T Consensus 11 EIsLLKqQLke~q~E~~~K~~Eiv~Lr~ql~e~~~~l~~~~~~~~~l~~~~~~K~~ELE~ce~ELqr~~~Ea~lLrekl~ 90 (202)
T PF06818_consen 11 EISLLKQQLKESQAEVNQKDSEIVSLRAQLRELRAELRNKESQIQELQDSLRTKQLELEVCENELQRKKNEAELLREKLG 90 (202)
T ss_pred hHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhHhHHHhHHHHHHHhCHHHHhhhhhh
Confidence 35556666665 3567777776654322222233333322 1233444444444444444444444444443344
Q ss_pred hhhhHHHHHHHHHHh
Q 018386 188 EKDETIAKLKTQIAQ 202 (357)
Q Consensus 188 eKDdeI~RLqak~ae 202 (357)
.-+.+|..|+..++.
T Consensus 91 ~le~El~~Lr~~l~~ 105 (202)
T PF06818_consen 91 QLEAELAELREELAC 105 (202)
T ss_pred hhHHHHHHHHHHHHh
Confidence 444555555555544
No 50
>PRK09039 hypothetical protein; Validated
Probab=87.76 E-value=11 Score=37.34 Aligned_cols=66 Identities=18% Similarity=0.274 Sum_probs=51.4
Q ss_pred HHhhhhhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHhhhhcccchhhHHHHHHHHHHHHHhh
Q 018386 155 TSKINSKRAEVDRANERIEKLLASTEQLQLSNNEKDETIAKLKTQIAQMETGSKKWNTEISRLTQELELLRKS 227 (357)
Q Consensus 155 t~lLK~K~~EvaQAtE~iqKL~q~~EeLQ~~nqeKDdeI~RLqak~aeMe~~~Kkk~eeIs~L~~eLe~lrk~ 227 (357)
...|..-+.+...++-.++.|.+.++.|... |..|++.+...+...++.+..|..|..+|+.+...
T Consensus 122 ~~~L~~~k~~~se~~~~V~~L~~qI~aLr~Q-------la~le~~L~~ae~~~~~~~~~i~~L~~~L~~a~~~ 187 (343)
T PRK09039 122 AQELDSEKQVSARALAQVELLNQQIAALRRQ-------LAALEAALDASEKRDRESQAKIADLGRRLNVALAQ 187 (343)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566677777778888888888888888744 88888888888887788888888888888877533
No 51
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=87.56 E-value=59 Score=37.29 Aligned_cols=117 Identities=21% Similarity=0.203 Sum_probs=65.9
Q ss_pred HHHHhcCCCCCCcchhhHHhhhhhhhhhhhhhH---------hhhhhHHHhhhhhHHHHHH--------HHH--------
Q 018386 116 FDLLRQKPKDGEPKSIEVSAFLDERAFLWNQYK---------VMENDLTSKINSKRAEVDR--------ANE-------- 170 (357)
Q Consensus 116 ~~~L~~~lke~SeKdkEVsALlaEKdFVWNQ~k---------~ME~Dyt~lLK~K~~EvaQ--------AtE-------- 170 (357)
++.|.-....-.++..+...+++|.+=.=||+- ..++|-..++..+..+--| -+-
T Consensus 168 ~~~L~nk~~~lt~~~~q~~tkl~e~~~en~~le~k~~k~~e~~~~nD~~sle~~~~q~~tq~vl~ev~QLss~~q~ltp~ 247 (1265)
T KOG0976|consen 168 GEDLHDKNEELNEFNMEFQTKLAEANREKKALEEKLEKFKEDLIEKDQKSLELHKDQENTQKVLKEVMQLSSQKQTLTPL 247 (1265)
T ss_pred HHHHhhhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhH
Confidence 334444333345666666666666655544432 2345555555444433222 111
Q ss_pred --HHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHhhhhcccchhhHHHHHHHHHHHHHhhcCCCC
Q 018386 171 --RIEKLLASTEQLQLSNNEKDETIAKLKTQIAQMETGSKKWNTEISRLTQELELLRKSRTASD 232 (357)
Q Consensus 171 --~iqKL~q~~EeLQ~~nqeKDdeI~RLqak~aeMe~~~Kkk~eeIs~L~~eLe~lrk~r~a~~ 232 (357)
....+..-..-||.+|.+=.+....|+++-.-++-..-.+.+..-.|..+|+-++.+|++.+
T Consensus 248 rk~~s~i~E~d~~lq~sak~ieE~m~qlk~kns~L~~ElSqkeelVk~~qeeLd~lkqt~t~a~ 311 (1265)
T KOG0976|consen 248 RKTCSMIEEQDMDLQASAKEIEEKMRQLKAKNSVLGDELSQKEELVKELQEELDTLKQTRTRAD 311 (1265)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 11233344455667777666666777777665565556666667777888999999988644
No 52
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=87.39 E-value=49 Score=36.22 Aligned_cols=33 Identities=21% Similarity=0.307 Sum_probs=17.3
Q ss_pred hhcccchhhHHHHHHHHHHHHHhhcCCCCccccccccc
Q 018386 204 ETGSKKWNTEISRLTQELELLRKSRTASDTPVLNRCTR 241 (357)
Q Consensus 204 e~~~Kkk~eeIs~L~~eLe~lrk~r~a~~tpvl~~ct~ 241 (357)
+....++|.||..|...+..+- .|-|-.+-|..
T Consensus 635 ~~~~~~~d~ei~~lk~ki~~~~-----av~p~~~~~~~ 667 (697)
T PF09726_consen 635 QGQLRKKDKEIEELKAKIAQLL-----AVMPSDSYCSA 667 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-----hcCCccccccC
Confidence 3444455555555555554432 16666666644
No 53
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=87.06 E-value=51 Score=38.23 Aligned_cols=119 Identities=22% Similarity=0.269 Sum_probs=58.3
Q ss_pred HHHHHHHHHHHHhcCCCCC----CcchhhHHhhhhhhhhh----------hhhhHhhhhhHHHhhhhhHHHHHHHHHHHH
Q 018386 108 QLADFMAWFDLLRQKPKDG----EPKSIEVSAFLDERAFL----------WNQYKVMENDLTSKINSKRAEVDRANERIE 173 (357)
Q Consensus 108 eL~DFka~~~~L~~~lke~----SeKdkEVsALlaEKdFV----------WNQ~k~ME~Dyt~lLK~K~~EvaQAtE~iq 173 (357)
.|.|....|..+++...+. .++.-|+..|+.|-.-+ |-|+..==.+|..-+-.-++.+..+...-.
T Consensus 788 rlkdl~keik~~k~~~e~~~~~~ek~~~e~e~l~lE~e~l~~e~~~~k~~l~~~~~~~~~l~~e~~~l~~kv~~~~~~~~ 867 (1174)
T KOG0933|consen 788 RLKDLEKEIKTAKQRAEESSKELEKRENEYERLQLEHEELEKEISSLKQQLEQLEKQISSLKSELGNLEAKVDKVEKDVK 867 (1174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHH
Confidence 4677777777777765553 35555666666655544 333222222333333333333333333334
Q ss_pred HHHHHHHHHhhhhhhhhhHHHHHH-------HHHHhhhhcccchhhHHHHHHHHHHHHHh
Q 018386 174 KLLASTEQLQLSNNEKDETIAKLK-------TQIAQMETGSKKWNTEISRLTQELELLRK 226 (357)
Q Consensus 174 KL~q~~EeLQ~~nqeKDdeI~RLq-------ak~aeMe~~~Kkk~eeIs~L~~eLe~lrk 226 (357)
++++.+.....---.=|.+|+.+- .+...|+...+++..|+.+++.+=..+|+
T Consensus 868 ~~~~el~~~k~k~~~~dt~i~~~~~~~e~~~~e~~~~~l~~kkle~e~~~~~~e~~~~~k 927 (1174)
T KOG0933|consen 868 KAQAELKDQKAKQRDIDTEISGLLTSQEKCLSEKSDGELERKKLEHEVTKLESEKANARK 927 (1174)
T ss_pred HHHHHHHHHHHHHHhhhHHHhhhhhHHHHHHHHhhcccchHHHHHhHHHHhhhhHHHHHH
Confidence 444444333222222244454432 33445666666666666666666555554
No 54
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]
Probab=87.04 E-value=47 Score=37.88 Aligned_cols=61 Identities=16% Similarity=0.058 Sum_probs=36.3
Q ss_pred HhhhhhHHHhhhhhHHHHHHHHHHHHHHHHHHH-HHhhhhhhhhhHHHHHHHHHHhhhhccc
Q 018386 148 KVMENDLTSKINSKRAEVDRANERIEKLLASTE-QLQLSNNEKDETIAKLKTQIAQMETGSK 208 (357)
Q Consensus 148 k~ME~Dyt~lLK~K~~EvaQAtE~iqKL~q~~E-eLQ~~nqeKDdeI~RLqak~aeMe~~~K 208 (357)
.+|=.+-.+.+++-+.|.+-....+++|+-++. ..|+.|+....--..|..|-.+|..+..
T Consensus 486 ~~K~e~~~~~le~l~~El~~l~~e~~~lq~~~~~~~qs~~~~~~~l~~~l~~KD~~~~~~~~ 547 (980)
T KOG0980|consen 486 ETKTESQAKALESLRQELALLLIELEELQRTLSNLAQSHNNQLAQLEDLLKQKDRLAAELVA 547 (980)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 346666777888888888888888888887733 3355555444333333334334444333
No 55
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=86.98 E-value=1.6 Score=38.16 Aligned_cols=69 Identities=19% Similarity=0.326 Sum_probs=41.8
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHH--HhhhhcccchhhHHHHHHHHHHHHHhhcCCCCcc
Q 018386 165 VDRANERIEKLLASTEQLQLSNNEKDETIAKLKTQI--AQMETGSKKWNTEISRLTQELELLRKSRTASDTP 234 (357)
Q Consensus 165 vaQAtE~iqKL~q~~EeLQ~~nqeKDdeI~RLqak~--aeMe~~~Kkk~eeIs~L~~eLe~lrk~r~a~~tp 234 (357)
...-...|..|+..+.+|+.....-..++..|...+ .+|.........+|..|+..|+.||+. +..+||
T Consensus 74 l~~ld~ei~~L~~el~~l~~~~k~l~~eL~~L~~~~t~~el~~~i~~l~~e~~~l~~kL~~l~~~-~~~vs~ 144 (169)
T PF07106_consen 74 LAELDAEIKELREELAELKKEVKSLEAELASLSSEPTNEELREEIEELEEEIEELEEKLEKLRSG-SKPVSP 144 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CCCCCH
Confidence 333344455555555555554444445555555543 356666667788888888888888883 334665
No 56
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=86.83 E-value=68 Score=37.25 Aligned_cols=209 Identities=16% Similarity=0.094 Sum_probs=104.9
Q ss_pred CcccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhHHHHHHhHHhHHHHHHHHHHHHHh
Q 018386 3 KTTRSQASLERQKRDKILVKMLKSQQEQIETLVKEREILEDHLKMQHEKWVSDVRLYEDHISQMKSEIVAQELIHLLDAA 82 (357)
Q Consensus 3 ~~~~s~~ss~r~~W~riLVkMLr~~q~QvEsL~~ER~~LEa~ik~QhE~W~sdv~~lqdrLsqm~~el~~eE~~~~~EaA 82 (357)
....+|-+.+-.+-..-|-+=+..-+.++-.+..+|.+++.++-...-....-+..-.+.|.+--+.+.+.+....
T Consensus 773 sel~sqLt~ee~e~l~kLn~eI~~l~~kl~~~~~er~~~~~rk~~le~~l~~kL~~r~~~l~~ei~~~~d~~~~~e---- 848 (1200)
T KOG0964|consen 773 SELFSQLTPEELERLSKLNKEINKLSVKLRALREERIDIETRKTALEANLNTKLYKRVNELEQEIGDLNDSSRRSE---- 848 (1200)
T ss_pred HHHHhhcCHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHhhhcccccchhh----
Confidence 3334443333333333355555677777888888888888777555444433333333333332222222333332
Q ss_pred hhhhhhchhhHHHHHHHHHhhhchhHHHHHHHHHHHHhcCCCCC---CcchhhHHhhhhhhhhhhhhhHhhhhhHH--Hh
Q 018386 83 KSDMVVGLKLREASLLKLMLEYTDDQLADFMAWFDLLRQKPKDG---EPKSIEVSAFLDERAFLWNQYKVMENDLT--SK 157 (357)
Q Consensus 83 k~~l~LGlK~RE~~l~k~~lE~teDeL~DFka~~~~L~~~lke~---SeKdkEVsALlaEKdFVWNQ~k~ME~Dyt--~l 157 (357)
|+....|...+..-.|.+.-+|.+++-.++...++.++. -++-+......+ +| -|+=|.||.-.. ..
T Consensus 849 -----l~~~~~el~~~~~~~e~~~~el~~l~~~i~~~~a~~~~~~~~lE~~~~lek~~~--~~-~~~dKe~Ek~~~rk~~ 920 (1200)
T KOG0964|consen 849 -----LELEKSELESEEKRVEAAILELKTLQDSIDKKKAEIKEIKKELEKAKNLEKEKK--DN-INFDKELEKLVRRKHM 920 (1200)
T ss_pred -----hhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--hh-hhhhHHHHHHHHHHHH
Confidence 455555666666666666666665555555554442221 122222222211 12 333355554432 12
Q ss_pred hhhhHHHHHH--------------------HHHHHHHHHHHHHHHh--hhhhhhh----hHHHHHHHHHHhhhhcccchh
Q 018386 158 INSKRAEVDR--------------------ANERIEKLLASTEQLQ--LSNNEKD----ETIAKLKTQIAQMETGSKKWN 211 (357)
Q Consensus 158 LK~K~~EvaQ--------------------AtE~iqKL~q~~EeLQ--~~nqeKD----deI~RLqak~aeMe~~~Kkk~ 211 (357)
|.+|..|--+ ..|=-++|..++++|+ +.+++|. .....-+.+|++=..+.+.-+
T Consensus 921 Ll~KreE~~ekIr~lG~Lp~daf~ky~~~~~~el~kkL~~~neelk~ys~VNKkAldQf~nfseQre~L~~R~eELd~s~ 1000 (1200)
T KOG0964|consen 921 LLKKREECCEKIRELGVLPEDAFEKYQDKKSKELMKKLHRCNEELKGYSNVNKKALDQFVNFSEQRESLKKRQEELDRSK 1000 (1200)
T ss_pred HHHHHHHHHHHHHhcCCCchHHHHHhccCCHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHHHHHHHHHhccch
Confidence 3333333111 1223378899999996 3444443 223333455555555667788
Q ss_pred hHHHHHHHHHHH
Q 018386 212 TEISRLTQELEL 223 (357)
Q Consensus 212 eeIs~L~~eLe~ 223 (357)
+-|+.|-..|+.
T Consensus 1001 ~sI~eLi~vLdq 1012 (1200)
T KOG0964|consen 1001 DSILELITVLDQ 1012 (1200)
T ss_pred hHHHHHHHHHHH
Confidence 899999888865
No 57
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=86.42 E-value=52 Score=35.46 Aligned_cols=60 Identities=15% Similarity=0.305 Sum_probs=40.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHH----------------hhhhcccchhhHHHHHHHH
Q 018386 161 KRAEVDRANERIEKLLASTEQLQLSNNEKDETIAKLKTQIA----------------QMETGSKKWNTEISRLTQE 220 (357)
Q Consensus 161 K~~EvaQAtE~iqKL~q~~EeLQ~~nqeKDdeI~RLqak~a----------------eMe~~~Kkk~eeIs~L~~e 220 (357)
++.|..+=-+.++.+.+.++++....+.|++.+..|++++. ||=.+.+|-+++|.+.-.+
T Consensus 438 ~~~e~~~~~~~ik~~r~~~k~~~~e~~~Kee~~~qL~~e~e~~~k~~~Rs~Yt~RIlEIv~NI~KQk~eI~KIl~D 513 (594)
T PF05667_consen 438 RESESKQKLQEIKELREEIKEIEEEIRQKEELYKQLVKELEKLPKDVNRSAYTRRILEIVKNIRKQKEEIEKILSD 513 (594)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 34455555567778888888888888888888888877755 4445555666666654433
No 58
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=85.27 E-value=64 Score=37.31 Aligned_cols=117 Identities=23% Similarity=0.243 Sum_probs=77.6
Q ss_pred hHHHHHHHHHhhhchhHHHHHHHHHHHHhcCCCC----------CCcch----hhHHhhhhhhhhhhhhh----Hhhhhh
Q 018386 92 LREASLLKLMLEYTDDQLADFMAWFDLLRQKPKD----------GEPKS----IEVSAFLDERAFLWNQY----KVMEND 153 (357)
Q Consensus 92 ~RE~~l~k~~lE~teDeL~DFka~~~~L~~~lke----------~SeKd----kEVsALlaEKdFVWNQ~----k~ME~D 153 (357)
.|..+.++-.++.+|.-+.||+--+|..-..=.+ ..+|= .+|-.|=|=.+ +-.|+ +-+|.|
T Consensus 416 ~r~kE~Lsr~~d~aEs~iadlkEQVDAAlGAE~MV~qLtdknlnlEekVklLeetv~dlEalee-~~EQL~Esn~ele~D 494 (1243)
T KOG0971|consen 416 RRQKERLSRELDQAESTIADLKEQVDAALGAEEMVEQLTDKNLNLEEKVKLLEETVGDLEALEE-MNEQLQESNRELELD 494 (1243)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHhhccCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHH
Confidence 4555666777778888889999888764443111 11221 12222211111 11222 345555
Q ss_pred HHHhhhhhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHhhhhcccchhhHHHHHHHHHHH
Q 018386 154 LTSKINSKRAEVDRANERIEKLLASTEQLQLSNNEKDETIAKLKTQIAQMETGSKKWNTEISRLTQELEL 223 (357)
Q Consensus 154 yt~lLK~K~~EvaQAtE~iqKL~q~~EeLQ~~nqeKDdeI~RLqak~aeMe~~~Kkk~eeIs~L~~eLe~ 223 (357)
+. .|+++|+-++..|++.++..|-...+.|.+|.+...-++ +.++.|..|.++-.+
T Consensus 495 Lr-------eEld~~~g~~kel~~r~~aaqet~yDrdqTI~KfRelva-------~Lqdqlqe~~dq~~S 550 (1243)
T KOG0971|consen 495 LR-------EELDMAKGARKELQKRVEAAQETVYDRDQTIKKFRELVA-------HLQDQLQELTDQQES 550 (1243)
T ss_pred HH-------HHHHHHhhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH-------HHHHHHHHHHhhhhh
Confidence 55 789999999999999999999999999999999998888 667777777775444
No 59
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=84.52 E-value=4.3 Score=39.74 Aligned_cols=60 Identities=18% Similarity=0.236 Sum_probs=47.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHhhhhcccchhhHHHHHHH
Q 018386 160 SKRAEVDRANERIEKLLASTEQLQLSNNEKDETIAKLKTQIAQMETGSKKWNTEISRLTQ 219 (357)
Q Consensus 160 ~K~~EvaQAtE~iqKL~q~~EeLQ~~nqeKDdeI~RLqak~aeMe~~~Kkk~eeIs~L~~ 219 (357)
.=+.++..++..|+.|+..++.+|...++.+.+|.++++++.+.+...+..++.|-....
T Consensus 42 ~~~~~~~~~q~ei~~L~~qi~~~~~k~~~~~~~i~~~~~eik~l~~eI~~~~~~I~~r~~ 101 (265)
T COG3883 42 ELQKEKKNIQNEIESLDNQIEEIQSKIDELQKEIDQSKAEIKKLQKEIAELKENIVERQE 101 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334556778889999999999999999999999999999998766666666666654433
No 60
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=84.52 E-value=34 Score=31.76 Aligned_cols=92 Identities=12% Similarity=0.179 Sum_probs=50.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhHHHHHHhHHhHHHHHHHHHHHHHhhhhhhhchhhHHHHHHHHHhh
Q 018386 24 LKSQQEQIETLVKEREILEDHLKMQHEKWVSDVRLYEDHISQMKSEIVAQELIHLLDAAKSDMVVGLKLREASLLKLMLE 103 (357)
Q Consensus 24 Lr~~q~QvEsL~~ER~~LEa~ik~QhE~W~sdv~~lqdrLsqm~~el~~eE~~~~~EaAk~~l~LGlK~RE~~l~k~~lE 103 (357)
|......+...-..|+.|+.+....-+ ++..++.+|..+.. ..++...+|+.+.. .|..-+.++.-....++
T Consensus 66 L~~~e~~~de~er~~k~lE~r~~~~ee----ri~~lE~~l~ea~~--~~ee~e~k~~E~~r--kl~~~E~~Le~aEeR~e 137 (237)
T PF00261_consen 66 LEEAEKRADESERARKVLENREQSDEE----RIEELEQQLKEAKR--RAEEAERKYEEVER--KLKVLEQELERAEERAE 137 (237)
T ss_dssp HHHHHHHHHHHCHHHHHHHHHHHHHHH----HHHHCHHHHHHHHH--HHHHHHHHHHHCHH--HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHH----HHHHHHHHHHHHHH--HHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHh
Confidence 344444455555555556655544444 66667777776653 44666777774433 33334445555555566
Q ss_pred hchhHHHHHHHHHHHHhcCC
Q 018386 104 YTDDQLADFMAWFDLLRQKP 123 (357)
Q Consensus 104 ~teDeL~DFka~~~~L~~~l 123 (357)
..+.-+.++...|..+...|
T Consensus 138 ~~E~ki~eLE~el~~~~~~l 157 (237)
T PF00261_consen 138 AAESKIKELEEELKSVGNNL 157 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred hhchhHHHHHHHHHHHHHHH
Confidence 66655666655555555444
No 61
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=83.94 E-value=86 Score=35.88 Aligned_cols=47 Identities=17% Similarity=0.290 Sum_probs=31.4
Q ss_pred HHHHhhhhhhhhhHHHHHHHHHHhhhhcccchhhHHHHHHHHHHHHH
Q 018386 179 TEQLQLSNNEKDETIAKLKTQIAQMETGSKKWNTEISRLTQELELLR 225 (357)
Q Consensus 179 ~EeLQ~~nqeKDdeI~RLqak~aeMe~~~Kkk~eeIs~L~~eLe~lr 225 (357)
..+|...--+|+..+.+|++++-+++..+..+.++|.++...|..||
T Consensus 530 ~s~L~aa~~~ke~irq~ikdqldelskE~esk~~eidi~n~qlkelk 576 (1118)
T KOG1029|consen 530 KSELEAARRKKELIRQAIKDQLDELSKETESKLNEIDIFNNQLKELK 576 (1118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHH
Confidence 44555566677777777777777777777777777766655554444
No 62
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=83.89 E-value=87 Score=35.87 Aligned_cols=17 Identities=24% Similarity=0.519 Sum_probs=11.6
Q ss_pred hhhhhhhhHhhhhhHHH
Q 018386 140 RAFLWNQYKVMENDLTS 156 (357)
Q Consensus 140 KdFVWNQ~k~ME~Dyt~ 156 (357)
+.=.++.|..++..|..
T Consensus 415 ~~~~~~~~~~l~~~~~~ 431 (1201)
T PF12128_consen 415 REQIEEEYQALEQELRQ 431 (1201)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 44557777777777764
No 63
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=83.61 E-value=4.7 Score=37.47 Aligned_cols=35 Identities=23% Similarity=0.357 Sum_probs=17.2
Q ss_pred HHHHHHHHhhhhcccchhhHHHHHHHHHHHHHhhc
Q 018386 194 AKLKTQIAQMETGSKKWNTEISRLTQELELLRKSR 228 (357)
Q Consensus 194 ~RLqak~aeMe~~~Kkk~eeIs~L~~eLe~lrk~r 228 (357)
..|+.....++..+.....+|..|+..++.+...+
T Consensus 66 e~L~~~~~~l~~~v~~q~~el~~L~~qi~~~~~~~ 100 (251)
T PF11932_consen 66 ENLEVYNEQLERQVASQEQELASLEQQIEQIEETR 100 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333344445555555555555555555555444
No 64
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=83.53 E-value=62 Score=33.92 Aligned_cols=33 Identities=18% Similarity=0.166 Sum_probs=24.4
Q ss_pred HHHHHHHHHhhhchhHHHHHHHHHHHHhcCCCC
Q 018386 93 REASLLKLMLEYTDDQLADFMAWFDLLRQKPKD 125 (357)
Q Consensus 93 RE~~l~k~~lE~teDeL~DFka~~~~L~~~lke 125 (357)
+...-+...++++......+...++.|.+.|.-
T Consensus 310 k~~~~l~~~l~~~~e~~~~l~~Ei~~l~~sY~l 342 (569)
T PRK04778 310 KNSDTLPDFLEHAKEQNKELKEEIDRVKQSYTL 342 (569)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHcccc
Confidence 334445567777778888899999999888654
No 65
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=83.53 E-value=13 Score=34.37 Aligned_cols=70 Identities=20% Similarity=0.308 Sum_probs=47.7
Q ss_pred HhhhhhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHhhhhcccchhhHHHHHHHHHHHHHhhcCCC
Q 018386 156 SKINSKRAEVDRANERIEKLLASTEQLQLSNNEKDETIAKLKTQIAQMETGSKKWNTEISRLTQELELLRKSRTAS 231 (357)
Q Consensus 156 ~lLK~K~~EvaQAtE~iqKL~q~~EeLQ~~nqeKDdeI~RLqak~aeMe~~~Kkk~eeIs~L~~eLe~lrk~r~a~ 231 (357)
..|+.++.++......+++|.+-+ .++.=.+...|+.++..++.-....+..|+.|+..|+..-++...+
T Consensus 89 ~klk~~~~el~k~~~~l~~L~~L~------~dknL~eReeL~~kL~~~~~~l~~~~~ki~~Lek~leL~~k~~~rq 158 (194)
T PF15619_consen 89 RKLKDKDEELLKTKDELKHLKKLS------EDKNLAEREELQRKLSQLEQKLQEKEKKIQELEKQLELENKSFRRQ 158 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH------HcCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 356666666666666665544332 2333455677777787888888888999999999998887765543
No 66
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=83.04 E-value=48 Score=32.30 Aligned_cols=19 Identities=26% Similarity=0.455 Sum_probs=12.8
Q ss_pred hhHHHHHHHHHHHHHhhcC
Q 018386 211 NTEISRLTQELELLRKSRT 229 (357)
Q Consensus 211 ~eeIs~L~~eLe~lrk~r~ 229 (357)
..||.+|.++++.|-+.-+
T Consensus 275 ~~Ev~~Lk~~~~~Le~~~g 293 (325)
T PF08317_consen 275 RSEVKRLKAKVDALEKLTG 293 (325)
T ss_pred HHHHHHHHHHHHHHHHHHC
Confidence 3567777777777766655
No 67
>PRK04863 mukB cell division protein MukB; Provisional
Probab=82.90 E-value=58 Score=38.66 Aligned_cols=26 Identities=8% Similarity=0.092 Sum_probs=15.8
Q ss_pred hhhHHhhhhhhhhh-----hhhhHhhhhhHH
Q 018386 130 SIEVSAFLDERAFL-----WNQYKVMENDLT 155 (357)
Q Consensus 130 dkEVsALlaEKdFV-----WNQ~k~ME~Dyt 155 (357)
.+....++++.+.| ||.++-...+|.
T Consensus 476 ~~~~~~l~~~~Gkv~~~~a~~~~~~~~~~~~ 506 (1486)
T PRK04863 476 EQAYQLVRKIAGEVSRSEAWDVARELLRRLR 506 (1486)
T ss_pred HHHHHHHHHHcCCcCHHHHHHHHHHHHHHhH
Confidence 34444455555555 888877766664
No 68
>PF09787 Golgin_A5: Golgin subfamily A member 5; InterPro: IPR019177 This entry represents a family of proteins involved in maintaining Golgi structure. They stimulate the formation of Golgi stacks and ribbons, and are involved in intra-Golgi retrograde transport. Two main interactions have been characterised: one with RAB1A that has been activated by GTP-binding and another with isoform CASP of CUTL1 [].
Probab=82.79 E-value=63 Score=33.50 Aligned_cols=91 Identities=18% Similarity=0.107 Sum_probs=46.9
Q ss_pred hhhhHHHHHHhHHhHHHHHHHHHHHHHhhhhhhhchhhHHHHHHHHHhhhchhHHHHHHHHHHHHhcCCCC-CCcchhhH
Q 018386 55 DVRLYEDHISQMKSEIVAQELIHLLDAAKSDMVVGLKLREASLLKLMLEYTDDQLADFMAWFDLLRQKPKD-GEPKSIEV 133 (357)
Q Consensus 55 dv~~lqdrLsqm~~el~~eE~~~~~EaAk~~l~LGlK~RE~~l~k~~lE~teDeL~DFka~~~~L~~~lke-~SeKdkEV 133 (357)
....++.+|.+...++.+.+....-+ .-.++...++.+..-.-.-.+++|++-+.-||..+..++.. .+.=.--+
T Consensus 289 e~~~l~~Qi~~l~~e~~d~e~~~~~~----~~~~~~~~~~~~~~~~~~~~~e~e~~l~~~el~~~~ee~~~~~s~~~~k~ 364 (511)
T PF09787_consen 289 EIQLLERQIEQLRAELQDLEAQLEGE----QESFREQPQELSQQLEPELTTEAELRLYYQELYHYREELSRQKSPLQLKL 364 (511)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhH----HHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHhcChHHHHH
Confidence 44455555555554444444322222 22233333333332222222378999999999999887544 23222222
Q ss_pred HhhhhhhhhhhhhhHh
Q 018386 134 SAFLDERAFLWNQYKV 149 (357)
Q Consensus 134 sALlaEKdFVWNQ~k~ 149 (357)
..-..|+.++|||+..
T Consensus 365 ~~ke~E~q~lr~~l~~ 380 (511)
T PF09787_consen 365 KEKESEIQKLRNQLSA 380 (511)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 2224577788888765
No 69
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=82.58 E-value=82 Score=34.63 Aligned_cols=66 Identities=17% Similarity=0.279 Sum_probs=34.5
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHhhhhcccchhhHHHHHHHHHHHHHh
Q 018386 158 INSKRAEVDRANERIEKLLASTEQLQLSNNEKDETIAKLKTQIAQMETGSKKWNTEISRLTQELELLRK 226 (357)
Q Consensus 158 LK~K~~EvaQAtE~iqKL~q~~EeLQ~~nqeKDdeI~RLqak~aeMe~~~Kkk~eeIs~L~~eLe~lrk 226 (357)
|+.-..-++|++.+.++....++ -|...+++-..+.. .+...+....++-.++|..+-.++..+++
T Consensus 648 l~~l~~si~~lk~k~~~Q~~~i~-~~~~~~~~s~~L~~--~Q~~~I~~iL~~~~~~I~~~v~~ik~i~~ 713 (717)
T PF10168_consen 648 LQDLKASIEQLKKKLDYQQRQIE-SQKSPKKKSIVLSE--SQKRTIKEILKQQGEEIDELVKQIKNIKK 713 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh-ccccccCCCccCCH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445666677666666554444 33333333222222 22222333344556778888777777765
No 70
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....
Probab=82.55 E-value=6.3 Score=29.65 Aligned_cols=55 Identities=18% Similarity=0.352 Sum_probs=45.1
Q ss_pred HHHHHHHHHHHhhhhhhhhhHHHHHHHHHHhhhhcccchhhHHHHHHHHHHHHHh
Q 018386 172 IEKLLASTEQLQLSNNEKDETIAKLKTQIAQMETGSKKWNTEISRLTQELELLRK 226 (357)
Q Consensus 172 iqKL~q~~EeLQ~~nqeKDdeI~RLqak~aeMe~~~Kkk~eeIs~L~~eLe~lrk 226 (357)
..+..+|-......-+.|-..|..|+.++..++........++..|..+++.|+.
T Consensus 7 ~~rr~rNR~AAr~~R~RKk~~~~~Le~~~~~L~~en~~L~~~~~~L~~~~~~L~~ 61 (64)
T PF00170_consen 7 ERRRERNREAARRSRQRKKQYIEELEEKVEELESENEELKKELEQLKKEIQSLKS 61 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3456666666777888888999999999998888888888899999988888864
No 71
>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein. This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.
Probab=82.20 E-value=59 Score=32.73 Aligned_cols=25 Identities=12% Similarity=0.218 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Q 018386 23 MLKSQQEQIETLVKEREILEDHLKM 47 (357)
Q Consensus 23 MLr~~q~QvEsL~~ER~~LEa~ik~ 47 (357)
=+...++|+..|.+.+.+|.++++-
T Consensus 98 ~~~~~~~~~~~~~~~~~rL~a~~~~ 122 (457)
T TIGR01000 98 QKQLLEQQLDNLKDQKKSLDTLKQS 122 (457)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456667777788888888877754
No 72
>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]
Probab=82.19 E-value=95 Score=36.20 Aligned_cols=112 Identities=16% Similarity=0.129 Sum_probs=62.7
Q ss_pred CcccccchhhHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhHHHHHHhHHhHHHHHHHHHH
Q 018386 3 KTTRSQASLERQKRDKILVKMLKSQ----QEQIETLVKEREILEDHLKMQHEKWVSDVRLYEDHISQMKSEIVAQELIHL 78 (357)
Q Consensus 3 ~~~~s~~ss~r~~W~riLVkMLr~~----q~QvEsL~~ER~~LEa~ik~QhE~W~sdv~~lqdrLsqm~~el~~eE~~~~ 78 (357)
.+.-|+++++.. |+.=-|.-|..+ ..|+..|.. |.--.+.+..+-.+.-.+....+..+.++...+...+..-.
T Consensus 637 sGlmsGG~s~~~-wdek~~~~L~~~k~rl~eel~ei~~-~~~e~~~v~~~i~~le~~~~~~~~~~~~~k~~l~~~~~El~ 714 (1141)
T KOG0018|consen 637 SGLMSGGSSGAK-WDEKEVDQLKEKKERLLEELKEIQK-RRKEVSSVESKIHGLEMRLKYSKLDLEQLKRSLEQNELELQ 714 (1141)
T ss_pred cceecCCccCCC-cCHHHHHHHHHHHHHHHHHHHHHHH-hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346678899955 998844444433 456677777 44455566777777777777777777777654444443222
Q ss_pred HHHhhhhhhhchhhHHHHHHHHHhhhchhHHHHHHHHHHHHh
Q 018386 79 LDAAKSDMVVGLKLREASLLKLMLEYTDDQLADFMAWFDLLR 120 (357)
Q Consensus 79 ~EaAk~~l~LGlK~RE~~l~k~~lE~teDeL~DFka~~~~L~ 120 (357)
.-.+..+ ...-++++|+..++..+..+.+++.....+.
T Consensus 715 ~~~~~i~----~~~p~i~~i~r~l~~~e~~~~~L~~~~n~ve 752 (1141)
T KOG0018|consen 715 RTESEID----EFGPEISEIKRKLQNREGEMKELEERMNKVE 752 (1141)
T ss_pred HHHHHHH----hhCchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2222222 2223444555566555544444444444443
No 73
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=82.11 E-value=1.1e+02 Score=35.66 Aligned_cols=32 Identities=25% Similarity=0.264 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhh
Q 018386 22 KMLKSQQEQIETLVKEREILEDHLKMQHEKWV 53 (357)
Q Consensus 22 kMLr~~q~QvEsL~~ER~~LEa~ik~QhE~W~ 53 (357)
..|....+.+..+..+=+-|+.+|+--.+.|.
T Consensus 221 ~~~~~~~~~i~~~~e~i~~l~k~i~e~~e~~~ 252 (1074)
T KOG0250|consen 221 ESLDHAKELIDLKEEEIKNLKKKIKEEEEKLD 252 (1074)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Confidence 44566677777777777777777766666554
No 74
>PF10212 TTKRSYEDQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019348 This entry represents a C-terminal 500 residue region, which contains a conserved TTKRSYEDQ motif. It is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain an N-terminal domain with a KLRAQ motif (IPR019343 from INTERPRO). The function of these proteins is not known.
Probab=81.97 E-value=37 Score=36.35 Aligned_cols=99 Identities=20% Similarity=0.312 Sum_probs=56.9
Q ss_pred HHHHHHHHHHhcCCCCCCcchhhHHhhhhhhhhhhhhhHhhhhhHHHhhhhhHHHHHHHHHHHHHHHHHHHHHhhhhhhh
Q 018386 110 ADFMAWFDLLRQKPKDGEPKSIEVSAFLDERAFLWNQYKVMENDLTSKINSKRAEVDRANERIEKLLASTEQLQLSNNEK 189 (357)
Q Consensus 110 ~DFka~~~~L~~~lke~SeKdkEVsALlaEKdFVWNQ~k~ME~Dyt~lLK~K~~EvaQAtE~iqKL~q~~EeLQ~~nqeK 189 (357)
..|...|..|...+... +.-.-.+-+|-.-+-+++...|++- +....|...|+..+..|+ ++|...--.+
T Consensus 416 ~~Y~~RI~eLt~qlQ~a---dSKa~~f~~Ec~aL~~rL~~aE~ek----~~l~eeL~~a~~~i~~Lq---DEL~TTr~NY 485 (518)
T PF10212_consen 416 SYYMSRIEELTSQLQHA---DSKAVHFYAECRALQKRLESAEKEK----ESLEEELKEANQNISRLQ---DELETTRRNY 485 (518)
T ss_pred HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHH---HHHHHHHhhH
Confidence 56677777666654321 1112223334444455666666533 345566777776666665 5666666677
Q ss_pred hhHHHHHHHHHHhhhhcccchhhHHHHHH
Q 018386 190 DETIAKLKTQIAQMETGSKKWNTEISRLT 218 (357)
Q Consensus 190 DdeI~RLqak~aeMe~~~Kkk~eeIs~L~ 218 (357)
.+.|+-+=.-++.|-....+-.+||..|.
T Consensus 486 E~QLs~MSEHLasmNeqL~~Q~eeI~~LK 514 (518)
T PF10212_consen 486 EEQLSMMSEHLASMNEQLAKQREEIQTLK 514 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 88888888888866544445555555544
No 75
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=81.86 E-value=84 Score=34.25 Aligned_cols=176 Identities=22% Similarity=0.230 Sum_probs=82.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhHHHHHHhHHhHHHHHHHHHHHHHhhhhhhhchhhHHHHHHHHHhhhch
Q 018386 27 QQEQIETLVKEREILEDHLKMQHEKWVSDVRLYEDHISQMKSEIVAQELIHLLDAAKSDMVVGLKLREASLLKLMLEYTD 106 (357)
Q Consensus 27 ~q~QvEsL~~ER~~LEa~ik~QhE~W~sdv~~lqdrLsqm~~el~~eE~~~~~EaAk~~l~LGlK~RE~~l~k~~lE~te 106 (357)
...+.|.|-++++.|-.-|.-| .+-.+||+ +|+. .-+++.+-+.-++.++ -.=..++--.++.++..-
T Consensus 306 kEeE~e~lq~~~d~Lk~~Ie~Q-~iS~~dve-------~mn~--Er~~l~r~l~~i~~~~--d~l~k~vw~~~l~~~~~f 373 (581)
T KOG0995|consen 306 KEEEIEKLQKENDELKKQIELQ-GISGEDVE-------RMNL--ERNKLKRELNKIQSEL--DRLSKEVWELKLEIEDFF 373 (581)
T ss_pred HHHHHHHHHHHHHHHHHHHHhc-CCCHHHHH-------HHHH--HHHHHHHHHHHHHHHH--HHHHHHHHhHHHHHHHHH
Confidence 3456677888888887777666 44444444 3443 1233444443222221 111122222222222222
Q ss_pred hH----HHHHHHHHHHHhcCCCCCCcchhhHHhhhhhhh--hhhhhhHhhhhhHHH--------hhhhhHHHHHHHHHHH
Q 018386 107 DQ----LADFMAWFDLLRQKPKDGEPKSIEVSAFLDERA--FLWNQYKVMENDLTS--------KINSKRAEVDRANERI 172 (357)
Q Consensus 107 De----L~DFka~~~~L~~~lke~SeKdkEVsALlaEKd--FVWNQ~k~ME~Dyt~--------lLK~K~~EvaQAtE~i 172 (357)
++ +.||...++.|.-- ++..-+| |.-++...|.-||.+ ++....-+..+|...-
T Consensus 374 ~~le~~~~~~~~l~~~i~l~------------~~~~~~n~~~~pe~~~~~~~d~k~~V~~~l~el~~ei~~~~~~~~~~~ 441 (581)
T KOG0995|consen 374 KELEKKFIDLNSLIRRIKLG------------IAENSKNLERNPERAATNGVDLKSYVKPLLKELLDEISEELHEAENEL 441 (581)
T ss_pred HHHHHHHHHHHHHHHHHHHH------------HHHHhccCCcCCccCccccccchhHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 33 45566666555432 1111111 333344444444433 2334444555555555
Q ss_pred HHHHHHHHHHhhhhhhhhhHHHHHHHHHHh-----------hhhcccchhhHHHHHHHHHHHHHh
Q 018386 173 EKLLASTEQLQLSNNEKDETIAKLKTQIAQ-----------METGSKKWNTEISRLTQELELLRK 226 (357)
Q Consensus 173 qKL~q~~EeLQ~~nqeKDdeI~RLqak~ae-----------Me~~~Kkk~eeIs~L~~eLe~lrk 226 (357)
-.|+....++-+...++-...+.++.++.+ -+-+.++-+.||..|+.+|..+.-
T Consensus 442 ~tLq~~~~~~~~~i~E~~~~l~~~~~el~~~~~~~~~~k~e~eee~~k~~~E~e~le~~l~~l~l 506 (581)
T KOG0995|consen 442 ETLQEHFSNKASTIEEKIQILGEIELELKKAESKYELKKEEAEEEWKKCRKEIEKLEEELLNLKL 506 (581)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555555555555555554444444444432 223344556677777777766543
No 76
>cd07658 F-BAR_NOSTRIN The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Nitric Oxide Synthase TRaffic INducer (NOSTRIN). F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Nitric Oxide Synthase TRaffic INducer (NOSTRIN) is expressed in endothelial and epithelial cells and is involved in the regulation, trafficking and targeting of endothelial NOS (eNOS). NOSTRIN facilitates the endocytosis of eNOS by coordinating the functions of dynamin and the Wiskott-Aldrich syndrome protein (WASP). Increased expression of NOSTRIN may be correlated to preeclampsia. NOSTRIN contains an N-terminal F-BAR domain and a C-terminal SH3 domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules. The F-BAR domain of NOSTRIN is necessary and sufficient fo
Probab=81.20 E-value=48 Score=31.05 Aligned_cols=51 Identities=22% Similarity=0.109 Sum_probs=44.0
Q ss_pred hHHHHHHHHHHhhhhcccchhhHHHHHHHHHHHHHhhcCCCCccccccccc
Q 018386 191 ETIAKLKTQIAQMETGSKKWNTEISRLTQELELLRKSRTASDTPVLNRCTR 241 (357)
Q Consensus 191 deI~RLqak~aeMe~~~Kkk~eeIs~L~~eLe~lrk~r~a~~tpvl~~ct~ 241 (357)
.++.+|.+++..-+..+.+|+.+....-..|+.++..+-...+-+++.|-.
T Consensus 171 k~~~Kl~~k~~ka~~~~~k~e~~y~~~~~~l~~~~~~~~~~~~~~~~~~Q~ 221 (239)
T cd07658 171 KEDEKLEAKRKKGEESRLKAENEYYTCCVRLERLRLEWESALRKGLNQYES 221 (239)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 558889999988888889999999999999999999888777778877754
No 77
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=80.97 E-value=10 Score=40.80 Aligned_cols=27 Identities=26% Similarity=0.428 Sum_probs=13.6
Q ss_pred hhhhcccchhhHHHHHHHHHHHHHhhc
Q 018386 202 QMETGSKKWNTEISRLTQELELLRKSR 228 (357)
Q Consensus 202 eMe~~~Kkk~eeIs~L~~eLe~lrk~r 228 (357)
.|-.+..+.+.++.++.-+++.+++.=
T Consensus 336 ~mn~Er~~l~r~l~~i~~~~d~l~k~v 362 (581)
T KOG0995|consen 336 RMNLERNKLKRELNKIQSELDRLSKEV 362 (581)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444455555555555555555543
No 78
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=80.43 E-value=1e+02 Score=34.29 Aligned_cols=72 Identities=21% Similarity=0.315 Sum_probs=35.5
Q ss_pred HHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHhhhhcccch-------hhHHHHHHHHHHHHHhhc--CCCCcc--cccc
Q 018386 170 ERIEKLLASTEQLQLSNNEKDETIAKLKTQIAQMETGSKKW-------NTEISRLTQELELLRKSR--TASDTP--VLNR 238 (357)
Q Consensus 170 E~iqKL~q~~EeLQ~~nqeKDdeI~RLqak~aeMe~~~Kkk-------~eeIs~L~~eLe~lrk~r--~a~~tp--vl~~ 238 (357)
..++.|...+..++.......+.|..|++++..|...+.+. .+|+..++++|-.|-..= ....|| ||-.
T Consensus 398 ~e~q~L~ekl~~lek~~re~qeri~~LE~ELr~l~~~A~E~q~~LnsAQDELvtfSEeLAqLYHHVC~cNgeTPnRVmLD 477 (717)
T PF09730_consen 398 SEVQNLKEKLMSLEKSSREDQERISELEKELRALSKLAGESQGSLNSAQDELVTFSEELAQLYHHVCMCNGETPNRVMLD 477 (717)
T ss_pred HHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCccHHHH
Confidence 34455555555554444444556666666665555555443 344445566665543321 112666 5444
Q ss_pred ccc
Q 018386 239 CTR 241 (357)
Q Consensus 239 ct~ 241 (357)
+.+
T Consensus 478 ~yr 480 (717)
T PF09730_consen 478 YYR 480 (717)
T ss_pred HHH
Confidence 444
No 79
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=79.98 E-value=15 Score=31.54 Aligned_cols=84 Identities=23% Similarity=0.317 Sum_probs=50.1
Q ss_pred HhhhhhhhhhhhhhHhhhhhHHHhhhhhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHH----hhhhcccc
Q 018386 134 SAFLDERAFLWNQYKVMENDLTSKINSKRAEVDRANERIEKLLASTEQLQLSNNEKDETIAKLKTQIA----QMETGSKK 209 (357)
Q Consensus 134 sALlaEKdFVWNQ~k~ME~Dyt~lLK~K~~EvaQAtE~iqKL~q~~EeLQ~~nqeKDdeI~RLqak~a----eMe~~~Kk 209 (357)
..|.++....=+.+.-++. .+...+-+++.+.+....|...+..++.....=-+++.|++.-+. ....+.++
T Consensus 62 ~~l~~d~~~l~~~~~rL~~----~~~~~ere~~~~~~~~~~l~~~~~~~~~~~k~~kee~~klk~~~~~~~tq~~~e~rk 137 (151)
T PF11559_consen 62 RRLRSDIERLQNDVERLKE----QLEELERELASAEEKERQLQKQLKSLEAKLKQEKEELQKLKNQLQQRKTQYEHELRK 137 (151)
T ss_pred HHHHhHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444442 344555566666666677777777776555555557777765543 56667777
Q ss_pred hhhHHHHHHHHH
Q 018386 210 WNTEISRLTQEL 221 (357)
Q Consensus 210 k~eeIs~L~~eL 221 (357)
++-||.+|..-|
T Consensus 138 ke~E~~kLk~rL 149 (151)
T PF11559_consen 138 KEREIEKLKERL 149 (151)
T ss_pred HHHHHHHHHHHh
Confidence 777777777655
No 80
>PF09403 FadA: Adhesion protein FadA; InterPro: IPR018543 FadA (Fusobacterium adhesin A) is an adhesin which forms two alpha helices. ; PDB: 3ETZ_B 3ETY_A 2GL2_B 3ETX_C 3ETW_A.
Probab=79.77 E-value=23 Score=31.24 Aligned_cols=80 Identities=19% Similarity=0.225 Sum_probs=50.8
Q ss_pred hhhhhHhhhhhHHHhhhhhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHH-------------HHhhhhcccc
Q 018386 143 LWNQYKVMENDLTSKINSKRAEVDRANERIEKLLASTEQLQLSNNEKDETIAKLKTQ-------------IAQMETGSKK 209 (357)
Q Consensus 143 VWNQ~k~ME~Dyt~lLK~K~~EvaQAtE~iqKL~q~~EeLQ~~nqeKDdeI~RLqak-------------~aeMe~~~Kk 209 (357)
|-++|+.+|+.|-.+.+.-+..-.+=...++.+.+++.++...-+..++.|.+|.+. +.+-....++
T Consensus 25 v~~~l~~LEae~q~L~~kE~~r~~~~k~~ae~a~~~L~~~~~~~~~i~e~~~kl~~~~~~r~yk~eYk~llk~y~~~~~~ 104 (126)
T PF09403_consen 25 VESELNQLEAEYQQLEQKEEARYNEEKQEAEAAEAELAELKELYAEIEEKIEKLKQDSKVRWYKDEYKELLKKYKDLLNK 104 (126)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGSTTHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHH
Confidence 567899999999977765433333333344566667777766666777777777554 4455555666
Q ss_pred hhhHHHHHHHHHH
Q 018386 210 WNTEISRLTQELE 222 (357)
Q Consensus 210 k~eeIs~L~~eLe 222 (357)
.+.+|...+..+.
T Consensus 105 L~k~I~~~e~iI~ 117 (126)
T PF09403_consen 105 LDKEIAEQEQIID 117 (126)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 6666666665443
No 81
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=79.66 E-value=1.2e+02 Score=34.74 Aligned_cols=30 Identities=10% Similarity=0.119 Sum_probs=16.1
Q ss_pred hhhHHhhhhhhhhhhhhhHhhhhhHHHhhh
Q 018386 130 SIEVSAFLDERAFLWNQYKVMENDLTSKIN 159 (357)
Q Consensus 130 dkEVsALlaEKdFVWNQ~k~ME~Dyt~lLK 159 (357)
..++..|..+.+.+=.++.-+|.-|..++.
T Consensus 358 ~~~~~~l~~~~~~Lt~~~~di~~ky~~~~~ 387 (1201)
T PF12128_consen 358 RNELENLQEQLDLLTSKHQDIESKYNKLKQ 387 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555555555555555555554433
No 82
>KOG1899 consensus LAR transmembrane tyrosine phosphatase-interacting protein liprin [General function prediction only]
Probab=78.57 E-value=1.2e+02 Score=34.06 Aligned_cols=61 Identities=16% Similarity=0.261 Sum_probs=38.7
Q ss_pred HHHhhhhhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHH-hhhhcccchhhHHHHHHHHHHHHHhhc
Q 018386 154 LTSKINSKRAEVDRANERIEKLLASTEQLQLSNNEKDETIAKLKTQIA-QMETGSKKWNTEISRLTQELELLRKSR 228 (357)
Q Consensus 154 yt~lLK~K~~EvaQAtE~iqKL~q~~EeLQ~~nqeKDdeI~RLqak~a-eMe~~~Kkk~eeIs~L~~eLe~lrk~r 228 (357)
|--+||+-+.|+++- +....+|+++|-||..++. .|-.+-..+-+++.+|...||.+-..+
T Consensus 229 ye~klkstk~e~a~L--------------~Eq~~eK~~e~~rl~~~lv~~~~~d~e~~~~rd~~lk~a~eslm~an 290 (861)
T KOG1899|consen 229 YETKLKSTKGEMAPL--------------REQRSEKNDEEMRLLRTLVQRLMADGEHKSLRDNTLKNALESLMRAN 290 (861)
T ss_pred HHhhcccccchhhhH--------------HHHHhhhhhHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHhhc
Confidence 444677766666654 3345577888888877754 455555566666667777666665555
No 83
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=78.44 E-value=25 Score=30.83 Aligned_cols=27 Identities=26% Similarity=0.361 Sum_probs=17.5
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHh
Q 018386 157 KINSKRAEVDRANERIEKLLASTEQLQ 183 (357)
Q Consensus 157 lLK~K~~EvaQAtE~iqKL~q~~EeLQ 183 (357)
.++..+.++....+....+.+....|+
T Consensus 124 ~~~~~~~~l~~l~~~~~~~~~e~~~l~ 150 (191)
T PF04156_consen 124 LLKSVEERLDSLDESIKELEKEIRELQ 150 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345556666666666666666666666
No 84
>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp
Probab=78.42 E-value=7.2 Score=39.02 Aligned_cols=55 Identities=35% Similarity=0.491 Sum_probs=43.6
Q ss_pred HHHHHHHHHhhhhhhhhhHHHHHHHHHHhhh--------------hcccchhhHHHHHHHHHHHHHhhcCCCC
Q 018386 174 KLLASTEQLQLSNNEKDETIAKLKTQIAQME--------------TGSKKWNTEISRLTQELELLRKSRTASD 232 (357)
Q Consensus 174 KL~q~~EeLQ~~nqeKDdeI~RLqak~aeMe--------------~~~Kkk~eeIs~L~~eLe~lrk~r~a~~ 232 (357)
||..+.+.| +++|-||..|+.+++-|. .-.|++..||..|.+=+|-||++=.--+
T Consensus 76 kLkes~~~l----~dRetEI~eLksQL~RMrEDWIEEECHRVEAQLALKEARkEIkQLkQvieTmrssL~ekD 144 (305)
T PF15290_consen 76 KLKESENRL----HDRETEIDELKSQLARMREDWIEEECHRVEAQLALKEARKEIKQLKQVIETMRSSLAEKD 144 (305)
T ss_pred HHHHHHHHH----HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhh
Confidence 445555555 479999999999988664 4579999999999999999999876443
No 85
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=78.31 E-value=93 Score=32.64 Aligned_cols=56 Identities=18% Similarity=0.290 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHhhhhcccchhhHHHHHHHHHHHHHh
Q 018386 171 RIEKLLASTEQLQLSNNEKDETIAKLKTQIAQMETGSKKWNTEISRLTQELELLRK 226 (357)
Q Consensus 171 ~iqKL~q~~EeLQ~~nqeKDdeI~RLqak~aeMe~~~Kkk~eeIs~L~~eLe~lrk 226 (357)
.+..|...++.++....++....+.++.++.++....+..+++...+...|+.||+
T Consensus 356 eL~~Le~~~~~~~~~i~~~~~~ysel~e~leel~e~leeie~eq~ei~e~l~~Lrk 411 (569)
T PRK04778 356 QLESLEKQYDEITERIAEQEIAYSELQEELEEILKQLEEIEKEQEKLSEMLQGLRK 411 (569)
T ss_pred HHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444443344444444444444444444444444444444444444444
No 86
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=78.25 E-value=1.1e+02 Score=33.22 Aligned_cols=42 Identities=17% Similarity=0.272 Sum_probs=27.3
Q ss_pred HHHHHHHHHhhhhcccchhhHHHHHHHHHHHHHhhcCCCCcc
Q 018386 193 IAKLKTQIAQMETGSKKWNTEISRLTQELELLRKSRTASDTP 234 (357)
Q Consensus 193 I~RLqak~aeMe~~~Kkk~eeIs~L~~eLe~lrk~r~a~~tp 234 (357)
|.-|++++.++|.-.--...+|..|...|..-+.+-.+.+++
T Consensus 305 i~~Lr~klselE~~n~~L~~~I~dL~~ql~e~~r~~e~~L~~ 346 (546)
T KOG0977|consen 305 ISGLRAKLSELESRNSALEKRIEDLEYQLDEDQRSFEQALND 346 (546)
T ss_pred ccchhhhhccccccChhHHHHHHHHHhhhhhhhhhhhhhhhh
Confidence 334566677777766667777888888776666655544444
No 87
>KOG0979 consensus Structural maintenance of chromosome protein SMC5/Spr18, SMC superfamily [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=78.21 E-value=1.4e+02 Score=34.69 Aligned_cols=19 Identities=26% Similarity=0.386 Sum_probs=8.1
Q ss_pred HHHHHHHHHHHHHHHHHHh
Q 018386 29 EQIETLVKEREILEDHLKM 47 (357)
Q Consensus 29 ~QvEsL~~ER~~LEa~ik~ 47 (357)
..+..|-.+++.|++-+.+
T Consensus 181 ~eL~~lr~~e~~Le~~~~~ 199 (1072)
T KOG0979|consen 181 IELMDLREDEKSLEDKLTT 199 (1072)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444433
No 88
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=77.96 E-value=27 Score=30.03 Aligned_cols=65 Identities=20% Similarity=0.233 Sum_probs=28.7
Q ss_pred HHhhhhhhhhhhhhhHhhhhhHHHhhhhhHHHHHHHHHHHHHHHHHHH----HHhhhhhhhhhHHHHHHHHHH
Q 018386 133 VSAFLDERAFLWNQYKVMENDLTSKINSKRAEVDRANERIEKLLASTE----QLQLSNNEKDETIAKLKTQIA 201 (357)
Q Consensus 133 VsALlaEKdFVWNQ~k~ME~Dyt~lLK~K~~EvaQAtE~iqKL~q~~E----eLQ~~nqeKDdeI~RLqak~a 201 (357)
+..+-++-..+-+..+.++..+..+...- ....+.++++...+. +.....-+|+-+|.+|+..|.
