BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 018389
(357 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9H0U6|RM18_HUMAN 39S ribosomal protein L18, mitochondrial OS=Homo sapiens GN=MRPL18
PE=1 SV=1
Length = 180
Score = 50.8 bits (120), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 31/94 (32%), Positives = 50/94 (53%), Gaps = 1/94 (1%)
Query: 247 LDIYISKASVRACIVHRVTSKVVVVAHSISKDMKFDLDSTRNATACAAVGGILAQRALAD 306
L + ++ V A + H+ KVVV A + +K L STRN AC ++G +LAQR L
Sbjct: 81 LRVIRTQHHVEALVEHQ-NGKVVVSASTREWAIKKHLYSTRNVVACESIGRVLAQRCLEA 139
Query: 307 DIHDVVYTPRKGEKLEGKLQIVLQAIIDNGVNVK 340
I+ +VY P E ++ + A+ + GV ++
Sbjct: 140 GINFMVYQPTPWEAASDSMKRLQSAMTEGGVVLR 173
>sp|Q9CQL5|RM18_MOUSE 39S ribosomal protein L18, mitochondrial OS=Mus musculus GN=Mrpl18
PE=2 SV=1
Length = 180
Score = 49.3 bits (116), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 44/81 (54%)
Query: 260 IVHRVTSKVVVVAHSISKDMKFDLDSTRNATACAAVGGILAQRALADDIHDVVYTPRKGE 319
V + +VVV A + +K L STRN AC ++G +LAQR L I+ +VY P E
Sbjct: 93 FVEHLNGQVVVSASTREWAIKKHLYSTRNVVACESIGRVLAQRCLEAGINFMVYQPTPWE 152
Query: 320 KLEGKLQIVLQAIIDNGVNVK 340
++ + A+ ++GV ++
Sbjct: 153 ASSDSIKRLQNAMTESGVMLR 173
>sp|Q3ZBR7|RM18_BOVIN 39S ribosomal protein L18, mitochondrial OS=Bos taurus GN=MRPL18
PE=2 SV=1
Length = 180
Score = 47.0 bits (110), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 30/91 (32%), Positives = 48/91 (52%), Gaps = 1/91 (1%)
Query: 247 LDIYISKASVRACIVHRVTSKVVVVAHSISKDMKFDLDSTRNATACAAVGGILAQRALAD 306
L + S+ + A + HR +VVV A + +K L ST++ AC +VG +LAQR L
Sbjct: 81 LRVIRSQHHIEALVEHR-NGQVVVSASTREWAIKKHLYSTKSVVACESVGRVLAQRCLEA 139
Query: 307 DIHDVVYTPRKGEKLEGKLQIVLQAIIDNGV 337
I+ +VY P E ++ + +I+ GV
Sbjct: 140 GINFMVYQPTPWEAASDSMKRLQIGMIEGGV 170
>sp|B7KI02|RL18_CYAP7 50S ribosomal protein L18 OS=Cyanothece sp. (strain PCC 7424)
GN=rplR PE=3 SV=1
Length = 120
Score = 47.0 bits (110), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/92 (31%), Positives = 49/92 (53%), Gaps = 1/92 (1%)
Query: 247 LDIYISKASVRACIVHRVTSKVVVVAHSISKDMKFDLDSTRNATACAAVGGILAQRALAD 306
L ++ S + A ++ V +V A ++ KD+K + S A AVG ++AQRALA
Sbjct: 29 LAVFRSNNHIYAQVIDDVAQHTLVAASTLDKDLKGEFSSGATCEASEAVGKLVAQRALAK 88
Query: 307 DIHDVVYTPRKGEKLEGKLQIVLQAIIDNGVN 338
I VV+ R G G+++ + QA + G++
Sbjct: 89 GIEKVVF-DRGGNLYHGRIRALAQAAREAGLD 119
>sp|A7HM36|RL18_FERNB 50S ribosomal protein L18 OS=Fervidobacterium nodosum (strain ATCC
35602 / DSM 5306 / Rt17-B1) GN=rplR PE=3 SV=1
Length = 122
Score = 47.0 bits (110), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 35/112 (31%), Positives = 55/112 (49%), Gaps = 6/112 (5%)
Query: 227 KRVRTPTFNQLTAPYHEPFCLDIYISKASVRACIVHRVTSKVVVVAHSISKDMKFDLDST 286
KR+R F P L ++ S+ + A I+ +V A ++ K MK L T
Sbjct: 16 KRLRKKIFGTPERPR-----LAVFRSEKHMYAQIIDDTKGITLVAASTVEKAMKEKLQKT 70
Query: 287 RNATACAAVGGILAQRALADDIHDVVYTPRKGEKLEGKLQIVLQAIIDNGVN 338
N TA VG ++A+RALA I +VV+ R G K G+++ + A + G+
Sbjct: 71 WNITAAKEVGKLIAERALAKGIKEVVF-DRGGFKYHGRVKALADAAREAGLK 121
>sp|Q3A6N1|RL18_PELCD 50S ribosomal protein L18 OS=Pelobacter carbinolicus (strain DSM
2380 / Gra Bd 1) GN=rplR PE=3 SV=1
Length = 122
Score = 46.2 bits (108), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 30/92 (32%), Positives = 53/92 (57%), Gaps = 1/92 (1%)
Query: 247 LDIYISKASVRACIVHRVTSKVVVVAHSISKDMKFDLDSTRNATACAAVGGILAQRALAD 306
