Query 018393
Match_columns 356
No_of_seqs 144 out of 716
Neff 5.9
Searched_HMMs 46136
Date Fri Mar 29 08:38:39 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018393.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/018393hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02405 hexokinase 100.0 3E-111 6E-116 860.3 35.8 352 1-353 1-352 (497)
2 PLN02596 hexokinase-like 100.0 1E-109 3E-114 846.4 36.0 350 1-353 2-352 (490)
3 PLN02362 hexokinase 100.0 2E-109 5E-114 848.5 34.9 351 1-353 1-351 (509)
4 PLN02914 hexokinase 100.0 5E-105 1E-109 812.5 31.2 317 36-354 36-352 (490)
5 KOG1369 Hexokinase [Carbohydra 100.0 3E-97 6E-102 747.0 27.2 314 26-345 16-333 (474)
6 PTZ00107 hexokinase; Provision 100.0 4.6E-95 1E-99 737.4 30.8 294 35-340 5-325 (464)
7 COG5026 Hexokinase [Carbohydra 100.0 1.4E-85 3.1E-90 648.8 26.1 316 33-354 13-332 (466)
8 PF00349 Hexokinase_1: Hexokin 100.0 3.6E-63 7.8E-68 457.2 21.1 202 36-242 2-206 (206)
9 PF03727 Hexokinase_2: Hexokin 100.0 4.2E-37 9.1E-42 290.1 7.6 106 244-353 1-108 (243)
10 PRK09698 D-allose kinase; Prov 98.5 3.4E-06 7.5E-11 81.3 15.4 163 94-282 3-168 (302)
11 PRK13311 N-acetyl-D-glucosamin 98.3 3.1E-05 6.8E-10 73.3 16.2 137 97-263 2-142 (256)
12 PRK12408 glucokinase; Provisio 98.1 3.6E-05 7.9E-10 76.1 13.5 193 89-330 9-220 (336)
13 TIGR00744 ROK_glcA_fam ROK fam 98.1 0.0001 2.2E-09 71.4 16.1 156 98-282 1-162 (318)
14 PRK13310 N-acetyl-D-glucosamin 98.1 0.0001 2.2E-09 71.1 15.2 156 97-282 2-161 (303)
15 COG1940 NagC Transcriptional r 98.1 7.1E-05 1.5E-09 72.5 14.0 168 93-286 4-175 (314)
16 PTZ00288 glucokinase 1; Provis 98.0 0.0002 4.3E-09 72.9 15.6 222 60-330 6-272 (405)
17 PRK09557 fructokinase; Reviewe 97.9 0.0003 6.5E-09 67.9 15.0 137 97-263 2-142 (301)
18 PRK05082 N-acetylmannosamine k 97.8 0.00048 1.1E-08 66.1 14.8 155 97-282 3-160 (291)
19 PF00480 ROK: ROK family; Int 97.8 0.00041 9E-09 61.4 12.8 132 99-262 1-136 (179)
20 PRK14101 bifunctional glucokin 97.7 0.00028 6E-09 75.6 12.2 187 94-331 17-218 (638)
21 PRK00292 glk glucokinase; Prov 97.6 0.00076 1.7E-08 65.7 12.8 181 96-329 3-201 (316)
22 TIGR00749 glk glucokinase, pro 97.3 0.0013 2.8E-08 64.4 10.0 185 98-331 1-203 (316)
23 smart00732 YqgFc Likely ribonu 97.2 0.0033 7.2E-08 50.3 9.7 48 96-153 2-49 (99)
24 PF02685 Glucokinase: Glucokin 97.0 0.0028 6.1E-08 62.6 8.4 184 98-329 1-201 (316)
25 PF01869 BcrAD_BadFG: BadF/Bad 95.9 0.14 3E-06 48.7 12.5 137 98-288 1-137 (271)
26 PF00370 FGGY_N: FGGY family o 95.8 0.045 9.8E-07 51.1 8.8 59 97-158 2-63 (245)
27 KOG1794 N-Acetylglucosamine ki 95.6 0.094 2E-06 51.4 9.8 158 94-287 2-176 (336)
28 TIGR01315 5C_CHO_kinase FGGY-f 94.3 0.29 6.3E-06 51.5 10.2 60 97-159 2-64 (541)
29 PRK10939 autoinducer-2 (AI-2) 94.0 0.23 5E-06 51.9 8.9 61 96-159 4-69 (520)
30 TIGR01314 gntK_FGGY gluconate 93.5 0.25 5.4E-06 51.4 7.9 60 97-159 2-64 (505)
31 TIGR01311 glycerol_kin glycero 93.2 0.26 5.6E-06 51.1 7.5 60 97-159 3-65 (493)
32 PRK13318 pantothenate kinase; 93.1 1.1 2.3E-05 42.7 11.0 95 233-337 113-211 (258)
33 PRK15027 xylulokinase; Provisi 92.7 0.38 8.3E-06 49.8 7.8 60 96-158 1-63 (484)
34 PRK00047 glpK glycerol kinase; 92.5 0.33 7.2E-06 50.4 7.2 61 96-159 6-69 (498)
