Query 018391
Match_columns 356
No_of_seqs 160 out of 1546
Neff 7.1
Searched_HMMs 29240
Date Mon Mar 25 14:31:42 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018391.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/018391hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3fky_A Glutamine synthetase; b 100.0 1.4E-97 5E-102 730.6 28.5 348 2-356 10-357 (370)
2 2d3a_A Glutamine synthetase; l 100.0 1.1E-95 4E-100 714.1 30.0 356 1-356 1-356 (356)
3 2ojw_A Glutamine synthetase; a 100.0 3.9E-93 1.3E-97 702.1 29.4 349 2-356 31-383 (384)
4 3qaj_A Glutamine synthetase; A 100.0 4.2E-90 1.4E-94 691.5 16.8 325 16-355 16-358 (444)
5 3ng0_A Glutamine synthetase; G 100.0 1.8E-88 6.1E-93 685.4 27.5 331 16-355 15-386 (473)
6 4hpp_A Probable glutamine synt 100.0 1.3E-87 4.6E-92 672.8 23.1 320 15-355 4-357 (443)
7 4acf_A Glutamine synthetase 1; 100.0 3.5E-85 1.2E-89 664.3 25.8 331 16-355 24-399 (486)
8 1f52_A Glutamine synthetase; A 100.0 5.5E-85 1.9E-89 659.8 25.0 330 16-355 12-382 (468)
9 2j9i_A Glutamate-ammonia ligas 100.0 4.2E-77 1.4E-81 594.6 8.4 307 16-355 12-344 (421)
10 3o6x_A Glutamine synthetase; t 100.0 6.1E-60 2.1E-64 486.7 12.1 282 54-355 127-500 (729)
11 1r8g_A Hypothetical protein YB 98.2 3.2E-05 1.1E-09 75.3 15.0 129 123-288 11-168 (372)
12 2gwd_A Glutamate cysteine liga 98.0 0.00012 4.1E-09 73.2 15.8 151 106-288 17-213 (449)
13 3ln6_A Glutathione biosynthesi 88.7 1.3 4.4E-05 46.8 9.1 98 188-286 54-193 (750)
14 2fao_A Probable ATP-dependent 84.3 10 0.00035 35.5 11.8 125 179-319 111-242 (309)
15 3ln7_A Glutathione biosynthesi 83.6 3.7 0.00013 43.3 9.4 38 188-225 53-91 (757)
16 1nxi_A Conserved hypothetical 80.2 4.2 0.00014 33.3 6.6 89 111-230 22-113 (132)
17 1zpv_A ACT domain protein; str 75.8 3 0.0001 30.9 4.2 66 170-237 17-82 (91)
18 1va6_A Glutamate--cysteine lig 66.0 14 0.00047 37.2 7.6 37 189-225 57-94 (518)
19 2iru_A Putative DNA ligase-lik 63.0 25 0.00087 32.8 8.3 125 179-319 105-244 (303)
20 3nzt_A Glutamate--cysteine lig 57.4 19 0.00066 36.2 6.9 19 121-139 30-48 (525)
21 1u8s_A Glycine cleavage system 49.9 22 0.00074 30.2 5.2 77 169-251 104-189 (192)
22 3ose_A Serine/threonine-protei 48.4 47 0.0016 26.4 6.6 62 169-230 40-120 (120)
23 1v5s_A MAP/microtubule affinit 44.6 51 0.0018 26.6 6.3 62 169-230 40-120 (126)
24 2nyi_A Unknown protein; protei 38.5 39 0.0013 28.8 5.1 67 169-238 104-176 (195)
25 3tc3_A UV damage endonuclease; 34.4 74 0.0025 29.7 6.5 63 172-240 62-126 (310)
26 1u8s_A Glycine cleavage system 24.1 3.1E+02 0.01 22.7 9.3 66 170-238 18-83 (192)
27 1q02_A Sequestosome 1; helical 21.3 43 0.0015 22.8 1.7 23 99-123 1-23 (52)
No 1
>3fky_A Glutamine synthetase; beta-grAsp, catalytic domain, acetylation, cytoplasm, ligase, UBL conjugation; HET: FLC; 2.95A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.4e-97 Score=730.55 Aligned_cols=348 Identities=60% Similarity=1.066 Sum_probs=296.6
Q ss_pred hhhHHhhcCCCCCCCcEEEEEEEEEeCCCCcceeeEEeCCCCCCCCCCCCcccccCCCCCCCCCCCccEEEEeeeceecC
Q 018391 2 SLLNDLLNLNLSESTEKVIAEYVWIGGSGMDLRSKARTLPAPTTDPTKLPKWNYDGSSTNQAPGDDSEVILYPQTVFKDP 81 (356)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~v~~~~~dg~G~~~rgK~~~~~~~~~~~~~~~~~~~dgs~~g~~~~~~~D~~l~PDt~~~~P 81 (356)
.+|.+|++| ++.++++|+++|+|+.| .+|||+++++.+.+.++++++|+||||++++.+++++|++|+|||++++|
T Consensus 10 ~~~~~~~~l---~~~~i~~v~~~~~D~~G-~lR~K~~~~~~~~~~~~~~~~~~fDGss~g~~~~~~sD~~l~Pdt~~~~P 85 (370)
T 3fky_A 10 QILQKYLEL---DQRGRIIAEYVWIDGTG-NLRSKGRTLKKRITSIDQLPEWNFDGSSTNQAPGHDSDIYLKPVAYYPDP 85 (370)
T ss_dssp --------------CCCEEEEEEEECSSS-CEEEEEEEESSCCCSGGGSCCEEECGGGTTSSCCCC--EEEEEEEEEECT
T ss_pred HHHHHHhCc---ccCCeEEEEEEEEcCCC-CeEEEEEECccccchHHhCCccccCCcccccccCCCCCeeEeeeEEEEcC
Confidence 478999999 78999999999999999 99999999998888888888999999999998889999999999999999
Q ss_pred CCCCCeEEEEEEeecCCCccCCCChHHHHHHHHcCcccCCCcceEeeeeeEEEeccCCCCCCCCCCCCCCCCCCCCcccc
Q 018391 82 FRRGNNILVMCDAYTPAGEPIPTNKRFNAAKVFGHPDVVAEEPWYGIEQEYTLLQKDINWPLGWPVGGYPGPQGPYYCGV 161 (356)
Q Consensus 82 w~~~~~a~V~cd~~~~~G~P~~~~PR~~Lkr~~~~l~~~G~~~~~g~E~EF~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (356)
|+++++++|+||++++||+|++.|||++|||++++++ |+++++|+|+|||||+.+. .+.+++.++.|.++++||+..
T Consensus 86 w~~~~~a~vlcd~~~~dG~P~~~~pR~iLkr~~~~~~--g~~~~~G~E~EF~Lf~~~~-~~~~~p~~~~p~~~g~yy~~~ 162 (370)
T 3fky_A 86 FRRGDNIVVLAACYNNDGTPNKFNHRHEAAKLFAAHK--DEEIWFGLEQEYTLFDMYD-DVYGWPKGGYPAPQGPYYCGV 162 (370)
T ss_dssp TTCTTCEEEEEEEECTTSSBCTTCCHHHHHHHHHHTG--GGCCEEEEEEEEEEECTTS-SBTTCCTTSBCSCSSSCTTCC
T ss_pred CCCCCeEEEEEEEEcCCCCCCCCCHHHHHHHHHHHhc--CCCceEEeeeEEEEEccCC-CcccCCCCCccCCCCcccccc
Confidence 9997799999999999999999999999999999877 9999999999999998764 244566556788888998876
Q ss_pred ccchhhHHHHHHHHHHHHHHcCceeeeecCCCCCCcEEEEeCCCchhhhhHHHHHHHHHHHHHHHHcCceEEecccccCC
Q 018391 162 GADKALGRDIVNSHYKACLYAGINISGINGEVMPGQWEFQVGPCVGISSGDQLWMARYILERITEIAGVVLSFDPKPIKG 241 (356)
Q Consensus 162 ~~~~~~~~~~~~~l~~~l~~~Gi~ve~~~~E~gpGQ~Ei~l~~~~~l~aaD~~~~~k~~ik~vA~~~Gl~aTFmpKP~~~ 241 (356)
+....+.++++++++++|+++||+||++|||+|||||||++.|.++|++||++++||++||+||++||++|||||||+.+
T Consensus 163 ~~~~~~~~~i~~~i~~~l~~~Gi~ve~~h~E~~pGQ~Ei~~~~~~~l~aAD~~~~~K~~vk~vA~~~G~~ATFmpKP~~g 242 (370)
T 3fky_A 163 GAGKVYARDMIEAHYRACLYAGLEISGINAEVMPSQWEFQVGPCTGIDMGDQLWMARYFLHRVAEEFGIKISFHPKPLKG 242 (370)
T ss_dssp STTTCSCHHHHHHHHHHHHHHTCCEEEEEECSSTTEEEEEEEEEETHHHHHHHHHHHHHHHHHHHTTTCEEECCSCSSSS
T ss_pred chhhHHHHHHHHHHHHHHHHcCCCeeeeecCcCCCceEEecCCCCHHHHHHHHHHHHHHHHHHHHHhCcEEEEcccccCC
Confidence 65554558999999999999999999999999999999999999999999999999999999999999999999999984
Q ss_pred CCCCceeeeeecccccCCCCchhHHHHHHHHHHHHHHHhhccccccccccCCCCCCCCCCCceeeccCCCcceEeeccCC
Q 018391 242 DWNGAGAHANYSTKSMRNDGGIDVIKKAIEKLGKRHGEHIAAYGEGNERRLTGRHETADINTFSWGVANRGASIRVGRDT 321 (356)
Q Consensus 242 ~~~GsG~H~H~Sl~~~~~~~g~~~~~~fiaGl~L~h~~al~a~~~nsYkRl~p~~~ap~~~~~~WG~~NR~a~vRvp~~~ 321 (356)
|++|||||+|+|||+..+++|++.+++|++||+++|+++|+||+.||||||+|++|||...+++||.+||+++||||...
T Consensus 243 d~~GSG~H~H~Sl~~~~~~~g~~~~~~~i~gl~~~h~~~i~a~~~nSYkRL~~~~eap~~~~~sWG~~NRsa~iRIp~~~ 322 (370)
T 3fky_A 243 DWNGAGCHANVSTKEMRQPGGTKYIEQAIEKLSKRHAEHIKLYGSDNDMRLTGRHETASMTAFSSGVANRGSSIRIPRSV 322 (370)
T ss_dssp SSCCCBEEEEEECHHHHSSSTHHHHHHHHHHHHHTHHHHHHSSCTTGGGC--------CCSCCCEEESCTTSSEEECHHH
T ss_pred CCCcccceeeeccccccCCCCHHHHHHHHHHHHHHhHHHHHHHccchhhhcCCCccCCCcccceEecCCCceeEEecCCC
Confidence 48999999999999754456777789999999449999999999999999999999995446899999999999999754
Q ss_pred CCCCccEEEecCCCCCCCHHHHHHHHHHHhhcCCC
Q 018391 322 EKEGKGYFEDRRPASNMDPYVVTSMIAETTILWKP 356 (356)
Q Consensus 322 ~~~~~~riE~R~~da~aNPYLalAailaAgl~g~~ 356 (356)
+..+.+|||+|+||++|||||++||+|+|||+|++
T Consensus 323 ~~~~~~riE~R~pda~aNPYLa~Aailaagl~Gi~ 357 (370)
T 3fky_A 323 AKEGYGYFEDRRPASNIDPYLVTGIMCETVCGAID 357 (370)
T ss_dssp HHHTCCCEEECCCBTTCCHHHHHHHHHHHHHCCBT
T ss_pred CCCCCCEEEECCCCCCCCHHHHHHHHHHHHhcCcc
Confidence 32224699999999999999999999999999974
No 2
>2d3a_A Glutamine synthetase; ligase; HET: P3S ADP; 2.63A {Zea mays} PDB: 2d3b_A* 2d3c_A*
Probab=100.00 E-value=1.1e-95 Score=714.08 Aligned_cols=356 Identities=85% Similarity=1.474 Sum_probs=312.7
Q ss_pred ChhhHHhhcCCCCCCCcEEEEEEEEEeCCCCcceeeEEeCCCCCCCCCCCCcccccCCCCCCCCCCCccEEEEeeeceec
Q 018391 1 MSLLNDLLNLNLSESTEKVIAEYVWIGGSGMDLRSKARTLPAPTTDPTKLPKWNYDGSSTNQAPGDDSEVILYPQTVFKD 80 (356)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~v~~~~~dg~G~~~rgK~~~~~~~~~~~~~~~~~~~dgs~~g~~~~~~~D~~l~PDt~~~~ 80 (356)
||.+..+.+++++++.++++|+++|+|+.|+++|||.++++.+.+.++++++++||||++++..++++|++|+|||++++
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~v~~~~vD~~g~~~r~k~~~~~~~~~~~~~~~g~~fdgss~~~~~~~~sD~~l~PDt~~~~ 80 (356)
T 2d3a_A 1 MACLTDLVNLNLSDTTEKIIAEYIWIGGSGMDLRSKARTLPGPVTDPSKLPKWNYDGSSTGQAPGEDSEVILYPQAIFKD 80 (356)
T ss_dssp --CHHHHHTCCGGGTCSCEEEEEEEECTTSSCEEEEEEEESSCCCCGGGSCCEEEEGGGTTSSCSSSCEEEEEEEEEEEC
T ss_pred CCccchhhccCCCCCCCeEEEEEEEEcCCCCcccceEEECCcchhhHhhcCcceecccccccccCcCCcEEEEEEEEEEC
Confidence 34444444467777889999999999999999999999999999888888889999999988777799999999999999
Q ss_pred CCCCCCeEEEEEEeecCCCccCCCChHHHHHHHHcCcccCCCcceEeeeeeEEEeccCCCCCCCCCCCCCCCCCCCCccc
Q 018391 81 PFRRGNNILVMCDAYTPAGEPIPTNKRFNAAKVFGHPDVVAEEPWYGIEQEYTLLQKDINWPLGWPVGGYPGPQGPYYCG 160 (356)
Q Consensus 81 Pw~~~~~a~V~cd~~~~~G~P~~~~PR~~Lkr~~~~l~~~G~~~~~g~E~EF~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (356)
||+++++++|+||++++||+|++.|||++|||+++++++.|+++++|+|+|||||+++.+.+.+++..+.|.++++||+.
T Consensus 81 P~~~~~~a~v~cd~~~~dG~P~~~~pR~iLkr~~~~~~~~g~~~~~G~E~EF~lf~~~~~~~~~~~~~g~p~~~g~y~~~ 160 (356)
T 2d3a_A 81 PFRRGNNILVMCDCYTPAGEPIPTNKRYSAAKIFSSPEVAAEEPWYGIEQEYTLLQKDTNWPLGWPIGGFPGPQGPYYCG 160 (356)
T ss_dssp TTTCTTCEEEEEEEECTTSCBCTTCCHHHHHHHHHSHHHHHHCCEEEEEEEEEEEETTTCCBTTSCTTSBCSCSSSCTTC
T ss_pred CcCCCCceEEEEEEECCCCCCCCCCHHHHHHHHHHHHHhcCCeeEEecceEEEEEecCCCcccccccCCCCCCCCCcCcC
Confidence 99986699999999999999999999999999999999999999999999999999764333344433456677889887
Q ss_pred cccchhhHHHHHHHHHHHHHHcCceeeeecCCCCCCcEEEEeCCCchhhhhHHHHHHHHHHHHHHHHcCceEEecccccC
Q 018391 161 VGADKALGRDIVNSHYKACLYAGINISGINGEVMPGQWEFQVGPCVGISSGDQLWMARYILERITEIAGVVLSFDPKPIK 240 (356)
Q Consensus 161 ~~~~~~~~~~~~~~l~~~l~~~Gi~ve~~~~E~gpGQ~Ei~l~~~~~l~aaD~~~~~k~~ik~vA~~~Gl~aTFmpKP~~ 240 (356)
.+.+..+.++++++++++|+++||+||++|||+|||||||++.|.+++++||++++||++||+||++||++|||||||+.
