Query 018392
Match_columns 356
No_of_seqs 213 out of 1435
Neff 8.2
Searched_HMMs 46136
Date Fri Mar 29 08:38:09 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018392.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/018392hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03145 Protein phosphatase 2 100.0 1.1E-51 2.4E-56 395.5 31.3 260 57-351 63-332 (365)
2 KOG0697 Protein phosphatase 1B 100.0 1.5E-51 3.2E-56 364.4 23.4 273 54-350 17-292 (379)
3 PTZ00224 protein phosphatase 2 100.0 4.4E-48 9.5E-53 371.8 31.1 257 52-351 15-273 (381)
4 KOG0698 Serine/threonine prote 100.0 3.7E-47 8.1E-52 362.1 30.9 255 58-352 38-307 (330)
5 PF00481 PP2C: Protein phospha 100.0 9.3E-48 2E-52 354.7 19.1 246 60-341 1-254 (254)
6 KOG0699 Serine/threonine prote 100.0 2.5E-44 5.5E-49 328.5 19.1 176 156-355 327-509 (542)
7 COG0631 PTC1 Serine/threonine 100.0 2E-43 4.3E-48 326.2 24.0 248 56-351 5-254 (262)
8 KOG0700 Protein phosphatase 2C 100.0 1.7E-43 3.8E-48 330.6 22.7 255 70-336 82-378 (390)
9 cd00143 PP2Cc Serine/threonine 100.0 1.8E-39 3.8E-44 297.7 32.2 251 60-348 2-254 (254)
10 smart00332 PP2Cc Serine/threon 100.0 6.1E-39 1.3E-43 294.9 32.7 250 58-346 5-255 (255)
11 PRK14559 putative protein seri 100.0 9.2E-38 2E-42 316.0 27.4 247 58-351 374-637 (645)
12 KOG1323 Serine/threonine phosp 100.0 4.9E-31 1.1E-35 239.3 20.4 238 86-351 143-489 (493)
13 KOG1379 Serine/threonine prote 100.0 5E-29 1.1E-33 226.3 19.7 206 72-348 90-330 (330)
14 KOG0618 Serine/threonine phosp 99.9 3E-22 6.4E-27 203.4 17.1 254 49-352 512-775 (1081)
15 PF13672 PP2C_2: Protein phosp 99.9 6.4E-21 1.4E-25 170.8 13.2 188 64-316 3-196 (212)
16 smart00331 PP2C_SIG Sigma fact 99.8 1.6E-16 3.4E-21 140.2 22.4 185 60-333 5-192 (193)
17 TIGR02865 spore_II_E stage II 99.7 6.9E-15 1.5E-19 154.1 22.6 194 66-348 560-763 (764)
18 PF07228 SpoIIE: Stage II spor 99.5 1.2E-12 2.5E-17 115.3 21.2 178 85-349 2-193 (193)
19 COG2208 RsbU Serine phosphatas 98.6 8.1E-06 1.8E-10 79.4 21.9 189 72-349 161-366 (367)
20 COG3700 AphA Acid phosphatase 54.2 16 0.00036 31.7 3.5 49 288-336 71-130 (237)
21 PRK10693 response regulator of 52.9 2E+02 0.0043 26.9 12.9 105 73-191 150-259 (303)
22 PRK06369 nac nascent polypepti 45.9 1.3E+02 0.0028 24.1 7.3 56 270-328 36-98 (115)
23 PF09436 DUF2016: Domain of un 45.2 13 0.00028 27.2 1.4 18 286-304 26-43 (72)
24 COG4079 Uncharacterized protei 31.3 4.2E+02 0.009 24.3 9.6 56 162-219 2-58 (293)
25 COG1539 FolB Dihydroneopterin 29.8 2.1E+02 0.0045 23.1 6.3 58 292-351 42-101 (121)
26 COG2168 DsrH Uncharacterized c 27.6 18 0.0004 27.9 -0.2 54 282-343 20-73 (96)
27 PF06972 DUF1296: Protein of u 26.0 1.1E+02 0.0024 21.4 3.4 26 302-330 19-44 (60)
28 cd00534 DHNA_DHNTPE Dihydroneo 24.6 2.5E+02 0.0055 22.1 6.0 56 293-348 42-100 (118)
29 PF05402 PqqD: Coenzyme PQQ sy 23.8 1.7E+02 0.0038 20.3 4.4 41 289-331 2-42 (68)
30 PRK11593 folB bifunctional dih 23.7 2.7E+02 0.0058 22.0 6.0 45 292-336 41-87 (119)
31 TIGR00525 folB dihydroneopteri 23.6 3.3E+02 0.0072 21.3 6.5 58 293-350 41-101 (116)
32 COG3411 Ferredoxin [Energy pro 22.9 1.8E+02 0.0039 20.7 4.0 35 289-323 18-53 (64)
33 PF01436 NHL: NHL repeat; Int 20.5 1.8E+02 0.004 16.5 3.5 20 167-186 9-28 (28)
34 COG0416 PlsX Fatty acid/phosph 20.1 5.1E+02 0.011 24.9 7.7 27 126-152 303-329 (338)
No 1
>PLN03145 Protein phosphatase 2c; Provisional
Probab=100.00 E-value=1.1e-51 Score=395.46 Aligned_cols=260 Identities=30% Similarity=0.481 Sum_probs=224.7
Q ss_pred CCeeEEEEeccCCCCCCCceEEEeeCC----------CCCeEEEEEEcCCCChhHHHHHHHHHHHHHHHHHhcCccCCCC
Q 018392 57 AGIRWGSVSLQGLREEMEDGAVIQSDG----------LDGFSFAAVFDGHGGVSTVKFLRDELYKECVAALQGGLLLSGK 126 (356)
Q Consensus 57 ~~~~~~~~s~~G~r~~nED~~~~~~~~----------~~~~~~~~V~DG~GG~~~a~~~~~~l~~~~~~~l~~~~~~~~~ 126 (356)
..++++..|++|.|+.|||++++..+. .....||||||||||+.+++++++++++.+.+...
T Consensus 63 ~~~~~~~~s~~G~R~~nED~~~~~~~~~~~~~~~~~~~~~~~lf~V~DGhGG~~age~as~~l~~~i~~~~~-------- 134 (365)
T PLN03145 63 PVVRSGAWADIGSRSSMEDVYICVDNFMSDFGLKNSEDGPSAFYGVFDGHGGKHAADFACYHLPRFIVEDED-------- 134 (365)
T ss_pred CceEEEEEccccCCCCCCCceEecccccccccccccCCCCceEEEEEeCCCCHHHHHHHHHHHHHHHHhhhc--------
Confidence 457889999999999999998875431 12357999999999999999999999998865321
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHhccCcCCCCceEEEEEEeCCeEEEEEeccccEEEecCCceeecCCCCcCCCCCCC
Q 018392 127 DFDAIKKALQEAFENVDMKLLNRLEMNAEEDESGATATVMFIGRDILFISHVGDCCVVLSRTGKADVLTNPHRPYGSGQV 206 (356)
Q Consensus 127 ~~~~~~~~l~~a~~~~~~~l~~~~~~~~~~~~~GsT~~~~~i~~~~l~ianvGDSra~l~r~g~~~~lt~dH~~~~~~~~ 206 (356)
....++++|.++|.++|+.|....... ....+|||++++++.++.+|++|+||||+|++++|++++||+||++.+
T Consensus 135 ~~~~~~~al~~af~~~d~~~~~~~~~~-~~~~~GTTavv~li~~~~l~vaNvGDSRayl~r~g~~~~LT~DH~~~~---- 209 (365)
T PLN03145 135 FPREIEKVVSSAFLQTDTAFAEACSLD-ASLASGTTALAALVVGRSLVVANAGDCRAVLCRRGKAIEMSRDHKPMC---- 209 (365)
T ss_pred cchhHHHHHHHHHHHHhHHHHhhhccc-cCCCCcCcEEEEEEECCeEEEEecCCceEEEEcCCeEEEecCCCCCCC----
Confidence 224678889999999999987653322 234599999999999999999999999999999999999999999987
Q ss_pred CHHHHHHHHHcCCEEeCCeeeceecccccccCcccccchhhhhhcccCCCccccchhcccccCCCcEEeeceEEEEEecC
Q 018392 207 SLQEIRRIREAGGWISNGRICGDIAVSRAFGDIRFKTKKNEMLKKGVNEGRWSEKFVSRVQLNKDLVIASPDIFQVSLGS 286 (356)
Q Consensus 207 ~~~E~~Ri~~~gg~v~~~rv~g~l~~sra~Gd~~~k~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~v~~~p~i~~~~l~~ 286 (356)
+.|+.||++.||+|.++|+.|.+.+||||||+.+|..+ ...+..++++|++..+++.+
T Consensus 210 -~~E~~RI~~~Gg~v~~g~v~g~l~vTRalGD~~~k~~k---------------------~~~~~~vs~ePdv~~~~l~~ 267 (365)
T PLN03145 210 -SKERKRIEASGGYVYDGYLNGQLNVARALGDWHMEGMK---------------------GSDGGPLSAEPELMTTQLTE 267 (365)
T ss_pred -HHHHHHHHHcCCceecceECCccccccccccccccccc---------------------cccCCCcceEEEEEEEECCC
Confidence 89999999999999999999999999999998887311 01123467899999999999
Q ss_pred CCeEEEEEcCCCcCCCChHHHHHHHHHHHHccCCHHHHHHHHHHHHHhcCCCCCcEEEEEEcCCC
Q 018392 287 DAEFVLLASDGLWDYMNSSDAVKFVRNQLQQHGDVQLACEALAQAALDQHSQDNISIVIADLGYA 351 (356)
Q Consensus 287 ~~d~lvL~SDGl~d~l~~~ei~~~v~~~l~~~~~~~~~a~~l~~~A~~~g~~DNiTvIvv~l~~~ 351 (356)
+|+|||||||||||+|+++++++++++.+....+++++|+.|++.|+++++.||||||||+|+..
T Consensus 268 ~D~fLILaSDGLwdvls~ee~v~~i~~~l~~~~~p~~aa~~Lv~~Al~rgs~DNITvIVV~l~~~ 332 (365)
T PLN03145 268 EDEFLIIGCDGIWDVFRSQNAVDFARRRLQEHNDPVMCSKELVDEALKRKSGDNLAVVVVCFQSQ 332 (365)
T ss_pred CCEEEEEeCCccccCcCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhCCCCCCEEEEEEEeecC
Confidence 98899999999999999999999999888888899999999999999999999999999999863
No 2
>KOG0697 consensus Protein phosphatase 1B (formerly 2C) [Signal transduction mechanisms]
Probab=100.00 E-value=1.5e-51 Score=364.36 Aligned_cols=273 Identities=30% Similarity=0.547 Sum_probs=242.5
Q ss_pred CCCCCeeEEEEeccCCCCCCCceEEEeeC---CCCCeEEEEEEcCCCChhHHHHHHHHHHHHHHHHHhcCccCCCCChHH
Q 018392 54 SGVAGIRWGSVSLQGLREEMEDGAVIQSD---GLDGFSFAAVFDGHGGVSTVKFLRDELYKECVAALQGGLLLSGKDFDA 130 (356)
Q Consensus 54 ~~~~~~~~~~~s~~G~r~~nED~~~~~~~---~~~~~~~~~V~DG~GG~~~a~~~~~~l~~~~~~~l~~~~~~~~~~~~~ 130 (356)
.+..+++||..|+||||-+|||++..... ....|+||||||||.|...+.+++++|.+.+...-...........+.
T Consensus 17 G~GNglryg~SSMQGWR~eMEDah~A~~~l~~~l~dWSfFAVfDGHAGs~va~~c~~hLlehi~sse~F~~~~k~gsv~~ 96 (379)
T KOG0697|consen 17 GEGNGLRYGVSSMQGWRVEMEDAHTAVAGLPSPLEDWSFFAVFDGHAGSQVANHCAEHLLEHIISSEEFRGMTKNGSVEN 96 (379)
T ss_pred CcCCceeeeeccccchhhhhhhhhhhhhcCCCCccCceEEEEEcCccchHHHHHHHHHHHHHhhhhHHHhhhccCCcHHH
Confidence 46678999999999999999999876543 367899999999999999999999999998875433211122345678
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhccCcCCCCceEEEEEEeCCeEEEEEeccccEEEecCCceeecCCCCcCCCCCCCCHHH
Q 018392 131 IKKALQEAFENVDMKLLNRLEMNAEEDESGATATVMFIGRDILFISHVGDCCVVLSRTGKADVLTNPHRPYGSGQVSLQE 210 (356)
Q Consensus 131 ~~~~l~~a~~~~~~~l~~~~~~~~~~~~~GsT~~~~~i~~~~l~ianvGDSra~l~r~g~~~~lt~dH~~~~~~~~~~~E 210 (356)
.+.-|+..|..+|+.+...........++|||++.+++....+|++|+||||++++|+|++..-|.||+|++ +.|
T Consensus 97 ~~~GIrtGFL~iDE~mr~~~~~~~~~drsGsTAVcv~vsp~h~y~~NcGDSRavl~rng~~~f~TqDHKP~~-----p~E 171 (379)
T KOG0697|consen 97 VEKGIRTGFLSIDEIMRTLSDISKGSDRSGSTAVCVFVSPTHIYIINCGDSRAVLCRNGEVVFSTQDHKPYL-----PKE 171 (379)
T ss_pred HHhhHhhcceeHHHHHhhhhhhhcccccCCceEEEEEecCceEEEEecCcchhheecCCceEEeccCCCCCC-----hHH
Confidence 899999999999998887655444455699999999999999999999999999999999999999999998 999
Q ss_pred HHHHHHcCCEEeCCeeeceecccccccCcccccchhhhhhcccCCCccccchhcccccCCCcEEeeceEEEEEecCCCeE
Q 018392 211 IRRIREAGGWISNGRICGDIAVSRAFGDIRFKTKKNEMLKKGVNEGRWSEKFVSRVQLNKDLVIASPDIFQVSLGSDAEF 290 (356)
Q Consensus 211 ~~Ri~~~gg~v~~~rv~g~l~~sra~Gd~~~k~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~v~~~p~i~~~~l~~~~d~ 290 (356)
++||+.+||.|.-.||+|.|++||||||+.||- ..+.++..++|+++|+++.+.....|+|
T Consensus 172 keRIqnAGGSVMIqRvNGsLAVSRAlGDydyK~-------------------v~~kgp~eQlVSPEPev~~~~R~eedeF 232 (379)
T KOG0697|consen 172 KERIQNAGGSVMIQRVNGSLAVSRALGDYDYKN-------------------VPGKGPTEQLVSPEPEVYIIERSEEDEF 232 (379)
T ss_pred HHHHhcCCCeEEEEEecceeeeehhccCccccc-------------------CCCCCchhcccCCCCceEEeeccccCcE
Confidence 999999999999999999999999999999982 2235677899999999999998888899
Q ss_pred EEEEcCCCcCCCChHHHHHHHHHHHHccCCHHHHHHHHHHHHHhcCCCCCcEEEEEEcCC
Q 018392 291 VLLASDGLWDYMNSSDAVKFVRNQLQQHGDVQLACEALAQAALDQHSQDNISIVIADLGY 350 (356)
Q Consensus 291 lvL~SDGl~d~l~~~ei~~~v~~~l~~~~~~~~~a~~l~~~A~~~g~~DNiTvIvv~l~~ 350 (356)
|||++||+||.|+++|++++|+..+.-..+..++|..+++..+-+|++||+|+|+|-|.+
T Consensus 233 ivlACDGIwDVMtneelcefv~sRl~Vt~dL~~vcn~VvDtCLhKGSRDNMsivlvcfp~ 292 (379)
T KOG0697|consen 233 IVLACDGIWDVMTNEELCEFVKSRLEVTSDLEEVCNDVVDTCLHKGSRDNMSIVLVCFPG 292 (379)
T ss_pred EEEEccchhhhcccHHHHHHHHhhheecccHHHHHHHHHHHHHhccCccCceEEEEecCC
Confidence 999999999999999999999999988999999999999999999999999999998853
No 3
>PTZ00224 protein phosphatase 2C; Provisional
Probab=100.00 E-value=4.4e-48 Score=371.82 Aligned_cols=257 Identities=31% Similarity=0.482 Sum_probs=218.0
Q ss_pred CCCCCCCeeEEEEeccCCCCCCCceEEEeeCCCCCeEEEEEEcCCCChhHHHHHHHHHHHHHHHHHhcCccCCCCChHHH
Q 018392 52 SLSGVAGIRWGSVSLQGLREEMEDGAVIQSDGLDGFSFAAVFDGHGGVSTVKFLRDELYKECVAALQGGLLLSGKDFDAI 131 (356)
Q Consensus 52 ~~~~~~~~~~~~~s~~G~r~~nED~~~~~~~~~~~~~~~~V~DG~GG~~~a~~~~~~l~~~~~~~l~~~~~~~~~~~~~~ 131 (356)
.......+.++..+++|.|+.|||++++... +++.+|+|||||||..+|+++++.+.+.+..... ...
