Query 018389
Match_columns 357
No_of_seqs 160 out of 1032
Neff 3.1
Searched_HMMs 29240
Date Mon Mar 25 14:29:50 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018389.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/018389hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3r8s_O 50S ribosomal protein L 100.0 5.3E-36 1.8E-40 251.7 11.0 96 242-339 21-116 (116)
2 3bbo_Q Ribosomal protein L18; 100.0 4.6E-36 1.6E-40 265.0 5.4 102 236-339 58-161 (161)
3 3v2d_S 50S ribosomal protein L 100.0 1.9E-34 6.4E-39 241.8 9.0 90 243-339 23-112 (112)
4 1ovy_A 50S ribosomal protein L 100.0 1.3E-34 4.3E-39 245.0 7.0 100 236-339 21-120 (120)
5 2zjr_L 50S ribosomal protein L 100.0 8.9E-33 3E-37 232.2 2.7 90 242-339 25-114 (114)
6 1vq8_N 50S ribosomal protein L 100.0 6.7E-30 2.3E-34 230.1 11.9 96 245-342 33-133 (187)
7 3j21_O 50S ribosomal protein L 99.9 1.1E-28 3.7E-33 224.6 7.6 98 243-342 32-134 (203)
8 2zkr_n 60S ribosomal protein L 99.9 2.4E-23 8.4E-28 198.0 12.6 96 245-342 49-176 (297)
9 4a17_M RPL5, 60S ribosomal pro 99.8 3.5E-20 1.2E-24 176.8 10.0 94 245-339 49-173 (301)
10 3u5e_D 60S ribosomal protein L 99.8 5E-20 1.7E-24 175.5 10.8 95 243-339 48-173 (297)
11 3iz5_Q 60S ribosomal protein L 99.7 5.4E-17 1.9E-21 155.0 7.0 90 246-340 54-174 (304)
12 2vqe_K 30S ribosomal protein S 95.6 0.089 3E-06 44.9 10.0 88 245-340 17-106 (129)
13 3r8n_K 30S ribosomal protein S 94.9 0.1 3.4E-06 43.8 8.1 89 246-340 8-96 (117)
14 3j20_M 30S ribosomal protein S 94.1 0.43 1.5E-05 41.2 10.5 91 246-340 16-113 (137)
15 3bbn_K Ribosomal protein S11; 93.6 0.1 3.5E-06 45.3 5.7 88 245-340 30-119 (140)
16 2xzm_K RPS14E; ribosome, trans 93.4 0.25 8.4E-06 43.4 7.9 93 245-340 29-127 (151)
17 3u5c_O RP59A, 40S ribosomal pr 88.5 0.85 2.9E-05 39.4 6.2 91 246-339 16-112 (137)
18 2fvy_A D-galactose-binding per 54.0 40 0.0014 28.7 7.4 56 287-342 111-176 (309)
19 4fnq_A Alpha-galactosidase AGA 51.5 16 0.00054 38.1 5.2 45 299-344 351-413 (729)
20 3hcw_A Maltose operon transcri 50.9 35 0.0012 29.4 6.6 50 288-341 115-166 (295)
21 2wvv_A Alpha-L-fucosidase; alp 50.8 19 0.00066 35.5 5.5 49 297-345 81-147 (450)
22 3e61_A Putative transcriptiona 46.0 30 0.001 29.1 5.3 47 295-341 109-157 (277)
23 1hjs_A Beta-1,4-galactanase; 4 45.7 44 0.0015 31.2 6.8 44 300-343 33-80 (332)
24 1byk_A Protein (trehalose oper 44.1 45 0.0015 27.8 6.0 45 296-340 103-150 (255)
25 2w4l_A DCMP deaminse, deoxycyt 43.8 33 0.0011 29.9 5.3 40 299-341 110-151 (178)
26 1dbq_A Purine repressor; trans 42.5 30 0.001 29.2 4.7 45 296-340 114-160 (289)
27 2qu7_A Putative transcriptiona 42.5 33 0.0011 29.1 5.0 45 296-340 110-156 (288)
28 2h0a_A TTHA0807, transcription 42.4 38 0.0013 28.4 5.4 45 296-340 102-153 (276)
29 3clk_A Transcription regulator 41.5 39 0.0013 28.8 5.3 44 296-339 113-158 (290)
30 3cs3_A Sugar-binding transcrip 41.4 50 0.0017 27.9 6.0 45 296-340 106-152 (277)
31 2pr7_A Haloacid dehalogenase/e 41.3 39 0.0013 25.0 4.7 34 307-341 1-39 (137)
32 3kke_A LACI family transcripti 40.5 36 0.0012 29.5 5.0 45 296-340 119-165 (303)
33 3gv0_A Transcriptional regulat 40.2 65 0.0022 27.5 6.6 47 295-341 114-162 (288)
34 3g85_A Transcriptional regulat 40.0 35 0.0012 28.9 4.8 45 296-340 115-161 (289)
35 3gyb_A Transcriptional regulat 39.4 42 0.0015 28.2 5.2 48 295-343 105-153 (280)
36 2zxd_A Alpha-L-fucosidase, put 38.7 50 0.0017 32.8 6.3 48 297-344 108-173 (455)
37 3c3k_A Alanine racemase; struc 37.9 40 0.0014 28.7 4.9 45 296-340 112-158 (285)
38 3tev_A Glycosyl hyrolase, fami 37.7 27 0.00091 33.7 4.1 55 285-339 103-175 (351)
39 4h41_A Putative alpha-L-fucosi 37.3 39 0.0013 32.5 5.2 42 301-343 61-120 (340)
40 1c6v_A Protein (SIV integrase) 36.2 64 0.0022 24.9 5.4 70 256-343 23-92 (164)
41 3k4h_A Putative transcriptiona 36.1 46 0.0016 28.1 4.9 45 296-340 119-165 (292)
42 3fwz_A Inner membrane protein 36.0 69 0.0024 25.2 5.7 39 292-339 15-53 (140)
43 3bbl_A Regulatory protein of L 35.8 41 0.0014 28.7 4.6 48 288-339 109-158 (287)
44 2q28_A Oxalyl-COA decarboxylas 35.7 48 0.0017 32.4 5.6 43 294-342 9-51 (564)
45 3dbi_A Sugar-binding transcrip 35.3 48 0.0016 29.1 5.0 45 296-340 169-215 (338)
46 2c31_A Oxalyl-COA decarboxylas 35.3 49 0.0017 32.5 5.6 43 294-342 11-53 (568)
47 3tb6_A Arabinose metabolism tr 35.2 44 0.0015 28.1 4.6 45 296-340 125-170 (298)
48 3snr_A Extracellular ligand-bi 34.9 66 0.0022 27.7 5.8 46 295-340 122-167 (362)
49 2hc5_A ORF 99, hypothetical pr 34.6 46 0.0016 27.6 4.6 37 233-269 46-82 (117)
50 3eyp_A Putative alpha-L-fucosi 34.5 62 0.0021 32.2 6.2 48 297-344 57-125 (469)
51 3d8u_A PURR transcriptional re 34.2 55 0.0019 27.4 5.0 45 296-340 108-154 (275)
52 4do4_A Alpha-N-acetylgalactosa 34.1 80 0.0027 29.3 6.6 56 290-346 36-106 (400)
53 3o74_A Fructose transport syst 34.0 83 0.0028 26.1 6.1 47 295-341 107-155 (272)
54 3rot_A ABC sugar transporter, 34.0 78 0.0027 27.1 6.1 46 296-341 116-165 (297)
55 3ctp_A Periplasmic binding pro 33.5 58 0.002 28.6 5.3 45 296-340 160-206 (330)
56 3cc1_A BH1870 protein, putativ 33.5 74 0.0025 30.8 6.5 56 287-343 26-114 (433)
57 2nyt_A Probable C->U-editing e 33.1 58 0.002 29.0 5.2 42 300-341 98-144 (190)
58 1owl_A Photolyase, deoxyribodi 33.0 83 0.0028 30.9 6.8 48 295-342 80-127 (484)
59 3hs3_A Ribose operon repressor 32.9 61 0.0021 27.6 5.2 46 296-342 111-158 (277)
60 1y81_A Conserved hypothetical 32.7 49 0.0017 27.0 4.4 33 301-339 87-119 (138)
61 3g1w_A Sugar ABC transporter; 32.7 74 0.0025 27.1 5.7 48 296-343 113-163 (305)
62 2o20_A Catabolite control prot 32.7 55 0.0019 28.7 5.0 45 296-340 168-214 (332)
63 3ff4_A Uncharacterized protein 32.5 46 0.0016 27.1 4.2 34 300-339 75-108 (122)
64 1qpz_A PURA, protein (purine n 32.5 47 0.0016 29.3 4.6 49 288-340 161-211 (340)
65 2rgy_A Transcriptional regulat 32.3 47 0.0016 28.4 4.4 48 288-339 112-161 (290)
66 2d59_A Hypothetical protein PH 31.9 47 0.0016 27.1 4.2 34 300-339 94-127 (144)
67 2h6r_A Triosephosphate isomera 31.4 33 0.0011 30.1 3.3 49 296-344 71-119 (219)
68 3ues_A Alpha-1,3/4-fucosidase; 31.1 87 0.003 31.4 6.7 48 297-344 65-133 (478)
69 3h7a_A Short chain dehydrogena 30.7 73 0.0025 27.5 5.4 42 293-339 17-58 (252)
70 3qk7_A Transcriptional regulat 30.7 62 0.0021 27.8 4.9 45 296-340 114-160 (294)
71 3llv_A Exopolyphosphatase-rela 30.6 1.3E+02 0.0046 23.1 6.4 38 293-339 15-52 (141)
72 1p5d_X PMM, phosphomannomutase 30.3 1.3E+02 0.0046 29.0 7.7 52 286-341 26-81 (463)
73 3eya_A Pyruvate dehydrogenase 30.3 67 0.0023 31.4 5.6 43 294-342 4-47 (549)
74 3sbx_A Putative uncharacterize 30.3 54 0.0018 29.0 4.5 47 289-344 30-77 (189)
75 3brq_A HTH-type transcriptiona 30.2 63 0.0022 27.1 4.8 45 296-340 127-173 (296)
76 3gbv_A Putative LACI-family tr 30.2 66 0.0022 27.2 4.9 48 296-343 121-176 (304)
77 3egc_A Putative ribose operon 30.1 73 0.0025 27.0 5.2 45 296-340 113-159 (291)
78 3uw2_A Phosphoglucomutase/phos 30.0 1.4E+02 0.0049 29.4 8.0 53 285-341 39-95 (485)
79 3m0z_A Putative aldolase; MCSG 29.7 1.1E+02 0.0037 29.0 6.6 46 287-339 145-190 (249)
80 2rjo_A Twin-arginine transloca 29.7 96 0.0033 27.1 6.0 51 288-340 118-171 (332)
81 1fob_A Beta-1,4-galactanase; B 29.6 82 0.0028 29.2 5.9 44 300-343 33-80 (334)
82 3f4w_A Putative hexulose 6 pho 29.5 1.2E+02 0.0041 25.4 6.4 41 299-342 69-109 (211)
83 3huu_A Transcription regulator 29.5 64 0.0022 27.8 4.8 46 296-341 132-179 (305)
84 3lq1_A 2-succinyl-5-enolpyruvy 28.9 97 0.0033 30.6 6.5 47 290-342 8-55 (578)
85 3awd_A GOX2181, putative polyo 28.9 85 0.0029 26.4 5.4 41 292-337 22-62 (260)
86 3iar_A Adenosine deaminase; pu 28.7 1.2E+02 0.004 29.1 6.9 56 288-343 72-149 (367)
87 4evq_A Putative ABC transporte 28.6 94 0.0032 27.2 5.8 46 295-340 138-183 (375)
88 3miz_A Putative transcriptiona 28.6 57 0.0019 28.0 4.3 44 296-339 119-164 (301)
89 2fep_A Catabolite control prot 28.5 64 0.0022 27.6 4.6 45 296-340 121-168 (289)
90 3lyl_A 3-oxoacyl-(acyl-carrier 28.5 85 0.0029 26.4 5.3 42 293-339 15-56 (247)
91 4fn4_A Short chain dehydrogena 28.3 79 0.0027 28.5 5.4 44 291-339 15-58 (254)
92 3rkr_A Short chain oxidoreduct 28.1 1E+02 0.0034 26.5 5.8 44 292-340 38-81 (262)
93 3tfo_A Putative 3-oxoacyl-(acy 28.1 95 0.0032 27.3 5.7 44 292-340 13-56 (264)
94 1ovm_A Indole-3-pyruvate decar 27.7 88 0.003 30.4 5.9 43 294-342 6-49 (552)
95 3sju_A Keto reductase; short-c 27.6 77 0.0026 27.8 5.0 44 292-340 33-76 (279)
96 3ksm_A ABC-type sugar transpor 27.5 80 0.0027 26.2 4.9 53 288-340 107-162 (276)
97 1uas_A Alpha-galactosidase; TI 27.2 75 0.0026 29.7 5.2 57 287-344 23-95 (362)
98 1np7_A DNA photolyase; protein 27.2 74 0.0025 31.1 5.3 45 296-341 89-134 (489)
99 2h3h_A Sugar ABC transporter, 27.1 84 0.0029 27.1 5.1 51 288-340 105-157 (313)
100 3k9c_A Transcriptional regulat 26.9 1.2E+02 0.0039 26.0 5.9 46 296-341 114-160 (289)
101 3hut_A Putative branched-chain 26.6 90 0.0031 27.2 5.2 46 296-341 127-172 (358)
102 3sg0_A Extracellular ligand-bi 26.5 98 0.0034 27.0 5.5 45 295-339 146-190 (386)
103 3tjr_A Short chain dehydrogena 26.4 91 0.0031 27.7 5.4 45 291-340 39-83 (301)
104 3qy7_A Tyrosine-protein phosph 26.3 57 0.002 29.5 4.1 46 298-343 24-77 (262)
105 2duw_A Putative COA-binding pr 26.2 50 0.0017 27.1 3.4 33 301-339 88-120 (145)
106 3noy_A 4-hydroxy-3-methylbut-2 26.2 49 0.0017 32.7 3.8 55 287-342 68-139 (366)
107 3gza_A Putative alpha-L-fucosi 26.1 1.1E+02 0.0039 30.3 6.5 49 297-345 62-131 (443)
108 3qiv_A Short-chain dehydrogena 25.7 1.2E+02 0.0041 25.5 5.8 43 292-339 18-60 (253)
109 3osu_A 3-oxoacyl-[acyl-carrier 25.5 1.1E+02 0.0037 26.0 5.5 44 292-339 13-56 (246)
110 3uuw_A Putative oxidoreductase 25.5 81 0.0028 28.0 4.8 43 300-344 83-125 (308)
111 1gvf_A Tagatose-bisphosphate a 25.2 1.5E+02 0.0051 27.9 6.8 45 298-343 88-135 (286)
112 3ucx_A Short chain dehydrogena 25.0 1E+02 0.0036 26.5 5.4 42 293-339 21-62 (264)
113 4feg_A Pyruvate oxidase; carba 24.8 1E+02 0.0035 30.6 5.9 42 294-341 12-55 (603)
114 3qi7_A Putative transcriptiona 24.7 84 0.0029 30.7 5.1 47 296-342 144-194 (371)
115 2jah_A Clavulanic acid dehydro 24.5 1.1E+02 0.0038 26.1 5.4 41 292-337 16-56 (247)
116 1u3d_A Cryptochrome 1 apoprote 24.4 1.1E+02 0.0036 30.2 5.8 47 295-342 89-136 (509)
117 3m6y_A 4-hydroxy-2-oxoglutarat 24.4 1.1E+02 0.0038 29.2 5.7 45 288-339 169-213 (275)
118 2vbf_A Branched-chain alpha-ke 24.4 1.1E+02 0.0037 30.0 5.9 44 293-342 25-69 (570)
119 4da9_A Short-chain dehydrogena 24.4 1.1E+02 0.0039 26.7 5.5 44 292-339 38-81 (280)
120 2wvg_A PDC, pyruvate decarboxy 24.3 90 0.0031 30.6 5.3 43 294-342 4-47 (568)
121 2ae2_A Protein (tropinone redu 24.2 1.3E+02 0.0045 25.7 5.8 42 292-338 18-59 (260)
122 3d02_A Putative LACI-type tran 24.1 1.5E+02 0.0051 25.1 6.0 46 296-341 113-162 (303)
123 3o1i_D Periplasmic protein TOR 24.1 82 0.0028 26.6 4.4 47 295-341 118-171 (304)
124 3e3m_A Transcriptional regulat 24.0 1E+02 0.0034 27.4 5.1 45 296-340 175-222 (355)
125 2rhc_B Actinorhodin polyketide 23.7 1.1E+02 0.0039 26.6 5.4 41 292-337 31-71 (277)
126 3oa2_A WBPB; oxidoreductase, s 23.6 91 0.0031 28.4 4.9 41 287-335 108-149 (318)
127 2uz1_A Benzaldehyde lyase; thi 23.5 66 0.0023 31.5 4.2 42 294-341 5-46 (563)
128 3a5v_A Alpha-galactosidase; be 23.5 1.3E+02 0.0044 28.9 6.1 57 287-344 23-95 (397)
129 2hsg_A Glucose-resistance amyl 23.5 80 0.0027 27.6 4.3 45 296-340 165-212 (332)
130 2x7j_A 2-succinyl-5-enolpyruvy 23.4 88 0.003 31.1 5.1 45 292-342 30-75 (604)
131 3l49_A ABC sugar (ribose) tran 23.2 1.5E+02 0.0053 24.8 5.9 49 288-338 107-158 (291)
132 3rc1_A Sugar 3-ketoreductase; 23.1 1.2E+02 0.004 27.8 5.5 33 299-335 132-165 (350)
133 4ibo_A Gluconate dehydrogenase 23.1 1E+02 0.0035 27.0 4.9 43 292-339 35-77 (271)
134 3fy4_A 6-4 photolyase; DNA rep 22.9 87 0.003 31.6 5.0 45 296-341 92-137 (537)
135 3o9z_A Lipopolysaccaride biosy 22.8 95 0.0033 28.1 4.8 42 287-336 107-149 (312)
136 2hq1_A Glucose/ribitol dehydro 22.7 1.7E+02 0.0058 24.3 6.1 42 292-337 14-55 (247)
137 3afn_B Carbonyl reductase; alp 22.7 1.6E+02 0.0055 24.4 5.9 41 292-337 16-57 (258)
138 3is3_A 17BETA-hydroxysteroid d 22.5 1.3E+02 0.0045 26.0 5.5 45 291-339 26-70 (270)
139 4eyg_A Twin-arginine transloca 22.2 1.5E+02 0.005 25.8 5.8 47 295-341 126-172 (368)
140 4iin_A 3-ketoacyl-acyl carrier 22.0 1.7E+02 0.0058 25.2 6.1 43 293-339 39-81 (271)
141 3q94_A Fructose-bisphosphate a 21.9 1.4E+02 0.0048 28.1 5.9 44 299-343 95-141 (288)
142 3nkl_A UDP-D-quinovosamine 4-d 21.8 1.5E+02 0.0051 22.9 5.2 41 300-342 58-98 (141)
143 3hww_A 2-succinyl-5-enolpyruvy 21.8 1.2E+02 0.0041 29.7 5.7 43 293-341 8-51 (556)
144 4g81_D Putative hexonate dehyd 21.8 1.1E+02 0.0037 27.7 4.9 43 292-339 18-60 (255)
145 3ohs_X Trans-1,2-dihydrobenzen 21.7 1.3E+02 0.0045 27.0 5.5 33 300-335 110-142 (334)
146 3qlj_A Short chain dehydrogena 21.7 1.8E+02 0.0063 25.9 6.4 49 291-340 35-89 (322)
147 3jvd_A Transcriptional regulat 21.6 1.3E+02 0.0046 26.5 5.5 44 295-338 161-206 (333)
148 2g84_A Cytidine and deoxycytid 21.6 3.1E+02 0.011 24.0 7.8 40 300-341 118-165 (197)
149 3zyy_X Iron-sulfur cluster bin 21.5 2.1E+02 0.0073 29.8 7.6 65 241-309 203-286 (631)
150 3gaf_A 7-alpha-hydroxysteroid 21.4 1.1E+02 0.0037 26.4 4.7 42 293-339 22-63 (256)
151 3oqb_A Oxidoreductase; structu 21.4 1.1E+02 0.0038 28.0 5.0 35 298-335 125-159 (383)
152 3i1j_A Oxidoreductase, short c 21.4 1.2E+02 0.004 25.5 4.8 40 292-336 23-62 (247)
153 1ae1_A Tropinone reductase-I; 21.3 1.4E+02 0.0047 25.9 5.4 42 292-338 30-71 (273)
154 1zem_A Xylitol dehydrogenase; 21.2 1.2E+02 0.0042 25.9 5.0 41 292-337 16-56 (262)
155 2vbi_A Pyruvate decarboxylase; 21.1 94 0.0032 30.4 4.7 42 294-341 4-46 (566)
156 2zat_A Dehydrogenase/reductase 21.1 1.4E+02 0.0049 25.4 5.4 41 292-337 23-63 (260)
157 4acy_A Endo-alpha-mannosidase; 20.9 72 0.0025 31.0 3.8 43 300-343 109-153 (382)
158 4e3z_A Putative oxidoreductase 20.9 1.7E+02 0.006 25.1 5.9 46 291-340 34-79 (272)
159 1xg5_A ARPG836; short chain de 20.9 80 0.0027 27.3 3.7 41 291-336 40-80 (279)
160 2fqx_A Membrane lipoprotein TM 20.8 1.3E+02 0.0043 26.9 5.1 55 288-343 109-165 (318)
161 3ftp_A 3-oxoacyl-[acyl-carrier 20.8 1E+02 0.0035 27.0 4.5 41 292-337 37-77 (270)
162 2ews_A Pantothenate kinase; PA 20.7 2.2E+02 0.0077 26.4 7.0 46 294-341 223-270 (287)
163 1zh8_A Oxidoreductase; TM0312, 20.7 1.6E+02 0.0055 26.7 5.9 33 299-335 125-158 (340)
164 2isw_A Putative fructose-1,6-b 20.6 1.8E+02 0.0062 28.0 6.5 44 299-343 90-136 (323)
165 2iks_A DNA-binding transcripti 20.6 1.2E+02 0.004 25.9 4.7 44 296-339 126-171 (293)
166 4imr_A 3-oxoacyl-(acyl-carrier 20.6 1.2E+02 0.0042 26.6 4.9 41 292-337 42-82 (275)
167 3e82_A Putative oxidoreductase 20.6 1.2E+02 0.0041 27.9 5.1 35 298-335 109-143 (364)
168 2xn2_A Alpha-galactosidase; hy 20.5 1.3E+02 0.0044 31.5 5.8 45 299-344 355-417 (732)
169 3v2g_A 3-oxoacyl-[acyl-carrier 20.5 1.5E+02 0.0051 25.9 5.5 43 292-338 40-82 (271)
170 1ozh_A ALS, acetolactate synth 20.5 78 0.0027 31.2 4.0 43 294-342 12-54 (566)
171 2fn9_A Ribose ABC transporter, 20.5 1.2E+02 0.0042 25.5 4.7 53 288-340 107-166 (290)
172 1fmc_A 7 alpha-hydroxysteroid 20.5 1.5E+02 0.0051 24.7 5.2 41 291-336 19-59 (255)
173 3bil_A Probable LACI-family tr 20.4 1.5E+02 0.0051 26.4 5.5 47 288-338 168-216 (348)
174 1xq1_A Putative tropinone redu 20.4 1.5E+02 0.0052 25.1 5.4 43 291-338 22-64 (266)
175 3uug_A Multiple sugar-binding 20.4 1.5E+02 0.005 25.5 5.3 48 288-335 108-160 (330)
176 2yfo_A Alpha-galactosidase-suc 20.4 1E+02 0.0035 32.1 5.1 45 299-344 351-413 (720)
177 1rvg_A Fructose-1,6-bisphospha 20.4 2.1E+02 0.0072 27.3 6.8 44 299-343 87-133 (305)
178 4fb5_A Probable oxidoreductase 20.2 1.3E+02 0.0045 26.8 5.1 42 287-335 129-170 (393)
179 1geg_A Acetoin reductase; SDR 20.2 1.5E+02 0.0052 25.2 5.4 40 292-336 11-50 (256)
180 2vk8_A Pyruvate decarboxylase 20.1 82 0.0028 30.8 4.0 42 294-341 5-47 (563)
No 1
>3r8s_O 50S ribosomal protein L18; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 3fik_O 3j19_O 2wwq_O 3oat_O* 3oas_O* 3ofd_O 3ofc_O 3ofr_O* 3ofz_O* 3og0_O 3ofq_O 3r8t_O 3i1n_O 1p85_M 1p86_M 1vs8_O 1vs6_O 2aw4_O 2awb_O 1vt2_O ...
Probab=100.00 E-value=5.3e-36 Score=251.65 Aligned_cols=96 Identities=29% Similarity=0.391 Sum_probs=93.2
Q ss_pred CCCeEEEEEecCCeEEEEEEeCCCCeEEEEEcccchhhhcccCCCCCHHHHHHHHHHHHHHHHhCCCCEEEEcCCCCcch
Q 018389 242 HEPFCLDIYISKASVRACIVHRVTSKVVVVAHSISKDMKFDLDSTRNATACAAVGGILAQRALADDIHDVVYTPRKGEKL 321 (357)
Q Consensus 242 ~rPfRL~VfrSNKHIYAQVIDD~~GkTLaSAST~EkdIK~~L~St~NveAAa~VGkvLAeRakekGI~~VVFDpR~GykY 321 (357)
.+| ||+||+||+|||||||||.+|+|||||||+|++++..+.+++|++||..||++||+||+++||++|+|| |+||+|
T Consensus 21 ~rp-RL~V~rSnkhIyAQiidd~~g~tlasAST~e~~~~~~~~~~~n~~AA~~vG~llA~Ral~~GI~~vvfD-rgg~~y 98 (116)
T 3r8s_O 21 GAT-RLVVHRTPRHIYAQVIAPNGSEVLVAASTVEKAIAEQLKYTGNKDAAAAVGKAVAERALEKGIKDVSFD-RSGFQY 98 (116)
T ss_dssp TCC-EEEEEECSSCEEEEEECTTSSCEEEECCSSSHHHHTTCSCSSSHHHHHHHHHHHHHHHHTTTCCCCEEE-CTTSCS
T ss_pred CCC-EEEEEEeCCEEEEEEEEcCCCeEEEEEeeCchhhccccCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEe-cCCCcc
Confidence 455 999999999999999999999999999999999999999999999999999999999999999999999 999999
Q ss_pred hhHHHHHHHHHHHcCcEE
Q 018389 322 EGKLQIVLQAIIDNGVNV 339 (357)
Q Consensus 322 HGRVKAfADAaRE~GL~F 339 (357)
||||+||||+|||+||+|
T Consensus 99 hGrV~Ala~~are~Gl~f 116 (116)
T 3r8s_O 99 HGRVQALADAAREAGLQF 116 (116)
T ss_dssp SSHHHHHHHHHHHTTCCC
T ss_pred cHHHHHHHHHHHHhCCCC
Confidence 999999999999999987
No 2
>3bbo_Q Ribosomal protein L18; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea}
Probab=100.00 E-value=4.6e-36 Score=265.02 Aligned_cols=102 Identities=19% Similarity=0.358 Sum_probs=95.9
Q ss_pred cccCCCCCCeEEEEEecCCeEEEEEEeCCCCeEEEEEcccchhhhcccC--CCCCHHHHHHHHHHHHHHHHhCCCCEEEE
Q 018389 236 QLTAPYHEPFCLDIYISKASVRACIVHRVTSKVVVVAHSISKDMKFDLD--STRNATACAAVGGILAQRALADDIHDVVY 313 (357)
Q Consensus 236 qrTd~Y~rPfRL~VfrSNKHIYAQVIDD~~GkTLaSAST~EkdIK~~L~--St~NveAAa~VGkvLAeRakekGI~~VVF 313 (357)
...+...+| ||+||+||+|||||||||.+|+|||+|||+|++|+..++ +++|++||+.||++||+||+++||++|+|
T Consensus 58 ki~gt~~rP-RL~V~rSnkhIyAQvIdd~~g~tLasASTlek~lk~~l~~g~~~n~~AA~~VG~liAeRA~e~GI~~VvF 136 (161)
T 3bbo_Q 58 KVEGTPERP-RLCVFRSNKHLYVQVIDDSKMHTLASASTMQKSISEELDYSSSPTIEVAKKVGEVIASACLEKGITKVAF 136 (161)
T ss_dssp GGGGSSSCC-CCEEEECSSCEEEEEECCTTSCEEEEEEHHHHHHHHCCTTCCSSSHHHHHHHHHHSSSHHHHTSSCCCCC
T ss_pred hhccCCCCC-EEEEEecCCeEEEEEEECCCCEEEEEEeCCcHHHHhhccccCCCCHHHHHHHHHHHHHHHHHCCCCEEEE
Confidence 344445677 899999999999999999999999999999999998887 68999999999999999999999999999
Q ss_pred cCCCCcchhhHHHHHHHHHHHcCcEE
Q 018389 314 TPRKGEKLEGKLQIVLQAIIDNGVNV 339 (357)
Q Consensus 314 DpR~GykYHGRVKAfADAaRE~GL~F 339 (357)
| |+||+|||||+||||+|||+||+|
T Consensus 137 D-Rgg~~YhGRVkAladaaRe~GL~F 161 (161)
T 3bbo_Q 137 D-RGGYPYHGRVKALADAAREKGLQF 161 (161)
T ss_dssp C-CSSSCSSSTTHHHHHHHTTTTCCC
T ss_pred e-CCCCcchHHHHHHHHHHHHhCCcC
Confidence 9 999999999999999999999987
No 3
>3v2d_S 50S ribosomal protein L18; ribosome associated inhibitor A, RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome; 2.70A {Thermus thermophilus} PDB: 1vsp_M 2hgj_R 2hgq_R 2hgu_R 1vsa_M 2j03_S 2jl6_S 2jl8_S 2v47_S 2v49_S 2wdi_S 2wdj_S 2wdl_S 2wdn_S 2wh2_S 2wh4_S 2wrj_S 2wrl_S 2wro_S 2wrr_S ...
Probab=100.00 E-value=1.9e-34 Score=241.79 Aligned_cols=90 Identities=23% Similarity=0.346 Sum_probs=87.2
Q ss_pred CCeEEEEEecCCeEEEEEEeCCCCeEEEEEcccchhhhcccCCCCCHHHHHHHHHHHHHHHHhCCCCEEEEcCCCCcchh
Q 018389 243 EPFCLDIYISKASVRACIVHRVTSKVVVVAHSISKDMKFDLDSTRNATACAAVGGILAQRALADDIHDVVYTPRKGEKLE 322 (357)
Q Consensus 243 rPfRL~VfrSNKHIYAQVIDD~~GkTLaSAST~EkdIK~~L~St~NveAAa~VGkvLAeRakekGI~~VVFDpR~GykYH 322 (357)
+| ||+||+||+|||||||||.+|+||+||||+|++++ ++|++||..||++||+||+++||++|+|| |+||+||
T Consensus 23 rp-RL~V~rSnkhiyAQiidd~~~~tlasAsT~e~~~k-----~~n~~AA~~vG~llA~ra~~~GI~~vvfD-rgg~~yh 95 (112)
T 3v2d_S 23 RL-RLSVFRSLKHIYAQIIDDEKGVTLVSASSLALKLK-----GNKTEVARQVGRALAEKALALGIKQVAFD-RGPYKYH 95 (112)
T ss_dssp CC-EEEEEECSSCEEEEEEETTTTEEEEEEETTTTTCC-----CCHHHHHHHHHHHHHHHHHTTTCCBCEEE-CTTSCSC
T ss_pred CC-EEEEEEeCCeEEEEEEecCCCeEEEEEEecchhcc-----CCCHHHHHHHHHHHHHHHHHCCCCEEEEe-cCCCccc
Confidence 66 99999999999999999999999999999999985 68999999999999999999999999999 9999999
Q ss_pred hHHHHHHHHHHHcCcEE
Q 018389 323 GKLQIVLQAIIDNGVNV 339 (357)
Q Consensus 323 GRVKAfADAaRE~GL~F 339 (357)
|||+||||+|||+||+|
T Consensus 96 GrV~Ala~~are~GL~f 112 (112)
T 3v2d_S 96 GRVKALAEGAREGGLEF 112 (112)
T ss_dssp SSTTHHHHHHHHTTCBC
T ss_pred HHHHHHHHHHHHcCCCC
Confidence 99999999999999987
No 4
>1ovy_A 50S ribosomal protein L18; ribosome; NMR {Geobacillus stearothermophilus} SCOP: c.55.4.1
Probab=100.00 E-value=1.3e-34 Score=244.99 Aligned_cols=100 Identities=29% Similarity=0.483 Sum_probs=92.8
Q ss_pred cccCCCCCCeEEEEEecCCeEEEEEEeCCCCeEEEEEcccchhhhcccCCCCCHHHHHHHHHHHHHHHHhCCCCEEEEcC
Q 018389 236 QLTAPYHEPFCLDIYISKASVRACIVHRVTSKVVVVAHSISKDMKFDLDSTRNATACAAVGGILAQRALADDIHDVVYTP 315 (357)
Q Consensus 236 qrTd~Y~rPfRL~VfrSNKHIYAQVIDD~~GkTLaSAST~EkdIK~~L~St~NveAAa~VGkvLAeRakekGI~~VVFDp 315 (357)
...+...+| ||+||+||+|||||||||.+|+||+||||+|++++ +.+++|++||..||++||+||+++||++|+||
T Consensus 21 ki~gt~~rp-RL~V~rSnkhIyAQiidd~~~~tl~sAsT~e~~~~--~~~~~n~~AA~~vG~llA~Ral~~GI~~vvfD- 96 (120)
T 1ovy_A 21 KIFGTTERP-RLSVFRSNKHIYAQIIDDTKSATIVSASTLDKEFG--LDSTNNIEAAKKVGELVAKRALEKGIKQVVFD- 96 (120)
T ss_dssp ---CCSSCC-SEEEEEETTEEEEEEECCSSCCCEEEESTTSTTTC--SSCTTSHHHHHHHHHHHHHHHHHHSSSCCCCC-
T ss_pred HhcCCCCCC-EEEEEEeCCeEEEEEEEcCCCEEEEEEecCchhhC--cCCCCcHHHHHHHHHHHHHHHHHCCCCEEEEe-
Confidence 344456777 89999999999999999999999999999999998 67889999999999999999999999999999
Q ss_pred CCCcchhhHHHHHHHHHHHcCcEE
Q 018389 316 RKGEKLEGKLQIVLQAIIDNGVNV 339 (357)
Q Consensus 316 R~GykYHGRVKAfADAaRE~GL~F 339 (357)
|+||+|||||+||||+|||+||+|
T Consensus 97 rgg~~yhgrV~ala~~are~GL~f 120 (120)
T 1ovy_A 97 RGGYLYHGRVKALADAAREAGLEF 120 (120)
T ss_dssp STTCSSCSSTHHHHHHHHHHHCCC
T ss_pred cCCccccHHHHHHHHHHHHhCCcC
Confidence 999999999999999999999987
No 5
>2zjr_L 50S ribosomal protein L18; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: c.55.4.1 PDB: 1sm1_M* 2zjp_L* 2zjq_L 1nkw_M 3cf5_L* 3dll_L* 3pio_L* 3pip_L* 1nwy_M* 1nwx_M* 1xbp_M* 1pnu_M 1pny_M 1vor_P 1vou_P 1vow_P 1voy_P 1vp0_P
Probab=99.97 E-value=8.9e-33 Score=232.24 Aligned_cols=90 Identities=26% Similarity=0.376 Sum_probs=83.2
Q ss_pred CCCeEEEEEecCCeEEEEEEeCCCCeEEEEEcccchhhhcccCCCCCHHHHHHHHHHHHHHHHhCCCCEEEEcCCCCcch
Q 018389 242 HEPFCLDIYISKASVRACIVHRVTSKVVVVAHSISKDMKFDLDSTRNATACAAVGGILAQRALADDIHDVVYTPRKGEKL 321 (357)
Q Consensus 242 ~rPfRL~VfrSNKHIYAQVIDD~~GkTLaSAST~EkdIK~~L~St~NveAAa~VGkvLAeRakekGI~~VVFDpR~GykY 321 (357)
.+| ||+||+||+|||||||||.+|+||+||||+| | .+++|++||..||++||+||+++||++|+|| |+||+|
T Consensus 25 ~rp-RL~V~rSnkhIyAQiidd~~~~tl~sAST~e--l----~~~~n~~AA~~vG~llA~Ral~~GI~~vvfD-rgg~~y 96 (114)
T 2zjr_L 25 GRL-RLSVYRSSKHIYAQIIDDSRGQTLAAASSAA--L----KSGNKTDTAAAVGKALAAAAAEKGIKQVVFD-RGSYKY 96 (114)
T ss_dssp CSE-EECCCTTSSCCCCCEEETTTTEECCCCCSCS--C----CTTCSSSSHHHHHHHHHHHHHTTCCCCCEEC-CCSSCS
T ss_pred CCC-EEEEEEeCCeEEEEEEEcCCCEEEEEEEchH--h----cCCCCHHHHHHHHHHHHHHHHHCCCCEEEEe-cCCccc
Confidence 355 9999999999999999999999999999999 4 4678999999999999999999999999999 999999
Q ss_pred hhHHHHHHHHHHHcCcEE
Q 018389 322 EGKLQIVLQAIIDNGVNV 339 (357)
Q Consensus 322 HGRVKAfADAaRE~GL~F 339 (357)
||||+||||++||+||+|
T Consensus 97 hgrV~Ala~~are~GL~f 114 (114)
T 2zjr_L 97 HGRVKALADAAREGGLDF 114 (114)
T ss_dssp CSHHHHHHHHHHHHC---
T ss_pred cHHHHHHHHHHHHhCCcC
Confidence 999999999999999987
No 6
>1vq8_N 50S ribosomal protein L18P; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: c.55.4.1 PDB: 1vq4_N* 1vq5_N* 1vq6_N* 1vq7_N* 1s72_N* 1vq9_N* 1vqk_N* 1vql_N* 1vqm_N* 1vqn_N* 1vqo_N* 1vqp_N* 1yhq_N* 1yi2_N* 1yij_N* 1yit_N* 1yj9_N* 1yjn_N* 1yjw_N* 2otj_N* ...
Probab=99.96 E-value=6.7e-30 Score=230.09 Aligned_cols=96 Identities=20% Similarity=0.185 Sum_probs=91.4
Q ss_pred eEEEEEecCCeEEEEEE--eCCCCeEEEEEcccchhhhccc-CCCCCHHHHHHHHHHHHHHHHhCCCCEEEEcCCCCcch
Q 018389 245 FCLDIYISKASVRACIV--HRVTSKVVVVAHSISKDMKFDL-DSTRNATACAAVGGILAQRALADDIHDVVYTPRKGEKL 321 (357)
Q Consensus 245 fRL~VfrSNKHIYAQVI--DD~~GkTLaSAST~EkdIK~~L-~St~NveAAa~VGkvLAeRakekGI~~VVFDpR~GykY 321 (357)
+||+||+||+||||||| ||.+|+|||||||.|++ +..+ .+++|++||..||.+||+||+++||++|+|| |+|++|
T Consensus 33 pRL~V~rSnkhIyAQII~~dd~~~~tlasAsT~e~~-k~~~k~~~~N~~AA~~vG~llA~Ral~kGI~~vvfD-rgg~~y 110 (187)
T 1vq8_N 33 PRLVARKSNKHVRAQLVTLGPNGDDTLASAHSSDLA-EYGWEAPTGNMPSAYLTGLLAGLRAQEAGVEEAVLD-IGLNSP 110 (187)
T ss_dssp CEEEEEECSSCEEEEEEECCTTSCEEEEEEESGGGG-GGTCCSCSSSHHHHHHHHHHHHHHHHHTTCCBCEEE-CTTSCC
T ss_pred CEEEEEEeCCcEEEEEEEecCCCCEEEEEEEccchh-ccccccCCCcHHHHHHHHHHHHHHHHHCCCCEEEEc-CCCcee
Confidence 49999999999999999 99999999999999999 7667 6689999999999999999999999999999 999999
Q ss_pred h--hHHHHHHHHHHHcCcEEEEE
Q 018389 322 E--GKLQIVLQAIIDNGVNVKVK 342 (357)
Q Consensus 322 H--GRVKAfADAaRE~GL~FK~~ 342 (357)
| |||+|||++|||+||+|...