35 COG2971 Predicted N-acetylgluc 92.5 1.1 2.4E-05 44.1 10.3 122 96-255 6-128 (301)
36 TIGR01234 L-ribulokinase L-rib 92.2 0.47 1E-05 49.8 7.9 60 97-159 3-77 (536)
37 TIGR01312 XylB D-xylulose kina 91.6 0.44 9.6E-06 48.8 6.8 60 98-160 1-63 (481)
38 PRK10331 L-fuculokinase; Provi 91.6 0.7 1.5E-05 47.6 8.2 60 96-158 3-67 (470)
39 COG1070 XylB Sugar (pentulose 91.5 0.54 1.2E-05 49.1 7.4 61 96-158 5-68 (502)
40 PTZ00294 glycerol kinase-like 91.5 0.69 1.5E-05 48.2 8.1 61 96-159 3-66 (504)
41 PLN02295 glycerol kinase 90.6 0.84 1.8E-05 47.7 7.8 60 97-159 2-64 (512)
42 TIGR02628 fuculo_kin_coli L-fu 90.1 1 2.2E-05 46.5 7.8 58 97-157 3-65 (465)
43 PRK04123 ribulokinase; Provisi 88.4 1.9 4.1E-05 45.4 8.4 61 96-159 4-74 (548)
44 TIGR01174 ftsA cell division p 86.1 25 0.00055 35.0 14.6 35 204-240 156-190 (371)
45 COG0837 Glk Glucokinase [Carbo 85.4 11 0.00024 37.4 11.2 101 217-330 91-206 (320)
46 PRK13321 pantothenate kinase; 85.4 2 4.4E-05 40.9 6.1 48 97-153 2-49 (256)
47 TIGR02627 rhamnulo_kin rhamnul 84.9 2.2 4.7E-05 43.8 6.5 59 98-156 1-63 (454)
48 TIGR01175 pilM type IV pilus a 82.1 18 0.00039 35.4 11.5 101 96-217 4-106 (348)
49 PRK13410 molecular chaperone D 81.5 4.3 9.4E-05 44.2 7.4 19 95-113 2-20 (668)
50 PRK15080 ethanolamine utilizat 81.1 14 0.00031 35.3 10.1 115 89-238 18-132 (267)
51 KOG2517 Ribulose kinase and re 78.5 18 0.00038 38.5 10.4 97 94-201 5-103 (516)
52 CHL00094 dnaK heat shock prote 78.2 6.3 0.00014 42.4 7.3 18 96-113 3-20 (621)
53 PTZ00186 heat shock 70 kDa pre 74.8 13 0.00028 40.5 8.6 33 77-113 13-45 (657)
54 COG1069 AraB Ribulose kinase [ 73.9 13 0.00028 39.5 7.9 98 96-199 4-103 (544)
55 PRK00290 dnaK molecular chaper 73.0 6.7 0.00015 42.2 5.9 18 96-113 3-20 (627)
56 PRK13324 pantothenate kinase; 71.7 29 0.00063 33.4 9.3 47 97-151 2-48 (258)
57 PTZ00400 DnaK-type molecular c 71.3 12 0.00026 40.7 7.4 19 95-113 41-59 (663)
58 PRK05183 hscA chaperone protei 71.3 8.9 0.00019 41.3 6.3 20 94-113 18-37 (616)
59 COG0554 GlpK Glycerol kinase [ 69.6 15 0.00033 38.5 7.3 106 95-214 5-119 (499)
60 PLN03184 chloroplast Hsp70; Pr 67.6 16 0.00035 39.9 7.3 18 96-113 40-57 (673)
61 PRK13320 pantothenate kinase; 64.6 53 0.0011 31.2 9.4 17 97-113 4-20 (244)
62 TIGR00241 CoA_E_activ CoA-subs 64.0 26 0.00055 33.0 7.2 47 97-158 2-48 (248)
63 PLN02669 xylulokinase 63.0 25 0.00054 37.4 7.6 63 87-155 3-81 (556)
64 PTZ00009 heat shock 70 kDa pro 62.4 21 0.00045 38.8 7.0 19 95-113 4-22 (653)
65 TIGR00671 baf pantothenate kin 58.1 69 0.0015 30.4 9.0 44 98-150 2-45 (243)
66 PF00012 HSP70: Hsp70 protein; 56.9 23 0.00049 37.3 6.0 50 208-259 151-203 (602)
67 PRK13411 molecular chaperone D 54.3 39 0.00084 36.7 7.4 19 95-113 2-20 (653)
68 TIGR02350 prok_dnaK chaperone 52.5 25 0.00055 37.4 5.6 17 97-113 2-18 (595)
69 PRK03657 hypothetical protein; 51.9 56 0.0012 29.6 6.9 68 47-116 70-145 (170)
70 COG4972 PilM Tfp pilus assembl 51.9 87 0.0019 31.7 8.7 130 96-227 11-170 (354)
71 smart00842 FtsA Cell division 47.3 87 0.0019 28.0 7.4 57 97-158 1-59 (187)
72 TIGR01991 HscA Fe-S protein as 47.2 39 0.00084 36.3 6.0 16 98-113 2-17 (599)