T Consensus 82 ~~~~ere~~~~~~~~~~l~~~~~~~~~~~----k~~kee~~klk~~~~~~~tq~~~e~rkke~E~~kLk~rL~ 150 (151)
T PF11559_consen 82 LEELERELASAEEKERQLQKQLKSLEAKL----KQEKEELQKLKNQLQQRKTQYEHELRKKEREIEKLKERLN 150 (151)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 34444444445555555555444333222 222223333333322 223444556666666666553
No 89
>PF09728 Taxilin: Myosin-like coiled-coil protein; InterPro: IPR019132 Taxilin contains an extraordinarily long coiled-coil domain in its C-terminal half and is ubiquitously expressed. It is a novel binding partner of several syntaxin family members and is possibly involved in Ca(2+)-dependent exocytosis in neuroendocrine cells []. Gamma-taxilin, described as leucine zipper protein Factor Inhibiting ATF4-mediated Transcription (FIAT), localises to the nucleus in osteoblasts and dimerises with ATF4 to form inactive dimers, thus inhibiting ATF4-mediated transcription [].
Probab=77.18 E-value=78 Score=31.17 Aligned_cols=69 Identities=22% Similarity=0.267 Sum_probs=51.0
Q ss_pred HHHHHHHHHHhcCCCCC---CcchhhHHhhhhhh-hhhhhhhHhhhhhHHHhhhhhHHHHHHHHHHHHHHHHH
Q 018386 110 ADFMAWFDLLRQKPKDG---EPKSIEVSAFLDER-AFLWNQYKVMENDLTSKINSKRAEVDRANERIEKLLAS 178 (357)
Q Consensus 110 ~DFka~~~~L~~~lke~---SeKdkEVsALlaEK-dFVWNQ~k~ME~Dyt~lLK~K~~EvaQAtE~iqKL~q~ 178 (357)
+.|++-|..+...+.+. +.+..+--..|++| ..+-.||..=|..|...++.|+.|+.-+..+++.....
T Consensus 110 ~kFq~~L~dIq~~~ee~~~~~~k~~~eN~~L~eKlK~l~eQye~rE~~~~~~~k~keLE~Ql~~AKl~q~~~~ 182 (309)
T PF09728_consen 110 EKFQATLKDIQAQMEEQSERNIKLREENEELREKLKSLIEQYELREEHFEKLLKQKELEVQLAEAKLEQQQEE 182 (309)
T ss_pred HHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence 78888888888887773 35555555566665 45679999999999999999999986665555444433
No 90
>KOG4677 consensus Golgi integral membrane protein [Intracellular trafficking, secretion, and vesicular transport; General function prediction only]
Probab=77.17 E-value=65 Score=34.60 Aligned_cols=167 Identities=17% Similarity=0.125 Sum_probs=101.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH----------HHHhhh--hhhhhhhhhHHHHHHhHHhHHHHHHHHHHHHHhhhhhh
Q 018386 20 LVKMLKSQQEQIETLVKEREILED----------HLKMQH--EKWVSDVRLYEDHISQMKSEIVAQELIHLLDAAKSDMV 87 (357)
Q Consensus 20 LVkMLr~~q~QvEsL~~ER~~LEa----------~ik~Qh--E~W~sdv~~lqdrLsqm~~el~~eE~~~~~EaAk~~l~ 87 (357)
|.++|...++=++++-.+.-++-+ ..++-| ++-.+|..-+|+++-+.+.++.+=|..++-++....-.
T Consensus 277 l~~~l~~keeL~~s~~~e~~i~qs~~kstas~~E~ee~rve~~~s~ed~~~~q~q~~~Lrs~~~d~EAq~r~l~s~~~~q 356 (554)
T KOG4677|consen 277 LFRFLDRKEELALSHYREHLIIQSPDKSTASRKEFEETRVELPFSAEDSAHIQDQYTLLRSQIIDIEAQDRHLESAGQTQ 356 (554)
T ss_pred HHHHhhhHHHHHHHHHHHhhccCCCCcchhHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhHHH
Confidence 445666777766666554322211 112222 34455888899999999988887666666554444444
Q ss_pred hchhhHHHHHHHHHhhhchhHHHHHHHHHHHHhcCCCC--------CCcchhhHHhhhhh-hhhhhhh-hHhhh---hhH
Q 018386 88 VGLKLREASLLKLMLEYTDDQLADFMAWFDLLRQKPKD--------GEPKSIEVSAFLDE-RAFLWNQ-YKVME---NDL 154 (357)
Q Consensus 88 LGlK~RE~~l~k~~lE~teDeL~DFka~~~~L~~~lke--------~SeKdkEVsALlaE-KdFVWNQ-~k~ME---~Dy 154 (357)
+-.+|-+............-.++-|+-.+.+-.+.+.- +.+|+-|+.+|.+- +.=.||- -+-++ +-+
T Consensus 357 ~~~~h~~ka~~~~~~~~l~~~~ec~~~e~e~~~~~~~r~~~~~qski~dk~~el~kl~~~l~~r~~~~s~~~l~~~~~qL 436 (554)
T KOG4677|consen 357 IFRKHPRKASILNMPLVLTLFYECFYHETEAEGTFSSRVNLKKQSKIPDKQYELTKLAARLKLRAWNDSVDALFTTKNQL 436 (554)
T ss_pred HHHhhhHhhhhhhchHHHHHHHHHHHHHHHHhhhhhhhccchhhccCcchHHHHHHHHHHHHHHhhhhhHHHHhchhHHH
Confidence 55555555554444444445667777777766665332 34899999998764 5556765 33333 346
Q ss_pred HHhhhhhHHHHHHHHHHHHHHHHHHHHHhhhh
Q 018386 155 TSKINSKRAEVDRANERIEKLLASTEQLQLSN 186 (357)
Q Consensus 155 t~lLK~K~~EvaQAtE~iqKL~q~~EeLQ~~n 186 (357)
+.+|+.|..-.+.--+--++|..-+|-||-..
T Consensus 437 t~tl~qkq~~le~v~~~~~~ln~~lerLq~~~ 468 (554)
T KOG4677|consen 437 TYTLKQKQIGLERVVEILHKLNAPLERLQEYV 468 (554)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHh
Confidence 77788877777776666666666666666433
No 91
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana.
Probab=77.05 E-value=21 Score=33.01 Aligned_cols=55 Identities=25% Similarity=0.350 Sum_probs=37.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhh-------hhhhhhHHHHHHHHHHhhhhcccchhhHHHHHHHHHHH
Q 018386 162 RAEVDRANERIEKLLASTEQLQLS-------NNEKDETIAKLKTQIAQMETGSKKWNTEISRLTQELEL 223 (357)
Q Consensus 162 ~~EvaQAtE~iqKL~q~~EeLQ~~-------nqeKDdeI~RLqak~aeMe~~~Kkk~eeIs~L~~eLe~ 223 (357)
+++-.+.-+.|.+|.+.+.+||.. .+.+|.+|.||++.+. ..+++|...+.+-+.
T Consensus 123 ~~~~~~~e~~i~~Le~ki~el~~~~~~~~~~ke~~~~ei~~lks~~~-------~l~~~~~~~e~~F~~ 184 (190)
T PF05266_consen 123 EAELKELESEIKELEMKILELQRQAAKLKEKKEAKDKEISRLKSEAE-------ALKEEIENAELEFQS 184 (190)
T ss_pred HHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHH
Confidence 444455577778888888777764 6677888888888776 556666666655544
No 92
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=76.96 E-value=31 Score=37.03 Aligned_cols=40 Identities=28% Similarity=0.379 Sum_probs=34.0
Q ss_pred hhhhHHHHHHHHHHhhhhcccchhhHHHHHHHHHHHHHhh
Q 018386 188 EKDETIAKLKTQIAQMETGSKKWNTEISRLTQELELLRKS 227 (357)
Q Consensus 188 eKDdeI~RLqak~aeMe~~~Kkk~eeIs~L~~eLe~lrk~ 227 (357)
.|-++|..++.++.+++.+.+.|++.+++|..+++.|-+.
T Consensus 444 ~~~~~ik~~r~~~k~~~~e~~~Kee~~~qL~~e~e~~~k~ 483 (594)
T PF05667_consen 444 QKLQEIKELREEIKEIEEEIRQKEELYKQLVKELEKLPKD 483 (594)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 4556677778888899999999999999999999998664
No 93
>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]
Probab=76.88 E-value=1.2e+02 Score=33.31 Aligned_cols=24 Identities=25% Similarity=0.325 Sum_probs=15.3
Q ss_pred HHhhhhcccchhhHHHHHHHHHHH
Q 018386 200 IAQMETGSKKWNTEISRLTQELEL 223 (357)
Q Consensus 200 ~aeMe~~~Kkk~eeIs~L~~eLe~ 223 (357)
+..++...+.++.+|.+|..+|+.
T Consensus 319 I~~le~~l~~~~~~leel~~kL~~ 342 (629)
T KOG0963|consen 319 ISALEKELKAKISELEELKEKLNS 342 (629)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhh
Confidence 444555556777777777776653
No 94
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=76.80 E-value=32 Score=29.97 Aligned_cols=64 Identities=20% Similarity=0.306 Sum_probs=37.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhhh---hHHHHHHHHHHhhhhcccchhhHHHHHHHHHHHHHhh
Q 018386 164 EVDRANERIEKLLASTEQLQLSNNEKD---ETIAKLKTQIAQMETGSKKWNTEISRLTQELELLRKS 227 (357)
Q Consensus 164 EvaQAtE~iqKL~q~~EeLQ~~nqeKD---deI~RLqak~aeMe~~~Kkk~eeIs~L~~eLe~lrk~ 227 (357)
+-..|++.|-+|...+++++....+-+ .++..|+.+..-+--+.-+|.|++..|..+++-|+.-
T Consensus 45 ~r~~l~~Eiv~l~~~~e~~~~~~~~~~~L~~el~~l~~ry~t~LellGEK~E~veEL~~Dv~DlK~m 111 (120)
T PF12325_consen 45 ERDELREEIVKLMEENEELRALKKEVEELEQELEELQQRYQTLLELLGEKSEEVEELRADVQDLKEM 111 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHH
Confidence 334455555555666666543332221 2334444444444456678888999999888888753
No 95
>PF10211 Ax_dynein_light: Axonemal dynein light chain; InterPro: IPR019347 Axonemal dynein light chain proteins play a dynamic role in flagellar and cilial motility. Eukaryotic cilia and flagella are complex organelles consisting of a core structure, the axoneme, which is composed of nine microtubule doublets forming a cylinder that surrounds a pair of central singlet microtubules. This ultra-structural arrangement seems to be one of the most stable micro-tubular assemblies known and is responsible for the flagellar and ciliary movement of a large number of organisms ranging from protozoan to mammals. This light chain interacts directly with the N-terminal half of the heavy chains [].
Probab=75.76 E-value=29 Score=31.73 Aligned_cols=103 Identities=22% Similarity=0.291 Sum_probs=53.9
Q ss_pred HHHHHHHHhcCCCCCCcchhhHHhhhhhhhh----hhhhhHhhhhhHHHhhhhhHHH----HHHHHHHHHHHHHHHHHHh
Q 018386 112 FMAWFDLLRQKPKDGEPKSIEVSAFLDERAF----LWNQYKVMENDLTSKINSKRAE----VDRANERIEKLLASTEQLQ 183 (357)
Q Consensus 112 Fka~~~~L~~~lke~SeKdkEVsALlaEKdF----VWNQ~k~ME~Dyt~lLK~K~~E----vaQAtE~iqKL~q~~EeLQ 183 (357)
|-.||+.|-- .|+-=-+||+. |||.|..+=.-|..+.++-... ..++......+...+..|.
T Consensus 64 y~~~F~ELIR----------QVTi~C~ERGlLL~rvrde~~~~l~~y~~l~~s~~~f~~rk~l~~e~~~~~l~~~i~~L~ 133 (189)
T PF10211_consen 64 YSQCFDELIR----------QVTIDCPERGLLLLRVRDEYRMTLDAYQTLYESSIAFGMRKALQAEQGKQELEEEIEELE 133 (189)
T ss_pred HHHHHHHHHH----------HHHhCcHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5567766643 23433345554 6999988777787777754332 2222223445555555555
Q ss_pred hhhhhhhhHHHHHHHHHHh--------hhhcccchhhHHHHHHHHHHHH
Q 018386 184 LSNNEKDETIAKLKTQIAQ--------METGSKKWNTEISRLTQELELL 224 (357)
Q Consensus 184 ~~nqeKDdeI~RLqak~ae--------Me~~~Kkk~eeIs~L~~eLe~l 224 (357)
....+-..++..|+.+... +....|+..+||..|...-+.|
T Consensus 134 ~e~~~L~~~~~~l~~~~e~~ek~~~e~~~~~~k~~~~ei~~lk~~~~ql 182 (189)
T PF10211_consen 134 EEKEELEKQVQELKNKCEQLEKREEELRQEEEKKHQEEIDFLKKQNQQL 182 (189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555555555555554432 2333344445555444444433
No 96
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=75.73 E-value=71 Score=31.66 Aligned_cols=63 Identities=24% Similarity=0.331 Sum_probs=34.4
Q ss_pred HHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHhhhhcccc---h-hhHHHHHHHHHHHHHhhcCCCCc
Q 018386 171 RIEKLLASTEQLQLSNNEKDETIAKLKTQIAQMETGSKK---W-NTEISRLTQELELLRKSRTASDT 233 (357)
Q Consensus 171 ~iqKL~q~~EeLQ~~nqeKDdeI~RLqak~aeMe~~~Kk---k-~eeIs~L~~eLe~lrk~r~a~~t 233 (357)
.+..++..++.+...-.+.-+++..++.++++.+....+ | -.||.+|.+.+..|-+.-+-.+|
T Consensus 226 ~l~e~~~~l~~l~~~I~~~~~~k~e~~~~I~~ae~~~~~~r~~t~~Ei~~Lk~~~~~Le~l~g~~~~ 292 (312)
T smart00787 226 KLEELEEELQELESKIEDLTNKKSELNTEIAEAEKKLEQCRGFTFKEIEKLKEQLKLLQSLTGWKIT 292 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhCCeeE
Confidence 344444444444444444445555555555544443322 2 25788888888888877764443
No 97
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=75.33 E-value=1.4e+02 Score=33.04 Aligned_cols=19 Identities=21% Similarity=0.288 Sum_probs=13.6
Q ss_pred hhhhHhhhhhHHHhhhhhH
Q 018386 144 WNQYKVMENDLTSKINSKR 162 (357)
Q Consensus 144 WNQ~k~ME~Dyt~lLK~K~ 162 (357)
||+.+.-+.++.+.+..-+
T Consensus 625 ~~e~~~~~~~l~~~~~~l~ 643 (908)
T COG0419 625 ENELEEAEEELESELEKLN 643 (908)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 7777777777777666654
No 98
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]
Probab=74.16 E-value=1.6e+02 Score=33.37 Aligned_cols=179 Identities=17% Similarity=0.137 Sum_probs=82.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhHHHHHHhHHhHHHHHHHHHHHHHhhhhhhhchhhHHHHHHH
Q 018386 20 LVKMLKSQQEQIETLVKEREILEDHLKMQHEKWVSDVRLYEDHISQMKSEIVAQELIHLLDAAKSDMVVGLKLREASLLK 99 (357)
Q Consensus 20 LVkMLr~~q~QvEsL~~ER~~LEa~ik~QhE~W~sdv~~lqdrLsqm~~el~~eE~~~~~EaAk~~l~LGlK~RE~~l~k 99 (357)
|-.-|..+++|+-++-.....|+..-.-+-...+-+... ..-++ .-.+|+.+|+-+++--+.+-.|+|++---.
T Consensus 358 Ln~~leaReaqll~~e~~ka~lee~~~n~~~e~~~~k~~-~s~~s-----sl~~e~~QRva~lEkKvqa~~kERDalr~e 431 (961)
T KOG4673|consen 358 LNNALEAREAQLLADEIAKAMLEEEQLNSVTEDLKRKSN-ESEVS-----SLREEYHQRVATLEKKVQALTKERDALRRE 431 (961)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhh-ccccc-----chHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 445556677777776666666655332222211111110 01111 123678888888888888888888875221
Q ss_pred HHhhhchhHHHHHHHHHHHHhcCCCC--CCcchhhHHhhhhhhhhhhh-hhHhhhhhHHHhhh--hhHHH--HHHHHHHH
Q 018386 100 LMLEYTDDQLADFMAWFDLLRQKPKD--GEPKSIEVSAFLDERAFLWN-QYKVMENDLTSKIN--SKRAE--VDRANERI 172 (357)
Q Consensus 100 ~~lE~teDeL~DFka~~~~L~~~lke--~SeKdkEVsALlaEKdFVWN-Q~k~ME~Dyt~lLK--~K~~E--vaQAtE~i 172 (357)
.+ .++ ..|+..|.- --+||.-|-+|.+|--=+-- |+. -+....+|+ .|+.| ++.-+|.|
T Consensus 432 ~k---------slk---~ela~~l~~DeLaEkdE~I~~lm~EGEkLSK~ql~--qs~iIkKLRAk~ke~etl~~K~ge~i 497 (961)
T KOG4673|consen 432 QK---------SLK---KELAAALLKDELAEKDEIINQLMAEGEKLSKKQLA--QSAIIKKLRAKIKEAETLEEKKGELI 497 (961)
T ss_pred HH---------HHH---HHHHHhhhhHHHHHHHHHHHHHHHHHHHhHHHHHH--HHHHHHHHHHHhhhhhHHHHHhhhHH
Confidence 11 111 011111100 01344444444433221100 000 001111222 23334 56667777
Q ss_pred HHHHHHHHHHhhhhhhhhhHHHHHHHHHHhhhhcccchhhHHHHHH
Q 018386 173 EKLLASTEQLQLSNNEKDETIAKLKTQIAQMETGSKKWNTEISRLT 218 (357)
Q Consensus 173 qKL~q~~EeLQ~~nqeKDdeI~RLqak~aeMe~~~Kkk~eeIs~L~ 218 (357)
.+|+...+.|.+.-..|.+.=.-++.-+..|.+..+.-++..+.+.
T Consensus 498 ~~L~sE~~~lk~il~~Kee~Ek~~~E~I~k~~ae~~rq~~~~~~sr 543 (961)
T KOG4673|consen 498 TKLQSEENKLKSILRDKEETEKLLQETIEKHQAELTRQKDYYSNSR 543 (961)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHH
Confidence 7777777777665555554333333334455555555565555543
No 99
>cd00632 Prefoldin_beta Prefoldin beta; Prefoldin is a hexameric molecular chaperone complex, composed of two evolutionarily related subunits (alpha and beta), which are found in both eukaryotes and archaea. Prefoldin binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The hexameric structure consists of a double beta barrel assembly with six protruding coiled-coils. The alpha prefoldin subunits have two beta hairpin structures while the beta prefoldin subunits (this CD) have only one hairpin that is most similar to the second hairpin of the alpha subunit. The prefoldin hexamer consists of two alpha and four beta subunits and is assembled from the beta hairpins of all six subunits. The alpha subunits initially dimerize providing a structural nucleus for the assembly of the beta subunits. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the st
Probab=73.86 E-value=26 Score=28.70 Aligned_cols=82 Identities=24% Similarity=0.351 Sum_probs=53.1
Q ss_pred hhhhHhhhhhHHHhhhhhHHHHHHHHHHHHHHHHHHHHHh------------hhhhhhhhHHHHHHHHHHhhhhcccchh
Q 018386 144 WNQYKVMENDLTSKINSKRAEVDRANERIEKLLASTEQLQ------------LSNNEKDETIAKLKTQIAQMETGSKKWN 211 (357)
Q Consensus 144 WNQ~k~ME~Dyt~lLK~K~~EvaQAtE~iqKL~q~~EeLQ------------~~nqeKDdeI~RLqak~aeMe~~~Kkk~ 211 (357)
-+||+.|.+++..+... ...+...-.........++.|. -.-..+++-+..|...+.+++...++.+
T Consensus 5 ~~~~q~l~~~~~~l~~~-~~~l~~~~~E~~~v~~EL~~l~~d~~vy~~VG~vfv~~~~~ea~~~Le~~~e~le~~i~~l~ 83 (105)
T cd00632 5 LAQLQQLQQQLQAYIVQ-RQKVEAQLNENKKALEELEKLADDAEVYKLVGNVLVKQEKEEARTELKERLETIELRIKRLE 83 (105)
T ss_pred HHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHcCCCcchHHHHhhhHHhhccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 36788888887744333 3333333333344444444442 1235678888889998888888888888
Q ss_pred hHHHHHHHHHHHHHh
Q 018386 212 TEISRLTQELELLRK 226 (357)
Q Consensus 212 eeIs~L~~eLe~lrk 226 (357)
..+..+..++..++.
T Consensus 84 ~~~~~l~~~~~elk~ 98 (105)
T cd00632 84 RQEEDLQEKLKELQE 98 (105)
T ss_pred HHHHHHHHHHHHHHH
Confidence 888888888877764
No 100
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]
Probab=73.83 E-value=48 Score=35.78 Aligned_cols=47 Identities=17% Similarity=0.295 Sum_probs=37.2
Q ss_pred hhhhHhhhhhHHHhhhhhHHHHHHHHHHHHHHHHHHHHHhhhhhhhh
Q 018386 144 WNQYKVMENDLTSKINSKRAEVDRANERIEKLLASTEQLQLSNNEKD 190 (357)
Q Consensus 144 WNQ~k~ME~Dyt~lLK~K~~EvaQAtE~iqKL~q~~EeLQ~~nqeKD 190 (357)
-||++--=..|.++|+.-..|++.-.|.|+-|+++...|.....++|
T Consensus 318 ~~~mk~K~~~~~g~l~kl~~eie~kEeei~~L~~~~d~L~~q~~kq~ 364 (622)
T COG5185 318 VNAMKQKSQEWPGKLEKLKSEIELKEEEIKALQSNIDELHKQLRKQG 364 (622)
T ss_pred HHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhcC
Confidence 45666666789999999999999999999999999998865444444
No 101
>PLN03188 kinesin-12 family protein; Provisional
Probab=73.77 E-value=83 Score=37.24 Aligned_cols=98 Identities=20% Similarity=0.169 Sum_probs=53.3
Q ss_pred cchhhHHhhhhhhhhhhhhhHhhhhhHHHhhhhhHHHHHHHHHHHHHHHHH---HHHHhhhhhhhhhHHHHHHHHHHh-h
Q 018386 128 PKSIEVSAFLDERAFLWNQYKVMENDLTSKINSKRAEVDRANERIEKLLAS---TEQLQLSNNEKDETIAKLKTQIAQ-M 203 (357)
Q Consensus 128 eKdkEVsALlaEKdFVWNQ~k~ME~Dyt~lLK~K~~EvaQAtE~iqKL~q~---~EeLQ~~nqeKDdeI~RLqak~ae-M 203 (357)
++.+|..-|-.|+.=+--||+- -+|+.|| |-.|+.- .|+.-+.++++......=..|+.+ |
T Consensus 1170 ereker~~~~~enk~l~~qlrd------------taeav~a---agellvrl~eaeea~~~a~~r~~~~eqe~~~~~k~~ 1234 (1320)
T PLN03188 1170 EREKERRYLRDENKSLQAQLRD------------TAEAVQA---AGELLVRLKEAEEALTVAQKRAMDAEQEAAEAYKQI 1234 (1320)
T ss_pred HHHHHHHHHHHhhHHHHHHHhh------------HHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555555444444431 1444444 3444433 334445566655554444445544 6
Q ss_pred hhcccchhhHHHHHHHHHHHHHhhcCCCCccccccccc
Q 018386 204 ETGSKKWNTEISRLTQELELLRKSRTASDTPVLNRCTR 241 (357)
Q Consensus 204 e~~~Kkk~eeIs~L~~eLe~lrk~r~a~~tpvl~~ct~ 241 (357)
+-+-++-+.||+.|.+-|-.=|--.. .+.|..+.|-.
T Consensus 1235 ~klkrkh~~e~~t~~q~~aes~l~~~-~~~~~~~~~~~ 1271 (1320)
T PLN03188 1235 DKLKRKHENEISTLNQLVAESRLPKE-AIRPACNDDCM 1271 (1320)
T ss_pred HHHHHHHHHHHHHHHHHHhhccCChh-hcCcccccccc
Confidence 77777778899999887644333223 25677777654
No 102
>smart00338 BRLZ basic region leucin zipper.
Probab=73.66 E-value=14 Score=27.72 Aligned_cols=54 Identities=28% Similarity=0.430 Sum_probs=41.0
Q ss_pred HHHHHHHHHHhhhhhhhhhHHHHHHHHHHhhhhcccchhhHHHHHHHHHHHHHh
Q 018386 173 EKLLASTEQLQLSNNEKDETIAKLKTQIAQMETGSKKWNTEISRLTQELELLRK 226 (357)
Q Consensus 173 qKL~q~~EeLQ~~nqeKDdeI~RLqak~aeMe~~~Kkk~eeIs~L~~eLe~lrk 226 (357)
....+|-+-.+..-+.|-..|..|+.++..++........+++.|..++..|+.
T Consensus 8 rR~~rNR~aA~~~R~rKk~~~~~Le~~~~~L~~en~~L~~~~~~l~~e~~~lk~ 61 (65)
T smart00338 8 RRRERNREAARRSRERKKAEIEELERKVEQLEAENERLKKEIERLRRELEKLKS 61 (65)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455566666677777888888888888888887777788888888888877764
No 103
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=72.24 E-value=26 Score=31.87 Aligned_cols=74 Identities=22% Similarity=0.322 Sum_probs=41.6
Q ss_pred chhhHHhhhhhhhhhhhhhHhhhh-h---HHHhhhhhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHh
Q 018386 129 KSIEVSAFLDERAFLWNQYKVMEN-D---LTSKINSKRAEVDRANERIEKLLASTEQLQLSNNEKDETIAKLKTQIAQ 202 (357)
Q Consensus 129 KdkEVsALlaEKdFVWNQ~k~ME~-D---yt~lLK~K~~EvaQAtE~iqKL~q~~EeLQ~~nqeKDdeI~RLqak~ae 202 (357)
...++..+.++++-+=.+....=. + -.......+.++.+..+.+..|...+++++.....+-..|..++..+..
T Consensus 25 ~~~~l~~~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~r~~~l~~~i~~~~~~i~~~r~~l~~~~~~l~~ 102 (302)
T PF10186_consen 25 LRSELQQLKEENEELRRRIEEILESDSNGQLLEIQQLKREIEELRERLERLRERIERLRKRIEQKRERLEELRESLEQ 102 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555566666655554443222 0 1113334455666666677777777777766666666666666666553
No 104
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=72.09 E-value=9 Score=36.20 Aligned_cols=54 Identities=31% Similarity=0.466 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHhhhhcccchhhHHHHHHHHHHHH
Q 018386 171 RIEKLLASTEQLQLSNNEKDETIAKLKTQIAQMETGSKKWNTEISRLTQELELL 224 (357)
Q Consensus 171 ~iqKL~q~~EeLQ~~nqeKDdeI~RLqak~aeMe~~~Kkk~eeIs~L~~eLe~l 224 (357)
+++-|..+++.||..|++=.++-..|+..+.-|+...-..-++|..|...+.++
T Consensus 2 ~t~dL~~~v~dL~~~n~~L~~en~kL~~~ve~~ee~na~L~~e~~~L~~q~~s~ 55 (193)
T PF14662_consen 2 ATSDLLSCVEDLQLNNQKLADENAKLQRSVETAEEGNAQLAEEITDLRKQLKSL 55 (193)
T ss_pred chhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 105
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=71.41 E-value=34 Score=33.64 Aligned_cols=98 Identities=18% Similarity=0.239 Sum_probs=48.6
Q ss_pred hhhHHhhhhhhhhhhhhhHhhhhhHHHhhhhhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHhhhhcccc
Q 018386 130 SIEVSAFLDERAFLWNQYKVMENDLTSKINSKRAEVDRANERIEKLLASTEQLQLSNNEKDETIAKLKTQIAQMETGSKK 209 (357)
Q Consensus 130 dkEVsALlaEKdFVWNQ~k~ME~Dyt~lLK~K~~EvaQAtE~iqKL~q~~EeLQ~~nqeKDdeI~RLqak~aeMe~~~Kk 209 (357)
+.|++.|-.|..-.=.+++-+|++... ....+..|....++|+....+.=.+...++-++.+++.....
T Consensus 49 ~~el~~le~Ee~~l~~eL~~LE~e~~~-----------l~~el~~le~e~~~l~~eE~~~~~~~n~~~~~l~~~~~e~~s 117 (314)
T PF04111_consen 49 EEELEKLEQEEEELLQELEELEKEREE-----------LDQELEELEEELEELDEEEEEYWREYNELQLELIEFQEERDS 117 (314)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555544444444444444443 333333444444444333333333333444444444444456
Q ss_pred hhhHHHHHHHHHHHHHhhcCCCCcccccccccccc
Q 018386 210 WNTEISRLTQELELLRKSRTASDTPVLNRCTRIAG 244 (357)
Q Consensus 210 k~eeIs~L~~eLe~lrk~r~a~~tpvl~~ct~~~~ 244 (357)
.+..+.-..+.|+.||+ |-|+|.+-.|.-
T Consensus 118 l~~q~~~~~~~L~~L~k------tNv~n~~F~I~h 146 (314)
T PF04111_consen 118 LKNQYEYASNQLDRLRK------TNVYNDTFHIWH 146 (314)
T ss_dssp HHHHHHHHHHHHHCHHT--------TTTTT--EEE
T ss_pred HHHHHHHHHHHHHHHHh------cCchhceeeEee
Confidence 67778888888888886 456666665543
No 106
>PRK01156 chromosome segregation protein; Provisional
Probab=70.89 E-value=1.6e+02 Score=31.98 Aligned_cols=50 Identities=14% Similarity=0.315 Sum_probs=31.1
Q ss_pred HHHHHHHHHHhhhhcccchhhHHHHHHHHHHHHHhhcCC-CCccccccccc
Q 018386 192 TIAKLKTQIAQMETGSKKWNTEISRLTQELELLRKSRTA-SDTPVLNRCTR 241 (357)
Q Consensus 192 eI~RLqak~aeMe~~~Kkk~eeIs~L~~eLe~lrk~r~a-~~tpvl~~ct~ 241 (357)
+|..++.++.++.....+.+.+|..|...+..+++..+. +.-||-..|-+
T Consensus 410 ~~~e~~~~~~~l~~~i~~l~~~i~~l~~~~~el~~~~~~l~~~~~Cp~c~~ 460 (895)
T PRK01156 410 ELNEINVKLQDISSKVSSLNQRIRALRENLDELSRNMEMLNGQSVCPVCGT 460 (895)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCC
Confidence 345555555655666667778888888888888776551 12366555644
No 107
>TIGR03495 phage_LysB phage lysis regulatory protein, LysB family. Members of this protein family are phage lysis regulatory protein, including the well-studied protein LysB (lysis protein B) of Enterobacteria phage P2. For members of this family, genes are found in phage or in prophage regions of bacterial genomes, typically near a phage lysozyme or phage holin.
Probab=70.39 E-value=44 Score=29.86 Aligned_cols=88 Identities=17% Similarity=0.170 Sum_probs=68.8
Q ss_pred hhhhhhhHhhhhhHHHhhhhhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHhhhhcccchhhHHHHHHHH
Q 018386 141 AFLWNQYKVMENDLTSKINSKRAEVDRANERIEKLLASTEQLQLSNNEKDETIAKLKTQIAQMETGSKKWNTEISRLTQE 220 (357)
Q Consensus 141 dFVWNQ~k~ME~Dyt~lLK~K~~EvaQAtE~iqKL~q~~EeLQ~~nqeKDdeI~RLqak~aeMe~~~Kkk~eeIs~L~~e 220 (357)
.|+|-++..+-.+ +......+..+...+..+-..+.-|+..++..+..-.+|...++...+....-...|.+|.+|
T Consensus 15 ~~~~~~~~~l~~~----~~~a~~~~~~~~~~l~~~~~qL~~l~~~a~~~~~~Q~~Lr~~~~~~~~~l~~re~~i~rL~~E 90 (135)
T TIGR03495 15 GWQSQRLRNARAD----LERANRVLKAQQAELASKANQLIVLLALAKRNEEAQAQLRQQLAQARALLAQREQRIERLKRE 90 (135)
T ss_pred HHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 5566666555444 445556666777777788888888888888888899999999998999999999999999999
Q ss_pred HHHHHhhcCCCC
Q 018386 221 LELLRKSRTASD 232 (357)
Q Consensus 221 Le~lrk~r~a~~ 232 (357)
.|.+|.-=.+.+
T Consensus 91 Ne~lR~Wa~t~L 102 (135)
T TIGR03495 91 NEDLRRWADTPL 102 (135)
T ss_pred CHHHHHHhcCCC
Confidence 999998755433
No 108
>PRK10884 SH3 domain-containing protein; Provisional
Probab=70.04 E-value=27 Score=32.67 Aligned_cols=48 Identities=15% Similarity=0.179 Sum_probs=28.7
Q ss_pred HHHHhhhhhhhhhHHHHHHHHHHhhhhcccchhhHHHHHHHHHHHHHh
Q 018386 179 TEQLQLSNNEKDETIAKLKTQIAQMETGSKKWNTEISRLTQELELLRK 226 (357)
Q Consensus 179 ~EeLQ~~nqeKDdeI~RLqak~aeMe~~~Kkk~eeIs~L~~eLe~lrk 226 (357)
..+||...+.-++.|..|+.+-.++.........++..|+.+++.++.
T Consensus 120 ~~~l~~~~~~~~~~~~~L~~~n~~L~~~l~~~~~~~~~l~~~~~~~~~ 167 (206)
T PRK10884 120 TAEMQQKVAQSDSVINGLKEENQKLKNQLIVAQKKVDAANLQLDDKQR 167 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444455666666666666665556666666666666666554
No 109
>KOG4677 consensus Golgi integral membrane protein [Intracellular trafficking, secretion, and vesicular transport; General function prediction only]
Probab=69.00 E-value=1.7e+02 Score=31.54 Aligned_cols=27 Identities=19% Similarity=0.255 Sum_probs=20.9
Q ss_pred hhhHHhhhhhhhhh-------hhhhHhhhhhHHH
Q 018386 130 SIEVSAFLDERAFL-------WNQYKVMENDLTS 156 (357)
Q Consensus 130 dkEVsALlaEKdFV-------WNQ~k~ME~Dyt~ 156 (357)
.+|+..+.-|++|- -.||-.++++.-+
T Consensus 308 ~~E~ee~rve~~~s~ed~~~~q~q~~~Lrs~~~d 341 (554)
T KOG4677|consen 308 RKEFEETRVELPFSAEDSAHIQDQYTLLRSQIID 341 (554)
T ss_pred HHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHH
Confidence 67899999999985 6777777777654
No 110
>PF14931 IFT20: Intraflagellar transport complex B, subunit 20
Probab=68.64 E-value=32 Score=29.92 Aligned_cols=42 Identities=26% Similarity=0.376 Sum_probs=29.6
Q ss_pred HHHhhhhhhhhhHHHHHHHHHHhhhhcccchhhHHHHHHHHHHHHHhhc
Q 018386 180 EQLQLSNNEKDETIAKLKTQIAQMETGSKKWNTEISRLTQELELLRKSR 228 (357)
Q Consensus 180 EeLQ~~nqeKDdeI~RLqak~aeMe~~~Kkk~eeIs~L~~eLe~lrk~r 228 (357)
+.|.+....+..+-.-|++.++ +++.|.++|..|+++|.+--
T Consensus 69 N~l~s~~k~R~~~~q~lq~~I~-------Ek~~eLERl~~E~~sL~kve 110 (120)
T PF14931_consen 69 NLLKSEAKQREAQQQQLQALIA-------EKKMELERLRSEYESLQKVE 110 (120)
T ss_pred HHHHHHHHhHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555555555555 99999999999999998753
No 111
>KOG0999 consensus Microtubule-associated protein Bicaudal-D [Intracellular trafficking, secretion, and vesicular transport]
Probab=68.04 E-value=34 Score=37.58 Aligned_cols=119 Identities=17% Similarity=0.212 Sum_probs=80.7
Q ss_pred hchhHHHHHHHHHHHHhcCCCCCC-cchhhHH---hhhhhhhhhhhhhHhhhhhHHHhhhhhHHHHHHHHHHHHHHHHHH
Q 018386 104 YTDDQLADFMAWFDLLRQKPKDGE-PKSIEVS---AFLDERAFLWNQYKVMENDLTSKINSKRAEVDRANERIEKLLAST 179 (357)
Q Consensus 104 ~teDeL~DFka~~~~L~~~lke~S-eKdkEVs---ALlaEKdFVWNQ~k~ME~Dyt~lLK~K~~EvaQAtE~iqKL~q~~ 179 (357)
.++.++.++++.|..|+.+|.+.+ +|-.--. +||.||--+--||--||.+|- .++ -|.+|-+|+..+-+.+-
T Consensus 5 ~aeq~ve~lr~eierLT~el~q~t~e~~qaAeyGL~lLeeK~~Lkqq~eEleaeyd-~~R---~Eldqtkeal~q~~s~h 80 (772)
T KOG0999|consen 5 MAEQEVEKLRQEIERLTEELEQTTEEKIQAAEYGLELLEEKEDLKQQLEELEAEYD-LAR---TELDQTKEALGQYRSQH 80 (772)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHH---HHHHHHHHHHHHHHHHH
Confidence 345688999999999999988743 2211111 289999999999999999997 343 47777777766554332
Q ss_pred H------------HHhhhh---hhhhhHHHHHHHHHHhhhhcccchhhHHHHHHHHHHHHHh
Q 018386 180 E------------QLQLSN---NEKDETIAKLKTQIAQMETGSKKWNTEISRLTQELELLRK 226 (357)
Q Consensus 180 E------------eLQ~~n---qeKDdeI~RLqak~aeMe~~~Kkk~eeIs~L~~eLe~lrk 226 (357)
. .||-++ ..+--.|..|++++.+......+..+|..+|...-+.+.-
T Consensus 81 kk~~~~g~e~EesLLqESaakE~~yl~kI~eleneLKq~r~el~~~q~E~erl~~~~sd~~e 142 (772)
T KOG0999|consen 81 KKVARDGEEREESLLQESAAKEEYYLQKILELENELKQLRQELTNVQEENERLEKVHSDLKE 142 (772)
T ss_pred HHhhccchhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 1 233222 2344567788888887777777777777777666555443
No 112
>PF11500 Cut12: Spindle pole body formation-associated protein; InterPro: IPR021589 This is the central coiled-coil region of cut12 also found in other fungi, barring S. cerevisiae. The full protein has two predicted coiled-coil regions, and one consensus phosphorylation site for p34cdc2 and two for MAP kinase. During Schizosaccharomyces japonicus yFS275 mitosis, the duplicated spindle pole bodies (SPBs) nucleate microtubule arrays that interdigitate to form the mitotic spindle. Cut12 is localised to the SPB throughout the cell cycle, predominantly around the inner face of the interphase SPB, adjacent to the nucleus []. Cut12 associates with Fin1 and is important in this context for the activity of Plo1 [].
Probab=67.97 E-value=22 Score=32.46 Aligned_cols=67 Identities=15% Similarity=0.277 Sum_probs=55.5
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHhhhhcccchhhHHHHHHHHHHHHHhhcCCC
Q 018386 165 VDRANERIEKLLASTEQLQLSNNEKDETIAKLKTQIAQMETGSKKWNTEISRLTQELELLRKSRTAS 231 (357)
Q Consensus 165 vaQAtE~iqKL~q~~EeLQ~~nqeKDdeI~RLqak~aeMe~~~Kkk~eeIs~L~~eLe~lrk~r~a~ 231 (357)
-..|...+.||+++-...-+-+-+||.|-.+|..++.+-+.-+......|.+|...+..-+..+.++
T Consensus 79 ~~~a~~Em~KLi~yk~~aKsyAkkKD~Ea~~L~~KLkeEq~kv~~ME~~v~elas~m~~~~~~~~~~ 145 (152)
T PF11500_consen 79 HEKAEKEMEKLIKYKQLAKSYAKKKDAEAMRLAEKLKEEQEKVAEMERHVTELASQMASKRNSADSE 145 (152)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccc
Confidence 3567788999999999999999999999999999998777777777788888887777766665544
No 113
>PF15254 CCDC14: Coiled-coil domain-containing protein 14
Probab=67.96 E-value=40 Score=37.98 Aligned_cols=94 Identities=16% Similarity=0.191 Sum_probs=59.1
Q ss_pred HHHHHHHHHHHHhcCCCCC---------CcchhhHHhhhhhhhhhhhhhHhhhhhHHHhhhhhHHHHHHHHHHHH----H
Q 018386 108 QLADFMAWFDLLRQKPKDG---------EPKSIEVSAFLDERAFLWNQYKVMENDLTSKINSKRAEVDRANERIE----K 174 (357)
Q Consensus 108 eL~DFka~~~~L~~~lke~---------SeKdkEVsALlaEKdFVWNQ~k~ME~Dyt~lLK~K~~EvaQAtE~iq----K 174 (357)
|-+.++-.++.|-+.|++- ..=+=||.+|+.=+.++-||++--.+..- +|..|..|..+.+|.-. +
T Consensus 395 ENaqLrRrLrilnqqlreqe~~~k~~~~~~~n~El~sLqSlN~~Lq~ql~es~k~~e-~lq~kneellk~~e~q~~Enk~ 473 (861)
T PF15254_consen 395 ENAQLRRRLRILNQQLREQEKAEKTSGSQDCNLELFSLQSLNMSLQNQLQESLKSQE-LLQSKNEELLKVIENQKEENKR 473 (861)
T ss_pred hhHHHHHHHHHHHHHHHHHHhhcccCCCcccchhhHHHHHHHHHHHHHHHHHHHhHH-HHHHhHHHHHHHHHHHHHHHHH
Confidence 3345555666666666551 23466999999999999999998888775 88888888877764321 2
Q ss_pred HHHH----HHHHhhhhhhhhhHHHHHHHHHHh
Q 018386 175 LLAS----TEQLQLSNNEKDETIAKLKTQIAQ 202 (357)
Q Consensus 175 L~q~----~EeLQ~~nqeKDdeI~RLqak~ae 202 (357)
|..- =.+|--..+.-|.|+.|++-++.+
T Consensus 474 ~~~~~~ekd~~l~~~kq~~d~e~~rik~ev~e 505 (861)
T PF15254_consen 474 LRKMFQEKDQELLENKQQFDIETTRIKIEVEE 505 (861)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 2111 111222334456666777666543
No 114
>KOG4603 consensus TBP-1 interacting protein [Signal transduction mechanisms]
Probab=67.82 E-value=22 Score=33.82 Aligned_cols=71 Identities=17% Similarity=0.296 Sum_probs=45.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHH--hhhhcccchhhHHHHHHHHHHHHHhhcCCCCcc
Q 018386 163 AEVDRANERIEKLLASTEQLQLSNNEKDETIAKLKTQIA--QMETGSKKWNTEISRLTQELELLRKSRTASDTP 234 (357)
Q Consensus 163 ~EvaQAtE~iqKL~q~~EeLQ~~nqeKDdeI~RLqak~a--eMe~~~Kkk~eeIs~L~~eLe~lrk~r~a~~tp 234 (357)
.|..+--++|++|...+..||...--=+-||--|+.-++ +|+-..-+.++|.---+..|.++|.-++ -|||
T Consensus 79 eel~~ld~~i~~l~ek~q~l~~t~s~veaEik~L~s~Lt~eemQe~i~~L~kev~~~~erl~~~k~g~~-~vtp 151 (201)
T KOG4603|consen 79 EELQVLDGKIVALTEKVQSLQQTCSYVEAEIKELSSALTTEEMQEEIQELKKEVAGYRERLKNIKAGTN-HVTP 151 (201)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-cCCH
Confidence 556666777778877777777665555677777766554 5544444555555555566677766655 5777
No 115
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=67.38 E-value=14 Score=32.11 Aligned_cols=62 Identities=29% Similarity=0.438 Sum_probs=38.4
Q ss_pred HHHhhhhhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHhhhhcccchhhHHHHHHHHHHHHHh
Q 018386 154 LTSKINSKRAEVDRANERIEKLLASTEQLQLSNNEKDETIAKLKTQIAQMETGSKKWNTEISRLTQELELLRK 226 (357)
Q Consensus 154 yt~lLK~K~~EvaQAtE~iqKL~q~~EeLQ~~nqeKDdeI~RLqak~aeMe~~~Kkk~eeIs~L~~eLe~lrk 226 (357)
+.+.|+.++.|+....+.++.|.+.-+.| .+||++|-.+..++. ....++..|+++++.|..
T Consensus 21 L~s~lr~~E~E~~~l~~el~~l~~~r~~l-------~~Eiv~l~~~~e~~~----~~~~~~~~L~~el~~l~~ 82 (120)
T PF12325_consen 21 LQSQLRRLEGELASLQEELARLEAERDEL-------REEIVKLMEENEELR----ALKKEVEELEQELEELQQ 82 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHH
Confidence 55677777777777766666666655555 467777766665443 334455566666665543
No 116
>PF04859 DUF641: Plant protein of unknown function (DUF641); InterPro: IPR006943 This conserved region is found in a number of plant proteins of unknown function.
Probab=66.72 E-value=11 Score=33.55 Aligned_cols=33 Identities=18% Similarity=0.332 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHhh
Q 018386 171 RIEKLLASTEQLQLSNNEKDETIAKLKTQIAQM 203 (357)
Q Consensus 171 ~iqKL~q~~EeLQ~~nqeKDdeI~RLqak~aeM 203 (357)
.+.-....++.||...+.||.||.+|+.++.+.
T Consensus 88 li~~yE~~~~kLe~e~~~Kdsei~~Lr~~L~~~ 120 (131)
T PF04859_consen 88 LIKTYEIVVKKLEAELRAKDSEIDRLREKLDEL 120 (131)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444556677777777888888887777643
No 117
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=66.38 E-value=1.4e+02 Score=34.86 Aligned_cols=81 Identities=23% Similarity=0.286 Sum_probs=39.6
Q ss_pred hhHhhhhhHHHhhhhhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHH--------------------------
Q 018386 146 QYKVMENDLTSKINSKRAEVDRANERIEKLLASTEQLQLSNNEKDETIAKLKTQ-------------------------- 199 (357)
Q Consensus 146 Q~k~ME~Dyt~lLK~K~~EvaQAtE~iqKL~q~~EeLQ~~nqeKDdeI~RLqak-------------------------- 199 (357)
+|+..=.|.++.+.=--.+-+=|.|.+..||+.+|-|+--+++=.-++..|+++
T Consensus 301 ~~k~emad~ad~iEmaTldKEmAEERaesLQ~eve~lkEr~deletdlEILKaEmeekG~~~~~~ss~qfkqlEqqN~rL 380 (1243)
T KOG0971|consen 301 RYKEEMADTADAIEMATLDKEMAEERAESLQQEVEALKERVDELETDLEILKAEMEEKGSDGQAASSYQFKQLEQQNARL 380 (1243)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcccchHHHHHHHHHHHHH
Confidence 344444444444433333333445555555555555554444444444444444
Q ss_pred ---HHhhhhcccchhhHHHHHHHHHHHHHh
Q 018386 200 ---IAQMETGSKKWNTEISRLTQELELLRK 226 (357)
Q Consensus 200 ---~aeMe~~~Kkk~eeIs~L~~eLe~lrk 226 (357)
+..|--+.-..+..+.+|.+|||..++
T Consensus 381 KdalVrLRDlsA~ek~d~qK~~kelE~k~s 410 (1243)
T KOG0971|consen 381 KDALVRLRDLSASEKQDHQKLQKELEKKNS 410 (1243)
T ss_pred HHHHHHHHhcchHHHHHHHHHHHHHHHHhh
Confidence 444555555555666666666665543
No 118
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=66.37 E-value=32 Score=35.76 Aligned_cols=45 Identities=16% Similarity=0.103 Sum_probs=20.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHhhhh
Q 018386 161 KRAEVDRANERIEKLLASTEQLQLSNNEKDETIAKLKTQIAQMET 205 (357)
Q Consensus 161 K~~EvaQAtE~iqKL~q~~EeLQ~~nqeKDdeI~RLqak~aeMe~ 205 (357)
...+..++-.+.+.+.+.+++++....+...++..|+.++.|++.
T Consensus 159 ~~~~~~~~~~~~~~~~~~L~~l~~~~~~~~~eld~L~~ql~ELe~ 203 (563)
T TIGR00634 159 KVKAYRELYQAWLKARQQLKDRQQKEQELAQRLDFLQFQLEELEE 203 (563)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHh
Confidence 334444444444444444444444444444444444444444443
No 119
>PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules. The human TACC proteins have been linked to cancer and TACC2 has been identified as a possible tumour suppressor (AZU-1) [].
Probab=66.28 E-value=57 Score=30.85 Aligned_cols=94 Identities=19% Similarity=0.320 Sum_probs=52.3
Q ss_pred hhhHHhhhhhhhhhhhhhHhhhhhHHHhhhh------------------------hHHHHHHHHHHHHHHHHHH-HHHhh
Q 018386 130 SIEVSAFLDERAFLWNQYKVMENDLTSKINS------------------------KRAEVDRANERIEKLLAST-EQLQL 184 (357)
Q Consensus 130 dkEVsALlaEKdFVWNQ~k~ME~Dyt~lLK~------------------------K~~EvaQAtE~iqKL~q~~-EeLQ~ 184 (357)
..+|..++.|||=+---+.-||.-|++++++ -...+.+-....+.|.... +.|+.
T Consensus 68 ~~~i~~~~~erdq~~~dL~s~E~sfsdl~~ryek~K~vi~~~k~NEE~Lkk~~~ey~~~l~~~eqry~aLK~hAeekL~~ 147 (207)
T PF05010_consen 68 EAEIQKLLKERDQAYADLNSLEKSFSDLHKRYEKQKEVIEGYKKNEETLKKCIEEYEERLKKEEQRYQALKAHAEEKLEK 147 (207)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455556666666666666666666665553 2222233333333343332 33456
Q ss_pred hhhhhhhHHHHHHHHHHhhhhcccchhhHHHHHHHHHHH
Q 018386 185 SNNEKDETIAKLKTQIAQMETGSKKWNTEISRLTQELEL 223 (357)
Q Consensus 185 ~nqeKDdeI~RLqak~aeMe~~~Kkk~eeIs~L~~eLe~ 223 (357)
+|.+-+.-....+++++-+.+..++..-.+.-|+..|+-
T Consensus 148 ANeei~~v~~~~~~e~~aLqa~lkk~e~~~~SLe~~LeQ 186 (207)
T PF05010_consen 148 ANEEIAQVRSKHQAELLALQASLKKEEMKVQSLEESLEQ 186 (207)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666666666666666666666666666666666666654
No 120
>PF04859 DUF641: Plant protein of unknown function (DUF641); InterPro: IPR006943 This conserved region is found in a number of plant proteins of unknown function.
Probab=66.21 E-value=10 Score=33.58 Aligned_cols=49 Identities=22% Similarity=0.347 Sum_probs=40.9
Q ss_pred HHHHHHHHHHhhhhhhhhhHHHHHHHHHHhhhhcccchhhHHHHHHHHHHHHHhhc
Q 018386 173 EKLLASTEQLQLSNNEKDETIAKLKTQIAQMETGSKKWNTEISRLTQELELLRKSR 228 (357)
Q Consensus 173 qKL~q~~EeLQ~~nqeKDdeI~RLqak~aeMe~~~Kkk~eeIs~L~~eLe~lrk~r 228 (357)
..|.+.+.++|+...-++-.+.+|++++. .+|.||..|..+|+.+....
T Consensus 76 ~~l~a~~~e~qsli~~yE~~~~kLe~e~~-------~Kdsei~~Lr~~L~~~~~~n 124 (131)
T PF04859_consen 76 ARLAAEIQEQQSLIKTYEIVVKKLEAELR-------AKDSEIDRLREKLDELNRAN 124 (131)
T ss_pred cccccchHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHH
Confidence 45677788888888888888888888887 89999999999999876553
No 121
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=66.06 E-value=57 Score=31.15 Aligned_cols=50 Identities=16% Similarity=0.235 Sum_probs=33.6
Q ss_pred chhhHHhhhhhhhhhhhhhHhhhhhHHHhhhhhHHHHHHHHHHHHHHHHHHHHH
Q 018386 129 KSIEVSAFLDERAFLWNQYKVMENDLTSKINSKRAEVDRANERIEKLLASTEQL 182 (357)
Q Consensus 129 KdkEVsALlaEKdFVWNQ~k~ME~Dyt~lLK~K~~EvaQAtE~iqKL~q~~EeL 182 (357)
=.+|...|+.||.+.=.+++-+.+|+-. .+..+.||.+.-.+.+..+..+
T Consensus 37 ~~kE~~~L~~Er~~h~eeLrqI~~DIn~----lE~iIkqa~~er~~~~~~i~r~ 86 (230)
T PF10146_consen 37 YRKEMEELLQERMAHVEELRQINQDINT----LENIIKQAESERNKRQEKIQRL 86 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHH
Confidence 3467888999999998888888888763 4556666655444444444333
No 122
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=65.87 E-value=1.2e+02 Score=30.10 Aligned_cols=46 Identities=24% Similarity=0.211 Sum_probs=28.1
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHhhhh
Q 018386 157 KINSKRAEVDRANERIEKLLASTEQLQLSNNEKDETIAKLKTQIAQMET 205 (357)
Q Consensus 157 lLK~K~~EvaQAtE~iqKL~q~~EeLQ~~nqeKDdeI~RLqak~aeMe~ 205 (357)
.|+....+..+-.+.|+.+..-.++-+.-. ..||.+|++++.-++.
T Consensus 240 ~I~~~~~~k~e~~~~I~~ae~~~~~~r~~t---~~Ei~~Lk~~~~~Le~ 285 (312)
T smart00787 240 KIEDLTNKKSELNTEIAEAEKKLEQCRGFT---FKEIEKLKEQLKLLQS 285 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCCC---HHHHHHHHHHHHHHHH
Confidence 344444555556666666666666654332 4688899988875544
No 123
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=65.74 E-value=1.4e+02 Score=29.20 Aligned_cols=38 Identities=29% Similarity=0.299 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHH
Q 018386 163 AEVDRANERIEKLLASTEQLQLSNNEKDETIAKLKTQI 200 (357)
Q Consensus 163 ~EvaQAtE~iqKL~q~~EeLQ~~nqeKDdeI~RLqak~ 200 (357)
.+.+...+.+....+.+++|+..-+..+++|..+.++.
T Consensus 216 ~eL~~~~~~i~~~k~~l~el~~el~~l~~~i~~~~~~k 253 (325)
T PF08317_consen 216 QELAEQKEEIEAKKKELAELQEELEELEEKIEELEEQK 253 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444433333334443333333
No 124
>PF13815 Dzip-like_N: Iguana/Dzip1-like DAZ-interacting protein N-terminal
Probab=65.39 E-value=19 Score=30.32 Aligned_cols=54 Identities=30% Similarity=0.371 Sum_probs=37.5
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHhhhhcccchhhHHHHHHHHH
Q 018386 168 ANERIEKLLASTEQLQLSNNEKDETIAKLKTQIAQMETGSKKWNTEISRLTQEL 221 (357)
Q Consensus 168 AtE~iqKL~q~~EeLQ~~nqeKDdeI~RLqak~aeMe~~~Kkk~eeIs~L~~eL 221 (357)
|+=.|+=|+-+.+.|...+..-.+++..++.+..++....++.+++|..|..|+
T Consensus 64 aQl~ieYLl~~q~~L~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~k~lk~E~ 117 (118)
T PF13815_consen 64 AQLSIEYLLHCQEYLSSQLEQLEERLQELQQEIEKLKQKLKKQKEEIKKLKKES 117 (118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 334566777777777777777777777777777766666667777777776664
No 125
>KOG1937 consensus Uncharacterized conserved protein [Function unknown]
Probab=65.18 E-value=1.5e+02 Score=31.95 Aligned_cols=37 Identities=30% Similarity=0.211 Sum_probs=25.5
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 018386 9 ASLERQKRDKILVKMLKSQQEQIETLVKEREILEDHLKMQHE 50 (357)
Q Consensus 9 ~ss~r~~W~riLVkMLr~~q~QvEsL~~ER~~LEa~ik~QhE 50 (357)
+|+++++ |.-|.-+-.-++.|+++++.....++-..+
T Consensus 226 asse~ee-----~eel~eq~eeneel~ae~kqh~v~~~ales 262 (521)
T KOG1937|consen 226 ASSEEEE-----VEELTEQNEENEELQAEYKQHLVEYKALES 262 (521)
T ss_pred ccccchh-----HHHHHhhhhhHHHHHHHHHHHHHHHHHHHh
Confidence 6777777 445566666677888888877777665544
No 126
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=65.05 E-value=5 Score=42.75 Aligned_cols=33 Identities=27% Similarity=0.508 Sum_probs=25.7
Q ss_pred hHHHHHHHHHHhhhhcccchhhHHHHHHHHHHH
Q 018386 191 ETIAKLKTQIAQMETGSKKWNTEISRLTQELEL 223 (357)
Q Consensus 191 deI~RLqak~aeMe~~~Kkk~eeIs~L~~eLe~ 223 (357)
+.+..|+.++..++........+|..|+.+|+.
