Query 018387
Match_columns 357
No_of_seqs 205 out of 363
Neff 4.7
Searched_HMMs 46136
Date Fri Mar 29 08:35:39 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018387.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/018387hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF14234 DUF4336: Domain of un 100.0 3.2E-81 6.9E-86 601.0 20.0 246 100-357 1-249 (285)
2 PF14597 Lactamase_B_5: Metall 98.8 1.7E-07 3.6E-12 86.5 14.5 140 98-263 4-144 (199)
3 TIGR03413 GSH_gloB hydroxyacyl 96.5 0.044 9.5E-07 51.9 12.6 120 124-261 13-132 (248)
4 PLN02469 hydroxyacylglutathion 96.0 0.13 2.8E-06 49.4 12.5 116 131-262 23-142 (258)
5 PLN02398 hydroxyacylglutathion 95.0 0.28 6.1E-06 49.1 11.6 115 131-262 98-213 (329)
6 COG0491 GloB Zn-dependent hydr 95.0 0.48 1E-05 42.2 12.0 137 120-261 23-173 (252)
7 PRK10241 hydroxyacylglutathion 94.7 0.43 9.2E-06 45.4 11.6 113 130-261 21-133 (251)
8 PLN02962 hydroxyacylglutathion 94.5 0.31 6.7E-06 46.9 10.0 114 130-260 35-155 (251)
9 smart00849 Lactamase_B Metallo 94.0 0.89 1.9E-05 38.7 10.9 135 119-260 4-147 (183)
10 COG0426 FpaA Uncharacterized f 92.6 1 2.2E-05 46.4 10.5 136 122-271 37-180 (388)
11 PRK11921 metallo-beta-lactamas 92.4 1.7 3.6E-05 43.9 11.7 126 122-257 34-164 (394)
12 PRK05452 anaerobic nitric oxid 91.3 2.1 4.5E-05 44.8 11.4 130 120-260 34-171 (479)
13 PRK11539 ComEC family competen 53.5 2.1E+02 0.0045 31.9 12.8 117 123-256 513-640 (755)
14 PF00753 Lactamase_B: Metallo- 36.4 1.2E+02 0.0027 25.0 6.2 139 119-261 4-151 (194)
15 COG0289 DapB Dihydrodipicolina 33.6 50 0.0011 32.6 3.8 59 130-188 92-155 (266)
16 COG2875 CobM Precorrin-4 methy 33.1 35 0.00075 33.5 2.6 37 123-164 76-112 (254)
17 PF05157 T2SE_Nter: Type II se 27.1 2E+02 0.0044 22.5 5.8 43 121-163 48-92 (109)
18 COG0106 HisA Phosphoribosylfor 24.0 88 0.0019 30.5 3.6 42 142-186 86-127 (241)
19 smart00139 MyTH4 Domain in Myo 23.2 50 0.0011 29.2 1.7 22 302-323 80-101 (144)
20 TIGR00649 MG423 conserved hypo 21.6 2.6E+02 0.0057 28.4 6.7 71 118-189 11-92 (422)
21 PRK09375 quinolinate synthetas 20.5 1.6E+02 0.0034 29.9 4.7 59 127-190 153-216 (319)
No 1
>PF14234 DUF4336: Domain of unknown function (DUF4336)
Probab=100.00 E-value=3.2e-81 Score=600.97 Aligned_cols=246 Identities=48% Similarity=0.914 Sum_probs=234.8
Q ss_pred cCcEEEEeeecccccceeeccceEEEEEEcCCcEEEEcCCCCCHHHHHHHHHh---cCCeeEEEeCCCccccccChHHHH
Q 018387 100 KGRIWLFEQEQALGFSSVSTNIRMTVIKLKSGGLWVHAPIAPTKECIQLVKEL---AAPVEYIILPTFAYEHKIFVGPFS 176 (357)
Q Consensus 100 ~~~IWt~eq~~~i~~~~v~vg~RMTVVRL~dG~L~V~SPValT~E~~~~L~~L---Gg~VkyIVaPn~s~EH~lfl~~w~ 176 (357)
+|+||++||+|++. ++.+|+|||||||++|+|||||||++|+||+++|++| +|+|+|||+||..+|||+|+++|+
T Consensus 1 p~~IW~~eq~~~~~--~v~v~~RMTVVrL~~G~L~VhSPvapT~el~~~l~~L~~~~G~VkyIVaPn~~lEH~lfl~~w~ 78 (285)
T PF14234_consen 1 PDQIWTFEQPQGIF--YVPVPTRMTVVRLSDGGLWVHSPVAPTPELKAELDELEAQHGPVKYIVAPNKGLEHHLFLGPWA 78 (285)
T ss_pred CCcEEEEecccccc--ceeecceEEEEEECCCCEEEECCCCCCHHHHHHHHHHhccCCceeEEEcCCcchhHHHhHHHHH
Confidence 58999999999755 5999999999999999999999999999999999999 349999999997789999999999
Q ss_pred HhCCCCeEEeCCCCcCCCCCCCcceeccccccccCCCCCCCcccCCeeEEEccCCCCCCCCceEEEEEEcCCceEEEecc
Q 018387 177 RKFPRAQIWVAPRQWSWPLNLPLAFFGIFRAKTLIDEDLSTPWADEIEQKVLSSPEVGIGPYVEVAFYHKPSRTLLVTDA 256 (357)
Q Consensus 177 ~~FP~Akv~~~pg~~s~p~~lpl~~~gi~~~~~L~~~~~~~pw~~efd~~~l~~~~~g~~~~~EvvffHKpSkTLIvtDl 256 (357)
++||+|++|+|||+|++|.+++++|.|++.++.+.++....+|++|||+++|++.++|++.|+|++||||+|||||+||+
T Consensus 79 ~afP~A~v~~~Pg~~s~p~~lp~~~~g~~~~~~l~~~~~~~pw~~eid~~~l~~~~lg~~~~~EvvFfHk~SkTLIvTDl 158 (285)
T PF14234_consen 79 RAFPDAKVWAPPGQWSFPLNLPLSWLGIPRDKTLPDDSDPPPWADEIDQEILGPLDLGSGPFQEVVFFHKPSKTLIVTDL 158 (285)
T ss_pred HHCCCCEEEeCCCcccccccCchhhcCCccccccccccCCCCchhheeeEEecccccCCCceeEEEEEECCCCeEEhhhc
Confidence 99999999999999999999999999999888887766788999999999999999999999999999999999999999
Q ss_pred cccCCCCCCcccccchhhhccccchhhhhcccCCCCCCCCCCCChHHHhhhhhhhhhhhhhhCCCCCCCcchhHHhhcCC
Q 018387 257 VIFVPRKPPECISKESLLASAKNGLAVKILSKGKEVPQEPVVDNPMNQQKGWERMVLQILFLGPSNLLEPNASFAQMSQK 336 (357)
Q Consensus 257 l~Nlp~~ppEq~s~~pll~~~~~g~~trll~~~~~~~~~~~~d~~~~r~~GW~r~~lf~~~~~P~~l~~~~~sf~~~~~~ 336 (357)
++|+|+++|++++.+| +++++|+||.++++++||+|+|+|||+|||||++||+|++|++|+.||++|++|
T Consensus 159 l~nip~~~p~~~~~d~----------~pll~~ar~~~~~~~~d~~~~r~~GW~r~~Lf~~y~~P~~l~~~~~sf~~~~~~ 228 (285)
T PF14234_consen 159 LFNIPATPPEIFQLDP----------YPLLFHARDRADEPVEDTPENRRKGWQRMVLFALYFRPSALEVPEASFDALSGR 228 (285)
T ss_pred hhhCCCCCCcccCCCc----------cchhhcccCCCCCCCCCCHHHHhhhHHHHhHhheeeccccccCchhhHHHHhCC
Confidence 9999999999999988 778888899999999999999999999999999999999999999999999999
Q ss_pred eeeCceEeeeecCCCCcccCC
Q 018387 337 LIVSPIVKTLVFSKVPEKGLD 357 (357)
Q Consensus 337 l~v~Pil~~lv~~~~~~~~~~ 357 (357)
|+||||||||||+|+|++|++
T Consensus 229 l~vaPil~~Lv~~r~~~~~~~ 249 (285)
T PF14234_consen 229 LFVAPILQTLVFPRAPEEVLA 249 (285)
T ss_pred ceeCcchhheeccCCcHHHHH
Confidence 999999999999999999864
No 2
>PF14597 Lactamase_B_5: Metallo-beta-lactamase superfamily; PDB: 2P97_B.