T Consensus 111 h~GgRV~Ala~gAre~GL~fph~ 133 (187)
T 1vq8_N 111 TPGSKVFAIQEGAIDAGLDIPHN 133 (187)
T ss_dssp CTTCHHHHHHHHHHHTTCBCCCC
T ss_pred ccchHHHHHHHHhhcCCEeccCC
Confidence 9 99999999999999998654
No 7
>3j21_O 50S ribosomal protein L18P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=99.95 E-value=1.1e-28 Score=224.60 Aligned_cols=98 Identities=19% Similarity=0.192 Sum_probs=90.5
Q ss_pred CCeEEEEEecCCeEEEEEEe--CCCCeEEEEEcccchhhhcc-cCCCCCHHHHHHHHHHHHHHHHhCCCCEEEEcCCCCc
Q 018389 243 EPFCLDIYISKASVRACIVH--RVTSKVVVVAHSISKDMKFD-LDSTRNATACAAVGGILAQRALADDIHDVVYTPRKGE 319 (357)
Q Consensus 243 rPfRL~VfrSNKHIYAQVID--D~~GkTLaSAST~EkdIK~~-L~St~NveAAa~VGkvLAeRakekGI~~VVFDpR~Gy 319 (357)
+| ||+||+||+|||||||| +.+|+|||||||.|+.++.. +.+++|++||..||.+||+||+++||++|+|| |+|+
T Consensus 32 kp-RL~V~rSnkhIyAQIId~d~~g~~tLasAST~El~lk~g~~~~~~N~~AA~~vG~llA~Ral~kGI~~vvfD-rgg~ 109 (203)
T 3j21_O 32 KP-RLVVRKSLNHHIAQIIVYDPKGDRTLVSAHTRELIRDFGWKGHCGNTPSAYLLGLLIGYKAKQAGIEEAILD-IGLH 109 (203)
T ss_dssp CC-EEEEEECSSCEEEEEEECCTTSCEEEEEECSTTTSSSSSCCSCTTSHHHHHHHHHHSSSSTTSSCCCCCEEE-CCSS
T ss_pred CC-EEEEEEeCCeEEEEEEEecCCCCeEEEEEEccchhhhhcccCCCCcHHHHHHHHHHHHHHHHhCCCCEEEEe-cCcc
Confidence 55 99999999999999998 78899999999999997543 46788999999999999999999999999999 9999
Q ss_pred ch--hhHHHHHHHHHHHcCcEEEEE
Q 018389 320 KL--EGKLQIVLQAIIDNGVNVKVK 342 (357)
Q Consensus 320 kY--HGRVKAfADAaRE~GL~FK~~ 342 (357)
+| ||||+|||++|||+||+|-..
T Consensus 110 ~y~~hgRV~Ala~gAre~GL~iPhs 134 (203)
T 3j21_O 110 PPVRGSSVFAVLKGAVDAGLNVPHS 134 (203)
T ss_dssp CCCTTSHHHHHHHHHHHHTCCCCCC
T ss_pred eeccCcchhhhhhhcccCCeecccC
Confidence 99 799999999999999988654
No 8
>2zkr_n 60S ribosomal protein L5; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris}
Probab=99.89 E-value=2.4e-23 Score=198.03 Aligned_cols=96 Identities=15% Similarity=0.182 Sum_probs=88.9
Q ss_pred eEEEEEecCCeEEEEEEeCC--CCeEEEEEcccchhhhcccC-CCCCHHHHHHHHHHHHHHHHhC---------------
Q 018389 245 FCLDIYISKASVRACIVHRV--TSKVVVVAHSISKDMKFDLD-STRNATACAAVGGILAQRALAD--------------- 306 (357)
Q Consensus 245 fRL~VfrSNKHIYAQVIDD~--~GkTLaSAST~EkdIK~~L~-St~NveAAa~VGkvLAeRakek--------------- 306 (357)
|||+|++||+|||||||++. .++|||||||.|.. +..+. +++|.+||..||.+||+||+++
T Consensus 49 pRLvVrrSNk~I~aQII~~~~~gd~tLasAsS~El~-kyg~k~g~tN~aAAy~tGlLlArRal~k~~ld~~y~G~~e~~g 127 (297)
T 2zkr_n 49 YRMIVRVTNRDIICQIAYARIEGDMIVCARYAHELP-KYGVKVGLTNYAAAYCTGLLLARRLLNRFGMDKIYEGQVEVTG 127 (297)
T ss_dssp EEEEEEEETTEEEEEEEECCSSSCEEEEEEEGGGGG-GTCCCSCSSSHHHHHHHHHHHHHHHHCCCSCCCCCSSCCSSSS
T ss_pred ceEEEEEecCcEEEEEEeccCCCCEEEEEeecCccc-ccccccCCCcHHHHHHHHHHHHHHHHHhhccchhhcCcccccc
Confidence 49999999999999999988 99999999999998 64444 5789999999999999999999
Q ss_pred ------------CCCEEEEcCCCCcch--hhHHHHHHHHHHHcCcEEEEE
Q 018389 307 ------------DIHDVVYTPRKGEKL--EGKLQIVLQAIIDNGVNVKVK 342 (357)
Q Consensus 307 ------------GI~~VVFDpR~GykY--HGRVKAfADAaRE~GL~FK~~ 342 (357)
||..|+|| |||++| ||||.|+|++||++||.|=..
T Consensus 128 ~~~~ve~~~~~~gi~~vvfD-rGl~ryttggRVfa~akGArDgGL~~Phs 176 (297)
T 2zkr_n 128 DEYNVESIDGQPGAFTCYLD-AGLARTTTGNKVFGALKGAVDGGLSIPHS 176 (297)
T ss_dssp CCCCCSSSCSSSCCCBEEEE-CTTSCCCTTCHHHHHHHHHHHTTCBCCCC
T ss_pred ccccccccccCCCceEEEEe-cCCcccCCCchHHHHHHHHHhcCcccCCC
Confidence 99999999 999999 999999999999999988543
No 9
>4a17_M RPL5, 60S ribosomal protein L5; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_M 4a1c_M 4a1e_M
Probab=99.81 E-value=3.5e-20 Score=176.77 Aligned_cols=94 Identities=20% Similarity=0.164 Sum_probs=85.6
Q ss_pred eEEEEEecCCeEEEEEEeC--CCCeEEEEEcccchhhhcccCCCCCHHHHHHHHHHHHHHHHhC--------CCC-----
Q 018389 245 FCLDIYISKASVRACIVHR--VTSKVVVVAHSISKDMKFDLDSTRNATACAAVGGILAQRALAD--------DIH----- 309 (357)
Q Consensus 245 fRL~VfrSNKHIYAQVIDD--~~GkTLaSAST~EkdIK~~L~St~NveAAa~VGkvLAeRakek--------GI~----- 309 (357)
+||+|++||+|||||||++ ..|+|||||||.|++.......++|++||..||.+||+||+++ ||+
T Consensus 49 pRLvV~rSNrhIyAQIIdd~~~Gd~tLaSASS~El~~~g~k~~~~N~~AAy~vG~LiAeRAl~k~~~d~~y~G~~e~~g~ 128 (301)
T 4a17_M 49 YRLVARATNTRIIAQIVYATLKCDRVLCAADSYELKRFGVSTGLASYAAAYATGLLLARRLLKQIGLDTVYAGQTKVDGA 128 (301)
T ss_dssp EEEEEEECSSCEEEEEEEECSSCEEEEEEEETTHHHHTTCCSCTTSHHHHHHHHHHHHHHHHHHHTCTTTCCCCSSCCCS
T ss_pred ceEEEEEcCCeEEEEEeecCCCCCEEEEEEeeccchhccccCCCCcHHHHHHHHHHHHHHHHHhcCCcccccCccccccc
Confidence 4999999999999999998 5669999999999985443346789999999999999999999 999
Q ss_pred --------------EEEEcCCCCcch--hhHHHHHHHHHHHcCcEE
Q 018389 310 --------------DVVYTPRKGEKL--EGKLQIVLQAIIDNGVNV 339 (357)
Q Consensus 310 --------------~VVFDpR~GykY--HGRVKAfADAaRE~GL~F 339 (357)
.+++| +|+.++ +|||-|++.+|+++||.+
T Consensus 129 ~~~ve~~~~~~~~f~~~LD-~Gl~rtt~G~RVfaalKGA~DgGL~I 173 (301)
T 4a17_M 129 YFNVDEDQKEKKPFKAILD-AGLVRTTTGNRVFGVLKGACDGGINI 173 (301)
T ss_dssp CCCGGGTCCSSCCCBCEEE-CTTSCCCSSCHHHHHHHHHHHTTCBC
T ss_pred eeecccccCCCCceEEEEe-cCCcccCcccchhhhhhcccccCccc
Confidence 69999 899999 999999999999999975
No 10
>3u5e_D 60S ribosomal protein L5; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 3u5i_D 4b6a_D 3izc_Q 3izs_Q 3o58_E 3o5h_E 3jyw_E 1s1i_E
Probab=99.81 E-value=5e-20 Score=175.46 Aligned_cols=95 Identities=18% Similarity=0.140 Sum_probs=86.2
Q ss_pred CCeEEEEEecCCeEEEEEEeC--CCCeEEEEEcccchhhhcccCCCCCHHHHHHHHHHHHHHHHhC--------CCCE--
Q 018389 243 EPFCLDIYISKASVRACIVHR--VTSKVVVVAHSISKDMKFDLDSTRNATACAAVGGILAQRALAD--------DIHD-- 310 (357)
Q Consensus 243 rPfRL~VfrSNKHIYAQVIDD--~~GkTLaSAST~EkdIK~~L~St~NveAAa~VGkvLAeRakek--------GI~~-- 310 (357)
+| ||+|++||+|||||||++ ..++|||||||.|.+.......++|++||..||.+||+||+++ ||++
T Consensus 48 kp-RLvV~rSNrhIyAQIIdd~~~Gd~tLaSASS~El~k~g~k~~~~N~~AAy~vG~LiAeRAl~k~~ld~~y~G~~e~~ 126 (297)
T 3u5e_D 48 KY-RLVVRFTNKDIICQIISSTITGDVVLAAAYSHELPRYGITHGLTNWAAAYATGLLIARRTLQKLGLDETYKGVEEVE 126 (297)
T ss_dssp CC-EEEEEEETTEEEEEEEECCTTCCEEEEEEEGGGGGGGTCCSCTTSHHHHHHHHHHHHHHHHHHTSTTSSCCCCSSCC
T ss_pred Cc-eEEEEEcCCeEEEEEeecCCCCCEEEEEEeecchhhcccCCCCCcHHHHHHHHHHHHHHHHHhhCCcccccCccccc
Confidence 55 999999999999999999 6789999999999985432236789999999999999999999 9998
Q ss_pred -----------------EEEcCCCCcch--hhHHHHHHHHHHHcCcEE
Q 018389 311 -----------------VVYTPRKGEKL--EGKLQIVLQAIIDNGVNV 339 (357)
Q Consensus 311 -----------------VVFDpR~GykY--HGRVKAfADAaRE~GL~F 339 (357)
+++| +|+.++ +|||-|++.+|+++||.+
T Consensus 127 g~~~~ve~~~~~~~~f~~~LD-vGl~rtttG~RVfaalKGA~DgGL~I 173 (297)
T 3u5e_D 127 GEYELTEAVEDGPRPFKVFLD-IGLQRTTTGARVFGALKGASDGGLYV 173 (297)
T ss_dssp CCCCCCCCCSSSCCCCBCEEE-CTTCCCCTTCSHHHHHHHHHHHTCBC
T ss_pred cceeccccccCCCCceeEEEe-cCCCccCccceehhhhhcccccCccc
Confidence 8999 899999 999999999999999975
No 11
>3iz5_Q 60S ribosomal protein L5 (L18P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_Q
Probab=99.66 E-value=5.4e-17 Score=155.01 Aligned_cols=90 Identities=19% Similarity=0.152 Sum_probs=81.4
Q ss_pred EEEEEecCCeEEEEEEeC--CCCeEEEEEcccchhhhcccC-CCCCHHHHHHHHHHHHHHHHhC--------CCCE----
Q 018389 246 CLDIYISKASVRACIVHR--VTSKVVVVAHSISKDMKFDLD-STRNATACAAVGGILAQRALAD--------DIHD---- 310 (357)
Q Consensus 246 RL~VfrSNKHIYAQVIDD--~~GkTLaSAST~EkdIK~~L~-St~NveAAa~VGkvLAeRakek--------GI~~---- 310 (357)
||+ ||+|||||||++ ..++|||+|||.|..... +. .++|++||..||.+||+||+++ ||.+
T Consensus 54 RLV---SNrhIyaQII~~~i~GD~tLaSAsS~EL~kyG-~k~g~~N~aAAy~tGlLiA~RAl~k~~ld~~y~G~~e~~g~ 129 (304)
T 3iz5_Q 54 RFV---TNKDITAQIVYATIAGDIVMAAAYSHELPRYG-LEVGLTNYAAAYCTGLLLARRVLTLRGLDQEYEGNVEATGE 129 (304)
T ss_dssp SSS---CSSCCEEEEEEEETTEEEEEEEEETTTGGGGS-CCSCTTSHHHHHHHHHHHHHHHHTTCSSCCCCCSSSCCCSC
T ss_pred eee---cCCcEEEEEEecCCCCCEEEEEEecCchhhcc-cCCCCCcHHHHHHHHHHHHHHHHHhhCCccccCCccccccc
Confidence 666 999999999998 355999999999999654 43 6789999999999999999999 9998
Q ss_pred --------------EEEcCCCCcchh--hHHHHHHHHHHHcCcEEE
Q 018389 311 --------------VVYTPRKGEKLE--GKLQIVLQAIIDNGVNVK 340 (357)
Q Consensus 311 --------------VVFDpR~GykYH--GRVKAfADAaRE~GL~FK 340 (357)
+++| +|+.+++ |||-|++.+|+++||.+=
T Consensus 130 ~~~ve~~~~~~~f~~~LD-iGL~rtttG~RVfaalKGA~DgGL~IP 174 (304)
T 3iz5_Q 130 DYYVEPADERRPFRALLD-VGLIRTTTGNRVFGALKGALDGGLDIP 174 (304)
T ss_dssp CCSSCCSSCSCCCSCEEE-CTTCCCCSSCHHHHHHHHHHTTTCCCC
T ss_pred eecccccCCCCCceEEEe-cCCcccccCceeEEeeccccccCcccC
Confidence 9999 8999999 999999999999999753
No 12
>2vqe_K 30S ribosomal protein S11, 30S ribosomal protein S6; tRNA-binding, rRNA-binding, metal-binding, zinc-finger, translation; HET: TM2 PAR; 2.5A {Thermus thermophilus} SCOP: c.55.4.1 PDB: 1gix_N* 1hnw_K* 1hnx_K* 1hnz_K* 1hr0_K 1ibk_K* 1ibl_K* 1ibm_K 1j5e_K 1jgo_N* 1jgp_N* 1jgq_N* 1ml5_N* 1n32_K* 1n33_K* 1n34_K 1n36_K 1xmo_K* 1xmq_K* 1xnq_K* ...
Probab=95.57 E-value=0.089 Score=44.88 Aligned_cols=88 Identities=17% Similarity=0.077 Sum_probs=69.6
Q ss_pred eEEEEEecCCeEEEEEEeCCCCeEEEEEcccchhhhcccCCCCCHHHHHHHHHHHHHHHHhCCCCEEE--EcCCCCcchh
Q 018389 245 FCLDIYISKASVRACIVHRVTSKVVVVAHSISKDMKFDLDSTRNATACAAVGGILAQRALADDIHDVV--YTPRKGEKLE 322 (357)
Q Consensus 245 fRL~VfrSNKHIYAQVIDD~~GkTLaSAST~EkdIK~~L~St~NveAAa~VGkvLAeRakekGI~~VV--FDpR~GykYH 322 (357)
..+.|+-|.+.....|.| .+|.++..+|+-.-.+|..- ...--||..+++.+|++|++.||..|. +- -.| -
T Consensus 17 gi~hI~as~NNTivtiTd-~~G~~~~~~SaG~~gfKg~r--k~tp~AA~~aa~~~~~~~~~~Gi~~v~V~vk-G~G---~ 89 (129)
T 2vqe_K 17 GRAYIHASYNNTIVTITD-PDGNPITWSSGGVIGYKGSR--KGTPYAAQLAALDAAKKAMAYGMQSVDVIVR-GTG---A 89 (129)
T ss_dssp EEEEEEECSSCEEEEEEC-TTSCEEEECCTTTTTCCSGG--GGSHHHHHHHHHHHHHHHHTTTCCEEEEEEE-SCC---T
T ss_pred eEEEEEecCCCEEEEEEc-CCCCEEEEEeccceeEcCCC--cCCHHHHHHHHHHHHHHHHHhCCeEEEEEEE-CCC---C
Confidence 468899999999999987 77999999998887787653 457799999999999999999999864 33 122 2
Q ss_pred hHHHHHHHHHHHcCcEEE
Q 018389 323 GKLQIVLQAIIDNGVNVK 340 (357)
Q Consensus 323 GRVKAfADAaRE~GL~FK 340 (357)
||- +++.+|...||++.
T Consensus 90 Gre-~airaL~~~Gl~I~ 106 (129)
T 2vqe_K 90 GRE-QAIRALQASGLQVK 106 (129)
T ss_dssp THH-HHHHHHHTSSSEEE
T ss_pred CHH-HHHHHHHHCCCEEE
Confidence 664 56788888898653
No 13
>3r8n_K 30S ribosomal protein S11; protein biosynthesis, RNA, tRNA, transfer RNA, 16S ribosomal subunit, RRF; 3.00A {Escherichia coli} PDB: 2ykr_K 3fih_K* 3iy8_K 3j18_K* 2wwl_K 3oar_K 3oaq_K 3ofb_K 3ofa_K 3ofp_K 3ofx_K 3ofy_K 3ofo_K 3r8o_K 4a2i_K 4gd1_K 4gd2_K 3i1m_K 1vs7_K* 3e1a_C ...
Probab=94.87 E-value=0.1 Score=43.85 Aligned_cols=89 Identities=12% Similarity=0.076 Sum_probs=64.3
Q ss_pred EEEEEecCCeEEEEEEeCCCCeEEEEEcccchhhhcccCCCCCHHHHHHHHHHHHHHHHhCCCCEEEEcCCCCcchhhHH
Q 018389 246 CLDIYISKASVRACIVHRVTSKVVVVAHSISKDMKFDLDSTRNATACAAVGGILAQRALADDIHDVVYTPRKGEKLEGKL 325 (357)
Q Consensus 246 RL~VfrSNKHIYAQVIDD~~GkTLaSAST~EkdIK~~L~St~NveAAa~VGkvLAeRakekGI~~VVFDpR~GykYHGRV 325 (357)
.+-|+-|.+.....|.| .+|.+|+.+|+-.-.+|..- ...--||...++.+|++|++.||..|..-.+ |.- -||-
T Consensus 8 i~hI~as~NNTivtiTD-~~G~~i~~~S~G~~gfKg~r--k~tp~AA~~aa~~~~~~~~~~Gi~~v~v~vk-G~G-~Gr~ 82 (117)
T 3r8n_K 8 VAHIHASFNNTIVTITD-RQGNALGWATAGGSGFRGSR--KSTPFAAQVAAERCADAVKEYGIKNLEVMVK-GPG-PGRE 82 (117)
T ss_dssp EEEEEECSSCEEEEEEC-TTSCCSEEEETGGGSCCGGG--GSSHHHHHHHHHHHHHHHTTSCCCEEEEEEE-CSS-SSTT
T ss_pred EEEEEcccCCEEEEEEc-CCCCEEEEEcCCccccCCCc--cCCHHHHHHHHHHHHHHHHHhCCcEEEEEEe-CCC-ccHH
Confidence 36688888888899986 77889988888877777654 3567899999999999999999998642211 211 1332
Q ss_pred HHHHHHHHHcCcEEE
Q 018389 326 QIVLQAIIDNGVNVK 340 (357)
Q Consensus 326 KAfADAaRE~GL~FK 340 (357)
+++.+|...||++.
T Consensus 83 -~airaL~~~Gl~I~ 96 (117)
T 3r8n_K 83 -STIRALNAAGFRIT 96 (117)
T ss_dssp -HHHHHHHHTTCEEE
T ss_pred -HHHHHHHhCCCEEE
Confidence 34455567898743
No 14
>3j20_M 30S ribosomal protein S11P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=94.10 E-value=0.43 Score=41.19 Aligned_cols=91 Identities=19% Similarity=0.129 Sum_probs=64.3
Q ss_pred EEEEEecCCeEEEEEEeCCCC-eEEEEEcccchhhhcccCCCCCHHHHHHHHHHHHHHHHhCCCCEEEEcCCC--Ccc--
Q 018389 246 CLDIYISKASVRACIVHRVTS-KVVVVAHSISKDMKFDLDSTRNATACAAVGGILAQRALADDIHDVVYTPRK--GEK-- 320 (357)
Q Consensus 246 RL~VfrSNKHIYAQVIDD~~G-kTLaSAST~EkdIK~~L~St~NveAAa~VGkvLAeRakekGI~~VVFDpR~--Gyk-- 320 (357)
.+-|+-|-+.....|.| .+| .||+.+|.-...++.. ..+.--||...++.+|++|++.||..|..-.++ |.+
T Consensus 16 i~hI~asfNNTivtiTD-~~G~~~i~~~S~G~~gfkg~--~ksTp~AA~~aa~~~~~~a~e~Gi~~v~V~vkG~gg~~~~ 92 (137)
T 3j20_M 16 IAHIYSSFNNTIIHITD-ITGAETISRWSGGMVVKADR--DEPSPYAAMLAARRAAEEALEKGIVGVHIRVRAPGGSKSK 92 (137)
T ss_dssp EEEEEECSSCEEEEEEE-SSSCSEEEEEEGGGTCSCTT--TSSSHHHHHHHHHHHHHHHHHHTEEEEEEEEECCCSSSCC
T ss_pred EEEEEcCCCCEEEEEEc-CCCCEEEEEEccceeeecCC--ccCCHHHHHHHHHHHHHHHHHcCCeEEEEEEECCCCCCCc
Confidence 47788899999999988 557 5898777666655542 235678999999999999999999987533233 221
Q ss_pred --hhhHHHHHHHHHHHcCcEEE
Q 018389 321 --LEGKLQIVLQAIIDNGVNVK 340 (357)
Q Consensus 321 --YHGRVKAfADAaRE~GL~FK 340 (357)
--||-.| +.+|...||++.
T Consensus 93 ~pG~Gresa-iraL~~~Gl~I~ 113 (137)
T 3j20_M 93 TPGPGAQAA-IRALARAGLKIG 113 (137)
T ss_dssp SCCTHHHHH-HHHHHHHTCEEE
T ss_pred CCCCcHHHH-HHHHHhCCCEEE
Confidence 1365444 456666798753
No 15
>3bbn_K Ribosomal protein S11; small ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea} SCOP: i.1.1.1
Probab=93.59 E-value=0.1 Score=45.27 Aligned_cols=88 Identities=15% Similarity=0.141 Sum_probs=69.1
Q ss_pred eEEEEEecCCeEEEEEEeCCCCeEEEEEcccchhhhcccCCCCCHHHHHHHHHHHHHHHHhCCCCEEE--EcCCCCcchh
Q 018389 245 FCLDIYISKASVRACIVHRVTSKVVVVAHSISKDMKFDLDSTRNATACAAVGGILAQRALADDIHDVV--YTPRKGEKLE 322 (357)
Q Consensus 245 fRL~VfrSNKHIYAQVIDD~~GkTLaSAST~EkdIK~~L~St~NveAAa~VGkvLAeRakekGI~~VV--FDpR~GykYH 322 (357)
..+.|+-|.++....|.| .+|.+++.+|+-.-.+|..- ...--||..+++.+|++|++.||..|. +- --| -
T Consensus 30 gi~hI~as~NNTivtiTD-~~G~~i~~~SaG~~GfKg~r--ksTp~AA~~aa~~~~~~a~e~Gi~~v~V~vk-G~G---~ 102 (140)
T 3bbn_K 30 GVIHVQASFNNTIVTVTD-VRGRVVSWASAGTCGFRGTK--RGTPFAAQTAAGNAIRTVVEQGMQRAEVMIK-GPG---L 102 (140)
T ss_dssp CEEEEEECSSCEEEEEEC-SSSCEEEEEETTTSSCCTTS--CSSHHHHHHHHTSGGGTSTTTCCCEEEEEEE-SCS---T
T ss_pred eEEEEEecCCCEEEEEEc-CCCCEEEEEeccceeEcccc--cCCHHHHHHHHHHHHHHHHHhCCeEEEEEEE-CCC---C
Confidence 468999999999999987 77999999998877787753 567899999999999999999999864 33 122 2
Q ss_pred hHHHHHHHHHHHcCcEEE
Q 018389 323 GKLQIVLQAIIDNGVNVK 340 (357)
Q Consensus 323 GRVKAfADAaRE~GL~FK 340 (357)
||- +++.+|...||++.
T Consensus 103 GRe-aairaL~~~Gl~I~ 119 (140)
T 3bbn_K 103 GRD-AALRAIRRSGILLS 119 (140)
T ss_dssp TSS-HHHHHHHTTTCEEE
T ss_pred cHH-HHHHHHHHCCCEEE
Confidence 543 56777778898653
No 16
>2xzm_K RPS14E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_K 3j0o_K 3j0l_K 2zkq_k 3iz6_K 3jyv_K*
Probab=93.42 E-value=0.25 Score=43.39 Aligned_cols=93 Identities=15% Similarity=0.119 Sum_probs=61.8
Q ss_pred eEEEEEecCCeEEEEEEeCCCCeEEEEEcccchhhhcccCCCCCHHHHHHHHHHHHHHHHhCCCCEEEEcCC--CCcc--
Q 018389 245 FCLDIYISKASVRACIVHRVTSKVVVVAHSISKDMKFDLDSTRNATACAAVGGILAQRALADDIHDVVYTPR--KGEK-- 320 (357)
Q Consensus 245 fRL~VfrSNKHIYAQVIDD~~GkTLaSAST~EkdIK~~L~St~NveAAa~VGkvLAeRakekGI~~VVFDpR--~Gyk-- 320 (357)
..+-|+-|.+.....|.| .+|.++++.||---..+..- ..+.--||...++.+|++|++.||..|..-.+ +|.+
T Consensus 29 gi~hI~asfNNTiVtiTD-~~G~~~~~~ssgg~~~k~~r-~ksTpyAAq~aa~~~a~~a~e~Gi~~v~V~vkG~gg~~~k 106 (151)
T 2xzm_K 29 GVCHIMATWNDTFIHVTD-LSGRETLVRVTGGMKVKADR-EESSPYAAMQAAIDVVNRCKELKINALHIKLRAKGGVETK 106 (151)
T ss_dssp EEEEEEBCSSCBCCEEEC-TTCCSEEEECCHHHHCSSGG-GGSCHHHHHHHHHHHHHHHHHHTCCEEEEEEECCCTTSCC
T ss_pred eEEEEEccCCCEEEEEEC-CCCCEEEEEecCcceEeCCC-CcCCHHHHHHHHHHHHHHHHHcCCeEEEEEEEcCCCCCcc
Confidence 368888898899999987 55653434455443343321 13466788999999999999999998753322 2221
Q ss_pred --hhhHHHHHHHHHHHcCcEEE
Q 018389 321 --LEGKLQIVLQAIIDNGVNVK 340 (357)
Q Consensus 321 --YHGRVKAfADAaRE~GL~FK 340 (357)
--|| ++.+.+|...||++.
T Consensus 107 gpG~Gr-esairaL~~~GlkI~ 127 (151)
T 2xzm_K 107 QPGPGA-QSALRALARSGMKIG 127 (151)
T ss_dssp SCCSHH-HHHHHHHHHTSCEEE
T ss_pred CCCccH-HHHHHHHHHCCCEEE
Confidence 1355 566677778898754
No 17
>3u5c_O RP59A, 40S ribosomal protein S14-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_K 3o30_H 3o2z_H 3u5g_O 1s1h_K 3jyv_K*
Probab=88.50 E-value=0.85 Score=39.36 Aligned_cols=91 Identities=18% Similarity=0.189 Sum_probs=62.5
Q ss_pred EEEEEecCCeEEEEEEeCCCCeEEEEEcccchhhhcccCCCCCHHHHHHHHHHHHHHHHhCCCCEEEEcCC--CCcch--
Q 018389 246 CLDIYISKASVRACIVHRVTSKVVVVAHSISKDMKFDLDSTRNATACAAVGGILAQRALADDIHDVVYTPR--KGEKL-- 321 (357)
Q Consensus 246 RL~VfrSNKHIYAQVIDD~~GkTLaSAST~EkdIK~~L~St~NveAAa~VGkvLAeRakekGI~~VVFDpR--~GykY-- 321 (357)
.+-|+-|.+.....|.| .+|.++...|+-.-.+|..- ..+.--||...++.+|++|++.||..|..-.| +|.+.
T Consensus 16 i~hI~asfNNTivtvTD-~~G~~~~~~ssG~~gfKg~r-~ksTpyAAq~aa~~~a~~a~e~Gi~~v~V~vra~gg~~~kg 93 (137)
T 3u5c_O 16 VARIYASFNDTFVHVTD-LSGKETIARVTGGMKVKADR-DESSPYAAMLAAQDVAAKCKEVGITAVHVKIRATGGTRTKT 93 (137)
T ss_dssp ECCEEEETTEEEECCEE-TTSSSCCCCCBTTTTSCCST-TTTCHHHHHHHHHHHHHHHHHHTCCEEECEEECSCTTSCCS
T ss_pred EEEEEccCCCEEEEEEc-CCCCEEEEEeCCCcEEeCCc-ccCCHHHHHHHHHHHHHHHHHcCCeEEEEEEeccCCCcccC
Confidence 35688888888889987 66777766677666676532 13466789999999999999999998753322 22222
Q ss_pred --hhHHHHHHHHHHHcCcEE
Q 018389 322 --EGKLQIVLQAIIDNGVNV 339 (357)
Q Consensus 322 --HGRVKAfADAaRE~GL~F 339 (357)
-||- +.+.+|...||++
T Consensus 94 pG~Gr~-sairaL~~~Gl~I 112 (137)
T 3u5c_O 94 PGPGGQ-AALRALARSGLRI 112 (137)
T ss_dssp CCGGGH-HHHHHHHTTTCEE
T ss_pred CCcchH-HHHHHHHhCCCEE
Confidence 2543 3445666779865
No 18
>2fvy_A D-galactose-binding periplasmic protein; periplasmic binding protien, hinge, chemotaxis, transport,; HET: BGC; 0.92A {Escherichia coli} SCOP: c.93.1.1 PDB: 1glg_A* 2fw0_A* 2gbp_A* 2qw1_A* 2hph_A* 2ipn_A* 2ipm_A* 2ipl_A* 1gca_A* 1gcg_A 3ga5_A* 3gbp_A*
Probab=54.05 E-value=40 Score=28.66 Aligned_cols=56 Identities=16% Similarity=0.213 Sum_probs=39.5
Q ss_pred CCHHHHHHHHHHHHHHHHh--------CCCCEEEE--cCCCCcchhhHHHHHHHHHHHcCcEEEEE
Q 018389 287 RNATACAAVGGILAQRALA--------DDIHDVVY--TPRKGEKLEGKLQIVLQAIIDNGVNVKVK 342 (357)
Q Consensus 287 ~NveAAa~VGkvLAeRake--------kGI~~VVF--DpR~GykYHGRVKAfADAaRE~GL~FK~~ 342 (357)
.|..++..+++.|++.+++ .|...|+| .+.+..-...|+..|.+++++.|+.+...
T Consensus 111 d~~~~g~~~~~~L~~~~~~~~~~~~~g~g~~~i~~i~~~~~~~~~~~R~~gf~~~l~~~g~~~~~~ 176 (309)
T 2fvy_A 111 DSKESGIIQGDLIAKHWAANQGWDLNKDGQIQFVLLKGEPGHPDAEARTTYVIKELNDKGIKTEQL 176 (309)
T ss_dssp CHHHHHHHHHHHHHHHHHHCGGGCTTCSSSEEEEEEECSTTCHHHHHHHHHHHHHHHHTTCCEEEE
T ss_pred CHHHHHHHHHHHHHHHHhhcccccccCCCceEEEEEEcCCCCccHHHHHHHHHHHHHhcCCceEEE
Confidence 3667888888888887654 67666653 22222334689999999999999987643
No 19
>4fnq_A Alpha-galactosidase AGAB; glycoside hydrolase, hydrolase; 1.80A {Geobacillus stearothermophilus} PDB: 4fnr_A 4fnu_A* 4fnt_A* 4fns_A* 4fnp_A*
Probab=51.53 E-value=16 Score=38.08 Aligned_cols=45 Identities=16% Similarity=0.102 Sum_probs=36.0
Q ss_pred HHHHHHhCCCCEEEEcCCCCc------------------chhhHHHHHHHHHHHcCcEEEEEee
Q 018389 299 LAQRALADDIHDVVYTPRKGE------------------KLEGKLQIVLQAIIDNGVNVKVKLK 344 (357)
Q Consensus 299 LAeRakekGI~~VVFDpR~Gy------------------kYHGRVKAfADAaRE~GL~FK~~lk 344 (357)
+|++|++.|++-++.| -+.+ ++=+-+++|++.+++.|++|.+.+-
T Consensus 351 ~ad~aa~lG~e~fviD-DGWf~~r~~d~~~lGdW~~d~~kFP~Glk~Lad~vh~~GmkfGLW~e 413 (729)
T 4fnq_A 351 IAKTEAELGIELFVLD-DGWFGKRDDDRRSLGDWIVNRRKLPNGLDGLAKQVNELGMQFGLWVE 413 (729)
T ss_dssp HHHHHHHHTCCEEEEC-SCCBTTCCSTTSCTTCCSBCTTTCTTHHHHHHHHHHHTTCEEEEEEC
T ss_pred HHHHHHhcCccEEEEc-ceeecCCCCCcccCCcEEEChhhcCccHHHHHHHHHHCCCEEEEEee
Confidence 6888999999999988 3432 1223499999999999999999873
No 20
>3hcw_A Maltose operon transcriptional repressor; RNA-binding, PSI-2, NYSGXRC, STRU genomics, protein structure initiative; 2.20A {Staphylococcus aureus subsp}
Probab=50.94 E-value=35 Score=29.37 Aligned_cols=50 Identities=8% Similarity=0.183 Sum_probs=33.5
Q ss_pred CHHHHHHHHHHHHHHHHhCCCCEEEEc--CCCCcchhhHHHHHHHHHHHcCcEEEE
Q 018389 288 NATACAAVGGILAQRALADDIHDVVYT--PRKGEKLEGKLQIVLQAIIDNGVNVKV 341 (357)
Q Consensus 288 NveAAa~VGkvLAeRakekGI~~VVFD--pR~GykYHGRVKAfADAaRE~GL~FK~ 341 (357)
|..++..+ ++.+.+.|-.+|.|= +........|...|.+++++.|+.+.+
T Consensus 115 ~~~~~~~a----~~~L~~~G~~~I~~i~~~~~~~~~~~R~~Gf~~al~~~g~~~~~ 166 (295)
T 3hcw_A 115 NILASENL----TRHVIEQGVDELIFITEKGNFEVSKDRIQGFETVASQFNLDYQI 166 (295)
T ss_dssp HHHHHHHH----HHHHHHHCCSEEEEEEESSCCHHHHHHHHHHHHHHHHTTCEEEE
T ss_pred cHHHHHHH----HHHHHHcCCccEEEEcCCccchhHHHHHHHHHHHHHHcCCCeeE
Confidence 44555444 445555688887653 222234568999999999999998763
No 21
>2wvv_A Alpha-L-fucosidase; alpha-L-fucose, hydrolase, glycoside hydrolase family 29; 1.73A {Bacteroides thetaiotaomicron} PDB: 2xii_A* 2xib_A* 2wvv_B 2wvt_A* 2wvu_A* 2wvs_A*
Probab=50.78 E-value=19 Score=35.47 Aligned_cols=49 Identities=22% Similarity=0.200 Sum_probs=37.1
Q ss_pred HHHHHHHHhCCCCEEEEcCC--CCc--------ch--------hhHHHHHHHHHHHcCcEEEEEeec
Q 018389 297 GILAQRALADDIHDVVYTPR--KGE--------KL--------EGKLQIVLQAIIDNGVNVKVKLKQ 345 (357)
Q Consensus 297 kvLAeRakekGI~~VVFDpR--~Gy--------kY--------HGRVKAfADAaRE~GL~FK~~lkq 345 (357)
...|+.++++|..-||+..+ .|| .| .--|+.|++|+|+.||.|.+++-.
T Consensus 81 ~~Wa~~~k~AGakyvvlTaKHHDGF~lwpSk~t~~n~~~~~~krDlv~el~~A~rk~Glk~GlY~S~ 147 (450)
T 2wvv_A 81 KKWAKMAKEMGTKYVKITTKHHEGFCLWPSKYTKYTVANTPYKRDILGELVKAYNDEGIDVHFYFSV 147 (450)
T ss_dssp HHHHHHHHHHTCSEEEEEEECTTCCBSSCCTTCSCBGGGSTTCSCHHHHHHHHHHHTTCEEEEEEES
T ss_pred HHHHHHHHHcCCcEEEEEEeecCCccccCCCCCCCccccCCCCCChHHHHHHHHHHcCCeEEEEecH
Confidence 45789999999999886531 121 11 256999999999999999998753
No 22
>3e61_A Putative transcriptional repressor of ribose OPER; structural genomics, DNA-binding, transcripti regulation, PSI-2; 2.00A {Staphylococcus saprophyticus subsp}
Probab=46.03 E-value=30 Score=29.12 Aligned_cols=47 Identities=11% Similarity=0.075 Sum_probs=30.7
Q ss_pred HHHHHHHHHHhCCCCEEEEc--CCCCcchhhHHHHHHHHHHHcCcEEEE
Q 018389 295 VGGILAQRALADDIHDVVYT--PRKGEKLEGKLQIVLQAIIDNGVNVKV 341 (357)
Q Consensus 295 VGkvLAeRakekGI~~VVFD--pR~GykYHGRVKAfADAaRE~GL~FK~ 341 (357)
.|+.+++.+.+.|-..|.|= +....-...|...|.+++++.|+.+..
