Query 018386
Match_columns 357
No_of_seqs 22 out of 24
Neff 2.8
Searched_HMMs 29240
Date Mon Mar 25 14:27:01 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018386.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/018386hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3na7_A HP0958; flagellar bioge 96.8 0.12 4E-06 46.7 18.0 127 106-236 66-197 (256)
2 3nmd_A CGMP dependent protein 95.1 0.023 8E-07 44.7 4.5 49 178-226 20-68 (72)
3 3oja_B Anopheles plasmodium-re 94.5 0.098 3.3E-06 50.5 8.1 60 166-225 512-571 (597)
4 1ic2_A Tropomyosin alpha chain 93.4 0.47 1.6E-05 36.6 8.6 73 157-229 7-79 (81)
5 3vkg_A Dynein heavy chain, cyt 92.6 5.3 0.00018 48.4 19.5 21 204-224 2083-2103(3245)
6 1zxa_A CGMP-dependent protein 90.7 0.22 7.6E-06 38.6 3.8 45 178-229 12-56 (67)
7 3u59_A Tropomyosin beta chain; 89.3 1.6 5.3E-05 34.9 7.8 73 157-229 10-82 (101)
8 2jee_A YIIU; FTSZ, septum, coi 89.3 1.3 4.6E-05 35.4 7.3 59 157-222 7-79 (81)
9 3u1c_A Tropomyosin alpha-1 cha 88.1 2 7E-05 34.5 7.8 73 157-229 10-82 (101)
10 2dfs_A Myosin-5A; myosin-V, in 88.0 31 0.0011 37.6 19.1 29 156-184 984-1012(1080)
11 1c1g_A Tropomyosin; contractIl 87.9 9.9 0.00034 31.0 20.5 31 193-223 211-241 (284)
12 1x79_B RAB GTPase binding effe 87.9 5.4 0.00018 33.5 10.4 74 12-88 4-77 (112)
13 3na7_A HP0958; flagellar bioge 87.4 3.5 0.00012 37.1 9.8 77 164-243 105-185 (256)
14 3oja_B Anopheles plasmodium-re 86.7 7 0.00024 37.6 12.0 116 93-222 463-582 (597)
15 3iv1_A Tumor susceptibility ge 83.6 5.7 0.0002 31.6 8.1 64 156-226 10-74 (78)
16 1t2k_D Cyclic-AMP-dependent tr 82.4 2.9 0.0001 30.5 5.7 52 175-226 6-57 (61)
17 2dfs_A Myosin-5A; myosin-V, in 82.0 11 0.00039 40.9 12.3 15 212-226 1063-1077(1080)
18 2eqb_B RAB guanine nucleotide 81.6 2.9 9.8E-05 34.5 5.9 53 173-225 8-60 (97)
19 1ci6_A Transcription factor AT 81.4 1.6 5.5E-05 32.5 4.0 53 174-226 6-58 (63)
20 1t6f_A Geminin; coiled-coil, c 81.4 2.2 7.4E-05 30.0 4.3 28 175-202 5-32 (37)
21 3tnu_A Keratin, type I cytoske 81.3 21 0.00072 29.4 11.2 83 20-103 43-129 (131)
22 2wt7_A Proto-oncogene protein 80.4 4 0.00014 30.2 5.9 52 175-226 7-58 (63)
23 3trt_A Vimentin; cytoskeleton, 78.9 14 0.00048 27.5 8.6 45 175-226 33-77 (77)
24 3tnu_B Keratin, type II cytosk 78.3 27 0.00091 28.7 10.9 83 20-103 41-127 (129)
25 1jnm_A Proto-oncogene C-JUN; B 78.1 2.9 9.8E-05 30.8 4.4 50 176-225 7-56 (62)
26 2p2u_A HOST-nuclease inhibitor 78.1 4 0.00014 35.5 6.1 65 167-234 17-81 (171)
27 3mq7_A Bone marrow stromal ant 77.6 9.6 0.00033 32.6 8.0 60 158-227 41-100 (121)
28 3hnw_A Uncharacterized protein 77.5 4.3 0.00015 34.5 5.9 51 174-224 72-122 (138)
29 4dvy_P Cytotoxicity-associated 76.5 83 0.0029 33.4 16.1 189 24-234 612-825 (876)
30 1gk4_A Vimentin; intermediate 75.4 21 0.00072 27.6 8.9 75 30-105 2-80 (84)
31 3nmd_A CGMP dependent protein 75.3 7.4 0.00025 30.6 6.2 44 162-205 25-68 (72)
32 3htk_A Structural maintenance 74.5 4.9 0.00017 28.7 4.8 55 170-224 5-59 (60)
33 2v71_A Nuclear distribution pr 73.0 53 0.0018 29.6 16.5 48 178-225 131-181 (189)
34 1x8y_A Lamin A/C; structural p 67.8 20 0.00068 28.0 7.2 75 29-104 3-81 (86)
35 2ocy_A RAB guanine nucleotide 67.8 63 0.0022 28.3 11.2 54 155-208 93-146 (154)
36 3vkg_A Dynein heavy chain, cyt 67.2 1.9E+02 0.0066 35.6 18.3 47 20-70 1904-1950(3245)
37 3i00_A HIP-I, huntingtin-inter 66.7 27 0.00092 29.3 8.2 70 160-234 12-88 (120)
38 3ol1_A Vimentin; structural ge 66.3 50 0.0017 27.0 9.7 37 191-227 69-105 (119)
39 2i1j_A Moesin; FERM, coiled-co 66.0 6.9 0.00024 39.6 5.4 168 39-221 278-449 (575)
40 1l8d_A DNA double-strand break 61.5 50 0.0017 25.7 8.5 72 157-228 18-101 (112)
41 2ocy_A RAB guanine nucleotide 61.4 32 0.0011 30.2 8.0 48 177-224 44-91 (154)
42 2q6q_A Spindle POLE BODY compo 60.9 8 0.00027 30.6 3.7 52 176-227 2-53 (74)
43 2jee_A YIIU; FTSZ, septum, coi 60.8 33 0.0011 27.4 7.3 60 166-225 9-68 (81)
44 1wlq_A Geminin; coiled-coil; 2 59.9 19 0.00064 29.1 5.8 42 165-206 26-67 (83)
45 1hjb_A Ccaat/enhancer binding 59.7 19 0.00064 28.8 5.8 47 183-229 28-74 (87)
46 2v4h_A NF-kappa-B essential mo 59.4 21 0.00073 30.0 6.3 20 207-226 85-104 (110)
47 1lwu_C Fibrinogen gamma chain; 59.3 3.8 0.00013 39.3 2.0 50 168-224 3-52 (323)
48 3ghg_A Fibrinogen alpha chain; 59.2 22 0.00074 36.9 7.5 81 110-201 60-155 (562)
49 3u59_A Tropomyosin beta chain; 59.2 64 0.0022 25.5 10.3 89 132-224 10-98 (101)
50 4emc_A Monopolin complex subun 57.3 17 0.00059 33.1 5.8 61 165-225 15-82 (190)
51 2avr_X Adhesion A; antiparalle 56.6 72 0.0025 27.1 9.1 74 143-220 7-90 (119)
52 3etw_A Adhesin A; antiparallel 54.6 97 0.0033 26.1 9.6 78 143-221 7-98 (119)
53 1m1j_C Fibrinogen gamma chain; 54.6 1.9 6.5E-05 42.6 -1.0 51 168-225 82-132 (409)
54 1m1j_C Fibrinogen gamma chain; 54.1 55 0.0019 32.3 9.2 84 141-225 27-118 (409)
55 1deq_A Fibrinogen (alpha chain 53.5 54 0.0018 32.7 9.0 81 110-201 63-158 (390)
56 3vmx_A Voltage-gated hydrogen 53.1 17 0.00057 26.8 4.1 30 172-201 13-42 (48)
57 3oja_A Leucine-rich immune mol 52.4 62 0.0021 30.6 9.1 13 109-121 323-335 (487)
58 3mov_A Lamin-B1; LMNB1, B-type 52.4 38 0.0013 27.2 6.5 78 26-104 9-90 (95)
59 1f5n_A Interferon-induced guan 51.6 1.1E+02 0.0036 31.3 11.1 67 27-94 492-558 (592)
60 3hnw_A Uncharacterized protein 51.3 60 0.002 27.5 7.9 35 164-198 97-131 (138)
61 2zqm_A Prefoldin beta subunit 51.2 68 0.0023 24.8 7.7 39 188-226 67-105 (117)
62 3a7o_A Autophagy protein 16; c 51.2 33 0.0011 27.2 5.8 37 178-214 19-55 (75)
63 3ghg_C Fibrinogen gamma chain; 51.1 79 0.0027 31.5 9.8 57 166-229 80-136 (411)
64 3u1c_A Tropomyosin alpha-1 cha 51.0 92 0.0031 24.8 10.3 89 132-224 10-98 (101)
65 2dgc_A Protein (GCN4); basic d 50.8 19 0.00067 26.8 4.3 46 174-219 13-58 (63)
66 1gu4_A CAAT/enhancer binding p 49.8 52 0.0018 25.7 6.7 53 175-227 20-72 (78)
67 3hhm_B NISH2 P85alpha; PI3KCA, 48.3 25 0.00085 34.1 5.7 83 144-231 174-259 (373)
68 3o0z_A RHO-associated protein 46.8 1.6E+02 0.0054 26.2 14.5 40 144-183 85-124 (168)
69 1gd2_E Transcription factor PA 44.9 16 0.00054 28.2 3.0 39 186-224 24-62 (70)
70 4etp_A Kinesin-like protein KA 44.5 28 0.00096 33.7 5.4 49 178-226 11-59 (403)
71 3bas_A Myosin heavy chain, str 44.0 1.1E+02 0.0038 23.8 8.0 24 160-183 18-41 (89)
72 2zxx_A Geminin; coiled-coil, c 43.8 44 0.0015 26.6 5.5 34 166-199 23-56 (79)
73 4dk0_A Putative MACA; alpha-ha 43.5 1.8E+02 0.0062 26.0 10.5 47 192-240 116-162 (369)
74 3o0z_A RHO-associated protein 43.1 1.4E+02 0.0047 26.6 9.1 76 151-226 25-111 (168)
75 2e7s_A RAB guanine nucleotide 42.9 46 0.0016 28.7 5.9 49 176-224 31-79 (135)
76 3mq9_A Bone marrow stromal ant 41.0 1.3E+02 0.0046 28.2 9.3 27 199-225 444-470 (471)
77 1go4_E MAD1 (mitotic arrest de 40.9 18 0.0006 29.9 2.9 46 191-237 12-60 (100)
78 4gkw_A Spindle assembly abnorm 40.2 2E+02 0.0067 25.5 9.8 105 101-219 5-119 (167)
79 1ses_A Seryl-tRNA synthetase; 39.8 84 0.0029 30.5 8.0 71 156-226 28-99 (421)
80 3jsv_C NF-kappa-B essential mo 39.5 50 0.0017 27.1 5.4 23 205-227 61-83 (94)
81 2no2_A HIP-I, huntingtin-inter 38.8 1.6E+02 0.0054 24.0 8.8 59 166-224 43-101 (107)
82 4gkw_A Spindle assembly abnorm 38.6 1.1E+02 0.0039 26.9 7.8 25 128-152 57-81 (167)
83 3a2a_A Voltage-gated hydrogen 38.4 36 0.0012 25.9 4.0 29 174-202 22-50 (58)
84 3oja_A Leucine-rich immune mol 38.2 2.3E+02 0.0077 26.8 10.5 24 200-223 437-460 (487)
85 4etp_A Kinesin-like protein KA 36.8 44 0.0015 32.3 5.5 63 167-229 7-69 (403)
86 1j1d_C Troponin I, TNI; THIN f 36.0 1.2E+02 0.0042 25.9 7.4 60 178-240 59-118 (133)
87 1wle_A Seryl-tRNA synthetase; 35.4 92 0.0031 31.3 7.6 36 191-226 116-151 (501)
88 3swk_A Vimentin; cytoskeleton, 35.2 1.6E+02 0.0054 23.0 8.2 63 164-226 22-84 (86)
89 3tnu_B Keratin, type II cytosk 35.2 1.8E+02 0.0062 23.6 8.6 13 209-221 93-105 (129)
90 2dq0_A Seryl-tRNA synthetase; 34.7 80 0.0027 31.1 7.0 37 191-227 69-105 (455)
91 2oqq_A Transcription factor HY 33.7 44 0.0015 24.1 3.6 33 194-226 6-38 (42)
92 2l5g_B Putative uncharacterize 33.4 75 0.0026 22.8 4.8 35 153-187 6-40 (42)
93 1go4_E MAD1 (mitotic arrest de 33.3 1.5E+02 0.0051 24.4 7.2 60 168-227 10-90 (100)
94 3mq9_A Bone marrow stromal ant 33.2 2.2E+02 0.0074 26.8 9.4 26 192-217 444-469 (471)
95 3tnu_A Keratin, type I cytoske 32.8 2E+02 0.0069 23.5 8.2 24 132-155 53-76 (131)
96 3qh9_A Liprin-beta-2; coiled-c 32.6 1.6E+02 0.0056 23.6 7.2 19 203-221 59-77 (81)
97 1zxa_A CGMP-dependent protein 32.4 51 0.0017 25.5 4.1 28 179-206 27-54 (67)
98 1fxk_A Prefoldin; archaeal pro 32.4 1.6E+02 0.0056 22.3 8.0 40 187-226 61-100 (107)
99 2ve7_A Kinetochore protein HEC 31.5 1E+02 0.0034 28.9 6.8 34 187-227 181-214 (315)
100 3qne_A Seryl-tRNA synthetase, 31.3 1.2E+02 0.004 30.6 7.6 35 192-226 72-106 (485)
101 3mtu_A Tropomyosin alpha-1 cha 30.7 36 0.0012 26.1 3.1 21 132-152 24-44 (75)
102 4ani_A Protein GRPE; chaperone 29.8 39 0.0013 30.8 3.5 48 173-230 62-109 (213)
103 2wt7_A Proto-oncogene protein 29.6 1.1E+02 0.0039 22.3 5.5 36 168-203 21-56 (63)
104 1j1e_C Troponin I, TNI; THIN f 29.1 1.6E+02 0.0056 26.4 7.4 61 178-241 59-119 (180)
105 3swf_A CGMP-gated cation chann 29.0 1.2E+02 0.004 24.0 5.7 49 168-226 5-53 (74)
106 1nkp_B MAX protein, MYC proto- 28.9 1.2E+02 0.004 22.9 5.6 37 163-199 40-76 (83)
107 3t5v_A Nuclear mRNA export pro 28.4 66 0.0023 30.3 5.0 53 112-174 14-66 (316)
108 1vcs_A Vesicle transport throu 28.4 1.1E+02 0.0037 24.3 5.6 21 209-229 78-98 (102)
109 1m1j_B Fibrinogen beta chain; 27.9 2E+02 0.007 28.9 8.6 31 189-226 166-196 (464)
110 1jnm_A Proto-oncogene C-JUN; B 27.9 1.2E+02 0.0039 22.1 5.2 35 169-203 21-55 (62)
111 1gmj_A ATPase inhibitor; coile 27.5 1.5E+02 0.0052 23.8 6.2 33 29-65 37-69 (84)
112 2dq0_A Seryl-tRNA synthetase; 27.4 88 0.003 30.8 5.9 67 164-230 32-101 (455)
113 2efr_A General control protein 27.4 2.6E+02 0.009 24.3 8.2 83 133-222 44-129 (155)
114 1tu3_F RAB GTPase binding effe 27.3 43 0.0015 26.8 2.9 52 178-229 6-57 (79)
115 1m1j_B Fibrinogen beta chain; 27.1 3.4E+02 0.011 27.4 10.0 18 212-229 175-192 (464)
116 1uii_A Geminin; human, DNA rep 26.5 1.4E+02 0.0048 24.0 5.8 34 168-201 37-70 (83)
117 1t2k_D Cyclic-AMP-dependent tr 26.4 1.1E+02 0.0036 22.1 4.8 33 170-202 22-54 (61)
118 2e7s_A RAB guanine nucleotide 25.7 2.5E+02 0.0086 24.2 7.7 49 155-203 81-129 (135)
119 3m9b_A Proteasome-associated A 25.5 72 0.0025 30.0 4.6 25 203-227 73-97 (251)
120 3s4r_A Vimentin; alpha-helix, 25.4 2.5E+02 0.0085 22.1 8.6 38 189-226 54-91 (93)
121 1fio_A SSO1 protein; four heli 24.9 3E+02 0.01 22.8 14.5 27 135-161 88-114 (196)
122 2w6a_A ARF GTPase-activating p 24.5 1.7E+02 0.0057 22.6 5.6 33 166-205 23-55 (63)
123 1f5n_A Interferon-induced guan 24.5 5.7E+02 0.02 26.0 13.6 21 209-229 564-584 (592)
124 3swy_A Cyclic nucleotide-gated 24.5 1E+02 0.0035 22.2 4.3 42 169-220 4-45 (46)
125 1wle_A Seryl-tRNA synthetase; 24.2 3.7E+02 0.013 26.9 9.7 60 170-229 77-147 (501)
126 2wvr_A Geminin; DNA replicatio 24.1 1.8E+02 0.0063 26.8 6.9 39 168-206 106-144 (209)
127 3a5t_A Transcription factor MA 24.1 25 0.00085 29.2 1.1 53 174-226 41-93 (107)
128 2yko_A LINE-1 ORF1P; RNA-bindi 23.8 75 0.0026 29.6 4.4 49 163-211 6-54 (233)
129 1nkp_B MAX protein, MYC proto- 23.8 34 0.0011 25.9 1.7 13 209-221 65-77 (83)
130 4e61_A Protein BIM1; EB1-like 23.6 1.3E+02 0.0043 25.1 5.2 34 108-151 19-52 (106)
131 1gd2_E Transcription factor PA 23.6 1.2E+02 0.0039 23.3 4.7 17 209-225 54-70 (70)
132 2b5u_A Colicin E3; high resolu 23.2 6.5E+02 0.022 26.2 13.6 105 13-121 307-416 (551)
133 3lss_A Seryl-tRNA synthetase; 23.0 1.6E+02 0.0056 29.5 7.0 28 197-224 109-137 (484)
134 2ve7_C Kinetochore protein NUF 22.4 52 0.0018 30.1 3.0 46 165-210 143-188 (250)
135 2efr_A General control protein 22.4 3.8E+02 0.013 23.2 14.0 32 154-185 82-113 (155)
136 1ytz_I Troponin I; muscle, THI 22.2 1E+02 0.0035 27.8 4.8 61 178-241 56-116 (182)
137 2v4h_A NF-kappa-B essential mo 22.1 3.5E+02 0.012 22.7 9.9 40 144-187 68-107 (110)
138 3qh9_A Liprin-beta-2; coiled-c 21.8 2.9E+02 0.0099 22.2 6.8 20 182-201 59-78 (81)
139 1gmj_A ATPase inhibitor; coile 21.4 2.5E+02 0.0087 22.5 6.4 12 190-201 50-61 (84)
140 2dq3_A Seryl-tRNA synthetase; 21.2 1.2E+02 0.004 29.4 5.4 70 157-226 31-103 (425)
141 1t6f_A Geminin; coiled-coil, c 21.0 1.1E+02 0.0037 21.5 3.6 24 162-185 13-36 (37)
142 3efg_A Protein SLYX homolog; x 20.6 2.4E+02 0.0081 21.8 6.0 30 190-226 27-56 (78)
143 1lwu_B Fibrinogen beta chain; 20.4 1.1E+02 0.0037 29.3 4.8 18 209-226 39-56 (323)
144 1ykh_B RNA polymerase II holoe 20.3 2.1E+02 0.0071 23.9 6.0 54 170-223 71-124 (132)
145 2z5i_A TM, general control pro 20.0 2.5E+02 0.0086 20.2 5.8 40 177-223 5-44 (52)
No 1
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=96.78 E-value=0.12 Score=46.75 Aligned_cols=127 Identities=10% Similarity=0.097 Sum_probs=71.1
Q ss_pred hhHHHHHHHHHHHHhcCCCCCCcchhhHHhhhhhhhhhhhhhHhhhhhHHHhh---hhhHHHHHHHHHHHHHHHHHHHHH
Q 018386 106 DDQLADFMAWFDLLRQKPKDGEPKSIEVSAFLDERAFLWNQYKVMENDLTSKI---NSKRAEVDRANERIEKLLASTEQL 182 (357)
Q Consensus 106 eDeL~DFka~~~~L~~~lke~SeKdkEVsALlaEKdFVWNQ~k~ME~Dyt~lL---K~K~~EvaQAtE~iqKL~q~~EeL 182 (357)
+.++.++++.+......+..++ ..+|..||..|-++.=.....+|.+...+. ..++.+++.+.+.+..+...++.+
T Consensus 66 e~~i~~~~~ri~~~~~~l~~v~-~~kE~~aL~kEie~~~~~i~~lE~eile~~e~ie~~~~~l~~~~~~l~~~~~~l~~~ 144 (256)
T 3na7_A 66 EQTLQDTNAKIASIQKKMSEIK-SERELRSLNIEEDIAKERSNQANREIENLQNEIKRKSEKQEDLKKEMLELEKLALEL 144 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCS-SSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHccC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3677888888888877776554 789999999998888777777776654443 333455555555555555555444
Q ss_pred hhhhhhhhhHHHHHHHHHHhhhhcccchhhHH-HHHHHHHHHHHhh-cCCCCcccc
Q 018386 183 QLSNNEKDETIAKLKTQIAQMETGSKKWNTEI-SRLTQELELLRKS-RTASDTPVL 236 (357)
Q Consensus 183 Q~~nqeKDdeI~RLqak~aeMe~~~Kkk~eeI-s~L~~eLe~lrk~-r~a~~tpvl 236 (357)
+. +-|..+..+++++..+.....+.-..| ..|-..-+.+|+. .+--|-||-
T Consensus 145 ~~---~~~~~~~e~~~e~~~l~~~r~~l~~~i~~~lL~~Yerir~~~~g~avv~v~ 197 (256)
T 3na7_A 145 ES---LVENEVKNIKETQQIIFKKKEDLVEKTEPKIYSFYERIRRWAKNTSIVTIK 197 (256)
T ss_dssp HH---HHHHHHHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHGGGSEEECB
T ss_pred HH---HHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCceEEEee
Confidence 42 233444444444443222222222221 1344555666653 333345543
No 2
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=95.08 E-value=0.023 Score=44.74 Aligned_cols=49 Identities=27% Similarity=0.279 Sum_probs=42.9
Q ss_pred HHHHHhhhhhhhhhHHHHHHHHHHhhhhcccchhhHHHHHHHHHHHHHh
Q 018386 178 STEQLQLSNNEKDETIAKLKTQIAQMETGSKKWNTEISRLTQELELLRK 226 (357)
Q Consensus 178 ~~EeLQ~~nqeKDdeI~RLqak~aeMe~~~Kkk~eeIs~L~~eLe~lrk 226 (357)
++.+||..-++|+++|...++-+.+++....+++.+|..|..+|-.+|+
T Consensus 20 ti~eLq~~L~~K~eELr~kd~~I~eLEk~L~ekd~eI~~LqseLDKfrS 68 (72)
T 3nmd_A 20 SLRDLQYALQEKIEELRQRDALIDELELELDQKDELIQMLQNELDKYRS 68 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 4778888888999999998888999999889999999999999887754
No 3
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=94.51 E-value=0.098 Score=50.49 Aligned_cols=60 Identities=20% Similarity=0.200 Sum_probs=33.2
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHhhhhcccchhhHHHHHHHHHHHHH
Q 018386 166 DRANERIEKLLASTEQLQLSNNEKDETIAKLKTQIAQMETGSKKWNTEISRLTQELELLR 225 (357)
Q Consensus 166 aQAtE~iqKL~q~~EeLQ~~nqeKDdeI~RLqak~aeMe~~~Kkk~eeIs~L~~eLe~lr 225 (357)
.+..+.++++...++.++...+++.+++..++.++.+|+...++.++.+.+|.+|++.++
T Consensus 512 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~~~~~~~~~~~l~~e~~~~~ 571 (597)
T 3oja_B 512 THLKERQAFKLRETQARRTEADAKQKETEDLEQENIALEKQLDNKRAKQAELRQETSLKR 571 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhhhhhHHHHHHHHHhhhhhhcchhhHHhhhHHHHHHHhhhhhHHHHHHHHHHHHH
Confidence 333444455555555555555555555665666666566555555555555555555554
No 4
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=93.40 E-value=0.47 Score=36.62 Aligned_cols=73 Identities=18% Similarity=0.290 Sum_probs=66.6
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHhhhhcccchhhHHHHHHHHHHHHHhhcC
Q 018386 157 KINSKRAEVDRANERIEKLLASTEQLQLSNNEKDETIAKLKTQIAQMETGSKKWNTEISRLTQELELLRKSRT 229 (357)
Q Consensus 157 lLK~K~~EvaQAtE~iqKL~q~~EeLQ~~nqeKDdeI~RLqak~aeMe~~~Kkk~eeIs~L~~eLe~lrk~r~ 229 (357)
++..-+.+...|.+.+..+...++.....+....++|.-|+-++..+|.+..+..+........|+...+.+.