Probab=98.79 E-value=1.7e-07 Score=86.53 Aligned_cols=140 Identities=14% Similarity=0.149 Sum_probs=88.9
Q ss_pred EEcCcEEEEeeecccccceeeccceEEEEEEcCCcEEEEcCCCCCHHHHHHHHHhcCCeeEEEeCCCccccccChHHHHH
Q 018387 98 VVKGRIWLFEQEQALGFSSVSTNIRMTVIKLKSGGLWVHAPIAPTKECIQLVKELAAPVEYIILPTFAYEHKIFVGPFSR 177 (357)
Q Consensus 98 ~v~~~IWt~eq~~~i~~~~v~vg~RMTVVRL~dG~L~V~SPValT~E~~~~L~~LGg~VkyIVaPn~s~EH~lfl~~w~~ 177 (357)
....+||.-+. |. . --++.-..-..+-.+|. +++.|++++.|..+.|+++| .|+|||+.|. .|--.+..+++
T Consensus 4 lhrpdl~~Ws~-fn-~--~~n~dfng~~~~~p~Gn-ilIDP~~ls~~~~~~l~a~g-gv~~IvLTn~--dHvR~A~~ya~ 75 (199)
T PF14597_consen 4 LHRPDLFSWSW-FN-E--ARNLDFNGHAWRRPEGN-ILIDPPPLSAHDWKHLDALG-GVAWIVLTNR--DHVRAAEDYAE 75 (199)
T ss_dssp -SSTTEEEEEE-EE-T--TTTEEEEEEEE--TT---EEES-----HHHHHHHHHTT---SEEE-SSG--GG-TTHHHHHH
T ss_pred ccCCccchhhh-cC-h--hhccCceeEEEEcCCCC-EEecCccccHHHHHHHHhcC-CceEEEEeCC--hhHhHHHHHHH
Confidence 34455766553 21 0 23445556667775555 48899999999999999999 7999999997 99999999999
Q ss_pred hCCCCeEEeCCCCcC-CCCCCCcceeccccccccCCCCCCCcccCCeeEEEccCCCCCCCCceEEEEEEcCCceEEEecc
Q 018387 178 KFPRAQIWVAPRQWS-WPLNLPLAFFGIFRAKTLIDEDLSTPWADEIEQKVLSSPEVGIGPYVEVAFYHKPSRTLLVTDA 256 (357)
Q Consensus 178 ~FP~Akv~~~pg~~s-~p~~lpl~~~gi~~~~~L~~~~~~~pw~~efd~~~l~~~~~g~~~~~EvvffHKpSkTLIvtDl 256 (357)
.| .|+||++++-.+ +|.. .++.+. +.+...+.|....+. |++.--|+++|-.. +|||+.|+
T Consensus 76 ~~-~a~i~~p~~d~~~~p~~---------~D~~l~---dge~i~~g~~vi~l~----G~ktpGE~ALlled-~vLi~GDl 137 (199)
T PF14597_consen 76 QT-GAKIYGPAADAAQFPLA---------CDRWLA---DGEEIVPGLWVIHLP----GSKTPGELALLLED-RVLITGDL 137 (199)
T ss_dssp HS---EEEEEGGGCCC-SS-----------SEEE----TT-BSSTTEEEEEE-----SSSSTTEEEEEETT-TEEEESSS
T ss_pred Hh-CCeeeccHHHHhhCCCC---------Cccccc---cCCCccCceEEEEcC----CCCCCceeEEEecc-ceEEecce
Confidence 99 999999997542 2211 122232 223566778888886 87888899987766 59999999
Q ss_pred cccCCCC
Q 018387 257 VIFVPRK 263 (357)
Q Consensus 257 l~Nlp~~ 263 (357)
+..-++.
T Consensus 138 ~~~~~~g 144 (199)
T PF14597_consen 138 LRSHPAG 144 (199)
T ss_dssp EEBSSTT
T ss_pred eeecCCC
Confidence 9998876
No 3
>TIGR03413 GSH_gloB hydroxyacylglutathione hydrolase. Members of this protein family are hydroxyacylglutathione hydrolase, a detoxification enzyme known as glyoxalase II. It follows lactoylglutathione lyase, or glyoxalase I, and acts to remove the toxic metabolite methylglyoxal and related compounds. This protein belongs to the broader metallo-beta-lactamase family (pfam00753).
Probab=96.54 E-value=0.044 Score=51.92 Aligned_cols=120 Identities=17% Similarity=0.197 Sum_probs=78.9
Q ss_pred EEEEEcCCcEEEEcCCCCCHHHHHHHHHhcCCeeEEEeCCCccccccChHHHHHhCCCCeEEeCCCCcCCCCCCCcceec
Q 018387 124 TVIKLKSGGLWVHAPIAPTKECIQLVKELAAPVEYIILPTFAYEHKIFVGPFSRKFPRAQIWVAPRQWSWPLNLPLAFFG 203 (357)
Q Consensus 124 TVVRL~dG~L~V~SPValT~E~~~~L~~LGg~VkyIVaPn~s~EH~lfl~~w~~~FP~Akv~~~pg~~s~p~~lpl~~~g 203 (357)
-+|+-.+|..+++.|-. .+++.+.|+++|-++++|++-+.-.-|--.+..++++|| ++||++++.. .+. .
T Consensus 13 yli~~~~~~~ilID~g~-~~~i~~~l~~~g~~l~~Il~TH~H~DHigG~~~l~~~~~-~~V~~~~~~~-~~~---~---- 82 (248)
T TIGR03413 13 WLLHDPDGQAAVVDPGE-AEPVLDALEARGLTLTAILLTHHHHDHVGGVAELLEAFP-APVYGPAEER-IPG---I---- 82 (248)
T ss_pred EEEEcCCCCEEEEcCCC-hHHHHHHHHHcCCeeeEEEeCCCCccccCCHHHHHHHCC-CeEEeccccc-CCC---C----
Confidence 34444345677888753 567888999998789999998853456667788999997 9999987641 100 0
Q ss_pred cccccccCCCCCCCcccCCeeEEEccCCCCCCCCceEEEEEEcCCceEEEecccccCC
Q 018387 204 IFRAKTLIDEDLSTPWADEIEQKVLSSPEVGIGPYVEVAFYHKPSRTLLVTDAVIFVP 261 (357)
Q Consensus 204 i~~~~~L~~~~~~~pw~~efd~~~l~~~~~g~~~~~EvvffHKpSkTLIvtDll~Nlp 261 (357)
+..+.+ ...-.+ +++++.++.. ..|...-++++....+.|+.+|+++.-.