T Consensus 161 ~~~~~~~~~~~~~~i~~~l~~~Gi~ve~~h~E~~pgQ~Ei~~~~~~~l~aAD~~~~~k~~vk~vA~~~G~~aTFmpKP~~ 240 (356)
T 2d3a_A 161 IGAEKSFGRDIVDAHYKACLYAGINISGINGEVMPGQWEFQVGPSVGISSGDQVWVARYILERITEIAGVVVTFDPKPIP 240 (356)
T ss_dssp CSTTTCCCHHHHHHHHHHHHHHTCCEEEEEECSSTTEEEEEEEEEETHHHHHHHHHHHHHHHHHHHHHTEEEECCSCSSC
T ss_pred cccchHHHHHHHHHHHHHHHHCCCCEEEeecCcCCCceEEecCCCCHHHHHHHHHHHHHHHHHHHHHhCCEEEECCCccC
Confidence 76655445899999999999999999999999999999999999999999999999999999999999999999999996
Q ss_pred CCCCCceeeeeecccccCCCCchhHHHHHHHHHHHHHHHhhccccccccccCCCCCCCCCCCceeeccCCCcceEeeccC
Q 018391 241 GDWNGAGAHANYSTKSMRNDGGIDVIKKAIEKLGKRHGEHIAAYGEGNERRLTGRHETADINTFSWGVANRGASIRVGRD 320 (356)
Q Consensus 241 ~~~~GsG~H~H~Sl~~~~~~~g~~~~~~fiaGl~L~h~~al~a~~~nsYkRl~p~~~ap~~~~~~WG~~NR~a~vRvp~~ 320 (356)
+|++|||||+|+|||+..+++|.+.+..++.+++++|+++|+||++||||||+|++|+|++++++||.+||+++||||..
T Consensus 241 ~d~~GSG~H~H~Sl~~~~~~~g~~~f~~~~~~l~l~h~~~l~a~~~nSYkRL~pg~eap~~~~~swG~~NRsa~iRIp~~ 320 (356)
T 2d3a_A 241 GDWNGAGAHTNYSTESMRKEGGYEVIKAAIEKLKLRHKEHIAAYGEGNERRLTGRHETADINTFSWGVANRGASVRVGRE 320 (356)
T ss_dssp SSSCCCBEEEEEECTTTSSTTHHHHHHHHHHHHHHTHHHHHTTSCTTHHHHCSSSSSCCCTTCCCEESSCTTSSEECCHH
T ss_pred CCCCCCcceEEechhhhccCCCHHHHHHHHHHHHHHHHHHHHhHccChHHHccCCccCCCcceeEEeccCCeeeEEEccC
Confidence 35899999999999874333466777777777779999999999999999999999999666999999999999999964
Q ss_pred CCCCCccEEEecCCCCCCCHHHHHHHHHHHhhcCCC
Q 018391 321 TEKEGKGYFEDRRPASNMDPYVVTSMIAETTILWKP 356 (356)
Q Consensus 321 ~~~~~~~riE~R~~da~aNPYLalAailaAgl~g~~ 356 (356)
..+.+++|||+|+||++|||||++||+|+||+++.|
T Consensus 321 ~~~~~~~riE~R~pd~~aNPYLa~Aailaagl~~~~ 356 (356)
T 2d3a_A 321 TEQNGKGYFEDRRPASNMDPYVVTSMIAETTIVWKP 356 (356)
T ss_dssp HHHTTCCCEEECCCBTTCCHHHHHHHHHHHHTTCC-
T ss_pred CCCCCCCEEEEcCCCCCCCHHHHHHHHHHHhcCCCC
Confidence 322235799999999999999999999999999987
No 3
>2ojw_A Glutamine synthetase; amino-acid biosynthesis, ligase, structural GENO structural genomics consortium, SGC; HET: ADP; 2.05A {Homo sapiens} PDB: 2qc8_A* 2uu7_A
Probab=100.00 E-value=3.9e-93 Score=702.13 Aligned_cols=349 Identities=54% Similarity=1.019 Sum_probs=305.4
Q ss_pred hhhHHhhcCCCCCCCcEEEEEEEEEeCCCCcceeeEEeCCCCCCCCCCCCcccccCCCCCCCCCCCccEEEEeeeceecC
Q 018391 2 SLLNDLLNLNLSESTEKVIAEYVWIGGSGMDLRSKARTLPAPTTDPTKLPKWNYDGSSTNQAPGDDSEVILYPQTVFKDP 81 (356)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~v~~~~~dg~G~~~rgK~~~~~~~~~~~~~~~~~~~dgs~~g~~~~~~~D~~l~PDt~~~~P 81 (356)
.+|.+||+| ++.++++|+++|+|+.|+++|||.++++.+.+.++++++++|||+++++...+++|++|+|||++++|
T Consensus 31 ~~l~~~l~~---~~~~~~~v~~~~~D~~G~~~R~K~ip~~~~~~~~~~~p~~~~dgss~~~~~~~~sD~~l~PDt~~~~P 107 (384)
T 2ojw_A 31 GIKQVYMSL---PQGEKVQAMYIWIDGTGEGLRCKTRTLDSEPKCVEELPEWNFDGSSTLQSEGSNSDMYLVPAAMFRDP 107 (384)
T ss_dssp HHHHHHHTS---CCCSCEEEEEEEECTTSSCEEEEEEEESSCCSSGGGSCCEEEEGGGTTSSBTTBCEEEEEEEEEEECT
T ss_pred HHHHHHHhC---CCCCcEEEEEEEECCCCCeeeEEEEEHHHhhhhHhhCccccccCcccccccCCCCcEEEEeeEEEECC
Confidence 468899999 67789999999999999899999999998888888888899999999877778999999999999999
Q ss_pred CCCCCeEEEEEEeecCCCccCCCChHHHHHHHHcCcccCCCcceEeeeeeEEEeccCCCCCCCCCCCCCCCCCCCCcccc
Q 018391 82 FRRGNNILVMCDAYTPAGEPIPTNKRFNAAKVFGHPDVVAEEPWYGIEQEYTLLQKDINWPLGWPVGGYPGPQGPYYCGV 161 (356)
Q Consensus 82 w~~~~~a~V~cd~~~~~G~P~~~~PR~~Lkr~~~~l~~~G~~~~~g~E~EF~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (356)
|+++++++|+||++++||+|++.|||++|||++++++ |+++++|+|+|||||+++.. +.+++..+.|.++++||+..
T Consensus 108 w~~~~~a~v~cd~~~~dG~P~~~~pR~iLkr~~~~~~--g~~~~~G~E~EF~Lf~~~~~-~~~~~~~g~p~~~g~y~~~~ 184 (384)
T 2ojw_A 108 FRKDPNKLVLCEVFKYNRRPAETNLRHTCKRIMDMVS--NQHPWFGMEQEYTLMGTDGH-PFGWPSNGFPGPQGPYYCGV 184 (384)
T ss_dssp TTCTTCEEEEEEEECTTSCBCTTCCHHHHHHHHHHTG--GGCCEEEEEEEEEEEC-CCS-BTTCCTTSCCSCSSSCTTCC
T ss_pred CCCCCeEEEEEEEECCCCCCCCcCHHHHHHHHHHHHh--CCEEEEEeeeEEEEEccCCC-cccccCCCccCCCCCCCccc
Confidence 9986699999999999999999999999999999998 89999999999999987642 22444334567788888876
Q ss_pred ccchhhHHHHHHHHHHHHHHcCceeeeecCCCCCCcEEEEeCCCchhhhhHHHHHHHHHHHHHHHHcCceEEecccccCC
Q 018391 162 GADKALGRDIVNSHYKACLYAGINISGINGEVMPGQWEFQVGPCVGISSGDQLWMARYILERITEIAGVVLSFDPKPIKG 241 (356)
Q Consensus 162 ~~~~~~~~~~~~~l~~~l~~~Gi~ve~~~~E~gpGQ~Ei~l~~~~~l~aaD~~~~~k~~ik~vA~~~Gl~aTFmpKP~~~ 241 (356)
+.++.+.++++++++++|+++||+||++|+|+|||||||++.|.++|++||++++||++||+||++||++|||||||+.+
T Consensus 185 ~~~~~~~~~~~~~i~~~l~~~Gi~ve~~h~E~~pgQ~Ei~~~~~~~l~aAD~~~~~k~~vk~vA~~~Gl~aTFmpKP~~~ 264 (384)
T 2ojw_A 185 GADRAYGRDIVEAHYRACLYAGVKIAGTNAEVMPAQWEFQIGPCEGISMGDHLWVARFILHRVCEDFGVIATFDPKPIPG 264 (384)
T ss_dssp STTTCCCHHHHHHHHHHHHHHTCCEEEEEECSSTTEEEEEEEEEETTHHHHHHHHHHHHHHHHHHHHTCEEECCSCSSCS
T ss_pred ccchHHHHHHHHHHHHHHHHCCCCeEeeecCCCCcceEEEcCCCcHHHHHHHHHHHHHHHHHHHHHhCCEEEEeccccCC
Confidence 65544557999999999999999999999999999999999999999999999999999999999999999999999974
Q ss_pred CCCCceeeeeecccccCCCCchhHHHHHHHHHHHHHHHhhccc----cccccccCCCCCCCCCCCceeeccCCCcceEee
Q 018391 242 DWNGAGAHANYSTKSMRNDGGIDVIKKAIEKLGKRHGEHIAAY----GEGNERRLTGRHETADINTFSWGVANRGASIRV 317 (356)
Q Consensus 242 ~~~GsG~H~H~Sl~~~~~~~g~~~~~~fiaGl~L~h~~al~a~----~~nsYkRl~p~~~ap~~~~~~WG~~NR~a~vRv 317 (356)
|++|||||+|+||++..+++|.+.++++++|++++|++++++| +.||||||+|++|||++++++||.+||+++|||
T Consensus 265 d~~GSG~H~H~Sl~~~~~~~g~n~f~~~~~gl~~~h~~~i~a~~p~~~~nsykRL~pg~ea~~~~~~sWG~~NRsa~iRI 344 (384)
T 2ojw_A 265 NWNGAGCHTNFSTKAMREENGLKYIEEAIEKLSKRHQYHIRAYDPKGGLDNARRLTGFHETSNINDFSAGVANRSASIRI 344 (384)
T ss_dssp SSCCCBEEEEEECHHHHSTTTHHHHHHHHHHHHTCHHHHHHHSSTTTTTTGGGTCC-----CCTTCCCEEETCTTSSEEE
T ss_pred CCCCCeeeEEeehhhhcCCCchhHHHHHHHHHHHHHHHHheEeccCCCCCchhhccCCcccCCCceEEeecccCCceEEe
Confidence 5799999999999864323477888999999988999999999 249999999999999777999999999999999
Q ss_pred ccCCCCCCccEEEecCCCCCCCHHHHHHHHHHHhhcCCC
Q 018391 318 GRDTEKEGKGYFEDRRPASNMDPYVVTSMIAETTILWKP 356 (356)
Q Consensus 318 p~~~~~~~~~riE~R~~da~aNPYLalAailaAgl~g~~ 356 (356)
|...++.+.+|||+|+||++|||||++||+|+|||+++|
T Consensus 345 p~~~~~~~~~riE~R~pd~~aNPYLa~Aailaagl~~~~ 383 (384)
T 2ojw_A 345 PRTVGQEKKGYFEDRRPSANCDPFSVTEALIRTCLLNET 383 (384)
T ss_dssp CHHHHHHTCSCEEECCCBTTCCHHHHHHHHHHHHTSCCC
T ss_pred ecCCCCCCCCEEEEcCCCCCCCHHHHHHHHHHHhcCCCC
Confidence 964322234799999999999999999999999999875
No 4
>3qaj_A Glutamine synthetase; AMP-PCP, ACP, ligase; HET: GLU ADP RGP CIT AMP; 3.05A {Bacillus subtilis}
Probab=100.00 E-value=4.2e-90 Score=691.51 Aligned_cols=325 Identities=22% Similarity=0.297 Sum_probs=285.4
Q ss_pred CcEEEEEEEEEeCCCCcceeeEEeCCCCCCCCCCCCcccccCCCC-CCCCCCCccEEEEee--eceecCCCCC--CeEEE
Q 018391 16 TEKVIAEYVWIGGSGMDLRSKARTLPAPTTDPTKLPKWNYDGSST-NQAPGDDSEVILYPQ--TVFKDPFRRG--NNILV 90 (356)
Q Consensus 16 ~~~~~v~~~~~dg~G~~~rgK~~~~~~~~~~~~~~~~~~~dgs~~-g~~~~~~~D~~l~PD--t~~~~Pw~~~--~~a~V 90 (356)
.++.+|++.++|..| .+|||.++.+.+.+.+++ +++||||++ |+..++++|++|+|| |++++||.++ ++|+|
T Consensus 16 ~~i~~v~l~~~D~~G-~~r~k~ip~~~~~~~~~~--G~~fdgssi~g~~~~~~~D~~l~PD~~T~~~~Pw~~~~~~~a~v 92 (444)
T 3qaj_A 16 ENVKYIRLQFTDILG-TIKNVEIPVSQLGKALDN--KVMFDGSSIEGFVRIEESDMYLYPDLNTFVIFPWTAEKGKVARF 92 (444)
T ss_dssp HTCCEEEEEEECSSS-CEEEEEEEGGGHHHHHTT--CCEEETTTSTTSSCTTCCEEECCBCGGGCEEEHHHHHHHCEEEE
T ss_pred CCCCEEEEEEECCCC-CEEEEEEeHHHHHHHHhC--CccccCccccCccCCCCCCEEEEEecCceEECccccCCCCeEEE
Confidence 367788888889888 899999888765433333 578999988 887778999999999 8999999875 69999
Q ss_pred EEEeecCCCccCCCChHHHHHHHHcCcccCCCc-ceEeeeeeEEEeccCCCCCCCCCCCCCCCCCCCCccccccchhhHH
Q 018391 91 MCDAYTPAGEPIPTNKRFNAAKVFGHPDVVAEE-PWYGIEQEYTLLQKDINWPLGWPVGGYPGPQGPYYCGVGADKALGR 169 (356)
Q Consensus 91 ~cd~~~~~G~P~~~~PR~~Lkr~~~~l~~~G~~-~~~g~E~EF~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (356)
+||++++||+|++.|||++|||++++++++|++ +++|+|+|||||+.+++ +.+. ..+.+.++||+..+.+. ..