T Consensus 109 ~g~~a~~~L~~~G~~~i~~i~~~~~~~~~~~R~~gf~~~l~~~~~~~~~ 157 (277)
T 3e61_A 109 GGQLQAEVVRKGKGKNVLIVHENLLIDAFHQRVQGIKYILDQQRIDYKM 157 (277)
T ss_dssp HHHHHHHHHHHTTCCSEEEEESCTTSHHHHHHHHHHHHHHHC---CEEE
T ss_pred HHHHHHHHHHHCCCCeEEEEeCCCCCccHHHHHHHHHHHHHHcCCCccc
Confidence 45556666666798887653 222334458999999999999998875
No 23
>1hjs_A Beta-1,4-galactanase; 4-galactanases, family 53 glycoside hydrolase, thermostability, PH optimum, CLAN GH-A, thermophIle, alkalophIle; HET: NAG EPE; 1.87A {Thielavia heterothallica} SCOP: c.1.8.3 PDB: 1hju_A* 1hjq_A*
Probab=45.67 E-value=44 Score=31.20 Aligned_cols=44 Identities=14% Similarity=0.150 Sum_probs=36.8
Q ss_pred HHHHHhCCCCEEEE----cCCCCcchhhHHHHHHHHHHHcCcEEEEEe
Q 018389 300 AQRALADDIHDVVY----TPRKGEKLEGKLQIVLQAIIDNGVNVKVKL 343 (357)
Q Consensus 300 AeRakekGI~~VVF----DpR~GykYHGRVKAfADAaRE~GL~FK~~l 343 (357)
-+.+++.|+..|.. ||.+|+-+-..+..+++.+++.||++-+.|
T Consensus 33 ~~ilk~~G~N~VRi~~w~~P~~g~~~~~~~~~~~~~A~~~GlkV~ld~ 80 (332)
T 1hjs_A 33 ENILAANGVNTVRQRVWVNPADGNYNLDYNIAIAKRAKAAGLGVYIDF 80 (332)
T ss_dssp HHHHHHTTCCEEEEEECSSCTTCTTSHHHHHHHHHHHHHTTCEEEEEE
T ss_pred HHHHHHCCCCEEEEeeeeCCCCCcCCHHHHHHHHHHHHHCCCEEEEEe
Confidence 45667899999865 566777777899999999999999999986
No 24
>1byk_A Protein (trehalose operon repressor); LACI family, phosphate binding, protein structure, trehalose repressor, gene regulation; HET: T6P; 2.50A {Escherichia coli} SCOP: c.93.1.1
Probab=44.07 E-value=45 Score=27.76 Aligned_cols=45 Identities=13% Similarity=0.051 Sum_probs=30.9
Q ss_pred HHHHHHHHHhCCCCEEEEcC-C--CCcchhhHHHHHHHHHHHcCcEEE
Q 018389 296 GGILAQRALADDIHDVVYTP-R--KGEKLEGKLQIVLQAIIDNGVNVK 340 (357)
Q Consensus 296 GkvLAeRakekGI~~VVFDp-R--~GykYHGRVKAfADAaRE~GL~FK 340 (357)
|+.+++.+.+.|-.+|.|=. . ...-...|.+.|.+++++.|+.+.
T Consensus 103 ~~~a~~~L~~~G~~~I~~i~~~~~~~~~~~~R~~gf~~al~~~g~~~~ 150 (255)
T 1byk_A 103 IKILMQRLYDQGHRNISYLGVPHSDVTTGKRRHEAYLAFCKAHKLHPV 150 (255)
T ss_dssp HHHHHHHHHHTTCCCEEEECCCTTSTTTTHHHHHHHHHHHHHTTCCCE
T ss_pred HHHHHHHHHHcCCCeEEEEecCCCCcccHHHHHHHHHHHHHHcCCCcc
Confidence 44555556667988887541 1 112346899999999999998754
No 25
>2w4l_A DCMP deaminse, deoxycytidylate deaminase; pyrimidine metabolism, nucleotide biosynthesis, zinc, hexamer, hydrolase, metal-binding, phosphoprotein; 2.10A {Homo sapiens}
Probab=43.80 E-value=33 Score=29.93 Aligned_cols=40 Identities=15% Similarity=0.214 Sum_probs=27.5
Q ss_pred HHHHHHhCCCCEEEEcCCCCcchh--hHHHHHHHHHHHcCcEEEE
Q 018389 299 LAQRALADDIHDVVYTPRKGEKLE--GKLQIVLQAIIDNGVNVKV 341 (357)
Q Consensus 299 LAeRakekGI~~VVFDpR~GykYH--GRVKAfADAaRE~GL~FK~ 341 (357)
=|+...++||..|||-. . .|. .-..+-.+-|+++||++..
T Consensus 110 Ca~aIi~agI~rVVy~~-~--~~~d~~~~~~~~~~L~~aGI~V~~ 151 (178)
T 2w4l_A 110 CAKLIIQAGIKEVIFMS-D--KYHDSDEATAARLLFNMAGVTFRK 151 (178)
T ss_dssp HHHHHHHTTCCEEEEEE-C--TTTTSHHHHHHHHHHHHHTCEEEE
T ss_pred HHHHHHHHCCCEEEEEe-c--cCCCCcchHHHHHHHHHCCCEEEE
Confidence 35667789999999962 2 222 2222337889999999877
No 26
>1dbq_A Purine repressor; transcription regulation, DNA-binding regulatory protein; 2.20A {Escherichia coli} SCOP: c.93.1.1 PDB: 1jhz_A
Probab=42.49 E-value=30 Score=29.25 Aligned_cols=45 Identities=13% Similarity=0.194 Sum_probs=28.7
Q ss_pred HHHHHHHHHhCCCCEEEEcC-CCC-cchhhHHHHHHHHHHHcCcEEE
Q 018389 296 GGILAQRALADDIHDVVYTP-RKG-EKLEGKLQIVLQAIIDNGVNVK 340 (357)
Q Consensus 296 GkvLAeRakekGI~~VVFDp-R~G-ykYHGRVKAfADAaRE~GL~FK 340 (357)
|+.+|+.+.+.|-.+|.|=. ..+ .-.+.|+..|.+++++.|+.+.
T Consensus 114 ~~~~~~~L~~~G~~~i~~i~~~~~~~~~~~R~~g~~~~l~~~g~~~~ 160 (289)
T 1dbq_A 114 GYMAGRYLIERGHREIGVIPGPLERNTGAGRLAGFMKAMEEAMIKVP 160 (289)
T ss_dssp HHHHHHHHHHTTCCSEEEECCC------CHHHHHHHHHHHHTTCCCC
T ss_pred HHHHHHHHHHCCCCeEEEEecCCccccHHHHHHHHHHHHHHCCCCCC
Confidence 44455555566888876531 112 2345899999999999998754
No 27
>2qu7_A Putative transcriptional regulator; structural genomics, PSI-2, protein structure initiative; 2.30A {Staphylococcus saprophyticus subsp}
Probab=42.46 E-value=33 Score=29.14 Aligned_cols=45 Identities=20% Similarity=0.131 Sum_probs=30.6
Q ss_pred HHHHHHHHHhCCCCEEEEc--CCCCcchhhHHHHHHHHHHHcCcEEE
Q 018389 296 GGILAQRALADDIHDVVYT--PRKGEKLEGKLQIVLQAIIDNGVNVK 340 (357)
Q Consensus 296 GkvLAeRakekGI~~VVFD--pR~GykYHGRVKAfADAaRE~GL~FK 340 (357)
|+.+++.+.+.|..+|.|= +....-...|.+.|.+++++.|+.+.
T Consensus 110 g~~a~~~L~~~G~~~I~~i~~~~~~~~~~~R~~gf~~~l~~~g~~~~ 156 (288)
T 2qu7_A 110 AYIATKRVLESTCKEVGLLLANPNISTTIGRKNGYNKAISEFDLNVN 156 (288)
T ss_dssp HHHHHHHHHTSSCCCEEEEECCTTSHHHHHHHHHHHHHHHHTTCCCC
T ss_pred HHHHHHHHHHcCCCcEEEEecCCCCCCHHHHHHHHHHHHHHcCCCCC
Confidence 4555566666788887642 11222345899999999999998753
No 28
>2h0a_A TTHA0807, transcriptional regulator; repressor, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.80A {Thermus thermophilus}
Probab=42.45 E-value=38 Score=28.36 Aligned_cols=45 Identities=7% Similarity=-0.030 Sum_probs=30.3
Q ss_pred HHHHHHHHHhCCCCEEEEc--CC-C---Ccchh-hHHHHHHHHHHHcCcEEE
Q 018389 296 GGILAQRALADDIHDVVYT--PR-K---GEKLE-GKLQIVLQAIIDNGVNVK 340 (357)
Q Consensus 296 GkvLAeRakekGI~~VVFD--pR-~---GykYH-GRVKAfADAaRE~GL~FK 340 (357)
|+.+++.+.+.|-.+|.|= +. . ..-.+ .|...|.+++++.|+.+.
T Consensus 102 ~~~a~~~L~~~G~~~i~~i~~~~~~~~~~~~~~~~R~~gf~~~l~~~g~~~~ 153 (276)
T 2h0a_A 102 GRLAGAYLARFPGPIFAIAVEEEPDRAFRRTVFAERMAGFQEALKEAGRPFS 153 (276)
T ss_dssp HHHHHHHHTTSSSCEEEEEECCSCCC---CCHHHHHHHHHHHHHHHTTCCCC
T ss_pred HHHHHHHHHHcCCCeEEEEecCcccccccchhHHHHHHHHHHHHHHcCCCCC
Confidence 4455555666798887653 11 1 22346 789999999999998653
No 29
>3clk_A Transcription regulator; 11017J, PSI-II, NYSGXRC, dimer, structural genomics, protein structure initiative; 2.08A {Lactobacillus plantarum WCFS1}
Probab=41.51 E-value=39 Score=28.82 Aligned_cols=44 Identities=7% Similarity=0.027 Sum_probs=30.4
Q ss_pred HHHHHHHHHhCCCCEEEEc--CCCCcchhhHHHHHHHHHHHcCcEE
Q 018389 296 GGILAQRALADDIHDVVYT--PRKGEKLEGKLQIVLQAIIDNGVNV 339 (357)
Q Consensus 296 GkvLAeRakekGI~~VVFD--pR~GykYHGRVKAfADAaRE~GL~F 339 (357)
|+.+++.+.+.|-.+|.|= +....-...|.+.|.+++++.|+.+
T Consensus 113 g~~a~~~L~~~G~~~i~~i~~~~~~~~~~~R~~gf~~~l~~~g~~~ 158 (290)
T 3clk_A 113 GYQATNLLINEGHRQIGIAGIDQYPYTGRKRLAGYKKALKEANIAI 158 (290)
T ss_dssp HHHHHHHHHTTTCCSEEEESCCCCTTTHHHHHHHHHHHHHHTTCCC
T ss_pred HHHHHHHHHHcCCCEEEEEeCCCCCcchHHHHHHHHHHHHHcCCCC
Confidence 4555566666788887653 1122234589999999999999875
No 30
>3cs3_A Sugar-binding transcriptional regulator, LACI FAM; structural genomics, sugar-binding transcriptional regulator structure initiative; 2.40A {Enterococcus faecalis}
Probab=41.35 E-value=50 Score=27.91 Aligned_cols=45 Identities=13% Similarity=0.218 Sum_probs=30.9
Q ss_pred HHHHHHHHHhCCCCEEEEc--CCCCcchhhHHHHHHHHHHHcCcEEE
Q 018389 296 GGILAQRALADDIHDVVYT--PRKGEKLEGKLQIVLQAIIDNGVNVK 340 (357)
Q Consensus 296 GkvLAeRakekGI~~VVFD--pR~GykYHGRVKAfADAaRE~GL~FK 340 (357)
|+.+++.+.+.|-.+|.|= +........|...|.+++++.|+.+.
T Consensus 106 ~~~a~~~L~~~G~~~i~~i~~~~~~~~~~~R~~gf~~~l~~~g~~~~ 152 (277)
T 3cs3_A 106 ATQAIEQFVNVGSKKVLLLSGPEKGYDSQERLAVSTRELTRFGIPYE 152 (277)
T ss_dssp HHHHHHHHHHTTCSCEEEEECCTTSHHHHHHHHHHHHHHHHTTCCEE
T ss_pred HHHHHHHHHHcCCceEEEEeCCccCccHHHHHHHHHHHHHHcCCCee
Confidence 4455555566788887643 11222345899999999999999876
No 31
>2pr7_A Haloacid dehalogenase/epoxide hydrolase family; NP_599989.1, uncharacterized protein, structural genomics; 1.44A {Corynebacterium glutamicum atcc 13032}
Probab=41.27 E-value=39 Score=24.98 Aligned_cols=34 Identities=18% Similarity=0.211 Sum_probs=17.4
Q ss_pred CCCEEEEcCCCCcchhhH-----HHHHHHHHHHcCcEEEE
Q 018389 307 DIHDVVYTPRKGEKLEGK-----LQIVLQAIIDNGVNVKV 341 (357)
Q Consensus 307 GI~~VVFDpR~GykYHGR-----VKAfADAaRE~GL~FK~ 341 (357)
||..|+|| ..|-++... +..+++.|++.|+.+-+
T Consensus 1 ~~k~i~~D-~DgtL~~~~~~~~~~~~~l~~L~~~G~~~~i 39 (137)
T 2pr7_A 1 GMRGLIVD-YAGVLDGTDEDQRRWRNLLAAAKKNGVGTVI 39 (137)
T ss_dssp CCCEEEEC-STTTTSSCHHHHHHHHHHHHHHHHTTCEEEE
T ss_pred CCcEEEEe-ccceecCCCccCccHHHHHHHHHHCCCEEEE
Confidence 45556666 344332211 44555666666665544
No 32
>3kke_A LACI family transcriptional regulator; structural genomics, DNA-binding, transcription regulation, PSI-2; 2.20A {Mycobacterium smegmatis str}
Probab=40.51 E-value=36 Score=29.46 Aligned_cols=45 Identities=11% Similarity=0.258 Sum_probs=31.5
Q ss_pred HHHHHHHHHhCCCCEEEEc--CCCCcchhhHHHHHHHHHHHcCcEEE
Q 018389 296 GGILAQRALADDIHDVVYT--PRKGEKLEGKLQIVLQAIIDNGVNVK 340 (357)
Q Consensus 296 GkvLAeRakekGI~~VVFD--pR~GykYHGRVKAfADAaRE~GL~FK 340 (357)
|+.+++.+.+.|-..|.|= +....-...|...|.+++++.|+.+.
T Consensus 119 g~~a~~~L~~~G~~~I~~i~~~~~~~~~~~R~~Gf~~al~~~g~~~~ 165 (303)
T 3kke_A 119 GGIATEHLITLGHSRIAFISGTAIHDTAQRRKEGYLETLASAGLRSE 165 (303)
T ss_dssp HHHHHHHHHHTTCCSEEEEESCSSCHHHHHHHHHHHHHHHHTTCCCC
T ss_pred HHHHHHHHHHCCCCeEEEEeCCCcCccHHHHHHHHHHHHHHcCCCCC
Confidence 4555556666798887653 12223455899999999999998764
No 33
>3gv0_A Transcriptional regulator, LACI family; transcription regulator, PSI-II, structural genomics structure initiative; 2.35A {Agrobacterium tumefaciens str}
Probab=40.22 E-value=65 Score=27.46 Aligned_cols=47 Identities=9% Similarity=-0.118 Sum_probs=33.5
Q ss_pred HHHHHHHHHHhCCCCEEEEcC-CCC-cchhhHHHHHHHHHHHcCcEEEE
Q 018389 295 VGGILAQRALADDIHDVVYTP-RKG-EKLEGKLQIVLQAIIDNGVNVKV 341 (357)
Q Consensus 295 VGkvLAeRakekGI~~VVFDp-R~G-ykYHGRVKAfADAaRE~GL~FK~ 341 (357)
.|+.+++.+.+.|-.+|.|=. ..+ .-...|...|.+++++.|+.+..
T Consensus 114 ~g~~a~~~L~~~G~~~I~~i~~~~~~~~~~~R~~gf~~~l~~~g~~~~~ 162 (288)
T 3gv0_A 114 YAYEAVERLAQCGRKRIAVIVPPSRFSFHDHARKGFNRGIRDFGLTEFP 162 (288)
T ss_dssp HHHHHHHHHHHTTCCEEEEECCCTTSHHHHHHHHHHHHHHHHTTCEECC
T ss_pred HHHHHHHHHHHCCCCeEEEEcCCcccchHHHHHHHHHHHHHHcCCCcch
Confidence 455666677778999887541 112 23457999999999999998764
No 34
>3g85_A Transcriptional regulator (LACI family); transcription regulator, PSI-II, structural genomics structure initiative; 1.84A {Clostridium acetobutylicum atcc 824}
Probab=39.97 E-value=35 Score=28.93 Aligned_cols=45 Identities=7% Similarity=0.123 Sum_probs=30.8
Q ss_pred HHHHHHHHHhCCCCEEEEc--CCCCcchhhHHHHHHHHHHHcCcEEE
Q 018389 296 GGILAQRALADDIHDVVYT--PRKGEKLEGKLQIVLQAIIDNGVNVK 340 (357)
Q Consensus 296 GkvLAeRakekGI~~VVFD--pR~GykYHGRVKAfADAaRE~GL~FK 340 (357)
|+.+++.+.+.|-.+|.|= +....-...|...|.+++++.|+.+.
T Consensus 115 ~~~a~~~L~~~G~~~i~~i~~~~~~~~~~~R~~gf~~~l~~~~~~~~ 161 (289)
T 3g85_A 115 GEKASLLFAKKRYKSAAAILTESLNDAMDNRNKGFIETCHKNGIKIS 161 (289)
T ss_dssp HHHHHHHHHHTTCCBCEEEECCCSSHHHHHHHHHHHHHHHHTTCBCC
T ss_pred HHHHHHHHHHcCCCEEEEEeCCcccccHHHHHHHHHHHHHHcCCCCC
Confidence 4555666666788877643 12222345799999999999998764
No 35
>3gyb_A Transcriptional regulators (LACI-family transcriptional regulatory protein); protein structure initiative II(PSI II), nysgxrc; 1.60A {Corynebacterium glutamicum}
Probab=39.36 E-value=42 Score=28.24 Aligned_cols=48 Identities=6% Similarity=-0.011 Sum_probs=33.8
Q ss_pred HHHHHHHHHHhCCCCEEEEcC-CCCcchhhHHHHHHHHHHHcCcEEEEEe
Q 018389 295 VGGILAQRALADDIHDVVYTP-RKGEKLEGKLQIVLQAIIDNGVNVKVKL 343 (357)
Q Consensus 295 VGkvLAeRakekGI~~VVFDp-R~GykYHGRVKAfADAaRE~GL~FK~~l 343 (357)
.|+.+|+.+.+.|-.+|.|=. ..+. ...|...|.+++++.|+.+...+
T Consensus 105 ~g~~a~~~L~~~G~~~i~~i~~~~~~-~~~R~~gf~~~l~~~~~~~~~~~ 153 (280)
T 3gyb_A 105 GAEIATKHLIDLGHTHIAHLRVGSGA-GLRRFESFEATMRAHGLEPLSND 153 (280)
T ss_dssp HHHHHHHHHHHTTCCSEEEECCSSHH-HHHHHHHHHHHHHHTTCCCEECC
T ss_pred HHHHHHHHHHHCCCCeEEEEeCCCch-HHHHHHHHHHHHHHcCcCCCccc
Confidence 355555666667988877541 2223 67899999999999999877543
No 36
>2zxd_A Alpha-L-fucosidase, putative; TIM barrel, hydrolase; HET: ZXD; 2.15A {Thermotoga maritima} PDB: 2zwy_A* 2zx5_A* 2zx6_A* 2zx7_A* 2zwz_A* 2zx9_A* 2zxa_A* 2zxb_A* 2zx8_A* 1hl9_A* 1hl8_A* 1odu_A* 2wsp_A*
Probab=38.74 E-value=50 Score=32.75 Aligned_cols=48 Identities=15% Similarity=0.108 Sum_probs=37.0
Q ss_pred HHHHHHHHhCCCCEEEEcCC--CCc--------ch--------hhHHHHHHHHHHHcCcEEEEEee
Q 018389 297 GILAQRALADDIHDVVYTPR--KGE--------KL--------EGKLQIVLQAIIDNGVNVKVKLK 344 (357)
Q Consensus 297 kvLAeRakekGI~~VVFDpR--~Gy--------kY--------HGRVKAfADAaRE~GL~FK~~lk 344 (357)
...|+.++++|..-||+..+ .|+ .| ..-|+.|++|+|+.||.|.+++-
T Consensus 108 ~~Wa~~~k~AGakyvvlTaKHHDGF~lwpSk~t~~ns~~~~pkrDlv~El~~A~rk~Glk~GlY~S 173 (455)
T 2zxd_A 108 QEWADLFKKAGAKYVIPTTKHHDGFCLWGTKYTDFNSVKRGPKRDLVGDLAKAVREAGLRFGVYYS 173 (455)
T ss_dssp HHHHHHHHHTTCSEEEEEEECTTCCBSSCCSSCSCBTTTSTTCSCHHHHHHHHHHHTTCEEEEEEE
T ss_pred HHHHHHHHHhCCCEEEEEeeccCCccccCCCCCCCcccccCCCCChHHHHHHHHHHcCCeEEEEec
Confidence 56789999999999885531 011 11 14599999999999999999987
No 37
>3c3k_A Alanine racemase; structural genomics, protein structure initiative, NEW YORK research center for structural genomics, nysgxrc; 1.99A {Actinobacillus succinogenes}
Probab=37.95 E-value=40 Score=28.74 Aligned_cols=45 Identities=4% Similarity=0.016 Sum_probs=30.0
Q ss_pred HHHHHHHHHhCCCCEEEEc--CCCCcchhhHHHHHHHHHHHcCcEEE
Q 018389 296 GGILAQRALADDIHDVVYT--PRKGEKLEGKLQIVLQAIIDNGVNVK 340 (357)
Q Consensus 296 GkvLAeRakekGI~~VVFD--pR~GykYHGRVKAfADAaRE~GL~FK 340 (357)
|+.+++.+.+.|-.+|.|= +....-...|...|.+++++.|+.+.
T Consensus 112 g~~a~~~L~~~G~~~I~~i~~~~~~~~~~~R~~gf~~~l~~~g~~~~ 158 (285)
T 3c3k_A 112 SEYVVDQLVKSGKKRIALINHDLAYQYAQHRESGYLNRLKFHGLDYS 158 (285)
T ss_dssp HHHHHHHHHHTTCCCEEEEECCTTSHHHHHHHHHHHHHHHHHTCCCC
T ss_pred HHHHHHHHHHcCCCeEEEEeCCCccccHHHHHHHHHHHHHHcCCCce
Confidence 4445555556688887643 11122345899999999999998764
No 38
>3tev_A Glycosyl hyrolase, family 3; PSI-biology, midwest center for structural genomics, structu genomic, MCSG, hydrolase; 2.30A {Deinococcus radiodurans}
Probab=37.69 E-value=27 Score=33.66 Aligned_cols=55 Identities=15% Similarity=0.099 Sum_probs=41.9
Q ss_pred CCCCHHHHHHHHHHHHHHHHhCCCCE-------EEEcCCCCcchh-----------hHHHHHHHHHHHcCcEE
Q 018389 285 STRNATACAAVGGILAQRALADDIHD-------VVYTPRKGEKLE-----------GKLQIVLQAIIDNGVNV 339 (357)
Q Consensus 285 St~NveAAa~VGkvLAeRakekGI~~-------VVFDpR~GykYH-----------GRVKAfADAaRE~GL~F 339 (357)
.+-|.+.+..+|+++|+-+...||+- |.-+|++|-.+. --..|++++++++|+--
T Consensus 103 at~d~~l~~~~g~~~a~E~ra~Gi~~~~aPv~Dv~r~p~~~rig~RsfgeDP~lv~~~a~a~v~Glq~~gV~a 175 (351)
T 3tev_A 103 AADDQQLTEDVNAALARQLRSVGINWNFTPVLDINVNPANPVIGDRAYGSDAARVTRHGRAALAGHTREGVAP 175 (351)
T ss_dssp HHCCHHHHHHHHHHHHHHHHHHTCCEECCCBCCCCCCTTCCSSGGGSSCSSHHHHHHHHHHHHHHHHTTTCEE
T ss_pred hcCCHHHHHHHHHHHHHHHHHcCCCEeccceeEeccCCCCCcccccCCCCCHHHHHHHHHHHHHHHHHcCCeE
Confidence 34688999999999999999999995 335666554332 13678999999999753
No 39
>4h41_A Putative alpha-L-fucosidase; hydrolase, carbohydrate metabolism, HOST glycans, structural genomics; HET: MSE 1PE PE4 PG4 PG6; 1.80A {Bacteroides thetaiotaomicron}
Probab=37.29 E-value=39 Score=32.55 Aligned_cols=42 Identities=17% Similarity=0.184 Sum_probs=30.6
Q ss_pred HHHHhCCCCEEEEcCCCCcc----h------------h--hHHHHHHHHHHHcCcEEEEEe
Q 018389 301 QRALADDIHDVVYTPRKGEK----L------------E--GKLQIVLQAIIDNGVNVKVKL 343 (357)
Q Consensus 301 eRakekGI~~VVFDpR~Gyk----Y------------H--GRVKAfADAaRE~GL~FK~~l 343 (357)
+.++++||+.||+. +.++. | - --|..|++++++.||+|.|-|
T Consensus 61 ~~mK~~GikyvIl~-~~~~~gf~~~pS~~~~~~~~~~p~~Dlv~~~l~aa~k~Gmkv~~Gl 120 (340)
T 4h41_A 61 QHMKRIGIDTVIMI-RSGYRKFMTYPSPYLLKKGCYMPSVDLVDMYLRLAEKYNMKFYFGL 120 (340)
T ss_dssp HHHHHTTCCEEEES-CSEETTEESSCCHHHHHTTCCCCSBCHHHHHHHHHHHTTCEEEEEC
T ss_pred HHHHHcCCCEEEEE-EEeeCCeeccCcccccccCccCCcccHHHHHHHHHHHhCCeEEEec
Confidence 44689999999876 43321 1 0 239999999999999986643
No 40
>1c6v_A Protein (SIV integrase); DNA integration, DNA binding protein; 3.00A {Simian immunodeficiency virus} SCOP: c.55.3.2
Probab=36.16 E-value=64 Score=24.85 Aligned_cols=70 Identities=11% Similarity=0.024 Sum_probs=40.1
Q ss_pred EEEEEEeCCCCeEEEEEcccchhhhcccCCCCCHHHHHHHHHHHHHHHHhCCCCEEEEcCCCCcchhhHHHHHHHHHHHc
Q 018389 256 VRACIVHRVTSKVVVVAHSISKDMKFDLDSTRNATACAAVGGILAQRALADDIHDVVYTPRKGEKLEGKLQIVLQAIIDN 335 (357)
Q Consensus 256 IYAQVIDD~~GkTLaSAST~EkdIK~~L~St~NveAAa~VGkvLAeRakekGI~~VVFDpR~GykYHGRVKAfADAaRE~ 335 (357)
.+--+||+-++-+++..-+. .... .+...+.+.+...|+..++.| +|-.|.+. +|.+.+...
T Consensus 23 ~~l~~iD~~Sr~~~~~~~~~----------~~~~----~~~~~~~~~~~~~~~~~i~sD--nG~~f~s~--~~~~~~~~~ 84 (164)
T 1c6v_A 23 IVIVAVHVASGFIEAEVIPQ----------ETGR----QTALFLLKLAGRWPITHLHTD--NGANFASQ--EVKMVAWWA 84 (164)
T ss_dssp EEEEEECTTSCCEEEEECSS----------CSHH----HHHHHHHHHHTTSCCCEEECC--CCSSTTSS--HHHHHHHHH
T ss_pred EEEEEEEccCCEEEEEEcCC----------CchH----HHHHHHHHHHHhcCCCEEEeC--CchhhhhH--HHHHHHHHc
Confidence 44555888888777553221 1111 223334444555688888899 55566543 455566677
Q ss_pred CcEEEEEe
Q 018389 336 GVNVKVKL 343 (357)
Q Consensus 336 GL~FK~~l 343 (357)
||.....-
T Consensus 85 gi~~~~~~ 92 (164)
T 1c6v_A 85 GIEHTFGV 92 (164)
T ss_dssp TCEEECC-
T ss_pred CCeEeECC
Confidence 88876543
No 41
>3k4h_A Putative transcriptional regulator; structural genomics, protein structure INI NEW YORK structural genomix research consortium; HET: MAL; 2.80A {Bacillus cytotoxicus nvh 391-98}
Probab=36.15 E-value=46 Score=28.10 Aligned_cols=45 Identities=7% Similarity=0.020 Sum_probs=30.7
Q ss_pred HHHHHHHHHhCCCCEEEEcC-CCC-cchhhHHHHHHHHHHHcCcEEE
Q 018389 296 GGILAQRALADDIHDVVYTP-RKG-EKLEGKLQIVLQAIIDNGVNVK 340 (357)
Q Consensus 296 GkvLAeRakekGI~~VVFDp-R~G-ykYHGRVKAfADAaRE~GL~FK 340 (357)
|+.+|+.+.+.|-.+|+|=. ..+ .-...|.+.|.+++++.|+.+.
T Consensus 119 g~~a~~~L~~~G~~~i~~i~~~~~~~~~~~R~~gf~~~l~~~g~~~~ 165 (292)
T 3k4h_A 119 AREVAEYLISLGHKQIAFIGGGSDLLVTRDRLAGMSDALKLADIVLP 165 (292)
T ss_dssp HHHHHHHHHHTTCCCEEEEESCTTBHHHHHHHHHHHHHHHHTTCCCC
T ss_pred HHHHHHHHHHCCCceEEEEeCcccchhHHHHHHHHHHHHHHcCCCCC
Confidence 45555556667888876531 122 2345799999999999998754
No 42
>3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12}
Probab=36.04 E-value=69 Score=25.20 Aligned_cols=39 Identities=28% Similarity=0.461 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHHHhCCCCEEEEcCCCCcchhhHHHHHHHHHHHcCcEE
Q 018389 292 CAAVGGILAQRALADDIHDVVYTPRKGEKLEGKLQIVLQAIIDNGVNV 339 (357)
Q Consensus 292 Aa~VGkvLAeRakekGI~~VVFDpR~GykYHGRVKAfADAaRE~GL~F 339 (357)
+-.+|..||+.+.+.|+.-+++| ++- .+ ++.+++.|+.+
T Consensus 15 ~G~~G~~la~~L~~~g~~v~vid-~~~----~~----~~~~~~~g~~~ 53 (140)
T 3fwz_A 15 YGRVGSLLGEKLLASDIPLVVIE-TSR----TR----VDELRERGVRA 53 (140)
T ss_dssp CSHHHHHHHHHHHHTTCCEEEEE-SCH----HH----HHHHHHTTCEE
T ss_pred cCHHHHHHHHHHHHCCCCEEEEE-CCH----HH----HHHHHHcCCCE
Confidence 45799999999999999999999 553 23 34455567764
No 43
>3bbl_A Regulatory protein of LACI family; protein structure initiative II, PSI-II, NYSGXRC, transcript regulator, periplasmic binding protein; 2.35A {Chloroflexus aggregans}
Probab=35.78 E-value=41 Score=28.69 Aligned_cols=48 Identities=13% Similarity=0.119 Sum_probs=31.7
Q ss_pred CHHHHHHHHHHHHHHHHhCCCCEEEEc--CCCCcchhhHHHHHHHHHHHcCcEE
Q 018389 288 NATACAAVGGILAQRALADDIHDVVYT--PRKGEKLEGKLQIVLQAIIDNGVNV 339 (357)
Q Consensus 288 NveAAa~VGkvLAeRakekGI~~VVFD--pR~GykYHGRVKAfADAaRE~GL~F 339 (357)
|..++..+++.|++ .|-.+|.|= +....-...|...|.+++++.||.+
T Consensus 109 ~~~~g~~a~~~L~~----~G~~~I~~i~~~~~~~~~~~R~~Gf~~~l~~~g~~~ 158 (287)
T 3bbl_A 109 GTAGTRQAVEYLIG----RGHRRIAILAWPEDSRVGNDRLQGYLEAMQTAQLPI 158 (287)
T ss_dssp HHHHHHHHHHHHHH----HTCCCEEEEECCTTCHHHHHHHHHHHHHHHHTTCCC
T ss_pred cHHHHHHHHHHHHH----CCCCeEEEEeCCcccccHHHHHHHHHHHHHHcCCCC
Confidence 45565655555555 487777643 1122234589999999999999865
No 44
>2q28_A Oxalyl-COA decarboxylase; lyase, oxalate degradation, thiami diphosphate, lyase; HET: TPP ADP MES; 1.74A {Escherichia coli} PDB: 2q27_A* 2q29_A*
Probab=35.67 E-value=48 Score=32.41 Aligned_cols=43 Identities=9% Similarity=0.000 Sum_probs=34.9
Q ss_pred HHHHHHHHHHHhCCCCEEEEcCCCCcchhhHHHHHHHHHHHcCcEEEEE
Q 018389 294 AVGGILAQRALADDIHDVVYTPRKGEKLEGKLQIVLQAIIDNGVNVKVK 342 (357)
Q Consensus 294 ~VGkvLAeRakekGI~~VVFDpR~GykYHGRVKAfADAaRE~GL~FK~~ 342 (357)
.++..|++++.+.||+.|+-=| | +.+-.|++++.+.||.+.+-
T Consensus 9 ~~a~~l~~~L~~~GV~~vfg~P--G----~~~~~l~~al~~~~i~~i~~ 51 (564)
T 2q28_A 9 DGMHIIVEALKQNNIDTIYGVV--G----IPVTDMARHAQAEGIRYIGF 51 (564)
T ss_dssp EHHHHHHHHHHHTTCCEEEECC--C----TTTHHHHHHHHHTTCEEEEC
T ss_pred cHHHHHHHHHHHcCCCEEEECC--C----cchHHHHHHHHhCCCcEEee
Confidence 3789999999999999977664 6 67778899998888887653
No 45
>3dbi_A Sugar-binding transcriptional regulator, LACI FAM; structural genomics, sugar-binding transcriptional regulator structure initiative, PSI-2; HET: MSE; 2.45A {Escherichia coli K12}
Probab=35.34 E-value=48 Score=29.13 Aligned_cols=45 Identities=7% Similarity=0.099 Sum_probs=32.0
Q ss_pred HHHHHHHHHhCCCCEEEEc--CCCCcchhhHHHHHHHHHHHcCcEEE
Q 018389 296 GGILAQRALADDIHDVVYT--PRKGEKLEGKLQIVLQAIIDNGVNVK 340 (357)
Q Consensus 296 GkvLAeRakekGI~~VVFD--pR~GykYHGRVKAfADAaRE~GL~FK 340 (357)
|..+++.+.+.|-.+|.|= +....-...|...|.+++++.|+.+.
T Consensus 169 ~~~a~~~L~~~G~~~I~~i~~~~~~~~~~~R~~Gf~~al~~~g~~~~ 215 (338)
T 3dbi_A 169 SFNAVAELINAGHQEIAFLTGSMDSPTSIERLAGYKDALAQHGIALN 215 (338)
T ss_dssp HHHHHHHHHHTTCCSEEEECCCTTCHHHHHHHHHHHHHHHHTTCCCC
T ss_pred HHHHHHHHHHCCCCEEEEEeCCCCCccHHHHHHHHHHHHHHCCCCCC
Confidence 4555666677799888764 11222445899999999999998764
No 46
>2c31_A Oxalyl-COA decarboxylase; oxalate, thiamin diphosphate, flavoprotein, lyase, thiamine pyrophosphate; HET: TZD ADP; 1.73A {Oxalobacter formigenes} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 2ji6_A* 2ji7_A* 2ji8_A* 2ji9_A* 2jib_A*
Probab=35.33 E-value=49 Score=32.47 Aligned_cols=43 Identities=14% Similarity=0.030 Sum_probs=34.8
Q ss_pred HHHHHHHHHHHhCCCCEEEEcCCCCcchhhHHHHHHHHHHHcCcEEEEE
Q 018389 294 AVGGILAQRALADDIHDVVYTPRKGEKLEGKLQIVLQAIIDNGVNVKVK 342 (357)
Q Consensus 294 ~VGkvLAeRakekGI~~VVFDpR~GykYHGRVKAfADAaRE~GL~FK~~ 342 (357)
.++..|++++.+.||+.|+-=| | +.+-.|++++.+.||.+.+-
T Consensus 11 ~~a~~l~~~L~~~GV~~vfg~P--G----~~~~~l~~al~~~~i~~i~~ 53 (568)
T 2c31_A 11 DGFHVLIDALKMNDIDTMYGVV--G----IPITNLARMWQDDGQRFYSF 53 (568)
T ss_dssp EHHHHHHHHHHHTTCCEEEECC--C----TTTHHHHHHHHHTTCEEEEC
T ss_pred cHHHHHHHHHHHcCCCEEEEeC--C----CccHHHHHHHHhCCCcEEEe
Confidence 4789999999999999976663 6 67788999998888877553
No 47
>3tb6_A Arabinose metabolism transcriptional repressor; transcription regulation, arabinose binding, DNA binding Pro; HET: ARB; 2.21A {Bacillus subtilis}
Probab=35.17 E-value=44 Score=28.13 Aligned_cols=45 Identities=11% Similarity=0.027 Sum_probs=31.1
Q ss_pred HHHHHHHHHhCCCCEEEEc-CCCCcchhhHHHHHHHHHHHcCcEEE
Q 018389 296 GGILAQRALADDIHDVVYT-PRKGEKLEGKLQIVLQAIIDNGVNVK 340 (357)
Q Consensus 296 GkvLAeRakekGI~~VVFD-pR~GykYHGRVKAfADAaRE~GL~FK 340 (357)
|+.+++.+.+.|-.+|.|= .........|...|.+++++.|+.+.
