Query 018388
Match_columns 357
No_of_seqs 444 out of 1310
Neff 11.1
Searched_HMMs 29240
Date Mon Mar 25 14:28:52 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018388.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/018388hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3o7q_A L-fucose-proton symport 100.0 2.2E-33 7.5E-38 253.4 33.1 306 8-354 26-366 (438)
2 1pw4_A Glycerol-3-phosphate tr 100.0 1.5E-32 5.1E-37 248.9 26.1 302 8-334 28-342 (451)
3 2gfp_A EMRD, multidrug resista 100.0 5.4E-31 1.9E-35 233.0 17.4 299 11-355 3-311 (375)
4 4gc0_A D-xylose-proton symport 100.0 1.2E-29 4.2E-34 232.3 22.1 311 15-332 19-361 (491)
5 4aps_A DI-OR tripeptide H+ sym 100.0 5.5E-28 1.9E-32 221.3 25.7 341 7-355 12-406 (491)
6 2cfq_A Lactose permease; trans 99.9 8.9E-26 3E-30 202.3 12.4 299 7-339 6-315 (417)
7 2xut_A Proton/peptide symporte 99.9 2.3E-23 7.8E-28 192.2 19.0 178 6-188 10-196 (524)
8 2cfq_A Lactose permease; trans 99.6 1.3E-13 4.6E-18 123.1 18.0 166 23-196 235-405 (417)
9 1pw4_A Glycerol-3-phosphate tr 99.5 1.1E-13 3.7E-18 124.8 13.8 174 8-190 252-433 (451)
10 3o7q_A L-fucose-proton symport 99.4 9.7E-12 3.3E-16 111.6 17.5 160 8-181 258-423 (438)
11 4gc0_A D-xylose-proton symport 99.4 3.7E-11 1.3E-15 109.5 18.9 143 54-198 315-470 (491)
12 4aps_A DI-OR tripeptide H+ sym 99.4 4.5E-12 1.5E-16 115.6 12.2 177 11-195 286-476 (491)
13 2gfp_A EMRD, multidrug resista 99.0 3E-10 1E-14 99.8 6.8 147 7-167 198-349 (375)
14 2xut_A Proton/peptide symporte 98.6 4.4E-07 1.5E-11 83.3 11.7 110 245-355 11-129 (524)
15 2g9p_A Antimicrobial peptide l 59.1 2.7 9.2E-05 19.1 0.4 13 71-83 3-15 (26)
16 2dw3_A Intrinsic membrane prot 33.9 86 0.003 19.5 4.6 32 169-200 32-63 (77)
17 1cmk_I CAMP-dependent protein 26.1 17 0.00057 17.3 0.2 10 75-84 9-18 (26)
18 2nrg_A Intrinsic membrane prot 24.3 1.4E+02 0.0047 18.8 4.7 33 168-200 32-64 (82)
No 1
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=100.00 E-value=2.2e-33 Score=253.42 Aligned_cols=306 Identities=14% Similarity=0.100 Sum_probs=247.5
Q ss_pred hhhhHHHHHHHHHHHHHHhhHhhHHHHHHHHhcCCCccchhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcCcchhhhHH
Q 018388 8 KTLSHLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTLP 87 (357)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~Grk~~l~~~ 87 (357)
+.+..+....++..++.....+.+|.+.++ ++.+..+.|++.+.+.++..++.+++|+++||+|||++++.+
T Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~l~~~ 97 (438)
T 3o7q_A 26 IPFALLCSLFFLWAVANNLNDILLPQFQQA--------FTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITG 97 (438)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------SCCCSHHHHHHHHHHHHHHHTTHHHHHHHHHHSCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHH--------cCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcchHHHHHH
Confidence 345566677777888888888999987664 345556789999999999999999999999999999999999
Q ss_pred HHHHHHHHHHH---HHccchhHHHHHHHHHHHhhhcccchHHHHHHHHHhhCCCccchhHHHHHHHHHHHHHHHhhHhhh
Q 018388 88 LTLSIIPLAIL---AYRRSISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASFVCGTLAA 164 (357)
Q Consensus 88 ~~~~~~~~~~~---~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~ 164 (357)
.++.+++.+++ .++++ ++.++++|+++|+ +.+...+...+++.|++|+|+|++++++.+...++|..+||.++
T Consensus 98 ~~~~~~~~~~~~~~~~~~~---~~~l~~~~~l~G~-~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~ 173 (438)
T 3o7q_A 98 LFLYALGAALFWPAAEIMN---YTLFLVGLFIIAA-GLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFG 173 (438)
T ss_dssp HHHHHHHHHHHHHHHHTTC---HHHHHHHHHHHHH-HHHHHHHHHHHHHHHSSCSTTHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhcccccc---HHHHHHHHHHHHh-hHHHhhhhHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999 88889 9999999999999 77888899999999999999999999999999999999999998
Q ss_pred HHhh------------------------------hHHHHHHHHHHHHHHHHHHHHh-ccCCCCCCCCCCCCccccccccc
Q 018388 165 RFLS------------------------------TTSAFQAATIVSMLAAAYMRVF-LKDDVPNDDDDDLTRPIITEETE 213 (357)
Q Consensus 165 ~~l~------------------------------~~~~f~~~~~~~~~~~~~~~~~-~~e~~~~~~~~~~~~~~~~~~~~ 213 (357)
+.+. ||+.|++.+.+..+..++.++. .||++++++++
T Consensus 174 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~------------ 241 (438)
T 3o7q_A 174 QSLILSNVPHQSQDVLDKMSPEQLSAYKHSLVLSVQTPYMIIVAIVLLVALLIMLTKFPALQSDNHSD------------ 241 (438)
T ss_dssp THHHHTSSCCCCHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCTTTCCCC------------
T ss_pred HHHHhcccccccccccccCCcchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHcCCccccccccc------------
Confidence 8764 9999988877755554443331 23332211110
Q ss_pred ccccCCCCCCCCccccccchhHHHHHHhhhcccchHHHHHHHHHHHHhhhhhhHHHHHh-hhhhcccCcchHHHHHHHHH
Q 018388 214 GVNQNESNSPVKIPVCKKIPSIRDLICLLRSSVTLSQAAVVAFFSGLSEGGMQASFLYF-LKAQFHFNKNQFADLMLIAG 292 (357)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~g~~~~~~~~~~~~~~ 292 (357)
+++ .+.++..+.++++|.++...+..++..........++|.| +++.+|.++.+.+...+...