T Consensus 93 ~cd~~~~dG~p~~~~pR~iLkr~~~~~~~~G~~~~~~g~E~EF~l~~~~~~---g~~~-~~~~~~~~y~~~~~~d~--~~ 166 (444)
T 3qaj_A 93 ICDIYNPDGTPFEGDPRNNLKRILKEMEDLGFSDFNLGPEPEFFLFKLDEK---GEPT-LELNDKGGYFDLAPTDL--GE 166 (444)
T ss_dssp EBCCBCTTSCBCSSCHHHHHHHHHHHHHTTTCCEEEEEEEECEEEEEECSS---SCEE-EEESCCCCTTCCTTTSC--CT
T ss_pred EEEEECCCCCCCCCChHHHHHHHHHHHHHcCCCeeeEEeceEEEEEecCCC---CCCC-CcCcCCCCccccCCCcc--hH
Confidence 999999999999999999999999999999999 99999999999997653 2211 13456678887666544 25
Q ss_pred HHHHHHHHHHHHcCceeeeecCCCCCCcEEEEeCCCchhhhhHHHHHHHHHHHHHHHHcCceEEecccccCCCCCCceee
Q 018391 170 DIVNSHYKACLYAGINISGINGEVMPGQWEFQVGPCVGISSGDQLWMARYILERITEIAGVVLSFDPKPIKGDWNGAGAH 249 (356)
Q Consensus 170 ~~~~~l~~~l~~~Gi~ve~~~~E~gpGQ~Ei~l~~~~~l~aaD~~~~~k~~ik~vA~~~Gl~aTFmpKP~~~~~~GsG~H 249 (356)
+++.+|+++|+++||+||++|||+|||||||++.|.++|++||++++||++||+||++||++|||||||+. +.+|||||
T Consensus 167 ~~~~~i~~~l~~~Gi~ve~~h~E~~pGQ~Ei~~~~~~~l~aAD~~~~~k~~vk~vA~~~G~~aTFmpKP~~-~~~GsG~H 245 (444)
T 3qaj_A 167 NCRRDIVLELEEMGFEIEASHHEVAPGQHEIDFKYAGAVRSCDDIQTFKLVVKTIARKHGLHATFMPKPLF-GVNGSGMH 245 (444)
T ss_dssp THHHHHHHHHHTTTCCEEEEEECSSTTEEEEEECCEEHHHHHHHHHHHHHHHHHHHHHTTEEEECCSCSST-TSCCCCEE
T ss_pred HHHHHHHHHHHHCCCCeEEeEcCcCCCcEEEecCCChHHHHHHHHHHHHHHHHHHHHHcCCEEEEcCCcCC-CCCCCcce
Confidence 77888889999999999999999999999999999999999999999999999999999999999999999 47999999
Q ss_pred eeecccccC-C-------CCchh-HHHHHHHHHHHHHHHhhccccc---cccccCCCCCCCCCCCceeeccCCCcceEee
Q 018391 250 ANYSTKSMR-N-------DGGID-VIKKAIEKLGKRHGEHIAAYGE---GNERRLTGRHETADINTFSWGVANRGASIRV 317 (356)
Q Consensus 250 ~H~Sl~~~~-~-------~~g~~-~~~~fiaGl~L~h~~al~a~~~---nsYkRl~p~~~ap~~~~~~WG~~NR~a~vRv 317 (356)
+|+|||+.. | ..+++ ++++||||| |+|+++++||++ ||||||+|++||| ++++||.+||+++|||
T Consensus 246 ~H~Sl~~~g~n~f~~~~~~~~lS~~~~~fiaGl-L~h~~~l~a~~~PtvNSYkRl~pg~~AP--~~~~Wg~~NRsa~iRi 322 (444)
T 3qaj_A 246 CNLSLFKNGVNAFFDENADLQLSETAKHFIAGI-VKHATSFTAVTNPTVNSYKRLVPGYEAP--CYVAWSAQNRSPLIRI 322 (444)
T ss_dssp EEEEEEETTEETTCCTTSSSSCCHHHHHHHHHH-HHTHHHHHHHHSCSSTHHHHSCTTSSSS--CBCCEESSCSSSSEEC
T ss_pred eeeccccCCCcccCCCCcccchHHHHHHHHHHH-HHHHHHHHHHHCCCCcccccCCCCCcCC--CcceeecCCCcceEee
Confidence 999999732 1 12454 789999999 999999999985 9999999999999 8999999999999999
Q ss_pred ccCCCCCCccEEEecCCCCCCCHHHHHHHHHHHhhcCC
Q 018391 318 GRDTEKEGKGYFEDRRPASNMDPYVVTSMIAETTILWK 355 (356)
Q Consensus 318 p~~~~~~~~~riE~R~~da~aNPYLalAailaAgl~g~ 355 (356)
|...+ +++|||+|+||++|||||++||+|+|||+|+
T Consensus 323 p~~~~--~~~RiE~R~pd~~aNPYLa~Aa~LaAGldGI 358 (444)
T 3qaj_A 323 PASRG--ISTRVEVRSVDPAANPYLALSVLLAAGLDGI 358 (444)
T ss_dssp CSCCG--GGCCEEECCCCTTSCHHHHHHHHHHHHHHHH
T ss_pred ccCCC--CCceEEecCCCCCCCHHHHHHHHHHHHHHHH
Confidence 96432 3579999999999999999999999999985
No 5
>3ng0_A Glutamine synthetase; GSI, nitrogen metabolism, synec ligase; HET: ANP; 2.80A {Synechocystis SP}
Probab=100.00 E-value=1.8e-88 Score=685.37 Aligned_cols=331 Identities=23% Similarity=0.293 Sum_probs=285.4
Q ss_pred CcEEEEEEEEEeCCCCcceeeEEeCCCCCC-CCCCCCcccccCCCC-CCCCCCCccEEEEee--eceecCCCCCCeEEEE
Q 018391 16 TEKVIAEYVWIGGSGMDLRSKARTLPAPTT-DPTKLPKWNYDGSST-NQAPGDDSEVILYPQ--TVFKDPFRRGNNILVM 91 (356)
Q Consensus 16 ~~~~~v~~~~~dg~G~~~rgK~~~~~~~~~-~~~~~~~~~~dgs~~-g~~~~~~~D~~l~PD--t~~~~Pw~~~~~a~V~ 91 (356)
.++.+|++.++|..| .+|||.++.+.+.+ .+++ +++||||++ |+..++++|++|+|| |++++||.++++++|+
T Consensus 15 ~~i~~V~l~f~D~~G-~~r~k~ip~~~~~~~~~~~--G~~fdgss~~g~~~~~~sD~~l~PD~~T~~~~Pw~~~~~a~v~ 91 (473)
T 3ng0_A 15 ENIKIIDLKFIDTPG-IWQHCSFYYDQLDENSFTE--GIPFDGSSIRGWKAINESDMCMVPDPNTATIDPFCKEPTLSMI 91 (473)
T ss_dssp TTCCEEEEEEECSSS-CEEEEEEEGGGCCGGGGTT--CEEEETTSSTTSCCGGGCEEEEEECGGGCEECTTCSSCEEEEE
T ss_pred CCCCEEEEEEECCCC-CEEEEEEeHHHHHHHHHhC--CCccccccccccccCCCCcEEEEeecCccEECCcCCCCcEEEE
Confidence 367888888888888 89999988876654 3333 578999988 787778999999999 8999999987799999
Q ss_pred EEeecC-CCccCCCChHHHHHHHHcCcccCCC--cceEeeeeeEEEeccCC-----C--------CCCCCC---------
Q 018391 92 CDAYTP-AGEPIPTNKRFNAAKVFGHPDVVAE--EPWYGIEQEYTLLQKDI-----N--------WPLGWP--------- 146 (356)
Q Consensus 92 cd~~~~-~G~P~~~~PR~~Lkr~~~~l~~~G~--~~~~g~E~EF~l~~~~~-----~--------~~~~~~--------- 146 (356)
||++++ +|+|++.|||++|||++++++++|+ ++.+|+|+|||||+++. . ...+|.
T Consensus 92 cd~~~~~~g~p~~~~pR~iLkr~~~~~~~~G~~~~~~~g~E~EF~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (473)
T 3ng0_A 92 CSIKEPRTGEWYNRDPRTIAAKAAEYLRGTGIADTVYFGPEAEFFLFDDIRFGQTENSSYYFADSVEGRWNTGREEEGGN 171 (473)
T ss_dssp EEEECTTTSSBCTTCHHHHHHHHHHHHHHHTSCSEEEEEEEECEEEESEEEEEECSSCEEEEEECTTCGGGTTCCCTTCC
T ss_pred EEEeECCCCCCCCCChHHHHHHHHHHHHHcCCCcceEEEeeeEEEEEeecccccccccccccccccccccccccccccCC
Confidence 999998 9999999999999999999988776 89999999999998521 0 000110
Q ss_pred CCCCCCCCCCCccccccchhhHHHHHHHHHHHHHHcCceeeeecCCCC-CCcEEEEeCCCchhhhhHHHHHHHHHHHHHH
Q 018391 147 VGGYPGPQGPYYCGVGADKALGRDIVNSHYKACLYAGINISGINGEVM-PGQWEFQVGPCVGISSGDQLWMARYILERIT 225 (356)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~Gi~ve~~~~E~g-pGQ~Ei~l~~~~~l~aaD~~~~~k~~ik~vA 225 (356)
.+..+.++++||+..+.+. .++++++|+++|+++||+||++|||+| ||||||++.|.++|++||++++||++||+||
T Consensus 172 ~g~~~~~~~~y~~~~~~d~--~~~~~~~i~~~l~~~Gi~ve~~h~E~~~pGQ~Ei~~~~~~~l~aAD~~~~~k~~vk~vA 249 (473)
T 3ng0_A 172 LGYKPGYKQGYFPVAPTDT--AQDIRTEMLLTMAAFGVPIEKHHHEVASGGQNELGIKFDKLVNSADNLMIYKYVIKNVA 249 (473)
T ss_dssp CCCCCCTTCCSSCCTTTCC--CHHHHHHHHHHHHHTTCCEEEEEECSSTTTEEEEEECCEEHHHHHHHHHHHHHHHHHHH
T ss_pred CCcccCCCccccccCccch--hHHHHHHHHHHHHHCCCCeEEeecCcCCCCceEEEccCCCHHHHHHHHHHHHHHHHHHH
Confidence 1123455677877666554 378999999999999999999999999 9999999999999999999999999999999
Q ss_pred HHcCceEEecccccCCCCCCceeeeeecccccC-C----C--Cchh-HHHHHHHHHHHHHHHhhccccc---cccccCCC
Q 018391 226 EIAGVVLSFDPKPIKGDWNGAGAHANYSTKSMR-N----D--GGID-VIKKAIEKLGKRHGEHIAAYGE---GNERRLTG 294 (356)
Q Consensus 226 ~~~Gl~aTFmpKP~~~~~~GsG~H~H~Sl~~~~-~----~--~g~~-~~~~fiaGl~L~h~~al~a~~~---nsYkRl~p 294 (356)
++||++|||||||+. +.+|||||+|+|||+.. | + .+++ ++++||||| |+|+++++||++ ||||||+|
T Consensus 250 ~~~G~~aTFmpKP~~-~~~GSG~H~H~Sl~~~g~n~F~~~~~~~lS~~~~~fiaGl-L~h~~~l~a~~~Pt~NSYkRL~p 327 (473)
T 3ng0_A 250 KKYGKTVTFMPKPIF-NDNGSGMHVHQSLWKDGQPLFAGDKYAGFSQMGLWYIGGI-LKHAPALLAFTNPTTNSYKRLVP 327 (473)
T ss_dssp HHTTCEEECCSCSST-TSCCCCEEEEEEEEETTEETTBSSSGGGBCHHHHHHHHHH-HHHHHHHHHHHSCSTTHHHHBBT
T ss_pred HHhCCEEEEcCcccC-CCCCCeeEEEEeeccCCccccCCCCccchhHHHHHHHHHH-HHHHHHHHHHhCCCcchhhcccC
Confidence 999999999999999 47999999999999632 1 1 3454 789999999 999999999985 99999999
Q ss_pred CCCCCCCCceeeccCCCcceEeeccCCCCCCccEEEecCCCCCCCHHHHHHHHHHHhhcCC
Q 018391 295 RHETADINTFSWGVANRGASIRVGRDTEKEGKGYFEDRRPASNMDPYVVTSMIAETTILWK 355 (356)
Q Consensus 295 ~~~ap~~~~~~WG~~NR~a~vRvp~~~~~~~~~riE~R~~da~aNPYLalAailaAgl~g~ 355 (356)
++||| ++++||.+||+++||||......+++|||+|+||++|||||++||+|+|||+|+
T Consensus 328 g~~AP--~~~~Wg~~NRsa~iRip~~~~~~~~~RiE~R~pd~~aNPYLa~Aa~LaAGldGI 386 (473)
T 3ng0_A 328 GFEAP--VNLAYSQGNRSASVRIPLSGGNPKAKRLEFRCPDATSNPYLAFAAMLCAGIDGI 386 (473)
T ss_dssp TTBCC--CBCCEEESCTTSSEEECCCSSCGGGCCEEECSCCTTSCHHHHHHHHHHHHHHHH
T ss_pred CCcCc--cceeeeccCCcCceeeeccCCCCCcceEEeecCCCCCCHHHHHHHHHHHHHHHH
Confidence 99999 899999999999999997433334679999999999999999999999999985
No 6
>4hpp_A Probable glutamine synthetase; glutamine synthase homolog, glutamate, polyamine, ligase; HET: GLU; 2.50A {Pseudomonas aeruginosa}
Probab=100.00 E-value=1.3e-87 Score=672.76 Aligned_cols=320 Identities=15% Similarity=0.113 Sum_probs=277.9
Q ss_pred CCcEEEEEEEEEeCCCCcceeeEEeCCCCCCCCCCCCcccccCCC--C-CCCC-------CCCccEEEEee--eceecCC
Q 018391 15 STEKVIAEYVWIGGSGMDLRSKARTLPAPTTDPTKLPKWNYDGSS--T-NQAP-------GDDSEVILYPQ--TVFKDPF 82 (356)
Q Consensus 15 ~~~~~~v~~~~~dg~G~~~rgK~~~~~~~~~~~~~~~~~~~dgs~--~-g~~~-------~~~~D~~l~PD--t~~~~Pw 82 (356)
..++.+|++.|+|..| .+|||+++.+.+.+.+++ +++|+++. + ++.. .+++|++|+|| |++++||
T Consensus 4 ~~~v~~v~l~~~D~~G-~~r~k~vp~~~~~~~~~~--G~~f~~s~~~~~~~~~~~~~~~~~~~~D~~l~PD~~T~~~~Pw 80 (443)
T 4hpp_A 4 LQPVRLVSFVTTDLAG-ITRGRSLPLATLEEQLAS--GCGWVPANSSLTPQDLIDESSPWGSHGDLRLLPDPNSRVRVEQ 80 (443)
T ss_dssp CCCCCEEEEEEECTTS-CEEEEEEEGGGHHHHHTT--CEEECGGGGGCCTTSCCCTTCSCSSSCCEEEEECGGGCEEECC
T ss_pred CCCCCEEEEEEECCCC-CEEEEEEEHHHHHHHHhC--CcccCchhheeeccCccccccCCCCCCCEEEEEcccceEECCc
Confidence 4567788888899999 999999888766554443 45555541 1 1111 25699999999 8999999
Q ss_pred CCC----CeEEEEEEeecCCCccCCCChHHHHHHHHcCcccCCCcceEeeeeeEEEeccCCCCCCCCCCCCCCCCCCCCc
Q 018391 83 RRG----NNILVMCDAYTPAGEPIPTNKRFNAAKVFGHPDVVAEEPWYGIEQEYTLLQKDINWPLGWPVGGYPGPQGPYY 158 (356)
Q Consensus 83 ~~~----~~a~V~cd~~~~~G~P~~~~PR~~Lkr~~~~l~~~G~~~~~g~E~EF~l~~~~~~~~~~~~~~~~~~~~~~~~ 158 (356)
.++ ++|+|+||++++||+|++.|||++|||++++++++|+++++|+|+|||||+. .|.+.++||
T Consensus 81 ~~~~~~~~~a~v~cd~~~~dG~p~~~~pR~~L~r~~~~~~~~G~~~~~g~E~EF~l~~~------------~p~~~~~~y 148 (443)