T Consensus 125 ~~~a~~~L~~~G~~~i~~i~~~~~~~~~~R~~gf~~~l~~~g~~~~ 170 (298)
T 3tb6_A 125 GMMAAEHLLSLGHTHMMGIFKADDTQGVKRMNGFIQAHRERELFPS 170 (298)
T ss_dssp HHHHHHHHHHTTCCSEEEEEESSSHHHHHHHHHHHHHHHHTTCCCC
T ss_pred HHHHHHHHHHCCCCcEEEEcCCCCccHHHHHHHHHHHHHHcCCCCC
Confidence 5555666666788876532 12334556899999999999998753
No 48
>3snr_A Extracellular ligand-binding receptor; structural genomics, APC102214, PSI-biology, midwest center structural genomics, MCSG; HET: MSE TYR PHE; 1.49A {Rhodopseudomonas palustris} PDB: 3uk0_A* 3t23_A* 3ukj_A* 4eyo_A* 4eyq_A* 3tx6_A* 4f8j_A* 4fb4_A*
Probab=34.92 E-value=66 Score=27.75 Aligned_cols=46 Identities=11% Similarity=0.094 Sum_probs=31.0
Q ss_pred HHHHHHHHHHhCCCCEEEEcCCCCcchhhHHHHHHHHHHHcCcEEE
Q 018389 295 VGGILAQRALADDIHDVVYTPRKGEKLEGKLQIVLQAIIDNGVNVK 340 (357)
Q Consensus 295 VGkvLAeRakekGI~~VVFDpR~GykYHGRVKAfADAaRE~GL~FK 340 (357)
.|..+++.+.+.|..+|.+=.....--+++.+.|.+++++.|+.+-
T Consensus 122 ~~~~~~~~l~~~g~~~ia~i~~~~~~~~~~~~~~~~~l~~~g~~v~ 167 (362)
T 3snr_A 122 MGKVLYEHMKKNNVKTVGYIGYSDSYGDLWFNDLKKQGEAMGLKIV 167 (362)
T ss_dssp HHHHHHHHHHHTTCCEEEEEEESSHHHHHHHHHHHHHHHHTTCEEE
T ss_pred HHHHHHHHHHhcCCCEEEEEecCchHHHHHHHHHHHHHHHcCCEEE
Confidence 3444555566679998753211233346789999999999999753
No 49
>2hc5_A ORF 99, hypothetical protein YVYC; NESG, GFT-PSI, protein structure initiative, northeast structural genomics consortium, alpha-beta, FLAG; NMR {Bacillus subtilis} SCOP: d.352.1.1
Probab=34.63 E-value=46 Score=27.64 Aligned_cols=37 Identities=14% Similarity=0.207 Sum_probs=31.0
Q ss_pred ccccccCCCCCCeEEEEEecCCeEEEEEEeCCCCeEE
Q 018389 233 TFNQLTAPYHEPFCLDIYISKASVRACIVHRVTSKVV 269 (357)
Q Consensus 233 sf~qrTd~Y~rPfRL~VfrSNKHIYAQVIDD~~GkTL 269 (357)
..|.....+.+...+.|.....-++++|||..+|.||
T Consensus 46 ~lN~~~~~~n~~L~F~vdee~~~~vVkVvD~~TgEVI 82 (117)
T 2hc5_A 46 EMNKLLEPSQVHLKFELHDKLNEYYVKVIEDSTNEVI 82 (117)
T ss_dssp HHHHHHTTSSCCEEEEEEEETTEEEEEEEETTTTEEE
T ss_pred HHHHHHHhcCCceEEEEecCCCcEEEEEEECCCCcEE
Confidence 3455556667778899999999999999999999998
No 50
>3eyp_A Putative alpha-L-fucosidase; structural genomics, hydrolase, lipoprotein, PSI-2, protein initiative; 1.90A {Bacteroides thetaiotaomicron}
Probab=34.46 E-value=62 Score=32.20 Aligned_cols=48 Identities=17% Similarity=0.179 Sum_probs=35.9
Q ss_pred HHHHHHHHhCCCCEEEEcCC--CCc---------------chh----hHHHHHHHHHHHcCcEEEEEee
Q 018389 297 GILAQRALADDIHDVVYTPR--KGE---------------KLE----GKLQIVLQAIIDNGVNVKVKLK 344 (357)
Q Consensus 297 kvLAeRakekGI~~VVFDpR--~Gy---------------kYH----GRVKAfADAaRE~GL~FK~~lk 344 (357)
...|+.++++|..-||+..+ .|| .|. .-|+.|++|+|+.||.|.+++-
T Consensus 57 ~~w~~~~k~aGaky~v~takHHdGf~lw~S~~t~~~~~~~p~~~~k~Div~e~~~A~r~~Gl~~g~Y~s 125 (469)
T 3eyp_A 57 RQWMQTLKAAGIPAAILTAKHADGFCLWPSKYTDYSVKNAAWKNGKGDVVREFVDACEEYGLKAGIYLG 125 (469)
T ss_dssp HHHHHHHHHTTCCEEEEEEECTTCCBSSCCTTCSSBGGGSSGGGGTCCHHHHHHHHHHHHTCEEEEEEC
T ss_pred HHHHHHHHHcCCCEEEEEEEeCCCccccCCCCCCcccccCcccCCCCCHHHHHHHHHHHcCCeEEEEeC
Confidence 45788999999999885421 111 111 4599999999999999999885
No 51
>3d8u_A PURR transcriptional regulator; APC91343.1, vibrio parahaem RIMD 2210633, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.88A {Vibrio parahaemolyticus}
Probab=34.20 E-value=55 Score=27.36 Aligned_cols=45 Identities=18% Similarity=0.276 Sum_probs=30.0
Q ss_pred HHHHHHHHHhCCCCEEEEc-CCCCc-chhhHHHHHHHHHHHcCcEEE
Q 018389 296 GGILAQRALADDIHDVVYT-PRKGE-KLEGKLQIVLQAIIDNGVNVK 340 (357)
Q Consensus 296 GkvLAeRakekGI~~VVFD-pR~Gy-kYHGRVKAfADAaRE~GL~FK 340 (357)
|+.+++.+.+.|-..|.|= ...+. -...|++.|.+++++.|+.+.
T Consensus 108 ~~~a~~~L~~~G~~~i~~i~~~~~~~~~~~R~~gf~~~l~~~g~~~~ 154 (275)
T 3d8u_A 108 GKACTRHLIEQGFKNVGFIGARGNHSTLQRQLHGWQSAMIENYLTPD 154 (275)
T ss_dssp HHHHHHHHHTTTCCCEEEEECSCSSHHHHHHHHHHHHHHHHTTCCCC
T ss_pred HHHHHHHHHHCCCCeEEEEcCCCCCchHHHHHHHHHHHHHHcCCCCC
Confidence 4455555566788887643 11122 345799999999999998654
No 52
>4do4_A Alpha-N-acetylgalactosaminidase; pharmacological chaperone, (beta/alpha)8 barrel, glycosidase carbohydrate-binding protein, glycoprotein, lysosome; HET: NAG BMA MAN DJN CIT FUC; 1.40A {Homo sapiens} PDB: 3h54_A* 3h53_A* 3igu_A* 3h55_A* 4do5_A* 4do6_A* 1ktb_A* 1ktc_A*
Probab=34.06 E-value=80 Score=29.26 Aligned_cols=56 Identities=7% Similarity=-0.030 Sum_probs=39.5
Q ss_pred HHHHHHHHHHHHH-HHhCCCCEEEEcCCCCcch---hhH-----------HHHHHHHHHHcCcEEEEEeecc
Q 018389 290 TACAAVGGILAQR-ALADDIHDVVYTPRKGEKL---EGK-----------LQIVLQAIIDNGVNVKVKLKQR 346 (357)
Q Consensus 290 eAAa~VGkvLAeR-akekGI~~VVFDpR~GykY---HGR-----------VKAfADAaRE~GL~FK~~lkqr 346 (357)
+........|++. .++.|++-|+.| -+.+.- .|+ +++||+.+++.||+|.+..---
T Consensus 36 ~~i~~~ad~~~~~gl~~~Gy~yv~iD-dgW~~~rd~~G~~~~d~~rFP~G~k~ladyih~~Glk~Giy~~~~ 106 (400)
T 4do4_A 36 QLFMEMADRMAQDGWRDMGYTYLNID-DCWIGGRDASGRLMPDPKRFPHGIPFLADYVHSLGLKLGIYADMG 106 (400)
T ss_dssp HHHHHHHHHHHHSSHHHHTCCEEECC-SSCEEEECTTCCEEECTTTSTTCHHHHHHHHHHTTCEEEEEEEBS
T ss_pred HHHHHHHHHHHHCcchhhCCeEEEEC-CCcccCCCCCCCEeECcccCCcccHHHHHHHHHCCceEEEecCCC
Confidence 4445556666666 678899999988 233210 122 9999999999999999987543
No 53
>3o74_A Fructose transport system repressor FRUR; dual transcriptional regulator, DNA, transcription; 2.00A {Pseudomonas putida} PDB: 3o75_A*
Probab=34.01 E-value=83 Score=26.12 Aligned_cols=47 Identities=11% Similarity=-0.006 Sum_probs=33.4
Q ss_pred HHHHHHHHHHhCCCCEEEEc--CCCCcchhhHHHHHHHHHHHcCcEEEE
Q 018389 295 VGGILAQRALADDIHDVVYT--PRKGEKLEGKLQIVLQAIIDNGVNVKV 341 (357)
Q Consensus 295 VGkvLAeRakekGI~~VVFD--pR~GykYHGRVKAfADAaRE~GL~FK~ 341 (357)
.|+.+++.+.+.|-.+|.|= +....-...|...|.+++++.|+.+.+
T Consensus 107 ~~~~a~~~L~~~G~~~i~~i~~~~~~~~~~~R~~gf~~~l~~~~~~~~~ 155 (272)
T 3o74_A 107 ASRQLAASLLSSAPRSIALIGARPELSVSQARAGGFDEALQGYTGEVRR 155 (272)
T ss_dssp HHHHHHHHHHTTCCSEEEEEEECTTSHHHHHHHHHHHHHTTTCCSEEEE
T ss_pred HHHHHHHHHHHCCCcEEEEEecCCCCccHHHHHHHHHHHHHHcCCChhe
Confidence 35566677777898887643 122234558999999999999987644
No 54
>3rot_A ABC sugar transporter, periplasmic sugar binding; nysgrc, PSI-biology, structural genomics; 1.91A {Legionella pneumophila subsp}
Probab=33.95 E-value=78 Score=27.12 Aligned_cols=46 Identities=17% Similarity=0.152 Sum_probs=29.9
Q ss_pred HHHHHHHHHhCC--CCEEEEc--CCCCcchhhHHHHHHHHHHHcCcEEEE
Q 018389 296 GGILAQRALADD--IHDVVYT--PRKGEKLEGKLQIVLQAIIDNGVNVKV 341 (357)
Q Consensus 296 GkvLAeRakekG--I~~VVFD--pR~GykYHGRVKAfADAaRE~GL~FK~ 341 (357)
|+.+|+.+.+.| -..|+|= +.+..-...|.+.|.+++++.|+.+..
T Consensus 116 g~~a~~~l~~~g~~~~~i~~i~g~~~~~~~~~R~~Gf~~~l~~~g~~~~~ 165 (297)
T 3rot_A 116 GKKLGEKALELTPSAKRALVLNPQPGHIGLEKRAYGIKTILQDKGIFFEE 165 (297)
T ss_dssp HHHHHHHHHHHCTTCCEEEEEESCTTCHHHHHHHHHHHHHHHHTTCEEEE
T ss_pred HHHHHHHHHHhcCCCceEEEEeCCCCcHHHHHHHHHHHHHHHhcCCeEEE
Confidence 444455555556 6666543 122234448999999999999998753
No 55
>3ctp_A Periplasmic binding protein/LACI transcriptional; structural genomics, protein structure initiative; HET: XLF; 1.41A {Alkaliphilus metalliredigens}
Probab=33.52 E-value=58 Score=28.56 Aligned_cols=45 Identities=11% Similarity=0.141 Sum_probs=30.1
Q ss_pred HHHHHHHHHhCCCCEEEEc--CCCCcchhhHHHHHHHHHHHcCcEEE
Q 018389 296 GGILAQRALADDIHDVVYT--PRKGEKLEGKLQIVLQAIIDNGVNVK 340 (357)
Q Consensus 296 GkvLAeRakekGI~~VVFD--pR~GykYHGRVKAfADAaRE~GL~FK 340 (357)
|+.+++.+.+.|-.+|.|= +....-...|...|.+++++.|+.+.
T Consensus 160 ~~~a~~~L~~~G~~~I~~i~~~~~~~~~~~R~~Gf~~al~~~g~~~~ 206 (330)
T 3ctp_A 160 GRMAFDHLYEKGCRKILHIKGPEVFEATELRYKGFLDGARAKDLEID 206 (330)
T ss_dssp HHHHHHHHHHTTCCSEEEEECCTTCHHHHHHHHHHHHHHHHTTCCCE
T ss_pred HHHHHHHHHHCCCCeEEEEeCCccCccHHHHHHHHHHHHHHcCCCcc
Confidence 3444555556688887653 11222345899999999999999765
No 56
>3cc1_A BH1870 protein, putative alpha-N-acetylgalactosaminidase; structural genomic center for structural genomics, JCSG; HET: MSE PGE PG4 P33; 2.00A {Bacillus halodurans c-125}
Probab=33.46 E-value=74 Score=30.84 Aligned_cols=56 Identities=11% Similarity=0.076 Sum_probs=43.1
Q ss_pred CCHHHHHHHHHHHHHHHHhCCCCEEEEcCCCCcc----------------------------hhh-----HHHHHHHHHH
Q 018389 287 RNATACAAVGGILAQRALADDIHDVVYTPRKGEK----------------------------LEG-----KLQIVLQAII 333 (357)
Q Consensus 287 ~NveAAa~VGkvLAeRakekGI~~VVFDpR~Gyk----------------------------YHG-----RVKAfADAaR 333 (357)
-|-+........|++..++.|++-|+.| -+.+. +-+ =+++|++.++
T Consensus 26 i~e~~i~~~ad~~~~gl~~~G~~~~~iD-DgW~~~~~~~~~y~~~~~~~~d~~G~~~~~~~kFP~~~~~~Gl~~l~~~ih 104 (433)
T 3cc1_A 26 VTEEEVLGNAEYMANHLKKYGWEYIVVD-IQWYEPTANSSAYNPFAPLCMDEYGRLLPATNRFPSAKNGAGFKPLSDAIH 104 (433)
T ss_dssp CCHHHHHHHHHHHHHHTGGGTCCEEEEC-SCTTCCCTTSTTCCTTSCSCBCTTSCBCCCTTTCGGGTTTTTTHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhcchhhCCeEEEEC-CCcCCCCCcccccccccccccCCCCCEeECCccCCCcccCCCHHHHHHHHH
Confidence 4556666777777888899999999988 33222 112 3999999999
Q ss_pred HcCcEEEEEe
Q 018389 334 DNGVNVKVKL 343 (357)
Q Consensus 334 E~GL~FK~~l 343 (357)
+.||+|.+.+
T Consensus 105 ~~Glk~Giw~ 114 (433)
T 3cc1_A 105 DLGLKFGIHI 114 (433)
T ss_dssp HTTCEEEEEE
T ss_pred HcCCeeEEEe
Confidence 9999999987
No 57
>2nyt_A Probable C->U-editing enzyme apobec-2; cytidine deaminase, zinc-ION binding, hydrolase; 2.50A {Homo sapiens} PDB: 2rpz_A
Probab=33.09 E-value=58 Score=28.95 Aligned_cols=42 Identities=17% Similarity=0.278 Sum_probs=27.2
Q ss_pred HHHHHhC-----CCCEEEEcCCCCcchhhHHHHHHHHHHHcCcEEEE
Q 018389 300 AQRALAD-----DIHDVVYTPRKGEKLEGKLQIVLQAIIDNGVNVKV 341 (357)
Q Consensus 300 AeRakek-----GI~~VVFDpR~GykYHGRVKAfADAaRE~GL~FK~ 341 (357)
|+...++ ||..|||-.+.-+.-.-.+..-++.|+++||.+.+
T Consensus 98 a~aIi~al~~~~gI~rVV~~~~d~~~~~p~~~~g~~~L~~aGI~V~~ 144 (190)
T 2nyt_A 98 ADRIIKTLSKTKNLRLLILVGRLFMWEEPEIQAALKKLKEAGCKLRI 144 (190)
T ss_pred HHHHHHhhhhcCCccEEEEEeecCCcCChHHHHHHHHHHHCCCEEEE
Confidence 4455556 99999995221110012356677889999999886
No 58
>1owl_A Photolyase, deoxyribodipyrimidine photolyase; DNA repair, flavin enzyme, photoreactivating enzyme; HET: FAD; 1.80A {Synechococcus elongatus} SCOP: a.99.1.1 c.28.1.1 PDB: 1owm_A* 1own_A* 1owo_A* 1owp_A* 1qnf_A* 1tez_A*
Probab=32.97 E-value=83 Score=30.85 Aligned_cols=48 Identities=13% Similarity=0.012 Sum_probs=36.2
Q ss_pred HHHHHHHHHHhCCCCEEEEcCCCCcchhhHHHHHHHHHHHcCcEEEEE
Q 018389 295 VGGILAQRALADDIHDVVYTPRKGEKLEGKLQIVLQAIIDNGVNVKVK 342 (357)
Q Consensus 295 VGkvLAeRakekGI~~VVFDpR~GykYHGRVKAfADAaRE~GL~FK~~ 342 (357)
...+|.+-|.+.||..|+++..-+-.-.-+-+++++.+.+.||.|...
T Consensus 80 ~~~~l~~l~~~~~~~~v~~~~~~~p~~~~rd~~v~~~l~~~gi~~~~~ 127 (484)
T 1owl_A 80 PQHLIPQLAQQLQAEAVYWNQDIEPYGRDRDGQVAAALKTAGIRAVQL 127 (484)
T ss_dssp HHHHHHHHHHHTTCSEEEEECCCSHHHHHHHHHHHHHHHHTTCEEEEE
T ss_pred HHHHHHHHHHHcCCCEEEEeccCChhHHHHHHHHHHHHHHcCcEEEEe
Confidence 356677888899999999983233233477889999999999998653
No 59
>3hs3_A Ribose operon repressor; PSI-II, NYSGXRC, periplasmic binding protein, structural genomics, protein structure initiative; 1.60A {Lactobacillus acidophilus}
Probab=32.94 E-value=61 Score=27.55 Aligned_cols=46 Identities=9% Similarity=0.109 Sum_probs=32.7
Q ss_pred HHHHHHHHHhCCCCEEEEc--CCCCcchhhHHHHHHHHHHHcCcEEEEE
Q 018389 296 GGILAQRALADDIHDVVYT--PRKGEKLEGKLQIVLQAIIDNGVNVKVK 342 (357)
Q Consensus 296 GkvLAeRakekGI~~VVFD--pR~GykYHGRVKAfADAaRE~GL~FK~~ 342 (357)
|+.+++.+. .|-.+|.|= +....-...|...|.+++++.|+.+...
T Consensus 111 g~~a~~~L~-~G~~~I~~i~~~~~~~~~~~R~~Gf~~~l~~~g~~~~~~ 158 (277)
T 3hs3_A 111 GKESIKLLS-KKIEKVLIQHWPLSLPTIRERIEAMTAEASKLKIDYLLE 158 (277)
T ss_dssp HHHHHHTSC-TTCCEEEEEESCTTSHHHHHHHHHHHHHHHHTTCEEEEE
T ss_pred HHHHHHHHH-hCCCEEEEEeCCCcCccHHHHHHHHHHHHHHCCCCCCCC
Confidence 455555666 888888753 1222345589999999999999988653
No 60
>1y81_A Conserved hypothetical protein; hyperthermophIle, structural genomics, PSI, protein structure initiative; HET: COA; 1.70A {Pyrococcus furiosus} SCOP: c.2.1.8
Probab=32.74 E-value=49 Score=27.04 Aligned_cols=33 Identities=15% Similarity=0.305 Sum_probs=26.4
Q ss_pred HHHHhCCCCEEEEcCCCCcchhhHHHHHHHHHHHcCcEE
Q 018389 301 QRALADDIHDVVYTPRKGEKLEGKLQIVLQAIIDNGVNV 339 (357)
Q Consensus 301 eRakekGI~~VVFDpR~GykYHGRVKAfADAaRE~GL~F 339 (357)
+.|.++||..++.++ +++ -..+++.+++.|+.+
T Consensus 87 ~~~~~~g~~~i~~~~-~~~-----~~~l~~~a~~~Gi~~ 119 (138)
T 1y81_A 87 KEAVEAGFKKLWFQP-GAE-----SEEIRRFLEKAGVEY 119 (138)
T ss_dssp HHHHHTTCCEEEECT-TSC-----CHHHHHHHHHHTCEE
T ss_pred HHHHHcCCCEEEEcC-ccH-----HHHHHHHHHHCCCEE
Confidence 457889999999884 443 588999999999975
No 61
>3g1w_A Sugar ABC transporter; sugar-binding protein, bacillus halod target 11229F, transport protein, structural genomics; 2.02A {Bacillus halodurans c-125}
Probab=32.72 E-value=74 Score=27.12 Aligned_cols=48 Identities=8% Similarity=-0.080 Sum_probs=31.8
Q ss_pred HHHHHHHHHhC--CCCEEEEcC-CCCcchhhHHHHHHHHHHHcCcEEEEEe
Q 018389 296 GGILAQRALAD--DIHDVVYTP-RKGEKLEGKLQIVLQAIIDNGVNVKVKL 343 (357)
Q Consensus 296 GkvLAeRakek--GI~~VVFDp-R~GykYHGRVKAfADAaRE~GL~FK~~l 343 (357)
|+.+|+.+.+. |-.+|.|=. ....-...|..+|.+++++.|+.+.+..
T Consensus 113 g~~~~~~l~~~~~g~~~i~~i~~~~~~~~~~R~~gf~~~l~~~~~~~~~~~ 163 (305)
T 3g1w_A 113 GMNAAYKMAELLDGEGEVAVITLPNQLNHQERTTGFKETLEAEFPAIEVIA 163 (305)
T ss_dssp HHHHHHHHHHHTTTCEEEEEEECTTCHHHHHHHHHHHHHHHHHCTTEEEEE
T ss_pred HHHHHHHHHHHhCCCcEEEEEeCCCcccHHHHHHHHHHHHHhhCCCCEEEE
Confidence 44455555555 777776431 2223445799999999999999887653
No 62
>2o20_A Catabolite control protein A; CCPA, transcriptional regulator, helix-turn-helix, transcrip; 1.90A {Lactococcus lactis}
Probab=32.69 E-value=55 Score=28.73 Aligned_cols=45 Identities=7% Similarity=0.135 Sum_probs=30.1
Q ss_pred HHHHHHHHHhCCCCEEEEcC-C-CCcchhhHHHHHHHHHHHcCcEEE
Q 018389 296 GGILAQRALADDIHDVVYTP-R-KGEKLEGKLQIVLQAIIDNGVNVK 340 (357)
Q Consensus 296 GkvLAeRakekGI~~VVFDp-R-~GykYHGRVKAfADAaRE~GL~FK 340 (357)
|..+++.+.+.|-..|.|=. . ...-...|...|.+++++.||.+.
T Consensus 168 ~~~a~~~L~~~G~~~I~~i~~~~~~~~~~~R~~Gf~~al~~~g~~~~ 214 (332)
T 2o20_A 168 AYQSTKKLIDSGNKKIAYIMGSLKDVENTERMVGYQEALLEANIEFD 214 (332)
T ss_dssp HHHHHHHHHHTTCSSEEEECSCTTSHHHHHHHHHHHHHHHHTTCCCC
T ss_pred HHHHHHHHHHCCCCeEEEEeCCcccccHHHHHHHHHHHHHHcCCCCC
Confidence 44445555567988887641 1 112345799999999999998654
No 63
>3ff4_A Uncharacterized protein; structural genomics, PSI- protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Cytophaga hutchinsonii atcc 33406}
Probab=32.53 E-value=46 Score=27.14 Aligned_cols=34 Identities=15% Similarity=0.262 Sum_probs=26.4
Q ss_pred HHHHHhCCCCEEEEcCCCCcchhhHHHHHHHHHHHcCcEE
Q 018389 300 AQRALADDIHDVVYTPRKGEKLEGKLQIVLQAIIDNGVNV 339 (357)
Q Consensus 300 AeRakekGI~~VVFDpR~GykYHGRVKAfADAaRE~GL~F 339 (357)
.+.|.++|+..|+|. .|+. =..+++.+|++||.+
T Consensus 75 v~e~~~~g~k~v~~~--~G~~----~~e~~~~a~~~Girv 108 (122)
T 3ff4_A 75 YNYILSLKPKRVIFN--PGTE----NEELEEILSENGIEP 108 (122)
T ss_dssp HHHHHHHCCSEEEEC--TTCC----CHHHHHHHHHTTCEE
T ss_pred HHHHHhcCCCEEEEC--CCCC----hHHHHHHHHHcCCeE
Confidence 456778899988888 4653 268999999999975
No 64
>1qpz_A PURA, protein (purine nucleotide synthesis repressor); transcription regulation, DNA-binding, purine biosynthesis; HET: DNA HPA; 2.50A {Escherichia coli} SCOP: a.35.1.5 c.93.1.1 PDB: 1bdi_A* 1qp0_A* 1qp4_A* 1pnr_A* 1wet_A* 1zay_A* 1vpw_A* 2pue_A* 2puf_A* 2pug_A* 1bdh_A* 1qp7_A* 1qqa_A* 1qqb_A* 2puc_A* 2pua_A* 2pub_A* 2pud_A* 1jfs_A* 1jh9_A* ...
Probab=32.52 E-value=47 Score=29.27 Aligned_cols=49 Identities=12% Similarity=0.141 Sum_probs=31.8
Q ss_pred CHHHHHHHHHHHHHHHHhCCCCEEEEc--CCCCcchhhHHHHHHHHHHHcCcEEE
Q 018389 288 NATACAAVGGILAQRALADDIHDVVYT--PRKGEKLEGKLQIVLQAIIDNGVNVK 340 (357)
Q Consensus 288 NveAAa~VGkvLAeRakekGI~~VVFD--pR~GykYHGRVKAfADAaRE~GL~FK 340 (357)
|..++..+++ .+.+.|-.+|.|= +....-.+.|...|.+++++.|+.+.
T Consensus 161 ~~~~~~~a~~----~L~~~G~~~I~~i~g~~~~~~~~~R~~Gf~~al~~~g~~~~ 211 (340)
T 1qpz_A 161 AFEGGYMAGR----YLIERGHREIGVIPGPLERNTGAGRLAGFMKAMEEAMIKVP 211 (340)
T ss_dssp HHHHHHHHHH----HHHHHTCCCEEEECCCTTSHHHHHHHHHHHHHHHHTTCCCC
T ss_pred HHHHHHHHHH----HHHHCCCCEEEEEeCCCccccHHHHHHHHHHHHHHCCCCCC
Confidence 4455554444 4445588888754 11112345899999999999998753
No 65
>2rgy_A Transcriptional regulator, LACI family; 11011J, NYSGXRC, transctiptional regulator, SUG binding protein, structural genomics, PSI-2; 2.05A {Burkholderia phymatum}
Probab=32.34 E-value=47 Score=28.42 Aligned_cols=48 Identities=8% Similarity=0.123 Sum_probs=31.0
Q ss_pred CHHHHHHHHHHHHHHHHhCCCCEEEEc--CCCCcchhhHHHHHHHHHHHcCcEE
Q 018389 288 NATACAAVGGILAQRALADDIHDVVYT--PRKGEKLEGKLQIVLQAIIDNGVNV 339 (357)
Q Consensus 288 NveAAa~VGkvLAeRakekGI~~VVFD--pR~GykYHGRVKAfADAaRE~GL~F 339 (357)
|..++..+ ++.+.+.|-.+|.|= +....-...|.+.|.+++++.|+.+
T Consensus 112 ~~~~g~~a----~~~L~~~G~~~I~~i~~~~~~~~~~~R~~Gf~~al~~~g~~~ 161 (290)
T 2rgy_A 112 HRRGGELA----AATLIEHGHRKLAVISGPFTASDNVERLDGFFDELARHGIAR 161 (290)
T ss_dssp HHHHHHHH----HHHHHHTTCCSEEEEESCTTCHHHHHHHHHHHHHHHTTTCCG
T ss_pred cHHHHHHH----HHHHHHCCCceEEEEeCCCCCccHHHHHHHHHHHHHHcCCCC
Confidence 44554444 455555688877643 1122234579999999999999864
No 66
>2d59_A Hypothetical protein PH1109; COA binding, structural genomics; 1.65A {Pyrococcus horikoshii} SCOP: c.2.1.8 PDB: 2d5a_A* 2e6u_X* 3qa9_A 3q9n_A* 3q9u_A*
Probab=31.95 E-value=47 Score=27.14 Aligned_cols=34 Identities=9% Similarity=0.069 Sum_probs=26.5
Q ss_pred HHHHHhCCCCEEEEcCCCCcchhhHHHHHHHHHHHcCcEE
Q 018389 300 AQRALADDIHDVVYTPRKGEKLEGKLQIVLQAIIDNGVNV 339 (357)
Q Consensus 300 AeRakekGI~~VVFDpR~GykYHGRVKAfADAaRE~GL~F 339 (357)
++.|.++||..+++.+ +.. -..+++.+++.|+.+
T Consensus 94 v~~~~~~gi~~i~~~~-g~~-----~~~l~~~a~~~Gi~v 127 (144)
T 2d59_A 94 VEQAIKKGAKVVWFQY-NTY-----NREASKKADEAGLII 127 (144)
T ss_dssp HHHHHHHTCSEEEECT-TCC-----CHHHHHHHHHTTCEE
T ss_pred HHHHHHcCCCEEEECC-Cch-----HHHHHHHHHHcCCEE
Confidence 4678889999988873 332 578899999999975
No 67
>2h6r_A Triosephosphate isomerase; beta-alpha barrel; 2.30A {Methanocaldococcus jannaschii}
Probab=31.38 E-value=33 Score=30.15 Aligned_cols=49 Identities=16% Similarity=0.173 Sum_probs=38.3
Q ss_pred HHHHHHHHHhCCCCEEEEcCCCCcchhhHHHHHHHHHHHcCcEEEEEee
Q 018389 296 GGILAQRALADDIHDVVYTPRKGEKLEGKLQIVLQAIIDNGVNVKVKLK 344 (357)
Q Consensus 296 GkvLAeRakekGI~~VVFDpR~GykYHGRVKAfADAaRE~GL~FK~~lk 344 (357)
|++.+..|+++|+.-|......-.++.+.+..++..+++.||..-+-+-
T Consensus 71 Gei~~~~~~~~Gad~Vll~~ser~l~~~e~~~~~~~a~~~Gl~~iv~v~ 119 (219)
T 2h6r_A 71 GHILAEAIKDCGCKGTLINHSEKRMLLADIEAVINKCKNLGLETIVCTN 119 (219)
T ss_dssp TCCCHHHHHHHTCCEEEESBTTBCCBHHHHHHHHHHHHHHTCEEEEEES
T ss_pred CchHHHHHHHcCCCEEEECCccccCCHHHHHHHHHHHHHCCCeEEEEeC
Confidence 4555688999999999986322235668899999999999999888764
No 68
>3ues_A Alpha-1,3/4-fucosidase; TIM barrel, hydrolase-hydrolase inhibitor complex; HET: DFU; 1.60A {Bifidobacterium longum subsp} PDB: 3mo4_A* 3uet_A*
Probab=31.09 E-value=87 Score=31.39 Aligned_cols=48 Identities=17% Similarity=0.167 Sum_probs=36.3
Q ss_pred HHHHHHHHhCCCCEEEEcC--CCCc---------------ch----hhHHHHHHHHHHHcCcEEEEEee
Q 018389 297 GILAQRALADDIHDVVYTP--RKGE---------------KL----EGKLQIVLQAIIDNGVNVKVKLK 344 (357)
Q Consensus 297 kvLAeRakekGI~~VVFDp--R~Gy---------------kY----HGRVKAfADAaRE~GL~FK~~lk 344 (357)
...|+.++++|..-||+.. -.|| .+ ..-|+.|++|+|+.||.|.+++-
T Consensus 65 ~~W~~~~k~aGakyvvlt~kHHdGF~lw~S~~t~~~v~~~p~~~~krDiv~el~~A~r~~gl~~g~Y~S 133 (478)
T 3ues_A 65 DQWMDALVAGGMAGVILTCKHHDGFCLWPSRLTRHTVASSPWREGKGDLVREVSESARRHGLKFGVYLS 133 (478)
T ss_dssp HHHHHHHHHTTCSEEEEEEECTTCCBSSCCTTCSCBGGGSSGGGGTCCHHHHHHHHHHHTTCEEEEEEC
T ss_pred HHHHHHHHHcCCCEEEEeEEecCCccccCCCCCCcccccCCccCCCCCHHHHHHHHHHHcCCeEEEEeC
Confidence 4578899999999988542 1121 11 14699999999999999999975
No 69
>3h7a_A Short chain dehydrogenase; oxidoreductase, PSI-2, NYSGXRC, structural genomics, protein structure initiative; 1.87A {Rhodopseudomonas palustris}
Probab=30.74 E-value=73 Score=27.49 Aligned_cols=42 Identities=21% Similarity=0.290 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHHhCCCCEEEEcCCCCcchhhHHHHHHHHHHHcCcEE
Q 018389 293 AAVGGILAQRALADDIHDVVYTPRKGEKLEGKLQIVLQAIIDNGVNV 339 (357)
Q Consensus 293 a~VGkvLAeRakekGI~~VVFDpR~GykYHGRVKAfADAaRE~GL~F 339 (357)
.-||+.||+++.+.|..=++.+ |+. .+...+++.+++.|-.+
T Consensus 17 ~GIG~aia~~l~~~G~~V~~~~-r~~----~~~~~~~~~~~~~~~~~ 58 (252)
T 3h7a_A 17 DYIGAEIAKKFAAEGFTVFAGR-RNG----EKLAPLVAEIEAAGGRI 58 (252)
T ss_dssp SHHHHHHHHHHHHTTCEEEEEE-SSG----GGGHHHHHHHHHTTCEE
T ss_pred chHHHHHHHHHHHCCCEEEEEe-CCH----HHHHHHHHHHHhcCCeE
Confidence 4689999999999998766778 654 45556666666655443
No 70
>3qk7_A Transcriptional regulators; structural genomics, NEW YORK structural genomix research CO NYSGXRC, PSI-2, protein structur initiative; 2.70A {Yersinia pestis}
Probab=30.68 E-value=62 Score=27.80 Aligned_cols=45 Identities=13% Similarity=0.206 Sum_probs=30.8
Q ss_pred HHHHHHHHHhCCCCEEEEc--CCCCcchhhHHHHHHHHHHHcCcEEE
Q 018389 296 GGILAQRALADDIHDVVYT--PRKGEKLEGKLQIVLQAIIDNGVNVK 340 (357)
Q Consensus 296 GkvLAeRakekGI~~VVFD--pR~GykYHGRVKAfADAaRE~GL~FK 340 (357)
|+.+++.+.+.|-.+|.|= +....-...|.+.|.+++++.|+.+.
T Consensus 114 ~~~a~~~L~~~G~~~I~~i~~~~~~~~~~~R~~Gf~~al~~~g~~~~ 160 (294)
T 3qk7_A 114 ASLAVKRLLELGHQRIAFVSTDARISYVDQRLQGYVQTMSEAGLMPL 160 (294)
T ss_dssp HHHHHHHHHHTTCCCEEEEEESSCCHHHHHHHHHHHHHHHTTTCCCC
T ss_pred HHHHHHHHHHCCCceEEEEeCCcccchHHHHHHHHHHHHHHCCCCCC
Confidence 4455555666788887643 12223445899999999999998753
No 71
>3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, M structural genomics; 1.70A {Archaeoglobus fulgidus}
Probab=30.58 E-value=1.3e+02 Score=23.09 Aligned_cols=38 Identities=18% Similarity=0.226 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHhCCCCEEEEcCCCCcchhhHHHHHHHHHHHcCcEE
Q 018389 293 AAVGGILAQRALADDIHDVVYTPRKGEKLEGKLQIVLQAIIDNGVNV 339 (357)
Q Consensus 293 a~VGkvLAeRakekGI~~VVFDpR~GykYHGRVKAfADAaRE~GL~F 339 (357)
-.+|..||+.+.+.|..-+++| +.- .+ ++.+++.|+.+
T Consensus 15 G~iG~~la~~L~~~g~~V~~id-~~~----~~----~~~~~~~~~~~ 52 (141)
T 3llv_A 15 EAAGVGLVRELTAAGKKVLAVD-KSK----EK----IELLEDEGFDA 52 (141)
T ss_dssp SHHHHHHHHHHHHTTCCEEEEE-SCH----HH----HHHHHHTTCEE
T ss_pred CHHHHHHHHHHHHCCCeEEEEE-CCH----HH----HHHHHHCCCcE
Confidence 4589999999999999989999 543 23 34445566654
No 72
>1p5d_X PMM, phosphomannomutase; alpha/beta protein, phosphohexomutase, phosphoserine, enzyme complex, enzyme-metal complex, isomerase; HET: SEP G1P; 1.60A {Pseudomonas aeruginosa} SCOP: c.84.1.1 c.84.1.1 c.84.1.1 d.129.2.1 PDB: 1k35_A* 1p5g_X* 1pcj_X* 1pcm_X* 1k2y_X* 2h5a_X* 2h4l_X* 2fkf_A* 3rsm_A 3bkq_X* 3c04_A* 2fkm_X*
Probab=30.30 E-value=1.3e+02 Score=29.00 Aligned_cols=52 Identities=25% Similarity=0.331 Sum_probs=40.3
Q ss_pred CCCHHHHHHHHHHHHHHHHhCCCCEEE--EcCCCCcchhhH--HHHHHHHHHHcCcEEEE
Q 018389 286 TRNATACAAVGGILAQRALADDIHDVV--YTPRKGEKLEGK--LQIVLQAIIDNGVNVKV 341 (357)
Q Consensus 286 t~NveAAa~VGkvLAeRakekGI~~VV--FDpR~GykYHGR--VKAfADAaRE~GL~FK~ 341 (357)
.-+.+-+..||+.+|.-+.+.|-..|+ +|.| ++|. ..|++.+|..+|+++..
T Consensus 26 ~~t~~~~~~i~~a~~~~l~~~~~~~VvVG~D~R----~ss~~l~~a~~~gl~a~G~~V~~ 81 (463)
T 1p5d_X 26 TLTAETAYWIGRAIGSESLARGEPCVAVGRDGR----LSGPELVKQLIQGLVDCGCQVSD 81 (463)
T ss_dssp TBCHHHHHHHHHHHHHHHHHTTCCEEEEEECSC----TTHHHHHHHHHHHHHTBTCEEEE
T ss_pred CCCHHHHHHHHHHHHHHHHHcCCCeEEEEECCC----CCHHHHHHHHHHHHHHCCCEEEE
Confidence 457889999999999988887655555 8854 3454 57889999999998753
No 73
>3eya_A Pyruvate dehydrogenase [cytochrome]; pyruvate oxidase, membrane-associated flavoprotein dehydrogenase, interactions with lipids cell membrane; HET: TDP FAD; 2.50A {Escherichia coli} PDB: 3ey9_A*
Probab=30.30 E-value=67 Score=31.44 Aligned_cols=43 Identities=9% Similarity=0.095 Sum_probs=34.5
Q ss_pred HHHHHHHHHHHhCCCCEEEEcCCCCcchhhHHHHHHHHHHHc-CcEEEEE
Q 018389 294 AVGGILAQRALADDIHDVVYTPRKGEKLEGKLQIVLQAIIDN-GVNVKVK 342 (357)
Q Consensus 294 ~VGkvLAeRakekGI~~VVFDpR~GykYHGRVKAfADAaRE~-GL~FK~~ 342 (357)
.+|..|++++.+.||+.|+-=| | +++-.|++++.+. ||.+..-
T Consensus 4 ~~a~~l~~~L~~~GV~~vfg~P--G----~~~~~l~dal~~~~~i~~i~~ 47 (549)
T 3eya_A 4 TVAAYIAKTLESAGVKRIWGVT--G----DSLNGLSDSLNRMGTIEWMST 47 (549)
T ss_dssp BHHHHHHHHHHHTTCCEEEECC--C----GGGHHHHHHHHHHCSSEEEEC
T ss_pred cHHHHHHHHHHHCCCCEEEEcC--C----CchHHHHHHHHhcCCCeEEEe
Confidence 4789999999999999976653 6 6788889998876 7877553
No 74
>3sbx_A Putative uncharacterized protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: AMP; 2.50A {Mycobacterium marinum M}
Probab=30.28 E-value=54 Score=29.03 Aligned_cols=47 Identities=28% Similarity=0.286 Sum_probs=34.5
Q ss_pred HHHHHHHHHHHHHHHHhCCCCEEEEcCCCCcchhhHHHHHHHHHHHcC-cEEEEEee
Q 018389 289 ATACAAVGGILAQRALADDIHDVVYTPRKGEKLEGKLQIVLQAIIDNG-VNVKVKLK 344 (357)
Q Consensus 289 veAAa~VGkvLAeRakekGI~~VVFDpR~GykYHGRVKAfADAaRE~G-L~FK~~lk 344 (357)
.++|..+|+.||++ |+ .|++- +| .-|-..|.++++.++| ..+.|-..
