Your job contains 1 sequence.
>018389
MKMTITFLQRSTTTLRSLVVNSHFVSRVTSYCSRASNDFIEENERPTSSRSYSSRTNLSP
LLSSKGPHFGGYNVELVDDETWQVSAGLAHAWRGLDEDKEAKSDVNVVDDDDDATSFEGD
SDFDEIDNMRIRGDLFYKLDKDSKEFEEYSFDFHRRKSSKTKEGNKDSEKKEASKAKTDK
KECQKKEALKRKSDAKESKRKESPRPNLASRDDEFNKIVMSDDNVEKRVRTPTFNQLTAP
YHEPFCLDIYISKASVRACIVHRVTSKVVVVAHSISKDMKFDLDSTRNATACAAVGGILA
QRALADDIHDVVYTPRKGEKLEGKLQIVLQAIIDNGVNVKVKLKQRKQKKASYRPAS
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 018389
(357 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2077016 - symbol:AT3G22450 species:3702 "Arabi... 514 3.7e-72 2
TAIR|locus:1005716736 - symbol:AT1G08845 species:3702 "Ar... 248 3.9e-21 1
TAIR|locus:2087535 - symbol:AT3G20230 species:3702 "Arabi... 218 5.8e-18 1
TAIR|locus:2180310 - symbol:AT5G27820 species:3702 "Arabi... 134 1.8e-08 1
TIGR_CMR|GSU_2841 - symbol:GSU_2841 "ribosomal protein L1... 100 1.8e-07 2
TIGR_CMR|CBU_0254 - symbol:CBU_0254 "ribosomal protein L1... 106 2.1e-05 1
UNIPROTKB|Q9H0U6 - symbol:MRPL18 "39S ribosomal protein L... 116 3.7e-05 1
UNIPROTKB|J9P2G0 - symbol:MRPL18 "Uncharacterized protein... 117 4.6e-05 1
MGI|MGI:1914931 - symbol:Mrpl18 "mitochondrial ribosomal ... 115 5.3e-05 1
UNIPROTKB|F1SB64 - symbol:MRPL18 "Uncharacterized protein... 112 0.00013 1
RGD|1306387 - symbol:Mrpl18 "mitochondrial ribosomal prot... 112 0.00013 1
TIGR_CMR|BA_0126 - symbol:BA_0126 "ribosomal protein L18"... 98 0.00016 1
TIGR_CMR|CHY_2293 - symbol:CHY_2293 "ribosomal protein L1... 98 0.00016 1
UNIPROTKB|P0C018 - symbol:rplR "50S ribosomal subunit pro... 97 0.00021 1
UNIPROTKB|Q3ZBR7 - symbol:MRPL18 "39S ribosomal protein L... 109 0.00032 1
TIGR_CMR|CPS_0617 - symbol:CPS_0617 "ribosomal protein L1... 94 0.00044 1
TIGR_CMR|SO_0247 - symbol:SO_0247 "ribosomal protein L18"... 93 0.00056 1
>TAIR|locus:2077016 [details] [associations]
symbol:AT3G22450 species:3702 "Arabidopsis thaliana"
[GO:0003735 "structural constituent of ribosome" evidence=IEA]
[GO:0005622 "intracellular" evidence=IEA] [GO:0005739
"mitochondrion" evidence=ISM] [GO:0005840 "ribosome" evidence=IEA]
[GO:0006412 "translation" evidence=IEA] InterPro:IPR005484
Pfam:PF00861 EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0006412
GO:GO:0005840 GO:GO:0003735 EMBL:AB022215 EMBL:AP000731
EMBL:AY924773 EMBL:DQ132687 EMBL:DQ132688 IPI:IPI00534228
RefSeq:NP_188884.1 UniGene:At.64533 ProteinModelPortal:Q9LJA1
SMR:Q9LJA1 EnsemblPlants:AT3G22450.1 GeneID:821816
KEGG:ath:AT3G22450 TAIR:At3g22450 eggNOG:NOG314890
HOGENOM:HOG000005707 InParanoid:Q9LJA1 OMA:ACVIHRV PhylomeDB:Q9LJA1
ProtClustDB:CLSN2684329 Genevestigator:Q9LJA1 Uniprot:Q9LJA1
Length = 311
Score = 514 (186.0 bits), Expect = 3.7e-72, Sum P(2) = 3.7e-72
Identities = 103/160 (64%), Positives = 123/160 (76%)
Query: 184 QKKEALKRKSDAKESK----RKESPRPNLASRDDEFN-KIVMSDDNVEKRVRTPTFNQLT 238
Q K A K ++ +E+K K+ R R+D F + ++ V+KR RT TFNQLT
Sbjct: 132 QHKNAKKEQNQEEETKIKKDNKKEVRDEYKKRNDSFTGETDHPNEAVKKRERTFTFNQLT 191
Query: 239 APYHEPFCLDIYISKASVRACIVHRVTSKVVVVAHSISKDMKFDLDSTRNATACAAVGGI 298
AP+H PFCLDIYISK SVRAC++HRVTSKVV VAHSISKDMKFDL S RN ACAAVG +
Sbjct: 192 APFHYPFCLDIYISKESVRACVIHRVTSKVVTVAHSISKDMKFDLGSRRNVAACAAVGAV 251
Query: 299 LAQRALADDIHDVVYTPRKGEKLEGKLQIVLQAIIDNGVN 338
LAQR+L DDIHDV+YTPRKG+K+EGKLQ+VLQA+IDNGVN
Sbjct: 252 LAQRSLEDDIHDVIYTPRKGDKIEGKLQVVLQALIDNGVN 291
