BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 018389
         (357 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1OVY|A Chain A, Solution Structure Of Ribosomal Protein L18 From Bacillus
           Stearothermophilus
          Length = 120

 Score = 42.0 bits (97), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 33/110 (30%), Positives = 52/110 (47%), Gaps = 8/110 (7%)

Query: 228 RVRTPTFNQLTAPYHEPFCLDIYISKASVRACIVHRVTSKVVVVAHSISKDMKFDLDSTR 287
           R+R   F     P      L ++ S   + A I+    S  +V A ++ K+  F LDST 
Sbjct: 17  RIRKKIFGTTERPR-----LSVFRSNKHIYAQIIDDTKSATIVSASTLDKE--FGLDSTN 69

Query: 288 NATACAAVGGILAQRALADDIHDVVYTPRKGEKLEGKLQIVLQAIIDNGV 337
           N  A   VG ++A+RAL   I  VV+  R G    G+++ +  A  + G+
Sbjct: 70  NIEAAKKVGELVAKRALEKGIKQVVF-DRGGYLYHGRVKALADAAREAGL 118


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.315    0.130    0.371 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,673,462
Number of Sequences: 62578
Number of extensions: 307164
Number of successful extensions: 539
Number of sequences better than 100.0: 4
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 535
Number of HSP's gapped (non-prelim): 4
length of query: 357
length of database: 14,973,337
effective HSP length: 100
effective length of query: 257
effective length of database: 8,715,537
effective search space: 2239893009
effective search space used: 2239893009
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 52 (24.6 bits)