T Consensus 15 ~~~~~~~~~~g~~s~~G~R~~nED~~~v~~~--~~~~lfgVfDGHgG~~~S~~~~~~l~~~l~~~~~----------~~~ 82 (381)
T PTZ00224 15 DRAGNSIFRCASACVNGYRESMEDAHLLYLT--DDWGFFGVFDGHVNDECSQYLARAWPQALEKEPE----------PMT 82 (381)
T ss_pred ccCCCccEEEEEEeCCCCCCCCCCeeEeccC--CCceEEEEEeCCCcHHHHHHHHHHHHHHHHhccc----------ccc
Confidence 3357788999999999999999999886543 3446999999999999999999999876543210 112
Q ss_pred HHHHHHHHHHHHHHHHHHHHhccCcCCCCceEEEEEEe-CCeEEEEEeccccEEEecCCceeecCCCCcCCCCCCCCHHH
Q 018392 132 KKALQEAFENVDMKLLNRLEMNAEEDESGATATVMFIG-RDILFISHVGDCCVVLSRTGKADVLTNPHRPYGSGQVSLQE 210 (356)
Q Consensus 132 ~~~l~~a~~~~~~~l~~~~~~~~~~~~~GsT~~~~~i~-~~~l~ianvGDSra~l~r~g~~~~lt~dH~~~~~~~~~~~E 210 (356)
.+.|.+++..+|+.+.... ..+|||++++++. ++.++++|+||||+|++|+|++++||+||++.+ +.|
T Consensus 83 ~~~l~~a~~~~d~~i~~~~------~~~GsTatv~lI~~~~~l~vaNVGDSRayl~r~g~~~~LT~DH~~~~-----~~E 151 (381)
T PTZ00224 83 DERMEELCLEIDEEWMDSG------REGGSTGTFCVIMKDVHLQVGNVGDSRVLVCRDGKLVFATEDHKPNN-----PGE 151 (381)
T ss_pred HHHHHHHHHHHHHHHHhcc------cCCCCeEEEEEEEECCEEEEEEcccceEEEEECCEEEEcccCCCCCC-----HHH
Confidence 3458899999999987531 2469999988875 579999999999999999999999999999987 789
Q ss_pred HHHHHHcCCEEeCCeeeceecccccccCcccccchhhhhhcccCCCccccchhcccccCCCcEEeeceEEEEEecCCCeE
Q 018392 211 IRRIREAGGWISNGRICGDIAVSRAFGDIRFKTKKNEMLKKGVNEGRWSEKFVSRVQLNKDLVIASPDIFQVSLGSDAEF 290 (356)
Q Consensus 211 ~~Ri~~~gg~v~~~rv~g~l~~sra~Gd~~~k~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~v~~~p~i~~~~l~~~~d~ 290 (356)
+.||.+.||.+..+|++|.+.+||+|||..+|.+.. ....++.|+++|++..+.+.++ |+
T Consensus 152 ~~RI~~~gg~v~~~Rv~G~l~vTRalGd~~~K~~~~-------------------~~~~~~~v~~~Pdi~~~~l~~~-D~ 211 (381)
T PTZ00224 152 RQRIEACGGRVVSNRVDGDLAVSRAFGDRSFKVKGT-------------------GDYLEQKVIAVPDVTHLTCQSN-DF 211 (381)
T ss_pred HhHHHHccCEeccccccCceeeecccCCcccccccc-------------------cccccCcceeeeEEEEEECCCC-CE
Confidence 999999999999999999999999999998884321 0122356789999999999998 89
Q ss_pred EEEEcCCCcC-CCChHHHHHHHHHHHHccCCHHHHHHHHHHHHHhcCCCCCcEEEEEEcCCC
Q 018392 291 VLLASDGLWD-YMNSSDAVKFVRNQLQQHGDVQLACEALAQAALDQHSQDNISIVIADLGYA 351 (356)
Q Consensus 291 lvL~SDGl~d-~l~~~ei~~~v~~~l~~~~~~~~~a~~l~~~A~~~g~~DNiTvIvv~l~~~ 351 (356)
|||||||||| +++++|+++++.+.+....+++.+|+.|++.|+.+|+.||||||||++...
T Consensus 212 llLaSDGL~d~~ls~eEi~~iv~~~l~~~~~~~~aA~~Lv~~A~~rGs~DNITvIvV~~~~~ 273 (381)
T PTZ00224 212 IILACDGVFEGNFSNEEVVAFVKEQLETCDDLAVVAGRVCDEAIRRGSKDNISCLIVQLKDG 273 (381)
T ss_pred EEEECCCcCcCccCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCCCCEEEEEEEeeCC
Confidence 9999999999 899999999998777677899999999999999999999999999999743
No 4
>KOG0698 consensus Serine/threonine protein phosphatase [Signal transduction mechanisms]
Probab=100.00 E-value=3.7e-47 Score=362.09 Aligned_cols=255 Identities=40% Similarity=0.590 Sum_probs=222.3
Q ss_pred Cee-EEEEeccCCCCCCCceEEEeeCC------CC-CeEEEEEEcCCCChhHHHHHHHHHHHHHHHHHhcCccCCCCChH
Q 018392 58 GIR-WGSVSLQGLREEMEDGAVIQSDG------LD-GFSFAAVFDGHGGVSTVKFLRDELYKECVAALQGGLLLSGKDFD 129 (356)
Q Consensus 58 ~~~-~~~~s~~G~r~~nED~~~~~~~~------~~-~~~~~~V~DG~GG~~~a~~~~~~l~~~~~~~l~~~~~~~~~~~~ 129 (356)
.+. .+.++.+|+|..|||++...... .. ...||||||||||..+|+|+.++|+..+.+.+... ....
T Consensus 38 ~~~~~~~~~~~~~r~~med~~~~~~~~~~~~~~~~~~~~ffgVfDGHGG~~~A~~~~~~L~~~l~~~~~~~-----~~~~ 112 (330)
T KOG0698|consen 38 SYRLGSLLSIRGRRRKMEDRHVQLPDFLEEDVGGEQDTAFFGVFDGHGGDLAAKFAAKHLHKNLLEQLAFP-----KDRQ 112 (330)
T ss_pred cccceEEEecCCCCCccCcceeecccccccccCCCCceEEEEEEeCCCCHHHHHHHHHHHHHHHHhhhhcc-----cchH
Confidence 344 44558888999999998876652 22 47899999999999999999999999999877632 1125
Q ss_pred HHHHHHHHHHH-HHHHHHHHHHHhccCcCCCCceEEEEEEeCC-eEEEEEeccccEEEecCC-ceeecCCCCcCCCCCCC
Q 018392 130 AIKKALQEAFE-NVDMKLLNRLEMNAEEDESGATATVMFIGRD-ILFISHVGDCCVVLSRTG-KADVLTNPHRPYGSGQV 206 (356)
Q Consensus 130 ~~~~~l~~a~~-~~~~~l~~~~~~~~~~~~~GsT~~~~~i~~~-~l~ianvGDSra~l~r~g-~~~~lt~dH~~~~~~~~ 206 (356)
.++.++.++|. .+|..+..+ ......+|||++++++.++ +||+||+|||||+|++.| ++++||.||+|++
T Consensus 113 ~~~~a~~~~F~~~~D~~~~~~---~~~~~~~gstav~~vi~~~~~l~vaN~GDSRaVl~~~~~~a~~Ls~DHkP~~---- 185 (330)
T KOG0698|consen 113 DVKDALRRAFLTKTDSEFLEK---REDNRSGGSTAVVALIKKGRKLYVANVGDSRAVLSRKGGVAVQLSVDHKPDR---- 185 (330)
T ss_pred HHHHHHHHHHHHHHHHHHHhh---ccCCCCCcceeeeeeEecCCEEEEEEcCCCcEEEecCCCeeeeCCCCCCCCc----
Confidence 78999999999 699999875 2224678888888888755 999999999999999866 8999999999987
Q ss_pred CHHHHHHHHHcCCEEeC----CeeeceecccccccCcccccchhhhhhcccCCCccccchhcccccCCCcEEeeceEEEE
Q 018392 207 SLQEIRRIREAGGWISN----GRICGDIAVSRAFGDIRFKTKKNEMLKKGVNEGRWSEKFVSRVQLNKDLVIASPDIFQV 282 (356)
Q Consensus 207 ~~~E~~Ri~~~gg~v~~----~rv~g~l~~sra~Gd~~~k~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~v~~~p~i~~~ 282 (356)
++|+.||+++||+|.. .||+|.|++||||||+.+|. ++|+++|++...
T Consensus 186 -~~E~~RI~~~GG~v~~~~~~~Rv~G~LavsRa~GD~~~k~---------------------------~~v~a~Pei~~~ 237 (330)
T KOG0698|consen 186 -EDERERIEAAGGRVSNWGGVWRVNGVLAVSRAFGDVELKS---------------------------QGVIAEPEIQQV 237 (330)
T ss_pred -HHHHHHHHHcCCEEEEcCCcceEeceEEEeeecCCHHhcC---------------------------CcEecCCceEEE
Confidence 8999999999999984 39999999999999999983 678999999999
Q ss_pred EecCCCeEEEEEcCCCcCCCChHHHHHHHHHHHHccCCHHHHHHHHHHHHHhcCCCCCcEEEEEEcCCCc
Q 018392 283 SLGSDAEFVLLASDGLWDYMNSSDAVKFVRNQLQQHGDVQLACEALAQAALDQHSQDNISIVIADLGYAS 352 (356)
Q Consensus 283 ~l~~~~d~lvL~SDGl~d~l~~~ei~~~v~~~l~~~~~~~~~a~~l~~~A~~~g~~DNiTvIvv~l~~~~ 352 (356)
.+.+.++||||+||||||.|+++|++++|+..+.....+..++..|.+.|..+++.||||||||.|....
T Consensus 238 ~~~~~deFLiLasDGiwDv~s~qeav~~V~~~~~~~~~~~~a~~~l~~~a~~~~s~DnitvvvV~l~~~~ 307 (330)
T KOG0698|consen 238 KINSDDEFLILASDGIWDVVSNQEAVDLVRDELASISSPLAAAKLLATEALSRGSKDNITVVVVRLKSSP 307 (330)
T ss_pred EcCCCCcEEEEeCCchhcccChHHHHHHHHHHhhccccHHHHHHHHHHHHhhcCCCCCeEEEEEEecCcc
Confidence 9999889999999999999999999999998776678999999999999999999999999999998653
No 5
>PF00481 PP2C: Protein phosphatase 2C; InterPro: IPR001932 This domain is found in protein phosphatase 2C, as well as other proteins eg. pyruvate dehydrogenase (lipoamide)-phosphatase (3.1.3.43 from EC), adenylate cyclase (4.6.1.1 from EC) and some bacterial stage II sporulation E proteins (3.1.3.16 from EC). Protein phosphatase 2C (PP2C) is one of the four major classes of mammalian serine/threonine specific protein phosphatases (3.1.3.16 from EC). PP2C [] is a monomeric enzyme of about 42 Kd which shows broad substrate specificity and is dependent on divalent cations (mainly manganese and magnesium) for its activity. Its exact physiological role is still unclear. Three isozymes are currently known in mammals: PP2C-alpha, -beta and -gamma. In yeast, there are at least four PP2C homologs: phosphatase PTC1 [], which has weak tyrosine phosphatase activity in addition to its activity on serines, phosphatases PTC2 and PTC3, and hypothetical protein YBR125c. Isozymes of PP2C are also known from Arabidopsis thaliana (ABI1, PPH1), Caenorhabditis elegans (FEM-2, F42G9.1, T23F11.1), Leishmania chagasi and Paramecium tetraurelia. In A. thaliana, the kinase associated protein phosphatase (KAPP) [] is an enzyme that dephosphorylates the Ser/Thr receptor-like kinase RLK5 and which contains a C-terminal PP2C domain. PP2C does not seem to be evolutionary related to the main family of serine/ threonine phosphatases: PP1, PP2A and PP2B. However, it is significantly similar to the catalytic subunit of pyruvate dehydrogenase phosphatase 3.1.3.43 from EC (PDPC) [], which catalyzes dephosphorylation and concomitant reactivation of the alpha subunit of the E1 component of the pyruvate dehydrogenase complex. PDPC is a mitochondrial enzyme and, like PP2C, is magnesium-dependent.; GO: 0003824 catalytic activity; PDB: 2I0O_A 2POP_C 2POM_A 2J4O_A 2I44_B 3MQ3_A 3N3C_A 2PNQ_B 2P8E_A 2IQ1_A ....
Probab=100.00 E-value=9.3e-48 Score=354.67 Aligned_cols=246 Identities=42% Similarity=0.601 Sum_probs=208.1
Q ss_pred eEEEEeccCCCCCCCceEEEeeCC-----CCCeEEEEEEcCCCChhHHHHHHHHHHHHHHHHHhcCccCCCCChHHHHHH
Q 018392 60 RWGSVSLQGLREEMEDGAVIQSDG-----LDGFSFAAVFDGHGGVSTVKFLRDELYKECVAALQGGLLLSGKDFDAIKKA 134 (356)
Q Consensus 60 ~~~~~s~~G~r~~nED~~~~~~~~-----~~~~~~~~V~DG~GG~~~a~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~ 134 (356)
.+++.+.+|.|+.|||.+++.... .....+|+|||||||..+++++++.+...+...+.... ...+.++
T Consensus 1 ~~~~~~~~g~r~~~eD~~~~~~~~~~~~~~~~~~l~~V~DGhgG~~~a~~~~~~l~~~l~~~~~~~~------~~~~~~a 74 (254)
T PF00481_consen 1 DYGVSSMQGVRKEMEDRHLIIQNFNSNSGNDNVSLFGVFDGHGGSEAAEYASQNLPEFLKENLSFND------GNDIEEA 74 (254)
T ss_dssp EEEEEEEECTSSSHHEEEEEEEEETCCTTEEEEEEEEEEEEESSSHHHHHHHHHHHHHHHHHHHHHT------CHHHHHH
T ss_pred CcCeecCCCCCCcccCEEEEecCccccCCCCCcEEEEEecCCCChhhHHHHHHHHHHHHHhhccccc------ccchhhc
Confidence 378899999999999999887632 45678999999999999999999999987777654321 1278899
Q ss_pred HHHHHHH-HHHHHHHHHHhccCcCCCCceEEEEEEeCCeEEEEEeccccEEEecCCcee-ecCCCCcCCCCCCCCHHHHH
Q 018392 135 LQEAFEN-VDMKLLNRLEMNAEEDESGATATVMFIGRDILFISHVGDCCVVLSRTGKAD-VLTNPHRPYGSGQVSLQEIR 212 (356)
Q Consensus 135 l~~a~~~-~~~~l~~~~~~~~~~~~~GsT~~~~~i~~~~l~ianvGDSra~l~r~g~~~-~lt~dH~~~~~~~~~~~E~~ 212 (356)
|..+|.. ++..+....+.. ....+|||++++++.++++|+||+||||+|+++.+... +||.||+|.+ +.|+.