Score = 234 (87.4 bits), Expect = 3.7e-72, Sum P(2) = 3.7e-72
Identities = 48/97 (49%), Positives = 59/97 (60%)
Query: 71 GYNVELVDDETWQVSAGLAHAWRGLDEDKEAKSXXXXXXXXXXATSFEGDSDFDEIDNMR 130
G +E VDD+ W VS+ L+ AWR D AK+ + D D DEIDNMR
Sbjct: 46 GCGIETVDDDVWHVSSSLSQAWRQFQADT-AKNSPVTIQGVRETILDDEDPDHDEIDNMR 104
Query: 131 IRGDLFYKLDKDSKEFEEYSFDFHRRKSSKT--KEGN 165
IRGDLF+KLD+ SKEFEEY++DFHR+ K KE N
Sbjct: 105 IRGDLFFKLDRGSKEFEEYNYDFHRKNQHKNAKKEQN 141
>TAIR|locus:1005716736 [details] [associations]
symbol:AT1G08845 species:3702 "Arabidopsis thaliana"
[GO:0003735 "structural constituent of ribosome" evidence=IEA]
[GO:0005576 "extracellular region" evidence=ISM] [GO:0005622
"intracellular" evidence=IEA] [GO:0005840 "ribosome" evidence=IEA]
[GO:0006412 "translation" evidence=IEA] InterPro:IPR005484
Pfam:PF00861 EMBL:CP002684 GO:GO:0006412 GO:GO:0005840
GO:GO:0003735 IPI:IPI00938904 RefSeq:NP_001154322.1
UniGene:At.47036 ProteinModelPortal:F4HXR7 SMR:F4HXR7 PRIDE:F4HXR7
EnsemblPlants:AT1G08845.2 GeneID:837407 KEGG:ath:AT1G08845
OMA:SFFGVED Uniprot:F4HXR7
Length = 234
Score = 248 (92.4 bits), Expect = 3.9e-21, P = 3.9e-21
Identities = 52/117 (44%), Positives = 76/117 (64%)
Query: 226 EKRVRTP----TFNQLTAPYHEPFCLDIYISKASVRACIVHRVTSKVVVVAHSISKDMKF 281
EK+ + P +F Q T Y EPF LD++ISK V A + HRVT + V VA + SKD+K
Sbjct: 112 EKKSKNPDKHVSFKQRTVAYMEPFTLDVFISKRFVSASLTHRVTCRQVAVAGTNSKDVKA 171
Query: 282 DLDSTRNATACAAVGGILAQRALADDIHDVVYTPRKGEKLEGKLQIVLQAIIDNGVN 338
L S + AC ++G IL++RA D++ YTPR +K EGK++ V+Q++IDNG++
Sbjct: 172 VLRSRCDIPACMSIGRILSERAKEADVYTASYTPRDQDKFEGKIRAVVQSLIDNGID 228
>TAIR|locus:2087535 [details] [associations]
symbol:AT3G20230 species:3702 "Arabidopsis thaliana"
[GO:0003735 "structural constituent of ribosome" evidence=IEA;ISS]
[GO:0005622 "intracellular" evidence=IEA] [GO:0005840 "ribosome"
evidence=IEA;ISS] [GO:0006412 "translation" evidence=IEA;ISS]
[GO:0009507 "chloroplast" evidence=ISM] [GO:0006354 "DNA-dependent
transcription, elongation" evidence=RCA] InterPro:IPR005484
Pfam:PF00861 EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0006412
GO:GO:0005840 GO:GO:0003735 EMBL:AP000383 EMBL:AY086535
EMBL:BT000934 EMBL:AK317176 IPI:IPI00522889 RefSeq:NP_566655.1
UniGene:At.26916 UniGene:At.38271 ProteinModelPortal:Q9LJX6
SMR:Q9LJX6 STRING:Q9LJX6 PaxDb:Q9LJX6 PRIDE:Q9LJX6
EnsemblPlants:AT3G20230.1 GeneID:821567 KEGG:ath:AT3G20230
TAIR:At3g20230 eggNOG:NOG290803 HOGENOM:HOG000239373
InParanoid:Q9LJX6 OMA:TDMYMRP PhylomeDB:Q9LJX6
ProtClustDB:CLSN2688588 ArrayExpress:Q9LJX6 Genevestigator:Q9LJX6
Uniprot:Q9LJX6
Length = 187
Score = 218 (81.8 bits), Expect = 5.8e-18, P = 5.8e-18
Identities = 41/111 (36%), Positives = 73/111 (65%)
Query: 227 KRVRTPTFNQLTAPYHEPFCLDIYISKASVRACIVHRVTSKVVVVAHSISKDMKFDLDST 286
KR ++ Q T Y PF L+++ S+ + A ++HR TSKV+ VA + ++D++ ++ S
Sbjct: 73 KRPNRKSWKQRTDMYMRPFLLNVFFSRKFIHAKVMHRPTSKVISVATTNARDIRTNIPSL 132
Query: 287 RNATACAAVGGILAQRALADDIHDVVYTPRKGEKLEGKLQIVLQAIIDNGV 337
+ AC +G ++A+R++ D++ V Y PRKGE++EGKL IV+ I ++G+
Sbjct: 133 VDNEACRLIGKLIAERSMEADVYAVSYEPRKGERIEGKLGIVIDTIKEHGI 183
>TAIR|locus:2180310 [details] [associations]
symbol:AT5G27820 species:3702 "Arabidopsis thaliana"
[GO:0003735 "structural constituent of ribosome" evidence=IEA;ISS]
[GO:0005622 "intracellular" evidence=IEA] [GO:0005840 "ribosome"