73 TIGR00904 mreB cell shape dete 45.9 2.9E+02 0.0063 26.9 11.5 45 209-255 115-159 (333)
74 PRK13929 rod-share determining 45.7 2.4E+02 0.0052 27.7 10.9 46 210-257 116-161 (335)
75 TIGR02707 butyr_kinase butyrat 45.5 45 0.00098 33.5 5.8 55 97-159 2-60 (351)
76 PRK13322 pantothenate kinase; 45.0 77 0.0017 30.1 7.0 44 197-242 51-95 (246)
77 PF05402 PqqD: Coenzyme PQQ sy 41.2 68 0.0015 23.6 4.9 34 35-68 30-63 (68)
78 PF11104 PilM_2: Type IV pilus 40.3 1.1E+02 0.0024 30.0 7.6 60 99-160 1-60 (340)
79 PRK13411 molecular chaperone D 40.0 83 0.0018 34.2 7.2 24 93-116 184-207 (653)
80 TIGR03706 exo_poly_only exopol 38.4 1.2E+02 0.0026 29.4 7.4 62 97-158 2-65 (300)
81 PF11215 DUF3010: Protein of u 37.0 89 0.0019 27.5 5.5 60 97-160 3-62 (138)
82 KOG3127 Deoxycytidylate deamin 36.6 20 0.00043 34.0 1.5 26 232-257 73-106 (230)
83 PF02419 PsbL: PsbL protein; 36.6 29 0.00062 23.7 1.9 30 306-335 2-31 (37)
84 PRK00753 psbL photosystem II r 36.3 42 0.00091 23.1 2.6 31 306-336 4-34 (39)
85 PRK01433 hscA chaperone protei 35.5 90 0.002 33.6 6.5 19 95-113 19-37 (595)
86 COG5146 PanK Pantothenate kina 35.4 1E+02 0.0022 30.0 6.1 173 97-304 20-199 (342)
87 TIGR00987 himA integration hos 34.6 93 0.002 25.0 5.1 36 38-73 5-40 (96)
88 PF06295 DUF1043: Protein of u 34.2 1.3E+02 0.0028 25.7 6.1 21 10-30 3-23 (128)
89 PRK10753 transcriptional regul 34.1 98 0.0021 24.7 5.1 36 38-73 4-39 (90)
90 TIGR02350 prok_dnaK chaperone 33.6 1.2E+02 0.0027 32.2 7.2 23 94-116 182-204 (595)
91 PF00012 HSP70: Hsp70 protein; 33.5 91 0.002 32.8 6.1 24 93-116 186-209 (602)
92 PRK00285 ihfA integration host 33.5 99 0.0022 24.9 5.1 37 37-73 5-41 (99)
93 PRK13717 conjugal transfer pro 33.4 44 0.00096 29.0 3.0 36 36-72 55-90 (128)
94 PTZ00186 heat shock 70 kDa pre 33.1 1.2E+02 0.0027 33.1 7.1 23 94-116 211-233 (657)
95 COG3734 DgoK 2-keto-3-deoxy-ga 32.8 37 0.0008 33.5 2.8 22 94-115 4-25 (306)
96 PRK01433 hscA chaperone protei 32.8 91 0.002 33.6 6.0 24 93-116 191-214 (595)
97 CHL00038 psbL photosystem II p 32.7 48 0.001 22.7 2.5 32 306-337 3-34 (38)
98 smart00411 BHL bacterial (prok 32.7 1.1E+02 0.0024 23.8 5.1 36 38-73 4-39 (90)
99 PTZ00281 actin; Provisional 32.5 1.8E+02 0.0039 29.1 7.8 39 220-263 128-166 (376)
100 PRK11677 hypothetical protein; 32.0 1.3E+02 0.0028 26.3 5.8 19 9-27 6-24 (134)
101 PRK10854 exopolyphosphatase; P 31.8 1.9E+02 0.0041 30.5 8.1 62 96-157 12-75 (513)
102 PF00216 Bac_DNA_binding: Bact 31.6 1.1E+02 0.0023 23.8 4.9 36 38-73 4-39 (90)
103 PF14574 DUF4445: Domain of un 30.8 89 0.0019 32.3 5.3 18 98-115 4-21 (412)
104 PTZ00009 heat shock 70 kDa pro 30.7 1.3E+02 0.0029 32.6 6.9 23 94-116 193-215 (653)
105 PRK13410 molecular chaperone D 29.9 1.5E+02 0.0033 32.4 7.2 23 94-116 186-208 (668)
106 TIGR03123 one_C_unchar_1 proba 29.5 39 0.00085 33.6 2.4 20 94-113 127-146 (318)
107 PRK00290 dnaK molecular chaper 29.4 1.4E+02 0.0031 32.1 6.8 23 94-116 184-206 (627)
108 COG3105 Uncharacterized protei 29.2 95 0.002 27.2 4.3 61 11-72 13-84 (138)
109 smart00268 ACTIN Actin. ACTIN 28.3 2.8E+02 0.0061 27.3 8.3 39 220-263 122-160 (373)
110 PRK00109 Holliday junction res 28.2 2.3E+02 0.005 24.5 6.8 20 94-113 3-22 (138)