T Consensus 7 Km~~lk~e~d~a~~~~~~~e~~l~~~e~~~~~~E~ev~~L~kKiq~lE~eld~~ee~l~~a~~kLeeaek~~~ 79 (81)
T 1ic2_A 7 KMQMLKLDKENALDRAEQAEADKKAAEERSKQLEDELVALQKKLKGTEDELDKYSESLKDAQEKLELADKKAT 79 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4555677889999999999999999999999999999999999999999999999999999999999988765
No 5
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=92.60 E-value=5.3 Score=48.38 Aligned_cols=21 Identities=5% Similarity=0.417 Sum_probs=12.2
Q ss_pred hhcccchhhHHHHHHHHHHHH
Q 018386 204 ETGSKKWNTEISRLTQELELL 224 (357)
Q Consensus 204 e~~~Kkk~eeIs~L~~eLe~l 224 (357)
..+...|.+.+..|..++..|
T Consensus 2083 ~~Ek~RW~~~~~~l~~~~~~L 2103 (3245)
T 3vkg_A 2083 NSERGRWEQQSENFNTQMSTV 2103 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred hhccccHHHHHHHHHHHHHhc
Confidence 334445666666666666554
No 6
>1zxa_A CGMP-dependent protein kinase 1, alpha isozyme; parallel coiled coil dimer, transferase; NMR {Homo sapiens}
Probab=90.71 E-value=0.22 Score=38.63 Aligned_cols=45 Identities=20% Similarity=0.223 Sum_probs=32.4
Q ss_pred HHHHHhhhhhhhhhHHHHHHHHHHhhhhcccchhhHHHHHHHHHHHHHhhcC
Q 018386 178 STEQLQLSNNEKDETIAKLKTQIAQMETGSKKWNTEISRLTQELELLRKSRT 229 (357)
Q Consensus 178 ~~EeLQ~~nqeKDdeI~RLqak~aeMe~~~Kkk~eeIs~L~~eLe~lrk~r~ 229 (357)
.+|+++..-+.||..|..|+..+. .++++|..|..+|...++-=.
T Consensus 12 ~~e~~~~~i~~Kde~I~eLE~~L~-------~kd~eI~eLr~~LdK~qsVl~ 56 (67)
T 1zxa_A 12 LEEDFAKILMLKEERIKELEKRLS-------EKEEEIQELKRKLHKCQSVLP 56 (67)
T ss_dssp -----CHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHC----
T ss_pred HHHHHHHHHHccHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHhcc
Confidence 467888888999999999999987 899999999988877766433
No 7
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}
Probab=89.30 E-value=1.6 Score=34.92 Aligned_cols=73 Identities=19% Similarity=0.255 Sum_probs=62.9
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHhhhhcccchhhHHHHHHHHHHHHHhhcC
Q 018386 157 KINSKRAEVDRANERIEKLLASTEQLQLSNNEKDETIAKLKTQIAQMETGSKKWNTEISRLTQELELLRKSRT 229 (357)
Q Consensus 157 lLK~K~~EvaQAtE~iqKL~q~~EeLQ~~nqeKDdeI~RLqak~aeMe~~~Kkk~eeIs~L~~eLe~lrk~r~ 229 (357)
++...+.+...|.+.+..+.+.+..+...+.+++++|.-|+-++.-++....+..+........|+...+.++
T Consensus 10 Km~~lk~e~e~a~d~ae~~e~~~k~~e~~~~~~E~ei~sL~kKiq~lE~eld~~~e~l~~a~~kLe~~ek~~~ 82 (101)
T 3u59_A 10 KMQMLKLDKENAIDRAEQAEADKKQAEDRCKQLEEEQQGLQKKLKGTEDEVEKYSESVKEAQEKLEQAEKKAT 82 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555677888999999999999999998899999999999999998888888888888888888888877765
No 8
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=89.28 E-value=1.3 Score=35.43 Aligned_cols=59 Identities=25% Similarity=0.341 Sum_probs=42.8
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHhhhhhh--------------hhhHHHHHHHHHHhhhhcccchhhHHHHHHHHHH
Q 018386 157 KINSKRAEVDRANERIEKLLASTEQLQLSNNE--------------KDETIAKLKTQIAQMETGSKKWNTEISRLTQELE 222 (357)
Q Consensus 157 lLK~K~~EvaQAtE~iqKL~q~~EeLQ~~nqe--------------KDdeI~RLqak~aeMe~~~Kkk~eeIs~L~~eLe 222 (357)
+|..=+.-|.+|-+.|+-|+-.+++|...|.. .+.++.+|+.+.+ .|+++|..|-+.++
T Consensus 7 lleqLE~KIq~avdtI~lLqmEieELKekN~~L~~e~~e~~~~~~~L~~en~qLk~E~~-------~wq~Rl~~LLgk~e 79 (81)
T 2jee_A 7 VFEKLEAKVQQAIDTITLLQMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQN-------GWQERLQALLGRME 79 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH-------HHHHHHHHHHHhhh
Confidence 44455567888888888888888887655443 6667777777776 88888888877654
No 9
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=88.12 E-value=2 Score=34.49 Aligned_cols=73 Identities=15% Similarity=0.229 Sum_probs=60.9
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHhhhhcccchhhHHHHHHHHHHHHHhhcC
Q 018386 157 KINSKRAEVDRANERIEKLLASTEQLQLSNNEKDETIAKLKTQIAQMETGSKKWNTEISRLTQELELLRKSRT 229 (357)
Q Consensus 157 lLK~K~~EvaQAtE~iqKL~q~~EeLQ~~nqeKDdeI~RLqak~aeMe~~~Kkk~eeIs~L~~eLe~lrk~r~ 229 (357)
++..-+.+..-|.+.+..+...+..+...+.+++++|.-|+-++.-+|.+..+..+......+.|+...+.++
T Consensus 10 Km~~lk~e~e~a~drae~~e~~~k~~e~~~~~~E~Ei~sL~kk~~~lE~eld~~ee~L~ea~~kLee~ek~~~ 82 (101)
T 3u1c_A 10 KMQMLKLDKENALDRAEQAEADKKAAEERSKQLEDDIVQLEKQLRVTEDSRDQVLEELHKSEDSLLFAEENAA 82 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455567888899999999999999999999999999999999998888888888888888888877766554
No 10
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=87.97 E-value=31 Score=37.55 Aligned_cols=29 Identities=7% Similarity=0.240 Sum_probs=17.8
Q ss_pred HhhhhhHHHHHHHHHHHHHHHHHHHHHhh
Q 018386 156 SKINSKRAEVDRANERIEKLLASTEQLQL 184 (357)
Q Consensus 156 ~lLK~K~~EvaQAtE~iqKL~q~~EeLQ~ 184 (357)
..+++.+.|++...+.++++....+.|+.
T Consensus 984 ~~v~~L~~e~~~l~~~~~~~~ke~~~lee 1012 (1080)
T 2dfs_A 984 NRVLSLQEEIAKLRKELHQTQTEKKTIEE 1012 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556666666666666666666666643
No 11
>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A
Probab=87.91 E-value=9.9 Score=31.04 Aligned_cols=31 Identities=13% Similarity=0.141 Sum_probs=11.6
Q ss_pred HHHHHHHHHhhhhcccchhhHHHHHHHHHHH
Q 018386 193 IAKLKTQIAQMETGSKKWNTEISRLTQELEL 223 (357)
Q Consensus 193 I~RLqak~aeMe~~~Kkk~eeIs~L~~eLe~ 223 (357)
|..+...+...+........++..+...+..
T Consensus 211 ~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~ 241 (284)
T 1c1g_A 211 AEKYSQKEDKYEEEIKVLSDKLKEAETRAEF 241 (284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333444444444333
No 12
>1x79_B RAB GTPase binding effector protein 1; rabaptin5, GGA protein, GAT domain, intracellular trafficking, protein transport; 2.41A {Homo sapiens} SCOP: h.1.27.2
Probab=87.86 E-value=5.4 Score=33.53 Aligned_cols=74 Identities=24% Similarity=0.308 Sum_probs=53.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhHHHHHHhHHhHHHHHHHHHHHHHhhhhhhh
Q 018386 12 ERQKRDKILVKMLKSQQEQIETLVKEREILEDHLKMQHEKWVSDVRLYEDHISQMKSEIVAQELIHLLDAAKSDMVV 88 (357)
Q Consensus 12 ~r~~W~riLVkMLr~~q~QvEsL~~ER~~LEa~ik~QhE~W~sdv~~lqdrLsqm~~el~~eE~~~~~EaAk~~l~L 88 (357)
-|..|... -.|+++.+.|++.+.++|+.|++.++..-+--...|-.|.++++--.. .-.++++.+..++.++.-
T Consensus 4 t~~~~~~l-q~~~~ql~~qL~k~~~~r~~Le~~w~~k~E~~k~qV~~L~~~~q~sE~--~L~~Lqq~fsq~q~~vq~ 77 (112)
T 1x79_B 4 TRDQVKKL-QLMLRQANDQLEKTMKDKQELEDFIKQSSEDSSHQISALVLRAQASEI--LLEELQQGLSQAKRDVQE 77 (112)
T ss_dssp HHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHH
Confidence 36778775 457799999999999999999999877777666667777777665443 235666666666665543
No 13
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=87.42 E-value=3.5 Score=37.14 Aligned_cols=77 Identities=13% Similarity=0.202 Sum_probs=42.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHhhhhcccchhhHHHHHHHHHHHHHhhcCC---CCc-cccccc
Q 018386 164 EVDRANERIEKLLASTEQLQLSNNEKDETIAKLKTQIAQMETGSKKWNTEISRLTQELELLRKSRTA---SDT-PVLNRC 239 (357)
Q Consensus 164 EvaQAtE~iqKL~q~~EeLQ~~nqeKDdeI~RLqak~aeMe~~~Kkk~eeIs~L~~eLe~lrk~r~a---~~t-pvl~~c 239 (357)
+...+.+.|..+...++.++..-.+....+..+++++. ....+.+..+..+..+++.++..|.. .+- ++|..=
T Consensus 105 ~i~~lE~eile~~e~ie~~~~~l~~~~~~l~~~~~~l~---~~~~~~~~~~~e~~~e~~~l~~~r~~l~~~i~~~lL~~Y 181 (256)
T 3na7_A 105 RSNQANREIENLQNEIKRKSEKQEDLKKEMLELEKLAL---ELESLVENEVKNIKETQQIIFKKKEDLVEKTEPKIYSFY 181 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHH
Confidence 34444555555555555555444444455555555443 22345566777777777777766642 233 377666
Q ss_pred cccc
Q 018386 240 TRIA 243 (357)
Q Consensus 240 t~~~ 243 (357)
.+|.
T Consensus 182 erir 185 (256)
T 3na7_A 182 ERIR 185 (256)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 6643
No 14
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=86.69 E-value=7 Score=37.63 Aligned_cols=116 Identities=13% Similarity=0.112 Sum_probs=56.1
Q ss_pred HHHHHHHHHhhhchhHHHHHHHHHHHHhcCCCCCC-cchhhHHhhhhhhhhhhhhhHhhhhhHHH---hhhhhHHHHHHH
Q 018386 93 REASLLKLMLEYTDDQLADFMAWFDLLRQKPKDGE-PKSIEVSAFLDERAFLWNQYKVMENDLTS---KINSKRAEVDRA 168 (357)
Q Consensus 93 RE~~l~k~~lE~teDeL~DFka~~~~L~~~lke~S-eKdkEVsALlaEKdFVWNQ~k~ME~Dyt~---lLK~K~~EvaQA 168 (357)
.+...++......+..+...+..++...+.+...- +-......|-++ ++-++.++.. .+..-+.++.+=
T Consensus 463 ~~i~~l~~~~~~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~ 535 (597)
T 3oja_B 463 AEVQQLTNEQIQQEQLLQGLHAEIDTNLRRYRLPKDGLARSSDNLNKV-------FTHLKERQAFKLRETQARRTEADAK 535 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCSSSCHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcCccccccCCHHHHHHHH-------HHHHHhhhhhhHHHHHHHHHhhhhh
Confidence 44444444455555667777777777766655321 111111111111 1222222222 222222233333
Q ss_pred HHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHhhhhcccchhhHHHHHHHHHH
Q 018386 169 NERIEKLLASTEQLQLSNNEKDETIAKLKTQIAQMETGSKKWNTEISRLTQELE 222 (357)
Q Consensus 169 tE~iqKL~q~~EeLQ~~nqeKDdeI~RLqak~aeMe~~~Kkk~eeIs~L~~eLe 222 (357)
.+..+++.+.+++++..-++.-+.+.+|+.+++ .++.+|.+|.++++
T Consensus 536 ~~~~~~~~~~~~~le~~~~~~~~~~~~l~~e~~-------~~~~~~~~l~~~~~ 582 (597)
T 3oja_B 536 QKETEDLEQENIALEKQLDNKRAKQAELRQETS-------LKRQKVKQLEAKKN 582 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHTTC
T ss_pred hcchhhHHhhhHHHHHHHhhhhhHHHHHHHHHH-------HHHHHHHHHHHHhc
Confidence 345555556666666555555666666666655 56666666666554
No 15
>3iv1_A Tumor susceptibility gene 101 protein; coiled_COIL, tumorigenesis, CELL_cycle regulation, alternative splicing, cell cycle, cell division; HET: MSE; 2.50A {Homo sapiens}
Probab=83.58 E-value=5.7 Score=31.58 Aligned_cols=64 Identities=23% Similarity=0.404 Sum_probs=51.4
Q ss_pred Hhhhhh-HHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHhhhhcccchhhHHHHHHHHHHHHHh
Q 018386 156 SKINSK-RAEVDRANERIEKLLASTEQLQLSNNEKDETIAKLKTQIAQMETGSKKWNTEISRLTQELELLRK 226 (357)
Q Consensus 156 ~lLK~K-~~EvaQAtE~iqKL~q~~EeLQ~~nqeKDdeI~RLqak~aeMe~~~Kkk~eeIs~L~~eLe~lrk 226 (357)
++|+.+ +-.+.|+...++-|..+.++|-.-.++=++.|.||+.+-+ ..+.+|..|.+..+.|-+
T Consensus 10 DKLRrrl~E~~~q~qaEl~sLrrT~~EL~~G~~KL~~mi~~l~~E~~-------~l~~ni~~lk~K~~EL~~ 74 (78)
T 3iv1_A 10 DKLRWRMKEEMDRAQAELNALKRTEEDLKKGHQKLEEMVTRLDQEVA-------EVDKNIELLKKKDEELSS 74 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHH
Confidence 344433 3467899999999999999999888888889999988887 667788888888877754
No 16
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=82.38 E-value=2.9 Score=30.54 Aligned_cols=52 Identities=13% Similarity=0.229 Sum_probs=38.9
Q ss_pred HHHHHHHHhhhhhhhhhHHHHHHHHHHhhhhcccchhhHHHHHHHHHHHHHh
Q 018386 175 LLASTEQLQLSNNEKDETIAKLKTQIAQMETGSKKWNTEISRLTQELELLRK 226 (357)
Q Consensus 175 L~q~~EeLQ~~nqeKDdeI~RLqak~aeMe~~~Kkk~eeIs~L~~eLe~lrk 226 (357)
+..|-...+.+-+.|-..|..|+.++..++..-.....+|+.|..|+..|+.
T Consensus 6 ~erNr~AA~k~R~rKk~~~~~Le~~~~~L~~~n~~L~~~i~~L~~e~~~Lk~ 57 (61)
T 1t2k_D 6 LERNRAAASRSRQKRKVWVQSLEKKAEDLSSLNGQLQSEVTLLRNEVAQLKQ 57 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344445566667778888888888888888888888888888888887764
No 17
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=82.01 E-value=11 Score=40.91 Aligned_cols=15 Identities=27% Similarity=0.229 Sum_probs=8.1
Q ss_pred hHHHHHHHHHHHHHh
Q 018386 212 TEISRLTQELELLRK 226 (357)
Q Consensus 212 eeIs~L~~eLe~lrk 226 (357)
++--.|..|++.-|+
T Consensus 1063 ~~~~~~~~~~~~~~~ 1077 (1080)
T 2dfs_A 1063 EETKQLELDLNDERL 1077 (1080)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 444455556665554
No 18
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=81.56 E-value=2.9 Score=34.48 Aligned_cols=53 Identities=23% Similarity=0.342 Sum_probs=42.6
Q ss_pred HHHHHHHHHHhhhhhhhhhHHHHHHHHHHhhhhcccchhhHHHHHHHHHHHHH
Q 018386 173 EKLLASTEQLQLSNNEKDETIAKLKTQIAQMETGSKKWNTEISRLTQELELLR 225 (357)
Q Consensus 173 qKL~q~~EeLQ~~nqeKDdeI~RLqak~aeMe~~~Kkk~eeIs~L~~eLe~lr 225 (357)
.+|...+.+|++.....+.++.+|+.++.+-.........+...++.|||.|=
T Consensus 8 e~lre~l~~le~~~~~~~~e~~~L~~~l~eE~~~R~~aE~~~~~ie~ElEeLT 60 (97)
T 2eqb_B 8 NQLKEDYNTLKRELSDRDDEVKRLREDIAKENELRTKAEEEADKLNKEVEDLT 60 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566666777777779999999999999888888888888888888888773
No 19
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=81.45 E-value=1.6 Score=32.55 Aligned_cols=53 Identities=13% Similarity=0.218 Sum_probs=41.2
Q ss_pred HHHHHHHHHhhhhhhhhhHHHHHHHHHHhhhhcccchhhHHHHHHHHHHHHHh
Q 018386 174 KLLASTEQLQLSNNEKDETIAKLKTQIAQMETGSKKWNTEISRLTQELELLRK 226 (357)
Q Consensus 174 KL~q~~EeLQ~~nqeKDdeI~RLqak~aeMe~~~Kkk~eeIs~L~~eLe~lrk 226 (357)
|.+.|-......-++|-+++..|+.++.+++..-.....+|+.|+.|++.|+.
T Consensus 6 Kr~rNr~AA~R~R~KKk~~~~~le~~~~~L~~~N~~L~~~i~~L~~E~~~Lk~ 58 (63)
T 1ci6_A 6 KMEQNKTAATRYRQKKRAEQEALTGECKELEKKNEALKERADSLAKEIQYLKD 58 (63)
T ss_dssp --CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555666678888888888888888888888888999999999888874
No 20
>1t6f_A Geminin; coiled-coil, cell cycle; 1.47A {Synthetic} SCOP: h.1.28.1
Probab=81.38 E-value=2.2 Score=30.03 Aligned_cols=28 Identities=32% Similarity=0.437 Sum_probs=23.5
Q ss_pred HHHHHHHHhhhhhhhhhHHHHHHHHHHh
Q 018386 175 LLASTEQLQLSNNEKDETIAKLKTQIAQ 202 (357)
Q Consensus 175 L~q~~EeLQ~~nqeKDdeI~RLqak~ae 202 (357)
.++.+|+|+..-..||++|.+|+.+-.+
T Consensus 5 ~L~ENekLhk~ie~KdeeIa~Lk~eN~e 32 (37)
T 1t6f_A 5 ALKENEKLHKEIEQKDNEIARLKKENKE 32 (37)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHH
Confidence 5678899999999999999999887543
No 21
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=81.25 E-value=21 Score=29.39 Aligned_cols=83 Identities=14% Similarity=0.259 Sum_probs=57.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhHHHHHHhHHhHHHH--HHHHHHHHHhh--hhhhhchhhHHH
Q 018386 20 LVKMLKSQQEQIETLVKEREILEDHLKMQHEKWVSDVRLYEDHISQMKSEIVA--QELIHLLDAAK--SDMVVGLKLREA 95 (357)
Q Consensus 20 LVkMLr~~q~QvEsL~~ER~~LEa~ik~QhE~W~sdv~~lqdrLsqm~~el~~--eE~~~~~EaAk--~~l~LGlK~RE~ 95 (357)
|-..++.-+.++++|..-+..||..|.......-..+..+++.|..+..++.. .+|.+.+...+ +|+.+++ +-|+
T Consensus 43 lrr~iq~L~~el~~l~~~~~sLE~~l~e~e~~~~~~l~~~q~~i~~lE~eL~~~r~em~~ql~EYq~Ll~vKl~L-d~EI 121 (131)
T 3tnu_A 43 LRRTMQNLEIELQSQLSMKASLENSLEETKGRYCMQLAQIQEMIGSVEEQLAQLRCEMEQQNQEYKILLDVKTRL-EQEI 121 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHH
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHH
Confidence 45556888899999999999999999777666666777777777776665544 45555444333 2333444 3577
Q ss_pred HHHHHHhh
Q 018386 96 SLLKLMLE 103 (357)
Q Consensus 96 ~l~k~~lE 103 (357)
.-|.+|||
T Consensus 122 atYRkLLE 129 (131)
T 3tnu_A 122 ATYRRLLE 129 (131)
T ss_dssp HHHHHHTT
T ss_pred HHHHHhHC
Confidence 78888876
No 22
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=80.45 E-value=4 Score=30.21 Aligned_cols=52 Identities=23% Similarity=0.213 Sum_probs=37.3
Q ss_pred HHHHHHHHhhhhhhhhhHHHHHHHHHHhhhhcccchhhHHHHHHHHHHHHHh
Q 018386 175 LLASTEQLQLSNNEKDETIAKLKTQIAQMETGSKKWNTEISRLTQELELLRK 226 (357)
Q Consensus 175 L~q~~EeLQ~~nqeKDdeI~RLqak~aeMe~~~Kkk~eeIs~L~~eLe~lrk 226 (357)
+..|-...+..-+.|-+.|..|+.++..++..-.....+|+.|..++..|+.
T Consensus 7 rerNR~AA~rcR~rKk~~~~~Le~~v~~L~~~n~~L~~ei~~L~~e~~~Lk~ 58 (63)
T 2wt7_A 7 RERNKMAAAKCRNRRRELTDTLQAETDQLEDEKSALQTEIANLLKEKEKLEF 58 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555566667777777777777777777777777888888888777764
No 23
>3trt_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural protein; 2.30A {Homo sapiens} PDB: 3klt_A*
Probab=78.93 E-value=14 Score=27.54 Aligned_cols=45 Identities=16% Similarity=0.334 Sum_probs=36.1
Q ss_pred HHHHHHHHhhhhhhhhhHHHHHHHHHHhhhhcccchhhHHHHHHHHHHHHHh
Q 018386 175 LLASTEQLQLSNNEKDETIAKLKTQIAQMETGSKKWNTEISRLTQELELLRK 226 (357)
Q Consensus 175 L~q~~EeLQ~~nqeKDdeI~RLqak~aeMe~~~Kkk~eeIs~L~~eLe~lrk 226 (357)
.+..+++|+..+....+.+...+.++. +.+-.|+.|+-||+.||.
