RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= 018391
(356 letters)
>2d3a_A Glutamine synthetase; ligase; HET: P3S ADP; 2.63A {Zea mays} PDB:
2d3b_A* 2d3c_A*
Length = 356
Score = 572 bits (1477), Expect = 0.0
Identities = 303/356 (85%), Positives = 334/356 (93%)
Query: 1 MSLLNDLLNLNLSESTEKVIAEYVWIGGSGMDLRSKARTLPAPTTDPTKLPKWNYDGSST 60
M+ L DL+NLNLS++TEK+IAEY+WIGGSGMDLRSKARTLP P TDP+KLPKWNYDGSST
Sbjct: 1 MACLTDLVNLNLSDTTEKIIAEYIWIGGSGMDLRSKARTLPGPVTDPSKLPKWNYDGSST 60
Query: 61 NQAPGDDSEVILYPQTVFKDPFRRGNNILVMCDAYTPAGEPIPTNKRFNAAKVFGHPDVV 120
QAPG+DSEVILYPQ +FKDPFRRGNNILVMCD YTPAGEPIPTNKR++AAK+F P+V
Sbjct: 61 GQAPGEDSEVILYPQAIFKDPFRRGNNILVMCDCYTPAGEPIPTNKRYSAAKIFSSPEVA 120
Query: 121 AEEPWYGIEQEYTLLQKDINWPLGWPVGGYPGPQGPYYCGVGADKALGRDIVNSHYKACL 180
AEEPWYGIEQEYTLLQKD NWPLGWP+GG+PGPQGPYYCG+GA+K+ GRDIV++HYKACL
Sbjct: 121 AEEPWYGIEQEYTLLQKDTNWPLGWPIGGFPGPQGPYYCGIGAEKSFGRDIVDAHYKACL 180
Query: 181 YAGINISGINGEVMPGQWEFQVGPCVGISSGDQLWMARYILERITEIAGVVLSFDPKPIK 240
YAGINISGINGEVMPGQWEFQVGP VGISSGDQ+W+ARYILERITEIAGVV++FDPKPI
Sbjct: 181 YAGINISGINGEVMPGQWEFQVGPSVGISSGDQVWVARYILERITEIAGVVVTFDPKPIP 240
Query: 241 GDWNGAGAHANYSTKSMRNDGGIDVIKKAIEKLGKRHGEHIAAYGEGNERRLTGRHETAD 300
GDWNGAGAH NYST+SMR +GG +VIK AIEKL RH EHIAAYGEGNERRLTGRHETAD
Sbjct: 241 GDWNGAGAHTNYSTESMRKEGGYEVIKAAIEKLKLRHKEHIAAYGEGNERRLTGRHETAD 300
Query: 301 INTFSWGVANRGASIRVGRDTEKEGKGYFEDRRPASNMDPYVVTSMIAETTILWKP 356
INTFSWGVANRGAS+RVGR+TE+ GKGYFEDRRPASNMDPYVVTSMIAETTI+WKP
Sbjct: 301 INTFSWGVANRGASVRVGRETEQNGKGYFEDRRPASNMDPYVVTSMIAETTIVWKP 356
>2ojw_A Glutamine synthetase; amino-acid biosynthesis, ligase, structural
GENO structural genomics consortium, SGC; HET: ADP;
2.05A {Homo sapiens} PDB: 2qc8_A* 2uu7_A
Length = 384
Score = 532 bits (1372), Expect = 0.0
Identities = 189/343 (55%), Positives = 240/343 (69%), Gaps = 7/343 (2%)
Query: 17 EKVIAEYVWIGGSGMDLRSKARTLPAPTTDPTKLPKWNYDGSSTNQAPGDDSEVILYPQT 76
EKV A Y+WI G+G LR K RTL + +LP+WN+DGSST Q+ G +S++ L P
Sbjct: 43 EKVQAMYIWIDGTGEGLRCKTRTLDSEPKCVEELPEWNFDGSSTLQSEGSNSDMYLVPAA 102
Query: 77 VFKDPFRRGNNILVMCDAYTPAGEPIPTNKRFNAAKVFGHPDVVAEEPWYGIEQEYTLLQ 136
+F+DPFR+ N LV+C+ + P TN R ++ + PW+G+EQEYTL+
Sbjct: 103 MFRDPFRKDPNKLVLCEVFKYNRRPAETNLRHTCKRIMDMVS--NQHPWFGMEQEYTLMG 160
Query: 137 KDINWPLGWPVGGYPGPQGPYYCGVGADKALGRDIVNSHYKACLYAGINISGINGEVMPG 196
D P GWP G+PGPQGPYYCGVGAD+A GRDIV +HY+ACLYAG+ I+G N EVMP