111 TIGR02529 EutJ ethanolamine ut 27.9 5.1E+02 0.011 24.2 10.0 27 209-237 78-104 (239)
112 CHL00094 dnaK heat shock prote 27.6 1.8E+02 0.0038 31.4 7.1 22 95-116 187-208 (621)
113 PRK10664 transcriptional regul 26.9 1.6E+02 0.0034 23.6 5.1 36 39-74 5-40 (90)
114 cd00591 HU_IHF Integration hos 26.6 1.5E+02 0.0032 22.8 4.8 35 38-72 3-37 (87)
115 COG1546 CinA Uncharacterized p 26.1 3E+02 0.0065 24.9 7.2 68 48-117 65-140 (162)
116 PF13941 MutL: MutL protein 26.1 81 0.0018 33.1 4.1 29 96-124 1-29 (457)
117 PLN03184 chloroplast Hsp70; Pr 25.9 1.7E+02 0.0038 31.9 6.8 23 94-116 223-245 (673)
118 PRK11031 guanosine pentaphosph 25.3 2.8E+02 0.006 29.2 7.9 62 96-157 7-70 (496)
119 PF01968 Hydantoinase_A: Hydan 24.0 74 0.0016 30.9 3.2 18 96-113 78-95 (290)
120 PF04459 DUF512: Protein of un 24.0 52 0.0011 30.7 2.0 28 203-230 104-135 (204)
121 PTZ00400 DnaK-type molecular c 23.3 1.7E+02 0.0036 32.0 6.0 21 96-116 227-247 (663)
122 PRK09472 ftsA cell division pr 23.1 3.2E+02 0.0069 27.9 7.7 59 96-157 9-67 (420)
123 PRK00199 ihfB integration host 22.4 2.2E+02 0.0047 22.7 5.1 36 38-73 4-40 (94)
124 PF03652 UPF0081: Uncharacteri 22.1 1.6E+02 0.0034 25.4 4.5 19 96-114 2-20 (135)
125 TIGR02744 TrbI_Ftype type-F co 22.0 1.5E+02 0.0032 25.2 4.2 50 37-86 39-93 (112)
126 TIGR00199 cinA_cterm competenc 21.5 4E+02 0.0087 23.3 7.0 55 47-102 52-114 (146)
127 cd01817 RGS12_RBD Ubiquitin do 21.4 97 0.0021 24.4 2.7 24 203-226 18-41 (73)
128 TIGR00555 panK_eukar pantothen 21.3 2.2E+02 0.0049 27.8 5.9 17 97-113 2-18 (279)
129 PF09907 DUF2136: Uncharacteri 20.6 1.1E+02 0.0024 24.0 3.0 20 95-114 36-56 (76)
130 TIGR00988 hip integration host 20.4 2.5E+02 0.0054 22.2 5.1 36 38-73 4-40 (94)
131 COG0443 DnaK Molecular chapero 20.3 3.8E+02 0.0083 28.8 7.9 144 95-254 5-180 (579)
132 PF02615 Ldh_2: Malate/L-lacta 20.2 1.2E+02 0.0026 30.4 3.8 70 33-105 4-75 (335)
No 1
>PLN02405 hexokinase
Probab=100.00 E-value=2.8e-111 Score=860.32 Aligned_cols=352 Identities=86% Similarity=1.306 Sum_probs=328.0
Q ss_pred CCceeeeeeehhhHHHHHHHHHHHhhhhcccchHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhcCCCCCccee
Q 018393 1 MGKVTVAATVVCAAAVCAAAALVVRRRMKSTGRWARAVAILKEMEEKCGTPIGKLRQVADAMTVEMHAGLASEGGSKLKM 80 (356)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~L~~i~~~f~~em~~gL~~~~~s~l~M 80 (356)
|+|+.++++++++|++|++++++++++.+++.+|..+.+++++++++|.+|.++|++|+++|..||++||+++++|+++|
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~f~~~~~~L~~v~~~f~~em~~GL~~~~~s~l~M 80 (497)
T PLN02405 1 MGKVAVGAAVVCAAAVCAAAALVVRRRMKSSGKWARAMEILKEFEEDCATPIGKLRQVADAMTVEMHAGLASEGGSKLKM 80 (497)
T ss_pred CCceeeehhhhhHHHHHHHHHHhhhcccccchhhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhhccCCCCCcce
Confidence 89988999999988889999999988888777888899999999999999999999999999999999999876689999
Q ss_pred eecccccCCCCCccccEEEEEeCCceeEEEEEEEcCCcceeEEEEeEeeccCccccccCchHHHHHHHHHHHHHHhhcCC
Q 018393 81 LISYVDNLPTGDEKGLFYALDLGGTNFRVLRVQLGGREGRVVKQEFEEVSIPPHLMTGSSHELFDYIAAALAKFVATEGE 160 (356)
Q Consensus 81 lPS~v~~lP~G~E~G~fLalDlGGTnlRv~~V~L~g~~~~~~~~~~~~~~Ip~~~~~~~~~~LFd~IA~~I~~fl~~~~~ 160 (356)
|||||+++|+|+|+|+|||||||||||||++|+|.|++..+..+.+++++||+++|.+++++||||||+||++|+++++.