T Consensus 33 y~~k~eel~~~~~~~~~~l~~~k~Ei~-------elrr~iq~L~~el~slk~ 77 (77)
T 3trt_A 33 YKSKFADLSEAANRNNDALRQAKQEST-------EYRRQVQSLTMEVDALKG 77 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHH-------HHHHHHHHHHHHHHhhcC
Confidence 345577888888888888888888887 567789999999999874
No 24
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=78.32 E-value=27 Score=28.66 Aligned_cols=83 Identities=13% Similarity=0.254 Sum_probs=56.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhHHHHHHhHHhHHHH--HHHHHHHHHhh--hhhhhchhhHHH
Q 018386 20 LVKMLKSQQEQIETLVKEREILEDHLKMQHEKWVSDVRLYEDHISQMKSEIVA--QELIHLLDAAK--SDMVVGLKLREA 95 (357)
Q Consensus 20 LVkMLr~~q~QvEsL~~ER~~LEa~ik~QhE~W~sdv~~lqdrLsqm~~el~~--eE~~~~~EaAk--~~l~LGlK~RE~ 95 (357)
|-..+++-+.++++|-.-+..||..|..-....-..+..+++.|..+..++.. .+|.+.+...+ +|+.+++ +-|+
T Consensus 41 lrr~iq~L~~el~~l~~~~~~LE~~l~e~e~~~~~~l~~~q~~i~~lE~eL~~~r~e~~~ql~EYq~LlnvKl~L-d~EI 119 (129)
T 3tnu_B 41 MNRMIQRLRAEIDNVKKQCANLQNAIADAEQRGELALKDARNKLAELEEALQKAKQDMARLLREYQELMNTKLAL-DVEI 119 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHH
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH-HHHH
Confidence 45556888899999999999999999776666666777777777766655544 45554444333 2333333 3577
Q ss_pred HHHHHHhh
Q 018386 96 SLLKLMLE 103 (357)
Q Consensus 96 ~l~k~~lE 103 (357)
.-|.+|||
T Consensus 120 atYRkLLE 127 (129)
T 3tnu_B 120 ATYRKLLE 127 (129)
T ss_dssp HHHHHTTC
T ss_pred HHHHHhHC
Confidence 77888776
No 25
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=78.09 E-value=2.9 Score=30.76 Aligned_cols=50 Identities=16% Similarity=0.270 Sum_probs=37.4
Q ss_pred HHHHHHHhhhhhhhhhHHHHHHHHHHhhhhcccchhhHHHHHHHHHHHHH
Q 018386 176 LASTEQLQLSNNEKDETIAKLKTQIAQMETGSKKWNTEISRLTQELELLR 225 (357)
Q Consensus 176 ~q~~EeLQ~~nqeKDdeI~RLqak~aeMe~~~Kkk~eeIs~L~~eLe~lr 225 (357)
..|-...+.+-+.|-+.|..|+.++.+++..-..+..+|+.|..|+..|+
T Consensus 7 ~rNr~AA~k~R~rKk~~~~~Le~~v~~L~~~n~~L~~~v~~L~~e~~~Lk 56 (62)
T 1jnm_A 7 MRNRIAASKSRKRKLERIARLEEKVKTLKAQNSELASTANMLREQVAQLK 56 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555556667777888888888888888877788888888888877665
No 26
>2p2u_A HOST-nuclease inhibitor protein GAM, putative; structural genomics, unknown function, PSI-2, protein structure initiative; 2.75A {Desulfovibrio vulgaris} SCOP: h.4.18.1
Probab=78.07 E-value=4 Score=35.46 Aligned_cols=65 Identities=9% Similarity=0.083 Sum_probs=48.4
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHhhhhcccchhhHHHHHHHHHHHHHhhcCCCCcc
Q 018386 167 RANERIEKLLASTEQLQLSNNEKDETIAKLKTQIAQMETGSKKWNTEISRLTQELELLRKSRTASDTP 234 (357)
Q Consensus 167 QAtE~iqKL~q~~EeLQ~~nqeKDdeI~RLqak~aeMe~~~Kkk~eeIs~L~~eLe~lrk~r~a~~tp 234 (357)
+|+.++.++-....++......=+++|.+++...+ ...+..+++|+.|++.|+..+...-+.+||
T Consensus 17 ~~~~alr~ia~l~r~~~~i~~~~n~eI~~ik~~~~---~~~~~l~~~i~~l~~~l~~y~e~~r~elf~ 81 (171)
T 2p2u_A 17 QAEGALAEIATIDRKVGEIEAQMNEAIDAAKARAS---QKSAPLLARRKELEDGVATFATLNKTEMFK 81 (171)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHTHHHHCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHhHHHhcC
Confidence 34555555555555555555555789999988865 446688999999999999999999888888
No 27
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=77.55 E-value=9.6 Score=32.62 Aligned_cols=60 Identities=22% Similarity=0.359 Sum_probs=37.1
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHhhhhcccchhhHHHHHHHHHHHHHhh
Q 018386 158 INSKRAEVDRANERIEKLLASTEQLQLSNNEKDETIAKLKTQIAQMETGSKKWNTEISRLTQELELLRKS 227 (357)
Q Consensus 158 LK~K~~EvaQAtE~iqKL~q~~EeLQ~~nqeKDdeI~RLqak~aeMe~~~Kkk~eeIs~L~~eLe~lrk~ 227 (357)
|...+++++-.|.-.-.|..+++..++..++ .+..|+.++. .++..+...+.|+|.||+-
T Consensus 41 l~~~eaQAaTCNqTV~tL~~SL~~ekaq~q~---~vqeLqgEI~-------~Lnq~Lq~a~ae~erlr~~ 100 (121)
T 3mq7_A 41 FQDVEAQAATANHTVMALMASLDAEKAQGQK---KVEELEGEIT-------TLNHKLQDASAEVERLRRE 100 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHH-------HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHH-------HHHHHHHHHHHHHHHHHhh
Confidence 5666777777777777777777776655433 2444444443 5666666666666666654
No 28
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=77.52 E-value=4.3 Score=34.54 Aligned_cols=51 Identities=24% Similarity=0.307 Sum_probs=26.7
Q ss_pred HHHHHHHHHhhhhhhhhhHHHHHHHHHHhhhhcccchhhHHHHHHHHHHHH
Q 018386 174 KLLASTEQLQLSNNEKDETIAKLKTQIAQMETGSKKWNTEISRLTQELELL 224 (357)
Q Consensus 174 KL~q~~EeLQ~~nqeKDdeI~RLqak~aeMe~~~Kkk~eeIs~L~~eLe~l 224 (357)
+++...+.|+...++++.+|-.|+.++.....-..+...++.+|..++..|
T Consensus 72 k~~~~~~~L~~~l~~~~kE~~~lK~el~~~~~k~e~~~~e~~~l~~~~~~l 122 (138)
T 3hnw_A 72 KAKKMADSLSLDIENKDKEIYDLKHELIAAQIKAESSAKEIKELKSEINKY 122 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334445555555555666666666666544444444444444444444444
No 29
>4dvy_P Cytotoxicity-associated immunodominant antigen; oncoprotein; 3.30A {Helicobacter pylori} PDB: 4g0h_A
Probab=76.45 E-value=83 Score=33.41 Aligned_cols=189 Identities=23% Similarity=0.279 Sum_probs=99.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhHHHHHHhHHhHHHHHHHHHHH---------HHhhhhhhhchhhHH
Q 018386 24 LKSQQEQIETLVKEREILEDHLKMQHEKWVSDVRLYEDHISQMKSEIVAQELIHLL---------DAAKSDMVVGLKLRE 94 (357)
Q Consensus 24 Lr~~q~QvEsL~~ER~~LEa~ik~QhE~W~sdv~~lqdrLsqm~~el~~eE~~~~~---------EaAk~~l~LGlK~RE 94 (357)
++++|.++|.-++-|+|||.++.-..|..-...-..++.- |.+. +-++++.+. -+|....+-|++ +|
T Consensus 612 vkkaqkdlekslrkrehlekev~kkles~~~nkn~meaka-qans--qkd~ifalin~ea~kear~~a~~~nlkGI~-~E 687 (876)
T 4dvy_P 612 VKKAQKDLEKSLRKREHLEKEVEKKLESKSGNKNKMEAKA-QANS--QKDEIFALINKEANRDARAIAYTQNLKGIK-RE 687 (876)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHCC---CCSSHHH-HHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhccCchhhhhHhh-hhcc--ccchHHHHhhhhhhhHHHHHHhccchhhhh-HH
Confidence 5789999999999999999999776664433222222221 1121 112222221 122222233332 33
Q ss_pred HHHHHHHhhhchhHHHHHHHHHHHHhcC-CCCCCcchhhHHhhh-hhhhhhhhhhHhhhhhHHHhhhhhH----------
Q 018386 95 ASLLKLMLEYTDDQLADFMAWFDLLRQK-PKDGEPKSIEVSAFL-DERAFLWNQYKVMENDLTSKINSKR---------- 162 (357)
Q Consensus 95 ~~l~k~~lE~teDeL~DFka~~~~L~~~-lke~SeKdkEVsALl-aEKdFVWNQ~k~ME~Dyt~lLK~K~---------- 162 (357)
.+ -++|+---.|.||--.|+.++.- -++.|+...-.++|- ..||+--|| +..++|.+-.
T Consensus 688 ls---dKlENiNknLkDf~ksfde~KNGKNkDFSKv~etlk~L~~SvKDlgINq------Ev~dKIDNLNQAlsefKnGK 758 (876)
T 4dvy_P 688 LS---DKLEKISKDLKDFSKSFDEFKNGKNKDFSKAEETLKALKGSVKDLGINP------EWISKVENLNAALNEFKNGK 758 (876)
T ss_dssp HH---HHHHHHHHHHHHHHHHHHHCC----------CCHHHHHHHHHHHSTTCH------HHHHHHHHHHHHHHHTTC--
T ss_pred HH---HHHHHHHHHHHhhcccchhhhCCCcccHHHHHHHHHHHHhHHHHhccCH------HHHHHHHHHHHHHHHhcCCC
Confidence 32 35666667789998888887653 444666666666665 567777665 1122222111
Q ss_pred ----HHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHhhhhcccchhhHHHHHHHHHHHHHhhcCCCCcc
Q 018386 163 ----AEVDRANERIEKLLASTEQLQLSNNEKDETIAKLKTQIAQMETGSKKWNTEISRLTQELELLRKSRTASDTP 234 (357)
Q Consensus 163 ----~EvaQAtE~iqKL~q~~EeLQ~~nqeKDdeI~RLqak~aeMe~~~Kkk~eeIs~L~~eLe~lrk~r~a~~tp 234 (357)
..|.|| +.-|.-+...| +-+|+=.+.|.-|..-+.+- ++..--|+|++-|-.|+.|-.-++.-
T Consensus 759 ngDFSkVeQA---lsDLknSkkdL-srNQELtqKVdNLNQAVsEa-----K~tgdFSkVeQALadLKNssKdqi~q 825 (876)
T 4dvy_P 759 NKDFSKVTQA---KSDLENSVKDV-IINQKVTDKVDNLNQAVSVA-----KAMGDFSRVEQVLADLKNFSKEQLAQ 825 (876)
T ss_dssp ---CHHHHHH---HHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHH-----HHHCCTHHHHHHHHHHHHHHHHTTC-
T ss_pred ccCchhhhhh---hhHHHhhHHhh-hhhHHHHHHHHHHHHHHHHH-----HhcCchhHHHHHHHHHhhhhHHHHHh
Confidence 223343 44444333333 45667777788887665422 13356788888888887776544433
No 30
>1gk4_A Vimentin; intermediate filament, dimer, parallel coiled coil, heptad repeat, stutter; 2.3A {Homo sapiens} SCOP: h.1.20.1
Probab=75.43 E-value=21 Score=27.59 Aligned_cols=75 Identities=21% Similarity=0.346 Sum_probs=39.4
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhhhhhhhHHHHHHhHHhHHHH--HHHHHHHHHhh--hhhhhchhhHHHHHHHHHhhhc
Q 018386 30 QIETLVKEREILEDHLKMQHEKWVSDVRLYEDHISQMKSEIVA--QELIHLLDAAK--SDMVVGLKLREASLLKLMLEYT 105 (357)
Q Consensus 30 QvEsL~~ER~~LEa~ik~QhE~W~sdv~~lqdrLsqm~~el~~--eE~~~~~EaAk--~~l~LGlK~RE~~l~k~~lE~t 105 (357)
++++|-.-+.-||..|.....+.-.....+++.|.....++.. .++.+.+...+ +|+.+++ +-|+.-|.+++|--
T Consensus 2 el~~l~~~~~sLE~~l~e~e~~~~~~~~~~q~~i~~lE~eL~~~r~e~~~q~~EYq~LlnvK~~L-d~EIatYRkLLEGE 80 (84)
T 1gk4_A 2 EVDALKGTNESLERQMREMEENFAVEAANYQDTIGRLQDEIQNMKEEMARHLREYQDLLNVKMAL-DIEIATYRKLLEGE 80 (84)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHTC-
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-HHHHHHHHHHHcCC
Confidence 4556666666666666544444444455555555554444333 33433333222 2233333 46888999998843
No 31
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=75.29 E-value=7.4 Score=30.61 Aligned_cols=44 Identities=20% Similarity=0.324 Sum_probs=32.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHhhhh
Q 018386 162 RAEVDRANERIEKLLASTEQLQLSNNEKDETIAKLKTQIAQMET 205 (357)
Q Consensus 162 ~~EvaQAtE~iqKL~q~~EeLQ~~nqeKDdeI~RLqak~aeMe~ 205 (357)
+.......|.|+....-+++|+..-++||++|..|+.++.+..+
T Consensus 25 q~~L~~K~eELr~kd~~I~eLEk~L~ekd~eI~~LqseLDKfrS 68 (72)
T 3nmd_A 25 QYALQEKIEELRQRDALIDELELELDQKDELIQMLQNELDKYRS 68 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 34444455556666677888888889999999999999875543
No 32
>3htk_A Structural maintenance of chromosomes protein 5; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=74.54 E-value=4.9 Score=28.74 Aligned_cols=55 Identities=16% Similarity=0.152 Sum_probs=38.1
Q ss_pred HHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHhhhhcccchhhHHHHHHHHHHHH
Q 018386 170 ERIEKLLASTEQLQLSNNEKDETIAKLKTQIAQMETGSKKWNTEISRLTQELELL 224 (357)
Q Consensus 170 E~iqKL~q~~EeLQ~~nqeKDdeI~RLqak~aeMe~~~Kkk~eeIs~L~~eLe~l 224 (357)
+..+++...++.+......+..++..+++++-.+........++|.++...++.+
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~l~~~~~~I~~~k~qi~~y 59 (60)
T 3htk_A 5 NTKKTLENQVEELTEKCSLKTDEFLKAKEKINEIFEKLNTIRDEVIKKKNQNEYY 59 (60)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4566677777777666666777777777777777777777777777776666543
No 33
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=72.99 E-value=53 Score=29.56 Aligned_cols=48 Identities=23% Similarity=0.266 Sum_probs=12.3
Q ss_pred HHHHHhhhhhhhhhHHHHHHHHHHh---hhhcccchhhHHHHHHHHHHHHH
Q 018386 178 STEQLQLSNNEKDETIAKLKTQIAQ---METGSKKWNTEISRLTQELELLR 225 (357)
Q Consensus 178 ~~EeLQ~~nqeKDdeI~RLqak~ae---Me~~~Kkk~eeIs~L~~eLe~lr 225 (357)
+++.+++-.+.-=+.+.=|+.++.+ |....-..++|+.-|..||.-+-
T Consensus 131 SleD~e~kln~aiEr~alLE~El~EKe~l~~~~QRLkdE~rDLk~El~v~~ 181 (189)
T 2v71_A 131 SLEDFEQRLNQAIERNAFLESELDEKESLLVSVQRLKDEARDLRQELAVRE 181 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC------------------
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3344433333333444445555543 22333344556666666665443
No 34
>1x8y_A Lamin A/C; structural protein, intermediate filament protein; 2.20A {Homo sapiens} SCOP: h.1.20.1 PDB: 3v5b_A 3v4w_A 3v4q_A
Probab=67.83 E-value=20 Score=27.97 Aligned_cols=75 Identities=16% Similarity=0.159 Sum_probs=34.1
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhhhhhhhhHHHHHHhHHhHHHH--HHHHHHHHHhh--hhhhhchhhHHHHHHHHHhhh
Q 018386 29 EQIETLVKEREILEDHLKMQHEKWVSDVRLYEDHISQMKSEIVA--QELIHLLDAAK--SDMVVGLKLREASLLKLMLEY 104 (357)
Q Consensus 29 ~QvEsL~~ER~~LEa~ik~QhE~W~sdv~~lqdrLsqm~~el~~--eE~~~~~EaAk--~~l~LGlK~RE~~l~k~~lE~ 104 (357)
.++++|-.-+.-||..|.....+.......+++.|.....++.. .++.+.+...+ +|+.+++ +-|+..|.+++|-
T Consensus 3 ~eie~L~~q~~~Le~~l~e~E~~~~~~l~~~q~~i~~lE~el~~~r~e~~~ql~EYq~LlnvK~~L-e~EIatYRkLLEG 81 (86)
T 1x8y_A 3 CQLSQLQCQLAAKEAKLRDLEDSLARERDTSRRLLAEKEREMAEMRARMQQQLDEYQELLDIKLAL-DMEIHAYRKLLEG 81 (86)
T ss_dssp ---------CTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-HHHHHHHHHHHcC
Confidence 34555666666666666544444444455555555554444333 33433333222 2233333 4688888888874
No 35
>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=67.80 E-value=63 Score=28.30 Aligned_cols=54 Identities=17% Similarity=0.150 Sum_probs=42.5
Q ss_pred HHhhhhhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHhhhhccc
Q 018386 155 TSKINSKRAEVDRANERIEKLLASTEQLQLSNNEKDETIAKLKTQIAQMETGSK 208 (357)
Q Consensus 155 t~lLK~K~~EvaQAtE~iqKL~q~~EeLQ~~nqeKDdeI~RLqak~aeMe~~~K 208 (357)
++++-.-+.=|+.|.-.-..+...+++|+..-.+++..|..||..++.+....-
T Consensus 93 asLFeEAN~MVa~ar~~~~~~e~r~~~L~~ql~e~~~~l~~lq~ql~~LK~v~~ 146 (154)
T 2ocy_A 93 ASLFDEANNMVADARKEKYAIEILNKRLTEQLREKDTLLDTLTLQLKNLKKVMH 146 (154)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555555677788888889999999999999999999999999986654443
No 36
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=67.20 E-value=1.9e+02 Score=35.56 Aligned_cols=47 Identities=21% Similarity=0.319 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhHHHHHHhHHhHH
Q 018386 20 LVKMLKSQQEQIETLVKEREILEDHLKMQHEKWVSDVRLYEDHISQMKSEI 70 (357)
Q Consensus 20 LVkMLr~~q~QvEsL~~ER~~LEa~ik~QhE~W~sdv~~lqdrLsqm~~el 70 (357)
+.+||.+++.++++ .+.||+.=+.-.++- .+.|..++..|..+..++
T Consensus 1904 y~~ll~~K~~el~~---~~~rl~~GL~KL~et-~~~V~~l~~~L~~~~~~L 1950 (3245)
T 3vkg_A 1904 VVLLINEKRDQLEE---EQLHLNIGLKKLRDT-EAQVKDLQVSLAQKNREL 1950 (3245)
T ss_dssp HHHHHHHHHHHHHH---HHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH---HHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHH
Confidence 67778777766554 577887777655552 335666666665554433
No 37
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=66.69 E-value=27 Score=29.27 Aligned_cols=70 Identities=24% Similarity=0.378 Sum_probs=43.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHhhhhc-------ccchhhHHHHHHHHHHHHHhhcCCCC
Q 018386 160 SKRAEVDRANERIEKLLASTEQLQLSNNEKDETIAKLKTQIAQMETG-------SKKWNTEISRLTQELELLRKSRTASD 232 (357)
Q Consensus 160 ~K~~EvaQAtE~iqKL~q~~EeLQ~~nqeKDdeI~RLqak~aeMe~~-------~Kkk~eeIs~L~~eLe~lrk~r~a~~ 232 (357)
.++..+.+-.-.+.-|...++.+...++ ..|..|+..+.+|++. ..++..|-+.|..+++.++..+. .
T Consensus 12 ~rD~~Ie~Lkreie~lk~ele~l~~E~q---~~v~ql~~~i~~Le~eL~e~r~~~q~a~~e~e~Lr~e~~~l~~~~~--~ 86 (120)
T 3i00_A 12 EKDHLIERLYREISGLKAQLENMKTESQ---RVVLQLKGHVSELEADLAEQQHLRQQAADDCEFLRAELDELRRQRE--D 86 (120)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCC---
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--h
Confidence 3445566666666777777777754443 3445555555444444 44455678899999999988877 5
Q ss_pred cc
Q 018386 233 TP 234 (357)
Q Consensus 233 tp 234 (357)
||
T Consensus 87 ~~ 88 (120)
T 3i00_A 87 TE 88 (120)
T ss_dssp --
T ss_pred hH
Confidence 55
No 38
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=66.29 E-value=50 Score=27.02 Aligned_cols=37 Identities=14% Similarity=0.346 Sum_probs=19.0
Q ss_pred hHHHHHHHHHHhhhhcccchhhHHHHHHHHHHHHHhh
Q 018386 191 ETIAKLKTQIAQMETGSKKWNTEISRLTQELELLRKS 227 (357)
Q Consensus 191 deI~RLqak~aeMe~~~Kkk~eeIs~L~~eLe~lrk~ 227 (357)
++|..|+..+.+.-...-....+|+-|.+||..||+.
T Consensus 69 ~di~~lrK~lD~~~l~r~dLE~~iesL~eEl~FLKk~ 105 (119)
T 3ol1_A 69 NTLQSFRQDVDNASLARLDLERKVESLQEEIAFLKKL 105 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhhcccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455554443322222223445567777777777653
No 39
>2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin binding, masking, regulation, SELF-inhibition, cell A membrane protein; 2.10A {Spodoptera frugiperda} PDB: 2i1k_A 1e5w_A
Probab=66.05 E-value=6.9 Score=39.56 Aligned_cols=168 Identities=14% Similarity=0.245 Sum_probs=49.3
Q ss_pred HHHHHHHHhhhhhhhhhhhhHHHHHHhHHhHHHHHHHHHHHHHhhhhhhhchhhHHHHHHHHHhhhchhHHHHHHHHHHH
Q 018386 39 EILEDHLKMQHEKWVSDVRLYEDHISQMKSEIVAQELIHLLDAAKSDMVVGLKLREASLLKLMLEYTDDQLADFMAWFDL 118 (357)
Q Consensus 39 ~~LEa~ik~QhE~W~sdv~~lqdrLsqm~~el~~eE~~~~~EaAk~~l~LGlK~RE~~l~k~~lE~teDeL~DFka~~~~ 118 (357)
++|-..+.-+|.|.+.+-..----++||..+-+++..++..|-++ |..--+.||..- +.+.|+ +..|..|+..+..
T Consensus 278 k~i~~lc~~~H~ff~~~r~~d~~e~qqm~~~a~e~~~~~~~e~~~--l~~~~~~~~~~~-~~~~~~-~~~~~~~~~~~~~ 353 (575)
T 2i1j_A 278 KRILALCMGNHELYMRRRKPDTIDVQQMKAQAREEKLAKQAQREK--LQLEIAARERAE-KKQQEY-QDRLRQMQEEMER 353 (575)
T ss_dssp HHHHHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHTT--CCSCCCHHHHHH-HHHHHH-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHH-HhHHHH-HHHHHHHHHHHHH
Confidence 345556677888777665555556788998777888888888443 444444443220 111111 1234444444444
Q ss_pred HhcCCCCCCcchhhHHhhhhhhhhhhhhhHhhhhhHHHhhhhhHHHHHHHHHHHHH----HHHHHHHHhhhhhhhhhHHH
Q 018386 119 LRQKPKDGEPKSIEVSAFLDERAFLWNQYKVMENDLTSKINSKRAEVDRANERIEK----LLASTEQLQLSNNEKDETIA 194 (357)
Q Consensus 119 L~~~lke~SeKdkEVsALlaEKdFVWNQ~k~ME~Dyt~lLK~K~~EvaQAtE~iqK----L~q~~EeLQ~~nqeKDdeI~ 194 (357)
...+|.. ..|-..+|+|+ .+..|.. +.+|..+..|++++.+.+.. -..+-+.|.....++..+|.