T Consensus 242 ---------------~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 305 (438)
T 3o7q_A 242 ---------------AKQ-GSFSASLSRLARIRHWRWAVLAQFCYVGAQTACWSYLIRYAVEEIPGMTAGFAANYLTGTM 305 (438)
T ss_dssp ---------------SST-TSHHHHHHHHTTCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCHHHHHHHHHHHH
T ss_pred ---------------ccc-cchhhhHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCcchhHHHHHHHHHH
Confidence 000 1112223335668899998888888888888899999999 89888999999999999999
Q ss_pred HHHHHHHHHHHhhhhhccchhHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHhhhcccc
Q 018388 293 LAGTISQLLFMPLLAPILGEAKLLSLGLFAACINMFICSISWSAWVPYATTAFSVLVVFATP 354 (357)
Q Consensus 293 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~p 354 (357)
++..++. ++.+++.||+++|+.+..+..+..++.+++.+.++.+..+...+.+++.+...|
T Consensus 306 ~~~~~~~-~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 366 (438)
T 3o7q_A 306 VCFFIGR-FTGTWLISRFAPHKVLAAYALIAMALCLISAFAGGHVGLIALTLCSAFMSIQYP 366 (438)
T ss_dssp HHHHHHH-HHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHTTHHH
T ss_pred HHHHHHH-HHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHH
Confidence 9999988 889999999999999999999998888888887766555555566666665554
No 2
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=100.00 E-value=1.5e-32 Score=248.87 Aligned_cols=302 Identities=12% Similarity=0.084 Sum_probs=237.3
Q ss_pred hhhhHHHHHHHHHHHHHHhhHhhHHHHHHHHhcCCCccchhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcCcchhhhHH
Q 018388 8 KTLSHLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTLP 87 (357)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~Grk~~l~~~ 87 (357)
+.+....+..+...++.....+.+|.+.+ ++ .+..+.|++.+++.++..++.+++|+++||+|||++++.+
T Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~-~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~r~~l~~~ 98 (451)
T 1pw4_A 28 QIFLGIFFGYAAYYLVRKNFALAMPYLVE--------QG-FSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAG 98 (451)
T ss_dssp HHHHHHHHHHHHHHHHHTSHHHHHHHTTS--------ST-TCSSCHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------Hh-ccHhHHHHHHHHHHHHHHHHHHhHHHHHHhcCchHHHHHH
Confidence 34556677777778888888888887754 33 4555679999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHH----ccchhHHHHHHHHHHHhhhcccchHHHHHHHHHhhCCCccchhHHHHHHHHHHHHHHHhhHhh
Q 018388 88 LTLSIIPLAILAY----RRSISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASFVCGTLA 163 (357)
Q Consensus 88 ~~~~~~~~~~~~~----~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~ 163 (357)
.++.+++.+++++ +++ ++.++++|+++|+ +.+...+...+++.|++|+|+|++++++.+....+|..+||.+
T Consensus 99 ~~~~~~~~~~~~~~~~~~~~---~~~l~~~~~l~G~-~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~ 174 (451)
T 1pw4_A 99 LILAAAVMLFMGFVPWATSS---IAVMFVLLFLCGW-FQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLL 174 (451)
T ss_dssp HHHHHHHHHHHHHCHHHHSS---SSHHHHHHHHHHH-HHHHTHHHHHHHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHHH
T ss_pred HHHHHHHHHHHHhhhhcccc---HHHHHHHHHHHHH-HhhhccchHHHHHHHHCCchhhhHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999 888 8888999999999 7777889999999999999999999999999999999999999
Q ss_pred hHHh----h-hHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCCCCcccccccccccccCCCCCCCCccccccchhHHHH
Q 018388 164 ARFL----S-TTSAFQAATIVSMLAAAYMRVFLKDDVPNDDDDDLTRPIITEETEGVNQNESNSPVKIPVCKKIPSIRDL 238 (357)
Q Consensus 164 ~~~l----~-~~~~f~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (357)
++.+ + ||+.|++.+++.++..++.++.+||++++.+.+.+.+... +.++ +.+.+ .++..+.++.
T Consensus 175 ~~~l~~~~g~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~-~~~~~---~~~~~~~~~~ 243 (451)
T 1pw4_A 175 FLLGMAWFNDWHAALYMPAFCAILVALFAFAMMRDTPQSCGLPPIEEYKN-------DYPD-DYNEK---AEQELTAKQI 243 (451)
T ss_dssp HHHHHHHTCCSTTCTHHHHHHHHHHHHHHHHHCCCSSTTTCCCSCTTTCC-------C-----------------CCTHH
T ss_pred HHHHHHHhccHHHHHHHHHHHHHHHHHHHHhhccCCHhhcCCCChhhhcc-------cccc-cchhh---hhcccccccc
Confidence 8874 6 9999999998877777777777888765543221110000 0000 00000 0001111221
Q ss_pred -HHhhhcccchHHHHHHHHHHHHhhhhhhHHHHHhhhhhcccCcchHHHHHHHHHHHHHHHHHHHHhhhhhcc--chhHH
Q 018388 239 -ICLLRSSVTLSQAAVVAFFSGLSEGGMQASFLYFLKAQFHFNKNQFADLMLIAGLAGTISQLLFMPLLAPIL--GEAKL 315 (357)
Q Consensus 239 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~--~~~~~ 315 (357)
.+...++|.++...+..++..........++|.|+++.+|+++.+.+...+...++.+++. ++.+++.||+ ++|+.
T Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~-~~~g~l~~~~~~~~~~~ 322 (451)
T 1pw4_A 244 FMQYVLPNKLLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGT-LLCGWMSDKVFRGNRGA 322 (451)
T ss_dssp HHHHTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHBTTBSCCCHHHHHHHHHHHHHHHHHHH-HHHHHHHHHTSTTCHHH
T ss_pred hHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhcCCchh
Confidence 2335668889999999999888889999999999999889999999999999999999988 8889999999 99988
Q ss_pred HHHHHHHHH-HHHHHHHhcC
Q 018388 316 LSLGLFAAC-INMFICSISW 334 (357)
Q Consensus 316 ~~~~~~~~~-i~~~~~~~~~ 334 (357)
+..+..+.. ++++++.+.+
T Consensus 323 ~~~~~~~~~~~~~~~~~~~~ 342 (451)
T 1pw4_A 323 TGVFFMTLVTIATIVYWMNP 342 (451)
T ss_dssp HHHHHHHHHHHHHHHTTSCC
T ss_pred HHHHHHHHHHHHHHHHHHhc
Confidence 877776666 6666665553
No 3
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=99.97 E-value=5.4e-31 Score=232.95 Aligned_cols=299 Identities=13% Similarity=0.101 Sum_probs=233.4
Q ss_pred hHHHHHHHHHHHHHHhhHhhHHHHHHHHhcCCCccchhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcCcchhhhHHHHH
Q 018388 11 SHLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTLPLTL 90 (357)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~Grk~~l~~~~~~ 90 (357)
..+....++..++.....|.+|.+.+ +++.+..+.|++.+.+.++..+++++.|+++||+|||+++..+.++
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~ 74 (375)
T 2gfp_A 3 LMLVLLVAVGQMAQTIYIPAIADMAR--------DLNVREGAVQSVMGAYLLTYGVSQLFYGPISDRVGRRPVILVGMSI 74 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHT--------TSSSTTHHHHHHHHHHHHHHHHHHTTHHHHHTTSCCCCCCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhhhHHHHH--------HcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHH
Confidence 45677778888899999999998764 4566667889999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHccchhHHHHHHHHHHHhhhcccchHHHHHHHHHhhCCCccchhHHHHHHHHHHHHHHHhhHhhhHHh---
Q 018388 91 SIIPLAILAYRRSISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASFVCGTLAARFL--- 167 (357)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l--- 167 (357)
..++..+..++++ ++.+++.|+++|+ +.+...+...+++.|+.|+|+|+++++..+....+|..+||.+++.+
T Consensus 75 ~~~~~~~~~~~~~---~~~l~~~~~l~g~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~ 150 (375)
T 2gfp_A 75 FMLATLVAVTTSS---LTVLIAASAMQGM-GTGVGGVMARTLPRDLYERTQLRHANSLLNMGILVSPLLAPLIGGLLDTM 150 (375)
T ss_dssp HHHHHHHHHHHHH---HHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHTSSCCSHHHHHHHHHHHHHHHHHHHHHHSSCH
T ss_pred HHHHHHHHHHhcc---HHHHHHHHHHHHH-HHHhhhhhHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHh
Confidence 9999999999988 8999999999999 77888899999999999999999999999999999999999999875
Q ss_pred -hhHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCCCCcccccccccccccCCCCCCCCccccccchhHHHHHHhhhccc
Q 018388 168 -STTSAFQAATIVSMLAAAYMRVFLKDDVPNDDDDDLTRPIITEETEGVNQNESNSPVKIPVCKKIPSIRDLICLLRSSV 246 (357)
Q Consensus 168 -~~~~~f~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (357)
+||+.|++.+++..+..+...+.+||++++++++ ++..++.++ ..++|
T Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------------------~~~~~~~~~----~~~~~ 199 (375)
T 2gfp_A 151 WNWRACYLFLLVLCAGVTFSMARWMPETRPVDAPR---------------------------TRLLTSYKT----LFGNS 199 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHCCCCCSSCCCSTTTCCC---------------------------CCTTTCSTH----HHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHCcccCCCCccc---------------------------ccHHHHHHH----HhcCc
Confidence 8999999988886666554556677765432221 000111222 33467
Q ss_pred chHHHHHHHHHHHHhhhhhhHHHHHhhhhhcccCcchHHHHHHHHHHHHHHHHHHHHhhhhhccchhHHHHHHHHH-HHH
Q 018388 247 TLSQAAVVAFFSGLSEGGMQASFLYFLKAQFHFNKNQFADLMLIAGLAGTISQLLFMPLLAPILGEAKLLSLGLFA-ACI 325 (357)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~-~~i 325 (357)
+++...+..++..........+.|.|.++.+|.++.+.+.......++..++. ++.+++.||.+++ ...+... ...
T Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~-~~~~~l~~r~~~~--~~~~~~~~~~~ 276 (375)
T 2gfp_A 200 GFNCYLLMLIGGLAGIAAFEACSGVLMGAVLGLSSMTVSILFILPIPAAFFGA-WFAGRPNKRFSTL--MWQSVICCLLA 276 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCSCSSHHHHHHHHHHHHHHHHTHHHHHHHHH-HHHHTTTTHHHHH--HHHHHHHHHHT
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHH--HHHHHHHHHHH
Confidence 78888888888888888899999999999789999999999999999999988 8889999998873 2233322 222
Q ss_pred HHH--HHHh--cCcchHHHH-HHHHHHhhhccccc
Q 018388 326 NMF--ICSI--SWSAWVPYA-TTAFSVLVVFATPS 355 (357)
Q Consensus 326 ~~~--~~~~--~~~~~~~~~-~~~~~~~~~~~~p~ 355 (357)
+.. .... .++.+..+. ..+.+++.+...|.
T Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~ 311 (375)
T 2gfp_A 277 GLLMWIPDWFGVMNVWTLLVPAALFFFGAGMLFPL 311 (375)
T ss_dssp SSSSSHHHHHHHHHHHHHHHHHHHHHHHHHHTSST
T ss_pred HHHHHHHhhhccccHHHHHHHHHHHHHHHHHhhHH
Confidence 222 2222 123333333 45567777766664
No 4
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=99.97 E-value=1.2e-29 Score=232.27 Aligned_cols=311 Identities=13% Similarity=0.093 Sum_probs=211.4
Q ss_pred HHHHHHHHHHHhhHhhHHHHHHHHhcCCCccchhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcCcchhhhHHHHHHHHH
Q 018388 15 VTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTLPLTLSIIP 94 (357)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~Grk~~l~~~~~~~~~~ 94 (357)
++.++.+++.+++.+.+|.+.++...+.+.+.+.+..+.|++.+.+.++..++++++|+++||+|||++++++.++..++
T Consensus 19 lg~~~~Gyd~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~G~~iG~~~~G~laDr~GRk~~l~~~~~l~~i~ 98 (491)
T 4gc0_A 19 LGGLLFGYDTAVISGTVESLNTVFVAPQNLSESAANSLLGFCVASALIGCIIGGALGGYCSNRFGRRDSLKIAAVLFFIS 98 (491)
T ss_dssp HHHHHHHHHHHGGGGTHHHHHHHHTGGGCCCHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 44566777788888888888777544444455677788899999999999999999999999999999999999999999
Q ss_pred HHHHHH------------------ccchhHHHHHHHHHHHhhhcccchHHHHHHHHHhhCCCccchhHHHHHHHHHHHHH
Q 018388 95 LAILAY------------------RRSISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSAS 156 (357)
Q Consensus 95 ~~~~~~------------------~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g 156 (357)
.+++++ ++| ++.++++|+++|+ +.|...+....+++|+.|+++|++..+..+.+...|
T Consensus 99 ~i~~a~~~~~~~~~~~~~~~~~~~a~~---~~~l~~~R~l~G~-g~G~~~~~~~~~i~E~~p~~~rg~~~~~~~~~~~~g 174 (491)
T 4gc0_A 99 GVGSAWPELGFTSINPDNTVPVYLAGY---VPEFVIYRIIGGI-GVGLASMLSPMYIAELAPAHIRGKLVSFNQFAIIFG 174 (491)
T ss_dssp HHHHHCTTTTTSCSSSSSSCCGGGGGC---HHHHHHHHHHHHH-HHHHHHHHHHHHHHTTSCGGGHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhhhhhcchhHHHHHHhhh---HHHHHHHHHHHHH-HHHHHHHHHHHHHHhhCCHHhhhhhHHhhhhhhhhh
Confidence 999884 677 8999999999999 778888999999999999999999999999999999
Q ss_pred HHhhHhhhHHh------------hhHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCCCCcccccccccccccCCCCCCC
Q 018388 157 FVCGTLAARFL------------STTSAFQAATIVSMLAAAYMRVFLKDDVPNDDDDDLTRPIITEETEGVNQNESNSPV 224 (357)
Q Consensus 157 ~~~g~~~~~~l------------~~~~~f~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 224 (357)
..+++.++... .||+.+.+..+..++. +...+..||+|+....+.+.++..+..++...++..++..
T Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~peSp~~L~~~~~~~~a~~~l~~~~~~~~~~~~~ 253 (491)
T 4gc0_A 175 QLLVYCVNYFIARSGDASWLNTDGWRYMFASECIPALLF-LMLLYTVPESPRWLMSRGKQEQAEGILRKIMGNTLATQAV 253 (491)
T ss_dssp HHHHHHHHHHHHTTSCTTTTTTTHHHHHHHTTHHHHHHH-HHHGGGSCCCHHHHHHTTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhcchhhccccccccccchhhHHHhhhhhhhhhhh-hhhhhcCCCChHHHHHcCchhHHHHhHHHhcCCchhHHHH
Confidence 99988777543 4677777766664444 4445678999875332222111111110000000000000
Q ss_pred CccccccchhHHH-HHHhhhcccchHHHHHHHHHHHH-hhhhhhHHHHHhhhhhcccCcchHHHHHHHHHHHHHHHHHHH
Q 018388 225 KIPVCKKIPSIRD-LICLLRSSVTLSQAAVVAFFSGL-SEGGMQASFLYFLKAQFHFNKNQFADLMLIAGLAGTISQLLF 302 (357)
Q Consensus 225 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 302 (357)
.+.........+. .....++.+..........+... .......+.|.+.++ .+.+...........++...++. ++
T Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~-~~ 331 (491)
T 4gc0_A 254 QEIKHSLDHGRKTGGRLLMFGVGVIVIGVMLSIFQQFVGINVVLYYAPEVFKT-LGASTDIALLQTIIVGVINLTFT-VL 331 (491)
T ss_dssp HHHHHHHHHHHHHTTHHHHSCCTHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-SSCCHHHHHHHHHHHHHHHHHHH-HH
T ss_pred HHHHHHHHhhhhhhhHHHHhcccHHHHHHHHHHHHHHhhhhHHHhcchHHHHh-cCCCccchhhHHHHHHHHHHHHH-HH
Confidence 0000000000000 01112223333333333333333 333444555555554 47777666666777777777777 88
Q ss_pred HhhhhhccchhHHHHHHHHHHHHHHHHHHh
Q 018388 303 MPLLAPILGEAKLLSLGLFAACINMFICSI 332 (357)
Q Consensus 303 ~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~ 332 (357)
++++.||+|||+.+..+.....++.+.+..