T Consensus 81 lpSyv~~lPtG~E~G~flAlDlGGTNfRV~~V~L~g~~~~~~~~~~~~~~ip~~~~~gt~~~LFdfIA~~i~~fl~~~~~ 160 (497)
T PLN02405 81 LISYVDNLPSGDEKGLFYALDLGGTNFRVLRVLLGGKDGRVVKQEFEEVSIPPHLMTGSSDALFDFIAAALAKFVATEGE 160 (497)
T ss_pred eccccccCCCCCcceeEEEEecCCceEEEEEEEEcCCCCceeEEEEEEeecChhhccCCHHHHHHHHHHHHHHHHHhccc
Confidence 99999999999999999999999999999999999876666777778999999999999999999999999999998764
Q ss_pred CCCCCCCcceeeeeeeeeeeeeccCCceEEEeeccceecCCCCCCcHHHHHHHHHHHcCCCceEEEEEecchhhhhcccc
Q 018393 161 GFHVSPGRQRELGFTFSFPVRQTSIASGDLIKWTKGFSIEDTVGEDVVGELTKAMERIGLDMRVAALVNDTIGTLAGGRY 240 (356)
Q Consensus 161 ~~~~~~~~~l~lGfTFSFP~~q~~i~~g~Li~wtKgF~~~~v~G~dv~~lL~~al~r~~l~v~v~aivNDTVaTLla~~y 240 (356)
..+..+++.+||||||||||+|+++++|+|++|||||++++++|+||+++|++||+|++++|+|+||||||||||++++|
T Consensus 161 ~~~~~~~~~l~LGfTFSFPv~Qtsi~~g~Li~WTKGF~~~~~vG~DVv~lL~~Al~r~~l~v~v~AlvNDTVGTL~a~aY 240 (497)
T PLN02405 161 DFHLPPGRQRELGFTFSFPVKQTSISSGTLIKWTKGFSIDDAVGQDVVGELTKAMERVGLDMRVSALVNDTIGTLAGGRY 240 (497)
T ss_pred ccccCcccccccceeEeeeeccCCCCceEEEEeccccccCCccCchHHHHHHHHHHHcCCCceEEEEEecCHHHHHHhhc
Confidence 43223346799999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCceEEEEecccccceeecccCCCCCcCCCCCCCCcEEEEecCCCcCCCCCCCChhhHhhhccCCCCCCceeeehhcc
Q 018393 241 HNKDAIAAVILGTGTNAAYVERAHAIPKWHGLLPKSGEMVINMEWGNFRSSHLPLTEYDEALDTESLNPGEQIFEKIISG 320 (356)
Q Consensus 241 ~~~~~~iGlIlGTGtNacY~e~~~~I~k~~~~~~~~~~miINtEwG~Fg~~~lp~T~~D~~vD~~s~nPG~q~fEKmvSG 320 (356)
.+++|.||+|+|||||+||+|+.++|||+++..+..++||||||||+|+.+++|+|+||+.+|++|.|||+|+||||+||
T Consensus 241 ~~~~~~iG~IlGTGtNacY~E~~~~i~k~~~~~~~~~~miINtEwG~F~~~~lp~T~~D~~lD~~S~nPG~Q~fEKmiSG 320 (497)
T PLN02405 241 YNPDVVAAVILGTGTNAAYVERAQAIPKWHGLLPKSGEMVINMEWGNFRSSHLPLTEYDHALDVESLNPGEQIFEKIISG 320 (497)
T ss_pred CCCCceEEEEEeCCeeeEEEeecccCccccccCCCCCeEEEEeccccCCCCCCCCchHHHHHhhcCCCCCcchhhHHHhh
Confidence 99999999999999999999999999999875556788999999999998889999999999999999999999999999
Q ss_pred cchHHHHHHHHHHHHHccCCCCCccchhhcccc
Q 018393 321 MYLGEIVRRVLCRMAEEANFFGLLTCRLCITTH 353 (356)
Q Consensus 321 ~YLGEl~R~ill~l~~~~~lF~~~~~~~~~~~~ 353 (356)
||||||+|+||++|++++.||++..| ..|.+|
T Consensus 321 ~YLGEivRlvLl~l~~~~~lF~g~~~-~~L~~~ 352 (497)
T PLN02405 321 MYLGEILRRVLLKMAEEAAFFGDTVP-PKLKIP 352 (497)
T ss_pred ccHHHHHHHHHHHHHHhccccCCCCc-HhhcCC
Confidence 99999999999999999999999765 445554
No 2
>PLN02596 hexokinase-like
Probab=100.00 E-value=1.2e-109 Score=846.43 Aligned_cols=350 Identities=53% Similarity=0.864 Sum_probs=323.8
Q ss_pred CCceeeeeeehhhHHHHHHHHHHHhhhh-cccchHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhcCCCCCcce
Q 018393 1 MGKVTVAATVVCAAAVCAAAALVVRRRM-KSTGRWARAVAILKEMEEKCGTPIGKLRQVADAMTVEMHAGLASEGGSKLK 79 (356)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~~L~~i~~~f~~em~~gL~~~~~s~l~ 79 (356)
|+|+.+++++++++++|++| +++++|. +.+.+|+++++++++|+++|.+|.++|++|+++|.+||++||+.+++|+++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~f~~~~~~L~~i~~~f~~em~~GL~~~~~s~l~ 80 (490)