T 4hpp_A 81 GPDAAAPALDYLHGNLVETDGTPWPACPRSLLRAEVERYRDSGLQVIAAFEHEFSLLGL------------PGERPAAAF 148 (443)
T ss_dssp CSSTTSCCEEEEEEEEECTTSCBCTTCHHHHHHHHHHHHHHTTEEEEEEEEEEEEEECC------------CSSSCCCTT
T ss_pred ccccCCCCeEEEEEEEECCCCCCCCCChHHHHHHHHHHHHHcCCeEEEEeeeEEEEecc------------ccCCCCccC
Confidence 982 5999999999999999999999999999999999999999999999999963 244567788
Q ss_pred cccccchhhHHHHHHHHHHHHHHcCceeeeecCCCCCCcEEEEeCCCchhhhhHHHHHHHHHHHHHHHHcCceEEecccc
Q 018391 159 CGVGADKALGRDIVNSHYKACLYAGINISGINGEVMPGQWEFQVGPCVGISSGDQLWMARYILERITEIAGVVLSFDPKP 238 (356)
Q Consensus 159 ~~~~~~~~~~~~~~~~l~~~l~~~Gi~ve~~~~E~gpGQ~Ei~l~~~~~l~aaD~~~~~k~~ik~vA~~~Gl~aTFmpKP 238 (356)
+..+.+. .++++++++++|+++||+||++|||+|||||||++.|.+++++||++++||++||+||++||++|||||||
T Consensus 149 ~~~~~~~--~~~~~~~i~~~l~~~Gi~ve~~h~E~~pgQ~Ei~~~~~~~l~aAD~~~~~k~~vk~vA~~~G~~aTFmpKP 226 (443)
T 4hpp_A 149 SLQAQRA--AGQFPGWLVSALAQAGTEPEMFLPEYGQRQYEVTCRPAQGVAAADRAVNVREVTREVARQMGLRTCFAPLP 226 (443)
T ss_dssp CHHHHHH--TTTHHHHHHHHHHHTTCCEEEEEECSSTTEEEEEECCEETHHHHHHHHHHHHHHHHHHHHHTCEEECSSSS
T ss_pred CCCcccc--hHHHHHHHHHHHHHCCCCeEEeecCCCCCceEEEecCCcHHHHHHHHHHHHHHHHHHHHHhCCEEEEeccc
Confidence 7655543 47899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCceeeeeecccccC--C----C---Cchh-HHHHHHHHHHHHHHHhhccccc---cccccCCCCCCCCCCCcee
Q 018391 239 IKGDWNGAGAHANYSTKSMR--N----D---GGID-VIKKAIEKLGKRHGEHIAAYGE---GNERRLTGRHETADINTFS 305 (356)
Q Consensus 239 ~~~~~~GsG~H~H~Sl~~~~--~----~---~g~~-~~~~fiaGl~L~h~~al~a~~~---nsYkRl~p~~~ap~~~~~~ 305 (356)
+. +.+|||||+|+|||+.+ | + .+++ ++++||||| |+|+++++||++ ||||||+|++||| ++++
T Consensus 227 ~~-~~~GsG~H~h~Sl~~~~G~n~f~~~~~~~~lS~~~~~fiaGl-l~h~~~l~a~~~P~~NSYkRL~pg~~AP--~~~~ 302 (443)
T 4hpp_A 227 AP-GAVTNGVHLHLSLQHADGSPLLYEPGRPNDLSELGEHWAAGV-LAHLPALCALTAPTAASYLRLKPHHWSA--AYAC 302 (443)
T ss_dssp ST-TCCCCCEEEEEEEEETTSCBSSBCTTSGGGBCHHHHHHHHHH-HHHHHHHHHHHSCSGGGHHHHSCSTTCC--CBCC
T ss_pred CC-CCCcccceeeeeeecCCCCccccCCCCccchhHHHHHHHHHH-HHHHHHHHHHhCCCCcchhccCCCCcCC--Ccce
Confidence 99 58999999999999743 1 1 2454 679999999 999999999986 9999999999999 8999
Q ss_pred eccCCCcceEeeccCC---CC--CCccEEEecCCCCCCCHHHHHHHHHHHhhcCC
Q 018391 306 WGVANRGASIRVGRDT---EK--EGKGYFEDRRPASNMDPYVVTSMIAETTILWK 355 (356)
Q Consensus 306 WG~~NR~a~vRvp~~~---~~--~~~~riE~R~~da~aNPYLalAailaAgl~g~ 355 (356)
||.+||+++||||... +. .+++|||+|+||++|||||++||+|+|||+|+
T Consensus 303 WG~~NRsa~iRip~~~~~~~~~~~~~~riE~R~pd~~aNPYLa~AaiLaAGl~GI 357 (443)
T 4hpp_A 303 LGLRNREAALRICPVVSVGGKPLGKQYNLEFRPMDATTCPHLAMAAVLIAGRLGI 357 (443)
T ss_dssp EESSCTTSSEEEECCCCSSSCCSSTTCEEEEEEECTTSCHHHHHHHHHHHHHHHH
T ss_pred eccCCCceeEEeccccccCCCccccccEEEEcCCCCCcCHHHHHHHHHHHHHHHH
Confidence 9999999999999764 21 24579999999999999999999999999985
No 7
>4acf_A Glutamine synthetase 1; ligase, nucleotide-binding, TRI-substituted IMID TAUT state, RV2220, GLNA1; HET: 46B P3S; 2.00A {Mycobacterium tuberculosis} PDB: 2wgs_A* 2whi_A* 3zxr_A* 3zxv_A* 2bvc_A* 1hto_A* 1htq_A*
Probab=100.00 E-value=3.5e-85 Score=664.34 Aligned_cols=331 Identities=21% Similarity=0.276 Sum_probs=281.6
Q ss_pred CcEEEEEEEEEeCCCCcceeeEEeCCCCCCC-CCCCCcccccCCCC-CCCCCCCccEEEEee--eceecCCCCCCeEEEE
Q 018391 16 TEKVIAEYVWIGGSGMDLRSKARTLPAPTTD-PTKLPKWNYDGSST-NQAPGDDSEVILYPQ--TVFKDPFRRGNNILVM 91 (356)
Q Consensus 16 ~~~~~v~~~~~dg~G~~~rgK~~~~~~~~~~-~~~~~~~~~dgs~~-g~~~~~~~D~~l~PD--t~~~~Pw~~~~~a~V~ 91 (356)
.++.+|++.++|..| .+|||.++.+.+.+. +++ |++||||++ |+..++++|++|+|| |++++||.++.++.|.
T Consensus 24 ~~I~~V~l~f~D~~G-~~r~k~ip~~~~~~~~~~~--G~~fdgssi~G~~~~~~sD~~l~PD~~T~~~~Pw~~~~~~~v~ 100 (486)
T 4acf_A 24 EKVEYVDVRFCDLPG-IMQHFTIPASAFDKSVFDD--GLAFDGSSIRGFQSIHESDMLLLPDPETARIDPFRAAKTLNIN 100 (486)
T ss_dssp TTCCEEEEEEECSSS-CEEEEEEEGGGCSHHHHHT--CEEEEGGGSTTSCCGGGCEEEEEECGGGCEECSSCSSCEEEEE
T ss_pred CCCcEEEEEEECCCC-cEEEEEEEHHHHHHHHHHC--CCeeecccccccccCCCCCEEEEEccceeEECCcCCCccEEEE
Confidence 477888888888888 899999888765432 222 578999998 887778899999999 7999999998889999
Q ss_pred EEeecC-CCccCCCChHHHHHHHHcCcccC--CCcceEeeeeeEEEeccCC-----C------------C-------CCC
Q 018391 92 CDAYTP-AGEPIPTNKRFNAAKVFGHPDVV--AEEPWYGIEQEYTLLQKDI-----N------------W-------PLG 144 (356)
Q Consensus 92 cd~~~~-~G~P~~~~PR~~Lkr~~~~l~~~--G~~~~~g~E~EF~l~~~~~-----~------------~-------~~~ 144 (356)
|+++++ +|+|++.|||++|||+++++++. |+++++|+|+|||||++.. + + ..+
T Consensus 101 ~~~~d~~~g~P~~~~pR~iLk~~~~~~~~~g~~~~~~~g~E~EF~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~g 180 (486)
T 4acf_A 101 FFVHDPFTLEPYSRDPRNIARKAENYLISTGIADTAYFGAEAEFYIFDSVSFDSRANGSFYEVDAISGWWNTGAATEADG 180 (486)
T ss_dssp EEEECTTTCCBCTTCHHHHHHHHHHHHHHHSSCSEEEEEEEECEEEESEEEEEECSSCEEEEEECTTBGGGTTCSBCTTS
T ss_pred EEEeeCCCCCCCCCCchHHHHHHHHHHHHcCCcceecccceeEEEEeccccccccccCCcccCCccccccCCCCcccCCC
Confidence 999985 89999999999999999999875 5578899999999997521 0 0 001
Q ss_pred CCCCC-CCCCCCCCccccccchhhHHHHHHHHHHHHHHcCceeeeecCCCCC-CcEEEEeCCCchhhhhHHHHHHHHHHH
Q 018391 145 WPVGG-YPGPQGPYYCGVGADKALGRDIVNSHYKACLYAGINISGINGEVMP-GQWEFQVGPCVGISSGDQLWMARYILE 222 (356)
Q Consensus 145 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~Gi~ve~~~~E~gp-GQ~Ei~l~~~~~l~aaD~~~~~k~~ik 222 (356)
.+..+ .+....+||+..+.+. .++++++++++|+++||+|+++|||+|| |||||++.|.++|+|||++++||++||
T Consensus 181 ~p~~~~~~~~~~~y~~~~~~~~--~~~~~~~i~~~l~~~Gi~ve~~h~E~gp~GQ~Ei~~~~~~~l~aAD~~~~~k~~vk 258 (486)
T 4acf_A 181 SPNRGYKVRHKGGYFPVAPNDQ--YVDLRDKMLTNLINSGFILEKGHHEVGSGGQAEINYQFNSLLHAADDMQLYKYIIK 258 (486)
T ss_dssp CBCCCCCBCTTCCSSBCTTTSC--CHHHHHHHHHHHHHTTCCEEEEEECSSTTTEEEEEECCEEHHHHHHHHHHHHHHHH
T ss_pred CCCCCcccccCCccccCCcchh--HHHHHHHHHHHHHhCCceEEeeeeeeeccceeEEeccCcchhhhhhHHHHHHHHHH
Confidence 11111 1233455666555444 3799999999999999999999999998 999999999999999999999999999
Q ss_pred HHHHHcCceEEecccccCCCCCCceeeeeecccccCC-----C---Cchh-HHHHHHHHHHHHHHHhhccccc---cccc
Q 018391 223 RITEIAGVVLSFDPKPIKGDWNGAGAHANYSTKSMRN-----D---GGID-VIKKAIEKLGKRHGEHIAAYGE---GNER 290 (356)
Q Consensus 223 ~vA~~~Gl~aTFmpKP~~~~~~GsG~H~H~Sl~~~~~-----~---~g~~-~~~~fiaGl~L~h~~al~a~~~---nsYk 290 (356)
+||++||++|||||||+. +.+|||||+|+|||+... + .+++ ++++||||| |+|+++++||++ ||||
T Consensus 259 ~vA~~~G~~aTFmpKP~~-~~~GsG~H~H~Sl~~~g~n~f~~~~~~~~lS~~~~~fiaGl-l~h~~~l~a~~~PtvNSYk 336 (486)
T 4acf_A 259 NTAWQNGKTVTFMPKPLF-GDNGSGMHCHQSLWKDGAPLMYDETGYAGLSDTARHYIGGL-LHHAPSLLAFTNPTVNSYK 336 (486)
T ss_dssp HHHHHTTCEEECCSCSST-TSCCCCEEEEEEEEETTEESSBCTTSGGGBCHHHHHHHHHH-HHHHHHHHHHHSCSTTHHH
T ss_pred HHHHHcCCeEEEeecccc-CCCcccceeeeeeccCCCccccccccccccchHHHHHHHHH-HHhhhcceeeecCCCcchh
Confidence 999999999999999999 589999999999997421 1 2454 789999999 999999999985 9999
Q ss_pred cCCCCCCCCCCCceeeccCCCcceEeeccCCCCCCccEEEecCCCCCCCHHHHHHHHHHHhhcCC
Q 018391 291 RLTGRHETADINTFSWGVANRGASIRVGRDTEKEGKGYFEDRRPASNMDPYVVTSMIAETTILWK 355 (356)
Q Consensus 291 Rl~p~~~ap~~~~~~WG~~NR~a~vRvp~~~~~~~~~riE~R~~da~aNPYLalAailaAgl~g~ 355 (356)
||+|++||| ++++||.+||+++||||.....++++|||+|+||++|||||++||+|+|||+|+
T Consensus 337 Rl~pg~~AP--~~~~wg~~NRsa~iRip~~~~~~~~~riE~R~pd~~aNPYLalAailaAGldGI 399 (486)
T 4acf_A 337 RLVPGYEAP--INLVYSQRNRSACVRIPITGSNPKAKRLEFRSPDSSGNPYLAFSAMLMAGLDGI 399 (486)
T ss_dssp HSSTTSSSC--SBSCEEETCTTSSEEECCCTTCTTTCCEEECCCCSSSCHHHHHHHHHHHHHHHH
T ss_pred ccCCCCcCC--ceeEEeccCCCcceEecccCCCCccceeeecCCCCCCCHHHHHHHHHHHHHHHH
Confidence 999999999 899999999999999997654455689999999999999999999999999985
No 8
>1f52_A Glutamine synthetase; ADP, MPD, ligase; HET: ADP; 2.49A {Salmonella typhimurium} SCOP: d.15.9.1 d.128.1.1 PDB: 1f1h_A* 1fpy_A* 1lgr_A* 2lgs_A* 2gls_A
Probab=100.00 E-value=5.5e-85 Score=659.83 Aligned_cols=330 Identities=21% Similarity=0.279 Sum_probs=284.1
Q ss_pred CcEEEEEEEEEeCCCCcceeeEEeCCCCCC-CCCCCCcccccCCCC-CCCCCCCccEEEEee--eceecCCCCCCeEEEE
Q 018391 16 TEKVIAEYVWIGGSGMDLRSKARTLPAPTT-DPTKLPKWNYDGSST-NQAPGDDSEVILYPQ--TVFKDPFRRGNNILVM 91 (356)
Q Consensus 16 ~~~~~v~~~~~dg~G~~~rgK~~~~~~~~~-~~~~~~~~~~dgs~~-g~~~~~~~D~~l~PD--t~~~~Pw~~~~~a~V~ 91 (356)
.++.+|++.++|..| .+|||.++.+.+.+ .++ .+++||||++ |+...+++|++|+|| |++++||.++++++|+
T Consensus 12 ~~i~~v~~~~~D~~G-~~r~k~vp~~~~~~~~~~--~g~~fdgss~~g~~~~~~sD~~l~PD~~T~~~~Pw~~~~~~~v~ 88 (468)
T 1f52_A 12 HEVKFVDLRFTDTKG-KEQHVTIPAHQVNAEFFE--EGKMFDGSSIGGWKGINESDMVLMPDASTAVIDPFFADSTLIIR 88 (468)
T ss_dssp TTCCEEEEEEECTTS-CEEEEEEEGGGCCHHHHH--HCEEEEGGGSTTSCCSSCCEEEEEECGGGCEECSSCSSCEEEEE
T ss_pred CCCCEEEEEEECCCC-CEEEEEEEHHHHHHHHhh--CceeeccccccccccCCCCCEEEEEecCCcEEccccCCCceEEE
Confidence 377888888899999 89999977764433 121 3588999887 887778999999999 8999999876699999
Q ss_pred EEeecC-CCccCCCChHHHHHHHHcCcccCCC--cceEeeeeeEEEeccCC-----CC--------CCCCC---------
Q 018391 92 CDAYTP-AGEPIPTNKRFNAAKVFGHPDVVAE--EPWYGIEQEYTLLQKDI-----NW--------PLGWP--------- 146 (356)
Q Consensus 92 cd~~~~-~G~P~~~~PR~~Lkr~~~~l~~~G~--~~~~g~E~EF~l~~~~~-----~~--------~~~~~--------- 146 (356)
||++++ +|+|++.|||++|||++++++++|+ ++.+|+|+|||||+++. +. ..++.