Sbjct: 161 TD-GHPFGWPSNGFPGPQGPYYCGVGADRAYGRDIVEAHYRACLYAGVKIAGTNAEVMPA 219
Query: 197 QWEFQVGPCVGISSGDQLWMARYILERITEIAGVVLSFDPKPIKGDWNGAGAHANYSTKS 256
QWEFQ+GPC GIS GD LW+AR+IL R+ E GV+ +FDPKPI G+WNGAG H N+STK+
Sbjct: 220 QWEFQIGPCEGISMGDHLWVARFILHRVCEDFGVIATFDPKPIPGNWNGAGCHTNFSTKA 279
Query: 257 MRNDGGIDVIKKAIEKLGKRHGEHIAAY----GEGNERRLTGRHETADINTFSWGVANRG 312
MR + G+ I++AIEKL KRH HI AY G N RRLTG HET++IN FS GVANR
Sbjct: 280 MREENGLKYIEEAIEKLSKRHQYHIRAYDPKGGLDNARRLTGFHETSNINDFSAGVANRS 339
Query: 313 ASIRVGRDTEKEGKGYFEDRRPASNMDPYVVTSMIAETTILWK 355
ASIR+ R +E KGYFEDRRP++N DP+ VT + T +L +
Sbjct: 340 ASIRIPRTVGQEKKGYFEDRRPSANCDPFSVTEALIRTCLLNE 382
>3fky_A Glutamine synthetase; beta-grAsp, catalytic domain, acetylation,
cytoplasm, ligase, UBL conjugation; HET: FLC; 2.95A
{Saccharomyces cerevisiae}
Length = 370
Score = 518 bits (1337), Expect = 0.0
Identities = 205/336 (61%), Positives = 241/336 (71%), Gaps = 4/336 (1%)
Query: 17 EKVIAEYVWIGGSGMDLRSKARTLPAPTTDPTKLPKWNYDGSSTNQAPGDDSEVILYPQT 76
++IAEYVWI G+G +LRSK RTL T +LP+WN+DGSSTNQAPG DS++ L P
Sbjct: 22 GRIIAEYVWIDGTG-NLRSKGRTLKKRITSIDQLPEWNFDGSSTNQAPGHDSDIYLKPVA 80
Query: 77 VFKDPFRRGNNILVMCDAYTPAGEPIPTNKRFNAAKVFGHPDVVAEEPWYGIEQEYTLLQ 136
+ DPFRRG+NI+V+ Y G P N R AAK+F EE W+G+EQEYTL
Sbjct: 81 YYPDPFRRGDNIVVLAACYNNDGTPNKFNHRHEAAKLF--AAHKDEEIWFGLEQEYTLFD 138
Query: 137 KDINWPLGWPVGGYPGPQGPYYCGVGADKALGRDIVNSHYKACLYAGINISGINGEVMPG 196
+ GWP GGYP PQGPYYCGVGA K RD++ +HY+ACLYAG+ ISGIN EVMP
Sbjct: 139 MY-DDVYGWPKGGYPAPQGPYYCGVGAGKVYARDMIEAHYRACLYAGLEISGINAEVMPS 197
Query: 197 QWEFQVGPCVGISSGDQLWMARYILERITEIAGVVLSFDPKPIKGDWNGAGAHANYSTKS 256
QWEFQVGPC GI GDQLWMARY L R+ E G+ +SF PKP+KGDWNGAG HAN STK
Sbjct: 198 QWEFQVGPCTGIDMGDQLWMARYFLHRVAEEFGIKISFHPKPLKGDWNGAGCHANVSTKE 257
Query: 257 MRNDGGIDVIKKAIEKLGKRHGEHIAAYGEGNERRLTGRHETADINTFSWGVANRGASIR 316
MR GG I++AIEKL KRH EHI YG N+ RLTGRHETA + FS GVANRG+SIR
Sbjct: 258 MRQPGGTKYIEQAIEKLSKRHAEHIKLYGSDNDMRLTGRHETASMTAFSSGVANRGSSIR 317
Query: 317 VGRDTEKEGKGYFEDRRPASNMDPYVVTSMIAETTI 352
+ R KEG GYFEDRRPASN+DPY+VT ++ ET
Sbjct: 318 IPRSVAKEGYGYFEDRRPASNIDPYLVTGIMCETVC 353
>3o6x_A Glutamine synthetase; type III, beta barrel,dodecamer, ligas; HET:
P3S ADP; 3.50A {Bacteroides fragilis}
Length = 729
Score = 61.5 bits (149), Expect = 2e-10
Identities = 42/254 (16%), Positives = 79/254 (31%), Gaps = 53/254 (20%)
