Query 018386
Match_columns 357
No_of_seqs 22 out of 24
Neff 2.8
Searched_HMMs 13730
Date Mon Mar 25 14:27:08 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018386.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/018386hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1fxka_ a.2.5.1 (A:) Prefoldin 69.3 11 0.00077 28.1 8.0 41 187-227 61-101 (107)
2 d1seta1 a.2.7.1 (A:1-110) Sery 48.6 45 0.0033 24.3 8.4 58 167-224 39-97 (110)
3 d1seta1 a.2.7.1 (A:1-110) Sery 33.9 27 0.002 25.6 4.8 63 165-227 30-93 (110)
4 d1wu9a1 a.245.1.1 (A:191-249) 27.6 13 0.00095 26.3 1.8 20 132-151 16-35 (59)
5 d1rq0a_ e.38.1.1 (A:) Peptide 27.0 48 0.0035 29.5 6.1 27 128-154 3-29 (333)
6 d1nkpa_ a.38.1.1 (A:) Myc prot 20.2 1.1E+02 0.0083 21.3 6.0 24 160-183 42-65 (88)
7 d1nlwa_ a.38.1.1 (A:) Mad prot 19.4 1.2E+02 0.0085 20.8 5.8 25 160-184 37-61 (79)
8 d1ykhb1 a.252.1.1 (B:2-130) RN 17.9 1.1E+02 0.0083 23.5 5.9 56 168-223 68-123 (129)
9 d1io1a_ e.32.1.1 (A:) Phase 1 17.7 1.2E+02 0.0086 23.7 6.1 59 165-237 22-83 (395)
10 d1fioa_ a.47.2.1 (A:) Sso1 {Ba 17.5 1.8E+02 0.013 21.3 13.2 30 132-161 85-114 (196)
No 1
>d1fxka_ a.2.5.1 (A:) Prefoldin beta subunit {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}
Probab=69.34 E-value=11 Score=28.06 Aligned_cols=41 Identities=17% Similarity=0.303 Sum_probs=35.6
Q ss_pred hhhhhHHHHHHHHHHhhhhcccchhhHHHHHHHHHHHHHhh
Q 018386 187 NEKDETIAKLKTQIAQMETGSKKWNTEISRLTQELELLRKS 227 (357)
Q Consensus 187 qeKDdeI~RLqak~aeMe~~~Kkk~eeIs~L~~eLe~lrk~ 227 (357)
+.+++-+..|+.++..++...+..+..+..|..+++.+++.
T Consensus 61 ~~~~e~~~~l~~~~e~l~~~i~~l~~q~~~l~~~l~~~~~~ 101 (107)
T d1fxka_ 61 VAKDELTEELQEKLETLQLREKTIERQEERVMKKLQEMQVN 101 (107)
T ss_dssp ECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67888899999999989888888888888999888888764
No 2
>d1seta1 a.2.7.1 (A:1-110) Seryl-tRNA synthetase (SerRS) {Thermus thermophilus, strain hb27 [TaxId: 274]}
Probab=48.56 E-value=45 Score=24.30 Aligned_cols=58 Identities=14% Similarity=0.189 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHHHHHHh-hhhhhhhhHHHHHHHHHHhhhhcccchhhHHHHHHHHHHHH
Q 018386 167 RANERIEKLLASTEQLQ-LSNNEKDETIAKLKTQIAQMETGSKKWNTEISRLTQELELL 224 (357)
Q Consensus 167 QAtE~iqKL~q~~EeLQ-~~nqeKDdeI~RLqak~aeMe~~~Kkk~eeIs~L~~eLe~l 224 (357)
.....++.|++..+.+- ....-+.++...|.+++.++....++..++...++.++..+
T Consensus 39 ~l~~~~e~l~~~rN~~sk~i~k~~~~~~~~l~~~~k~lk~~i~~le~~~~~~~~~l~~~ 97 (110)
T d1seta1 39 ELKKRLQEVQTERNQVAKRVPKAPPEEKEALIARGKALGEEAKRLEEALREKEARLEAL 97 (110)
T ss_dssp HHHHHHHHHHHHHHHHHHHGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444442 22344556666777777755555555555555555555544
No 3
>d1seta1 a.2.7.1 (A:1-110) Seryl-tRNA synthetase (SerRS) {Thermus thermophilus, strain hb27 [TaxId: 274]}
Probab=33.91 E-value=27 Score=25.61 Aligned_cols=63 Identities=14% Similarity=0.192 Sum_probs=34.9
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHH-HHHhhhhcccchhhHHHHHHHHHHHHHhh
Q 018386 165 VDRANERIEKLLASTEQLQLSNNEKDETIAKLKT-QIAQMETGSKKWNTEISRLTQELELLRKS 227 (357)
Q Consensus 165 vaQAtE~iqKL~q~~EeLQ~~nqeKDdeI~RLqa-k~aeMe~~~Kkk~eeIs~L~~eLe~lrk~ 227 (357)
+...-+.-.+|+..++.|+..-+.-..+|++++. ...++-..++..+++|..|+.++..+-..