evidence=IEA;ISS] [GO:0006412 "translation" evidence=IEA]
[GO:0009507 "chloroplast" evidence=ISM] [GO:0042254 "ribosome
biogenesis" evidence=ISS] [GO:0006354 "DNA-dependent transcription,
elongation" evidence=RCA] InterPro:IPR005484 Pfam:PF00861
EMBL:CP002688 GO:GO:0006412 GO:GO:0005840 GO:GO:0003735
EMBL:AY085957 EMBL:BT024558 IPI:IPI00535527 RefSeq:NP_198134.1
UniGene:At.30784 HSSP:P09415 ProteinModelPortal:Q8LDK5 SMR:Q8LDK5
STRING:Q8LDK5 PRIDE:Q8LDK5 EnsemblPlants:AT5G27820.1 GeneID:832844
KEGG:ath:AT5G27820 TAIR:At5g27820 HOGENOM:HOG000248743
InParanoid:Q8LDK5 OMA:KMHFTNK PhylomeDB:Q8LDK5
ProtClustDB:CLSN2687140 Genevestigator:Q8LDK5 Uniprot:Q8LDK5
Length = 114
Score = 134 (52.2 bits), Expect = 1.8e-08, P = 1.8e-08
Identities = 29/97 (29%), Positives = 53/97 (54%)
Query: 241 YHEPFCLDIYISKASVRACIVHRVTSKVVVVAHSISKDMKFDLDSTRNATACAAVGGILA 300
Y +P+ L ++ + V A ++H T+ V A S K ++ +D TR+ A + +G IL
Sbjct: 15 YLKPYVLKMHFTNKFVHAQVIHSPTATVACSASSQEKALRETMDITRDVAAASKIGKILG 74
Query: 301 QRALADDIHDVVYTPRKGEKLEGKLQIVLQAIIDNGV 337
+R L DI V +K ++ GK++ V+ ++ + GV
Sbjct: 75 ERLLMKDIPAVTIQMKKEQRYHGKVKAVIDSVREAGV 111
>TIGR_CMR|GSU_2841 [details] [associations]
symbol:GSU_2841 "ribosomal protein L18" species:243231
"Geobacter sulfurreducens PCA" [GO:0003735 "structural constituent
of ribosome" evidence=ISS] [GO:0006412 "translation" evidence=ISS]
[GO:0042254 "ribosome biogenesis" evidence=ISS] InterPro:IPR004389
InterPro:IPR005484 Pfam:PF00861 GO:GO:0006412 GO:GO:0005840
EMBL:AE017180 GenomeReviews:AE017180_GR GO:GO:0003735 GO:GO:0019843
eggNOG:COG0256 HOGENOM:HOG000248742 KO:K02881 OMA:GNKYHGR
TIGRFAMs:TIGR00060 ProtClustDB:PRK05593 HAMAP:MF_01337_B
RefSeq:NP_953884.2 ProteinModelPortal:Q749A3 SMR:Q749A3
GeneID:2686815 KEGG:gsu:GSU2841 PATRIC:22028529
BioCyc:GSUL243231:GH27-2807-MONOMER Uniprot:Q749A3
Length = 122
Score = 100 (40.3 bits), Expect = 1.8e-07, Sum P(2) = 1.8e-07
Identities = 25/91 (27%), Positives = 47/91 (51%)
Query: 247 LDIYISKASVRACIVHRVTSKVVVVAHSISKDMKFDLDSTRNATACAAVGGILAQRALAD 306
L+++ S + A I+ T +V A ++ K+ L+ N A VG ++A+RAL
Sbjct: 31 LNVFKSAQHIYAQIIDDTTGTTLVSASTVQKEASESLNHCGNVEAAKRVGALIAKRALEK 90
Query: 307 DIHDVVYTPRKGEKLEGKLQIVLQAIIDNGV 337
+I VV+ R G G+++ + + +NG+
Sbjct: 91 NIATVVFD-RNGFLYHGRIKALADSARENGL 120
Score = 44 (20.5 bits), Expect = 1.8e-07, Sum P(2) = 1.8e-07
Identities = 12/26 (46%), Positives = 16/26 (61%)
Query: 184 QKKEA-LKRKSDAKESKRKESPRPNL 208
QKK A LKRK+ ++ R + RP L
Sbjct: 6 QKKVAHLKRKTRVRKKIRGTTERPRL 31
>TIGR_CMR|CBU_0254 [details] [associations]
symbol:CBU_0254 "ribosomal protein L18" species:227377
"Coxiella burnetii RSA 493" [GO:0003735 "structural constituent of
ribosome" evidence=ISS] InterPro:IPR004389 InterPro:IPR005484
Pfam:PF00861 GO:GO:0006412 GO:GO:0005840 EMBL:AE016828
GenomeReviews:AE016828_GR GO:GO:0003735 GO:GO:0019843
eggNOG:COG0256 HOGENOM:HOG000248742 KO:K02881 OMA:GNKYHGR
TIGRFAMs:TIGR00060 ProtClustDB:PRK05593 HAMAP:MF_01337_B
RefSeq:NP_819298.1 ProteinModelPortal:Q83ER0 SMR:Q83ER0
GeneID:1208135 KEGG:cbu:CBU_0254 PATRIC:17929201
BioCyc:CBUR227377:GJ7S-260-MONOMER Uniprot:Q83ER0
Length = 117
Score = 106 (42.4 bits), Expect = 2.1e-05, P = 2.1e-05
Identities = 29/115 (25%), Positives = 56/115 (48%)
Query: 223 DNVEKRVRTPTFNQLTAPYHEPFCLDIYISKASVRACIVHRVTSKVVVVAHSISKDMKFD 282