Query: 54 NYDGSSTNQAPG-----DDSEVILYPQTVFKDPF-------RRGNNILVMCDAYTPAGEP 101
DG + G + + +P ++ F G++ + D
Sbjct: 109 GEDGEVIERFSGKLLIQQEPDASSFPNGGIRNTFEARGYTAWDGSSPAFVVDTTLCIPTI 168
Query: 102 IPT--------------------NKRFNAAKVFGHPDVVAEEPWYGIEQEYTLLQKDIN- 140
+ ++F ++ G EQEY L+ +
Sbjct: 169 FISYTGEALDYKTPLLKALAAVDKAATEVCQLFDK-NITRVFTNLGWEQEYFLVDTSLYN 227
Query: 141 -----WPLGWPVGGYPGPQ----GPYYCGVGADKALG--RDIVNSHYKACLYAGINISGI 189
G + G+ + +Y G + +++ +K GI +
Sbjct: 228 ARPDLRLTGRTLMGHSSAKDQQLEDHYFGSIPPRVTAFMKELEIECHKL----GIPVKTR 283
Query: 190 NGEVMPGQWEFQVGPCVGISSGDQLWMARYILERITEIAGVVLSFDPKPIKGDWNGAGAH 249
+ EV P Q+E + D + +++RI + F KP G NG+G H
Sbjct: 284 HNEVAPNQFELAPIFENCNLANDHNQLVMDLMKRIARKHHFAVLFHEKPYNGV-NGSGKH 342
Query: 250 ANYSTKSMRNDGGI 263
N+ S+ D GI
Sbjct: 343 NNW---SLCTDTGI 353
>2j9i_A Glutamate-ammonia ligase domain-containing protein 1; 17.00A {Mus
musculus}
Length = 421
Score = 54.5 bits (132), Expect = 2e-08
Identities = 46/315 (14%), Positives = 79/315 (25%), Gaps = 63/315 (20%)
Query: 56 DGSSTNQ-APGDDSEVILYP--QTVFKDPFRRGNNILVMCDAYTP-AGEPIPTNKRFNAA 111
DG A S+++L P T V+CD A P R+ A
Sbjct: 50 DGEVNAGAAGAAASDIVLMPELSTAAVAAAAAAATAAVICDGGAAAAASP-----RYIAR 104
Query: 112 KVF------GHPDVVAEEPWYGIEQEYTLLQKDINWPLGWPVGGYPGPQGPYYCGVGADK 165
G + ++ + + +
Sbjct: 105 AALAQLQAAGAAAGLLSAF----IADFCIFGVPE----------VINSKTISFPASTTAA 150
Query: 166 A--LGRDIVNSHYKACLYA-GINISGINGEVMPGQWEFQVGPC-VGISSGDQLWMARYIL 221
A ++ A G G G E P G ++ D + R L
Sbjct: 151 AADQPQEAAA------GGAAGAAAGAAGGAAAAGAAEICFLPEAAGAAAADNAFTLRTGL 204
Query: 222 ERITEIAGVVLSFDPKPIKGDWNGAGAHANYS-TKSMRN----DGGIDVIKKAIEKLG-- 274
+ + + S GAG+H+ + + N G + L
Sbjct: 205 QEVARRYNAIASAAAAAAAAA-AGAGSHSIWDVGAAGTNAFAGASGARATLTGAKWLAGL 263
Query: 275 KRHGEHIAA--------YGEGNERRLTGRHETADINTFSWGVANRGASIRVGRDTEKEGK 326
AA A T +WG A ++ + +G
Sbjct: 264 LAAAAAAAAAAAAAAAAA-----AAAAAGAA-AAAAT-AWGAAAAACALNIAAAAAAKGA 316
Query: 327 GYFEDRRPASNMDPY 341
E++ A+ +PY
Sbjct: 317 -QIENKAGAAAANPY 330
>3qaj_A Glutamine synthetase; AMP-PCP, ACP, ligase; HET: GLU ADP RGP CIT
AMP; 3.05A {Bacillus subtilis}
Length = 444
Score = 53.7 bits (130), Expect = 4e-08
Identities = 60/216 (27%), Positives = 88/216 (40%), Gaps = 37/216 (17%)
Query: 56 DGSSTNQAPG----DDSEVILYP--QTVFKDPFR--RGNNILVMCDAYTPAGEPIPTNKR 107
DGSS G ++S++ LYP T P+ +G +CD Y P G P + R
Sbjct: 53 DGSSI---EGFVRIEESDMYLYPDLNTFVIFPWTAEKGKVARFICDIYNPDGTPFEGDPR 109