T Consensus 30 i~~ld~~rr~l~~~~e~l~~~rN~~sk~i~k~~~~~~~~l~~~~k~lk~~i~~le~~~~~~~~~ 93 (110)
T d1seta1 30 LLALDREVQELKKRLQEVQTERNQVAKRVPKAPPEEKEALIARGKALGEEAKRLEEALREKEAR 93 (110)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455666666667776665555555654422 23334445555566666666666655443
No 4
>d1wu9a1 a.245.1.1 (A:191-249) Microtubule-associated protein EB1, C-terminal dimerization domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=27.55 E-value=13 Score=26.28 Aligned_cols=20 Identities=25% Similarity=0.501 Sum_probs=16.9
Q ss_pred hHHhhhhhhhhhhhhhHhhh
Q 018386 132 EVSAFLDERAFLWNQYKVME 151 (357)
Q Consensus 132 EVsALlaEKdFVWNQ~k~ME 151 (357)
-|..|-+||||.||-++-+|
T Consensus 16 ~v~~lEkERdFYF~KLRdIE 35 (59)
T d1wu9a1 16 TVEDLEKERDFYFGKLRNIE 35 (59)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 46678889999999998887
No 5
>d1rq0a_ e.38.1.1 (A:) Peptide chain release factor 1, RF1 {Thermotoga maritima [TaxId: 2336]}
Probab=27.02 E-value=48 Score=29.50 Aligned_cols=27 Identities=19% Similarity=0.146 Sum_probs=18.0
Q ss_pred cchhhHHhhhhhhhhhhhhhHhhhhhH
Q 018386 128 PKSIEVSAFLDERAFLWNQYKVMENDL 154 (357)
Q Consensus 128 eKdkEVsALlaEKdFVWNQ~k~ME~Dy 154 (357)
++-.|+.++++.-+|.=+|++.+-+.|
T Consensus 3 ~r~~eLe~~l~dPd~~~d~~~~lske~ 29 (333)
T d1rq0a_ 3 EKKKEIEKLLARPDLTPEQMKNYGMEY 29 (333)
T ss_dssp TTTTHHHHHHHSSCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCCHHHHHHHHHHH
Confidence 567899999999998334454444433
No 6
>d1nkpa_ a.38.1.1 (A:) Myc proto-oncogene protein {Human (Homo sapiens) [TaxId: 9606]}
Probab=20.24 E-value=1.1e+02 Score=21.27 Aligned_cols=24 Identities=21% Similarity=0.202 Sum_probs=15.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHh
Q 018386 160 SKRAEVDRANERIEKLLASTEQLQ 183 (357)
Q Consensus 160 ~K~~EvaQAtE~iqKL~q~~EeLQ 183 (357)
+|-.-...|.+-|..|++.++.|.
T Consensus 42 sK~~iL~~A~~yI~~L~~~~~~l~ 65 (88)
T d1nkpa_ 42 PKVVILKKATAYILSVQAEEQKLI 65 (88)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344556667777777777666654
No 7
>d1nlwa_ a.38.1.1 (A:) Mad protein {Human (Homo sapiens) [TaxId: 9606]}
Probab=19.38 E-value=1.2e+02 Score=20.77 Aligned_cols=25 Identities=20% Similarity=0.162 Sum_probs=15.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhh
Q 018386 160 SKRAEVDRANERIEKLLASTEQLQL 184 (357)
Q Consensus 160 ~K~~EvaQAtE~iqKL~q~~EeLQ~ 184 (357)
+|-.-+..|.+=|..|+..+..|..