D EKR+R + L ++ S + A ++ SKV+V A ++ K+++
Sbjct: 2 DKQEKRIRRARRTRAKIKELGAVRLCVHRSLNHIYAQLISPRDSKVLVCASTLEKEVRSQ 61
Query: 283 LDSTRNATACAAVGGILAQRALADDIHDVVYTPRKGEKLEGKLQIVLQAIIDNGV 337
+ N A A+G ++AQRA + V + R G K G+++ + +A+ + G+
Sbjct: 62 IKHGGNIQAATAIGKLIAQRAKKAGVTKVAFD-RSGYKYHGRVRALAEAVREGGI 115
>UNIPROTKB|Q9H0U6 [details] [associations]
symbol:MRPL18 "39S ribosomal protein L18, mitochondrial"
species:9606 "Homo sapiens" [GO:0003735 "structural constituent of
ribosome" evidence=NAS] [GO:0005761 "mitochondrial ribosome"
evidence=NAS] [GO:0006412 "translation" evidence=NAS] [GO:0008097
"5S rRNA binding" evidence=IDA] [GO:0035928 "rRNA import into
mitochondrion" evidence=IDA] [GO:0005739 "mitochondrion"
evidence=IDA] InterPro:IPR005484 Pfam:PF00861 GO:GO:0006412
GO:GO:0003735 GO:GO:0008097 GO:GO:0005761 EMBL:AL135914
EMBL:AL139045 GO:GO:0035928 CTD:29074 eggNOG:NOG326747
HOGENOM:HOG000043958 HOVERGEN:HBG001529 OMA:KERGWGT
OrthoDB:EOG46T32P EMBL:AL136633 EMBL:AF161556 EMBL:CR533491
EMBL:BC001623 IPI:IPI00160421 RefSeq:NP_054880.2 UniGene:Hs.416998
ProteinModelPortal:Q9H0U6 SMR:Q9H0U6 IntAct:Q9H0U6 STRING:Q9H0U6
PhosphoSite:Q9H0U6 DMDM:41017797 PaxDb:Q9H0U6 PRIDE:Q9H0U6
DNASU:29074 Ensembl:ENST00000367034 GeneID:29074 KEGG:hsa:29074
UCSC:uc003qsw.4 GeneCards:GC06P160210 HGNC:HGNC:14477 HPA:HPA028774
HPA:HPA028775 MIM:611831 neXtProt:NX_Q9H0U6 PharmGKB:PA30947
InParanoid:Q9H0U6 PhylomeDB:Q9H0U6 ChiTaRS:MRPL18 GenomeRNAi:29074
NextBio:52035 Bgee:Q9H0U6 CleanEx:HS_MRPL18 Genevestigator:Q9H0U6
GermOnline:ENSG00000112110 Uniprot:Q9H0U6
Length = 180
Score = 116 (45.9 bits), Expect = 3.7e-05, P = 3.7e-05
Identities = 30/82 (36%), Positives = 44/82 (53%)
Query: 256 VRACIVHRVTSKVVVVAHSISKDMKFDLDSTRNATACAAVGGILAQRALADDIHDVVYTP 315
V A + H+ KVVV A + +K L STRN AC ++G +LAQR L I+ +VY P
Sbjct: 90 VEALVEHQ-NGKVVVSASTREWAIKKHLYSTRNVVACESIGRVLAQRCLEAGINFMVYQP 148
Query: 316 RKGEKLEGKLQIVLQAIIDNGV 337
E ++ + A+ + GV
Sbjct: 149 TPWEAASDSMKRLQSAMTEGGV 170
>UNIPROTKB|J9P2G0 [details] [associations]
symbol:MRPL18 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0006412 "translation" evidence=IEA]
[GO:0005840 "ribosome" evidence=IEA] [GO:0003735 "structural
constituent of ribosome" evidence=IEA] InterPro:IPR005484
Pfam:PF00861 GO:GO:0006412 GO:GO:0005840 GO:GO:0003735 CTD:29074
GeneTree:ENSGT00390000006394 OMA:KERGWGT EMBL:AAEX03000318
RefSeq:XP_003432596.1 Ensembl:ENSCAFT00000046348 GeneID:476260
KEGG:cfa:476260 Uniprot:J9P2G0
Length = 194
Score = 117 (46.2 bits), Expect = 4.6e-05, P = 4.6e-05
Identities = 30/82 (36%), Positives = 44/82 (53%)
Query: 256 VRACIVHRVTSKVVVVAHSISKDMKFDLDSTRNATACAAVGGILAQRALADDIHDVVYTP 315
V A + HR KVVV A + +K L STRN AC ++G +LA+R L I+ +VY P
Sbjct: 104 VEALVEHR-NGKVVVSASTREWAIKKHLYSTRNVVACESIGRVLAERCLEAGINFMVYQP 162
Query: 316 RKGEKLEGKLQIVLQAIIDNGV 337
E ++ + A+ + GV
Sbjct: 163 TPWEAASDSMKRLQNAMTEGGV 184
>MGI|MGI:1914931 [details] [associations]
symbol:Mrpl18 "mitochondrial ribosomal protein L18"
species:10090 "Mus musculus" [GO:0003723 "RNA binding"
evidence=IEA] [GO:0005739 "mitochondrion" evidence=IDA] [GO:0005840
"ribosome" evidence=IEA] [GO:0006810 "transport" evidence=IEA]
[GO:0008097 "5S rRNA binding" evidence=ISO] [GO:0030529
"ribonucleoprotein complex" evidence=IEA] [GO:0035928 "rRNA import