L ++ S + A I+ VT K +V A +++ D+ L++T N A AVG +AQ+AL
Sbjct: 31 LCVFRSAKHIYAQIIEDVTGKTLVSASTVNSDVVEGLENTGNVEAAKAVGKAIAQKALGM 90
Query: 307 DIHDVVYTPRKGEKLEGKLQIVLQAIIDNGVN 338
DI +VV+ R G G+++ + +A + G++
Sbjct: 91 DIKNVVF-DRNGFLYHGRVKTLAEAAREAGLS 121
>sp|P73305|RL18_SYNY3 50S ribosomal protein L18 OS=Synechocystis sp. (strain PCC 6803 /
Kazusa) GN=rplR PE=3 SV=1
Length = 120
Score = 45.4 bits (106), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 50/92 (54%), Gaps = 1/92 (1%)
Query: 247 LDIYISKASVRACIVHRVTSKVVVVAHSISKDMKFDLDSTRNATACAAVGGILAQRALAD 306
L ++ S + A ++ V + A ++ D+K L ST A A VG ++AQRA+A
Sbjct: 29 LAVFRSNDHIYAQVIDDVAQHTLAAASTLDPDLKKSLSSTATQEASAEVGKLVAQRAIAK 88
Query: 307 DIHDVVYTPRKGEKLEGKLQIVLQAIIDNGVN 338
I+ VV+ R G+ G+++ + +A + G+N
Sbjct: 89 GINQVVF-DRGGKLYHGRVKALAEAAREAGLN 119
>sp|A3DJI8|RL18_CLOTH 50S ribosomal protein L18 OS=Clostridium thermocellum (strain ATCC
27405 / DSM 1237) GN=rplR PE=3 SV=1
Length = 122
Score = 45.1 bits (105), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/87 (33%), Positives = 44/87 (50%), Gaps = 5/87 (5%)
Query: 227 KRVRTPTFNQLTAPYHEPFCLDIYISKASVRACIVHRVTSKVVVVAHSISKDMKFDLDST 286
KRVR F P L++Y S ++ A ++ + +V A S+ K++K L
Sbjct: 16 KRVRKKVFGTPERPR-----LNVYRSLTNIYAQVIDDTVGRTLVSASSLEKEIKSKLGYC 70
Query: 287 RNATACAAVGGILAQRALADDIHDVVY 313
N A VG ++AQRALA+ I VV+
Sbjct: 71 GNKQAAREVGKLVAQRALANGIKRVVF 97
>sp|A5GVX5|RL18_SYNR3 50S ribosomal protein L18 OS=Synechococcus sp. (strain RCC307)
GN=rplR PE=3 SV=1
Length = 120
Score = 44.3 bits (103), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/91 (28%), Positives = 48/91 (52%), Gaps = 1/91 (1%)
Query: 247 LDIYISKASVRACIVHRVTSKVVVVAHSISKDMKFDLDSTRNATACAAVGGILAQRALAD 306
L +Y S + A ++ + A S+ KD++ L++ N A AVG ++A+RA+A
Sbjct: 29 LAVYRSNEHIYAQVIDDAAQHTLAAASSLDKDLRTSLNNGANCDASTAVGQLVAKRAIAK 88
Query: 307 DIHDVVYTPRKGEKLEGKLQIVLQAIIDNGV 337
I VV+ R G G+++ + +A + G+
Sbjct: 89 GIQQVVFD-RGGNLYHGRVKALAEAAREAGL 118
>sp|B0JHY8|RL18_MICAN 50S ribosomal protein L18 OS=Microcystis aeruginosa (strain
NIES-843) GN=rplR PE=3 SV=1
Length = 120
Score = 44.3 bits (103), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 48/92 (52%), Gaps = 1/92 (1%)
Query: 247 LDIYISKASVRACIVHRVTSKVVVVAHSISKDMKFDLDSTRNATACAAVGGILAQRALAD 306
L ++ S + A I+ V + A ++ ++ +L+ST A AAVG ++AQRAL
Sbjct: 29 LSVFRSNNHIYAQIIDDVAQHTLAAASTLEATLRGELESTATQEASAAVGKLVAQRALDK 88
Query: 307 DIHDVVYTPRKGEKLEGKLQIVLQAIIDNGVN 338
I VV+ R G G+++ + +A G+N
Sbjct: 89 GIEQVVF-DRGGNLYHGRVKALAEAARSAGLN 119
>sp|B7K233|RL18_CYAP8 50S ribosomal protein L18 OS=Cyanothece sp. (strain PCC 8801)
GN=rplR PE=3 SV=1
Length = 120
Score = 43.5 bits (101), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/97 (30%), Positives = 48/97 (49%), Gaps = 3/97 (3%)
Query: 244 PFC--LDIYISKASVRACIVHRVTSKVVVVAHSISKDMKFDLDSTRNATACAAVGGILAQ 301
P C L ++ S + A I+ V + A ++ D+K L S A AAVG ++A+
Sbjct: 24 PNCPRLAVFRSNLHIYAQIIDDVGQHTIAAASTVEPDLKKSLSSGSTCEASAAVGKLVAE 83
Query: 302 RALADDIHDVVYTPRKGEKLEGKLQIVLQAIIDNGVN 338
RALA I VV+ R G G+++ + A + G+
Sbjct: 84 RALAQGIEQVVFD-RGGNLYHGRVKALADAAREAGLQ 119
>sp|Q1LTC2|RL18_BAUCH 50S ribosomal protein L18 OS=Baumannia cicadellinicola subsp.
Homalodisca coagulata GN=rplR PE=3 SV=1
Length = 115
Score = 42.7 bits (99), Expect = 0.004, Method: Composition-based stats.