Query: 108 FNAAKVFGHPDVVAEEPWY-----GIEQEYTLLQKDINWPLGWPV---GGYPGPQGPYYC 159
N ++ E+ + G E E+ L + D + GGY P
Sbjct: 110 NNLKRILKE----MEDLGFSDFNLGPEPEFFLFKLDEKGEPTLELNDKGGY-FDLAPT-- 162
Query: 160 GVGADKALGRDIVNSHYKACLYAGINISGINGEVMPGQWE--FQVGPCVGISSGDQLWMA 217
+G + RDIV G I + EV PGQ E F+ V S D +
Sbjct: 163 DLGEN--CRRDIVL----ELEEMGFEIEASHHEVAPGQHEIDFKYAGAV--RSCDDIQTF 214
Query: 218 RYILERITEIAGVVLSFDPKPIKGDWNGAGAHANYS 253
+ +++ I G+ +F PKP+ G NG+G H N S
Sbjct: 215 KLVVKTIARKHGLHATFMPKPLFGV-NGSGMHCNLS 249
>3ng0_A Glutamine synthetase; GSI, nitrogen metabolism, synec ligase; HET:
ANP; 2.80A {Synechocystis SP}
Length = 473
Score = 44.9 bits (107), Expect = 3e-05
Identities = 52/233 (22%), Positives = 86/233 (36%), Gaps = 44/233 (18%)
Query: 56 DGSSTNQAPG----DDSEVILYP--QTVFKDPFRRGNNILVMCDAYTPA-GEPIPTNKRF 108
DGSS G ++S++ + P T DPF + + ++C P GE + R
Sbjct: 53 DGSSI---RGWKAINESDMCMVPDPNTATIDPFCKEPTLSMICSIKEPRTGEWYNRDPRT 109
Query: 109 NAAKV--------------FG-----------HPDVVAEEPWYGIEQEYTLLQKDINWPL 143
AAK FG +Y +
Sbjct: 110 IAAKAAEYLRGTGIADTVYFGPEAEFFLFDDIRFGQTENSSYYFADSVEGRWNTGREEEG 169
Query: 144 GWPVGGYPGPQGPYYCGVGADKA--LGRDIVNSHYKACLYAGINISGINGEVMP-GQWEF 200
G G PG + Y+ D A + +++ G+ I + EV GQ E
Sbjct: 170 GNL-GYKPGYKQGYFPVAPTDTAQDIRTEMLL----TMAAFGVPIEKHHHEVASGGQNEL 224
Query: 201 QVGPCVGISSGDQLWMARYILERITEIAGVVLSFDPKPIKGDWNGAGAHANYS 253
+ ++S D L + +Y+++ + + G ++F PKPI D NG+G H + S
Sbjct: 225 GIKFDKLVNSADNLMIYKYVIKNVAKKYGKTVTFMPKPIFND-NGSGMHVHQS 276
>2bvc_A Glutamine synthetase 1; ligase, transition state mimic; HET: P3S
ADP; 2.1A {Mycobacterium tuberculosis} SCOP: d.15.9.1
d.128.1.1 PDB: 2wgs_A* 2whi_A* 3zxr_A* 3zxv_A* 1hto_A*
1htq_A*
Length = 486
Score = 44.1 bits (105), Expect = 5e-05
Identities = 72/350 (20%), Positives = 115/350 (32%), Gaps = 90/350 (25%)
Query: 56 DGSSTNQAPG----DDSEVILYP--QTVFKDPFRRGNNILVMCDAYTPA-GEPIPTNKRF 108
DGSS G +S+++L P +T DPFR + + + P EP + R
Sbjct: 62 DGSSI---RGFQSIHESDMLLLPDPETARIDPFRAAKTLNINFFVHDPFTLEPYSRDPRN 118
Query: 109 NAAKV--------------FG-----------HPDVVAEEPWYGIEQEYTLLQKDINWPL 143
A K FG D A +Y ++
Sbjct: 119 IARKAENYLISTGIADTAYFGAEAEFYIFDSVSFDSRANGSFYEVDAISGWWNTGAATEA 178
Query: 144 GWP--VGGYPGPQGPYYCGVGADKA--LGRDIVNSHYKACLYAGINISGINGEVMP-GQW 198
G +G Y+ D+ L ++ + +G + + EV GQ
Sbjct: 179 DGSPNRGYKVRHKGGYFPVAPNDQYVDLRDKML----TNLINSGFILEKGHHEVGSGGQA 234