T PLN02596 2 MRKEVVVAATVATVAAVAAA-VLMGRWKRRKERQWKHTQRILRKFARECATPVSKLWEVADALVSDMTASLTAEETTTLN 80 (490)
T ss_pred CcceeeehhHHHHHHHHHHH-HHHHHHHHHhHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhhccCCCCCCc
Confidence 88999999999999989888 6777776 666799999999999999999999999999999999999999886668999
Q ss_pred eeecccccCCCCCccccEEEEEeCCceeEEEEEEEcCCcceeEEEEeEeeccCccccccCchHHHHHHHHHHHHHHhhcC
Q 018393 80 MLISYVDNLPTGDEKGLFYALDLGGTNFRVLRVQLGGREGRVVKQEFEEVSIPPHLMTGSSHELFDYIAAALAKFVATEG 159 (356)
Q Consensus 80 MlPS~v~~lP~G~E~G~fLalDlGGTnlRv~~V~L~g~~~~~~~~~~~~~~Ip~~~~~~~~~~LFd~IA~~I~~fl~~~~ 159 (356)
||||||+++|+|+|+|+|||||||||||||++|+|.|++..+.++.+++|+||++++.+++++||||||+||++|+++++
T Consensus 81 MlpTyv~~lPtG~E~G~yLAlDlGGTNfRV~~V~L~g~~~~~~~~~~~~~~Ip~~l~~~t~~eLFd~IA~~i~~fl~~~~ 160 (490)
T PLN02596 81 MLVSYVASLPSGDEKGLYYGLNLRGSNFLLLRARLGGKNEPISDLYREEISIPSNVLNGTSQELFDYIALELAKFVAEHP 160 (490)
T ss_pred eecccCCCCCCCCcceEEEEEeeCCceEEEEEEEEcCCCCceEEEEEEEecCChHhhcCCHHHHHHHHHHHHHHHHHhhc
Confidence 99999999999999999999999999999999999887655677777899999999999999999999999999999876
Q ss_pred CCCCCCCCcceeeeeeeeeeeeeccCCceEEEeeccceecCCCCCCcHHHHHHHHHHHcCCCceEEEEEecchhhhhccc
Q 018393 160 EGFHVSPGRQRELGFTFSFPVRQTSIASGDLIKWTKGFSIEDTVGEDVVGELTKAMERIGLDMRVAALVNDTIGTLAGGR 239 (356)
Q Consensus 160 ~~~~~~~~~~l~lGfTFSFP~~q~~i~~g~Li~wtKgF~~~~v~G~dv~~lL~~al~r~~l~v~v~aivNDTVaTLla~~ 239 (356)
......+++.+||||||||||+|+++++|+|++| |||++++++|+||+++|++|++|++++|+|+||+|||||||+|++
T Consensus 161 ~~~~~~~~~~l~lGfTFSFP~~Q~si~~G~Li~W-KgF~~~~~vG~Dvv~lL~~Al~r~~l~v~v~AivNDTVgTL~a~a 239 (490)
T PLN02596 161 GDEADTPERVKKLGFTVSYPVDQAAASSGSAIKW-KSFSADDTVGKALVNDINRALEKHGLKIRVFALVDDTIGNLAGGR 239 (490)
T ss_pred cccccCcccccccceEEeeeeeecCCCCEEEEEe-ccccCCCccCcHHHHHHHHHHHhcCCCceEEEEEEcCHHHHHhhh
Confidence 5432223467999999999999999999999999 999999999999999999999999999999999999999999999
Q ss_pred ccCCCceEEEEecccccceeecccCCCCCcCCCCCCCCcEEEEecCCCcCCCCCCCChhhHhhhccCCCCCCceeeehhc
Q 018393 240 YHNKDAIAAVILGTGTNAAYVERAHAIPKWHGLLPKSGEMVINMEWGNFRSSHLPLTEYDEALDTESLNPGEQIFEKIIS 319 (356)
Q Consensus 240 y~~~~~~iGlIlGTGtNacY~e~~~~I~k~~~~~~~~~~miINtEwG~Fg~~~lp~T~~D~~vD~~s~nPG~q~fEKmvS 319 (356)
|.+++|+||+|+|||||+||+|++++|+|+++..+..++||||||||+|+...+|+|+||+.+|++|.|||+|+||||+|
T Consensus 240 Y~~~~~~iG~I~GTGtNacY~E~~~~i~k~~~~~~~~~~miINtEwG~F~~~~lp~T~~D~~lD~~S~nPG~Q~fEKMiS 319 (490)
T PLN02596 240 YYNKDTVAAVTLGMGTNAAYVEPAQAIPKWQSPSPESQEIVISTEWGNFNSCHLPITEFDASLDAESSNPGSRIFEKLTS 319 (490)
T ss_pred cCCCCeEEEEEEecccceEEEEEccccccccCCCCCCCeEEEEeccccCCCCCCCCChHHHHHhccCCCCCcchHHHHHh
Confidence 99999999999999999999999999999987556678999999999998778999999999999999999999999999
Q ss_pred ccchHHHHHHHHHHHHHccCCCCCccchhhcccc
Q 018393 320 GMYLGEIVRRVLCRMAEEANFFGLLTCRLCITTH 353 (356)
Q Consensus 320 G~YLGEl~R~ill~l~~~~~lF~~~~~~~~~~~~ 353 (356)
|||||||+|+||++|++++.||++..+ ..|.+|
T Consensus 320 G~YLGElvRlvl~~l~~~~~lF~~~~~-~~L~~~ 352 (490)
T PLN02596 320 GMYLGEIVRRVLLKMAEETALFGDTLP-PKLTTP 352 (490)