T Consensus 503 e~~~~L~~~~~~Le~e~~~L~~~~~~Le~~l~~ 535 (722)
T PF05557_consen 503 EELNELQKEIEELERENERLRQELEELESELEK 535 (722)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456667778887887778888888888888876
No 127
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=64.96 E-value=1.9e+02 Score=30.64 Aligned_cols=10 Identities=30% Similarity=0.478 Sum_probs=4.4
Q ss_pred hHHHHHHHHH
Q 018386 92 LREASLLKLM 101 (357)
Q Consensus 92 ~RE~~l~k~~ 101 (357)
.+...+|..+
T Consensus 327 ~~~~~i~~~~ 336 (650)
T TIGR03185 327 ERDKELLESL 336 (650)
T ss_pred HHHHHHHHHH
Confidence 3444444444
No 128
>PF14988 DUF4515: Domain of unknown function (DUF4515)
Probab=63.14 E-value=43 Score=31.26 Aligned_cols=48 Identities=29% Similarity=0.372 Sum_probs=25.3
Q ss_pred HHHHhhhhhhhhhHHHHHHHHHHhhhhccc---chhhHHHHHHHHHHHHHh
Q 018386 179 TEQLQLSNNEKDETIAKLKTQIAQMETGSK---KWNTEISRLTQELELLRK 226 (357)
Q Consensus 179 ~EeLQ~~nqeKDdeI~RLqak~aeMe~~~K---kk~eeIs~L~~eLe~lrk 226 (357)
+..|+..--++..++..|+.++..|.--.. .-..||..|..++..++.
T Consensus 49 ~~~Lq~qLlq~~k~~~~l~~eLq~l~~~~~~k~~qe~eI~~Le~e~~~~~~ 99 (206)
T PF14988_consen 49 TSELQDQLLQKEKEQAKLQQELQALKEFRRLKEQQEREIQTLEEELEKMRA 99 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444555556666666554443322 234566666666666554
No 129
>PF09728 Taxilin: Myosin-like coiled-coil protein; InterPro: IPR019132 Taxilin contains an extraordinarily long coiled-coil domain in its C-terminal half and is ubiquitously expressed. It is a novel binding partner of several syntaxin family members and is possibly involved in Ca(2+)-dependent exocytosis in neuroendocrine cells []. Gamma-taxilin, described as leucine zipper protein Factor Inhibiting ATF4-mediated Transcription (FIAT), localises to the nucleus in osteoblasts and dimerises with ATF4 to form inactive dimers, thus inhibiting ATF4-mediated transcription [].
Probab=62.83 E-value=1.6e+02 Score=29.01 Aligned_cols=75 Identities=15% Similarity=0.212 Sum_probs=41.8
Q ss_pred HHHHHHHHHHHHhcCCCCCCcchhhHHhhhhhhhhhhhhhHhhhhhHHHhhhhhHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 018386 108 QLADFMAWFDLLRQKPKDGEPKSIEVSAFLDERAFLWNQYKVMENDLTSKINSKRAEVDRANERIEKLLASTEQLQLSNN 187 (357)
Q Consensus 108 eL~DFka~~~~L~~~lke~SeKdkEVsALlaEKdFVWNQ~k~ME~Dyt~lLK~K~~EvaQAtE~iqKL~q~~EeLQ~~nq 187 (357)
.+..|..--..|...|..-++|..|+..-|.--|=|+..|+ .|.+..+-++.+|-..+..+.+-..
T Consensus 203 ~~~~~~~~E~~Lr~QL~~Y~~Kf~efq~tL~kSNe~F~tfk--------------~Emekm~Kk~kklEKE~~~~k~k~e 268 (309)
T PF09728_consen 203 QVQTLKETEKELREQLNLYSEKFEEFQDTLNKSNEVFETFK--------------KEMEKMSKKIKKLEKENQTWKSKWE 268 (309)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555556666665556777777777777777777665 3444444445555555555544333
Q ss_pred hhhhHHHHH
Q 018386 188 EKDETIAKL 196 (357)
Q Consensus 188 eKDdeI~RL 196 (357)
+=+..|..+
T Consensus 269 ~~n~~l~~m 277 (309)
T PF09728_consen 269 KSNKALIEM 277 (309)
T ss_pred HHhHHHHHH
Confidence 333333333
No 130
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=62.70 E-value=2.3e+02 Score=30.80 Aligned_cols=21 Identities=29% Similarity=0.267 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHh
Q 018386 163 AEVDRANERIEKLLASTEQLQ 183 (357)
Q Consensus 163 ~EvaQAtE~iqKL~q~~EeLQ 183 (357)
+.+-+|..--..|-+.+.+||
T Consensus 153 ~t~SRAlsQN~eLK~QL~Elq 173 (617)
T PF15070_consen 153 ATASRALSQNRELKEQLAELQ 173 (617)
T ss_pred hHHHHHHHhHHHHHHHHHHHH
Confidence 344445444455555555554
No 131
>PF11544 Spc42p: Spindle pole body component Spc42p; InterPro: IPR021611 Spc42p is a 42kDa component of the S.cerevisiae spindle body that localises to the electron dense central region of the SPB. Spc42p is a phosphoprotein which forms a polymeric layer at the periphery of the SPB central plaque. This functions during SPB duplication and also facilitates the attachment of the SPB to the nuclear membrane. ; PDB: 2Q6Q_B.
Probab=62.60 E-value=20 Score=29.61 Aligned_cols=54 Identities=22% Similarity=0.344 Sum_probs=31.8
Q ss_pred HHHHHHHHHhhhhhhhhhHHHHHHHHHHhhhhcccchhhHHHHHHHHHHHHHhh
Q 018386 174 KLLASTEQLQLSNNEKDETIAKLKTQIAQMETGSKKWNTEISRLTQELELLRKS 227 (357)
Q Consensus 174 KL~q~~EeLQ~~nqeKDdeI~RLqak~aeMe~~~Kkk~eeIs~L~~eLe~lrk~ 227 (357)
.|++.+.+|..--..|++||.||..=+.-+..-.-+-.+-..+|.+++..++-+
T Consensus 2 ~Li~qNk~L~~kL~~K~eEI~rLn~lv~sLR~KLiKYt~LnkkLq~~~~~~~~~ 55 (76)
T PF11544_consen 2 ELIKQNKELKKKLNDKQEEIDRLNILVGSLRGKLIKYTELNKKLQDQLLNLQRS 55 (76)
T ss_dssp ----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 467778888888888999999986554443333334444445555555555543
No 132
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=62.59 E-value=2.2e+02 Score=30.46 Aligned_cols=32 Identities=0% Similarity=-0.076 Sum_probs=15.8
Q ss_pred hhhhcccchhhHHHHHHHHHHHHHhhcCCCCc
Q 018386 202 QMETGSKKWNTEISRLTQELELLRKSRTASDT 233 (357)
Q Consensus 202 eMe~~~Kkk~eeIs~L~~eLe~lrk~r~a~~t 233 (357)
.++.+.+-..+--..|-..++.++-......+
T Consensus 380 ~L~Re~~~~~~~Y~~ll~r~~e~~~~~~~~~~ 411 (754)
T TIGR01005 380 ALQRDAAAKRQLYESYLTNYRQAASRQNYVPV 411 (754)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCC
Confidence 33333334455555555566666555543333
No 133
>PRK10884 SH3 domain-containing protein; Provisional
Probab=62.38 E-value=34 Score=32.05 Aligned_cols=38 Identities=18% Similarity=0.272 Sum_probs=19.6
Q ss_pred hHHHHHHHHHHhhhhcccchhhHHHHHHHHHHHHHhhc
Q 018386 191 ETIAKLKTQIAQMETGSKKWNTEISRLTQELELLRKSR 228 (357)
Q Consensus 191 deI~RLqak~aeMe~~~Kkk~eeIs~L~~eLe~lrk~r 228 (357)
..-..++.+++.-.....+.+++.++|..+|+.++...
T Consensus 118 ~~~~~l~~~~~~~~~~~~~L~~~n~~L~~~l~~~~~~~ 155 (206)
T PRK10884 118 QRTAEMQQKVAQSDSVINGLKEENQKLKNQLIVAQKKV 155 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444455666666666666655543
No 134
>PF10046 BLOC1_2: Biogenesis of lysosome-related organelles complex-1 subunit 2 ; InterPro: IPR019269 This entry represents a family of proteins that play a role in cellular proliferation, as well as in the biogenesis of specialised organelles of the endosomal-lysosomal system [].
Probab=61.90 E-value=85 Score=25.88 Aligned_cols=51 Identities=16% Similarity=0.142 Sum_probs=37.1
Q ss_pred HHHHHHHHHHhhhhhhhhhHHHHHHHHHHhhhhcccchhhHHHHHHHHHHH
Q 018386 173 EKLLASTEQLQLSNNEKDETIAKLKTQIAQMETGSKKWNTEISRLTQELEL 223 (357)
Q Consensus 173 qKL~q~~EeLQ~~nqeKDdeI~RLqak~aeMe~~~Kkk~eeIs~L~~eLe~ 223 (357)
.+-...+++....-+..=+.|+.+..++.+||..+...|+=+.+|+..+..
T Consensus 48 ~~~~~~l~~k~~~l~~~l~~Id~Ie~~V~~LE~~v~~LD~ysk~LE~k~k~ 98 (99)
T PF10046_consen 48 EKNLEDLNQKYEELQPYLQQIDQIEEQVTELEQTVYELDEYSKELESKFKK 98 (99)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 333333333334445566789999999999999999999999999887643
No 135
>PRK01156 chromosome segregation protein; Provisional
Probab=61.71 E-value=2.4e+02 Score=30.68 Aligned_cols=13 Identities=15% Similarity=0.141 Sum_probs=6.5
Q ss_pred ccCCCCCcccccc
Q 018386 275 VTPLSNYSTTTAQ 287 (357)
Q Consensus 275 ~~~~~~~~~~~~~ 287 (357)
+.|...+|..+.+
T Consensus 796 ~~~~~~lS~G~~~ 808 (895)
T PRK01156 796 VEGIDSLSGGEKT 808 (895)
T ss_pred cCccccCCHhHHH
Confidence 4455555555433
No 136
>PF15294 Leu_zip: Leucine zipper
Probab=61.60 E-value=50 Score=32.79 Aligned_cols=94 Identities=15% Similarity=0.173 Sum_probs=59.0
Q ss_pred chhhHHhhhhhhhhhhhhhHhhhhhHHHhhhhhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHhhhhcc-
Q 018386 129 KSIEVSAFLDERAFLWNQYKVMENDLTSKINSKRAEVDRANERIEKLLASTEQLQLSNNEKDETIAKLKTQIAQMETGS- 207 (357)
Q Consensus 129 KdkEVsALlaEKdFVWNQ~k~ME~Dyt~lLK~K~~EvaQAtE~iqKL~q~~EeLQ~~nqeKDdeI~RLqak~aeMe~~~- 207 (357)
..+||..|.+|++=.=|.++.+|..++..++.|..--++.++- +.++.+...... .--+.-+|.-|+.+|+.|....
T Consensus 130 l~kEi~rLq~EN~kLk~rl~~le~~at~~l~Ek~kl~~~L~~l-q~~~~~~~~k~~-~~~~~q~l~dLE~k~a~lK~e~e 207 (278)
T PF15294_consen 130 LNKEIDRLQEENEKLKERLKSLEKQATSALDEKSKLEAQLKEL-QDEQGDQKGKKD-LSFKAQDLSDLENKMAALKSELE 207 (278)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhhhcccc-ccccccchhhHHHHHHHHHHHHH
Confidence 7799999999999999999999999999998876544443221 111111111111 1235678889999998665442
Q ss_pred ---cchhhHHHHHHHHHHHH
Q 018386 208 ---KKWNTEISRLTQELELL 224 (357)
Q Consensus 208 ---Kkk~eeIs~L~~eLe~l 224 (357)
........-|+..|..-
T Consensus 208 k~~~d~~~~~k~L~e~L~~~ 227 (278)
T PF15294_consen 208 KALQDKESQQKALEETLQSC 227 (278)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 22222334455555544
No 137
>COG4487 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=61.48 E-value=52 Score=34.63 Aligned_cols=32 Identities=28% Similarity=0.391 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHH
Q 018386 170 ERIEKLLASTEQLQLSNNEKDETIAKLKTQIA 201 (357)
Q Consensus 170 E~iqKL~q~~EeLQ~~nqeKDdeI~RLqak~a 201 (357)
.+++.=..+.+.+...|.++|.++.-|+.++.
T Consensus 93 ~~~q~e~~~~~~~~~~N~e~dke~~~le~~L~ 124 (438)
T COG4487 93 LALQDEIAKLEALELLNLEKDKELELLEKELD 124 (438)
T ss_pred HHHHHHHHHHHHHHHhhHHhhHHHHHHHHHHH
Confidence 44444444444444555555555555555544
No 138
>KOG4657 consensus Uncharacterized conserved protein [Function unknown]
Probab=61.47 E-value=72 Score=31.37 Aligned_cols=10 Identities=20% Similarity=0.375 Sum_probs=6.6
Q ss_pred hhhhhHhhhh
Q 018386 143 LWNQYKVMEN 152 (357)
Q Consensus 143 VWNQ~k~ME~ 152 (357)
+|||+.+|..
T Consensus 24 i~n~~s~~D~ 33 (246)
T KOG4657|consen 24 IHNQRSKIDS 33 (246)
T ss_pred HHHHHHHHHH
Confidence 5777776654
No 139
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=60.71 E-value=1.3e+02 Score=27.35 Aligned_cols=70 Identities=19% Similarity=0.312 Sum_probs=36.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHH-------HHHHHHHhhhhcccchhhHHHHHHHHHHHHHhhcC
Q 018386 160 SKRAEVDRANERIEKLLASTEQLQLSNNEKDETIA-------KLKTQIAQMETGSKKWNTEISRLTQELELLRKSRT 229 (357)
Q Consensus 160 ~K~~EvaQAtE~iqKL~q~~EeLQ~~nqeKDdeI~-------RLqak~aeMe~~~Kkk~eeIs~L~~eLe~lrk~r~ 229 (357)
.-+.++++..+.+......+++++...+.+...+. .....+.+........+..+..+...+..-|..--
T Consensus 74 ~l~~~i~~~~~~i~~~r~~l~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~r~~l~ 150 (302)
T PF10186_consen 74 RLRERIERLRKRIEQKRERLEELRESLEQRRSRLSASQDLVESRQEQLEELQNELEERKQRLSQLQSQLARRRRQLI 150 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344555555555555555555555555444444 33333444444555556666666666665555443
No 140
>KOG0243 consensus Kinesin-like protein [Cytoskeleton]
Probab=60.68 E-value=3.3e+02 Score=31.86 Aligned_cols=126 Identities=17% Similarity=0.250 Sum_probs=86.8
Q ss_pred HHHHHHHHhhhchhHHHHHHHHHHHHhcCCCCCCcchhhHHhhhhhhhhhhhhhHhhhhhHHHhhhhhHHHHHHHHHHHH
Q 018386 94 EASLLKLMLEYTDDQLADFMAWFDLLRQKPKDGEPKSIEVSAFLDERAFLWNQYKVMENDLTSKINSKRAEVDRANERIE 173 (357)
Q Consensus 94 E~~l~k~~lE~teDeL~DFka~~~~L~~~lke~SeKdkEVsALlaEKdFVWNQ~k~ME~Dyt~lLK~K~~EvaQAtE~iq 173 (357)
+...|+..++++..||++|+..+..+ .+-|++++||-.|+...|.-..+....=....+.|+..++
T Consensus 484 ~~~~~k~~L~~~~~el~~~~ee~~~~--------------~~~l~~~e~ii~~~~~se~~l~~~a~~l~~~~~~s~~d~s 549 (1041)
T KOG0243|consen 484 EKEKLKSKLQNKNKELESLKEELQQA--------------KATLKEEEEIISQQEKSEEKLVDRATKLRRSLEESQDDLS 549 (1041)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667777888888888888777644 4557889999999999998888776666677777777777
Q ss_pred HHHHHHHHHhhhhhhhhhHHHHHHHHHHhhhhc-----ccchhhHHHHHHHHHHHHHhhcCCCCc
Q 018386 174 KLLASTEQLQLSNNEKDETIAKLKTQIAQMETG-----SKKWNTEISRLTQELELLRKSRTASDT 233 (357)
Q Consensus 174 KL~q~~EeLQ~~nqeKDdeI~RLqak~aeMe~~-----~Kkk~eeIs~L~~eLe~lrk~r~a~~t 233 (357)
-|-.-+..+-..++.=-.-|..++.++.++-.. .-....-|..|..-+..+-+++++..+
T Consensus 550 ~l~~kld~~~~~~d~n~~~~~~~~~~l~~~~~~~~~~v~~~~s~~~~~l~~~~~~~~s~~s~~~~ 614 (1041)
T KOG0243|consen 550 SLFEKLDRKDRLDDDNQEVIDDFQSQLSENLSTLHGLVASSSSQQISQLTTMLAQMESFLSAKSK 614 (1041)
T ss_pred HHHHHhhhhhccccccHHHHHHHhhhhhHHHHHHHHHHhhhhhhHHHHHHHHHhhhHHHhhhhcc
Confidence 777777777666555555566666665543222 223455667777777777667766543
No 141
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=60.08 E-value=73 Score=35.54 Aligned_cols=65 Identities=23% Similarity=0.369 Sum_probs=33.9
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHhhhhcccchhhHHHHHHHHHHHHHhhcCC
Q 018386 159 NSKRAEVDRANERIEKLLASTEQLQLSNNEKDETIAKLKTQIAQMETGSKKWNTEISRLTQELELLRKSRTA 230 (357)
Q Consensus 159 K~K~~EvaQAtE~iqKL~q~~EeLQ~~nqeKDdeI~RLqak~aeMe~~~Kkk~eeIs~L~~eLe~lrk~r~a 230 (357)
..+..+...-.+...++...-+.|...-++-.+.|-.++.++. +....|..|..+|+.+.+|.++
T Consensus 585 ea~~~~~~el~eelE~le~eK~~Le~~L~~~~d~lE~~~~qL~-------E~E~~L~eLq~eL~~~keS~s~ 649 (769)
T PF05911_consen 585 EADTSEKKELEEELEKLESEKEELEMELASCQDQLESLKNQLK-------ESEQKLEELQSELESAKESNSL 649 (769)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHH
Confidence 3333344444444455555555555544455555555555554 4445556666666666666553
No 142
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=60.02 E-value=23 Score=33.97 Aligned_cols=45 Identities=20% Similarity=0.341 Sum_probs=26.2
Q ss_pred HhhhhhhhhhHHHHHHHHHHhhhhcccchhhHHHHHHHHHHHHHh
Q 018386 182 LQLSNNEKDETIAKLKTQIAQMETGSKKWNTEISRLTQELELLRK 226 (357)
Q Consensus 182 LQ~~nqeKDdeI~RLqak~aeMe~~~Kkk~eeIs~L~~eLe~lrk 226 (357)
|+...++|+.+...++.+...|.--+++.+.|+-+|..|=++|+.
T Consensus 163 L~~el~~~~~~Le~~~~~~~al~Kq~e~~~~EydrLlee~~~Lq~ 207 (216)
T KOG1962|consen 163 LETELEKKQKKLEKAQKKVDALKKQSEGLQDEYDRLLEEYSKLQE 207 (216)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHH
Confidence 333344455555566666666666666666666666666666554
No 143
>COG0216 PrfA Protein chain release factor A [Translation, ribosomal structure and biogenesis]
Probab=59.77 E-value=59 Score=33.52 Aligned_cols=89 Identities=17% Similarity=0.320 Sum_probs=57.2
Q ss_pred cchhhHHhhhhhhhhhh--hhhHhhhhhHHHhhhhhHHHHHHHHHHHHHHHHHHHHHh-hhhhhhhhHHHHH-HHHHHhh
Q 018386 128 PKSIEVSAFLDERAFLW--NQYKVMENDLTSKINSKRAEVDRANERIEKLLASTEQLQ-LSNNEKDETIAKL-KTQIAQM 203 (357)
Q Consensus 128 eKdkEVsALlaEKdFVW--NQ~k~ME~Dyt~lLK~K~~EvaQAtE~iqKL~q~~EeLQ-~~nqeKDdeI~RL-qak~aeM 203 (357)
++..||.++|...+.+= .+|+.+=++|+.+- ++..+-....+++..++.++ ..++++|.++..+ +.++.
T Consensus 14 ~r~~el~~~L~~p~v~~d~~~~~~lske~a~l~-----~iv~~~~~~~~~~~~l~~a~~~l~~~~D~em~ema~~Ei~-- 86 (363)
T COG0216 14 ERYEELEALLSDPEVISDPDEYRKLSKEYAELE-----PIVEKYREYKKAQEDLEDAKEMLAEEKDPEMREMAEEEIK-- 86 (363)
T ss_pred HHHHHHHHHhcCcccccCHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHH--
Confidence 45678888888887664 67777777777542 33444444455555555553 4455567666543 33443
Q ss_pred hhcccchhhHHHHHHHHHHHHHhhc
Q 018386 204 ETGSKKWNTEISRLTQELELLRKSR 228 (357)
Q Consensus 204 e~~~Kkk~eeIs~L~~eLe~lrk~r 228 (357)
+.+.+|..|+.+|+.|---.
T Consensus 87 -----~~~~~~~~le~~L~~lLlPk 106 (363)
T COG0216 87 -----ELEAKIEELEEELKILLLPK 106 (363)
T ss_pred -----HHHHHHHHHHHHHHHhcCCC
Confidence 77889999999999886443
No 144
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=59.72 E-value=36 Score=30.39 Aligned_cols=35 Identities=31% Similarity=0.384 Sum_probs=21.4
Q ss_pred hhhhhhhhhHHHHHHHHHHhhhhcccchhhHHHHHHHHHHHH
Q 018386 183 QLSNNEKDETIAKLKTQIAQMETGSKKWNTEISRLTQELELL 224 (357)
Q Consensus 183 Q~~nqeKDdeI~RLqak~aeMe~~~Kkk~eeIs~L~~eLe~l 224 (357)
...+.+..+||..|+.++.+ ++.++..|....+.+
T Consensus 153 ~~~~~~~~~ei~~lk~el~~-------~~~~~~~LkkQ~~~l 187 (192)
T PF05529_consen 153 KEENKKLSEEIEKLKKELEK-------KEKEIEALKKQSEGL 187 (192)
T ss_pred hhhhhhhHHHHHHHHHHHHH-------HHHHHHHHHHHHHHH
Confidence 34456667788888888774 555555555554443
No 145
>PF13166 AAA_13: AAA domain
Probab=59.37 E-value=2.3e+02 Score=29.68 Aligned_cols=35 Identities=29% Similarity=0.440 Sum_probs=18.3
Q ss_pred HHHHHHHHHhhhhcccchhhHHHHHHHHHHHHHhh
Q 018386 193 IAKLKTQIAQMETGSKKWNTEISRLTQELELLRKS 227 (357)
Q Consensus 193 I~RLqak~aeMe~~~Kkk~eeIs~L~~eLe~lrk~ 227 (357)
+.+++.++..++...+..+.+|..++.++..++..
T Consensus 419 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~l~~~ 453 (712)
T PF13166_consen 419 IKELEKEINSLEKKLKKAKEEIKKIEKEIKELEAQ 453 (712)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444555555556666666665555543
No 146
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=57.05 E-value=54 Score=30.54 Aligned_cols=74 Identities=23% Similarity=0.297 Sum_probs=55.0
Q ss_pred hhHHHhhhhhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHhhhhcccchhhHHHHHHHHHHHHH
Q 018386 152 NDLTSKINSKRAEVDRANERIEKLLASTEQLQLSNNEKDETIAKLKTQIAQMETGSKKWNTEISRLTQELELLR 225 (357)
Q Consensus 152 ~Dyt~lLK~K~~EvaQAtE~iqKL~q~~EeLQ~~nqeKDdeI~RLqak~aeMe~~~Kkk~eeIs~L~~eLe~lr 225 (357)
.++.+-=.....+..+.+..++.|..++++|+.....-..+|.+|+.++.+++.-..+..--+.+.-++|+..=
T Consensus 45 d~~~~e~~~L~~e~~~l~~e~e~L~~~~~~l~~~v~~q~~el~~L~~qi~~~~~~~~~l~p~m~~m~~~L~~~v 118 (251)
T PF11932_consen 45 DQWDDEKQELLAEYRQLEREIENLEVYNEQLERQVASQEQELASLEQQIEQIEETRQELVPLMEQMIDELEQFV 118 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444455677778888888888899998888888899999999988777777777776667777776643
No 147
>KOG2751 consensus Beclin-like protein [Signal transduction mechanisms]
Probab=56.92 E-value=1.3e+02 Score=32.00 Aligned_cols=117 Identities=23% Similarity=0.291 Sum_probs=65.7
Q ss_pred hhhchhHHHHHHHHHHHHhcCCCCCCcchhhHHhhhhhhh-------hhhhhhHhhh---hhHHHhhhhhHHHHHHHHHH
Q 018386 102 LEYTDDQLADFMAWFDLLRQKPKDGEPKSIEVSAFLDERA-------FLWNQYKVME---NDLTSKINSKRAEVDRANER 171 (357)
Q Consensus 102 lE~teDeL~DFka~~~~L~~~lke~SeKdkEVsALlaEKd-------FVWNQ~k~ME---~Dyt~lLK~K~~EvaQAtE~ 171 (357)
.+.++||....++|+..|.+.-++. ++++|++|+. =...|++-+| .|....|+.++.+..++.|+
T Consensus 152 ~~~~~~e~~~Y~~~l~~Le~~~~~~-----~~~~~~~e~~~l~~eE~~L~q~lk~le~~~~~l~~~l~e~~~~~~~~~e~ 226 (447)
T KOG2751|consen 152 VEDAEDEVDTYKACLQRLEQQNQDV-----SEEDLLKELKNLKEEEERLLQQLEELEKEEAELDHQLKELEFKAERLNEE 226 (447)
T ss_pred HHHHHHHHHHHHHHHHHHhhcCccc-----chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455678888999999998876554 3333443332 2233333332 34455566666666666555
Q ss_pred HHHHHHHHHHHhhhhhhhhhHHHHHHHHHHhhhhcccchhhHHHHHHHHHHHHHhhcCCCCccccccccccc
Q 018386 172 IEKLLASTEQLQLSNNEKDETIAKLKTQIAQMETGSKKWNTEISRLTQELELLRKSRTASDTPVLNRCTRIA 243 (357)
Q Consensus 172 iqKL~q~~EeLQ~~nqeKDdeI~RLqak~aeMe~~~Kkk~eeIs~L~~eLe~lrk~r~a~~tpvl~~ct~~~ 243 (357)
-....+.-...+..+=+=+++|.-|++++. --+..+++.| .|-|++-|-.|-
T Consensus 227 ~~~~~~ey~~~~~q~~~~~del~Sle~q~~-----------------~s~~qldkL~---ktNv~n~~F~I~ 278 (447)
T KOG2751|consen 227 EDQYWREYNNFQRQLIEHQDELDSLEAQIE-----------------YSQAQLDKLR---KTNVFNATFHIW 278 (447)
T ss_pred HHHHHHHHHHHHHhhhcccchHHHHHHHHH-----------------HHHHHHHHHH---hhhhhhheeeEe
Confidence 555554444444444444556666655543 1233445555 378888888753
No 148
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=56.77 E-value=1.9e+02 Score=27.77 Aligned_cols=66 Identities=20% Similarity=0.307 Sum_probs=42.0
Q ss_pred hHHhhhhhhhhh---hhhhHhhhhhHHHhhhhhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHH
Q 018386 132 EVSAFLDERAFL---WNQYKVMENDLTSKINSKRAEVDRANERIEKLLASTEQLQLSNNEKDETIAKLKTQIA 201 (357)
Q Consensus 132 EVsALlaEKdFV---WNQ~k~ME~Dyt~lLK~K~~EvaQAtE~iqKL~q~~EeLQ~~nqeKDdeI~RLqak~a 201 (357)
|+..+-.|-.|+ -+....+..++...+ .|..|.+++|..|-..+.++.+...+..+.|.|+..++.
T Consensus 23 e~~~~e~ee~~L~e~~kE~~~L~~Er~~h~----eeLrqI~~DIn~lE~iIkqa~~er~~~~~~i~r~~eey~ 91 (230)
T PF10146_consen 23 EVESLENEEKCLEEYRKEMEELLQERMAHV----EELRQINQDINTLENIIKQAESERNKRQEKIQRLYEEYK 91 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444 233344455555443 356778888888888888888888877788877776665
No 149
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=56.47 E-value=1.4e+02 Score=30.27 Aligned_cols=42 Identities=26% Similarity=0.459 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhHHHHHHh
Q 018386 20 LVKMLKSQQEQIETLVKEREILEDHLKMQHEKWVSDVRLYEDHISQ 65 (357)
Q Consensus 20 LVkMLr~~q~QvEsL~~ER~~LEa~ik~QhE~W~sdv~~lqdrLsq 65 (357)
|..+|+...++...|-.|-+.|-.++...+. |..+|.-.|..
T Consensus 70 La~lL~~sre~Nk~L~~Ev~~Lrqkl~E~qG----D~KlLR~~la~ 111 (319)
T PF09789_consen 70 LAQLLSESREQNKKLKEEVEELRQKLNEAQG----DIKLLREKLAR 111 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc----hHHHHHHHHHh
Confidence 6677777777777777777777777655555 66666655554
No 150
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=56.31 E-value=19 Score=32.45 Aligned_cols=65 Identities=12% Similarity=0.239 Sum_probs=33.9
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHhhhhcccchhhHHHHHHHHH
Q 018386 157 KINSKRAEVDRANERIEKLLASTEQLQLSNNEKDETIAKLKTQIAQMETGSKKWNTEISRLTQEL 221 (357)
Q Consensus 157 lLK~K~~EvaQAtE~iqKL~q~~EeLQ~~nqeKDdeI~RLqak~aeMe~~~Kkk~eeIs~L~~eL 221 (357)
.+..+...++..+..+..|...+..|...-.+|..-|..|++++.-+.....-..+.+.+|+.|=
T Consensus 110 ~~~~~~~~l~~l~~~~~~L~~~~~~l~~~l~ek~k~~e~l~DE~~~L~l~~~~~e~k~~~l~~En 174 (194)
T PF08614_consen 110 ELSEKERRLAELEAELAQLEEKIKDLEEELKEKNKANEILQDELQALQLQLNMLEEKLRKLEEEN 174 (194)
T ss_dssp ----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555566666666666666666666666666666666665544333334444444444443
No 151
>KOG1899 consensus LAR transmembrane tyrosine phosphatase-interacting protein liprin [General function prediction only]
Probab=55.67 E-value=3.5e+02 Score=30.59 Aligned_cols=32 Identities=28% Similarity=0.335 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHH
Q 018386 169 NERIEKLLASTEQLQLSNNEKDETIAKLKTQI 200 (357)
Q Consensus 169 tE~iqKL~q~~EeLQ~~nqeKDdeI~RLqak~ 200 (357)
++.+++|..-+|.|=.+|.+||+.|.-|.-=+
T Consensus 273 ~~rd~~lk~a~eslm~ane~kdr~ie~lr~~l 304 (861)
T KOG1899|consen 273 SLRDNTLKNALESLMRANEQKDRFIESLRNYL 304 (861)
T ss_pred hhHHHHHHHHHHHHHhhchhhhhHHHHHHHHh
Confidence 44556788888888888888888887775443
No 152
>PF14988 DUF4515: Domain of unknown function (DUF4515)
Probab=55.48 E-value=98 Score=28.95 Aligned_cols=72 Identities=15% Similarity=0.285 Sum_probs=48.7
Q ss_pred hhhhhH-----------hhhhhHHHhhhhhHHHHHHHHHHHHHHHHHHHHH---hhhhhhhhhHHHHHHHHHHhhhhccc
Q 018386 143 LWNQYK-----------VMENDLTSKINSKRAEVDRANERIEKLLASTEQL---QLSNNEKDETIAKLKTQIAQMETGSK 208 (357)
Q Consensus 143 VWNQ~k-----------~ME~Dyt~lLK~K~~EvaQAtE~iqKL~q~~EeL---Q~~nqeKDdeI~RLqak~aeMe~~~K 208 (357)
+|+||. -|+++|+..+..=+....+=...+..|.+.+..| +..-..=+.+|..|+.++..|.....
T Consensus 23 L~~q~~~~~~~i~~~r~~l~s~y~~q~~~Lq~qLlq~~k~~~~l~~eLq~l~~~~~~k~~qe~eI~~Le~e~~~~~~e~~ 102 (206)
T PF14988_consen 23 LWKQYIQQLEEIQRERQELVSRYAKQTSELQDQLLQKEKEQAKLQQELQALKEFRRLKEQQEREIQTLEEELEKMRAEHA 102 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 688774 4677888777666666666655566666665555 34444457889999999887777766
Q ss_pred chhhHH
Q 018386 209 KWNTEI 214 (357)
Q Consensus 209 kk~eeI 214 (357)
..+.++
T Consensus 103 ~~l~~~ 108 (206)
T PF14988_consen 103 EKLQEA 108 (206)
T ss_pred HHHHHH
Confidence 665544
No 153
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=55.46 E-value=3.3e+02 Score=30.16 Aligned_cols=82 Identities=20% Similarity=0.301 Sum_probs=42.0
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHhhhhh--hhhhH-----HHHHHHHHHhhhhcc--------------cchhhHHHH
Q 018386 158 INSKRAEVDRANERIEKLLASTEQLQLSNN--EKDET-----IAKLKTQIAQMETGS--------------KKWNTEISR 216 (357)
Q Consensus 158 LK~K~~EvaQAtE~iqKL~q~~EeLQ~~nq--eKDde-----I~RLqak~aeMe~~~--------------Kkk~eeIs~ 216 (357)
++.-..|..+..|.+..|.+.+++|..... ++|-| +.-+|+|-+-||... -+.+.+|++
T Consensus 554 ~~~lr~elk~kee~~~~~e~~~~~lr~~~~e~~~~~e~L~~aL~amqdk~~~LE~sLsaEtriKldLfsaLg~akrq~ei 633 (697)
T PF09726_consen 554 LKKLRRELKQKEEQIRELESELQELRKYEKESEKDTEVLMSALSAMQDKNQHLENSLSAETRIKLDLFSALGDAKRQLEI 633 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455666666666666666666654321 22222 223455544443221 234445555
Q ss_pred H-------HHHHHHHHhhcCCCCcccccccc
Q 018386 217 L-------TQELELLRKSRTASDTPVLNRCT 240 (357)
Q Consensus 217 L-------~~eLe~lrk~r~a~~tpvl~~ct 240 (357)
+ ++|+..| |.+-|++.+||---+
T Consensus 634 ~~~~~~~~d~ei~~l-k~ki~~~~av~p~~~ 663 (697)
T PF09726_consen 634 AQGQLRKKDKEIEEL-KAKIAQLLAVMPSDS 663 (697)
T ss_pred HHHHHHHHHHHHHHH-HHHHHHHHhcCCccc
Confidence 3 3444444 456778888875433
No 154
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=55.37 E-value=1.8e+02 Score=32.16 Aligned_cols=93 Identities=18% Similarity=0.252 Sum_probs=73.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhHHHHHHhHHhHHHHHHHHHHHHHhhhhhhhchhhHHHHHHH
Q 018386 20 LVKMLKSQQEQIETLVKEREILEDHLKMQHEKWVSDVRLYEDHISQMKSEIVAQELIHLLDAAKSDMVVGLKLREASLLK 99 (357)
Q Consensus 20 LVkMLr~~q~QvEsL~~ER~~LEa~ik~QhE~W~sdv~~lqdrLsqm~~el~~eE~~~~~EaAk~~l~LGlK~RE~~l~k 99 (357)
+.+-+.....++|.|=.+-.+|.+.|..+.. .+..|+++|.++..+.. .+....-+ +-..++++..+.
T Consensus 420 ~~~~i~~~~~~ve~l~~e~~~L~~~~ee~k~----eie~L~~~l~~~~r~~~-~~~~~~re-------i~~~~~~I~~L~ 487 (652)
T COG2433 420 YEKRIKKLEETVERLEEENSELKRELEELKR----EIEKLESELERFRREVR-DKVRKDRE-------IRARDRRIERLE 487 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHH-HHHhhhHH-------HHHHHHHHHHHH
Confidence 7777888999999999999999999987775 78899999999887666 34444444 455678888888
Q ss_pred HHhhhchhHHHHHHHHHHHHhcCCC
Q 018386 100 LMLEYTDDQLADFMAWFDLLRQKPK 124 (357)
Q Consensus 100 ~~lE~teDeL~DFka~~~~L~~~lk 124 (357)
..|+.....++-++..|..|.+-.+
T Consensus 488 ~~L~e~~~~ve~L~~~l~~l~k~~~ 512 (652)
T COG2433 488 KELEEKKKRVEELERKLAELRKMRK 512 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 8888888788888888888875433
No 155
>PF03961 DUF342: Protein of unknown function (DUF342); InterPro: IPR005646 This family of bacterial proteins has no known function. The proteins are in the region of 500-600 amino acid residues in length.
Probab=55.37 E-value=55 Score=33.11 Aligned_cols=68 Identities=28% Similarity=0.392 Sum_probs=44.0
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHhhh------hhhhhhHHHHHHHHHHhhhhcccchhhHHHHHHHHHHHH
Q 018386 157 KINSKRAEVDRANERIEKLLASTEQLQLS------NNEKDETIAKLKTQIAQMETGSKKWNTEISRLTQELELL 224 (357)
Q Consensus 157 lLK~K~~EvaQAtE~iqKL~q~~EeLQ~~------nqeKDdeI~RLqak~aeMe~~~Kkk~eeIs~L~~eLe~l 224 (357)
.++.-+.+..+..+.+.+|.+.+..++.. ..++-..+.++.....++....+++++++..|..+|+.+
T Consensus 335 ~~~~l~~~~~~~~~~l~~l~~~l~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~l~~~~~~l~~~l~~~ 408 (451)
T PF03961_consen 335 KLEELEEELEELKEELEKLKKNLKKLKKLKKQGKLPPEKKEQLKKLKEKKKELKEELKELKEELKELKEELERS 408 (451)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 33444455556666667777776666542 345667777777777766666667777777777666666
No 156
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=55.14 E-value=38 Score=35.87 Aligned_cols=68 Identities=10% Similarity=0.174 Sum_probs=39.1
Q ss_pred hhhHHHhhhhhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHhhhhcccchhhHHHHHHHHHHHHHhh
Q 018386 151 ENDLTSKINSKRAEVDRANERIEKLLASTEQLQLSNNEKDETIAKLKTQIAQMETGSKKWNTEISRLTQELELLRKS 227 (357)
Q Consensus 151 E~Dyt~lLK~K~~EvaQAtE~iqKL~q~~EeLQ~~nqeKDdeI~RLqak~aeMe~~~Kkk~eeIs~L~~eLe~lrk~ 227 (357)
..+|.++... ..+++.++++..|.+.++.|+...+ .+.++..+++...++.++||..|+..++-++..
T Consensus 59 ~~~FddkVnq--SALteqQ~kasELEKqLaaLrqElq-------~~saq~~dle~KIkeLEaE~~~Lk~Ql~a~~~~ 126 (475)
T PRK13729 59 DTTFDDKVRQ--HATTEMQVTAAQMQKQYEEIRRELD-------VLNKQRGDDQRRIEKLGQDNAALAEQVKALGAN 126 (475)
T ss_pred cchhHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHH-------HHhhhhhhHHHHHHHHHHHHHHHHHHHHhhhcC
Confidence 4455555444 4455566677777777777742222 122333333444447778888888888655554
No 157
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=55.00 E-value=1.6e+02 Score=26.46 Aligned_cols=121 Identities=15% Similarity=0.138 Sum_probs=72.2
Q ss_pred HHHHHHHHHhhhchhHHHHHHHHHHHHhcCCCCCCcchhhHHhhhhhhhhhhhhhHhhhhhHHHhhhhhHHHHHHHHHHH
Q 018386 93 REASLLKLMLEYTDDQLADFMAWFDLLRQKPKDGEPKSIEVSAFLDERAFLWNQYKVMENDLTSKINSKRAEVDRANERI 172 (357)
Q Consensus 93 RE~~l~k~~lE~teDeL~DFka~~~~L~~~lke~SeKdkEVsALlaEKdFVWNQ~k~ME~Dyt~lLK~K~~EvaQAtE~i 172 (357)
++..+++-.+++-+-||...++....+... +.-..+||..|-.+-.-|=.=++.++.|+.++-..|+.-... .
T Consensus 17 ~e~dsle~~v~~LEreLe~~q~~~e~~~~d---aEn~k~eie~L~~el~~lt~el~~L~~EL~~l~sEk~~L~k~----l 89 (140)
T PF10473_consen 17 SEKDSLEDHVESLERELEMSQENKECLILD---AENSKAEIETLEEELEELTSELNQLELELDTLRSEKENLDKE----L 89 (140)
T ss_pred HhHhhHHHHHHHHHHHHHHHHHhHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----H
Confidence 444444444444445555555444333322 224456777777777777777888888888666555443333 4
Q ss_pred HHHHHHHHHHhhhhhhhhhHHHHHHHHHHhhhhcccchhhHHHHHHHHHHH
Q 018386 173 EKLLASTEQLQLSNNEKDETIAKLKTQIAQMETGSKKWNTEISRLTQELEL 223 (357)
Q Consensus 173 qKL~q~~EeLQ~~nqeKDdeI~RLqak~aeMe~~~Kkk~eeIs~L~~eLe~ 223 (357)
++.+..+.+|.+.+..-..-|..+.++..+|.-. .+..++.|..+|..
T Consensus 90 q~~q~kv~eLE~~~~~~~~~l~~~E~ek~q~~e~---~~~~ve~L~~ql~~ 137 (140)
T PF10473_consen 90 QKKQEKVSELESLNSSLENLLQEKEQEKVQLKEE---SKSAVEMLQKQLKE 137 (140)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHhh
Confidence 7777778888888877777777777765544432 34445555555543
No 158
>KOG3096 consensus Spliceosome-associated coiled-coil protein [Function unknown]
Probab=54.98 E-value=1.4e+02 Score=29.01 Aligned_cols=85 Identities=20% Similarity=0.233 Sum_probs=65.7
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhHHHHHHhHHhHHHHH-HHHHH--HHHhhh
Q 018386 8 QASLERQKRDKILVKMLKSQQEQIETLVKEREILEDHLKMQHEKWVSDVRLYEDHISQMKSEIVAQ-ELIHL--LDAAKS 84 (357)
Q Consensus 8 ~~ss~r~~W~riLVkMLr~~q~QvEsL~~ER~~LEa~ik~QhE~W~sdv~~lqdrLsqm~~el~~e-E~~~~--~EaAk~ 84 (357)
+--.++..|...| ++-++|+|-.+.+-.-||=--+-=-+.|.+.-.++++.|..|.++++.+ +.++- .+--..
T Consensus 89 gkr~d~~aW~e~l----~ns~aqlEhq~~r~~NLeLM~k~g~eaw~~~ne~le~~l~~aqkelq~~kk~iq~vn~~RK~~ 164 (225)
T KOG3096|consen 89 GKRNDDAAWQESL----LNSMAQLEHQLVRNENLELMSKHGEEAWKQYNEVLEVMLTHAQKELQKTKKLIQDVNRQRKHA 164 (225)
T ss_pred CccchHHHHHHHH----HHHHHHHHHHHHHHhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 3446788999887 8899999999999999998889999999999999999999999888763 33222 222234
Q ss_pred hhhhchhhHHHH
Q 018386 85 DMVVGLKLREAS 96 (357)
Q Consensus 85 ~l~LGlK~RE~~ 96 (357)
.+.-|.+.++++
T Consensus 165 Q~~ag~rL~~le 176 (225)
T KOG3096|consen 165 QLTAGERLRELE 176 (225)
T ss_pred HHHHHHHHHHHH
Confidence 555676666665
No 159
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=54.60 E-value=70 Score=28.89 Aligned_cols=62 Identities=19% Similarity=0.282 Sum_probs=31.9
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHhhhhcccchhhHHHHHHH
Q 018386 158 INSKRAEVDRANERIEKLLASTEQLQLSNNEKDETIAKLKTQIAQMETGSKKWNTEISRLTQ 219 (357)
Q Consensus 158 LK~K~~EvaQAtE~iqKL~q~~EeLQ~~nqeKDdeI~RLqak~aeMe~~~Kkk~eeIs~L~~ 219 (357)
|..-..++++-.+++..|...+++.+..++.=-||+.-|+..+.-+|.-..+...|...|-+
T Consensus 118 l~~l~~~~~~L~~~~~~l~~~l~ek~k~~e~l~DE~~~L~l~~~~~e~k~~~l~~En~~Lv~ 179 (194)
T PF08614_consen 118 LAELEAELAQLEEKIKDLEEELKEKNKANEILQDELQALQLQLNMLEEKLRKLEEENRELVE 179 (194)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444455555555555555555555544555555555555555555555555554433
No 160
>PF07352 Phage_Mu_Gam: Bacteriophage Mu Gam like protein; InterPro: IPR009951 The Gam protein, originally characterised in Bacteriophage Mu, protects linear double stranded DNA from exonuclease degradation in vitro and in vivo []. This protein is also found in many bacterial species as part of a suspected prophage. Further studies have shown that Gam is a functional counterpart of the eukaryotic Ku protein, which has key roles in DNA repair and in certain transposition events. Gam displays DNA binding characteristics remarkably similar to those of human Ku []. In addition, Gam can interfere with Ty1 retrotransposition in Saccharomyces cerevisiae (Baker's yeast). These data reveal structural and functional parallels between bacteriophage Gam and eukaryotic Ku and suggest that their functions have been evolutionarily conserved [].; GO: 0003690 double-stranded DNA binding, 0042262 DNA protection; PDB: 2P2U_B.
Probab=54.37 E-value=53 Score=28.60 Aligned_cols=64 Identities=20% Similarity=0.239 Sum_probs=43.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHhhhhcccchhhHHHHHHHHHHHHHhhcCCCCc
Q 018386 164 EVDRANERIEKLLASTEQLQLSNNEKDETIAKLKTQIAQMETGSKKWNTEISRLTQELELLRKSRTASDT 233 (357)
Q Consensus 164 EvaQAtE~iqKL~q~~EeLQ~~nqeKDdeI~RLqak~aeMe~~~Kkk~eeIs~L~~eLe~lrk~r~a~~t 233 (357)
+|..|-.+|..|+..+..+ ...-+++|.+++...+ ...+..+.+|..|+..|+.-....-+.+|
T Consensus 4 ~a~~al~ki~~l~~~~~~i---~~~~~~~I~~i~~~~~---~~~~~l~~~i~~l~~~l~~y~e~~r~e~~ 67 (149)
T PF07352_consen 4 EADWALRKIAELQREIARI---EAEANDEIARIKEWYE---AEIAPLQNRIEYLEGLLQAYAEANRDELT 67 (149)
T ss_dssp HHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHH---HHCHHHHHHHHHHHHHHHHHHHCTHHHH-
T ss_pred HHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHCHHhcc
Confidence 3444444455555544444 4455788988888775 45567889999999999988877766665
No 161
>PF14362 DUF4407: Domain of unknown function (DUF4407)
Probab=54.06 E-value=76 Score=30.08 Aligned_cols=18 Identities=11% Similarity=0.296 Sum_probs=8.9
Q ss_pred hhhhhhHHHHHHHHHHhh
Q 018386 186 NNEKDETIAKLKTQIAQM 203 (357)
Q Consensus 186 nqeKDdeI~RLqak~aeM 203 (357)
.++|.+.+...++++..+
T Consensus 184 ~~~~~~~~~~~~~~l~~l 201 (301)
T PF14362_consen 184 YKEKRAQLDAAQAELDTL 201 (301)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344555555555554433
No 162
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=53.86 E-value=74 Score=26.60 Aligned_cols=65 Identities=20% Similarity=0.351 Sum_probs=42.2
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHH-------HHHHHHhhhhcccchhhHHHHHHHHHH
Q 018386 158 INSKRAEVDRANERIEKLLASTEQLQLSNNEKDETIAK-------LKTQIAQMETGSKKWNTEISRLTQELE 222 (357)
Q Consensus 158 LK~K~~EvaQAtE~iqKL~q~~EeLQ~~nqeKDdeI~R-------Lqak~aeMe~~~Kkk~eeIs~L~~eLe 222 (357)
|-.=+.-|-||.+-|+=|+-.+|+|-.-|..=..++.- |..+-.++...-..|.+++.-|-+.++
T Consensus 6 leqLE~KIqqAvdtI~LLqmEieELKekn~~L~~e~~~~~~~r~~L~~en~qLk~E~~~WqerLr~LLGkm~ 77 (79)
T PRK15422 6 FEKLEAKVQQAIDTITLLQMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQNGWQERLQALLGRME 77 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 34445678899999999999999997555544444333 444455555555577777776665554
No 163
>PF09787 Golgin_A5: Golgin subfamily A member 5; InterPro: IPR019177 This entry represents a family of proteins involved in maintaining Golgi structure. They stimulate the formation of Golgi stacks and ribbons, and are involved in intra-Golgi retrograde transport. Two main interactions have been characterised: one with RAB1A that has been activated by GTP-binding and another with isoform CASP of CUTL1 [].
Probab=53.72 E-value=2.8e+02 Score=28.90 Aligned_cols=134 Identities=16% Similarity=0.190 Sum_probs=71.1
Q ss_pred hhhHHHHHHHHHhhhchhHHHHHHHHHH-HHhc------CCCC-----CCcc---hhhHHhhhhhhhhhhhhhHhhhhhH
Q 018386 90 LKLREASLLKLMLEYTDDQLADFMAWFD-LLRQ------KPKD-----GEPK---SIEVSAFLDERAFLWNQYKVMENDL 154 (357)
Q Consensus 90 lK~RE~~l~k~~lE~teDeL~DFka~~~-~L~~------~lke-----~SeK---dkEVsALlaEKdFVWNQ~k~ME~Dy 154 (357)
.-...+.+++-.+++.+-++.+|+.... .|.. .|+. +... .-|+..|-.|++++=.++.-|+...
T Consensus 218 e~~~~l~l~~~~~~~~~~el~~Yk~kA~~iLq~kEklI~~LK~~~~~~~~~~~~~~~el~~l~~E~~~~~ee~~~l~~Qi 297 (511)
T PF09787_consen 218 ELQEQLELLKAEGESEEAELQQYKQKAQRILQSKEKLIESLKEGCLEEGFDSSTNSIELEELKQERDHLQEEIQLLERQI 297 (511)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhcccccccccccchhcchhhHHHHHHHHHHHHHHHHHH
Confidence 3344566777788888889999994421 1111 1444 1111 2457788889999988777777766
Q ss_pred HHhhhhhHHHHHHHHHHHHHHHHHHHHHhhhh---hhhhhHHHHHHHHHHhhhh-----------cccchhhHHHHHHHH
Q 018386 155 TSKINSKRAEVDRANERIEKLLASTEQLQLSN---NEKDETIAKLKTQIAQMET-----------GSKKWNTEISRLTQE 220 (357)
Q Consensus 155 t~lLK~K~~EvaQAtE~iqKL~q~~EeLQ~~n---qeKDdeI~RLqak~aeMe~-----------~~Kkk~eeIs~L~~e 220 (357)
..+--.-.....++......+.+...+++... ..+++++.++.-++..++. -.+++..||.+|...
T Consensus 298 ~~l~~e~~d~e~~~~~~~~~~~~~~~~~~~~~~~~~~~e~e~~l~~~el~~~~ee~~~~~s~~~~k~~~ke~E~q~lr~~ 377 (511)
T PF09787_consen 298 EQLRAELQDLEAQLEGEQESFREQPQELSQQLEPELTTEAELRLYYQELYHYREELSRQKSPLQLKLKEKESEIQKLRNQ 377 (511)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHH
Confidence 33322222233334344444444444443222 2226666666666542222 223455555555555
Q ss_pred HHH
Q 018386 221 LEL 223 (357)
Q Consensus 221 Le~ 223 (357)
|-.
T Consensus 378 l~~ 380 (511)
T PF09787_consen 378 LSA 380 (511)
T ss_pred HHH
Confidence 544
No 164
>COG3879 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=52.79 E-value=67 Score=31.49 Aligned_cols=49 Identities=33% Similarity=0.422 Sum_probs=37.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhHHHHHHhHH
Q 018386 19 ILVKMLKSQQEQIETLVKEREILEDHLKMQHEKWVSDVRLYEDHISQMK 67 (357)
Q Consensus 19 iLVkMLr~~q~QvEsL~~ER~~LEa~ik~QhE~W~sdv~~lqdrLsqm~ 67 (357)
-|++.+++.|+++..|..+++-|+..++--+.-=.++-..+|+||...+
T Consensus 54 ~L~~e~~s~Q~~~~~L~~ev~~~~~~~~s~~~~~~t~~~~ie~~l~~l~ 102 (247)
T COG3879 54 DLVKELRSLQKKVNTLAAEVEDLENKLDSVRRSVLTDDAALEDRLEKLR 102 (247)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHH
Confidence 3999999999999999999999999998776333345556666555433
No 165
>PRK04863 mukB cell division protein MukB; Provisional
Probab=52.31 E-value=5e+02 Score=31.35 Aligned_cols=33 Identities=3% Similarity=0.037 Sum_probs=15.1
Q ss_pred HHHHHHHHhhhhcccchhhHHHHHHHHHHHHHh
Q 018386 194 AKLKTQIAQMETGSKKWNTEISRLTQELELLRK 226 (357)
Q Consensus 194 ~RLqak~aeMe~~~Kkk~eeIs~L~~eLe~lrk 226 (357)
....+++.+|+....+...+++.+...++.+++
T Consensus 445 enF~aklee~e~qL~elE~kL~~lea~leql~~ 477 (1486)
T PRK04863 445 EEFQAKEQEATEELLSLEQKLSVAQAAHSQFEQ 477 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444444444444444443
No 166
>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures. The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.
Probab=51.92 E-value=97 Score=24.66 Aligned_cols=62 Identities=19% Similarity=0.217 Sum_probs=34.4
Q ss_pred HHhhhhhhhhhhhhhHhhhhhHHHhhhhhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHH
Q 018386 133 VSAFLDERAFLWNQYKVMENDLTSKINSKRAEVDRANERIEKLLASTEQLQLSNNEKDETIAKLKTQIA 201 (357)
Q Consensus 133 VsALlaEKdFVWNQ~k~ME~Dyt~lLK~K~~EvaQAtE~iqKL~q~~EeLQ~~nqeKDdeI~RLqak~a 201 (357)
+..+++|||.-=.|+..==. .|-. -..+-++.|.||.+.+.++.....+-...|..+..++.
T Consensus 3 l~~~l~EKDe~Ia~L~eEGe----kLSk---~el~~~~~IKKLr~~~~e~e~~~~~l~~~~~~~e~~~~ 64 (74)
T PF12329_consen 3 LEKKLAEKDEQIAQLMEEGE----KLSK---KELKLNNTIKKLRAKIKELEKQIKELKKKLEELEKELE 64 (74)
T ss_pred HHHHHHhHHHHHHHHHHHHH----HHHH---HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45567777777666632111 1222 23445667888888887776555444444444444444
No 167
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=51.86 E-value=80 Score=31.05 Aligned_cols=47 Identities=19% Similarity=0.412 Sum_probs=29.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHhhhhc
Q 018386 160 SKRAEVDRANERIEKLLASTEQLQLSNNEKDETIAKLKTQIAQMETG 206 (357)
Q Consensus 160 ~K~~EvaQAtE~iqKL~q~~EeLQ~~nqeKDdeI~RLqak~aeMe~~ 206 (357)
.-+.|..........|.+.+++|+....+=+.+|..|+.+..++...
T Consensus 47 ~~~~el~~le~Ee~~l~~eL~~LE~e~~~l~~el~~le~e~~~l~~e 93 (314)
T PF04111_consen 47 ELEEELEKLEQEEEELLQELEELEKEREELDQELEELEEELEELDEE 93 (314)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445555555556666777777766666677777777776655433
No 168
>PF06818 Fez1: Fez1; InterPro: IPR009638 This family represents the eukaryotic Fez1 protein. Fez1 contains a leucine-zipper region with similarity to the DNA-binding domain of the cAMP-responsive activating-transcription factor 5 []. There is evidence that Fez1 inhibits cancer cell growth through regulation of mitosis, and that its alterations result in abnormal cell growth []. Note that some family members contain more than one copy of this region.; GO: 0005737 cytoplasm, 0016020 membrane
Probab=51.64 E-value=49 Score=31.48 Aligned_cols=68 Identities=22% Similarity=0.352 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHH--------------HHHhhhhcccchhhHHHHHHHHHHHHHhh
Q 018386 162 RAEVDRANERIEKLLASTEQLQLSNNEKDETIAKLKT--------------QIAQMETGSKKWNTEISRLTQELELLRKS 227 (357)
Q Consensus 162 ~~EvaQAtE~iqKL~q~~EeLQ~~nqeKDdeI~RLqa--------------k~aeMe~~~Kkk~eeIs~L~~eLe~lrk~ 227 (357)
.+|+.+=--.|-.|...+.++....+.++..+..|+. ++........-+.+.+..|+.|+..||..