T Consensus 83 ---~~~v~~-g~~~~~-g~~~i~v~~t---pGHT~g~i~~~~~~~~~lftGDtl~~~g 132 (248)
T TIGR03413 83 ---THPVKD-GDTVTL-GGLEFEVLAV---PGHTLGHIAYYLPDSPALFCGDTLFSAG 132 (248)
T ss_pred ---cEEeCC-CCEEEE-CCEEEEEEEC---CCCCcccEEEEECCCCEEEEcCccccCC
Confidence 111111 111123 2455555531 4466677888888889999999998754
No 4
>PLN02469 hydroxyacylglutathione hydrolase
Probab=95.96 E-value=0.13 Score=49.40 Aligned_cols=116 Identities=9% Similarity=0.126 Sum_probs=74.6
Q ss_pred CcEEEEcCCCCCHHHHHHHHHhcCCeeEEEeCCCccccccChHHHHHhCCCCeEEeCCCCcCCCCCCCcceecccccccc
Q 018387 131 GGLWVHAPIAPTKECIQLVKELAAPVEYIILPTFAYEHKIFVGPFSRKFPRAQIWVAPRQWSWPLNLPLAFFGIFRAKTL 210 (357)
Q Consensus 131 G~L~V~SPValT~E~~~~L~~LGg~VkyIVaPn~s~EH~lfl~~w~~~FP~Akv~~~pg~~s~p~~lpl~~~gi~~~~~L 210 (357)
+..+|+.|.. .+.+.+.+++.|.+|+||+.-+.-.-|---+..++++||+|+||+....... .. +..+
T Consensus 23 ~~~vlIDp~~-~~~il~~l~~~g~~l~~Il~TH~H~DH~gG~~~l~~~~~~~~V~~~~~~~~~----~~-------~~~v 90 (258)
T PLN02469 23 KDAAVVDPVD-PEKVLQAAHEHGAKIKLVLTTHHHWDHAGGNEKIKKLVPGIKVYGGSLDNVK----GC-------THPV 90 (258)
T ss_pred CeEEEECCCC-hHHHHHHHHHcCCcccEEEecCCCCccccCHHHHHHHCCCCEEEEechhcCC----CC-------CeEe
Confidence 4678888874 4778888999888899999988534555677888999999999987642111 00 0112
Q ss_pred CCCCCCCcccCCeeEEEccCCCCCCCCceEEEEEEcC----CceEEEecccccCCC
Q 018387 211 IDEDLSTPWADEIEQKVLSSPEVGIGPYVEVAFYHKP----SRTLLVTDAVIFVPR 262 (357)
Q Consensus 211 ~~~~~~~pw~~efd~~~l~~~~~g~~~~~EvvffHKp----SkTLIvtDll~Nlp~ 262 (357)
.+ ...-.+++++.+.++. ...|...-++||... .+.|+.+|++|.-.+
T Consensus 91 ~~-gd~i~lg~~~~~~vi~---tPGHT~ghi~~~~~~~~~~~~~lFtGDtLf~~g~ 142 (258)
T PLN02469 91 EN-GDKLSLGKDVNILALH---TPCHTKGHISYYVTGKEGEDPAVFTGDTLFIAGC 142 (258)
T ss_pred CC-CCEEEECCceEEEEEE---CCCCCCCCEEEEeccCCCCCCEEEecCcccCCCc
Confidence 11 1111233334444443 245666677777653 358999999986543
No 5
>PLN02398 hydroxyacylglutathione hydrolase
Probab=95.02 E-value=0.28 Score=49.14 Aligned_cols=115 Identities=18% Similarity=0.250 Sum_probs=76.4
Q ss_pred CcEEEEcCCCCCHHHHHHHHHhcCCeeEEEeCCCccccccChHHHHHhCCCCeEEeCCCCcCCCCCCCcceecccccccc
Q 018387 131 GGLWVHAPIAPTKECIQLVKELAAPVEYIILPTFAYEHKIFVGPFSRKFPRAQIWVAPRQWSWPLNLPLAFFGIFRAKTL 210 (357)
Q Consensus 131 G~L~V~SPValT~E~~~~L~~LGg~VkyIVaPn~s~EH~lfl~~w~~~FP~Akv~~~pg~~s~p~~lpl~~~gi~~~~~L 210 (357)
|..+|..|-. .+.+++.|++.|.+++||+.-+.-.-|.--+..++++| +|+||+++..... .+ ++ +..+
T Consensus 98 ~~~~vVDP~~-a~~vl~~l~~~g~~L~~ILlTH~H~DH~GG~~~L~~~~-ga~V~g~~~~~~~---i~----~~--d~~v 166 (329)
T PLN02398 98 GTVGVVDPSE-AVPVIDALSRKNRNLTYILNTHHHYDHTGGNLELKARY-GAKVIGSAVDKDR---IP----GI--DIVL 166 (329)
T ss_pred CEEEEEcCCC-HHHHHHHHHhcCCCceEEEECCCCchhhCCHHHHHHhc-CCEEEEehHHhhh---cc----CC--cEEe
Confidence 4566777754 57788889998888999999885456777788899998 6999998753211 00 00 1112
Q ss_pred CCCCCCCccc-CCeeEEEccCCCCCCCCceEEEEEEcCCceEEEecccccCCC
Q 018387 211 IDEDLSTPWA-DEIEQKVLSSPEVGIGPYVEVAFYHKPSRTLLVTDAVIFVPR 262 (357)
Q Consensus 211 ~~~~~~~pw~-~efd~~~l~~~~~g~~~~~EvvffHKpSkTLIvtDll~Nlp~ 262 (357)
.+ ...|. ++.++.++. ...|-..-+++|....+.|+.+|++|+-..
T Consensus 167 ~d---Gd~i~lgg~~l~vi~---tPGHT~GhI~~~~~~~~vLFtGDtLf~~g~ 213 (329)
T PLN02398 167 KD---GDKWMFAGHEVLVME---TPGHTRGHISFYFPGSGAIFTGDTLFSLSC 213 (329)
T ss_pred CC---CCEEEECCeEEEEEe---CCCcCCCCEEEEECCCCEEEECCCcCCCCc
Confidence 11 11221 234444443 245777788888888899999999998653
No 6
>COG0491 GloB Zn-dependent hydrolases, including glyoxylases [General function prediction only]
Probab=95.00 E-value=0.48 Score=42.17 Aligned_cols=137 Identities=11% Similarity=-0.007 Sum_probs=78.2
Q ss_pred cceEEEEEEcCC-cEEEEcCCCCC---HHHHHHHHHhcCCeeEEEeCCCccccccChHHHHHhCCCCeEEeCCCCcCCCC
Q 018387 120 NIRMTVIKLKSG-GLWVHAPIAPT---KECIQLVKELAAPVEYIILPTFAYEHKIFVGPFSRKFPRAQIWVAPRQWSWPL 195 (357)
Q Consensus 120 g~RMTVVRL~dG-~L~V~SPValT---~E~~~~L~~LGg~VkyIVaPn~s~EH~lfl~~w~~~FP~Akv~~~pg~~s~p~ 195 (357)
+.....+...++ +.+++++-..+ +.+.+.+.++|.+|++||+.+.-.-|---+..+++.++.|+++..+.......