T Consensus 332 ~~~l~dr~Grr~~~~~~~~~~~~~~~~l~~ 361 (491)
T 4gc0_A 332 AIMTVDKFGRKPLQIIGALGMAIGMFSLGT 361 (491)
T ss_dssp HHHHHHHHCSHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhcCcchhccchHHHHHHHHHHHH
Confidence 899999999999999888888877665543
No 5
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=99.96 E-value=5.5e-28 Score=221.32 Aligned_cols=341 Identities=13% Similarity=0.008 Sum_probs=231.0
Q ss_pred hhhhhHHHHHHHHHHHHHHhhHhhHHHHHHHHhcCCCccchhHHHHHHHHHHHHHHHHHHHHHhhhhhhhh-cCcchhhh
Q 018388 7 IKTLSHLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQ-YGRKAMLT 85 (357)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr-~Grk~~l~ 85 (357)
++.++.+....+...++.....+.++.+.++.. ..++++.+..+.|++.+.+.++..+++++.|+++|| +|||+++.
T Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~g~r~~~~ 89 (491)
T 4aps_A 12 PLGLSTLFMTEMWERFSYYGMRAILLYYMWFLI--STGDLHITRATAASIMAIYASMVYLSGTIGGFVADRIIGARPAVF 89 (491)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHTSCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCHHHHHH
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc--chhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchHHHH
Confidence 456777788888888888888888888887631 123467788889999999999999999999999999 89999999
Q ss_pred HHHHHHHHHHHHHHHccchhHHHHHHHHHHHhhhcccchHHHHHHHHHhhCCCccc--hhHHHHHHHHHHHHHHHhhHhh
Q 018388 86 LPLTLSIIPLAILAYRRSISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQ--RASAFGILLGVLSASFVCGTLA 163 (357)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~~i~~~~~~~~--r~~~~~~~~~~~~~g~~~g~~~ 163 (357)
.+.++..++.++++++++ ++.++++|+++|+ +.+...+...+++.|++|+++ |+++++..+...++|..+||.+
T Consensus 90 ~~~~~~~~~~~~~~~~~~---~~~~~~~~~l~g~-~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~ 165 (491)
T 4aps_A 90 WGGVLIMLGHIVLALPFG---ASALFGSIILIII-GTGFLKPNVSTLVGTLYDEHDRRRDAGFSIFVFGINLGAFIAPLI 165 (491)
T ss_dssp HHHHHHHHHHHHHHSCCS---TTHHHHHHHHHHH-HHHHHHHHHHHHHHHHSSSCTTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhh---HHHHHHHHHHHHH-HHHhccchHHHHHHHHcCcccccceeeehHHHHHHHHHHHHHHHH
Confidence 999999999999999999 8888999999999 778888999999999999988 7778888999999999999999
Q ss_pred hHHh----hhHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCCCCccccccccccccc----------------CCCCCC
Q 018388 164 ARFL----STTSAFQAATIVSMLAAAYMRVFLKDDVPNDDDDDLTRPIITEETEGVNQ----------------NESNSP 223 (357)
Q Consensus 164 ~~~l----~~~~~f~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~----------------~~~~~~ 223 (357)
++.+ +||+.|++.++..++..+...+..|+..++++++.+.+...+..++..+. ..+..+
T Consensus 166 ~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~ 245 (491)
T 4aps_A 166 VGAAQEAAGYHVAFSLAAIGMFIGLLVYYFGGKKTLDPHYLRPTDPLAPEEVKPLLVKVSLAVAGFIAIIVVMNLVGWNS 245 (491)
T ss_dssp HHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHTTCCSCCSCCSCCCSHHHHHHHHHHCCCCCHHHHHHHHHHHHHSSCC
T ss_pred HHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhCcccccccccCCCCccccchhHHHHHHHHHHHHHHHHHHHHHHhccCcc
Confidence 8875 89999999877766655554444344322221111100000000000000 000000
Q ss_pred CCcccc----------------ccchhHHHHHHhhhcccchHHHHHHHHHHHHhhhhhhHHHHHhhhhhcccCcchHHHH
Q 018388 224 VKIPVC----------------KKIPSIRDLICLLRSSVTLSQAAVVAFFSGLSEGGMQASFLYFLKAQFHFNKNQFADL 287 (357)
Q Consensus 224 ~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 287 (357)
.++... ..++...+ .+..++........+..+...........++|.|.++..+.+..+.+..
T Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 324 (491)
T 4aps_A 246 LPAYINLLTIVAIAIPVFYFAWMISSVKVT-STEHLRVVSYIPLFIAAVLFWAIEEQGSVVLATFAAERVDSSWFPVSWF 324 (491)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHC-------------CTTHHHHHHHHHHHHHHHGGGGTHHHHHHHHSCCCSSSCSGGG
T ss_pred cccchhhhhHHHHHHHHHHHHHHhhccccc-HHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHhccCccCHHHH
Confidence 000000 00000000 0001112234455556666667777778889999998888886677888
Q ss_pred HHHHHHHHHHHHHHHHhhhhhccchhHHHH-----HHHHHHHHHHHHHHhcC---------cchHHHH-HHHHHHhhhcc
Q 018388 288 MLIAGLAGTISQLLFMPLLAPILGEAKLLS-----LGLFAACINMFICSISW---------SAWVPYA-TTAFSVLVVFA 352 (357)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-----~~~~~~~i~~~~~~~~~---------~~~~~~~-~~~~~~~~~~~ 352 (357)
.....+...++. .+.+++.||++||+... .+..+.+++++++.... +.+.... ..+.+++.+..
T Consensus 325 ~~~~~~~~~~~~-~~~~~l~~r~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~ 403 (491)
T 4aps_A 325 QSLNPLFIMLYT-PFFAWLWTAWKKNQPSSPTKFAVGLMFAGLSFLLMAIPGALYGTSGKVSPLWLVGSWALVILGEMLI 403 (491)
T ss_dssp TTHHHHHHHHHH-HHHHHHHHHTTTC---CHHHHHHHHHHHHHHHTTTHHHHHHCCCCTTCCTHHHHHHHHHHHHHHHTT
T ss_pred hccchHHHHHHH-HHHHHHHHHHhccCCCchHHHHHHHHHHHHHHHHHHHHHHhcCCCCCccHHHHHHHHHHHHHHHHHH
Confidence 888888888888 77799999999876544 67777777765555421 3333333 45567776665
Q ss_pred ccc
Q 018388 353 TPS 355 (357)
Q Consensus 353 ~p~ 355 (357)
.|.
T Consensus 404 ~~~ 406 (491)
T 4aps_A 404 SPV 406 (491)
T ss_dssp TTH
T ss_pred hHH
Confidence 553
No 6
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Probab=99.93 E-value=8.9e-26 Score=202.26 Aligned_cols=299 Identities=17% Similarity=0.143 Sum_probs=189.6
Q ss_pred hhhhhHHHHHHHHHHHHHHhhHhhHHHHHHHHhcCCCccchhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcCcchhhhH
Q 018388 7 IKTLSHLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTL 86 (357)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~Grk~~l~~ 86 (357)
+|+++.+....++...+.....|.+|.++++. .+.+..+.|++.+.+.++..++++++|+++||+|||++++.