T Consensus 23 q~E~~~K~~Eiv~Lr~ql~e~~~~l~~~~~~~~~l~~~~~~K~~ELE~ce~ELqr~~~Ea~lLrekl~~le~El~~Lr~~ 102 (202)
T PF06818_consen 23 QAEVNQKDSEIVSLRAQLRELRAELRNKESQIQELQDSLRTKQLELEVCENELQRKKNEAELLREKLGQLEAELAELREE 102 (202)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhHhHHHhHHHHHHHhCHHHHhhhhhhhhHHHHHHHHHH
Confidence 3444443344444444444444444444444444433 22222222233444555556666666655
Q ss_pred cC
Q 018386 228 RT 229 (357)
Q Consensus 228 r~ 229 (357)
-.
T Consensus 103 l~ 104 (202)
T PF06818_consen 103 LA 104 (202)
T ss_pred HH
Confidence 43
No 169
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana.
Probab=51.51 E-value=82 Score=29.23 Aligned_cols=52 Identities=29% Similarity=0.374 Sum_probs=31.8
Q ss_pred HHHHHHHHHhhhhhhhhhHHHHHHHHHHhhhh-------cccchhhHHHHHHHHHHHHH
Q 018386 174 KLLASTEQLQLSNNEKDETIAKLKTQIAQMET-------GSKKWNTEISRLTQELELLR 225 (357)
Q Consensus 174 KL~q~~EeLQ~~nqeKDdeI~RLqak~aeMe~-------~~Kkk~eeIs~L~~eLe~lr 225 (357)
++-+.+++-.....+.+.+|..|+.++-+|+- .-...+.||++|..+.+.|.
T Consensus 114 ~le~~~~~~~~~~~~~e~~i~~Le~ki~el~~~~~~~~~~ke~~~~ei~~lks~~~~l~ 172 (190)
T PF05266_consen 114 KLEKKIEEKEAELKELESEIKELEMKILELQRQAAKLKEKKEAKDKEISRLKSEAEALK 172 (190)
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333344566777777777777665554 34566778888876666554
No 170
>PRK06569 F0F1 ATP synthase subunit B'; Validated
Probab=51.41 E-value=1.8e+02 Score=26.60 Aligned_cols=91 Identities=18% Similarity=0.222 Sum_probs=53.1
Q ss_pred hhhhhhhhhHhhhhhHHHhhhhhHHHHHHHHHHHHHHHHHHHHHhhhhhhh-----hhHHHHHHHH----HHhhhhcccc
Q 018386 139 ERAFLWNQYKVMENDLTSKINSKRAEVDRANERIEKLLASTEQLQLSNNEK-----DETIAKLKTQ----IAQMETGSKK 209 (357)
Q Consensus 139 EKdFVWNQ~k~ME~Dyt~lLK~K~~EvaQAtE~iqKL~q~~EeLQ~~nqeK-----DdeI~RLqak----~aeMe~~~Kk 209 (357)
-+.|+|--+.-+=..-.+.+...=.+++++.+.++++.+..++.=..+..+ .+...+|.++ .+.++...++
T Consensus 27 l~kf~~ppI~~iLe~R~~~I~~~L~~Ae~~k~eAe~l~a~ye~~L~~Ar~eA~~I~~e~~~~~~a~~~~~~~~~ea~L~~ 106 (155)
T PRK06569 27 VYKFITPKAEEIFNNRQTNIQDNITQADTLTIEVEKLNKYYNEEIDKTNTEIDRLKKEKIDSLESEFLIKKKNLEQDLKN 106 (155)
T ss_pred HHHHhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356778777655555556777777788888888888877666552222222 2224455444 3455555544
Q ss_pred -hhhHHHHHHHHHHHHHhhcC
Q 018386 210 -WNTEISRLTQELELLRKSRT 229 (357)
Q Consensus 210 -k~eeIs~L~~eLe~lrk~r~ 229 (357)
.+++|....-..+++|.+-+
T Consensus 107 ~~~~~~~~~~~~~~~~~~~~~ 127 (155)
T PRK06569 107 SINQNIEDINLAAKQFRTNKS 127 (155)
T ss_pred HHHHHHHHHHHHHHHHHHhHH
Confidence 35556665555556655543
No 171
>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp
Probab=51.39 E-value=20 Score=35.98 Aligned_cols=40 Identities=28% Similarity=0.425 Sum_probs=36.2
Q ss_pred hhhhhHHHHHHHHHHhhhhcccchhhHHHHHHHHHHHHHh
Q 018386 187 NEKDETIAKLKTQIAQMETGSKKWNTEISRLTQELELLRK 226 (357)
Q Consensus 187 qeKDdeI~RLqak~aeMe~~~Kkk~eeIs~L~~eLe~lrk 226 (357)
|-|...|.-|++++.|.+.-..+-+.||..|.-.|--||-
T Consensus 64 QQKEV~iRHLkakLkes~~~l~dRetEI~eLksQL~RMrE 103 (305)
T PF15290_consen 64 QQKEVCIRHLKAKLKESENRLHDRETEIDELKSQLARMRE 103 (305)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 4689999999999999999999999999999988877764
No 172
>KOG0614 consensus cGMP-dependent protein kinase [Signal transduction mechanisms]
Probab=50.99 E-value=27 Score=38.29 Aligned_cols=55 Identities=27% Similarity=0.349 Sum_probs=48.9
Q ss_pred HHHHHHHHHHHhhhhhhhhhHHHHHHHHHHhhhhcccchhhHHHHHHHHHHHHHh
Q 018386 172 IEKLLASTEQLQLSNNEKDETIAKLKTQIAQMETGSKKWNTEISRLTQELELLRK 226 (357)
Q Consensus 172 iqKL~q~~EeLQ~~nqeKDdeI~RLqak~aeMe~~~Kkk~eeIs~L~~eLe~lrk 226 (357)
+..|+.-+-+|+.+.+.||.++..-|+.+.+......+.+.+|.+|+.||...|+
T Consensus 19 ~~~~~~~v~~l~~~v~~kd~elr~rqt~~~~l~~~~~~~~~~i~~ltnel~k~r~ 73 (732)
T KOG0614|consen 19 ARELQNLVPQLEEAVQRKDAELRQRQTILEELIKEISKLEGEIAKLTNELDKLRS 73 (732)
T ss_pred hHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhhc
Confidence 3456666778899999999999999999999999999999999999999999988
No 173
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=50.81 E-value=5.8e+02 Score=31.72 Aligned_cols=123 Identities=17% Similarity=0.117 Sum_probs=79.7
Q ss_pred HHHHHHHhhhchhHHHHHHHHHHHHhcCCCCCCcchhhHHhhhhhhhhhh--hhh--HhhhhhHHHhhhhhHHHHHHHHH
Q 018386 95 ASLLKLMLEYTDDQLADFMAWFDLLRQKPKDGEPKSIEVSAFLDERAFLW--NQY--KVMENDLTSKINSKRAEVDRANE 170 (357)
Q Consensus 95 ~~l~k~~lE~teDeL~DFka~~~~L~~~lke~SeKdkEVsALlaEKdFVW--NQ~--k~ME~Dyt~lLK~K~~EvaQAtE 170 (357)
-+.+..+++-..++|+.....+.-|..+++....+.+|+.+-+.|.-|-= -|| ..||+.+..+... ++=
T Consensus 124 kr~l~~~le~~~~ele~l~~~n~~l~~ql~ss~~~~~e~e~r~~e~~s~~vs~q~k~~rl~QEksll~s~-------~~w 196 (1822)
T KOG4674|consen 124 KRQLMELLERQKAELEALESENKDLNDQLKSSTKTLSELEARLQETQSEDVSSQLKEERLEQEKSLLESE-------NKW 196 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------hHH
Confidence 34455566666677777777777777777777788888888777765532 232 2455555533322 222
Q ss_pred HHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHhhhhcccchhhHHHHHHHHHHHH
Q 018386 171 RIEKLLASTEQLQLSNNEKDETIAKLKTQIAQMETGSKKWNTEISRLTQELELL 224 (357)
Q Consensus 171 ~iqKL~q~~EeLQ~~nqeKDdeI~RLqak~aeMe~~~Kkk~eeIs~L~~eLe~l 224 (357)
==..|..-++.|.+..++++.+|..|+.++..|........+-+.-|.+....|
T Consensus 197 L~~eL~~~~ekll~~~re~s~~~~~L~~~L~~~~~~~~~~q~~~~~l~q~~~eL 250 (1822)
T KOG4674|consen 197 LSRELSKVNEKLLSLRREHSIEVEQLEEKLSDLKESLAELQEKNKSLKQQNEEL 250 (1822)
T ss_pred HHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 234677888899999999999999998888766555555444444444444333
No 174
>PF01608 I_LWEQ: I/LWEQ domain; InterPro: IPR002558 I/LWEQ domains bind to actin. It has been shown that the I/LWEQ domains from mouse talin P26039 from SWISSPROT and yeast Sla2p P33338 from SWISSPROT interact with F-actin []. The domain has four conserved blocks, the name of the domain is derived from the initial conserved amino acid of each of the four blocks []. I/LWEQ domains can be placed into four major groups based on sequence similarity: Metazoan talin. Dictyostelium discoideum (Slime mould) TalA/TalB P54633 from SWISSPROT and SLA110. Metazoan Hip1p O00291 from SWISSPROT. Saccharomyces cerevisiae Sla2p P33338 from SWISSPROT. ; GO: 0003779 actin binding; PDB: 2QDQ_A 2JSW_A 1R0D_B.
Probab=50.60 E-value=25 Score=31.93 Aligned_cols=51 Identities=27% Similarity=0.372 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHhhhhhh-hhhHHHH---HHHHHHhhhhcccchhhHHHHHHHHHHHHHh
Q 018386 171 RIEKLLASTEQLQLSNNE-KDETIAK---LKTQIAQMETGSKKWNTEISRLTQELELLRK 226 (357)
Q Consensus 171 ~iqKL~q~~EeLQ~~nqe-KDdeI~R---Lqak~aeMe~~~Kkk~eeIs~L~~eLe~lrk 226 (357)
++..|...+.......++ .+..++. -+.+..|||+ ..+|.+|+.+|+..|.
T Consensus 85 At~~LV~av~~~~~~~~~~~~~d~s~ls~~~~k~~eMe~-----Qv~iL~lE~eLe~ar~ 139 (152)
T PF01608_consen 85 ATENLVAAVKAAIEQEEEQEEVDFSKLSLHQAKRQEMEA-----QVRILKLEKELEKARK 139 (152)
T ss_dssp HHHHHHHHHHHCCHHHHHHHH----------HHHHHHHH-----HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhhhcccchhhhcHHHHHHHHHHH-----HHHHHHHHHHHHHHHH
Confidence 344555555544333332 2223333 3778888877 4569999999988775
No 175
>PF01920 Prefoldin_2: Prefoldin subunit; InterPro: IPR002777 Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal beta subunit, eukaryotic prefoldin subunits 1, 2, 4 and 6. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 2ZDI_B 3AEI_B 2ZQM_A 1FXK_A.
Probab=49.95 E-value=1.2e+02 Score=23.71 Aligned_cols=40 Identities=30% Similarity=0.522 Sum_probs=33.0
Q ss_pred hhhhHHHHHHHHHHhhhhcccchhhHHHHHHHHHHHHHhh
Q 018386 188 EKDETIAKLKTQIAQMETGSKKWNTEISRLTQELELLRKS 227 (357)
Q Consensus 188 eKDdeI~RLqak~aeMe~~~Kkk~eeIs~L~~eLe~lrk~ 227 (357)
.+++-+..|+.++..++...++....+..+..+++.+++.
T Consensus 59 ~~~~~~~~L~~~~~~~~~~i~~l~~~~~~l~~~l~~~~~~ 98 (106)
T PF01920_consen 59 DKEEAIEELEERIEKLEKEIKKLEKQLKYLEKKLKELKKK 98 (106)
T ss_dssp EHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4788888999999888888888888888888888887764
No 176
>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms. The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.
Probab=49.84 E-value=5.4 Score=42.49 Aligned_cols=81 Identities=21% Similarity=0.263 Sum_probs=0.0
Q ss_pred hhhhhhhhhhhHhhhhhHHHhhhhhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHhhhhcccchhhHHHH
Q 018386 137 LDERAFLWNQYKVMENDLTSKINSKRAEVDRANERIEKLLASTEQLQLSNNEKDETIAKLKTQIAQMETGSKKWNTEISR 216 (357)
Q Consensus 137 laEKdFVWNQ~k~ME~Dyt~lLK~K~~EvaQAtE~iqKL~q~~EeLQ~~nqeKDdeI~RLqak~aeMe~~~Kkk~eeIs~ 216 (357)
|.+=+|.=.|.+.+|.+.+.++..+-.=.++. .++..+...+ ...-..|..|+.++.++....+++..++..
T Consensus 324 Led~~~lk~qvk~Lee~N~~l~e~~~~LEeel-~~~~~~~~ql-------e~~k~qi~eLe~~l~~~~~~~~~l~~e~~~ 395 (713)
T PF05622_consen 324 LEDLEDLKRQVKELEEDNAVLLETKAMLEEEL-KKARALKSQL-------EEYKKQIQELEQKLSEESRRADKLEFENKQ 395 (713)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556777888999998888877754332222 1122222222 233345566666666666555555555555
Q ss_pred HHHHHHHHH
Q 018386 217 LTQELELLR 225 (357)
Q Consensus 217 L~~eLe~lr 225 (357)
|..+++.+.
T Consensus 396 L~ek~~~l~ 404 (713)
T PF05622_consen 396 LEEKLEALE 404 (713)
T ss_dssp ---------
T ss_pred HHHHHHHHH
Confidence 555554443
No 177
>PF08581 Tup_N: Tup N-terminal; InterPro: IPR013890 The N-terminal region of the Tup protein has been shown to interact with the Ssn6 transcriptional co-repressor []. ; PDB: 3VP9_B 3VP8_B.
Probab=49.51 E-value=1.2e+02 Score=24.87 Aligned_cols=34 Identities=26% Similarity=0.560 Sum_probs=15.8
Q ss_pred hhHHHHHHHHHHhhhhcccc----hhhHHHHHHHHHHH
Q 018386 190 DETIAKLKTQIAQMETGSKK----WNTEISRLTQELEL 223 (357)
Q Consensus 190 DdeI~RLqak~aeMe~~~Kk----k~eeIs~L~~eLe~ 223 (357)
-.|+..++.++-+||..-.+ -.+||.+|+.+|+.
T Consensus 38 i~Em~~ir~~v~eLE~~h~kmK~~YEeEI~rLr~eLe~ 75 (79)
T PF08581_consen 38 IQEMQQIRQKVYELEQAHRKMKQQYEEEIARLRRELEQ 75 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33444444444444433222 23566666666654
No 178
>PF12252 SidE: Dot/Icm substrate protein; InterPro: IPR021014 This entry represents bacterial proteins that are typically between 397 and 1543 amino acids in length including SidE protein in the Dot/Icm pathway of Legionella pneumophila bacteria. There is little literature describing the family.
Probab=49.35 E-value=4.3e+02 Score=31.60 Aligned_cols=49 Identities=29% Similarity=0.346 Sum_probs=37.5
Q ss_pred hhhhHHHHHHHH-----HHhhhhcccchhhHHHHHHHHHHHHHhhcCCCCccccccc
Q 018386 188 EKDETIAKLKTQ-----IAQMETGSKKWNTEISRLTQELELLRKSRTASDTPVLNRC 239 (357)
Q Consensus 188 eKDdeI~RLqak-----~aeMe~~~Kkk~eeIs~L~~eLe~lrk~r~a~~tpvl~~c 239 (357)
+|-+.+.-|+|= =.||..-..++++.|...+++|+.|. .|-+|||++--
T Consensus 1041 eKqnIa~AL~ALn~IPSdKEms~Is~eLReQIq~~KQ~LesLQ---RAV~TPVvtd~ 1094 (1439)
T PF12252_consen 1041 EKQNIAGALQALNNIPSDKEMSKISSELREQIQSVKQDLESLQ---RAVVTPVVTDA 1094 (1439)
T ss_pred HhhhHHHHHHHHhcCCchhhhhhhhHHHHHHHHHHHHHHHHHH---HhhcccccccH
Confidence 455666666664 23788888899999999999999984 56789998643
No 179
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=49.11 E-value=23 Score=26.56 Aligned_cols=14 Identities=36% Similarity=0.475 Sum_probs=5.2
Q ss_pred hhHHHHHHHHHHHH
Q 018386 211 NTEISRLTQELELL 224 (357)
Q Consensus 211 ~eeIs~L~~eLe~l 224 (357)
+.++..|+.+++.|
T Consensus 37 ~~e~~~L~~ei~~l 50 (80)
T PF04977_consen 37 KKENEELKEEIERL 50 (80)
T ss_pred HHHHHHHHHHHHHh
Confidence 33333333333333
No 180
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=49.05 E-value=78 Score=31.30 Aligned_cols=64 Identities=20% Similarity=0.322 Sum_probs=41.7
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHhhhhcccchhhHHHHHHHHH
Q 018386 158 INSKRAEVDRANERIEKLLASTEQLQLSNNEKDETIAKLKTQIAQMETGSKKWNTEISRLTQEL 221 (357)
Q Consensus 158 LK~K~~EvaQAtE~iqKL~q~~EeLQ~~nqeKDdeI~RLqak~aeMe~~~Kkk~eeIs~L~~eL 221 (357)
+-..+.+.-.+++.-+.++..++.|+...++=-.+|..++.++.+.+.+.++.+.+|..|+..+
T Consensus 33 i~~~ds~l~~~~~~~~~~q~ei~~L~~qi~~~~~k~~~~~~~i~~~~~eik~l~~eI~~~~~~I 96 (265)
T COG3883 33 IQNQDSKLSELQKEKKNIQNEIESLDNQIEEIQSKIDELQKEIDQSKAEIKKLQKEIAELKENI 96 (265)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6666677777777777777777776666666666666666666666666666666666665444
No 181
>PRK06975 bifunctional uroporphyrinogen-III synthetase/uroporphyrin-III C-methyltransferase; Reviewed
Probab=48.31 E-value=1.1e+02 Score=32.92 Aligned_cols=19 Identities=11% Similarity=0.230 Sum_probs=14.6
Q ss_pred hhhhhhHhhhhhHHHhhhh
Q 018386 142 FLWNQYKVMENDLTSKINS 160 (357)
Q Consensus 142 FVWNQ~k~ME~Dyt~lLK~ 160 (357)
|+|.|+.-|++..+.+...
T Consensus 343 ~~~q~~~~~~~~l~~~~~~ 361 (656)
T PRK06975 343 ALNRKVDRLDQELVQRQQA 361 (656)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 5678899999888866554
No 182
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=48.13 E-value=5e+02 Score=30.13 Aligned_cols=26 Identities=27% Similarity=0.327 Sum_probs=15.6
Q ss_pred chhhHHHHHHH---HHHHHHHHHHHHHHH
Q 018386 9 ASLERQKRDKI---LVKMLKSQQEQIETL 34 (357)
Q Consensus 9 ~ss~r~~W~ri---LVkMLr~~q~QvEsL 34 (357)
+.-++++-++| |--|.+.++.|.+.|
T Consensus 648 ~~k~~e~l~~~~~kyK~lI~~lD~~~e~l 676 (970)
T KOG0946|consen 648 AEKYHEELDDIQQKYKGLIRELDYQIENL 676 (970)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 34456666666 556666666666554
No 183
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=48.04 E-value=1.2e+02 Score=26.51 Aligned_cols=39 Identities=31% Similarity=0.480 Sum_probs=21.7
Q ss_pred hhhhHHHHHHHHHHhhhhcccch-hhHHHHHHHHHHHHHh
Q 018386 188 EKDETIAKLKTQIAQMETGSKKW-NTEISRLTQELELLRK 226 (357)
Q Consensus 188 eKDdeI~RLqak~aeMe~~~Kkk-~eeIs~L~~eLe~lrk 226 (357)
+-..+|..|++++..+....... .++++++..+...+++
T Consensus 120 ~l~~e~~~l~~kL~~l~~~~~~vs~ee~~~~~~~~~~~~k 159 (169)
T PF07106_consen 120 ELEEEIEELEEKLEKLRSGSKPVSPEEKEKLEKEYKKWRK 159 (169)
T ss_pred HHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHH
Confidence 33345556666666555433332 4567777777666654
No 184
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=47.79 E-value=99 Score=28.71 Aligned_cols=40 Identities=13% Similarity=0.219 Sum_probs=19.5
Q ss_pred hhhhhhhhHHHHHHHHHHhhhhcccchhhHHHHHHHHHHH
Q 018386 184 LSNNEKDETIAKLKTQIAQMETGSKKWNTEISRLTQELEL 223 (357)
Q Consensus 184 ~~nqeKDdeI~RLqak~aeMe~~~Kkk~eeIs~L~~eLe~ 223 (357)
..|+.-.+++..|+.++.+++....+...+++.+..+-+.
T Consensus 104 ~e~~~l~~e~~~l~~~~e~Le~e~~~L~~~~~~~~eDY~~ 143 (161)
T TIGR02894 104 KENERLKNQNESLQKRNEELEKELEKLRQRLSTIEEDYQT 143 (161)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444555555555555544444444444444444443
No 185
>PRK10869 recombination and repair protein; Provisional
Probab=47.43 E-value=1e+02 Score=32.45 Aligned_cols=38 Identities=16% Similarity=0.127 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHhhh
Q 018386 167 RANERIEKLLASTEQLQLSNNEKDETIAKLKTQIAQME 204 (357)
Q Consensus 167 QAtE~iqKL~q~~EeLQ~~nqeKDdeI~RLqak~aeMe 204 (357)
.+=++.+++...+++++...++...++..|+-++.|++
T Consensus 161 ~~y~~~~~~~~~l~~l~~~~~~~~~~~d~l~fql~Ei~ 198 (553)
T PRK10869 161 AAYQLWHQSCRDLAQHQQQSQERAARKQLLQYQLKELN 198 (553)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 33333333333444443333344444444444443333
No 186
>cd07596 BAR_SNX The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=47.41 E-value=91 Score=26.85 Aligned_cols=26 Identities=35% Similarity=0.391 Sum_probs=19.4
Q ss_pred hHHhhhhhhhhhhhhhHhhhhhHHHh
Q 018386 132 EVSAFLDERAFLWNQYKVMENDLTSK 157 (357)
Q Consensus 132 EVsALlaEKdFVWNQ~k~ME~Dyt~l 157 (357)
.|.+++..|+=+|-+|...+++...+
T Consensus 104 s~k~~l~~R~~~~~~~~~~~~~l~~k 129 (218)
T cd07596 104 AVKETLDDRADALLTLQSLKKDLASK 129 (218)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46667888888888888888776643
No 187
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=46.77 E-value=43 Score=26.81 Aligned_cols=49 Identities=24% Similarity=0.359 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHhhhhcccchhhHHHHHHHHHHHHHhhcC
Q 018386 167 RANERIEKLLASTEQLQLSNNEKDETIAKLKTQIAQMETGSKKWNTEISRLTQELELLRKSRT 229 (357)
Q Consensus 167 QAtE~iqKL~q~~EeLQ~~nqeKDdeI~RLqak~aeMe~~~Kkk~eeIs~L~~eLe~lrk~r~ 229 (357)
+=..+|+.++.++..||. +|.+|+.+-. ...++...|.++.+.|+.-|.
T Consensus 8 ~LE~ki~~aveti~~Lq~-------e~eeLke~n~-------~L~~e~~~L~~en~~L~~e~~ 56 (72)
T PF06005_consen 8 QLEEKIQQAVETIALLQM-------ENEELKEKNN-------ELKEENEELKEENEQLKQERN 56 (72)
T ss_dssp HHHHHHHHHHHHHHHHHH-------HHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH-------HHHHHHHHHH-------hHHHHHHHHHHHHHHHHHHHH
Confidence 334555666666665553 3344554444 455777777777777776554
No 188
>PRK13454 F0F1 ATP synthase subunit B'; Provisional
Probab=46.33 E-value=2.2e+02 Score=25.63 Aligned_cols=61 Identities=10% Similarity=0.124 Sum_probs=35.8
Q ss_pred hhhhhhhhHhhhhhHHHhhhhhHHHHHHHHHHHHHHHHHHH-HHhhhhhhhhhHHHHHHHHH
Q 018386 140 RAFLWNQYKVMENDLTSKINSKRAEVDRANERIEKLLASTE-QLQLSNNEKDETIAKLKTQI 200 (357)
Q Consensus 140 KdFVWNQ~k~ME~Dyt~lLK~K~~EvaQAtE~iqKL~q~~E-eLQ~~nqeKDdeI~RLqak~ 200 (357)
+.|+|.-+..|=.+=...+.+.-.++..+.+.++++++..+ .|+.+..+-...|...+.+.
T Consensus 49 ~k~l~~PI~~~l~~R~~~I~~~l~~Ae~~~~eA~~~~~eye~~L~~Ar~EA~~ii~~A~~ea 110 (181)
T PRK13454 49 TRVALPRIGAVLAERQGTITNDLAAAEELKQKAVEAEKAYNKALADARAEAQRIVAETRAEI 110 (181)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56777765444333344666666777777766666665444 44555555555555554443
No 189
>PF13166 AAA_13: AAA domain
Probab=45.75 E-value=3.8e+02 Score=28.13 Aligned_cols=53 Identities=17% Similarity=0.286 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHhhhhcccchhhHHHHHHHHHHHH
Q 018386 165 VDRANERIEKLLASTEQLQLSNNEKDETIAKLKTQIAQMETGSKKWNTEISRLTQELELL 224 (357)
Q Consensus 165 vaQAtE~iqKL~q~~EeLQ~~nqeKDdeI~RLqak~aeMe~~~Kkk~eeIs~L~~eLe~l 224 (357)
.......++.+......++..-.....+|..|++++. .-+.=+..+..+|..+
T Consensus 419 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~l~~~~~-------~~~~~~~~iN~~L~~~ 471 (712)
T PF13166_consen 419 IKELEKEINSLEKKLKKAKEEIKKIEKEIKELEAQLK-------NTEPAADRINEELKRL 471 (712)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-------hhHHHHHHHHHHHHHh
Confidence 3344445555555566666555555666666766665 3344445555666665
No 190
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=45.70 E-value=3.4e+02 Score=27.50 Aligned_cols=155 Identities=17% Similarity=0.231 Sum_probs=82.9
Q ss_pred HHHHHHHHHH---HHHHH---HHHHHH-----------HhhhhhhhhhhhhHHHHHHhHHhHHHH-HHHHHHHHHhh---
Q 018386 25 KSQQEQIETL---VKERE---ILEDHL-----------KMQHEKWVSDVRLYEDHISQMKSEIVA-QELIHLLDAAK--- 83 (357)
Q Consensus 25 r~~q~QvEsL---~~ER~---~LEa~i-----------k~QhE~W~sdv~~lqdrLsqm~~el~~-eE~~~~~EaAk--- 83 (357)
.+.|.+++.+ +.+++ .|.++| ..+.+....+...--++|.|+.+++.- .++.+.|-.+-
T Consensus 58 tkty~Didavt~lLeEkerDLelaA~iGqsLl~~N~~L~~~~~~le~~L~~~~e~v~qLrHeL~~kdeLL~~ys~~~ee~ 137 (306)
T PF04849_consen 58 TKTYNDIDAVTRLLEEKERDLELAARIGQSLLEQNQDLSERNEALEEQLGAALEQVEQLRHELSMKDELLQIYSNDDEES 137 (306)
T ss_pred hcchhhHHHHHHHHHHHhhhHHHHHHHhHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHhhhc
Confidence 3467777654 33433 255555 223334444666667777788877766 44555443211
Q ss_pred -hhhhh--chhh----------HHHHHHHHHhhhchhHHHHHHHHHHHHhcCCCCCCcchhhHHhhhhhhhhhhhhhHhh
Q 018386 84 -SDMVV--GLKL----------REASLLKLMLEYTDDQLADFMAWFDLLRQKPKDGEPKSIEVSAFLDERAFLWNQYKVM 150 (357)
Q Consensus 84 -~~l~L--GlK~----------RE~~l~k~~lE~teDeL~DFka~~~~L~~~lke~SeKdkEVsALlaEKdFVWNQ~k~M 150 (357)
.+-.. +++. -....++.++-.-++|-..|+..+..|..+..+..+|.. .|+. |. -.||..-
T Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~~~le~Lq~Klk~LEeEN~~LR~Ea~~L~~et~~~EekEq---qLv~--dc-v~QL~~A 211 (306)
T PF04849_consen 138 EPESSESTPLRRNESSLSSQKCIQLEALQEKLKSLEEENEQLRSEASQLKTETDTYEEKEQ---QLVL--DC-VKQLSEA 211 (306)
T ss_pred ccccCCCccccccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhhccHHHH---HHHH--HH-HHHhhhc
Confidence 11111 1111 124556777777778888899998888877555444422 2222 22 1233211
Q ss_pred h---hhHHHhhhhhHHHHHHHHHHHHHHHHHHHHHhhh
Q 018386 151 E---NDLTSKINSKRAEVDRANERIEKLLASTEQLQLS 185 (357)
Q Consensus 151 E---~Dyt~lLK~K~~EvaQAtE~iqKL~q~~EeLQ~~ 185 (357)
= .++..-|-.|..+..+-.|.|..|+..+=.||.-
T Consensus 212 n~qia~LseELa~k~Ee~~rQQEEIt~LlsqivdlQ~r 249 (306)
T PF04849_consen 212 NQQIASLSEELARKTEENRRQQEEITSLLSQIVDLQQR 249 (306)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1 2334445566666666667777776666666533
No 191
>PF05615 THOC7: Tho complex subunit 7; InterPro: IPR008501 The Tho complex (THOC) is involved in transcription elongation and mRNA export from the nucleus []. This entry represents the subunit THOC7, which is found in higher eukaryotes, and the non-homologous subunit Mft1p found in yeast. The funtions of these subunits are unknown, and it is not known if these subunits are functionally equivalent.
Probab=45.63 E-value=1.3e+02 Score=25.61 Aligned_cols=21 Identities=33% Similarity=0.463 Sum_probs=14.8
Q ss_pred chhhHHHHHHHHHHHHHhhcC
Q 018386 209 KWNTEISRLTQELELLRKSRT 229 (357)
Q Consensus 209 kk~eeIs~L~~eLe~lrk~r~ 229 (357)
..+++|+.|..+|+..+.-|-
T Consensus 92 ~~k~~ie~lk~~L~~ak~~r~ 112 (139)
T PF05615_consen 92 QAKKEIEELKEELEEAKRVRQ 112 (139)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 667778888888877665553
No 192
>PF04912 Dynamitin: Dynamitin ; InterPro: IPR006996 Dynamitin is a subunit of the microtubule-dependent motor complex, it is also implicated in cell adhesion by binding to macrophage-enriched myristoylated alanine-rice C kinase substrate (MacMARCKS) []. It is also thought to modulate cytoplasmic dynein binding to an organelle, and plays a role in prometaphase chromosome alignment and spindle organisation during mitosis. Dynamitin is also involved in anchoring microtubules to centrosomes and may play a role in synapse formation during brain development []. ; GO: 0007017 microtubule-based process, 0005869 dynactin complex
Probab=45.59 E-value=3.2e+02 Score=27.25 Aligned_cols=64 Identities=13% Similarity=0.245 Sum_probs=46.9
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHhhhhcccchhhHHHHHHHHHHH
Q 018386 157 KINSKRAEVDRANERIEKLLASTEQLQLSNNEKDETIAKLKTQIAQMETGSKKWNTEISRLTQELEL 223 (357)
Q Consensus 157 lLK~K~~EvaQAtE~iqKL~q~~EeLQ~~nqeKDdeI~RLqak~aeMe~~~Kkk~eeIs~L~~eLe~ 223 (357)
.|+.-|.+++++...+..|-+.+..++..-..=+.-|..++..+ ..+.+..+..+..|+..++.
T Consensus 323 tL~~lH~~a~~~~~~l~~le~~q~~l~~~l~~~~~~L~~ve~~~---~~N~~~i~~n~~~le~Ri~~ 386 (388)
T PF04912_consen 323 TLKSLHEEAAEFSQTLSELESQQSDLQSQLKKWEELLNKVEEKF---KENMETIEKNVKKLEERIAK 386 (388)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHhc
Confidence 46778899999999999999999999888777788888888774 34444445555555555443
No 193
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=45.12 E-value=38 Score=33.22 Aligned_cols=40 Identities=23% Similarity=0.312 Sum_probs=17.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHH
Q 018386 161 KRAEVDRANERIEKLLASTEQLQLSNNEKDETIAKLKTQI 200 (357)
Q Consensus 161 K~~EvaQAtE~iqKL~q~~EeLQ~~nqeKDdeI~RLqak~ 200 (357)
|+.++++|++...+.++.+++.|..-++-++.|..|+.+.
T Consensus 219 ~~~~l~~a~~~l~~~~~~L~~~~~~l~~l~~~l~~l~~~~ 258 (344)
T PF12777_consen 219 KRQKLEEAEAELEEAEEQLAEKQAELAELEEKLAALQKEY 258 (344)
T ss_dssp HHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444444444433333333444443333
No 194
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=45.07 E-value=4.7e+02 Score=29.01 Aligned_cols=35 Identities=17% Similarity=0.435 Sum_probs=17.1
Q ss_pred HHHHHHHHHHhhhhcccchhhHHHHHHHHHHHHHh
Q 018386 192 TIAKLKTQIAQMETGSKKWNTEISRLTQELELLRK 226 (357)
Q Consensus 192 eI~RLqak~aeMe~~~Kkk~eeIs~L~~eLe~lrk 226 (357)
.+..++..+++.+....+..+++..+...+..+++
T Consensus 411 ~~~e~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 445 (908)
T COG0419 411 ELEELEKELEELERELEELEEEIKKLEEQINQLES 445 (908)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333334444444444555555555555555444
No 195
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].
Probab=44.98 E-value=67 Score=32.42 Aligned_cols=65 Identities=23% Similarity=0.287 Sum_probs=33.3
Q ss_pred HhhhhhhhhhHHHHHHHHHHhhhhcccchhhHHHHHHHHHHHHHhhcCCCCcc-ccccccccccccccCC
Q 018386 182 LQLSNNEKDETIAKLKTQIAQMETGSKKWNTEISRLTQELELLRKSRTASDTP-VLNRCTRIAGATTSNA 250 (357)
Q Consensus 182 LQ~~nqeKDdeI~RLqak~aeMe~~~Kkk~eeIs~L~~eLe~lrk~r~a~~tp-vl~~ct~~~~~~~~~~ 250 (357)
|.-..+-|+..+.-|..++.---........||.++.-|||... +.++... -|++|+. |.+.+..
T Consensus 86 lshdlq~Ke~qv~~lEgQl~s~Kkqie~Leqelkr~KsELErsQ--~~~~~~~~sl~~~st--pqk~f~~ 151 (307)
T PF10481_consen 86 LSHDLQVKESQVNFLEGQLNSCKKQIEKLEQELKRCKSELERSQ--QAASSGDVSLNPCST--PQKSFAT 151 (307)
T ss_pred hhHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HhhccCCccccccCC--chhhccC
Confidence 33333445555555555555222233344555566666666443 3444444 3788887 6654443
No 196
>PF07111 HCR: Alpha helical coiled-coil rod protein (HCR); InterPro: IPR009800 This family consists of several mammalian alpha helical coiled-coil rod HCR proteins. The function of HCR is unknown but it has been implicated in psoriasis in humans and is thought to affect keratinocyte proliferation [].; GO: 0030154 cell differentiation, 0005634 nucleus, 0005737 cytoplasm
Probab=44.94 E-value=5.1e+02 Score=29.34 Aligned_cols=77 Identities=31% Similarity=0.412 Sum_probs=50.5
Q ss_pred CcchhhHHhhhhhhhhhhhhhHhhhhhHHHhhhhhHHHHHHHHHHHHHHHHHHHHHhhh---hhhhhhHHHHHHHHHHhh
Q 018386 127 EPKSIEVSAFLDERAFLWNQYKVMENDLTSKINSKRAEVDRANERIEKLLASTEQLQLS---NNEKDETIAKLKTQIAQM 203 (357)
Q Consensus 127 SeKdkEVsALlaEKdFVWNQ~k~ME~Dyt~lLK~K~~EvaQAtE~iqKL~q~~EeLQ~~---nqeKDdeI~RLqak~aeM 203 (357)
-+|=.||..=++| ||..||+-+- .-.-|- .|-+..+.++|.. ..++..|..||+.+..
T Consensus 577 qekvsevEsrl~E------~L~~~E~rLN----eARREH-------tKaVVsLRQ~qrqa~reKer~~E~~~lq~e~~-- 637 (739)
T PF07111_consen 577 QEKVSEVESRLRE------QLSEMEKRLN----EARREH-------TKAVVSLRQIQRQAAREKERNQELRRLQEEAR-- 637 (739)
T ss_pred HHHHHHHHHHHHH------HHHHHHHHHH----HHHHHH-------HHHHHHHHHHHHHHHHhhchhHHHHHHHHHHH--
Confidence 3566677776665 5777776443 222222 3335556666522 2467788999999886
Q ss_pred hhcccchhhHHHHHHHHHHHHHhhcC
Q 018386 204 ETGSKKWNTEISRLTQELELLRKSRT 229 (357)
Q Consensus 204 e~~~Kkk~eeIs~L~~eLe~lrk~r~ 229 (357)
++++.+|...|+.+-+-++
T Consensus 638 -------~~e~~rl~~rlqelerdkN 656 (739)
T PF07111_consen 638 -------KEEGQRLTQRLQELERDKN 656 (739)
T ss_pred -------HHHHHHHHHHHHHHHHhhh
Confidence 8999999999988776655
No 197
>PF10234 Cluap1: Clusterin-associated protein-1; InterPro: IPR019366 This protein of 413 amino acids contains a central coiled-coil domain, possibly the region that binds to clusterin. Cluap1 expression is highest in the nucleus and gradually increases during late S to G2/M phases of the cell cycle and returns to the basal level in the G0/G1 phases. In addition, it is upregulated in colon cancer tissues compared to corresponding non-cancerous mucosa. It thus plays a crucial role in the life of the cell [].
Probab=44.47 E-value=2e+02 Score=28.41 Aligned_cols=20 Identities=30% Similarity=0.395 Sum_probs=8.5
Q ss_pred chhhHHHHHHHHHHHHHhhc
Q 018386 209 KWNTEISRLTQELELLRKSR 228 (357)
Q Consensus 209 kk~eeIs~L~~eLe~lrk~r 228 (357)
+++.|+++...-|+.|.+-|
T Consensus 201 kkk~ELER~qKRL~sLq~vR 220 (267)
T PF10234_consen 201 KKKQELERNQKRLQSLQSVR 220 (267)
T ss_pred HHHHHHHHHHHHHHHHHhcC
Confidence 34444444444444444433
No 198
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=44.15 E-value=6.8e+02 Score=30.54 Aligned_cols=62 Identities=16% Similarity=0.214 Sum_probs=38.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHhhhhcccchhhHHHHHHHHHHHHHhhc
Q 018386 164 EVDRANERIEKLLASTEQLQLSNNEKDETIAKLKTQIAQMETGSKKWNTEISRLTQELELLRKSR 228 (357)
Q Consensus 164 EvaQAtE~iqKL~q~~EeLQ~~nqeKDdeI~RLqak~aeMe~~~Kkk~eeIs~L~~eLe~lrk~r 228 (357)
|+.+|.-.+++.++.....+...+ +.|.+.+.+++--|..+....+.+.+|..-+|.|+--+
T Consensus 1574 ~Ad~Aq~~a~~ai~~a~~~~~~a~---~~l~kv~~~t~~aE~~~~~a~q~~~eL~~~~e~lk~~~ 1635 (1758)
T KOG0994|consen 1574 EADVAQGEAQDAIQGADRDIRLAQ---QLLAKVQEETAAAEKLATSATQQLGELETRMEELKHKA 1635 (1758)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444333333 34555566666677777888899999999998887544
No 199
>KOG3091 consensus Nuclear pore complex, p54 component (sc Nup57) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=43.69 E-value=1.5e+02 Score=32.03 Aligned_cols=75 Identities=24% Similarity=0.322 Sum_probs=56.5
Q ss_pred hhHHHhhhhhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHhhhhcccchhhHHHHHHHHHHHHHhhcCCC
Q 018386 152 NDLTSKINSKRAEVDRANERIEKLLASTEQLQLSNNEKDETIAKLKTQIAQMETGSKKWNTEISRLTQELELLRKSRTAS 231 (357)
Q Consensus 152 ~Dyt~lLK~K~~EvaQAtE~iqKL~q~~EeLQ~~nqeKDdeI~RLqak~aeMe~~~Kkk~eeIs~L~~eLe~lrk~r~a~ 231 (357)
+|+...||=-+-+++++.+.|..+...+.+||-.--.=--+|.+++-+.+ +.-.+|.++--.++-+|++-. +
T Consensus 337 ~dL~~R~K~Q~q~~~~~r~ri~~i~e~v~eLqk~~ad~~~KI~~~k~r~~-------~Ls~RiLRv~ikqeilr~~G~-~ 408 (508)
T KOG3091|consen 337 EDLRQRLKVQDQEVKQHRIRINAIGERVTELQKHHADAVAKIEEAKNRHV-------ELSHRILRVMIKQEILRKRGY-A 408 (508)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHhccCC-c
Confidence 37777888888999999999999999999999322222345666666665 567889999888888887544 5
Q ss_pred Ccc
Q 018386 232 DTP 234 (357)
Q Consensus 232 ~tp 234 (357)
+||
T Consensus 409 L~~ 411 (508)
T KOG3091|consen 409 LTP 411 (508)
T ss_pred CCc
Confidence 655
No 200
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=43.33 E-value=1.4e+02 Score=25.07 Aligned_cols=64 Identities=17% Similarity=0.392 Sum_probs=42.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhhhh--hhhhHHHHHHHHHHhhhhcccchhhHHHHHHHHHHHH
Q 018386 161 KRAEVDRANERIEKLLASTEQLQLSNN--EKDETIAKLKTQIAQMETGSKKWNTEISRLTQELELL 224 (357)
Q Consensus 161 K~~EvaQAtE~iqKL~q~~EeLQ~~nq--eKDdeI~RLqak~aeMe~~~Kkk~eeIs~L~~eLe~l 224 (357)
++.++++-.+.+...-.-+..+...-+ --.+++.+|+..+++|.-..+.....|.-++.-++.|
T Consensus 33 ~~~~~~~l~~~~~~~~~Rl~~lE~~l~~LPt~~dv~~L~l~l~el~G~~~~l~~~l~~v~~~~~lL 98 (106)
T PF10805_consen 33 KREDIEKLEERLDEHDRRLQALETKLEHLPTRDDVHDLQLELAELRGELKELSARLQGVSHQLDLL 98 (106)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 345666665666666655555543322 2367788888888888877777777777777666655
No 201
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=43.25 E-value=7.9 Score=41.29 Aligned_cols=93 Identities=22% Similarity=0.237 Sum_probs=0.0
Q ss_pred hhhHHhhhhhhhhhhhhhHhhhhhHHHhhhhhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHhhhhcccc
Q 018386 130 SIEVSAFLDERAFLWNQYKVMENDLTSKINSKRAEVDRANERIEKLLASTEQLQLSNNEKDETIAKLKTQIAQMETGSKK 209 (357)
Q Consensus 130 dkEVsALlaEKdFVWNQ~k~ME~Dyt~lLK~K~~EvaQAtE~iqKL~q~~EeLQ~~nqeKDdeI~RLqak~aeMe~~~Kk 209 (357)
...+..|.+...+.-.+-..++..+...-......-....+...+|+...+.+.. +-.+.+..|+.++.+|+.....
T Consensus 106 ~~~~~ele~~~~~l~~~~~~le~el~~~~e~~~~~k~~le~~~~~L~~E~~~~~~---e~~~~~~~l~~~~~~l~~~~~~ 182 (722)
T PF05557_consen 106 FKRNQELEARLKQLEEREEELEEELEEAEEELEQLKRKLEEEKRRLQREKEQLLE---EAREEISSLKNELSELERQAEN 182 (722)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHH
Confidence 3444445555555544444444444433222222222222334444333333332 2245677777777777655555
Q ss_pred hhhHHHHHHHHHHHHH
Q 018386 210 WNTEISRLTQELELLR 225 (357)
Q Consensus 210 k~eeIs~L~~eLe~lr 225 (357)
.+.++..|..+++.++
T Consensus 183 ~e~~~~~l~~e~~~l~ 198 (722)
T PF05557_consen 183 AESQIQSLESELEELK 198 (722)
T ss_dssp ----------------
T ss_pred HHHHHHHHHHHHHHHH
Confidence 5555555555555554
No 202
>PRK06231 F0F1 ATP synthase subunit B; Validated
Probab=43.17 E-value=2e+02 Score=26.59 Aligned_cols=62 Identities=13% Similarity=0.219 Sum_probs=40.4
Q ss_pred hhhhhhhhHhhhhhHHHhhhhhHHHHHHHHHHHHHHHHHHHH-HhhhhhhhhhHHHHHHHHHH
Q 018386 140 RAFLWNQYKVMENDLTSKINSKRAEVDRANERIEKLLASTEQ-LQLSNNEKDETIAKLKTQIA 201 (357)
Q Consensus 140 KdFVWNQ~k~ME~Dyt~lLK~K~~EvaQAtE~iqKL~q~~Ee-LQ~~nqeKDdeI~RLqak~a 201 (357)
+-|+|.-+.-+=.+-...+.+.-.++..+.+.++.+++..+. |+.+..+-.+.|...+.+..
T Consensus 66 ~k~l~kPi~~~L~~R~~~I~~~L~~Ae~~~~eA~~~l~e~e~~L~~A~~eA~~Ii~~A~~eAe 128 (205)
T PRK06231 66 IFLFWKPTQRFLNKRKELIEAEINQANELKQQAQQLLENAKQRHENALAQAKEIIDQANYEAL 128 (205)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567788877766666777777777788887777777655544 45555555555555555543
No 203
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=43.05 E-value=5.4e+02 Score=29.07 Aligned_cols=178 Identities=19% Similarity=0.231 Sum_probs=82.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH---hhhhhhhhhhhhHHHHHHhHHhHHHHHHHHHHHHHhhhhhhh--------
Q 018386 20 LVKMLKSQQEQIETLVKEREILEDHLK---MQHEKWVSDVRLYEDHISQMKSEIVAQELIHLLDAAKSDMVV-------- 88 (357)
Q Consensus 20 LVkMLr~~q~QvEsL~~ER~~LEa~ik---~QhE~W~sdv~~lqdrLsqm~~el~~eE~~~~~EaAk~~l~L-------- 88 (357)
+|.-|++-=.....|+.+...|+.+|+ +--+.-++....++| +..|..+|... +..+.....++..
T Consensus 514 fv~~LekeVh~C~DLLsgkadLE~fieE~s~tLdwIls~~~SLqD-v~s~~sEIK~~--f~~~ss~e~E~~~~dea~~~~ 590 (769)
T PF05911_consen 514 FVLVLEKEVHVCQDLLSGKADLERFIEEFSLTLDWILSNCFSLQD-VSSMRSEIKKN--FDGDSSSEAEINSEDEADTSE 590 (769)
T ss_pred HHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHccchHHH-HHHHHHHHHHh--hhhcccccccccchHHHHHHH
Confidence 677777777788888888888888773 122222333344444 33333333221 1111111111100
Q ss_pred ----chhhHHHHHHHHH----hhhchhHHHHHHHHHHHHhcCCCCCCcchhhHHhhhhhhhhhhhhhHhhhhhHHH---h
Q 018386 89 ----GLKLREASLLKLM----LEYTDDQLADFMAWFDLLRQKPKDGEPKSIEVSAFLDERAFLWNQYKVMENDLTS---K 157 (357)
Q Consensus 89 ----GlK~RE~~l~k~~----lE~teDeL~DFka~~~~L~~~lke~SeKdkEVsALlaEKdFVWNQ~k~ME~Dyt~---l 157 (357)
-.+...+..-+.. +....|+++.++..|..+.+.+.+ =..++..+-.-+.-+=.|+++|..-|-. .
T Consensus 591 ~~el~eelE~le~eK~~Le~~L~~~~d~lE~~~~qL~E~E~~L~e---Lq~eL~~~keS~s~~E~ql~~~~e~~e~le~~ 667 (769)
T PF05911_consen 591 KKELEEELEKLESEKEELEMELASCQDQLESLKNQLKESEQKLEE---LQSELESAKESNSLAETQLKAMKESYESLETR 667 (769)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 0000111111111 111224455555554444433222 1122223333445556888888777643 3
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHhh
Q 018386 158 INSKRAEVDRANERIEKLLASTEQLQLSNNEKDETIAKLKTQIAQM 203 (357)
Q Consensus 158 LK~K~~EvaQAtE~iqKL~q~~EeLQ~~nqeKDdeI~RLqak~aeM 203 (357)
+..-+.|+.+.+.++..|...++.--..-++-.-+-..|+.++.-|
T Consensus 668 ~~~~e~E~~~l~~Ki~~Le~Ele~er~~~~e~~~kc~~Le~el~r~ 713 (769)
T PF05911_consen 668 LKDLEAEAEELQSKISSLEEELEKERALSEELEAKCRELEEELERM 713 (769)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHhh
Confidence 3344677777777777777666554333333333444444444433
No 204
>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the N-terminal domain of Seryl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa [].; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3QO8_A 3QO5_A 3QO7_A 3QNE_A 3LSQ_A 3LSS_A 2DQ3_B 1SET_A 1SER_A 1SRY_B ....
Probab=42.92 E-value=73 Score=25.78 Aligned_cols=61 Identities=21% Similarity=0.325 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHh-hhhhhhh--hHHHHHHHHHHhhhhcccchhhHHHHHHHHHHH
Q 018386 163 AEVDRANERIEKLLASTEQLQ-LSNNEKD--ETIAKLKTQIAQMETGSKKWNTEISRLTQELEL 223 (357)
Q Consensus 163 ~EvaQAtE~iqKL~q~~EeLQ-~~nqeKD--deI~RLqak~aeMe~~~Kkk~eeIs~L~~eLe~ 223 (357)
.+..++...++.|+.....+. ..++.|. ++...|.+++.++-...+....+...++.+|+.
T Consensus 36 ~~~r~l~~~~e~lr~~rN~~sk~I~~~~~~~~~~~~l~~e~~~lk~~i~~le~~~~~~e~~l~~ 99 (108)
T PF02403_consen 36 QERRELQQELEELRAERNELSKEIGKLKKAGEDAEELKAEVKELKEEIKELEEQLKELEEELNE 99 (108)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCHTTCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444444444444442 1111222 355556666654443344444444444444443
No 205
>PF07798 DUF1640: Protein of unknown function (DUF1640); InterPro: IPR024461 This family consists of uncharacterised proteins.
Probab=42.92 E-value=80 Score=28.23 Aligned_cols=112 Identities=25% Similarity=0.230 Sum_probs=54.0
Q ss_pred HHHHHHHHHHHhcCCCCCCcchhhHHhhhhhhhhhhhhhHhhhhhHHHhhhhhHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 018386 109 LADFMAWFDLLRQKPKDGEPKSIEVSAFLDERAFLWNQYKVMENDLTSKINSKRAEVDRANERIEKLLASTEQLQLSNNE 188 (357)
Q Consensus 109 L~DFka~~~~L~~~lke~SeKdkEVsALlaEKdFVWNQ~k~ME~Dyt~lLK~K~~EvaQAtE~iqKL~q~~EeLQ~~nqe 188 (357)
.-.|++-|..|+.++.. --..+++.|.++...+=..+..|++.+..- |.+|...+..- .|.+
T Consensus 53 ~~~~~a~~~eLr~el~~--~~k~~~~~lr~~~e~L~~eie~l~~~L~~e--------------i~~l~a~~klD--~n~e 114 (177)
T PF07798_consen 53 EYLFKAAIAELRSELQN--SRKSEFAELRSENEKLQREIEKLRQELREE--------------INKLRAEVKLD--LNLE 114 (177)
T ss_pred HHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHH--HHHh
Confidence 34566666666554432 123456666666666666666666655433 33333322111 1122
Q ss_pred hhh---HHHHHHHHHHhhhhcccchhhHHHHHHHHHHHHHhhcCCCCccccccccc
Q 018386 189 KDE---TIAKLKTQIAQMETGSKKWNTEISRLTQELELLRKSRTASDTPVLNRCTR 241 (357)
Q Consensus 189 KDd---eI~RLqak~aeMe~~~Kkk~eeIs~L~~eLe~lrk~r~a~~tpvl~~ct~ 241 (357)
|.+ +...+..++. ....+.+.+|..|..++|.+|-.=.-.+.+++--|.+
T Consensus 115 K~~~r~e~~~~~~ki~---e~~~ki~~ei~~lr~~iE~~K~~~lr~~~g~i~~~~a 167 (177)
T PF07798_consen 115 KGRIREEQAKQELKIQ---ELNNKIDTEIANLRTEIESLKWDTLRWLVGVIFGCVA 167 (177)
T ss_pred HHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 211 1222222222 1122336788888888888776533334455544544
No 206
>cd09235 V_Alix Middle V-domain of mammalian Alix and related domains are dimerization and protein interaction modules. This family contains the middle V-shaped (V) domain of mammalian Alix (apoptosis-linked gene-2 interacting protein X) and related domains. It belongs to the V_Alix_like superfamily which includes the V-domains of Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, mammalian His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), and related domains. Alix, also known as apoptosis-linked gene-2 interacting protein 1 (AIP1), is part of the ESCRT (Endosomal Sorting Complexes Required for Transport) system, and participates in membrane remodeling processes, including the budding of enveloped viruses, vesicle budding inside late endosomal multivesicular bodies (MVBs), the abscission reactions of mammalian cell division, and in apoptosis. The Alix V-domain is a dimerization domain, and contains a binding site, partially conserved in the
Probab=42.76 E-value=2.3e+02 Score=27.81 Aligned_cols=29 Identities=41% Similarity=0.576 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 018386 20 LVKMLKSQQEQIETLVKEREILEDHLKMQ 48 (357)
Q Consensus 20 LVkMLr~~q~QvEsL~~ER~~LEa~ik~Q 48 (357)
.|..|+..-.+|+.|-.+|..++..++..
T Consensus 189 ~v~~Lr~~l~~l~~lk~eR~~~~~~Lk~~ 217 (339)
T cd09235 189 AVQELRQLMEQVETIKAEREVIESELKSA 217 (339)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 57888999999999999999999998655
No 207
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=42.74 E-value=1.4e+02 Score=31.31 Aligned_cols=77 Identities=18% Similarity=0.316 Sum_probs=0.0
Q ss_pred hHhhhhhHHHhhhhhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHhhhhcccchhhHHHHHHHHHHHHH
Q 018386 147 YKVMENDLTSKINSKRAEVDRANERIEKLLASTEQLQLSNNEKDETIAKLKTQIAQMETGSKKWNTEISRLTQELELLR 225 (357)
Q Consensus 147 ~k~ME~Dyt~lLK~K~~EvaQAtE~iqKL~q~~EeLQ~~nqeKDdeI~RLqak~aeMe~~~Kkk~eeIs~L~~eLe~lr 225 (357)
+..++.| .-|+.-..+.++=+-.|..-.+....|+..-.+=..+|..+..++.+-+...++.+..|+.+...|+.|.
T Consensus 31 ~s~~a~~--~~l~q~q~ei~~~~~~i~~~~~~~~kL~~~lk~~e~~i~~~~~ql~~s~~~l~~~~~~I~~~~~~l~~l~ 107 (420)
T COG4942 31 FSAAADD--KQLKQIQKEIAALEKKIREQQDQRAKLEKQLKSLETEIASLEAQLIETADDLKKLRKQIADLNARLNALE 107 (420)
T ss_pred hhHHhHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHH
No 208
>PRK03947 prefoldin subunit alpha; Reviewed
Probab=42.61 E-value=2.1e+02 Score=24.25 Aligned_cols=38 Identities=21% Similarity=0.370 Sum_probs=25.5
Q ss_pred hhhhHHHHHHHHHHhhhhcccchhhHHHHHHHHHHHHH
Q 018386 188 EKDETIAKLKTQIAQMETGSKKWNTEISRLTQELELLR 225 (357)
Q Consensus 188 eKDdeI~RLqak~aeMe~~~Kkk~eeIs~L~~eLe~lr 225 (357)
..++-|..|+.++..++...++..+.|..+.+.++.+.
T Consensus 91 ~~~eA~~~l~~~~~~l~~~~~~l~~~l~~~~~~~~~~~ 128 (140)
T PRK03947 91 DLDEAIEILDKRKEELEKALEKLEEALQKLASRIAQLA 128 (140)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667777777777666666666666666666666554
No 209
>PRK09174 F0F1 ATP synthase subunit B'; Validated
Probab=42.47 E-value=2.9e+02 Score=25.75 Aligned_cols=44 Identities=11% Similarity=0.104 Sum_probs=29.0
Q ss_pred hhhhhhhhhHhhhhhHHHhhhhhHHHHHHHHHHHHHHHHHHHHH
Q 018386 139 ERAFLWNQYKVMENDLTSKINSKRAEVDRANERIEKLLASTEQL 182 (357)
Q Consensus 139 EKdFVWNQ~k~ME~Dyt~lLK~K~~EvaQAtE~iqKL~q~~EeL 182 (357)
-+.|+|.-+.-|=.+=.+.+..--.++.++.+.+++++...|+.