T Consensus 30 ~~~A~~lg~~la~~----g~-~lv~G--GG--~~GlM~a~~~ga~~~GG~viGv~p~ 77 (189)
T 3sbx_A 30 LELAGAVGAAIAAR----GW-TLVWG--GG--HVSAMGAVSSAARAHGGWTVGVIPK 77 (189)
T ss_dssp HHHHHHHHHHHHHT----TC-EEEEC--CB--CSHHHHHHHHHHHTTTCCEEEEEET
T ss_pred HHHHHHHHHHHHHC----CC-EEEEC--CC--ccCHHHHHHHHHHHcCCcEEEEcCc
Confidence 47899999999975 54 46776 44 2499999999999876 45555443
No 75
>3brq_A HTH-type transcriptional regulator ASCG; transcriptional repressor structure escherichia coli, struct genomics, PSI-2; HET: FRU; 2.00A {Escherichia coli}
Probab=30.24 E-value=63 Score=27.13 Aligned_cols=45 Identities=7% Similarity=0.097 Sum_probs=30.0
Q ss_pred HHHHHHHHHhCCCCEEEEcC-CCCc-chhhHHHHHHHHHHHcCcEEE
Q 018389 296 GGILAQRALADDIHDVVYTP-RKGE-KLEGKLQIVLQAIIDNGVNVK 340 (357)
Q Consensus 296 GkvLAeRakekGI~~VVFDp-R~Gy-kYHGRVKAfADAaRE~GL~FK 340 (357)
|+.+++.+.+.|..+|.|=. ..+. -...|++.|.+++.+.|+.+.
T Consensus 127 ~~~a~~~l~~~G~~~I~~i~~~~~~~~~~~R~~gf~~~l~~~g~~~~ 173 (296)
T 3brq_A 127 SFNAVAELINAGHQEIAFLTGSMDSPTSIERLAGYKDALAQHGIALN 173 (296)
T ss_dssp HHHHHHHHHHTTCCSEEEECCCTTCHHHHHHHHHHHHHHHTTTCCCC
T ss_pred HHHHHHHHHHCCCceEEEEcCCCCCccHHHHHHHHHHHHHHcCCCCC
Confidence 44455555566888876541 1122 345799999999999998753
No 76
>3gbv_A Putative LACI-family transcriptional regulator; NYSGXRC, PSI-II, 11231J, structur genomics, protein structure initiative; 2.20A {Bacteroides fragilis}
Probab=30.19 E-value=66 Score=27.16 Aligned_cols=48 Identities=10% Similarity=0.020 Sum_probs=31.2
Q ss_pred HHHHHHHHHhCCC--CEEEEc------CCCCcchhhHHHHHHHHHHHcCcEEEEEe
Q 018389 296 GGILAQRALADDI--HDVVYT------PRKGEKLEGKLQIVLQAIIDNGVNVKVKL 343 (357)
Q Consensus 296 GkvLAeRakekGI--~~VVFD------pR~GykYHGRVKAfADAaRE~GL~FK~~l 343 (357)
|+.+|+.+.+.|- .+|.|= +.+......|++.|.+++++.|+.+.+..
T Consensus 121 g~~a~~~l~~~g~~~~~i~~i~~~~~g~~~~~~~~~R~~gf~~~l~~~g~~~~~~~ 176 (304)
T 3gbv_A 121 GYFAARMLMLLAVNDREIVIFRKIHEGVIGSNQQESREIGFRQYMQEHHPACNILE 176 (304)
T ss_dssp HHHHHHHHHHHSTTCSEEEEEEEEBTTBCCCHHHHHHHHHHHHHHHHHCTTSEEEE
T ss_pred HHHHHHHHHHHhCCCCeEEEEEecccCCccchhHHHHHHHHHHHHHhhCCCcEEEE
Confidence 4445555555565 666543 11223456899999999999999876543
No 77
>3egc_A Putative ribose operon repressor; structural genomics, unknown function, DNA-binding, transcri transcription regulation, PSI-2; 2.35A {Burkholderia thailandensis}
Probab=30.08 E-value=73 Score=27.03 Aligned_cols=45 Identities=11% Similarity=0.009 Sum_probs=31.6
Q ss_pred HHHHHHHHHhCCCCEEEEcC--CCCcchhhHHHHHHHHHHHcCcEEE
Q 018389 296 GGILAQRALADDIHDVVYTP--RKGEKLEGKLQIVLQAIIDNGVNVK 340 (357)
Q Consensus 296 GkvLAeRakekGI~~VVFDp--R~GykYHGRVKAfADAaRE~GL~FK 340 (357)
|+.+++.+.+.|-.+|.|=. ....-...|.+.|.+++++.|+.+.
T Consensus 113 g~~a~~~L~~~G~~~i~~i~~~~~~~~~~~R~~gf~~~l~~~g~~~~ 159 (291)
T 3egc_A 113 ARTAVEYLIARGHTRIGAIVGSAGLMTSRERLKGFRAAMSAAGLPVR 159 (291)
T ss_dssp HHHHHHHHHHTTCCSEEEECSCTTSHHHHHHHHHHHHHHHHTTCCCC
T ss_pred HHHHHHHHHHcCCCEEEEEeCCCCCcCHHHHHHHHHHHHHHcCCCCC
Confidence 45556666667988887541 1223455899999999999998764
No 78
>3uw2_A Phosphoglucomutase/phosphomannomutase family PROT; structural genomics, seattle structural genomics center for infectious disease; 1.95A {Burkholderia thailandensis}
Probab=30.04 E-value=1.4e+02 Score=29.42 Aligned_cols=53 Identities=23% Similarity=0.285 Sum_probs=40.7
Q ss_pred CCCCHHHHHHHHHHHHHHHHhCCCCEEE--EcCCCCcchhhH--HHHHHHHHHHcCcEEEE
Q 018389 285 STRNATACAAVGGILAQRALADDIHDVV--YTPRKGEKLEGK--LQIVLQAIIDNGVNVKV 341 (357)
Q Consensus 285 St~NveAAa~VGkvLAeRakekGI~~VV--FDpR~GykYHGR--VKAfADAaRE~GL~FK~ 341 (357)
..-+.+-+..||..+|.-+.+.|...|+ +|.| ++|. ..|++.+|..+|+++..
T Consensus 39 ~~lt~~~~~~ig~A~~~~l~~~~~~~VvVG~D~R----~ss~~~~~a~a~gl~a~Gi~V~~ 95 (485)
T 3uw2_A 39 KTLDADVARSIGRAFGSEVRAQGGDAVVVARDGR----LSGPELVGALADGLRAAGVDVVD 95 (485)
T ss_dssp TTBCHHHHHHHHHHHHHHHHHTTCCEEEEEECSC----TTHHHHHHHHHHHHHHTTCEEEE
T ss_pred CCCCHHHHHHHHHHHHHHHHHcCCCEEEEEECCC----cCHHHHHHHHHHHHHHCCCEEEE
Confidence 3457899999999999988877766665 7743 3344 56888999999998764
No 79
>3m0z_A Putative aldolase; MCSG, PSI-2, structural genomics, protein structure initiative, midwest center for structural genomics, lyase; HET: MSE; 1.20A {Klebsiella pneumoniae subsp} PDB: 3nzr_A 3lm7_A
Probab=29.74 E-value=1.1e+02 Score=29.02 Aligned_cols=46 Identities=13% Similarity=0.063 Sum_probs=38.9
Q ss_pred CCHHHHHHHHHHHHHHHHhCCCCEEEEcCCCCcchhhHHHHHHHHHHHcCcEE
Q 018389 287 RNATACAAVGGILAQRALADDIHDVVYTPRKGEKLEGKLQIVLQAIIDNGVNV 339 (357)
Q Consensus 287 ~NveAAa~VGkvLAeRakekGI~~VVFDpR~GykYHGRVKAfADAaRE~GL~F 339 (357)
..+++|. .-+++.|++.|-|=|=+|-.+-.-++|+|+++-++|+-|
T Consensus 145 V~vetAi-------aml~dmG~~SvKffPm~Gl~~l~E~~avAka~a~~g~~l 190 (249)
T 3m0z_A 145 VPLETAI-------ALLKDMGGSSIKYFPMGGLKHRAEFEAVAKACAAHDFWL 190 (249)
T ss_dssp EEHHHHH-------HHHHHTTCCEEEECCCTTTTTHHHHHHHHHHHHHTTCEE
T ss_pred eeHHHHH-------HHHHHcCCCeeeEeecCCcccHHHHHHHHHHHHHcCceE
Confidence 3566664 347899999999888899999999999999999999844
No 80
>2rjo_A Twin-arginine translocation pathway signal protei; PSI-2, NYSGXRC, twin arginine translocation pathway signal P structural genomics; HET: GAL; 2.05A {Burkholderia phytofirmans}
Probab=29.67 E-value=96 Score=27.10 Aligned_cols=51 Identities=10% Similarity=-0.073 Sum_probs=32.0
Q ss_pred CHHHHHHHHHHHHHHHHhCCCCEEEEc--CCCCcchhhHHHHHHHHHHHc-CcEEE
Q 018389 288 NATACAAVGGILAQRALADDIHDVVYT--PRKGEKLEGKLQIVLQAIIDN-GVNVK 340 (357)
Q Consensus 288 NveAAa~VGkvLAeRakekGI~~VVFD--pR~GykYHGRVKAfADAaRE~-GL~FK 340 (357)
|..++..+++.|++.+ .|-.+|.|= +.+..-...|++.|.+++++. ||.+.
T Consensus 118 ~~~~g~~a~~~L~~~~--~G~~~I~~i~g~~~~~~~~~R~~Gf~~al~~~pgi~~~ 171 (332)
T 2rjo_A 118 GVAYGEETATQLFKSM--GGKGGVVALGGIFSNVPAIERKAGLDAALKKFPGIQLL 171 (332)
T ss_dssp HHHHHHHHHHHHHHHT--TTCEEEEEEECCTTCHHHHHHHHHHHHHHHTCTTEEEE
T ss_pred hHHHHHHHHHHHHHHc--CCCCeEEEEECCCCCccHHHHHHHHHHHHHhCCCcEEE
Confidence 4455444444444321 587777653 112223468999999999999 99864
No 81
>1fob_A Beta-1,4-galactanase; B/A barrel, glycosyl hydrolase, family 53, CLAN GH-A; 1.80A {Aspergillus aculeatus} SCOP: c.1.8.3 PDB: 1fhl_A
Probab=29.63 E-value=82 Score=29.25 Aligned_cols=44 Identities=11% Similarity=0.107 Sum_probs=36.4
Q ss_pred HHHHHhCCCCEEEE----cCCCCcchhhHHHHHHHHHHHcCcEEEEEe
Q 018389 300 AQRALADDIHDVVY----TPRKGEKLEGKLQIVLQAIIDNGVNVKVKL 343 (357)
Q Consensus 300 AeRakekGI~~VVF----DpR~GykYHGRVKAfADAaRE~GL~FK~~l 343 (357)
-+.+++.|+..|.+ ||.+|+-.-.++..++..+++.||++-+.|
T Consensus 33 ~~ilk~~G~n~vRlri~v~P~~g~~d~~~~~~~~~~ak~~Gl~v~ld~ 80 (334)
T 1fob_A 33 ETILADAGINSIRQRVWVNPSDGSYDLDYNLELAKRVKAAGMSLYLDL 80 (334)
T ss_dssp HHHHHHHTCCEEEEEECSCCTTCTTCHHHHHHHHHHHHHTTCEEEEEE
T ss_pred HHHHHHcCCCEEEEEEEECCCCCccCHHHHHHHHHHHHHCCCEEEEEe
Confidence 45667789998876 466777777899999999999999999986
No 82
>3f4w_A Putative hexulose 6 phosphate synthase; humps, malonate, lyase; 1.65A {Salmonella typhimurium} SCOP: c.1.2.0
Probab=29.54 E-value=1.2e+02 Score=25.38 Aligned_cols=41 Identities=17% Similarity=0.037 Sum_probs=29.8
Q ss_pred HHHHHHhCCCCEEEEcCCCCcchhhHHHHHHHHHHHcCcEEEEE
Q 018389 299 LAQRALADDIHDVVYTPRKGEKLEGKLQIVLQAIIDNGVNVKVK 342 (357)
Q Consensus 299 LAeRakekGI~~VVFDpR~GykYHGRVKAfADAaRE~GL~FK~~ 342 (357)
+++.|.++|+..|++.... ....+..+.+.+++.|+.+.+.
T Consensus 69 ~~~~~~~~Gad~v~v~~~~---~~~~~~~~~~~~~~~g~~~~v~ 109 (211)
T 3f4w_A 69 ESQLLFDAGADYVTVLGVT---DVLTIQSCIRAAKEAGKQVVVD 109 (211)
T ss_dssp HHHHHHHTTCSEEEEETTS---CHHHHHHHHHHHHHHTCEEEEE
T ss_pred HHHHHHhcCCCEEEEeCCC---ChhHHHHHHHHHHHcCCeEEEE
Confidence 4788888888888776222 2355788888888888877764
No 83
>3huu_A Transcription regulator like protein; PSI-II, NYSGXRC, LAC I, STR genomics, protein structure initiative; 1.95A {Staphylococcus haemolyticus}
Probab=29.54 E-value=64 Score=27.77 Aligned_cols=46 Identities=11% Similarity=-0.067 Sum_probs=31.7
Q ss_pred HHHHHHHHHhCCCCEEEEc--CCCCcchhhHHHHHHHHHHHcCcEEEE
Q 018389 296 GGILAQRALADDIHDVVYT--PRKGEKLEGKLQIVLQAIIDNGVNVKV 341 (357)
Q Consensus 296 GkvLAeRakekGI~~VVFD--pR~GykYHGRVKAfADAaRE~GL~FK~ 341 (357)
|+.+++.+.+.|-..|.|= +........|...|.+++++.|+.+..
T Consensus 132 g~~a~~~L~~~G~~~I~~i~~~~~~~~~~~R~~Gf~~~l~~~g~~~~~ 179 (305)
T 3huu_A 132 AYQLTQYLYHLGHRHILFLQESGHYAVTEDRSVGFKQYCDDVKISNDC 179 (305)
T ss_dssp HHHHHHHHHHTTCCSEEEEEESSCBHHHHHHHHHHHHHHHHTTCCCCE
T ss_pred HHHHHHHHHHCCCCeEEEEcCCcccchhHHHHHHHHHHHHHcCCCccc
Confidence 4555666667788877643 122223457999999999999997653
No 84
>3lq1_A 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene- 1-carboxylate synthase; menaquinone biosynthesis, sephchc synthase, structural genomics; 2.60A {Listeria monocytogenes}
Probab=28.89 E-value=97 Score=30.59 Aligned_cols=47 Identities=4% Similarity=0.132 Sum_probs=37.5
Q ss_pred HHHHHHHHHHHHHHHhCCCCEEEEcCCCCcchhhHHHHHHHHHHHc-CcEEEEE
Q 018389 290 TACAAVGGILAQRALADDIHDVVYTPRKGEKLEGKLQIVLQAIIDN-GVNVKVK 342 (357)
Q Consensus 290 eAAa~VGkvLAeRakekGI~~VVFDpR~GykYHGRVKAfADAaRE~-GL~FK~~ 342 (357)
..-..++..|++.+.+.||+.|+-= .| |++-.|++++.+. ||.+.+-
T Consensus 8 ~~~~~~a~~lv~~L~~~GV~~vFg~--PG----~~~~~l~dal~~~~~i~~i~~ 55 (578)
T 3lq1_A 8 QVLTDYLAAFIEELVQAGVKEAIIS--PG----SRSTPLALMMAEHPILKIYVD 55 (578)
T ss_dssp HHHHHHHHHHHHHHHHTTCCEEEEC--CC----TTTHHHHHHHHHCSSCEEEEC
T ss_pred HHHHHHHHHHHHHHHHcCCCEEEEC--CC----CccHHHHHHHHhCCCceEEEe
Confidence 5567899999999999999996655 36 6778899999874 7877653
No 85
>3awd_A GOX2181, putative polyol dehydrogenase; oxidoreductase; 1.80A {Gluconobacter oxydans}
Probab=28.87 E-value=85 Score=26.38 Aligned_cols=41 Identities=5% Similarity=0.005 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHHHhCCCCEEEEcCCCCcchhhHHHHHHHHHHHcCc
Q 018389 292 CAAVGGILAQRALADDIHDVVYTPRKGEKLEGKLQIVLQAIIDNGV 337 (357)
Q Consensus 292 Aa~VGkvLAeRakekGI~~VVFDpR~GykYHGRVKAfADAaRE~GL 337 (357)
+.-||..||+++.+.|.+=++.+ |+. .+...+++.+++.|-
T Consensus 22 sggiG~~la~~l~~~G~~V~~~~-r~~----~~~~~~~~~l~~~~~ 62 (260)
T 3awd_A 22 AQNIGLACVTALAEAGARVIIAD-LDE----AMATKAVEDLRMEGH 62 (260)
T ss_dssp TSHHHHHHHHHHHHTTCEEEEEE-SCH----HHHHHHHHHHHHTTC
T ss_pred CchHHHHHHHHHHHCCCEEEEEe-CCH----HHHHHHHHHHHhcCC
Confidence 45799999999999998766688 654 345556666666553
No 86
>3iar_A Adenosine deaminase; purine metabolism structural genomics, structural genomics consortium, SGC, D mutation, hereditary hemolytic anemia, hydrolase; HET: 3D1; 1.52A {Homo sapiens} SCOP: c.1.9.1 PDB: 2bgn_E* 1w1i_E* 1qxl_A* 1krm_A* 1vfl_A 1ndv_A* 1ndy_A* 1ndz_A* 1o5r_A* 1uml_A* 1v79_A* 1v7a_A* 1ndw_A 1wxy_A* 1wxz_A* 2e1w_A* 2z7g_A* 2ada_A* 3mvi_A 1a4l_A* ...
Probab=28.74 E-value=1.2e+02 Score=29.12 Aligned_cols=56 Identities=16% Similarity=0.211 Sum_probs=41.8
Q ss_pred CHHHHHHHHHHHHHHHHhCCCC--EEEEcCCC----------------CcchhhHHHHHHHHHHH----cCcEEEEEe
Q 018389 288 NATACAAVGGILAQRALADDIH--DVVYTPRK----------------GEKLEGKLQIVLQAIID----NGVNVKVKL 343 (357)
Q Consensus 288 NveAAa~VGkvLAeRakekGI~--~VVFDpR~----------------GykYHGRVKAfADAaRE----~GL~FK~~l 343 (357)
+.++-..+..-.++++.+.||. ++-|+|.. |.-+..-|+++.+++++ .||.+++-+
T Consensus 72 ~~edl~~~a~e~~ed~a~dgV~Y~Eir~~P~~~~~~~~~~~~~~~~~~gl~~~~vv~~v~~~~~~a~~~~gi~~~lI~ 149 (367)
T 3iar_A 72 CREAIKRIAYEFVEMKAKEGVVYVEVRYSPHLLANSKVEPIPWNQAEGDLTPDEVVALVGQGLQEGERDFGVKARSIL 149 (367)
T ss_dssp CHHHHHHHHHHHHHHHHTTTEEEEEEEECGGGGCSSSCSSCGGGCCCCSCCHHHHHHHHHHHHHHHHHHHCCEEEEEE
T ss_pred CHHHHHHHHHHHHHHHHHcCCEEEEEEecHHHhhhccccccccccccCCCCHHHHHHHHHHHHHHHHHhcCCeEEEEE
Confidence 5688899999999999999987 56798732 56666677777776654 588775543
No 87
>4evq_A Putative ABC transporter subunit, substrate-bindi component; structural genomics, PSI-biology, midwest center for structu genomics; HET: MSE PHB; 1.40A {Rhodopseudomonas palustris} PDB: 4evr_A
Probab=28.64 E-value=94 Score=27.17 Aligned_cols=46 Identities=11% Similarity=0.042 Sum_probs=31.0
Q ss_pred HHHHHHHHHHhCCCCEEEEcCCCCcchhhHHHHHHHHHHHcCcEEE
Q 018389 295 VGGILAQRALADDIHDVVYTPRKGEKLEGKLQIVLQAIIDNGVNVK 340 (357)
Q Consensus 295 VGkvLAeRakekGI~~VVFDpR~GykYHGRVKAfADAaRE~GL~FK 340 (357)
.|..+++-+++.|..+|.+=.....--..+.+.|.+++.+.|+.+-
T Consensus 138 ~~~~~~~~l~~~g~~~ia~i~~~~~~~~~~~~~~~~~l~~~G~~v~ 183 (375)
T 4evq_A 138 IGRATGDAMIKAGLKKAVTVTWKYAAGEEMVSGFKKSFTAGKGEVV 183 (375)
T ss_dssp HHHHHHHHHHHTTCCEEEEEEESSHHHHHHHHHHHHHHHHTTCEEE
T ss_pred HHHHHHHHHHHcCCcEEEEEecCchHHHHHHHHHHHHHHHcCCeEE
Confidence 3445566666679998753211222345689999999999999863
No 88
>3miz_A Putative transcriptional regulator protein, LACI family; LACL family, protein structure initiative II (PSI II), NYSGXRC, structural genomics; 1.91A {Rhizobium etli}
Probab=28.57 E-value=57 Score=27.96 Aligned_cols=44 Identities=14% Similarity=0.037 Sum_probs=31.0
Q ss_pred HHHHHHHHHhCCCCEEEEc--CCCCcchhhHHHHHHHHHHHcCcEE
Q 018389 296 GGILAQRALADDIHDVVYT--PRKGEKLEGKLQIVLQAIIDNGVNV 339 (357)
Q Consensus 296 GkvLAeRakekGI~~VVFD--pR~GykYHGRVKAfADAaRE~GL~F 339 (357)
|+.+++.+.+.|-.+|.|= +....-.+.|...|.+++++.|+.+
T Consensus 119 g~~a~~~L~~~G~~~I~~i~~~~~~~~~~~R~~Gf~~al~~~g~~~ 164 (301)
T 3miz_A 119 ARDLTRYLLERGHRRIGYIRLNPILLGAELRLDAFRRTTSEFGLTE 164 (301)
T ss_dssp HHHHHHHHHTTTCCSEEEEECCTTSHHHHHHHHHHHHHHHHHTCCG
T ss_pred HHHHHHHHHHcCCCeEEEEecCccchhHHHHHHHHHHHHHHcCCCC
Confidence 5555666666898887653 1222244589999999999999865
No 89
>2fep_A Catabolite control protein A; CCPA, transcriptional regulator; HET: SEP; 2.45A {Bacillus subtilis} PDB: 2nzu_G* 1sxh_A 1sxi_A 1sxg_A* 2nzv_G* 2oen_G*
Probab=28.55 E-value=64 Score=27.61 Aligned_cols=45 Identities=11% Similarity=0.022 Sum_probs=29.5
Q ss_pred HHHHHHHHHhCCCCEEEEcC-CC-Cc-chhhHHHHHHHHHHHcCcEEE
Q 018389 296 GGILAQRALADDIHDVVYTP-RK-GE-KLEGKLQIVLQAIIDNGVNVK 340 (357)
Q Consensus 296 GkvLAeRakekGI~~VVFDp-R~-Gy-kYHGRVKAfADAaRE~GL~FK 340 (357)
|+.+++.+.+.|-.+|.|=. .. +. -...|...|.+++++.|+.+.
T Consensus 121 g~~a~~~L~~~G~~~I~~i~~~~~~~~~~~~R~~Gf~~al~~~g~~~~ 168 (289)
T 2fep_A 121 IYDAVKLLVDKGHTDIAFVSGPMAEPINRSKKLQGYKRALEEANLPFN 168 (289)
T ss_dssp HHHHHHHHHHTTCSSEEEEESCTTSHHHHTTHHHHHHHHHHHTTCCCC
T ss_pred HHHHHHHHHHCCCCeEEEEeCCccccccHHHHHHHHHHHHHHcCCCCC
Confidence 34444555556888876531 11 22 245799999999999998653
No 90
>3lyl_A 3-oxoacyl-(acyl-carrier-protein) reductase; alpha and beta protein, NAD(P)-binding rossmann fold, csgid, oxidoreductase; 1.95A {Francisella tularensis subsp} SCOP: c.2.1.2
Probab=28.45 E-value=85 Score=26.40 Aligned_cols=42 Identities=10% Similarity=0.075 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHHhCCCCEEEEcCCCCcchhhHHHHHHHHHHHcCcEE
Q 018389 293 AAVGGILAQRALADDIHDVVYTPRKGEKLEGKLQIVLQAIIDNGVNV 339 (357)
Q Consensus 293 a~VGkvLAeRakekGI~~VVFDpR~GykYHGRVKAfADAaRE~GL~F 339 (357)
.-||..||+++.+.|..-++.+ |+. .+...+++.+++.|..+
T Consensus 15 ~gIG~~~a~~l~~~G~~v~~~~-r~~----~~~~~~~~~~~~~~~~~ 56 (247)
T 3lyl_A 15 RGIGFEVAHALASKGATVVGTA-TSQ----ASAEKFENSMKEKGFKA 56 (247)
T ss_dssp SHHHHHHHHHHHHTTCEEEEEE-SSH----HHHHHHHHHHHHTTCCE
T ss_pred ChHHHHHHHHHHHCCCEEEEEe-CCH----HHHHHHHHHHHhcCCce
Confidence 4689999999999998766677 553 56677777777776544
No 91
>4fn4_A Short chain dehydrogenase; NADH-binding, rossmann fold, oxidoreductase; HET: NAD; 1.75A {Sulfolobus acidocaldarius}
Probab=28.31 E-value=79 Score=28.53 Aligned_cols=44 Identities=20% Similarity=0.248 Sum_probs=35.9
Q ss_pred HHHHHHHHHHHHHHhCCCCEEEEcCCCCcchhhHHHHHHHHHHHcCcEE
Q 018389 291 ACAAVGGILAQRALADDIHDVVYTPRKGEKLEGKLQIVLQAIIDNGVNV 339 (357)
Q Consensus 291 AAa~VGkvLAeRakekGI~~VVFDpR~GykYHGRVKAfADAaRE~GL~F 339 (357)
++.=||+.+|+++.+.|-.=|+.| |+. .+++.+++.+++.|-+.
T Consensus 15 as~GIG~aiA~~la~~Ga~Vv~~~-~~~----~~~~~~~~~i~~~g~~~ 58 (254)
T 4fn4_A 15 AGSGIGRAIAKKFALNDSIVVAVE-LLE----DRLNQIVQELRGMGKEV 58 (254)
T ss_dssp TTSHHHHHHHHHHHHTTCEEEEEE-SCH----HHHHHHHHHHHHTTCCE
T ss_pred CCCHHHHHHHHHHHHcCCEEEEEE-CCH----HHHHHHHHHHHhcCCcE
Confidence 345699999999999999878888 654 67888999999888654
No 92
>3rkr_A Short chain oxidoreductase; rossmann fold; HET: NAP; 2.42A {Uncultured bacterium BIO5}
Probab=28.14 E-value=1e+02 Score=26.53 Aligned_cols=44 Identities=20% Similarity=0.262 Sum_probs=33.1
Q ss_pred HHHHHHHHHHHHHhCCCCEEEEcCCCCcchhhHHHHHHHHHHHcCcEEE
Q 018389 292 CAAVGGILAQRALADDIHDVVYTPRKGEKLEGKLQIVLQAIIDNGVNVK 340 (357)
Q Consensus 292 Aa~VGkvLAeRakekGI~~VVFDpR~GykYHGRVKAfADAaRE~GL~FK 340 (357)
+.-||..||+++.+.|..=++.+ |+. .+...+++.+.+.|-.+.
T Consensus 38 s~gIG~~la~~l~~~G~~V~~~~-r~~----~~~~~~~~~~~~~~~~~~ 81 (262)
T 3rkr_A 38 SRGIGAAIARKLGSLGARVVLTA-RDV----EKLRAVEREIVAAGGEAE 81 (262)
T ss_dssp TSHHHHHHHHHHHHTTCEEEEEE-SCH----HHHHHHHHHHHHTTCEEE
T ss_pred CChHHHHHHHHHHHCCCEEEEEE-CCH----HHHHHHHHHHHHhCCcee
Confidence 35699999999999998866677 654 566777777777765543
No 93
>3tfo_A Putative 3-oxoacyl-(acyl-carrier-protein) reducta; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.08A {Sinorhizobium meliloti}
Probab=28.09 E-value=95 Score=27.31 Aligned_cols=44 Identities=14% Similarity=0.200 Sum_probs=33.6
Q ss_pred HHHHHHHHHHHHHhCCCCEEEEcCCCCcchhhHHHHHHHHHHHcCcEEE
Q 018389 292 CAAVGGILAQRALADDIHDVVYTPRKGEKLEGKLQIVLQAIIDNGVNVK 340 (357)
Q Consensus 292 Aa~VGkvLAeRakekGI~~VVFDpR~GykYHGRVKAfADAaRE~GL~FK 340 (357)
+.-||+.||+++.+.|..=++.+ |+. .++..+++.+++.|-.+.
T Consensus 13 s~GIG~aia~~la~~G~~V~~~~-r~~----~~~~~~~~~l~~~~~~~~ 56 (264)
T 3tfo_A 13 SGGIGEGIARELGVAGAKILLGA-RRQ----ARIEAIATEIRDAGGTAL 56 (264)
T ss_dssp TSHHHHHHHHHHHHTTCEEEEEE-SSH----HHHHHHHHHHHHTTCEEE
T ss_pred ccHHHHHHHHHHHHCCCEEEEEE-CCH----HHHHHHHHHHHhcCCcEE
Confidence 45799999999999998766777 654 567778888877765443
No 94
>1ovm_A Indole-3-pyruvate decarboxylase; thiamine diphosphate, indole-3-acetic acid, TDP dependent enzyme, lyase; HET: TPP; 2.65A {Enterobacter cloacae} SCOP: c.31.1.3 c.36.1.5 c.36.1.9
Probab=27.69 E-value=88 Score=30.43 Aligned_cols=43 Identities=19% Similarity=0.140 Sum_probs=34.2
Q ss_pred HHHHHHHHHHHhCCCCEEEEcCCCCcchhhHHHHHHHHHHHc-CcEEEEE
Q 018389 294 AVGGILAQRALADDIHDVVYTPRKGEKLEGKLQIVLQAIIDN-GVNVKVK 342 (357)
Q Consensus 294 ~VGkvLAeRakekGI~~VVFDpR~GykYHGRVKAfADAaRE~-GL~FK~~ 342 (357)
.+++.|++.+.+.||+.|+-=| | +.+-.|++++.+. ||.+..-
T Consensus 6 ~~a~~l~~~L~~~GV~~vfg~P--G----~~~~~l~~al~~~~~i~~i~~ 49 (552)
T 1ovm_A 6 CVADYLLDRLTDCGADHLFGVP--G----DYNLQFLDHVIDSPDICWVGC 49 (552)
T ss_dssp BHHHHHHHHHHHTTCCEEEECC--C----GGGHHHHHHHHHCSSCEEEEC
T ss_pred CHHHHHHHHHHHcCCCEEEECC--C----hhHHHHHHHHhcCCCceEEee
Confidence 4689999999999999976653 6 6778899999875 6877553
No 95
>3sju_A Keto reductase; short-chain dehydrogenase, oxidoreductase; HET: NDP; 2.40A {Streptomyces griseoruber}
Probab=27.61 E-value=77 Score=27.77 Aligned_cols=44 Identities=16% Similarity=0.213 Sum_probs=33.1
Q ss_pred HHHHHHHHHHHHHhCCCCEEEEcCCCCcchhhHHHHHHHHHHHcCcEEE
Q 018389 292 CAAVGGILAQRALADDIHDVVYTPRKGEKLEGKLQIVLQAIIDNGVNVK 340 (357)
Q Consensus 292 Aa~VGkvLAeRakekGI~~VVFDpR~GykYHGRVKAfADAaRE~GL~FK 340 (357)
+.-||+.||+++.+.|..=++.+ |.. .++..+++.+++.|..+.
T Consensus 33 s~GIG~aia~~la~~G~~V~~~~-r~~----~~~~~~~~~l~~~~~~~~ 76 (279)
T 3sju_A 33 SSGIGLAVARTLAARGIAVYGCA-RDA----KNVSAAVDGLRAAGHDVD 76 (279)
T ss_dssp TSHHHHHHHHHHHHTTCEEEEEE-SCH----HHHHHHHHHHHTTTCCEE
T ss_pred CCHHHHHHHHHHHHCCCEEEEEe-CCH----HHHHHHHHHHHhcCCcEE
Confidence 34699999999999998866678 553 567777777777665443
No 96
>3ksm_A ABC-type sugar transport system, periplasmic COMP; periplasmic component, PSI- 11023L, structural genomics, protein structure initiative; HET: BDR; 1.90A {Hahella chejuensis}
Probab=27.47 E-value=80 Score=26.21 Aligned_cols=53 Identities=9% Similarity=0.040 Sum_probs=34.9
Q ss_pred CHHHHHHHHHHHHHHHHhCCCCEEEEcC--CCCcchhhHHHHHHHHHHHc-CcEEE
Q 018389 288 NATACAAVGGILAQRALADDIHDVVYTP--RKGEKLEGKLQIVLQAIIDN-GVNVK 340 (357)
Q Consensus 288 NveAAa~VGkvLAeRakekGI~~VVFDp--R~GykYHGRVKAfADAaRE~-GL~FK 340 (357)
+..++..+++.|++++.+.|-.+|.|=. .+..-...|...|.+++++. |+.+.
T Consensus 107 ~~~~g~~~~~~l~~~~~~~G~~~i~~i~~~~~~~~~~~R~~gf~~~l~~~~~~~~~ 162 (276)
T 3ksm_A 107 NYAAGQLAARALLATLDLSKERNIALLRLRAGNASTDQREQGFLDVLRKHDKIRII 162 (276)
T ss_dssp HHHHHHHHHHHHHHHSCTTSCEEEEECBCCTTCHHHHHHHHHHHHHHTTCTTEEEE
T ss_pred HHHHHHHHHHHHHHhcCcCCCceEEEEEcCCCchhHHHHHHHHHHHHHhCCCcEEE
Confidence 4455555555555554333888887641 12224458999999999998 98875
No 97
>1uas_A Alpha-galactosidase; TIM-barrel, beta-alpha-barrel, greek KEY motif, hydrolase; HET: GLA; 1.50A {Oryza sativa} SCOP: b.71.1.1 c.1.8.1
Probab=27.24 E-value=75 Score=29.74 Aligned_cols=57 Identities=7% Similarity=0.021 Sum_probs=38.8
Q ss_pred CCHHHHHHHHHHHHHH-HHhCCCCEEEEcCCCCcc---------------hhhHHHHHHHHHHHcCcEEEEEee
Q 018389 287 RNATACAAVGGILAQR-ALADDIHDVVYTPRKGEK---------------LEGKLQIVLQAIIDNGVNVKVKLK 344 (357)
Q Consensus 287 ~NveAAa~VGkvLAeR-akekGI~~VVFDpR~Gyk---------------YHGRVKAfADAaRE~GL~FK~~lk 344 (357)
.|-+........+++. +.+.|++-|+.| -+.+. +-.-+++|++.+++.||+|.+.+-
T Consensus 23 ~~e~~i~~~ad~~~~~gl~~~G~~~v~iD-dgW~~~~rd~~G~~~~~~~~FP~Gl~~l~~~ih~~Glk~Giw~~ 95 (362)
T 1uas_A 23 INEQIIRETADALVNTGLAKLGYQYVNID-DCWAEYSRDSQGNFVPNRQTFPSGIKALADYVHAKGLKLGIYSD 95 (362)
T ss_dssp CCHHHHHHHHHHHHHTSHHHHTCCEEECC-SSCBCSSCCTTSCCCBCTTTCTTCHHHHHHHHHHTTCEEEEEEE
T ss_pred CCHHHHHHHHHHHHHcCchhcCCcEEEEC-CCcCCCCCCCCCCeeEChhccCccHHHHHHHHHHCCCEeEEEee
Confidence 3444444444444333 367899999988 34332 212399999999999999998874
No 98
>1np7_A DNA photolyase; protein with FAD cofactor; HET: DNA FAD; 1.90A {Synechocystis SP} SCOP: a.99.1.1 c.28.1.1
Probab=27.23 E-value=74 Score=31.09 Aligned_cols=45 Identities=13% Similarity=0.121 Sum_probs=34.9
Q ss_pred HHHHHHHHHhCCCCEEEEcCCCCcch-hhHHHHHHHHHHHcCcEEEE
Q 018389 296 GGILAQRALADDIHDVVYTPRKGEKL-EGKLQIVLQAIIDNGVNVKV 341 (357)
Q Consensus 296 GkvLAeRakekGI~~VVFDpR~GykY-HGRVKAfADAaRE~GL~FK~ 341 (357)
..+|.+-|.+.||..|+++ +.-..| .-+.+++++.+.+.||.+..
T Consensus 89 ~~~l~~l~~~~~~~~V~~~-~~~~~~~~~rd~~v~~~l~~~gi~~~~ 134 (489)
T 1np7_A 89 EQVIPQIAKQINAKTIYYH-REVTQEELDVERNLVKQLTILGIEAKG 134 (489)
T ss_dssp HHHHHHHHHHTTEEEEEEE-CCCSHHHHHHHHHHHHHHHHHTCEEEE
T ss_pred HHHHHHHHHHcCCCEEEEe-cccCHHHHHHHHHHHHHHHhcCCeEEE
Confidence 3567778889999999999 333333 36788999999999998875
No 99
>2h3h_A Sugar ABC transporter, periplasmic sugar-binding protein; glucose binding protein, periplasmic binding protein, GBP; HET: BGC; 1.70A {Thermotoga maritima} PDB: 2qvc_A* 3c6q_B*
Probab=27.13 E-value=84 Score=27.14 Aligned_cols=51 Identities=20% Similarity=0.122 Sum_probs=33.1
Q ss_pred CHHHHHHHHHHHHHHHHhCCCCEEEEc--CCCCcchhhHHHHHHHHHHHcCcEEE
Q 018389 288 NATACAAVGGILAQRALADDIHDVVYT--PRKGEKLEGKLQIVLQAIIDNGVNVK 340 (357)
Q Consensus 288 NveAAa~VGkvLAeRakekGI~~VVFD--pR~GykYHGRVKAfADAaRE~GL~FK 340 (357)
|..++..+++.|++++ .|-.+|.|= +.+..-...|...|.+++++.|+.+.
T Consensus 105 ~~~~g~~a~~~L~~~~--~G~~~I~~i~~~~~~~~~~~R~~gf~~~l~~~g~~~~ 157 (313)
T 2h3h_A 105 NYQAGYTAGLIMKELL--GGKGKVVIGTGSLTAMNSLQRIQGFKDAIKDSEIEIV 157 (313)
T ss_dssp HHHHHHHHHHHHHHHH--TSCSEEEEEESCSSCHHHHHHHHHHHHHHTTSSCEEE
T ss_pred HHHHHHHHHHHHHHHc--CCCCEEEEEECCCCCccHHHHHHHHHHHhcCCCCEEE
Confidence 4556666666655543 277777643 11222345899999999999999764
No 100
>3k9c_A Transcriptional regulator, LACI family protein; PSI-II, 11026W, structural genomics, PR structure initiative; 2.14A {Rhodococcus jostii}
Probab=26.86 E-value=1.2e+02 Score=26.00 Aligned_cols=46 Identities=7% Similarity=-0.017 Sum_probs=31.6
Q ss_pred HHHHHHHHHhCCCCEEEEcC-CCCcchhhHHHHHHHHHHHcCcEEEE
Q 018389 296 GGILAQRALADDIHDVVYTP-RKGEKLEGKLQIVLQAIIDNGVNVKV 341 (357)
Q Consensus 296 GkvLAeRakekGI~~VVFDp-R~GykYHGRVKAfADAaRE~GL~FK~ 341 (357)
|+.+++.+.+.|-.+|.|=. ..+.-...|.+.|.+++++.|+.+..