Identities = 28/83 (33%), Positives = 48/83 (57%), Gaps = 1/83 (1%)
Query: 256 VRACIVHRVTSKVVVVAHSISKDMKFDLDSTRNATACAAVGGILAQRALADDIHDVVYTP 315
+ A I+ SKV++ A ++ K + L +T N A AVG +A+RALA I++V +
Sbjct: 33 IYAQIIAPHNSKVLIAASTVEKMIANQLKNTGNKEAAVAVGKKIAERALAQGIYNVSFD- 91
Query: 316 RKGEKLEGKLQIVLQAIIDNGVN 338
R G + G++Q + +A + G+N
Sbjct: 92 RSGYQYHGRVQALAEAAREVGLN 114
>sp|A4IJK4|RL18_GEOTN 50S ribosomal protein L18 OS=Geobacillus thermodenitrificans
(strain NG80-2) GN=rplR PE=3 SV=1
Length = 120
Score = 42.4 bits (98), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 34/110 (30%), Positives = 53/110 (48%), Gaps = 8/110 (7%)
Query: 228 RVRTPTFNQLTAPYHEPFCLDIYISKASVRACIVHRVTSKVVVVAHSISKDMKFDLDSTR 287
R+R F P L ++ S + A I+ V S +V A ++ K+ F LDST
Sbjct: 17 RIRKKIFGTAERPR-----LSVFRSNKHIYAQIIDDVKSATIVSASTLDKE--FSLDSTN 69
Query: 288 NATACAAVGGILAQRALADDIHDVVYTPRKGEKLEGKLQIVLQAIIDNGV 337
N A VG ++A+RAL I VV+ R G G+++ + A + G+
Sbjct: 70 NIDAAKKVGELVAKRALEKGIKQVVF-DRGGYLYHGRVKALADAAREAGL 118
>sp|A9KJH8|RL18_CLOPH 50S ribosomal protein L18 OS=Clostridium phytofermentans (strain
ATCC 700394 / DSM 18823 / ISDg) GN=rplR PE=3 SV=1
Length = 122
Score = 42.4 bits (98), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 50/92 (54%), Gaps = 1/92 (1%)
Query: 247 LDIYISKASVRACIVHRVTSKVVVVAHSISKDMKFDLDSTRNATACAAVGGILAQRALAD 306
L ++ S + A I+ +V A ++ K +K +L+ T + A A +G ++A++AL
Sbjct: 31 LAVFRSNNHMYAQIIDDTVGNTLVSASTLEKGVKAELEKTNDVAAAAMLGTVIAKKALEK 90
Query: 307 DIHDVVYTPRKGEKLEGKLQIVLQAIIDNGVN 338
I VV+ R G +GK+Q + +A + G+N
Sbjct: 91 GITTVVF-DRGGFIYQGKVQALAEAAREAGLN 121
>sp|A6U875|RL18_SINMW 50S ribosomal protein L18 OS=Sinorhizobium medicae (strain WSM419)
GN=rplR PE=3 SV=1
Length = 120
Score = 42.4 bits (98), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 26/92 (28%), Positives = 49/92 (53%), Gaps = 1/92 (1%)
Query: 247 LDIYISKASVRACIVHRVTSKVVVVAHSISKDMKFDLDSTRNATACAAVGGILAQRALAD 306
L ++ S ++ A I+ V K + A ++ D++F L + + A AVG +LA+RA
Sbjct: 29 LSVHRSSKNIYAQIIDDVAGKTIASASTLDTDLRFSLKTGADTEAATAVGKLLAERASKA 88
Query: 307 DIHDVVYTPRKGEKLEGKLQIVLQAIIDNGVN 338
+ DVV+ R G+++ + +A + G+N
Sbjct: 89 GVKDVVF-DRGAFIYHGRIKALAEAAREGGLN 119
>sp|C4ZBT4|RL18_EUBR3 50S ribosomal protein L18 OS=Eubacterium rectale (strain ATCC 33656
/ VPI 0990) GN=rplR PE=3 SV=1
Length = 122
Score = 42.0 bits (97), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 30/104 (28%), Positives = 53/104 (50%), Gaps = 2/104 (1%)
Query: 235 NQLTAPYHEPFCLDIYISKASVRACIVHRVTSKVVVVAHSISKDMKFDLDSTRNATACAA 294
N L P L ++ S + A I+ +V A ++ KD+K +L+ T N A A
Sbjct: 20 NHLAGTAQRP-RLAVFRSNNHMYAQIIDDTVGNTLVSASTLDKDIKAELEKTNNVDAAAK 78
Query: 295 VGGILAQRALADDIHDVVYTPRKGEKLEGKLQIVLQAIIDNGVN 338
+G ++A++AL I VV+ R G GK++ + +A + G++
Sbjct: 79 LGTVIAKKALDKGISTVVF-DRGGFIYAGKVKALAEAAREAGLD 121
>sp|P09415|RL18_GEOSE 50S ribosomal protein L18 OS=Geobacillus stearothermophilus GN=rplR
PE=1 SV=1
Length = 120
Score = 41.2 bits (95), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 33/110 (30%), Positives = 52/110 (47%), Gaps = 8/110 (7%)
Query: 228 RVRTPTFNQLTAPYHEPFCLDIYISKASVRACIVHRVTSKVVVVAHSISKDMKFDLDSTR 287
R+R F P L ++ S + A I+ S +V A ++ K+ F LDST
Sbjct: 17 RIRKKIFGTTERPR-----LSVFRSNKHIYAQIIDDTKSATIVSASTLDKE--FGLDSTN 69
Query: 288 NATACAAVGGILAQRALADDIHDVVYTPRKGEKLEGKLQIVLQAIIDNGV 337
N A VG ++A+RAL I VV+ R G G+++ + A + G+
Sbjct: 70 NIEAAKKVGELVAKRALEKGIKQVVF-DRGGYLYHGRVKALADAAREAGL 118
>sp|C5D3T3|RL18_GEOSW 50S ribosomal protein L18 OS=Geobacillus sp. (strain WCH70) GN=rplR
PE=3 SV=1
Length = 120
Score = 41.2 bits (95), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 33/110 (30%), Positives = 55/110 (50%), Gaps = 8/110 (7%)
Query: 228 RVRTPTFNQLTAPYHEPFCLDIYISKASVRACIVHRVTSKVVVVAHSISKDMKFDLDSTR 287
RVR F P L+++ S + A I+ + + +V A ++ K+ FDL+ST
Sbjct: 17 RVRKKIFGTAERPR-----LNVFRSNKHIYAQIIDDMKAVTIVSASTLDKE--FDLESTG 69
Query: 288 NATACAAVGGILAQRALADDIHDVVYTPRKGEKLEGKLQIVLQAIIDNGV 337
N A VG ++A+RAL I VV+ R G G+++ + A + G+
Sbjct: 70 NIEAAKKVGELVAKRALEKGIKKVVF-DRGGYLYHGRVKALADAAREAGL 118
>sp|Q5L3S3|RL18_GEOKA 50S ribosomal protein L18 OS=Geobacillus kaustophilus (strain
HTA426) GN=rplR PE=3 SV=1
Length = 120
Score = 41.2 bits (95), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 33/110 (30%), Positives = 52/110 (47%), Gaps = 8/110 (7%)
Query: 228 RVRTPTFNQLTAPYHEPFCLDIYISKASVRACIVHRVTSKVVVVAHSISKDMKFDLDSTR 287
R+R F P L ++ S + A I+ S +V A ++ K+ F LDST
Sbjct: 17 RIRKKIFGTAERPR-----LSVFRSNKHIYAQIIDDTKSSTIVSASTLDKE--FGLDSTN 69
Query: 288 NATACAAVGGILAQRALADDIHDVVYTPRKGEKLEGKLQIVLQAIIDNGV 337
N A VG ++A+RAL I VV+ R G G+++ + A + G+
Sbjct: 70 NIEAAKKVGELVAKRALEKGIKKVVF-DRGGYLYHGRVKALADAAREAGL 118
>sp|Q0ANR6|RL18_MARMM 50S ribosomal protein L18 OS=Maricaulis maris (strain MCS10)
GN=rplR PE=3 SV=1
Length = 120
Score = 40.8 bits (94), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 25/92 (27%), Positives = 49/92 (53%), Gaps = 1/92 (1%)
Query: 247 LDIYISKASVRACIVHRVTSKVVVVAHSISKDMKFDLDSTRNATACAAVGGILAQRALAD 306
L +Y S ++ A I+ + K VV A S+ + + + + A VG ++A+RA+ +
Sbjct: 29 LSVYRSSKNIYAQIIDDASGKTVVAASSLEEAAQKEHGKGWDTKAAELVGKLIAERAVKE 88
Query: 307 DIHDVVYTPRKGEKLEGKLQIVLQAIIDNGVN 338
+ DVV+ R G G+++ + +A + G+N
Sbjct: 89 GVKDVVF-DRGGYIFHGRVKALAEAAREGGLN 119
>sp|B0BSU7|RL18_ACTPJ 50S ribosomal protein L18 OS=Actinobacillus pleuropneumoniae
serotype 3 (strain JL03) GN=rplR PE=3 SV=1
Length = 117
Score = 40.4 bits (93), Expect = 0.019, Method: Composition-based stats.