T Consensus 70 L~k~~~~pI~~vLe~R~~~I~~~L~~Ae~~k~eAe~~~~~ye~~ 113 (204)
T PRK09174 70 MSRVILPRIGGIIETRRDRIAQDLDQAARLKQEADAAVAAYEQE 113 (204)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45678877765544455566666677777777777776665554
No 210
>PF10234 Cluap1: Clusterin-associated protein-1; InterPro: IPR019366 This protein of 413 amino acids contains a central coiled-coil domain, possibly the region that binds to clusterin. Cluap1 expression is highest in the nucleus and gradually increases during late S to G2/M phases of the cell cycle and returns to the basal level in the G0/G1 phases. In addition, it is upregulated in colon cancer tissues compared to corresponding non-cancerous mucosa. It thus plays a crucial role in the life of the cell [].
Probab=42.24 E-value=78 Score=31.18 Aligned_cols=75 Identities=15% Similarity=0.353 Sum_probs=50.1
Q ss_pred hhhhHHHhhhhhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHhhhhcccchhhHHHHHHHHHHHH
Q 018386 150 MENDLTSKINSKRAEVDRANERIEKLLASTEQLQLSNNEKDETIAKLKTQIAQMETGSKKWNTEISRLTQELELL 224 (357)
Q Consensus 150 ME~Dyt~lLK~K~~EvaQAtE~iqKL~q~~EeLQ~~nqeKDdeI~RLqak~aeMe~~~Kkk~eeIs~L~~eLe~l 224 (357)
+|+-....++.-..++.+....+..|......|..--++|-.|+.|.+.-+.-|++-.=--=+|-++|+.||+.+
T Consensus 163 iE~~l~~ai~~~~~~~~~~~~~l~~l~~de~~Le~KIekkk~ELER~qKRL~sLq~vRPAfmdEyEklE~EL~~l 237 (267)
T PF10234_consen 163 IEKALKEAIKAVQQQLQQTQQQLNNLASDEANLEAKIEKKKQELERNQKRLQSLQSVRPAFMDEYEKLEEELQKL 237 (267)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHH
Confidence 555555555555555666555555555555556666666677777777777666666666668889999999875
No 211
>PRK10722 hypothetical protein; Provisional
Probab=42.07 E-value=1.1e+02 Score=30.25 Aligned_cols=60 Identities=12% Similarity=0.163 Sum_probs=46.2
Q ss_pred HHHHHHHHHHHHHHHHHHHH---HHHHHHHhhhhhhhhhhhhHHHHHHhHHhHHHH-HHHHHHH
Q 018386 20 LVKMLKSQQEQIETLVKERE---ILEDHLKMQHEKWVSDVRLYEDHISQMKSEIVA-QELIHLL 79 (357)
Q Consensus 20 LVkMLr~~q~QvEsL~~ER~---~LEa~ik~QhE~W~sdv~~lqdrLsqm~~el~~-eE~~~~~ 79 (357)
|..+++.+|.+.=.|..||. +|...-+.|.|.......-+|-+|.+....|.. ++|.+.+
T Consensus 146 L~qlwr~~Q~l~l~LaeEr~Ry~rLQq~sD~qlD~lrqq~~~Lq~~L~~t~rKLEnLTdIERqL 209 (247)
T PRK10722 146 LYQLWRDGQALQLALAEERQRYQKLQQSSDSELDALRQQQQRLQYQLELTTRKLENLTDIERQL 209 (247)
T ss_pred HHHHHHHhhHHHHhHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 88999999999999999999 884444555565566888899999887776665 6665544
No 212
>PF09798 LCD1: DNA damage checkpoint protein; InterPro: IPR018622 This is a family of proteins which regulate checkpoint kinases. In Schizosaccharomyces pombe (Fission yeast) this protein is called Rad26 and in Saccharomyces cerevisiae (Baker's yeast) it is called LCD1 [].
Probab=41.92 E-value=84 Score=34.56 Aligned_cols=41 Identities=27% Similarity=0.412 Sum_probs=20.5
Q ss_pred HhhhhhhhhhHHHHHHHHHHh----hhhcccchhhHHHHHHHHHH
Q 018386 182 LQLSNNEKDETIAKLKTQIAQ----METGSKKWNTEISRLTQELE 222 (357)
Q Consensus 182 LQ~~nqeKDdeI~RLqak~ae----Me~~~Kkk~eeIs~L~~eLe 222 (357)
|+..+++|++|+.++.....+ .+-.....+.++++|+||=.
T Consensus 6 L~~Lq~ek~~E~~~l~~~~~~lk~~~~~el~~Lk~~vqkLEDEKK 50 (654)
T PF09798_consen 6 LELLQQEKQKERQALKSSVEELKESHEEELNKLKSEVQKLEDEKK 50 (654)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 444456666666666555432 22233344455555555543
No 213
>KOG0517 consensus Beta-spectrin [Cytoskeleton]
Probab=41.74 E-value=8.6e+02 Score=31.05 Aligned_cols=201 Identities=19% Similarity=0.239 Sum_probs=109.4
Q ss_pred HHHHHHHHHHHHHHHHHHH----------hhhhh------hhhhhhh---HHHHHHhHHhHHHH-HHH-HHHHHHhhhhh
Q 018386 28 QEQIETLVKEREILEDHLK----------MQHEK------WVSDVRL---YEDHISQMKSEIVA-QEL-IHLLDAAKSDM 86 (357)
Q Consensus 28 q~QvEsL~~ER~~LEa~ik----------~QhE~------W~sdv~~---lqdrLsqm~~el~~-eE~-~~~~EaAk~~l 86 (357)
+.-+++|++.+..|+.+|. .|.+. =-.+|+. -+++|++-+.+++. -.+ .++++.|=.=+
T Consensus 768 E~saq~LlkrH~~l~~El~a~~~~i~~L~eQa~~l~~~~~e~p~V~~~~~R~~~i~q~Y~El~~lA~lRrq~L~dalaLy 847 (2473)
T KOG0517|consen 768 EASAQALLKRHRDLEEELRAYRGDIDRLEEQASALPQESPEGPEVRQPLQRQDTISQDYEELQELAQLRRQRLEDALALY 847 (2473)
T ss_pred hHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccccCCCcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556788888888888772 11111 1226666 56666666665554 222 34444332111
Q ss_pred ---------hhchhhHHHHHHHHHhhhchhHHHHHHHHHHHHhcCCCCC------------------CcchhhHHhhhhh
Q 018386 87 ---------VVGLKLREASLLKLMLEYTDDQLADFMAWFDLLRQKPKDG------------------EPKSIEVSAFLDE 139 (357)
Q Consensus 87 ---------~LGlK~RE~~l~k~~lE~teDeL~DFka~~~~L~~~lke~------------------SeKdkEVsALlaE 139 (357)
-+=+++.|.-+-..-....-++++-|+-.|+.|-++++.. -..+.+|.+=+..
T Consensus 848 ~~~se~d~~ElWi~Eke~~L~~m~~~~~~E~vev~q~rFe~l~~eM~~~~~~v~~Vn~~a~qL~~~ghp~sd~I~~~Q~~ 927 (2473)
T KOG0517|consen 848 GFYSECDACELWIKEKEKWLATMSPPDSLEDVEVMQHRFEKLEQEMNTLAGRVAEVNDIARQLLEVGHPNSDEILARQDK 927 (2473)
T ss_pred HHHhhccHHHHHHHHHHHHHhccCCCCChhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHcCCCChHHHHHHHHH
Confidence 1112233322111112344578999999999999886652 3677788887778
Q ss_pred hhhhhhhhHhhhhhHHHhhhhhHHHHHHHHHHHHHHHHHHHHHhhhhhhhh-------------hHHHHHHHHHHhhhhc
Q 018386 140 RAFLWNQYKVMENDLTSKINSKRAEVDRANERIEKLLASTEQLQLSNNEKD-------------ETIAKLKTQIAQMETG 206 (357)
Q Consensus 140 KdFVWNQ~k~ME~Dyt~lLK~K~~EvaQAtE~iqKL~q~~EeLQ~~nqeKD-------------deI~RLqak~aeMe~~ 206 (357)
=|=-|+||..|=. .|+.+.+ +...++......++-++---+|- --+.-||-.+.-||.+
T Consensus 928 Ln~rW~~l~~l~~-------qk~~~L~-~a~~V~~f~~eC~et~~wi~dK~~~~e~t~~~~~Dl~gv~alqrrL~~lErd 999 (2473)
T KOG0517|consen 928 LNQRWQQLRELVD-------QKKVALE-SALRVETFHLECEETRVWIRDKTRVLESTDRLGNDLAGVMALQRRLQGLERD 999 (2473)
T ss_pred HHHHHHHHHHHHH-------HHHHHHH-HHHHHHHHHhhhHHHHHHHHHHHHHHHhccccCcchHHHHHHHHHHhhhhhH
Confidence 8888999986532 2222222 33344444444444333322220 1133556666666666
Q ss_pred ccchhhHHHHHHHHHHHHHhhcCCCCcccc
Q 018386 207 SKKWNTEISRLTQELELLRKSRTASDTPVL 236 (357)
Q Consensus 207 ~Kkk~eeIs~L~~eLe~lrk~r~a~~tpvl 236 (357)
+.-....+..|+.+-..+....-++--||-
T Consensus 1000 l~aie~kv~~L~~ea~~v~~~~Paea~~i~ 1029 (2473)
T KOG0517|consen 1000 LAAIEAKVAALEKEANKVEEEHPAEAQAIN 1029 (2473)
T ss_pred HHHHHHHHHHHHHHHHHHhhcChHHHHHHH
Confidence 666666666666666666665555544443
No 214
>TIGR02338 gimC_beta prefoldin, beta subunit, archaeal. Chaperonins are cytosolic, ATP-dependent molecular chaperones, with a conserved toroidal architecture, that assist in the folding of nascent and/or denatured polypeptide chains. The group I chaperonin system consists of GroEL and GroES, and is found (usually) in bacteria and organelles of bacterial origin. The group II chaperonin system, called the thermosome in Archaea and TRiC or CCT in the Eukaryota, is structurally similar but only distantly related. Prefoldin, also called GimC, is a complex in Archaea and Eukaryota, that works with group II chaperonins. Members of this protein family are the archaeal clade of the beta class of prefoldin subunit. Closely related, but outside the scope of this family are the eukaryotic beta-class prefoldin subunits, Gim-1,3,4 and 6. The alpha class prefoldin subunits are more distantly related.
Probab=41.24 E-value=2.1e+02 Score=23.76 Aligned_cols=41 Identities=27% Similarity=0.418 Sum_probs=34.7
Q ss_pred hhhhhHHHHHHHHHHhhhhcccchhhHHHHHHHHHHHHHhh
Q 018386 187 NEKDETIAKLKTQIAQMETGSKKWNTEISRLTQELELLRKS 227 (357)
Q Consensus 187 qeKDdeI~RLqak~aeMe~~~Kkk~eeIs~L~~eLe~lrk~ 227 (357)
+.+++-+..|+..+..|+...+..+..+..|...++.+++.
T Consensus 63 ~~~~e~~~~l~~r~e~ie~~i~~lek~~~~l~~~l~e~q~~ 103 (110)
T TIGR02338 63 TDKEEAIQELKEKKETLELRVKTLQRQEERLREQLKELQEK 103 (110)
T ss_pred ecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56888889999999999888888888888888888887764
No 215
>cd07596 BAR_SNX The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=41.20 E-value=2.1e+02 Score=24.65 Aligned_cols=77 Identities=16% Similarity=0.236 Sum_probs=48.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHhhhhcccchhhHHH----HHHHHHHHHHhhcCCCCcccc
Q 018386 161 KRAEVDRANERIEKLLASTEQLQLSNNEKDETIAKLKTQIAQMETGSKKWNTEIS----RLTQELELLRKSRTASDTPVL 236 (357)
Q Consensus 161 K~~EvaQAtE~iqKL~q~~EeLQ~~nqeKDdeI~RLqak~aeMe~~~Kkk~eeIs----~L~~eLe~lrk~r~a~~tpvl 236 (357)
+-.+..+|...+.+..+..+.|+....-+.+.|.+|+.++.+.+...+....+.. .+..||...-+.|...+...|
T Consensus 115 ~~~~~~~~~~~l~~k~~~~~kl~~~~~~~~~ki~~l~~~i~~~e~~~~~~~~~~~~i~~~~~~El~~f~~~~~~dlk~~l 194 (218)
T cd07596 115 ALLTLQSLKKDLASKKAQLEKLKAAPGIKPAKVEELEEELEEAESALEEARKRYEEISERLKEELKRFHEERARDLKAAL 194 (218)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445667777777888888888766655677888888888766655444444333 344556655555554444444
Q ss_pred c
Q 018386 237 N 237 (357)
Q Consensus 237 ~ 237 (357)
.
T Consensus 195 ~ 195 (218)
T cd07596 195 K 195 (218)
T ss_pred H
Confidence 3
No 216
>PF10018 Med4: Vitamin-D-receptor interacting Mediator subunit 4; InterPro: IPR019258 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. Members of this family represent the Med4 subunit of the Mediator (Med) complex [, ]. ; GO: 0001104 RNA polymerase II transcription cofactor activity, 0006357 regulation of transcription from RNA polymerase II promoter, 0016592 mediator complex
Probab=41.04 E-value=83 Score=28.45 Aligned_cols=73 Identities=19% Similarity=0.223 Sum_probs=38.5
Q ss_pred HHHHHHHHHHhhhhhhhhhHHHHHHHHHHhhhhcccchhhHHHHHHHHHHHHHhhcCCCCcc--cccccccccccccc
Q 018386 173 EKLLASTEQLQLSNNEKDETIAKLKTQIAQMETGSKKWNTEISRLTQELELLRKSRTASDTP--VLNRCTRIAGATTS 248 (357)
Q Consensus 173 qKL~q~~EeLQ~~nqeKDdeI~RLqak~aeMe~~~Kkk~eeIs~L~~eLe~lrk~r~a~~tp--vl~~ct~~~~~~~~ 248 (357)
+.+.+.+..|......+|..|..+..+|.+++...... +..-...+..+.+.....|++ +|+.-.+|+..+..
T Consensus 25 q~~~~~I~~L~~e~~~ld~~i~~~~~~L~~~~~~L~~~---~~~~~~~~~~~~~~~~~~v~~~eLL~YA~rISk~t~~ 99 (188)
T PF10018_consen 25 QENQARIQQLRAEIEELDEQIRDILKQLKEARKELRTL---PDQADEKLKSIPKAEKRPVDYEELLSYAHRISKFTSA 99 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHhhhccccccccccCCCCHHHHHHHHHHHHHhcCC
Confidence 44555555666666666666666666665333221111 111112223444455556666 78888887776665
No 217
>PRK08475 F0F1 ATP synthase subunit B; Validated
Probab=40.37 E-value=2.7e+02 Score=24.82 Aligned_cols=62 Identities=10% Similarity=0.073 Sum_probs=41.3
Q ss_pred hhhhhhhhHhhhhhHHHhhhhhHHHHHHHHHHHHHHHHHHHHH-hhhhhhhhhHHHHHHHHHH
Q 018386 140 RAFLWNQYKVMENDLTSKINSKRAEVDRANERIEKLLASTEQL-QLSNNEKDETIAKLKTQIA 201 (357)
Q Consensus 140 KdFVWNQ~k~ME~Dyt~lLK~K~~EvaQAtE~iqKL~q~~EeL-Q~~nqeKDdeI~RLqak~a 201 (357)
+-|+|.-+.-|=..-...+.+.-.+++++.+.++.+++..++. ..+..+-++.|...+.+..
T Consensus 40 ~~fl~kPi~~~l~~R~~~I~~~l~~Ae~~~~ea~~~~~e~e~~L~~Ar~eA~~Ii~~A~~eAe 102 (167)
T PRK08475 40 WYFAAKPLKNFYKSRINKISKRLEEIQEKLKESKEKKEDALKKLEEAKEKAELIVETAKKEAY 102 (167)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4489998876666666788888888888887777776665544 4555555555555555443
No 218
>cd07663 BAR_SNX5 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 5. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. SNX5, abundantly expressed in macrophages, regulates macropinocytosis, a process that enables cells to internalize large amounts of external solutes. It may also be a component of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi, acting as a mammalian equivalent of yeast Vsp17p. It
Probab=40.24 E-value=3.4e+02 Score=26.02 Aligned_cols=88 Identities=20% Similarity=0.247 Sum_probs=57.6
Q ss_pred HHhhhhhhhhhhhhhHhhhhhHHHhhhhhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHH---------HHhh
Q 018386 133 VSAFLDERAFLWNQYKVMENDLTSKINSKRAEVDRANERIEKLLASTEQLQLSNNEKDETIAKLKTQ---------IAQM 203 (357)
Q Consensus 133 VsALlaEKdFVWNQ~k~ME~Dyt~lLK~K~~EvaQAtE~iqKL~q~~EeLQ~~nqeKDdeI~RLqak---------~aeM 203 (357)
+.+|+.+|-=.|-.|..-++...-+ +-+..+|.+|.++.+.-.+.-|.+=.+.. .||.|.+.. +.++
T Consensus 121 ~K~ll~rR~ral~~~e~A~~~L~Ka-R~k~kev~~aE~~~~ea~~~Fe~IS~~~k---~El~rF~~~Rv~~Fk~~lve~~ 196 (218)
T cd07663 121 AKDLLYRRARALADYENSNKALDKA-RLKSKDVKQAEAHQQECCQKFEKLSESAK---QELISFKRRRVAAFRKNLIEMT 196 (218)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-HhhhhhHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHH
Confidence 4578888888899998888887743 33556677776665555555555433332 355555544 4477
Q ss_pred hhcccchhhHHHHHHHHHHHH
Q 018386 204 ETGSKKWNTEISRLTQELELL 224 (357)
Q Consensus 204 e~~~Kkk~eeIs~L~~eLe~l 224 (357)
|...|-.++.++-|..=+..+
T Consensus 197 E~~ik~ak~~~~~~~~~~~~~ 217 (218)
T cd07663 197 ELEIKHAKNNVSLLQSCIDLF 217 (218)
T ss_pred HHHHHHHHHHHHHHHHHHHhc
Confidence 888888888888877666543
No 219
>KOG4398 consensus Predicted coiled-coil protein [General function prediction only]
Probab=40.21 E-value=55 Score=33.31 Aligned_cols=78 Identities=23% Similarity=0.265 Sum_probs=44.4
Q ss_pred hhhhhHHHhhhhhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHhhhhcccchhhHHHHHHHHHHHHHhhc
Q 018386 149 VMENDLTSKINSKRAEVDRANERIEKLLASTEQLQLSNNEKDETIAKLKTQIAQMETGSKKWNTEISRLTQELELLRKSR 228 (357)
Q Consensus 149 ~ME~Dyt~lLK~K~~EvaQAtE~iqKL~q~~EeLQ~~nqeKDdeI~RLqak~aeMe~~~Kkk~eeIs~L~~eLe~lrk~r 228 (357)
-||.+--+++|.| |+-|||..- +|+ -|||-|+|.|-++|+- -+++++..-.----..|++||.+-
T Consensus 20 e~~~~~~~~~k~~--------e~~qkl~sr---~~~-~~ekke~i~r~n~k~~---d~v~~~~~~~~~~~erl~~lr~sh 84 (359)
T KOG4398|consen 20 EMEKNSEGLLKTK--------EKNQKLYSR---AQR-HQEKKEKIQRHNRKLG---DLVEKKTIDLRSHYERLANLRRSH 84 (359)
T ss_pred HHHHhHHHHHHHH--------HHHHHHHHH---HHH-HHHHHHHHHHhhhhcc---hHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3666666666664 334555553 333 3577788888888642 333333222212223578888888
Q ss_pred CCCCccccccccc
Q 018386 229 TASDTPVLNRCTR 241 (357)
Q Consensus 229 ~a~~tpvl~~ct~ 241 (357)
--++|.|+-+--+
T Consensus 85 i~el~s~ifpi~e 97 (359)
T KOG4398|consen 85 ILELTSVIFPIEE 97 (359)
T ss_pred HHHHHheeeeHHH
Confidence 7777877665444
No 220
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=40.11 E-value=4.6e+02 Score=27.45 Aligned_cols=71 Identities=17% Similarity=0.149 Sum_probs=37.0
Q ss_pred hhHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhh--hhhhHHHHHHhHHhHHHHHHHHHHHHHhhh
Q 018386 11 LERQKRDKI--LVKMLKSQQEQIETLVKEREILEDHLKMQHEKWVS--DVRLYEDHISQMKSEIVAQELIHLLDAAKS 84 (357)
Q Consensus 11 s~r~~W~ri--LVkMLr~~q~QvEsL~~ER~~LEa~ik~QhE~W~s--dv~~lqdrLsqm~~el~~eE~~~~~EaAk~ 84 (357)
.++..|..+ +-+-|++.+.+...+..+.++|...|+...+.-.. ...-++..+..+. ..+++...+..|..
T Consensus 162 ~~~~~~~~~~~~~~~L~~l~~~~~~~~~eld~L~~ql~ELe~~~l~~~E~e~L~~e~~~L~---n~e~i~~~~~~~~~ 236 (563)
T TIGR00634 162 AYRELYQAWLKARQQLKDRQQKEQELAQRLDFLQFQLEELEEADLQPGEDEALEAEQQRLS---NLEKLRELSQNALA 236 (563)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhCCcCCCcHHHHHHHHHHHh---CHHHHHHHHHHHHH
Confidence 344445444 55556666666677777777777666554443322 2223333433333 24555555554433
No 221
>PF07334 IFP_35_N: Interferon-induced 35 kDa protein (IFP 35) N-terminus; InterPro: IPR009938 This entry represents the N terminus of interferon-induced 35 kDa protein (IFP 35) (approximately 80 residues long), which contains a leucine zipper motif in an alpha helical configuration []. This group of proteins also includes N-myc-interactor (Nmi), a homologous interferon-induced protein.
Probab=40.02 E-value=47 Score=27.38 Aligned_cols=19 Identities=26% Similarity=0.478 Sum_probs=16.1
Q ss_pred chhhHHHHHHHHHHHHHhh
Q 018386 209 KWNTEISRLTQELELLRKS 227 (357)
Q Consensus 209 kk~eeIs~L~~eLe~lrk~ 227 (357)
..+.||.+|+.|||.+++.
T Consensus 11 ~Lk~eiqkle~ELq~~~~~ 29 (76)
T PF07334_consen 11 RLKEEIQKLEAELQQNKRE 29 (76)
T ss_pred HHHHHHHHHHHHHHHHHhh
Confidence 5588999999999998765
No 222
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=39.87 E-value=1.2e+02 Score=23.72 Aligned_cols=42 Identities=29% Similarity=0.500 Sum_probs=22.8
Q ss_pred HHHHHhhhhhhhhhHHHHHHHHHHhhhhcccchhhHHHHHHHHHHHHHh
Q 018386 178 STEQLQLSNNEKDETIAKLKTQIAQMETGSKKWNTEISRLTQELELLRK 226 (357)
Q Consensus 178 ~~EeLQ~~nqeKDdeI~RLqak~aeMe~~~Kkk~eeIs~L~~eLe~lrk 226 (357)
-++.|+.-----++.|..|..-++ .-..+|.+|+..|+.|+.
T Consensus 5 Ri~~LE~~la~qe~~ie~Ln~~v~-------~Qq~~I~~L~~~l~~L~~ 46 (69)
T PF04102_consen 5 RIEELEIKLAFQEDTIEELNDVVT-------EQQRQIDRLQRQLRLLRE 46 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHH
Confidence 344444433334666666666666 344556666666665554
No 223
>TIGR03545 conserved hypothetical protein TIGR03545. This model represents a relatively rare but broadly distributed uncharacterized protein family, distributed in 1-2 percent of bacterial genomes, all of which have outer membranes. In many of these genomes, it is part of a two-gene pair.
Probab=39.61 E-value=1.3e+02 Score=32.14 Aligned_cols=17 Identities=18% Similarity=0.298 Sum_probs=8.2
Q ss_pred chhhHHhhhhhhhhhhh
Q 018386 129 KSIEVSAFLDERAFLWN 145 (357)
Q Consensus 129 KdkEVsALlaEKdFVWN 145 (357)
.-.++.+.+.++-=-|+
T Consensus 165 ~~~~~~~~~k~~~~~w~ 181 (555)
T TIGR03545 165 TAEEIEKSLKAMQQKWK 181 (555)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33444444445544555
No 224
>TIGR02338 gimC_beta prefoldin, beta subunit, archaeal. Chaperonins are cytosolic, ATP-dependent molecular chaperones, with a conserved toroidal architecture, that assist in the folding of nascent and/or denatured polypeptide chains. The group I chaperonin system consists of GroEL and GroES, and is found (usually) in bacteria and organelles of bacterial origin. The group II chaperonin system, called the thermosome in Archaea and TRiC or CCT in the Eukaryota, is structurally similar but only distantly related. Prefoldin, also called GimC, is a complex in Archaea and Eukaryota, that works with group II chaperonins. Members of this protein family are the archaeal clade of the beta class of prefoldin subunit. Closely related, but outside the scope of this family are the eukaryotic beta-class prefoldin subunits, Gim-1,3,4 and 6. The alpha class prefoldin subunits are more distantly related.
Probab=39.50 E-value=2.2e+02 Score=23.59 Aligned_cols=100 Identities=19% Similarity=0.287 Sum_probs=59.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhHHHHHHhHHhHHHHHHHHHHHHHhhhhhhhchhhHHHHHHH
Q 018386 20 LVKMLKSQQEQIETLVKEREILEDHLKMQHEKWVSDVRLYEDHISQMKSEIVAQELIHLLDAAKSDMVVGLKLREASLLK 99 (357)
Q Consensus 20 LVkMLr~~q~QvEsL~~ER~~LEa~ik~QhE~W~sdv~~lqdrLsqm~~el~~eE~~~~~EaAk~~l~LGlK~RE~~l~k 99 (357)
++..++.-+.++..+...+..|+..+..- ++..+++...-+.++.=-+.|.
T Consensus 8 ~~~~~q~~q~~~~~l~~q~~~le~~~~E~--------------------~~v~~eL~~l~~d~~vyk~VG~--------- 58 (110)
T TIGR02338 8 QLAQLQQLQQQLQAVATQKQQVEAQLKEA--------------------EKALEELERLPDDTPVYKSVGN--------- 58 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------------HHHHHHHHcCCCcchhHHHhch---------
Confidence 56677777777777777777776655321 1122333333333333333333
Q ss_pred HHhhhchhHH-HHHHHHHHHHhcCCCCCCcchhhHHhhhhhhhhhhhhhHhhhhhHHHhh
Q 018386 100 LMLEYTDDQL-ADFMAWFDLLRQKPKDGEPKSIEVSAFLDERAFLWNQYKVMENDLTSKI 158 (357)
Q Consensus 100 ~~lE~teDeL-~DFka~~~~L~~~lke~SeKdkEVsALlaEKdFVWNQ~k~ME~Dyt~lL 158 (357)
-+.+.+-+|+ .++...+.++ +..|.+|-....++=.+|+-|++.+..+|
T Consensus 59 vlv~~~~~e~~~~l~~r~e~i----------e~~i~~lek~~~~l~~~l~e~q~~l~~~~ 108 (110)
T TIGR02338 59 LLVKTDKEEAIQELKEKKETL----------ELRVKTLQRQEERLREQLKELQEKIQEAL 108 (110)
T ss_pred hhheecHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3555566664 7888888887 56666776677777777777777766554
No 225
>PF15397 DUF4618: Domain of unknown function (DUF4618)
Probab=39.40 E-value=2.7e+02 Score=27.47 Aligned_cols=92 Identities=18% Similarity=0.267 Sum_probs=0.0
Q ss_pred HHhhhhhhhhhhhhhHhhhhhHHHhhhhhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHH----hhhhccc
Q 018386 133 VSAFLDERAFLWNQYKVMENDLTSKINSKRAEVDRANERIEKLLASTEQLQLSNNEKDETIAKLKTQIA----QMETGSK 208 (357)
Q Consensus 133 VsALlaEKdFVWNQ~k~ME~Dyt~lLK~K~~EvaQAtE~iqKL~q~~EeLQ~~nqeKDdeI~RLqak~a----eMe~~~K 208 (357)
|.+||---+..=+=..++|.-+...|..-+.|...+.|+..+ .+..||.....=+.+|...+.++. ||.-+-=
T Consensus 40 Vr~lLqqy~~~~~~i~~le~~~~~~l~~ak~eLqe~eek~e~---~l~~Lq~ql~~l~akI~k~~~el~~L~TYkD~EYP 116 (258)
T PF15397_consen 40 VRKLLQQYDIYRTAIDILEYSNHKQLQQAKAELQEWEEKEES---KLSKLQQQLEQLDAKIQKTQEELNFLSTYKDHEYP 116 (258)
T ss_pred HHHHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHHHHh---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q ss_pred chhhHHHHHHHHHHHHHhh
Q 018386 209 KWNTEISRLTQELELLRKS 227 (357)
Q Consensus 209 kk~eeIs~L~~eLe~lrk~ 227 (357)
-+-=.|..|...|+.++.+
T Consensus 117 vK~vqIa~L~rqlq~lk~~ 135 (258)
T PF15397_consen 117 VKAVQIANLVRQLQQLKDS 135 (258)
T ss_pred HHHHHHHHHHHHHHHHHHH
No 226
>PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules. The human TACC proteins have been linked to cancer and TACC2 has been identified as a possible tumour suppressor (AZU-1) [].
Probab=39.35 E-value=3.4e+02 Score=25.75 Aligned_cols=58 Identities=14% Similarity=0.233 Sum_probs=27.0
Q ss_pred hHhhhhhHHHhhhhhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHhhhhcccchhhHH
Q 018386 147 YKVMENDLTSKINSKRAEVDRANERIEKLLASTEQLQLSNNEKDETIAKLKTQIAQMETGSKKWNTEI 214 (357)
Q Consensus 147 ~k~ME~Dyt~lLK~K~~EvaQAtE~iqKL~q~~EeLQ~~nqeKDdeI~RLqak~aeMe~~~Kkk~eeI 214 (357)
++..|+-|-.+=..-+-....||+.|..+.... ..++..|+|.+..++.-..-..+.+
T Consensus 127 l~~~eqry~aLK~hAeekL~~ANeei~~v~~~~----------~~e~~aLqa~lkk~e~~~~SLe~~L 184 (207)
T PF05010_consen 127 LKKEEQRYQALKAHAEEKLEKANEEIAQVRSKH----------QAELLALQASLKKEEMKVQSLEESL 184 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----------HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555333333334455555555554443 3455666666554443333333333
No 227
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]
Probab=39.33 E-value=5.6e+02 Score=28.18 Aligned_cols=81 Identities=23% Similarity=0.389 Sum_probs=40.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhhh---hhhhHHHHHHhHHhHHHHHHHHHHHHHhhhhhhhchhhHHHHHHHHHhh
Q 018386 27 QQEQIETLVKEREILEDHLKMQHEKWVS---DVRLYEDHISQMKSEIVAQELIHLLDAAKSDMVVGLKLREASLLKLMLE 103 (357)
Q Consensus 27 ~q~QvEsL~~ER~~LEa~ik~QhE~W~s---dv~~lqdrLsqm~~el~~eE~~~~~EaAk~~l~LGlK~RE~~l~k~~lE 103 (357)
+-+-++.-..+=.-+-.-|+...+.|+. |.--|++-..+|.. +.++..-.++ -++.=.|
T Consensus 279 ~n~~l~e~i~ea~k~s~~i~~l~ek~r~l~~D~nk~~~~~~~mk~--K~~~~~g~l~----------------kl~~eie 340 (622)
T COG5185 279 QNDNLYEKIQEAMKISQKIKTLREKWRALKSDSNKYENYVNAMKQ--KSQEWPGKLE----------------KLKSEIE 340 (622)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH--HHHhcchHHH----------------HHHHHHH
Confidence 3333333344444444455666777764 55556665555553 1122111111 1222334
Q ss_pred hchhHHHHHHHHHHHHhcCCCC
Q 018386 104 YTDDQLADFMAWFDLLRQKPKD 125 (357)
Q Consensus 104 ~teDeL~DFka~~~~L~~~lke 125 (357)
..|.+|..+++.++.|...+..
T Consensus 341 ~kEeei~~L~~~~d~L~~q~~k 362 (622)
T COG5185 341 LKEEEIKALQSNIDELHKQLRK 362 (622)
T ss_pred HHHHHHHHHHhhHHHHHHHHHh
Confidence 5556777777777777776443
No 228
>PRK10869 recombination and repair protein; Provisional
Probab=39.23 E-value=4.9e+02 Score=27.54 Aligned_cols=72 Identities=14% Similarity=0.134 Sum_probs=32.7
Q ss_pred hHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhh--hhhhHHHHHHhHHhHHHHHHHHHHHHHhhhhh
Q 018386 12 ERQKRDKI--LVKMLKSQQEQIETLVKEREILEDHLKMQHEKWVS--DVRLYEDHISQMKSEIVAQELIHLLDAAKSDM 86 (357)
Q Consensus 12 ~r~~W~ri--LVkMLr~~q~QvEsL~~ER~~LEa~ik~QhE~W~s--dv~~lqdrLsqm~~el~~eE~~~~~EaAk~~l 86 (357)
++..|... +.+-|..-+.+......++++|.-.++...+.-.. ...-++..+..+. ..+++...+..|...|
T Consensus 159 ~~~~y~~~~~~~~~l~~l~~~~~~~~~~~d~l~fql~Ei~~~~l~~gE~eeL~~e~~~L~---n~e~i~~~~~~~~~~L 234 (553)
T PRK10869 159 MRAAYQLWHQSCRDLAQHQQQSQERAARKQLLQYQLKELNEFAPQPGEFEQIDEEYKRLA---NSGQLLTTSQNALQLL 234 (553)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHH---HHHHHHHHHHHHHHHh
Confidence 33444444 44445555555555555555555444333222211 2223333333333 2466666666555444
No 229
>KOG0239 consensus Kinesin (KAR3 subfamily) [Cytoskeleton]
Probab=38.87 E-value=1.5e+02 Score=32.45 Aligned_cols=37 Identities=24% Similarity=0.389 Sum_probs=21.1
Q ss_pred hhHHHHHHHHHHhhhhcccchhhHHHHHHHHHHHHHh
Q 018386 190 DETIAKLKTQIAQMETGSKKWNTEISRLTQELELLRK 226 (357)
Q Consensus 190 DdeI~RLqak~aeMe~~~Kkk~eeIs~L~~eLe~lrk 226 (357)
+.+|..|+.++.++....+..++..+.+..+++...+
T Consensus 240 ~~~i~~l~~~l~~l~~~~~~l~~~~~~~~~~~~~~~~ 276 (670)
T KOG0239|consen 240 KKKIQALQQELEELKAELKELNDQVSLLTREVQEALK 276 (670)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3346666666666666655666666655555554443
No 230
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=38.85 E-value=1.4e+02 Score=27.50 Aligned_cols=24 Identities=21% Similarity=0.385 Sum_probs=15.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHh
Q 018386 160 SKRAEVDRANERIEKLLASTEQLQ 183 (357)
Q Consensus 160 ~K~~EvaQAtE~iqKL~q~~EeLQ 183 (357)
.-..+++...+.++.|...++.+.
T Consensus 73 ~l~~~~~~~~~~i~~l~~~i~~~~ 96 (188)
T PF03962_consen 73 KLQKEIEELEKKIEELEEKIEEAK 96 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334566666667777777776664
No 231
>PF07058 Myosin_HC-like: Myosin II heavy chain-like; InterPro: IPR009768 This family represents a conserved region within a number of myosin II heavy chain-like proteins that seem to be specific to Arabidopsis thaliana.
Probab=38.85 E-value=1.6e+02 Score=30.29 Aligned_cols=58 Identities=21% Similarity=0.449 Sum_probs=43.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH------------------------hhhhhhhhhhhhHHHHHHhHHhHHHHHHHHHH
Q 018386 23 MLKSQQEQIETLVKEREILEDHLK------------------------MQHEKWVSDVRLYEDHISQMKSEIVAQELIHL 78 (357)
Q Consensus 23 MLr~~q~QvEsL~~ER~~LEa~ik------------------------~QhE~W~sdv~~lqdrLsqm~~el~~eE~~~~ 78 (357)
-.|--|.|+.+|-.|+..||.+|. |=--.|++.-|.+|+-+++.+..|-.-|-...
T Consensus 60 avrdYqrq~~elneEkrtLeRELARaKV~aNRVA~vvANEWKD~nDkvMPVKqWLEERR~lQgEmQ~LrDKLAiaERtAk 139 (351)
T PF07058_consen 60 AVRDYQRQVQELNEEKRTLERELARAKVSANRVATVVANEWKDENDKVMPVKQWLEERRFLQGEMQQLRDKLAIAERTAK 139 (351)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhcccccccCCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456778899999999999999981 22234999999999999998866655554333
Q ss_pred HH
Q 018386 79 LD 80 (357)
Q Consensus 79 ~E 80 (357)
.|
T Consensus 140 aE 141 (351)
T PF07058_consen 140 AE 141 (351)
T ss_pred HH
Confidence 33
No 232
>TIGR01554 major_cap_HK97 phage major capsid protein, HK97 family. This family represents the major capsid protein component of the heads (capsids) of bacteriophage HK97, phi-105, P27, and related phage. This model represents one of several analogous families lacking detectable sequence similarity. The gene encoding this component is typically located in an operon encoding the small and large terminase subunits, the portal protein and the prohead or maturation protease.
Probab=38.61 E-value=92 Score=30.45 Aligned_cols=20 Identities=30% Similarity=0.336 Sum_probs=8.1
Q ss_pred HHHHHHHHHHHHHHHHHHHh
Q 018386 164 EVDRANERIEKLLASTEQLQ 183 (357)
Q Consensus 164 EvaQAtE~iqKL~q~~EeLQ 183 (357)
++.++.+.+.+|..-.+.+.
T Consensus 28 ~~~~~~~~~~~l~~~~~~~~ 47 (378)
T TIGR01554 28 ELTAAALEKEELETDVEKLK 47 (378)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33333333444444444443
No 233
>PF12240 Angiomotin_C: Angiomotin C terminal; InterPro: IPR024646 This domain represents the C-terminal region of angiomotin. Angiomotin regulates the action of angiogenesis-inhibitor angiostatin []. The C-terminal region of angiomotin appears to be involved in directing the protein chemotactically [].
Probab=38.61 E-value=2.7e+02 Score=26.89 Aligned_cols=40 Identities=25% Similarity=0.381 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhHH
Q 018386 21 VKMLKSQQEQIETLVKEREILEDHLKMQHEKWVSDVRLYE 60 (357)
Q Consensus 21 VkMLr~~q~QvEsL~~ER~~LEa~ik~QhE~W~sdv~~lq 60 (357)
|-=|++.=+|+-.-+.-|+.||-++..+.|+=+.-.|.-|
T Consensus 5 v~~LQ~AL~~LQaa~ekRE~lE~rLR~~lE~EL~~lr~qq 44 (205)
T PF12240_consen 5 VERLQQALAQLQAACEKREQLERRLRTRLERELESLRAQQ 44 (205)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4457888888999999999999999999886655444333
No 234
>PF11221 Med21: Subunit 21 of Mediator complex; InterPro: IPR021384 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. Med21 has been known as Srb7 in yeasts, hSrb7 in humans and Trap 19 in Drosophila. The heterodimer of the two subunits Med7 and Med21 appears to act as a hinge between the middle and the tail regions of Mediator []. ; PDB: 1YKE_B 1YKH_B.
Probab=38.57 E-value=1.5e+02 Score=25.87 Aligned_cols=106 Identities=20% Similarity=0.258 Sum_probs=52.0
Q ss_pred hHH-HHHHHHHHHHhcC--CCCCCcchhhHHhhhh---------------hhhhhhhhhHhhhhhHHHhhhhhHHHHHHH
Q 018386 107 DQL-ADFMAWFDLLRQK--PKDGEPKSIEVSAFLD---------------ERAFLWNQYKVMENDLTSKINSKRAEVDRA 168 (357)
Q Consensus 107 DeL-~DFka~~~~L~~~--lke~SeKdkEVsALla---------------EKdFVWNQ~k~ME~Dyt~lLK~K~~EvaQA 168 (357)
|.| ..|-++|.+|... +...+..+..++..-+ ...=++++.+.|=.|... |.
T Consensus 13 dqL~~~f~~si~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~elA~dIi~--ka-------- 82 (144)
T PF11221_consen 13 DQLAEQFCNSIGYLQRDAPPSPLSPNDPSISDPKPQAPPQQQQQAEPAPDPPEEFEENIKELATDIIR--KA-------- 82 (144)
T ss_dssp HHHHHHHHHHHHHHHHTTGGGG-----------------------------HHHHHHHHHHHHHHHHH--HH--------
T ss_pred HHHHHHHHHHHhhhccCCCCCCCCCCcccccCccccchhhhhhhhcccCCChhhHHHHHHHHHHHHHH--HH--------
Confidence 565 7899999999876 2222222222222211 233445666666555542 22
Q ss_pred HHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHhhhhcccchhhHHHHHHHHHHH
Q 018386 169 NERIEKLLASTEQLQLSNNEKDETIAKLKTQIAQMETGSKKWNTEISRLTQELEL 223 (357)
Q Consensus 169 tE~iqKL~q~~EeLQ~~nqeKDdeI~RLqak~aeMe~~~Kkk~eeIs~L~~eLe~ 223 (357)
-.|..|...+=.+.++..+=...|.+|+.++.+.+....++=.|-..|-..++.
T Consensus 83 -kqIe~LIdsLPg~~~see~Q~~~i~~L~~E~~~~~~el~~~v~e~e~ll~~v~~ 136 (144)
T PF11221_consen 83 -KQIEYLIDSLPGIEVSEEEQLKRIKELEEENEEAEEELQEAVKEAEELLKQVQE 136 (144)
T ss_dssp -HHHHHHHHHSTTSSS-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -HHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 234455555444444444446677777777776665555544444444444443
No 235
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=38.53 E-value=1.4e+02 Score=31.56 Aligned_cols=66 Identities=20% Similarity=0.248 Sum_probs=40.6
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHhhhhhh-----hhh--HHHHHHHHHHhhhhcccchhhHHHHHHHHHHHH
Q 018386 159 NSKRAEVDRANERIEKLLASTEQLQLSNNE-----KDE--TIAKLKTQIAQMETGSKKWNTEISRLTQELELL 224 (357)
Q Consensus 159 K~K~~EvaQAtE~iqKL~q~~EeLQ~~nqe-----KDd--eI~RLqak~aeMe~~~Kkk~eeIs~L~~eLe~l 224 (357)
+..+.++++..+.|++|.+..++|+..-.. ..+ .+..|..++.+.+....++-++-..|+.+|+.+
T Consensus 559 ~~~~~~~~~~e~~i~~le~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~w~~l~~~~~~~ 631 (638)
T PRK10636 559 QPLRKEIARLEKEMEKLNAQLAQAEEKLGDSELYDQSRKAELTACLQQQASAKSGLEECEMAWLEAQEQLEQM 631 (638)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444445666677777777777666533221 112 577777777766666666666666777666655
No 236
>PF04880 NUDE_C: NUDE protein, C-terminal conserved region; InterPro: IPR006964 This domain represents the C-terminal conserved region of NUDE proteins. Emericella nidulans (Aspergillus nidulans) NUDE, acts in the cytoplasmic dynein/dynactin pathway and is required for distribution of nuclei []. It is a homologue of the nuclear distribution protein RO11 of Neurospora crassa. NUDE interacts with the NUDF via an N-terminal coiled coil domain; this is the only domain which is absolutely required for NUDE function.; PDB: 2V66_B 2V71_B.
Probab=38.46 E-value=47 Score=30.64 Aligned_cols=14 Identities=29% Similarity=0.190 Sum_probs=9.0
Q ss_pred HHHHHHHHHHHHHH
Q 018386 166 DRANERIEKLLAST 179 (357)
Q Consensus 166 aQAtE~iqKL~q~~ 179 (357)
-||.|...=|...+
T Consensus 10 N~AIERnalLE~EL 23 (166)
T PF04880_consen 10 NQAIERNALLESEL 23 (166)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHhHHHHHHH
Confidence 46777766666555
No 237
>KOG0992 consensus Uncharacterized conserved protein [Function unknown]
Probab=38.44 E-value=5.8e+02 Score=28.15 Aligned_cols=36 Identities=31% Similarity=0.578 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhhhhhh-hHHHHHHhH
Q 018386 30 QIETLVKEREILEDHLKMQHEKWVSDVR-LYEDHISQM 66 (357)
Q Consensus 30 QvEsL~~ER~~LEa~ik~QhE~W~sdv~-~lqdrLsqm 66 (357)
|+-.+..+|+.|+.++.-.|.- .++|. .+.+++...
T Consensus 232 Qlq~~~~ehkllee~~~rl~~~-~s~VegS~S~~~l~~ 268 (613)
T KOG0992|consen 232 QLQALIREHKLLEEHLERLHLQ-LSDVEGSWSGQNLAL 268 (613)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-HhhcccccchhHHHH
Confidence 6999999999999988766652 33554 666666553
No 238
>cd07664 BAR_SNX2 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 2. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. SNX2 is a component of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi. The retromer consists of a cargo-recognition subcomplex and a subcomplex formed by a dimer of sorting nexins (SNX1 and/or SNX2), which ensures effcient cargo sorting by facilitating proper membrane localization
Probab=38.41 E-value=3.6e+02 Score=25.72 Aligned_cols=23 Identities=22% Similarity=0.488 Sum_probs=15.4
Q ss_pred HHhhhhhhhhhhhhhHhhhhhHH
Q 018386 133 VSAFLDERAFLWNQYKVMENDLT 155 (357)
Q Consensus 133 VsALlaEKdFVWNQ~k~ME~Dyt 155 (357)
|.+++..|-=+|.+|...++++.
T Consensus 121 vK~~f~~R~k~~~~~~~a~~~L~ 143 (234)
T cd07664 121 VKGVFDQRMKCWQKWQDAQVTLQ 143 (234)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 44566666667888877777665
No 239
>PF09325 Vps5: Vps5 C terminal like; InterPro: IPR015404 Vps5 is a sorting nexin that functions in membrane trafficking. This is the C-terminal dimerisation domain [].
Probab=38.39 E-value=2.9e+02 Score=24.61 Aligned_cols=26 Identities=27% Similarity=0.335 Sum_probs=22.1
Q ss_pred hHHhhhhhhhhhhhhhHhhhhhHHHh
Q 018386 132 EVSAFLDERAFLWNQYKVMENDLTSK 157 (357)
Q Consensus 132 EVsALlaEKdFVWNQ~k~ME~Dyt~l 157 (357)
-|.+.|..|+-+|-+|..+++++..+
T Consensus 122 svk~~l~~R~~~~~~~~~a~~~l~kk 147 (236)
T PF09325_consen 122 SVKEALNRRDKKLIEYQNAEKELQKK 147 (236)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 47788999999999999999887743
No 240
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=38.37 E-value=4.3e+02 Score=26.61 Aligned_cols=29 Identities=24% Similarity=0.131 Sum_probs=16.6
Q ss_pred HHHHHHhhhchhHHHHHHHHHHHHhcCCC
Q 018386 96 SLLKLMLEYTDDQLADFMAWFDLLRQKPK 124 (357)
Q Consensus 96 ~l~k~~lE~teDeL~DFka~~~~L~~~lk 124 (357)
.-++..+.....++.+.++.++.|...+.
T Consensus 207 ~~l~~~l~~~~~~l~~~~a~~~~l~~~l~ 235 (498)
T TIGR03007 207 SEAQEELEAARLELNEAIAQRDALKRQLG 235 (498)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 33344444455566667777777766544
No 241
>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms. The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.
Probab=38.29 E-value=11 Score=40.39 Aligned_cols=99 Identities=23% Similarity=0.318 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHhcCCCCC-CcchhhHHhhhhhhhhhhhhhHhhhhhHHHhhhhhHHHHHHHHHHHHHHHHHHHHHhhh
Q 018386 107 DQLADFMAWFDLLRQKPKDG-EPKSIEVSAFLDERAFLWNQYKVMENDLTSKINSKRAEVDRANERIEKLLASTEQLQLS 185 (357)
Q Consensus 107 DeL~DFka~~~~L~~~lke~-SeKdkEVsALlaEKdFVWNQ~k~ME~Dyt~lLK~K~~EvaQAtE~iqKL~q~~EeLQ~~ 185 (357)
+++...+..|..|...+... +.|-.++.+-|..|+ .+++.||..|... +..|.+-|..|...+..
T Consensus 554 ~e~~~~~~~le~l~~~~~~~~~~ki~~Le~~L~~k~---~e~~~~eer~k~~-------lekak~vi~~Ld~k~~~---- 619 (713)
T PF05622_consen 554 DELQKKREQLEELEQELNQSLSQKIEELEEALQKKE---EEMRAMEERYKKY-------LEKAKEVIKTLDPKQNP---- 619 (713)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhH---HHHHhHHHHHHHH-------HHHHHHHhhccChhccC----
Confidence 44555555565555555443 556666666666666 4777777767432 22343333333322221
Q ss_pred hhhhhhHHHHHHHHHHhhhhcccchhhHHHHHHHHHHHHHhhcC
Q 018386 186 NNEKDETIAKLKTQIAQMETGSKKWNTEISRLTQELELLRKSRT 229 (357)
Q Consensus 186 nqeKDdeI~RLqak~aeMe~~~Kkk~eeIs~L~~eLe~lrk~r~ 229 (357)
-..+|.-|+..+. +++..|..|+.+++..+..|-
T Consensus 620 ---~~~e~~~L~~ql~-------e~~~~i~~lE~~~e~~k~~~~ 653 (713)
T PF05622_consen 620 ---SSPEIQALKKQLQ-------EKDRRIESLEKELEKSKQMRE 653 (713)
T ss_dssp --------------------------------------------
T ss_pred ---ChHHHHHHHHHHH-------HHHHHHHHHHHHhhhhhhHHH
Confidence 2344555555554 777788888888877765553
No 242
>PRK14139 heat shock protein GrpE; Provisional
Probab=38.17 E-value=38 Score=31.49 Aligned_cols=31 Identities=13% Similarity=0.147 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHhhhhhhhhhHHHHHHHHHH
Q 018386 171 RIEKLLASTEQLQLSNNEKDETIAKLKTQIA 201 (357)
Q Consensus 171 ~iqKL~q~~EeLQ~~nqeKDdeI~RLqak~a 201 (357)
.+..|.+.++.|+....+-.|...|++|++.
T Consensus 33 e~~~l~~~l~~le~e~~elkd~~lR~~Aefe 63 (185)
T PRK14139 33 AAPALEAELAEAEAKAAELQDSFLRAKAETE 63 (185)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455666666666555555667777777663
No 243
>PRK00846 hypothetical protein; Provisional
Probab=38.08 E-value=1.1e+02 Score=25.08 Aligned_cols=55 Identities=16% Similarity=0.198 Sum_probs=35.3
Q ss_pred HHHHHHHHHhhhhhhhhhHHHHHHHHHHhhhhcccchhhHHHHHHHHHHHHHhhc
Q 018386 174 KLLASTEQLQLSNNEKDETIAKLKTQIAQMETGSKKWNTEISRLTQELELLRKSR 228 (357)
Q Consensus 174 KL~q~~EeLQ~~nqeKDdeI~RLqak~aeMe~~~Kkk~eeIs~L~~eLe~lrk~r 228 (357)
.+.+-++.|++-.--=++.|..|..-+++...........+..|.+.|..+..+-
T Consensus 10 ~le~Ri~~LE~rlAfQe~tIe~LN~~v~~qq~~I~~L~~ql~~L~~rL~~~~~s~ 64 (77)
T PRK00846 10 ALEARLVELETRLSFQEQALTELSEALADARLTGARNAELIRHLLEDLGKVRSTL 64 (77)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 3445566666544444778888888887665555566666666666666666543
No 244
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=37.56 E-value=68 Score=26.78 Aligned_cols=33 Identities=24% Similarity=0.333 Sum_probs=17.3
Q ss_pred hhHHHHHHHHHHhhhhcccchhhHHHHHHHHHHHHHhhcC
Q 018386 190 DETIAKLKTQIAQMETGSKKWNTEISRLTQELELLRKSRT 229 (357)
Q Consensus 190 DdeI~RLqak~aeMe~~~Kkk~eeIs~L~~eLe~lrk~r~ 229 (357)
=|+|.=||.++. +.++....|.++.+.++.+|.
T Consensus 17 vdtI~LLqmEie-------ELKekn~~L~~e~~~~~~~r~ 49 (79)
T PRK15422 17 IDTITLLQMEIE-------ELKEKNNSLSQEVQNAQHQRE 49 (79)
T ss_pred HHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHhhHH
Confidence 455555555555 444445555555555555543
No 245
>PF13514 AAA_27: AAA domain
Probab=37.11 E-value=6.8e+02 Score=28.54 Aligned_cols=23 Identities=26% Similarity=0.351 Sum_probs=13.8
Q ss_pred hcCCCCccccccccccccccccC
Q 018386 227 SRTASDTPVLNRCTRIAGATTSN 249 (357)
Q Consensus 227 ~r~a~~tpvl~~ct~~~~~~~~~ 249 (357)
.|....-|||++-+.+-..=|.+
T Consensus 973 ~r~~~~p~vl~~As~~f~~LT~G 995 (1111)
T PF13514_consen 973 YREERQPPVLARASEYFSRLTGG 995 (1111)
T ss_pred HHHHhhHHHHHHHHHHHHHHhCC
Confidence 34445678888877755444433
No 246
>PF13870 DUF4201: Domain of unknown function (DUF4201)
Probab=36.94 E-value=3e+02 Score=24.34 Aligned_cols=103 Identities=18% Similarity=0.250 Sum_probs=45.0
Q ss_pred hhhHHhhhhhhhhhhhhhHhhhhhHHHhhhhhHHHHHHHHHHHHHHHHH----HHHHhhh---hhhhhhHHHHHHHHHHh
Q 018386 130 SIEVSAFLDERAFLWNQYKVMENDLTSKINSKRAEVDRANERIEKLLAS----TEQLQLS---NNEKDETIAKLKTQIAQ 202 (357)
Q Consensus 130 dkEVsALlaEKdFVWNQ~k~ME~Dyt~lLK~K~~EvaQAtE~iqKL~q~----~EeLQ~~---nqeKDdeI~RLqak~ae 202 (357)
-.++..-|-.-||- |+++==..|..+|..+..|+..---.+.+-++. -|.|+.. ...-..+|...+..+++
T Consensus 32 ke~lge~L~~iDFe--qLkien~~l~~kIeERn~eL~~Lk~~~~~~v~~L~h~keKl~~~~~~~~~l~~~l~~~~~~~~~ 109 (177)
T PF13870_consen 32 KEELGEGLHLIDFE--QLKIENQQLNEKIEERNKELLKLKKKIGKTVQILTHVKEKLHFLSEELERLKQELKDREEELAK 109 (177)
T ss_pred HHHhcCcccHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444455553 444444566666666666665543333322222 2222211 11112222222222222
Q ss_pred hhhcccchhhHHHHHHHHHHHHHhhcCCCCcc
Q 018386 203 METGSKKWNTEISRLTQELELLRKSRTASDTP 234 (357)
Q Consensus 203 Me~~~Kkk~eeIs~L~~eLe~lrk~r~a~~tp 234 (357)
........+.+..++......|+..-+.-..|
T Consensus 110 ~r~~l~~~k~~r~k~~~~~~~l~~~~~~~~~P 141 (177)
T PF13870_consen 110 LREELYRVKKERDKLRKQNKKLRQQGGLLGVP 141 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCc
Confidence 22222355555556666666666555554445
No 247
>cd07593 BAR_MUG137_fungi The Bin/Amphiphysin/Rvs (BAR) domain of Schizosaccharomyces pombe Meiotically Up-regulated Gene 137 protein and similar proteins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions including organelle biogenesis, membrane trafficking or remodeling, and cell division and migration. This subfamily is composed predominantly of uncharacterized fungal proteins with similarity to Schizosaccharomyces pombe Meiotically Up-regulated Gene 137 protein (MUG137), which may play a role in meiosis and sporulation in fission yeast. MUG137 contains an N-terminal BAR domain and a C-terminal SH3 domain, similar to endophilins. Endophilins play roles in synaptic vesicle formation, virus budding, mitochondrial morphology maintenance, receptor-mediated endocytosis inhibition, and endosomal sorting. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be invol
Probab=36.72 E-value=3.7e+02 Score=25.43 Aligned_cols=101 Identities=14% Similarity=0.211 Sum_probs=62.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhh-------hHHHHHHhHHhHHHHHHHHHHHHHhhhhhh
Q 018386 15 KRDKILVKMLKSQQEQIETLVKEREILEDHLKMQHEKWVSDVR-------LYEDHISQMKSEIVAQELIHLLDAAKSDMV 87 (357)
Q Consensus 15 ~W~riLVkMLr~~q~QvEsL~~ER~~LEa~ik~QhE~W~sdv~-------~lqdrLsqm~~el~~eE~~~~~EaAk~~l~ 87 (357)
.|..-++.=|+...+++.+..+.|+.|+.+. .-.|.+.++.. .++.-|.+.. .++....|-|. ..|
T Consensus 97 ~~~~~~l~pL~~~l~~~k~i~k~RKkLe~rR-LdyD~~ksk~~kak~~~~~~eeElr~Ae-----~kfees~E~a~-~~M 169 (215)
T cd07593 97 RLSDTFLANIERSLAEMKEYHSARKKLESRR-LAYDAALTKSQKAKKEDSRLEEELRRAK-----AKYEESSEDVE-ARM 169 (215)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhccccchhHHHHHHHHH-----HHHHHHHHHHH-HHH
Confidence 4444466667777789999999999999765 12222222111 1111111111 22223333333 345
Q ss_pred hchhhHHHHHHHHHhhhchhHHHHHHHHHHHHhcC
Q 018386 88 VGLKLREASLLKLMLEYTDDQLADFMAWFDLLRQK 122 (357)
Q Consensus 88 LGlK~RE~~l~k~~lE~teDeL~DFka~~~~L~~~ 122 (357)
.++...|.+-+..+.+.-+-+|.=|+.|...|..-
T Consensus 170 ~~i~~~e~e~~~~L~~lv~AQl~Yh~q~~e~L~~l 204 (215)
T cd07593 170 VAIKESEADQYRDLTDLLDAELDYHQQSLDVLREV 204 (215)
T ss_pred HHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 68888888888888898889999999998888753
No 248
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=36.35 E-value=5.2e+02 Score=27.97 Aligned_cols=43 Identities=16% Similarity=0.208 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHhcCCCCCCcchhhHHhhhhhhhhhhh-hhHhhhhhHH
Q 018386 109 LADFMAWFDLLRQKPKDGEPKSIEVSAFLDERAFLWN-QYKVMENDLT 155 (357)
Q Consensus 109 L~DFka~~~~L~~~lke~SeKdkEVsALlaEKdFVWN-Q~k~ME~Dyt 155 (357)
+.-|++-+..+..+++. .+|+...|.+.--||- +++-||.-+.