T Consensus 114 ~~~a~~~L~~~G~~~I~~i~~~~~~~~~~R~~Gf~~al~~~g~~~~~ 160 (289)
T 3k9c_A 114 ITLAVDHLTELGHRNIAHIDGADAPGGADRRAGFLAAMDRHGLSASA 160 (289)
T ss_dssp HHHHHHHHHHTTCCSEEEECCTTSTTHHHHHHHHHHHHHHTTCGGGE
T ss_pred HHHHHHHHHHCCCCcEEEEeCCCCccHHHHHHHHHHHHHHCCCCCCc
Confidence 44455555567988876541 22334568999999999999997543
No 101
>3hut_A Putative branched-chain amino acid ABC transporter; extracellular ligand-binding receptor,transport protein; 1.93A {Rhodospirillum rubrum atcc 11170}
Probab=26.58 E-value=90 Score=27.18 Aligned_cols=46 Identities=20% Similarity=0.027 Sum_probs=30.6
Q ss_pred HHHHHHHHHhCCCCEEEEcCCCCcchhhHHHHHHHHHHHcCcEEEE
Q 018389 296 GGILAQRALADDIHDVVYTPRKGEKLEGKLQIVLQAIIDNGVNVKV 341 (357)
Q Consensus 296 GkvLAeRakekGI~~VVFDpR~GykYHGRVKAfADAaRE~GL~FK~ 341 (357)
|..+++-+++.|...|.+=-....--..+.+.|.+++++.|+.+-.
T Consensus 127 ~~~~~~~l~~~g~~~ia~i~~~~~~~~~~~~~~~~~l~~~g~~v~~ 172 (358)
T 3hut_A 127 GPNNAAWMIGDGFTSVAVIGVTTDWGLSSAQAFRKAFELRGGAVVV 172 (358)
T ss_dssp HHHHHHHHHHTTCCEEEEEEESSHHHHHHHHHHHHHHHHTTCEEEE
T ss_pred HHHHHHHHHHcCCCEEEEEecCcHHHHHHHHHHHHHHHHcCCEEEE
Confidence 3445555566698887532112333457899999999999998753
No 102
>3sg0_A Extracellular ligand-binding receptor; structural genomics, PSI-biology; HET: 173; 1.20A {Rhodopseudomonas palustris} PDB: 4dqd_A*
Probab=26.55 E-value=98 Score=26.99 Aligned_cols=45 Identities=13% Similarity=0.126 Sum_probs=30.1
Q ss_pred HHHHHHHHHHhCCCCEEEEcCCCCcchhhHHHHHHHHHHHcCcEE
Q 018389 295 VGGILAQRALADDIHDVVYTPRKGEKLEGKLQIVLQAIIDNGVNV 339 (357)
Q Consensus 295 VGkvLAeRakekGI~~VVFDpR~GykYHGRVKAfADAaRE~GL~F 339 (357)
.|+.+++-+++.|..+|.+=..+..--.++...|.+++++.|+++
T Consensus 146 ~~~~~~~~l~~~g~~~ia~i~~~~~~~~~~~~~~~~~l~~~g~~v 190 (386)
T 3sg0_A 146 MAEAIGKYIAKTGAKKVGYIGFSDAYGEGYYKVLAAAAPKLGFEL 190 (386)
T ss_dssp HHHHHHHHHHHTTCCEEEEEEESSHHHHHHHHHHHHHHHHHTCEE
T ss_pred HHHHHHHHHHhcCCCEEEEEecCchHHHHHHHHHHHHHHHcCCEE
Confidence 344445555667999875321123334578999999999999976
No 103
>3tjr_A Short chain dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, SCD, NAD; HET: UNL; 1.60A {Mycobacterium avium subsp}
Probab=26.43 E-value=91 Score=27.69 Aligned_cols=45 Identities=11% Similarity=0.125 Sum_probs=33.5
Q ss_pred HHHHHHHHHHHHHHhCCCCEEEEcCCCCcchhhHHHHHHHHHHHcCcEEE
Q 018389 291 ACAAVGGILAQRALADDIHDVVYTPRKGEKLEGKLQIVLQAIIDNGVNVK 340 (357)
Q Consensus 291 AAa~VGkvLAeRakekGI~~VVFDpR~GykYHGRVKAfADAaRE~GL~FK 340 (357)
|+.-||+.||+++.+.|..=++.+ |+. .++..+++.+++.|..+.
T Consensus 39 as~gIG~~la~~l~~~G~~V~~~~-r~~----~~~~~~~~~l~~~~~~~~ 83 (301)
T 3tjr_A 39 GASGIGLATATEFARRGARLVLSD-VDQ----PALEQAVNGLRGQGFDAH 83 (301)
T ss_dssp TTSHHHHHHHHHHHHTTCEEEEEE-SCH----HHHHHHHHHHHHTTCCEE
T ss_pred CCCHHHHHHHHHHHHCCCEEEEEE-CCH----HHHHHHHHHHHhcCCceE
Confidence 345799999999999998766778 654 567777777777665443
No 104
>3qy7_A Tyrosine-protein phosphatase YWQE; TIM barrel, polymerase and histindinol phosphatase(PHP)-like phosphatase, hydrolase; 1.62A {Bacillus subtilis} PDB: 3qy6_A
Probab=26.31 E-value=57 Score=29.53 Aligned_cols=46 Identities=17% Similarity=0.324 Sum_probs=31.4
Q ss_pred HHHHHHHhCCCCEEEEcCCC--C------cchhhHHHHHHHHHHHcCcEEEEEe
Q 018389 298 ILAQRALADDIHDVVYTPRK--G------EKLEGKLQIVLQAIIDNGVNVKVKL 343 (357)
Q Consensus 298 vLAeRakekGI~~VVFDpR~--G------ykYHGRVKAfADAaRE~GL~FK~~l 343 (357)
-+++.|.+.||+.|++.+-. + ..+...+..|.+.+++.++.++|.+
T Consensus 24 ~~~~~a~~~G~~~i~~T~H~~~~~~~~~~~~i~~~~~~l~~~~~~~~~~i~I~~ 77 (262)
T 3qy7_A 24 EMARAAVRQGIRTIIATPHHNNGVYKNEPAAVREAADQLNKRLIKEDIPLHVLP 77 (262)
T ss_dssp HHHHHHHHTTCCEEECCCBSEETTEECCHHHHHHHHHHHHHHHHHTTCCCEEEC
T ss_pred HHHHHHHHCCCCEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCCCEEec
Confidence 47899999999999987521 1 1344556677777777666666643
No 105
>2duw_A Putative COA-binding protein; ligand binding protein; NMR {Klebsiella pneumoniae}
Probab=26.24 E-value=50 Score=27.06 Aligned_cols=33 Identities=15% Similarity=0.018 Sum_probs=25.7
Q ss_pred HHHHhCCCCEEEEcCCCCcchhhHHHHHHHHHHHcCcEE
Q 018389 301 QRALADDIHDVVYTPRKGEKLEGKLQIVLQAIIDNGVNV 339 (357)
Q Consensus 301 eRakekGI~~VVFDpR~GykYHGRVKAfADAaRE~GL~F 339 (357)
+.|.++||..|+.++ +.. -..+++.+++.|+.+
T Consensus 88 ~~~~~~g~~~i~i~~-~~~-----~~~l~~~a~~~Gi~~ 120 (145)
T 2duw_A 88 QEAIAIGAKTLWLQL-GVI-----NEQAAVLAREAGLSV 120 (145)
T ss_dssp HHHHHHTCCEEECCT-TCC-----CHHHHHHHHTTTCEE
T ss_pred HHHHHcCCCEEEEcC-ChH-----HHHHHHHHHHcCCEE
Confidence 346678999999884 333 678899999999976
No 106
>3noy_A 4-hydroxy-3-methylbut-2-EN-1-YL diphosphate synth; iron-sulfur protein, non-mevalonate pathway, terpene biosynt isoprenoid biosynthesis; 2.70A {Aquifex aeolicus}
Probab=26.17 E-value=49 Score=32.73 Aligned_cols=55 Identities=16% Similarity=0.257 Sum_probs=45.1
Q ss_pred CCHHHHHHHHHH-----------------HHHHHHhCCCCEEEEcCCCCcchhhHHHHHHHHHHHcCcEEEEE
Q 018389 287 RNATACAAVGGI-----------------LAQRALADDIHDVVYTPRKGEKLEGKLQIVLQAIIDNGVNVKVK 342 (357)
Q Consensus 287 ~NveAAa~VGkv-----------------LAeRakekGI~~VVFDpR~GykYHGRVKAfADAaRE~GL~FK~~ 342 (357)
.+.++|..|..+ +|..|.++|+..+-.+| +..--..+|+++++++++.|+...+=
T Consensus 68 p~~~~a~al~~I~~~~~vPlvaDiHf~~~lal~a~e~G~dklRINP-GNig~~~~~~~vv~~ak~~~~piRIG 139 (366)
T 3noy_A 68 PHKEDVEALEEIVKKSPMPVIADIHFAPSYAFLSMEKGVHGIRINP-GNIGKEEIVREIVEEAKRRGVAVRIG 139 (366)
T ss_dssp CSHHHHHHHHHHHHHCSSCEEEECCSCHHHHHHHHHTTCSEEEECH-HHHSCHHHHHHHHHHHHHHTCEEEEE
T ss_pred CChHHHHHHHHHHhcCCCCEEEeCCCCHHHHHHHHHhCCCeEEECC-cccCchhHHHHHHHHHHHcCCCEEEe
Confidence 366888888776 78899999999999996 33334578999999999999999884
No 107
>3gza_A Putative alpha-L-fucosidase; NP_812709.1, structural genomic center for structural genomics, JCSG; HET: MSE EPE; 1.60A {Bacteroides thetaiotaomicron vpi-5482}
Probab=26.06 E-value=1.1e+02 Score=30.30 Aligned_cols=49 Identities=14% Similarity=0.060 Sum_probs=37.0
Q ss_pred HHHHHHHHhCCCCEEEEcCC--CCc--------ch-----------hhHHHHHHHHHHHcCcEEEEEeec
Q 018389 297 GILAQRALADDIHDVVYTPR--KGE--------KL-----------EGKLQIVLQAIIDNGVNVKVKLKQ 345 (357)
Q Consensus 297 kvLAeRakekGI~~VVFDpR--~Gy--------kY-----------HGRVKAfADAaRE~GL~FK~~lkq 345 (357)
...|+.++++|..-||+..+ .|+ .| ..-|+.|++|+|+.||.|.+++-.
T Consensus 62 ~~w~~~~k~aGaky~v~t~kHHdGf~lw~s~~t~~~~~~sp~~~~~~D~v~e~~~A~r~~gl~~g~Y~S~ 131 (443)
T 3gza_A 62 DQWVQAAKAAGCKFAVLTATHETGFGLWQSDVNPYCLKAVKWRDGKGDIVRDFVNSCRKYGLQPGIYIGI 131 (443)
T ss_dssp HHHHHHHHTTTCSEEEEESCCSSCCBSSCCSSCSSBGGGSSGGGGTCCHHHHHHHHHHHHTCEEEEEECC
T ss_pred HHHHHHHHHcCCCEEEEeeEeCCCcccCCCCCCCcccccCCccCCCcCHHHHHHHHHHHcCCeEEEEECc
Confidence 45788999999999986531 111 11 245999999999999999999863
No 108
>3qiv_A Short-chain dehydrogenase or 3-oxoacyl-[acyl-CARR protein] reductase; structural genomics; 2.25A {Mycobacterium avium subsp}
Probab=25.75 E-value=1.2e+02 Score=25.55 Aligned_cols=43 Identities=16% Similarity=0.189 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHHHhCCCCEEEEcCCCCcchhhHHHHHHHHHHHcCcEE
Q 018389 292 CAAVGGILAQRALADDIHDVVYTPRKGEKLEGKLQIVLQAIIDNGVNV 339 (357)
Q Consensus 292 Aa~VGkvLAeRakekGI~~VVFDpR~GykYHGRVKAfADAaRE~GL~F 339 (357)
+.-||..||+++.+.|.+=++.| |+. .+...+++.+++.|-.+
T Consensus 18 s~giG~~~a~~l~~~G~~V~~~~-r~~----~~~~~~~~~~~~~~~~~ 60 (253)
T 3qiv_A 18 GGGIGQAYAEALAREGAAVVVAD-INA----EAAEAVAKQIVADGGTA 60 (253)
T ss_dssp TSHHHHHHHHHHHHTTCEEEEEE-SCH----HHHHHHHHHHHHTTCEE
T ss_pred CChHHHHHHHHHHHCCCEEEEEc-CCH----HHHHHHHHHHHhcCCcE
Confidence 45799999999999998877788 553 55666667666665443
No 109
>3osu_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, csgid, center for structural genomics O infectious diseases; 1.90A {Staphylococcus aureus subsp} SCOP: c.2.1.0 PDB: 3sj7_A*
Probab=25.49 E-value=1.1e+02 Score=26.04 Aligned_cols=44 Identities=18% Similarity=0.255 Sum_probs=32.1
Q ss_pred HHHHHHHHHHHHHhCCCCEEEEcCCCCcchhhHHHHHHHHHHHcCcEE
Q 018389 292 CAAVGGILAQRALADDIHDVVYTPRKGEKLEGKLQIVLQAIIDNGVNV 339 (357)
Q Consensus 292 Aa~VGkvLAeRakekGI~~VVFDpR~GykYHGRVKAfADAaRE~GL~F 339 (357)
+.-||+.||+++.+.|..-++.+.+. ..+..++++.+++.|..+
T Consensus 13 s~gIG~~ia~~l~~~G~~V~~~~~~~----~~~~~~~~~~~~~~~~~~ 56 (246)
T 3osu_A 13 SRGIGRSIALQLAEEGYNVAVNYAGS----KEKAEAVVEEIKAKGVDS 56 (246)
T ss_dssp SSHHHHHHHHHHHHTTCEEEEEESSC----HHHHHHHHHHHHHTTSCE
T ss_pred CChHHHHHHHHHHHCCCEEEEEeCCC----HHHHHHHHHHHHhcCCcE
Confidence 35699999999999998777777333 256677777777766543
No 110
>3uuw_A Putative oxidoreductase with NAD(P)-binding rossm domain; structural genomics, center for structural genomics of infec diseases, csgid; HET: 1PE PGE; 1.63A {Clostridium difficile}
Probab=25.46 E-value=81 Score=27.97 Aligned_cols=43 Identities=12% Similarity=0.109 Sum_probs=20.6
Q ss_pred HHHHHhCCCCEEEEcCCCCcchhhHHHHHHHHHHHcCcEEEEEee
Q 018389 300 AQRALADDIHDVVYTPRKGEKLEGKLQIVLQAIIDNGVNVKVKLK 344 (357)
Q Consensus 300 AeRakekGI~~VVFDpR~GykYHGRVKAfADAaRE~GL~FK~~lk 344 (357)
+..|+++|++ |..+ ...-.--.-...+++++++.|+.|-|-.-
T Consensus 83 ~~~al~~gk~-vl~E-KP~~~~~~~~~~l~~~a~~~g~~~~v~~~ 125 (308)
T 3uuw_A 83 IKILLNLGVH-VYVD-KPLASTVSQGEELIELSTKKNLNLMVGFN 125 (308)
T ss_dssp HHHHHHTTCE-EEEC-SSSSSSHHHHHHHHHHHHHHTCCEEECCG
T ss_pred HHHHHHCCCc-EEEc-CCCCCCHHHHHHHHHHHHHcCCEEEEeec
Confidence 3445555654 3333 22222234455555566666655555443
No 111
>1gvf_A Tagatose-bisphosphate aldolase AGAY; lyase, zinc.; HET: PGH; 1.45A {Escherichia coli} SCOP: c.1.10.2
Probab=25.24 E-value=1.5e+02 Score=27.90 Aligned_cols=45 Identities=9% Similarity=0.073 Sum_probs=36.8
Q ss_pred HHHHHHHhCCCCEEEEcCCCCcchhh---HHHHHHHHHHHcCcEEEEEe
Q 018389 298 ILAQRALADDIHDVVYTPRKGEKLEG---KLQIVLQAIIDNGVNVKVKL 343 (357)
Q Consensus 298 vLAeRakekGI~~VVFDpR~GykYHG---RVKAfADAaRE~GL~FK~~l 343 (357)
-...+|++.|.+.|.|| -+-..|.. ..+.+++-+...|+.+...|
T Consensus 88 e~i~~ai~~GFtSVMiD-gS~lp~eeNi~~Tk~vv~~ah~~gvsVEaEl 135 (286)
T 1gvf_A 88 DDIRRKVHAGVRSAMID-GSHFPFAENVKLVKSVVDFCHSQDCSVEAEL 135 (286)
T ss_dssp HHHHHHHHTTCCEEEEC-CTTSCHHHHHHHHHHHHHHHHHTTCEEEEEE
T ss_pred HHHHHHHHcCCCeEEEC-CCCCCHHHHHHHHHHHHHHHHHcCCEEEEEE
Confidence 34678899999999999 67778874 45678888999999888766
No 112
>3ucx_A Short chain dehydrogenase; ssgcid, seattle structural genomics center for infectious DI dehydrogenase, oxidoreductase; HET: 1PE; 1.85A {Mycobacterium smegmatis} SCOP: c.2.1.0
Probab=25.04 E-value=1e+02 Score=26.51 Aligned_cols=42 Identities=26% Similarity=0.343 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHHhCCCCEEEEcCCCCcchhhHHHHHHHHHHHcCcEE
Q 018389 293 AAVGGILAQRALADDIHDVVYTPRKGEKLEGKLQIVLQAIIDNGVNV 339 (357)
Q Consensus 293 a~VGkvLAeRakekGI~~VVFDpR~GykYHGRVKAfADAaRE~GL~F 339 (357)
.-||+.||+++.+.|.+=++.+ |+. .+...+++.+++.|-.+
T Consensus 21 ~gIG~aia~~l~~~G~~V~~~~-r~~----~~~~~~~~~~~~~~~~~ 62 (264)
T 3ucx_A 21 PALGTTLARRCAEQGADLVLAA-RTV----ERLEDVAKQVTDTGRRA 62 (264)
T ss_dssp TTHHHHHHHHHHHTTCEEEEEE-SCH----HHHHHHHHHHHHTTCCE
T ss_pred cHHHHHHHHHHHHCcCEEEEEe-CCH----HHHHHHHHHHHhcCCcE
Confidence 3589999999999998866778 553 56677777777766443
No 113
>4feg_A Pyruvate oxidase; carbanion, structure activity relationship, oxidation-reduct umpolung, thiamine diphosphate, reaction intermediate; HET: TDM FAD GOL; 1.09A {Lactobacillus plantarum} PDB: 4fee_A* 1y9d_A* 2ez9_A* 2ez4_A* 2ez8_A* 2ezt_A* 2ezu_A* 1pow_A* 1pox_A*
Probab=24.84 E-value=1e+02 Score=30.63 Aligned_cols=42 Identities=12% Similarity=0.193 Sum_probs=34.5
Q ss_pred HHHHHHHHHHHhCCCCEEEEcCCCCcchhhHHHHHHHHHHH--cCcEEEE
Q 018389 294 AVGGILAQRALADDIHDVVYTPRKGEKLEGKLQIVLQAIID--NGVNVKV 341 (357)
Q Consensus 294 ~VGkvLAeRakekGI~~VVFDpR~GykYHGRVKAfADAaRE--~GL~FK~ 341 (357)
.+|.+|++++.+.||+.|+-= .| +.+-.|+++|.+ .||.+..
T Consensus 12 ~~a~~l~~~L~~~GV~~vfg~--PG----~~~~~l~dal~~~~~~i~~i~ 55 (603)
T 4feg_A 12 LAGAAVIKVLEAWGVDHLYGI--PG----GSINSIMDALSAERDRIHYIQ 55 (603)
T ss_dssp EHHHHHHHHHHHTTCCEEEEC--CC----GGGHHHHHHHHHTTTTSEEEE
T ss_pred eHHHHHHHHHHHCCCCEEEEe--CC----CchHHHHHHHHhccCCCeEEE
Confidence 478999999999999996655 37 788899999987 4788765
No 114
>3qi7_A Putative transcriptional regulator; periplasmic binding protein-like, structural genomics, joint for structural genomics, JCSG; HET: MSE; 1.86A {Clostridium difficile}
Probab=24.71 E-value=84 Score=30.70 Aligned_cols=47 Identities=13% Similarity=0.206 Sum_probs=34.6
Q ss_pred HHHHHHHHHhCCCCEEEEc--CCCCc--chhhHHHHHHHHHHHcCcEEEEE
Q 018389 296 GGILAQRALADDIHDVVYT--PRKGE--KLEGKLQIVLQAIIDNGVNVKVK 342 (357)
Q Consensus 296 GkvLAeRakekGI~~VVFD--pR~Gy--kYHGRVKAfADAaRE~GL~FK~~ 342 (357)
|.++++-+++.|-..++|= |+.-. ...-|.+.|.++|.+.||.|...
T Consensus 144 gy~A~~~Li~~Ghk~Ia~Isgp~~~~~~~~~~R~~Gyk~Al~e~Gi~~~~~ 194 (371)
T 3qi7_A 144 GKVLAERSKEMGAKAFIHYASTDDLKDVNIAKRLEMIKETCKNIGLPFVQV 194 (371)
T ss_dssp HHHHHHHHHHTTCSCEEEEEETTGGGSHHHHHHHHHHHHHHHHTTCCEEEE
T ss_pred HHHHHHHHHHCCCCEEEEEeccccccchhHHHHHHHHHHHHHHcCCCceee
Confidence 5667788999999988754 12101 23349999999999999998665
No 115
>2jah_A Clavulanic acid dehydrogenase; short-chain dehydrogenase/reductase, lactamase inhibitor, AN biosynthesis, NADPH, oxidoreductase; HET: MSE NDP; 1.80A {Streptomyces clavuligerus} PDB: 2jap_A*
Probab=24.48 E-value=1.1e+02 Score=26.08 Aligned_cols=41 Identities=17% Similarity=0.242 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHHHhCCCCEEEEcCCCCcchhhHHHHHHHHHHHcCc
Q 018389 292 CAAVGGILAQRALADDIHDVVYTPRKGEKLEGKLQIVLQAIIDNGV 337 (357)
Q Consensus 292 Aa~VGkvLAeRakekGI~~VVFDpR~GykYHGRVKAfADAaRE~GL 337 (357)
+.-||+.||+++.+.|..=++.+ |+. .++..+++.+++.|-
T Consensus 16 s~gIG~aia~~l~~~G~~V~~~~-r~~----~~~~~~~~~l~~~~~ 56 (247)
T 2jah_A 16 SSGIGEATARALAAEGAAVAIAA-RRV----EKLRALGDELTAAGA 56 (247)
T ss_dssp SSHHHHHHHHHHHHTTCEEEEEE-SCH----HHHHHHHHHHHHTTC
T ss_pred CCHHHHHHHHHHHHCCCEEEEEE-CCH----HHHHHHHHHHHhcCC
Confidence 35789999999999998766677 553 556667777766553
No 116
>1u3d_A Cryptochrome 1 apoprotein; photolyase, AMPPNP, signaling protein; HET: FAD ANP NDS; 2.45A {Arabidopsis thaliana} SCOP: a.99.1.1 c.28.1.1 PDB: 1u3c_A*
Probab=24.36 E-value=1.1e+02 Score=30.24 Aligned_cols=47 Identities=9% Similarity=0.065 Sum_probs=35.0
Q ss_pred HHHHHHHHHHhCCCCEEEEcCCCCcch-hhHHHHHHHHHHHcCcEEEEE
Q 018389 295 VGGILAQRALADDIHDVVYTPRKGEKL-EGKLQIVLQAIIDNGVNVKVK 342 (357)
Q Consensus 295 VGkvLAeRakekGI~~VVFDpR~GykY-HGRVKAfADAaRE~GL~FK~~ 342 (357)
...+|.+-|.+.||+.|+|+ +....+ .-|-+++.+.+.+.||.+...
T Consensus 89 ~~~~l~~l~~~~~~~~V~~~-~~~~p~~~~rd~~v~~~l~~~gi~~~~~ 136 (509)
T 1u3d_A 89 SVASLLDVVKSTGASQIFFN-HLYDPLSLVRDHRAKDVLTAQGIAVRSF 136 (509)
T ss_dssp HHHHHHHHHHHHTCCEEEEE-CCCSHHHHHHHHHHHHHHHTTTCEEEEE
T ss_pred HHHHHHHHHHHcCCCEEEEe-cccCHHHHHHHHHHHHHHHHcCcEEEEE
Confidence 34567788888999999998 443333 366777888889999988653
No 117
>3m6y_A 4-hydroxy-2-oxoglutarate aldolase; structural genomics, MCSG, lyase, PSI-2, protein structure initiative; HET: MSE; 1.45A {Bacillus cereus} PDB: 3n73_A 3mux_A
Probab=24.36 E-value=1.1e+02 Score=29.24 Aligned_cols=45 Identities=18% Similarity=0.189 Sum_probs=38.3
Q ss_pred CHHHHHHHHHHHHHHHHhCCCCEEEEcCCCCcchhhHHHHHHHHHHHcCcEE
Q 018389 288 NATACAAVGGILAQRALADDIHDVVYTPRKGEKLEGKLQIVLQAIIDNGVNV 339 (357)
Q Consensus 288 NveAAa~VGkvLAeRakekGI~~VVFDpR~GykYHGRVKAfADAaRE~GL~F 339 (357)
.+++|. .-+++.|++.|-|=|=+|-.+-.-++|+|+++-+.|+-|
T Consensus 169 ~vetAi-------aml~dmG~~SvKffPM~Gl~~leEl~avAkAca~~g~~l 213 (275)
T 3m6y_A 169 PIKTAI-------ALVRDMGGNSLKYFPMKGLAHEEEYRAVAKACAEEGFAL 213 (275)
T ss_dssp EHHHHH-------HHHHHHTCCEEEECCCTTTTTHHHHHHHHHHHHHHTCEE
T ss_pred eHHHHH-------HHHHHcCCCeeeEeecCCcccHHHHHHHHHHHHHcCceE
Confidence 566654 347889999999888899999999999999999999844
No 118
>2vbf_A Branched-chain alpha-ketoacid decarboxylase; KDCA, flavoprotein, THDP-dependent enzymes, thiamine pyrophosphate, lyase; HET: TPP; 1.60A {Lactococcus lactis} PDB: 2vbg_A*
Probab=24.36 E-value=1.1e+02 Score=30.05 Aligned_cols=44 Identities=20% Similarity=0.168 Sum_probs=34.8
Q ss_pred HHHHHHHHHHHHhCCCCEEEEcCCCCcchhhHHHHHHHHHHHc-CcEEEEE
Q 018389 293 AAVGGILAQRALADDIHDVVYTPRKGEKLEGKLQIVLQAIIDN-GVNVKVK 342 (357)
Q Consensus 293 a~VGkvLAeRakekGI~~VVFDpR~GykYHGRVKAfADAaRE~-GL~FK~~ 342 (357)
..+++.|++.+.+.||+.|+-= .| +.+..|++++.+. ||.+.+-
T Consensus 25 ~~~a~~l~~~L~~~GV~~vfg~--PG----~~~~~l~~al~~~~~i~~i~~ 69 (570)
T 2vbf_A 25 YTVGDYLLDRLHELGIEEIFGV--PG----DYNLQFLDQIISREDMKWIGN 69 (570)
T ss_dssp CBHHHHHHHHHHHTTCCEEEEC--CC----GGGHHHHHHHHHCSSCEEEEC
T ss_pred CCHHHHHHHHHHHcCCCEEEEC--CC----cchHHHHHHHhcCCCCeEECc
Confidence 3578999999999999986655 36 6788899999875 7877653
No 119
>4da9_A Short-chain dehydrogenase/reductase; structural genomics, protein structure initiative, PSI-biology; 2.50A {Sinorhizobium meliloti}
Probab=24.35 E-value=1.1e+02 Score=26.74 Aligned_cols=44 Identities=14% Similarity=0.093 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHHHhCCCCEEEEcCCCCcchhhHHHHHHHHHHHcCcEE
Q 018389 292 CAAVGGILAQRALADDIHDVVYTPRKGEKLEGKLQIVLQAIIDNGVNV 339 (357)
Q Consensus 292 Aa~VGkvLAeRakekGI~~VVFDpR~GykYHGRVKAfADAaRE~GL~F 339 (357)
+.-||+.||+++.+.|..-++.+.|.. .....+++.+++.|..+
T Consensus 38 s~GIG~aia~~la~~G~~V~~~~~~~~----~~~~~~~~~~~~~~~~~ 81 (280)
T 4da9_A 38 RRGIGLGIARALAASGFDIAITGIGDA----EGVAPVIAELSGLGARV 81 (280)
T ss_dssp TSHHHHHHHHHHHHTTCEEEEEESCCH----HHHHHHHHHHHHTTCCE
T ss_pred CCHHHHHHHHHHHHCCCeEEEEeCCCH----HHHHHHHHHHHhcCCcE
Confidence 356999999999999988777883332 56677777777766443
No 120
>2wvg_A PDC, pyruvate decarboxylase; thiamine diphosphate, lyase, flavoprotein, metal-binding, alcohol fermentation; HET: TPU; 1.75A {Zymomonas mobilis} PDB: 2wva_A* 2wvh_A 3oe1_A* 1zpd_A*
Probab=24.31 E-value=90 Score=30.60 Aligned_cols=43 Identities=19% Similarity=0.227 Sum_probs=34.2
Q ss_pred HHHHHHHHHHHhCCCCEEEEcCCCCcchhhHHHHHHHHHHHc-CcEEEEE
Q 018389 294 AVGGILAQRALADDIHDVVYTPRKGEKLEGKLQIVLQAIIDN-GVNVKVK 342 (357)
Q Consensus 294 ~VGkvLAeRakekGI~~VVFDpR~GykYHGRVKAfADAaRE~-GL~FK~~ 342 (357)
.+++.|++.+.+.||+.|+-=| | +++..|++++.+. ||.+.+-
T Consensus 4 ~~a~~l~~~L~~~GV~~vfg~P--G----~~~~~l~~al~~~~~i~~i~~ 47 (568)
T 2wvg_A 4 TVGTYLAERLVQIGLKHHFAVA--G----DYNLVLLDNLLLNKNMEQVYC 47 (568)
T ss_dssp EHHHHHHHHHHHTTCSEEEECC--C----TTTHHHHHHHHTCTTSEEEEC
T ss_pred CHHHHHHHHHHHcCCCEEEeCC--C----CccHHHHHHHhccCCceEecc
Confidence 3688999999999999976663 6 6778899999875 7877653
No 121
>2ae2_A Protein (tropinone reductase-II); oxidoreductase, tropane alkaloid biosynthesis, reduction of tropinone to pseudotropine; HET: NAP PTO; 1.90A {Datura stramonium} SCOP: c.2.1.2 PDB: 2ae1_A* 1ipe_A* 1ipf_A*
Probab=24.19 E-value=1.3e+02 Score=25.66 Aligned_cols=42 Identities=12% Similarity=0.089 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHHHhCCCCEEEEcCCCCcchhhHHHHHHHHHHHcCcE
Q 018389 292 CAAVGGILAQRALADDIHDVVYTPRKGEKLEGKLQIVLQAIIDNGVN 338 (357)
Q Consensus 292 Aa~VGkvLAeRakekGI~~VVFDpR~GykYHGRVKAfADAaRE~GL~ 338 (357)
+.-||+.||+++.+.|.+=++.+ |+. .+...+++.+++.|-.
T Consensus 18 s~giG~~ia~~l~~~G~~V~~~~-r~~----~~~~~~~~~~~~~~~~ 59 (260)
T 2ae2_A 18 SRGIGYGIVEELASLGASVYTCS-RNQ----KELNDCLTQWRSKGFK 59 (260)
T ss_dssp SSHHHHHHHHHHHHTTCEEEEEE-SCH----HHHHHHHHHHHHTTCE
T ss_pred CcHHHHHHHHHHHHCCCEEEEEe-CCH----HHHHHHHHHHHhcCCc
Confidence 34689999999999998766677 554 4555666666665543
No 122
>3d02_A Putative LACI-type transcriptional regulator; periplasmic sugar-binding protein, structura genomics; HET: MSE GOL; 1.30A {Klebsiella pneumoniae subsp}
Probab=24.10 E-value=1.5e+02 Score=25.09 Aligned_cols=46 Identities=2% Similarity=-0.148 Sum_probs=27.9
Q ss_pred HHHHHHHHHh-CCCC-EEEEc-CCCCc-chhhHHHHHHHHHHHcCcEEEE
Q 018389 296 GGILAQRALA-DDIH-DVVYT-PRKGE-KLEGKLQIVLQAIIDNGVNVKV 341 (357)
Q Consensus 296 GkvLAeRake-kGI~-~VVFD-pR~Gy-kYHGRVKAfADAaRE~GL~FK~ 341 (357)
|+.+++.+.+ .|-. +++|= ...+. -...|...|.+++++.|..+.+
T Consensus 113 g~~a~~~l~~~~g~~~~i~~i~g~~~~~~~~~R~~gf~~~l~~~~~~~~~ 162 (303)
T 3d02_A 113 AAEYVEHMAKRMGGKGGYVIYVGSLTVPQHNLWADLLVKYQKEHYPDMHE 162 (303)
T ss_dssp HHHHHHHHHHHTTTCEEEEEECSCSSCHHHHHHHHHHHHHHHHHCTTEEE
T ss_pred HHHHHHHHHHHhCcCceEEEEecCCCCccHHHHHHHHHHHHHhhCCCCEE
Confidence 4444555555 5765 66542 11222 3458999999999998755544
No 123
>3o1i_D Periplasmic protein TORT; ligand free, two component sensor, periplasmic binding prote signaling protein; HET: PE4; 2.80A {Vibrio parahaemolyticus} PDB: 3o1h_B* 3o1j_C
Probab=24.09 E-value=82 Score=26.63 Aligned_cols=47 Identities=9% Similarity=0.019 Sum_probs=30.4
Q ss_pred HHHHHHHHHHhCC-----CCEEEEcC--CCCcchhhHHHHHHHHHHHcCcEEEE
Q 018389 295 VGGILAQRALADD-----IHDVVYTP--RKGEKLEGKLQIVLQAIIDNGVNVKV 341 (357)
Q Consensus 295 VGkvLAeRakekG-----I~~VVFDp--R~GykYHGRVKAfADAaRE~GL~FK~ 341 (357)
.|+.+|+.+.+.| ..+|.|=. ....-...|...|.+++++.|+.+..
T Consensus 118 ~g~~a~~~l~~~g~~~~~~~~i~~i~~~~~~~~~~~R~~gf~~~l~~~~~~~~~ 171 (304)
T 3o1i_D 118 MGYEAGKYLAERHPKGSGKTNIALLLGPRTRGGTKPVTTGFYEAIKNSDIHIVD 171 (304)
T ss_dssp HHHHHHHHHHTTSBTTTCCEEEEEECCCC-----CHHHHHHHHTTTTBTEEEEE
T ss_pred HHHHHHHHHHHhcccCCCCCEEEEEECCCCcchHHHHHHHHHHHHhcCCCEEEE
Confidence 3555666666677 77776541 11123457999999999999987754
No 124
>3e3m_A Transcriptional regulator, LACI family; structural genomics, DNA-binding, plasmid, transcription regulation, PSI-2; 1.60A {Silicibacter pomeroyi}
Probab=24.03 E-value=1e+02 Score=27.44 Aligned_cols=45 Identities=13% Similarity=0.123 Sum_probs=31.0
Q ss_pred HHHHHHHHHhCCCCEEEEc--CCCCcc-hhhHHHHHHHHHHHcCcEEE
Q 018389 296 GGILAQRALADDIHDVVYT--PRKGEK-LEGKLQIVLQAIIDNGVNVK 340 (357)
Q Consensus 296 GkvLAeRakekGI~~VVFD--pR~Gyk-YHGRVKAfADAaRE~GL~FK 340 (357)
|..+++.+.+.|-..|.|= +..... ...|...|.+++++.|+.+.
T Consensus 175 ~~~a~~~L~~~G~r~I~~i~~~~~~~~~~~~R~~Gf~~al~~~g~~~~ 222 (355)
T 3e3m_A 175 AYDMTNALLARGFRKIVFLGEKDDDWTRGAARRAGFKRAMREAGLNPD 222 (355)
T ss_dssp HHHHHHHHHHTTCCSEEEEEESSCTTSHHHHHHHHHHHHHHHTTSCSC
T ss_pred HHHHHHHHHHCCCCeEEEEccCcccChhHHHHHHHHHHHHHHCCcCCC
Confidence 4555666666798887653 111122 46899999999999999764
No 125
>2rhc_B Actinorhodin polyketide ketoreductase; oxidoreductase, combinatorial biosynthesis, short chain dehydrogenase/reductase; HET: NAP EMO; 2.10A {Streptomyces coelicolor} SCOP: c.2.1.2 PDB: 2rh4_A* 1w4z_A* 3csd_B* 3qrw_A* 3ri3_B* 2rhr_B* 1x7g_A* 1x7h_A* 1xr3_A*
Probab=23.66 E-value=1.1e+02 Score=26.56 Aligned_cols=41 Identities=22% Similarity=0.327 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHHHhCCCCEEEEcCCCCcchhhHHHHHHHHHHHcCc
Q 018389 292 CAAVGGILAQRALADDIHDVVYTPRKGEKLEGKLQIVLQAIIDNGV 337 (357)
Q Consensus 292 Aa~VGkvLAeRakekGI~~VVFDpR~GykYHGRVKAfADAaRE~GL 337 (357)
+.-||+.||+++.+.|..=++.+ |+. .+...+++.+++.|-
T Consensus 31 s~gIG~~ia~~l~~~G~~V~~~~-r~~----~~~~~~~~~l~~~~~ 71 (277)
T 2rhc_B 31 TSGIGLEIARRLGKEGLRVFVCA-RGE----EGLRTTLKELREAGV 71 (277)
T ss_dssp SSHHHHHHHHHHHHTTCEEEEEE-SCH----HHHHHHHHHHHHTTC
T ss_pred CCHHHHHHHHHHHHCCCEEEEEe-CCH----HHHHHHHHHHHhcCC
Confidence 35799999999999998766678 654 455666666666553
No 126
>3oa2_A WBPB; oxidoreductase, sugar biosynthesis, dehydrogenase; HET: NAD; 1.50A {Pseudomonas aeruginosa}
Probab=23.56 E-value=91 Score=28.37 Aligned_cols=41 Identities=5% Similarity=-0.068 Sum_probs=22.7
Q ss_pred CCHHHHHHHHHHHHHHHHhCCCCEEE-EcCCCCcchhhHHHHHHHHHHHc
Q 018389 287 RNATACAAVGGILAQRALADDIHDVV-YTPRKGEKLEGKLQIVLQAIIDN 335 (357)
Q Consensus 287 ~NveAAa~VGkvLAeRakekGI~~VV-FDpR~GykYHGRVKAfADAaRE~ 335 (357)
.+.+.|..+ .+.|.+.|+.-++ |. .+|+.-+..+.+.+.++
T Consensus 108 ~~~~ea~~l----~~~a~~~g~~~~v~~~----~R~~p~~~~~k~~i~~g 149 (318)
T 3oa2_A 108 PTPEMLDQL----AVIERETDKRLYNILQ----LRHHQAIIALKDKVARE 149 (318)
T ss_dssp SCHHHHHHH----HHHHHHHTCCEEECCG----GGGCHHHHHHHHHHHHS
T ss_pred CCHHHHHHH----HHHHHHhCCEEEEEEh----hhcCHHHHHHHHHHhcC
Confidence 355554443 3445555665433 43 56667777777766665
No 127
>2uz1_A Benzaldehyde lyase; thiamine diphosphate, thiamine pyrophosphate, benzoin, flavoprotein; HET: TPP; 1.65A {Pseudomonas fluorescens} PDB: 2ag1_A* 2ag0_A* 2uz1_B* 3iae_A* 3iaf_A* 3d7k_A*
Probab=23.52 E-value=66 Score=31.51 Aligned_cols=42 Identities=14% Similarity=0.309 Sum_probs=33.5
Q ss_pred HHHHHHHHHHHhCCCCEEEEcCCCCcchhhHHHHHHHHHHHcCcEEEE
Q 018389 294 AVGGILAQRALADDIHDVVYTPRKGEKLEGKLQIVLQAIIDNGVNVKV 341 (357)
Q Consensus 294 ~VGkvLAeRakekGI~~VVFDpR~GykYHGRVKAfADAaRE~GL~FK~ 341 (357)
.++..|++.+.+.||+.|+-=| | +++..|++++.+.||.+..