T ss_pred hhhHHHHHHHHHHHHHHhccccCCCCc-HhhcCC
Confidence 999999999999999999999999765 445554
No 3
>PLN02362 hexokinase
Probab=100.00 E-value=2.1e-109 Score=848.50 Aligned_cols=351 Identities=63% Similarity=1.001 Sum_probs=324.3
Q ss_pred CCceeeeeeehhhHHHHHHHHHHHhhhhcccchHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhcCCCCCccee
Q 018393 1 MGKVTVAATVVCAAAVCAAAALVVRRRMKSTGRWARAVAILKEMEEKCGTPIGKLRQVADAMTVEMHAGLASEGGSKLKM 80 (356)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~L~~i~~~f~~em~~gL~~~~~s~l~M 80 (356)
|+|++++++++++++++++++++++++.+...+|+++++++++|+++|.+|.++|++|+++|.+||++||++++.|+++|
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~f~~~~~~L~~v~~~f~~em~~GL~~~~~s~l~M 80 (509)
T PLN02362 1 MGKVAVGLAAAAAVAACAVAAVMVGRRVKSRRKWRRVVGVLKELEEACETPVGRLRQVVDAMAVEMHAGLASEGGSKLKM 80 (509)
T ss_pred CCceeeehhhhHHHHHHHHHHHhhhcccccchhhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhhccCCCCCCce
Confidence 89988999999988888899888888888777888899999999999999999999999999999999999865689999
Q ss_pred eecccccCCCCCccccEEEEEeCCceeEEEEEEEcCCcceeEEEEeEeeccCccccccCchHHHHHHHHHHHHHHhhcCC
Q 018393 81 LISYVDNLPTGDEKGLFYALDLGGTNFRVLRVQLGGREGRVVKQEFEEVSIPPHLMTGSSHELFDYIAAALAKFVATEGE 160 (356)
Q Consensus 81 lPS~v~~lP~G~E~G~fLalDlGGTnlRv~~V~L~g~~~~~~~~~~~~~~Ip~~~~~~~~~~LFd~IA~~I~~fl~~~~~ 160 (356)
|||||+++|+|+|+|+|||||||||||||++|+|.|++.....++.++|+||++++.+++++||||||+||++|+++++.
T Consensus 81 lPTyv~~lPtG~E~G~fLAlDlGGTNfRV~~V~L~g~~~~~~~~~~~~~~Ip~~l~~~~~~eLFd~IA~~i~~fl~~~~~ 160 (509)
T PLN02362 81 LLTFVDDLPTGSEIGTYYALDLGGTNFRVLRVQLGGQRSSILSQDVERHPIPQHLMNSTSEVLFDFIASSLKQFVEKEEN 160 (509)
T ss_pred ecCccCCCCCCCcceeEEEEecCCceEEEEEEEecCCCcceeeceeEEEecChhhccCCHHHHHHHHHHHHHHHHHhcCc
Confidence 99999999999999999999999999999999999877666656667899999999999999999999999999998765
Q ss_pred CCCCCCCcceeeeeeeeeeeeeccCCceEEEeeccceecCCCCCCcHHHHHHHHHHHcCCCceEEEEEecchhhhhcccc
Q 018393 161 GFHVSPGRQRELGFTFSFPVRQTSIASGDLIKWTKGFSIEDTVGEDVVGELTKAMERIGLDMRVAALVNDTIGTLAGGRY 240 (356)
Q Consensus 161 ~~~~~~~~~l~lGfTFSFP~~q~~i~~g~Li~wtKgF~~~~v~G~dv~~lL~~al~r~~l~v~v~aivNDTVaTLla~~y 240 (356)
..+...++.+||||||||||+|+++++|+|++|||||++++++|+||+++|++||+|++++|+|+||||||||||+|++|
T Consensus 161 ~~~~~~~~~l~LGfTFSFPv~Q~si~~g~Li~WtKGF~~~~v~G~DVv~lL~~Al~r~~l~v~v~AlvNDTVgTL~a~aY 240 (509)
T PLN02362 161 GSEFSQVRRRELGFTFSFPVKQTSISSGILIKWTKGFAISDMVGKDVAECLQGALNRRGLDMRVAALVNDTVGTLALGHY 240 (509)
T ss_pred cccccccccccceeEEeeeeccCCCCceEEEEeccccccCcccCchHHHHHHHHHHHcCCCcEEEEEEEcCHHHHHhhhc
Confidence 32222246799999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCceEEEEecccccceeecccCCCCCcCCCCCCCCcEEEEecCCCcCCCCCCCChhhHhhhccCCCCCCceeeehhcc
Q 018393 241 HNKDAIAAVILGTGTNAAYVERAHAIPKWHGLLPKSGEMVINMEWGNFRSSHLPLTEYDEALDTESLNPGEQIFEKIISG 320 (356)
Q Consensus 241 ~~~~~~iGlIlGTGtNacY~e~~~~I~k~~~~~~~~~~miINtEwG~Fg~~~lp~T~~D~~vD~~s~nPG~q~fEKmvSG 320 (356)
.+|+|.||+|+|||||+||+|+.++|+|+++..+..++||||||||+|+.+++|+|+||..+|.+|.|||+|+|||||||