T Consensus 354 ~~~~l~~----~~~~~~~l~e~------~~~~~~e-~~~l~~~~~~~e~~~~~l~~~~~~~~~e~~~l~~~~~~~~~~~~ 422 (575)
T 2i1j_A 354 SQANLLE----AQDMILRLEEQ------LRQLQAA-KEELEQRQNELQAMMQRLEETKNMEAAERQKLEDEIRAKQEEVS 422 (575)
T ss_dssp HHHHHHH----HHHC-----------------------------------------------------------------
T ss_pred HHHHHHH----hHHHHHHHHHH------HHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 4444432 22333344443 2333333 33777777777777665543 22334445555556666666
Q ss_pred HHHHHHHhhhhcccchhhHHHHHHHHH
Q 018386 195 KLKTQIAQMETGSKKWNTEISRLTQEL 221 (357)
Q Consensus 195 RLqak~aeMe~~~Kkk~eeIs~L~~eL 221 (357)
||..+...-+..+..|.++...-...+
T Consensus 423 ~~~~~~~~~~~e~~~~~~~~~~a~~~~ 449 (575)
T 2i1j_A 423 RIQQEVELKDSETRRLQEEVEDARRKQ 449 (575)
T ss_dssp -------------------CHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 766666655555555555544444443
No 40
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=61.53 E-value=50 Score=25.68 Aligned_cols=72 Identities=17% Similarity=0.241 Sum_probs=44.5
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHhhhh------------hhhhhHHHHHHHHHHhhhhcccchhhHHHHHHHHHHHH
Q 018386 157 KINSKRAEVDRANERIEKLLASTEQLQLSN------------NEKDETIAKLKTQIAQMETGSKKWNTEISRLTQELELL 224 (357)
Q Consensus 157 lLK~K~~EvaQAtE~iqKL~q~~EeLQ~~n------------qeKDdeI~RLqak~aeMe~~~Kkk~eeIs~L~~eLe~l 224 (357)
.|..-..........+..+...+..|...+ ....+.|...+.++.++........++|..|..+++.|
T Consensus 18 ~l~~L~~~~~~l~~~i~~l~~~l~~l~~~g~~CPvCgs~l~~~~~~~~i~~~~~~l~~l~~~i~~l~~~i~~l~~~~~~l 97 (112)
T 1l8d_A 18 ERNEITQRIGELKNKIGDLKTAIEELKKAKGKCPVCGRELTDEHREELLSKYHLDLNNSKNTLAKLIDRKSELERELRRI 97 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECTTTCCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333444455556666666666665311 12345677777777777777777778888888877777
Q ss_pred Hhhc
Q 018386 225 RKSR 228 (357)
Q Consensus 225 rk~r 228 (357)
+...
T Consensus 98 ~~~~ 101 (112)
T 1l8d_A 98 DMEI 101 (112)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 6543
No 41
>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=61.41 E-value=32 Score=30.20 Aligned_cols=48 Identities=23% Similarity=0.349 Sum_probs=35.9
Q ss_pred HHHHHHhhhhhhhhhHHHHHHHHHHhhhhcccchhhHHHHHHHHHHHH
Q 018386 177 ASTEQLQLSNNEKDETIAKLKTQIAQMETGSKKWNTEISRLTQELELL 224 (357)
Q Consensus 177 q~~EeLQ~~nqeKDdeI~RLqak~aeMe~~~Kkk~eeIs~L~~eLe~l 224 (357)
....+|.+.....+.++.+|+.++++-.........+..+++.|||.|
T Consensus 44 ~~~~~l~~~~~~~~~e~~~L~~~l~~E~~~R~~aE~~~~~ie~ElEeL 91 (154)
T 2ocy_A 44 EDYNTLKRELSDRDDEVKRLREDIAKENELRTKAEEEADKLNKEVEDL 91 (154)
T ss_dssp HHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555667889999999988877777777777778888888876
No 42
>2q6q_A Spindle POLE BODY component SPC42; SPC42P, budding yeast, cell cycle; 1.97A {Saccharomyces cerevisiae}
Probab=60.91 E-value=8 Score=30.61 Aligned_cols=52 Identities=17% Similarity=0.218 Sum_probs=28.4
Q ss_pred HHHHHHHhhhhhhhhhHHHHHHHHHHhhhhcccchhhHHHHHHHHHHHHHhh
Q 018386 176 LASTEQLQLSNNEKDETIAKLKTQIAQMETGSKKWNTEISRLTQELELLRKS 227 (357)
Q Consensus 176 ~q~~EeLQ~~nqeKDdeI~RLqak~aeMe~~~Kkk~eeIs~L~~eLe~lrk~ 227 (357)
.+.+-+|+....+|.+||.||+.=+-.+-+-.-+.-+=.-+|+++++..+-|
T Consensus 2 IkQNKeL~~kl~~Kq~EI~rLnvlvgslR~KLiKYtelnKKLe~~~~~~q~s 53 (74)
T 2q6q_A 2 VQQNKELNFKLREKQNEIFELKKIAETLRSKLEKYVDITKKLEDQNLNLQIK 53 (74)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 3445677777888999999885433322222223333344555555555443
No 43
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=60.76 E-value=33 Score=27.37 Aligned_cols=60 Identities=12% Similarity=0.235 Sum_probs=44.4
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHhhhhcccchhhHHHHHHHHHHHHH
Q 018386 166 DRANERIEKLLASTEQLQLSNNEKDETIAKLKTQIAQMETGSKKWNTEISRLTQELELLR 225 (357)
Q Consensus 166 aQAtE~iqKL~q~~EeLQ~~nqeKDdeI~RLqak~aeMe~~~Kkk~eeIs~L~~eLe~lr 225 (357)
.|--++|+.++.++..||....+=-++-..|..+..+.......++.++.+|.+|...-.
T Consensus 9 eqLE~KIq~avdtI~lLqmEieELKekN~~L~~e~~e~~~~~~~L~~en~qLk~E~~~wq 68 (81)
T 2jee_A 9 EKLEAKVQQAIDTITLLQMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQNGWQ 68 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHH
Confidence 455678888888888888877777777777777777666666667778888888776543
No 44
>1wlq_A Geminin; coiled-coil; 2.80A {Mus musculus} PDB: 2zxx_A*
Probab=59.93 E-value=19 Score=29.10 Aligned_cols=42 Identities=19% Similarity=0.318 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHhhhhc
Q 018386 165 VDRANERIEKLLASTEQLQLSNNEKDETIAKLKTQIAQMETG 206 (357)
Q Consensus 165 vaQAtE~iqKL~q~~EeLQ~~nqeKDdeI~RLqak~aeMe~~ 206 (357)
+++=.-+...-++.++.|+.....|+++|.+|+.+..++..+
T Consensus 26 AE~Rr~AL~eaL~EN~~Lh~~ie~~~eEi~~Lk~en~~L~el 67 (83)
T 1wlq_A 26 AEQRRKALYEALKENEKLHKEIEQKDSEIARLRKENKDLAEV 67 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455667778889999999999999999999887644443
No 45
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=59.65 E-value=19 Score=28.82 Aligned_cols=47 Identities=13% Similarity=0.261 Sum_probs=25.6
Q ss_pred hhhhhhhhhHHHHHHHHHHhhhhcccchhhHHHHHHHHHHHHHhhcC
Q 018386 183 QLSNNEKDETIAKLKTQIAQMETGSKKWNTEISRLTQELELLRKSRT 229 (357)
Q Consensus 183 Q~~nqeKDdeI~RLqak~aeMe~~~Kkk~eeIs~L~~eLe~lrk~r~ 229 (357)
+.+-+++-.....++.++.+++..-.....+|..|+.|++.||..-.
T Consensus 28 rrSR~krk~r~~e~~~r~~~Le~EN~~Lr~~v~~L~~E~~~Lr~ll~ 74 (87)
T 1hjb_A 28 RKSRDKAKMRNLETQHKVLELTAENERLQKKVEQLSRELSTLRNLFK 74 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333334444444444444556777778888887776544
No 46
>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}
Probab=59.44 E-value=21 Score=30.04 Aligned_cols=20 Identities=25% Similarity=0.340 Sum_probs=15.6
Q ss_pred ccchhhHHHHHHHHHHHHHh
Q 018386 207 SKKWNTEISRLTQELELLRK 226 (357)
Q Consensus 207 ~Kkk~eeIs~L~~eLe~lrk 226 (357)
..+..+|++.|..+|+.|..
T Consensus 85 REkl~~eKe~L~~ql~~Lq~ 104 (110)
T 2v4h_A 85 REKLVEKKEYLQEQLEQLQR 104 (110)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhHHHHHHHHHHHHHH
Confidence 44567889999999988764
No 47
>1lwu_C Fibrinogen gamma chain; heterotrimer, protein-peptide complex, blood clotting; HET: NDG MAN NAG BMA GAL; 2.80A {Petromyzon marinus} SCOP: d.171.1.1 h.1.8.1 PDB: 1n73_C*
Probab=59.35 E-value=3.8 Score=39.32 Aligned_cols=50 Identities=20% Similarity=0.262 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHhhhhcccchhhHHHHHHHHHHHH
Q 018386 168 ANERIEKLLASTEQLQLSNNEKDETIAKLKTQIAQMETGSKKWNTEISRLTQELELL 224 (357)
Q Consensus 168 AtE~iqKL~q~~EeLQ~~nqeKDdeI~RLqak~aeMe~~~Kkk~eeIs~L~~eLe~l 224 (357)
++++.++|+..+.+|+......+.+|..|+..+..+ +..|..|+..+..+
T Consensus 3 ~~~~~~~~~~~~~~~e~~i~~~~~~i~~L~~~l~~~-------~~~i~~l~~~i~~l 52 (323)
T 1lwu_C 3 GQKTVQKILEEVRILEQIGVSHDAQIQELSEMWRVN-------QQFVTRLQQQLVDI 52 (323)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHH
Confidence 455667777777777777666777777777777644 34455555444333
No 48
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=59.15 E-value=22 Score=36.92 Aligned_cols=81 Identities=11% Similarity=0.192 Sum_probs=42.1
Q ss_pred HHHHHHHHHHhcCCCCCCcchhhHHhhhh--------------hhhhhhhhhH-hhhhhHHHhhhhhHHHHHHHHHHHHH
Q 018386 110 ADFMAWFDLLRQKPKDGEPKSIEVSAFLD--------------ERAFLWNQYK-VMENDLTSKINSKRAEVDRANERIEK 174 (357)
Q Consensus 110 ~DFka~~~~L~~~lke~SeKdkEVsALla--------------EKdFVWNQ~k-~ME~Dyt~lLK~K~~EvaQAtE~iqK 174 (357)
.||...|..|+.+|.+.++..+++..+.. +.+=+-|||. .||.-+. -||. .++.
T Consensus 60 rDltkrINELKnqLEdlsKnsKdseqy~k~~~E~Lr~rq~q~~dNdNtynE~S~ELRRrIq-yLKe----------kVdn 128 (562)
T 3ghg_A 60 QDFTNRINKLKNSLFEYQKNNKDSHSLTTNIMEILRGDFSSANNRDNTYNRVSEDLRSRIE-VLKR----------KVIE 128 (562)
T ss_dssp HHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHTTSSHHHHHHHHHHHHHHTTHHHHHHHH-HHHH----------HHHH
T ss_pred CcHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHH-HHHH----------HHHH
Confidence 56666677777766665544444444322 2222445555 5555444 2332 3333
Q ss_pred HHHHHHHHhhhhhhhhhHHHHHHHHHH
Q 018386 175 LLASTEQLQLSNNEKDETIAKLKTQIA 201 (357)
Q Consensus 175 L~q~~EeLQ~~nqeKDdeI~RLqak~a 201 (357)
-++++..||....+=-.+|.||+..+.
T Consensus 129 QlsnIrvLQsnLedq~~kIQRLEvDId 155 (562)
T 3ghg_A 129 KVQHIQLLQKNVRAQLVDMKRLEVDID 155 (562)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334445555444444567888876654
No 49
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}
Probab=59.15 E-value=64 Score=25.46 Aligned_cols=89 Identities=11% Similarity=0.179 Sum_probs=62.0
Q ss_pred hHHhhhhhhhhhhhhhHhhhhhHHHhhhhhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHhhhhcccchh
Q 018386 132 EVSAFLDERAFLWNQYKVMENDLTSKINSKRAEVDRANERIEKLLASTEQLQLSNNEKDETIAKLKTQIAQMETGSKKWN 211 (357)
Q Consensus 132 EVsALlaEKdFVWNQ~k~ME~Dyt~lLK~K~~EvaQAtE~iqKL~q~~EeLQ~~nqeKDdeI~RLqak~aeMe~~~Kkk~ 211 (357)
-+.+|-.|++=.-.....+|.+ +|..+.+..++.+.+..|+..+..|+...+...+.+...+.++.+.+-...+..
T Consensus 10 Km~~lk~e~e~a~d~ae~~e~~----~k~~e~~~~~~E~ei~sL~kKiq~lE~eld~~~e~l~~a~~kLe~~ek~~~~AE 85 (101)
T 3u59_A 10 KMQMLKLDKENAIDRAEQAEAD----KKQAEDRCKQLEEEQQGLQKKLKGTEDEVEKYSESVKEAQEKLEQAEKKATDAE 85 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3566666777666666666654 455567778888888888888888877666666666677777766555555566
Q ss_pred hHHHHHHHHHHHH
Q 018386 212 TEISRLTQELELL 224 (357)
Q Consensus 212 eeIs~L~~eLe~l 224 (357)
.++.-|.+.+|++
T Consensus 86 ~evasLnRriqll 98 (101)
T 3u59_A 86 AEVASLNRRIQLV 98 (101)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 6777777777765
No 50
>4emc_A Monopolin complex subunit CSM1; RWD domain, kinetochore-binding, kinetoch replication-replication complex; 3.05A {Saccharomyces cerevisiae} PDB: 3n7n_A 3n4x_A
Probab=57.34 E-value=17 Score=33.06 Aligned_cols=61 Identities=20% Similarity=0.236 Sum_probs=41.8
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHhhhhcccchh-------hHHHHHHHHHHHHH
Q 018386 165 VDRANERIEKLLASTEQLQLSNNEKDETIAKLKTQIAQMETGSKKWN-------TEISRLTQELELLR 225 (357)
Q Consensus 165 vaQAtE~iqKL~q~~EeLQ~~nqeKDdeI~RLqak~aeMe~~~Kkk~-------eeIs~L~~eLe~lr 225 (357)
..+|-.-|++|+..+.-|-...+.|++||..|+.+++..+..++..+ +.|....+=++.|.
T Consensus 15 l~~ad~LV~~L~~En~~L~~ql~~k~~ei~~L~~ql~sl~~~~~~~~~~~~~~~e~i~i~~DL~e~LT 82 (190)
T 4emc_A 15 IDSADLLVANLVNENFVLSEKLDTKATEIKQLQKQIDSLNAQVKELKTQTSQQAENSEVIKDLYEYLC 82 (190)
T ss_dssp -----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHhhhHHHHHHHHcc
Confidence 44566678899999888887888999999999999887776665544 44555555555554
No 51
>2avr_X Adhesion A; antiparallel helix-loop-helix, leucine chain; HET: FLC; 1.90A {Fusobacterium nucleatum} PDB: 3etw_A 2gkq_A 2bc6_A 3etx_A 3ety_A 2gld_A 3etz_A 2gl2_A
Probab=56.64 E-value=72 Score=27.08 Aligned_cols=74 Identities=19% Similarity=0.298 Sum_probs=37.0
Q ss_pred hhhhhHhhhhhHHHhhhhhHH----HHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHH------HHhhhhcccchhh
Q 018386 143 LWNQYKVMENDLTSKINSKRA----EVDRANERIEKLLASTEQLQLSNNEKDETIAKLKTQ------IAQMETGSKKWNT 212 (357)
Q Consensus 143 VWNQ~k~ME~Dyt~lLK~K~~----EvaQAtE~iqKL~q~~EeLQ~~nqeKDdeI~RLqak------~aeMe~~~Kkk~e 212 (357)
|-+.|+.+|..|-.|.+.-+. |-+.|. .|++-+....+|+..- +..|.+|++- =.++..++|+-++
T Consensus 7 V~s~l~~LEaeyq~L~~kE~qrynqeka~AE-~A~~~L~~~~~m~~~i---~ek~~~i~~~~~~~~yK~eY~~L~KkYk~ 82 (119)
T 2avr_X 7 LVGELQALDAEYQNLANQEEARFNEERAQAD-AARQALAQNEQVYNEL---SQRAQRLQAEANTRFYKSQYQELASKYED 82 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHH---HHHHHHHHHHTTSCTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHH---HHHHHHHHHHhcccHHHHHHHHHHHHHHH
Confidence 668899999999966654332 223333 3333344444454333 3344444332 0134444444444
Q ss_pred HHHHHHHH
Q 018386 213 EISRLTQE 220 (357)
Q Consensus 213 eIs~L~~e 220 (357)
-...|..+
T Consensus 83 ~~~~Ld~e 90 (119)
T 2avr_X 83 ALKKLEAE 90 (119)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 44444444
No 52
>3etw_A Adhesin A; antiparallel helix-loop-helix, leucine chain, cell adhesin, cell adhesion; 2.00A {Fusobacterium nucleatum} PDB: 3ety_A 3etx_A 3etz_A 2gl2_A
Probab=54.61 E-value=97 Score=26.14 Aligned_cols=78 Identities=15% Similarity=0.225 Sum_probs=43.0
Q ss_pred hhhhhHhhhhhHHHhhhhhHH----HHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHH----------HHHHHhhhhccc
Q 018386 143 LWNQYKVMENDLTSKINSKRA----EVDRANERIEKLLASTEQLQLSNNEKDETIAKL----------KTQIAQMETGSK 208 (357)
Q Consensus 143 VWNQ~k~ME~Dyt~lLK~K~~----EvaQAtE~iqKL~q~~EeLQ~~nqeKDdeI~RL----------qak~aeMe~~~K 208 (357)
|=++|+-+|..|-.+.+.-+. |-+.|..+.+.|.+. .+|+...+++-+.|... +..+.+++...+
T Consensus 7 i~~~l~~Leae~q~L~~~E~qry~~eka~AE~A~~~La~~-~~l~~~i~er~~~i~~~~~~~~yk~~y~~l~k~Y~~~~k 85 (119)
T 3etw_A 7 LVGELQALDAEYQNLANQEEARFNEERAQADAARQALAQN-EQVYNELSQRAQRLQAEANTRFYKSQYQELASKYEDALK 85 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHTTSCTTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHH
Confidence 457889999999865544332 334444444444444 44443343333333322 223567777777
Q ss_pred chhhHHHHHHHHH
Q 018386 209 KWNTEISRLTQEL 221 (357)
Q Consensus 209 kk~eeIs~L~~eL 221 (357)
+.+++|-..+.-+
T Consensus 86 eLd~~ik~qekiI 98 (119)
T 3etw_A 86 KLEAEMEQQKAVI 98 (119)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 7777776666433
No 53
>1m1j_C Fibrinogen gamma chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_C
Probab=54.61 E-value=1.9 Score=42.60 Aligned_cols=51 Identities=16% Similarity=0.231 Sum_probs=36.1
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHhhhhcccchhhHHHHHHHHHHHHH
Q 018386 168 ANERIEKLLASTEQLQLSNNEKDETIAKLKTQIAQMETGSKKWNTEISRLTQELELLR 225 (357)
Q Consensus 168 AtE~iqKL~q~~EeLQ~~nqeKDdeI~RLqak~aeMe~~~Kkk~eeIs~L~~eLe~lr 225 (357)
++...++++..+..|+.........|..|+..+. ..+..|..|+..+..|.
T Consensus 82 ~tq~skkml~~~~~~e~~~~~~~~~i~~l~~~~~-------~~~~~i~~l~~~i~~l~ 132 (409)
T 1m1j_C 82 LTQKSKKIIEEIIRYENTILAHENTIQQLTDMHI-------MNSNKITQLKQKIAQLE 132 (409)
T ss_dssp HHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHH-------hhHHHHHHHHHHHHHHH
Confidence 3777788888888887777777777777777776 34566777776665554
No 54
>1m1j_C Fibrinogen gamma chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_C
Probab=54.13 E-value=55 Score=32.30 Aligned_cols=84 Identities=14% Similarity=0.129 Sum_probs=56.2
Q ss_pred hhhhhhhHhhhhhHHHhhhhhHHHHHHHHHHHHHHHHHHHHHhhh--hhhh------hhHHHHHHHHHHhhhhcccchhh
Q 018386 141 AFLWNQYKVMENDLTSKINSKRAEVDRANERIEKLLASTEQLQLS--NNEK------DETIAKLKTQIAQMETGSKKWNT 212 (357)
Q Consensus 141 dFVWNQ~k~ME~Dyt~lLK~K~~EvaQAtE~iqKL~q~~EeLQ~~--nqeK------DdeI~RLqak~aeMe~~~Kkk~e 212 (357)
||+=+|-+.+.+++..+ +.--.++++.++.+..|++.+...... .+.. ...+..+..++.++|+.......
T Consensus 27 d~L~k~e~~V~~~l~~L-E~~l~elsn~ts~v~~Lvk~iq~~~~~~Q~~~~d~~e~~tq~skkml~~~~~~e~~~~~~~~ 105 (409)
T 1m1j_C 27 DFFNKYRLTTDGELLEI-EGLLQQATNSTGSIEYLIQHIKTIYPSEKQTLPQSIEQLTQKSKKIIEEIIRYENTILAHEN 105 (409)
T ss_dssp HHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHSCSSTTCCSSCHHHHHHHHHHHHHHHHHTHHHHHHHHH
T ss_pred HHHHHHHhcchhHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhcccccCCCCCchhhHHHHHHHHHHHHHHHHHHhcchHH
Confidence 46666666677777643 555568999999999888887777321 1112 23445667777788888888888
Q ss_pred HHHHHHHHHHHHH
Q 018386 213 EISRLTQELELLR 225 (357)
Q Consensus 213 eIs~L~~eLe~lr 225 (357)
+|..|+..|..+.
T Consensus 106 ~i~~l~~~~~~~~ 118 (409)
T 1m1j_C 106 TIQQLTDMHIMNS 118 (409)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhH
Confidence 8888877665544
No 55
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=53.50 E-value=54 Score=32.70 Aligned_cols=81 Identities=12% Similarity=0.215 Sum_probs=38.9
Q ss_pred HHHHHHHHHHhcCCCCCC-------cchhhHHhhhh-------hhhhhhhhhH-hhhhhHHHhhhhhHHHHHHHHHHHHH
Q 018386 110 ADFMAWFDLLRQKPKDGE-------PKSIEVSAFLD-------ERAFLWNQYK-VMENDLTSKINSKRAEVDRANERIEK 174 (357)
Q Consensus 110 ~DFka~~~~L~~~lke~S-------eKdkEVsALla-------EKdFVWNQ~k-~ME~Dyt~lLK~K~~EvaQAtE~iqK 174 (357)
.||+..|+.|+..|...+ .--..++.+++ .++-+.|||. -||+-|. .||.+= ..|.
T Consensus 63 r~~~~rIe~L~~~L~~~s~s~~~~~~y~~~~~~~lk~~~~q~~dndn~~~e~s~eLe~~i~-~lk~~V--~~q~------ 133 (390)
T 1deq_A 63 QDFTSRINKLRDSLFNYQKNSKDSNTLTKNIVELMRGDFAKANNNDNTFKQINEDLRSRIE-ILRRKV--IEQV------ 133 (390)
T ss_pred hhHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHH-HHHHHH--HHHh------
Confidence 455555555555544432 22233333333 4455666664 3555554 333322 1222
Q ss_pred HHHHHHHHhhhhhhhhhHHHHHHHHHH
Q 018386 175 LLASTEQLQLSNNEKDETIAKLKTQIA 201 (357)
Q Consensus 175 L~q~~EeLQ~~nqeKDdeI~RLqak~a 201 (357)
+++..||....+=-.+|.||+.++.
T Consensus 134 --~~ir~Lq~~l~~q~~kiqRLE~~Id 158 (390)
T 1deq_A 134 --QRINLLQKNVRDQLVDMKRLEVDID 158 (390)
T ss_pred --HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2444444444444567778877753
No 56
>3vmx_A Voltage-gated hydrogen channel 1; coiled-coil, ION channel, ION transport, membrane protein; 1.45A {Mus musculus}
Probab=53.15 E-value=17 Score=26.82 Aligned_cols=30 Identities=23% Similarity=0.382 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHhhhhhhhhhHHHHHHHHHH
Q 018386 172 IEKLLASTEQLQLSNNEKDETIAKLKTQIA 201 (357)
Q Consensus 172 iqKL~q~~EeLQ~~nqeKDdeI~RLqak~a 201 (357)
-..|.+.+.+||-...+++-||.||++=+.