T Consensus 75 l~~a~~~~~~~~~~~~~~~~-~~~~~GsTa~v~li~~~~l~vanvGDSravl~~~~~~~~~Lt~dH~~~~-----~~E~~ 148 (254)
T PF00481_consen 75 LRQAFLAFTDESLYSDSENN-ESSKSGSTATVALIDGNKLYVANVGDSRAVLCRNGGIIKQLTRDHKPSN-----PDERE 148 (254)
T ss_dssp HHHHHHHHHHHHHHHHHHHH-THTTSEEEEEEEEEETTEEEEEEESS-EEEEEETTEEEEESS---STTS-----HHHHH
T ss_pred ccceeeeccccccccccccc-ccccccccccccccccceeEEEeeeeeeeeeeeccccccccccccccch-----hhccc
Confidence 9999999 888888744333 56789999999999999999999999999999999888 9999999987 89999
Q ss_pred HHHHcCCEEe-CCeeeceecccccccCcccccchhhhhhcccCCCccccchhcccccCCCcEEeeceEEEEEecCCCeEE
Q 018392 213 RIREAGGWIS-NGRICGDIAVSRAFGDIRFKTKKNEMLKKGVNEGRWSEKFVSRVQLNKDLVIASPDIFQVSLGSDAEFV 291 (356)
Q Consensus 213 Ri~~~gg~v~-~~rv~g~l~~sra~Gd~~~k~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~v~~~p~i~~~~l~~~~d~l 291 (356)
||+++||.+. .+|+.|.+++||+|||..+|++. +++|+++|++..+++.++++||
T Consensus 149 RI~~~gg~v~~~~rv~g~l~~sRalGd~~~k~~~------------------------~~~v~~~P~i~~~~l~~~d~fl 204 (254)
T PF00481_consen 149 RIRKAGGRVSENGRVNGVLAVSRALGDFDLKPPG------------------------KPGVIAEPDISEVDLTPDDEFL 204 (254)
T ss_dssp HHHHTT-GEEETEEETTTBSSSB-EE-GGGTTCT------------------------SSSSB---EEEEEEEBTTEEEE
T ss_pred eeeccccccccchhhhhccccccccccccccccc------------------------cceeeeecccccccccccceEE
Confidence 9999999999 89999999999999999998422 3688999999999999997799
Q ss_pred EEEcCCCcCCCChHHHHHHHHHHHHccCCHHHHHHHHHHHHHhcCCCCCc
Q 018392 292 LLASDGLWDYMNSSDAVKFVRNQLQQHGDVQLACEALAQAALDQHSQDNI 341 (356)
Q Consensus 292 vL~SDGl~d~l~~~ei~~~v~~~l~~~~~~~~~a~~l~~~A~~~g~~DNi 341 (356)
|||||||||+|+++|+++++++......+|+.+|+.|++.|+++|+.|||
T Consensus 205 vlaSDGlwd~l~~~ei~~~v~~~~~~~~~~~~~a~~L~~~A~~~gs~DNi 254 (254)
T PF00481_consen 205 VLASDGLWDVLSNEEIVDIVRESLNSGRSPQEAAEKLVDEAIARGSKDNI 254 (254)
T ss_dssp EEE-HHHHTTSHHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHTTHHSHE
T ss_pred EEEcccccccCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCC
Confidence 99999999999999999999988777778999999999999999999997
No 6
>KOG0699 consensus Serine/threonine protein phosphatase [Signal transduction mechanisms]
Probab=100.00 E-value=2.5e-44 Score=328.48 Aligned_cols=176 Identities=37% Similarity=0.661 Sum_probs=162.4
Q ss_pred cCCCCceEEEEEEeCCeEEEEEeccccEEEecCCceeecCCCCcCCCCCCCCHHHHHHHHHcCCEEe-CCeeeceecccc
Q 018392 156 EDESGATATVMFIGRDILFISHVGDCCVVLSRTGKADVLTNPHRPYGSGQVSLQEIRRIREAGGWIS-NGRICGDIAVSR 234 (356)
Q Consensus 156 ~~~~GsT~~~~~i~~~~l~ianvGDSra~l~r~g~~~~lt~dH~~~~~~~~~~~E~~Ri~~~gg~v~-~~rv~g~l~~sr 234 (356)
...+|||++|+++.+.+|||||.||||++++|+|+.+-++.||+|.+ ..|..||.++||.|. +|||+|.|+++|
T Consensus 327 G~DSGtTAvVcLv~g~~liVANAGDSRcV~sr~GkAvdmS~DHKPED-----evE~~RI~~AGG~vtlDGRVNGGLNLSR 401 (542)
T KOG0699|consen 327 GEDSGTTAVVCLVGGDKLIVANAGDSRCVLSRNGKAVDMSVDHKPED-----EVETNRIHAAGGQVTLDGRVNGGLNLSR 401 (542)
T ss_pred CCCCCceEEEEEecCceEEEecCCCcceEEecCCceeecccCCCccc-----HHHHHHHHhcCCeEeecceecCccchhh
Confidence 34579999999999999999999999999999999999999999987 799999999999998 999999999999
Q ss_pred cccCcccccchhhhhhcccCCCccccchhcccccCCCcEEeeceEEEEEecCCCeEEEEEcCCCcCCCChHHHHHHHHHH
Q 018392 235 AFGDIRFKTKKNEMLKKGVNEGRWSEKFVSRVQLNKDLVIASPDIFQVSLGSDAEFVLLASDGLWDYMNSSDAVKFVRNQ 314 (356)
Q Consensus 235 a~Gd~~~k~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~v~~~p~i~~~~l~~~~d~lvL~SDGl~d~l~~~ei~~~v~~~ 314 (356)
||||+.||.+.+ +++..++|++-|+|....|.+.++|+||++||+|++|+.++++++|+..
T Consensus 402 A~GDHaYK~N~~-------------------Lp~eEQMIsALPDiK~l~lTpedEFmVvACDGIWN~MsSqeVVdFvr~~ 462 (542)
T KOG0699|consen 402 AFGDHAYKKNQE-------------------LPLEEQMISALPDIKILALTPEDEFMVVACDGIWNSMSSQEVVDFVRDL 462 (542)
T ss_pred hhhhhhhhcccC-------------------CChHHHHhhhcccceeEeecCcccEEEEEccchhhhccHHHHHHHHHHH
Confidence 999999997654 4566789999999999999999999999999999999999999999999
Q ss_pred HHccCCHHHHHHHHHHHHHhc------CCCCCcEEEEEEcCCCcccc
Q 018392 315 LQQHGDVQLACEALAQAALDQ------HSQDNISIVIADLGYASVEL 355 (356)
Q Consensus 315 l~~~~~~~~~a~~l~~~A~~~------g~~DNiTvIvv~l~~~~~~~ 355 (356)
|.++.....+|+.|.+..++- .+.||+|||++.|.+...|+
T Consensus 463 l~~n~~ls~iceeL~D~CLAp~T~GDGTGCDNMT~ii~~Fkrk~~el 509 (542)
T KOG0699|consen 463 LAKNSSLSEICEELCDACLAPSTDGDGTGCDNMTVIITTFKRKSKEL 509 (542)
T ss_pred HhcCchHHHHHHHHHHhhcCCCCCCCCcCCCcceEEEEEeccchhhc
Confidence 999999999999999999874 25699999999998766543
No 7
>COG0631 PTC1 Serine/threonine protein phosphatase [Signal transduction mechanisms]
Probab=100.00 E-value=2e-43 Score=326.17 Aligned_cols=248 Identities=26% Similarity=0.380 Sum_probs=208.2
Q ss_pred CCCeeEEEEeccCC-CCCCCceEEEeeCCCCC-eEEEEEEcCCCChhHHHHHHHHHHHHHHHHHhcCccCCCCChHHHHH
Q 018392 56 VAGIRWGSVSLQGL-REEMEDGAVIQSDGLDG-FSFAAVFDGHGGVSTVKFLRDELYKECVAALQGGLLLSGKDFDAIKK 133 (356)
Q Consensus 56 ~~~~~~~~~s~~G~-r~~nED~~~~~~~~~~~-~~~~~V~DG~GG~~~a~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~ 133 (356)
...+.+...++.|. |.+|||++.+....... ..+++|||||||+.+++++++.+++.+.+.+......... ....+
T Consensus 5 ~~~~~~~~~s~~g~~R~~NeD~~~~~~~~~~~~~~l~~V~DG~GGh~~ge~aS~~~v~~l~~~~~~~~~~~~~--~~~~~ 82 (262)
T COG0631 5 ILSLKVAGLSDVGTVRKHNEDAFLIKPNENGNLLLLFAVADGMGGHAAGEVASKLAVEALARLFDETNFNSLN--ESLEE 82 (262)
T ss_pred cceeeeeeeccCCCccCCCCcceeeccccCCcceeEEEEEeCccchhHHHHHHHHHHHHHHHHHHhccccccc--hhHHH
Confidence 35667778888887 88899999987643111 5699999999999999999999999999988753211111 11789
Q ss_pred HHHHHHHHHHHHHHHHHHhccCcCCCCceEEEEEEeCCeEEEEEeccccEEEecCCceeecCCCCcCCCCCCCCHHHHHH
Q 018392 134 ALQEAFENVDMKLLNRLEMNAEEDESGATATVMFIGRDILFISHVGDCCVVLSRTGKADVLTNPHRPYGSGQVSLQEIRR 213 (356)
Q Consensus 134 ~l~~a~~~~~~~l~~~~~~~~~~~~~GsT~~~~~i~~~~l~ianvGDSra~l~r~g~~~~lt~dH~~~~~~~~~~~E~~R 213 (356)
.|.+++..+++.+............+|||++++++.++++|+||+||||+|++|+|+++|||.||++.+ ..+..+
T Consensus 83 ~l~~~~~~~n~~i~~~~~~~~~~~~mgtTl~~~~~~~~~l~~a~vGDSR~yl~~~~~~~~lT~DH~~~~-----~~~~~~ 157 (262)
T COG0631 83 LLKEAILKANEAIAEEGQLNEDVRGMGTTLVLLLIRGNKLYVANVGDSRAYLLRDGELKQLTEDHSLVN-----RLEQRG 157 (262)
T ss_pred HHHHHHHHHHHHHHHhhhcccccCCCceeEEEEEEECCeEEEEEccCCeEEEEcCCceEEeccCCcHHH-----HHHHhc
Confidence 999999999999998765556778999999999999999999999999999999999999999999975 566666
Q ss_pred HHHcCCEEeCCeeeceecccccccCcccccchhhhhhcccCCCccccchhcccccCCCcEEeeceEEEEEecCCCeEEEE
Q 018392 214 IREAGGWISNGRICGDIAVSRAFGDIRFKTKKNEMLKKGVNEGRWSEKFVSRVQLNKDLVIASPDIFQVSLGSDAEFVLL 293 (356)
Q Consensus 214 i~~~gg~v~~~rv~g~l~~sra~Gd~~~k~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~v~~~p~i~~~~l~~~~d~lvL 293 (356)
+...++....+|.+ .+|||||+.++ +.|++....+.++ ||+||
T Consensus 158 ~~~~~~~~~~~~~~---~ltralG~~~~---------------------------------~~p~~~~~~~~~~-d~llL 200 (262)
T COG0631 158 IITPEEARSHPRRN---ALTRALGDFDL---------------------------------LEPDITELELEPG-DFLLL 200 (262)
T ss_pred CCCHHHHHhCccch---hhhhhcCCCcc---------------------------------cceeEEEEEcCCC-CEEEE
Confidence 55555555555554 78999998652 5699999999999 99999
Q ss_pred EcCCCcCCCChHHHHHHHHHHHHccCCHHHHHHHHHHHHHhcCCCCCcEEEEEEcCCC
Q 018392 294 ASDGLWDYMNSSDAVKFVRNQLQQHGDVQLACEALAQAALDQHSQDNISIVIADLGYA 351 (356)
Q Consensus 294 ~SDGl~d~l~~~ei~~~v~~~l~~~~~~~~~a~~l~~~A~~~g~~DNiTvIvv~l~~~ 351 (356)
|||||||.++++++++++. ...+++++++.|++.|+++++.||+|+|+|++...
T Consensus 201 ~SDGl~d~v~~~~i~~il~----~~~~~~~~~~~li~~a~~~g~~DNiT~ilv~~~~~ 254 (262)
T COG0631 201 CSDGLWDVVSDDEIVDILK----NSETPQEAADKLIELALEGGGPDNITVVLVRLNGE 254 (262)
T ss_pred ECCCCccCcCHHHHHHHHh----cCCCHHHHHHHHHHHHHhcCCCCceEEEEEEeecc
Confidence 9999999999999999995 46899999999999999999999999999998754
No 8
>KOG0700 consensus Protein phosphatase 2C/pyruvate dehydrogenase (lipoamide) phosphatase [Signal transduction mechanisms]
Probab=100.00 E-value=1.7e-43 Score=330.63 Aligned_cols=255 Identities=30% Similarity=0.432 Sum_probs=210.9
Q ss_pred CCCCCceEEEeeCCCCCeEEEEEEcCCCChhHHHHHHHHHHHHHHHHHhcCccCC------C------------------
Q 018392 70 REEMEDGAVIQSDGLDGFSFAAVFDGHGGVSTVKFLRDELYKECVAALQGGLLLS------G------------------ 125 (356)
Q Consensus 70 r~~nED~~~~~~~~~~~~~~~~V~DG~GG~~~a~~~~~~l~~~~~~~l~~~~~~~------~------------------ 125 (356)
.+..||++-+.....+++.|+||||||||..+++|++++|+.++..+|+...... +
T Consensus 82 ~~~~edrv~~~~s~~~~~~fvGIyDGhgGp~as~~v~~~L~~~v~~~L~~~~~~~~~~f~~e~~~~~~~~~~~~~~~~~~ 161 (390)
T KOG0700|consen 82 GKAEEDRVSVAVSEENGWLFVGIYDGHGGPDASRFLSDHLYPYVARELQGLLWQDEERFPSEYKSEELEHLLVYWKQLSS 161 (390)
T ss_pred CCcccCcceeeeeccCCeEEEEEecCCCCccHHHHHHHHHHHHHHHHhhhhhhhhccccccccccchhhhhhhhhhcccc
Confidence 3456899877666678899999999999999999999999999997776522111 1
Q ss_pred --CChHHHHHHHHHHHHHHHHHHHHHHHh----ccCcCCCCceEEEEEEeCCeEEEEEeccccEEEec---CC---ceee
Q 018392 126 --KDFDAIKKALQEAFENVDMKLLNRLEM----NAEEDESGATATVMFIGRDILFISHVGDCCVVLSR---TG---KADV 193 (356)
Q Consensus 126 --~~~~~~~~~l~~a~~~~~~~l~~~~~~----~~~~~~~GsT~~~~~i~~~~l~ianvGDSra~l~r---~g---~~~~ 193 (356)
.....+.++|.+||+++++.|+..... .+....+|+|+++.++.++.|||||+|||||+|.+ +| .++|
T Consensus 162 ~~~~~~~v~~al~~Af~~tee~fl~~v~~~~~~~p~lA~~GSC~Lv~~i~~~~LyVaN~GDSRAVLG~~~~~~~~~~A~q 241 (390)
T KOG0700|consen 162 ADQRHGDVLEALSKAFEATEEDFLEMVDKQLQENPELALVGSCCLVGLIKGGDLYVANVGDSRAVLGVVENNGSWLVAVQ 241 (390)
T ss_pred cCccchhHHHHHHHHHHHHHHHHHHHHHHhhccchhhhhhcceEEEEEEeCCeEEEEecCcchhhhceecCCCCeEEEEe
Confidence 114678999999999999999876533 35667899999999999999999999999999964 33 4789
Q ss_pred cCCCCcCCCCCCCCHHHHHHHHHcCC----EEeC--CeeeceecccccccCcccccchhhhhhcccCCCccccchhcccc
Q 018392 194 LTNPHRPYGSGQVSLQEIRRIREAGG----WISN--GRICGDIAVSRAFGDIRFKTKKNEMLKKGVNEGRWSEKFVSRVQ 267 (356)
Q Consensus 194 lt~dH~~~~~~~~~~~E~~Ri~~~gg----~v~~--~rv~g~l~~sra~Gd~~~k~~~~~~~~~g~~~~~~~~~~~~~~~ 267 (356)
||.||+.++ ++|+.||+..+- .|.. +||+|.|.+||||||.++|.++-+... -.++|+....
T Consensus 242 LS~dHn~~n-----e~Ev~Rir~eHPdd~~~vv~~~~RvkG~L~vsRAfGd~~lK~~~~n~e~-------l~~~fr~~~~ 309 (390)
T KOG0700|consen 242 LSTDHNASN-----EDEVRRIRSEHPDDPHIVVNKHWRVKGILQVSRAFGDGYLKWPEFNQEP-------LLEKFRIPYI 309 (390)
T ss_pred cChhhcccc-----HHHHHHHHHhCCCCcceEeeccceeeEEEEeeeeccceeecchhhccch-------hHhhcCCCCC
Confidence 999999988 999999999883 4444 599999999999999999965433110 1136888889
Q ss_pred cCCCcEEeeceEEEEEecCCCeEEEEEcCCCcCCCChHHHHHHHHHHHHccCCHHHHHHHHHHHHHhcC
Q 018392 268 LNKDLVIASPDIFQVSLGSDAEFVLLASDGLWDYMNSSDAVKFVRNQLQQHGDVQLACEALAQAALDQH 336 (356)
Q Consensus 268 ~~~~~v~~~p~i~~~~l~~~~d~lvL~SDGl~d~l~~~ei~~~v~~~l~~~~~~~~~a~~l~~~A~~~g 336 (356)
.++|+++++|+++.++|.+.|.|+||+|||||++|+++|++.+|.+.+....+-+.+|+.|++.|+.+.
T Consensus 310 ~t~PyltaeP~i~~HrL~p~DkFLIlASDGLwE~lsNeeaV~lV~~~i~~~~pd~~~A~hLIr~aL~~a 378 (390)
T KOG0700|consen 310 GTPPYLTAEPSITHHKLTPNDKFLILASDGLWEYLSNEEAVSLVHEFISGKFPDGNPATHLIRHALGRA 378 (390)
T ss_pred CCCCceeccceEEEEEcCCCCeEEEEeccchhhhcChHHHHHHHHHhhccCCCCCCHHHHHHHHHHhhh
Confidence 999999999999999999999999999999999999999999999877654444678888888887654
No 9
>cd00143 PP2Cc Serine/threonine phosphatases, family 2C, catalytic domain; The protein architecture and deduced catalytic mechanism of PP2C phosphatases are similar to the PP1, PP2A, PP2B family of protein Ser/Thr phosphatases, with which PP2C shares no sequence similarity.