T Consensus 384 ~~q~q~k~~k~~kel~~----~~E~n~~l~knq~vw~~kl~~~~e~~~ 427 (493)
T KOG0804|consen 384 LQQLQTKLKKCQKELKE----EREENKKLIKNQDVWRGKLKELEEREK 427 (493)
T ss_pred HHHHHHHHHHHHHHHHH----HHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 44455555555554433 1267776777666773 4444444333
No 249
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []. Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.
Probab=36.14 E-value=1.2e+02 Score=28.86 Aligned_cols=63 Identities=30% Similarity=0.454 Sum_probs=27.6
Q ss_pred hhhhhHHHHHHHHHHHHH----HHHHHHHHhhhhhhhhhHHHHHHHHHHhhhhcccchhhHHHHHHHHHHHHHh
Q 018386 157 KINSKRAEVDRANERIEK----LLASTEQLQLSNNEKDETIAKLKTQIAQMETGSKKWNTEISRLTQELELLRK 226 (357)
Q Consensus 157 lLK~K~~EvaQAtE~iqK----L~q~~EeLQ~~nqeKDdeI~RLqak~aeMe~~~Kkk~eeIs~L~~eLe~lrk 226 (357)
.|..|..++.+++..+.. ....-+.|..-..++..+|.+|... ...+..|...|..+|+.+|.
T Consensus 51 ~Le~k~~eaee~~~rL~~~~~~~~eEk~~Le~e~~e~~~~i~~l~ee-------~~~ke~Ea~~lq~el~~ar~ 117 (246)
T PF00769_consen 51 ELEQKRQEAEEEKQRLEEEAEMQEEEKEQLEQELREAEAEIARLEEE-------SERKEEEAEELQEELEEARE 117 (246)
T ss_dssp HHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHH
Confidence 455555555444433332 2233333443444444444444444 44666666666666666555
No 250
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=36.03 E-value=3.6e+02 Score=25.08 Aligned_cols=44 Identities=25% Similarity=0.314 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhHHHHHHhHH
Q 018386 23 MLKSQQEQIETLVKEREILEDHLKMQHEKWVSDVRLYEDHISQMK 67 (357)
Q Consensus 23 MLr~~q~QvEsL~~ER~~LEa~ik~QhE~W~sdv~~lqdrLsqm~ 67 (357)
-|...|..++.|..|=.+|.. ++..|+.=+.....-++.|.++.
T Consensus 20 ~l~elq~~l~~l~~ENk~Lk~-lq~Rq~kAL~k~e~~e~~Lpqll 63 (194)
T PF15619_consen 20 ELAELQRKLQELRKENKTLKQ-LQKRQEKALQKYEDTEAELPQLL 63 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHhhhhhHHHHH
Confidence 345556666666666666653 33344544444444455555544
No 251
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=35.56 E-value=1.7e+02 Score=30.06 Aligned_cols=49 Identities=18% Similarity=0.233 Sum_probs=35.0
Q ss_pred HHhhhhhhhhhHHHHHHHHHHhhhhcccchhhHHHHHHHHHHHHHhhcC
Q 018386 181 QLQLSNNEKDETIAKLKTQIAQMETGSKKWNTEISRLTQELELLRKSRT 229 (357)
Q Consensus 181 eLQ~~nqeKDdeI~RLqak~aeMe~~~Kkk~eeIs~L~~eLe~lrk~r~ 229 (357)
++....+-.+.++..|.+.+.+.+...++.+++|.+|+++|..+-..+.
T Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~l~~~~~ 176 (525)
T TIGR02231 128 EWFQAFDFNGSEIERLLTEDREAERRIRELEKQLSELQNELNALLTGKS 176 (525)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCc
Confidence 3334444445566666777777777777889999999999998877654
No 252
>PF11945 WASH_WAHD: WAHD domain of WASH complex; InterPro: IPR021854 This entry represents a component of the WASH complex. The WASH complex is present at the surface of endosomes and recruits and activates the Arp2/3 complex to induce actin polymerisation. The WASH complex plays a key role in the fission of tubules that serve as transport intermediates during endosome sorting []. The WASH complex's subunit structure: F-actin-capping protein subunit alpha (CAPZA1, CAPZA2 or CAPZA3), F-actin-capping protein subunit beta (CAPZB), WASH (WASH1, WASH2P, WASH3P, WASH4P, WASH5P or WASH6P), FAM21 (FAM21A, FAM21B or FAM21C), KIAA1033, KIAA0196 (strumpellin) and CCDC53. This entry represents the WASH subunit of the WASH complex. WASH genes duplicated to multiple chromosomal ends during primate evolution, with highest copy number reached in humans, whose WASH repertoires probably vary extensively among individuals []. It is therefore difficult to determine which gene is functional or not. The telomeric region of chromosome 9p is paralogous to the pericentromeric regions of chromosome 9 as well as to 2q. Paralogous regions contain 7 transcriptional units. Duplicated WASH genes are also present in the Xq/Yq pseudoautosomal region, as well as on chromosome 1 and 15. The chromosome 16 copy seems to be a pseudogene.
Probab=35.51 E-value=1.1e+02 Score=30.34 Aligned_cols=59 Identities=15% Similarity=0.255 Sum_probs=45.3
Q ss_pred HHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHhhhhcccchhhHHHHHHHHHHHHHhhcCC
Q 018386 169 NERIEKLLASTEQLQLSNNEKDETIAKLKTQIAQMETGSKKWNTEISRLTQELELLRKSRTA 230 (357)
Q Consensus 169 tE~iqKL~q~~EeLQ~~nqeKDdeI~RLqak~aeMe~~~Kkk~eeIs~L~~eLe~lrk~r~a 230 (357)
.|.|......++.|+.+. +|...|+.+.+..-..-....+++|+.+...++.|+-|+.|
T Consensus 17 eEti~qi~~aL~~L~~v~---~diF~rI~~Rv~~~~~~l~~i~~Ri~~~qaKi~~l~gs~kA 75 (297)
T PF11945_consen 17 EETILQIADALEYLDKVS---NDIFSRISARVERNRERLQAIQQRIEVAQAKIEKLQGSKKA 75 (297)
T ss_pred HHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcc
Confidence 355666666666665444 57788888887766666678899999999999999999874
No 253
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=35.33 E-value=1.7e+02 Score=32.66 Aligned_cols=54 Identities=19% Similarity=0.228 Sum_probs=40.7
Q ss_pred hhHhhhhhHHHhhhhhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHH
Q 018386 146 QYKVMENDLTSKINSKRAEVDRANERIEKLLASTEQLQLSNNEKDETIAKLKTQ 199 (357)
Q Consensus 146 Q~k~ME~Dyt~lLK~K~~EvaQAtE~iqKL~q~~EeLQ~~nqeKDdeI~RLqak 199 (357)
.--..|..|...|..-+.|..|+.-.+...++.++-|...+++=...+..|+.+
T Consensus 24 esa~~E~~~~~~i~~l~~elk~~~~~~~~~~~e~~rl~~~~~~~~~~~~~~e~~ 77 (717)
T PF09730_consen 24 ESASKEAYLQQRILELENELKQLRQELSNVQAENERLSQLNQELRKECEDLELE 77 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345678889999988888888888888888888888877777665555544444
No 254
>PF13863 DUF4200: Domain of unknown function (DUF4200)
Probab=35.15 E-value=2.5e+02 Score=23.01 Aligned_cols=28 Identities=25% Similarity=0.349 Sum_probs=19.7
Q ss_pred hhhhcccchhhHHHHHHHHHHHHHhhcC
Q 018386 202 QMETGSKKWNTEISRLTQELELLRKSRT 229 (357)
Q Consensus 202 eMe~~~Kkk~eeIs~L~~eLe~lrk~r~ 229 (357)
+-......+..+|..|..+|..|++-++
T Consensus 71 ~e~k~~~~k~~ei~~l~~~l~~l~~~~~ 98 (126)
T PF13863_consen 71 EEKKKKEEKEAEIKKLKAELEELKSEIS 98 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334445667888888888888887654
No 255
>KOG2398 consensus Predicted proline-serine-threonine phosphatase-interacting protein (PSTPIP) [Cell cycle control, cell division, chromosome partitioning]
Probab=34.98 E-value=2e+02 Score=31.37 Aligned_cols=82 Identities=21% Similarity=0.272 Sum_probs=41.5
Q ss_pred hhhhhHh-hhhhHHHhhhhhHHHHHHHHHHHHH-----HHHHHHHHhhhhhhhhhHHHHHHHHHHhhhhcccchhhHHHH
Q 018386 143 LWNQYKV-MENDLTSKINSKRAEVDRANERIEK-----LLASTEQLQLSNNEKDETIAKLKTQIAQMETGSKKWNTEISR 216 (357)
Q Consensus 143 VWNQ~k~-ME~Dyt~lLK~K~~EvaQAtE~iqK-----L~q~~EeLQ~~nqeKDdeI~RLqak~aeMe~~~Kkk~eeIs~ 216 (357)
.|-|.+- .+..|. ++++|...+.++.|...- -+..+...+....+-+++..++- +..+.-.++|-+++-.
T Consensus 100 ~~~q~~~~~~~~~~-~~~~~~~~~~~~~e~e~~~~~~k~~~~~~k~~~~i~~~~~~y~~~~---~~~~~vr~~w~~~~~~ 175 (611)
T KOG2398|consen 100 KQDQSKKKAKDTYE-VLCAKSNYLHRCQEKESLKEKEKRKKELAKAELKIKEAREEYRSLV---AKLEKVRKDWEQEMTD 175 (611)
T ss_pred HHHhhHHHHHHHHH-HHHHHHHHHHHHHhhhhcccccchhhHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHH
Confidence 3555543 344444 677777777666543321 11222222233333333333333 3445666778888777
Q ss_pred HHHHHHHHHhhc
Q 018386 217 LTQELELLRKSR 228 (357)
Q Consensus 217 L~~eLe~lrk~r 228 (357)
+-..+|.+=-.|
T Consensus 176 ~c~~fQ~~Ee~r 187 (611)
T KOG2398|consen 176 LCLKFQEIEESR 187 (611)
T ss_pred HHHHHHHHHHHH
Confidence 777776654443
No 256
>PF07200 Mod_r: Modifier of rudimentary (Mod(r)) protein; InterPro: IPR009851 This entry represents a conserved region approximately 150 residues long within a number of eukaryotic proteins that show homology with Drosophila melanogaster Modifier of rudimentary (Mod(r)) proteins. The N-terminal half of Mod(r) proteins is acidic, whereas the C-terminal half is basic [], and both of these regions are represented in this family.; PDB: 2CAZ_F 2P22_C 2F66_F.
Probab=34.94 E-value=1.8e+02 Score=24.87 Aligned_cols=60 Identities=23% Similarity=0.322 Sum_probs=34.9
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHhhhhcccchhhHHHHHHHHHHHH
Q 018386 165 VDRANERIEKLLASTEQLQLSNNEKDETIAKLKTQIAQMETGSKKWNTEISRLTQELELL 224 (357)
Q Consensus 165 vaQAtE~iqKL~q~~EeLQ~~nqeKDdeI~RLqak~aeMe~~~Kkk~eeIs~L~~eLe~l 224 (357)
+..-+..++.|...++.|-..|-.+..+|..+++++.+.-...+....+-..+..+++.+
T Consensus 29 ~~~~~~~~~~l~~~n~~lAe~nL~~~~~l~~~r~~l~~~~~~~~~L~~~~~~k~~~~~~l 88 (150)
T PF07200_consen 29 VQELQQEREELLAENEELAEQNLSLEPELEELRSQLQELYEELKELESEYQEKEQQQDEL 88 (150)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444455555666666666666666667777777777666666666666666666666666
No 257
>COG3879 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=34.44 E-value=1.1e+02 Score=30.16 Aligned_cols=63 Identities=21% Similarity=0.220 Sum_probs=38.3
Q ss_pred HHHHHHHHHhhhhhhhhhHHHHHHHHHHhhhhcccchhhHHHHHHHHHHHHHhhcCCCCccccccccc
Q 018386 174 KLLASTEQLQLSNNEKDETIAKLKTQIAQMETGSKKWNTEISRLTQELELLRKSRTASDTPVLNRCTR 241 (357)
Q Consensus 174 KL~q~~EeLQ~~nqeKDdeI~RLqak~aeMe~~~Kkk~eeIs~L~~eLe~lrk~r~a~~tpvl~~ct~ 241 (357)
+|++.+..+|...+...+||..++.++..-..-. .+--..++++|+.||..=+ -+||-.+--.
T Consensus 54 ~L~~e~~s~Q~~~~~L~~ev~~~~~~~~s~~~~~---~t~~~~ie~~l~~l~~~aG--~v~V~G~Gl~ 116 (247)
T COG3879 54 DLVKELRSLQKKVNTLAAEVEDLENKLDSVRRSV---LTDDAALEDRLEKLRMLAG--SVPVTGPGLV 116 (247)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH---HhHHHHHHHHHHHHHHHhc--cCCCcCCcEE
Confidence 6666666666666666666666666665333111 1222345668999999877 6777655443
No 258
>PF12711 Kinesin-relat_1: Kinesin motor; InterPro: IPR024658 Kinesin [, , ] is a microtubule-associated force-producing protein that may play a role in organelle transport. The kinesin motor activity is directed toward the microtubule's plus end. Kinesin is an oligomeric complex composed of two heavy chains and two light chains. The maintenance of the quaternary structure does not require interchain disulphide bonds. The heavy chain is composed of three structural domains: a large globular N-terminal domain which is responsible for the motor activity of kinesin (it is known to hydrolyse ATP, to bind and move on microtubules), a central alpha-helical coiled coil domain that mediates the heavy chain dimerisation; and a small globular C-terminal domain which interacts with other proteins (such as the kinesin light chains), vesicles and membranous organelles. A number of proteins have been recently found that contain a domain similar to that of the kinesin 'motor' domain [, ]: Drosophila melanogaster claret segregational protein (ncd). Ncd is required for normal chromosomal segregation in meiosis, in females, and in early mitotic divisions of the embryo. The ncd motor activity is directed toward the microtubule's minus end. Homo sapiens CENP-E []. CENP-E is a protein that associates with kinetochores during chromosome congression, relocates to the spindle midzone at anaphase, and is quantitatively discarded at the end of the cell division. CENP-E is probably an important motor molecule in chromosome movement and/or spindle elongation. H. sapiens mitotic kinesin-like protein-1 (MKLP-1), a motor protein whose activity is directed toward the microtubule's plus end. Saccharomyces cerevisiae KAR3 protein, which is essential for nuclear fusion during mating. KAR3 may mediate microtubule sliding during nuclear fusion and possibly mitosis. S. cerevisiae CIN8 and KIP1 proteins which are required for the assembly of the mitotic spindle. Both proteins seem to interact with spindle microtubules to produce an outwardly directed force acting upon the poles. Emericella nidulans (Aspergillus nidulans) bimC, which plays an important role in nuclear division. A. nidulans klpA. Caenorhabditis elegans unc-104, which may be required for the transport of substances needed for neuronal cell differentiation. C. elegans osm-3. Xenopus laevis Eg5, which may be involved in mitosis. Arabidopsis thaliana KatA, KatB and katC. Chlamydomonas reinhardtii FLA10/KHP1 and KLP1. Both proteins seem to play a role in the rotation or twisting of the microtubules of the flagella. C. elegans hypothetical protein T09A5.2. Kinesin-like proteins KLP2 (or KIF15) also contain a kinesin 'motor' domain. They are involved in mitotic spindle assembly, playing a role in positioning spindle poles during mitosis, specifically at prometaphase []. This entry represents a domain of unknown function found in this type of kinesin-like proteins.
Probab=34.08 E-value=51 Score=27.64 Aligned_cols=12 Identities=17% Similarity=0.501 Sum_probs=7.9
Q ss_pred hhHHHHHHHHHH
Q 018386 190 DETIAKLKTQIA 201 (357)
Q Consensus 190 DdeI~RLqak~a 201 (357)
+|.|.||+..+.
T Consensus 2 EdkI~rLE~~~~ 13 (86)
T PF12711_consen 2 EDKIKRLEKLLD 13 (86)
T ss_pred chHHHHHHHHhc
Confidence 566777776654
No 259
>PRK10698 phage shock protein PspA; Provisional
Probab=33.54 E-value=4.1e+02 Score=24.95 Aligned_cols=35 Identities=20% Similarity=0.446 Sum_probs=19.9
Q ss_pred HHHHHHHHHhhhhcc--------cchhhHHHH------HHHHHHHHHhh
Q 018386 193 IAKLKTQIAQMETGS--------KKWNTEISR------LTQELELLRKS 227 (357)
Q Consensus 193 I~RLqak~aeMe~~~--------Kkk~eeIs~------L~~eLe~lrk~ 227 (357)
+.|++.++.+||+.. +-.+.++.. ..+||+.|++.
T Consensus 168 f~rmE~ki~~~Ea~aea~~~~~~~~l~~e~~~le~~~~ve~ELa~LK~~ 216 (222)
T PRK10698 168 FESFERRIDQMEAEAESHGFGKQKSLDQQFAELKADDEISEQLAALKAK 216 (222)
T ss_pred HHHHHHHHHHHHHHHhHhhccCCCCHHHHHHHhhccchHHHHHHHHHHH
Confidence 334555555554433 235566655 47788888864
No 260
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=33.39 E-value=1.8e+02 Score=23.12 Aligned_cols=54 Identities=22% Similarity=0.202 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHhhhhcccchhhHHHHHHHHHHHHH
Q 018386 165 VDRANERIEKLLASTEQLQLSNNEKDETIAKLKTQIAQMETGSKKWNTEISRLTQELELLR 225 (357)
Q Consensus 165 vaQAtE~iqKL~q~~EeLQ~~nqeKDdeI~RLqak~aeMe~~~Kkk~eeIs~L~~eLe~lr 225 (357)
.++|+.+++.-. ..+-..+.+.|.-+.+|...-. ...+.+.|+..|..||+..|
T Consensus 14 Ld~~~rk~~~~~---~~~k~L~~ERd~~~~~l~~a~~----e~~~Lk~E~e~L~~el~~~r 67 (69)
T PF14197_consen 14 LDSLTRKNSVHE---IENKRLRRERDSAERQLGDAYE----ENNKLKEENEALRKELEELR 67 (69)
T ss_pred HHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHhh
Confidence 345555555444 3334445677777777766443 11234455555555555444
No 261
>PRK09039 hypothetical protein; Validated
Probab=33.32 E-value=5e+02 Score=25.90 Aligned_cols=32 Identities=19% Similarity=0.296 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHH
Q 018386 170 ERIEKLLASTEQLQLSNNEKDETIAKLKTQIA 201 (357)
Q Consensus 170 E~iqKL~q~~EeLQ~~nqeKDdeI~RLqak~a 201 (357)
+.++.|+..++.++....+....|..|+.++.
T Consensus 151 ~Qla~le~~L~~ae~~~~~~~~~i~~L~~~L~ 182 (343)
T PRK09039 151 RQLAALEAALDASEKRDRESQAKIADLGRRLN 182 (343)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33555555555555555666666666666654
No 262
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=33.20 E-value=8.8e+02 Score=28.70 Aligned_cols=37 Identities=16% Similarity=0.218 Sum_probs=16.1
Q ss_pred chhhHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018386 9 ASLERQKRDKI----LVKMLKSQQEQIETLVKEREILEDHL 45 (357)
Q Consensus 9 ~ss~r~~W~ri----LVkMLr~~q~QvEsL~~ER~~LEa~i 45 (357)
|..-|+.|+.- |=.=|..-.+++..+-.++..|++++
T Consensus 732 G~~aR~~~R~~ri~el~~~IaeL~~~i~~l~~~l~~l~~r~ 772 (1353)
T TIGR02680 732 GAAARERARLRRIAELDARLAAVDDELAELARELRALGARQ 772 (1353)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555543 33333333444444444444444444
No 263
>PRK04406 hypothetical protein; Provisional
Probab=33.11 E-value=1.8e+02 Score=23.48 Aligned_cols=43 Identities=14% Similarity=0.283 Sum_probs=27.0
Q ss_pred HHHHHHHHhhhhhhhhhHHHHHHHHHHhhhhcccchhhHHHHHHHHHHHH
Q 018386 175 LLASTEQLQLSNNEKDETIAKLKTQIAQMETGSKKWNTEISRLTQELELL 224 (357)
Q Consensus 175 L~q~~EeLQ~~nqeKDdeI~RLqak~aeMe~~~Kkk~eeIs~L~~eLe~l 224 (357)
+.+-+..|+.-.-==++.|..|..-++ .-..+|..|...|..|
T Consensus 9 le~Ri~~LE~~lAfQE~tIe~LN~~v~-------~Qq~~I~~L~~ql~~L 51 (75)
T PRK04406 9 LEERINDLECQLAFQEQTIEELNDALS-------QQQLLITKMQDQMKYV 51 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHH
Confidence 555566665444444777777777777 4455666677666666
No 264
>PRK12704 phosphodiesterase; Provisional
Probab=33.10 E-value=3.2e+02 Score=28.94 Aligned_cols=86 Identities=19% Similarity=0.172 Sum_probs=0.0
Q ss_pred hhhhhHhhhhhHHHhhhhhHHHHHHH----HHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHhhhhcccchhhHHHHHH
Q 018386 143 LWNQYKVMENDLTSKINSKRAEVDRA----NERIEKLLASTEQLQLSNNEKDETIAKLKTQIAQMETGSKKWNTEISRLT 218 (357)
Q Consensus 143 VWNQ~k~ME~Dyt~lLK~K~~EvaQA----tE~iqKL~q~~EeLQ~~nqeKDdeI~RLqak~aeMe~~~Kkk~eeIs~L~ 218 (357)
..+..+-++...-.-+...+.|+.+- ...++.....+++-...-+++.+.+.+.+.++...+....+..+++.++.
T Consensus 51 Ake~~ke~~leaeeE~~~~R~Ele~e~~~~e~~L~qrE~rL~~Ree~Le~r~e~Lekke~eL~~re~~Le~re~eLe~~~ 130 (520)
T PRK12704 51 AEAIKKEALLEAKEEIHKLRNEFEKELRERRNELQKLEKRLLQKEENLDRKLELLEKREEELEKKEKELEQKQQELEKKE 130 (520)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHhhc
Q 018386 219 QELELLRKSR 228 (357)
Q Consensus 219 ~eLe~lrk~r 228 (357)
.+++.+...+
T Consensus 131 ~~~~~~~~~~ 140 (520)
T PRK12704 131 EELEELIEEQ 140 (520)
T ss_pred HHHHHHHHHH
No 265
>PRK14471 F0F1 ATP synthase subunit B; Provisional
Probab=33.06 E-value=3.3e+02 Score=23.70 Aligned_cols=63 Identities=17% Similarity=0.288 Sum_probs=44.1
Q ss_pred hhhhhhhhhHhhhhhHHHhhhhhHHHHHHHHHHHHHHHHHHHH-HhhhhhhhhhHHHHHHHHHH
Q 018386 139 ERAFLWNQYKVMENDLTSKINSKRAEVDRANERIEKLLASTEQ-LQLSNNEKDETIAKLKTQIA 201 (357)
Q Consensus 139 EKdFVWNQ~k~ME~Dyt~lLK~K~~EvaQAtE~iqKL~q~~Ee-LQ~~nqeKDdeI~RLqak~a 201 (357)
=+-|+|.-+.-|=.+-...+...-.++.++.+.++.++...++ |..+.++....|..-+.+..
T Consensus 25 l~~~l~~pi~~~l~~R~~~I~~~l~~A~~~~~ea~~~~~e~e~~l~~A~~ea~~ii~~A~~~a~ 88 (164)
T PRK14471 25 LAKFAWKPILGAVKEREDSIKNALASAEEARKEMQNLQADNERLLKEARAERDAILKEAREIKE 88 (164)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3568888877666666778888888888888888888777775 45555555555555555443
No 266
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=32.67 E-value=6.1e+02 Score=26.67 Aligned_cols=15 Identities=20% Similarity=0.100 Sum_probs=7.3
Q ss_pred HHHHHHHHHHhcCCC
Q 018386 110 ADFMAWFDLLRQKPK 124 (357)
Q Consensus 110 ~DFka~~~~L~~~lk 124 (357)
..|+.-++.|.+++.
T Consensus 144 ~~lqlqL~~l~~e~~ 158 (401)
T PF06785_consen 144 QCLQLQLDALQQECG 158 (401)
T ss_pred HHHHHhHHHHHHHHh
Confidence 444445555555444
No 267
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=32.45 E-value=1e+02 Score=30.21 Aligned_cols=21 Identities=24% Similarity=0.590 Sum_probs=13.1
Q ss_pred hhcccchhhHHHHHHHHHHHH
Q 018386 204 ETGSKKWNTEISRLTQELELL 224 (357)
Q Consensus 204 e~~~Kkk~eeIs~L~~eLe~l 224 (357)
......|.+.+..|+..+..|
T Consensus 290 ~~E~~RW~~~~~~l~~~~~~l 310 (344)
T PF12777_consen 290 SGEKERWSEQIEELEEQLKNL 310 (344)
T ss_dssp HHHHHCCHCHHHHHHHHHHHH
T ss_pred cchhhhHHHHHHHHHHHhccc
Confidence 344456777777776666655
No 268
>PRK14158 heat shock protein GrpE; Provisional
Probab=32.45 E-value=58 Score=30.50 Aligned_cols=10 Identities=0% Similarity=0.262 Sum_probs=4.7
Q ss_pred hHHHHHHHHH
Q 018386 191 ETIAKLKTQI 200 (357)
Q Consensus 191 deI~RLqak~ 200 (357)
+...|++|+.
T Consensus 61 d~~lR~~Aef 70 (194)
T PRK14158 61 DKYLRERADL 70 (194)
T ss_pred HHHHHHHHHH
Confidence 4444554444
No 269
>PF15272 BBP1_C: Spindle pole body component BBP1, C-terminal
Probab=32.38 E-value=4.2e+02 Score=25.27 Aligned_cols=29 Identities=28% Similarity=0.308 Sum_probs=19.2
Q ss_pred HhhhhhhhhhHHHHHHHHHHhhhhcccch
Q 018386 182 LQLSNNEKDETIAKLKTQIAQMETGSKKW 210 (357)
Q Consensus 182 LQ~~nqeKDdeI~RLqak~aeMe~~~Kkk 210 (357)
|.....+||.+|.+++.++..++.-.++.
T Consensus 98 lvd~~~~kd~~i~~~~~~l~~~~~r~~el 126 (196)
T PF15272_consen 98 LVDQMIEKDREIRTLQDELLSLELRNKEL 126 (196)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 33456778888888888877665554443
No 270
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []. Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.
Probab=32.09 E-value=3e+02 Score=26.25 Aligned_cols=38 Identities=13% Similarity=0.296 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHhhh
Q 018386 167 RANERIEKLLASTEQLQLSNNEKDETIAKLKTQIAQME 204 (357)
Q Consensus 167 QAtE~iqKL~q~~EeLQ~~nqeKDdeI~RLqak~aeMe 204 (357)
+--..+..+...+..|....+.|+.+..+|+.++..+.
T Consensus 79 ~Le~e~~e~~~~i~~l~ee~~~ke~Ea~~lq~el~~ar 116 (246)
T PF00769_consen 79 QLEQELREAEAEIARLEEESERKEEEAEELQEELEEAR 116 (246)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445677777888888889999999999999987443
No 271
>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins. These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane
Probab=31.97 E-value=63 Score=31.14 Aligned_cols=33 Identities=15% Similarity=0.313 Sum_probs=23.7
Q ss_pred HHHHHHHhhhhcccchhhHHHHHHHHHHHHHhh
Q 018386 195 KLKTQIAQMETGSKKWNTEISRLTQELELLRKS 227 (357)
Q Consensus 195 RLqak~aeMe~~~Kkk~eeIs~L~~eLe~lrk~ 227 (357)
.|+.++.+.+....+.++=|.+|+.+|..+-..
T Consensus 3 ~lq~~l~~l~~~~~~~~~L~~kLE~DL~~~~~~ 35 (248)
T PF08172_consen 3 ELQKELSELEAKLEEQKELNAKLENDLAKVQAS 35 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 345555555555557888899999999988755
No 272
>PF03938 OmpH: Outer membrane protein (OmpH-like); InterPro: IPR005632 This entry includes outer membrane proteins such as OmpH (Skp) among others. OmpH (outer membrane protein H) is a major structural protein of the outer membrane. In Pasteurella multocida it acts as a channel-forming transmembrane porin []. Porins act as molecular sieves to allow the diffusion of small hydrophilic solutes through the outer membrane and also acts as a receptor for bacteriophages and bacteriocins. Porins are highly immunogenic and are conserved in bacterial families, making them attractive vaccine candidates []. The 17kDa protein (Skp, OmpH) of Escherichia coli is a homotrimeric periplasmic chaperone for newly synthesised outer-membrane proteins, the X-ray structure of which has been reported at resolutions of 2.35 A and 2.30 A [, ]. Three hairpin-shaped alpha-helical extensions reach out by approximately 60 A from a trimerisation domain, which is composed of three intersubunit beta-sheets that wind around a central axis. The alpha-helical extensions approach each other at their distal turns, resulting in a fold that resembles a 'three-pronged grasping forcep'. The overall shape of Skp is reminiscent of the cytosolic chaperone prefoldin (IPR009053 from INTERPRO), although it is based on a radically different topology. The peculiar architecture, with apparent plasticity of the prongs and distinct electrostatic and hydrophobic surface properties, supports the recently proposed biochemical mechanism of this chaperone: formation of a Skp(3)-Omp complex protects the outer membrane protein from aggregation during passage through the bacterial periplasm. The ability of Skp to prevent the aggregation of model substrates in vitro is independent of ATP. Skp can interact directly with membrane lipids and lipopolysaccharide. These interactions are needed for efficient Skp-assisted folding of membrane proteins [].; GO: 0051082 unfolded protein binding; PDB: 1SG2_C 1U2M_C.
Probab=31.82 E-value=2.1e+02 Score=24.26 Aligned_cols=18 Identities=22% Similarity=0.207 Sum_probs=8.2
Q ss_pred HHHHHHHHhhcCCCCccccc
Q 018386 218 TQELELLRKSRTASDTPVLN 237 (357)
Q Consensus 218 ~~eLe~lrk~r~a~~tpvl~ 237 (357)
..-++..-+.++ ++=||+
T Consensus 119 ~~~v~~~a~~~g--~~~Vl~ 136 (158)
T PF03938_consen 119 NKAVEEYAKENG--YDLVLD 136 (158)
T ss_dssp HHHHHHHHHHTT---SEEEE
T ss_pred HHHHHHHHHHcC--CeEEEe
Confidence 344444555555 444544
No 273
>PF03245 Phage_lysis: Bacteriophage Rz lysis protein; InterPro: IPR004929 Many bacteriophages with Gram-negative hosts contain two auxiliary lysis genes Rz and Rz1. These genes are nested, with Rz1 occupying the last third of Rz in a +1 reading frame. Both of these genes are required for host cell lysis if the outer membrane is stabilised by millimolar concentrations of divalent cations, but are otherwise uneccessary []. The Rz protein is believed to posses endopeptidase activity, while Rz1 encodes a prolipoprotein which, after cleavage by a signal peptidase, is located in the outer membrane. It has been suggested that these two proteins may form a complex which cleaves the oligopeptide crosslinks between glycosidic strands in the peptidoglycan and the Lpp lipoproteins of the outer bacterial membrane. For more information see []. This entry represents the Rz protein and related sequences. This family is not considered to be a peptidase according to the MEROPs database.; GO: 0019835 cytolysis
Probab=31.74 E-value=2.6e+02 Score=24.16 Aligned_cols=38 Identities=32% Similarity=0.336 Sum_probs=22.5
Q ss_pred chhhHHHHHHHHHHHHHhhcCCCCccccccccccccccccCCCC
Q 018386 209 KWNTEISRLTQELELLRKSRTASDTPVLNRCTRIAGATTSNAGD 252 (357)
Q Consensus 209 kk~eeIs~L~~eLe~lrk~r~a~~tpvl~~ct~~~~~~~~~~~~ 252 (357)
..+.+|.+|.+.|-.=++.= + |--.|.. .+.+++.+|+
T Consensus 46 ~Ak~e~~~Lr~dl~aG~~RL--~---v~a~C~~-~~~~~~a~~~ 83 (125)
T PF03245_consen 46 DAKAEIDRLRADLAAGNKRL--R---VKATCPA-VPETTSAGGV 83 (125)
T ss_pred HHHhhHHHHHHHHHcCCceE--E---EeccCCC-CCCCCCCCCC
Confidence 77888999999886543211 1 3337777 4444444444
No 274
>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]
Probab=31.69 E-value=6.4e+02 Score=27.11 Aligned_cols=130 Identities=22% Similarity=0.211 Sum_probs=0.0
Q ss_pred HHHHHHHhhhchhHHHHHHHHHHHHhcCCCCCC-----------cchhhHHhhhhhhhhhhhhhHhhhhhHHH-------
Q 018386 95 ASLLKLMLEYTDDQLADFMAWFDLLRQKPKDGE-----------PKSIEVSAFLDERAFLWNQYKVMENDLTS------- 156 (357)
Q Consensus 95 ~~l~k~~lE~teDeL~DFka~~~~L~~~lke~S-----------eKdkEVsALlaEKdFVWNQ~k~ME~Dyt~------- 156 (357)
.+++..=+-...-+|.|.+.-++.+..+|+..+ .-..|..+---|+.-|--++.-.-++|+.
T Consensus 62 lf~~~~~lr~gVfqlddi~~qlr~~rtel~~a~~~k~~~e~er~~~~~El~~~r~e~~~v~~~~~~a~~n~~kAqQ~lar 141 (499)
T COG4372 62 LFLLNRNLRSGVFQLDDIRPQLRALRTELGTAQGEKRAAETEREAARSELQKARQEREAVRQELAAARQNLAKAQQELAR 141 (499)
T ss_pred HHHhhhhHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred ----------hhhhhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHhhhhcccchhhH---HHHHHHHHHH
Q 018386 157 ----------KINSKRAEVDRANERIEKLLASTEQLQLSNNEKDETIAKLKTQIAQMETGSKKWNTE---ISRLTQELEL 223 (357)
Q Consensus 157 ----------lLK~K~~EvaQAtE~iqKL~q~~EeLQ~~nqeKDdeI~RLqak~aeMe~~~Kkk~ee---Is~L~~eLe~ 223 (357)
.|+.--.+-.|+++.++.|+...-+||.++--=+-+-.+|...-+.+|-..++.-.. |.-++.||.+
T Consensus 142 ~t~Q~q~lqtrl~~l~~qr~ql~aq~qsl~a~~k~LQ~s~~Qlk~~~~~L~~r~~~ieQ~~~~la~r~~a~q~r~~ela~ 221 (499)
T COG4372 142 LTKQAQDLQTRLKTLAEQRRQLEAQAQSLQASQKQLQASATQLKSQVLDLKLRSAQIEQEAQNLATRANAAQARTEELAR 221 (499)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred H
Q 018386 224 L 224 (357)
Q Consensus 224 l 224 (357)
.
T Consensus 222 r 222 (499)
T COG4372 222 R 222 (499)
T ss_pred H
No 275
>PRK13428 F0F1 ATP synthase subunit delta; Provisional
Probab=31.56 E-value=4.1e+02 Score=27.44 Aligned_cols=61 Identities=10% Similarity=0.145 Sum_probs=37.1
Q ss_pred hhhhhhhhhHhhhhhHHHhhhhhHHHHHHHHHHHHHHHHHHH-HHhhhhhhhhhHHHHHHHH
Q 018386 139 ERAFLWNQYKVMENDLTSKINSKRAEVDRANERIEKLLASTE-QLQLSNNEKDETIAKLKTQ 199 (357)
Q Consensus 139 EKdFVWNQ~k~ME~Dyt~lLK~K~~EvaQAtE~iqKL~q~~E-eLQ~~nqeKDdeI~RLqak 199 (357)
=+.|+|.-+.-|=..-...+...-.++++|.+.++.+++..+ .|+.+..+..+.|..-+.+
T Consensus 18 L~kfl~~Pi~~~l~~R~~~I~~~L~eAe~a~~ea~~~~~~~e~~L~~Ak~ea~~Ii~~A~~~ 79 (445)
T PRK13428 18 VWRFVVPPVRRLMAARQDTVRQQLAESATAADRLAEADQAHTKAVEDAKAEAARVVEEARED 79 (445)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356888877665555566777777777777777777766533 3444444444444444443
No 276
>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins. These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane
Probab=31.49 E-value=51 Score=31.75 Aligned_cols=33 Identities=30% Similarity=0.441 Sum_probs=22.6
Q ss_pred HHHHHHHHhhhhcccchhhHHHHHHHHHHHHHh
Q 018386 194 AKLKTQIAQMETGSKKWNTEISRLTQELELLRK 226 (357)
Q Consensus 194 ~RLqak~aeMe~~~Kkk~eeIs~L~~eLe~lrk 226 (357)
+|.+.+..|+|....+...+|+.|..|++.||+
T Consensus 89 DRFR~Rn~ELE~elr~~~~~~~~L~~Ev~~L~~ 121 (248)
T PF08172_consen 89 DRFRQRNAELEEELRKQQQTISSLRREVESLRA 121 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456666667777777777777777777776664
No 277
>PF07227 DUF1423: Protein of unknown function (DUF1423); InterPro: IPR004082 A total of 715 potential protein-coding genes have been identified in the nucleotide sequence of Arabidopsis thaliana chromosome 5, with an average gene density of 1 gene per 4001 bp []. Amongst the gene products is a well-conserved family of 130.7kDa proteins that share no sequence similarity with any other known proteins, other than in plants. The sequences are characterised by an N-terminal domain of variable length, a central cysteine-rich region and a relatively acidic C-terminal domain. The sequences may possess a PHD finger.
Probab=31.47 E-value=4.6e+02 Score=28.00 Aligned_cols=85 Identities=16% Similarity=0.200 Sum_probs=52.3
Q ss_pred hchhhHHHHHHHHHhhhchhHHHHHHHHHHHHhcCCCCCCcchhhHHhhhhhhhhhhhhhHhhhhhHHHhhhhhHHHHHH
Q 018386 88 VGLKLREASLLKLMLEYTDDQLADFMAWFDLLRQKPKDGEPKSIEVSAFLDERAFLWNQYKVMENDLTSKINSKRAEVDR 167 (357)
Q Consensus 88 LGlK~RE~~l~k~~lE~teDeL~DFka~~~~L~~~lke~SeKdkEVsALlaEKdFVWNQ~k~ME~Dyt~lLK~K~~EvaQ 167 (357)
.-+|+-|+.++|+++.-+--|-+.|+.-+.. -..-||.+|+..+-+-....++
T Consensus 359 VRiKqAEA~MFQ~kAdEARrEAE~LqrI~~a---------------------------K~~k~EEEYas~~~kl~l~eae 411 (446)
T PF07227_consen 359 VRIKQAEAKMFQLKADEARREAEGLQRIALA---------------------------KSEKIEEEYASRYLKLRLNEAE 411 (446)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------------------hHHHHHHHHHHHHHhhhhHHHH
Confidence 4577788888888877777777777765432 1234899999988775554443
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHH
Q 018386 168 ANERIEKLLASTEQLQLSNNEKDETIAKLKTQIA 201 (357)
Q Consensus 168 AtE~iqKL~q~~EeLQ~~nqeKDdeI~RLqak~a 201 (357)
|.-+++...+..++.+-.+.+.-=-|.++++.
T Consensus 412 --e~r~~~~eelk~~e~s~~~~~~mk~rM~~~I~ 443 (446)
T PF07227_consen 412 --EERKKKFEELKVLENSHRDYDNMKMRMQSEIQ 443 (446)
T ss_pred --HHHHHHHHHHHHHHhhccccchHHHHHHHHHH
Confidence 33444544444455555555555555555554
No 278
>KOG3119 consensus Basic region leucine zipper transcription factor [Transcription]
Probab=31.20 E-value=1.3e+02 Score=28.97 Aligned_cols=62 Identities=15% Similarity=0.317 Sum_probs=39.9
Q ss_pred hhhHHHhhhhhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHhhhhcccchhhHHHHHHHHHHHHHhhcC
Q 018386 151 ENDLTSKINSKRAEVDRANERIEKLLASTEQLQLSNNEKDETIAKLKTQIAQMETGSKKWNTEISRLTQELELLRKSRT 229 (357)
Q Consensus 151 E~Dyt~lLK~K~~EvaQAtE~iqKL~q~~EeLQ~~nqeKDdeI~RLqak~aeMe~~~Kkk~eeIs~L~~eLe~lrk~r~ 229 (357)
..+|-.+.++..+.|...-.+....+ ...+-++++|+.+-.....+|..|++||..+|..-.
T Consensus 192 ~~~y~err~rNN~A~~kSR~~~k~~~-----------------~e~~~r~~~leken~~lr~~v~~l~~el~~~~~~~~ 253 (269)
T KOG3119|consen 192 DPEYKERRRRNNEAVRKSRDKRKQKE-----------------DEMAHRVAELEKENEALRTQVEQLKKELATLRRLFL 253 (269)
T ss_pred CHHHHHHHHhhhHHHHHhhhhHHHHH-----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35566666665555555555444333 444556666666666778888899999998886543
No 279
>PF05752 Calici_MSP: Calicivirus minor structural protein; InterPro: IPR008437 This family consists of minor structural proteins largely from the Caliciviridaei family of viruses, including Sapporo virus (Hu/Chiba/041413/2004/JP) and Sapporo virus (Hu/Ehime/04-1680/2004/JP). These viruses cause gastroenteritis. The function of this family is unknown.
Probab=31.00 E-value=1.4e+02 Score=27.99 Aligned_cols=60 Identities=17% Similarity=0.320 Sum_probs=44.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhHHHHHHhHHhHHHHHHHHHHHHHhhhhhhhchhhHHHHH
Q 018386 27 QQEQIETLVKEREILEDHLKMQHEKWVSDVRLYEDHISQMKSEIVAQELIHLLDAAKSDMVVGLKLREASL 97 (357)
Q Consensus 27 ~q~QvEsL~~ER~~LEa~ik~QhE~W~sdv~~lqdrLsqm~~el~~eE~~~~~EaAk~~l~LGlK~RE~~l 97 (357)
+|.||.-+ +.-+++|++ |+.+...|+-+-..+...|-...-..+|++| +-+|-.+-++.-
T Consensus 27 qqrqv~~~-------~~Qn~lqq~-w~~kqe~Lq~~~~dls~~La~ngpa~r~~sa---~~aGF~~v~Arr 86 (167)
T PF05752_consen 27 QQRQVDQL-------EKQNQLQQQ-WMNKQEQLQRRQQDLSRDLAVNGPALRYQSA---VSAGFDPVSARR 86 (167)
T ss_pred HHHHHHHH-------HHHHHHHHH-HHHHHHHHHHHHHHHHHHHhhhchHHHHHHH---HHcCCCHHHHHH
Confidence 55566543 667788876 9999999999999999888777777777754 457777766653
No 280
>PF10211 Ax_dynein_light: Axonemal dynein light chain; InterPro: IPR019347 Axonemal dynein light chain proteins play a dynamic role in flagellar and cilial motility. Eukaryotic cilia and flagella are complex organelles consisting of a core structure, the axoneme, which is composed of nine microtubule doublets forming a cylinder that surrounds a pair of central singlet microtubules. This ultra-structural arrangement seems to be one of the most stable micro-tubular assemblies known and is responsible for the flagellar and ciliary movement of a large number of organisms ranging from protozoan to mammals. This light chain interacts directly with the N-terminal half of the heavy chains [].
Probab=30.32 E-value=2.7e+02 Score=25.61 Aligned_cols=64 Identities=22% Similarity=0.326 Sum_probs=31.0
Q ss_pred hHHHhhhhhHHHHHHHHHHHHHHHHHHHHHhhhhhh-hhhHHHHHHHHHHhhhhcccchhhHHHHHHHHHHH
Q 018386 153 DLTSKINSKRAEVDRANERIEKLLASTEQLQLSNNE-KDETIAKLKTQIAQMETGSKKWNTEISRLTQELEL 223 (357)
Q Consensus 153 Dyt~lLK~K~~EvaQAtE~iqKL~q~~EeLQ~~nqe-KDdeI~RLqak~aeMe~~~Kkk~eeIs~L~~eLe~ 223 (357)
+|...+..-+.+..+=...++.|....+.++..+.+ +..+.-+.+.++. ..+..+..|+++|+.
T Consensus 124 ~l~~~i~~L~~e~~~L~~~~~~l~~~~e~~ek~~~e~~~~~~k~~~~ei~-------~lk~~~~ql~~~l~~ 188 (189)
T PF10211_consen 124 ELEEEIEELEEEKEELEKQVQELKNKCEQLEKREEELRQEEEKKHQEEID-------FLKKQNQQLKAQLEQ 188 (189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHhc
Confidence 333344444444555555555555555555433322 2333333333333 445567777777764
No 281
>KOG4360 consensus Uncharacterized coiled coil protein [Function unknown]
Probab=30.18 E-value=7.9e+02 Score=27.18 Aligned_cols=204 Identities=20% Similarity=0.210 Sum_probs=99.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH---HHhhhhhhhhhhhhHHHHHHhHHhHHHH-HHHHHHHHHhhhhh-------hh
Q 018386 20 LVKMLKSQQEQIETLVKEREILEDH---LKMQHEKWVSDVRLYEDHISQMKSEIVA-QELIHLLDAAKSDM-------VV 88 (357)
Q Consensus 20 LVkMLr~~q~QvEsL~~ER~~LEa~---ik~QhE~W~sdv~~lqdrLsqm~~el~~-eE~~~~~EaAk~~l-------~L 88 (357)
|-.+|-.+..++|--++-=..|=.. |+.+.++.-+-+.---|++.|..+++.- .|+-+-|-+|-.+- +.
T Consensus 67 lt~lle~k~~dlElaAkiGqsllk~nk~Lq~~nesLeEqv~~~~d~vvql~hels~k~ellr~ys~~~ees~~~~v~~~P 146 (596)
T KOG4360|consen 67 LTELLEEKRRDLELAAKIGQSLLKANKALQEDNESLEEQVDAPWDRVVQLGHELSRKDELLRGYSAAIEESEAASVCSTP 146 (596)
T ss_pred HHHHHhcccchhHHHHHHHHHHHhhhhhhhhhhhhhHhhhcchHHHHHHhhhhhhhhhhhhheeeeccccccccccccCC
Confidence 4445555555555333322222211 2444444555555555666666555544 34433333222111 11
Q ss_pred c--hhhHH------HHHHHHHhhhchhHHHHHHHHHHHHhcCCCCCCcchhhH-HhhhhhhhhhhhhhHhhhhhHHHhhh
Q 018386 89 G--LKLRE------ASLLKLMLEYTDDQLADFMAWFDLLRQKPKDGEPKSIEV-SAFLDERAFLWNQYKVMENDLTSKIN 159 (357)
Q Consensus 89 G--lK~RE------~~l~k~~lE~teDeL~DFka~~~~L~~~lke~SeKdkEV-sALlaEKdFVWNQ~k~ME~Dyt~lLK 159 (357)
| .-.|= .+.++.+|-..+.+...++.....|..+--...+|..-. ..++.+=+-.=.|...|-. .|.
T Consensus 147 ~~~~~s~S~~~~~~~EaL~ekLk~~~een~~lr~k~~llk~Et~~~~~keq~~y~~~~KelrdtN~q~~s~~e----el~ 222 (596)
T KOG4360|consen 147 LVSNESRSAFQRELLEALQEKLKPLEEENTQLRSKAMLLKTETLTYEEKEQQLYGDCVKELRDTNTQARSGQE----ELQ 222 (596)
T ss_pred CccCcchhhHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHH----HHH
Confidence 2 11111 234555666677778888888888887755544444333 3555555555556666533 344
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHh-------hhhhh-------hhhHHHHHHHHHHhhhhcccchhhHHHHHHHHHHHHH
Q 018386 160 SKRAEVDRANERIEKLLASTEQLQ-------LSNNE-------KDETIAKLKTQIAQMETGSKKWNTEISRLTQELELLR 225 (357)
Q Consensus 160 ~K~~EvaQAtE~iqKL~q~~EeLQ-------~~nqe-------KDdeI~RLqak~aeMe~~~Kkk~eeIs~L~~eLe~lr 225 (357)
+|-.|..+-.|.+.||...+--+| ..+.+ .-|--..+++++.||+----+--.+..+-+.||+.||
T Consensus 223 ~kt~el~~q~Ee~skLlsql~d~qkk~k~~~~Ekeel~~~Lq~~~da~~ql~aE~~EleDkyAE~m~~~~EaeeELk~lr 302 (596)
T KOG4360|consen 223 SKTKELSRQQEENSKLLSQLVDLQKKIKYLRHEKEELDEHLQAYKDAQRQLTAELEELEDKYAECMQMLHEAEEELKCLR 302 (596)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 555666666677766665543332 11111 1122223455555555433333344445556677776
Q ss_pred hh
Q 018386 226 KS 227 (357)
Q Consensus 226 k~ 227 (357)
+-
T Consensus 303 s~ 304 (596)
T KOG4360|consen 303 SC 304 (596)
T ss_pred cC
Confidence 53
No 282
>PF12998 ING: Inhibitor of growth proteins N-terminal histone-binding; InterPro: IPR024610 Histones undergo numerous post-translational modifications, including acetylation and methylation, at residues which are then probable docking sites for various chromatin remodelling complexes. Inhibitor of growth proteins (INGs) specifically bind to residues that have been thus modified. INGs carry a well-characterised C-terminal PHD-type zinc-finger domain, binding with lysine 4-tri-methylated histone H3 (H3K4me3), as well as this N-terminal domain that binds unmodified H3 tails. Although these two regions can bind histones independently, together they increase the apparent association of the ING for the H3 tail. This entry represents the N-terminal histone binding domain found in inhibitor proteins.; PDB: 4AFL_A.
Probab=30.16 E-value=2.7e+02 Score=21.87 Aligned_cols=70 Identities=14% Similarity=0.217 Sum_probs=44.0
Q ss_pred hhhhhHhhhhhHHHhhhhhHH---HHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHhhhhcccchhhHHHHHHH
Q 018386 143 LWNQYKVMENDLTSKINSKRA---EVDRANERIEKLLASTEQLQLSNNEKDETIAKLKTQIAQMETGSKKWNTEISRLTQ 219 (357)
Q Consensus 143 VWNQ~k~ME~Dyt~lLK~K~~---EvaQAtE~iqKL~q~~EeLQ~~nqeKDdeI~RLqak~aeMe~~~Kkk~eeIs~L~~ 219 (357)
+++.+.-++..+...++.-.. ...+.......++...+.+....++|=....+...-+ +.-|.+|..
T Consensus 31 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~~~~~~~l~deKv~lA~~~~d~v----------~~hi~rLD~ 100 (105)
T PF12998_consen 31 SQDLLEELDQQIQKFIKNHGSPSLSPEKRRELLKEIQEEYERALELSDEKVALAQQAYDLV----------DRHIRRLDQ 100 (105)
T ss_dssp HHHHHHHHHHHHHHHHTCTTS--S-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhcccccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHH
Confidence 556666666666666655432 3346666677777777777777788877776666655 456666665
Q ss_pred HHH
Q 018386 220 ELE 222 (357)
Q Consensus 220 eLe 222 (357)
++.
T Consensus 101 dl~ 103 (105)
T PF12998_consen 101 DLK 103 (105)
T ss_dssp CT-
T ss_pred HHH
Confidence 554
No 283
>PRK14162 heat shock protein GrpE; Provisional
Probab=30.00 E-value=63 Score=30.29 Aligned_cols=28 Identities=14% Similarity=0.278 Sum_probs=15.9
Q ss_pred HHHHHHHHHhhhhhhhhhHHHHHHHHHH
Q 018386 174 KLLASTEQLQLSNNEKDETIAKLKTQIA 201 (357)
Q Consensus 174 KL~q~~EeLQ~~nqeKDdeI~RLqak~a 201 (357)
.|.+.++.|+....+-.+...|++|+..
T Consensus 43 ~l~~~l~~l~~e~~elkd~~lR~~AEfe 70 (194)
T PRK14162 43 DLEKEIADLKAKNKDLEDKYLRSQAEIQ 70 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444445555444444567777777764
No 284
>PF07798 DUF1640: Protein of unknown function (DUF1640); InterPro: IPR024461 This family consists of uncharacterised proteins.
Probab=29.82 E-value=3.9e+02 Score=23.93 Aligned_cols=19 Identities=47% Similarity=0.546 Sum_probs=11.1
Q ss_pred hhhhhhhhhHHHHHHHHHH
Q 018386 183 QLSNNEKDETIAKLKTQIA 201 (357)
Q Consensus 183 Q~~nqeKDdeI~RLqak~a 201 (357)
+..+.+=+.+|..|++++.
T Consensus 130 ~e~~~ki~~ei~~lr~~iE 148 (177)
T PF07798_consen 130 QELNNKIDTEIANLRTEIE 148 (177)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3334444666777776665
No 285
>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the N-terminal domain of Seryl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa [].; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3QO8_A 3QO5_A 3QO7_A 3QNE_A 3LSQ_A 3LSS_A 2DQ3_B 1SET_A 1SER_A 1SRY_B ....
Probab=29.63 E-value=3e+02 Score=22.21 Aligned_cols=62 Identities=24% Similarity=0.364 Sum_probs=36.1
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHH---HHHhhhhcccchhhHHHHHHHHHHHHHh
Q 018386 165 VDRANERIEKLLASTEQLQLSNNEKDETIAKLKT---QIAQMETGSKKWNTEISRLTQELELLRK 226 (357)
Q Consensus 165 vaQAtE~iqKL~q~~EeLQ~~nqeKDdeI~RLqa---k~aeMe~~~Kkk~eeIs~L~~eLe~lrk 226 (357)
+...-+.-.+++..++.|+..-+.--.+|+.+.. +..++-..++..+++|..|+.++..+-.
T Consensus 31 i~~ld~~~r~l~~~~e~lr~~rN~~sk~I~~~~~~~~~~~~l~~e~~~lk~~i~~le~~~~~~e~ 95 (108)
T PF02403_consen 31 IIELDQERRELQQELEELRAERNELSKEIGKLKKAGEDAEELKAEVKELKEEIKELEEQLKELEE 95 (108)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHTTCCTHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444556666666666666555566666654 2445555666666666666666655543
No 286
>PRK05724 acetyl-CoA carboxylase carboxyltransferase subunit alpha; Validated
Probab=29.35 E-value=74 Score=31.99 Aligned_cols=25 Identities=40% Similarity=0.466 Sum_probs=14.4
Q ss_pred hhhHHHHHHHHHHHHHhhcCCCCcc
Q 018386 210 WNTEISRLTQELELLRKSRTASDTP 234 (357)
Q Consensus 210 k~eeIs~L~~eLe~lrk~r~a~~tp 234 (357)
..+||.+|+.+++.+++.--+.+||
T Consensus 33 ~~~~~~~l~~~~~~~~~~~~~~l~~ 57 (319)
T PRK05724 33 LSEEIERLEKKLEELTKKIYSNLTP 57 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCH
Confidence 3556666666666665555445555
No 287
>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure. It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.