T Consensus 5 ~~a~~l~~~L~~~GV~~vfg~P--G----~~~~~l~~al~~~~i~~i~ 46 (563)
T 2uz1_A 5 TGGELVVRTLIKAGVEHLFGLH--G----AHIDTIFQACLDHDVPIID 46 (563)
T ss_dssp EHHHHHHHHHHHHTCCCEEECC--C----GGGHHHHHHHHHHTCCEEE
T ss_pred CHHHHHHHHHHHCCCCEEEECC--C----CchHHHHHHHHhcCCcEEe
Confidence 3688999999999999876653 6 6777899998877877654
No 128
>3a5v_A Alpha-galactosidase; beta/alpha barrel, N-glycosylation, hydrolase; HET: MAN NAG BMA 1PG; 2.00A {Umbelopsis vinacea}
Probab=23.52 E-value=1.3e+02 Score=28.86 Aligned_cols=57 Identities=9% Similarity=0.042 Sum_probs=41.1
Q ss_pred CCHHHHHHHHHHHHH-HHHhCCCCEEEEcCCCCcc---------------hhhHHHHHHHHHHHcCcEEEEEee
Q 018389 287 RNATACAAVGGILAQ-RALADDIHDVVYTPRKGEK---------------LEGKLQIVLQAIIDNGVNVKVKLK 344 (357)
Q Consensus 287 ~NveAAa~VGkvLAe-RakekGI~~VVFDpR~Gyk---------------YHGRVKAfADAaRE~GL~FK~~lk 344 (357)
.|-+........+|+ -++..|+.-|+.| -+.+. +-+=+++|++.+++.||+|.+.+-
T Consensus 23 ~~e~~i~~~ad~~~~~gl~~~G~~~~~iD-dgW~~~~r~~~G~~~~~~~kFP~Gl~~l~~~i~~~Glk~Giw~~ 95 (397)
T 3a5v_A 23 VDEQLILDAAKAIASSGLKDLGYNYVIID-DCWQKNERESSKTLLADPTKFPRGIKPLVDDIHNLGLKAGIYSS 95 (397)
T ss_dssp CCHHHHHHHHHHHHHHTHHHHTCCEEECC-SSCBCSSCCTTSCCCBCTTTCTTCHHHHHHHHHHTTCEEEEEEE
T ss_pred CCHHHHHHHHHHHHHcCCcccCceEEEEC-CCcCCCCCCCCCCeEEChhcCCcCHHHHHHHHHHcCCEEEEEec
Confidence 355666666666666 4455899999988 34332 212399999999999999999875
No 129
>2hsg_A Glucose-resistance amylase regulator; CCPA, transcriptional regulator, transcription regulator; 2.50A {Bacillus megaterium} SCOP: a.35.1.5 c.93.1.1 PDB: 1rzr_G 2jcg_A 1zvv_A 3oqo_A* 3oqm_A* 3oqn_A*
Probab=23.47 E-value=80 Score=27.62 Aligned_cols=45 Identities=11% Similarity=0.137 Sum_probs=30.6
Q ss_pred HHHHHHHHHhCCCCEEEEcC-CC-C-cchhhHHHHHHHHHHHcCcEEE
Q 018389 296 GGILAQRALADDIHDVVYTP-RK-G-EKLEGKLQIVLQAIIDNGVNVK 340 (357)
Q Consensus 296 GkvLAeRakekGI~~VVFDp-R~-G-ykYHGRVKAfADAaRE~GL~FK 340 (357)
|+.+++.+.+.|-..|.|=. .. + .-...|...|.+++++.||.+.
T Consensus 165 ~~~a~~~L~~~G~~~I~~i~~~~~~~~~~~~R~~Gf~~al~~~g~~~~ 212 (332)
T 2hsg_A 165 AFDAVQSLIDSGHKNIAFVSGTLEEPINHAKKVKGYKRALTESGLPVR 212 (332)
T ss_dssp HHHHHHHHHTTTCSCEEEEESCTTSHHHHTTHHHHHHHHHHTTTCCCC
T ss_pred HHHHHHHHHHCCCCEEEEEeCCcccCccHHHHHHHHHHHHHHcCCCCC
Confidence 45555666667988876531 11 2 2235799999999999998653
No 130
>2x7j_A 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene -1-carboxylate synthase; transferase, metal-binding; HET: TPP; 2.35A {Bacillus subtilis}
Probab=23.42 E-value=88 Score=31.06 Aligned_cols=45 Identities=18% Similarity=0.217 Sum_probs=35.7
Q ss_pred HHHHHHHHHHHHHhCCCCEEEEcCCCCcchhhHHHHHHHHHHHc-CcEEEEE
Q 018389 292 CAAVGGILAQRALADDIHDVVYTPRKGEKLEGKLQIVLQAIIDN-GVNVKVK 342 (357)
Q Consensus 292 Aa~VGkvLAeRakekGI~~VVFDpR~GykYHGRVKAfADAaRE~-GL~FK~~ 342 (357)
-..++.+|++.+.+.||+.|+-=| | +++-.|++++.+. ||.+.+-
T Consensus 30 ~~~~a~~lv~~L~~~GV~~vFg~P--G----~~~~~l~dal~~~~~i~~i~~ 75 (604)
T 2x7j_A 30 ITHYIGSFIDEFALSGITDAVVCP--G----SRSTPLAVLCAAHPDISVHVQ 75 (604)
T ss_dssp HHHHHHHHHHHHHHHTCCEEEECC--C----STTHHHHHHHHHCTTCEEEEC
T ss_pred hHHHHHHHHHHHHHcCCCEEEECc--C----cccHHHHHHHHhCCCceEEEe
Confidence 356889999999999999976663 6 6778899999764 7877653
No 131
>3l49_A ABC sugar (ribose) transporter, periplasmic substrate-binding subunit; sugar binding/transporter, structural genomics, PSI; HET: UNL; 2.30A {Rhodobacter sphaeroides}
Probab=23.23 E-value=1.5e+02 Score=24.82 Aligned_cols=49 Identities=8% Similarity=-0.085 Sum_probs=29.9
Q ss_pred CHHHHHHHHHHHHHHHHhCCCCEEEEcC-CCCc-chhhHHHHHHHHHHHc-CcE
Q 018389 288 NATACAAVGGILAQRALADDIHDVVYTP-RKGE-KLEGKLQIVLQAIIDN-GVN 338 (357)
Q Consensus 288 NveAAa~VGkvLAeRakekGI~~VVFDp-R~Gy-kYHGRVKAfADAaRE~-GL~ 338 (357)
|..++..+++.|++.+ .|-.+|.|=. ..+. ....|+..|.+++++. |+.
T Consensus 107 ~~~~g~~~~~~l~~~~--~g~~~i~~i~~~~~~~~~~~R~~gf~~~l~~~~~~~ 158 (291)
T 3l49_A 107 NYSIGAELALQMVADL--GGKGNVLVFNGFYSVPVCKIRYDQMKYVLEAFPDVK 158 (291)
T ss_dssp HHHHHHHHHHHHHHHH--TTCEEEEEECSCTTSHHHHHHHHHHHHHHHTCTTEE
T ss_pred hHHHHHHHHHHHHHHc--CCCceEEEEeCCCCCchHHHHHHHHHHHHHHCCCCE
Confidence 4445444444444432 6777876541 1222 3346899999999999 676
No 132
>3rc1_A Sugar 3-ketoreductase; sugar biosynthesis, TDP binding, NADP binding binding protein; HET: TLO NAP; 1.71A {Actinomadura kijaniata} PDB: 3rbv_A* 3rc2_A* 3rcb_A* 3rc7_A* 3rc9_A*
Probab=23.14 E-value=1.2e+02 Score=27.85 Aligned_cols=33 Identities=9% Similarity=-0.046 Sum_probs=17.6
Q ss_pred HHHHHHhCCCCEEE-EcCCCCcchhhHHHHHHHHHHHc
Q 018389 299 LAQRALADDIHDVV-YTPRKGEKLEGKLQIVLQAIIDN 335 (357)
Q Consensus 299 LAeRakekGI~~VV-FDpR~GykYHGRVKAfADAaRE~ 335 (357)
|++.|.+.|+.-++ |- ++|+.-+..+.+.+.++
T Consensus 132 l~~~a~~~g~~~~v~~~----~R~~p~~~~~k~~i~~G 165 (350)
T 3rc1_A 132 LFAVARERGLLLMENFM----FLHHPQHRQVADMLDEG 165 (350)
T ss_dssp HHHHHHHTTCCEEEECG----GGGCTHHHHHHHHHHTT
T ss_pred HHHHHHHhCCEEEEEec----ccCCHHHHHHHHHHhcC
Confidence 34445556655433 33 55666666666655543
No 133
>4ibo_A Gluconate dehydrogenase; enzyme function initiative structural genomics, oxidoreductase; 2.10A {Agrobacterium fabrum}
Probab=23.10 E-value=1e+02 Score=27.02 Aligned_cols=43 Identities=9% Similarity=0.156 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHHHhCCCCEEEEcCCCCcchhhHHHHHHHHHHHcCcEE
Q 018389 292 CAAVGGILAQRALADDIHDVVYTPRKGEKLEGKLQIVLQAIIDNGVNV 339 (357)
Q Consensus 292 Aa~VGkvLAeRakekGI~~VVFDpR~GykYHGRVKAfADAaRE~GL~F 339 (357)
+.-||+.||+++.+.|..=++.+ |.. .+...+++.+++.|-.+
T Consensus 35 s~gIG~aia~~la~~G~~V~~~~-r~~----~~~~~~~~~l~~~~~~~ 77 (271)
T 4ibo_A 35 SRGLGRAMAEGLAVAGARILING-TDP----SRVAQTVQEFRNVGHDA 77 (271)
T ss_dssp SSHHHHHHHHHHHHTTCEEEECC-SCH----HHHHHHHHHHHHTTCCE
T ss_pred CcHHHHHHHHHHHHCCCEEEEEe-CCH----HHHHHHHHHHHhcCCce
Confidence 34689999999999998766677 553 56667777777666443
No 134
>3fy4_A 6-4 photolyase; DNA repair, clock cryptochrome; HET: MES FAD; 2.70A {Arabidopsis thaliana}
Probab=22.87 E-value=87 Score=31.61 Aligned_cols=45 Identities=13% Similarity=0.085 Sum_probs=35.1
Q ss_pred HHHHHHHHHhCCCCEEEEcCCCCcchh-hHHHHHHHHHHHcCcEEEE
Q 018389 296 GGILAQRALADDIHDVVYTPRKGEKLE-GKLQIVLQAIIDNGVNVKV 341 (357)
Q Consensus 296 GkvLAeRakekGI~~VVFDpR~GykYH-GRVKAfADAaRE~GL~FK~ 341 (357)
..+|.+-|.+.||+.|+++ +.-..|. -|-+++.+.|++.||.|..
T Consensus 92 ~~vl~~L~~~~~~~~V~~n-~~~~p~~~~RD~~v~~~l~~~gI~~~~ 137 (537)
T 3fy4_A 92 GEVLVRCLQEWKVKRLCFE-YDTDPYYQALDVKVKDYASSTGVEVFS 137 (537)
T ss_dssp HHHHHHHHTTSCEEEEEEC-CCCSHHHHHHHHHHHHHHHHTTCEEEC
T ss_pred HHHHHHHHHHcCCCEEEEe-ccccHHHHHHHHHHHHHHHHcCCeEEE
Confidence 3568888899999999999 4433343 5667899999999999864
No 135
>3o9z_A Lipopolysaccaride biosynthesis protein WBPB; oxidoreductase, sugar biosynthesis, dehydrogenase; HET: NAD AKG; 1.45A {Thermus thermophilus} PDB: 3oa0_A*
Probab=22.78 E-value=95 Score=28.14 Aligned_cols=42 Identities=7% Similarity=-0.055 Sum_probs=25.2
Q ss_pred CCHHHHHHHHHHHHHHHHhCCCCEEE-EcCCCCcchhhHHHHHHHHHHHcC
Q 018389 287 RNATACAAVGGILAQRALADDIHDVV-YTPRKGEKLEGKLQIVLQAIIDNG 336 (357)
Q Consensus 287 ~NveAAa~VGkvLAeRakekGI~~VV-FDpR~GykYHGRVKAfADAaRE~G 336 (357)
.+.+.|.. |.+.|.+.|+.-++ |. ++|+.-+..+.+.+.++|
T Consensus 107 ~~~~ea~~----l~~~a~~~g~~~~v~~~----~R~~p~~~~~k~~i~~gG 149 (312)
T 3o9z_A 107 LWPEEIAR----LKELEARTGRRVYTVLQ----LRVHPSLLALKERLGQEK 149 (312)
T ss_dssp SCHHHHHH----HHHHHHHHCCCEEECCG----GGGCHHHHHHHHHHHTCC
T ss_pred CCHHHHHH----HHHHHHHcCCEEEEEee----hhcCHHHHHHHHHHHcCC
Confidence 35555544 34455666765433 43 567777777777777665
No 136
>2hq1_A Glucose/ribitol dehydrogenase; CTH-1438, structural genomics, southeast collaboratory for structural genomics, secsg, PSI; 1.90A {Clostridium thermocellum}
Probab=22.72 E-value=1.7e+02 Score=24.28 Aligned_cols=42 Identities=12% Similarity=0.108 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHHHhCCCCEEEEcCCCCcchhhHHHHHHHHHHHcCc
Q 018389 292 CAAVGGILAQRALADDIHDVVYTPRKGEKLEGKLQIVLQAIIDNGV 337 (357)
Q Consensus 292 Aa~VGkvLAeRakekGI~~VVFDpR~GykYHGRVKAfADAaRE~GL 337 (357)
+.-||+.||+++.+.|.+-++.+.|.. .....+++.+++.|.
T Consensus 14 sggiG~~~a~~l~~~G~~V~~~~~r~~----~~~~~~~~~~~~~~~ 55 (247)
T 2hq1_A 14 SRGLGKAIAWKLGNMGANIVLNGSPAS----TSLDATAEEFKAAGI 55 (247)
T ss_dssp SSHHHHHHHHHHHHTTCEEEEEECTTC----SHHHHHHHHHHHTTC
T ss_pred CchHHHHHHHHHHHCCCEEEEEcCcCH----HHHHHHHHHHHhcCC
Confidence 357999999999999976556642553 345556666665553
No 137
>3afn_B Carbonyl reductase; alpha/beta/alpha, rossmann-fold, oxidoreductase; HET: NAP; 1.63A {Sphingomonas SP} PDB: 3afm_A*
Probab=22.69 E-value=1.6e+02 Score=24.45 Aligned_cols=41 Identities=12% Similarity=0.089 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHHHhCCCCEEEEcCCC-CcchhhHHHHHHHHHHHcCc
Q 018389 292 CAAVGGILAQRALADDIHDVVYTPRK-GEKLEGKLQIVLQAIIDNGV 337 (357)
Q Consensus 292 Aa~VGkvLAeRakekGI~~VVFDpR~-GykYHGRVKAfADAaRE~GL 337 (357)
+.-||..||+++.+.|.+=++.+ |. . .++..+++.+++.|-
T Consensus 16 sggiG~~~a~~l~~~G~~V~~~~-r~~~----~~~~~~~~~~~~~~~ 57 (258)
T 3afn_B 16 SQGIGLATARLFARAGAKVGLHG-RKAP----ANIDETIASMRADGG 57 (258)
T ss_dssp SSHHHHHHHHHHHHTTCEEEEEE-SSCC----TTHHHHHHHHHHTTC
T ss_pred CChHHHHHHHHHHHCCCEEEEEC-CCch----hhHHHHHHHHHhcCC
Confidence 45799999999999998766778 55 3 334455555555443
No 138
>3is3_A 17BETA-hydroxysteroid dehydrogenase; short chain dehydrogenase/REDU SDR, fungi, oxidoreductase; HET: GOL; 1.48A {Cochliobolus lunatus} PDB: 3qwf_A* 3qwh_A* 3qwi_A* 3itd_A
Probab=22.53 E-value=1.3e+02 Score=25.99 Aligned_cols=45 Identities=16% Similarity=0.086 Sum_probs=32.1
Q ss_pred HHHHHHHHHHHHHHhCCCCEEEEcCCCCcchhhHHHHHHHHHHHcCcEE
Q 018389 291 ACAAVGGILAQRALADDIHDVVYTPRKGEKLEGKLQIVLQAIIDNGVNV 339 (357)
Q Consensus 291 AAa~VGkvLAeRakekGI~~VVFDpR~GykYHGRVKAfADAaRE~GL~F 339 (357)
++.-||+.||+++.+.|..-++.+.+.. .....+++.+++.|-.+
T Consensus 26 as~gIG~aia~~l~~~G~~V~~~~~~~~----~~~~~~~~~~~~~~~~~ 70 (270)
T 3is3_A 26 SGRGIGAAVAVHLGRLGAKVVVNYANST----KDAEKVVSEIKALGSDA 70 (270)
T ss_dssp TTSHHHHHHHHHHHHTTCEEEEEESSCH----HHHHHHHHHHHHTTCCE
T ss_pred CCchHHHHHHHHHHHCCCEEEEEcCCCH----HHHHHHHHHHHhcCCcE
Confidence 3457999999999999987666673332 55677777777766443
No 139
>4eyg_A Twin-arginine translocation pathway signal; PSI-biology, MCSG, midwest center for structural genomics, transporter; HET: VNL; 1.86A {Rhodopseudomonas palustris} PDB: 4ey3_A* 3t0n_A* 4eyk_A*
Probab=22.25 E-value=1.5e+02 Score=25.85 Aligned_cols=47 Identities=13% Similarity=0.074 Sum_probs=30.6
Q ss_pred HHHHHHHHHHhCCCCEEEEcCCCCcchhhHHHHHHHHHHHcCcEEEE
Q 018389 295 VGGILAQRALADDIHDVVYTPRKGEKLEGKLQIVLQAIIDNGVNVKV 341 (357)
Q Consensus 295 VGkvLAeRakekGI~~VVFDpR~GykYHGRVKAfADAaRE~GL~FK~ 341 (357)
.|..+++-+++.|..+|.+=-.....-..+.++|.+++.+.|+.+-.
T Consensus 126 ~~~~~~~~l~~~g~~~ia~i~~~~~~g~~~~~~~~~~l~~~g~~v~~ 172 (368)
T 4eyg_A 126 SSIIIGDWAAKNGIKKVATLTSDYAPGNDALAFFKERFTAGGGEIVE 172 (368)
T ss_dssp HHHHHHHHHHHTTCCEEEEEEESSHHHHHHHHHHHHHHHHTTCEEEE
T ss_pred HHHHHHHHHHHcCCCEEEEEecCchHhHHHHHHHHHHHHHcCCEEEE
Confidence 34455666667799887522012222346699999999999997643
No 140
>4iin_A 3-ketoacyl-acyl carrier protein reductase (FABG); structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD; 2.40A {Helicobacter pylori} PDB: 4ijk_A
Probab=21.97 E-value=1.7e+02 Score=25.19 Aligned_cols=43 Identities=9% Similarity=0.154 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHHhCCCCEEEEcCCCCcchhhHHHHHHHHHHHcCcEE
Q 018389 293 AAVGGILAQRALADDIHDVVYTPRKGEKLEGKLQIVLQAIIDNGVNV 339 (357)
Q Consensus 293 a~VGkvLAeRakekGI~~VVFDpR~GykYHGRVKAfADAaRE~GL~F 339 (357)
.-||+.||+++.+.|..-++.+ |.. .....++++.+++.|..+
T Consensus 39 ~gIG~~la~~l~~~G~~V~~~~-r~~---~~~~~~~~~~~~~~~~~~ 81 (271)
T 4iin_A 39 KGIGAEIAKTLASMGLKVWINY-RSN---AEVADALKNELEEKGYKA 81 (271)
T ss_dssp SHHHHHHHHHHHHTTCEEEEEE-SSC---HHHHHHHHHHHHHTTCCE
T ss_pred cHHHHHHHHHHHHCCCEEEEEe-CCC---HHHHHHHHHHHHhcCCce
Confidence 5699999999999999877777 533 245666777777666544
No 141
>3q94_A Fructose-bisphosphate aldolase, class II; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta barrel; HET: 13P; 2.30A {Bacillus anthracis} SCOP: c.1.10.0
Probab=21.86 E-value=1.4e+02 Score=28.15 Aligned_cols=44 Identities=16% Similarity=0.212 Sum_probs=36.4
Q ss_pred HHHHHHhCCCCEEEEcCCCCcchh---hHHHHHHHHHHHcCcEEEEEe
Q 018389 299 LAQRALADDIHDVVYTPRKGEKLE---GKLQIVLQAIIDNGVNVKVKL 343 (357)
Q Consensus 299 LAeRakekGI~~VVFDpR~GykYH---GRVKAfADAaRE~GL~FK~~l 343 (357)
...+|+++|.+.|.|| -+-..|. -..+.+++-+...|+.+...|
T Consensus 95 ~i~~ai~~GFtSVMiD-gS~~p~eeNi~~Tk~vv~~ah~~gvsVEaEl 141 (288)
T 3q94_A 95 KCKEAIDAGFTSVMID-ASHHPFEENVETTKKVVEYAHARNVSVEAEL 141 (288)
T ss_dssp HHHHHHHHTCSEEEEC-CTTSCHHHHHHHHHHHHHHHHTTTCEEEEEE
T ss_pred HHHHHHHcCCCeEEEe-CCCCCHHHHHHHHHHHHHHHHHcCCeEEEEe
Confidence 4678999999999999 6777887 455678888999999887765
No 142
>3nkl_A UDP-D-quinovosamine 4-dehydrogenase; alpha-beta fold, structural genomics, PSI-2, protein structu initiative; HET: MSE GOL; 1.90A {Vibrio fischeri}
Probab=21.84 E-value=1.5e+02 Score=22.88 Aligned_cols=41 Identities=10% Similarity=0.082 Sum_probs=29.8
Q ss_pred HHHHHhCCCCEEEEcCCCCcchhhHHHHHHHHHHHcCcEEEEE
Q 018389 300 AQRALADDIHDVVYTPRKGEKLEGKLQIVLQAIIDNGVNVKVK 342 (357)
Q Consensus 300 AeRakekGI~~VVFDpR~GykYHGRVKAfADAaRE~GL~FK~~ 342 (357)
.+.+.+.+|..|+.-. +..-+..++.+++.+.+.|+.+.+-
T Consensus 58 ~~~~~~~~id~viia~--~~~~~~~~~~i~~~l~~~gv~v~~v 98 (141)
T 3nkl_A 58 ERLIKKHCISTVLLAV--PSASQVQKKVIIESLAKLHVEVLTI 98 (141)
T ss_dssp HHHHHHHTCCEEEECC--TTSCHHHHHHHHHHHHTTTCEEEEC
T ss_pred HHHHHHCCCCEEEEeC--CCCCHHHHHHHHHHHHHcCCeEEEC
Confidence 3444566888888763 3334578899999999999998763
No 143
>3hww_A 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene- carboxylate synthase; menaquinone, THDP, Mg, vitamin K2, carboxylase, magnesium; HET: AKG; 1.95A {Escherichia coli k-12} PDB: 3flm_A* 3hwx_A* 2jlc_A* 2jla_A*
Probab=21.81 E-value=1.2e+02 Score=29.74 Aligned_cols=43 Identities=5% Similarity=0.134 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHHhCCCCEEEEcCCCCcchhhHHHHHHHHHHH-cCcEEEE
Q 018389 293 AAVGGILAQRALADDIHDVVYTPRKGEKLEGKLQIVLQAIID-NGVNVKV 341 (357)
Q Consensus 293 a~VGkvLAeRakekGI~~VVFDpR~GykYHGRVKAfADAaRE-~GL~FK~ 341 (357)
..+|++|++++.+.||+.|+-= .| |++-.|++++.+ .||.+-+
T Consensus 8 ~~~a~~lv~~L~~~GV~~vFg~--PG----~~~~~l~dal~~~~~i~~i~ 51 (556)
T 3hww_A 8 RRWAAVILEALTRHGVRHICIA--PG----SRSTLLTLAAAENSAFIHHT 51 (556)
T ss_dssp HHHHHHHHHHHHTTTCCEEEEC--CC----TTSHHHHHHHHHCTTCEEEE
T ss_pred hHHHHHHHHHHHHCCCCEEEEc--CC----CCcHHHHHHHhhCCCceEEE
Confidence 4689999999999999996655 36 667788999865 5777654
No 144
>4g81_D Putative hexonate dehydrogenase; enzyme function initiative, EFI, structural genomics, dehydr oxidoreductase; 1.90A {Salmonella enterica subsp}
Probab=21.77 E-value=1.1e+02 Score=27.66 Aligned_cols=43 Identities=12% Similarity=0.139 Sum_probs=34.1
Q ss_pred HHHHHHHHHHHHHhCCCCEEEEcCCCCcchhhHHHHHHHHHHHcCcEE
Q 018389 292 CAAVGGILAQRALADDIHDVVYTPRKGEKLEGKLQIVLQAIIDNGVNV 339 (357)
Q Consensus 292 Aa~VGkvLAeRakekGI~~VVFDpR~GykYHGRVKAfADAaRE~GL~F 339 (357)
+.-||+.+|+++.+.|-+=|+.| |+. .+++..++.+++.|.+.
T Consensus 18 s~GIG~aia~~la~~Ga~Vvi~~-~~~----~~~~~~~~~l~~~g~~~ 60 (255)
T 4g81_D 18 ARGLGFAYAEGLAAAGARVILND-IRA----TLLAESVDTLTRKGYDA 60 (255)
T ss_dssp SSHHHHHHHHHHHHTTCEEEECC-SCH----HHHHHHHHHHHHTTCCE
T ss_pred CcHHHHHHHHHHHHCCCEEEEEE-CCH----HHHHHHHHHHHhcCCcE
Confidence 45699999999999999777777 554 67788888888887654
No 145
>3ohs_X Trans-1,2-dihydrobenzene-1,2-DIOL dehydrogenase; dimeric dihydrodiol dehydrogenase, MDD, oxidoreductase; 1.90A {Macaca fascicularis} PDB: 2o48_X 2poq_X* 2o4u_X
Probab=21.71 E-value=1.3e+02 Score=26.99 Aligned_cols=33 Identities=3% Similarity=-0.059 Sum_probs=17.0
Q ss_pred HHHHHhCCCCEEEEcCCCCcchhhHHHHHHHHHHHc
Q 018389 300 AQRALADDIHDVVYTPRKGEKLEGKLQIVLQAIIDN 335 (357)
Q Consensus 300 AeRakekGI~~VVFDpR~GykYHGRVKAfADAaRE~ 335 (357)
.+.|.+.|+.-++-- .++|+.-+..+.+.++++
T Consensus 110 ~~~a~~~~~~~~v~~---~~r~~p~~~~~k~~i~~g 142 (334)
T 3ohs_X 110 VTEARSRGLFLMEAI---WTRFFPASEALRSVLAQG 142 (334)
T ss_dssp HHHHHHTTCCEEEEC---GGGGSHHHHHHHHHHHHT
T ss_pred HHHHHHhCCEEEEEE---hHhcCHHHHHHHHHHhcC
Confidence 344555665443321 255666666666665543
No 146
>3qlj_A Short chain dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, tuberculosis; 1.80A {Mycobacterium avium}
Probab=21.66 E-value=1.8e+02 Score=25.89 Aligned_cols=49 Identities=20% Similarity=0.077 Sum_probs=34.3
Q ss_pred HHHHHHHHHHHHHHhCCCCEEEEcCCCC------cchhhHHHHHHHHHHHcCcEEE
Q 018389 291 ACAAVGGILAQRALADDIHDVVYTPRKG------EKLEGKLQIVLQAIIDNGVNVK 340 (357)
Q Consensus 291 AAa~VGkvLAeRakekGI~~VVFDpR~G------ykYHGRVKAfADAaRE~GL~FK 340 (357)
++.-||..||+++.+.|..-++.| |+- ..-......+++.+.+.|-.+.
T Consensus 35 as~GIG~aia~~la~~G~~Vv~~~-r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (322)
T 3qlj_A 35 AGGGIGRAHALAFAAEGARVVVND-IGVGLDGSPASGGSAAQSVVDEITAAGGEAV 89 (322)
T ss_dssp TTSHHHHHHHHHHHHTTCEEEEEC-CCBCTTSSBTCTTSHHHHHHHHHHHTTCEEE
T ss_pred CCcHHHHHHHHHHHHCCCEEEEEe-CcccccccccccHHHHHHHHHHHHhcCCcEE
Confidence 345799999999999998777788 440 1113567777777777775443
No 147
>3jvd_A Transcriptional regulators; structural genomics, PSI-2, sugar binding protein, transcrip regulation, protein structure initiative; 2.30A {Corynebacterium glutamicum}
Probab=21.64 E-value=1.3e+02 Score=26.47 Aligned_cols=44 Identities=9% Similarity=-0.041 Sum_probs=32.4
Q ss_pred HHHHHHHHHHhCCCCEEEEc--CCCCcchhhHHHHHHHHHHHcCcE
Q 018389 295 VGGILAQRALADDIHDVVYT--PRKGEKLEGKLQIVLQAIIDNGVN 338 (357)
Q Consensus 295 VGkvLAeRakekGI~~VVFD--pR~GykYHGRVKAfADAaRE~GL~ 338 (357)
.|+.+++.+.+.|-..|.|= +....-.+.|...|.+++++.|+.
T Consensus 161 ~~~~a~~~L~~~G~~~I~~i~~~~~~~~~~~R~~Gf~~al~~~g~~ 206 (333)
T 3jvd_A 161 GFFQLTESVLGGSGMNIAALVGEESLSTTQERMRGISHAASIYGAE 206 (333)
T ss_dssp HHHHHHHHHCCSSSCEEEEEESCTTSHHHHHHHHHHHHHHHHTTCE
T ss_pred HHHHHHHHHHHCCCCeEEEEeCCCCCccHHHHHHHHHHHHHHCCCC
Confidence 35566677777899988653 122234568999999999999998
No 148
>2g84_A Cytidine and deoxycytidylate deaminase zinc-bindi; zinc-binding region, structural genomics, PSI, protein structure initiative; 1.40A {Nitrosomonas europaea} SCOP: c.97.1.2
Probab=21.63 E-value=3.1e+02 Score=23.97 Aligned_cols=40 Identities=8% Similarity=0.124 Sum_probs=24.3
Q ss_pred HHHHHhCCCCEEEEcCCCCcchhhHHH--------HHHHHHHHcCcEEEE
Q 018389 300 AQRALADDIHDVVYTPRKGEKLEGKLQ--------IVLQAIIDNGVNVKV 341 (357)
Q Consensus 300 AeRakekGI~~VVFDpR~GykYHGRVK--------AfADAaRE~GL~FK~ 341 (357)
|.....+||..|||-. . +.--|.+. ..++.+++.||.+..
T Consensus 118 a~Aii~agI~rVv~g~-~-d~~~~~~G~~~~~~~~~~~~~l~~~~i~V~~ 165 (197)
T 2g84_A 118 FGAVIWSGVRSLVCAA-R-SDDVEAIGFDEGPRPENWMGGLEARGITVTT 165 (197)
T ss_dssp HHHHHHHCCSEEEEEE-C-HHHHHHTTCCCCCCCTTHHHHHHHTTCEEEC
T ss_pred HHHHHHhCcCEEEEEe-c-CCCccccCcccccchhHHHHHHhcCCCEEEe
Confidence 5667789999999852 1 11111111 245678889988753
No 149
>3zyy_X Iron-sulfur cluster binding protein; iron-sulfur-binding protein, ashka family, ATPase; 2.20A {Carboxydothermus hydrogenoformans}
Probab=21.45 E-value=2.1e+02 Score=29.84 Aligned_cols=65 Identities=18% Similarity=0.239 Sum_probs=48.7
Q ss_pred CCCCeEEEEEecCCeEEEEEEeCCCCeEEEEEcccchhhhcccCCCCCH----HHH---------------HHHHHHHHH
Q 018389 241 YHEPFCLDIYISKASVRACIVHRVTSKVVVVAHSISKDMKFDLDSTRNA----TAC---------------AAVGGILAQ 301 (357)
Q Consensus 241 Y~rPfRL~VfrSNKHIYAQVIDD~~GkTLaSAST~EkdIK~~L~St~Nv----eAA---------------a~VGkvLAe 301 (357)
..++|-|-|-.---.|.|+++|-.+|.+|+++|+.-+.+.. +.|+ ..| ..|-++|.+
T Consensus 203 ~~~~~GlAvDiGTTtv~~~LvdL~tG~~l~~~~~~NpQ~~~----G~DVisRI~~a~~~~~g~~~L~~~v~~~in~li~~ 278 (631)
T 3zyy_X 203 SQRVFGLAIDIGTTTVVVQLVDLVSGKVLGTKGNYNKQAAF----GDDVISRIIYVDENPDGAEKLRKAVLSTINELIFQ 278 (631)
T ss_dssp CCCCEEEEEEECSSEEEEEEEETTTCCEEEEEEEECGGGGT----CSSHHHHHHHHHHCTTHHHHHHHHHHHHHHHHHHH
T ss_pred CCCceEEEEEecccceeEEEEECCCCCEEEeecccCCCCCc----chHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHH
Confidence 34678899999999999999999999999999999888653 2233 112 234467777
Q ss_pred HHHhCCCC
Q 018389 302 RALADDIH 309 (357)
Q Consensus 302 RakekGI~ 309 (357)
-|.++||.
T Consensus 279 l~~~~~i~ 286 (631)
T 3zyy_X 279 LCKEHGVE 286 (631)
T ss_dssp HHHHHTCC
T ss_pred HHHHcCCC
Confidence 77777764
No 150
>3gaf_A 7-alpha-hydroxysteroid dehydrogenase; seattle structural genomics center for infectious disease, ssgcid, oxidoreductase, structural genomics; 2.20A {Brucella melitensis}
Probab=21.39 E-value=1.1e+02 Score=26.36 Aligned_cols=42 Identities=24% Similarity=0.174 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHHhCCCCEEEEcCCCCcchhhHHHHHHHHHHHcCcEE
Q 018389 293 AAVGGILAQRALADDIHDVVYTPRKGEKLEGKLQIVLQAIIDNGVNV 339 (357)
Q Consensus 293 a~VGkvLAeRakekGI~~VVFDpR~GykYHGRVKAfADAaRE~GL~F 339 (357)
.-||+.||+++.+.|.+=++.| |.. .+..++++.+++.|-.+
T Consensus 22 ~gIG~~ia~~l~~~G~~V~~~~-r~~----~~~~~~~~~~~~~~~~~ 63 (256)
T 3gaf_A 22 AGIGRAIAGTFAKAGASVVVTD-LKS----EGAEAVAAAIRQAGGKA 63 (256)
T ss_dssp SHHHHHHHHHHHHHTCEEEEEE-SSH----HHHHHHHHHHHHTTCCE
T ss_pred CHHHHHHHHHHHHCCCEEEEEe-CCH----HHHHHHHHHHHhcCCcE
Confidence 4689999999999998877788 554 56667777777766443
No 151
>3oqb_A Oxidoreductase; structural genomics, protein structure INI NEW YORK structural genomix research consortium, NYSGXRC, PSI-2; 2.60A {Bradyrhizobium japonicum}
Probab=21.39 E-value=1.1e+02 Score=27.96 Aligned_cols=35 Identities=6% Similarity=-0.081 Sum_probs=22.4
Q ss_pred HHHHHHHhCCCCEEEEcCCCCcchhhHHHHHHHHHHHc
Q 018389 298 ILAQRALADDIHDVVYTPRKGEKLEGKLQIVLQAIIDN 335 (357)
Q Consensus 298 vLAeRakekGI~~VVFDpR~GykYHGRVKAfADAaRE~ 335 (357)
.|.+.|.+.|+.-.+-- -++|+--++.+.+.+.++
T Consensus 125 ~l~~~a~~~~~~~~v~~---~~r~~p~~~~~~~~i~~g 159 (383)
T 3oqb_A 125 EVVKLANSKGVKHGTVQ---DKLFLPGLKKIAFLRDSG 159 (383)
T ss_dssp HHHHHHHHTTCCEEECC---GGGGSHHHHHHHHHHHTT
T ss_pred HHHHHHHHcCCeEEEEe---ccccCHHHHHHHHHHHcC
Confidence 34556777787543322 267778888888877765
No 152
>3i1j_A Oxidoreductase, short chain dehydrogenase/reducta; dimer, MIXE beta, structural genomics, PSI-2; 1.90A {Pseudomonas syringae PV} SCOP: c.2.1.0
Probab=21.37 E-value=1.2e+02 Score=25.47 Aligned_cols=40 Identities=23% Similarity=0.235 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHHHhCCCCEEEEcCCCCcchhhHHHHHHHHHHHcC
Q 018389 292 CAAVGGILAQRALADDIHDVVYTPRKGEKLEGKLQIVLQAIIDNG 336 (357)
Q Consensus 292 Aa~VGkvLAeRakekGI~~VVFDpR~GykYHGRVKAfADAaRE~G 336 (357)
+.-||..||+++.+.|.+=++.+ |+. .+...+++.+++.|
T Consensus 23 s~gIG~~ia~~l~~~G~~V~~~~-r~~----~~~~~~~~~~~~~~ 62 (247)
T 3i1j_A 23 ARGIGAAAARAYAAHGASVVLLG-RTE----ASLAEVSDQIKSAG 62 (247)
T ss_dssp TSHHHHHHHHHHHHTTCEEEEEE-SCH----HHHHHHHHHHHHTT
T ss_pred CChHHHHHHHHHHHCCCEEEEEe-cCH----HHHHHHHHHHHhcC
Confidence 45799999999999998766778 653 56666777776655
No 153
>1ae1_A Tropinone reductase-I; oxidoreductase, tropane alkaloid biosynthesis, reduction of tropinone to tropine, short-chain dehydrogenase; HET: NAP; 2.40A {Datura stramonium} SCOP: c.2.1.2
Probab=21.26 E-value=1.4e+02 Score=25.91 Aligned_cols=42 Identities=14% Similarity=0.196 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHHHhCCCCEEEEcCCCCcchhhHHHHHHHHHHHcCcE
Q 018389 292 CAAVGGILAQRALADDIHDVVYTPRKGEKLEGKLQIVLQAIIDNGVN 338 (357)
Q Consensus 292 Aa~VGkvLAeRakekGI~~VVFDpR~GykYHGRVKAfADAaRE~GL~ 338 (357)
+.-||+.||+++.+.|.+=++.+ |+. .++..+++.+++.|..