Probab=100.00 E-value=1.8e-39 Score=297.69 Aligned_cols=251 Identities=38% Similarity=0.588 Sum_probs=217.3
Q ss_pred eEEEEeccCCCCCCCceEEEeeCCC-CCeEEEEEEcCCCChhHHHHHHHHHHHHHHHHHhcCccCCCCChHHHHHHHHHH
Q 018392 60 RWGSVSLQGLREEMEDGAVIQSDGL-DGFSFAAVFDGHGGVSTVKFLRDELYKECVAALQGGLLLSGKDFDAIKKALQEA 138 (356)
Q Consensus 60 ~~~~~s~~G~r~~nED~~~~~~~~~-~~~~~~~V~DG~GG~~~a~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~l~~a 138 (356)
.++..+.+|.|+.|||++.+..... .++.+|+|||||||+..++++++.+.+.+.+.+..... .....+...|.++
T Consensus 2 ~~~~~~~~g~r~~neD~~~~~~~~~~~~~~~~~V~DG~Gg~~~~~~as~~~~~~l~~~~~~~~~---~~~~~~~~~l~~~ 78 (254)
T cd00143 2 SAGVSDKGGDRKTNEDAVVIKPNLNNEDGGLFGVFDGHGGHAAGEFASKLLVEELLEELEETLT---LSEEDIEEALRKA 78 (254)
T ss_pred ceeeecCCCCCCCCcceEEEeccCCCCCcEEEEEEcCCChHHHHHHHHHHHHHHHHHHHhhccc---cchHHHHHHHHHH
Confidence 4567788888999999999865431 25679999999999999999999999999887764321 2356788899999
Q ss_pred HHHHHHHHHHHHHhccCcCCCCceEEEEEEeCCeEEEEEeccccEEEecCCceeecCCCCcCCCCCCCCHHHHHHHHHcC
Q 018392 139 FENVDMKLLNRLEMNAEEDESGATATVMFIGRDILFISHVGDCCVVLSRTGKADVLTNPHRPYGSGQVSLQEIRRIREAG 218 (356)
Q Consensus 139 ~~~~~~~l~~~~~~~~~~~~~GsT~~~~~i~~~~l~ianvGDSra~l~r~g~~~~lt~dH~~~~~~~~~~~E~~Ri~~~g 218 (356)
|+.+++.+............+|||++++++.++.++++|+||||+|++++++++++|.||++.+ +.+..||...+
T Consensus 79 ~~~~~~~l~~~~~~~~~~~~~gtT~~~~~~~~~~l~~~~vGDsr~~~~~~~~~~~lt~dh~~~~-----~~~~~~i~~~~ 153 (254)
T cd00143 79 FLRADEEILEEAQDEPDDARSGTTAVVALIRGNKLYVANVGDSRAVLCRNGEAVQLTKDHKPVN-----EEERERIEKAG 153 (254)
T ss_pred HHHHHHHHHHhhhhccCCCCCCCcEEEEEEECCEEEEEEecCcEEEEEcCCceeEcCCCCCCcC-----hHHHHHHHHcC
Confidence 9999999988755445567899999999999999999999999999999999999999999975 68999999999
Q ss_pred CEEeCCeeeceecccccccCcccccchhhhhhcccCCCccccchhcccccCCCcEEeeceEEEEEe-cCCCeEEEEEcCC
Q 018392 219 GWISNGRICGDIAVSRAFGDIRFKTKKNEMLKKGVNEGRWSEKFVSRVQLNKDLVIASPDIFQVSL-GSDAEFVLLASDG 297 (356)
Q Consensus 219 g~v~~~rv~g~l~~sra~Gd~~~k~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~v~~~p~i~~~~l-~~~~d~lvL~SDG 297 (356)
+++...+..+...+||+||+..+| +++...|++..+++ .++ ++|||||||
T Consensus 154 ~~~~~~~~~~~~~~t~~lG~~~~~----------------------------~~~~~~~~~~~~~l~~~~-d~ill~SDG 204 (254)
T cd00143 154 GRVSNGRVPGVLAVTRALGDFDLK----------------------------PGVSAEPDVTVVKLTEDD-DFLILASDG 204 (254)
T ss_pred CcEEeCEEcCceeeccccCCcccc----------------------------CCEEcCCeEEEEEeCCCC-cEEEEECCC
Confidence 998888888999999999998776 45578899999999 777 999999999
Q ss_pred CcCCCChHHHHHHHHHHHHccCCHHHHHHHHHHHHHhcCCCCCcEEEEEEc
Q 018392 298 LWDYMNSSDAVKFVRNQLQQHGDVQLACEALAQAALDQHSQDNISIVIADL 348 (356)
Q Consensus 298 l~d~l~~~ei~~~v~~~l~~~~~~~~~a~~l~~~A~~~g~~DNiTvIvv~l 348 (356)
|||+++++++.+++.....+ .+++++|+.|++.|..+++.||+|+|++.+
T Consensus 205 ~~~~l~~~~i~~~~~~~~~~-~~~~~~a~~l~~~a~~~~~~Dn~t~i~~~~ 254 (254)
T cd00143 205 LWDVLSNQEAVDIVRSELAK-EDLQEAAQELVDLALRRGSHDNITVVVVRL 254 (254)
T ss_pred CeeccChHHHHHHHHHHhcc-cCHHHHHHHHHHHHHhCCCCCCEEEEEEeC
Confidence 99999999999998642111 279999999999999999999999999975
No 10
>smart00332 PP2Cc Serine/threonine phosphatases, family 2C, catalytic domain. The protein architecture and deduced catalytic mechanism of PP2C phosphatases are similar to the PP1, PP2A, PP2B family of protein Ser/Thr phosphatases, with which PP2C shares no sequence similarity.
Probab=100.00 E-value=6.1e-39 Score=294.88 Aligned_cols=250 Identities=41% Similarity=0.661 Sum_probs=216.2
Q ss_pred CeeEEEEeccCCCCCCCceEEEeeCCCCCeEEEEEEcCCCChhHHHHHHHHHHHHHHHHHhcCccCCCCChHHHHHHHHH
Q 018392 58 GIRWGSVSLQGLREEMEDGAVIQSDGLDGFSFAAVFDGHGGVSTVKFLRDELYKECVAALQGGLLLSGKDFDAIKKALQE 137 (356)
Q Consensus 58 ~~~~~~~s~~G~r~~nED~~~~~~~~~~~~~~~~V~DG~GG~~~a~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~l~~ 137 (356)
.+.++..+.+|.|..|||++++......+..+++|||||||..+++++++.+.+.+.+..... ......+.+.|.+
T Consensus 5 ~~~~~~~~~~~~r~~neD~~~~~~~~~~~~~~~~v~DG~gg~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~l~~ 80 (255)
T smart00332 5 GLRYGLSSMQGVRKPMEDAHVITPDLSDSGAFFGVFDGHGGSEAAKFLSKNLPEILAEELIKH----KDELEDVEEALRK 80 (255)
T ss_pred ceeEEEecCCCCCCCCcceEEEeccCCCCeEEEEEEeCCCcHHHHHHHHHHHHHHHHHhHhhc----ccchhHHHHHHHH
Confidence 466677788889999999998866433567799999999999999999999998877654321 1122468889999
Q ss_pred HHHHHHHHHHHHHHhccCcCCCCceEEEEEEeCCeEEEEEeccccEEEecCCceeecCCCCcCCCCCCCCHHHHHHHHHc
Q 018392 138 AFENVDMKLLNRLEMNAEEDESGATATVMFIGRDILFISHVGDCCVVLSRTGKADVLTNPHRPYGSGQVSLQEIRRIREA 217 (356)
Q Consensus 138 a~~~~~~~l~~~~~~~~~~~~~GsT~~~~~i~~~~l~ianvGDSra~l~r~g~~~~lt~dH~~~~~~~~~~~E~~Ri~~~ 217 (356)
++..+++.+............+|||++++++.++.++++|+||||+|++|++++.+||.||++.+ ..|..||...
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~gtT~~~~~~~~~~l~~~~vGDsr~y~~~~~~~~~lt~dh~~~~-----~~~~~~i~~~ 155 (255)
T smart00332 81 AFLKTDEEILEELESLEEDAGSGSTAVVALISGNKLYVANVGDSRAVLCRNGKAVQLTEDHKPSN-----EDERARIEAA 155 (255)
T ss_pred HHHHHHHHHHHhhhhccCCCCCCccEEEEEEECCEEEEEeccCceEEEEeCCceeEcCCCCCCcC-----HHHHHHHHHc
Confidence 99999999988765555556799999999999999999999999999999999999999999976 7899999999
Q ss_pred CCEEeCCeeeceecccccccCcccccchhhhhhcccCCCccccchhcccccCCCcEEeeceEEEEEe-cCCCeEEEEEcC
Q 018392 218 GGWISNGRICGDIAVSRAFGDIRFKTKKNEMLKKGVNEGRWSEKFVSRVQLNKDLVIASPDIFQVSL-GSDAEFVLLASD 296 (356)
Q Consensus 218 gg~v~~~rv~g~l~~sra~Gd~~~k~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~v~~~p~i~~~~l-~~~~d~lvL~SD 296 (356)
++.+..++..+...+||++|+..+| +.+...|++...++ .++ ++||||||
T Consensus 156 ~~~~~~~~~~~~~~lt~~~g~~~~~----------------------------~~i~~~p~~~~~~~~~~~-d~ill~SD 206 (255)
T smart00332 156 GGFVINGRVNGVLALSRAIGDFFLK----------------------------PYVSAEPDVTVVELTEKD-DFLILASD 206 (255)
T ss_pred CCEEECCeECCeEecccccCCHhhc----------------------------CCeEeeeEEEEEEecCCC-cEEEEECC
Confidence 9999999999999999999998776 67789999999996 777 99999999
Q ss_pred CCcCCCChHHHHHHHHHHHHccCCHHHHHHHHHHHHHhcCCCCCcEEEEE
Q 018392 297 GLWDYMNSSDAVKFVRNQLQQHGDVQLACEALAQAALDQHSQDNISIVIA 346 (356)
Q Consensus 297 Gl~d~l~~~ei~~~v~~~l~~~~~~~~~a~~l~~~A~~~g~~DNiTvIvv 346 (356)
||||+++++++.+++.+.... .+++++|+.|++.|..++..||+|+|||
T Consensus 207 Gv~~~l~~~~i~~~~~~~~~~-~~~~~~~~~l~~~a~~~~~~Dn~T~ivv 255 (255)
T smart00332 207 GLWDVLSNQEVVDIVRKHLSK-SDPEEAAKRLIDLALARGSKDNITVIVV 255 (255)
T ss_pred ccccCCCHHHHHHHHHHHhhc-CCHHHHHHHHHHHHHHcCCCCCeEEEEC
Confidence 999999999999999754322 3789999999999999999999999985
No 11
>PRK14559 putative protein serine/threonine phosphatase; Provisional
Probab=100.00 E-value=9.2e-38 Score=316.03 Aligned_cols=247 Identities=20% Similarity=0.222 Sum_probs=186.4
Q ss_pred CeeEEEEeccCC-CCCCCceEEEeeCC----------CCCeEEEEEEcCCCChhHHHHHHHHHHHHHHHHHhcCccCCCC
Q 018392 58 GIRWGSVSLQGL-REEMEDGAVIQSDG----------LDGFSFAAVFDGHGGVSTVKFLRDELYKECVAALQGGLLLSGK 126 (356)
Q Consensus 58 ~~~~~~~s~~G~-r~~nED~~~~~~~~----------~~~~~~~~V~DG~GG~~~a~~~~~~l~~~~~~~l~~~~~~~~~ 126 (356)
.+.++..|++|. |++|||++.+.... ..+..+|+|||||||+.+++.|++.+.+.+.+.+.... ..
T Consensus 374 ~l~~a~~Td~G~~R~~NEDa~~i~~~~~~~~~~~~~~~~~~~L~aVaDGmGGh~~GevAS~lAv~~L~~~~~~~~--~~- 450 (645)
T PRK14559 374 SLEDAGRTDVGRQRHHNEDYFGINTRIQKLENPHGRIVQARGLYILCDGMGGHAAGEVASALAVETLQQYFQQHW--QD- 450 (645)
T ss_pred eEEEEEECCCCCCCcccCCcccccccccccccccccccccceEEEEEeCCCCchhHHHHHHHHHHHHHHHHHhhh--cc-
Confidence 477889999997 99999998765321 01346899999999999888888888887776654321 11
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHhcc--CcCCCCceEEEEEEeCCeEEEEEeccccEEEe-cCCceeecCCCCcCCCC
Q 018392 127 DFDAIKKALQEAFENVDMKLLNRLEMNA--EEDESGATATVMFIGRDILFISHVGDCCVVLS-RTGKADVLTNPHRPYGS 203 (356)
Q Consensus 127 ~~~~~~~~l~~a~~~~~~~l~~~~~~~~--~~~~~GsT~~~~~i~~~~l~ianvGDSra~l~-r~g~~~~lt~dH~~~~~ 203 (356)
. ....+.|.++|..+|+.|........ ....+|||++++++.++.+|++||||||+|++ |+|+++|||+||++.
T Consensus 451 ~-~~~~~~L~~ai~~AN~~I~~~~~~~~~~~~~~MGTTlv~alI~~~~l~ianVGDSRaYli~r~g~l~QLT~DHs~~-- 527 (645)
T PRK14559 451 E-LPDEETIREAIYLANEAIYDLNQQNARSGSGRMGTTLVMALVQDTQVAVAHVGDSRLYRVTRKGGLEQLTVDHEVG-- 527 (645)
T ss_pred c-ccHHHHHHHHHHHHHHHHHHHhhhcccccCCCCCceeeeEEEECCEEEEEEecCceEEEEecCCeEEEeCCCCCHH--
Confidence 1 12356799999999999987644332 44579999999999999999999999999988 578999999999983
Q ss_pred CCCCHHHHHHHHHcCCE--EeCCeeeceecccccccCcccccchhhhhhcccCCCccccchhcccccCCCcEEeeceEEE
Q 018392 204 GQVSLQEIRRIREAGGW--ISNGRICGDIAVSRAFGDIRFKTKKNEMLKKGVNEGRWSEKFVSRVQLNKDLVIASPDIFQ 281 (356)
Q Consensus 204 ~~~~~~E~~Ri~~~gg~--v~~~rv~g~l~~sra~Gd~~~k~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~v~~~p~i~~ 281 (356)
..++ +.|-. ...+| .+...+|||||+...+ ..+|++..
T Consensus 528 ----~~lv----~~Gi~~~~a~~~-p~~~~LTrALG~~~~~-------------------------------~l~Pdi~~ 567 (645)
T PRK14559 528 ----QREI----QRGVEPQIAYAR-PDAYQLTQALGPRDNS-------------------------------AIQPDIQF 567 (645)
T ss_pred ----HHHH----HhCCCHHHHhcC-cccceeeeccCCCCCC-------------------------------cccceEEE
Confidence 2222 22310 00122 2346789999985433 35799999
Q ss_pred EEecCCCeEEEEEcCCCcCC-CChHHHHHHHHHHHHccCCHHHHHHHHHHHHHhcCCCCCcEEEEEEcCCC
Q 018392 282 VSLGSDAEFVLLASDGLWDY-MNSSDAVKFVRNQLQQHGDVQLACEALAQAALDQHSQDNISIVIADLGYA 351 (356)
Q Consensus 282 ~~l~~~~d~lvL~SDGl~d~-l~~~ei~~~v~~~l~~~~~~~~~a~~l~~~A~~~g~~DNiTvIvv~l~~~ 351 (356)
+.+.++ |+||||||||||+ +-+....+.+...+....+++++++.|++.|+++|++||||+|||++...
T Consensus 568 ~~L~~g-D~lLLCSDGL~D~~~ve~~~~~~l~~il~~~~~l~~aa~~Li~~Al~~gg~DNITvIvV~l~~~ 637 (645)
T PRK14559 568 LEIEED-TLLLLCSDGLSDNDLLETHWQTHLLPLLSSSANLDQGLNKLIDLANQYNGHDNITAILVRLKVR 637 (645)
T ss_pred EEcCCC-CEEEEECCCCCCCcccchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCCcEEEEEEEeccC
Confidence 999987 9999999999995 33333334444555667799999999999999999999999999999743
No 12
>KOG1323 consensus Serine/threonine phosphatase [Signal transduction mechanisms]
Probab=99.98 E-value=4.9e-31 Score=239.26 Aligned_cols=238 Identities=26% Similarity=0.390 Sum_probs=189.9
Q ss_pred CeEEEEEEcCCCChhHHHHHHHHHHHHHHHHHhcCccC--------------------------------CCCChHHHHH
Q 018392 86 GFSFAAVFDGHGGVSTVKFLRDELYKECVAALQGGLLL--------------------------------SGKDFDAIKK 133 (356)
Q Consensus 86 ~~~~~~V~DG~GG~~~a~~~~~~l~~~~~~~l~~~~~~--------------------------------~~~~~~~~~~ 133 (356)
...+|.+||||.|..++-.+++.+.+.+...+++-... .-....-+..