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-------~g~s~~~~g~~~~~~~~~~~i~~~~~G~lsDr~Grr~~l~~ 78 (417)
T 2cfq_A 6 NTNFWMFGLFFFFYFFIMGAYFPFFPIWLHDI-------NHISKSDTGIIFAAISLFSLLFQPLFGLLSDKLGLRKYLLW 78 (417)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHTTTHHHHHHTT-------TCCCTTTSHHHHHHHHHHHHHHHHHHHHHHTTSTTCCHHHH
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------hCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHH
Confidence 45666777777788888888899999998752 33444556999999999999999999999999999999998
Q ss_pred HHHHHHHHHHHH---HHccchhHHHHHHHHHHHhhhcccchHHHHHHHHHhhCCCc--cchhHHHHHHHHHHHHHHHhhH
Q 018388 87 PLTLSIIPLAIL---AYRRSISFFYAYYALRTLTAMVCEGSINCLALAYVADNISE--RQRASAFGILLGVLSASFVCGT 161 (357)
Q Consensus 87 ~~~~~~~~~~~~---~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~~i~~~~~~--~~r~~~~~~~~~~~~~g~~~g~ 161 (357)
+..+..+..... .+++.. ...+...+.+.|+ ..+...+.....+.++.++ ++|+...+.......+|..++|
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~ 155 (417)
T 2cfq_A 79 IITGMLVMFAPFFIFIFGPLL--QYNILVGSIVGGI-YLGFCFNAGAPAVEAFIEKVSRRSNFEFGRARMFGCVGWALGA 155 (417)
T ss_dssp HHHHTTSCHHHHHHHTHHHHH--HTTCCHHHHGGGS-STTHHHHTTHHHHHHHHHHHHHHHTCCHHHHSSSTTTHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHH-HHHHHHhhhHHHHHHHHHHhhhhcccchHHHHHHHHHHHHHHH
Confidence 887765432111 222210 0112345566565 4344333333444444332 3556667777777888999999
Q ss_pred hhhHHh---hhHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCCCCcccccccccccccCCCCCCCCccccccchhHHHH
Q 018388 162 LAARFL---STTSAFQAATIVSMLAAAYMRVFLKDDVPNDDDDDLTRPIITEETEGVNQNESNSPVKIPVCKKIPSIRDL 238 (357)
Q Consensus 162 ~~~~~l---~~~~~f~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (357)
.+++++ +||+.|++.++..++..+. .+..||+++++.++. +.++++ +++.+.++.
T Consensus 156 ~l~~~l~~~~~~~~f~~~~~~~~~~~~~-~~~~~~~~~~~~~~~-------------~~~~~~--------~~~~~~~~~ 213 (417)
T 2cfq_A 156 SIVGIMFTINNQFVFWLGSGCALILAVL-LFFAKTDAPSSATVA-------------NAVGAN--------HSAFSLKLA 213 (417)
T ss_dssp HHHHHHHHHCSHHHHTTTTTTTTTHHHH-SCSSCCCCSCSSCSS-------------SSSSSC--------CCCCCHHHH
T ss_pred HHHHHHHHhchhHHHHHHHHHHHHHHHH-HHHcCcccccccccc-------------cccccc--------cccccHHHH
Confidence 888875 6899998776664433333 333333221111100 000000 001122232
Q ss_pred HHhhhcccchHHHHHHHHHHHHhhhhhhHHHHHhhhhhcc---cCcchHHHHHHHHHHHHHHHHHHHHhhhhhccchhHH
Q 018388 239 ICLLRSSVTLSQAAVVAFFSGLSEGGMQASFLYFLKAQFH---FNKNQFADLMLIAGLAGTISQLLFMPLLAPILGEAKL 315 (357)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g---~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 315 (357)
.+ +.++|+++...+..+.....+.....++|.|+++.++ .+....+...+...+...++. ++.+++.||+++|+.
T Consensus 214 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~-~~~g~l~dr~g~~~~ 291 (417)
T 2cfq_A 214 LE-LFRQPKLWFLSLYVIGVSCTYDVFDQQFANFFTSFFATGEQGTRVFGYVTTMGELLNASIM-FFAPLIINRIGGKNA 291 (417)
T ss_dssp HH-HTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSSHHHHTHHHHHHHHHHHHHHHHHH-HHHHHHHHHHCHHHH
T ss_pred HH-HhcCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHHH-HHHHHHHHHhcHHHH
Confidence 22 3446777666665555555555666778888876654 234455777777777777777 888999999999999
Q ss_pred HHHHHHHHHHHHHHHHhcCcchHH
Q 018388 316 LSLGLFAACINMFICSISWSAWVP 339 (357)
Q Consensus 316 ~~~~~~~~~i~~~~~~~~~~~~~~ 339 (357)
+..+..+.+++.+.+.+.++.+..
T Consensus 292 l~~~~~~~~~~~~~~~~~~~~~~~ 315 (417)
T 2cfq_A 292 LLLAGTIMSVRIIGSSFATSALEV 315 (417)
T ss_dssp HHHHHHHHHHHHHHHTTCCSHHHH
T ss_pred HHHHHHHHHHHHHHHHHhccHHHH
Confidence 988888888877666666554443
No 7
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=99.91 E-value=2.3e-23 Score=192.23 Aligned_cols=178 Identities=15% Similarity=0.148 Sum_probs=147.4
Q ss_pred hhhhhhHHHHHHHHHHHHHHhhHhhHHHHHHHHhcCCCccchhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhc-Ccchhh
Q 018388 6 EIKTLSHLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQY-GRKAML 84 (357)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~-Grk~~l 84 (357)
+++.++.+.+..++..++.....+.++.++.+..+++ .+.+.+..+.|++.+++.++..++.++.|+++||+ |||+++
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~-~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~~g~r~~~ 88 (524)
T 2xut_A 10 WPRQIPYIIASEACERFSFYGMRNILTPFLMTALLLS-IPEELRGAVAKDVFHSFVIGVYFFPLLGGWIADRFFGKYNTI 88 (524)
T ss_dssp ---CCTHHHHHHHHHHHHHHHHHHHHHHHHHHSCSSC-CSSSTTTTTHHHHHHHHHHHHHHTHHHHHHHHTTSSCSHHHH
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc-cccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHH
Confidence 3556778888888898988888889998887633211 01225566779999999999999999999999999 999999
Q ss_pred hHHHHHHHHHHHHHHHcc-chhHHHHHHHHHHHhhhcccchHHHHHHHHHhhCCCccchhHHHHH---HHHHHHHHHHhh
Q 018388 85 TLPLTLSIIPLAILAYRR-SISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGI---LLGVLSASFVCG 160 (357)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~r~l~G~~~~~~~~~~~~~~i~~~~~~~~r~~~~~~---~~~~~~~g~~~g 160 (357)
..+.++..++.+++.+++ + ++.+++.|++.|+ +.+...+...+++.|++|+++|+++.+. .+...++|..+|
T Consensus 89 ~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~l~g~-~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~g 164 (524)
T 2xut_A 89 LWLSLIYCVGHAFLAIFEHS---VQGFYTGLFLIAL-GSGGIKPLVSSFMGDQFDQSNKSLAQKAFDMFYFTINFGSFFA 164 (524)
T ss_dssp HHHHHHHHHHHHHHHHTSSC---HHHHHHHHHHHHH-HHHTTHHHHHHHHHHTCSTTTTTHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhccc---HHHHHHHHHHHHH-hccccchhHHHHHHHHcCccchHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999998 8 8889999999999 7677789999999999999999876666 888999999999
Q ss_pred HhhhHHh----hhHHHHHHHHHHHHHHHHHHH
Q 018388 161 TLAARFL----STTSAFQAATIVSMLAAAYMR 188 (357)
Q Consensus 161 ~~~~~~l----~~~~~f~~~~~~~~~~~~~~~ 188 (357)
|.+++.+ +||+.|++.+++.++..+...
