RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= 018391
         (356 letters)



>d2bvca2 d.128.1.1 (A:105-478) Glutamine synthetase, C-terminal
           domain {Mycobacterium tuberculosis [TaxId: 1773]}
          Length = 374

 Score = 55.3 bits (132), Expect = 3e-09
 Identities = 44/217 (20%), Positives = 70/217 (32%), Gaps = 14/217 (6%)

Query: 142 PLGWPVGGYPGPQGPYYCGVGADKALGRDIVNSHYKACLYAGINI-SGINGEVMPGQWEF 200
             G P  GY       Y  V A      D+ +      + +G  +  G +     GQ E 
Sbjct: 66  ADGSPNRGYKVRHKGGYFPV-APNDQYVDLRDKMLTNLINSGFILEKGHHEVGSGGQAEI 124

Query: 201 QVGPCVGISSGDQLWMARYILERITEIAGVVLSFDPKPIKGDWNGAGAH--------ANY 252
                  + + D + + +YI++      G  ++F PKP+ GD               A  
Sbjct: 125 NYQFNSLLHAADDMQLYKYIIKNTAWQNGKTVTFMPKPLFGDNGSGMHCHQSLWKDGAPL 184

Query: 253 STKSMRNDGGIDVIKKAIEKLGKRHGE--HIAAYGEGNERRLTGRHETADINTFSWGVAN 310
                   G  D  +  I  L                + +RL      A IN   +   N
Sbjct: 185 MYDETGYAGLSDTARHYIGGLLHHAPSLLAFTNPTVNSYKRLVP-GYEAPINL-VYSQRN 242

Query: 311 RGASIRVGRDTEKEGKGYFEDRRPASNMDPYVVTSMI 347
           R A +R+            E R P S+ +PY+  S +
Sbjct: 243 RSACVRIPITGSNPKAKRLEFRSPDSSGNPYLAFSAM 279


>d1f52a2 d.128.1.1 (A:101-468) Glutamine synthetase, C-terminal
           domain {Salmonella typhimurium [TaxId: 90371]}
          Length = 368

 Score = 41.7 bits (97), Expect = 7e-05
 Identities = 44/220 (20%), Positives = 78/220 (35%), Gaps = 23/220 (10%)

Query: 142 PLGWPVGGYPGPQGPYYCGVGADKALGRDIVNSHYKACLYAGINISGINGEVM-PGQWEF 200
             G   G  PG +G Y+     D A  +DI +         G+ +   + EV   GQ E 
Sbjct: 64  YEGGNKGHRPGVKGGYFPVPPVDSA--QDIRSEMCLVMEQMGLVVEAHHHEVATAGQNEV 121

Query: 201 QVGPCVGISSGDQLWMARYILERITEIAGVVLSFDPKPIKGDWNGAGAHANYSTKSMRND 260
                      D++ + +Y++  +    G   +F PKP+ GD         +   S+  +
Sbjct: 122 ATRFNTMTKKADEIQIYKYVVHNVAHRFGKTATFMPKPMFGDNG----SGMHCHMSLAKN 177

Query: 261 GGIDVIKKAIEKLGKRHGEHIA-------------AYGEGNERRLTGRHETADINTFSWG 307
           G           L ++   +I                   + +RL   +E   +  +S  
Sbjct: 178 GTNLFSGDKYAGLSEQALYYIGGVIKHAKAINALANPTTNSYKRLVPGYEAPVMLAYSAR 237

Query: 308 VANRGASIRVGRDTEKEGKGYFEDRRPASNMDPYVVTSMI 347
             NR ASIR+      + +   E R P    +PY+  + +
Sbjct: 238 --NRSASIRIPVVASPKAR-RIEVRFPDPAANPYLCFAAL 274


>d1f52a1 d.15.9.1 (A:1-100) Glutamine synthetase, N-terminal domain
           {Salmonella typhimurium [TaxId: 90371]}
          Length = 100

 Score = 34.1 bits (78), Expect = 0.004
 Identities = 16/78 (20%), Positives = 31/78 (39%), Gaps = 7/78 (8%)