Query: 199 EFQVGPCVGISSGDQLWMARYILERITEIAGVVLSFDPKPIKGDWNGAGAHANYS-TKSM 257
E + + D + + +YI++ G ++F PKP+ GD NG+G H + S K
Sbjct: 235 EINYQFNSLLHAADDMQLYKYIIKNTAWQNGKTVTFMPKPLFGD-NGSGMHCHQSLWKDG 293
Query: 258 RND------------------GGIDVIKKAIEKLGKRHGEHIAA--------YGEGNERR 291
GG+ + H + A Y +R
Sbjct: 294 APLMYDETGYAGLSDTARHYIGGL--LH---------HAPSLLAFTNPTVNSY-----KR 337
Query: 292 LTGRHETADINTFSWGVANRGASIRVGRDTEKEGKGYFEDRRPASNMDPY 341
L +E A IN + NR A +R+ E R P S+ +PY
Sbjct: 338 LVPGYE-APIN-LVYSQRNRSACVRIPITGSNPKAKRLEFRSPDSSGNPY 385
>1f52_A Glutamine synthetase; ADP, MPD, ligase; HET: ADP; 2.49A {Salmonella
typhimurium} SCOP: d.15.9.1 d.128.1.1 PDB: 1f1h_A*
1fpy_A* 1lgr_A* 2lgs_A* 2gls_A
Length = 468
Score = 43.7 bits (104), Expect = 5e-05
Identities = 48/233 (20%), Positives = 81/233 (34%), Gaps = 44/233 (18%)
Query: 56 DGSSTNQAPG----DDSEVILYP--QTVFKDPFRRGNNILVMCDAYTPA-GEPIPTNKRF 108
DGSS G ++S+++L P T DPF + +++ CD P + + R
Sbjct: 50 DGSSI---GGWKGINESDMVLMPDASTAVIDPFFADSTLIIRCDILEPGTLQGYDRDPRS 106
Query: 109 NAAKV--------------FG-----------HPDVVAEEPWYGIEQEYTLLQKDINWPL 143
A + FG I+ +
Sbjct: 107 IAKRAEDYLRATGIADTVLFGPEPEFFLFDDIRFGASISGSHVAIDDIEGAWNSSTKYEG 166
Query: 144 GWPVGGYPGPQGPYYCGVGADKA--LGRDIVNSHYKACLYAGINISGINGEVMP-GQWEF 200
G G PG +G Y+ D A + ++ G+ + + EV GQ E
Sbjct: 167 GNK-GHRPGVKGGYFPVPPVDSAQDIRSEMCL----VMEQMGLVVEAHHHEVATAGQNEV 221
Query: 201 QVGPCVGISSGDQLWMARYILERITEIAGVVLSFDPKPIKGDWNGAGAHANYS 253
D++ + +Y++ + G +F PKP+ GD NG+G H + S
Sbjct: 222 ATRFNTMTKKADEIQIYKYVVHNVAHRFGKTATFMPKPMFGD-NGSGMHCHMS 273
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 36.8 bits (84), Expect = 0.012
Identities = 59/383 (15%), Positives = 110/383 (28%), Gaps = 143/383 (37%)
Query: 2 SLLNDLLNLNLSESTEKVIAEYVWIGGSGMDLRSKARTLP--APTTDPTKL--------- 50
SL + + L E + ++ +Y+ + + LP TT+P +L
Sbjct: 290 SLDHHSMTLTPDEV-KSLLLKYLDC---------RPQDLPREVLTTNPRRLSIIAESIRD 339
Query: 51 --PKWNY-------------DGSSTNQAPGDDSEVILYPQ-TVFKDPFRRGNNILVMCDA 94
W+ + S P + + ++ + +VF
Sbjct: 340 GLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRK--MFDRLSVF---------------- 381
Query: 95 YTPAGEPIPTNKRFNAAKVFGHPDVVAEEPWYGIEQE-----------YTLLQKDINWPL 143
P IPT + W+ + + Y+L++K
Sbjct: 382 --PPSAHIPTI--------------LLSLIWFDVIKSDVMVVVNKLHKYSLVEKQ----- 420
Query: 144 GWPVGGY--PGPQGPYYCGVGADKALGRDIVNSHYKACLYAGINISGINGEVMPGQWEFQ 201