T Consensus 165 ~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~ 196 (524)
T 2xut_A 165 SLSMPLLLKNFGAAVAFGIPGVLMFVATVFFW 196 (524)
T ss_dssp HHTSTHHHHTSCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhccccHHHHHHHHHHHHHHHHHHHH
Confidence 9988765 799999998877665544433
No 8
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Probab=99.56 E-value=1.3e-13 Score=123.11 Aligned_cols=166 Identities=12% Similarity=0.069 Sum_probs=123.5
Q ss_pred HHHhhHhhHHHHHHHHhcCCCccchhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcCcchhhhHHHHHHHHHHHHHHHcc
Q 018388 23 ATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTLPLTLSIIPLAILAYRR 102 (357)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~Grk~~l~~~~~~~~~~~~~~~~~~ 102 (357)
........+|.+..+.. .+.+.+....|+..++..++..++.++.|+++||+|||+.+..+.++.+++....++.+
T Consensus 235 ~~~~~~~~~~~~~~~~~----~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~l~~~~~~~~~~~~~~~~~~ 310 (417)
T 2cfq_A 235 TYDVFDQQFANFFTSFF----ATGEQGTRVFGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFAT 310 (417)
T ss_dssp HHHHHHHHHHHHHHHTS----SSHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHHHHH----hccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhc
Confidence 33333344677765532 11233344568888888888899999999999999999999988888888777777777
Q ss_pred chhHHHHHHHHHHHhhhcccchHHHHHHHHHhhCCCccchhHHHHH-HHHHHHHHHHhhHhhhHHh----hhHHHHHHHH
Q 018388 103 SISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGI-LLGVLSASFVCGTLAARFL----STTSAFQAAT 177 (357)
Q Consensus 103 ~~~~~~~~~~~r~l~G~~~~~~~~~~~~~~i~~~~~~~~r~~~~~~-~~~~~~~g~~~g~~~~~~l----~~~~~f~~~~ 177 (357)
+ .+.+++..++.++ +.+...+....++.|..|+|.|+++.+. .+....+|..+||.++|.+ +++..|.+.+
T Consensus 311 ~---~~~~~~~~~l~~~-~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~lg~~~gp~l~G~l~~~~g~~~~f~~~~ 386 (417)
T 2cfq_A 311 S---ALEVVILKTLHMF-EVPFLLVGCFKYITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESIGFQGAYLVLG 386 (417)
T ss_dssp S---HHHHHHHTTHHHH-HHHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTHHHHHHHHTHHHHTHHHHSHHHHHHHHHH
T ss_pred c---HHHHHHHHHHHHH-HHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHhHHHHHhhhhHHHHHHhcCcHHHHHHHH
Confidence 7 6666777777777 4455556678899999999999999998 4788889999999888865 6777888887
Q ss_pred HHHHHHHHHHHHhccCCCC
Q 018388 178 IVSMLAAAYMRVFLKDDVP 196 (357)
Q Consensus 178 ~~~~~~~~~~~~~~~e~~~ 196 (357)
++.++..+..++..||+++
T Consensus 387 ~~~l~~~~~~~~~~~~~~~ 405 (417)
T 2cfq_A 387 LVALGFTLISVFTLSGPGP 405 (417)
T ss_dssp HHHHHHHHHHTTSSCCSCT
T ss_pred HHHHHHHHHHHhhhcCCCc
Confidence 7767666665555665443
No 9
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=99.52 E-value=1.1e-13 Score=124.84 Aligned_cols=174 Identities=10% Similarity=-0.036 Sum_probs=138.3
Q ss_pred hhhhHHHHHHHHHHHHHHhhHhhHHHHHHHHhcCCCccchhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhc--Ccchhhh
Q 018388 8 KTLSHLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQY--GRKAMLT 85 (357)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~--Grk~~l~ 85 (357)
+.++...+..++...........+|.+.++ ..+.+..+.|++.+...++..++.++.|+++||+ |||+.+.
T Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~ 324 (451)
T 1pw4_A 252 KLLWYIAIANVFVYLLRYGILDWSPTYLKE-------VKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATG 324 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHBTT-------BSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------hcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHH
Confidence 456666777777777777777888888643 3566677889999999999999999999999999 9999988
Q ss_pred HHHHHHH-HHHHHHHHccchhHHHHHHHHHHHhhhcccchHHHHHHHHHhhCCCccchhHHHHHHHHHHHH-HHHhhHhh
Q 018388 86 LPLTLSI-IPLAILAYRRSISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSA-SFVCGTLA 163 (357)
Q Consensus 86 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~-g~~~g~~~ 163 (357)
.+..+.. ++.++..+.++.+ .+.+.+..++.|+ +.+...+...+++.|..|+++|++++++.+....+ |..++|.+
T Consensus 325 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~g~-~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~~~~~~~ 402 (451)
T 1pw4_A 325 VFFMTLVTIATIVYWMNPAGN-PTVDMICMIVIGF-LIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAI 402 (451)
T ss_dssp HHHHHHHHHHHHHTTSCCTTC-HHHHHHHHHHHHH-HHTHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcccC-HHHHHHHHHHHHH-HHhchHHHHHHHHHHHhchhhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 8777666 6666666653211 5666777788888 55666678889999999999999999999999999 99999999
Q ss_pred hHHh----hhHHHHHHHHHHHHHHHHHHHHh
Q 018388 164 ARFL----STTSAFQAATIVSMLAAAYMRVF 190 (357)
Q Consensus 164 ~~~l----~~~~~f~~~~~~~~~~~~~~~~~ 190 (357)
.+.+ +|+..|++.+++.++..++.++.
T Consensus 403 ~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~ 433 (451)
T 1pw4_A 403 VGYTVDFFGWDGGFMVMIGGSILAVILLIVV 433 (451)
T ss_dssp HHHHHHSSCSHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCcHHHHHHHHHHHHHHHHHHHHH
Confidence 8875 78889988888766666555443
No 10
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=99.40 E-value=9.7e-12 Score=111.61 Aligned_cols=160 Identities=8% Similarity=-0.065 Sum_probs=124.4
Q ss_pred hhhhHHHHHHHHHHHHHHhhHhhHHHH-HHHHhcCCCccchhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcCcchhhhH
Q 018388 8 KTLSHLFVTVFLWGFATMMVVPAITDV-TMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTL 86 (357)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~Grk~~l~~ 86 (357)
+.++...+..++...........+|.+ .++ ..+.+..+.|+..+...++..++.++.|+++||+|||+.+..
T Consensus 258 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~ 330 (438)
T 3o7q_A 258 RHWRWAVLAQFCYVGAQTACWSYLIRYAVEE-------IPGMTAGFAANYLTGTMVCFFIGRFTGTWLISRFAPHKVLAA 330 (438)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------STTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc-------cCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHH
Confidence 445566666666666677777888888 765 335556778999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHccchhHHHHHHHHHHHhhhcccchHHHHHHHHHhhCCCccchhHHHHHHHHHHHHHHHhhHhhhHH
Q 018388 87 PLTLSIIPLAILAYRRSISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASFVCGTLAARF 166 (357)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~ 166 (357)
+.++..++.++..+.++ .+... .-++.|+ +.+...+...++..|..|++ |+++.++.. ...+|..++|.+.+.