Probab=29.31 E-value=1.6e+02 Score=23.17 Aligned_cols=30 Identities=30% Similarity=0.552 Sum_probs=19.3
Q ss_pred HHHHHhhhhcccchhhHHHHHHHHHHHHHh
Q 018386 197 KTQIAQMETGSKKWNTEISRLTQELELLRK 226 (357)
Q Consensus 197 qak~aeMe~~~Kkk~eeIs~L~~eLe~lrk 226 (357)
+.++.+.+.-....-.+|..|..+++.+|+
T Consensus 31 e~kLqeaE~rn~eL~~ei~~L~~e~ee~r~ 60 (61)
T PF08826_consen 31 ESKLQEAEKRNRELEQEIERLKKEMEELRS 60 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 344555555555667777888888877764
No 288
>PRK14473 F0F1 ATP synthase subunit B; Provisional
Probab=29.25 E-value=3.8e+02 Score=23.29 Aligned_cols=60 Identities=17% Similarity=0.287 Sum_probs=37.7
Q ss_pred hhhhhhhhHhhhhhHHHhhhhhHHHHHHHHHHHHHHHHHHHHH-hhhhhhhhhHHHHHHHH
Q 018386 140 RAFLWNQYKVMENDLTSKINSKRAEVDRANERIEKLLASTEQL-QLSNNEKDETIAKLKTQ 199 (357)
Q Consensus 140 KdFVWNQ~k~ME~Dyt~lLK~K~~EvaQAtE~iqKL~q~~EeL-Q~~nqeKDdeI~RLqak 199 (357)
+-|+|.-+.-|=..-...+.+.-.+++++.+.++.++...+.. ..+..+-++.|..-+.+
T Consensus 26 ~~fl~kpi~~~l~~R~~~I~~~l~~Ae~~~~ea~~~~~e~e~~l~~A~~ea~~ii~~A~~~ 86 (164)
T PRK14473 26 RTFLYRPVLNLLNERTRRIEESLRDAEKVREQLANAKRDYEAELAKARQEAAKIVAQAQER 86 (164)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5678887665555556677777778888888877777666554 44444444444444433
No 289
>PRK14474 F0F1 ATP synthase subunit B; Provisional
Probab=29.23 E-value=5.1e+02 Score=24.71 Aligned_cols=61 Identities=11% Similarity=0.193 Sum_probs=37.7
Q ss_pred hhhhhhhhHhhhhhHHHhhhhhHHHHHHHHHHHHHHHHHHHH-HhhhhhhhhhHHHHHHHHH
Q 018386 140 RAFLWNQYKVMENDLTSKINSKRAEVDRANERIEKLLASTEQ-LQLSNNEKDETIAKLKTQI 200 (357)
Q Consensus 140 KdFVWNQ~k~ME~Dyt~lLK~K~~EvaQAtE~iqKL~q~~Ee-LQ~~nqeKDdeI~RLqak~ 200 (357)
+-|+|.-+.-|=.+-...+...-.+++++.+.+++++...++ |+...++.+..|..-+.+.
T Consensus 23 ~~fl~kPi~~~l~eR~~~I~~~l~~Ae~~~~eA~~~~~e~e~~l~~a~~ea~~ii~~A~~eA 84 (250)
T PRK14474 23 RRFLYKPIIQVMKKRQQRIANRWQDAEQRQQEAGQEAERYRQKQQSLEQQRASFMAQAQEAA 84 (250)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 568888766555555556777667777777777766655443 4555555555555554443
No 290
>PRK14146 heat shock protein GrpE; Provisional
Probab=29.21 E-value=80 Score=29.95 Aligned_cols=37 Identities=14% Similarity=0.240 Sum_probs=21.6
Q ss_pred hhHHHHHHHHHHhhhhcccchhhHHHHHHHHHHHHHh
Q 018386 190 DETIAKLKTQIAQMETGSKKWNTEISRLTQELELLRK 226 (357)
Q Consensus 190 DdeI~RLqak~aeMe~~~Kkk~eeIs~L~~eLe~lrk 226 (357)
.++|..|++++.+++....++++...++..+.+++|+
T Consensus 53 ~~~~~~l~~~l~~l~~e~~el~d~~lR~~AdfeN~rk 89 (215)
T PRK14146 53 AETETSLQKELDNAKKEIESLKDSWARERAEFQNFKR 89 (215)
T ss_pred cchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3345555555555555555666666666666666665
No 291
>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein. This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.
Probab=29.15 E-value=6.2e+02 Score=25.63 Aligned_cols=45 Identities=9% Similarity=0.106 Sum_probs=19.1
Q ss_pred hhhhhhhhhhhhhHhhhhhHHHhhhhhHHHHHHHHHHHHHHHHHH
Q 018386 135 AFLDERAFLWNQYKVMENDLTSKINSKRAEVDRANERIEKLLAST 179 (357)
Q Consensus 135 ALlaEKdFVWNQ~k~ME~Dyt~lLK~K~~EvaQAtE~iqKL~q~~ 179 (357)
++.++.+....++...+..|......-+.+.++....+..++..+
T Consensus 144 ~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 188 (457)
T TIGR01000 144 GYLAQVESLTSETQQQNDKSQTQNEAAEKTKAQLDQQISKTDQKL 188 (457)
T ss_pred HHHHHHHHHHHHHhhhhhhhHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 334444444455444444444333343344443333333333333
No 292
>COG1842 PspA Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms]
Probab=29.10 E-value=2.5e+02 Score=26.85 Aligned_cols=56 Identities=25% Similarity=0.310 Sum_probs=36.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHhhhhcccchhhHHHHHHHHHHHH
Q 018386 162 RAEVDRANERIEKLLASTEQLQLSNNEKDETIAKLKTQIAQMETGSKKWNTEISRLTQELELL 224 (357)
Q Consensus 162 ~~EvaQAtE~iqKL~q~~EeLQ~~nqeKDdeI~RLqak~aeMe~~~Kkk~eeIs~L~~eLe~l 224 (357)
+.=+.+|-+.++.|....+.++.+.+.=++...+|+..+..+ ...|..++...+.+
T Consensus 84 E~LAr~al~~~~~le~~~~~~~~~~~~~~~~~~~l~~~~~~L-------e~Ki~e~~~~~~~l 139 (225)
T COG1842 84 EDLAREALEEKQSLEDLAKALEAELQQAEEQVEKLKKQLAAL-------EQKIAELRAKKEAL 139 (225)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHH
Confidence 344566777778888888888777777777777777777744 44455555554444
No 293
>TIGR03319 YmdA_YtgF conserved hypothetical protein YmdA/YtgF.
Probab=29.02 E-value=4.1e+02 Score=28.11 Aligned_cols=12 Identities=25% Similarity=0.468 Sum_probs=8.7
Q ss_pred cCCCCCCcceec
Q 018386 289 LGGKNGDNVVVN 300 (357)
Q Consensus 289 ~~~~~~~n~~~~ 300 (357)
--||.|+||-.=
T Consensus 219 iigreGrnir~~ 230 (514)
T TIGR03319 219 IIGREGRNIRAL 230 (514)
T ss_pred ccCCCcchHHHH
Confidence 468999998543
No 294
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=28.87 E-value=3.1e+02 Score=27.44 Aligned_cols=50 Identities=24% Similarity=0.330 Sum_probs=29.5
Q ss_pred HHHHHHHHHhhhhhhhhhHHHHHHHHHHhhhhcccchhhHHHHHHHHHHH
Q 018386 174 KLLASTEQLQLSNNEKDETIAKLKTQIAQMETGSKKWNTEISRLTQELEL 223 (357)
Q Consensus 174 KL~q~~EeLQ~~nqeKDdeI~RLqak~aeMe~~~Kkk~eeIs~L~~eLe~ 223 (357)
.|+..+++||+...+=.+.|-+|.-+.+.++...++.-.+.++|++.+..
T Consensus 153 eL~~eleele~e~ee~~erlk~le~E~s~LeE~~~~l~~ev~~L~~r~~E 202 (290)
T COG4026 153 ELLKELEELEAEYEEVQERLKRLEVENSRLEEMLKKLPGEVYDLKKRWDE 202 (290)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHH
Confidence 46666677776666666777777666665555555554455554444433
No 295
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=28.78 E-value=1.9e+02 Score=25.81 Aligned_cols=18 Identities=33% Similarity=0.569 Sum_probs=8.5
Q ss_pred chhhHHHHHHHHHHHHHh
Q 018386 209 KWNTEISRLTQELELLRK 226 (357)
Q Consensus 209 kk~eeIs~L~~eLe~lrk 226 (357)
+.++||.+.+.+++.|++
T Consensus 165 ~lk~el~~~~~~~~~Lkk 182 (192)
T PF05529_consen 165 KLKKELEKKEKEIEALKK 182 (192)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 444444444444444443
No 296
>PF13094 CENP-Q: CENP-Q, a CENPA-CAD centromere complex subunit
Probab=28.72 E-value=2.8e+02 Score=24.16 Aligned_cols=36 Identities=19% Similarity=0.161 Sum_probs=19.4
Q ss_pred hhhHHHhhhhhHHHHHH---HHHHHHHHHHHHHHHhhhh
Q 018386 151 ENDLTSKINSKRAEVDR---ANERIEKLLASTEQLQLSN 186 (357)
Q Consensus 151 E~Dyt~lLK~K~~EvaQ---AtE~iqKL~q~~EeLQ~~n 186 (357)
+-||..+++.+.+...| +.+.++.|+..++..+...
T Consensus 19 ~~~~e~ll~~~~~LE~qL~~~~~~l~lLq~e~~~~e~~l 57 (160)
T PF13094_consen 19 SFDYEQLLDRKRALERQLAANLHQLELLQEEIEKEEAAL 57 (160)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44677777777555543 3444455555444444333
No 297
>PF07445 priB_priC: Primosomal replication protein priB and priC; InterPro: IPR010890 This family contains the bacterial primosomal replication proteins priB and priC (approximately 180 residues long). In Escherichia coli, these function in the assembly of the primosome [].
Probab=28.71 E-value=3.8e+02 Score=24.31 Aligned_cols=55 Identities=15% Similarity=0.343 Sum_probs=33.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhhhhhhhhhhhhHHHHHHhHHhH
Q 018386 11 LERQKRDKILVKMLKSQQEQIETLVK-EREILEDHLKMQHEKWVSDVRLYEDHISQMKSE 69 (357)
Q Consensus 11 s~r~~W~riLVkMLr~~q~QvEsL~~-ER~~LEa~ik~QhE~W~sdv~~lqdrLsqm~~e 69 (357)
..+.+|.+-|..|++..+.+++.--. +.-.|.-+|...|- |...|+.=|..++..
T Consensus 112 ~~hqe~erRL~~mi~~~e~~l~~~~~~~~~~lq~ei~a~e~----RL~RCr~Ai~~iE~~ 167 (173)
T PF07445_consen 112 AQHQEYERRLLAMIQEREQQLEQAQSFEQQQLQQEILALEQ----RLQRCRQAIEKIEEQ 167 (173)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHH
Confidence 35789999999999998887774211 44444444444444 455555555554433
No 298
>CHL00198 accA acetyl-CoA carboxylase carboxyltransferase alpha subunit; Provisional
Probab=28.58 E-value=71 Score=32.22 Aligned_cols=15 Identities=20% Similarity=0.538 Sum_probs=10.3
Q ss_pred ccccccccccCcccc
Q 018386 324 KAVDVIPILDTPKLF 338 (357)
Q Consensus 324 k~~~~~~~~e~pklf 338 (357)
-.+++|.+.|||=-|
T Consensus 153 f~lPIItlvDTpGA~ 167 (322)
T CHL00198 153 FGLPILTFIDTPGAW 167 (322)
T ss_pred cCCCEEEEEeCCCcC
Confidence 366777777887654
No 299
>KOG2129 consensus Uncharacterized conserved protein H4 [Function unknown]
Probab=28.36 E-value=3.4e+02 Score=29.33 Aligned_cols=64 Identities=25% Similarity=0.325 Sum_probs=36.9
Q ss_pred HHHHHHHHHhhhhhhhhhHHHHHHHHHHhh--------hhcccchhhHHHHHHHHHHHHHhhcCCCCcccccccc
Q 018386 174 KLLASTEQLQLSNNEKDETIAKLKTQIAQM--------ETGSKKWNTEISRLTQELELLRKSRTASDTPVLNRCT 240 (357)
Q Consensus 174 KL~q~~EeLQ~~nqeKDdeI~RLqak~aeM--------e~~~Kkk~eeIs~L~~eLe~lrk~r~a~~tpvl~~ct 240 (357)
||...++.||.--..|...+..|.-++.+| |.++...=.+|.+|++|--.|-+-- +-||+.+-+
T Consensus 162 Klm~ki~Klen~t~~kq~~leQLRre~V~lentlEQEqEalvN~LwKrmdkLe~ekr~Lq~Kl---Dqpvs~p~~ 233 (552)
T KOG2129|consen 162 KLMNKIRKLENKTLLKQNTLEQLRREAVQLENTLEQEQEALVNSLWKRMDKLEQEKRYLQKKL---DQPVSTPSL 233 (552)
T ss_pred HHHHHHHHhhhhhHHhhhhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---cCcccCCCc
Confidence 555555555554455555555555555544 4555566667888888876665433 455555443
No 300
>PHA03247 large tegument protein UL36; Provisional
Probab=28.11 E-value=2e+02 Score=36.94 Aligned_cols=72 Identities=21% Similarity=0.378 Sum_probs=51.3
Q ss_pred HHHHHHHHHHHHHHHHHH--HHHHHHHHHhhhhhhhhhhhhHHHHHHhHHhHHHHHHHHHHHHHhhhhhhhchhhHHH
Q 018386 20 LVKMLKSQQEQIETLVKE--REILEDHLKMQHEKWVSDVRLYEDHISQMKSEIVAQELIHLLDAAKSDMVVGLKLREA 95 (357)
Q Consensus 20 LVkMLr~~q~QvEsL~~E--R~~LEa~ik~QhE~W~sdv~~lqdrLsqm~~el~~eE~~~~~EaAk~~l~LGlK~RE~ 95 (357)
+|.|-+++-.++|.++++ |.|-+..-+.++|+|.+|+.-+=+++.. +.++...|+.++-+.|-. =|-+.|++
T Consensus 1286 ~v~~ar~R~~Ele~a~ad~~~~~~~~~~r~~~erW~~dv~AaL~r~Et-rseFDa~EL~RLrd~Aa~---~gYd~~~f 1359 (3151)
T PHA03247 1286 VVGATRRRADELEAAAADLAEKMAARRARASRERWAADVEAALDRVEN-RAEFDAVELRRLQALAAT---HGYNPRDF 1359 (3151)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-hhhccHHHHHHHHHHHHh---cCCChHHH
Confidence 777788888888888764 5666666678999999999988887754 556777887766554322 34444443
No 301
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=27.97 E-value=1.2e+03 Score=28.41 Aligned_cols=64 Identities=17% Similarity=0.173 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHH-HHhhhh--cccchhhHHHHHHHHHHHHHhhcC
Q 018386 165 VDRANERIEKLLASTEQLQLSNNEKDETIAKLKTQ-IAQMET--GSKKWNTEISRLTQELELLRKSRT 229 (357)
Q Consensus 165 vaQAtE~iqKL~q~~EeLQ~~nqeKDdeI~RLqak-~aeMe~--~~Kkk~eeIs~L~~eLe~lrk~r~ 229 (357)
++-+.+.|..|+..++.++..-++-.+ ..|.+.+ ...+|- +-.+++-+..-+.+++|.++.-..
T Consensus 625 ~~~l~~~i~sL~~~~~~~~~~l~k~~e-l~r~~~e~~~~~ek~~~e~~~e~~lk~~q~~~eq~~~E~~ 691 (1317)
T KOG0612|consen 625 IAELKEEISSLEETLKAGKKELLKVEE-LKRENQERISDSEKEALEIKLERKLKMLQNELEQENAEHH 691 (1317)
T ss_pred HHHHHhHHHHHHHHHHhhhhHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555555555554432222222 2222222 222222 444556666667777777665543
No 302
>PF00804 Syntaxin: Syntaxin; InterPro: IPR006011 Syntaxins A and B are nervous system-specific proteins implicated in the docking of synaptic vesicles with the presynaptic plasma membrane. Syntaxins are a family of receptors for intracellular transport vesicles. Each target membrane may be identified by a specific member of the syntaxin family []. Members of the syntaxin family [, ] have a size ranging from 30 Kd to 40 Kd; a C-terminal extremity which is highly hydrophobic and anchors the protein on the cytoplasmic surface of cellular membranes; a central, well conserved region, which seems to be in a coiled-coil conformation. ; GO: 0016020 membrane; PDB: 1S94_B 1EZ3_A 3C98_B 1BR0_A 1FIO_A 2XHE_B.
Probab=27.87 E-value=2.2e+02 Score=21.61 Aligned_cols=60 Identities=20% Similarity=0.350 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhh----hhHHHHHHHHHHhhhhcccchhhHHHHHHHHHHHHHhh
Q 018386 164 EVDRANERIEKLLASTEQLQLSNNEK----DETIAKLKTQIAQMETGSKKWNTEISRLTQELELLRKS 227 (357)
Q Consensus 164 EvaQAtE~iqKL~q~~EeLQ~~nqeK----DdeI~RLqak~aeMe~~~Kkk~eeIs~L~~eLe~lrk~ 227 (357)
+|......|.++...+++|+...... +++ ..++ .+|+.++.+-+..+..+...|+.|.+.
T Consensus 8 ~v~~i~~~i~~i~~~~~~l~~l~~~~l~~~~~d-~~~~---~el~~l~~~i~~~~~~~~~~lk~l~~~ 71 (103)
T PF00804_consen 8 EVQEIREDIDKIKEKLNELRKLHKKILSSPDQD-SELK---RELDELTDEIKQLFQKIKKRLKQLSKD 71 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTSSSHH-HHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcc-hhHH---HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555555555555554222111 011 2222 233444455566666677777777666
No 303
>PF03399 SAC3_GANP: SAC3/GANP/Nin1/mts3/eIF-3 p25 family; InterPro: IPR005062 This large family includes diverse proteins involved in large complexes [, , ]. The alignment contains one highly conserved negatively charged residue and one highly conserved positively charged residue that are probably important for the function of these proteins. The family includes the yeast nuclear export factor Sac3 [], and mammalian GANP/MCM3-associated proteins, which facilitate the nuclear localisation of MCM3, a protein that associates with chromatin in the G1 phase of the cell-cycle. The 26S protease (or 26S proteasome) is responsible for degrading ubiquitin conjugates. It consists of 19S regulatory complexes associated with the ends of 20S proteasomes. The 19S regulatory complex is composed of about 20 different polypeptides and confers ATP-dependence and substrate specificity to the 26S enzyme. The conserved region occurs at the C-terminal of the Nin1-like regulatory subunit [, , ]. This family includes several eukaryotic translation initiation factor 3 subunit 11 (eIF-3 p25) proteins. Eukaryotic initiation factor 3 (eIF3) is a multisubunit complex that is required for binding of mRNA to 40 S ribosomal subunits, stabilisation of ternary complex binding to 40 S subunits, and dissociation of 40 and 60 S subunits [].; PDB: 3T5V_D.
Probab=27.86 E-value=1.7e+02 Score=25.50 Aligned_cols=18 Identities=28% Similarity=0.811 Sum_probs=16.0
Q ss_pred hhhhhhhhhHhhhhhHHH
Q 018386 139 ERAFLWNQYKVMENDLTS 156 (357)
Q Consensus 139 EKdFVWNQ~k~ME~Dyt~ 156 (357)
.=+|+|+|++-+-+|++-
T Consensus 30 ~y~fi~drlRsiRqDl~v 47 (204)
T PF03399_consen 30 DYNFIWDRLRSIRQDLTV 47 (204)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHhHHHHhhHHH
Confidence 348999999999999986
No 304
>PRK04325 hypothetical protein; Provisional
Probab=27.64 E-value=2.2e+02 Score=22.75 Aligned_cols=40 Identities=20% Similarity=0.343 Sum_probs=21.7
Q ss_pred HHHHHhhhhhhhhhHHHHHHHHHHhhhhcccchhhHHHHHHHHHHHH
Q 018386 178 STEQLQLSNNEKDETIAKLKTQIAQMETGSKKWNTEISRLTQELELL 224 (357)
Q Consensus 178 ~~EeLQ~~nqeKDdeI~RLqak~aeMe~~~Kkk~eeIs~L~~eLe~l 224 (357)
-++.|+.-.--=++.|..|..-++ +-..+|.+|...|..|
T Consensus 10 Ri~~LE~klAfQE~tIe~LN~vv~-------~Qq~~I~~L~~ql~~L 49 (74)
T PRK04325 10 RITELEIQLAFQEDLIDGLNATVA-------RQQQTLDLLQAQLRLL 49 (74)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHH
Confidence 344444333333566666666665 4445566666666665
No 305
>KOG4403 consensus Cell surface glycoprotein STIM, contains SAM domain [General function prediction only]
Probab=27.60 E-value=5.5e+02 Score=27.94 Aligned_cols=122 Identities=20% Similarity=0.249 Sum_probs=69.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhh--hhhhhhhhhHHHHHHhHHhHHHHHHHHHHHHHhhhhhhhc--------
Q 018386 20 LVKMLKSQQEQIETLVKEREILEDHLKMQH--EKWVSDVRLYEDHISQMKSEIVAQELIHLLDAAKSDMVVG-------- 89 (357)
Q Consensus 20 LVkMLr~~q~QvEsL~~ER~~LEa~ik~Qh--E~W~sdv~~lqdrLsqm~~el~~eE~~~~~EaAk~~l~LG-------- 89 (357)
|-+||-+.+..-+..+.|.-+||..++.-. .-.++++.+-+.+ .+ -|-++-.++.|+-.|-..
T Consensus 264 lQk~Lekar~e~rnvavek~~lerkl~ea~rl~elreg~e~e~~r-ke------lE~lR~~L~kAEkele~nS~wsaP~a 336 (575)
T KOG4403|consen 264 LQKRLEKAREEQRNVAVEKLDLERKLDEAPRLSELREGVENETSR-KE------LEQLRVALEKAEKELEANSSWSAPLA 336 (575)
T ss_pred HHHHHHHHHHhhhchhhhhhhHHHHHhhhhhhhhhhcchhHHHHH-HH------HHHHHHHHHHHHHHHHhccCCCCcHH
Confidence 677888888877778888888887775111 1112233333322 00 111222222222222111
Q ss_pred -------hhhHHHHHHHHHhhhchhHHHHHHHHHHHHhcCCCC---------CC-------------cchhhHHhhhhhh
Q 018386 90 -------LKLREASLLKLMLEYTDDQLADFMAWFDLLRQKPKD---------GE-------------PKSIEVSAFLDER 140 (357)
Q Consensus 90 -------lK~RE~~l~k~~lE~teDeL~DFka~~~~L~~~lke---------~S-------------eKdkEVsALlaEK 140 (357)
--+-|..-|+++-++++-+|.--+...+.|+.+-.. ++ .-=.||.++|+|+
T Consensus 337 LQ~wLq~T~E~E~q~~~kkrqnaekql~~Ake~~eklkKKrssv~gtl~vahgsslDdVD~kIleak~al~evtt~lrEr 416 (575)
T KOG4403|consen 337 LQKWLQLTHEVEVQYYNKKRQNAEKQLKEAKEMAEKLKKKRSSVFGTLHVAHGSSLDDVDHKILEAKSALSEVTTLLRER 416 (575)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhcchheeeeeccccchhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 123466667888888888887777777888776222 11 2335788889999
Q ss_pred hhhhhhhH
Q 018386 141 AFLWNQYK 148 (357)
Q Consensus 141 dFVWNQ~k 148 (357)
-|-|-|.-
T Consensus 417 l~RWqQIE 424 (575)
T KOG4403|consen 417 LHRWQQIE 424 (575)
T ss_pred HHHHHHHH
Confidence 99998854
No 306
>PF12562 DUF3746: Protein of unknown function (DUF3746); InterPro: IPR022219 This C-terminal domain characterises the poxvirus I6 proteins, it is approximately 40 amino acids in length. The family is found in association with PF04595 from PFAM.
Probab=27.58 E-value=25 Score=25.70 Aligned_cols=12 Identities=58% Similarity=0.689 Sum_probs=9.6
Q ss_pred cccccccccCCC
Q 018386 340 SKFKVPKLKNSF 351 (357)
Q Consensus 340 s~fk~pklk~~~ 351 (357)
|+|.+|+|+++-
T Consensus 1 StF~~PtL~v~~ 12 (37)
T PF12562_consen 1 STFDVPTLKVSK 12 (37)
T ss_pred CCccCCeeeccc
Confidence 689999998654
No 307
>PHA03187 UL14 tegument protein; Provisional
Probab=27.52 E-value=2.5e+02 Score=28.62 Aligned_cols=42 Identities=21% Similarity=0.393 Sum_probs=34.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhHHHHHHh
Q 018386 24 LKSQQEQIETLVKEREILEDHLKMQHEKWVSDVRLYEDHISQ 65 (357)
Q Consensus 24 Lr~~q~QvEsL~~ER~~LEa~ik~QhE~W~sdv~~lqdrLsq 65 (357)
.+.-|.-||+.++-|++|.....+++-..+++...-+|.|-.
T Consensus 74 ar~Iq~rVEeQ~a~r~iL~~nRRfL~PdFid~lD~~ED~L~e 115 (322)
T PHA03187 74 ARALAQRVEAQAAVGEILDRHRRFLHPDFIDKFDSREDSIVE 115 (322)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhcChHHHHHHHHHHHHhhh
Confidence 344578899999999999999999999877777777766655
No 308
>PLN02939 transferase, transferring glycosyl groups
Probab=27.20 E-value=9.5e+02 Score=28.09 Aligned_cols=131 Identities=21% Similarity=0.267 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH------------------HhhhhhhhhhhhhHHHHHHhHHhHHHHHHHHHHHHHhhhh
Q 018386 24 LKSQQEQIETLVKEREILEDHL------------------KMQHEKWVSDVRLYEDHISQMKSEIVAQELIHLLDAAKSD 85 (357)
Q Consensus 24 Lr~~q~QvEsL~~ER~~LEa~i------------------k~QhE~W~sdv~~lqdrLsqm~~el~~eE~~~~~EaAk~~ 85 (357)
.....+-+--|-+||..|++-+ -.|.|-|-+.|..+|+-|.-+- ...|-.-.+-
T Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~----- 323 (977)
T PLN02939 252 VAETEERVFKLEKERSLLDASLRELESKFIVAQEDVSKLSPLQYDCWWEKVENLQDLLDRAT---NQVEKAALVL----- 323 (977)
T ss_pred HHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccchhHHHHHHHHHHHHHHHHHHH---HHHHHHHHHh-----
Q ss_pred hhhchhhHHHHHHHHHhhhchhHHHHHHHHHHHHhcCCCC--CCcchhhHHhhhhhhhhhhhhhHhhhhhHHHhhhhhHH
Q 018386 86 MVVGLKLREASLLKLMLEYTDDQLADFMAWFDLLRQKPKD--GEPKSIEVSAFLDERAFLWNQYKVMENDLTSKINSKRA 163 (357)
Q Consensus 86 l~LGlK~RE~~l~k~~lE~teDeL~DFka~~~~L~~~lke--~SeKdkEVsALlaEKdFVWNQ~k~ME~Dyt~lLK~K~~ 163 (357)
++=.|++.-++.|..-|++ .++-.++.-.|+.+| .+-+|.-+..--..-++
T Consensus 324 ---------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~ 376 (977)
T PLN02939 324 ---------------------DQNQDLRDKVDKLEASLKEANVSKFSSYKVELLQQK------LKLLEERLQASDHEIHS 376 (977)
T ss_pred ---------------------ccchHHHHHHHHHHHHHHHhhHhhhhHHHHHHHHHH------HHHHHHHHHhhHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhh
Q 018386 164 EVDRANERIEKLLASTEQLQLSNNEK 189 (357)
Q Consensus 164 EvaQAtE~iqKL~q~~EeLQ~~nqeK 189 (357)
.+.--++.++.+|+++..|-..+.++
T Consensus 377 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 402 (977)
T PLN02939 377 YIQLYQESIKEFQDTLSKLKEESKKR 402 (977)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhcc
No 309
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=27.17 E-value=1.2e+03 Score=28.30 Aligned_cols=26 Identities=23% Similarity=0.399 Sum_probs=14.5
Q ss_pred hhhhHHHhhhhhHHHHHHHHHHHHHH
Q 018386 150 MENDLTSKINSKRAEVDRANERIEKL 175 (357)
Q Consensus 150 ME~Dyt~lLK~K~~EvaQAtE~iqKL 175 (357)
+|.+|.-.++....+..|.+-.-..+
T Consensus 668 ~e~~~e~~lk~~q~~~eq~~~E~~~~ 693 (1317)
T KOG0612|consen 668 LEIKLERKLKMLQNELEQENAEHHRL 693 (1317)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55556656666555555555544444
No 310
>KOG3990 consensus Uncharacterized conserved protein [Function unknown]
Probab=27.04 E-value=1.2e+02 Score=30.64 Aligned_cols=62 Identities=16% Similarity=0.222 Sum_probs=40.3
Q ss_pred HHHHHHHHHHhcCCCC----CCcchhhHHhhhhhhhhhhhhhHhhhhhHHHhhhhhHHH-HHHHHHHHHHHHHHHHHHh
Q 018386 110 ADFMAWFDLLRQKPKD----GEPKSIEVSAFLDERAFLWNQYKVMENDLTSKINSKRAE-VDRANERIEKLLASTEQLQ 183 (357)
Q Consensus 110 ~DFka~~~~L~~~lke----~SeKdkEVsALlaEKdFVWNQ~k~ME~Dyt~lLK~K~~E-vaQAtE~iqKL~q~~EeLQ 183 (357)
.-++.+|.-|+.-|.+ ..+||+.|+.|-+. ++|-..+.+++.| |+|-+-++..++..+++|.
T Consensus 228 ~~lkeeia~Lkk~L~qkdq~ileKdkqisnLKad------------~e~~~~~ek~Hke~v~qL~~k~~~~lk~~a~l~ 294 (305)
T KOG3990|consen 228 QKLKEEIARLKKLLHQKDQLILEKDKQISNLKAD------------KEYQKELEKKHKERVQQLQKKKEESLKAIAQLR 294 (305)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHhhhhhhhccCcc------------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3344444444444444 46899999998775 1222556667766 7788888888888777776
No 311
>PRK14163 heat shock protein GrpE; Provisional
Probab=26.96 E-value=68 Score=30.66 Aligned_cols=28 Identities=18% Similarity=0.326 Sum_probs=15.1
Q ss_pred HHHHHHHHHhhhhhhhhhHHHHHHHHHH
Q 018386 174 KLLASTEQLQLSNNEKDETIAKLKTQIA 201 (357)
Q Consensus 174 KL~q~~EeLQ~~nqeKDdeI~RLqak~a 201 (357)
.|.+.++.|+....+.-|.+.|++|++.
T Consensus 44 ~l~~~l~~l~~e~~el~d~~lR~~AEfe 71 (214)
T PRK14163 44 GLTAQLDQVRTALGERTADLQRLQAEYQ 71 (214)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444566677777663
No 312
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=26.88 E-value=1.3e+02 Score=31.96 Aligned_cols=38 Identities=11% Similarity=0.213 Sum_probs=25.3
Q ss_pred hhHHHHHHHHHHhhhhcccchhhHHHHHHHHHHHHHhh
Q 018386 190 DETIAKLKTQIAQMETGSKKWNTEISRLTQELELLRKS 227 (357)
Q Consensus 190 DdeI~RLqak~aeMe~~~Kkk~eeIs~L~~eLe~lrk~ 227 (357)
..+|..|+.++.+|.....+...+|+.|+.|++.|+.-
T Consensus 82 EKqLaaLrqElq~~saq~~dle~KIkeLEaE~~~Lk~Q 119 (475)
T PRK13729 82 QKQYEEIRRELDVLNKQRGDDQRRIEKLGQDNAALAEQ 119 (475)
T ss_pred HHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHH
Confidence 44555666666666666667777777777777777655
No 313
>PF10046 BLOC1_2: Biogenesis of lysosome-related organelles complex-1 subunit 2 ; InterPro: IPR019269 This entry represents a family of proteins that play a role in cellular proliferation, as well as in the biogenesis of specialised organelles of the endosomal-lysosomal system [].
Probab=26.84 E-value=2.6e+02 Score=23.02 Aligned_cols=44 Identities=20% Similarity=0.299 Sum_probs=26.3
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHH
Q 018386 158 INSKRAEVDRANERIEKLLASTEQLQLSNNEKDETIAKLKTQIA 201 (357)
Q Consensus 158 LK~K~~EvaQAtE~iqKL~q~~EeLQ~~nqeKDdeI~RLqak~a 201 (357)
|+.|..+...--..|..+-..+..|...++.=|.=+.+|++++.
T Consensus 54 l~~k~~~l~~~l~~Id~Ie~~V~~LE~~v~~LD~ysk~LE~k~k 97 (99)
T PF10046_consen 54 LNQKYEELQPYLQQIDQIEEQVTELEQTVYELDEYSKELESKFK 97 (99)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 33444444444444555555666676667766777777777765
No 314
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=26.55 E-value=3.1e+02 Score=29.36 Aligned_cols=53 Identities=21% Similarity=0.299 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHhhhhhhhhhHH-HHHHHHHHhhhhcccchhhHHHHHHHHHHHH
Q 018386 172 IEKLLASTEQLQLSNNEKDETI-AKLKTQIAQMETGSKKWNTEISRLTQELELL 224 (357)
Q Consensus 172 iqKL~q~~EeLQ~~nqeKDdeI-~RLqak~aeMe~~~Kkk~eeIs~L~~eLe~l 224 (357)
-..|++.++.|+.-.+.=|..| .+|+++-.++.......++++.+|...|+.|
T Consensus 82 N~~l~~eN~~L~~r~~~id~~i~~av~~~~~~~~~~~~ql~~~~~~~~~~l~~l 135 (472)
T TIGR03752 82 NEALKAENERLQKREQSIDQQIQQAVQSETQELTKEIEQLKSERQQLQGLIDQL 135 (472)
T ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555543222223222 2333333344444444445555554444444
No 315
>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold). The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.
Probab=26.55 E-value=4.5e+02 Score=23.14 Aligned_cols=72 Identities=19% Similarity=0.322 Sum_probs=40.3
Q ss_pred HhhhhhhhhhhhhhHhhhhhHHHhhhhhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHhhhhcccc
Q 018386 134 SAFLDERAFLWNQYKVMENDLTSKINSKRAEVDRANERIEKLLASTEQLQLSNNEKDETIAKLKTQIAQMETGSKK 209 (357)
Q Consensus 134 sALlaEKdFVWNQ~k~ME~Dyt~lLK~K~~EvaQAtE~iqKL~q~~EeLQ~~nqeKDdeI~RLqak~aeMe~~~Kk 209 (357)
.+|.+-++=.-|++..|+...-+ .|.=..|.++=++. |...+..|+..+..--.-|..||+++.+.......
T Consensus 5 ~~l~as~~el~n~La~Le~slE~-~K~S~~eL~kqkd~---L~~~l~~L~~q~~s~~qr~~eLqaki~ea~~~le~ 76 (107)
T PF09304_consen 5 EALEASQNELQNRLASLERSLED-EKTSQGELAKQKDQ---LRNALQSLQAQNASRNQRIAELQAKIDEARRNLED 76 (107)
T ss_dssp ---------HHHHHHHHHHHHHH-HHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHHHHHHH-HHhhHHHHHHhHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46777788888899888887663 33333444333332 66667777766766677788888887755554443
No 316
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].
Probab=26.51 E-value=1.5e+02 Score=30.04 Aligned_cols=61 Identities=20% Similarity=0.284 Sum_probs=43.2
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHhhhhcccchhhHHHHHHHHHHHHHhh
Q 018386 167 RANERIEKLLASTEQLQLSNNEKDETIAKLKTQIAQMETGSKKWNTEISRLTQELELLRKS 227 (357)
Q Consensus 167 QAtE~iqKL~q~~EeLQ~~nqeKDdeI~RLqak~aeMe~~~Kkk~eeIs~L~~eLe~lrk~ 227 (357)
.|--+|+.|.+.++.|.-..+-|-=-|.-|+|-+.+--.-+.+.+.+++-|.+|.+.|..+
T Consensus 15 ~aLqKIqelE~QldkLkKE~qQrQfQleSlEAaLqKQKqK~e~ek~e~s~LkREnq~l~e~ 75 (307)
T PF10481_consen 15 RALQKIQELEQQLDKLKKERQQRQFQLESLEAALQKQKQKVEEEKNEYSALKRENQSLMES 75 (307)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHHHH
Confidence 4666788888888888877777777777777776655555556666777777766665544
No 317
>PF14915 CCDC144C: CCDC144C protein coiled-coil region
Probab=26.49 E-value=5.7e+02 Score=26.13 Aligned_cols=93 Identities=22% Similarity=0.208 Sum_probs=59.0
Q ss_pred hhHHhhhhhhhhhhhhhHhhhhhHHHhhhhhHHHHHH-HHHHHHHHHHHHH-HHhhhhhhhhhHHHHHHHHHHhhhhccc
Q 018386 131 IEVSAFLDERAFLWNQYKVMENDLTSKINSKRAEVDR-ANERIEKLLASTE-QLQLSNNEKDETIAKLKTQIAQMETGSK 208 (357)
Q Consensus 131 kEVsALlaEKdFVWNQ~k~ME~Dyt~lLK~K~~EvaQ-AtE~iqKL~q~~E-eLQ~~nqeKDdeI~RLqak~aeMe~~~K 208 (357)
.||.-|.-|-|-+-||-.-.|+-|..=+ |+.. -|+..++-+.-+| -|--..-.+...+.-|.|+-+-+-+...
T Consensus 6 ~eia~LrlEidtik~q~qekE~ky~edi-----ei~Kekn~~Lqk~lKLneE~ltkTi~qy~~QLn~L~aENt~L~SkLe 80 (305)
T PF14915_consen 6 DEIAMLRLEIDTIKNQNQEKEKKYLEDI-----EILKEKNDDLQKSLKLNEETLTKTIFQYNGQLNVLKAENTMLNSKLE 80 (305)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHH-----HHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhHHHHHHHHHHHhHHHH
Confidence 4677788888889999999999998332 2211 1222232222222 2323333345556667777666666666
Q ss_pred chhhHHHHHHHHHHHHHhhc
Q 018386 209 KWNTEISRLTQELELLRKSR 228 (357)
Q Consensus 209 kk~eeIs~L~~eLe~lrk~r 228 (357)
+-+..-.+|+.|+|+.|+.=
T Consensus 81 ~EKq~kerLEtEiES~rsRL 100 (305)
T PF14915_consen 81 KEKQNKERLETEIESYRSRL 100 (305)
T ss_pred HhHHHHHHHHHHHHHHHHHH
Confidence 77888899999999998753
No 318
>TIGR03156 GTP_HflX GTP-binding protein HflX. This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like).
Probab=26.28 E-value=57 Score=32.22 Aligned_cols=104 Identities=23% Similarity=0.252 Sum_probs=66.8
Q ss_pred CCcchhhHHhhhhhhhh---h------hhhhHhhhhhHHHhhhh-----hHHHHHHHHHHHHHHHHHHHHHhhhhh---h
Q 018386 126 GEPKSIEVSAFLDERAF---L------WNQYKVMENDLTSKINS-----KRAEVDRANERIEKLLASTEQLQLSNN---E 188 (357)
Q Consensus 126 ~SeKdkEVsALlaEKdF---V------WNQ~k~ME~Dyt~lLK~-----K~~EvaQAtE~iqKL~q~~EeLQ~~nq---e 188 (357)
++-|=.||..+..+.+. | =.|.+.||..+-..+=. -++=+.+|..+-.|||..+.+|+=.-- .
T Consensus 51 g~gk~~e~~~~~~~~~~~~vi~~~~l~p~q~~nl~~~~~~~v~Dr~~lil~iF~~ra~t~e~klqv~la~l~~~l~r~~~ 130 (351)
T TIGR03156 51 GKGKVEEIAELVEELEADLVIFDHELSPSQERNLEKALGCRVIDRTGLILDIFAQRARTHEGKLQVELAQLKYLLPRLVG 130 (351)
T ss_pred cccHHHHHHHHHHhcCCCEEEECCCCCHHHHHHHHHHhCCcccchHHHHHHHHHHhccChHHHHHHHHHhccchhhhhhh
Confidence 35677777777665442 2 46888898865322211 135678899999999999999962111 1
Q ss_pred hhhHHHHHHHHHH-------hhhhcccchhhHHHHHHHHHHHHHhhcC
Q 018386 189 KDETIAKLKTQIA-------QMETGSKKWNTEISRLTQELELLRKSRT 229 (357)
Q Consensus 189 KDdeI~RLqak~a-------eMe~~~Kkk~eeIs~L~~eLe~lrk~r~ 229 (357)
....++|+.+-+- +++.+......+|..|..+|+.+++.|.
T Consensus 131 ~~~~l~~~~~~i~~~g~gE~~~~~~~~~i~~ri~~l~~~L~~~~~~~~ 178 (351)
T TIGR03156 131 GWTHLSRQGGGIGTRGPGETQLETDRRLIRERIAQLKKELEKVEKQRE 178 (351)
T ss_pred hHHHHHhhcCCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1122555543211 2345556678899999999999988865
No 319
>PF08700 Vps51: Vps51/Vps67; InterPro: IPR014812 The VFT tethering complex (also known as GARP complex, Golgi associated retrograde protein complex, Vps53 tethering complex) is a conserved eukaryotic docking complex which is involved in recycling of proteins from endosomes to the late Golgi. Vps51 (also known as Vps67) is a subunit of VFT and interacts with the SNARE Tlg1 [].
Probab=26.27 E-value=2e+02 Score=22.12 Aligned_cols=43 Identities=21% Similarity=0.240 Sum_probs=20.1
Q ss_pred HhhhhhhhhhHHHHHHHHHHhhhhcccchhhHHHHHHHHHHHH
Q 018386 182 LQLSNNEKDETIAKLKTQIAQMETGSKKWNTEISRLTQELELL 224 (357)
Q Consensus 182 LQ~~nqeKDdeI~RLqak~aeMe~~~Kkk~eeIs~L~~eLe~l 224 (357)
||....+.=.++...-.++..|+.........++.|...++.+
T Consensus 42 Lr~~V~~nY~~fI~as~~I~~m~~~~~~l~~~l~~l~~~~~~l 84 (87)
T PF08700_consen 42 LRKLVYENYRDFIEASDEISSMENDLSELRNLLSELQQSIQSL 84 (87)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3333333333333334445555555555555555555555544
No 320
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=26.21 E-value=7.1e+02 Score=27.68 Aligned_cols=9 Identities=22% Similarity=0.390 Sum_probs=5.3
Q ss_pred HHHHHHHHH
Q 018386 20 LVKMLKSQQ 28 (357)
Q Consensus 20 LVkMLr~~q 28 (357)
-+++|+..|
T Consensus 544 a~~vlreeY 552 (717)
T PF10168_consen 544 ATKVLREEY 552 (717)
T ss_pred HHHHHHHHH
Confidence 456666554
No 321
>PF06103 DUF948: Bacterial protein of unknown function (DUF948); InterPro: IPR009293 This family consists of bacterial sequences several of which are thought to be general stress proteins.
Probab=26.01 E-value=2.9e+02 Score=21.75 Aligned_cols=53 Identities=25% Similarity=0.366 Sum_probs=35.3
Q ss_pred hHHHhhhhhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHhhhh
Q 018386 153 DLTSKINSKRAEVDRANERIEKLLASTEQLQLSNNEKDETIAKLKTQIAQMET 205 (357)
Q Consensus 153 Dyt~lLK~K~~EvaQAtE~iqKL~q~~EeLQ~~nqeKDdeI~RLqak~aeMe~ 205 (357)
+....++.-+.++..-...+..+..+.+++..-.++|-+.++.+=..+.+.+.
T Consensus 30 ~~~~ti~~l~~~~~~i~~e~~~ll~~~n~l~~dv~~k~~~v~~~~~~v~~~g~ 82 (90)
T PF06103_consen 30 EVNKTIDTLQEQVDPITKEINDLLHNTNELLEDVNEKLEKVDPVFEAVADLGE 82 (90)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 34455666666677777777777777777777777777777777666654443
No 322
>PF14772 NYD-SP28: Sperm tail
Probab=25.91 E-value=3.5e+02 Score=22.09 Aligned_cols=34 Identities=21% Similarity=0.418 Sum_probs=29.5
Q ss_pred HHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018386 13 RQKRDKI--------LVKMLKSQQEQIETLVKEREILEDHLK 46 (357)
Q Consensus 13 r~~W~ri--------LVkMLr~~q~QvEsL~~ER~~LEa~ik 46 (357)
-..|+.| |..+|..+...-+.++..-+.|+..+.
T Consensus 41 ~~~W~~i~~~~~~~eL~~~ie~q~~~~e~ii~~Kd~lI~~L~ 82 (104)
T PF14772_consen 41 NERWREILRKKKPQELRKEIEEQKQACERIIDRKDALIKELQ 82 (104)
T ss_pred HHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4679998 889999999999999999998888773
No 323
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=25.73 E-value=3.3e+02 Score=30.20 Aligned_cols=17 Identities=12% Similarity=0.233 Sum_probs=8.3
Q ss_pred hhhhhhhhHHHHHHHHH
Q 018386 184 LSNNEKDETIAKLKTQI 200 (357)
Q Consensus 184 ~~nqeKDdeI~RLqak~ 200 (357)
...++|+..+.+++.++
T Consensus 559 ~l~~~~~~~~~~~~~~a 575 (782)
T PRK00409 559 KLQEEEDKLLEEAEKEA 575 (782)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33444555555554443
No 324
>PRK14143 heat shock protein GrpE; Provisional
Probab=25.50 E-value=88 Score=30.15 Aligned_cols=27 Identities=15% Similarity=0.193 Sum_probs=13.8
Q ss_pred HHHHHHHHhhhhhhhhhHHHHHHHHHH
Q 018386 175 LLASTEQLQLSNNEKDETIAKLKTQIA 201 (357)
Q Consensus 175 L~q~~EeLQ~~nqeKDdeI~RLqak~a 201 (357)
|.+.++.|+....+..+...|++|+..
T Consensus 72 l~~el~~l~~e~~elkd~~lR~~Adfe 98 (238)
T PRK14143 72 LEQELESLKQELEELNSQYMRIAADFD 98 (238)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444333344466677777663
No 325
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=25.34 E-value=3.5e+02 Score=22.67 Aligned_cols=62 Identities=21% Similarity=0.306 Sum_probs=34.6
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhH-------HHHHHHHHHhhhhcccchhhHHHHHHHH
Q 018386 159 NSKRAEVDRANERIEKLLASTEQLQLSNNEKDET-------IAKLKTQIAQMETGSKKWNTEISRLTQE 220 (357)
Q Consensus 159 K~K~~EvaQAtE~iqKL~q~~EeLQ~~nqeKDde-------I~RLqak~aeMe~~~Kkk~eeIs~L~~e 220 (357)
.+-++-|.||.+-|+=||-.+|+|..-|+-=..+ +.-|+.+-..+...--.|.++|--|-+.
T Consensus 7 ekLE~KiqqAvdTI~LLQmEieELKEknn~l~~e~q~~q~~reaL~~eneqlk~e~~~WQerlrsLLGk 75 (79)
T COG3074 7 EKLEAKVQQAIDTITLLQMEIEELKEKNNSLSQEVQNAQHQREALERENEQLKEEQNGWQERLRALLGK 75 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3445678889999988888888886444422222 2233333333333344566655555443
No 326
>PHA03332 membrane glycoprotein; Provisional
Probab=25.14 E-value=2.8e+02 Score=32.91 Aligned_cols=57 Identities=19% Similarity=0.263 Sum_probs=41.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHhhhhcccchhhHHHHHHHHHH
Q 018386 163 AEVDRANERIEKLLASTEQLQLSNNEKDETIAKLKTQIAQMETGSKKWNTEISRLTQELE 222 (357)
Q Consensus 163 ~EvaQAtE~iqKL~q~~EeLQ~~nqeKDdeI~RLqak~aeMe~~~Kkk~eeIs~L~~eLe 222 (357)
+.++...++|+.+.+-+..++.+.-+=.|.|.+|-++| ....++-+.+|+.|++++.
T Consensus 891 aaia~mksaIg~tNaAV~~lsDai~klGnti~kisatl---~~nI~avNgRIs~Led~VN 947 (1328)
T PHA03332 891 AATAEMASKIGGLNARVDKTSDVITKLGDTIAKISATL---DNNIRAVNGRVSDLEDQVN 947 (1328)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH---HhhHHHhcccHHHHHHHHH
Confidence 34445677777777788888877777888888876654 4566677778888887764
No 327
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=25.13 E-value=3e+02 Score=21.86 Aligned_cols=53 Identities=23% Similarity=0.206 Sum_probs=24.6
Q ss_pred HHHHHHHHHhhhhhhhhhHHHHHHHHHHhhhhcccchhhHHHHHHHHHHHHHh
Q 018386 174 KLLASTEQLQLSNNEKDETIAKLKTQIAQMETGSKKWNTEISRLTQELELLRK 226 (357)
Q Consensus 174 KL~q~~EeLQ~~nqeKDdeI~RLqak~aeMe~~~Kkk~eeIs~L~~eLe~lrk 226 (357)
-|+.-+..+..-+..-+.++..|..+=.....-.-.+=.+|.+|..|++.+++
T Consensus 9 ~Lr~rLd~~~rk~~~~~~~~k~L~~ERd~~~~~l~~a~~e~~~Lk~E~e~L~~ 61 (69)
T PF14197_consen 9 TLRNRLDSLTRKNSVHEIENKRLRRERDSAERQLGDAYEENNKLKEENEALRK 61 (69)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444444322223333455555556666555554
No 328
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=25.11 E-value=1.3e+02 Score=23.52 Aligned_cols=31 Identities=19% Similarity=0.267 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHhhhhhhhhhHHHHHHHHHH
Q 018386 171 RIEKLLASTEQLQLSNNEKDETIAKLKTQIA 201 (357)
Q Consensus 171 ~iqKL~q~~EeLQ~~nqeKDdeI~RLqak~a 201 (357)
+++=+...+++|..+.-.=..+|.+|+..+.
T Consensus 12 ~la~qe~~ie~Ln~~v~~Qq~~I~~L~~~l~ 42 (69)
T PF04102_consen 12 KLAFQEDTIEELNDVVTEQQRQIDRLQRQLR 42 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444445555665444444566666666654
No 329
>cd07674 F-BAR_FCHO1 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of FCH domain Only 1 protein. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. FCH domain Only 1 (FCHO1) may be involved in clathrin-coated vesicle formation. It contains an N-terminal F-BAR domain and a C-terminal domain of unknown function named SAFF which is also present in FCHO2 and endophilin interacting protein 1. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=24.97 E-value=5.9e+02 Score=24.05 Aligned_cols=25 Identities=8% Similarity=0.070 Sum_probs=19.2
Q ss_pred hhhhhhhhhhhhHhhhhhHHHhhhh
Q 018386 136 FLDERAFLWNQYKVMENDLTSKINS 160 (357)
Q Consensus 136 LlaEKdFVWNQ~k~ME~Dyt~lLK~ 160 (357)
+-.+=-+|+++|..||.+-..-||.
T Consensus 180 ~~~~m~~~~~~~Q~~Ee~Ri~~lk~ 204 (261)
T cd07674 180 FEQKMLESAQKFQDIEETHLRHMKL 204 (261)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3345567899999999988887776
No 330
>PHA03188 UL14 tegument protein; Provisional
Probab=24.76 E-value=3.3e+02 Score=26.24 Aligned_cols=75 Identities=21% Similarity=0.216 Sum_probs=50.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhHHHHHHhHHhHHHHHHHHHHHHHhhhhhhhchh------hHHHHH
Q 018386 24 LKSQQEQIETLVKEREILEDHLKMQHEKWVSDVRLYEDHISQMKSEIVAQELIHLLDAAKSDMVVGLK------LREASL 97 (357)
Q Consensus 24 Lr~~q~QvEsL~~ER~~LEa~ik~QhE~W~sdv~~lqdrLsqm~~el~~eE~~~~~EaAk~~l~LGlK------~RE~~l 97 (357)
.+.-+.-||+.++-|++|.....+++-..+++...-+|.|-.-... +-+++..+.-+|.. .-|+=|
T Consensus 78 ~r~Iq~rVeeQ~a~r~iL~~nRRfL~PdFid~lD~~ED~l~d~Ed~--------L~da~~~~~~~d~~~~wl~e~dEALL 149 (199)
T PHA03188 78 IADIQEKVEEQTSIQKILNANRRYIAPDFIEGLDKIEDDNCDGIDK--------LEDAVGGDIEHDHHEGWFCEDDEALL 149 (199)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhcChHHHHHHHHHHHHHHhhHHH--------HHhhhcCCCCCCcccccccchhHHHH
Confidence 3455788999999999999999999998888887777777653321 22333333333321 245666
Q ss_pred HHHHhhhch
Q 018386 98 LKLMLEYTD 106 (357)
Q Consensus 98 ~k~~lE~te 106 (357)
.+|+|+.+.
T Consensus 150 t~WmL~~aP 158 (199)
T PHA03188 150 TQWMLTTHP 158 (199)
T ss_pred HHHHHhcCC
Confidence 777776655
No 331
>TIGR02977 phageshock_pspA phage shock protein A. Members of this family are the phage shock protein PspA, from the phage shock operon. This is a narrower family than the set of PspA and its homologs, sometimes several in a genome, as described by PFAM model pfam04012. PspA appears to maintain the protonmotive force under stress conditions that include overexpression of certain phage secretins, heat shock, ethanol, and protein export defects.
Probab=24.65 E-value=5.6e+02 Score=23.64 Aligned_cols=40 Identities=23% Similarity=0.331 Sum_probs=30.9
Q ss_pred hhHHHHHHHHHHhhhhcccchhhHHHHHHHHHHHHHhhcC
Q 018386 190 DETIAKLKTQIAQMETGSKKWNTEISRLTQELELLRKSRT 229 (357)
Q Consensus 190 DdeI~RLqak~aeMe~~~Kkk~eeIs~L~~eLe~lrk~r~ 229 (357)
...+.+|+..+..+...+.+.+..|..|+.+++.++.-+.
T Consensus 98 ~~~~~~l~~~~~~~~~~v~~l~~~l~~L~~ki~~~k~k~~ 137 (219)
T TIGR02977 98 QELAEALERELAAVEETLAKLQEDIAKLQAKLAEARARQK 137 (219)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556667777777777777888888899999888877665
No 332
>PRK10698 phage shock protein PspA; Provisional
Probab=24.52 E-value=5.2e+02 Score=24.30 Aligned_cols=40 Identities=20% Similarity=0.332 Sum_probs=24.2
Q ss_pred hhHHHHHHHHHHhhhhcccchhhHHHHHHHHHHHHHhhcC
Q 018386 190 DETIAKLKTQIAQMETGSKKWNTEISRLTQELELLRKSRT 229 (357)
Q Consensus 190 DdeI~RLqak~aeMe~~~Kkk~eeIs~L~~eLe~lrk~r~ 229 (357)
...|..|+.++......+.+....+.+|+..|+.+|.-+.
T Consensus 98 ~~~~~~l~~~~~~~~~~~~~L~~~l~~L~~ki~eak~k~~ 137 (222)
T PRK10698 98 TDLIATLEHEVTLVDETLARMKKEIGELENKLSETRARQQ 137 (222)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555566666665555566666666666666666665543
No 333
>smart00307 ILWEQ I/LWEQ domain. Thought to possess an F-actin binding function.
Probab=23.98 E-value=2.2e+02 Score=27.06 Aligned_cols=26 Identities=38% Similarity=0.523 Sum_probs=20.6
Q ss_pred HHHHHhhhhcccchhhHHHHHHHHHHHHHhh
Q 018386 197 KTQIAQMETGSKKWNTEISRLTQELELLRKS 227 (357)
Q Consensus 197 qak~aeMe~~~Kkk~eeIs~L~~eLe~lrk~ 227 (357)
+.+..|||. .-+|.+|+.+|+..|+.
T Consensus 163 ~~k~~emE~-----Qv~IL~lE~~L~~ar~~ 188 (200)
T smart00307 163 EGKTQEMEQ-----QVEILKLENELEAARKK 188 (200)
T ss_pred HHHHHHHHH-----HHHHHHHHHHHHHHHHH
Confidence 667888876 56799999999988763
No 334
>PRK14148 heat shock protein GrpE; Provisional
Probab=23.80 E-value=1e+02 Score=28.94 Aligned_cols=10 Identities=10% Similarity=0.338 Sum_probs=5.1
Q ss_pred hHHHHHHHHH
Q 018386 191 ETIAKLKTQI 200 (357)
Q Consensus 191 deI~RLqak~ 200 (357)
+...|++|+.