T Consensus 23 ~~~~~~~~~~~~~~~~liD~G~~~~~~~~~~~~l~~~~~~i~~vilTH~H~DH~gg~~~~~~~~~~~~~~~~~~~~~~~~ 102 (252)
T COG0491 23 SGNSVYLLVDGEGGAVLIDTGLGDADAEALLEALAALGLDVDAILLTHGHFDHIGGAAVLKEAFGAAPVIAPAEVPLLLR 102 (252)
T ss_pred ccccEEEEEcCCCceEEEeCCCCchHHHHHHHHHHHcCCChheeeecCCchhhhccHHHHHhhcCCceEEccchhhhhhh
Confidence 333344444333 67777776665 56777888888779999999964556666668888887789844443211000
Q ss_pred CCCcceec-----cccccccCC----CCCCCcccC-CeeEEEccCCCCCCCCceEEEEEEcCCceEEEecccccCC
Q 018387 196 NLPLAFFG-----IFRAKTLID----EDLSTPWAD-EIEQKVLSSPEVGIGPYVEVAFYHKPSRTLLVTDAVIFVP 261 (357)
Q Consensus 196 ~lpl~~~g-----i~~~~~L~~----~~~~~pw~~-efd~~~l~~~~~g~~~~~EvvffHKpSkTLIvtDll~Nlp 261 (357)
.....+.+ ......... +.....+.+ .++... .+.|...-++++.+..+.|+++|+++.-.
T Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~-----tpGHT~g~~~~~~~~~~~l~~gD~~~~~~ 173 (252)
T COG0491 103 EEILRKAGVTAEAYAAPGASPLRALEDGDELDLGGLELEVLH-----TPGHTPGHIVFLLEDGGVLFTGDTLFAGD 173 (252)
T ss_pred cccccccccccccCCCCccccceecCCCCEEEecCeEEEEEE-----CCCCCCCeEEEEECCccEEEecceeccCC
Confidence 00000100 000000000 000111211 133333 36788889999999999999999998874
No 7
>PRK10241 hydroxyacylglutathione hydrolase; Provisional
Probab=94.75 E-value=0.43 Score=45.38 Aligned_cols=113 Identities=14% Similarity=0.112 Sum_probs=70.4
Q ss_pred CCcEEEEcCCCCCHHHHHHHHHhcCCeeEEEeCCCccccccChHHHHHhCCCCeEEeCCCCcCCCCCCCcceeccccccc
Q 018387 130 SGGLWVHAPIAPTKECIQLVKELAAPVEYIILPTFAYEHKIFVGPFSRKFPRAQIWVAPRQWSWPLNLPLAFFGIFRAKT 209 (357)
Q Consensus 130 dG~L~V~SPValT~E~~~~L~~LGg~VkyIVaPn~s~EH~lfl~~w~~~FP~Akv~~~pg~~s~p~~lpl~~~gi~~~~~ 209 (357)
+|..+++.|-. .+.+++.|++.|..+++|+.-+.=.-|--.+..++++||+++||++....... . +..
T Consensus 21 ~~~~ilIDpg~-~~~vl~~l~~~g~~l~~IllTH~H~DHigG~~~l~~~~~~~~V~~~~~~~~~~----~-------~~~ 88 (251)
T PRK10241 21 AGRCLIVDPGE-AEPVLNAIAENNWQPEAIFLTHHHHDHVGGVKELVEKFPQIVVYGPQETQDKG----T-------TQV 88 (251)
T ss_pred CCcEEEECCCC-hHHHHHHHHHcCCccCEEEeCCCCchhhccHHHHHHHCCCCEEEecccccccC----C-------ceE
Confidence 45566777753 57889999999877899988874233445567899999999999976532110 0 011
Q ss_pred cCCCCCCCcccCCeeEEEccCCCCCCCCceEEEEEEcCCceEEEecccccCC
Q 018387 210 LIDEDLSTPWADEIEQKVLSSPEVGIGPYVEVAFYHKPSRTLLVTDAVIFVP 261 (357)
Q Consensus 210 L~~~~~~~pw~~efd~~~l~~~~~g~~~~~EvvffHKpSkTLIvtDll~Nlp 261 (357)
+.+ ...-.+ ++.++.++.. ..|...-++++. .+.|+.+|++|.-.
T Consensus 89 v~~-g~~i~i-g~~~~~vi~t---PGHT~ghi~~~~--~~~lFtGDtlf~~g 133 (251)
T PRK10241 89 VKD-GETAFV-LGHEFSVFAT---PGHTLGHICYFS--KPYLFCGDTLFSGG 133 (251)
T ss_pred eCC-CCEEEe-CCcEEEEEEc---CCCCccceeeec--CCcEEEcCeeccCC
Confidence 111 111122 2344555531 346566677765 36899999998754
No 8
>PLN02962 hydroxyacylglutathione hydrolase
Probab=94.50 E-value=0.31 Score=46.85 Aligned_cols=114 Identities=15% Similarity=0.115 Sum_probs=74.5
Q ss_pred CCcEEEEcCCC-CCHHHHHHHHHhcCCeeEEEeCCCccccccChHHHHHhCCCCeEEeCCCCcCCCCCCCcceecccccc
Q 018387 130 SGGLWVHAPIA-PTKECIQLVKELAAPVEYIILPTFAYEHKIFVGPFSRKFPRAQIWVAPRQWSWPLNLPLAFFGIFRAK 208 (357)
Q Consensus 130 dG~L~V~SPVa-lT~E~~~~L~~LGg~VkyIVaPn~s~EH~lfl~~w~~~FP~Akv~~~pg~~s~p~~lpl~~~gi~~~~ 208 (357)
+|.-+|+.|.. -.+.+++.|++.|-+|++|+.-+.=.-|--.+..++++||+|++++.+..... . +.
T Consensus 35 ~~~avlIDP~~~~~~~~l~~l~~~g~~i~~Il~TH~H~DHigg~~~l~~~~~~a~v~~~~~~~~~-------~-----d~ 102 (251)
T PLN02962 35 DKPALLIDPVDKTVDRDLSLVKELGLKLIYAMNTHVHADHVTGTGLLKTKLPGVKSIISKASGSK-------A-----DL 102 (251)
T ss_pred CCEEEEECCCCCcHHHHHHHHHHCCCeeEEEEcCCCCchhHHHHHHHHHHCCCCeEEeccccCCC-------C-----CE
Confidence 46678889864 34777888999988899999998534555666778889999999986532110 0 01
Q ss_pred ccCCCCCCCcccCCeeEEEccCCCCCCCCceEEEEEEc------CCceEEEecccccC
Q 018387 209 TLIDEDLSTPWADEIEQKVLSSPEVGIGPYVEVAFYHK------PSRTLLVTDAVIFV 260 (357)
Q Consensus 209 ~L~~~~~~~pw~~efd~~~l~~~~~g~~~~~EvvffHK------pSkTLIvtDll~Nl 260 (357)
.+.+ ...-.+ +++++..+. ...|-..-++|+.. ..+.|+..|++|.-
T Consensus 103 ~l~~-g~~i~~-g~~~l~vi~---tPGHT~g~v~~~~~d~~~~~~~~~lftGD~Lf~~ 155 (251)
T PLN02962 103 FVEP-GDKIYF-GDLYLEVRA---TPGHTAGCVTYVTGEGPDQPQPRMAFTGDALLIR 155 (251)
T ss_pred EeCC-CCEEEE-CCEEEEEEE---CCCCCcCcEEEEeccCCCCCccceEEECCeeccC
Confidence 1111 111122 345555553 24577777888764 35799999999863
No 9
>smart00849 Lactamase_B Metallo-beta-lactamase superfamily. Apart from the beta-lactamases a number of other proteins contain this domain PUBMED:7588620. These proteins include thiolesterases, members of the glyoxalase II family, that catalyse the hydrolysis of S-D-lactoyl-glutathione to form glutathione and D-lactic acid and a competence protein that is essential for natural transformation in Neisseria gonorrhoeae and could be a transporter involved in DNA uptake. Except for the competence protein these proteins bind two zinc ions per molecule as cofactor.