P + + AL R IV+ HY + + + + +
Sbjct: 421 -PKESTISIPSIYLELKVKLENEYALHRSIVD-HYN--IPKTFDSDDLIPPYLDQYFYSH 476
Query: 202 VGPCVGISSGDQLWMARYILERITEIAGVVLSF---DPKPIKGD---WNGAGAHAN---- 251
+G L + ER+T V L F + K I+ D WN +G+ N
Sbjct: 477 IG--------HHLKNIEHP-ERMTLFRMVFLDFRFLEQK-IRHDSTAWNASGSILNTLQQ 526
Query: 252 ---YSTKSMRNDGGIDVIKKAIEKLGKRHGEHIAAYGEGNERRLTGRHETADINTFSWGV 308
Y ND + + AI + E++ + D+
Sbjct: 527 LKFYKPYICDNDPKYERLVNAILDFLPKIEENLI------------CSKYTDL------- 567
Query: 309 ANRGASIRVGRDTEKEGKGYFED 331
+R+ E E FE+
Sbjct: 568 ------LRIALMAEDE--AIFEE 582
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 35.4 bits (81), Expect = 0.032
Identities = 54/293 (18%), Positives = 97/293 (33%), Gaps = 79/293 (26%)
Query: 10 LNLSE-STEKVI--AEYVWIGGSGMDLRSK-ARTLPAPTTDPTKLPKWNYDGSST----- 60
L LS S E V+ + S L+ + + LP PT + + ++
Sbjct: 9 LTLSHGSLEHVLLVPTASFFIAS--QLQEQFNKILPEPTEGFAA----DDEPTTPAELVG 62
Query: 61 -----------NQAPGDDSEVILYPQTVFKDPFRRGNNI--LVMCDAYTPAGEPIPTNKR 107
G +V+ T F++ + GN+I L A K
Sbjct: 63 KFLGYVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDIHALA---AKLLQENDTTLVKT 119
Query: 108 FNAAKVFGHPDVVAEEPWYGIEQEYTLLQ--KDINWPLGWPV-GGYPGPQGP-------- 156
K + ++A+ P + + L + + N L + GG QG
Sbjct: 120 KELIKNYITARIMAKRP-FDKKSNSALFRAVGEGNAQL-VAIFGG----QGNTDDYFEEL 173
Query: 157 ------YYCGVG-----ADKALGRDIVNSHYKACLY-AGINISG--INGEVMPGQWEFQV 202
Y+ VG + + L I + ++ G+NI N P + ++ +
Sbjct: 174 RDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLENPSNTPDK-DYLL 232
Query: 203 -----GPCVGISSGDQLWMARYILERITEIAGVVLSFDPKPIKGDWNGAGAHA 250
P +G+ QL A Y+ + +L F P ++ GA H+
Sbjct: 233 SIPISCPLIGVI---QL--AHYV------VTAKLLGFTPGELRSYLKGATGHS 274
Score = 34.3 bits (78), Expect = 0.067
Identities = 45/320 (14%), Positives = 80/320 (25%), Gaps = 149/320 (46%)
Query: 28 GS-----GMDLRSK---ARTLPAPTTDPTKLPKWNYDGSSTNQAPGDD-SEVIL-YPQTV 77
GS GMDL A+ + WN + G ++++ P +
Sbjct: 1625 GSQEQGMGMDLYKTSKAAQDV------------WNRADNHFKDTYGFSILDIVINNPVNL 1672
Query: 78 ---FKDPFRRGNNI----LVMCDAYTPAG----EPIPTNKRFNAAKV-FGHPDVVAEEPW 125
F +G I M G E I ++ F +
Sbjct: 1673 TIHFGGE--KGKRIRENYSAMIFETIVDGKLKTEKIFKEINEHSTSYTFRSEKGL----- 1725
Query: 126 YGIEQ-EYT-------------LLQKDINWPLGWPVGGYPGPQGPYYCGVGADKALGRDI 171
+ ++T L+ G P + G
Sbjct: 1726 --LSATQFTQPALTLMEKAAFEDLKSK---------GLIPADA--TFAG----------- 1761
Query: 172 VNSH----YKA-CLYAG-INIS---------GI-------NGE----------VMPGQWE 199