Identities = 25/72 (34%), Positives = 41/72 (56%), Gaps = 1/72 (1%)
Query: 266 SKVVVVAHSISKDMKFDLDSTRNATACAAVGGILAQRALADDIHDVVYTPRKGEKLEGKL 325
S+V+ A ++ K +K + T N A A VG ++A+RALA I V + R G K G++
Sbjct: 45 SEVLAAASTVEKVIKEQVKYTGNKDAAAVVGKLVAERALAKGIQAVAFD-RSGFKYHGRV 103
Query: 326 QIVLQAIIDNGV 337
Q++ A + G+
Sbjct: 104 QVLADAAREAGL 115
>sp|B3GZ27|RL18_ACTP7 50S ribosomal protein L18 OS=Actinobacillus pleuropneumoniae
serotype 7 (strain AP76) GN=rplR PE=3 SV=1
Length = 117
Score = 40.4 bits (93), Expect = 0.019, Method: Composition-based stats.
Identities = 25/72 (34%), Positives = 41/72 (56%), Gaps = 1/72 (1%)
Query: 266 SKVVVVAHSISKDMKFDLDSTRNATACAAVGGILAQRALADDIHDVVYTPRKGEKLEGKL 325
S+V+ A ++ K +K + T N A A VG ++A+RALA I V + R G K G++
Sbjct: 45 SEVLAAASTVEKVIKEQVKYTGNKDAAAVVGKLVAERALAKGIQAVAFD-RSGFKYHGRV 103
Query: 326 QIVLQAIIDNGV 337
Q++ A + G+
Sbjct: 104 QVLADAAREAGL 115
>sp|A3N373|RL18_ACTP2 50S ribosomal protein L18 OS=Actinobacillus pleuropneumoniae
serotype 5b (strain L20) GN=rplR PE=3 SV=1
Length = 117
Score = 40.4 bits (93), Expect = 0.019, Method: Composition-based stats.
Identities = 25/72 (34%), Positives = 41/72 (56%), Gaps = 1/72 (1%)
Query: 266 SKVVVVAHSISKDMKFDLDSTRNATACAAVGGILAQRALADDIHDVVYTPRKGEKLEGKL 325
S+V+ A ++ K +K + T N A A VG ++A+RALA I V + R G K G++
Sbjct: 45 SEVLAAASTVEKVIKEQVKYTGNKDAAAVVGKLVAERALAKGIQAVAFD-RSGFKYHGRV 103
Query: 326 QIVLQAIIDNGV 337
Q++ A + G+
Sbjct: 104 QVLADAAREAGL 115
>sp|B1XJJ2|RL18_SYNP2 50S ribosomal protein L18 OS=Synechococcus sp. (strain ATCC 27264 /
PCC 7002 / PR-6) GN=rplR PE=3 SV=1
Length = 120
Score = 40.4 bits (93), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 49/92 (53%), Gaps = 1/92 (1%)
Query: 247 LDIYISKASVRACIVHRVTSKVVVVAHSISKDMKFDLDSTRNATACAAVGGILAQRALAD 306
L ++ S + A ++ +V A ++ KD+K +L S N +A AVG ++A+RAL
Sbjct: 29 LAVFRSHKHIYAQVIDDEKQHTLVAASTLDKDLKGELASGGNISASTAVGNLIAKRALEK 88
Query: 307 DIHDVVYTPRKGEKLEGKLQIVLQAIIDNGVN 338
I VV+ R G G+++ + A + G++
Sbjct: 89 GITKVVF-DRGGNLYHGRVKALADAAREAGLD 119
>sp|B8E1E9|RL18_DICTD 50S ribosomal protein L18 OS=Dictyoglomus turgidum (strain Z-1310 /
DSM 6724) GN=rplR PE=3 SV=1
Length = 122
Score = 40.4 bits (93), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 42/80 (52%), Gaps = 1/80 (1%)
Query: 247 LDIYISKASVRACIVHRVTSKVVVVAHSISKDMKFDLDSTRNATACAAVGGILAQRALAD 306
L +Y S + A I+ +V A S+ K+++ L ST+N A VG ++A+RAL
Sbjct: 31 LAVYKSLRYIYAQIIDDTKGHTLVAASSLEKELRSQLKSTKNIEAAKLVGEVIAKRALEK 90
Query: 307 DIHDVVYTPRKGEKLEGKLQ 326
I VV+ R G GK++
Sbjct: 91 GIKRVVF-DRGGFLYHGKVK 109
>sp|Q2RQX6|RL18_RHORT 50S ribosomal protein L18 OS=Rhodospirillum rubrum (strain ATCC
11170 / NCIB 8255) GN=rplR PE=3 SV=1
Length = 120
Score = 40.4 bits (93), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 26/92 (28%), Positives = 49/92 (53%), Gaps = 1/92 (1%)
Query: 247 LDIYISKASVRACIVHRVTSKVVVVAHSISKDMKFDLDSTRNATACAAVGGILAQRALAD 306
L ++ S + A I+ + +V A ++ K+++ +L + A A VG +LA+RA A
Sbjct: 29 LSVFRSNKHMYAQIIDDAEGRTLVSASTVDKELRGNLTKGGDKAAAAEVGKLLAERAKAA 88
Query: 307 DIHDVVYTPRKGEKLEGKLQIVLQAIIDNGVN 338
+VV+ R G K G++Q + A + G++
Sbjct: 89 GYTEVVF-DRGGYKYHGRVQALADAAREAGLS 119
>sp|Q7VKE9|RL18_HAEDU 50S ribosomal protein L18 OS=Haemophilus ducreyi (strain 35000HP /
ATCC 700724) GN=rplR PE=3 SV=1
Length = 117
Score = 40.0 bits (92), Expect = 0.025, Method: Composition-based stats.