T Consensus 13 n~~L~~kv~~Le~~c~~~eQEieRL~~LLk 42 (48)
T 3vmx_A 13 NIQLATKIQHLEFSCSEKEQEIERLNKLLK 42 (48)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHccHHHHHHHHHHHHHH
Confidence 356778888999999999999999987664
No 57
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=52.38 E-value=62 Score=30.60 Aligned_cols=13 Identities=8% Similarity=-0.337 Sum_probs=6.7
Q ss_pred HHHHHHHHHHHhc
Q 018386 109 LADFMAWFDLLRQ 121 (357)
Q Consensus 109 L~DFka~~~~L~~ 121 (357)
-..|.+++..|..
T Consensus 323 ~~eF~~Eve~L~~ 335 (487)
T 3oja_A 323 SETERLECERENQ 335 (487)
T ss_dssp --CHHHHHHHHHH
T ss_pred HHHHHHHHHHHhc
Confidence 3456666665554
No 58
>3mov_A Lamin-B1; LMNB1, B-type lamins, intermediate filament (IF), nucleus, coiled coil, structural genomics consortium, SGC, structural protein; 2.40A {Homo sapiens} PDB: 3tyy_A
Probab=52.38 E-value=38 Score=27.16 Aligned_cols=78 Identities=14% Similarity=0.122 Sum_probs=39.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhHHHHHHhHHhHHHH--HHHHHHHHHhh--hhhhhchhhHHHHHHHHH
Q 018386 26 SQQEQIETLVKEREILEDHLKMQHEKWVSDVRLYEDHISQMKSEIVA--QELIHLLDAAK--SDMVVGLKLREASLLKLM 101 (357)
Q Consensus 26 ~~q~QvEsL~~ER~~LEa~ik~QhE~W~sdv~~lqdrLsqm~~el~~--eE~~~~~EaAk--~~l~LGlK~RE~~l~k~~ 101 (357)
+...|+.+|=....-||..|.............+++.|.....++.. .++.+.+...+ +|+.+++ +-|+.-|..+
T Consensus 9 ~~~~~~~~Lq~~~~~LE~~l~e~E~~~~~e~~~~q~~i~~lE~eL~~~r~e~~~ql~EYq~LlnvKl~L-e~EIatYrkL 87 (95)
T 3mov_A 9 SRENLYFQGQKESRACLERIQELEDLLAKEKDNSRRMLTDKEREMAEIRDQMQQQLNDYEQLLDVKLAL-DMEISAYRKL 87 (95)
T ss_dssp ---------CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHH
T ss_pred cHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHH
Confidence 34566777777777777777666665555666666666665544433 34444333322 2333333 2577778888
Q ss_pred hhh
Q 018386 102 LEY 104 (357)
Q Consensus 102 lE~ 104 (357)
+|-
T Consensus 88 LEG 90 (95)
T 3mov_A 88 LEG 90 (95)
T ss_dssp HCC
T ss_pred Hcc
Confidence 764
No 59
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=51.57 E-value=1.1e+02 Score=31.34 Aligned_cols=67 Identities=15% Similarity=0.347 Sum_probs=42.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhHHHHHHhHHhHHHHHHHHHHHHHhhhhhhhchhhHH
Q 018386 27 QQEQIETLVKEREILEDHLKMQHEKWVSDVRLYEDHISQMKSEIVAQELIHLLDAAKSDMVVGLKLRE 94 (357)
Q Consensus 27 ~q~QvEsL~~ER~~LEa~ik~QhE~W~sdv~~lqdrLsqm~~el~~eE~~~~~EaAk~~l~LGlK~RE 94 (357)
.+++.|..=++...|+...+-+........+.||.++.||...+ .+|..+.+...+..+-..+|+.+
T Consensus 492 ~~~~~e~~~~~~~~l~~~~~~~~~~~~~~~~~~~e~~~ql~~km-e~~~~~~~~e~~~~~~~~~~~~~ 558 (592)
T 1f5n_A 492 ERVKAESAQASAKMLHEMQRKNEQMMEQKERSYQEHLKQLTEKM-ENDRVQLLKEQERTLALKLQEQE 558 (592)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555556666677777777777778888999999999977533 34445555544444444444433
No 60
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=51.34 E-value=60 Score=27.45 Aligned_cols=35 Identities=26% Similarity=0.260 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHH
Q 018386 164 EVDRANERIEKLLASTEQLQLSNNEKDETIAKLKT 198 (357)
Q Consensus 164 EvaQAtE~iqKL~q~~EeLQ~~nqeKDdeI~RLqa 198 (357)
+...+.+++..+.+.+++|+..+++=..+|.+|++
T Consensus 97 el~~~~~k~e~~~~e~~~l~~~~~~l~~~~~~le~ 131 (138)
T 3hnw_A 97 ELIAAQIKAESSAKEIKELKSEINKYQKNIVKLET 131 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444333333333334433
No 61
>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A
Probab=51.18 E-value=68 Score=24.82 Aligned_cols=39 Identities=26% Similarity=0.408 Sum_probs=26.7
Q ss_pred hhhhHHHHHHHHHHhhhhcccchhhHHHHHHHHHHHHHh
Q 018386 188 EKDETIAKLKTQIAQMETGSKKWNTEISRLTQELELLRK 226 (357)
Q Consensus 188 eKDdeI~RLqak~aeMe~~~Kkk~eeIs~L~~eLe~lrk 226 (357)
.+++-+..|......++...+.....+..+..+++.++.
T Consensus 67 ~~~ea~~~L~~~~e~ie~~i~~le~~~~~l~~~l~~lk~ 105 (117)
T 2zqm_A 67 TKDKAVAELKEKIETLEVRLNALERQEKKLNEKLKELTA 105 (117)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567777777777777766666666666666666666553
No 62
>3a7o_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.50A {Saccharomyces cerevisiae}
Probab=51.18 E-value=33 Score=27.22 Aligned_cols=37 Identities=27% Similarity=0.362 Sum_probs=23.8
Q ss_pred HHHHHhhhhhhhhhHHHHHHHHHHhhhhcccchhhHH
Q 018386 178 STEQLQLSNNEKDETIAKLKTQIAQMETGSKKWNTEI 214 (357)
Q Consensus 178 ~~EeLQ~~nqeKDdeI~RLqak~aeMe~~~Kkk~eeI 214 (357)
.+-.||..-..||.+|.+|++-++=---++...++||
T Consensus 19 ~l~~Lr~eL~~Ke~eI~~L~e~i~lk~kd~ErLNDEi 55 (75)
T 3a7o_A 19 TLAILQKELKSKEQEIRRLKEVIALKNKNTERLNDEL 55 (75)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHhhHHH
Confidence 4555677777899999999998873333333334443
No 63
>3ghg_C Fibrinogen gamma chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 1deq_C
Probab=51.07 E-value=79 Score=31.46 Aligned_cols=57 Identities=21% Similarity=0.220 Sum_probs=35.2
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHhhhhcccchhhHHHHHHHHHHHHHhhcC
Q 018386 166 DRANERIEKLLASTEQLQLSNNEKDETIAKLKTQIAQMETGSKKWNTEISRLTQELELLRKSRT 229 (357)
Q Consensus 166 aQAtE~iqKL~q~~EeLQ~~nqeKDdeI~RLqak~aeMe~~~Kkk~eeIs~L~~eLe~lrk~r~ 229 (357)
..+|+.-+|.+..++.++......+..|.-|+..+ ...+..|..|+..+..|...-.
T Consensus 80 ~~~~q~Skkml~~~~~~~~~~~~~~~~i~~l~~~~-------~~~~~~i~~L~~~v~~l~~~~~ 136 (411)
T 3ghg_C 80 DAATLKSRKMLEEIMKYEASILTHDSSIRYLQEIY-------NSNNQKIVNLKEKVAQLEAQCQ 136 (411)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHTTSC
T ss_pred hhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHhc
Confidence 44555555566666666555555555555555543 3556788888888887766433
No 64
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=51.01 E-value=92 Score=24.78 Aligned_cols=89 Identities=13% Similarity=0.178 Sum_probs=51.9
Q ss_pred hHHhhhhhhhhhhhhhHhhhhhHHHhhhhhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHhhhhcccchh
Q 018386 132 EVSAFLDERAFLWNQYKVMENDLTSKINSKRAEVDRANERIEKLLASTEQLQLSNNEKDETIAKLKTQIAQMETGSKKWN 211 (357)
Q Consensus 132 EVsALlaEKdFVWNQ~k~ME~Dyt~lLK~K~~EvaQAtE~iqKL~q~~EeLQ~~nqeKDdeI~RLqak~aeMe~~~Kkk~ 211 (357)
-+.+|-.+++=.-..+..+|.+ +|..+.+..++-+.+..|+..+..|+...+.-.+.+...+.++.+-+-...+..
T Consensus 10 Km~~lk~e~e~a~drae~~e~~----~k~~e~~~~~~E~Ei~sL~kk~~~lE~eld~~ee~L~ea~~kLee~ek~~~~aE 85 (101)
T 3u1c_A 10 KMQMLKLDKENALDRAEQAEAD----KKAAEERSKQLEDDIVQLEKQLRVTEDSRDQVLEELHKSEDSLLFAEENAAKAE 85 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455666666665555555543 445566677777777777777777765444444444444555544444444444
Q ss_pred hHHHHHHHHHHHH
Q 018386 212 TEISRLTQELELL 224 (357)
Q Consensus 212 eeIs~L~~eLe~l 224 (357)
.++.-|.+.+|+|
T Consensus 86 ~ev~~L~Rriqll 98 (101)
T 3u1c_A 86 SEVASLNRRIQLV 98 (101)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 5666677666654
No 65
>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D
Probab=50.77 E-value=19 Score=26.80 Aligned_cols=46 Identities=20% Similarity=0.299 Sum_probs=29.6
Q ss_pred HHHHHHHHHhhhhhhhhhHHHHHHHHHHhhhhcccchhhHHHHHHH
Q 018386 174 KLLASTEQLQLSNNEKDETIAKLKTQIAQMETGSKKWNTEISRLTQ 219 (357)
Q Consensus 174 KL~q~~EeLQ~~nqeKDdeI~RLqak~aeMe~~~Kkk~eeIs~L~~ 219 (357)
|-..|.+....+-+.|-+.|..|+.++.+++..-..+..+|..|..
T Consensus 13 KR~rNreAArrsR~RK~~~~~~Le~~v~~L~~eN~~L~~ev~~Lr~ 58 (63)
T 2dgc_A 13 KRARNTEAARRSRARKLQRMKQLEDKVEELLSKNYHLENEVARLKK 58 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344777777778888888888888888665444444444444433
No 66
>1gu4_A CAAT/enhancer binding protein beta; transcription/DNA, protein-DNA complex, transcription factor, BZIP, C/EBP; 1.80A {Homo sapiens} SCOP: h.1.3.1 PDB: 1gtw_A 1gu5_A 1h88_A 1h8a_A 1io4_A 2e43_A* 2e42_A* 1h89_A 1ci6_B 1nwq_A
Probab=49.83 E-value=52 Score=25.72 Aligned_cols=53 Identities=11% Similarity=0.218 Sum_probs=31.2
Q ss_pred HHHHHHHHhhhhhhhhhHHHHHHHHHHhhhhcccchhhHHHHHHHHHHHHHhh
Q 018386 175 LLASTEQLQLSNNEKDETIAKLKTQIAQMETGSKKWNTEISRLTQELELLRKS 227 (357)
Q Consensus 175 L~q~~EeLQ~~nqeKDdeI~RLqak~aeMe~~~Kkk~eeIs~L~~eLe~lrk~ 227 (357)
-..|++..+.+-+++-.....++.++.+++..-.....+|+.|+.|+..||..
T Consensus 20 R~rNN~AakrSR~krk~r~~e~~~r~~~L~~eN~~L~~~v~~L~~E~~~Lr~l 72 (78)
T 1gu4_A 20 RERNNIAVRKSRDKAKMRNLETQHKVLELTAENERLQKKVEQLSRELSTLRNL 72 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444555555555555556677778888888888754
No 67
>3hhm_B NISH2 P85alpha; PI3KCA, PI3K, PIK3R1, phosphatidilynositol 3,4,5- triphosphate, wortmannin, H1047R, ATP-binding, disease mutation, kinase; HET: KWT; 2.80A {Homo sapiens} PDB: 3hiz_B 2rd0_B 4a55_B* 3mtt_A
Probab=48.32 E-value=25 Score=34.06 Aligned_cols=83 Identities=16% Similarity=0.275 Sum_probs=47.6
Q ss_pred hhhhHhhhh---hHHHhhhhhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHhhhhcccchhhHHHHHHHH
Q 018386 144 WNQYKVMEN---DLTSKINSKRAEVDRANERIEKLLASTEQLQLSNNEKDETIAKLKTQIAQMETGSKKWNTEISRLTQE 220 (357)
Q Consensus 144 WNQ~k~ME~---Dyt~lLK~K~~EvaQAtE~iqKL~q~~EeLQ~~nqeKDdeI~RLqak~aeMe~~~Kkk~eeIs~L~~e 220 (357)
=.|.++.|+ ||.+.... |+ ....++.++.|.+.|++--++=-+.-.+|+..|..-...-.+.+.+|..|.-+
T Consensus 174 ~~q~~~~e~~~~~~~~~~~~---~~--~~~e~~~~~~n~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~lkp~ 248 (373)
T 3hhm_B 174 EEQCQTQERYSKEYIEKFKR---EG--NEKEIQRIMHNYDKLKSRISEIIDSRRRLEEDLKKQAAEYREIDKRMNSIKPD 248 (373)
T ss_dssp HHHHHHHHHHHHHHHHHHTT---TT--CCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhhhhhhh---hc--ChHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccChH
Confidence 356666664 66655432 11 11244566667776665444323333344444443333444678889999999
Q ss_pred HHHHHhhcCCC
Q 018386 221 LELLRKSRTAS 231 (357)
Q Consensus 221 Le~lrk~r~a~ 231 (357)
|-.|||.|..-
T Consensus 249 l~ql~k~rd~~ 259 (373)
T 3hhm_B 249 LIQLRKTRDQY 259 (373)
T ss_dssp HHHHHHHHTC-
T ss_pred HHHHHHHHHHH
Confidence 99999988754
No 68
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=46.80 E-value=1.6e+02 Score=26.24 Aligned_cols=40 Identities=25% Similarity=0.317 Sum_probs=24.2
Q ss_pred hhhhHhhhhhHHHhhhhhHHHHHHHHHHHHHHHHHHHHHh
Q 018386 144 WNQYKVMENDLTSKINSKRAEVDRANERIEKLLASTEQLQ 183 (357)
Q Consensus 144 WNQ~k~ME~Dyt~lLK~K~~EvaQAtE~iqKL~q~~EeLQ 183 (357)
|+|-.-+=.|+-+.+..-..|+++-.+...++...+..||
T Consensus 85 r~q~se~~~elq~ri~~L~~El~~~k~~~~k~~~e~r~L~ 124 (168)
T 3o0z_A 85 RGHDSEMIGDLQARITSLQEEVKHLKHNLEKVEGERKEAQ 124 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555555556666666666666666666666666655555
No 69
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=44.87 E-value=16 Score=28.20 Aligned_cols=39 Identities=21% Similarity=0.307 Sum_probs=21.6
Q ss_pred hhhhhhHHHHHHHHHHhhhhcccchhhHHHHHHHHHHHH
Q 018386 186 NNEKDETIAKLKTQIAQMETGSKKWNTEISRLTQELELL 224 (357)
Q Consensus 186 nqeKDdeI~RLqak~aeMe~~~Kkk~eeIs~L~~eLe~l 224 (357)
-+-|..-|..|+.++.+++........|+..|...++.|
T Consensus 24 ReRK~~~i~~LE~~v~~le~~~~~l~~en~~Lr~~i~~L 62 (70)
T 1gd2_E 24 RKRKEDHLKALETQVVTLKELHSSTTLENDQLRQKVRQL 62 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455566666666666666555544445555555444444
No 70
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=44.53 E-value=28 Score=33.67 Aligned_cols=49 Identities=20% Similarity=0.122 Sum_probs=23.8
Q ss_pred HHHHHhhhhhhhhhHHHHHHHHHHhhhhcccchhhHHHHHHHHHHHHHh
Q 018386 178 STEQLQLSNNEKDETIAKLKTQIAQMETGSKKWNTEISRLTQELELLRK 226 (357)
Q Consensus 178 ~~EeLQ~~nqeKDdeI~RLqak~aeMe~~~Kkk~eeIs~L~~eLe~lrk 226 (357)
.++.|+....+.+.+|..++.++.++.....+....--+|-.+++.|+-
T Consensus 11 ~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~rr~l~n~~~elkg 59 (403)
T 4etp_A 11 KIAALKEKIAALKEKIKDTELGMKELNEILIKEETVRRTLHNELQELRG 59 (403)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 3333333333334444444444444444444444555566666676653
No 71
>3bas_A Myosin heavy chain, striated muscle/general control protein GCN4 chimera; alpha-helical coiled coil, disorder, salt links; 2.30A {Argopecten irradians} SCOP: h.1.26.1 PDB: 1nkn_A 3bat_A
Probab=44.05 E-value=1.1e+02 Score=23.76 Aligned_cols=24 Identities=17% Similarity=0.299 Sum_probs=10.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHh
Q 018386 160 SKRAEVDRANERIEKLLASTEQLQ 183 (357)
Q Consensus 160 ~K~~EvaQAtE~iqKL~q~~EeLQ 183 (357)
.++.+..++.+.+++......+|+
T Consensus 18 ~~eeel~~lke~l~k~e~~rkele 41 (89)
T 3bas_A 18 EQLKQMDKMKEDLAKTERIKKELE 41 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444443
No 72
>2zxx_A Geminin; coiled-coil, cell cycle, coiled coil, DNA replication inhibitor, phosphoprotein, DNA-binding, nucleus, proto-oncogene; HET: DNA; 2.80A {Mus musculus}
Probab=43.82 E-value=44 Score=26.60 Aligned_cols=34 Identities=24% Similarity=0.420 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHH
Q 018386 166 DRANERIEKLLASTEQLQLSNNEKDETIAKLKTQ 199 (357)
Q Consensus 166 aQAtE~iqKL~q~~EeLQ~~nqeKDdeI~RLqak 199 (357)
++=.-+...-++.++.|+.....|+++|.+|+.+
T Consensus 23 E~RR~AL~eaL~EN~~Lh~~ie~~~eEi~~LkeE 56 (79)
T 2zxx_A 23 EQRRKALYEALKENEKLHKEIEQKDSEIARLRKE 56 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334455667888899998899999999999887
No 73
>4dk0_A Putative MACA; alpha-hairpin, lipoyl, beta-barrel, periplasmic protein, MEM protein; 3.50A {Aggregatibacter actinomycetemcomitans} PDB: 4dk1_A
Probab=43.52 E-value=1.8e+02 Score=26.04 Aligned_cols=47 Identities=11% Similarity=0.085 Sum_probs=27.3
Q ss_pred HHHHHHHHHHhhhhcccchhhHHHHHHHHHHHHHhhcCCCCcccccccc
Q 018386 192 TIAKLKTQIAQMETGSKKWNTEISRLTQELELLRKSRTASDTPVLNRCT 240 (357)
Q Consensus 192 eI~RLqak~aeMe~~~Kkk~eeIs~L~~eLe~lrk~r~a~~tpvl~~ct 240 (357)
++...++.+...+........++..++.+|+.++.... .|.|.-++.
T Consensus 116 ~~~~a~~~~~~a~a~~~~~~~~l~~~~~~l~~a~~~l~--~~~i~AP~~ 162 (369)
T 4dk0_A 116 TLNTAKATLNNAKAEMDVVQENIKQAEIEVNTAETNLG--YTKITSPID 162 (369)
T ss_dssp GHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC--CSSCCCSCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--cCEEECCCC
Confidence 34444555555555555666777777888887776543 343433333
No 74
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=43.13 E-value=1.4e+02 Score=26.63 Aligned_cols=76 Identities=16% Similarity=0.262 Sum_probs=32.6
Q ss_pred hhhHHHhhhhhHHHHHHH----HHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHH-------hhhhcccchhhHHHHHHH
Q 018386 151 ENDLTSKINSKRAEVDRA----NERIEKLLASTEQLQLSNNEKDETIAKLKTQIA-------QMETGSKKWNTEISRLTQ 219 (357)
Q Consensus 151 E~Dyt~lLK~K~~EvaQA----tE~iqKL~q~~EeLQ~~nqeKDdeI~RLqak~a-------eMe~~~Kkk~eeIs~L~~ 219 (357)
|.|-+.++|+-..|.-.+ -..+..|+.-+-.|+..-..=+.++..||+.+. .|.-...+....|.-|..
T Consensus 25 EsE~~~rlkK~~tEl~k~~~~~E~~~rELq~~~~~L~~~k~~Leke~~~LQa~L~qEr~~r~q~se~~~elq~ri~~L~~ 104 (168)
T 3o0z_A 25 ESDTAVRLRKSHTEMSKSISQLESLNRELQERNRILENSKSQTDKDYYQLQAILEAERRDRGHDSEMIGDLQARITSLQE 104 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555556666655554322 222233333333333333333344444444432 222333334445555555
Q ss_pred HHHHHHh
Q 018386 220 ELELLRK 226 (357)
Q Consensus 220 eLe~lrk 226 (357)
||+.+|.
T Consensus 105 El~~~k~ 111 (168)
T 3o0z_A 105 EVKHLKH 111 (168)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 5555443
No 75
>2e7s_A RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 3.00A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=42.90 E-value=46 Score=28.71 Aligned_cols=49 Identities=22% Similarity=0.328 Sum_probs=35.7
Q ss_pred HHHHHHHhhhhhhhhhHHHHHHHHHHhhhhcccchhhHHHHHHHHHHHH
Q 018386 176 LASTEQLQLSNNEKDETIAKLKTQIAQMETGSKKWNTEISRLTQELELL 224 (357)
Q Consensus 176 ~q~~EeLQ~~nqeKDdeI~RLqak~aeMe~~~Kkk~eeIs~L~~eLe~l 224 (357)
.....+|+.--...+.++.+|+.++++-.........+...++.|||.|
T Consensus 31 ~~~l~~l~~~l~~~~~e~~~L~~~l~eE~~~R~~aE~~~~~ie~ElE~L 79 (135)
T 2e7s_A 31 KEDYNTLKRELSDRDDEVKRLREDIAKENELRTKAEEEADKLNKEVEDL 79 (135)
T ss_dssp HHHHHHHHHHTTTHHHHHHTHHHHHHHTTSHHHHHHHTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344455555567888999999998877777777777777777777776
No 76
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=41.00 E-value=1.3e+02 Score=28.21 Aligned_cols=27 Identities=22% Similarity=0.390 Sum_probs=17.3
Q ss_pred HHHhhhhcccchhhHHHHHHHHHHHHH
Q 018386 199 QIAQMETGSKKWNTEISRLTQELELLR 225 (357)
Q Consensus 199 k~aeMe~~~Kkk~eeIs~L~~eLe~lr 225 (357)
++.|+|...++.+.+|..++.+++.+|
T Consensus 444 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 470 (471)
T 3mq9_A 444 KVEELEGEITTLNHKLQDASAEVERLR 470 (471)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 455555555566777777777776665
No 77
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=40.94 E-value=18 Score=29.89 Aligned_cols=46 Identities=24% Similarity=0.288 Sum_probs=31.6
Q ss_pred hHHHHHHHHHHhhhhcccchhhHHHHHHHHHHHHHhhcC---CCCccccc
Q 018386 191 ETIAKLKTQIAQMETGSKKWNTEISRLTQELELLRKSRT---ASDTPVLN 237 (357)
Q Consensus 191 deI~RLqak~aeMe~~~Kkk~eeIs~L~~eLe~lrk~r~---a~~tpvl~ 237 (357)
+++..|+.++..++....++.++|..|+.+|+... .|+ .+-|.||-
T Consensus 12 e~~~~lr~ei~~Le~E~~rLr~~~~~LE~~Le~~~-l~Gd~~~~~TKVlH 60 (100)
T 1go4_E 12 EEADTLRLKVEELEGERSRLEEEKRMLEAQLERRA-LQGDYDQSRTKVLH 60 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSS-CCSCCCTTTEEEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hccccCCccCeeee
Confidence 36666777777777777788899999999998753 333 33455553
No 78
>4gkw_A Spindle assembly abnormal protein 6; double helix, SAS-5, centriole, structural protein; 3.30A {Caenorhabditis elegans}
Probab=40.21 E-value=2e+02 Score=25.46 Aligned_cols=105 Identities=17% Similarity=0.267 Sum_probs=48.2
Q ss_pred HhhhchhHHHHHHHHHHHHhcCCCCCCcchhhHHhhhhhhhhhhhhhHhhhhhHHHhhhhhHHHHHHHHHHHHHHHHHHH
Q 018386 101 MLEYTDDQLADFMAWFDLLRQKPKDGEPKSIEVSAFLDERAFLWNQYKVMENDLTSKINSKRAEVDRANERIEKLLASTE 180 (357)
Q Consensus 101 ~lE~teDeL~DFka~~~~L~~~lke~SeKdkEVsALlaEKdFVWNQ~k~ME~Dyt~lLK~K~~EvaQAtE~iqKL~q~~E 180 (357)
++|-.++.++|++.-+.-|..++.++ .-|=++|-+-+.- |+...+-|++...- -+-.|.+|.+.++
T Consensus 5 laE~K~~~ia~L~~D~~s~~~eleEn----------qeEL~iVgkML~E-EqgKVDQlqKRn~~---HQKEi~~Lrae~~ 70 (167)
T 4gkw_A 5 LVEDKEDEVADLKQDTESLQKQLEEN----------QEELEIVGNMLRE-EQGKVDQLQKRNVA---HQKEIGKLRAELG 70 (167)
T ss_dssp --CCSSSSHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHH-HHHHHHHHHHHHHH---HHHHHHHHHHHHH
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHH-HHhhHHHHHHhccH---HHHHHHHHHHHHH
Confidence 45666677788777777776555432 1233333332221 34444444432211 1223455555555
Q ss_pred HHhhhhhhhhhHHHHH----------HHHHHhhhhcccchhhHHHHHHH
Q 018386 181 QLQLSNNEKDETIAKL----------KTQIAQMETGSKKWNTEISRLTQ 219 (357)
Q Consensus 181 eLQ~~nqeKDdeI~RL----------qak~aeMe~~~Kkk~eeIs~L~~ 219 (357)
.+|.--++-|.-+.|- =-|+-|+|++.|++|.-..-|+.