T Consensus 89 ~d~~~~~~G~p~~~~pR~ilk~~~~~l~~~G~~~~~~~G~E~EFfl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (468)
T 1f52_A 89 CDILEPGTLQGYDRDPRSIAKRAEDYLRATGIADTVLFGPEPEFFLFDDIRFGASISGSHVAIDDIEGAWNSSTKYEGGN 168 (468)
T ss_dssp EEEECTTTCCCCTTCHHHHHHHHHHHHHHHTSCSEEEEEEEEEEEEESEEEEEEETTEEEEEEECTTCGGGGGCCCTTCC
T ss_pred EEEEeCCCCCcCCCCHHHHHHHHHHHHHHcCCCcceEEEeeeEEEEEeccccccCCccccccccccccccCCCccccccC
Confidence 999999 7999999999999999999999999 89999999999998531 00 00111
Q ss_pred CCCCCCCCCCCccccccchhhHHHHHHHHHHHHHHcCceeeeecCCCCCC-cEEEEeCCCchhhhhHHHHHHHHHHHHHH
Q 018391 147 VGGYPGPQGPYYCGVGADKALGRDIVNSHYKACLYAGINISGINGEVMPG-QWEFQVGPCVGISSGDQLWMARYILERIT 225 (356)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~Gi~ve~~~~E~gpG-Q~Ei~l~~~~~l~aaD~~~~~k~~ik~vA 225 (356)
.+..+.+.++||+..+.+. .++++++|++.|+++||+||+.|||+||| ||||++.|.++++|||++++||++||+||
T Consensus 169 ~g~~~~~~~~Y~~~~~~~~--~~~~~~~i~~~l~~~Gi~ve~~h~E~apggQ~Ei~~~~~~~l~aAD~~~~~k~~vk~vA 246 (468)
T 1f52_A 169 KGHRPGVKGGYFPVPPVDS--AQDIRSEMCLVMEQMGLVVEAHHHEVATAGQNEVATRFNTMTKKADEIQIYKYVVHNVA 246 (468)
T ss_dssp CCCCCCTTCCSSBCTTSSC--CHHHHHHHHHHHHHTTCCEEEEEECSSTTTEEEEEECCEEHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCccCCCcccc--HHHHHHHHHHHHHHCCCCeEEeecCCCCceeEEEeccCCCHHHHHHHHHHHHHHHHHHH
Confidence 0123556778888776654 47999999999999999999999999996 99999999999999999999999999999
Q ss_pred HHcCceEEecccccCCCCCCceeeeeecccccC-C----C--Cch-hHHHHHHHHHHHHHHHhhccccc---cccccCCC
Q 018391 226 EIAGVVLSFDPKPIKGDWNGAGAHANYSTKSMR-N----D--GGI-DVIKKAIEKLGKRHGEHIAAYGE---GNERRLTG 294 (356)
Q Consensus 226 ~~~Gl~aTFmpKP~~~~~~GsG~H~H~Sl~~~~-~----~--~g~-~~~~~fiaGl~L~h~~al~a~~~---nsYkRl~p 294 (356)
++||++|||||||+.+ .+|||||+|+|||+.. | + .++ .++++||+|| |+|+++|+||++ ||||||+|
T Consensus 247 ~~hGl~atFmpKP~~g-~~GSG~H~h~Sl~~~g~Nlf~~~~~~~ls~~~~~~iaGl-l~h~~~l~a~~ap~~NSYkRL~p 324 (468)
T 1f52_A 247 HRFGKTATFMPKPMFG-DNGSGMHCHMSLAKNGTNLFSGDKYAGLSEQALYYIGGV-IKHAKAINALANPTTNSYKRLVP 324 (468)
T ss_dssp HHTTCEEECCSCSSTT-SCCCCEEEEEEEEETTEETTBCSSGGGBCHHHHHHHHHH-HHTHHHHHHHHSCSGGGGGTSSS
T ss_pred HHhCCEEEEeCCCCCC-CCCCCcceeeccccCCCcccCCCCcchHHHHHHHHHHHH-HHHHHHhHhHhcCCccchhccCC
Confidence 9999999999999994 7999999999999732 1 1 234 3789999999 999999999975 99999999
Q ss_pred CCCCCCCCceeeccCCCcceEeeccCCCCCCccEEEecCCCCCCCHHHHHHHHHHHhhcCC
Q 018391 295 RHETADINTFSWGVANRGASIRVGRDTEKEGKGYFEDRRPASNMDPYVVTSMIAETTILWK 355 (356)
Q Consensus 295 ~~~ap~~~~~~WG~~NR~a~vRvp~~~~~~~~~riE~R~~da~aNPYLalAailaAgl~g~ 355 (356)
++||| ++++||.+||+++||||... +++++|||+|+||++|||||++||+|+|||+|+
T Consensus 325 g~eAP--~~i~wg~~NRsa~iRiP~~~-~~~~~riE~R~pd~~aNPYLalaailaagL~GI 382 (468)
T 1f52_A 325 GYEAP--VMLAYSARNRSASIRIPVVA-SPKARRIEVRFPDPAANPYLCFAALLMAGLDGI 382 (468)
T ss_dssp CSSCC--CEEEEESSCTTEEEECCCCS-CGGGCCEEECCCCTTSCHHHHHHHHHHHHHHHH
T ss_pred CCcCc--CcceeccCCcccceeeCCCC-CCCCCEEEeCCCCCCCCHHHHHHHHHHHHHHHH
Confidence 99999 79999999999999999642 224579999999999999999999999999985
No 9
>2j9i_A Glutamate-ammonia ligase domain-containing protein 1; 17.00A {Mus musculus}
Probab=100.00 E-value=4.2e-77 Score=594.56 Aligned_cols=307 Identities=15% Similarity=0.157 Sum_probs=259.2
Q ss_pred CcEEEEEEEEEeCCCCcceeeEEeCCCCCCCCCCCCcccccCCC-C-CCC-CCCCccEEEEee--eceecCC-CCCCeEE
Q 018391 16 TEKVIAEYVWIGGSGMDLRSKARTLPAPTTDPTKLPKWNYDGSS-T-NQA-PGDDSEVILYPQ--TVFKDPF-RRGNNIL 89 (356)
Q Consensus 16 ~~~~~v~~~~~dg~G~~~rgK~~~~~~~~~~~~~~~~~~~dgs~-~-g~~-~~~~~D~~l~PD--t~~~~Pw-~~~~~a~ 89 (356)
.++.+|++.|+|..| .+|||.++++.+ +.+.+ +++|||++ + ++. .+..+|++|+|| |++++|| .+ ++++
T Consensus 12 ~~i~~v~~~~~D~~G-~~r~k~ip~~~~-~~~~~--g~~~~gs~~~~~~~~~~~~sD~~l~PD~~T~~~~Pw~~~-~~a~ 86 (421)
T 2j9i_A 12 HAAAFVRFEATDAAG-ASRSKSIPAQFF-EKVIH--ARGYLEDGEVNAGAAGAAASDIVLMPELSTAAVAAAAAA-ATAA 86 (421)
T ss_dssp TTCSEEEEEEECSSS-CEEEEEEEGGGC-CTTHH--HHCEEECGGGSTTTCCTTCCCEEEEECSSCCEECTTSSS-SEEE
T ss_pred CCCCEEEEEEECCCC-CEEEEEEEHHHH-HHhhc--CCeeecccCcccccccCCCCCEEEEEecCceEEcCcCCC-CeEE
Confidence 478889999999999 999999998876 43332 57899874 3 453 344599999999 7999999 66 4999
Q ss_pred EEEEeecCCCccCCCChHHHHHHHHcCcccCCC--cceEeeeeeEEEeccCCCCCCCCCCCCCCCCCCCCccccccchhh
Q 018391 90 VMCDAYTPAGEPIPTNKRFNAAKVFGHPDVVAE--EPWYGIEQEYTLLQKDINWPLGWPVGGYPGPQGPYYCGVGADKAL 167 (356)
Q Consensus 90 V~cd~~~~~G~P~~~~PR~~Lkr~~~~l~~~G~--~~~~g~E~EF~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (356)
|+|| ||+|++.|||++|||++++++++|+ ++++|+|+|||||+++... .+ . ..||+..+...
T Consensus 87 v~cd----dG~P~~~~pR~iLk~~~~~~~~~G~~d~~~~g~E~EF~l~~~~~~~-~~-----~----p~y~~~~~~~~-- 150 (421)
T 2j9i_A 87 VICD----GGAAAAASPRYIARAALAQLQAAGAAAGLLSAFIADFCIFGVPEVI-NS-----K----TISFPASTTAA-- 150 (421)
T ss_dssp EEEE----EESSCSCCHHHHHHHHHHHHHHTTSCSEECCEECCCCEEESCCEEE-EC-----S----SCEEEECCCTT--
T ss_pred EEcC----CCCCCCCChHHHHHHHHHHHHhcCCccCceEEeeeEEEEEecCCCC-CC-----C----CCcCCCCcccc--
Confidence 9999 7999999999999999999999999 9999999999999875310 00 0 12444443332
Q ss_pred HHHHHHHHHHHHHHcCceeeeecCCCCCCcEEEEeCCCc-hhhhhHHHHHHHHHHHHHHHHcCceEEecccccCCCCCCc
Q 018391 168 GRDIVNSHYKACLYAGINISGINGEVMPGQWEFQVGPCV-GISSGDQLWMARYILERITEIAGVVLSFDPKPIKGDWNGA 246 (356)
Q Consensus 168 ~~~~~~~l~~~l~~~Gi~ve~~~~E~gpGQ~Ei~l~~~~-~l~aaD~~~~~k~~ik~vA~~~Gl~aTFmpKP~~~~~~Gs 246 (356)
.++++++++++|+ +||+|+++|||+|||||||++.|.+ ++++||++++||++||+||++||++||||||| + ++||
T Consensus 151 ~~~~~~~i~~~l~-~Gi~ve~~h~E~apgQ~Ei~~~~~~~~l~aaD~~~~~k~~vk~vA~~~G~~atFmpKP--~-~~GS 226 (421)
T 2j9i_A 151 AADQPQEAAAGGA-AGAAAGAAGGAAAAGAAEICFLPEAAGAAAADNAFTLRTGLQEVARRYNAIASAAAAA--A-AAAA 226 (421)
T ss_dssp CTTGGGSCCTTCC-CSCCCBTTBCCCCCSSCCTTTTTTTCCSCTTTHHHHHHHHHHHHHHTTTCEEECCTTS--S-TTSC
T ss_pred hhHHHHHHHHHHh-CCCCeEEeecCCCCCcEEEecCCCChHHHHHHHHHHHHHHHHHHHHHhCCEEEEcCCc--C-CCCC
Confidence 2567788889999 9999999999999999999999999 99999999999999999999999999999999 3 7999
Q ss_pred eeeeeecccccC----C----C--Cchh-HHHHHHHHHHHHHHHhhccccc---cccccCCCCCCCCCCCce---eeccC
Q 018391 247 GAHANYSTKSMR----N----D--GGID-VIKKAIEKLGKRHGEHIAAYGE---GNERRLTGRHETADINTF---SWGVA 309 (356)
Q Consensus 247 G~H~H~Sl~~~~----~----~--~g~~-~~~~fiaGl~L~h~~al~a~~~---nsYkRl~p~~~ap~~~~~---~WG~~ 309 (356)
|| +|+|||+.+ | + .+++ .+++||||| |+|+++++||++ ||||| +.|+| +++ +||.+
T Consensus 227 G~-~h~Sl~~~~~~G~nlf~~~~~~~ls~~~~~~iaGi-l~h~~~l~a~~~p~~NSYk~---~~~ap--~~~~~~~wG~~ 299 (421)
T 2j9i_A 227 GA-GSHSIWDVGAAGTNAFAGASGARATLTGAKWLAGL-LAAAAAAAAAAAAAAAAAAA---AAAGA--AAAAATAWGAA 299 (421)
T ss_dssp CC-BCCEEECEEETTEESSCSSSGGGCCHHHHHHHHHH-HHHHHHHHHHHTCSHHHHHH---TSSST--TCCCEEEEESS
T ss_pred ce-EEEeccccCCCCceeecCCCCccccHHHHHHHHHH-HHHHHHHHHHhCCCccccCC---CCCCC--cCeeeeeeecC
Confidence 99 999999631 1 1 1343 789999999 999999999985 99996 45666 566 99999
Q ss_pred CCcceEeeccCCCCCCccEEEecCCCCCCCHHHHHHHHHHHhhcCC
Q 018391 310 NRGASIRVGRDTEKEGKGYFEDRRPASNMDPYVVTSMIAETTILWK 355 (356)
Q Consensus 310 NR~a~vRvp~~~~~~~~~riE~R~~da~aNPYLalAailaAgl~g~ 355 (356)
||+++||||.. .+++++|||+|+||++|||||++||+|+|||+|+
T Consensus 300 NRsa~iRip~~-~~~~~~riE~R~pd~~aNPYLa~aailaagl~GI 344 (421)
T 2j9i_A 300 AAACALNIAAA-AAAKGAQIENKAGAAAANPYLVLAATVAAGLDGI 344 (421)
T ss_dssp CTTEEEEEECC-SSGGGCEEEECSCBTTSCHHHHHHHHHHHHHHHH
T ss_pred CCccceeeccc-CCCCCCEEEEcCCCCCCChHHHHHHHHHHHhhhh
Confidence 99999999975 1234579999999999999999999999999985
No 10
>3o6x_A Glutamine synthetase; type III, beta barrel,dodecamer, ligas; HET: P3S ADP; 3.50A {Bacteroides fragilis}
Probab=100.00 E-value=6.1e-60 Score=486.75 Aligned_cols=282 Identities=18% Similarity=0.196 Sum_probs=210.9
Q ss_pred cccCCCC---CCCCCCCccEEEEee--e-ceecCCCCCCeEEEEEEeecCCCc------cCCCChHHHHHHHHcCcccCC
Q 018391 54 NYDGSST---NQAPGDDSEVILYPQ--T-VFKDPFRRGNNILVMCDAYTPAGE------PIPTNKRFNAAKVFGHPDVVA 121 (356)
Q Consensus 54 ~~dgs~~---g~~~~~~~D~~l~PD--t-~~~~Pw~~~~~a~V~cd~~~~~G~------P~~~~PR~~Lkr~~~~l~~~G 121 (356)
-.||||+ |+..+.++|+++.|| + .++.| +|..+.|.+++.+|+ |+..|||+++|++++.++..|
T Consensus 127 E~DgSS~p~gG~r~t~earg~~~~D~ts~afi~~----~TL~IP~~f~s~~Ge~ld~ktPL~rsPR~ilk~A~~~Lk~~G 202 (729)
T 3o6x_A 127 EPDASSFPNGGIRNTFEARGYTAWDGSSPAFVVD----TTLCIPTIFISYTGEALDYKTPLLKALAAVDKAATEVCQLFD 202 (729)
T ss_dssp ---------------------CCBCSSSCCEEET----TEEECCBCCC----CCCBSHHHHHHHHHHHHHHHHHHHHTSS
T ss_pred CCccccCCCccchhhhhccCceecCCCCCeEEeC----CeEEEEEEEEeCCCCcCCCCCchhhCHHHHHHHHHHHHHHcC
Confidence 4689988 677778899999999 3 66776 399999999987775 688899999999999999999
Q ss_pred C-----cceEeeeeeEEEeccCCC--CCC----CCCCCCCCCCCC-----CCccccccchhhHHHHHHHHHHHHHHcCce
Q 018391 122 E-----EPWYGIEQEYTLLQKDIN--WPL----GWPVGGYPGPQG-----PYYCGVGADKALGRDIVNSHYKACLYAGIN 185 (356)
Q Consensus 122 ~-----~~~~g~E~EF~l~~~~~~--~~~----~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~l~~~l~~~Gi~ 185 (356)
. ++.+|+|+|||||++... .+. |...-+.....+ +||...+ +. ..+++.+|.+.|+++||+
T Consensus 203 ~d~~~v~~~~G~E~EFFLfd~~~~~~r~dl~~tGrtl~G~~P~kgq~l~d~Yf~~~p-d~--~~~~~~di~~~L~~~GI~ 279 (729)
T 3o6x_A 203 KNITRVFTNLGWEQEYFLVDTSLYNARPDLRLTGRTLMGHSSAKDQQLEDHYFGSIP-PR--VTAFMKELEIECHKLGIP 279 (729)
T ss_dssp SCCCCEEEEEEEEECEEEEEHHHHHSCTTHHHHSSCSCCCC--------------CC-HH--HHHHHHHHHHHHHHHTCC
T ss_pred CCCccceEEEEeccEEEEEecchhccCcccccccccccCCCCCCCCCCCCccCCCCc-hh--HHHHHHHHHHHHHHCCCC
Confidence 7 699999999999987420 000 110001111222 6776555 22 478999999999999999
Q ss_pred eeeecCCCCCCcEEEEeCCCchhhhhHHHHHHHHHHHHHHHHcCceEEecccccCCCCCCceeeeeecccccC--C----
Q 018391 186 ISGINGEVMPGQWEFQVGPCVGISSGDQLWMARYILERITEIAGVVLSFDPKPIKGDWNGAGAHANYSTKSMR--N---- 259 (356)
Q Consensus 186 ve~~~~E~gpGQ~Ei~l~~~~~l~aaD~~~~~k~~ik~vA~~~Gl~aTFmpKP~~~~~~GsG~H~H~Sl~~~~--~---- 259 (356)
|++.|+|+|||||||++.|.++++|||+++++|++||+||++||++|||||||+. +.+|||+|+|+|||+.+ |
T Consensus 280 ve~~H~EvaPGQ~EI~~~~~~al~AAD~~~l~K~vvK~VA~~hGl~ATFMPKP~~-g~nGSG~HvH~SL~~~~G~NLF~~ 358 (729)
T 3o6x_A 280 VKTRHNEVAPNQFELAPIFENCNLANDHNQLVMDLMKRIARKHHFAVLFHEKPYN-GVNGSGKHNNWSLCTDTGINLFAP 358 (729)
T ss_dssp EEEECBCSSTTEECCEECCEEHHHHHHHHHHHHHHHHHHHHHTTEEEECSSCSST-TSCCCBEEEEEEEEETTCCCSSCC
T ss_pred eEEeecCCCCCceEeccCCChHHHHHHHHHHHHHHHHHHHHHhCCEEEEecccCC-CCCCCcceeeccccCCCCCcCCCC
Confidence 9999999999999999999999999999999999999999999999999999999 48999999999999742 1
Q ss_pred CC---c---h-hHHHHHHHHHHHHHHHhhccccc---cccccCCCCCCCCCCCc----------------ee--------
Q 018391 260 DG---G---I-DVIKKAIEKLGKRHGEHIAAYGE---GNERRLTGRHETADINT----------------FS-------- 305 (356)
Q Consensus 260 ~~---g---~-~~~~~fiaGl~L~h~~al~a~~~---nsYkRl~p~~~ap~~~~----------------~~-------- 305 (356)
++ + + ..+++||+|| |+|+++|+||++ ||| || |++|||. + +.