T Consensus 331 ~~~~~~~~~~~~~~~~~---~~~~~-~~~~~g~-~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~g~~~~~~~~g~ 403 (438)
T 3o7q_A 331 YALIAMALCLISAFAGG---HVGLI-ALTLCSA-FMSIQYPTIFSLGIKNLGQD-TKYGSSFIV-MTIIGGGIVTPVMGF 403 (438)
T ss_dssp HHHHHHHHHHHHHHCCH---HHHHH-HHHHHHH-HHTTHHHHHHHHHHSSCGGG-HHHHHHHHH-HTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCC---cHHHH-HHHHHHH-HHHHHHHHHHHHHHhhcccc-ccchhhHHH-HHHHHHHHHHHHHHH
Confidence 99999988888888877 44333 3367777 55666788999999999865 888888776 566889999988887
Q ss_pred h----h-hHHHHHHHHHHHH
Q 018388 167 L----S-TTSAFQAATIVSM 181 (357)
Q Consensus 167 l----~-~~~~f~~~~~~~~ 181 (357)
+ + ++..|++.++..+
T Consensus 404 l~~~~g~~~~~~~~~~~~~~ 423 (438)
T 3o7q_A 404 VSDAAGNIPTAELIPALCFA 423 (438)
T ss_dssp HHHHHTSSGGGGHHHHHHHH
T ss_pred HHHHhcchHHHHHHHHHHHH
Confidence 5 5 7778877655433
No 11
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=99.36 E-value=3.7e-11 Score=109.51 Aligned_cols=143 Identities=14% Similarity=0.125 Sum_probs=102.4
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhhhcCcchhhhHHHHHHHHHHHHHHHc---cchhHHHHHHHHHHHhhhcccchHHHHHH
Q 018388 54 GFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTLPLTLSIIPLAILAYR---RSISFFYAYYALRTLTAMVCEGSINCLAL 130 (357)
Q Consensus 54 g~~~~~~~~~~~i~~~~~G~l~dr~Grk~~l~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~r~l~G~~~~~~~~~~~~ 130 (357)
........+...++.++.+.+.||+|||+.++.+.....++....+.. .+..........-+..++ +.+ ..+...
T Consensus 315 ~~~~~~~~~~~~~~~~~~~~l~dr~Grr~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~~~~ 392 (491)
T 4gc0_A 315 LLQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFYTQAPGIVALLSMLFYVAAF-AMS-WGPVCW 392 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHH-HTT-TTHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHhhcCcchhccchHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHH-HhH-HHHHHH
Confidence 444556677888899999999999999999998888777776655432 111111222222222222 222 336788
Q ss_pred HHHhhCCCccchhHHHHHHHHHHHHHHHhhHhhhHHh----------hhHHHHHHHHHHHHHHHHHHHHhccCCCCCC
Q 018388 131 AYVADNISERQRASAFGILLGVLSASFVCGTLAARFL----------STTSAFQAATIVSMLAAAYMRVFLKDDVPND 198 (357)
Q Consensus 131 ~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l----------~~~~~f~~~~~~~~~~~~~~~~~~~e~~~~~ 198 (357)
.+.+|.+|.+.|++++++......+|..+++.+...+ ++.+.|++.++++++..+..++++||++.+.
T Consensus 393 ~~~~E~fPt~~R~~~~g~~~~~~~~~~~i~~~~~p~l~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~~~PETkg~t 470 (491)
T 4gc0_A 393 VLLSEIFPNAIRGKALAIAVAAQWLANYFVSWTFPMMDKNSWLVAHFHNGFSYWIYGCMGVLAALFMWKFVPETKGKT 470 (491)
T ss_dssp HHHHHSSCTTTHHHHHHHHHHHHHHHHHHHHTHHHHHCHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHCCCCTTCC
T ss_pred HHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHheecCCCCCC
Confidence 8999999999999999999999988888877654432 3456788888888888888889999987654
No 12
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=99.35 E-value=4.5e-12 Score=115.62 Aligned_cols=177 Identities=10% Similarity=0.043 Sum_probs=122.9
Q ss_pred hHHHHHHHHHHHHHHhhHhhHHHHHHHHhcCCCccchhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcCcchhhh-----
Q 018388 11 SHLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLT----- 85 (357)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~Grk~~l~----- 85 (357)
..+.+..++...........+|.+.++..+.+. ...++..+...++..++.++.|++.||+|||+...
T Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~r~~~~~~~~~ 358 (491)
T 4aps_A 286 IPLFIAAVLFWAIEEQGSVVLATFAAERVDSSW-------FPVSWFQSLNPLFIMLYTPFFAWLWTAWKKNQPSSPTKFA 358 (491)
T ss_dssp HHHHHHHHHHHHHHGGGGTHHHHHHHHSCCCSS-------SCSGGGTTHHHHHHHHHHHHHHHHHHHTTTC---CHHHHH
T ss_pred HHHHHHHHHHHHHHhhccHHHHHHHHHHhccCc-------cCHHHHhccchHHHHHHHHHHHHHHHHHhccCCCchHHHH
Confidence 334444555555566666777888876432221 12256666778888899999999999999997665
Q ss_pred HHHHHHHHHHHHHHHcc------chhHHHHHHHHHHHhhhcccchHHHHHHHHHhhCCCccchhHHHHHHHHHHHHHHHh
Q 018388 86 LPLTLSIIPLAILAYRR------SISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASFVC 159 (357)
Q Consensus 86 ~~~~~~~~~~~~~~~~~------~~~~~~~~~~~r~l~G~~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~ 159 (357)
.+.++..++..+..... +....+.+.+.-++.|+ +.+...+...+++.|..|+++|+++.++......+|..+
T Consensus 359 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~-~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~i 437 (491)
T 4aps_A 359 VGLMFAGLSFLLMAIPGALYGTSGKVSPLWLVGSWALVIL-GEMLISPVGLSVTTKLAPKAFNSQMMSMWFLSSSVGSAL 437 (491)
T ss_dssp HHHHHHHHHHTTTHHHHHHCCCCTTCCTHHHHHHHHHHHH-HHHTTTTHHHHHHHHHTTTTCSSSSTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCCCccHHHHHHHHHHHHH-HHHHHhHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHH
Confidence 67777777766665532 00115666777888888 656666788999999999999999999999999999999
Q ss_pred hHhhhHHh---hhHHHHHHHHHHHHHHHHHHHHhccCCC
Q 018388 160 GTLAARFL---STTSAFQAATIVSMLAAAYMRVFLKDDV 195 (357)
Q Consensus 160 g~~~~~~l---~~~~~f~~~~~~~~~~~~~~~~~~~e~~ 195 (357)
+|.+.+.+ ++.+.|...+.+.++..+..++..|+.+
T Consensus 438 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 476 (491)
T 4aps_A 438 NAQLVTLYNAKSEVAYFSYFGLGSVVLGIVLVFLSKRIQ 476 (491)
T ss_dssp HHHHGGGGGGSSTTHHHHHTHHHHHHHHHHHHHC-----
T ss_pred HHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99998876 4567777777776666666665555543
No 13
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=99.03 E-value=3e-10 Score=99.78 Aligned_cols=147 Identities=7% Similarity=-0.060 Sum_probs=108.6
Q ss_pred hhhhhHHHHHHHHHHHHHHhhHhhHHHHHHHHhcCCCccchhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcCcchhhhH
Q 018388 7 IKTLSHLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTL 86 (357)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~Grk~~l~~ 86 (357)
++.++...+..++............|.+.++ +.+.+..+.|++.+...++..++.++.|++.||+|+| +..
T Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~~~~--~~~ 268 (375)
T 2gfp_A 198 NSGFNCYLLMLIGGLAGIAAFEACSGVLMGA-------VLGLSSMTVSILFILPIPAAFFGAWFAGRPNKRFSTL--MWQ 268 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHCSCSSHH-------HHHHHHHHHHHHHHTHHHHHHHHHHHHHTTTTHHHHH--HHH
T ss_pred CcchHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHH
Confidence 3455566666666666666666677777654 3567778889999999999999999999999999883 233
Q ss_pred HHHH-HHHHHH--HHHHc--cchhHHHHHHHHHHHhhhcccchHHHHHHHHHhhCCCccchhHHHHHHHHHHHHHHHhhH
Q 018388 87 PLTL-SIIPLA--ILAYR--RSISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASFVCGT 161 (357)
Q Consensus 87 ~~~~-~~~~~~--~~~~~--~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~ 161 (357)
+... ...+.. ..... ++ .+.+.+..++.|+ +.+...+...+++.|..| |+|+++.+..+....+|..++|
T Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~l~g~-~~~~~~~~~~~~~~~~~p-~~~g~~~g~~~~~~~~g~~~~~ 343 (375)
T 2gfp_A 269 SVICCLLAGLLMWIPDWFGVMN---VWTLLVPAALFFF-GAGMLFPLATSGAMEPFP-FLAGTAGALVGGLQNIGSGVLA 343 (375)
T ss_dssp HHHHHHHTSSSSSHHHHHHHHH---HHHHHHHHHHHHH-HHHHTSSTTHHHHHTHHH-HHHHHHHHHHHHHHHHHHHCCS
T ss_pred HHHHHHHHHHHHHHHhhhcccc---HHHHHHHHHHHHH-HHHHhhHHHHHHHHHhCC-cccchHHHHHHHHHHHHHHHHH
Confidence 3322 222222 12221 23 5666677788888 666777888999999998 8999999999999999999999
Q ss_pred hhhHHh
Q 018388 162 LAARFL 167 (357)
Q Consensus 162 ~~~~~l 167 (357)
.+.+.+
T Consensus 344 ~~~g~l 349 (375)
T 2gfp_A 344 SLSAML 349 (375)
T ss_dssp TTCTHH
T ss_pred HHHHHH
Confidence 988876
No 14
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=98.55 E-value=4.4e-07 Score=83.26 Aligned_cols=110 Identities=13% Similarity=0.006 Sum_probs=92.4
Q ss_pred ccchHHHHHHHHHHHHhhhhhhHHHHHhhhhhcc------cCcchHHHHHHHHHHHHHHHHHHHHhhhhhcc-chhHHHH
Q 018388 245 SVTLSQAAVVAFFSGLSEGGMQASFLYFLKAQFH------FNKNQFADLMLIAGLAGTISQLLFMPLLAPIL-GEAKLLS 317 (357)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g------~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~ 317 (357)
++.++...+..++..........+++.|+++.+| +++.+.+.+.+...++..++. ++.|++.||+ |||+.+.
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~-~~~G~l~dr~~g~r~~~~ 89 (524)
T 2xut_A 11 PRQIPYIIASEACERFSFYGMRNILTPFLMTALLLSIPEELRGAVAKDVFHSFVIGVYFFP-LLGGWIADRFFGKYNTIL 89 (524)
T ss_dssp --CCTHHHHHHHHHHHHHHHHHHHHHHHHHHSCSSCCSSSTTTTTHHHHHHHHHHHHHHTH-HHHHHHHTTSSCSHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccCHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhcchHHHH
Confidence 4567777888888888888899999999998889 999999999999999999988 8889999999 9999999
Q ss_pred HHHHHHHHHHHHHHhcC-cchHHHH-HHHHHHhhhccccc
Q 018388 318 LGLFAACINMFICSISW-SAWVPYA-TTAFSVLVVFATPS 355 (357)
Q Consensus 318 ~~~~~~~i~~~~~~~~~-~~~~~~~-~~~~~~~~~~~~p~ 355 (357)
.+..+..++.+++.+.+ +.+.+++ ..+.+++.+...|+
T Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~ 129 (524)
T 2xut_A 90 WLSLIYCVGHAFLAIFEHSVQGFYTGLFLIALGSGGIKPL 129 (524)
T ss_dssp HHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHTTHHH
T ss_pred HHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccchh
Confidence 99999999998888887 7666555 45667777766553
No 15
>2g9p_A Antimicrobial peptide latarcin 2A; helix-hinge-helix, antimicrobial protein; NMR {Synthetic}
Probab=59.08 E-value=2.7 Score=19.11 Aligned_cols=13 Identities=46% Similarity=0.951 Sum_probs=10.7
Q ss_pred hhhhhhhcCcchh
Q 018388 71 IGNLSDQYGRKAM 83 (357)
Q Consensus 71 ~G~l~dr~Grk~~ 83 (357)
+|.+..+||||.+
T Consensus 3 fgklikkfgrkai 15 (26)
T 2g9p_A 3 FGKLIKKFGRKAI 15 (26)
T ss_dssp HHHHHHHHTSHHH
T ss_pred HHHHHHHHhHHHH
Confidence 6888999999854
No 16
>2dw3_A Intrinsic membrane protein PUFX; quinone exchange, photosynthesis, light- harvesting, GXXXG motif, dimerization; NMR {Rhodobacter sphaeroides} PDB: 2ita_A
Probab=33.91 E-value=86 Score=19.53 Aligned_cols=32 Identities=6% Similarity=-0.124 Sum_probs=16.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhccCCCCCCCC
Q 018388 169 TTSAFQAATIVSMLAAAYMRVFLKDDVPNDDD 200 (357)
Q Consensus 169 ~~~~f~~~~~~~~~~~~~~~~~~~e~~~~~~~ 200 (357)
|-..+.+...+.++.+-.+-..+||..+..+.
T Consensus 32 ~AAv~f~~~~~~lv~l~~iG~~LPE~Sr~aP~ 63 (77)
T 2dw3_A 32 WAGGVFFGTLLLIGFFRVVGRMLPIQENQAPA 63 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCTTTTCSSCSS
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCchhcccCCC
Confidence 44444444444344444445678887655443
No 17
>1cmk_I CAMP-dependent protein kinase inhibitor, alpha form; phosphotransferase; HET: TPO SEP MYR; 2.90A {Homo sapiens}
Probab=26.08 E-value=17 Score=17.33 Aligned_cols=10 Identities=30% Similarity=0.591 Sum_probs=7.6
Q ss_pred hhhcCcchhh
Q 018388 75 SDQYGRKAML 84 (357)
Q Consensus 75 ~dr~Grk~~l 84 (357)
+||-|||..+
T Consensus 9 ~~RtGRRNAl 18 (26)
T 1cmk_I 9 SGRTGRRNAI 18 (26)
T ss_pred cCcccccccc
Confidence 5788888764
No 18
>2nrg_A Intrinsic membrane protein PUFX; BENT transmembrane helix, photosynthesis,membrane protein; NMR {Rhodobacter sphaeroides}
Probab=24.34 E-value=1.4e+02 Score=18.82 Aligned_cols=33 Identities=6% Similarity=-0.116 Sum_probs=17.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhccCCCCCCCC
Q 018388 168 STTSAFQAATIVSMLAAAYMRVFLKDDVPNDDD 200 (357)
Q Consensus 168 ~~~~~f~~~~~~~~~~~~~~~~~~~e~~~~~~~ 200 (357)
+|...+.+...+.++..-.+-..+||..+..+.
T Consensus 32 G~AAv~fl~~~~~lv~l~~iG~~LPE~Sr~aP~ 64 (82)
T 2nrg_A 32 GWAGGVFFGTLLLIGFFRVVGRMLPIQENQAPA 64 (82)
T ss_dssp HTHHHHHHHHHHHHHHHHHHHHSSTTTTTCCSS
T ss_pred cHHHHHHHHHHHHHHHHHHHHHhCchhcccCCC
Confidence 344445444444444444445678987655443
Done!