T Consensus 143 ~~~~~slfdghags~~avvAsrll~~hI~~ql~~vvd~i~~~~~~~~~~~g~~~~~s~~s~~~~~~~~ek~Ir~E~LViG 222 (493)
T KOG1323|consen 143 DGALFSLFDGHAGSAVAVVASRLLHRHIKEQLCEVVDTILHMDRHENLNFGKHRSESSYSMSEMSREDEKRIRHEHLVIG 222 (493)
T ss_pred cceeeeeecCCCcchHHHHHHHHHHHhhhHHHHHHHHHHhhhccccccccccccccCCcccccccchhhccCchHHhhHH
Confidence 35699999999999999999998888777666520000 0011234578
Q ss_pred HHHHHHHHHHHHHHHHHHhccCcCCCCceEEEEEEeCCeEEEEEeccccEEEecCCceeecCCCCcCCCCCCCCHHHHHH
Q 018392 134 ALQEAFENVDMKLLNRLEMNAEEDESGATATVMFIGRDILFISHVGDCCVVLSRTGKADVLTNPHRPYGSGQVSLQEIRR 213 (356)
Q Consensus 134 ~l~~a~~~~~~~l~~~~~~~~~~~~~GsT~~~~~i~~~~l~ianvGDSra~l~r~g~~~~lt~dH~~~~~~~~~~~E~~R 213 (356)
+|+.||++.|++|.+.. ..-...+|||+++++.--++||++|.||||++++|++++++|+++.+| +.|++|
T Consensus 223 AlEsAFqemDeqiarer--~~~~~~GGCtalvvi~llGKlYvaNAGDsRAIlVrndeirplS~efTP-------etERqR 293 (493)
T KOG1323|consen 223 ALESAFQEMDEQIARER--QVWRLPGGCTALVVIVLLGKLYVANAGDSRAILVRNDEIRPLSKEFTP-------ETERQR 293 (493)
T ss_pred HHHHHHHHHHHHHHHHH--HhhcCCCCceEEEeeeeccceEEccCCCceEEEEecCCeeecccccCc-------HHHHHH
Confidence 99999999999998743 344567899999999999999999999999999999999999999999 799999
Q ss_pred HHHcC-------------------------------------CEEe------------------CCeeeceecccccccC
Q 018392 214 IREAG-------------------------------------GWIS------------------NGRICGDIAVSRAFGD 238 (356)
Q Consensus 214 i~~~g-------------------------------------g~v~------------------~~rv~g~l~~sra~Gd 238 (356)
|+..+ ||.. +.|+.+.+.+||.|||
T Consensus 294 lQ~Laf~~PeLlgneFtrLEfprRl~~~dLgqrvLyRD~~MtGWayKtve~~DLr~pLI~gegrkaRll~TigVsRGlGD 373 (493)
T KOG1323|consen 294 LQELAFRNPELLGNEFTRLEFPRRLTIKDLGQRVLYRDWNMTGWAYKTVEEEDLRFPLISGEGRKARLLATIGVSRGLGD 373 (493)
T ss_pred HHHHhhcChHhhcccccceecccccChhhhcceeeeeccccccceeehhhhhcCCcceecccchhhhhhhhheeccccCc
Confidence 98752 2221 1267789999999999
Q ss_pred cccccchhhhhhcccCCCccccchhcccccCCCcEEeeceEEEEEecC----CCeEEEEEcCCCcCCCChHHHHHHHHHH
Q 018392 239 IRFKTKKNEMLKKGVNEGRWSEKFVSRVQLNKDLVIASPDIFQVSLGS----DAEFVLLASDGLWDYMNSSDAVKFVRNQ 314 (356)
Q Consensus 239 ~~~k~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~v~~~p~i~~~~l~~----~~d~lvL~SDGl~d~l~~~ei~~~v~~~ 314 (356)
..+| ...++..-+|++++.|+++++.|.. .||++||+||||||.++++|+..+|+.+
T Consensus 374 H~Lk-------------------v~dsnl~iKPFLssvPeV~V~dl~q~e~~~DdVvilatDGLWDVlSneeva~~Vrs~ 434 (493)
T KOG1323|consen 374 HHLK-------------------VVDSNLSIKPFLSSVPEVRVYDLRQYEHLTDDVVILATDGLWDVLSNEEVALIVRSF 434 (493)
T ss_pred ceee-------------------eecCCcccchhhhcCCeeEEEehhhhccCCCcEEEEecCchhhhcccHHHHHHHHHh
Confidence 9988 3444556678999999999998864 2589999999999999999999999998
Q ss_pred HHccC--CHH---HHHHHHHHHHHh-------------cCCCCCcEEEEEEcCCC
Q 018392 315 LQQHG--DVQ---LACEALAQAALD-------------QHSQDNISIVIADLGYA 351 (356)
Q Consensus 315 l~~~~--~~~---~~a~~l~~~A~~-------------~g~~DNiTvIvv~l~~~ 351 (356)
+.... ||. .+|+.|+..|.. .|+.|||||.||.+...
T Consensus 435 L~~~dp~Dp~RYt~aaqdlva~arg~~k~rgWr~~n~~lgSgDDIsVfVIPL~~~ 489 (493)
T KOG1323|consen 435 LPSTDPADPSRYTQAAQDLVAAARGQQKDRGWRMNNGGLGSGDDISVFVIPLKYC 489 (493)
T ss_pred cCCCCCCChhHHHHHHHHHHHHhcCccCCCceeccCCCcCCCCceEEEEEeccCC
Confidence 86553 443 567888887743 25779999999999753
No 13
>KOG1379 consensus Serine/threonine protein phosphatase [Signal transduction mechanisms]
Probab=99.97 E-value=5e-29 Score=226.30 Aligned_cols=206 Identities=19% Similarity=0.298 Sum_probs=159.9
Q ss_pred CCCceEEEeeCCCCCeEEEEEEcCCCChhH----HHHHHHHHHHHHHHHHhcCccCCCCChHHHHHHHHHHHHHHHHHHH
Q 018392 72 EMEDGAVIQSDGLDGFSFAAVFDGHGGVST----VKFLRDELYKECVAALQGGLLLSGKDFDAIKKALQEAFENVDMKLL 147 (356)
Q Consensus 72 ~nED~~~~~~~~~~~~~~~~V~DG~GG~~~----a~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~l~~a~~~~~~~l~ 147 (356)
..||+|++..+ ....+.|||||+|||.- ....+++|.+.+.+..+. ......++...|.+|+.++
T Consensus 90 ~GEDa~Fvss~--~~~~v~GVADGVGGWa~~GiDpg~fS~eLM~~ce~~v~~----~~~~~~~P~~lL~~ay~~l----- 158 (330)
T KOG1379|consen 90 GGEDAWFVSSN--PHAIVMGVADGVGGWAEYGIDPGAFSRELMSNCERLVQN----SDFNPSDPVNLLEKAYAEL----- 158 (330)
T ss_pred CCCcceeeccC--cccceEEEccccchHhhcCcCHHHHHHHHHHHHHHHhcc----cccCCCChHHHHHHHHHHH-----
Confidence 48999999765 33459999999999983 233455566666666553 4455668899999999888
Q ss_pred HHHHhccCcCCCCceEEEEEEe--CCeEEEEEeccccEEEecCCceeecCCCCcCCCCCCCCHHHHHHHHHcCCEEeCCe
Q 018392 148 NRLEMNAEEDESGATATVMFIG--RDILFISHVGDCCVVLSRTGKADVLTNPHRPYGSGQVSLQEIRRIREAGGWISNGR 225 (356)
Q Consensus 148 ~~~~~~~~~~~~GsT~~~~~i~--~~~l~ianvGDSra~l~r~g~~~~lt~dH~~~~~~~~~~~E~~Ri~~~gg~v~~~r 225 (356)
.......-++||++++.++ +++||+||+|||.+.++|+|++..-|..++++.
T Consensus 159 ---~~~~~~~vGSSTAcI~~l~~~~~~Lh~aNLGDSGF~VvR~G~vv~~S~~Q~H~F----------------------- 212 (330)
T KOG1379|consen 159 ---KSQKVPIVGSSTACILALDRENGKLHTANLGDSGFLVVREGKVVFRSPEQQHYF----------------------- 212 (330)
T ss_pred ---hhcCCCCCCcceeeeeeeecCCCeEEEeeccCcceEEEECCEEEEcCchheecc-----------------------
Confidence 3344455578899999998 889999999999999999999999999998853
Q ss_pred eeceecccccccCcccccchhhhhhcccCCCccccchhcccccCC--CcEE---eeceEEEEEecCCCeEEEEEcCCCcC
Q 018392 226 ICGDIAVSRAFGDIRFKTKKNEMLKKGVNEGRWSEKFVSRVQLNK--DLVI---ASPDIFQVSLGSDAEFVLLASDGLWD 300 (356)
Q Consensus 226 v~g~l~~sra~Gd~~~k~~~~~~~~~g~~~~~~~~~~~~~~~~~~--~~v~---~~p~i~~~~l~~~~d~lvL~SDGl~d 300 (356)
+.+|+...+|.+ .++. -..+.+.+++++| |+|||+||||||
T Consensus 213 ---------------------------------N~PyQLs~~p~~~~~~~~d~p~~ad~~~~~v~~G-DvIilATDGlfD 258 (330)
T KOG1379|consen 213 ---------------------------------NTPYQLSSPPEGYSSYISDVPDSADVTSFDVQKG-DVIILATDGLFD 258 (330)
T ss_pred ---------------------------------CCceeeccCCccccccccCCccccceEEEeccCC-CEEEEecccccc
Confidence 333444333321 1111 2357889999999 999999999999
Q ss_pred CCChHHHHHHHHHHHH-ccCCHHHHHHHHHHHHHhc-----------------------CCCCCcEEEEEEc
Q 018392 301 YMNSSDAVKFVRNQLQ-QHGDVQLACEALAQAALDQ-----------------------HSQDNISIVIADL 348 (356)
Q Consensus 301 ~l~~~ei~~~v~~~l~-~~~~~~~~a~~l~~~A~~~-----------------------g~~DNiTvIvv~l 348 (356)
+|.+++|++++..... ...++|..|+.|++.|.+. |..||||+||..+
T Consensus 259 Nl~e~~Il~il~~~~~~~~~~lq~~A~~ia~~Ar~ls~d~~~~SPFA~~Ar~~g~~~~gGK~DdITvvls~v 330 (330)
T KOG1379|consen 259 NLPEKEILSILKGLDARGNLDLQVTAQKIAEKARELSRDPKFQSPFAQAAREHGFKAYGGKPDDITVVLSSV 330 (330)
T ss_pred cccHHHHHHHHHHhhccccccHHHHHHHHHHHHHHhccCcCcCChHHHHHHHhCcccCCCCcccEEEEEecC
Confidence 9999999999987766 5678999999999999763 4579999999753
No 14
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.89 E-value=3e-22 Score=203.37 Aligned_cols=254 Identities=23% Similarity=0.350 Sum_probs=204.0
Q ss_pred CCCCCCCCCCeeEEEEeccCCCCCCCceEEEeeC-CCCCeEEEEEEcCCCChhHHHHHHHHHHHHHHHHHhcCccCCCCC
Q 018392 49 APSSLSGVAGIRWGSVSLQGLREEMEDGAVIQSD-GLDGFSFAAVFDGHGGVSTVKFLRDELYKECVAALQGGLLLSGKD 127 (356)
Q Consensus 49 ~~~~~~~~~~~~~~~~s~~G~r~~nED~~~~~~~-~~~~~~~~~V~DG~GG~~~a~~~~~~l~~~~~~~l~~~~~~~~~~ 127 (356)
.|+..--...+.+|++-..|.|..+--+...... ..+....||++||-+......++...+..++.+.++.. ..+
T Consensus 512 ~~d~~~n~~~~t~Gv~~~~gqrnk~c~~~~~v~nf~~~~~a~~g~~dgs~n~~v~~~vq~~ma~~L~eev~~~----~~e 587 (1081)
T KOG0618|consen 512 TPDGNVNAFLWTYGVAGVSGQRNKVCSRAVWVENFFLNPQATFGCFDGSRNSRVLSLVQDTMASYLAEEVQLY----GNE 587 (1081)
T ss_pred CCccccceeheeeccchhcccccchhhhhhhhhhcccCCcceEEEEcCCCchhHHHHHHHHHHHHHHHHHHhc----cCh
Confidence 3333333455778888888887664433322222 13334699999999999999999999999999888742 111
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhccCcCCCCceEEEEEEeC--------CeEEEEEeccccEEEecCCceeecCCCCc
Q 018392 128 FDAIKKALQEAFENVDMKLLNRLEMNAEEDESGATATVMFIGR--------DILFISHVGDCCVVLSRTGKADVLTNPHR 199 (356)
Q Consensus 128 ~~~~~~~l~~a~~~~~~~l~~~~~~~~~~~~~GsT~~~~~i~~--------~~l~ianvGDSra~l~r~g~~~~lt~dH~ 199 (356)
.+-|+++|...++++-.. ....|..++.+.+.. .++++||+|+|.++++++|+..++|+-..
T Consensus 588 ----t~~mr~~fl~~~rklg~~------g~~lg~~~~~~~i~~d~~~~asS~~l~~Anvg~c~avls~ng~~~p~t~~~~ 657 (1081)
T KOG0618|consen 588 ----TEQMRNTFLRLNRKLGEE------GQVLGGSVVLCQIVEDSLSPASSKTLFAANVGTCMAVLSRNGKPLPTTRSPM 657 (1081)
T ss_pred ----HHHHHHHHHHHhhhhhhh------hccccchhhheeecccccCcccchhhhHhhhccchhhhhhcCCcCccccccc
Confidence 223999999999888432 223455555555543 38899999999999999999999888774
Q ss_pred CCCCCCCCHHHHHHHHHcCCEEe-CCeeeceecccccccCcccccchhhhhhcccCCCccccchhcccccCCCcEEeece
Q 018392 200 PYGSGQVSLQEIRRIREAGGWIS-NGRICGDIAVSRAFGDIRFKTKKNEMLKKGVNEGRWSEKFVSRVQLNKDLVIASPD 278 (356)
Q Consensus 200 ~~~~~~~~~~E~~Ri~~~gg~v~-~~rv~g~l~~sra~Gd~~~k~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~v~~~p~ 278 (356)
..- .++|.+||+..+|+|. +++++|+...||++|.+... |+|.+.|+
T Consensus 658 ~~v----~~eE~~RI~~~~g~i~ed~k~ngvt~~tR~iG~~~l~----------------------------P~v~p~Ph 705 (1081)
T KOG0618|consen 658 LEV----DREEYKRIVDSKGFITEDNKLNGVTSSTRAIGPFSLF----------------------------PHVLPDPH 705 (1081)
T ss_pred ccC----CHHHHHHHHHhcCeecCCCeeeceeeeeeeccccccc----------------------------ccccCCCc
Confidence 431 2899999999999999 89999999999999998876 67889999
Q ss_pred EEEEEecCCCeEEEEEcCCCcCCCChHHHHHHHHHHHHccCCHHHHHHHHHHHHHhcCCCCCcEEEEEEcCCCc
Q 018392 279 IFQVSLGSDAEFVLLASDGLWDYMNSSDAVKFVRNQLQQHGDVQLACEALAQAALDQHSQDNISIVIADLGYAS 352 (356)
Q Consensus 279 i~~~~l~~~~d~lvL~SDGl~d~l~~~ei~~~v~~~l~~~~~~~~~a~~l~~~A~~~g~~DNiTvIvv~l~~~~ 352 (356)
+..+.|.+.|+|||+++-++|++|+-+++++.++ +..+|-.||++|.+.|...|+.||++|+||++....
T Consensus 706 v~~~~Lt~qdE~LIvgn~~lW~~Lsid~a~~~vR----n~~dpL~AAkKL~d~AqSYgc~~nv~vlVv~l~~~~ 775 (1081)
T KOG0618|consen 706 VSVVILTEQDEFLIVGNKQLWSVLSIDTAVDAVR----NVEDPLLAAKKLCDLAQSYGCAENVSVLVVRLNHLE 775 (1081)
T ss_pred eeeEecccCceEEEEcchHHhhhccHHHHHHHHh----cCCchHHHHHHHHHHHHhcccccCeeEEEEEeecch
Confidence 9999999999999999999999999999999996 678999999999999999999999999999996543
No 15
>PF13672 PP2C_2: Protein phosphatase 2C; PDB: 2JFT_A 2JFS_A 2V06_A 2JFR_A 2J86_A 2J82_A 2Y09_A 2XZV_A 2CM1_A 1TXO_B ....