into mitochondrion" evidence=ISO] MGI:MGI:1914931 GO:GO:0005739
GO:GO:0005840 GO:GO:0008097 GO:GO:0035928 CTD:29074
eggNOG:NOG326747 GeneTree:ENSGT00390000006394 HOGENOM:HOG000043958
HOVERGEN:HBG001529 OMA:KERGWGT OrthoDB:EOG46T32P EMBL:AK003104
EMBL:AK008680 EMBL:AK010150 EMBL:BC011425 IPI:IPI00387389
RefSeq:NP_080586.1 UniGene:Mm.290166 ProteinModelPortal:Q9CQL5
SMR:Q9CQL5 STRING:Q9CQL5 PhosphoSite:Q9CQL5 PaxDb:Q9CQL5
PRIDE:Q9CQL5 DNASU:67681 Ensembl:ENSMUST00000079121 GeneID:67681
KEGG:mmu:67681 UCSC:uc008alj.1 InParanoid:Q9CQL5 NextBio:325243
Bgee:Q9CQL5 CleanEx:MM_MRPL18 Genevestigator:Q9CQL5
GermOnline:ENSMUSG00000057388 Uniprot:Q9CQL5
Length = 180
Score = 115 (45.5 bits), Expect = 5.3e-05, P = 5.3e-05
Identities = 41/141 (29%), Positives = 68/141 (48%)
Query: 197 ESKRKESPRPNLASRDDEFNKIVMSDDNVEKRVRTPTFNQLTAPYHEPFCLDIYISKASV 256
ESK E+ P +R+ N ++ E+ T N+ +H L + ++ V
Sbjct: 37 ESKENEAVAPEFTNRNPR-NLELLGVARKERGWATVWPNREF--WHR---LRVVKTQHHV 90
Query: 257 RACIVHRVTSKVVVVAHSISKDMKFDLDSTRNATACAAVGGILAQRALADDIHDVVYTPR 316
A + H + +VVV A + +K L STRN AC ++G +LAQR L I+ +VY P
Sbjct: 91 EAFVEH-LNGQVVVSASTREWAIKKHLYSTRNVVACESIGRVLAQRCLEAGINFMVYQPT 149
Query: 317 KGEKLEGKLQIVLQAIIDNGV 337
E ++ + A+ ++GV
Sbjct: 150 PWEASSDSIKRLQNAMTESGV 170
>UNIPROTKB|F1SB64 [details] [associations]
symbol:MRPL18 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0035928 "rRNA import into mitochondrion" evidence=IEA]
[GO:0008097 "5S rRNA binding" evidence=IEA] [GO:0005739
"mitochondrion" evidence=IEA] [GO:0006412 "translation"
evidence=IEA] [GO:0005840 "ribosome" evidence=IEA] [GO:0003735
"structural constituent of ribosome" evidence=IEA]
InterPro:IPR005484 Pfam:PF00861 GO:GO:0005739 GO:GO:0006412
GO:GO:0005840 GO:GO:0003735 GO:GO:0008097 GO:GO:0035928 CTD:29074
GeneTree:ENSGT00390000006394 OMA:KERGWGT EMBL:CU855864
RefSeq:XP_001928391.1 UniGene:Ssc.8554 Ensembl:ENSSSCT00000004475
GeneID:100156324 KEGG:ssc:100156324 Uniprot:F1SB64
Length = 180
Score = 112 (44.5 bits), Expect = 0.00013, P = 0.00013
Identities = 29/82 (35%), Positives = 44/82 (53%)
Query: 256 VRACIVHRVTSKVVVVAHSISKDMKFDLDSTRNATACAAVGGILAQRALADDIHDVVYTP 315
+ A + HR +VVV A + +K L STRN AC +VG +LA+R L I+ +VY P
Sbjct: 90 IEALVEHR-NGQVVVSASTREWAIKKHLYSTRNVVACESVGRVLAERCLEAGINFMVYHP 148
Query: 316 RKGEKLEGKLQIVLQAIIDNGV 337
E ++ + A+ + GV
Sbjct: 149 TPWEAASDSIKRLQHAMTEGGV 170
>RGD|1306387 [details] [associations]
symbol:Mrpl18 "mitochondrial ribosomal protein L18"
species:10116 "Rattus norvegicus" [GO:0003735 "structural
constituent of ribosome" evidence=IEA] [GO:0005739 "mitochondrion"
evidence=IEA;ISO] [GO:0005840 "ribosome" evidence=IEA] [GO:0006412
"translation" evidence=IEA] [GO:0008097 "5S rRNA binding"
evidence=IEA;ISO] [GO:0035928 "rRNA import into mitochondrion"
evidence=IEA;ISO] InterPro:IPR005484 Pfam:PF00861 RGD:1306387
GO:GO:0005739 GO:GO:0006412 GO:GO:0005840 GO:GO:0003735
GO:GO:0008097 EMBL:CH474059 GO:GO:0035928 CTD:29074
eggNOG:NOG326747 GeneTree:ENSGT00390000006394 HOGENOM:HOG000043958
HOVERGEN:HBG001529 OMA:KERGWGT OrthoDB:EOG46T32P EMBL:BC167033
IPI:IPI00200432 RefSeq:NP_001099675.1 UniGene:Rn.4178 STRING:B2RZ57
Ensembl:ENSRNOT00000020064 GeneID:292244 KEGG:rno:292244
NextBio:633938 Genevestigator:B2RZ57 Uniprot:B2RZ57
Length = 180
Score = 112 (44.5 bits), Expect = 0.00013, P = 0.00013