Probab=93.99 E-value=0.89 Score=38.68 Aligned_cols=135 Identities=14% Similarity=0.097 Sum_probs=76.7
Q ss_pred ccceEEEEEEcCCcEEEEcCC-CCCHHHHHHHHHhcC-CeeEEEeCCCccccccChHHHHHhCCCCeEEeCCCCcCCCCC
Q 018387 119 TNIRMTVIKLKSGGLWVHAPI-APTKECIQLVKELAA-PVEYIILPTFAYEHKIFVGPFSRKFPRAQIWVAPRQWSWPLN 196 (357)
Q Consensus 119 vg~RMTVVRL~dG~L~V~SPV-alT~E~~~~L~~LGg-~VkyIVaPn~s~EH~lfl~~w~~~FP~Akv~~~pg~~s~p~~ 196 (357)
.+..+.+|+-. |+.+++.|- .....+.+.|+++|. +|++|+.-+.-.-|--.+..+.++ +++++|+++..+..-..
T Consensus 4 ~~~~~~li~~~-~~~iliD~g~~~~~~~~~~l~~~~~~~i~~i~iTH~H~DH~~g~~~~~~~-~~~~i~~~~~~~~~~~~ 81 (183)
T smart00849 4 VGVNSYLVEGD-GGAILIDTGPGEAEDLLAELKKLGPKDIDAIILTHGHPDHIGGLPELLEA-PGAPVYAPEGTAELLKD 81 (183)
T ss_pred cceeEEEEEeC-CceEEEeCCCChhHHHHHHHHHcCchhhcEEEecccCcchhccHHHHHhC-CCCcEEEchhhhHHHhc
Confidence 45678899885 666677766 444466666888864 899999998645566666677776 89999988764421000
Q ss_pred C------Ccceecccc-ccccCCCCCCCcccCCeeEEEccCCCCCCCCceEEEEEEcCCceEEEecccccC
Q 018387 197 L------PLAFFGIFR-AKTLIDEDLSTPWADEIEQKVLSSPEVGIGPYVEVAFYHKPSRTLLVTDAVIFV 260 (357)
Q Consensus 197 l------pl~~~gi~~-~~~L~~~~~~~pw~~efd~~~l~~~~~g~~~~~EvvffHKpSkTLIvtDll~Nl 260 (357)
. +..+..... ...+. ....-.+. +.++.++.. ..|....++++-+..+.|+.+|+...-
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~-~~~~~~~~~---~~h~~~~~~~~~~~~~vl~~gD~~~~~ 147 (183)
T smart00849 82 LLKLGGALGAEAPPPPPDRTLK-DGEELDLG-GLELEVIHT---PGHTPGSIVLYLPEGKILFTGDLLFSG 147 (183)
T ss_pred cchhccccCcCCCCCccceecC-CCCEEEeC-CceEEEEEC---CCCCCCcEEEEECCCCEEEECCeeecc
Confidence 0 000000000 00111 11111232 345555531 234444566666668899999998543
No 10
>COG0426 FpaA Uncharacterized flavoproteins [Energy production and conversion]
Probab=92.60 E-value=1 Score=46.35 Aligned_cols=136 Identities=12% Similarity=0.068 Sum_probs=90.8
Q ss_pred eEEEEEEcCCcEEEEcCCC--CCHHHHHHHHHhcC--CeeEEEeCCCccccccChHHHHHhCCCCeEEeCCCCcCC-C--
Q 018387 122 RMTVIKLKSGGLWVHAPIA--PTKECIQLVKELAA--PVEYIILPTFAYEHKIFVGPFSRKFPRAQIWVAPRQWSW-P-- 194 (357)
Q Consensus 122 RMTVVRL~dG~L~V~SPVa--lT~E~~~~L~~LGg--~VkyIVaPn~s~EH~lfl~~w~~~FP~Akv~~~pg~~s~-p-- 194 (357)
+.=+|+ ++...++.|+- .+++.++.|+.+-. ++.|||+-+..+-|---++.|.+.+|+|+++++.-...+ +
T Consensus 37 NSYLI~--~~k~aLID~~~~~~~~~~l~~l~~~id~k~iDYIi~~H~ePDhsg~l~~ll~~~p~a~ii~s~~~~~~L~~~ 114 (388)
T COG0426 37 NSYLIV--GDKTALIDTVGEKFFDEYLENLSKYIDPKEIDYIIVNHTEPDHSGSLPELLELAPNAKIICSKLAARFLKGF 114 (388)
T ss_pred eeEEEe--CCcEEEECCCCcchHHHHHHHHHhhcChhcCeEEEECCCCcchhhhHHHHHHhCCCCEEEeeHHHHHHHHHh
Confidence 445677 68888999984 56788888888763 599999999888999999999999999999987731111 0
Q ss_pred CCCCcceeccccccccCCCCCCCccc-CCeeEEEccCCCCCCCCceEEEEEEcCCceEEEecccccCCCCCCcccccc
Q 018387 195 LNLPLAFFGIFRAKTLIDEDLSTPWA-DEIEQKVLSSPEVGIGPYVEVAFYHKPSRTLLVTDAVIFVPRKPPECISKE 271 (357)
Q Consensus 195 ~~lpl~~~gi~~~~~L~~~~~~~pw~-~efd~~~l~~~~~g~~~~~EvvffHKpSkTLIvtDll~Nlp~~ppEq~s~~ 271 (357)
...+. +.-+.++ ...-.++ .++.+..-. -.|.......|.+.+|.|+.+|+.-...+. ...|+.+
T Consensus 115 ~~~~~-~~~ivk~------Gd~ldlGg~tL~Fi~ap----~LHWPd~m~TYd~~~kILFS~D~fG~h~~~-~~~fded 180 (388)
T COG0426 115 YHDPE-WFKIVKT------GDTLDLGGHTLKFIPAP----FLHWPDTMFTYDPEDKILFSCDAFGAHVCD-DYRFDED 180 (388)
T ss_pred cCCcc-ceeecCC------CCEeccCCcEEEEEeCC----CCCCCCceeEeecCCcEEEccccccccccc-hhccccC
Confidence 00000 0001111 1112333 344444432 566777888999999999999998776664 2445544
No 11
>PRK11921 metallo-beta-lactamase/flavodoxin domain-containing protein; Provisional
Probab=92.36 E-value=1.7 Score=43.92 Aligned_cols=126 Identities=13% Similarity=0.073 Sum_probs=74.9
Q ss_pred eEEEEEEcCCcEEEEcCCC--CCHHHHHHHHHh-c-CCeeEEEeCCCccccccChHHHHHhCCCCeEEeCCCCcCC-CCC
Q 018387 122 RMTVIKLKSGGLWVHAPIA--PTKECIQLVKEL-A-APVEYIILPTFAYEHKIFVGPFSRKFPRAQIWVAPRQWSW-PLN 196 (357)
Q Consensus 122 RMTVVRL~dG~L~V~SPVa--lT~E~~~~L~~L-G-g~VkyIVaPn~s~EH~lfl~~w~~~FP~Akv~~~pg~~s~-p~~ 196 (357)
++-+|+ +++.+|+.+.. .++++++.|++. + .+++|||+-+.-.-|---+..+.++||+|++|+++..... ...