T Consensus 359 ~d~~~~~~~~s~~~~~fIaGV-LkHa~aL~A~~aPt~NSY-RL-~g~EAP~--~iisi~lG~~l~~vl~~i~~~~~g~~~ 433 (729)
T 3o6x_A 359 GKNPKGNMLFLTFLVNVLMMV-HKNQDLLRASIMSAGNSH-RL-GANEAPP--AILSIFLGSQLSATLDEIVRQVTNSKM 433 (729)
T ss_dssp CSSTTTCHHHHHHHHHHHHHH-HHTHHHHHHHSCCHHHHT-TS-SSSSCCC--SCCCEECCHHHHHHHHCC---------
T ss_pred CCCccchhhHHHHHHHHHHHH-HHhHHHHHHHhCCCcccc-cc-CCCcCCc--hhhhhhhhHHHHHHHHHHHhhccCCCC
Confidence 11 1 1 2468999999 999999999986 999 99 9999994 4 23
Q ss_pred ---------ec------------cCCCcceEeeccCCCCCCccEEEecCCCCCCC---HHHHHHHHHHHhhcCC
Q 018391 306 ---------WG------------VANRGASIRVGRDTEKEGKGYFEDRRPASNMD---PYVVTSMIAETTILWK 355 (356)
Q Consensus 306 ---------WG------------~~NR~a~vRvp~~~~~~~~~riE~R~~da~aN---PYLalAailaAgl~g~ 355 (356)
|| .+|||+++|+.+ .|||+|.+|+++| |||++++++|+||+|+
T Consensus 434 ~~~~~~~~~~Gv~~lP~~~~d~~drNRTspfaftG-------nrfEfR~~Gss~n~a~P~l~lnaivA~~L~gi 500 (729)
T 3o6x_A 434 TPEEKTTLKLGIGRIPEILLDTTDRNRTSPFAFTG-------NRFEFRAAGSSANCAAAMIAINAAMANQLNEF 500 (729)
T ss_dssp ------------------------CCCSSSSCBCS-------SSEEETTSBSSSCHHHHHHHHHHHHHHHHHHH
T ss_pred CccccccccCCcccCCCCccCcCccccCCCccccC-------CeeEEecCCcccchhhHHHHHHHHHHHHHHHH
Confidence 34 499999999873 5899999999999 9999999999999874
No 11
>1r8g_A Hypothetical protein YBDK; structural genomics, unknown function, carboxylate-amine ligase, structure 2 function project, S2F; 2.15A {Escherichia coli} SCOP: d.128.1.3 PDB: 1tt4_A
Probab=98.16 E-value=3.2e-05 Score=75.32 Aligned_cols=129 Identities=13% Similarity=0.094 Sum_probs=83.2
Q ss_pred cceEeeeeeEEEeccCCCCCCCCCCCCCCCCCCCCccccccchhhHHHHHHHHHHHHHHcCcee--eeecCCCCCCcEEE
Q 018391 123 EPWYGIEQEYTLLQKDINWPLGWPVGGYPGPQGPYYCGVGADKALGRDIVNSHYKACLYAGINI--SGINGEVMPGQWEF 200 (356)
Q Consensus 123 ~~~~g~E~EF~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~Gi~v--e~~~~E~gpGQ~Ei 200 (356)
...+|+|.||++++.+.. .+. ++ . .++++ ..+=.+ ..+..|..-+|.|+
T Consensus 11 ~~~~GiE~E~~~Vd~~~g---------~~~---~~-~---------~~~l~-------~~~~~~~~~~it~E~~~~qlEl 61 (372)
T 1r8g_A 11 PFTLGIELEMQVVNPPGY---------DLS---QD-S---------SMLID-------AVKNKITAGEVKHDITESMLEL 61 (372)
T ss_dssp TTCEEEEEEEEEEETTTT---------EEC---SC-C---------HHHHT-------TTSSSCSSSEEEECSSSSEEEE
T ss_pred CCceEEEEEEeeECCCCC---------CcC---cc-H---------HHHHH-------hchhcccCCcccchhhccEEEe
Confidence 468999999999998531 111 11 0 12222 222111 46888999999999
Q ss_pred EeCCCc-hhhhhHHHHHHHHHHHHHHHHcCceE---Eecc-----------ccc------------CCCCCCceeeeeec
Q 018391 201 QVGPCV-GISSGDQLWMARYILERITEIAGVVL---SFDP-----------KPI------------KGDWNGAGAHANYS 253 (356)
Q Consensus 201 ~l~~~~-~l~aaD~~~~~k~~ik~vA~~~Gl~a---TFmp-----------KP~------------~~~~~GsG~H~H~S 253 (356)
+..|.. .-++.+.+-..+..++++|.++|+.. ++.| ||. . .+.=+|+|+|+|
T Consensus 62 ~t~p~~~~~e~~~~L~~~~~~~~~~a~~~g~~l~~~g~~P~~~~~~~~i~~~~rY~~l~~~~g~~~~-~~~i~g~hvhv~ 140 (372)
T 1r8g_A 62 ATDVCRDINQAAGQFSAMQKVVLQAATDHHLEICGGGTHPFQKWQRQEVCDNERYQRTLENFGYLIQ-QATVFGQHVHVG 140 (372)
T ss_dssp ECCSBSSHHHHHHHHHHHHHHHHHHHHHTTCEEECCSBCSSCCC----------------CCGGGGC-SCCBCEEEEEEE
T ss_pred cCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCEEEecCCCCCCCCccCCCCCchHHHHHHHHHHHHHH-hhceeeEEEEeC
Confidence 999975 45699999999999999999988765 2323 332 1 123499999999
Q ss_pred ccccCCCCchhHHHHHHHHHHHHHHHhhccccccc
Q 018391 254 TKSMRNDGGIDVIKKAIEKLGKRHGEHIAAYGEGN 288 (356)
Q Consensus 254 l~~~~~~~g~~~~~~fiaGl~L~h~~al~a~~~ns 288 (356)
+-+. ..+-..+.-+ +.+.|.++|+++||
T Consensus 141 ~~~~------~~~~~~~~~~-~~~~p~l~aL~anS 168 (372)
T 1r8g_A 141 CASG------DDAIYLLHGL-SRFVPHFIALSAAS 168 (372)
T ss_dssp CSSH------HHHHHHHHHH-HTTHHHHHHHHCCB
T ss_pred CCCH------HHHHHHHHHH-HHHHHHHHHHHhCC
Confidence 9642 1122334445 66777777776543
No 12
>2gwd_A Glutamate cysteine ligase; disulfide bridges, glutathione biosynthesis, beta-hairpin, R regulation; HET: GLU; 2.09A {Brassica juncea} PDB: 2gwc_A*
Probab=98.00 E-value=0.00012 Score=73.17 Aligned_cols=151 Identities=17% Similarity=0.080 Sum_probs=95.9
Q ss_pred hHHHHHHHHcCcccCCCcceEeeeeeEEEeccCCCCCCCCCCCCCCCCCCCCccccccchhhHHHHHHHHHHHHHHcCce
Q 018391 106 KRFNAAKVFGHPDVVAEEPWYGIEQEYTLLQKDINWPLGWPVGGYPGPQGPYYCGVGADKALGRDIVNSHYKACLYAGIN 185 (356)
Q Consensus 106 PR~~Lkr~~~~l~~~G~~~~~g~E~EF~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~Gi~ 185 (356)
.+..|.+.++.-...+=...+|+|.||++++.++. .+. ++ . ...++++.+.. ..|..
T Consensus 17 ~~~~l~~~~~~~~~~~~~~~iGvE~E~~lVd~~~~---------~~~---~~-~-------~~~~lL~~l~~---~~g~~ 73 (449)
T 2gwd_A 17 TREDLIAYLASGCKSKEKWRIGTEHEKFGFEVNTL---------RPM---KY-D-------QIAELLNSIAE---RFEWE 73 (449)
T ss_dssp CHHHHHHHHHTTCCCGGGCCEEEEEEEEEEETTTC---------CBC---CH-H-------HHHHHHHHHHH---HHTCE
T ss_pred CHHHHHHHHHhcCCCCCCCeEEEEeEEEeeecCCC---------CCC---Ch-H-------HHHHHHHHHHH---hhccC
Confidence 45556666665433455789999999999997531 111 11 0 12455554432 23321
Q ss_pred -------e-------eeecCCCCCCcEEEEeCCCch-hhhhHHHHHHHHHHHHHHHHcCceE---Ee-----------cc
Q 018391 186 -------I-------SGINGEVMPGQWEFQVGPCVG-ISSGDQLWMARYILERITEIAGVVL---SF-----------DP 236 (356)
Q Consensus 186 -------v-------e~~~~E~gpGQ~Ei~l~~~~~-l~aaD~~~~~k~~ik~vA~~~Gl~a---TF-----------mp 236 (356)
+ ..+..|.+ +|+|++..|... -++.+.+...+..++++|+++|+.. .+ +|
T Consensus 74 ~~~~~~~~~~l~~~~~~i~~E~~-~qiEl~t~p~~~~~e~~~~l~~~~~~~~~~a~~~g~~l~~~G~~P~~~~~~~~~~~ 152 (449)
T 2gwd_A 74 KVMEGDKIIGLKQGKQSISLEPG-GQFELSGAPLETLHQTCAEVNSHLYQVKAVAEEMGIGFLGMGFQPKWRREDIPTMP 152 (449)
T ss_dssp EEEETTEEEEEEETTEEEEECTT-CCEEEECCCBSSHHHHHHHHHHHHHHHHHHHHHHTEEEECCSBCSSCCGGGSCCCS
T ss_pred ccccccccccccCCCceEEecCC-ceEEecCCCcCCHHHHHHHHHHHHHHHHHHHHHcCCceeeccCCCCCCccccCCCC
Confidence 1 12777776 999999999754 4788999999999999999998765 12 33
Q ss_pred ccc----------CCCCC-------CceeeeeecccccCCCCchhHHHHHHHHHHHHHHHhhccccccc
Q 018391 237 KPI----------KGDWN-------GAGAHANYSTKSMRNDGGIDVIKKAIEKLGKRHGEHIAAYGEGN 288 (356)
Q Consensus 237 KP~----------~~~~~-------GsG~H~H~Sl~~~~~~~g~~~~~~fiaGl~L~h~~al~a~~~ns 288 (356)
||. .+ .. -+|+|+|+++-+. ..+...+..+ +...|.++|+++||
T Consensus 153 ~~RY~~m~~~~~~~g-~~g~~mm~~~~g~qVhl~~~~~------~~~~~~~~~~-~~~~P~llALsAnS 213 (449)
T 2gwd_A 153 KGRYDIMRNYMPKVG-SLGLDMMLRTCTVQVNLDFSSE------ADMIRKFRAG-LALQPIATALFANS 213 (449)
T ss_dssp CHHHHHHHHHGGGTC-SSHHHHHHHBCEEEEEECCSSH------HHHHHHHHHH-HHHHHHHHHHHCCB
T ss_pred chHHHHHHHHHHHhc-hhHHHHhhcceeeEEEecCCCH------HHHHHHHHHH-HHHHHHHHHHHhCC
Confidence 332 11 22 4789999998641 1233344555 67778888876544
No 13
>3ln6_A Glutathione biosynthesis bifunctional protein GSH; gamma-glutamyl cysteine ligase domain, ATP-grAsp domain, HYB enzyme; 2.95A {Streptococcus agalactiae serogroup V}
Probab=88.66 E-value=1.3 Score=46.75 Aligned_cols=98 Identities=12% Similarity=-0.101 Sum_probs=54.9
Q ss_pred eecCCCCCCcEEEEeCCCc-hhhhhHHHHHHHHHHHHHH-HHcCceEEeccc-------ccCC-----------------
Q 018391 188 GINGEVMPGQWEFQVGPCV-GISSGDQLWMARYILERIT-EIAGVVLSFDPK-------PIKG----------------- 241 (356)
Q Consensus 188 ~~~~E~gpGQ~Ei~l~~~~-~l~aaD~~~~~k~~ik~vA-~~~Gl~aTFmpK-------P~~~----------------- 241 (356)
.+.+|..-.|.|+...+.. .-++-+.+...+..+.+.+ ....+-+.=||= |...