H Y A A ++I G+ E + PG+
Sbjct: 1762 ---HSLGEYAALASLADVMSIESLVEVVFYRGMTMQVAVPRDELGRSNYGMIAINPGR-- 1816
Query: 200 FQVGPCVGISSGDQLWMARYILERITEIAGVVLSFDPKPIKGDWNGAGAHANYSTKSMRN 259
V S + +Y++ER+ + G ++ I NY N
Sbjct: 1817 ------VAASFSQE--ALQYVVERVGKRTGWLVE-----I----------VNY------N 1847
Query: 260 -DGGIDVI---KKAIEKLGK 275
+ V +A++ +
Sbjct: 1848 VENQQYVAAGDLRALDTVTN 1867
Score = 32.7 bits (74), Expect = 0.20
Identities = 14/77 (18%), Positives = 25/77 (32%), Gaps = 22/77 (28%)
Query: 227 IAGVVLSFD-----------------PKPIKGDWNGAGAHANYSTKSMRNDGGIDVIKKA 269
+A V +S + P+ G N N + + ++
Sbjct: 1773 LADV-MSIESLVEVVFYRGMTMQVAVPRDELGRSNYGMIAINPG--RVAASFSQEALQYV 1829
Query: 270 IEKLGKRHGEH--IAAY 284
+E++GKR G I Y
Sbjct: 1830 VERVGKRTGWLVEIVNY 1846
>2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-PR; fatty
acid synthase, acyl-carrier-protein, beta-ketoacyl RED
beta-ketoacyl synthase, dehydratase; 4.00A {Saccharomyces
cerevisiae}
Length = 1688
Score = 32.5 bits (74), Expect = 0.22
Identities = 15/84 (17%), Positives = 26/84 (30%), Gaps = 13/84 (15%)
Query: 271 EKLGKRHGEH--IAAYGEGNERRLTGRHETA----DINTFSWGVANRGASIRVGRDTEKE 324
E+ +HG+ I E E + F VA I G + +
Sbjct: 943 EQFKHQHGDKVDIFEIPETGEYSVKLLKGATLYIPKALRFDRLVA---GQIPTGWNAKT- 998
Query: 325 GKGYFEDRRPASNMDPYVVTSMIA 348
Y S +DP + +++
Sbjct: 999 ---YGISDDIISQVDPITLFVLVS 1019
>1wr8_A Phosphoglycolate phosphatase; alpha / beta core domain, HAD
superfamily, structural genomi structural
genomics/proteomics initiative, RSGI; 1.60A {Pyrococcus
horikoshii} SCOP: c.108.1.10
Length = 231
Score = 30.9 bits (71), Expect = 0.42
Identities = 10/27 (37%), Positives = 15/27 (55%)
Query: 248 AHANYSTKSMRNDGGIDVIKKAIEKLG 274
+A+Y TK +GG + I +EK G
Sbjct: 203 ENADYVTKKEYGEGGAEAIYHILEKFG 229
>3fm8_A Kinesin-like protein KIF13B; kinesin, GAP, GTPase activation,
structural genomics consort ATP-binding, cytoskeleton,
microtubule, motor protein, NUCL binding; 2.30A {Homo
sapiens} PDB: 3mdb_A*
Length = 124
Score = 29.1 bits (65), Expect = 1.0
Identities = 13/67 (19%), Positives = 20/67 (29%), Gaps = 7/67 (10%)
Query: 288 NERRLTGRHETADINTFSWGVANRGASIRVGRDTEKEGKGYFEDRRPASNMDPYVVTSMI 347
E L G + DI G+ I + +G P N +V S +
Sbjct: 47 KEHTLIGSANSQDIQLCGMGILPEHCII------DITSEGQVM-LTPQKNTRTFVNGSSV 99
Query: 348 AETTILW 354
+ L
Sbjct: 100 SSPIQLH 106
>3hn2_A 2-dehydropantoate 2-reductase; PSI-2, NYSGXRC, structural GE