Query: 31  MDLRSKAR--TLPAPTTDPTKLPK--WNYDGSSTNQAPGDDSEVILYPQ--TVFKDPFRR 84
            D + K +  T+PA   +     +       S       ++S+++L P   T   DPF  
Sbjct: 22  TDTKGKEQHVTIPAHQVNAEFFEEGKMFDGSSIGGWKGINESDMVLMPDASTAVIDPFFA 81

Query: 85  GNNILVMCDAYTPA-GEP 101
            + +++ CD   P   + 
Sbjct: 82  DSTLIIRCDILEPGTLQG 99


>d2bvca1 d.15.9.1 (A:5-104) Glutamine synthetase, N-terminal domain
           {Mycobacterium tuberculosis [TaxId: 1773]}
          Length = 100

 Score = 31.5 bits (71), Expect = 0.043
 Identities = 18/78 (23%), Positives = 28/78 (35%), Gaps = 7/78 (8%)

Query: 31  MDLRSKAR--TLPAPTTDPTKL--PKWNYDGSSTNQAPGDDSEVILYPQ--TVFKDPFRR 84
            DL    +  T+PA   D +           S        +S+++L P   T   DPFR 
Sbjct: 22  CDLPGIMQHFTIPASAFDKSVFDDGLAFDGSSIRGFQSIHESDMLLLPDPETARIDPFRA 81

Query: 85  GNNILVMCDAYTPA-GEP 101
              + +    + P   EP
Sbjct: 82  AKTLNINFFVHDPFTLEP 99


>d1cc8a_ d.58.17.1 (A:) ATX1 metallochaperone protein (ATOX1)
           {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
          Length = 72

 Score = 27.4 bits (61), Expect = 0.51
 Identities = 6/39 (15%), Positives = 15/39 (38%), Gaps = 2/39 (5%)

Query: 240 KGDWNGAGAHANYSTKSMRNDGGIDV--IKKAIEKLGKR 276
           K + + +    +   + +     +    I + I+K GK 
Sbjct: 27  KLEPDVSKIDISLEKQLVDVYTTLPYDFILEKIKKTGKE 65


>d1wr8a_ c.108.1.10 (A:) Phosphoglycolate phosphatase, PGPase
           {Pyrococcus horikoshii [TaxId: 53953]}
          Length = 230

 Score = 29.2 bits (64), Expect = 0.72
 Identities = 10/27 (37%), Positives = 15/27 (55%)

Query: 248 AHANYSTKSMRNDGGIDVIKKAIEKLG 274
            +A+Y TK    +GG + I   +EK G
Sbjct: 202 ENADYVTKKEYGEGGAEAIYHILEKFG 228


>d1llaa2 a.86.1.1 (A:110-379) Arthropod hemocyanin {Horseshoe crab
           (Limulus polyphemus) [TaxId: 6850]}
          Length = 270

 Score = 27.0 bits (60), Expect = 3.7
 Identities = 13/51 (25%), Positives = 21/51 (41%), Gaps = 3/51 (5%)

Query: 213 QLWMARYILERITEIAGVV--LSFDPKPIKGDWNGAGAHANYSTKSMRNDG 261
           Q+  ARY  ER++     +   +   +P+ G        A+    S R DG
Sbjct: 97  QM-CARYDCERLSNGMHRMLPFNNFDEPLAGYAPHLTHVASGKYYSPRPDG 146


>d2pstx1 d.100.2.1 (X:8-68) Uncharacterized protein PA2412
           {Pseudomonas aeruginosa [TaxId: 287]}
          Length = 61

 Score = 23.9 bits (52), Expect = 7.3
 Identities = 7/26 (26%), Positives = 13/26 (50%)

Query: 129 EQEYTLLQKDINWPLGWPVGGYPGPQ 154
           E++Y++  +    P GW   G  G +
Sbjct: 12  EEQYSIWPEYKEIPQGWRAAGKSGLK 37


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.316    0.137    0.431 

Gapped
Lambda     K      H
   0.267   0.0705    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,428,875
Number of extensions: 70783
Number of successful extensions: 162
Number of sequences better than 10.0: 1
Number of HSP's gapped: 162
Number of HSP's successfully gapped: 8
Length of query: 356
Length of database: 2,407,596
Length adjustment: 86
Effective length of query: 270
Effective length of database: 1,226,816
Effective search space: 331240320
Effective search space used: 331240320
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.5 bits)
S2: 53 (24.2 bits)