Probab=99.85 E-value=6.4e-21 Score=170.81 Aligned_cols=188 Identities=21% Similarity=0.293 Sum_probs=108.5
Q ss_pred EeccCCCCCCCceEEEeeCCCCCeEEEEEEcCCCChhHHHHHHHHHHHHHHHHHhcCccCCCCChHH-HHHHHHHHHHHH
Q 018392 64 VSLQGLREEMEDGAVIQSDGLDGFSFAAVFDGHGGVSTVKFLRDELYKECVAALQGGLLLSGKDFDA-IKKALQEAFENV 142 (356)
Q Consensus 64 ~s~~G~r~~nED~~~~~~~~~~~~~~~~V~DG~GG~~~a~~~~~~l~~~~~~~l~~~~~~~~~~~~~-~~~~l~~a~~~~ 142 (356)
.+++|.++.|||++.+... .+..+++|+||+||...++.+++.+++.+.+.+.... ...... .+..++.+..++
T Consensus 3 ~sh~~~~~~nqD~~~~~~~--~~~~~~aVaDG~g~~~~~~~aa~~av~~~~~~l~~~~---~~~~~~~~~~~~~~~~~~~ 77 (212)
T PF13672_consen 3 RSHRGRGAPNQDAFGIRTD--DDGNLAAVADGVGGSPYGEEAAQLAVETFINYLKKLL---SQESPSSIEALIRAIKKEI 77 (212)
T ss_dssp ----TTSSS--EEEEEE-T--CCTCEEEEEEEESTTTHHHHHHHHHHHHHHHHHHHSC---CCHHHHHHHHHHHHHHHHH
T ss_pred ccccCCCCCCCCCEEeeeC--CCCEEEEEEECCCCCchhHHHHHHHHHHHHHHHHhcc---cccchHHHHHHHHHHHHHH
Confidence 4788999999999997654 3334669999999999888888888888888877532 111112 233333333333
Q ss_pred HHHH---HHHHHhccCcCCCCceEEEEEEeCCeEEEEEeccccEEE-ecCCceeecCCCCcCCCCCCCCHHHHHHHHHcC
Q 018392 143 DMKL---LNRLEMNAEEDESGATATVMFIGRDILFISHVGDCCVVL-SRTGKADVLTNPHRPYGSGQVSLQEIRRIREAG 218 (356)
Q Consensus 143 ~~~l---~~~~~~~~~~~~~GsT~~~~~i~~~~l~ianvGDSra~l-~r~g~~~~lt~dH~~~~~~~~~~~E~~Ri~~~g 218 (356)
...+ .............+||++++++.++.++++|+||||+|+ .++|++.+++.+|+.. ...
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~tTl~~~v~~~~~~~~~~iGD~~i~~~~~~g~~~~l~~~~~~~---------~~~----- 143 (212)
T PF13672_consen 78 LSIVRAFQSAKQADLELRDYGTTLLALVIDPDKVYIFNIGDSRIYVIRRNGEIQQLTDDHSGE---------YPN----- 143 (212)
T ss_dssp HHHH----HHHHHSGGGTT-EE-EEEEEEETTEEEEEEESS-EEEEEEETTEEEE-S---BHH---------HHH-----
T ss_pred HHHhhhhhhhhhccccccccCceEEEEEEECCEEEEEEECCCeEEEEECCCEEEEcCCCccch---------hhh-----
Confidence 3222 011122445677899999999999999999999999964 6899999999999741 111
Q ss_pred CEEeCCeeeceecccccccCcccccchhhhhhcccCCCccccchhcccccCCCcEEeeceEEEEEecCCCeEEEEEcCCC
Q 018392 219 GWISNGRICGDIAVSRAFGDIRFKTKKNEMLKKGVNEGRWSEKFVSRVQLNKDLVIASPDIFQVSLGSDAEFVLLASDGL 298 (356)
Q Consensus 219 g~v~~~rv~g~l~~sra~Gd~~~k~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~v~~~p~i~~~~l~~~~d~lvL~SDGl 298 (356)
.++.+.... .....++..+++.++ +.|+||||||
T Consensus 144 -------------~~~~~~~~~--------------------------------~~~~~~~~~~~~~~~-d~ilL~SDG~ 177 (212)
T PF13672_consen 144 -------------QTRSLTGDD--------------------------------PEPDVQYGSIPLEEG-DVILLCSDGV 177 (212)
T ss_dssp -------------CTTSCCHHC--------------------------------CCTETEEEEEE--TT--EEEEE-HHH
T ss_pred -------------hhhccCccc--------------------------------cccCCeEEEEEcCCC-CEEEEECcCc
Confidence 111111110 012246777888888 9999999999
Q ss_pred cCCCChHH-HHHHHHHHHH
Q 018392 299 WDYMNSSD-AVKFVRNQLQ 316 (356)
Q Consensus 299 ~d~l~~~e-i~~~v~~~l~ 316 (356)
|+.+...+ +..++.+.+.
T Consensus 178 ~~~l~~~~~~~~~l~~~~~ 196 (212)
T PF13672_consen 178 WDNLRSYEDLEQFLKDLWN 196 (212)
T ss_dssp HTTS-HHHHHHHH------
T ss_pred cccCCCHHHHHHHhhhccc
Confidence 99998655 6677765543
No 16
>smart00331 PP2C_SIG Sigma factor PP2C-like phosphatases.
Probab=99.76 E-value=1.6e-16 Score=140.21 Aligned_cols=185 Identities=16% Similarity=0.096 Sum_probs=132.4
Q ss_pred eEEEEeccCCCCCCCceEEEeeCCCCCeEEEEEEcCCCChhHHHHHHHHHHHHHHHHHhcCccCCCCChHHHHHHHHHHH
Q 018392 60 RWGSVSLQGLREEMEDGAVIQSDGLDGFSFAAVFDGHGGVSTVKFLRDELYKECVAALQGGLLLSGKDFDAIKKALQEAF 139 (356)
Q Consensus 60 ~~~~~s~~G~r~~nED~~~~~~~~~~~~~~~~V~DG~GG~~~a~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~l~~a~ 139 (356)
.+.....++. ....|.+.+... .++..+++|+||||+...|.+++..+...+.+.+... ..+.+.+
T Consensus 5 ~~~~~~~p~~-~~~GD~~~~~~~-~~~~~~~~v~Dg~G~G~~aa~~s~~~~~~~~~~~~~~------------~~~~~~l 70 (193)
T smart00331 5 LIAQYYEDAT-QVGGDFYDVVKL-PEGRLLIAIADVMGKGLAAALAMSMARSALRTLLSEG------------ISLSQIL 70 (193)
T ss_pred EEEEEEcchH-hcCccEEEEEEe-CCCeEEEEEEecCCCChHHHHHHHHHHHHHHHHhhcC------------CCHHHHH
Confidence 3333333332 457899877665 3456799999999988888888888888877665421 1244455
Q ss_pred HHHHHHHHHHHHhccCcCCCCceEEEEEE--eCCeEEEEEeccccEEEec-CCceeecCCCCcCCCCCCCCHHHHHHHHH
Q 018392 140 ENVDMKLLNRLEMNAEEDESGATATVMFI--GRDILFISHVGDCCVVLSR-TGKADVLTNPHRPYGSGQVSLQEIRRIRE 216 (356)
Q Consensus 140 ~~~~~~l~~~~~~~~~~~~~GsT~~~~~i--~~~~l~ianvGDSra~l~r-~g~~~~lt~dH~~~~~~~~~~~E~~Ri~~ 216 (356)
..+++.+... ....+|+|++++++ .+++++++|+||+|+|+++ ++...+++.+.++
T Consensus 71 ~~~n~~l~~~-----~~~~~~~T~~~~~id~~~~~l~~~~~Gd~~~~~~~~~~~~~~~~~~~~~---------------- 129 (193)
T smart00331 71 ERLNRAIYEN-----GEDGMFATLFLALYDFAGGTLSYANAGHSPPYLLRADGGLVEDLDDLGA---------------- 129 (193)
T ss_pred HHHHHHHHhc-----CCCCcEEEEEEEEEECCCCEEEEEeCCCCceEEEECCCCeEEEcCCCCc----------------
Confidence 5666666543 24568999999988 6889999999999999998 6665555554332
Q ss_pred cCCEEeCCeeeceecccccccCcccccchhhhhhcccCCCccccchhcccccCCCcEEeeceEEEEEecCCCeEEEEEcC
Q 018392 217 AGGWISNGRICGDIAVSRAFGDIRFKTKKNEMLKKGVNEGRWSEKFVSRVQLNKDLVIASPDIFQVSLGSDAEFVLLASD 296 (356)
Q Consensus 217 ~gg~v~~~rv~g~l~~sra~Gd~~~k~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~v~~~p~i~~~~l~~~~d~lvL~SD 296 (356)
.+|... ...++...+++.++ |.|+|+||
T Consensus 130 ------------------~lG~~~---------------------------------~~~~~~~~~~l~~g-d~l~l~TD 157 (193)
T smart00331 130 ------------------PLGLEP---------------------------------DVEVDVRELTLEPG-DLLLLYTD 157 (193)
T ss_pred ------------------eeeeCC---------------------------------CCcceeEEEeeCCC-CEEEEECC
Confidence 222211 12367778899999 99999999
Q ss_pred CCcCCCChHHHHHHHHHHHHccCCHHHHHHHHHHHHH
Q 018392 297 GLWDYMNSSDAVKFVRNQLQQHGDVQLACEALAQAAL 333 (356)
Q Consensus 297 Gl~d~l~~~ei~~~v~~~l~~~~~~~~~a~~l~~~A~ 333 (356)
||||.++.+++.+++.+.. ..+++++++++.+.+.
T Consensus 158 Gl~e~~~~~~l~~~l~~~~--~~~~~~~~~~i~~~~~ 192 (193)
T smart00331 158 GLTEARNPERLEELLEELL--GSPPAEIAQRILEELL 192 (193)
T ss_pred CccccCChHHHHHHHHHhc--CCCHHHHHHHHHHHHh
Confidence 9999999999888887532 3568888888887764
No 17
>TIGR02865 spore_II_E stage II sporulation protein E. Stage II sporulation protein E (SpoIIE) is a multiple membrane spanning protein with two separable functions. It plays a role in the switch to polar cell division during sporulation. By means of it protein phosphatase activity, located in the C-terminal region, it activates sigma-F. All proteins that score above the trusted cutoff to this model are found in endospore-forming Gram-positive bacteria. Surprisingly, a sequence from the Cyanobacterium-like (and presumably non-spore-forming) photosynthesizer Heliobacillus mobilis is homologous, and scores between the trusted and noise cutoffs.
Probab=99.67 E-value=6.9e-15 Score=154.14 Aligned_cols=194 Identities=18% Similarity=0.214 Sum_probs=139.9
Q ss_pred ccCCCCCCCceEEEeeCCCCCeEEEEEEcCCCChhHHHHHHHHHHHHHHHHHhcCccCCCCChHHHHHHHHHHHHHHHHH
Q 018392 66 LQGLREEMEDGAVIQSDGLDGFSFAAVFDGHGGVSTVKFLRDELYKECVAALQGGLLLSGKDFDAIKKALQEAFENVDMK 145 (356)
Q Consensus 66 ~~G~r~~nED~~~~~~~~~~~~~~~~V~DG~GG~~~a~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~l~~a~~~~~~~ 145 (356)
.++.+..+.|.+.+... .++...++|+||+|+...|..++..+.+.+.+.+..+ .+ ...++..+|+.
T Consensus 560 ~k~g~~vsGD~y~~~~l-~~g~~~~~laDGmGhG~~Aa~~S~~~~~ll~~~~~~g-----~~-------~~~ai~~lN~~ 626 (764)
T TIGR02865 560 AKDGELVSGDSYSFGKL-SAGKYAVAISDGMGSGPEAAQESSACVRLLEKFLESG-----FD-------REVAIKTVNSI 626 (764)
T ss_pred cCCCCcccCceEEEEEE-CCCEEEEEEEcccCCCHHHHHHHHHHHHHHHHHHHcC-----CC-------HHHHHHHHHHH
Confidence 34446779999987654 3555689999999977666677776666655544322 11 24566677766
Q ss_pred HHHHHHhccCcCCCCceEEEEEEe--CCeEEEEEeccccEEEecCCceeecCCCCcCCCCCCCCHHHHHHHHHcCCEEeC
Q 018392 146 LLNRLEMNAEEDESGATATVMFIG--RDILFISHVGDCCVVLSRTGKADVLTNPHRPYGSGQVSLQEIRRIREAGGWISN 223 (356)
Q Consensus 146 l~~~~~~~~~~~~~GsT~~~~~i~--~~~l~ianvGDSra~l~r~g~~~~lt~dH~~~~~~~~~~~E~~Ri~~~gg~v~~ 223 (356)
+... ....+.+|+.+++++ .+.+.++|+|+++.|+.|++++++++..+-|.
T Consensus 627 L~~~-----~~~~~faTl~l~~IDl~~g~~~~~~aG~~p~~i~r~~~v~~i~s~~lPl---------------------- 679 (764)
T TIGR02865 627 LSLR-----STDEKFSTLDLSVIDLYTGQAEFVKVGAVPSFIKRGAKVEVIRSSNLPI---------------------- 679 (764)
T ss_pred HHhC-----CCCCeEEEEEEEEEECCCCeEEEEecCCCceEEEECCEEEEecCCCcee----------------------
Confidence 5432 223468999888884 78999999999999999999998887765542
Q ss_pred CeeeceecccccccCcccccchhhhhhcccCCCccccchhcccccCCCcEEeeceEEEEEecCCCeEEEEEcCCCcCCCC
Q 018392 224 GRICGDIAVSRAFGDIRFKTKKNEMLKKGVNEGRWSEKFVSRVQLNKDLVIASPDIFQVSLGSDAEFVLLASDGLWDYMN 303 (356)
Q Consensus 224 ~rv~g~l~~sra~Gd~~~k~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~v~~~p~i~~~~l~~~~d~lvL~SDGl~d~l~ 303 (356)
|.+. ..+++....++.+| |+|+++|||+||..+
T Consensus 680 ----Gil~------------------------------------------~~~~~~~~~~L~~G-D~Lll~SDGv~E~~~ 712 (764)
T TIGR02865 680 ----GILD------------------------------------------EVDVELVRKKLKNG-DLIVMVSDGVLEGEK 712 (764)
T ss_pred ----Eecc------------------------------------------CCccceEEEEeCCC-CEEEEECCCCCcCCc
Confidence 2110 13467778899999 999999999999887
Q ss_pred hHH-----HHHHHHHHHHccCCHHHHHHHHHHHHHhcC---CCCCcEEEEEEc
Q 018392 304 SSD-----AVKFVRNQLQQHGDVQLACEALAQAALDQH---SQDNISIVIADL 348 (356)
Q Consensus 304 ~~e-----i~~~v~~~l~~~~~~~~~a~~l~~~A~~~g---~~DNiTvIvv~l 348 (356)
+.+ +.+++.+ ....+|+++++.|++.+.+.. ..||+|++++++
T Consensus 713 ~~~~~~~~l~~~l~~--~~~~~p~ela~~Il~~a~~~~~~~~~DD~Tvlvirv 763 (764)
T TIGR02865 713 EVEGKVLWLVRKLKE--TNTNDPEEIAEYLLEKAKELRSGKIKDDMTVIVAKV 763 (764)
T ss_pred ccccHHHHHHHHHHh--cCCCCHHHHHHHHHHHHHHhcCCCCCCCeEEEEEEe
Confidence 533 4444432 134689999999999998653 479999999986
No 18
>PF07228 SpoIIE: Stage II sporulation protein E (SpoIIE); InterPro: IPR001932 This domain is found in protein phosphatase 2C, as well as other proteins eg. pyruvate dehydrogenase (lipoamide)-phosphatase (3.1.3.43 from EC), adenylate cyclase (4.6.1.1 from EC) and some bacterial stage II sporulation E proteins (3.1.3.16 from EC). Protein phosphatase 2C (PP2C) is one of the four major classes of mammalian serine/threonine specific protein phosphatases (3.1.3.16 from EC). PP2C [] is a monomeric enzyme of about 42 Kd which shows broad substrate specificity and is dependent on divalent cations (mainly manganese and magnesium) for its activity. Its exact physiological role is still unclear. Three isozymes are currently known in mammals: PP2C-alpha, -beta and -gamma. In yeast, there are at least four PP2C homologs: phosphatase PTC1 [], which has weak tyrosine phosphatase activity in addition to its activity on serines, phosphatases PTC2 and PTC3, and hypothetical protein YBR125c. Isozymes of PP2C are also known from Arabidopsis thaliana (ABI1, PPH1), Caenorhabditis elegans (FEM-2, F42G9.1, T23F11.1), Leishmania chagasi and Paramecium tetraurelia. In A. thaliana, the kinase associated protein phosphatase (KAPP) [] is an enzyme that dephosphorylates the Ser/Thr receptor-like kinase RLK5 and which contains a C-terminal PP2C domain. PP2C does not seem to be evolutionary related to the main family of serine/ threonine phosphatases: PP1, PP2A and PP2B. However, it is significantly similar to the catalytic subunit of pyruvate dehydrogenase phosphatase 3.1.3.43 from EC (PDPC) [], which catalyzes dephosphorylation and concomitant reactivation of the alpha subunit of the E1 component of the pyruvate dehydrogenase complex. PDPC is a mitochondrial enzyme and, like PP2C, is magnesium-dependent.; GO: 0003824 catalytic activity; PDB: 3KE6_B 3ZT9_A 3RNR_A 3EQ2_A 3F7A_B 3F79_A 3ES2_B 3PU9_B 3T91_B 3T9Q_B ....