Identities = 25/72 (34%), Positives = 41/72 (56%), Gaps = 1/72 (1%)
Query: 266 SKVVVVAHSISKDMKFDLDSTRNATACAAVGGILAQRALADDIHDVVYTPRKGEKLEGKL 325
S+V+ A ++ K +K + T N A A VG ++A+RALA I V + R G K G++
Sbjct: 45 SEVLAAASTVEKVIKEQVQYTGNKDAAAIVGKLVAERALAKGIQVVAFD-RSGFKYHGRV 103
Query: 326 QIVLQAIIDNGV 337
Q++ A + G+
Sbjct: 104 QVLADAAREAGL 115
>sp|Q3A9T2|RL18_CARHZ 50S ribosomal protein L18 OS=Carboxydothermus hydrogenoformans
(strain Z-2901 / DSM 6008) GN=rplR PE=3 SV=1
Length = 122
Score = 40.0 bits (92), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 30/121 (24%), Positives = 60/121 (49%), Gaps = 1/121 (0%)
Query: 218 IVMSDDNVEKRVRTPTFNQLTAPYHEPFCLDIYISKASVRACIVHRVTSKVVVVAHSISK 277
I ++ N+E++ R + E L++Y S + A I+ V+ + +V A ++
Sbjct: 2 ITKTNRNLERKRRHLRVRKKIHGTPERPRLNVYRSLKHIYAQIIDDVSGRTLVAASTLDP 61
Query: 278 DMKFDLDSTRNATACAAVGGILAQRALADDIHDVVYTPRKGEKLEGKLQIVLQAIIDNGV 337
+++ + N A AVG ++A+RA A I VV+ R G G+++ + +A + G+
Sbjct: 62 ELRGKIGYGGNIEAAKAVGRLIAERAKAKGIEKVVFD-RGGYLYHGRVKALAEAAREGGL 120
Query: 338 N 338
Sbjct: 121 Q 121
>sp|A8F4S7|RL18_THELT 50S ribosomal protein L18 OS=Thermotoga lettingae (strain ATCC
BAA-301 / DSM 14385 / TMO) GN=rplR PE=3 SV=1
Length = 122
Score = 39.7 bits (91), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 29/111 (26%), Positives = 52/111 (46%), Gaps = 6/111 (5%)
Query: 228 RVRTPTFNQLTAPYHEPFCLDIYISKASVRACIVHRVTSKVVVVAHSISKDMKFDLDSTR 287
R+R F P L ++ S+ + A I+ +V A ++ D++ + T
Sbjct: 17 RIRKKVFGTSERPR-----LSVFRSEKHIYAQIIDDTKGHTLVSASTLDPDLRARIAKTY 71
Query: 288 NATACAAVGGILAQRALADDIHDVVYTPRKGEKLEGKLQIVLQAIIDNGVN 338
N A VG ++AQ+AL+ I VV+ R G K G+++ + A + G+
Sbjct: 72 NKEAAKEVGKLVAQKALSKGISQVVF-DRGGFKFHGRIRELADAAREAGLK 121
>sp|A6VLK4|RL18_ACTSZ 50S ribosomal protein L18 OS=Actinobacillus succinogenes (strain
ATCC 55618 / 130Z) GN=rplR PE=3 SV=1
Length = 117
Score = 39.3 bits (90), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 41/73 (56%), Gaps = 1/73 (1%)
Query: 266 SKVVVVAHSISKDMKFDLDSTRNATACAAVGGILAQRALADDIHDVVYTPRKGEKLEGKL 325
S+V+ A ++ K++ + T N A A VG ++A+RALA + DV + R G K G++
Sbjct: 45 SEVLAAASTVEKEISAQVKYTGNKDAAAVVGKLVAERALAKGVKDVAF-DRSGFKYHGRV 103
Query: 326 QIVLQAIIDNGVN 338
Q + A + G+
Sbjct: 104 QSLADAAREAGLQ 116
>sp|B3WAK2|RL18_LACCB 50S ribosomal protein L18 OS=Lactobacillus casei (strain BL23)
GN=rplR PE=3 SV=1
Length = 119
Score = 39.3 bits (90), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 29/92 (31%), Positives = 50/92 (54%), Gaps = 6/92 (6%)
Query: 247 LDIYISKASVRACIVHRVTSKVVVVAHSISKDMKFDLDSTRNATACAA-VGGILAQRALA 305
L+I+ S ++ A ++ V + A ++ KD+K N TA +A VG ++A+RA+A
Sbjct: 31 LNIFRSNKNIYAQLIDDVAGVTLASASTLDKDIK----DPENKTAASAQVGALIAKRAVA 86
Query: 306 DDIHDVVYTPRKGEKLEGKLQIVLQAIIDNGV 337
D H VV R G G++ + +A +NG+
Sbjct: 87 DG-HKVVVFDRGGYLYHGRVAALAEAARENGL 117
>sp|Q034Z9|RL18_LACC3 50S ribosomal protein L18 OS=Lactobacillus casei (strain ATCC 334)
GN=rplR PE=3 SV=1
Length = 119
Score = 39.3 bits (90), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 29/92 (31%), Positives = 50/92 (54%), Gaps = 6/92 (6%)
Query: 247 LDIYISKASVRACIVHRVTSKVVVVAHSISKDMKFDLDSTRNATACAA-VGGILAQRALA 305
L+I+ S ++ A ++ V + A ++ KD+K N TA +A VG ++A+RA+A
Sbjct: 31 LNIFRSNKNIYAQLIDDVAGVTLASASTLDKDIK----DPENKTAASAQVGALIAKRAVA 86
Query: 306 DDIHDVVYTPRKGEKLEGKLQIVLQAIIDNGV 337
D H VV R G G++ + +A +NG+
Sbjct: 87 DG-HKVVVFDRGGYLYHGRVAALAEAARENGL 117
>sp|Q92QF4|RL18_RHIME 50S ribosomal protein L18 OS=Rhizobium meliloti (strain 1021)