protein structure initiative; 2.50A {Geobacter
metallireducens}
Length = 312
Score = 27.6 bits (62), Expect = 5.8
Identities = 15/72 (20%), Positives = 21/72 (29%), Gaps = 10/72 (13%)
Query: 216 MARYILERITEIA---GVVLSFDPKPIKGDWNGAGAHANYSTKSMRND--GG----IDVI 266
+ R I+ + A G+ + A Y SM D G I I
Sbjct: 216 LVRGIMLEVIAGANAQGLATFIADGYVDDMLEFTDAMGEYKP-SMEIDREEGRPLEIAAI 274
Query: 267 KKAIEKLGKRHG 278
+ G R G
Sbjct: 275 FRTPLAYGAREG 286
>2pq0_A Hypothetical conserved protein GK1056; hyopthetical protein,
structural genomics, unknown function; 2.60A
{Geobacillus kaustophilus} PDB: 2qyh_A
Length = 258
Score = 27.1 bits (61), Expect = 7.7
Identities = 6/27 (22%), Positives = 13/27 (48%), Gaps = 4/27 (14%)
Query: 248 AHANYSTKSMRNDGGIDVIKKAIEKLG 274
A++ TK + +G I +++L
Sbjct: 233 RVADFVTKPVDKEG----IWYGLKQLQ 255
>2iia_A Sensory rhodopsin transducer protein; signaling protein; 1.80A
{Anabaena SP} PDB: 2ii9_A 2ii7_A 2ii8_A
Length = 131
Score = 26.1 bits (57), Expect = 9.7
Identities = 11/73 (15%), Positives = 21/73 (28%), Gaps = 17/73 (23%)
Query: 271 EKLGKRH----GEHIAAYGEGNERRLTGRHETADINTFSWGVANRGASIRVGRDTEKEGK 326
+G+ +I YG G E + +N + A + +
Sbjct: 9 LSIGRTCWAIAEGYIPPYGNGPEPQFISHETVCILNA-----GDEDAHVEI--------T 55
Query: 327 GYFEDRRPASNMD 339
Y+ D+ P
Sbjct: 56 IYYSDKEPVGPYR 68
>1w6t_A Enolase; bacterial infection, surface protein, moonlighting
protein, glycolysis, phosphopyruvate hydratase, lyase;
HET: 2PE; 2.10A {Streptococcus pneumoniae} SCOP:
c.1.11.1 d.54.1.1 PDB: 1iyx_A
Length = 444
Score = 27.1 bits (61), Expect = 9.9
Identities = 7/24 (29%), Positives = 12/24 (50%)
Query: 259 NDGGIDVIKKAIEKLGKRHGEHIA 282
+ G++ I AIE G G+ +
Sbjct: 225 TEDGVETILAAIEAAGYVPGKDVF 248
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.316 0.137 0.431
Gapped
Lambda K H
0.267 0.0496 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 5,817,338
Number of extensions: 369090
Number of successful extensions: 947
Number of sequences better than 10.0: 1
Number of HSP's gapped: 937
Number of HSP's successfully gapped: 33
Length of query: 356
Length of database: 6,701,793
Length adjustment: 95
Effective length of query: 261
Effective length of database: 4,049,298
Effective search space: 1056866778
Effective search space used: 1056866778
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.5 bits)
S2: 58 (26.7 bits)