T Consensus 71 ~~QRn~~K~~~~Lkrn~~qQnQQSlDiRKLrELEADLKEKDsMVe~LT~ 119 (167)
T 4gkw_A 71 TAQRNLEKADQLLKRNSQQQNQQSLDMRKLGELEADLKEKDSMVESLTE 119 (167)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHTHHHHHHHHHHHHH
T ss_pred HHHHhHHHHHHHHHhhhHHHhHhhhhHHHHHHHHhHHhhhhHHHHHHHH
Confidence 5554333222222221 01345677777777755444443
No 79
>1ses_A Seryl-tRNA synthetase; ligase; HET: AHX AMP; 2.50A {Thermus thermophilus} SCOP: a.2.7.1 d.104.1.1 PDB: 1ser_A* 1set_A* 1sry_A
Probab=39.83 E-value=84 Score=30.50 Aligned_cols=71 Identities=14% Similarity=0.165 Sum_probs=45.2
Q ss_pred HhhhhhHHHHHHHHHHHHHHHHHHHHHhhh-hhhhhhHHHHHHHHHHhhhhcccchhhHHHHHHHHHHHHHh
Q 018386 156 SKINSKRAEVDRANERIEKLLASTEQLQLS-NNEKDETIAKLKTQIAQMETGSKKWNTEISRLTQELELLRK 226 (357)
Q Consensus 156 ~lLK~K~~EvaQAtE~iqKL~q~~EeLQ~~-nqeKDdeI~RLqak~aeMe~~~Kkk~eeIs~L~~eLe~lrk 226 (357)
+.|..-+.+-.++...++.|++..+.+... .+.+.+++..|.+++.++....+..+++...++.+|+.+-.
T Consensus 28 ~~~~~~~~~~r~~~~~~~~l~~~~n~~sk~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (421)
T 1ses_A 28 EALLALDREVQELKKRLQEVQTERNQVAKRVPKAPPEEKEALIARGKALGEEAKRLEEALREKEARLEALLL 99 (421)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444445555555566665555422 22344677888888888888888888888888888876544
No 80
>3jsv_C NF-kappa-B essential modulator; ubiquitin, coiled-coil, cellular signaling, cytoplasm, isopeptide bond, nucleus, phosphoprotein, UBL conjugation; 2.70A {Mus musculus} PDB: 3f89_A 2zvo_B 2zvn_B
Probab=39.52 E-value=50 Score=27.09 Aligned_cols=23 Identities=22% Similarity=0.302 Sum_probs=17.8
Q ss_pred hcccchhhHHHHHHHHHHHHHhh
Q 018386 205 TGSKKWNTEISRLTQELELLRKS 227 (357)
Q Consensus 205 ~~~Kkk~eeIs~L~~eLe~lrk~ 227 (357)
++..+..+|++.|...|..|++-
T Consensus 61 adREkl~~eKe~L~~ql~~lq~q 83 (94)
T 3jsv_C 61 HAREKLVEKKEYLQEQLEQLQRE 83 (94)
T ss_dssp HHHHHHHHTTSHHHHHHHHHHHT
T ss_pred HHHHHHHhHHHHHHHHHHHHHHH
Confidence 34556788899999999888764
No 81
>2no2_A HIP-I, huntingtin-interacting protein 1; clathrin light chain binding, HIP1 coiled-coil domain, endocytosis, clathrin SELF-assembly, cell adhesion; 2.80A {Homo sapiens}
Probab=38.85 E-value=1.6e+02 Score=23.99 Aligned_cols=59 Identities=17% Similarity=0.333 Sum_probs=35.7
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHhhhhcccchhhHHHHHHHHHHHH
Q 018386 166 DRANERIEKLLASTEQLQLSNNEKDETIAKLKTQIAQMETGSKKWNTEISRLTQELELL 224 (357)
Q Consensus 166 aQAtE~iqKL~q~~EeLQ~~nqeKDdeI~RLqak~aeMe~~~Kkk~eeIs~L~~eLe~l 224 (357)
.++.++++.=...++.|+..-..|++++.+|+..+..++..-..+...+..|..|...|
T Consensus 43 ~~~~~k~~eq~~~le~lk~eL~~~~~el~~lq~~l~~~~~~~~~l~~~~~~l~~Ek~~L 101 (107)
T 2no2_A 43 DQGQRKTQEQLEVLESLKQELATSQRELQVLQGSLETSAQSEANWAAEFAELEKERDSL 101 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555555556666666677788888887777655555555555555555554444
No 82
>4gkw_A Spindle assembly abnormal protein 6; double helix, SAS-5, centriole, structural protein; 3.30A {Caenorhabditis elegans}
Probab=38.56 E-value=1.1e+02 Score=26.91 Aligned_cols=25 Identities=8% Similarity=0.058 Sum_probs=16.1
Q ss_pred cchhhHHhhhhhhhhhhhhhHhhhh
Q 018386 128 PKSIEVSAFLDERAFLWNQYKVMEN 152 (357)
Q Consensus 128 eKdkEVsALlaEKdFVWNQ~k~ME~ 152 (357)
--.+||..|.||.....--|.--++
T Consensus 57 ~HQKEi~~Lrae~~~~QRn~~K~~~ 81 (167)
T 4gkw_A 57 AHQKEIGKLRAELGTAQRNLEKADQ 81 (167)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 3457888888887766555544443
No 83
>3a2a_A Voltage-gated hydrogen channel 1; voltage-gated proton channel, alternative splicing, coiled C transport, ionic channel, membrane, transmembrane; 2.00A {Homo sapiens}
Probab=38.37 E-value=36 Score=25.90 Aligned_cols=29 Identities=31% Similarity=0.508 Sum_probs=23.5
Q ss_pred HHHHHHHHHhhhhhhhhhHHHHHHHHHHh
Q 018386 174 KLLASTEQLQLSNNEKDETIAKLKTQIAQ 202 (357)
Q Consensus 174 KL~q~~EeLQ~~nqeKDdeI~RLqak~ae 202 (357)
.|...+++|+-+..+|+.||.||.+=+.+
T Consensus 22 ~L~~kv~~Le~~c~e~eQEieRL~~LLkq 50 (58)
T 3a2a_A 22 QLAAKIQHLEFSCSEKEQEIERLNKLLRQ 50 (58)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46677788888899999999999887654
No 84
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=38.16 E-value=2.3e+02 Score=26.77 Aligned_cols=24 Identities=13% Similarity=0.010 Sum_probs=9.7
Q ss_pred HHhhhhcccchhhHHHHHHHHHHH
Q 018386 200 IAQMETGSKKWNTEISRLTQELEL 223 (357)
Q Consensus 200 ~aeMe~~~Kkk~eeIs~L~~eLe~ 223 (357)
+..|....+++++|..+|..+++.
T Consensus 437 ~~~~~~~~~~~~~~~~~~~~~~~~ 460 (487)
T 3oja_A 437 WDMYQHKETQLAEENARLKKLNGE 460 (487)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhHHHHHHHHhhhhhhhhhh
Confidence 333333334444444444444433
No 85
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=36.84 E-value=44 Score=32.30 Aligned_cols=63 Identities=16% Similarity=0.244 Sum_probs=43.1
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHhhhhcccchhhHHHHHHHHHHHHHhhcC
Q 018386 167 RANERIEKLLASTEQLQLSNNEKDETIAKLKTQIAQMETGSKKWNTEISRLTQELELLRKSRT 229 (357)
Q Consensus 167 QAtE~iqKL~q~~EeLQ~~nqeKDdeI~RLqak~aeMe~~~Kkk~eeIs~L~~eLe~lrk~r~ 229 (357)
+=.+.+..|++..++|+....+-..++..|+.++.+.+...++.-.+|..|..-+.=...-|.
T Consensus 7 ~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~rr~l~n~~~elkgnIrV~vRvRP 69 (403)
T 4etp_A 7 ALKEKIAALKEKIAALKEKIKDTELGMKELNEILIKEETVRRTLHNELQELRGNIRVYLRIRP 69 (403)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSEEEEEEECC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCeEEEEEeCC
Confidence 334555555555555555555555677788888888888888999999988876554444443
No 86
>1j1d_C Troponin I, TNI; THIN filament, muscle regulation, Ca2+ binding protein, EF- hand, coiled-coil, contractIle protein; 2.61A {Homo sapiens} SCOP: h.1.25.2
Probab=35.99 E-value=1.2e+02 Score=25.93 Aligned_cols=60 Identities=27% Similarity=0.253 Sum_probs=45.6
Q ss_pred HHHHHhhhhhhhhhHHHHHHHHHHhhhhcccchhhHHHHHHHHHHHHHhhcCCCCcccccccc
Q 018386 178 STEQLQLSNNEKDETIAKLKTQIAQMETGSKKWNTEISRLTQELELLRKSRTASDTPVLNRCT 240 (357)
Q Consensus 178 ~~EeLQ~~nqeKDdeI~RLqak~aeMe~~~Kkk~eeIs~L~~eLe~lrk~r~a~~tpvl~~ct 240 (357)
+.++||....+--+.|..|.++-=.+|.-+++.+-||..|...+..||. .-.-|.|.+-.
T Consensus 59 s~~~L~e~~keLh~~I~~LEeEKYDlE~kvkkq~yEI~dL~~rV~Dl~g---KfkKP~LkkVr 118 (133)
T 1j1d_C 59 GFAELQDLARQLHARVDKVDEERYDIEAKVTKNITEIADLTQKIFDLRG---KFKRPTLRRVR 118 (133)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-----------CCCC
T ss_pred CHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHcchHHHHHHHHHHHHHc---ccCCCccCccc
Confidence 6788888888888999999999888999999999999999999999863 23567776543
No 87
>1wle_A Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bos taurus}
Probab=35.36 E-value=92 Score=31.29 Aligned_cols=36 Identities=8% Similarity=0.065 Sum_probs=27.0
Q ss_pred hHHHHHHHHHHhhhhcccchhhHHHHHHHHHHHHHh
Q 018386 191 ETIAKLKTQIAQMETGSKKWNTEISRLTQELELLRK 226 (357)
Q Consensus 191 deI~RLqak~aeMe~~~Kkk~eeIs~L~~eLe~lrk 226 (357)
+++..|.+++.++....+..+++...++.+|+.+-.
T Consensus 116 ~~~~~l~~~~~~l~~~i~~l~~~~~~~~~~l~~~l~ 151 (501)
T 1wle_A 116 PQYQSLRARGREIRKQLTLLYPKEAQLEEQFYLRAL 151 (501)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467788888887777777777777788888765543
No 88
>3swk_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural; 1.70A {Homo sapiens}
Probab=35.25 E-value=1.6e+02 Score=22.96 Aligned_cols=63 Identities=19% Similarity=0.345 Sum_probs=31.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHhhhhcccchhhHHHHHHHHHHHHHh
Q 018386 164 EVDRANERIEKLLASTEQLQLSNNEKDETIAKLKTQIAQMETGSKKWNTEISRLTQELELLRK 226 (357)
Q Consensus 164 EvaQAtE~iqKL~q~~EeLQ~~nqeKDdeI~RLqak~aeMe~~~Kkk~eeIs~L~~eLe~lrk 226 (357)
|..-+...+..+...-|.=...-+.=..+|.-|+-.+-+.-...-.....|+-|.+||..||+
T Consensus 22 e~dn~~~~~edfk~KyE~E~~~R~~~E~d~~~LrkdvD~a~l~r~dLE~kvesL~eEl~fLkk 84 (86)
T 3swk_A 22 ERDNLAEDIMRLREKLQEEMLQREEAENTLQSFRQDVDNASLARLDLERKVESLQEEIAFLKK 84 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 333344444444333333333333334455555444333222233445568889999998886
No 89
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=35.22 E-value=1.8e+02 Score=23.63 Aligned_cols=13 Identities=31% Similarity=0.493 Sum_probs=4.9
Q ss_pred chhhHHHHHHHHH
Q 018386 209 KWNTEISRLTQEL 221 (357)
Q Consensus 209 kk~eeIs~L~~eL 221 (357)
..+.+|.+.-+|.
T Consensus 93 ~~r~e~~~ql~EY 105 (129)
T 3tnu_B 93 KAKQDMARLLREY 105 (129)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3333333333333
No 90
>2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: SSA; 2.60A {Pyrococcus horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A* 2zr3_A
Probab=34.75 E-value=80 Score=31.08 Aligned_cols=37 Identities=11% Similarity=0.213 Sum_probs=25.6
Q ss_pred hHHHHHHHHHHhhhhcccchhhHHHHHHHHHHHHHhh
Q 018386 191 ETIAKLKTQIAQMETGSKKWNTEISRLTQELELLRKS 227 (357)
Q Consensus 191 deI~RLqak~aeMe~~~Kkk~eeIs~L~~eLe~lrk~ 227 (357)
+++..|.+++.++....+..+++...++.+|+.+-.+
T Consensus 69 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 105 (455)
T 2dq0_A 69 EPVDELLAKSREIVKRIGELENEVEELKKKIDYYLWR 105 (455)
T ss_dssp CCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4456677777777777777777777777777665543
No 91
>2oqq_A Transcription factor HY5; homodimer leucine zipper; 2.00A {Arabidopsis thaliana}
Probab=33.75 E-value=44 Score=24.07 Aligned_cols=33 Identities=21% Similarity=0.461 Sum_probs=24.8
Q ss_pred HHHHHHHHhhhhcccchhhHHHHHHHHHHHHHh
Q 018386 194 AKLKTQIAQMETGSKKWNTEISRLTQELELLRK 226 (357)
Q Consensus 194 ~RLqak~aeMe~~~Kkk~eeIs~L~~eLe~lrk 226 (357)
+.|++++.+|+.---+..+.||.|..|=+-||.
T Consensus 6 ~eLE~r~k~le~~naeLEervstLq~EN~mLRq 38 (42)
T 2oqq_A 6 SELENRVKDLENKNSELEERLSTLQNENQMLRH 38 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 456666666666666778889999999888875
No 92
>2l5g_B Putative uncharacterized protein NCOR2, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=33.37 E-value=75 Score=22.82 Aligned_cols=35 Identities=20% Similarity=0.326 Sum_probs=25.1
Q ss_pred hHHHhhhhhHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 018386 153 DLTSKINSKRAEVDRANERIEKLLASTEQLQLSNN 187 (357)
Q Consensus 153 Dyt~lLK~K~~EvaQAtE~iqKL~q~~EeLQ~~nq 187 (357)
|+.-.+.+=+.|++...++|.+|+....+|+.++.
T Consensus 6 ~l~qkI~kVdrEI~Kte~kI~~lqkKlkeLee~a~ 40 (42)
T 2l5g_B 6 ELIQNMDRVDREITMVEQQISKLKKKQQQLEEEAA 40 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 34445566677888888888888888888876543
No 93
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=33.29 E-value=1.5e+02 Score=24.38 Aligned_cols=60 Identities=22% Similarity=0.262 Sum_probs=43.2
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHhhhh--c-------------------ccchhhHHHHHHHHHHHHHh
Q 018386 168 ANERIEKLLASTEQLQLSNNEKDETIAKLKTQIAQMET--G-------------------SKKWNTEISRLTQELELLRK 226 (357)
Q Consensus 168 AtE~iqKL~q~~EeLQ~~nqeKDdeI~RLqak~aeMe~--~-------------------~Kkk~eeIs~L~~eLe~lrk 226 (357)
.+|...+|...++.|...++.=-.+|..|+.++..... + .....++|++|..|.+.||.
T Consensus 10 ~~e~~~~lr~ei~~Le~E~~rLr~~~~~LE~~Le~~~l~Gd~~~~~TKVlH~~~NPa~~a~~~~~~~~e~Lq~E~erLr~ 89 (100)
T 1go4_E 10 SREEADTLRLKVEELEGERSRLEEEKRMLEAQLERRALQGDYDQSRTKVLHMSLNPTSVARQRLREDHSQLQAECERLRG 89 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCSCCCTTTEEEEEESSCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCccCeeeeecCChHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677788888888888887777888888887653110 0 11356899999999999986
Q ss_pred h
Q 018386 227 S 227 (357)
Q Consensus 227 ~ 227 (357)
.
T Consensus 90 ~ 90 (100)
T 1go4_E 90 L 90 (100)
T ss_dssp H
T ss_pred H
Confidence 4
No 94
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=33.20 E-value=2.2e+02 Score=26.77 Aligned_cols=26 Identities=19% Similarity=0.392 Sum_probs=12.8
Q ss_pred HHHHHHHHHHhhhhcccchhhHHHHH
Q 018386 192 TIAKLKTQIAQMETGSKKWNTEISRL 217 (357)
Q Consensus 192 eI~RLqak~aeMe~~~Kkk~eeIs~L 217 (357)
.|..|+.++++++...++..-+|.+|
T Consensus 444 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 469 (471)
T 3mq9_A 444 KVEELEGEITTLNHKLQDASAEVERL 469 (471)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44444444444444444555555544
No 95
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=32.80 E-value=2e+02 Score=23.46 Aligned_cols=24 Identities=21% Similarity=0.170 Sum_probs=9.8
Q ss_pred hHHhhhhhhhhhhhhhHhhhhhHH
Q 018386 132 EVSAFLDERAFLWNQYKVMENDLT 155 (357)
Q Consensus 132 EVsALlaEKdFVWNQ~k~ME~Dyt 155 (357)
||.+|..-+...=+++.-+|..|.
T Consensus 53 el~~l~~~~~sLE~~l~e~e~~~~ 76 (131)
T 3tnu_A 53 ELQSQLSMKASLENSLEETKGRYC 76 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHH
Confidence 333333334444444444444443
No 96
>3qh9_A Liprin-beta-2; coiled-coil, dimerization, structural protein; 2.01A {Homo sapiens}
Probab=32.63 E-value=1.6e+02 Score=23.56 Aligned_cols=19 Identities=26% Similarity=0.375 Sum_probs=10.7
Q ss_pred hhhcccchhhHHHHHHHHH
Q 018386 203 METGSKKWNTEISRLTQEL 221 (357)
Q Consensus 203 Me~~~Kkk~eeIs~L~~eL 221 (357)
+.-....++.||++|..+|
T Consensus 59 Lq~qLe~kd~ei~rL~~~l 77 (81)
T 3qh9_A 59 LQEQVALKDAEIERLHSQL 77 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHHHHHHH
Confidence 3333336666777766654
No 97
>1zxa_A CGMP-dependent protein kinase 1, alpha isozyme; parallel coiled coil dimer, transferase; NMR {Homo sapiens}
Probab=32.39 E-value=51 Score=25.46 Aligned_cols=28 Identities=25% Similarity=0.389 Sum_probs=20.7
Q ss_pred HHHHhhhhhhhhhHHHHHHHHHHhhhhc
Q 018386 179 TEQLQLSNNEKDETIAKLKTQIAQMETG 206 (357)
Q Consensus 179 ~EeLQ~~nqeKDdeI~RLqak~aeMe~~ 206 (357)
+.+|+...+.||++|..|+.++.+..+-
T Consensus 27 I~eLE~~L~~kd~eI~eLr~~LdK~qsV 54 (67)
T 1zxa_A 27 IKELEKRLSEKEEEIQELKRKLHKCQSV 54 (67)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4567777889999999999888755443
No 98
>1fxk_A Prefoldin; archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1 PDB: 1fxk_B
Probab=32.35 E-value=1.6e+02 Score=22.29 Aligned_cols=40 Identities=18% Similarity=0.303 Sum_probs=30.3
Q ss_pred hhhhhHHHHHHHHHHhhhhcccchhhHHHHHHHHHHHHHh
Q 018386 187 NEKDETIAKLKTQIAQMETGSKKWNTEISRLTQELELLRK 226 (357)
Q Consensus 187 qeKDdeI~RLqak~aeMe~~~Kkk~eeIs~L~~eLe~lrk 226 (357)
+.+++-+..|......++...+.....+..+..+++.++.
T Consensus 61 ~~~~e~~~~L~~~~e~i~~~i~~le~~~~~~~~~l~~lk~ 100 (107)
T 1fxk_A 61 VAKDELTEELQEKLETLQLREKTIERQEERVMKKLQEMQV 100 (107)
T ss_dssp ECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3577888888888887777777777777777777777664
No 99
>2ve7_A Kinetochore protein HEC1, kinetochore protein SPC; mitosis, centromere, cell cycle, microtubule, C division, calponin homology; 2.88A {Homo sapiens} PDB: 3iz0_C*
Probab=31.47 E-value=1e+02 Score=28.91 Aligned_cols=34 Identities=26% Similarity=0.291 Sum_probs=20.0
Q ss_pred hhhhhHHHHHHHHHHhhhhcccchhhHHHHHHHHHHHHHhh
Q 018386 187 NEKDETIAKLKTQIAQMETGSKKWNTEISRLTQELELLRKS 227 (357)
Q Consensus 187 qeKDdeI~RLqak~aeMe~~~Kkk~eeIs~L~~eLe~lrk~ 227 (357)
+.+..+|..|+++.. ...+||++|+.+.+...++
T Consensus 181 n~~~~eie~L~~~~~-------~L~eEi~~Le~~~e~~~k~ 214 (315)
T 2ve7_A 181 NVDAFKLESLEAKNR-------ALNEQIARLEQERSTANKA 214 (315)
T ss_dssp TCCTTHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHhhhhh
Confidence 444566666666665 4455566666666665554
No 100
>3qne_A Seryl-tRNA synthetase, cytoplasmic; amino acid biosynthesis, CTG-clade, codon ambiguity, pathoge II aminoacyl-tRNA synthetase family; 2.00A {Candida albicans} PDB: 3qo7_A* 3qo8_A* 3qo5_A
Probab=31.31 E-value=1.2e+02 Score=30.61 Aligned_cols=35 Identities=9% Similarity=0.052 Sum_probs=23.7
Q ss_pred HHHHHHHHHHhhhhcccchhhHHHHHHHHHHHHHh
Q 018386 192 TIAKLKTQIAQMETGSKKWNTEISRLTQELELLRK 226 (357)
Q Consensus 192 eI~RLqak~aeMe~~~Kkk~eeIs~L~~eLe~lrk 226 (357)
++..|.+++.++....+..+++...++.+|+.+-.