T Consensus 54 ~i~~d~~es~lE~~Tpv~~~~~~~~~~L~~l~~~~~~~~~~~e~lw~~smp~~l~~~~i~ia~~~~~~~~~Yr~~l~~ry 133 (750)
T 3ln6_A 54 YIQTDYSEPQLELITPIAKDSQEAIRFLKAISDVAGRSINHDEYLWPLSMPPKVREEDIQIAQLEDAFEYDYRKYLEKTY 133 (750)
T ss_dssp SEEESSBSSEEEEECCCBSSHHHHHHHHHHHHHHHHHHSCTTEEECCSSSCSSCCTTTCCBCCCSCHHHHHHHHHHHHHH
T ss_pred CccchhhhhheeeeCcCCCCHHHHHHHHHHHHHHHHHHhcCCCceeeecCCCCCCCCCCCcccCCCCCcHHHHHHHHHHh
Confidence 4666777777777777763 4456666666666666664 322222222210 2220
Q ss_pred ---CCCCceeeeeecccccC--------CCCchhHHH-----HHHHHHHHHHHHhhccccc
Q 018391 242 ---DWNGAGAHANYSTKSMR--------NDGGIDVIK-----KAIEKLGKRHGEHIAAYGE 286 (356)
Q Consensus 242 ---~~~GsG~H~H~Sl~~~~--------~~~g~~~~~-----~fiaGl~L~h~~al~a~~~ 286 (356)
.+.=+|+|+|+|+-+.. +......++ ..+-++ +.+.+.|++|+.
T Consensus 134 g~~~q~i~G~Hvn~~~~~~~~~~l~~~~~~~~~~~~~~~~y~~l~r~~-~r~~w~l~~L~g 193 (750)
T 3ln6_A 134 GKLIQSISGIHYNLGLGQELLTSLFELSQADNAIDFQNQLYMKLSQNF-LRYRWLLTYLYG 193 (750)
T ss_dssp CTGGGGCCCEEEEEEECHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHH-HHHHHHHHHHTC
T ss_pred ChhhceeeeEEEEecCChHHHHHHhhccccchHHHHhhhHHHHHHHHH-HhHHHHHHHHhh
Confidence 12347899999996521 001111111 236667 788899998875
No 14
>2fao_A Probable ATP-dependent DNA ligase; polymerase, primase, NHEJ, hydrolase/transferase complex; 1.50A {Pseudomonas aeruginosa} PDB: 2faq_A* 2far_A*
Probab=84.33 E-value=10 Score=35.54 Aligned_cols=125 Identities=17% Similarity=0.214 Sum_probs=79.1
Q ss_pred HHHcC-ceeeeecCCCC----CCcEEEEeCCCchhhhhHHHHHHHHHHHHHHHHcCceEEecccccCCCCCCceeeeeec
Q 018391 179 CLYAG-INISGINGEVM----PGQWEFQVGPCVGISSGDQLWMARYILERITEIAGVVLSFDPKPIKGDWNGAGAHANYS 253 (356)
Q Consensus 179 l~~~G-i~ve~~~~E~g----pGQ~Ei~l~~~~~l~aaD~~~~~k~~ik~vA~~~Gl~aTFmpKP~~~~~~GsG~H~H~S 253 (356)
+.++| |++-.+..-.+ |.+.-|.|.|.+++.-+|-+-.++ .+|++-.+.|+. +| ||- .-|.|+|+.+-
T Consensus 111 ~aq~~~lE~H~w~~~~~~~~~PD~lvfDLDP~~~~~f~~v~~aA~-~~r~~L~~lGL~-~f-~KT----SGgkGlHV~vP 183 (309)
T 2fao_A 111 AVQMGSIEFHTWNASLANLERPDRFVLDLDPDPALPWKRMLEATQ-LSLTLLDELGLR-AF-LKT----SGGKGMHLLVP 183 (309)
T ss_dssp HHHTTEEEEEECSSCTTCTTSCSEEEEEEEECTTSCHHHHHHHHH-HHHHHHHHHTCC-CE-EEE----CSSSSEEEEEE
T ss_pred HHHhCcEEeeCCcccCCCCCCCCEEEEECCCCcCCCHHHHHHHHH-HHHHHHHHcCCc-ee-eEc----cCCCeeEEEEE
Confidence 45666 77666654443 899999999998876555544444 489999999996 34 662 24799999999
Q ss_pred ccccCCCCchhHHHHHHHHHHHHHHHhhcc--ccccccccCCCCCCCCCCCceeeccCCCcceEeecc
Q 018391 254 TKSMRNDGGIDVIKKAIEKLGKRHGEHIAA--YGEGNERRLTGRHETADINTFSWGVANRGASIRVGR 319 (356)
Q Consensus 254 l~~~~~~~g~~~~~~fiaGl~L~h~~al~a--~~~nsYkRl~p~~~ap~~~~~~WG~~NR~a~vRvp~ 319 (356)
|... -+....+.|...+ -+++..... ++.+.-|....|. .++-|-.|+|...+-.|-
T Consensus 184 l~~~---~~~~~vr~fa~~~-A~~l~~~~Pd~~t~~~~k~~R~gk-----IfiDy~qN~~g~T~vapY 242 (309)
T 2fao_A 184 LERR---HGWDEVKDFAQAI-SQHLARLMPERFSAVSGPRNRVGK-----IFVDYLRNSRGASTVAAY 242 (309)
T ss_dssp CCSC---SCHHHHHHHHHHH-HHHHHHHCTTTEECSCSGGGSTTS-----EEEECGGGSTTCCEECTT
T ss_pred cCCC---CCHHHHHHHHHHH-HHHHHHhCcceeehhhhHhhCCCC-----EEEeCccCCCCCeEEccC
Confidence 9542 2344556666666 344433332 3334444444332 577777777776665553
No 15
>3ln7_A Glutathione biosynthesis bifunctional protein GSH; gamma-glutamylcysteine ligase domain, ATP-grAsp domain, HYBR enzyme, ATP-binding; 3.20A {Pasteurella multocida}
Probab=83.61 E-value=3.7 Score=43.30 Aligned_cols=38 Identities=16% Similarity=0.050 Sum_probs=23.7
Q ss_pred eecCCCCCCcEEEEeCCC-chhhhhHHHHHHHHHHHHHH
Q 018391 188 GINGEVMPGQWEFQVGPC-VGISSGDQLWMARYILERIT 225 (356)
Q Consensus 188 ~~~~E~gpGQ~Ei~l~~~-~~l~aaD~~~~~k~~ik~vA 225 (356)
.+.+|..-.|.|+...+. +.-++-+.+-..+.++.+.+
T Consensus 53 ~i~td~ses~lE~iTpv~~~~~~~~~~L~~l~~~~~~~~ 91 (757)
T 3ln7_A 53 YIQTDFAESQLELITPPTKKLEDTFRWLSVIHEVVQRSL 91 (757)
T ss_dssp SEECSSSTTEEEEEEEEESSHHHHHHHHHHHHHHHHHHS
T ss_pred CCCchhhhhheeeeCcCCCCHHHHHHHHHHHHHHHHHHh
Confidence 456677777777777765 34456666666666665554
No 16
>1nxi_A Conserved hypothetical protein VC0424; structural genomics, AB sandwich, COG 3076, ATCC NO. 51394D, NESG target OP3, PSI; NMR {Vibrio cholerae} SCOP: d.58.47.1
Probab=80.15 E-value=4.2 Score=33.31 Aligned_cols=89 Identities=11% Similarity=0.013 Sum_probs=59.1
Q ss_pred HHHHcCcccCCCcceEeeeeeEEEeccCCCCCCCCCCCCCCCCCCCCccccccchhhHHHHHHHHHHHHHHcCceeeeec
Q 018391 111 AKVFGHPDVVAEEPWYGIEQEYTLLQKDINWPLGWPVGGYPGPQGPYYCGVGADKALGRDIVNSHYKACLYAGINISGIN 190 (356)
Q Consensus 111 kr~~~~l~~~G~~~~~g~E~EF~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~Gi~ve~~~ 190 (356)
+++++.|.+.|-.+..-.++||++.=++. +-++.+...+.+.|..|+...
T Consensus 22 ~~Vl~~L~e~Gddl~~~r~IEH~~~F~de------------------------------~~~e~~a~~~~~~Gy~v~~~~ 71 (132)
T 1nxi_A 22 RDIIQALLEDGSDPDALYEIEHHLFAEDF------------------------------DKLEKAAVEAFKMGFEVLEAE 71 (132)
T ss_dssp HHHHHHHHHHTCCTTSCEEEEEEEEESCH------------------------------HHHHHHHHHHHHHTCCCBCCC
T ss_pred HHHHHHHHhCCCCcCCCeEEEEEEEeCCH------------------------------HHHHHHHHHHHHCCCEEEecc
Confidence 45677777889999999999998874321 122333344577899887433
Q ss_pred C---CCCCCcEEEEeCCCchhhhhHHHHHHHHHHHHHHHHcCc
Q 018391 191 G---EVMPGQWEFQVGPCVGISSGDQLWMARYILERITEIAGV 230 (356)
Q Consensus 191 ~---E~gpGQ~Ei~l~~~~~l~aaD~~~~~k~~ik~vA~~~Gl 230 (356)
. |-|-..|++.+.-...+...+=.-....+++ +|+++|-
T Consensus 72 ~~e~e~g~~~~~~~i~~~~~l~~~~I~~~~~~L~~-lA~~~~G 113 (132)
T 1nxi_A 72 ETEDEDGNKLLCFDATMQSALDAKLIDEQVEKLVN-LAEKFDI 113 (132)
T ss_dssp CBCCSSCSSBEEEEEEEEECSCHHHHHHHHHHHHH-HHHHHTC
T ss_pred cccCCCCceeEEEEEEEeccCCHHHHHHHHHHHHH-HHHHhCc
Confidence 2 4444579999998888876655555555555 7777654
No 17
>1zpv_A ACT domain protein; structural genomics, PSI, protein structure INIT midwest center for structural genomics, MCSG, unknown funct; 1.90A {Streptococcus pneumoniae} SCOP: d.58.18.7
Probab=75.80 E-value=3 Score=30.90 Aligned_cols=66 Identities=15% Similarity=0.156 Sum_probs=48.6
Q ss_pred HHHHHHHHHHHHcCceeeeecCCCCCCcEEEEeCCCchhhhhHHHHHHHHHHHHHHHHcCceEEeccc
Q 018391 170 DIVNSHYKACLYAGINISGINGEVMPGQWEFQVGPCVGISSGDQLWMARYILERITEIAGVVLSFDPK 237 (356)
Q Consensus 170 ~~~~~l~~~l~~~Gi~ve~~~~E~gpGQ~Ei~l~~~~~l~aaD~~~~~k~~ik~vA~~~Gl~aTFmpK 237 (356)
.++.++...+.+.|++|..++.....|.+.+.+.-.- ...+++-.++..+++++.++|+..++-+.
T Consensus 17 Gila~vt~~la~~~~NI~~i~~~~~~~~~~~~i~v~~--~~~~~l~~l~~~L~~~~~~~~~~~~~~~~ 82 (91)
T 1zpv_A 17 GIVAGVSGKIAELGLNIDDISQTVLDEYFTMMAVVSS--DEKQDFTYLRNEFEAFGQTLNVKINIQSA 82 (91)
T ss_dssp THHHHHHHHHHHTTCEEEEEEEEEETTEEEEEEEEEE--SSCCCHHHHHHHHHHHHHHHTEEEEEEEG
T ss_pred CHHHHHHHHHHHcCCCEEEEEeEEEcCEEEEEEEEEe--CCCCCHHHHHHHHHHHHHHcCCEEEEeeH
Confidence 4666777778999999999887765688777765421 11234556788889999999999988764
No 18
>1va6_A Glutamate--cysteine ligase; glutathione homeostasis, beta barrel, peptide synthesis, transition state analogue; HET: P2S ADP P6G; 2.10A {Escherichia coli} SCOP: d.128.1.4 PDB: 1v4g_A* 2d32_A* 2d33_A*
Probab=65.95 E-value=14 Score=37.19 Aligned_cols=37 Identities=11% Similarity=-0.162 Sum_probs=22.2
Q ss_pred ecCCCCCCcEEEEeCCC-chhhhhHHHHHHHHHHHHHH
Q 018391 189 INGEVMPGQWEFQVGPC-VGISSGDQLWMARYILERIT 225 (356)
Q Consensus 189 ~~~E~gpGQ~Ei~l~~~-~~l~aaD~~~~~k~~ik~vA 225 (356)
+.+|..-.|.|+...+. +.-++.+.+-..+..+.+.+
T Consensus 57 IttDfsEsqlE~iTpv~~s~~eal~~L~~l~~~v~~~l 94 (518)
T 1va6_A 57 ITTDFAEALLEFITPVDGDIEHMLTFMRDLHRYTARNM 94 (518)
T ss_dssp EEECSBTTEEEEECCCBSCHHHHHHHHHHHHHHHHTSS
T ss_pred cCCCcchhheeecCCCCCCHHHHHHHHHHHHHHHHHHc
Confidence 55666667777777665 33345556655555555555
No 19
>2iru_A Putative DNA ligase-like protein RV0938/MT0965; polymerase, primase, NHEJ, transferase; 1.65A {Mycobacterium tuberculosis} PDB: 2irx_A* 2iry_A* 2r9l_A* 3pky_A*
Probab=63.05 E-value=25 Score=32.76 Aligned_cols=125 Identities=10% Similarity=0.078 Sum_probs=77.9
Q ss_pred HHHcC-ceeeeecCCC-C-----------CCcEEEEeCCCchhhhhHHHHHHHHHHHHHHHHcCceEEecccccCCCCCC
Q 018391 179 CLYAG-INISGINGEV-M-----------PGQWEFQVGPCVGISSGDQLWMARYILERITEIAGVVLSFDPKPIKGDWNG 245 (356)
Q Consensus 179 l~~~G-i~ve~~~~E~-g-----------pGQ~Ei~l~~~~~l~aaD~~~~~k~~ik~vA~~~Gl~aTFmpKP~~~~~~G 245 (356)
+.++| |++-.+..-. + |.+.-|.|.|.+++.-+|-+ .+=..+|++-.+.|+.+ | ||- .-|
T Consensus 105 ~aq~g~lE~H~w~~r~~~~~~~~~~~~~~PD~lvfDLDP~~~~~f~~v~-~aA~~~r~~L~~lGL~~-f-~KT----SGg 177 (303)
T 2iru_A 105 IAQQAALEVHVPQWRFVAEPGSGELNPGPATRLVFDLDPGEGVMMAQLA-EVARAVRDLLADIGLVT-F-PVT----SGS 177 (303)
T ss_dssp HHHTTCCEEEECSEEEEECTTTCCEEEEEEEEEEEEEEECTTCCHHHHH-HHHHHHHHHHHTTTCCC-E-EEE----CSS
T ss_pred HHHhCcEeeeCCccccccccccccCCCCCCCEEEEECCCCCCCCHHHHH-HHHHHHHHHHHHcCCcc-c-eEc----cCC
Confidence 45566 6665554333 2 67888999999876654443 44455899999999984 3 773 347
Q ss_pred ceeeeeecccccCCCCchhHHHHHHHHHHHHHHHhhcc--ccccccccCCCCCCCCCCCceeeccCCCcceEeecc
Q 018391 246 AGAHANYSTKSMRNDGGIDVIKKAIEKLGKRHGEHIAA--YGEGNERRLTGRHETADINTFSWGVANRGASIRVGR 319 (356)
Q Consensus 246 sG~H~H~Sl~~~~~~~g~~~~~~fiaGl~L~h~~al~a--~~~nsYkRl~p~~~ap~~~~~~WG~~NR~a~vRvp~ 319 (356)
.|+|+.+-|... -+....+.|...| -+++..-.. ++.+.-|....|. .++-|-.|+|...+=-|-
T Consensus 178 kGlHV~vPl~~~---~~~~~vr~fa~~~-A~~l~~~~Pd~~t~~~~k~~R~gk-----IfvDy~qN~~g~T~vapY 244 (303)
T 2iru_A 178 KGLHLYTPLDEP---VSSRGATVLAKRV-AQRLEQAMPALVTSTMTKSLRAGK-----VFVDWSQNSGSKTTIAPY 244 (303)
T ss_dssp SCEEEEEEEEEE---ECHHHHHHHHHHH-HHHHHHHCTTTEESSCCGGGCTTS-----EEEECGGGSTTCCEECTT
T ss_pred CeEEEEEEcCCC---CCHHHHHHHHHHH-HHHHHHHCcceehhhhhHHhCCCC-----EEEECccCCCCCeeEecC
Confidence 999999998542 1234456666666 344433332 3334455544432 678888888877665553
No 20
>3nzt_A Glutamate--cysteine ligase; structural genomics, center for structural genomics of infec diseases, csgid, alpha and beta proteins; HET: AMP; 2.00A {Francisella tularensis subsp}
Probab=57.43 E-value=19 Score=36.16 Aligned_cols=19 Identities=21% Similarity=0.053 Sum_probs=15.6
Q ss_pred CCcceEeeeeeEEEeccCC
Q 018391 121 AEEPWYGIEQEYTLLQKDI 139 (356)
Q Consensus 121 G~~~~~g~E~EF~l~~~~~ 139 (356)
-..+.+|+|-|+..++++.