T Consensus 34 NsyLI~--~~~~vLIDtg~~~~~~~~~~~l~~~~~~~~Id~IilTH~H~DHiggl~~l~~~~p~a~V~~~~~~~~~l~~~ 111 (394)
T PRK11921 34 NSYLIK--DEKTVLIDTVWQPFAKEFVENLKKEIDLDKIDYIVANHGEIDHSGALPELMKEIPDTPIYCTKNGAKSLKGH 111 (394)
T ss_pred EEEEEe--CCCEEEEeCCCCCcHHHHHHHHHhhcCcccCCEEEeCCCCCchhhHHHHHHHHCCCCEEEECHHHHHHHHHH
Confidence 455664 45677788763 457788877764 2 2699999987534455556778889999999998853210 000
Q ss_pred CCcceeccccccccCCCCCCCcccCCeeEEEccCCCCCCCCceEEEEEEcCCceEEEeccc
Q 018387 197 LPLAFFGIFRAKTLIDEDLSTPWADEIEQKVLSSPEVGIGPYVEVAFYHKPSRTLLVTDAV 257 (357)
Q Consensus 197 lpl~~~gi~~~~~L~~~~~~~pw~~efd~~~l~~~~~g~~~~~EvvffHKpSkTLIvtDll 257 (357)
....|. ...+.+ ...-.+ ++..+..+..+ |.|...-+++|-+..++|+.+|++
T Consensus 112 ~~~~~~----~~~v~~-g~~l~l-G~~~l~~i~tP--~~H~p~~~~~y~~~~~vLFsgD~f 164 (394)
T PRK11921 112 YHQDWN----FVVVKT-GDRLEI-GSNELIFIEAP--MLHWPDSMFTYLTGDNILFSNDAF 164 (394)
T ss_pred hCCCCc----eEEeCC-CCEEee-CCeEEEEEeCC--CCCCCCceEEEEcCCCEEEecCcc
Confidence 000010 011111 111122 33455555322 557677788888899999999985
No 12
>PRK05452 anaerobic nitric oxide reductase flavorubredoxin; Provisional
Probab=91.33 E-value=2.1 Score=44.82 Aligned_cols=130 Identities=12% Similarity=0.112 Sum_probs=78.5
Q ss_pred cceEEEEEEcCCcEEEEcCCC--CCHHHHHHHHHh-c-CCeeEEEeCCCccccccChHHHHHhCCCCeEEeCCCCcCC--
Q 018387 120 NIRMTVIKLKSGGLWVHAPIA--PTKECIQLVKEL-A-APVEYIILPTFAYEHKIFVGPFSRKFPRAQIWVAPRQWSW-- 193 (357)
Q Consensus 120 g~RMTVVRL~dG~L~V~SPVa--lT~E~~~~L~~L-G-g~VkyIVaPn~s~EH~lfl~~w~~~FP~Akv~~~pg~~s~-- 193 (357)
..+.-+|+ ++.-+|+.|.. ..++.++.|.+. + .+++|||+-+.-.-|---++.+.++||+|+|++++.....
T Consensus 34 t~NsYLI~--~~~~vLIDtg~~~~~~~~l~~l~~~~~~~~Id~IilTH~H~DH~Ggl~~Ll~~~p~a~V~~s~~~~~~l~ 111 (479)
T PRK05452 34 SYNSYLIR--EEKNVLIDTVDHKFSREFVQNLRNEIDLADIDYIVINHAEEDHAGALTELMAQIPDTPIYCTANAIDSIN 111 (479)
T ss_pred EEEEEEEE--CCCEEEEeCCCcccHHHHHHHHHhcCCHhhCCEEEeCCCCcchhchHHHHHHHCCCCEEEECHHHHHHHH
Confidence 34677787 35667778764 457788887753 2 2799999987534455556678889999999998753211
Q ss_pred -CCC-CCcceeccccccccCCCCCCCcccCCeeEEEccCCCCCCCCceEEEEEEcCCceEEEecccccC
Q 018387 194 -PLN-LPLAFFGIFRAKTLIDEDLSTPWADEIEQKVLSSPEVGIGPYVEVAFYHKPSRTLLVTDAVIFV 260 (357)
Q Consensus 194 -p~~-lpl~~~gi~~~~~L~~~~~~~pw~~efd~~~l~~~~~g~~~~~EvvffHKpSkTLIvtDll~Nl 260 (357)
... .+..+ ..+.+ ...-.+++.....++..+ +.|...-+++|...+++|+.+|++=..
T Consensus 112 ~~~~~~~~~~------~~v~~-G~~l~lG~~~~l~~i~tP--~~H~pgs~~~y~~~~~vLFsgD~fG~~ 171 (479)
T PRK05452 112 GHHHHPEWNF------NVVKT-GDTLDIGNGKQLIFVETP--MLHWPDSMMTYLTGDAVLFSNDAFGQH 171 (479)
T ss_pred HhhcCCcCeE------EEeCC-CCEEecCCCcEEEEEECC--CCCCCCceEEEEcCCCEEEecccccCC
Confidence 000 01111 11111 111234433334444322 457777888888999999999986443
No 13
>PRK11539 ComEC family competence protein; Provisional
Probab=53.46 E-value=2.1e+02 Score=31.91 Aligned_cols=117 Identities=18% Similarity=0.111 Sum_probs=71.3
Q ss_pred EEEEEEcCCcEEEEcCCCC-------CHHHHHHHHHhcCCeeEEEeCCCccccccChHHHHHhCCCCeEEeCCCCcCCCC
Q 018387 123 MTVIKLKSGGLWVHAPIAP-------TKECIQLVKELAAPVEYIILPTFAYEHKIFVGPFSRKFPRAQIWVAPRQWSWPL 195 (357)
Q Consensus 123 MTVVRL~dG~L~V~SPVal-------T~E~~~~L~~LGg~VkyIVaPn~s~EH~lfl~~w~~~FP~Akv~~~pg~~s~p~ 195 (357)
.++|+- +|.-+++++=.- ...+...|++.|-++.+||+.+.-.-|---+....++||.++++.+.+...