T Consensus 37 sK~~iL~~A~~yI~~L~~~~~~l~~ 61 (79)
T d1nlwa_ 37 TTLSLLTKAKLHIKKLEDSDRKAVH 61 (79)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445566677777777766655543
No 8
>d1ykhb1 a.252.1.1 (B:2-130) RNA polymerase II holoenzyme component SRB7 (MED21) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=17.92 E-value=1.1e+02 Score=23.50 Aligned_cols=56 Identities=18% Similarity=0.275 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHhhhhcccchhhHHHHHHHHHHH
Q 018386 168 ANERIEKLLASTEQLQLSNNEKDETIAKLKTQIAQMETGSKKWNTEISRLTQELEL 223 (357)
Q Consensus 168 AtE~iqKL~q~~EeLQ~~nqeKDdeI~RLqak~aeMe~~~Kkk~eeIs~L~~eLe~ 223 (357)
+.-.|..|...+=...++..+-...|.+|+.++.+.+....++=.+-..|-..++.
T Consensus 68 kakqId~LI~sLP~~~~see~Q~~~i~~Le~E~~~~~~el~~~v~e~e~ll~~i~~ 123 (129)
T d1ykhb1 68 KTRQINKLIDSLPGVDVSAEEQLRKIDMLQKKLVEVEDEKIEAIKKKEKLMRHVDS 123 (129)
T ss_dssp HHHHHHHHHHHSTTTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhhHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344555554433344444445667777777665554444444444444444443
No 9
>d1io1a_ e.32.1.1 (A:) Phase 1 flagellin {Salmonella typhimurium [TaxId: 90371]}
Probab=17.74 E-value=1.2e+02 Score=23.71 Aligned_cols=59 Identities=19% Similarity=0.259 Sum_probs=34.2
Q ss_pred HHHHHHHHHHHHHHHHHH--hhhhhhh-hhHHHHHHHHHHhhhhcccchhhHHHHHHHHHHHHHhhcCCCCccccc
Q 018386 165 VDRANERIEKLLASTEQL--QLSNNEK-DETIAKLKTQIAQMETGSKKWNTEISRLTQELELLRKSRTASDTPVLN 237 (357)
Q Consensus 165 vaQAtE~iqKL~q~~EeL--Q~~nqeK-DdeI~RLqak~aeMe~~~Kkk~eeIs~L~~eLe~lrk~r~a~~tpvl~ 237 (357)
++-|-..+..+++.+.|| |+.|.=. +.+..- ...||..|..||-.+-....---..+|.
T Consensus 22 ae~al~~~~~iL~r~reLavqaan~t~~~~dr~a--------------i~~E~~~l~~ei~~ia~~T~fng~~Ll~ 83 (395)
T d1io1a_ 22 TEGALNEINNNLQRVRELAVQSANSTNSQSDLDS--------------IQAEITQRLNEIDRVSGQTQFNGVKVLA 83 (395)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTCTTCCHHHHHH--------------HHHHHHHHHHHHHHHHHHCCBTTBCTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHH--------------HHHHHHHHHHHHHHHHHhCeeCCccccc
Confidence 344556667777778777 5554322 223333 3556678888888776555444444554
No 10
>d1fioa_ a.47.2.1 (A:) Sso1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=17.50 E-value=1.8e+02 Score=21.26 Aligned_cols=30 Identities=7% Similarity=0.183 Sum_probs=19.8
Q ss_pred hHHhhhhhhhhhhhhhHhhhhhHHHhhhhh
Q 018386 132 EVSAFLDERAFLWNQYKVMENDLTSKINSK 161 (357)
Q Consensus 132 EVsALlaEKdFVWNQ~k~ME~Dyt~lLK~K 161 (357)
.+..|...=.=+...|+.+..+|...+|.+
T Consensus 85 ~~~~l~~~l~~~~~~f~~~q~~~~~~~k~~ 114 (196)
T d1fioa_ 85 QAENSRQRFLKLIQDYRIVDSNYKEENKEQ 114 (196)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344454444446777888888888777765
Done!