Probab=99.55 E-value=1.2e-12 Score=115.27 Aligned_cols=178 Identities=23% Similarity=0.273 Sum_probs=116.8
Q ss_pred CCeEEEEEEcCCCChhHHHHHHHHHHHHHHHHHhcCccCCCCChHHHHHHHHHHHHHHHHHHHHHHHhccCcCCCCceEE
Q 018392 85 DGFSFAAVFDGHGGVSTVKFLRDELYKECVAALQGGLLLSGKDFDAIKKALQEAFENVDMKLLNRLEMNAEEDESGATAT 164 (356)
Q Consensus 85 ~~~~~~~V~DG~GG~~~a~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~l~~a~~~~~~~l~~~~~~~~~~~~~GsT~~ 164 (356)
++..+++|+|+.|..-.|.+.+..+...+........ . ..+.+..+|+.+..... .....+|++
T Consensus 2 ~~~~~~~v~D~~GhG~~aa~~~~~~~~~~~~~~~~~~-----~-------p~~~l~~ln~~l~~~~~----~~~~~~t~~ 65 (193)
T PF07228_consen 2 DGRYFIIVGDVSGHGVSAALLSAALASAIRELLDEGL-----D-------PEELLEALNRRLYRDLK----GDNRYATAC 65 (193)
T ss_dssp TTEEEEEEEEESSSSHHHHHHHHHHHHHHHHHHHTTT-----S-------HHHHHHHHHHHHHHHTT----TTSTTEEEE
T ss_pred CCEEEEEEEEecCCCHHHHHHHHHHHHHHHHHHHcCC-----C-------HHHHHHHHHHHHHHHhh----hccccceEE
Confidence 4557899999999666666666666666665554321 1 44455556666544322 113678888
Q ss_pred EEEEe--CCeEEEEEeccccEEEecC--CceeecCCCCcCCCCCCCCHHHHHHHHHcCCEEeCCeeeceecccccccCcc
Q 018392 165 VMFIG--RDILFISHVGDCCVVLSRT--GKADVLTNPHRPYGSGQVSLQEIRRIREAGGWISNGRICGDIAVSRAFGDIR 240 (356)
Q Consensus 165 ~~~i~--~~~l~ianvGDSra~l~r~--g~~~~lt~dH~~~~~~~~~~~E~~Ri~~~gg~v~~~rv~g~l~~sra~Gd~~ 240 (356)
++.+. .+.++++|+|+++++++++ +....+.....+ +|-..
T Consensus 66 ~~~~d~~~~~l~~~~aG~~~~l~~~~~~~~~~~~~~~~~~-----------------------------------lG~~~ 110 (193)
T PF07228_consen 66 YAIIDPETGTLTYANAGHPPPLLLRPGGREIEQLESEGPP-----------------------------------LGIFE 110 (193)
T ss_dssp EEEEETTTTEEEEEEESSSEEEEEETTCTEEEEETCSSBB-----------------------------------CSSSC
T ss_pred EEEecccceEEEEeCCCCCCEEEEeccccceeecccCccc-----------------------------------eeeec
Confidence 88864 6789999999999999998 344444443333 11110
Q ss_pred cccchhhhhhcccCCCccccchhcccccCCCcEEeeceEEEEEecCCCeEEEEEcCCCcCCCChHH-------HHHHHHH
Q 018392 241 FKTKKNEMLKKGVNEGRWSEKFVSRVQLNKDLVIASPDIFQVSLGSDAEFVLLASDGLWDYMNSSD-------AVKFVRN 313 (356)
Q Consensus 241 ~k~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~v~~~p~i~~~~l~~~~d~lvL~SDGl~d~l~~~e-------i~~~v~~ 313 (356)
...+....+++.+| |.|+|+||||+|....+. +.+++.+
T Consensus 111 ---------------------------------~~~~~~~~~~l~~g-d~l~l~TDGl~e~~~~~~~~~~~~~~~~~l~~ 156 (193)
T PF07228_consen 111 ---------------------------------DIDYQEQEIQLEPG-DRLLLYTDGLFEALNEDGEFFGEERLLELLDE 156 (193)
T ss_dssp ---------------------------------TTCEEEEEEE--TT-EEEEEECHHHCTTTCHHCHHCCCHHHHHHHHC
T ss_pred ---------------------------------cccccceEEEeccc-cEEEEeCCChhhccCCccchhHHHHHHHHHhh
Confidence 12355668899999 999999999999985443 2344432
Q ss_pred HHHccCCHHHHHHHHHHHHHhc---CCCCCcEEEEEEcC
Q 018392 314 QLQQHGDVQLACEALAQAALDQ---HSQDNISIVIADLG 349 (356)
Q Consensus 314 ~l~~~~~~~~~a~~l~~~A~~~---g~~DNiTvIvv~l~ 349 (356)
. ...++++.++.|++.+.+. ...||+|++++++.
T Consensus 157 ~--~~~~~~~~~~~l~~~~~~~~~~~~~DD~tvl~~~~~ 193 (193)
T PF07228_consen 157 N--RGLSPQEIIDALLEAIDRFGKGPLRDDITVLVIRRQ 193 (193)
T ss_dssp H--TTS-HHHHHHHHHHHHHHHTTSSTSS-EEEEEEEE-
T ss_pred c--cCCCHHHHHHHHHHHHHHhcCCCCCCceEEEEEEEC
Confidence 1 3467999999999999874 47799999999863
No 19
>COG2208 RsbU Serine phosphatase RsbU, regulator of sigma subunit [Signal transduction mechanisms / Transcription]
Probab=98.63 E-value=8.1e-06 Score=79.37 Aligned_cols=189 Identities=15% Similarity=0.109 Sum_probs=119.0
Q ss_pred CCCceEEEeeCCCCCeEEEEEEcCCC-ChhHHHHHHHHHHHHHHHHHhcCccCCCCChHHHHHHHHHHHHHHHHHHHHHH
Q 018392 72 EMEDGAVIQSDGLDGFSFAAVFDGHG-GVSTVKFLRDELYKECVAALQGGLLLSGKDFDAIKKALQEAFENVDMKLLNRL 150 (356)
Q Consensus 72 ~nED~~~~~~~~~~~~~~~~V~DG~G-G~~~a~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~l~~a~~~~~~~l~~~~ 150 (356)
-.-|.|-+..... ....++|.|..| |-.++-. -.......+.+... ....+..+. ..+|+.+...
T Consensus 161 vGGD~yd~~~~~~-~~~~i~I~DvsG~Gv~aal~--m~~~~~~~~~~~~~---~~~~p~~~l-------~~~n~~~~~~- 226 (367)
T COG2208 161 VGGDYYDFIQLGE-KRLRIGIGDVSGKGVPAALL--MLMPKLALRLLLES---GPLDPADVL-------ETLNRVLKQN- 226 (367)
T ss_pred cCCceEEEEEECC-cEEEEEEEeccCCCHHHHHH--HHHHHHHHHHhhhc---ccCCHHHHH-------HHHHHHHHhc-
Confidence 5678876655433 456889999999 5555444 22333333333321 122333332 3333333322
Q ss_pred HhccCcCCCCceEEEEEEe--CCeEEEEEeccccEEEecCCce---eecCCCCcCCCCCCCCHHHHHHHHHcCCEEeCCe
Q 018392 151 EMNAEEDESGATATVMFIG--RDILFISHVGDCCVVLSRTGKA---DVLTNPHRPYGSGQVSLQEIRRIREAGGWISNGR 225 (356)
Q Consensus 151 ~~~~~~~~~GsT~~~~~i~--~~~l~ianvGDSra~l~r~g~~---~~lt~dH~~~~~~~~~~~E~~Ri~~~gg~v~~~r 225 (356)
....+-+|+...+++ .+.+..+|+|---.++++.++. ..+...-
T Consensus 227 ----~~~~~f~T~~~~~~d~~~~~l~y~~aGH~p~~i~~~~~~~~~~~l~~~g--------------------------- 275 (367)
T COG2208 227 ----LEEDMFVTLFLGVYDLDSGELTYSNAGHEPALILSADGEIEVEDLTALG--------------------------- 275 (367)
T ss_pred ----ccCCcEEEEEEEEEeccCCEEEEeeCCCCCeeEEEcCCCceeEEccCCC---------------------------
Confidence 112266788877774 6799999999999888876532 2222222
Q ss_pred eeceecccccccCcccccchhhhhhcccCCCccccchhcccccCCCcEEeeceEEEEEecCCCeEEEEEcCCCcC-----
Q 018392 226 ICGDIAVSRAFGDIRFKTKKNEMLKKGVNEGRWSEKFVSRVQLNKDLVIASPDIFQVSLGSDAEFVLLASDGLWD----- 300 (356)
Q Consensus 226 v~g~l~~sra~Gd~~~k~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~v~~~p~i~~~~l~~~~d~lvL~SDGl~d----- 300 (356)
.++|... ...+.+....+.+| |.+++.|||+.+
T Consensus 276 --------~piG~~~---------------------------------~~~~~~~~~~l~~g-d~lvl~tDGv~Ea~~~~ 313 (367)
T COG2208 276 --------LPIGLLP---------------------------------DYQYEVASLQLEPG-DLLVLYTDGVTEARNSD 313 (367)
T ss_pred --------ceeeecC---------------------------------CccchheeEEecCC-CEEEEEcCCeeeeecCC
Confidence 2223211 24466778889998 999999999998
Q ss_pred --CCChHHHHHHHHHHHHccCCHHHHHHHHHHHHHhcC----CCCCcEEEEEEcC
Q 018392 301 --YMNSSDAVKFVRNQLQQHGDVQLACEALAQAALDQH----SQDNISIVIADLG 349 (356)
Q Consensus 301 --~l~~~ei~~~v~~~l~~~~~~~~~a~~l~~~A~~~g----~~DNiTvIvv~l~ 349 (356)
.+..+...+++.+ ....+++++++.+.+...+.- -.||+|++++++.
T Consensus 314 ~~~~~~~~~~~~~~~--~~~~~~~e~~~~i~~~l~~~~~~~~~~DDiTll~lk~~ 366 (367)
T COG2208 314 GEFFGLERLLKILGR--LLGQPAEEILEAILESLEELQGDQIQDDDITLLVLKVK 366 (367)
T ss_pred ccEecHHHHHHHHHH--HhCCCHHHHHHHHHHHHHHhhCCccccCceEEEEEEec
Confidence 5566777777754 245688999998888887643 4588999999875
No 20
>COG3700 AphA Acid phosphatase (class B) [General function prediction only]
Probab=54.15 E-value=16 Score=31.66 Aligned_cols=49 Identities=20% Similarity=0.312 Sum_probs=35.7
Q ss_pred CeEEEEEcCCCc-----------CCCChHHHHHHHHHHHHccCCHHHHHHHHHHHHHhcC
Q 018392 288 AEFVLLASDGLW-----------DYMNSSDAVKFVRNQLQQHGDVQLACEALAQAALDQH 336 (356)
Q Consensus 288 ~d~lvL~SDGl~-----------d~l~~~ei~~~v~~~l~~~~~~~~~a~~l~~~A~~~g 336 (356)
||-++..|.|+| |||.++...+.+..-..+..=|.+.|.+|++.-.+||
T Consensus 71 DDTvLFsSp~F~~Gk~~~sPgs~DyLknq~FW~~vn~g~D~~SIPKevA~qLI~MHq~RG 130 (237)
T COG3700 71 DDTVLFSSPGFWRGKKYFSPGSEDYLKNQVFWEKVNNGWDEFSIPKEVARQLIDMHQRRG 130 (237)
T ss_pred CCeeEecccccccCccccCCChHHhhcCHHHHHHHhcCCccccchHHHHHHHHHHHHhcC
Confidence 488999999988 4666777666664322233458899999999888876
No 21
>PRK10693 response regulator of RpoS; Provisional
Probab=52.86 E-value=2e+02 Score=26.90 Aligned_cols=105 Identities=11% Similarity=0.013 Sum_probs=53.2
Q ss_pred CCceEEEeeCCCCCeEEEEEEc--CCCChhH-HHHHHHHHHHHHHHHHhcCccCCCCChHHHHHHHHHHHHHHHHHHHHH
Q 018392 73 MEDGAVIQSDGLDGFSFAAVFD--GHGGVST-VKFLRDELYKECVAALQGGLLLSGKDFDAIKKALQEAFENVDMKLLNR 149 (356)
Q Consensus 73 nED~~~~~~~~~~~~~~~~V~D--G~GG~~~-a~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~l~~a~~~~~~~l~~~ 149 (356)
.-|.+-+.... ++...|-++| ||||+.+ +.+....+...+.+..... ....... ..+.+..+|+.+...
T Consensus 150 ~GD~~d~~~l~-~~~~~~~~~DvsGhg~hg~~aa~l~~~~~~~~~~~~~~~---~~~~~~~----p~~~l~~lN~~l~~~ 221 (303)
T PRK10693 150 PGLVLDIAALS-DNDLAFYCLDVTRAGDNGVLAALLLRALFNGLLQEQLAH---QNQRLPE----LGALLKQVNHLLRQA 221 (303)
T ss_pred CccEEeeeecC-CCcEEEEEEecCCCCcccHHHHHHHHHHHHHHHHHHhcc---cccccCC----HHHHHHHHHHHHHhc
Confidence 56777665543 3334555555 7776652 3333334333333322100 0000011 233455666665542
Q ss_pred HHhccCcCCCCceEEEEEEe--CCeEEEEEeccccEEEecCCce
Q 018392 150 LEMNAEEDESGATATVMFIG--RDILFISHVGDCCVVLSRTGKA 191 (356)
Q Consensus 150 ~~~~~~~~~~GsT~~~~~i~--~~~l~ianvGDSra~l~r~g~~ 191 (356)
. .. ...|++..+++ .+.+.++|.|-...++..++++
T Consensus 222 ~-----~~-~~~t~~~~~~d~~~~~l~~~~AGhp~~~~~~~~~~ 259 (303)
T PRK10693 222 N-----LP-GQFPLLVGYYHRELKNLILVSAGLNATLNTGEHQV 259 (303)
T ss_pred C-----CC-ceeeEEEEEEEcCCCeEEEEeCCCCCEEecCCeEE
Confidence 1 11 12477777774 5689999999999886444444
No 22
>PRK06369 nac nascent polypeptide-associated complex protein; Reviewed
Probab=45.94 E-value=1.3e+02 Score=24.13 Aligned_cols=56 Identities=14% Similarity=0.183 Sum_probs=36.9
Q ss_pred CCcEEeeceEEEEEecCCCeEEEEEcCCCcC-------CCChHHHHHHHHHHHHccCCHHHHHHHH
Q 018392 270 KDLVIASPDIFQVSLGSDAEFVLLASDGLWD-------YMNSSDAVKFVRNQLQQHGDVQLACEAL 328 (356)
Q Consensus 270 ~~~v~~~p~i~~~~l~~~~d~lvL~SDGl~d-------~l~~~ei~~~v~~~l~~~~~~~~~a~~l 328 (356)
..+|+..|+++..+....+-|.|.+..-.-+ -+++++|.-++. +.+-+.+++-++|
T Consensus 36 ~~~Vi~~P~V~~m~~~g~~tY~I~Ge~~~e~~~~~~~~~i~~edI~lv~~---q~gvs~~~A~~AL 98 (115)
T PRK06369 36 KEIVFENPQVTVMDAQGQKTYQIVGEPEEVEKEAEKEVEIPEEDIELVAE---QTGVSEEEARKAL 98 (115)
T ss_pred EEEEEcCCeEEEEecCCCcEEEEEeccEEeeccccccCCCCHHHHHHHHH---HHCcCHHHHHHHH
Confidence 5778899999998887775688888777754 356666554443 2344545544443
No 23
>PF09436 DUF2016: Domain of unknown function (DUF2016); InterPro: IPR018560 This entry represents the N-terminal of proteins that contain a ubiquitin domain.