T Consensus 72 ~~~~l~~~~~~l~~~i~~le~~~~~~~~~~~~~l~ 106 (485)
T 3qne_A 72 DAKDLIAEKEKLSNEKKEIIEKEAEADKNLRSKIN 106 (485)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35567777777777777777777777777755443
No 101
>3mtu_A Tropomyosin alpha-1 chain, microtubule-associated RP/EB family member 1; tropomysoin, overlap complex, coiled-coils, contractIle PROT; HET: MSE; 2.10A {Gallus gallus} PDB: 3mud_C*
Probab=30.72 E-value=36 Score=26.12 Aligned_cols=21 Identities=10% Similarity=0.260 Sum_probs=16.2
Q ss_pred hHHhhhhhhhhhhhhhHhhhh
Q 018386 132 EVSAFLDERAFLWNQYKVMEN 152 (357)
Q Consensus 132 EVsALlaEKdFVWNQ~k~ME~ 152 (357)
.+..|-.||||.|+.++-+|-
T Consensus 24 ~~e~lE~ERdFYf~KLRdiE~ 44 (75)
T 3mtu_A 24 RAEQAEADKDFYFGKLRNIEL 44 (75)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhHHHHHHHHHHH
Confidence 345577799999999988864
No 102
>4ani_A Protein GRPE; chaperone cycle, complementary assay; 4.09A {Geobacillus kaustophilus}
Probab=29.83 E-value=39 Score=30.79 Aligned_cols=48 Identities=21% Similarity=0.190 Sum_probs=25.7
Q ss_pred HHHHHHHHHHhhhhhhhhhHHHHHHHHHHhhhhcccchhhHHHHHHHHHHHHHhhcCC
Q 018386 173 EKLLASTEQLQLSNNEKDETIAKLKTQIAQMETGSKKWNTEISRLTQELELLRKSRTA 230 (357)
Q Consensus 173 qKL~q~~EeLQ~~nqeKDdeI~RLqak~aeMe~~~Kkk~eeIs~L~~eLe~lrk~r~a 230 (357)
..|.+.+++|+....+--|...|++|++. .=--+..+|.+.+++.-..
T Consensus 62 ~~l~~~l~~l~~e~~el~d~~lR~~AEfe----------N~RkR~~rE~e~~~~~a~e 109 (213)
T 4ani_A 62 AAAKAQIAELEAKLSEMEHRYLRLYADFE----------NFRRRTRQEMEAAEKYRAQ 109 (213)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHTTH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHH
Confidence 34455555555555555566677777664 2223445555555555443
No 103
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=29.59 E-value=1.1e+02 Score=22.29 Aligned_cols=36 Identities=25% Similarity=0.293 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHhh
Q 018386 168 ANERIEKLLASTEQLQLSNNEKDETIAKLKTQIAQM 203 (357)
Q Consensus 168 AtE~iqKL~q~~EeLQ~~nqeKDdeI~RLqak~aeM 203 (357)
-.+.++.|++.++.|+..|..=..+|..|+.++..+
T Consensus 21 Kk~~~~~Le~~v~~L~~~n~~L~~ei~~L~~e~~~L 56 (63)
T 2wt7_A 21 RRELTDTLQAETDQLEDEKSALQTEIANLLKEKEKL 56 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346678888888888888877777777777766533
No 104
>1j1e_C Troponin I, TNI; THIN filament, muscle regulation, Ca2+ binding protein, EF- hand, coiled-coil, contractIle protein; 3.30A {Homo sapiens} SCOP: h.1.25.2
Probab=29.13 E-value=1.6e+02 Score=26.38 Aligned_cols=61 Identities=26% Similarity=0.236 Sum_probs=45.5
Q ss_pred HHHHHhhhhhhhhhHHHHHHHHHHhhhhcccchhhHHHHHHHHHHHHHhhcCCCCccccccccc
Q 018386 178 STEQLQLSNNEKDETIAKLKTQIAQMETGSKKWNTEISRLTQELELLRKSRTASDTPVLNRCTR 241 (357)
Q Consensus 178 ~~EeLQ~~nqeKDdeI~RLqak~aeMe~~~Kkk~eeIs~L~~eLe~lrk~r~a~~tpvl~~ct~ 241 (357)
+.++||....+--+.|..|.++-=.+|.-++..+-||..|...+..|| +.-.-|.|.+-.-
T Consensus 59 se~~L~e~ckELh~~I~~LEeEKYDlE~kvkkqdyEI~dL~~rV~DLr---GKFkKP~LkkV~~ 119 (180)
T 1j1e_C 59 GFAELQDLARQLHARVDKVDEERYDIEAKVTKNITEIADLTQKIFDLR---GKFKRPTLRRVRI 119 (180)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-------------CCC
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcchhHHHHHHHHHHHH---hcccccchhhhcc
Confidence 678888888888899999999988889999999999999999999996 3346788888765
No 105
>3swf_A CGMP-gated cation channel alpha-1; coiled-coil, assembly domain, transport protein; 2.14A {Bos taurus}
Probab=28.97 E-value=1.2e+02 Score=23.96 Aligned_cols=49 Identities=18% Similarity=0.331 Sum_probs=34.3
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHhhhhcccchhhHHHHHHHHHHHHHh
Q 018386 168 ANERIEKLLASTEQLQLSNNEKDETIAKLKTQIAQMETGSKKWNTEISRLTQELELLRK 226 (357)
Q Consensus 168 AtE~iqKL~q~~EeLQ~~nqeKDdeI~RLqak~aeMe~~~Kkk~eeIs~L~~eLe~lrk 226 (357)
.-|++.+|..+++.||. ...||-+ |.++--.+.+.+|..|+..+-..+.
T Consensus 5 lEEKv~~LE~sld~LQT-------rfARLLa---Ey~ssQ~KLKqRit~LE~~~~~~~~ 53 (74)
T 3swf_A 5 LEEKVTRMESSVDLLQT-------RFARILA---EYESMQQKLKQRLTKVEKFLKPLID 53 (74)
T ss_dssp HHHHHHHHHHHHHHHHH-------HHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH-------HHHHHHH---HHHHHHHHHHHHHHHHHHHhcccCC
Confidence 45778888888888883 3455544 4445556788999999987766543
No 106
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=28.86 E-value=1.2e+02 Score=22.86 Aligned_cols=37 Identities=22% Similarity=0.197 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHH
Q 018386 163 AEVDRANERIEKLLASTEQLQLSNNEKDETIAKLKTQ 199 (357)
Q Consensus 163 ~EvaQAtE~iqKL~q~~EeLQ~~nqeKDdeI~RLqak 199 (357)
.-...|.+=|..|++.++.|+...++=-.++..|+++
T Consensus 40 ~iL~~Ai~YI~~L~~~~~~l~~e~~~L~~~~~~L~~~ 76 (83)
T 1nkp_B 40 QILDKATEYIQYMRRKNHTHQQDIDDLKRQNALLEQQ 76 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445567777777776666654333333333333333
No 107
>3t5v_A Nuclear mRNA export protein SAC3; PCI, mRNA nuclear export, mRNA, nuclear, transcription; 2.90A {Saccharomyces cerevisiae}
Probab=28.39 E-value=66 Score=30.30 Aligned_cols=53 Identities=23% Similarity=0.412 Sum_probs=31.9
Q ss_pred HHHHHHHHhcCCCCCCcchhhHHhhhhhhhhhhhhhHhhhhhHHHhhhhhHHHHHHHHHHHHH
Q 018386 112 FMAWFDLLRQKPKDGEPKSIEVSAFLDERAFLWNQYKVMENDLTSKINSKRAEVDRANERIEK 174 (357)
Q Consensus 112 Fka~~~~L~~~lke~SeKdkEVsALlaEKdFVWNQ~k~ME~Dyt~lLK~K~~EvaQAtE~iqK 174 (357)
++..+++|..++.+. +-.-=+|+|+|++-|=+|++ .=.-+..++..--|.+..
T Consensus 14 L~~Tl~yL~~~~~~~---------~~~~y~fi~Dr~RsIRqDlt-vQ~i~~~~~v~v~E~~aR 66 (316)
T 3t5v_A 14 LVKTLDYIVDNLLTT---------LPESEGFLWDRMRSIRQDFT-YQNYSGPEAVDCNERIVR 66 (316)
T ss_dssp HHHHHHHHHHHTGGG---------TTTCHHHHHHHHHHHHHHHH-HTTCCSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhc---------chhhhHHHHhhhhhhccCce-eeccCCchHHHHHHHHHH
Confidence 444556665554432 11235899999999999997 333344555555555543
No 108
>1vcs_A Vesicle transport through interaction with T- snares homolog 1A; HABC domain, VTI1, UP and DOWN three helix bundle, LEFT-handed twist; NMR {Mus musculus} SCOP: a.47.2.1
Probab=28.39 E-value=1.1e+02 Score=24.29 Aligned_cols=21 Identities=14% Similarity=0.352 Sum_probs=16.2
Q ss_pred chhhHHHHHHHHHHHHHhhcC
Q 018386 209 KWNTEISRLTQELELLRKSRT 229 (357)
Q Consensus 209 kk~eeIs~L~~eLe~lrk~r~ 229 (357)
..+.++..|..+|..++-...
T Consensus 78 ~Yk~dL~~lk~elk~~~~~~~ 98 (102)
T 1vcs_A 78 SYKQEMGKLETDFKRSRIASG 98 (102)
T ss_dssp HHHHHHHHHHHHTHHHHTCCS
T ss_pred HHHHHHHHHHHHHHHHHhhcc
Confidence 677788888888888877644
No 109
>1m1j_B Fibrinogen beta chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_B*
Probab=27.93 E-value=2e+02 Score=28.91 Aligned_cols=31 Identities=13% Similarity=0.244 Sum_probs=20.2
Q ss_pred hhhHHHHHHHHHHhhhhcccchhhHHHHHHHHHHHHHh
Q 018386 189 KDETIAKLKTQIAQMETGSKKWNTEISRLTQELELLRK 226 (357)
Q Consensus 189 KDdeI~RLqak~aeMe~~~Kkk~eeIs~L~~eLe~lrk 226 (357)
....|..|+..+. +.+..|..|+..+..+..
T Consensus 166 ~~~~i~~L~~~~~-------~l~~ki~~l~~~~~~~~~ 196 (464)
T 1m1j_B 166 IPSSLRVLRAVID-------SLHKKIQKLENAIATQTD 196 (464)
T ss_dssp HHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHH-------HHHHHHHHHHHHHHHHHH
Confidence 3456666666654 566778888887765543
No 110
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=27.90 E-value=1.2e+02 Score=22.06 Aligned_cols=35 Identities=34% Similarity=0.433 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHhh
Q 018386 169 NERIEKLLASTEQLQLSNNEKDETIAKLKTQIAQM 203 (357)
Q Consensus 169 tE~iqKL~q~~EeLQ~~nqeKDdeI~RLqak~aeM 203 (357)
.+.++.|...++.|...|.+=..+|..|+.++..+
T Consensus 21 k~~~~~Le~~v~~L~~~n~~L~~~v~~L~~e~~~L 55 (62)
T 1jnm_A 21 LERIARLEEKVKTLKAQNSELASTANMLREQVAQL 55 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677888888888888888788888888877644
No 111
>1gmj_A ATPase inhibitor; coiled-coil structure, P dependent oligomerization, ATP hydrolysis; 2.2A {Bos taurus} SCOP: h.4.8.1 PDB: 1ohh_H* 1hf9_A
Probab=27.52 E-value=1.5e+02 Score=23.81 Aligned_cols=33 Identities=12% Similarity=0.243 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhhhhhhhhHHHHHHh
Q 018386 29 EQIETLVKEREILEDHLKMQHEKWVSDVRLYEDHISQ 65 (357)
Q Consensus 29 ~QvEsL~~ER~~LEa~ik~QhE~W~sdv~~lqdrLsq 65 (357)
.+.|.|.+-|++|+++|....+ .+..+|..|..
T Consensus 37 kekEqL~~LKkkl~~el~~h~~----ei~~le~~i~r 69 (84)
T 1gmj_A 37 RAKEQLAALKKHKENEISHHAK----EIERLQKEIER 69 (84)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHH
Confidence 3445566668999888887766 66666666654
No 112
>2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: SSA; 2.60A {Pyrococcus horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A* 2zr3_A
Probab=27.45 E-value=88 Score=30.78 Aligned_cols=67 Identities=19% Similarity=0.255 Sum_probs=46.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHH---HHhhhhcccchhhHHHHHHHHHHHHHhhcCC
Q 018386 164 EVDRANERIEKLLASTEQLQLSNNEKDETIAKLKTQ---IAQMETGSKKWNTEISRLTQELELLRKSRTA 230 (357)
Q Consensus 164 EvaQAtE~iqKL~q~~EeLQ~~nqeKDdeI~RLqak---~aeMe~~~Kkk~eeIs~L~~eLe~lrk~r~a 230 (357)
++...-+.-.+++..+++|+..-+.-..+|..++.+ ..++-...+..+++|..|+.++..+-.....
T Consensus 32 ~~~~l~~~~r~~~~~~~~l~~~~n~~sk~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (455)
T 2dq0_A 32 EILKLDTEWRTKLKEINRLRHERNKIAVEIGKRRKKGEPVDELLAKSREIVKRIGELENEVEELKKKIDY 101 (455)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455556677777888877777777778876543 3455566777788888888888887776654
No 113
>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A
Probab=27.42 E-value=2.6e+02 Score=24.27 Aligned_cols=83 Identities=13% Similarity=0.219 Sum_probs=40.9
Q ss_pred HHhhhhhhhhhhhhhHhhhhh---HHHhhhhhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHhhhhcccc
Q 018386 133 VSAFLDERAFLWNQYKVMEND---LTSKINSKRAEVDRANERIEKLLASTEQLQLSNNEKDETIAKLKTQIAQMETGSKK 209 (357)
Q Consensus 133 VsALlaEKdFVWNQ~k~ME~D---yt~lLK~K~~EvaQAtE~iqKL~q~~EeLQ~~nqeKDdeI~RLqak~aeMe~~~Kk 209 (357)
|..|-.+=.-|=|.+|+||.- |..+-..-+..+...++.....-.-.+....++++-.-+|++|..++. .
T Consensus 44 ~~eLEeeL~~v~~nlKsLE~seekasqrEd~yEeqIk~L~~kLKEAE~RAE~AERsv~kLEk~id~lEd~L~-------~ 116 (155)
T 2efr_A 44 SAELEEELKTVTNNLKSLEAQAEKYSQKEDKYEEEIKVLSDKLKEAETRAEFAERSVTKLEKSIDDLEDELY-------A 116 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------H
T ss_pred HHHHHHHHHHHHHhhccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------H
Confidence 334444555666888887642 222222222333333333333334444444555555556666666665 4
Q ss_pred hhhHHHHHHHHHH
Q 018386 210 WNTEISRLTQELE 222 (357)
Q Consensus 210 k~eeIs~L~~eLe 222 (357)
.++.+-.+.++|.
T Consensus 117 ~Kek~~~i~~eLd 129 (155)
T 2efr_A 117 QKLKYKAISEEMK 129 (155)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 4555555555544
No 114
>1tu3_F RAB GTPase binding effector protein 1; rabaptin5, effector-binding, protein transport; HET: GNP; 2.31A {Homo sapiens} SCOP: h.1.27.2
Probab=27.25 E-value=43 Score=26.82 Aligned_cols=52 Identities=15% Similarity=0.223 Sum_probs=29.3
Q ss_pred HHHHHhhhhhhhhhHHHHHHHHHHhhhhcccchhhHHHHHHHHHHHHHhhcC
Q 018386 178 STEQLQLSNNEKDETIAKLKTQIAQMETGSKKWNTEISRLTQELELLRKSRT 229 (357)
Q Consensus 178 ~~EeLQ~~nqeKDdeI~RLqak~aeMe~~~Kkk~eeIs~L~~eLe~lrk~r~ 229 (357)
..+.|+..+.+--..+.+||+++..+|+--+.-=.=-.-|.-.||.+|.+-+
T Consensus 6 ~k~~Le~~~~e~k~kv~~LQ~eLdtsE~VQrDFVkLSQsLQvqLE~IRqadt 57 (79)
T 1tu3_F 6 AKATVEQLMFEEKNKAQRLQTELDVSEQVQRDFVKLSQTLQVQLERIRQADS 57 (79)
T ss_dssp ---------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 3455666677777888999999998888777665555667788999998755
No 115
>1m1j_B Fibrinogen beta chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_B*
Probab=27.10 E-value=3.4e+02 Score=27.37 Aligned_cols=18 Identities=17% Similarity=0.303 Sum_probs=9.0
Q ss_pred hHHHHHHHHHHHHHhhcC
Q 018386 212 TEISRLTQELELLRKSRT 229 (357)
Q Consensus 212 eeIs~L~~eLe~lrk~r~ 229 (357)
..+..|...++.|...-.
T Consensus 175 ~~~~~l~~ki~~l~~~~~ 192 (464)
T 1m1j_B 175 AVIDSLHKKIQKLENAIA 192 (464)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344455555555554443
No 116
>1uii_A Geminin; human, DNA replication, cell cycle; 2.00A {Homo sapiens} SCOP: h.1.28.1
Probab=26.45 E-value=1.4e+02 Score=23.99 Aligned_cols=34 Identities=26% Similarity=0.359 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHH
Q 018386 168 ANERIEKLLASTEQLQLSNNEKDETIAKLKTQIA 201 (357)
Q Consensus 168 AtE~iqKL~q~~EeLQ~~nqeKDdeI~RLqak~a 201 (357)
=.-+...-++.++.|+.....++++|..|+.+..
T Consensus 37 RR~AL~eaL~EN~~Lh~~ie~l~eEi~~lk~en~ 70 (83)
T 1uii_A 37 RRKALYEALKENEKLHKEIEQKDNEIARLKKENK 70 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3345566777888888777778888888877765
No 117
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=26.44 E-value=1.1e+02 Score=22.14 Aligned_cols=33 Identities=21% Similarity=0.314 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHh
Q 018386 170 ERIEKLLASTEQLQLSNNEKDETIAKLKTQIAQ 202 (357)
Q Consensus 170 E~iqKL~q~~EeLQ~~nqeKDdeI~RLqak~ae 202 (357)
+.++.|...++.|...|..=..+|..|+.++..
T Consensus 22 ~~~~~Le~~~~~L~~~n~~L~~~i~~L~~e~~~ 54 (61)
T 1t2k_D 22 VWVQSLEKKAEDLSSLNGQLQSEVTLLRNEVAQ 54 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456777777777777777666777777766653
No 118
>2e7s_A RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 3.00A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=25.72 E-value=2.5e+02 Score=24.16 Aligned_cols=49 Identities=18% Similarity=0.144 Sum_probs=30.2
Q ss_pred HHhhhhhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHhh
Q 018386 155 TSKINSKRAEVDRANERIEKLLASTEQLQLSNNEKDETIAKLKTQIAQM 203 (357)
Q Consensus 155 t~lLK~K~~EvaQAtE~iqKL~q~~EeLQ~~nqeKDdeI~RLqak~aeM 203 (357)
++++..-+.=|+.|.-.-..+...+++|+..-.+|+.-|..||..++++
T Consensus 81 asLFeEAN~MVa~ar~~~~~~e~r~~~L~~ql~e~e~ll~~lq~QL~~L 129 (135)
T 2e7s_A 81 ASLFDEANNLVADARMEKYAIEILNKRLTEQLREKDMLLDTLTLQLKNL 129 (135)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHTTTHHHHCC----------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555555777777778888899999988999999999999888743
No 119
>3m9b_A Proteasome-associated ATPase; coil COIL with 5 beta-strand barrel inter domain, chaperone; 3.94A {Mycobacterium tuberculosis} PDB: 3m9d_A
Probab=25.45 E-value=72 Score=29.99 Aligned_cols=25 Identities=16% Similarity=0.225 Sum_probs=19.1
Q ss_pred hhhcccchhhHHHHHHHHHHHHHhh
Q 018386 203 METGSKKWNTEISRLTQELELLRKS 227 (357)
Q Consensus 203 Me~~~Kkk~eeIs~L~~eLe~lrk~ 227 (357)
+....+..+.||.+|..||+.|++.
T Consensus 73 L~~~Lk~ar~El~~LkeElerL~sP 97 (251)
T 3m9b_A 73 LMETLKEARQQLLALREEVDRLGQP 97 (251)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 3334448889999999999999864
No 120
>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A
Probab=25.42 E-value=2.5e+02 Score=22.13 Aligned_cols=38 Identities=21% Similarity=0.400 Sum_probs=27.5
Q ss_pred hhhHHHHHHHHHHhhhhcccchhhHHHHHHHHHHHHHh
Q 018386 189 KDETIAKLKTQIAQMETGSKKWNTEISRLTQELELLRK 226 (357)
Q Consensus 189 KDdeI~RLqak~aeMe~~~Kkk~eeIs~L~~eLe~lrk 226 (357)
...+|..|+.++..+..+--...-+|..|.++++.+|.
T Consensus 54 ye~~i~~Lr~~i~~~~~ek~~l~~e~dnl~~~~~~~k~ 91 (93)
T 3s4r_A 54 YEEEMRELRRQVDQLTNDKARVEVERDNLAEDIMRLRE 91 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 56778888887776666666667777777777777764
No 121
>1fio_A SSO1 protein; four helix bundle, alpha helix, membrane protein; 2.10A {Saccharomyces cerevisiae} SCOP: a.47.2.1
Probab=24.91 E-value=3e+02 Score=22.85 Aligned_cols=27 Identities=7% Similarity=0.178 Sum_probs=15.9
Q ss_pred hhhhhhhhhhhhhHhhhhhHHHhhhhh
Q 018386 135 AFLDERAFLWNQYKVMENDLTSKINSK 161 (357)
Q Consensus 135 ALlaEKdFVWNQ~k~ME~Dyt~lLK~K 161 (357)
.|-..=--+++.|+..+++|...+|..
T Consensus 88 ~L~~~f~~~~~~fq~~Q~~~~~~~k~~ 114 (196)
T 1fio_A 88 NSRQRFLKLIQDYRIVDSNYKEENKEQ 114 (196)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333334677777777777766654
No 122
>2w6a_A ARF GTPase-activating protein GIT1; PIX, zinc, signaling protein, CAT-1, cytoplasm, ANK repeat, coiled-coil, zinc-finger, metal-binding; 1.40A {Rattus norvegicus}
Probab=24.54 E-value=1.7e+02 Score=22.60 Aligned_cols=33 Identities=15% Similarity=0.446 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHhhhh
Q 018386 166 DRANERIEKLLASTEQLQLSNNEKDETIAKLKTQIAQMET 205 (357)
Q Consensus 166 aQAtE~iqKL~q~~EeLQ~~nqeKDdeI~RLqak~aeMe~ 205 (357)
+.+..+||.|.+- |+.=.+|+.++|.++..+++
T Consensus 23 aaSeAkiQQLmkV-------N~~ls~Elr~mQ~~lq~LQs 55 (63)
T 2w6a_A 23 ATSEAKVQQLMKV-------NSSLSDELRKLQREIHKLQA 55 (63)
T ss_dssp HHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHH
T ss_pred HhhHHHHHHHHHH-------hHhhhHHHHHHHHHHHHHHh
Confidence 3344455555544 44446889999999885554
No 123
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=24.46 E-value=5.7e+02 Score=26.00 Aligned_cols=21 Identities=14% Similarity=0.224 Sum_probs=15.5
Q ss_pred chhhHHHHHHHHHHHHHhhcC
Q 018386 209 KWNTEISRLTQELELLRKSRT 229 (357)
Q Consensus 209 kk~eeIs~L~~eLe~lrk~r~ 229 (357)
--.+++..|..|++.|++...