T Consensus 30 s~gIG~aia~~l~~~G~~V~~~~-r~~----~~~~~~~~~~~~~~~~ 71 (273)
T 1ae1_A 30 SKGIGYAIVEELAGLGARVYTCS-RNE----KELDECLEIWREKGLN 71 (273)
T ss_dssp SSHHHHHHHHHHHHTTCEEEEEE-SCH----HHHHHHHHHHHHTTCC
T ss_pred cchHHHHHHHHHHHCCCEEEEEe-CCH----HHHHHHHHHHHhcCCc
Confidence 34789999999999997766677 553 4455566666655543
No 154
>1zem_A Xylitol dehydrogenase; rossmann fold, dinucleotide-binding domain, oxidoreductase; HET: NAD; 1.90A {Gluconobacter oxydans} SCOP: c.2.1.2
Probab=21.20 E-value=1.2e+02 Score=25.94 Aligned_cols=41 Identities=15% Similarity=0.140 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHHHhCCCCEEEEcCCCCcchhhHHHHHHHHHHHcCc
Q 018389 292 CAAVGGILAQRALADDIHDVVYTPRKGEKLEGKLQIVLQAIIDNGV 337 (357)
Q Consensus 292 Aa~VGkvLAeRakekGI~~VVFDpR~GykYHGRVKAfADAaRE~GL 337 (357)
+.-||+.||+++.+.|..=++.+ |+. .+...+++.+++.|-
T Consensus 16 s~gIG~~ia~~l~~~G~~V~~~~-r~~----~~~~~~~~~~~~~~~ 56 (262)
T 1zem_A 16 GGNIGLATALRLAEEGTAIALLD-MNR----EALEKAEASVREKGV 56 (262)
T ss_dssp TSHHHHHHHHHHHHTTCEEEEEE-SCH----HHHHHHHHHHHTTTS
T ss_pred CcHHHHHHHHHHHHCCCEEEEEe-CCH----HHHHHHHHHHHhcCC
Confidence 45789999999999998766677 553 455666666666553
No 155
>2vbi_A Pyruvate decarboxylase; thiamine pyrophosphate, lyase, pyruv flavoprotein, THDP-dependent enzyme; HET: TPP; 2.75A {Acetobacter pasteurianus}
Probab=21.11 E-value=94 Score=30.45 Aligned_cols=42 Identities=19% Similarity=0.230 Sum_probs=33.8
Q ss_pred HHHHHHHHHHHhCCCCEEEEcCCCCcchhhHHHHHHHHHHHc-CcEEEE
Q 018389 294 AVGGILAQRALADDIHDVVYTPRKGEKLEGKLQIVLQAIIDN-GVNVKV 341 (357)
Q Consensus 294 ~VGkvLAeRakekGI~~VVFDpR~GykYHGRVKAfADAaRE~-GL~FK~ 341 (357)
.++..|++.+.+.||+.|+-=| | +.+..|++++.+. ||.+.+
T Consensus 4 ~~a~~l~~~L~~~GV~~vfg~P--G----~~~~~l~~al~~~~~i~~v~ 46 (566)
T 2vbi_A 4 TVGMYLAERLVQIGLKHHFAVA--G----DYNLVLLDQLLLNKDMKQIY 46 (566)
T ss_dssp BHHHHHHHHHHHHTCSEEEECC--C----TTTHHHHHHHHTCTTSEEEE
T ss_pred CHHHHHHHHHHHcCCCEEEeCC--C----CccHHHHHHHhcCCCCeEEe
Confidence 3688999999999999976653 6 6778899999875 787755
No 156
>2zat_A Dehydrogenase/reductase SDR family member 4; alpha/beta, oxidoreductase; HET: NAP; 1.50A {Sus scrofa} PDB: 3o4r_A*
Probab=21.06 E-value=1.4e+02 Score=25.37 Aligned_cols=41 Identities=24% Similarity=0.377 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHHHhCCCCEEEEcCCCCcchhhHHHHHHHHHHHcCc
Q 018389 292 CAAVGGILAQRALADDIHDVVYTPRKGEKLEGKLQIVLQAIIDNGV 337 (357)
Q Consensus 292 Aa~VGkvLAeRakekGI~~VVFDpR~GykYHGRVKAfADAaRE~GL 337 (357)
+.-||+.||+++.+.|.+=++.+ |.. .+...+++.+++.|.
T Consensus 23 s~gIG~~ia~~l~~~G~~V~~~~-r~~----~~~~~~~~~l~~~~~ 63 (260)
T 2zat_A 23 TDGIGLAIARRLAQDGAHVVVSS-RKQ----ENVDRTVATLQGEGL 63 (260)
T ss_dssp SSHHHHHHHHHHHHTTCEEEEEE-SCH----HHHHHHHHHHHHTTC
T ss_pred CcHHHHHHHHHHHHCCCEEEEEe-CCH----HHHHHHHHHHHhcCC
Confidence 45789999999999998666677 654 345555666665553
No 157
>4acy_A Endo-alpha-mannosidase; hydrolase, endomannosidase, glycoside hydrolase, CAZY, enzyme-carbohydrate interaction, mannose; HET: MSE; 1.69A {Bacteroides thetaiotaomicron} PDB: 4acz_A 4ad0_A* 4acz_B
Probab=20.93 E-value=72 Score=31.00 Aligned_cols=43 Identities=12% Similarity=0.165 Sum_probs=35.4
Q ss_pred HHHHHhCCCCEEEEcCCCC--cchhhHHHHHHHHHHHcCcEEEEEe
Q 018389 300 AQRALADDIHDVVYTPRKG--EKLEGKLQIVLQAIIDNGVNVKVKL 343 (357)
Q Consensus 300 AeRakekGI~~VVFDpR~G--ykYHGRVKAfADAaRE~GL~FK~~l 343 (357)
.+.|+++||..++++ +.| ......+..+.++|.+.|++|-+-+
T Consensus 109 i~~ak~aGIDgfal~-w~~~~~~~d~~l~~~~~aA~~~g~k~~f~~ 153 (382)
T 4acy_A 109 IRMHIKANVGVLSVT-WWGESDYGNQSVSLLLDEAAKVGAKVCFHI 153 (382)
T ss_dssp HHHHHHHTEEEEEEE-ECGGGGTTCHHHHHHHHHHHHHTCEEEEEE
T ss_pred HHHHHHcCCCEEEEE-ecCCCCchHHHHHHHHHHHHHcCCEEEEEe
Confidence 567899999999988 543 3455789999999999999998775
No 158
>4e3z_A Putative oxidoreductase protein; PSI-biology, structural genomics, protein structure initiati nysgrc,oxidoreductase; 2.00A {Rhizobium etli}
Probab=20.89 E-value=1.7e+02 Score=25.07 Aligned_cols=46 Identities=15% Similarity=0.147 Sum_probs=31.6
Q ss_pred HHHHHHHHHHHHHHhCCCCEEEEcCCCCcchhhHHHHHHHHHHHcCcEEE
Q 018389 291 ACAAVGGILAQRALADDIHDVVYTPRKGEKLEGKLQIVLQAIIDNGVNVK 340 (357)
Q Consensus 291 AAa~VGkvLAeRakekGI~~VVFDpR~GykYHGRVKAfADAaRE~GL~FK 340 (357)
|+.-||+.||+++.+.|..-++.+.|.. .....+++.+.+.|-.+.
T Consensus 34 as~gIG~a~a~~l~~~G~~V~~~~~~~~----~~~~~~~~~~~~~~~~~~ 79 (272)
T 4e3z_A 34 GSRGIGAAVCRLAARQGWRVGVNYAANR----EAADAVVAAITESGGEAV 79 (272)
T ss_dssp TTSHHHHHHHHHHHHTTCEEEEEESSCH----HHHHHHHHHHHHTTCEEE
T ss_pred CCchHHHHHHHHHHHCCCEEEEEcCCCh----hHHHHHHHHHHhcCCcEE
Confidence 3457999999999999987655432543 556667777776665443
No 159
>1xg5_A ARPG836; short chain dehydrogenase, human, SGC, structural genomics, structural genomics consortium, oxidoreductase; HET: NAP; 1.53A {Homo sapiens} SCOP: c.2.1.2
Probab=20.89 E-value=80 Score=27.28 Aligned_cols=41 Identities=17% Similarity=0.285 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHHHHhCCCCEEEEcCCCCcchhhHHHHHHHHHHHcC
Q 018389 291 ACAAVGGILAQRALADDIHDVVYTPRKGEKLEGKLQIVLQAIIDNG 336 (357)
Q Consensus 291 AAa~VGkvLAeRakekGI~~VVFDpR~GykYHGRVKAfADAaRE~G 336 (357)
++.-||+.||+++.+.|..=++.+ |+. .++..+++.+++.|
T Consensus 40 asggIG~~la~~l~~~G~~V~~~~-r~~----~~~~~~~~~~~~~~ 80 (279)
T 1xg5_A 40 ASGGIGAAVARALVQQGLKVVGCA-RTV----GNIEELAAECKSAG 80 (279)
T ss_dssp TTSHHHHHHHHHHHHTTCEEEEEE-SCH----HHHHHHHHHHHHTT
T ss_pred CCchHHHHHHHHHHHCCCEEEEEE-CCh----HHHHHHHHHHHhcC
Confidence 346799999999999998766678 654 55666777777665
No 160
>2fqx_A Membrane lipoprotein TMPC; ABC transport system, ligand-binding protein, guanosine, TP0319, transport protein; HET: GMP; 1.70A {Treponema pallidum} PDB: 2fqw_A* 2fqy_A*
Probab=20.83 E-value=1.3e+02 Score=26.94 Aligned_cols=55 Identities=9% Similarity=-0.045 Sum_probs=38.8
Q ss_pred CHHHHHHHHHHHHHHHHhCCC-CEEEEcC-CCCcchhhHHHHHHHHHHHcCcEEEEEe
Q 018389 288 NATACAAVGGILAQRALADDI-HDVVYTP-RKGEKLEGKLQIVLQAIIDNGVNVKVKL 343 (357)
Q Consensus 288 NveAAa~VGkvLAeRakekGI-~~VVFDp-R~GykYHGRVKAfADAaRE~GL~FK~~l 343 (357)
+.+++..+| .+|..+.+.|- .+|.|=- .......-|+..|.+++++.|+.+++.+
T Consensus 109 ~~~~~~lag-~~a~~l~~~Gh~r~Ig~i~g~~~~~~~~r~~Gf~~~~~~~~~~~~~~~ 165 (318)
T 2fqx_A 109 QNEGSFLVG-VAAALKAKEAGKSAVGFIVGMELGMMPLFEAGFEAGVKAVDPDIQVVV 165 (318)
T ss_dssp HHHHHHHHH-HHHHHHHHHTTCCEEEEEESCCSTTTHHHHHHHHHHHHHHCTTCEEEE
T ss_pred hHHHHHHHH-HHHHHHhccCCCcEEEEEeCcccHHHHHHHHHHHHHHHHHCCCCEEEE
Confidence 556777777 66788888896 6666531 1123345789999999999998776654
No 161
>3ftp_A 3-oxoacyl-[acyl-carrier protein] reductase; ssgcid, 3-ketoacyl-(acyl-carrier- protein) reductase, oxidoreductase, structural genomics; 2.05A {Burkholderia pseudomallei}
Probab=20.78 E-value=1e+02 Score=27.00 Aligned_cols=41 Identities=10% Similarity=0.047 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHHHhCCCCEEEEcCCCCcchhhHHHHHHHHHHHcCc
Q 018389 292 CAAVGGILAQRALADDIHDVVYTPRKGEKLEGKLQIVLQAIIDNGV 337 (357)
Q Consensus 292 Aa~VGkvLAeRakekGI~~VVFDpR~GykYHGRVKAfADAaRE~GL 337 (357)
+.-||+.||+++.+.|..=++.+ |.. .....+++.+++.|.
T Consensus 37 s~GIG~aia~~la~~G~~V~~~~-r~~----~~~~~~~~~~~~~~~ 77 (270)
T 3ftp_A 37 SRGIGRAIALELARRGAMVIGTA-TTE----AGAEGIGAAFKQAGL 77 (270)
T ss_dssp SSHHHHHHHHHHHHTTCEEEEEE-SSH----HHHHHHHHHHHHHTC
T ss_pred CCHHHHHHHHHHHHCCCEEEEEe-CCH----HHHHHHHHHHHhcCC
Confidence 45799999999999998766777 553 456666666666554
No 162
>2ews_A Pantothenate kinase; PANK, structural genomics, structural genomics consortium, S transferase; HET: ANP; 2.05A {Staphylococcus aureus subsp} SCOP: c.55.1.14
Probab=20.68 E-value=2.2e+02 Score=26.43 Aligned_cols=46 Identities=13% Similarity=0.012 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHhCCCCEEEEcCCCCcc--hhhHHHHHHHHHHHcCcEEEE
Q 018389 294 AVGGILAQRALADDIHDVVYTPRKGEK--LEGKLQIVLQAIIDNGVNVKV 341 (357)
Q Consensus 294 ~VGkvLAeRakekGI~~VVFDpR~Gyk--YHGRVKAfADAaRE~GL~FK~ 341 (357)
+||.+....|+..+|..|+|- +|+. ..+-+++|.+.+...|.++.|
T Consensus 223 ~I~~la~~~a~~~~i~~Vvf~--Gg~l~~n~~l~~~l~~~~~~~~~~~~~ 270 (287)
T 2ews_A 223 VVTTMAITVAREFKTENIVYI--GSSFHNNALLRKVVEDYTVLRGCKPYY 270 (287)
T ss_dssp HHHHHHHHHHHHTTCCEEEEE--SGGGTTCHHHHHHHHHHHHHTTCEEEE
T ss_pred HHHHHHHHHHHhCCCCeEEEe--CCchhcCHHHHHHHHHHHhhCCceEEE
Confidence 333333334567999999999 7743 347788888877777776654
No 163
>1zh8_A Oxidoreductase; TM0312, structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI; HET: MSE NAP; 2.50A {Thermotoga maritima} SCOP: c.2.1.3 d.81.1.5
Probab=20.66 E-value=1.6e+02 Score=26.71 Aligned_cols=33 Identities=0% Similarity=-0.128 Sum_probs=19.2
Q ss_pred HHHHHHhCCCCEEE-EcCCCCcchhhHHHHHHHHHHHc
Q 018389 299 LAQRALADDIHDVV-YTPRKGEKLEGKLQIVLQAIIDN 335 (357)
Q Consensus 299 LAeRakekGI~~VV-FDpR~GykYHGRVKAfADAaRE~ 335 (357)
|.+.|.+.|+.-++ |. ++|+.-+..+.+.++++
T Consensus 125 l~~~a~~~g~~~~v~~~----~R~~p~~~~~k~~i~~g 158 (340)
T 1zh8_A 125 VVELSEKSEKTVYIAEN----FRHVPAFWKAKELVESG 158 (340)
T ss_dssp HHHHHHHCSSCEEEECG----GGGCHHHHHHHHHHHTT
T ss_pred HHHHHHHcCCeEEEEec----ccCCHHHHHHHHHHhcC
Confidence 34456666765433 33 56666666666666554
No 164
>2isw_A Putative fructose-1,6-bisphosphate aldolase; class II fructose-1,6-bisphosphate aldolase, glycolytic pathway, giardia lamblia, drug target; HET: PGH; 1.75A {Giardia intestinalis} PDB: 2isv_A* 3ohi_A* 3gay_A* 3gak_A* 3gb6_A*
Probab=20.59 E-value=1.8e+02 Score=27.96 Aligned_cols=44 Identities=14% Similarity=0.123 Sum_probs=36.0
Q ss_pred HHHHHHhCCCCEEEEcCCCCcchhh---HHHHHHHHHHHcCcEEEEEe
Q 018389 299 LAQRALADDIHDVVYTPRKGEKLEG---KLQIVLQAIIDNGVNVKVKL 343 (357)
Q Consensus 299 LAeRakekGI~~VVFDpR~GykYHG---RVKAfADAaRE~GL~FK~~l 343 (357)
+..+|++.|.+.|.|| -+-..|.. ..+.+++-+...|+.+.-.|
T Consensus 90 ~i~~ai~~GFtSVMiD-gS~~p~eENi~~Tk~vv~~ah~~gvsVEaEL 136 (323)
T 2isw_A 90 SVKMAIDLGFSSVMID-ASHHPFDENVRITKEVVAYAHARSVSVEAEL 136 (323)
T ss_dssp HHHHHHHTTCSEEEEC-CTTSCHHHHHHHHHHHHHHHHTTTCEEEEEE
T ss_pred HHHHHHHcCCCeEEec-CCCCCHHHHHHHHHHHHHHHHHcCCeEEEEe
Confidence 4779999999999999 67778874 45678888889999887655
No 165
>2iks_A DNA-binding transcriptional dual regulator; escherichia coli structural genomics, PSI-2, protein structure initiative; 1.85A {Escherichia coli}
Probab=20.59 E-value=1.2e+02 Score=25.88 Aligned_cols=44 Identities=18% Similarity=-0.022 Sum_probs=29.7
Q ss_pred HHHHHHHHHhCCCCEEEEc--CCCCcchhhHHHHHHHHHHHcCcEE
Q 018389 296 GGILAQRALADDIHDVVYT--PRKGEKLEGKLQIVLQAIIDNGVNV 339 (357)
Q Consensus 296 GkvLAeRakekGI~~VVFD--pR~GykYHGRVKAfADAaRE~GL~F 339 (357)
|..+++.+.+.|-.+|.|= +....-...|...|.+++++.|+..
T Consensus 126 ~~~a~~~L~~~G~~~I~~i~~~~~~~~~~~R~~Gf~~~l~~~g~~~ 171 (293)
T 2iks_A 126 AEMLAEELRKFPAETVLYLGALPELSVSFLREQGFRTAWKDDPREV 171 (293)
T ss_dssp HHHHHHHHHTSCCSSEEEEEECTTSHHHHHHHHHHHHHHTTCCCCE
T ss_pred HHHHHHHHHHCCCCEEEEEecCcccccHHHHHHHHHHHHHHcCCCc
Confidence 4455666666787777543 1222234589999999999999843
No 166
>4imr_A 3-oxoacyl-(acyl-carrier-protein) reductase; oxidoreductase, nicotinamide adenine dinucleotide phosphate, structural genomics; HET: NAP; 1.96A {Agrobacterium fabrum}
Probab=20.58 E-value=1.2e+02 Score=26.55 Aligned_cols=41 Identities=24% Similarity=0.302 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHHHhCCCCEEEEcCCCCcchhhHHHHHHHHHHHcCc
Q 018389 292 CAAVGGILAQRALADDIHDVVYTPRKGEKLEGKLQIVLQAIIDNGV 337 (357)
Q Consensus 292 Aa~VGkvLAeRakekGI~~VVFDpR~GykYHGRVKAfADAaRE~GL 337 (357)
+.-||+.||+++.+.|..=++.+ |+. .+...+++.+++.|-
T Consensus 42 s~GIG~aia~~la~~G~~V~~~~-r~~----~~~~~~~~~~~~~~~ 82 (275)
T 4imr_A 42 SRGIGAAIAEGLAGAGAHVILHG-VKP----GSTAAVQQRIIASGG 82 (275)
T ss_dssp SSHHHHHHHHHHHHTTCEEEEEE-SST----TTTHHHHHHHHHTTC
T ss_pred CCHHHHHHHHHHHHCCCEEEEEc-CCH----HHHHHHHHHHHhcCC
Confidence 34699999999999998766778 554 344555666655553
No 167
>3e82_A Putative oxidoreductase; NAD, GFO/IDH/MOCA family, PSI-2, NYSGXRC, 11136F, structural genomics, protein structure initiative; 2.04A {Klebsiella pneumoniae subsp}
Probab=20.56 E-value=1.2e+02 Score=27.88 Aligned_cols=35 Identities=14% Similarity=0.046 Sum_probs=20.0
Q ss_pred HHHHHHHhCCCCEEEEcCCCCcchhhHHHHHHHHHHHc
Q 018389 298 ILAQRALADDIHDVVYTPRKGEKLEGKLQIVLQAIIDN 335 (357)
Q Consensus 298 vLAeRakekGI~~VVFDpR~GykYHGRVKAfADAaRE~ 335 (357)
.|++.|.+.|+.-++.- .++|+.-+..+.+.++++
T Consensus 109 ~l~~~a~~~g~~~~v~~---~~r~~p~~~~~~~~i~~g 143 (364)
T 3e82_A 109 ELIALAEEKQRLLSVFH---NRRWDSDYLGIRQVIEQG 143 (364)
T ss_dssp HHHHHHHHTTCCEEECC---CCTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHhCCeEEEEe---ecccCHHHHHHHHHHHcC
Confidence 34555666776654433 255666666666666544
No 168
>2xn2_A Alpha-galactosidase; hydrolase, glycosidase; HET: SME GLA IMD; 1.58A {Lactobacillus acidophilus ncfm} PDB: 2xn1_A* 2xn0_A*
Probab=20.54 E-value=1.3e+02 Score=31.46 Aligned_cols=45 Identities=9% Similarity=0.069 Sum_probs=34.8
Q ss_pred HHHHHHhCCCCEEEEcCCCCcc------------------hhhHHHHHHHHHHHcCcEEEEEee
Q 018389 299 LAQRALADDIHDVVYTPRKGEK------------------LEGKLQIVLQAIIDNGVNVKVKLK 344 (357)
Q Consensus 299 LAeRakekGI~~VVFDpR~Gyk------------------YHGRVKAfADAaRE~GL~FK~~lk 344 (357)
+|+.+++.|+.-|++| -+.+. +-+-+++|++.+++.||+|.+.+-
T Consensus 355 ~ad~~~~~G~~~~viD-DGW~~~r~~~~~~~Gd~~~d~~kFP~Glk~lv~~ih~~Glk~GlW~~ 417 (732)
T 2xn2_A 355 IVDKAKKLGLEMFVLD-DGWFGHRDDDNSSLGDWKVYKKKFPNGLGHFADYVHEQGLKFGLWFE 417 (732)
T ss_dssp HHHHHHHTTCCEEEEC-SSSBTTCSSTTSCTTCCSBCTTTCTTCHHHHHHHHHHTTCEEEEEEC
T ss_pred HHHHHHHcCCcEEEEc-CcccccCCCCccccCceeeCchhcCccHHHHHHHHHHcCCEEEEEeC
Confidence 5778899999999988 23321 211399999999999999999863
No 169
>3v2g_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, protein structure initiati nysgrc; 2.30A {Sinorhizobium meliloti}
Probab=20.52 E-value=1.5e+02 Score=25.92 Aligned_cols=43 Identities=16% Similarity=0.197 Sum_probs=31.5
Q ss_pred HHHHHHHHHHHHHhCCCCEEEEcCCCCcchhhHHHHHHHHHHHcCcE
Q 018389 292 CAAVGGILAQRALADDIHDVVYTPRKGEKLEGKLQIVLQAIIDNGVN 338 (357)
Q Consensus 292 Aa~VGkvLAeRakekGI~~VVFDpR~GykYHGRVKAfADAaRE~GL~ 338 (357)
+.-||+.||+++.+.|..-++.+.+. ..+..++++.+++.|-.
T Consensus 40 s~GIG~aia~~la~~G~~V~~~~~~~----~~~~~~~~~~l~~~~~~ 82 (271)
T 3v2g_A 40 SRGIGAAIAKRLALEGAAVALTYVNA----AERAQAVVSEIEQAGGR 82 (271)
T ss_dssp TSHHHHHHHHHHHHTTCEEEEEESSC----HHHHHHHHHHHHHTTCC
T ss_pred CcHHHHHHHHHHHHCCCEEEEEeCCC----HHHHHHHHHHHHhcCCc
Confidence 45799999999999998876766333 25667777777776644
No 170
>1ozh_A ALS, acetolactate synthase, catabolic; acetohydroxyacid synthase, thiamin diphosphate, lyase; HET: PGE HE3; 2.00A {Klebsiella pneumoniae} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1ozg_A* 1ozf_A*
Probab=20.51 E-value=78 Score=31.18 Aligned_cols=43 Identities=16% Similarity=0.352 Sum_probs=34.2
Q ss_pred HHHHHHHHHHHhCCCCEEEEcCCCCcchhhHHHHHHHHHHHcCcEEEEE
Q 018389 294 AVGGILAQRALADDIHDVVYTPRKGEKLEGKLQIVLQAIIDNGVNVKVK 342 (357)
Q Consensus 294 ~VGkvLAeRakekGI~~VVFDpR~GykYHGRVKAfADAaRE~GL~FK~~ 342 (357)
.++..|++.+.+.||+.|+-=| | +++-.|++++.+.||.+.+-
T Consensus 12 ~~a~~l~~~L~~~GV~~vfg~P--G----~~~~~l~~al~~~~i~~v~~ 54 (566)
T 1ozh_A 12 HGADLVVSQLEAQGVRQVFGIP--G----AKIDKVFDSLLDSSIRIIPV 54 (566)
T ss_dssp CHHHHHHHHHHHHTCCEEEEEC--C----TTTHHHHHHGGGSSSEEEEC
T ss_pred cHHHHHHHHHHHCCCCEEEEcC--C----CchHHHHHHHHhCCCcEEEe
Confidence 4689999999999999977664 6 66778888887777877543
No 171
>2fn9_A Ribose ABC transporter, periplasmic ribose-bindin; RBP, ribose binding protein, periplasmic binding protein, thermophilic proteins; 1.40A {Thermotoga maritima} PDB: 2fn8_A*
Probab=20.49 E-value=1.2e+02 Score=25.54 Aligned_cols=53 Identities=6% Similarity=-0.074 Sum_probs=33.7
Q ss_pred CHHHHHHHHHHHHHHHHhC--CCCE--EEE--cCCCCcchhhHHHHHHHHHHHc-CcEEE
Q 018389 288 NATACAAVGGILAQRALAD--DIHD--VVY--TPRKGEKLEGKLQIVLQAIIDN-GVNVK 340 (357)
Q Consensus 288 NveAAa~VGkvLAeRakek--GI~~--VVF--DpR~GykYHGRVKAfADAaRE~-GL~FK 340 (357)
|..++..+++.|++++-.. |... |+| .+....-...|.+.|.+++++. |+.+.
T Consensus 107 ~~~~~~~~~~~L~~~~g~~~~G~r~i~i~~l~g~~~~~~~~~R~~gf~~~l~~~~g~~~~ 166 (290)
T 2fn9_A 107 NYYGGVLAGEYFVKFLKEKYPDAKEIPYAELLGILSAQPTWDRSNGFHSVVDQYPEFKMV 166 (290)
T ss_dssp HHHHHHHHHHHHHHHHHHHCSSCSCEEEEEEECCTTCHHHHHHHHHHHHHHTTSTTEEEE
T ss_pred HHHHHHHHHHHHHHHhcccCCcccceeEEEEEcCCCCchHHHHHHHHHHHHHhCCCCEEE
Confidence 5566677777766653211 6666 543 2112223458999999999999 98763
No 172
>1fmc_A 7 alpha-hydroxysteroid dehydrogenase; short-chain dehydrogenase/reductase, bIle acid catabolism, oxidoreductase; HET: CHO NAD; 1.80A {Escherichia coli} SCOP: c.2.1.2 PDB: 1ahi_A* 1ahh_A*
Probab=20.49 E-value=1.5e+02 Score=24.70 Aligned_cols=41 Identities=22% Similarity=0.155 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHHHHhCCCCEEEEcCCCCcchhhHHHHHHHHHHHcC
Q 018389 291 ACAAVGGILAQRALADDIHDVVYTPRKGEKLEGKLQIVLQAIIDNG 336 (357)
Q Consensus 291 AAa~VGkvLAeRakekGI~~VVFDpR~GykYHGRVKAfADAaRE~G 336 (357)
++.-||+.||+++.+.|..=++.+ |+. .+...+++.+++.|
T Consensus 19 asggiG~~la~~l~~~G~~V~~~~-r~~----~~~~~~~~~~~~~~ 59 (255)
T 1fmc_A 19 AGAGIGKEIAITFATAGASVVVSD-INA----DAANHVVDEIQQLG 59 (255)
T ss_dssp TTSHHHHHHHHHHHTTTCEEEEEE-SCH----HHHHHHHHHHHHTT
T ss_pred CccHHHHHHHHHHHHCCCEEEEEc-CCH----HHHHHHHHHHHHhC
Confidence 346799999999999997766678 553 44555666665544
No 173
>3bil_A Probable LACI-family transcriptional regulator; structural genomics, unknown function, PSI-2, protein structure initiative; 2.50A {Corynebacterium glutamicum atcc 13032}
Probab=20.45 E-value=1.5e+02 Score=26.37 Aligned_cols=47 Identities=11% Similarity=0.060 Sum_probs=30.8
Q ss_pred CHHHHHHHHHHHHHHHHhCCCCEEEEcC--CCCcchhhHHHHHHHHHHHcCcE
Q 018389 288 NATACAAVGGILAQRALADDIHDVVYTP--RKGEKLEGKLQIVLQAIIDNGVN 338 (357)
Q Consensus 288 NveAAa~VGkvLAeRakekGI~~VVFDp--R~GykYHGRVKAfADAaRE~GL~ 338 (357)
|..++..+++. +.+.|-..|.|=. ....-...|+..|.+++++.|+.
T Consensus 168 ~~~~~~~a~~~----L~~~G~~~I~~i~~~~~~~~~~~R~~Gf~~al~~~g~~ 216 (348)
T 3bil_A 168 PQPGIAAAVEL----LAHNNALPIGYLSGPMDTSTGRERLEDFKAACANSKIG 216 (348)
T ss_dssp CHHHHHHHHHH----HHHTTCCSEEEECCCTTSHHHHHHHHHHHHHHHHTTCC
T ss_pred hHHHHHHHHHH----HHHCCCCeEEEEeCCCCCccHHHHHHHHHHHHHHcCcC
Confidence 55555555544 4456888876541 11223457999999999999983
No 174
>1xq1_A Putative tropinone reducatse; structural genomics, protein structure initiative, CESG, AT1 reductively methylated protein; 2.10A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 2q45_A
Probab=20.40 E-value=1.5e+02 Score=25.06 Aligned_cols=43 Identities=12% Similarity=0.075 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHHHHhCCCCEEEEcCCCCcchhhHHHHHHHHHHHcCcE
Q 018389 291 ACAAVGGILAQRALADDIHDVVYTPRKGEKLEGKLQIVLQAIIDNGVN 338 (357)
Q Consensus 291 AAa~VGkvLAeRakekGI~~VVFDpR~GykYHGRVKAfADAaRE~GL~ 338 (357)
++.-||+.||+++.+.|..=++.+ |+. .+...+++.+++.|..
T Consensus 22 asggiG~~la~~l~~~G~~V~~~~-r~~----~~~~~~~~~~~~~~~~ 64 (266)
T 1xq1_A 22 GTKGIGHAIVEEFAGFGAVIHTCA-RNE----YELNECLSKWQKKGFQ 64 (266)
T ss_dssp TTSHHHHHHHHHHHHTTCEEEEEE-SCH----HHHHHHHHHHHHTTCC
T ss_pred CCCHHHHHHHHHHHHCCCEEEEEe-CCH----HHHHHHHHHHHhcCCe
Confidence 345799999999999997656677 653 3455566666655543
No 175
>3uug_A Multiple sugar-binding periplasmic receptor CHVE; periplasmic binding protein, sugar-binding protein, sugar binding protein; HET: BDP; 1.75A {Agrobacterium tumefaciens} PDB: 3urm_A*
Probab=20.39 E-value=1.5e+02 Score=25.55 Aligned_cols=48 Identities=2% Similarity=-0.134 Sum_probs=34.3
Q ss_pred CHHHHHHHHHHHHHHHHh---CCCCEEEEc--CCCCcchhhHHHHHHHHHHHc
Q 018389 288 NATACAAVGGILAQRALA---DDIHDVVYT--PRKGEKLEGKLQIVLQAIIDN 335 (357)
Q Consensus 288 NveAAa~VGkvLAeRake---kGI~~VVFD--pR~GykYHGRVKAfADAaRE~ 335 (357)
|..++..+++.|++.+.. .|-..|+|= +.+..-...|...|.+++.+.
T Consensus 108 ~~~~g~~a~~~l~~~~~~~~~~G~~~i~~i~g~~~~~~~~~R~~Gf~~al~~~ 160 (330)
T 3uug_A 108 NFQVGVLQATSITDKLGLKDGKGPFNIELFGGSPDDNNAFFFYDGAMSVLKPY 160 (330)
T ss_dssp HHHHHHHHHHHHHHHHTGGGTCCCEEEEECBCCTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcccCCCCceEEEEEECCCCCchHHHHHHHHHHHHHhc
Confidence 667777777777777766 488888774 122233457899999999986
No 176
>2yfo_A Alpha-galactosidase-sucrose kinase agask; hydrolase; HET: GLA GAL; 1.35A {Ruminococcus gnavus E1} PDB: 2yfn_A*
Probab=20.39 E-value=1e+02 Score=32.12 Aligned_cols=45 Identities=22% Similarity=0.209 Sum_probs=35.0
Q ss_pred HHHHHHhCCCCEEEEcCCCCcc--------------hhhH----HHHHHHHHHHcCcEEEEEee
Q 018389 299 LAQRALADDIHDVVYTPRKGEK--------------LEGK----LQIVLQAIIDNGVNVKVKLK 344 (357)
Q Consensus 299 LAeRakekGI~~VVFDpR~Gyk--------------YHGR----VKAfADAaRE~GL~FK~~lk 344 (357)
+|+.+++.||.-|++| -+.+. -.+| ++++++.+.+.|++|.+-+-
T Consensus 351 ~ad~~~~~G~~~~viD-DgW~~~r~~~~~~~Gdw~~d~~kFP~Glk~lvd~ih~~Glk~GlW~~ 413 (720)
T 2yfo_A 351 LAKEAASLGIDMVVMD-DGWFGKRNDDNSSLGDWQVNETKLGGSLAELITRVHEQGMKFGIWIE 413 (720)
T ss_dssp HHHHHHHHTCCEEEEC-SSSBTTCSSTTSCTTCCSBCHHHHTSCHHHHHHHHHHTTCEEEEEEC
T ss_pred HHHHHHHcCCcEEEEC-cccccCCCcccccCCCCeeChhhcCccHHHHHHHHHHCCCEEEEEec
Confidence 6788999999999998 23321 0122 99999999999999999874
No 177
>1rvg_A Fructose-1,6-bisphosphate aldolase; class II aldolase, metal-depdendent aldolase, lyase; 2.00A {Thermus aquaticus} SCOP: c.1.10.2 PDB: 1rv8_A 2fjk_A*
Probab=20.37 E-value=2.1e+02 Score=27.29 Aligned_cols=44 Identities=27% Similarity=0.345 Sum_probs=36.4
Q ss_pred HHHHHHhCCCCEEEEcCCCCcchhh---HHHHHHHHHHHcCcEEEEEe
Q 018389 299 LAQRALADDIHDVVYTPRKGEKLEG---KLQIVLQAIIDNGVNVKVKL 343 (357)
Q Consensus 299 LAeRakekGI~~VVFDpR~GykYHG---RVKAfADAaRE~GL~FK~~l 343 (357)
+..+|++.|.+.|.|| -+...|.. ..+.+++-+...|+.+...|
T Consensus 87 ~~~~ai~~GFtSVMiD-gS~~p~eENi~~Tk~vv~~ah~~gvsVEaEL 133 (305)
T 1rvg_A 87 SVLRALRAGFTSVMID-KSHEDFETNVRETRRVVEAAHAVGVTVEAEL 133 (305)
T ss_dssp HHHHHHHTTCSEEEEC-CTTSCHHHHHHHHHHHHHHHHHTTCEEEEEE
T ss_pred HHHHHHHcCCCeeeeC-CCCCCHHHHHHHHHHHHHHHHHcCCEEEEEE
Confidence 4668999999999999 67778874 45678889999999888766
No 178
>4fb5_A Probable oxidoreductase protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, GFO/IDH/MOCA family; 2.61A {Rhizobium etli}
Probab=20.25 E-value=1.3e+02 Score=26.85 Aligned_cols=42 Identities=5% Similarity=-0.108 Sum_probs=25.4
Q ss_pred CCHHHHHHHHHHHHHHHHhCCCCEEEEcCCCCcchhhHHHHHHHHHHHc
Q 018389 287 RNATACAAVGGILAQRALADDIHDVVYTPRKGEKLEGKLQIVLQAIIDN 335 (357)
Q Consensus 287 ~NveAAa~VGkvLAeRakekGI~~VVFDpR~GykYHGRVKAfADAaRE~ 335 (357)
.+.+.|. .|.+.|.+.|+.-++-- -++|+..+..+.+-++++
T Consensus 129 ~~~~ea~----~l~~~a~~~g~~l~vg~---~~R~~p~~~~~k~~i~~G 170 (393)
T 4fb5_A 129 PAYADAE----RMLATAERSGKVAALGY---NYIQNPVMRHIRKLVGDG 170 (393)
T ss_dssp SSHHHHH----HHHHHHHHSSSCEEECC---GGGGCHHHHHHHHHHHTT
T ss_pred ccHHHHH----HhhhhHHhcCCcccccc---ccccChHHHHHHHHHHcC
Confidence 4555544 34556777787654422 267777777777766653
No 179
>1geg_A Acetoin reductase; SDR family, oxidoreductase; HET: GLC NAD; 1.70A {Klebsiella pneumoniae} SCOP: c.2.1.2
Probab=20.23 E-value=1.5e+02 Score=25.20 Aligned_cols=40 Identities=18% Similarity=0.233 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHHHhCCCCEEEEcCCCCcchhhHHHHHHHHHHHcC
Q 018389 292 CAAVGGILAQRALADDIHDVVYTPRKGEKLEGKLQIVLQAIIDNG 336 (357)
Q Consensus 292 Aa~VGkvLAeRakekGI~~VVFDpR~GykYHGRVKAfADAaRE~G 336 (357)
+.-||+.||+++.+.|.+=++.+ |+. .+...+++.+++.|
T Consensus 11 s~gIG~~ia~~l~~~G~~V~~~~-r~~----~~~~~~~~~~~~~~ 50 (256)
T 1geg_A 11 GQGIGKAIALRLVKDGFAVAIAD-YND----ATAKAVASEINQAG 50 (256)
T ss_dssp TSHHHHHHHHHHHHTTCEEEEEE-SCH----HHHHHHHHHHHHTT
T ss_pred CChHHHHHHHHHHHCCCEEEEEe-CCH----HHHHHHHHHHHhcC
Confidence 35789999999999998656677 553 45556666666555
No 180
>2vk8_A Pyruvate decarboxylase isozyme 1; asymmetric active sites, phenylalanine catabolism, tryptophan catabolism, thiamine pyrophosphate; HET: TPP; 1.42A {Saccharomyces cerevisiae} PDB: 1qpb_A* 2vk1_A* 2w93_A* 1pyd_A* 1pvd_A* 2vk4_A* 2vjy_A* 2g1i_A*
Probab=20.13 E-value=82 Score=30.80 Aligned_cols=42 Identities=21% Similarity=0.244 Sum_probs=33.1
Q ss_pred HHHHHHHHHHHhCCCCEEEEcCCCCcchhhHHHHHHHHHHHc-CcEEEE
Q 018389 294 AVGGILAQRALADDIHDVVYTPRKGEKLEGKLQIVLQAIIDN-GVNVKV 341 (357)
Q Consensus 294 ~VGkvLAeRakekGI~~VVFDpR~GykYHGRVKAfADAaRE~-GL~FK~ 341 (357)
.++..|++.+.+.||+.|+-=| | +.+-.|++++.+. ||.+.+
T Consensus 5 ~~a~~l~~~L~~~GV~~vfg~P--G----~~~~~l~~al~~~~~i~~v~ 47 (563)
T 2vk8_A 5 TLGKYLFERLKQVNVNTVFGLP--G----DFNLSLLDKIYEVEGMRWAG 47 (563)
T ss_dssp EHHHHHHHHHHHTTCCEEEECC--C----GGGHHHHHGGGGSTTCEECC
T ss_pred CHHHHHHHHHHHcCCCEEEEcC--C----cchHHHHHHHhhcCCceEEc
Confidence 3689999999999999976653 6 6777899998765 676643
Done!