GN=rplR PE=3 SV=1
Length = 120
Score = 38.9 bits (89), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 26/92 (28%), Positives = 48/92 (52%), Gaps = 1/92 (1%)
Query: 247 LDIYISKASVRACIVHRVTSKVVVVAHSISKDMKFDLDSTRNATACAAVGGILAQRALAD 306
L ++ S ++ A I+ V K + A ++ D++ L + + A AVG +LA+RA
Sbjct: 29 LSVHRSSKNIYAQIIDDVAGKTIASASTLDTDLRSSLKTGADTEAATAVGKLLAERASKA 88
Query: 307 DIHDVVYTPRKGEKLEGKLQIVLQAIIDNGVN 338
I DVV+ R G+++ + +A + G+N
Sbjct: 89 GIKDVVF-DRGAFIYHGRIKALAEAAREGGLN 119
>sp|Q749A3|RL18_GEOSL 50S ribosomal protein L18 OS=Geobacter sulfurreducens (strain ATCC
51573 / DSM 12127 / PCA) GN=rplR PE=3 SV=1
Length = 122
Score = 38.9 bits (89), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 25/91 (27%), Positives = 47/91 (51%), Gaps = 1/91 (1%)
Query: 247 LDIYISKASVRACIVHRVTSKVVVVAHSISKDMKFDLDSTRNATACAAVGGILAQRALAD 306
L+++ S + A I+ T +V A ++ K+ L+ N A VG ++A+RAL
Sbjct: 31 LNVFKSAQHIYAQIIDDTTGTTLVSASTVQKEASESLNHCGNVEAAKRVGALIAKRALEK 90
Query: 307 DIHDVVYTPRKGEKLEGKLQIVLQAIIDNGV 337
+I VV+ R G G+++ + + +NG+
Sbjct: 91 NIATVVF-DRNGFLYHGRIKALADSARENGL 120
>sp|Q3BWW7|RL18_XANC5 50S ribosomal protein L18 OS=Xanthomonas campestris pv. vesicatoria
(strain 85-10) GN=rplR PE=3 SV=1
Length = 119
Score = 38.9 bits (89), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 42/72 (58%), Gaps = 1/72 (1%)
Query: 266 SKVVVVAHSISKDMKFDLDSTRNATACAAVGGILAQRALADDIHDVVYTPRKGEKLEGKL 325
SKV+ A+++ D+K L + +N+ A A VG ++A+RA A I V + R G + G++
Sbjct: 47 SKVIAAANTLQADVKDGLKNGKNSDAAAKVGKLIAERAKAAGIEKVAF-DRSGYRYHGRI 105
Query: 326 QIVLQAIIDNGV 337
+ + A + G+
Sbjct: 106 KALADAAREGGL 117
>sp|Q8PNR1|RL18_XANAC 50S ribosomal protein L18 OS=Xanthomonas axonopodis pv. citri
(strain 306) GN=rplR PE=3 SV=1
Length = 119
Score = 38.9 bits (89), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 42/72 (58%), Gaps = 1/72 (1%)
Query: 266 SKVVVVAHSISKDMKFDLDSTRNATACAAVGGILAQRALADDIHDVVYTPRKGEKLEGKL 325
SKV+ A+++ D+K L + +N+ A A VG ++A+RA A I V + R G + G++
Sbjct: 47 SKVIAAANTLQADVKDGLKNGKNSDAAAKVGKLIAERAKAAGIEKVAF-DRSGYRYHGRI 105
Query: 326 QIVLQAIIDNGV 337
+ + A + G+
Sbjct: 106 KALADAAREGGL 117
>sp|B5YDV9|RL18_DICT6 50S ribosomal protein L18 OS=Dictyoglomus thermophilum (strain ATCC
35947 / DSM 3960 / H-6-12) GN=rplR PE=3 SV=1
Length = 122
Score = 38.9 bits (89), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 42/80 (52%), Gaps = 1/80 (1%)
Query: 247 LDIYISKASVRACIVHRVTSKVVVVAHSISKDMKFDLDSTRNATACAAVGGILAQRALAD 306
L +Y S + A I+ +V A S+ K+++ L ST+N A VG ++A+RAL
Sbjct: 31 LAVYKSLRYIYAQIIDDTKGHTLVSASSLEKEIRSQLKSTKNIEAAKLVGEVIAKRALEK 90
Query: 307 DIHDVVYTPRKGEKLEGKLQ 326
I VV+ R G GK++
Sbjct: 91 GIKKVVF-DRGGFLYHGKVK 109
>sp|C6DG58|RL18_PECCP 50S ribosomal protein L18 OS=Pectobacterium carotovorum subsp.
carotovorum (strain PC1) GN=rplR PE=3 SV=1
Length = 117
Score = 38.5 bits (88), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 41/73 (56%), Gaps = 1/73 (1%)
Query: 266 SKVVVVAHSISKDMKFDLDSTRNATACAAVGGILAQRALADDIHDVVYTPRKGEKLEGKL 325
S+V+V A ++ K + L ST N A +A+G +A+RAL I DV + R G + G++
Sbjct: 45 SEVLVAASTVEKAIAEQLKSTGNKDAASAIGKAIAERALEKGIKDVSFD-RSGFQYHGRV 103
Query: 326 QIVLQAIIDNGVN 338
Q + A + G+
Sbjct: 104 QALADAAREAGLQ 116
>sp|A4SUX7|RL18_POLSQ 50S ribosomal protein L18 OS=Polynucleobacter necessarius subsp.
asymbioticus (strain DSM 18221 / CIP 109841 /
QLW-P1DMWA-1) GN=rplR PE=3 SV=1
Length = 117
Score = 38.5 bits (88), Expect = 0.073, Method: Composition-based stats.