T Consensus 564 g~~~~~~~~~~ei~~l~~~~~ 584 (592)
T 1f5n_A 564 GFQKESRIMKNEIQDLQTKMR 584 (592)
T ss_dssp TCHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHhhc
Confidence 346678888889998888743
No 124
>3swy_A Cyclic nucleotide-gated cation channel alpha-3; coiled-coil, assembly domain, transport protein; 1.90A {Homo sapiens}
Probab=24.45 E-value=1e+02 Score=22.20 Aligned_cols=42 Identities=26% Similarity=0.397 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHhhhhcccchhhHHHHHHHH
Q 018386 169 NERIEKLLASTEQLQLSNNEKDETIAKLKTQIAQMETGSKKWNTEISRLTQE 220 (357)
Q Consensus 169 tE~iqKL~q~~EeLQ~~nqeKDdeI~RLqak~aeMe~~~Kkk~eeIs~L~~e 220 (357)
-|++.+|..+++.||. ...||-+ |.++--.+.+.+|..|+..
T Consensus 4 Eekv~~Le~~ld~LqT-------r~ArLla---e~~ssq~KlKqRit~lE~~ 45 (46)
T 3swy_A 4 EEKVEQLGSSLDTLQT-------RFARLLA---EYNATQMKMKQRLSQLESQ 45 (46)
T ss_dssp HHHHHHHHHHHHHHHH-------HHHHHHH---HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH-------HHHHHHH---HHHHHHHHHHHHHHHHHhc
Confidence 4778888888888883 3445533 4445555778888888753
No 125
>1wle_A Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bos taurus}
Probab=24.23 E-value=3.7e+02 Score=26.95 Aligned_cols=60 Identities=12% Similarity=0.176 Sum_probs=33.0
Q ss_pred HHHHHHHHHHHHHhhhhhhhhhHHHHHHH-----------HHHhhhhcccchhhHHHHHHHHHHHHHhhcC
Q 018386 170 ERIEKLLASTEQLQLSNNEKDETIAKLKT-----------QIAQMETGSKKWNTEISRLTQELELLRKSRT 229 (357)
Q Consensus 170 E~iqKL~q~~EeLQ~~nqeKDdeI~RLqa-----------k~aeMe~~~Kkk~eeIs~L~~eLe~lrk~r~ 229 (357)
+.-.+++..+++||..-+.--.+|..++. +..++-..++..+++|..|+.++..+.....
T Consensus 77 ~~~r~~~~~~~~l~~~rn~~sk~i~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~i~~l~~~~~~~~~~l~ 147 (501)
T 1wle_A 77 QELRQLREQIRSLEEEKEAVTEAVRALVVNQDNSQVQQDPQYQSLRARGREIRKQLTLLYPKEAQLEEQFY 147 (501)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCTTGGGCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344455555555544444555555432 3334555566667777777777666665554
No 126
>2wvr_A Geminin; DNA replication license, DNA replication inhibitor, phosphoprotein, UBL conjugation, DNA-binding, polymorphism; HET: DNA; 3.30A {Homo sapiens}
Probab=24.11 E-value=1.8e+02 Score=26.80 Aligned_cols=39 Identities=23% Similarity=0.323 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHhhhhc
Q 018386 168 ANERIEKLLASTEQLQLSNNEKDETIAKLKTQIAQMETG 206 (357)
Q Consensus 168 AtE~iqKL~q~~EeLQ~~nqeKDdeI~RLqak~aeMe~~ 206 (357)
=.-+...-++.++.|+.....++++|.+|+.+..++..+
T Consensus 106 RR~AL~eaLeEN~~Lh~~ie~l~eEi~~LkeEn~eLkeL 144 (209)
T 2wvr_A 106 RRKALYEALKENEKLHKEIEQKDNEIARLKKENKELAEV 144 (209)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344556677888888888888999999998876544333
No 127
>3a5t_A Transcription factor MAFG; protein-DNA complex, BZIP factor, acetylation, DNA-binding, isopeptide bond, nucleus; 2.80A {Mus musculus}
Probab=24.07 E-value=25 Score=29.19 Aligned_cols=53 Identities=19% Similarity=0.231 Sum_probs=41.9
Q ss_pred HHHHHHHHHhhhhhhhhhHHHHHHHHHHhhhhcccchhhHHHHHHHHHHHHHh
Q 018386 174 KLLASTEQLQLSNNEKDETIAKLKTQIAQMETGSKKWNTEISRLTQELELLRK 226 (357)
Q Consensus 174 KL~q~~EeLQ~~nqeKDdeI~RLqak~aeMe~~~Kkk~eeIs~L~~eLe~lrk 226 (357)
--++|=.-.|..-.+|-++|..|+.++..|.........|...|..|++.|+.
T Consensus 41 R~lKNR~yAq~CR~rk~~~~~~LE~e~~~L~~e~e~L~~En~~l~~E~~~lk~ 93 (107)
T 3a5t_A 41 RTLKNRGYAASCRVKRVTQKEELEKQKAELQQEVEKLASENASMKLELDALRS 93 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSSTTTTTTSTTSHHHHTTTSSSS
T ss_pred HhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556666678888888899999999988888888888888888888776653
No 128
>2yko_A LINE-1 ORF1P; RNA-binding protein, genome evolution, nucleic acid chaperon coiled-coil; HET: MSE; 2.10A {Homo sapiens} PDB: 2ykp_A 2ykq_A 2ldy_A
Probab=23.85 E-value=75 Score=29.56 Aligned_cols=49 Identities=12% Similarity=0.202 Sum_probs=41.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHhhhhcccchh
Q 018386 163 AEVDRANERIEKLLASTEQLQLSNNEKDETIAKLKTQIAQMETGSKKWN 211 (357)
Q Consensus 163 ~EvaQAtE~iqKL~q~~EeLQ~~nqeKDdeI~RLqak~aeMe~~~Kkk~ 211 (357)
.-|+.+-|.|..|-..++++..+.+++...|.+++..+.+++-..+..+
T Consensus 6 sRvd~~EErIs~le~rleei~q~eq~~ekrik~ne~sL~dL~d~iRr~N 54 (233)
T 2yko_A 6 SRCDQLEERVSAAEDEINEIKREGKFREKRIKRNEQSLQEIWDYVKRPN 54 (233)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTE
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccc
Confidence 4577888999999999999998999999999999999988877666554
No 129
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=23.84 E-value=34 Score=25.94 Aligned_cols=13 Identities=15% Similarity=0.215 Sum_probs=5.4
Q ss_pred chhhHHHHHHHHH
Q 018386 209 KWNTEISRLTQEL 221 (357)
Q Consensus 209 kk~eeIs~L~~eL 221 (357)
+...++..|...|
T Consensus 65 ~L~~~~~~L~~~l 77 (83)
T 1nkp_B 65 DLKRQNALLEQQV 77 (83)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3334444444444
No 130
>4e61_A Protein BIM1; EB1-like motif, coiled-coil, spindle orientation, mitosis, K phosphorylation, mitotic spindle, microtubules, cell cycle; 2.45A {Saccharomyces cerevisiae}
Probab=23.61 E-value=1.3e+02 Score=25.12 Aligned_cols=34 Identities=21% Similarity=0.307 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHhcCCCCCCcchhhHHhhhhhhhhhhhhhHhhh
Q 018386 108 QLADFMAWFDLLRQKPKDGEPKSIEVSAFLDERAFLWNQYKVME 151 (357)
Q Consensus 108 eL~DFka~~~~L~~~lke~SeKdkEVsALlaEKdFVWNQ~k~ME 151 (357)
++.++...+..|+ ..|..|-.||||.||-|+-+|
T Consensus 19 ei~~L~~ei~eLk----------~~ve~lEkERDFYF~KLRdIE 52 (106)
T 4e61_A 19 TIGSLNEEIEQYK----------GTVSTLEIEREFYFNKLRDIE 52 (106)
T ss_dssp HHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHH
Confidence 4555555555543 346668889999999887666
No 131
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=23.55 E-value=1.2e+02 Score=23.33 Aligned_cols=17 Identities=24% Similarity=0.585 Sum_probs=10.6
Q ss_pred chhhHHHHHHHHHHHHH
Q 018386 209 KWNTEISRLTQELELLR 225 (357)
Q Consensus 209 kk~eeIs~L~~eLe~lr 225 (357)
.....|..|..||+.+|
T Consensus 54 ~Lr~~i~~L~~El~~lr 70 (70)
T 1gd2_E 54 QLRQKVRQLEEELRILK 70 (70)
T ss_dssp HHTTHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHcC
Confidence 44666777777776553
No 132
>2b5u_A Colicin E3; high resolution colicin E3, ribosome inactivation, ribosome inhibitor, hydrolase; HET: CIT; 2.30A {Escherichia coli} SCOP: b.101.1.1 b.110.1.1 h.4.9.1 PDB: 1jch_A* 1ujw_B* 2ysu_B 1e44_B 2xfz_Y* 2xg1_Y*
Probab=23.24 E-value=6.5e+02 Score=26.19 Aligned_cols=105 Identities=15% Similarity=0.184 Sum_probs=46.8
Q ss_pred HHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhHHHH---HHhHHhHHHHHH-HHHHHHHhhhhhh
Q 018386 13 RQKRDKI-LVKMLKSQQEQIETLVKEREILEDHLKMQHEKWVSDVRLYEDH---ISQMKSEIVAQE-LIHLLDAAKSDMV 87 (357)
Q Consensus 13 r~~W~ri-LVkMLr~~q~QvEsL~~ER~~LEa~ik~QhE~W~sdv~~lqdr---Lsqm~~el~~eE-~~~~~EaAk~~l~ 87 (357)
+++|+.- =+ --...++|..-+|..+-+.-+..++|+-..-+.+|+.+ |+.+++.+-+-. -+.-...+.-+.+
T Consensus 307 ~qew~~~hp~---~~Aer~~e~a~ael~~a~k~~a~~~er~~~t~~~~~~~~~~~~~~n~~~~~~~~~~~~f~~~n~~p~ 383 (551)
T 2b5u_A 307 QQEWDATHPV---EAAERNYERARAELNQANEDVARNQERQAKAVQVYNSRKSELDAANKTLADAIAEIKQFNRFAHDPM 383 (551)
T ss_dssp HHHHHHHCHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGTTCTT
T ss_pred HHHhhhcCcH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhhhHHHHHHHhhhhhhhhccChh
Confidence 4677766 22 22333455555566655666666666444445555432 222222111100 0111111111122
Q ss_pred hchhhHHHHHHHHHhhhchhHHHHHHHHHHHHhc
Q 018386 88 VGLKLREASLLKLMLEYTDDQLADFMAWFDLLRQ 121 (357)
Q Consensus 88 LGlK~RE~~l~k~~lE~teDeL~DFka~~~~L~~ 121 (357)
-+. |+=--+.-+.+..+..||...+|.|+.++.
T Consensus 384 ~~G-h~~w~~~~~~~~~~~~dv~~~~a~~d~~~~ 416 (551)
T 2b5u_A 384 AGG-HRMWQMAGLKAQRAQTDVNNKQAAFDAAAK 416 (551)
T ss_dssp STH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hcc-chhhhhccchhhhhhhhhhhHHHHHHHHhh
Confidence 222 222222335666666677777777777644
No 133
>3lss_A Seryl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, serrs, translation, ATP-binding, nucleotide-binding, structural genomics; HET: ATP; 1.95A {Trypanosoma brucei} PDB: 3lsq_A*
Probab=23.05 E-value=1.6e+02 Score=29.51 Aligned_cols=28 Identities=18% Similarity=0.170 Sum_probs=14.9
Q ss_pred HHH-HHhhhhcccchhhHHHHHHHHHHHH
Q 018386 197 KTQ-IAQMETGSKKWNTEISRLTQELELL 224 (357)
Q Consensus 197 qak-~aeMe~~~Kkk~eeIs~L~~eLe~l 224 (357)
.++ +.++....+..+++...++.+|+.+
T Consensus 109 ~~~~~~~l~~~i~~le~~~~~~~~~~~~~ 137 (484)
T 3lss_A 109 LKQLSKDLSDQVAGLAKEAQQLEEERDKL 137 (484)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445 5545455555555555555555443
No 134
>2ve7_C Kinetochore protein NUF2, kinetochore protein SPC; mitosis, centromere, cell cycle, microtubule, C division, calponin homology; 2.88A {Homo sapiens} PDB: 3iz0_D*
Probab=22.39 E-value=52 Score=30.09 Aligned_cols=46 Identities=11% Similarity=0.013 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHhhhhcccch
Q 018386 165 VDRANERIEKLLASTEQLQLSNNEKDETIAKLKTQIAQMETGSKKW 210 (357)
Q Consensus 165 vaQAtE~iqKL~q~~EeLQ~~nqeKDdeI~RLqak~aeMe~~~Kkk 210 (357)
.....+..+.+.+.+++||..+++=..+|.+|+.++.++++.+-..
T Consensus 143 ~~e~~~~~e~~~~~i~ql~~En~~le~~Ie~Lk~e~~e~~te~~p~ 188 (250)
T 2ve7_C 143 YMEFLWQYKSSADKMQQLNAAHQEALMKLERLEKEVDEDTTVTIPS 188 (250)
T ss_dssp HHHHHHHTTHHHHHHHHHHHHHHHHHHSCC-------------CTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHH
Confidence 3344444455555566666555554445555555555444443333
No 135
>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A
Probab=22.38 E-value=3.8e+02 Score=23.22 Aligned_cols=32 Identities=22% Similarity=0.326 Sum_probs=23.4
Q ss_pred HHHhhhhhHHHHHHHHHHHHHHHHHHHHHhhh
Q 018386 154 LTSKINSKRAEVDRANERIEKLLASTEQLQLS 185 (357)
Q Consensus 154 yt~lLK~K~~EvaQAtE~iqKL~q~~EeLQ~~ 185 (357)
++..||.-+.-+..|--.+++|+..++.|...
T Consensus 82 L~~kLKEAE~RAE~AERsv~kLEk~id~lEd~ 113 (155)
T 2efr_A 82 LSDKLKEAETRAEFAERSVTKLEKSIDDLEDE 113 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566666667777778888888888888633
No 136
>1ytz_I Troponin I; muscle, THIN filament, actin binding, calcium, contractIle protein; HET: DR6; 3.00A {Gallus gallus} SCOP: h.1.25.2 PDB: 2w49_2 2w4u_2 1yv0_I 1vdi_A 1vdj_A
Probab=22.20 E-value=1e+02 Score=27.78 Aligned_cols=61 Identities=26% Similarity=0.255 Sum_probs=52.2
Q ss_pred HHHHHhhhhhhhhhHHHHHHHHHHhhhhcccchhhHHHHHHHHHHHHHhhcCCCCccccccccc
Q 018386 178 STEQLQLSNNEKDETIAKLKTQIAQMETGSKKWNTEISRLTQELELLRKSRTASDTPVLNRCTR 241 (357)
Q Consensus 178 ~~EeLQ~~nqeKDdeI~RLqak~aeMe~~~Kkk~eeIs~L~~eLe~lrk~r~a~~tpvl~~ct~ 241 (357)
+.++||...++--+.|..|..+-=.+|.-+++.+-||..|...+..|| +.-.-|.|.+-..
T Consensus 56 se~~L~e~ckELh~~I~~LEeEKYDlE~kvkkq~yEI~dL~~rVnDLr---GKfkKP~LkkV~~ 116 (182)
T 1ytz_I 56 SMQELQELSKKLHAKIDSVDEERYDTEVKLQKTNKELEDLSQKLFDLR---GKFKRPPLRRVRM 116 (182)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTGGGT---CSCSSCSSCCCCC
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhHHHHHHHHHHHHHH---hhhcccchhhccc
Confidence 788899999999999999999988899999999999999998888775 4456788887665
No 137
>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}
Probab=22.06 E-value=3.5e+02 Score=22.68 Aligned_cols=40 Identities=28% Similarity=0.273 Sum_probs=27.2
Q ss_pred hhhhHhhhhhHHHhhhhhHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 018386 144 WNQYKVMENDLTSKINSKRAEVDRANERIEKLLASTEQLQLSNN 187 (357)
Q Consensus 144 WNQ~k~ME~Dyt~lLK~K~~EvaQAtE~iqKL~q~~EeLQ~~nq 187 (357)
=-|..+-..||-+ -...-+.+++.++.|+..++.||..++
T Consensus 68 kaQv~IY~~DF~a----ERadREkl~~eKe~L~~ql~~Lq~q~~ 107 (110)
T 2v4h_A 68 KAQADIYKADFQA----ERHAREKLVEKKEYLQEQLEQLQREFN 107 (110)
T ss_dssp HHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcc----chhhHHHHHhHHHHHHHHHHHHHHHHH
Confidence 3477888888862 223445677777888888888876654
No 138
>3qh9_A Liprin-beta-2; coiled-coil, dimerization, structural protein; 2.01A {Homo sapiens}
Probab=21.76 E-value=2.9e+02 Score=22.16 Aligned_cols=20 Identities=35% Similarity=0.434 Sum_probs=13.5
Q ss_pred HhhhhhhhhhHHHHHHHHHH
Q 018386 182 LQLSNNEKDETIAKLKTQIA 201 (357)
Q Consensus 182 LQ~~nqeKDdeI~RLqak~a 201 (357)
||..-..||.+|.||+.++.
T Consensus 59 Lq~qLe~kd~ei~rL~~~l~ 78 (81)
T 3qh9_A 59 LQEQVALKDAEIERLHSQLS 78 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHhhHHHHHHHHHHHh
Confidence 34444567888888888763
No 139
>1gmj_A ATPase inhibitor; coiled-coil structure, P dependent oligomerization, ATP hydrolysis; 2.2A {Bos taurus} SCOP: h.4.8.1 PDB: 1ohh_H* 1hf9_A
Probab=21.37 E-value=2.5e+02 Score=22.51 Aligned_cols=12 Identities=17% Similarity=0.354 Sum_probs=5.2
Q ss_pred hhHHHHHHHHHH
Q 018386 190 DETIAKLKTQIA 201 (357)
Q Consensus 190 DdeI~RLqak~a 201 (357)
.++|..-+.++.
T Consensus 50 ~~el~~h~~ei~ 61 (84)
T 1gmj_A 50 ENEISHHAKEIE 61 (84)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 344444444443
No 140
>2dq3_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, nationa on protein structural and functional analyses; HET: SSA; 3.00A {Aquifex aeolicus}
Probab=21.18 E-value=1.2e+02 Score=29.44 Aligned_cols=70 Identities=11% Similarity=0.216 Sum_probs=34.6
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHhhhh-h--hhhhHHHHHHHHHHhhhhcccchhhHHHHHHHHHHHHHh
Q 018386 157 KINSKRAEVDRANERIEKLLASTEQLQLSN-N--EKDETIAKLKTQIAQMETGSKKWNTEISRLTQELELLRK 226 (357)
Q Consensus 157 lLK~K~~EvaQAtE~iqKL~q~~EeLQ~~n-q--eKDdeI~RLqak~aeMe~~~Kkk~eeIs~L~~eLe~lrk 226 (357)
.|..-+.+-.++...++.|++..+.+...- + .+.++...|.+++.++....+..+++...++.+|+.+-.
T Consensus 31 ~~~~~~~~~r~~~~~~~~l~~~~n~~sk~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 103 (425)
T 2dq3_A 31 KVLELDKRRREIIKRLEALRSERNKLSKEIGKLKREGKDTTEIQNRVKELKEEIDRLEEELRKVEEELKNTLL 103 (425)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTGGGSSCSCTTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333344444444444444443211 1 112334455566666666666666677777777765544
No 141
>1t6f_A Geminin; coiled-coil, cell cycle; 1.47A {Synthetic} SCOP: h.1.28.1
Probab=21.01 E-value=1.1e+02 Score=21.51 Aligned_cols=24 Identities=17% Similarity=0.363 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhh
Q 018386 162 RAEVDRANERIEKLLASTEQLQLS 185 (357)
Q Consensus 162 ~~EvaQAtE~iqKL~q~~EeLQ~~ 185 (357)
+.++.|-.|.|+.|.+.+++|+..
T Consensus 13 hk~ie~KdeeIa~Lk~eN~eL~El 36 (37)
T 1t6f_A 13 HKEIEQKDNEIARLKKENKELAEV 36 (37)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHhhHHHHhh
Confidence 567888899999999999999854
No 142
>3efg_A Protein SLYX homolog; xanthomonas campestris PV. campestris, coiled-coil, structur genomics, PSI-2, protein structure initiative; 2.00A {Xanthomonas campestris PV}
Probab=20.55 E-value=2.4e+02 Score=21.77 Aligned_cols=30 Identities=13% Similarity=0.185 Sum_probs=16.8
Q ss_pred hhHHHHHHHHHHhhhhcccchhhHHHHHHHHHHHHHh
Q 018386 190 DETIAKLKTQIAQMETGSKKWNTEISRLTQELELLRK 226 (357)
Q Consensus 190 DdeI~RLqak~aeMe~~~Kkk~eeIs~L~~eLe~lrk 226 (357)
++.|..|..-++ +-..+|.+|...|..|..
T Consensus 27 E~tIeeLn~~v~-------~Qq~~Id~L~~ql~~L~~ 56 (78)
T 3efg_A 27 EQALTELSEALA-------DARLTGARNAELIRHLLE 56 (78)
T ss_dssp HHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHH
Confidence 555555555555 444556666666666543
No 143
>1lwu_B Fibrinogen beta chain; heterotrimer, protein-peptide complex, blood clotting; HET: NDG MAN NAG BMA GAL; 2.80A {Petromyzon marinus} SCOP: d.171.1.1 h.1.8.1 PDB: 1n73_B*
Probab=20.36 E-value=1.1e+02 Score=29.26 Aligned_cols=18 Identities=6% Similarity=0.350 Sum_probs=10.5
Q ss_pred chhhHHHHHHHHHHHHHh
Q 018386 209 KWNTEISRLTQELELLRK 226 (357)
Q Consensus 209 kk~eeIs~L~~eLe~lrk 226 (357)
..+++|..|+..+..+..
T Consensus 39 ~L~~KI~~LE~~v~~q~~ 56 (323)
T 1lwu_B 39 HLRAKMQRMEEAIKTQKE 56 (323)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 445666666666655443
No 144
>1ykh_B RNA polymerase II holoenzyme component SRB7; gene regulation; 3.00A {Saccharomyces cerevisiae} SCOP: a.252.1.1
Probab=20.28 E-value=2.1e+02 Score=23.85 Aligned_cols=54 Identities=19% Similarity=0.284 Sum_probs=34.0
Q ss_pred HHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHhhhhcccchhhHHHHHHHHHHH
Q 018386 170 ERIEKLLASTEQLQLSNNEKDETIAKLKTQIAQMETGSKKWNTEISRLTQELEL 223 (357)
Q Consensus 170 E~iqKL~q~~EeLQ~~nqeKDdeI~RLqak~aeMe~~~Kkk~eeIs~L~~eLe~ 223 (357)
-.|..|...+=.+.++..+=...|.+|+.+..+.+....++=.+-..|-..++.
T Consensus 71 kqIe~LIdsLP~~~~see~Q~~ri~~L~~E~~~~~~el~~~v~e~e~ll~~v~~ 124 (132)
T 1ykh_B 71 RQINKLIDSLPGVDVSAEEQLRKIDMLQKKLVEVEDEKIEAIKKKEKLMRHVDS 124 (132)
T ss_dssp HHHHHHHHHSTTTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345667766666666666667888888888876665555544444444444443
No 145
>2z5i_A TM, general control protein GCN4 and tropomyosin alpha-1 chain; coiled coil, actin, troponin, cytoskeleton, cardiomyopathy; 2.10A {Saccharomyces cerevisiae} PDB: 2z5h_A 1kql_A 1mv4_A 2g9j_C
Probab=20.03 E-value=2.5e+02 Score=20.20 Aligned_cols=40 Identities=10% Similarity=0.176 Sum_probs=24.0
Q ss_pred HHHHHHhhhhhhhhhHHHHHHHHHHhhhhcccchhhHHHHHHHHHHH
Q 018386 177 ASTEQLQLSNNEKDETIAKLKTQIAQMETGSKKWNTEISRLTQELEL 223 (357)
Q Consensus 177 q~~EeLQ~~nqeKDdeI~RLqak~aeMe~~~Kkk~eeIs~L~~eLe~ 223 (357)
--.|-...++++-.-+|++|++++. ..+++.-.+.++|..
T Consensus 5 ~~aefAERsV~KLek~ID~LEdeL~-------~eKek~~~i~~eLD~ 44 (52)
T 2z5i_A 5 SKNYHLENEVARLKKLVDDLEDELY-------AQKLKYKAISEELDH 44 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-------HhHHHHHHHHHHHHH
Confidence 3345555566666667777777765 345555556666554
Done!