Identities = 30/82 (36%), Positives = 45/82 (54%)
Query: 256 VRACIVHRVTSKVVVVAHSISKDMKFDLDSTRNATACAAVGGILAQRALADDIHDVVYTP 315
V A + H + +VVV A + +K L STRN AC +VG +LAQR L I+ +VY P
Sbjct: 90 VEAFVEH-LNGQVVVSASTREWAIKKHLYSTRNVVACESVGRVLAQRCLEAGINFMVYQP 148
Query: 316 RKGEKLEGKLQIVLQAIIDNGV 337
E ++ + A+ ++GV
Sbjct: 149 TPWEASSDSIKRLQNAMTESGV 170
>TIGR_CMR|BA_0126 [details] [associations]
symbol:BA_0126 "ribosomal protein L18" species:198094
"Bacillus anthracis str. Ames" [GO:0003735 "structural constituent
of ribosome" evidence=ISS] [GO:0006412 "translation" evidence=ISS]
InterPro:IPR004389 InterPro:IPR005484 Pfam:PF00861 EMBL:AE016879
EMBL:AE017334 EMBL:AE017225 GenomeReviews:AE016879_GR
GenomeReviews:AE017225_GR GenomeReviews:AE017334_GR GO:GO:0006412
GO:GO:0005840 GO:GO:0003735 GO:GO:0019843 eggNOG:COG0256
HOGENOM:HOG000248742 KO:K02881 OMA:GNKYHGR TIGRFAMs:TIGR00060
ProtClustDB:PRK05593 HAMAP:MF_01337_B RefSeq:NP_842694.1
RefSeq:YP_016731.1 RefSeq:YP_026412.1 ProteinModelPortal:Q81VR4
SMR:Q81VR4 DNASU:1087013 EnsemblBacteria:EBBACT00000013313
EnsemblBacteria:EBBACT00000016218 EnsemblBacteria:EBBACT00000019264
GeneID:1087013 GeneID:2818212 GeneID:2851571 KEGG:ban:BA_0126
KEGG:bar:GBAA_0126 KEGG:bat:BAS0126
BioCyc:BANT260799:GJAJ-137-MONOMER
BioCyc:BANT261594:GJ7F-139-MONOMER Uniprot:Q81VR4
Length = 120
Score = 98 (39.6 bits), Expect = 0.00016, P = 0.00016
Identities = 31/121 (25%), Positives = 59/121 (48%)
Query: 218 IVMSDDNVEKRVRTPTFN-QLTAPYHEPFCLDIYISKASVRACIVHRVTSKVVVVAHSIS 276
I +D N ++ R +LT P L+++ S + A ++ V +V A ++
Sbjct: 2 ITKADKNATRKKRHARVRAKLTGTAERPR-LNVFRSNQHIYAQVIDDVNGVTLVSASTLD 60
Query: 277 KDMKFDLDSTRNATACAAVGGILAQRALADDIHDVVYTPRKGEKLEGKLQIVLQAIIDNG 336
KD+ L+ T N A VG +A+RA+ + +VV+ R G G+++ + +A + G
Sbjct: 61 KDLA--LNGTSNIEAATKVGESVAKRAVEKGVKEVVFD-RGGYLYHGRVKALAEAAREAG 117
Query: 337 V 337
+
Sbjct: 118 L 118
>TIGR_CMR|CHY_2293 [details] [associations]
symbol:CHY_2293 "ribosomal protein L18" species:246194
"Carboxydothermus hydrogenoformans Z-2901" [GO:0003735 "structural
constituent of ribosome" evidence=ISS] [GO:0006412 "translation"
evidence=ISS] InterPro:IPR004389 InterPro:IPR005484 Pfam:PF00861
EMBL:CP000141 GenomeReviews:CP000141_GR GO:GO:0006412 GO:GO:0005840
GO:GO:0003735 GO:GO:0019843 eggNOG:COG0256 HOGENOM:HOG000248742
KO:K02881 OMA:GNKYHGR TIGRFAMs:TIGR00060 ProtClustDB:PRK05593
HAMAP:MF_01337_B RefSeq:YP_361102.1 ProteinModelPortal:Q3A9T2
SMR:Q3A9T2 STRING:Q3A9T2 GeneID:3727753 KEGG:chy:CHY_2293
PATRIC:21277657 BioCyc:CHYD246194:GJCN-2292-MONOMER Uniprot:Q3A9T2
Length = 122
Score = 98 (39.6 bits), Expect = 0.00016, P = 0.00016
Identities = 25/91 (27%), Positives = 49/91 (53%)
Query: 247 LDIYISKASVRACIVHRVTSKVVVVAHSISKDMKFDLDSTRNATACAAVGGILAQRALAD 306
L++Y S + A I+ V+ + +V A ++ +++ + N A AVG ++A+RA A
Sbjct: 31 LNVYRSLKHIYAQIIDDVSGRTLVAASTLDPELRGKIGYGGNIEAAKAVGRLIAERAKAK 90
Query: 307 DIHDVVYTPRKGEKLEGKLQIVLQAIIDNGV 337
I VV+ R G G+++ + +A + G+
Sbjct: 91 GIEKVVFD-RGGYLYHGRVKALAEAAREGGL 120
>UNIPROTKB|P0C018 [details] [associations]
symbol:rplR "50S ribosomal subunit protein L18"
species:83333 "Escherichia coli K-12" [GO:0006412 "translation"
evidence=IEA] [GO:0003735 "structural constituent of ribosome"
evidence=IEA] [GO:0030529 "ribonucleoprotein complex" evidence=IEA]