T Consensus 30 ~~~~~~GIE~E~lRVd~~G 48 (525)
T 3nzt_A 30 KINNLRGIERETLRVTDCG 48 (525)
T ss_dssp SCCCEEEEEEEEEEEETTS
T ss_pred CCCCCcceEeeeeEECCCC
Confidence 3468899999999998753
No 21
>1u8s_A Glycine cleavage system transcriptional repressor, putative; structural genomics, protein structure initiative (PSI), domain swapping; 2.45A {Vibrio cholerae} SCOP: d.58.18.5 d.58.18.5
Probab=49.89 E-value=22 Score=30.19 Aligned_cols=77 Identities=13% Similarity=0.162 Sum_probs=48.0
Q ss_pred HHHHHHHHHHHHHcCceeeeecCCC--------CCCcEEEEeCCCchhhhhHHHHHHHHHHHHHHHHcCceEEeccc-cc
Q 018391 169 RDIVNSHYKACLYAGINISGINGEV--------MPGQWEFQVGPCVGISSGDQLWMARYILERITEIAGVVLSFDPK-PI 239 (356)
Q Consensus 169 ~~~~~~l~~~l~~~Gi~ve~~~~E~--------gpGQ~Ei~l~~~~~l~aaD~~~~~k~~ik~vA~~~Gl~aTFmpK-P~ 239 (356)
-.++.++.+.|.+.|+.|+.+..-. +.+.|-+.+.-.-+ . ..+.-.+|..+.++|.+.|+...|.+- .+
T Consensus 104 ~Gil~~v~~~l~~~~~nI~~~~~~t~~~~~~~~~~~~F~~~~~~~~~-~-~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~ 181 (192)
T 1u8s_A 104 LGLTEKFTQFFAQRQIGMASLSAQTISKDKLHSEQNQFHIAISARVD-S-GCNLMQLQEEFDALCTALDVQGSLNFIKNS 181 (192)
T ss_dssp TTHHHHHHHHHHHTTCCEEEEEEEEEC--------CEEEEEEEEEEC-T-TSCHHHHHHHHHHHHHHHTCEEEEEEEEC-
T ss_pred ccHHHHHHHHHHHcCCcHHHhhhhcccCCccCCCCCEEEEEEEEeCC-C-CCCHHHHHHHHHHHHHHhCceEEEEEcccc
Confidence 3577788888999999998766542 45677666654322 1 113456788899999999999999984 33
Q ss_pred CCCCCCceeeee
Q 018391 240 KGDWNGAGAHAN 251 (356)
Q Consensus 240 ~~~~~GsG~H~H 251 (356)
. -.++|-|
T Consensus 182 ~----~~~~~~~ 189 (192)
T 1u8s_A 182 Q----EGGSHHH 189 (192)
T ss_dssp ------------
T ss_pred C----CCCcccc
Confidence 3 3455544
No 22
>3ose_A Serine/threonine-protein kinase MARK1; kinase associated-1(Ka1) domain, transferase, lipid binding membrane association; 1.70A {Homo sapiens} SCOP: d.129.6.1 PDB: 1ul7_A
Probab=48.37 E-value=47 Score=26.40 Aligned_cols=62 Identities=13% Similarity=0.074 Sum_probs=43.3
Q ss_pred HHHHHHHHHHHHHcCceeeeecC-------CC----CCCcEEEEeCCCc--hh------hhhHHHHHHHHHHHHHHHHcC
Q 018391 169 RDIVNSHYKACLYAGINISGING-------EV----MPGQWEFQVGPCV--GI------SSGDQLWMARYILERITEIAG 229 (356)
Q Consensus 169 ~~~~~~l~~~l~~~Gi~ve~~~~-------E~----gpGQ~Ei~l~~~~--~l------~aaD~~~~~k~~ik~vA~~~G 229 (356)
.+|+.+|.++|.++||+.+.-.. +. +.-|||+.+--.+ .+ +..=+.+.||.++..|..+..
T Consensus 40 ~eIm~eI~rvL~~~gi~~~~~g~y~l~C~~~~~~~~~~v~fElEVckl~~~~l~gV~~kRi~Gd~~~yk~lc~~il~~L~ 119 (120)
T 3ose_A 40 NDMMREIRKVLDANNCDYEQKERFLLFCVHGDARQDSLVQWEMEVCKLPRLSLNGVRFKRISGTSIAFKNIASKIANELK 119 (120)
T ss_dssp HHHHHHHHHHHHHTTCEEEEEETTEEEEEESCTTTTCCEEEEEEEEEEGGGTEEEEEEEEEESCHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHCCCEEEEcCCEEEEEEecCCCCCccEEEEEEEEEecCCCceeEEEEecCCCHHHHHHHHHHHHHHhc
Confidence 79999999999999998887432 11 2357888764432 22 233367789999999988754
Q ss_pred c
Q 018391 230 V 230 (356)
Q Consensus 230 l 230 (356)
|
T Consensus 120 L 120 (120)
T 3ose_A 120 L 120 (120)
T ss_dssp C
T ss_pred C
Confidence 3
No 23
>1v5s_A MAP/microtubule affinity-regulating kinase 3; Ka1 domain, ELKL motif, MARK3, phosphorylation, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.129.6.1
Probab=44.60 E-value=51 Score=26.58 Aligned_cols=62 Identities=15% Similarity=0.118 Sum_probs=44.6
Q ss_pred HHHHHHHHHHHHHcCceeeee--------cCCC---CCCcEEEEeCCCc--hh------hhhHHHHHHHHHHHHHHHHcC
Q 018391 169 RDIVNSHYKACLYAGINISGI--------NGEV---MPGQWEFQVGPCV--GI------SSGDQLWMARYILERITEIAG 229 (356)
Q Consensus 169 ~~~~~~l~~~l~~~Gi~ve~~--------~~E~---gpGQ~Ei~l~~~~--~l------~aaD~~~~~k~~ik~vA~~~G 229 (356)
.+++.+|+++|+++||+.++. |... ..=||||.+--.+ .+ +..-+.+.||.+..+|..+..
T Consensus 40 ~eIm~EI~rvL~~~~i~~k~~~~y~L~C~~~~~~~~~~vkfEiEVcKvp~l~l~GI~fKRisGd~w~YK~lc~~IL~eLk 119 (126)
T 1v5s_A 40 GDMMREIRKVLGANNCDYEQRERFLLFCVHGDGHAENLVQWEMEVCKLPRLSLNGVRFKRISGTSIAFKNIASKIANELK 119 (126)
T ss_dssp HHHHHHHHHHHHHTTEEEEEEETTEEEEEECSSSTTTCEEEEEECCCCTTTCSCCCEEEEEESCHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHcCCcEEEECCEEEEEEECCCCCCceEEEEEEEEEecCCCceeEEEeeccCchhHHHHHHHHHHHHHh
Confidence 789999999999999988861 2111 1238999876432 22 233366999999999999877
Q ss_pred c
Q 018391 230 V 230 (356)
Q Consensus 230 l 230 (356)
+
T Consensus 120 L 120 (126)
T 1v5s_A 120 L 120 (126)
T ss_dssp C
T ss_pred c
Confidence 5
No 24
>2nyi_A Unknown protein; protein structure initiative, PSI, center for eukaryotic structural genomics, CESG, structural genomics; 1.80A {Galdieria sulphuraria}
Probab=38.51 E-value=39 Score=28.84 Aligned_cols=67 Identities=16% Similarity=0.063 Sum_probs=50.4
Q ss_pred HHHHHHHHHHHHHcCceeeeecCCC------CCCcEEEEeCCCchhhhhHHHHHHHHHHHHHHHHcCceEEecccc
Q 018391 169 RDIVNSHYKACLYAGINISGINGEV------MPGQWEFQVGPCVGISSGDQLWMARYILERITEIAGVVLSFDPKP 238 (356)
Q Consensus 169 ~~~~~~l~~~l~~~Gi~ve~~~~E~------gpGQ~Ei~l~~~~~l~aaD~~~~~k~~ik~vA~~~Gl~aTFmpKP 238 (356)
-.++.+|.+.|.+.|+.|..++.-. +.+.|-+.+.-.-+ ... . -.+|..+..+|.+.|+...|.|-.
T Consensus 104 pGiva~Vt~~La~~g~nI~~~~~~t~~~~~~~~~~F~m~~~~~~~-~~~-~-~~l~~~l~~~a~~l~~di~~~~~~ 176 (195)
T 2nyi_A 104 EGIVEAVTAVLAKKGANIVELETETLPAPFAGFTLFRMGSRVAFP-FPL-Y-QEVVTALSRVEEEFGVDIDLEEVV 176 (195)
T ss_dssp TTHHHHHHHHHHHTTCEEEEEEEEEEECSSTTCEEEEEEEEEEEE-GGG-H-HHHHHHHHHHHHHHTCEEEEEECC
T ss_pred cCHHHHHHHHHHHcCCCEEEceeeecccccCCCCeEEEEEEEEcC-CCc-c-HHHHHHHHHHHHHcCeEEEEEECc
Confidence 4678888888999999998776543 44777776665433 223 3 668899999999999999998754
No 25
>3tc3_A UV damage endonuclease; TIM-barrel, hydrolase; 1.50A {Sulfolobus acidocaldarius}
Probab=34.38 E-value=74 Score=29.68 Aligned_cols=63 Identities=16% Similarity=0.099 Sum_probs=43.9
Q ss_pred HHHHHHHHHHcCceeeeecCCCCCC--cEEEEeCCCchhhhhHHHHHHHHHHHHHHHHcCceEEecccccC
Q 018391 172 VNSHYKACLYAGINISGINGEVMPG--QWEFQVGPCVGISSGDQLWMARYILERITEIAGVVLSFDPKPIK 240 (356)
Q Consensus 172 ~~~l~~~l~~~Gi~ve~~~~E~gpG--Q~Ei~l~~~~~l~aaD~~~~~k~~ik~vA~~~Gl~aTFmpKP~~ 240 (356)
+..++++.++.||.+--+.++.=|- ..|+.+.. .|.+...=.-|.++|+++|+..||-|=+|.
T Consensus 62 l~~il~~n~~~~I~~yRiSS~l~P~~thp~~~~~~------~~~~~~~l~~iG~~a~~~~iRLS~HPgqF~ 126 (310)
T 3tc3_A 62 LKNILEWNLKHEILFFRISSNTIPLASHPKFHVNW------KDKLSHILGDIGDFIKENSIRISMHPGQYV 126 (310)
T ss_dssp HHHHHHHHHHTTCCEEECCTTSSTTTTSTTCCCCH------HHHTHHHHHHHHHHHHHTTCEEEECCCTTC
T ss_pred HHHHHHHHHHcCCEEEEeCcccCCCccccccccch------HHHHHHHHHHHHHHHHHcCcEEEecCCCCc
Confidence 4456788899999999988887762 22222211 233322234578889999999999999987
No 26
>1u8s_A Glycine cleavage system transcriptional repressor, putative; structural genomics, protein structure initiative (PSI), domain swapping; 2.45A {Vibrio cholerae} SCOP: d.58.18.5 d.58.18.5
Probab=24.14 E-value=3.1e+02 Score=22.71 Aligned_cols=66 Identities=11% Similarity=0.051 Sum_probs=47.8
Q ss_pred HHHHHHHHHHHHcCceeeeecCCCCCCcEEEEeCCCchhhhhHHHHHHHHHHHHHHHHcCceEEecccc
Q 018391 170 DIVNSHYKACLYAGINISGINGEVMPGQWEFQVGPCVGISSGDQLWMARYILERITEIAGVVLSFDPKP 238 (356)
Q Consensus 170 ~~~~~l~~~l~~~Gi~ve~~~~E~gpGQ~Ei~l~~~~~l~aaD~~~~~k~~ik~vA~~~Gl~aTFmpKP 238 (356)
.++..+...|.+.|++|.....-.-.|+|=+.+.-..+. +..-.++..+.+++.+.|+...+-+.+
T Consensus 18 Giva~vt~~La~~g~NI~d~~~~~~~~~f~~~~~v~~~~---~~~~~l~~~L~~~~~~~~~~~~~~~~~ 83 (192)
T 1u8s_A 18 GICNEVVRLVTQAGCNIIDSRIAMFGKEFTLLMLISGSP---SNITRVETTLPLLGQQHDLITMMKRTS 83 (192)
T ss_dssp THHHHHHHHHHHTTCEEEEEEEEEETTEEEEEEEEEECH---HHHHHHHHHHHHHHHHHTCEEEEEEEC
T ss_pred cHHHHHHHHHHHCCCCEEeeeeeecCCceEEEEEEecCC---CCHHHHHHHHHHHHHhcCCEEEEEeCC
Confidence 467777788899999998876655567777655443322 355667888889999999998876543
No 27
>1q02_A Sequestosome 1; helical bundle, protein binding; NMR {Homo sapiens} SCOP: a.5.2.1 PDB: 2jy7_A 2jy8_A 2k0b_X 2knv_A 2rru_A 3b0f_A
Probab=21.29 E-value=43 Score=22.77 Aligned_cols=23 Identities=13% Similarity=0.161 Sum_probs=18.7
Q ss_pred CccCCCChHHHHHHHHcCcccCCCc
Q 018391 99 GEPIPTNKRFNAAKVFGHPDVVAEE 123 (356)
Q Consensus 99 G~P~~~~PR~~Lkr~~~~l~~~G~~ 123 (356)
|.|...||| +..++..+..|||+
T Consensus 1 ~~p~~~D~r--l~~al~qMl~MGF~ 23 (52)
T 1q02_A 1 GSPPEADPR--LIESLSQMLSMGFS 23 (52)
T ss_dssp CCCTTSCHH--HHHHHHHHHTTTCC
T ss_pred CCCCCcChH--HHHHHHHHHHcCCC
Confidence 568888998 67788888888887
Done!