T Consensus 61 d~~lR~~Ae~ 70 (195)
T PRK14148 61 DEALRAKAEM 70 (195)
T ss_pred HHHHHHHHHH
Confidence 4445555554
No 335
>KOG0993 consensus Rab5 GTPase effector Rabaptin-5 [Intracellular trafficking, secretion, and vesicular transport]
Probab=23.63 E-value=3.7e+02 Score=28.95 Aligned_cols=32 Identities=34% Similarity=0.499 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHH
Q 018386 163 AEVDRANERIEKLLASTEQLQLSNNEKDETIAKLKTQIA 201 (357)
Q Consensus 163 ~EvaQAtE~iqKL~q~~EeLQ~~nqeKDdeI~RLqak~a 201 (357)
.|.+.|.|...||..-+--+ ..+|..|+++++
T Consensus 141 nem~ka~Ed~eKlrelv~pm-------ekeI~elk~kl~ 172 (542)
T KOG0993|consen 141 NEMDKAKEDEEKLRELVTPM-------EKEINELKKKLA 172 (542)
T ss_pred HHHHHHHhhHHHHHHHHhhH-------HHHHHHHHHHHH
Confidence 34555666666655433222 345666666665
No 336
>PF06120 Phage_HK97_TLTM: Tail length tape measure protein; InterPro: IPR009302 This entry consists of the tail length tape measure protein from Bacteriophage HK97 and related sequences from Escherichia coli (strain K12).
Probab=23.63 E-value=2.6e+02 Score=28.06 Aligned_cols=61 Identities=18% Similarity=0.302 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHH-----hhhhhhhhhHHHHHHHHHHhhhhcccchhhHHHHHHHHHHHH
Q 018386 164 EVDRANERIEKLLASTEQL-----QLSNNEKDETIAKLKTQIAQMETGSKKWNTEISRLTQELELL 224 (357)
Q Consensus 164 EvaQAtE~iqKL~q~~EeL-----Q~~nqeKDdeI~RLqak~aeMe~~~Kkk~eeIs~L~~eLe~l 224 (357)
.++||.+.+-..=.+++++ .+++-.-.+.|.++...+.+......+.+.+|..|+++++..
T Consensus 42 ~~EQAr~~A~~fA~~ld~~~~kl~~Ms~~ql~~~~~k~~~si~~q~~~i~~l~~~i~~l~~~i~~y 107 (301)
T PF06120_consen 42 NAEQARQEAIEFADSLDELKEKLKEMSSTQLRANIAKAEESIAAQKRAIEDLQKKIDSLKDQIKNY 107 (301)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 337
>TIGR01730 RND_mfp RND family efflux transporter, MFP subunit. This model represents the MFP (membrane fusion protein) component of the RND family of transporters. RND refers to Resistance, Nodulation, and cell Division. It is, in part, a subfamily of pfam00529 (Pfam release 7.5) but hits substantial numbers of proteins missed by that model. The related HlyD secretion protein, for which pfam00529 is named, is outside the scope of this model. Attributed functions imply outward transport. These functions include nodulation, acriflavin resistance, heavy metal efflux, and multidrug resistance proteins. Most members of this family are found in Gram-negative bacteria. The proposed function of MFP proteins is to bring the inner and outer membranes together and enable transport to the outside of the outer membrane. Note, however, that a few members of this family are found in Gram-positive bacteria, where there is no outer membrane.
Probab=23.43 E-value=5.7e+02 Score=23.33 Aligned_cols=31 Identities=6% Similarity=0.130 Sum_probs=17.0
Q ss_pred hhHHHHHHHHHHhhhhcccchhhHHHHHHHHHHHHHhh
Q 018386 190 DETIAKLKTQIAQMETGSKKWNTEISRLTQELELLRKS 227 (357)
Q Consensus 190 DdeI~RLqak~aeMe~~~Kkk~eeIs~L~~eLe~lrk~ 227 (357)
..++..++.++.. +..++..+..+|+.++..
T Consensus 101 ~~~~~~~~~~~~~-------~~~~l~~~~~~l~~~~~~ 131 (322)
T TIGR01730 101 QADLDDAKAAVEA-------AQADLEAAKASLASAQLN 131 (322)
T ss_pred HHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHh
Confidence 4456666666653 344555556666666543
No 338
>KOG4552 consensus Vitamin-D-receptor interacting protein complex component [Transcription]
Probab=23.28 E-value=2.4e+02 Score=27.88 Aligned_cols=54 Identities=19% Similarity=0.229 Sum_probs=38.6
Q ss_pred hhHHHhhhhhHHHHHHHH---HHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHhhhh
Q 018386 152 NDLTSKINSKRAEVDRAN---ERIEKLLASTEQLQLSNNEKDETIAKLKTQIAQMET 205 (357)
Q Consensus 152 ~Dyt~lLK~K~~EvaQAt---E~iqKL~q~~EeLQ~~nqeKDdeI~RLqak~aeMe~ 205 (357)
.+.-.+|-.|+.|...-- +.-+|.-+-+..|...+.+.|..|..||..+.+-|.
T Consensus 46 v~il~Ll~~kd~ef~~llkla~eq~k~e~~m~~Lea~VEkrD~~IQqLqk~LK~aE~ 102 (272)
T KOG4552|consen 46 VNILKLLDSKDDEFKTLLKLAPEQQKREQLMRTLEAHVEKRDEVIQQLQKNLKSAEV 102 (272)
T ss_pred HHHHHHHHhccHHHHHHHHHhHhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 356667777777654322 334667777888888899999999999988865443
No 339
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....
Probab=23.28 E-value=3.2e+02 Score=20.41 Aligned_cols=12 Identities=33% Similarity=0.479 Sum_probs=5.2
Q ss_pred chhhHHHHHHHH
Q 018386 209 KWNTEISRLTQE 220 (357)
Q Consensus 209 kk~eeIs~L~~e 220 (357)
....++..|..+
T Consensus 51 ~L~~~~~~L~~e 62 (64)
T PF00170_consen 51 QLKKEIQSLKSE 62 (64)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhh
Confidence 334444444443
No 340
>PTZ00419 valyl-tRNA synthetase-like protein; Provisional
Probab=23.28 E-value=3e+02 Score=31.13 Aligned_cols=58 Identities=22% Similarity=0.283 Sum_probs=40.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhhhhhh-------hhHHHHHHHHHHhhhhcccchhhHHHHHHHHHHHHH
Q 018386 161 KRAEVDRANERIEKLLASTEQLQLSNNEK-------DETIAKLKTQIAQMETGSKKWNTEISRLTQELELLR 225 (357)
Q Consensus 161 K~~EvaQAtE~iqKL~q~~EeLQ~~nqeK-------DdeI~RLqak~aeMe~~~Kkk~eeIs~L~~eLe~lr 225 (357)
.++|+++.+..+++|++.++.++.--.+. .+.|.+-+.+++ +..++|..|...|+.|+
T Consensus 927 ~~~E~~rL~K~l~kl~~ei~~~~~kL~N~~F~~kAp~~vve~e~~kl~-------~~~~~l~~l~~~l~~l~ 991 (995)
T PTZ00419 927 LKKELAKLEKKLAKLQKSLESYLKKISIPNYEDKVPEDVRKLNDEKID-------ELNEEIKQLEQAIEELK 991 (995)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCchhhhcCCHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHH
Confidence 67888888999999999998886332222 266666677777 44556666666666665
No 341
>PRK14145 heat shock protein GrpE; Provisional
Probab=23.08 E-value=1.1e+02 Score=28.77 Aligned_cols=28 Identities=21% Similarity=0.281 Sum_probs=13.4
Q ss_pred HHHHHHHHHHhhhhhhhhhHHHHHHHHH
Q 018386 173 EKLLASTEQLQLSNNEKDETIAKLKTQI 200 (357)
Q Consensus 173 qKL~q~~EeLQ~~nqeKDdeI~RLqak~ 200 (357)
..|.+.++.|+....+-.+...|++|+.
T Consensus 48 ~~l~~~l~~le~e~~el~d~~lR~~AEf 75 (196)
T PRK14145 48 EELKQKLQQKEVEAQEYLDIAQRLKAEF 75 (196)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444445555555554
No 342
>PRK00295 hypothetical protein; Provisional
Probab=23.03 E-value=1.4e+02 Score=23.46 Aligned_cols=28 Identities=29% Similarity=0.420 Sum_probs=14.1
Q ss_pred hhHHHHHHHHHHhhhhcccchhhHHHHHHHHHHHH
Q 018386 190 DETIAKLKTQIAQMETGSKKWNTEISRLTQELELL 224 (357)
Q Consensus 190 DdeI~RLqak~aeMe~~~Kkk~eeIs~L~~eLe~l 224 (357)
++.|..|..-++ +-..+|..|.+.|..|
T Consensus 18 E~tie~Ln~~v~-------~Qq~~I~~L~~ql~~L 45 (68)
T PRK00295 18 DDTIQALNDVLV-------EQQRVIERLQLQMAAL 45 (68)
T ss_pred HHHHHHHHHHHH-------HHHHHHHHHHHHHHHH
Confidence 455555555555 3334455555555554
No 343
>TIGR00513 accA acetyl-CoA carboxylase, carboxyl transferase, alpha subunit. The enzyme acetyl-CoA carboxylase contains a biotin carboxyl carrier protein or domain, a biotin carboxylase, and a carboxyl transferase. This model represents the alpha chain of the carboxyl transferase for cases in which the architecture of the protein is as in E. coli, in which the carboxyltransferase portion consists of two non-identical subnits, alpha and beta.
Probab=22.89 E-value=1.2e+02 Score=30.45 Aligned_cols=25 Identities=32% Similarity=0.478 Sum_probs=14.3
Q ss_pred ccccccccc---cccccccccccCcccc
Q 018386 314 SEKGTRSSK---RKAVDVIPILDTPKLF 338 (357)
Q Consensus 314 ~~k~~r~~k---~k~~~~~~~~e~pklf 338 (357)
..|-.|-.+ +-.+++|.+.+||=-|
T Consensus 137 ~rKa~R~m~lA~~f~iPvVtlvDTpGa~ 164 (316)
T TIGR00513 137 YRKALRLMKMAERFKMPIITFIDTPGAY 164 (316)
T ss_pred HHHHHHHHHHHHHcCCCEEEEEECCCCC
Confidence 344444443 3356777777887644
No 344
>PHA03190 UL14 tegument protein; Provisional
Probab=22.79 E-value=5.2e+02 Score=24.95 Aligned_cols=42 Identities=10% Similarity=0.060 Sum_probs=32.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhHHHHHHh
Q 018386 24 LKSQQEQIETLVKEREILEDHLKMQHEKWVSDVRLYEDHISQ 65 (357)
Q Consensus 24 Lr~~q~QvEsL~~ER~~LEa~ik~QhE~W~sdv~~lqdrLsq 65 (357)
.+.-+.-||+.++-|.+|.....+++-..+++...-+|.|-.
T Consensus 74 ~~~Iq~rVE~Q~a~r~~L~~nRRyL~PdF~d~ld~~eD~l~d 115 (196)
T PHA03190 74 IARIKAATEGQRALALELDGYRRYLRNDFLDTFAAEADAIAD 115 (196)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHhhcChHHHHHHHHHHHHHHH
Confidence 345578899999999999999999998776666655555544
No 345
>PRK10093 primosomal replication protein N''; Provisional
Probab=22.78 E-value=3.2e+02 Score=25.53 Aligned_cols=55 Identities=9% Similarity=0.271 Sum_probs=34.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHhhhhhhhhhhhhHHHHHHhHHhHH
Q 018386 12 ERQKRDKILVKMLKSQQEQIETLVK--EREILEDHLKMQHEKWVSDVRLYEDHISQMKSEI 70 (357)
Q Consensus 12 ~r~~W~riLVkMLr~~q~QvEsL~~--ER~~LEa~ik~QhE~W~sdv~~lqdrLsqm~~el 70 (357)
.+++|.|=|+.|++.++-++..--. +-..|.-+|.-.+. |...|+.-|..+++.|
T Consensus 110 qHQd~ERRL~~Mv~dre~~L~~a~~~~~qq~lq~el~aleg----RL~RCrqAl~~IE~~I 166 (171)
T PRK10093 110 QHQEFERRLLEMVAERRARLARATDLVEQQTLHREVEAYEG----RLARCRHALEKIENVL 166 (171)
T ss_pred HhHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHH
Confidence 7889999999999998888774332 33444444444444 4555555555555443
No 346
>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]
Probab=22.77 E-value=1.4e+03 Score=27.44 Aligned_cols=26 Identities=12% Similarity=0.096 Sum_probs=13.6
Q ss_pred HHhhhchhHHHHHHHHHHHHhcCCCC
Q 018386 100 LMLEYTDDQLADFMAWFDLLRQKPKD 125 (357)
Q Consensus 100 ~~lE~teDeL~DFka~~~~L~~~lke 125 (357)
.-++....+..+.++.+..|..+++.
T Consensus 310 k~i~~~kk~~~~~~~~ie~~ek~l~a 335 (1141)
T KOG0018|consen 310 KDIETAKKDYRALKETIERLEKELKA 335 (1141)
T ss_pred hhHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 34444555555555555555555444
No 347
>cd07665 BAR_SNX1 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 1. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. SNX1 is a component of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi. The retromer consists of a cargo-recognition subcomplex and a subcomplex formed by a dimer of sorting nexins (SNX1 and/or SNX2), which ensures effcient cargo sorting by facilitating proper membrane localization
Probab=22.74 E-value=6.9e+02 Score=24.02 Aligned_cols=23 Identities=22% Similarity=0.436 Sum_probs=16.0
Q ss_pred HHhhhhhhhhhhhhhHhhhhhHH
Q 018386 133 VSAFLDERAFLWNQYKVMENDLT 155 (357)
Q Consensus 133 VsALlaEKdFVWNQ~k~ME~Dyt 155 (357)
|.+.+.+|-=+|.+|...++++.
T Consensus 121 VK~~f~~R~k~~~~~~~~~~~l~ 143 (234)
T cd07665 121 VRGAFDQRMKTWQRWQDAQAMLQ 143 (234)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556667777888888877765
No 348
>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional
Probab=22.73 E-value=9.3e+02 Score=26.18 Aligned_cols=79 Identities=8% Similarity=0.087 Sum_probs=42.6
Q ss_pred hhHHHhhhhhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHhhhhcccchhhHHHHHHHHHHHHHhhcCCC
Q 018386 152 NDLTSKINSKRAEVDRANERIEKLLASTEQLQLSNNEKDETIAKLKTQIAQMETGSKKWNTEISRLTQELELLRKSRTAS 231 (357)
Q Consensus 152 ~Dyt~lLK~K~~EvaQAtE~iqKL~q~~EeLQ~~nqeKDdeI~RLqak~aeMe~~~Kkk~eeIs~L~~eLe~lrk~r~a~ 231 (357)
.+....+...+-++......++.|.+.+++++.. -..+...+.++.+++-+.+-..+--..|-...+.++=+....
T Consensus 328 ~~l~~~~~~~hP~v~~l~~~~~~L~~~~~~l~~~----~~~~p~~e~~~~~L~R~~~~~~~lY~~lL~r~~e~~i~~a~~ 403 (726)
T PRK09841 328 AEISQLYKKDHPTYRALLEKRQTLEQERKRLNKR----VSAMPSTQQEVLRLSRDVEAGRAVYLQLLNRQQELSISKSSA 403 (726)
T ss_pred HHHHHHhcccCchHHHHHHHHHHHHHHHHHHHHH----HHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 3334445555555656666666666655555321 122333444555555555556666666666677766665544
Q ss_pred Ccc
Q 018386 232 DTP 234 (357)
Q Consensus 232 ~tp 234 (357)
+++
T Consensus 404 ~~~ 406 (726)
T PRK09841 404 IGN 406 (726)
T ss_pred CCc
Confidence 433
No 349
>PF13747 DUF4164: Domain of unknown function (DUF4164)
Probab=22.68 E-value=4.2e+02 Score=21.84 Aligned_cols=26 Identities=12% Similarity=0.328 Sum_probs=12.1
Q ss_pred HHHHHHHHHhhhhcccchhhHHHHHH
Q 018386 193 IAKLKTQIAQMETGSKKWNTEISRLT 218 (357)
Q Consensus 193 I~RLqak~aeMe~~~Kkk~eeIs~L~ 218 (357)
.+.++.+++.|..+.....+++-...
T Consensus 34 ~~~~e~ei~~l~~dr~rLa~eLD~~~ 59 (89)
T PF13747_consen 34 RDELEEEIQRLDADRSRLAQELDQAE 59 (89)
T ss_pred hhhHHHHHHHHHhhHHHHHHHHHhHH
Confidence 35555555555444444444443333
No 350
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=22.65 E-value=5.1e+02 Score=27.84 Aligned_cols=43 Identities=26% Similarity=0.322 Sum_probs=23.7
Q ss_pred hhhhhhHHHHHHHHHHhhhhcccchhhHHHHHHHHHHHHHhh--cCCCCccc
Q 018386 186 NNEKDETIAKLKTQIAQMETGSKKWNTEISRLTQELELLRKS--RTASDTPV 235 (357)
Q Consensus 186 nqeKDdeI~RLqak~aeMe~~~Kkk~eeIs~L~~eLe~lrk~--r~a~~tpv 235 (357)
.++-..++..|+.+.+ .....|..|.+.|+.+-.. .+..+.|+
T Consensus 111 ~~~~~~~~~ql~~~~~-------~~~~~l~~l~~~l~~~~~~~~~~~~d~P~ 155 (472)
T TIGR03752 111 TQELTKEIEQLKSERQ-------QLQGLIDQLQRRLAGVLTGPSGGGSDLPV 155 (472)
T ss_pred hHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHhhccccCCCCCCCCCc
Confidence 3344445555555554 3445566677777665443 44556664
No 351
>TIGR03321 alt_F1F0_F0_B alternate F1F0 ATPase, F0 subunit B. CC and in principle may run in either direction. This model represents the F0 subunit B of this apparent second ATP synthase.
Probab=22.57 E-value=6.4e+02 Score=23.61 Aligned_cols=60 Identities=17% Similarity=0.218 Sum_probs=35.8
Q ss_pred hhhhhhhhHhhhhhHHHhhhhhHHHHHHHHHHHHHHHHHHHH-HhhhhhhhhhHHHHHHHH
Q 018386 140 RAFLWNQYKVMENDLTSKINSKRAEVDRANERIEKLLASTEQ-LQLSNNEKDETIAKLKTQ 199 (357)
Q Consensus 140 KdFVWNQ~k~ME~Dyt~lLK~K~~EvaQAtE~iqKL~q~~Ee-LQ~~nqeKDdeI~RLqak 199 (357)
+.|+|.-+.-|=..-...+...-.+++++.+.++.++...++ |+.+.++..+.+..-+.+
T Consensus 23 ~kfl~kPi~~~l~~R~~~I~~~l~~Ae~~~~eA~~~~~e~e~~l~~a~~ea~~i~~~A~~e 83 (246)
T TIGR03321 23 KRFLYRPILDAMDAREKKIAGELADADTKKREAEQERREYEEKNEELDQQREVLLTKAKEE 83 (246)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 568888776555555557777777777777766666655544 444444444444444333
No 352
>PF06476 DUF1090: Protein of unknown function (DUF1090); InterPro: IPR009468 This family consists of several bacterial proteins of unknown function and is known as YqjC in Escherichia coli.
Probab=22.48 E-value=2.6e+02 Score=24.13 Aligned_cols=44 Identities=14% Similarity=0.274 Sum_probs=32.7
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHh
Q 018386 157 KINSKRAEVDRANERIEKLLASTEQLQLSNNEKDETIAKLKTQIAQ 202 (357)
Q Consensus 157 lLK~K~~EvaQAtE~iqKL~q~~EeLQ~~nqeKDdeI~RLqak~ae 202 (357)
+++.-..+|+..+.++..-+..+.+.+..++ .++|.+-+.|++|
T Consensus 64 l~~e~q~ki~~~~~kV~ere~eL~eA~~~G~--~~KI~K~~~KL~e 107 (115)
T PF06476_consen 64 LKAERQQKIAEKQQKVAEREAELKEAQAKGD--SDKIAKRQKKLAE 107 (115)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHhCC--HHHHHHHHHHHHH
Confidence 4555566777777777777777777776555 5899999999873
No 353
>PF13874 Nup54: Nucleoporin complex subunit 54; PDB: 3T97_B.
Probab=22.40 E-value=5e+02 Score=22.56 Aligned_cols=81 Identities=19% Similarity=0.352 Sum_probs=37.1
Q ss_pred hHHHhhhhhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHhhhhcccchhhHHHHHHHHHHHHHhhcCCCC
Q 018386 153 DLTSKINSKRAEVDRANERIEKLLASTEQLQLSNNEKDETIAKLKTQIAQMETGSKKWNTEISRLTQELELLRKSRTASD 232 (357)
Q Consensus 153 Dyt~lLK~K~~EvaQAtE~iqKL~q~~EeLQ~~nqeKDdeI~RLqak~aeMe~~~Kkk~eeIs~L~~eLe~lrk~r~a~~ 232 (357)
|....++--+.++++.++.+..+...+..||.-.-.=-..|.+++.+-. ..--++-++-..+|-+|... -++
T Consensus 34 dL~~R~~~Q~~~~~~~~~~l~~i~~~l~~L~~~~~~~~~rl~~~r~r~~-------~L~hR~l~v~~~~eilr~~g-~~l 105 (141)
T PF13874_consen 34 DLKKRVEAQEEEIAQHRERLKEINDKLEELQKHDLETSARLEEARRRHQ-------ELSHRLLRVLRKQEILRNRG-YAL 105 (141)
T ss_dssp ------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHH------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHcC-CCC
Confidence 3444556666788888899999999988886444333344444444443 44566777788888666554 345
Q ss_pred cc----ccccccc
Q 018386 233 TP----VLNRCTR 241 (357)
Q Consensus 233 tp----vl~~ct~ 241 (357)
+| ..+++..
T Consensus 106 ~~eEe~L~~~le~ 118 (141)
T PF13874_consen 106 SPEEEELRKRLEA 118 (141)
T ss_dssp -------------
T ss_pred CHHHHHHHHHHHH
Confidence 55 4555655
No 354
>COG5374 Uncharacterized conserved protein [Function unknown]
Probab=22.21 E-value=1.8e+02 Score=27.80 Aligned_cols=26 Identities=27% Similarity=0.285 Sum_probs=13.0
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHh
Q 018386 158 INSKRAEVDRANERIEKLLASTEQLQ 183 (357)
Q Consensus 158 LK~K~~EvaQAtE~iqKL~q~~EeLQ 183 (357)
.-+++++-.++.+++++-+...|+||
T Consensus 138 ~D~~eA~~t~lk~~~~~~~~~le~Lq 163 (192)
T COG5374 138 IDKMEADSTDLKARLRKAQILLEGLQ 163 (192)
T ss_pred hhhhhcchHHHHHHHhhhhHHHHHHH
Confidence 33444444455555555555555555
No 355
>COG2919 Septum formation initiator [Cell division and chromosome partitioning]
Probab=22.12 E-value=2e+02 Score=24.45 Aligned_cols=28 Identities=25% Similarity=0.368 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 018386 24 LKSQQEQIETLVKEREILEDHLKMQHEK 51 (357)
Q Consensus 24 Lr~~q~QvEsL~~ER~~LEa~ik~QhE~ 51 (357)
+..++++.+.|.+++..|+++|+-++++
T Consensus 59 i~~~~~e~~~L~~~~~~l~~ei~~L~dg 86 (117)
T COG2919 59 IAAQQAELEKLSARNTALEAEIKDLKDG 86 (117)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 3478889999999999999999999886
No 356
>CHL00118 atpG ATP synthase CF0 B' subunit; Validated
Probab=22.05 E-value=5.3e+02 Score=22.46 Aligned_cols=60 Identities=12% Similarity=0.135 Sum_probs=36.2
Q ss_pred hhhhhhhhHhhhhhHHHhhhhhHHHHHHHHHHHHHHHHHHHHH-hhhhhhhhhHHHHHHHH
Q 018386 140 RAFLWNQYKVMENDLTSKINSKRAEVDRANERIEKLLASTEQL-QLSNNEKDETIAKLKTQ 199 (357)
Q Consensus 140 KdFVWNQ~k~ME~Dyt~lLK~K~~EvaQAtE~iqKL~q~~EeL-Q~~nqeKDdeI~RLqak 199 (357)
+.|+|.-+.-+=..-...+.+.-.++.++.+.++.++...+.. +.+..+-.+.|..-+.+
T Consensus 40 ~k~l~~Pi~~~l~~R~~~I~~~l~~Ae~~~~ea~~~~~e~e~~L~~A~~ea~~ii~~A~~~ 100 (156)
T CHL00118 40 NIILYKPLLKVLDERKEYIRKNLTKASEILAKANELTKQYEQELSKARKEAQLEITQSQKE 100 (156)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6788888755444445577777777777777777776665554 44444444444444433
No 357
>PRK14144 heat shock protein GrpE; Provisional
Probab=21.93 E-value=1e+02 Score=29.10 Aligned_cols=6 Identities=33% Similarity=1.215 Sum_probs=4.0
Q ss_pred hhhhHh
Q 018386 144 WNQYKV 149 (357)
Q Consensus 144 WNQ~k~ 149 (357)
|.||+-
T Consensus 9 ~~~~~~ 14 (199)
T PRK14144 9 WKKFKD 14 (199)
T ss_pred HHHHHH
Confidence 777763
No 358
>PRK14151 heat shock protein GrpE; Provisional
Probab=21.75 E-value=93 Score=28.59 Aligned_cols=28 Identities=11% Similarity=0.164 Sum_probs=13.9
Q ss_pred HHHHHHHHHhhhhhhhhhHHHHHHHHHH
Q 018386 174 KLLASTEQLQLSNNEKDETIAKLKTQIA 201 (357)
Q Consensus 174 KL~q~~EeLQ~~nqeKDdeI~RLqak~a 201 (357)
.|.+.++.|+....+-.+...|++|+..
T Consensus 24 ~l~~~i~~le~e~~el~d~~lR~~Ae~e 51 (176)
T PRK14151 24 DLTARVQELEEQLAAAKDQSLRAAADLQ 51 (176)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444455666666653
No 359
>PF07412 Geminin: Geminin; InterPro: IPR022786 This family contains the eukaryotic protein geminin (approximately 200 residues long). Geminin inhibits DNA replication by preventing the incorporation of MCM complex into prereplication complex, and is degraded during the mitotic phase of the cell cycle. It has been proposed that geminin inhibits DNA replication during S, G2, and M phases and that geminin destruction at the metaphase-anaphase transition permits replication in the succeeding cell cycle []. ; GO: 0008156 negative regulation of DNA replication; PDB: 1T6F_B 2LP0_B 1UII_B 2WVR_B 2ZXX_B.
Probab=21.70 E-value=1.4e+02 Score=28.45 Aligned_cols=32 Identities=38% Similarity=0.490 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHH
Q 018386 170 ERIEKLLASTEQLQLSNNEKDETIAKLKTQIA 201 (357)
Q Consensus 170 E~iqKL~q~~EeLQ~~nqeKDdeI~RLqak~a 201 (357)
-+...-++.++.|+.....++++|.+|+.+..
T Consensus 118 ~AL~eaL~ENe~Lh~~ie~~~eEi~~lk~en~ 149 (200)
T PF07412_consen 118 KALEEALEENEKLHKEIEQKDEEIAKLKEENE 149 (200)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455677778888778889999999997754
No 360
>PF05837 CENP-H: Centromere protein H (CENP-H); InterPro: IPR008426 Chromosome segregation in eukaryotes requires the kinetochore, a multi-protein structure that assembles on centromeric DNA, and which acts to link chromosomes to spindle microtubules. Kinetochore structure and composition is highly conserved among vertebrates. The inner kinetochore is essential for kinetochore assembly, and is involved in chromosome segregation via regulation of the spindle. Inner kinetochore components include the multi-subunit CENP-H/I complex, which may function, in part, in directing centromere protein A (CENP-A) deposition to centromeres, where CENP-A is a centromere-specific histone H3 variant required for the organisation of centromeric chromatin during interphase. The CENP-H/I complex contains three functional classes of proteins [, ]: CENP-H class (includes CENP-H, -I, -K, -L) CENP-M class (includes CENP-M) CENP-O class (includes CENP-O, -P, -Q, -R, -50) CENP-H is required for the localisation of CENP-C, but not CENP-A, to the centromere. However, it may be involved in the incorporation of newly synthesised CENP-A into centromeres via its interaction with the CENP-A/CENP-HI complex. CENP-H contains a coiled-coil structure and a nuclear localisation signal. CENP-H is specifically and constitutively localised in kinetochores throughout the cell cycle, and may play a role in kinetochore organisation and function throughout the cell cycle []. Studies show that CENP-H may be associated with certain human cancers [, ]. This entry also includes Kinetochore protein Fta3 which is a subunit of the Sim4 complex. This complex is required for loading the DASH complex onto the kinetochore via interaction with dad1. Fta2, Fta3 and Fta4 associate with the central core and inner repeat region of the centromere [].; GO: 0043515 kinetochore binding, 0007059 chromosome segregation, 0051301 cell division, 0000777 condensed chromosome kinetochore, 0005634 nucleus
Probab=21.66 E-value=4.8e+02 Score=21.83 Aligned_cols=61 Identities=15% Similarity=0.260 Sum_probs=34.8
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHhhhhcccchhhHHHHHHHHHHHHHhh
Q 018386 166 DRANERIEKLLASTEQLQLSNNEKDETIAKLKTQIAQMETGSKKWNTEISRLTQELELLRKS 227 (357)
Q Consensus 166 aQAtE~iqKL~q~~EeLQ~~nqeKDdeI~RLqak~aeMe~~~Kkk~eeIs~L~~eLe~lrk~ 227 (357)
....+.+..+....-++...|+++--+|..|..+...... --+...+|.+++.+|+.-|..
T Consensus 13 ~~l~~~L~~v~~~~l~l~~~n~el~~el~~l~~~~~~~~~-~~~~~~~l~~~~~~lk~~r~~ 73 (106)
T PF05837_consen 13 RSLQEKLSDVEKKRLRLKRRNQELAQELLELAEKQKSQRE-DEELSEKLEKLEKELKKSRQR 73 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcc-chHHHHHHHHHHHHHHHHHHH
Confidence 3334455555555555556666666666666665543222 234456777777777665543
No 361
>PRK11546 zraP zinc resistance protein; Provisional
Probab=21.63 E-value=2.7e+02 Score=25.28 Aligned_cols=18 Identities=39% Similarity=0.540 Sum_probs=9.5
Q ss_pred hHHHHHHHHHHHHHhhcC
Q 018386 212 TEISRLTQELELLRKSRT 229 (357)
Q Consensus 212 eeIs~L~~eLe~lrk~r~ 229 (357)
.||+.|.++|...|-...
T Consensus 96 kEI~~Lr~kL~e~r~~~~ 113 (143)
T PRK11546 96 KEMENLRQSLDELRVKRD 113 (143)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 445556655555554443
No 362
>PF05757 PsbQ: Oxygen evolving enhancer protein 3 (PsbQ); InterPro: IPR008797 Oxygenic photosynthesis uses two multi-subunit photosystems (I and II) located in the cell membranes of cyanobacteria and in the thylakoid membranes of chloroplasts in plants and algae. Photosystem II (PSII) has a P680 reaction centre containing chlorophyll 'a' that uses light energy to carry out the oxidation (splitting) of water molecules, and to produce ATP via a proton pump. Photosystem I (PSI) has a P700 reaction centre containing chlorophyll that takes the electron and associated hydrogen donated from PSII to reduce NADP+ to NADPH. Both ATP and NADPH are subsequently used in the light-independent reactions to convert carbon dioxide to glucose using the hydrogen atom extracted from water by PSII, releasing oxygen as a by-product. PSII is a multisubunit protein-pigment complex containing polypeptides both intrinsic and extrinsic to the photosynthetic membrane [, ]. Within the core of the complex, the chlorophyll and beta-carotene pigments are mainly bound to the antenna proteins CP43 (PsbC) and CP47 (PsbB), which pass the excitation energy on to the reaction centre proteins D1 (Qb, PsbA) and D2 (Qa, PsbD) that bind all the redox-active cofactors involved in the energy conversion process. The PSII oxygen-evolving complex (OEC) oxidises water to provide protons for use by PSI, and consists of OEE1 (PsbO), OEE2 (PsbP) and OEE3 (PsbQ). The remaining subunits in PSII are of low molecular weight (less than 10 kDa), and are involved in PSII assembly, stabilisation, dimerisation, and photo-protection []. In PSII, the oxygen-evolving complex (OEC) is responsible for catalysing the splitting of water to O(2) and 4H+. The OEC is composed of a cluster of manganese, calcium and chloride ions bound to extrinsic proteins. In cyanobacteria there are five extrinsic proteins in OEC (PsbO, PsbP-like, PsbQ-like, PsbU and PsbV), while in plants there are only three (PsbO, PsbP and PsbQ), PsbU and PsbV having been lost during the evolution of green plants []. This family represents the PSII OEC protein PsbQ. Both PsbQ and PsbP (IPR002683 from INTERPRO) are regulators that are necessary for the biogenesis of optically active PSII. The crystal structure of PsbQ from spinach revealed a 4-helical bundle polypeptide. The distribution of positive and negative charges on the protein surface might explain the ability of PsbQ to increase the binding of chloride and calcium ions and make them available to PSII [].; GO: 0005509 calcium ion binding, 0015979 photosynthesis, 0009523 photosystem II, 0009654 oxygen evolving complex, 0019898 extrinsic to membrane; PDB: 1VYK_A 1NZE_A 3LS1_A 3LS0_A.
Probab=21.50 E-value=2.2e+02 Score=27.01 Aligned_cols=46 Identities=28% Similarity=0.380 Sum_probs=36.5
Q ss_pred hhhhhHHHhhhhhHHHHHHH-HHHHHHHHHHHHHHhhhhhhhhhHHH
Q 018386 149 VMENDLTSKINSKRAEVDRA-NERIEKLLASTEQLQLSNNEKDETIA 194 (357)
Q Consensus 149 ~ME~Dyt~lLK~K~~EvaQA-tE~iqKL~q~~EeLQ~~nqeKDdeI~ 194 (357)
.|-.|+..++-.|-.+-.++ +.-+.+|-.++|+|.-++..||.--.
T Consensus 137 ~Lr~DL~~liss~p~~~kk~l~~La~~lf~~ie~LD~Aar~K~~~~a 183 (202)
T PF05757_consen 137 YLRYDLNTLISSKPKDEKKALTDLANKLFDNIEELDYAARSKDVPEA 183 (202)
T ss_dssp CHHHHHHHHHCCS-HHHHHHHHHHHHHHHHHHHHHHHHHHTT-HHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHH
Confidence 58899999999987666655 88899999999999988888876433
No 363
>PHA03185 UL14 tegument protein; Provisional
Probab=21.49 E-value=5.4e+02 Score=25.09 Aligned_cols=41 Identities=15% Similarity=0.204 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhHHHHHHh
Q 018386 25 KSQQEQIETLVKEREILEDHLKMQHEKWVSDVRLYEDHISQ 65 (357)
Q Consensus 25 r~~q~QvEsL~~ER~~LEa~ik~QhE~W~sdv~~lqdrLsq 65 (357)
+.-|.-||+=++-|.+|.....+++-...+....-+|.|-.
T Consensus 75 r~Iq~rVEeQ~a~r~iL~~hRRyL~pdf~e~lD~~ED~l~e 115 (214)
T PHA03185 75 ACVKIRVEEQAERRDFLIAHRRYLDPALGERLDEAEDRLAD 115 (214)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHH
Confidence 44577889999999999999999999777666666665544
No 364
>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure. It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.
Probab=21.48 E-value=3.7e+02 Score=21.18 Aligned_cols=35 Identities=26% Similarity=0.332 Sum_probs=17.5
Q ss_pred hHHHHHHHHHHhhhhcccchhhHHHHHHHHHHHHH
Q 018386 191 ETIAKLKTQIAQMETGSKKWNTEISRLTQELELLR 225 (357)
Q Consensus 191 deI~RLqak~aeMe~~~Kkk~eeIs~L~~eLe~lr 225 (357)
+++.+.++---..++-.++....+..|..+++.|+
T Consensus 18 eEL~kvk~~n~~~e~kLqeaE~rn~eL~~ei~~L~ 52 (61)
T PF08826_consen 18 EELTKVKSANLAFESKLQEAEKRNRELEQEIERLK 52 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444455555555555555555555554
No 365
>PF09325 Vps5: Vps5 C terminal like; InterPro: IPR015404 Vps5 is a sorting nexin that functions in membrane trafficking. This is the C-terminal dimerisation domain [].
Probab=21.46 E-value=5.8e+02 Score=22.69 Aligned_cols=52 Identities=19% Similarity=0.302 Sum_probs=38.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHhhhhcccchhh
Q 018386 161 KRAEVDRANERIEKLLASTEQLQLSNNEKDETIAKLKTQIAQMETGSKKWNT 212 (357)
Q Consensus 161 K~~EvaQAtE~iqKL~q~~EeLQ~~nqeKDdeI~RLqak~aeMe~~~Kkk~e 212 (357)
+-.+...|....++..+..+.|...+..+.+.+..++.++.+++.-......
T Consensus 133 ~~~~~~~a~~~l~kkk~~~~kl~~~~~~~~~k~~~~~~ei~~~~~~~~~~~~ 184 (236)
T PF09325_consen 133 KLIEYQNAEKELQKKKAQLEKLKASGKNRQDKVEQAENEIEEAERRVEQAKD 184 (236)
T ss_pred HHHHHHHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456677888888888888888888777788888888888866654443333
No 366
>PF07464 ApoLp-III: Apolipophorin-III precursor (apoLp-III); InterPro: IPR010009 This family consists of several insect apolipoprotein-III sequences. Exchangeable apolipoproteins constitute a functionally important family of proteins that play critical roles in lipid transport and lipoprotein metabolism. Apolipophorin III (apoLp-III) is a prototypical exchangeable apolipoprotein found in many insect species that functions in transport of diacylglycerol (DAG) from the fat body lipid storage depot to flight muscles in the adult life stage [].; GO: 0008289 lipid binding, 0006869 lipid transport, 0005576 extracellular region; PDB: 1EQ1_A.
Probab=21.46 E-value=2.8e+02 Score=25.18 Aligned_cols=90 Identities=21% Similarity=0.287 Sum_probs=60.9
Q ss_pred HHHHHHhhhchhHHHHHHHHHHHHhcCCCCCCcchhhHHhhhhhhhhhhhhhHhhhhhHHHhhhhhHHHH-HHHHHHHHH
Q 018386 96 SLLKLMLEYTDDQLADFMAWFDLLRQKPKDGEPKSIEVSAFLDERAFLWNQYKVMENDLTSKINSKRAEV-DRANERIEK 174 (357)
Q Consensus 96 ~l~k~~lE~teDeL~DFka~~~~L~~~lke~SeKdkEVsALlaEKdFVWNQ~k~ME~Dyt~lLK~K~~Ev-aQAtE~iqK 174 (357)
++.+-+-+.++.=+...+.++..|..+++..+.+ +.. +|.+|+..=..-++.|++.+-|+ ++|++--.+
T Consensus 27 Ev~~aik~~sd~~~~~l~~~~~~l~eeik~~n~~---~~e-------~l~~~~~kl~et~~~L~k~~Pev~~qa~~l~e~ 96 (155)
T PF07464_consen 27 EVVKAIKEQSDSVAQQLQNVSSSLQEEIKDANPE---AEE-------ALKQLKTKLEETAEKLRKANPEVEKQANELQEK 96 (155)
T ss_dssp -SSHHHHHHHHHHHHHHHHHHHHHHHHHTT-SST---HHH-------HHHHHHHHHHHHHHGGGG-SHHHHHT-SSSHHH
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHhcChh---HHH-------HHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHH
Confidence 3445555666655677777777777777765443 332 69999999888899999876665 567777788
Q ss_pred HHHHHHHHhhhhhhhhhHHHH
Q 018386 175 LLASTEQLQLSNNEKDETIAK 195 (357)
Q Consensus 175 L~q~~EeLQ~~nqeKDdeI~R 195 (357)
|+.++.-|-...++=..+|.+
T Consensus 97 lQ~~vq~l~~E~qk~~k~v~~ 117 (155)
T PF07464_consen 97 LQSAVQSLVQESQKLAKEVSE 117 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 888888887666665555543
No 367
>PRK00295 hypothetical protein; Provisional
Probab=21.36 E-value=3.5e+02 Score=21.27 Aligned_cols=11 Identities=27% Similarity=0.528 Sum_probs=4.6
Q ss_pred hhHHHHHHHHH
Q 018386 190 DETIAKLKTQI 200 (357)
Q Consensus 190 DdeI~RLqak~ 200 (357)
..+|.+|+.++
T Consensus 32 q~~I~~L~~ql 42 (68)
T PRK00295 32 QRVIERLQLQM 42 (68)
T ss_pred HHHHHHHHHHH
Confidence 33444444433
No 368
>PF12240 Angiomotin_C: Angiomotin C terminal; InterPro: IPR024646 This domain represents the C-terminal region of angiomotin. Angiomotin regulates the action of angiogenesis-inhibitor angiostatin []. The C-terminal region of angiomotin appears to be involved in directing the protein chemotactically [].
Probab=21.28 E-value=2.2e+02 Score=27.44 Aligned_cols=42 Identities=33% Similarity=0.538 Sum_probs=31.6
Q ss_pred HHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHhhhhcccchhhHHHHHHHHHHHHHhhc
Q 018386 170 ERIEKLLASTEQLQLSNNEKDETIAKLKTQIAQMETGSKKWNTEISRLTQELELLRKSR 228 (357)
Q Consensus 170 E~iqKL~q~~EeLQ~~nqeKDdeI~RLqak~aeMe~~~Kkk~eeIs~L~~eLe~lrk~r 228 (357)
|+..+||+-+-+||.+-.++..-=-||.+. |++||+.||.--
T Consensus 3 ekv~~LQ~AL~~LQaa~ekRE~lE~rLR~~-----------------lE~EL~~lr~qq 44 (205)
T PF12240_consen 3 EKVERLQQALAQLQAACEKREQLERRLRTR-----------------LERELESLRAQQ 44 (205)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------------HHHHHHHHHHhh
Confidence 567899999999999888776655566554 578888887543
No 369
>PHA03246 large tegument protein UL36; Provisional
Probab=21.04 E-value=3.4e+02 Score=34.96 Aligned_cols=62 Identities=19% Similarity=0.294 Sum_probs=48.5
Q ss_pred HHHHHHHHHHHHHHHHH--HHHHHHHHHHhhhhhhhhhhhhHHHHHHhHHhHHHHHHHHHHHHHh
Q 018386 20 LVKMLKSQQEQIETLVK--EREILEDHLKMQHEKWVSDVRLYEDHISQMKSEIVAQELIHLLDAA 82 (357)
Q Consensus 20 LVkMLr~~q~QvEsL~~--ER~~LEa~ik~QhE~W~sdv~~lqdrLsqm~~el~~eE~~~~~EaA 82 (357)
+|.+-+++-.++|..++ +|.+.+..-..++|+|.+|+.-+=+++.. +.++...|+.++-+.|
T Consensus 1361 ~i~aarqR~~Ele~a~ad~e~~~~~~~~~~~~erW~~di~AaL~r~Et-rseFDa~EL~RLrd~A 1424 (3095)
T PHA03246 1361 LIESVNQRVGELDIALQTYERNRISAERSRSEDLWTSSITSLLVNAEI-KSEFDAMEINSLEETA 1424 (3095)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-hhhccHHHHHHHHHHH
Confidence 77788888888888886 57788888899999999999988777654 5567777776665533
No 370
>PRK14147 heat shock protein GrpE; Provisional
Probab=21.01 E-value=88 Score=28.58 Aligned_cols=41 Identities=15% Similarity=0.205 Sum_probs=21.6
Q ss_pred HHHhhhhhhhhhHHHHHHHHHHhhhhcccchhhHHHHHHHHHHHHHhhcCC
Q 018386 180 EQLQLSNNEKDETIAKLKTQIAQMETGSKKWNTEISRLTQELELLRKSRTA 230 (357)
Q Consensus 180 EeLQ~~nqeKDdeI~RLqak~aeMe~~~Kkk~eeIs~L~~eLe~lrk~r~a 230 (357)
+.|+....+-.+...|++|+.. .=.-+..+|.+.+++.-..
T Consensus 28 ~~l~~e~~elkd~~lR~~Ad~e----------N~rkR~~kE~e~~~~~a~~ 68 (172)
T PRK14147 28 ESLRSEIALVKADALRERADLE----------NQRKRIARDVEQARKFANE 68 (172)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHH
Confidence 3333333333466677777763 3334555566666655543
No 371
>PF10376 Mei5: Double-strand recombination repair protein ; InterPro: IPR018468 Mei5 is one of a pair of meiosis-specific proteins which facilitate the loading of Dmc1 on to Rad51 on DNA at double-strand breaks during recombination. Recombination is carried out by a large protein complex based around the two RecA homologues, Rad51 and Dmc1 []. This complex may play both a catalytic and a structural role in the interaction between homologous chromosomes during meiosis. Mei5 is seen to contain a coiled-coli region.
Probab=20.92 E-value=2.5e+02 Score=26.80 Aligned_cols=43 Identities=28% Similarity=0.476 Sum_probs=26.3
Q ss_pred HHhhhhhhhhhHHHHHH--------HHHHhhhhcccchhhHHHHHHHHHHH
Q 018386 181 QLQLSNNEKDETIAKLK--------TQIAQMETGSKKWNTEISRLTQELEL 223 (357)
Q Consensus 181 eLQ~~nqeKDdeI~RLq--------ak~aeMe~~~Kkk~eeIs~L~~eLe~ 223 (357)
+|+...+++.+++.+|. ..+.+|+.+.++|..--...-.+|+.
T Consensus 142 kL~~q~~e~~e~lr~L~~~k~~r~Kn~~~~Lq~lI~Kwr~~~q~~l~eL~~ 192 (221)
T PF10376_consen 142 KLEKQVDEKEEELRRLKLVKQYRSKNDLEQLQSLIKKWRSASQEALYELQS 192 (221)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444566665553 34557778888887766666666664
No 372
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=20.45 E-value=1e+03 Score=25.20 Aligned_cols=174 Identities=16% Similarity=0.192 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHH-HhhhhhhhhhhhhHHHHHHhHHhHHHHHHHHHHHHHhhhhhhhchhhHHHHHHHHHhhhch
Q 018386 28 QEQIETLVKEREILEDHL-KMQHEKWVSDVRLYEDHISQMKSEIVAQELIHLLDAAKSDMVVGLKLREASLLKLMLEYTD 106 (357)
Q Consensus 28 q~QvEsL~~ER~~LEa~i-k~QhE~W~sdv~~lqdrLsqm~~el~~eE~~~~~EaAk~~l~LGlK~RE~~l~k~~lE~te 106 (357)
..+++.+-.....+...| ...-+.=.....-.+++|.++...+..|--.+..- +....-+...+++..
T Consensus 251 ~~~i~~i~~~l~~~~~~L~~l~l~~~~~~~~~i~~~Id~lYd~le~E~~Ak~~V-----------~~~~~~l~~~l~~~~ 319 (560)
T PF06160_consen 251 EEEIEQIEEQLEEALALLKNLELDEVEEENEEIEERIDQLYDILEKEVEAKKYV-----------EKNLKELYEYLEHAK 319 (560)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHhHHHHHHHHHHHH
Q ss_pred hHHHHHHHHHHHHhcCCCCCCcchhhHHhhhhhhhhhhhhhHhhhhhH---HHhhhhhHHHHHHHHHHHHHHHHHHHHHh
Q 018386 107 DQLADFMAWFDLLRQKPKDGEPKSIEVSAFLDERAFLWNQYKVMENDL---TSKINSKRAEVDRANERIEKLLASTEQLQ 183 (357)
Q Consensus 107 DeL~DFka~~~~L~~~lke~SeKdkEVsALlaEKdFVWNQ~k~ME~Dy---t~lLK~K~~EvaQAtE~iqKL~q~~EeLQ 183 (357)
+.-..+...++.|++.|.-...--..+..|. +|++.++..| ...+..+..---+..+....+...+++++
T Consensus 320 ~~~~~l~~e~~~v~~sY~L~~~e~~~~~~l~-------~~l~~l~~~~~~~~~~i~~~~~~yS~i~~~l~~~~~~l~~ie 392 (560)
T PF06160_consen 320 EQNKELKEELERVSQSYTLNHNELEIVRELE-------KQLKELEKRYEDLEERIEEQQVPYSEIQEELEEIEEQLEEIE 392 (560)
T ss_pred HHHHHHHHHHHHHHHhcCCCchHHHHHHHHH-------HHHHHHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHHHHHHH
Q ss_pred hhhhhhhhHHHHHHHHHHhhhhcccchhhHHHHHHHHHHHHHh
Q 018386 184 LSNNEKDETIAKLKTQIAQMETGSKKWNTEISRLTQELELLRK 226 (357)
Q Consensus 184 ~~nqeKDdeI~RLqak~aeMe~~~Kkk~eeIs~L~~eLe~lrk 226 (357)
..-.+-.+.+..|...-. .+.+.+..+...|..++.
T Consensus 393 ~~q~~~~~~l~~L~~dE~-------~Ar~~l~~~~~~l~~ikR 428 (560)
T PF06160_consen 393 EEQEEINESLQSLRKDEK-------EAREKLQKLKQKLREIKR 428 (560)
T ss_pred HHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHH
No 373
>PRK14154 heat shock protein GrpE; Provisional
Probab=20.27 E-value=1.1e+02 Score=29.16 Aligned_cols=30 Identities=13% Similarity=0.183 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHhhhhhhhhhHHHHHHHHHH
Q 018386 172 IEKLLASTEQLQLSNNEKDETIAKLKTQIA 201 (357)
Q Consensus 172 iqKL~q~~EeLQ~~nqeKDdeI~RLqak~a 201 (357)
+..|.+.++.|+....+-.+...|++|+..
T Consensus 54 ~~~l~~el~~le~e~~elkd~~lRl~ADfe 83 (208)
T PRK14154 54 REKLEGQLTRMERKVDEYKTQYLRAQAEMD 83 (208)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444554444444566777777764
No 374
>PF08657 DASH_Spc34: DASH complex subunit Spc34 ; InterPro: IPR013966 The DASH complex is a ~10 subunit microtubule-binding complex that is transferred to the kinetochore prior to mitosis []. In Saccharomyces cerevisiae (Baker's yeast) DASH forms both rings and spiral structures on microtubules in vitro [, ]. Components of the DASH complex, including Dam1, Duo1, Spc34, Dad1 and Ask1, are essential and connect the centromere to the plus end of spindle microtubules [].
Probab=20.25 E-value=2.9e+02 Score=26.92 Aligned_cols=56 Identities=27% Similarity=0.301 Sum_probs=29.5
Q ss_pred hHHhhhhhhhhhhhhhHhhhhhHHHhhhhhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHhh
Q 018386 132 EVSAFLDERAFLWNQYKVMENDLTSKINSKRAEVDRANERIEKLLASTEQLQLSNNEKDETIAKLKTQIAQM 203 (357)
Q Consensus 132 EVsALlaEKdFVWNQ~k~ME~Dyt~lLK~K~~EvaQAtE~iqKL~q~~EeLQ~~nqeKDdeI~RLqak~aeM 203 (357)
.|.-||..=.=++|+|=+- -|.|+|..|++.-+.|+..-+.-..+|..-++.+..|
T Consensus 158 dvevLL~~ae~L~~vYP~~----------------ga~eki~~Lr~~y~~l~~~i~~lE~~VaeQ~~qL~~~ 213 (259)
T PF08657_consen 158 DVEVLLRGAEKLCNVYPLP----------------GAREKIAALRQRYNQLSNSIAYLEAEVAEQEAQLERM 213 (259)
T ss_pred CHHHHHHHHHHHHHhCCCh----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555566666433 4555555555555555554444444554444444444
No 375
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=20.21 E-value=5.5e+02 Score=21.92 Aligned_cols=93 Identities=19% Similarity=0.195 Sum_probs=0.0
Q ss_pred hhHHhhhhhhhhhhhhhHhhhhhHHHhhhhhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHhhhhcccch
Q 018386 131 IEVSAFLDERAFLWNQYKVMENDLTSKINSKRAEVDRANERIEKLLASTEQLQLSNNEKDETIAKLKTQIAQMETGSKKW 210 (357)
Q Consensus 131 kEVsALlaEKdFVWNQ~k~ME~Dyt~lLK~K~~EvaQAtE~iqKL~q~~EeLQ~~nqeKDdeI~RLqak~aeMe~~~Kkk 210 (357)
.++..|..+-.=+=.+....+.....+...-+.....|+++=++ +-.+|+.-+.. -..|..|++++.++......+
T Consensus 3 ~e~~~l~~e~~~~~~~~~~~~~~~~~~~~dl~~q~~~a~~Aq~~---YE~El~~Ha~~-~~~L~~lr~e~~~~~~~~~~l 78 (132)
T PF07926_consen 3 SELSSLQSELQRLKEQEEDAEEQLQSLREDLESQAKIAQEAQQK---YERELVKHAED-IKELQQLREELQELQQEINEL 78 (132)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHhHHH-HHHHHHHHHHHHHHHHHHHHH
Q ss_pred hhHHHHHHHHHHHHHhh
Q 018386 211 NTEISRLTQELELLRKS 227 (357)
Q Consensus 211 ~eeIs~L~~eLe~lrk~ 227 (357)
..+.......|...+.+
T Consensus 79 ~~~~~~a~~~l~~~e~s 95 (132)
T PF07926_consen 79 KAEAESAKAELEESEAS 95 (132)
T ss_pred HHHHHHHHHHHHHHHHh
No 376
>PRK14140 heat shock protein GrpE; Provisional
Probab=20.18 E-value=1.6e+02 Score=27.60 Aligned_cols=29 Identities=17% Similarity=0.302 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHhhhhhhhhhHHHHHHHHH
Q 018386 172 IEKLLASTEQLQLSNNEKDETIAKLKTQI 200 (357)
Q Consensus 172 iqKL~q~~EeLQ~~nqeKDdeI~RLqak~ 200 (357)
+..|.+.++.|+....+--+...|++|+.
T Consensus 39 ~~~l~~~i~~l~~ei~elkd~~lR~~Ae~ 67 (191)
T PRK14140 39 LDEEQAKIAELEAKLDELEERYLRLQADF 67 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444433333334455555544
No 377
>PF13971 Mei4: Meiosis-specific protein Mei4
Probab=20.17 E-value=1.2e+02 Score=31.41 Aligned_cols=32 Identities=31% Similarity=0.515 Sum_probs=28.3
Q ss_pred HHHHHHHHhhhhhhhhhhhhHHHHHHhHHhHH
Q 018386 39 EILEDHLKMQHEKWVSDVRLYEDHISQMKSEI 70 (357)
Q Consensus 39 ~~LEa~ik~QhE~W~sdv~~lqdrLsqm~~el 70 (357)
++|...++-|.+.|.+.++.||..+.+.+.++
T Consensus 44 E~La~~l~~qd~~WK~kae~LE~EvLqlrQeL 75 (375)
T PF13971_consen 44 EHLAKRLSEQDESWKSKAEALEAEVLQLRQEL 75 (375)
T ss_pred HHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 46788899999999999999999999988665
No 378
>PRK02119 hypothetical protein; Provisional
Probab=20.14 E-value=4.3e+02 Score=21.06 Aligned_cols=29 Identities=10% Similarity=0.287 Sum_probs=16.7
Q ss_pred hhHHHHHHHHHHhhhhcccchhhHHHHHHHHHHHHH
Q 018386 190 DETIAKLKTQIAQMETGSKKWNTEISRLTQELELLR 225 (357)
Q Consensus 190 DdeI~RLqak~aeMe~~~Kkk~eeIs~L~~eLe~lr 225 (357)
++.|..|..-++ +-..+|..|.+.|..|+
T Consensus 22 E~tie~LN~~v~-------~Qq~~id~L~~ql~~L~ 50 (73)
T PRK02119 22 ENLLEELNQALI-------EQQFVIDKMQVQLRYMA 50 (73)
T ss_pred HHHHHHHHHHHH-------HHHHHHHHHHHHHHHHH
Confidence 555666655555 34455666666666553
No 379
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=20.09 E-value=3.4e+02 Score=26.28 Aligned_cols=40 Identities=13% Similarity=0.307 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHH
Q 018386 162 RAEVDRANERIEKLLASTEQLQLSNNEKDETIAKLKTQIA 201 (357)
Q Consensus 162 ~~EvaQAtE~iqKL~q~~EeLQ~~nqeKDdeI~RLqak~a 201 (357)
+.|.+.=.-+-.+++..++.|+...+++++|++||-++-.
T Consensus 164 ~~el~~~~~~Le~~~~~~~al~Kq~e~~~~EydrLlee~~ 203 (216)
T KOG1962|consen 164 ETELEKKQKKLEKAQKKVDALKKQSEGLQDEYDRLLEEYS 203 (216)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHH
Confidence 3344444444555666777777777788888888876654
Done!