Probab=45.20 E-value=13 Score=27.15 Aligned_cols=18 Identities=22% Similarity=0.355 Sum_probs=14.4
Q ss_pred CCCeEEEEEcCCCcCCCCh
Q 018392 286 SDAEFVLLASDGLWDYMNS 304 (356)
Q Consensus 286 ~~~d~lvL~SDGl~d~l~~ 304 (356)
+| +.+++++||+|=-+..
T Consensus 26 ~G-~Rllva~nGv~lEv~r 43 (72)
T PF09436_consen 26 PG-HRLLVASNGVFLEVRR 43 (72)
T ss_pred CC-cEEEEecCcEEEEEec
Confidence 66 9999999999955443
No 24
>COG4079 Uncharacterized protein conserved in archaea [Function unknown]
Probab=31.28 E-value=4.2e+02 Score=24.32 Aligned_cols=56 Identities=23% Similarity=0.282 Sum_probs=31.9
Q ss_pred eEEEEEEeCCeEEEEEeccccEEEecCCceeecCCCCcCCCCCCCCHHHHHHHHH-cCC
Q 018392 162 TATVMFIGRDILFISHVGDCCVVLSRTGKADVLTNPHRPYGSGQVSLQEIRRIRE-AGG 219 (356)
Q Consensus 162 T~~~~~i~~~~l~ianvGDSra~l~r~g~~~~lt~dH~~~~~~~~~~~E~~Ri~~-~gg 219 (356)
|++++++..+-..+ .||-|-+.++..+...---....+.....+.+|+.|..+ +|-
T Consensus 2 tLviay~gknGavi--aGDrR~i~frgdee~re~lEekLYsGeIkteEEL~r~aeel~V 58 (293)
T COG4079 2 TLVIAYIGKNGAVI--AGDRREITFRGDEEDREKLEEKLYSGEIKTEEELARKAEELGV 58 (293)
T ss_pred eEEEEEecCCCcEE--eccceEEEEecChhHHHHHHHHhhcCccccHHHHHHHHHHcCC
Confidence 66777776666555 489998888866432222222333333344677777544 443
No 25
>COG1539 FolB Dihydroneopterin aldolase [Coenzyme metabolism]
Probab=29.77 E-value=2.1e+02 Score=23.10 Aligned_cols=58 Identities=16% Similarity=0.247 Sum_probs=43.2
Q ss_pred EEEcCCCcCCCChHHHHHHHHHHHHccC--CHHHHHHHHHHHHHhcCCCCCcEEEEEEcCCC
Q 018392 292 LLASDGLWDYMNSSDAVKFVRNQLQQHG--DVQLACEALAQAALDQHSQDNISIVIADLGYA 351 (356)
Q Consensus 292 vL~SDGl~d~l~~~ei~~~v~~~l~~~~--~~~~~a~~l~~~A~~~g~~DNiTvIvv~l~~~ 351 (356)
-..||=+-|.++..++.+.+.+.+++.. -.+.+|+.+.+...++- ..++.+-+.+.++
T Consensus 42 A~~~Ddl~dtl~Y~~v~~~i~~~v~~~~~~LiE~lA~~ia~~l~~~~--~~v~~~~v~v~KP 101 (121)
T COG1539 42 AAESDDLADTLNYAEVSELIKEIVEGKRFALIETLAEEIADLLLARF--PRVELVEVKVTKP 101 (121)
T ss_pred hcCccchhheecHHHHHHHHHHHHhCCccchHHHHHHHHHHHHHhhC--CccEEEEEEEECC
Confidence 4568999999999999999988876653 46778888888887764 5556555555443
No 26
>COG2168 DsrH Uncharacterized conserved protein involved in oxidation of intracellular sulfur [Inorganic ion transport and metabolism]
Probab=27.61 E-value=18 Score=27.89 Aligned_cols=54 Identities=22% Similarity=0.273 Sum_probs=36.7
Q ss_pred EEecCCCeEEEEEcCCCcCCCChHHHHHHHHHHHHccCCHHHHHHHHHHHHHhcCCCCCcEE
Q 018392 282 VSLGSDAEFVLLASDGLWDYMNSSDAVKFVRNQLQQHGDVQLACEALAQAALDQHSQDNISI 343 (356)
Q Consensus 282 ~~l~~~~d~lvL~SDGl~d~l~~~ei~~~v~~~l~~~~~~~~~a~~l~~~A~~~g~~DNiTv 343 (356)
.-+.++ |-|+|+.|||+-.+...+..+-++. .| .-+=.|-+-..+||-.+.++-
T Consensus 20 ~~l~~~-D~vlL~qdGV~aAl~~~~~~~sl~~------~p-~~~~alkeDl~ARGl~~~~s~ 73 (96)
T COG2168 20 RLLTEG-DAVLLLQDGVYAALKGNRYLASLRE------SP-IKVYALKEDLLARGLTGQISR 73 (96)
T ss_pred HHhccc-CeEEEEcccchhhhcCcHHHHHHhc------Cc-cceeeehhhHHhccchhhcCc
Confidence 335677 8999999999999988887766642 22 223456666677776555543
No 27
>PF06972 DUF1296: Protein of unknown function (DUF1296); InterPro: IPR009719 This family represents a conserved region approximately 60 residues long within a number of plant proteins of unknown function.
Probab=25.97 E-value=1.1e+02 Score=21.39 Aligned_cols=26 Identities=12% Similarity=0.130 Sum_probs=22.2
Q ss_pred CChHHHHHHHHHHHHccCCHHHHHHHHHH
Q 018392 302 MNSSDAVKFVRNQLQQHGDVQLACEALAQ 330 (356)
Q Consensus 302 l~~~ei~~~v~~~l~~~~~~~~~a~~l~~ 330 (356)
-+++||..++.+ .+.||.+++++|+.
T Consensus 19 hse~eIya~L~e---cnMDpnea~qrLL~ 44 (60)
T PF06972_consen 19 HSEEEIYAMLKE---CNMDPNEAVQRLLS 44 (60)
T ss_pred CCHHHHHHHHHH---hCCCHHHHHHHHHh
Confidence 578999999985 57899999999986
No 28
>cd00534 DHNA_DHNTPE Dihydroneopterin aldolase (DHNA) and 7,8-dihydroneopterin triphosphate epimerase domain (DHNTPE); these enzymes have been designated folB and folX, respectively. Folate derivatives are essential cofactors in the biosynthesis of purines, pyrimidines, and amino acids, as well as formyl-tRNA. Mammalian cells are able to utilize pre-formed folates after uptake by a carrier-mediated active transport system. Most microbes and plants lack this system and must synthesize folates de novo from guanosine triphosphate. One enzyme from this pathway is DHNA which catalyses the conversion of 7,8-dihydroneopterin to 6-hydroxymethyl-7,8-dihydropterin in the biosynthetic pathway of tetrahydrofolate. Though it is known that DHNTPE catalyzes the epimerization of dihydroneopterin triphosphate to dihydromonapterin triphosphate, the biological role of this enzyme is still unclear. It is hypothesized that it is not an essential protein since a folX knockout in E. coli has a normal phenoty
Probab=24.60 E-value=2.5e+02 Score=22.07 Aligned_cols=56 Identities=18% Similarity=0.265 Sum_probs=41.2
Q ss_pred EEcCCCcCCCChHHHHHHHHHHHHcc--CCHHHHHHHHHHHHHhc-CCCCCcEEEEEEc
Q 018392 293 LASDGLWDYMNSSDAVKFVRNQLQQH--GDVQLACEALAQAALDQ-HSQDNISIVIADL 348 (356)
Q Consensus 293 L~SDGl~d~l~~~ei~~~v~~~l~~~--~~~~~~a~~l~~~A~~~-g~~DNiTvIvv~l 348 (356)
-.||-+-+.++...+.+.+.+.+... ...+.+|+.|.+..... ..-+.+++-|-+.
T Consensus 42 ~~~D~l~~tidY~~l~~~i~~~~~~~~~~llE~La~~ia~~i~~~~~~v~~v~v~v~K~ 100 (118)
T cd00534 42 GESDDLADTLNYAEVAKLIKKIVEGSPFKLIETLAEEIADILLEDYPKVSAIKVKVEKP 100 (118)
T ss_pred hccCChhhccCHHHHHHHHHHHHhCCCHhHHHHHHHHHHHHHHHhCCCceEEEEEEECC
Confidence 46899999999999999998877643 46788899999988876 3334555544443
No 29
>PF05402 PqqD: Coenzyme PQQ synthesis protein D (PqqD); InterPro: IPR008792 This family contains several bacterial coenzyme PQQ synthesis protein D (PqqD) sequences. This protein is required for coenzyme pyrrolo-quinoline-quinone (PQQ) biosynthesis.; PDB: 3G2B_A.
Probab=23.79 E-value=1.7e+02 Score=20.25 Aligned_cols=41 Identities=24% Similarity=0.349 Sum_probs=14.3
Q ss_pred eEEEEEcCCCcCCCChHHHHHHHHHHHHccCCHHHHHHHHHHH
Q 018392 289 EFVLLASDGLWDYMNSSDAVKFVRNQLQQHGDVQLACEALAQA 331 (356)
Q Consensus 289 d~lvL~SDGl~d~l~~~ei~~~v~~~l~~~~~~~~~a~~l~~~ 331 (356)
+++++-.++-. +.-.+...+|.+.+....+++++++.|.+.
T Consensus 2 e~vll~~~~~~--~~Ln~~a~~Iw~~~~g~~t~~ei~~~l~~~ 42 (68)
T PF05402_consen 2 EYVLLDPESGE--FTLNETAAFIWELLDGPRTVEEIVDALAEE 42 (68)
T ss_dssp EEEEE------------THHHHHHHH--SSS-HHHHHHHHHHH
T ss_pred CEEEEeCCCCC--ccccHHHHHHHHHccCCCCHHHHHHHHHHH
Confidence 44555444443 233444444555554445555555555543
No 30
>PRK11593 folB bifunctional dihydroneopterin aldolase/dihydroneopterin triphosphate 2'-epimerase; Provisional
Probab=23.71 E-value=2.7e+02 Score=22.04 Aligned_cols=45 Identities=20% Similarity=0.220 Sum_probs=36.3
Q ss_pred EEEcCCCcCCCChHHHHHHHHHHHHcc--CCHHHHHHHHHHHHHhcC
Q 018392 292 LLASDGLWDYMNSSDAVKFVRNQLQQH--GDVQLACEALAQAALDQH 336 (356)
Q Consensus 292 vL~SDGl~d~l~~~ei~~~v~~~l~~~--~~~~~~a~~l~~~A~~~g 336 (356)
.-.||-+-+.++...+.+.+.+...+. .-.+.+|+.|.+.....-
T Consensus 41 a~~~Ddl~~tidY~~v~~~I~~~~~~~~~~LlE~la~~ia~~i~~~~ 87 (119)
T PRK11593 41 AAKSDDVADCLSYADIAETVISHVEGARFALVERVAEEVAELLLARF 87 (119)
T ss_pred cccccCHhhccCHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHhhC
Confidence 355889999999999999998877644 377888999998887664
No 31
>TIGR00525 folB dihydroneopterin aldolase. This model describes a bacterial dihydroneopterin aldolase, shown to form homo-octamers in E. coli. The equivalent activity is catalyzed by domains of larger folate biosynthesis proteins in other systems. The closely related parologous enzyme in E. coli, dihydroneopterin triphosphate epimerase, which is also homo-octameric, and dihydroneopterin aldolase domains of larger proteins, score below the trusted cutoff but may score well above the noise cutoff.
Probab=23.65 E-value=3.3e+02 Score=21.33 Aligned_cols=58 Identities=10% Similarity=0.154 Sum_probs=43.1
Q ss_pred EEcCCCcCCCChHHHHHHHHHHHHcc--CCHHHHHHHHHHHHHhcCC-CCCcEEEEEEcCC
Q 018392 293 LASDGLWDYMNSSDAVKFVRNQLQQH--GDVQLACEALAQAALDQHS-QDNISIVIADLGY 350 (356)
Q Consensus 293 L~SDGl~d~l~~~ei~~~v~~~l~~~--~~~~~~a~~l~~~A~~~g~-~DNiTvIvv~l~~ 350 (356)
-.+|.+-+.++..++.+.+...+.+. .-.+.+|+.+++..+.... -+-+++-+-+.+.
T Consensus 41 ~~~D~l~~tidY~~v~~~i~~~~~~~~~~llE~la~~Ia~~i~~~~~~v~~v~v~i~Kp~a 101 (116)
T TIGR00525 41 AESDDLGDTVNYAELYSAIEEIVAEKPRDLIETVAYRIADRLFADFPQVQRVKVRVSKPNA 101 (116)
T ss_pred hccCCchhccCHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHCCCceEEEEEEEeCCC
Confidence 45899999999999999998777643 3677888999988887643 5666666655543
No 32
>COG3411 Ferredoxin [Energy production and conversion]
Probab=22.93 E-value=1.8e+02 Score=20.73 Aligned_cols=35 Identities=20% Similarity=0.453 Sum_probs=28.4
Q ss_pred eEEEEEcCCCc-CCCChHHHHHHHHHHHHccCCHHH
Q 018392 289 EFVLLASDGLW-DYMNSSDAVKFVRNQLQQHGDVQL 323 (356)
Q Consensus 289 d~lvL~SDGl~-d~l~~~ei~~~v~~~l~~~~~~~~ 323 (356)
-.++.--||+| ..++.+++-+++.+.+.++..+++
T Consensus 18 Pvl~vYpegvWY~~V~p~~a~rIv~~hl~~Gr~Ve~ 53 (64)
T COG3411 18 PVLVVYPEGVWYTRVDPEDARRIVQSHLLGGRPVEE 53 (64)
T ss_pred CEEEEecCCeeEeccCHHHHHHHHHHHHhCCCcchh
Confidence 57888889999 688999999999888876665544
No 33
>PF01436 NHL: NHL repeat; InterPro: IPR001258 The NHL repeat, named after NCL-1, HT2A and Lin-41, is found largely in a large number of eukaryotic and prokaryotic proteins. For example, the repeat is found in a variety of enzymes of the copper type II, ascorbate-dependent monooxygenase family which catalyse the C terminus alpha-amidation of biological peptides []. In many it occurs in tandem arrays, for example in the ringfinger beta-box, coiled-coil (RBCC) eukaryotic growth regulators []. The 'Brain Tumor' protein (Brat) is one such growth regulator that contains a 6-bladed NHL-repeat beta-propeller [, ]. The NHL repeats are also found in serine/threonine protein kinase (STPK) in diverse range of pathogenic bacteria. These STPK are transmembrane receptors with a intracellular N-terminal kinase domain and extracellular C-terminal sensor domain. In the STPK, PknD, from Mycobacterium tuberculosis, the sensor domain forms a rigid, six-bladed b-propeller composed of NHL repeats with a flexible tether to the transmembrane domain.; GO: 0005515 protein binding; PDB: 3FVZ_A 3FW0_A 1RWL_A 1RWI_A 1Q7F_A.
Probab=20.53 E-value=1.8e+02 Score=16.51 Aligned_cols=20 Identities=10% Similarity=0.192 Sum_probs=15.8
Q ss_pred EEeCCeEEEEEeccccEEEe
Q 018392 167 FIGRDILFISHVGDCCVVLS 186 (356)
Q Consensus 167 ~i~~~~l~ianvGDSra~l~ 186 (356)
+-.++.+||+-.|..|+..+
T Consensus 9 v~~~g~i~VaD~~n~rV~vf 28 (28)
T PF01436_consen 9 VDSDGNIYVADSGNHRVQVF 28 (28)
T ss_dssp EETTSEEEEEECCCTEEEEE
T ss_pred EeCCCCEEEEECCCCEEEEC
Confidence 33788999999999887653
No 34
>COG0416 PlsX Fatty acid/phospholipid biosynthesis enzyme [Lipid metabolism]
Probab=20.09 E-value=5.1e+02 Score=24.93 Aligned_cols=27 Identities=30% Similarity=0.454 Sum_probs=19.3
Q ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHh
Q 018392 126 KDFDAIKKALQEAFENVDMKLLNRLEM 152 (356)
Q Consensus 126 ~~~~~~~~~l~~a~~~~~~~l~~~~~~ 152 (356)
.+...+..+|+.|...++.++....+.
T Consensus 303 ad~~a~~~AI~~a~~~~~~~v~~~I~~ 329 (338)
T COG0416 303 ADARAFASAIRQAYEMVKSQVPQRIEA 329 (338)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345677788888888888777765543
Done!