T Consensus 513 a~li~~-~~~~lLiDtG~~~~~~~~~~~~i~P~L~~~Gi~lD~lilSH~d~DH~GGl~~Ll~~~~~~~i~~~~~~~~--- 588 (755)
T PRK11539 513 AVVIER-NGKAILYDTGNAWPTGDSAQQVIIPWLRWHGLTPEGIILSHEHLDHRGGLASLLHAWPMAWIRSPLNWAN--- 588 (755)
T ss_pred EEEEEE-CCEEEEEeCCCCCCCCcchHHHHHHHHHHcCCCcCEEEeCCCCcccCCCHHHHHHhCCcceeeccCcccC---
Confidence 345664 566777776431 244566788888678999998865567777888899999999998653211
Q ss_pred CCCcceeccccccccCCCCCCCcccCCeeEEEccCCCCC--CCCceEEEEEE--cCCceEEEecc
Q 018387 196 NLPLAFFGIFRAKTLIDEDLSTPWADEIEQKVLSSPEVG--IGPYVEVAFYH--KPSRTLLVTDA 256 (357)
Q Consensus 196 ~lpl~~~gi~~~~~L~~~~~~~pw~~efd~~~l~~~~~g--~~~~~EvvffH--KpSkTLIvtDl 256 (357)
..+ . .....-.| ++++++++.|.... ...+..+|+.- ...+.|+.+|+
T Consensus 589 ~~~-----------~-~~g~~~~~-~~~~~~vL~P~~~~~~~~N~~S~Vl~i~~~~~~~LltGDi 640 (755)
T PRK11539 589 HLP-----------C-VRGEQWQW-QGLTFSVHWPLEQSNDAGNNDSCVIRVDDGKHSILLTGDL 640 (755)
T ss_pred ccc-----------c-cCCCeEeE-CCEEEEEEecCcccCCCCCCccEEEEEEECCEEEEEEeCC
Confidence 000 0 00111124 45788888664311 22233455543 45668999995
No 14
>PF00753 Lactamase_B: Metallo-beta-lactamase superfamily; InterPro: IPR001279 Apart from the beta-lactamases and metallo-beta-lactamases, a number of other proteins contain this domain []. These proteins include thiolesterases, members of the glyoxalase II family, that catalyse the hydrolysis of S-D-lactoyl-glutathione to form glutathione and D-lactic acid and a competence protein that is essential for natural transformation in Neisseria gonorrhoeae and could be a transporter involved in DNA uptake. Except for the competence protein these proteins bind two zinc ions per molecule as cofactor.; GO: 0016787 hydrolase activity; PDB: 3H3E_A 3Q6V_B 3SD9_B 3IOF_A 2GKL_A 1X8I_A 3FAI_A 2QDS_A 3IOG_A 3F9O_A ....
Probab=36.39 E-value=1.2e+02 Score=25.04 Aligned_cols=139 Identities=8% Similarity=-0.046 Sum_probs=78.2
Q ss_pred ccceEEEEEEcCCcEEEEcCCCCCHHHHHHH---HHh-cCCeeEEEeCCCccccccChHHHHHhCCCCeEEeCCCCcCCC
Q 018387 119 TNIRMTVIKLKSGGLWVHAPIAPTKECIQLV---KEL-AAPVEYIILPTFAYEHKIFVGPFSRKFPRAQIWVAPRQWSWP 194 (357)
Q Consensus 119 vg~RMTVVRL~dG~L~V~SPValT~E~~~~L---~~L-Gg~VkyIVaPn~s~EH~lfl~~w~~~FP~Akv~~~pg~~s~p 194 (357)
.++.+.+|+- +++.+++.+=.-........ ... +.+|++||+.+.=.-|---+..+.++++.+.+..........
T Consensus 4 ~~~n~~li~~-~~~~iliD~G~~~~~~~~~~~~~~~~~~~~i~~vi~TH~H~DH~ggl~~~~~~~~~~~~~~~~~~~~~~ 82 (194)
T PF00753_consen 4 GGSNSYLIEG-GDGAILIDTGLDPDFAKELELALLGISGEDIDAVILTHAHPDHIGGLPELLEAGPVVIIYSSADAAKAI 82 (194)
T ss_dssp EEEEEEEEEE-TTEEEEESEBSSHHHHHHHHHHHHHHTGGGEEEEEESSSSHHHHTTHHHHHHHTTEEEEEEHHHHHHHH
T ss_pred eeEEEEEEEE-CCEEEEEeCCCCchhhHHhhhhHhhccCCCeEEEEECcccccccccccccccccceeeeeccccccccc
Confidence 3678899996 67788888776666666542 222 248999999885344677788899999877766554311000
Q ss_pred CCCCccee-----ccccccccCCCCCCCcccCCeeEEEccCCCCCCCCceEEEEEEcCCceEEEecccccCC
Q 018387 195 LNLPLAFF-----GIFRAKTLIDEDLSTPWADEIEQKVLSSPEVGIGPYVEVAFYHKPSRTLLVTDAVIFVP 261 (357)
Q Consensus 195 ~~lpl~~~-----gi~~~~~L~~~~~~~pw~~efd~~~l~~~~~g~~~~~EvvffHKpSkTLIvtDll~Nlp 261 (357)
........ ...................+.......+ ..+......++-...++|+.+|++++-.
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~vlftGD~~~~~~ 151 (194)
T PF00753_consen 83 RPPDRDSASRRGPAVPPPPIIDEDEDDLEIGGDRILFIIPG---PGHGSDSLIIYLPGGKVLFTGDLLFSNE 151 (194)
T ss_dssp HHHHHHHHHHHHHHHESEEEEEETTTEEEEETTEEEEEEES---SSSSTTEEEEEETTTTEEEEETTSCTTT
T ss_pred cccccccccccccccccccceeeecccccccccccccceec---cccCCcceEEEeCCCcEEEeeeEeccCC
Confidence 00000000 0000000000011122333344443321 4455667778889999999999998654
No 15
>COG0289 DapB Dihydrodipicolinate reductase [Amino acid transport and metabolism]
Probab=33.62 E-value=50 Score=32.65 Aligned_cols=59 Identities=20% Similarity=0.188 Sum_probs=48.4
Q ss_pred CCcEEEEcCCCCCHHHHHHHHHhcCCeeEEEeCCCc---cccccChHHHHHhCC--CCeEEeCC
Q 018387 130 SGGLWVHAPIAPTKECIQLVKELAAPVEYIILPTFA---YEHKIFVGPFSRKFP--RAQIWVAP 188 (357)
Q Consensus 130 dG~L~V~SPValT~E~~~~L~~LGg~VkyIVaPn~s---~EH~lfl~~w~~~FP--~Akv~~~p 188 (357)
.|--.|.-..-+|+|.++.|+++...|.-+++||.| .-...++...++.++ +++|+=..
T Consensus 92 ~~~~lVIGTTGf~~e~~~~l~~~a~~v~vv~a~NfSiGvnll~~l~~~aak~l~~~DiEIiE~H 155 (266)
T COG0289 92 HGKPLVIGTTGFTEEQLEKLREAAEKVPVVIAPNFSLGVNLLFKLAEQAAKVLDDYDIEIIEAH 155 (266)
T ss_pred cCCCeEEECCCCCHHHHHHHHHHHhhCCEEEeccchHHHHHHHHHHHHHHHhcCCCCEEehhhh
Confidence 355568888999999999999998789999999998 456677888899999 77776443
No 16
>COG2875 CobM Precorrin-4 methylase [Coenzyme metabolism]
Probab=33.14 E-value=35 Score=33.45 Aligned_cols=37 Identities=22% Similarity=0.441 Sum_probs=31.1
Q ss_pred EEEEEEcCCcEEEEcCCCCCHHHHHHHHHhcCCeeEEEeCCC
Q 018387 123 MTVIKLKSGGLWVHAPIAPTKECIQLVKELAAPVEYIILPTF 164 (357)
Q Consensus 123 MTVVRL~dG~L~V~SPValT~E~~~~L~~LGg~VkyIVaPn~ 164 (357)
-+|+||.+|+.-+|+.+ -|-+++|+++| +.|=|+|..
T Consensus 76 k~VvRLhSGDpsiYgA~---~EQm~~L~~~g--I~yevvPGV 112 (254)
T COG2875 76 KDVVRLHSGDPSIYGAL---AEQMRELEALG--IPYEVVPGV 112 (254)
T ss_pred CeEEEeecCChhHHHHH---HHHHHHHHHcC--CCeEEeCCc
Confidence 47999999999999987 46677777777 899999995
No 17
>PF05157 T2SE_Nter: Type II secretion system (T2SS), protein E, N-terminal domain; InterPro: IPR007831 This domain is found at the N terminus of members of the general secretory system II protein E. Proteins in this subfamily are typically involved in Type IV pilus biogenesis (e.g. Q9X4G8 from SWISSPROT), though some are involved in other processes; for instance aggregation in Myxococcus xanthus (e.g. Q9RF11 from SWISSPROT) [].; GO: 0005524 ATP binding, 0006810 transport; PDB: 2D27_A 2D28_C.