Identities = 24/91 (26%), Positives = 49/91 (53%), Gaps = 1/91 (1%)
Query: 247 LDIYISKASVRACIVHRVTSKVVVVAHSISKDMKFDLDSTRNATACAAVGGILAQRALAD 306
L + S + A + +KVV A ++ KD++ + + NA A A +G ++A+RA+
Sbjct: 26 LTVIRSNTHISAQVYSPCGTKVVAAASTMEKDLRQAIKNGGNAQAAAQIGKLVAERAVKA 85
Query: 307 DIHDVVYTPRKGEKLEGKLQIVLQAIIDNGV 337
+ DV + R G + G+++ + +A + G+
Sbjct: 86 GVVDVAFD-RSGHRYHGRIKALAEAAREAGL 115
>sp|Q2RFR3|RL18_MOOTA 50S ribosomal protein L18 OS=Moorella thermoacetica (strain ATCC
39073) GN=rplR PE=3 SV=1
Length = 121
Score = 38.5 bits (88), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 48/92 (52%), Gaps = 2/92 (2%)
Query: 247 LDIYISKASVRACIVHRVTSKVVVVAHSISKDMKFDLDSTRNATACAAVGGILAQRALAD 306
L +Y S + A ++ +V A ++ +K L+ST N TA VG ++A++ALA
Sbjct: 31 LSVYRSLRHIYAQVIDDTRGVTLVAASTLDPALK-GLESTGNITAARKVGELIARKALAK 89
Query: 307 DIHDVVYTPRKGEKLEGKLQIVLQAIIDNGVN 338
I+ VV+ R G G++ V + + G+N
Sbjct: 90 GINKVVFD-RGGNIYHGRIAAVAEGAREAGLN 120
>sp|Q83ER0|RL18_COXBU 50S ribosomal protein L18 OS=Coxiella burnetii (strain RSA 493 /
Nine Mile phase I) GN=rplR PE=3 SV=1
Length = 117
Score = 38.1 bits (87), Expect = 0.097, Method: Composition-based stats.
Identities = 24/91 (26%), Positives = 49/91 (53%), Gaps = 1/91 (1%)
Query: 247 LDIYISKASVRACIVHRVTSKVVVVAHSISKDMKFDLDSTRNATACAAVGGILAQRALAD 306
L ++ S + A ++ SKV+V A ++ K+++ + N A A+G ++AQRA
Sbjct: 26 LCVHRSLNHIYAQLISPRDSKVLVCASTLEKEVRSQIKHGGNIQAATAIGKLIAQRAKKA 85
Query: 307 DIHDVVYTPRKGEKLEGKLQIVLQAIIDNGV 337
+ V + R G K G+++ + +A+ + G+
Sbjct: 86 GVTKVAFD-RSGYKYHGRVRALAEAVREGGI 115
>sp|A9NAY6|RL18_COXBR 50S ribosomal protein L18 OS=Coxiella burnetii (strain RSA 331 /
Henzerling II) GN=rplR PE=3 SV=1
Length = 117
Score = 38.1 bits (87), Expect = 0.097, Method: Composition-based stats.
Identities = 24/91 (26%), Positives = 49/91 (53%), Gaps = 1/91 (1%)
Query: 247 LDIYISKASVRACIVHRVTSKVVVVAHSISKDMKFDLDSTRNATACAAVGGILAQRALAD 306
L ++ S + A ++ SKV+V A ++ K+++ + N A A+G ++AQRA
Sbjct: 26 LCVHRSLNHIYAQLISPRDSKVLVCASTLEKEVRSQIKHGGNIQAATAIGKLIAQRAKKA 85
Query: 307 DIHDVVYTPRKGEKLEGKLQIVLQAIIDNGV 337
+ V + R G K G+++ + +A+ + G+
Sbjct: 86 GVTKVAFD-RSGYKYHGRVRALAEAVREGGI 115
>sp|A9KD15|RL18_COXBN 50S ribosomal protein L18 OS=Coxiella burnetii (strain Dugway
5J108-111) GN=rplR PE=3 SV=1
Length = 117
Score = 38.1 bits (87), Expect = 0.097, Method: Composition-based stats.
Identities = 24/91 (26%), Positives = 49/91 (53%), Gaps = 1/91 (1%)
Query: 247 LDIYISKASVRACIVHRVTSKVVVVAHSISKDMKFDLDSTRNATACAAVGGILAQRALAD 306
L ++ S + A ++ SKV+V A ++ K+++ + N A A+G ++AQRA
Sbjct: 26 LCVHRSLNHIYAQLISPRDSKVLVCASTLEKEVRSQIKHGGNIQAATAIGKLIAQRAKKA 85
Query: 307 DIHDVVYTPRKGEKLEGKLQIVLQAIIDNGV 337
+ V + R G K G+++ + +A+ + G+
Sbjct: 86 GVTKVAFD-RSGYKYHGRVRALAEAVREGGI 115
>sp|B6J247|RL18_COXB2 50S ribosomal protein L18 OS=Coxiella burnetii (strain CbuG_Q212)
GN=rplR PE=3 SV=1
Length = 117
Score = 38.1 bits (87), Expect = 0.097, Method: Composition-based stats.
Identities = 24/91 (26%), Positives = 49/91 (53%), Gaps = 1/91 (1%)
Query: 247 LDIYISKASVRACIVHRVTSKVVVVAHSISKDMKFDLDSTRNATACAAVGGILAQRALAD 306
L ++ S + A ++ SKV+V A ++ K+++ + N A A+G ++AQRA
Sbjct: 26 LCVHRSLNHIYAQLISPRDSKVLVCASTLEKEVRSQIKHGGNIQAATAIGKLIAQRAKKA 85
Query: 307 DIHDVVYTPRKGEKLEGKLQIVLQAIIDNGV 337
+ V + R G K G+++ + +A+ + G+
Sbjct: 86 GVTKVAFD-RSGYKYHGRVRALAEAVREGGI 115
>sp|B6J5E8|RL18_COXB1 50S ribosomal protein L18 OS=Coxiella burnetii (strain CbuK_Q154)
GN=rplR PE=3 SV=1
Length = 117
Score = 38.1 bits (87), Expect = 0.097, Method: Composition-based stats.