[GO:0019843 "rRNA binding" evidence=IEA] [GO:0005840 "ribosome"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR004389 InterPro:IPR005484 Pfam:PF00861 EMBL:X01563
EMBL:U00096 EMBL:AP009048 GenomeReviews:AP009048_GR
GenomeReviews:U00096_GR GO:GO:0006412 EMBL:U18997 GO:GO:0005840
GO:GO:0003735 GO:GO:0019843 PDB:2VHM PDBsum:2VHM PDB:2RDO
PDBsum:2RDO eggNOG:COG0256 HOGENOM:HOG000248742 KO:K02881
OMA:GNKYHGR TIGRFAMs:TIGR00060 PDB:3J0T PDB:3J0W PDB:3J0Y PDB:3J11
PDB:3J12 PDB:3J14 PDB:3SGF PDB:3UOS PDBsum:3J0T PDBsum:3J0W
PDBsum:3J0Y PDBsum:3J11 PDBsum:3J12 PDBsum:3J14 PDBsum:3SGF
PDBsum:3UOS PDB:1P85 PDB:1P86 PDB:1VS6 PDB:1VS8 PDB:1VT2 PDB:2AW4
PDB:2AWB PDB:2GYA PDB:2GYC PDB:2I2T PDB:2I2V PDB:2J28 PDB:2QAM
PDB:2QAO PDB:2QBA PDB:2QBC PDB:2QBE PDB:2QBG PDB:2QBI PDB:2QBK
PDB:2QOV PDB:2QOX PDB:2QOZ PDB:2QP1 PDB:2VHN PDB:2WWQ PDB:2Z4L
PDB:2Z4N PDB:3DF2 PDB:3DF4 PDB:3E1B PDB:3E1D PDB:3FIK PDB:3I1N
PDB:3I1P PDB:3I1R PDB:3I1T PDB:3I20 PDB:3I22 PDB:3IZT PDB:3IZU
PDB:3J01 PDB:3J19 PDB:3KCR PDB:3OAS PDB:3OAT PDB:3OFC PDB:3OFD
PDB:3OFQ PDB:3OFR PDB:3OFZ PDB:3OG0 PDB:3ORB PDB:3R8S PDB:3R8T
PDB:4GAR PDB:4GAU PDBsum:1P85 PDBsum:1P86 PDBsum:1VS6 PDBsum:1VS8
PDBsum:1VT2 PDBsum:2AW4 PDBsum:2AWB PDBsum:2GYA PDBsum:2GYC
PDBsum:2I2T PDBsum:2I2V PDBsum:2J28 PDBsum:2QAM PDBsum:2QAO
PDBsum:2QBA PDBsum:2QBC PDBsum:2QBE PDBsum:2QBG PDBsum:2QBI
PDBsum:2QBK PDBsum:2QOV PDBsum:2QOX PDBsum:2QOZ PDBsum:2QP1
PDBsum:2VHN PDBsum:2WWQ PDBsum:2Z4L PDBsum:2Z4N PDBsum:3DF2
PDBsum:3DF4 PDBsum:3E1B PDBsum:3E1D PDBsum:3FIK PDBsum:3I1N
PDBsum:3I1P PDBsum:3I1R PDBsum:3I1T PDBsum:3I20 PDBsum:3I22
PDBsum:3IZT PDBsum:3IZU PDBsum:3J01 PDBsum:3J19 PDBsum:3KCR
PDBsum:3OAS PDBsum:3OAT PDBsum:3OFC PDBsum:3OFD PDBsum:3OFQ
PDBsum:3OFR PDBsum:3OFZ PDBsum:3OG0 PDBsum:3ORB PDBsum:3R8S
PDBsum:3R8T PDBsum:4GAR PDBsum:4GAU PDB:3BBX PDBsum:3BBX
ProtClustDB:PRK05593 HAMAP:MF_01337_B PIR:A02803 RefSeq:NP_417763.1
RefSeq:YP_492128.1 ProteinModelPortal:P0C018 SMR:P0C018
DIP:DIP-47908N IntAct:P0C018 MINT:MINT-1293631 PaxDb:P0C018
PRIDE:P0C018 EnsemblBacteria:EBESCT00000004130
EnsemblBacteria:EBESCT00000018241 GeneID:12934402 GeneID:947804
KEGG:ecj:Y75_p3872 KEGG:eco:b3304 PATRIC:32122040 EchoBASE:EB0872
EcoGene:EG10879 BioCyc:EcoCyc:EG10879-MONOMER
BioCyc:ECOL316407:JW3266-MONOMER EvolutionaryTrace:P0C018
Genevestigator:P0C018 Uniprot:P0C018
Length = 117
Score = 97 (39.2 bits), Expect = 0.00021, P = 0.00021
Identities = 26/72 (36%), Positives = 40/72 (55%)
Query: 266 SKVVVVAHSISKDMKFDLDSTRNATACAAVGGILAQRALADDIHDVVYTPRKGEKLEGKL 325
S+V+V A ++ K + L T N A AAVG +A+RAL I DV + R G + G++
Sbjct: 45 SEVLVAASTVEKAIAEQLKYTGNKDAAAAVGKAVAERALEKGIKDVSFD-RSGFQYHGRV 103
Query: 326 QIVLQAIIDNGV 337
Q + A + G+
Sbjct: 104 QALADAAREAGL 115
>UNIPROTKB|Q3ZBR7 [details] [associations]
symbol:MRPL18 "39S ribosomal protein L18, mitochondrial"
species:9913 "Bos taurus" [GO:0008097 "5S rRNA binding"
evidence=ISS] [GO:0035928 "rRNA import into mitochondrion"
evidence=ISS] [GO:0005739 "mitochondrion" evidence=IEA] [GO:0005840
"ribosome" evidence=IEA] [GO:0006412 "translation" evidence=IEA]
[GO:0003735 "structural constituent of ribosome" evidence=IEA]
InterPro:IPR005484 Pfam:PF00861 GO:GO:0005739 GO:GO:0006412
GO:GO:0005840 GO:GO:0003735 GO:GO:0008097 GO:GO:0035928
EMBL:BC103149 IPI:IPI00692682 RefSeq:NP_001029780.1