Probab=27.08 E-value=2e+02 Score=22.51 Aligned_cols=43 Identities=19% Similarity=0.319 Sum_probs=29.9
Q ss_pred ceEEEEEEcCCcEEEEcCCCCCHHHHHHHHHh-cC-CeeEEEeCC
Q 018387 121 IRMTVIKLKSGGLWVHAPIAPTKECIQLVKEL-AA-PVEYIILPT 163 (357)
Q Consensus 121 ~RMTVVRL~dG~L~V~SPValT~E~~~~L~~L-Gg-~VkyIVaPn 163 (357)
-|+-.++..+|.+.|..-=+.+.+.++.|+.+ |. +++.++++.
T Consensus 48 ~~~lPl~~~~~~l~va~~dP~~~~~~~~l~~~~~~~~i~~~la~~ 92 (109)
T PF05157_consen 48 NRVLPLRQDDGTLVVAVADPLDPEALDELEFLLGKYPIEFVLATR 92 (109)
T ss_dssp HTEEEEEECTTCEEEEES-TT-HHHHHHHHHHH-S--EEEEE--H
T ss_pred cCEEEEEEECCEEEEEEcCCCCHHHHHHHHHHcCCCCeEEEEeCH
Confidence 46677888888898888888899999999988 54 688666654
No 18
>COG0106 HisA Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase [Amino acid transport and metabolism]
Probab=24.02 E-value=88 Score=30.55 Aligned_cols=42 Identities=19% Similarity=0.252 Sum_probs=32.2
Q ss_pred CHHHHHHHHHhcCCeeEEEeCCCccccccChHHHHHhCCCCeEEe
Q 018387 142 TKECIQLVKELAAPVEYIILPTFAYEHKIFVGPFSRKFPRAQIWV 186 (357)
Q Consensus 142 T~E~~~~L~~LGg~VkyIVaPn~s~EH~lfl~~w~~~FP~Akv~~ 186 (357)
|.|..+.+-++| |.++|+-+.+.+..-++.+|.++|| =++.+
T Consensus 86 s~~~v~~ll~~G--~~rViiGt~av~~p~~v~~~~~~~g-~rivv 127 (241)
T COG0106 86 SLEDVEALLDAG--VARVIIGTAAVKNPDLVKELCEEYG-DRIVV 127 (241)
T ss_pred CHHHHHHHHHCC--CCEEEEecceecCHHHHHHHHHHcC-CcEEE
Confidence 344445444555 8999999998999999999999999 45544
No 19
>smart00139 MyTH4 Domain in Myosin and Kinesin Tails. Domain present twice in myosin-VIIa, and also present in 3 other myosins.
Probab=23.25 E-value=50 Score=29.20 Aligned_cols=22 Identities=27% Similarity=0.602 Sum_probs=19.7
Q ss_pred HHHhhhhhhhhhhhhhhCCCCC
Q 018387 302 MNQQKGWERMVLQILFLGPSNL 323 (357)
Q Consensus 302 ~~r~~GW~r~~lf~~~~~P~~l 323 (357)
+...+||+=|++...+|.|+..
T Consensus 80 ~s~~rgW~Ll~l~~~~FpPS~~ 101 (144)
T smart00139 80 QSEERGWELLYLCTSLFPPSER 101 (144)
T ss_pred hHHHHHHHHHHHHHhHcCChHH
Confidence 5688999999999999999963
No 20
>TIGR00649 MG423 conserved hypothetical protein. Contains an ATP-binding domain at the N-terminal end of the protein. Possibly part of a superfamily of beta-lactmases
Probab=21.60 E-value=2.6e+02 Score=28.44 Aligned_cols=71 Identities=14% Similarity=0.145 Sum_probs=45.9
Q ss_pred eccceEEEEEEcCCcEEEEcC-CCCCHH-H---------HHHHHHhcCCeeEEEeCCCccccccChHHHHHhCCCCeEEe
Q 018387 118 STNIRMTVIKLKSGGLWVHAP-IAPTKE-C---------IQLVKELAAPVEYIILPTFAYEHKIFVGPFSRKFPRAQIWV 186 (357)
Q Consensus 118 ~vg~RMTVVRL~dG~L~V~SP-ValT~E-~---------~~~L~~LGg~VkyIVaPn~s~EH~lfl~~w~~~FP~Akv~~ 186 (357)
.+|..|++|+. +|..+|..+ ....++ . .+.|.+-...|++|++-+.-.-|-..++.+.+.++.+.||+
T Consensus 11 eiG~n~~ll~~-~~~~iliD~G~~~~~~~~~g~~~~iPd~~~l~~~~~~i~~I~iTH~H~DHiggl~~l~~~~~~~~Vy~ 89 (422)
T TIGR00649 11 EIGKNMYVVEI-DDDVFIFDAGILFPEDAMLGVDGVIPDFSYLQENQDKVKGIFITHGHEDHIGAVPYLFHTVGFPPIYG 89 (422)
T ss_pred ccCCeEEEEEE-CCeEEEEeCCCCCCcccccCCccccCCHHHHHhccccCCEEEECCCChHHhCcHHHHHHhCCCCeEEe
Confidence 46788888887 454445543 332221 1 23344433479999998864556667777788887789999
Q ss_pred CCC
Q 018387 187 APR 189 (357)
Q Consensus 187 ~pg 189 (357)
++.
T Consensus 90 ~~~ 92 (422)
T TIGR00649 90 TPL 92 (422)
T ss_pred CHH
Confidence 886
No 21
>PRK09375 quinolinate synthetase; Provisional
Probab=20.51 E-value=1.6e+02 Score=29.85 Aligned_cols=59 Identities=20% Similarity=0.240 Sum_probs=43.6
Q ss_pred EEcCCcEEEEcCCCCCHHHHHHHHHhcCCeeEEEeCCCc-cccccC----hHHHHHhCCCCeEEeCCCC
Q 018387 127 KLKSGGLWVHAPIAPTKECIQLVKELAAPVEYIILPTFA-YEHKIF----VGPFSRKFPRAQIWVAPRQ 190 (357)
Q Consensus 127 RL~dG~L~V~SPValT~E~~~~L~~LGg~VkyIVaPn~s-~EH~lf----l~~w~~~FP~Akv~~~pg~ 190 (357)
.+.+++-+++.|+..=.+-.+. +.+ |-|++|+.. .-|..| +..|+++||+|+|++=|..
T Consensus 153 ~~~~~~~IlF~PD~~Lg~~v~~---l~~--k~vilw~G~C~vH~~~~~e~i~~~r~~~Pda~Vv~HPEc 216 (319)
T PRK09375 153 ALPQGKKILFLPDQHLGRYVAK---QTG--ADIILWPGHCIVHEEFTAEDLERLRAEYPDAKVLVHPEC 216 (319)
T ss_pred ccCCCCeEEEeCchHHHHHHHH---cCC--CEEEccCCcchhccCcCHHHHHHHHHHCcCCeEEEecCC
Confidence 3457888999998655555433 332 668999865 778877 5679999999999998864
Done!