Identities = 24/91 (26%), Positives = 49/91 (53%), Gaps = 1/91 (1%)
Query: 247 LDIYISKASVRACIVHRVTSKVVVVAHSISKDMKFDLDSTRNATACAAVGGILAQRALAD 306
L ++ S + A ++ SKV+V A ++ K+++ + N A A+G ++AQRA
Sbjct: 26 LCVHRSLNHIYAQLISPRDSKVLVCASTLEKEVRSQIKHGGNIQAATAIGKLIAQRAKKA 85
Query: 307 DIHDVVYTPRKGEKLEGKLQIVLQAIIDNGV 337
+ V + R G K G+++ + +A+ + G+
Sbjct: 86 GVTKVAFD-RSGYKYHGRVRALAEAVREGGI 115
>sp|Q65QX1|RL18_MANSM 50S ribosomal protein L18 OS=Mannheimia succiniciproducens (strain
MBEL55E) GN=rplR PE=3 SV=1
Length = 117
Score = 38.1 bits (87), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 40/73 (54%), Gaps = 1/73 (1%)
Query: 266 SKVVVVAHSISKDMKFDLDSTRNATACAAVGGILAQRALADDIHDVVYTPRKGEKLEGKL 325
S+V+ A ++ K + + T N A A VG ++A+RALA I DV + R G K G++
Sbjct: 45 SEVLAAASTVEKAISEQVKYTGNKDAAAVVGKLVAERALAKGIKDVAF-DRSGFKYHGRV 103
Query: 326 QIVLQAIIDNGVN 338
Q + A + G+
Sbjct: 104 QSLADAAREAGLQ 116
>sp|O24704|RL18_SYNP6 50S ribosomal protein L18 OS=Synechococcus sp. (strain ATCC 27144 /
PCC 6301 / SAUG 1402/1) GN=rplR PE=3 SV=1
Length = 120
Score = 37.7 bits (86), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 25/91 (27%), Positives = 46/91 (50%), Gaps = 1/91 (1%)
Query: 247 LDIYISKASVRACIVHRVTSKVVVVAHSISKDMKFDLDSTRNATACAAVGGILAQRALAD 306
L ++ S + A ++ + A S+ D++ L S N A AAVG ++A+RA A
Sbjct: 29 LSVFRSNNHIYAQVIDDAAGHTLAAASSLDPDLRQSLTSGGNQQASAAVGKLIAERAQAK 88
Query: 307 DIHDVVYTPRKGEKLEGKLQIVLQAIIDNGV 337
+ VV+ R G G+++ + +A + G+
Sbjct: 89 GVTTVVFD-RGGNLYHGRVKALAEAAREAGL 118
>sp|Q31L22|RL18_SYNE7 50S ribosomal protein L18 OS=Synechococcus elongatus (strain PCC
7942) GN=rplR PE=3 SV=1
Length = 120
Score = 37.7 bits (86), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 25/91 (27%), Positives = 46/91 (50%), Gaps = 1/91 (1%)
Query: 247 LDIYISKASVRACIVHRVTSKVVVVAHSISKDMKFDLDSTRNATACAAVGGILAQRALAD 306
L ++ S + A ++ + A S+ D++ L S N A AAVG ++A+RA A
Sbjct: 29 LSVFRSNNHIYAQVIDDAAGHTLAAASSLDPDLRQSLTSGGNQQASAAVGKLIAERAQAK 88
Query: 307 DIHDVVYTPRKGEKLEGKLQIVLQAIIDNGV 337
+ VV+ R G G+++ + +A + G+
Sbjct: 89 GVTTVVFD-RGGNLYHGRVKALAEAAREAGL 118
>sp|B1LWR0|RL18_METRJ 50S ribosomal protein L18 OS=Methylobacterium radiotolerans (strain
ATCC 27329 / DSM 1819 / JCM 2831) GN=rplR PE=3 SV=1
Length = 120
Score = 37.4 bits (85), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 25/91 (27%), Positives = 47/91 (51%), Gaps = 1/91 (1%)
Query: 247 LDIYISKASVRACIVHRVTSKVVVVAHSISKDMKFDLDSTRNATACAAVGGILAQRALAD 306
L ++ S + ++ V K + A SI K +K +L + + A AVG ++A+RA A
Sbjct: 29 LSVFRSSKQIYVQVIDDVAGKTLASASSIDKALKGELKTGADVAAATAVGKLVAERAKAA 88
Query: 307 DIHDVVYTPRKGEKLEGKLQIVLQAIIDNGV 337
+ V++ R G G+++ V +A + G+
Sbjct: 89 GVTKVIF-DRSGYIYHGRVKAVAEAAREGGL 118
>sp|B8GV42|RL18_THISH 50S ribosomal protein L18 OS=Thioalkalivibrio sp. (strain HL-EbGR7)
GN=rplR PE=3 SV=1
Length = 117
Score = 37.0 bits (84), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 40/73 (54%), Gaps = 1/73 (1%)
Query: 266 SKVVVVAHSISKDMKFDLDSTRNATACAAVGGILAQRALADDIHDVVYTPRKGEKLEGKL 325
S+VV A ++ ++ DL T N A A+G ++A+RA A + +V + R G K G++
Sbjct: 45 SEVVAAASTVEVELAKDLKGTGNVDAAVAIGKVIAERAKAKGVSEVAFD-RSGFKYHGRV 103
Query: 326 QIVLQAIIDNGVN 338
+ + A + G+
Sbjct: 104 KALADAAREGGLQ 116
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.313 0.128 0.357
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 127,335,405
Number of Sequences: 539616
Number of extensions: 5530461
Number of successful extensions: 42805
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 587
Number of HSP's successfully gapped in prelim test: 1087
Number of HSP's that attempted gapping in prelim test: 29079
Number of HSP's gapped (non-prelim): 8668
length of query: 357
length of database: 191,569,459
effective HSP length: 119
effective length of query: 238
effective length of database: 127,355,155
effective search space: 30310526890
effective search space used: 30310526890
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 62 (28.5 bits)