UniGene:Bt.49496 ProteinModelPortal:Q3ZBR7 STRING:Q3ZBR7
Ensembl:ENSBTAT00000001699 GeneID:534352 KEGG:bta:534352 CTD:29074
eggNOG:NOG326747 GeneTree:ENSGT00390000006394 HOGENOM:HOG000043958
HOVERGEN:HBG001529 InParanoid:Q3ZBR7 OMA:KERGWGT OrthoDB:EOG46T32P
NextBio:20876370 Uniprot:Q3ZBR7
Length = 180
Score = 109 (43.4 bits), Expect = 0.00032, P = 0.00032
Identities = 30/91 (32%), Positives = 48/91 (52%)
Query: 247 LDIYISKASVRACIVHRVTSKVVVVAHSISKDMKFDLDSTRNATACAAVGGILAQRALAD 306
L + S+ + A + HR +VVV A + +K L ST++ AC +VG +LAQR L
Sbjct: 81 LRVIRSQHHIEALVEHR-NGQVVVSASTREWAIKKHLYSTKSVVACESVGRVLAQRCLEA 139
Query: 307 DIHDVVYTPRKGEKLEGKLQIVLQAIIDNGV 337
I+ +VY P E ++ + +I+ GV
Sbjct: 140 GINFMVYQPTPWEAASDSMKRLQIGMIEGGV 170
>TIGR_CMR|CPS_0617 [details] [associations]
symbol:CPS_0617 "ribosomal protein L18" species:167879
"Colwellia psychrerythraea 34H" [GO:0003735 "structural constituent
of ribosome" evidence=ISS] [GO:0006412 "translation" evidence=ISS]
InterPro:IPR004389 InterPro:IPR005484 Pfam:PF00861 GO:GO:0006412
GO:GO:0005840 EMBL:CP000083 GenomeReviews:CP000083_GR GO:GO:0003735
GO:GO:0019843 eggNOG:COG0256 HOGENOM:HOG000248742 KO:K02881
TIGRFAMs:TIGR00060 HAMAP:MF_01337_B RefSeq:YP_267367.1
ProteinModelPortal:Q488Z7 SMR:Q488Z7 STRING:Q488Z7 GeneID:3520558
KEGG:cps:CPS_0617 PATRIC:21464561 OMA:FRFHGRV
BioCyc:CPSY167879:GI48-704-MONOMER Uniprot:Q488Z7
Length = 117
Score = 94 (38.1 bits), Expect = 0.00044, P = 0.00044
Identities = 23/91 (25%), Positives = 48/91 (52%)
Query: 247 LDIYISKASVRACIVHRVTSKVVVVAHSISKDMKFDLDSTRNATACAAVGGILAQRALAD 306
L I+ + + A ++ S+V+ A ++ K++ ++ T N A AVG +A+RA+A
Sbjct: 26 LVIFRTPRHIYAQLIAPTGSEVIASASTLDKEVSAQIEKTGNVAAATAVGKAIAERAVAK 85
Query: 307 DIHDVVYTPRKGEKLEGKLQIVLQAIIDNGV 337
I + + R G G+++ + +A + G+
Sbjct: 86 GITKIAFD-RSGFLYHGRVKALAEAAREAGL 115
>TIGR_CMR|SO_0247 [details] [associations]
symbol:SO_0247 "ribosomal protein L18" species:211586
"Shewanella oneidensis MR-1" [GO:0003735 "structural constituent of
ribosome" evidence=ISS] [GO:0006412 "translation" evidence=ISS]
InterPro:IPR004389 InterPro:IPR005484 Pfam:PF00861 GO:GO:0006412
GO:GO:0005840 EMBL:AE014299 GenomeReviews:AE014299_GR GO:GO:0003735
GO:GO:0019843 eggNOG:COG0256 HOGENOM:HOG000248742 KO:K02881
TIGRFAMs:TIGR00060 ProtClustDB:PRK05593 HAMAP:MF_01337_B
RefSeq:NP_715887.1 ProteinModelPortal:Q8EK53 SMR:Q8EK53
GeneID:1168130 KEGG:son:SO_0247 PATRIC:23520187 OMA:GRQTRAK
Uniprot:Q8EK53
Length = 116
Score = 93 (37.8 bits), Expect = 0.00056, P = 0.00056
Identities = 23/72 (31%), Positives = 39/72 (54%)
Query: 266 SKVVVVAHSISKDMKFDLDSTRNATACAAVGGILAQRALADDIHDVVYTPRKGEKLEGKL 325
++VV A ++ K +K L ST N A AVG +A+RA+ + +V + R G K G++
Sbjct: 44 AQVVAAASTVEKAVKEQLKSTGNVDAAKAVGKFVAERAIEKGVTNVAFD-RSGFKYHGRV 102
Query: 326 QIVLQAIIDNGV 337
+ A + G+
Sbjct: 103 AALADAAREAGL 114
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.315 0.130 0.371 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 357 309 0.00079 116 3 11 22 0.42 34
33 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 17
No. of states in DFA: 601 (64 KB)
Total size of DFA: 210 KB (2117 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 25.27u 0.21s 25.48t Elapsed: 00:00:01
Total cpu time: 25.28u 0.21s 25.49t Elapsed: 00:00:01
Start: Sat May 11 11:16:28 2013 End: Sat May 11 11:16:29 2013