T Consensus 241 ~~~~~~iG~IlGTGtNacY~E~~~~i~k~~~~~~~~~~miINtEwG~F~~~~lp~T~~D~~lD~~S~nPG~Q~fEKmiSG 320 (509)
T PLN02362 241 HDPDTVAAVIIGTGTNACYLERTDAIIKCQGLLTTSGSMVVNMEWGNFWSSHLPRTSYDIDLDAESPNPNDQGFEKMISG 320 (509)
T ss_pred CCCCceEEEEEECCccceEeeehhhcccccccCCCCCcEEEEeeccCCCCCCCCCchHHHHHhcCCCCcCcchHHHHHhh
Confidence 99999999999999999999999999999875556778999999999998889999999999999999999999999999
Q ss_pred cchHHHHHHHHHHHHHccCCCCCccchhhcccc
Q 018393 321 MYLGEIVRRVLCRMAEEANFFGLLTCRLCITTH 353 (356)
Q Consensus 321 ~YLGEl~R~ill~l~~~~~lF~~~~~~~~~~~~ 353 (356)
||||||+|+||++|++++.||++. + ..|.+|
T Consensus 321 ~YLGEivRlvL~~l~~~~~lF~~~-~-~~L~~~ 351 (509)
T PLN02362 321 MYLGDIVRRVILRMSQESDIFGPV-S-SRLSTP 351 (509)
T ss_pred ccHHHHHHHHHHHHHhccccccCC-c-HhhcCC
Confidence 999999999999999999999863 2 335554
No 4
>PLN02914 hexokinase
Probab=100.00 E-value=5.1e-105 Score=812.46 Aligned_cols=317 Identities=63% Similarity=1.045 Sum_probs=294.4
Q ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhcCCCCCcceeeecccccCCCCCccccEEEEEeCCceeEEEEEEEc
Q 018393 36 RAVAILKEMEEKCGTPIGKLRQVADAMTVEMHAGLASEGGSKLKMLISYVDNLPTGDEKGLFYALDLGGTNFRVLRVQLG 115 (356)
Q Consensus 36 ~~~~~l~~~~~~~~~~~~~L~~i~~~f~~em~~gL~~~~~s~l~MlPS~v~~lP~G~E~G~fLalDlGGTnlRv~~V~L~ 115 (356)
++.+++++|+++|.+|.++|++|+++|.+||++||++++.|+++||||||+++|+|+|+|+|||||||||||||++|+|.
T Consensus 36 ~~~~~~~~~~~~f~~~~~~L~~i~~~f~~em~~GL~~~~~s~l~MlpTyv~~lPtG~E~G~fLAlDlGGTNfRV~~V~L~ 115 (490)
T PLN02914 36 SVAPILTKLQKDCATPLPVLRHVADAMAADMRAGLAVDGGGDLKMILSYVDSLPSGNEKGLFYALDLGGTNFRVLRVQLG 115 (490)
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHhccCCCCCcceeccccCCCCCCCeeeEEEEEecCCceEEEEEEEec
Confidence 68889999999999999999999999999999999986558899999999999999999999999999999999999998
Q ss_pred CCcceeEEEEeEeeccCccccccCchHHHHHHHHHHHHHHhhcCCCCCCCCCcceeeeeeeeeeeeeccCCceEEEeecc
Q 018393 116 GREGRVVKQEFEEVSIPPHLMTGSSHELFDYIAAALAKFVATEGEGFHVSPGRQRELGFTFSFPVRQTSIASGDLIKWTK 195 (356)
Q Consensus 116 g~~~~~~~~~~~~~~Ip~~~~~~~~~~LFd~IA~~I~~fl~~~~~~~~~~~~~~l~lGfTFSFP~~q~~i~~g~Li~wtK 195 (356)
|++..+..+.+++++||++++.+++++||||||+||++|++++....+.+.++.+||||||||||+|+++++|+|++|||
T Consensus 116 g~~~~~~~~~~~~~~ip~~l~~gt~~eLFdfIA~~i~~fl~~~~~~~~~~~~~~l~LGfTFSFP~~Q~si~~g~Li~WTK 195 (490)
T PLN02914 116 GKDERVIATEFEQVSIPQELMFGTSEELFDFIASGLANFVAKEGGKFHLPEGRKREIGFTFSFPVKQTSIDSGILMKWTK 195 (490)
T ss_pred CCCCceeeeeEEEecCChhhccCCHHHHHHHHHHHHHHHHHhccccccCCccccccceeeEeeeeecCCCCceEEEEecc
Confidence 87666667777899999999999999999999999999999876433223346799999999999999999999999999
Q ss_pred ceecCCCCCCcHHHHHHHHHHHcCCCceEEEEEecchhhhhcccccCCCceEEEEecccccceeecccCCCCCcCCCCCC
Q 018393 196 GFSIEDTVGEDVVGELTKAMERIGLDMRVAALVNDTIGTLAGGRYHNKDAIAAVILGTGTNAAYVERAHAIPKWHGLLPK 275 (356)
Q Consensus 196 gF~~~~v~G~dv~~lL~~al~r~~l~v~v~aivNDTVaTLla~~y~~~~~~iGlIlGTGtNacY~e~~~~I~k~~~~~~~ 275 (356)
||++++++|+||+++|++||+|++++|+|+||||||||||++++|.+++|.||+|+|||||+||+|++++|||+++..+.
T Consensus 196 GF~~~gv~G~DVv~lL~~Al~r~~l~v~v~AivNDTVGTL~a~aY~~~~~~iGlIlGTGtNacY~E~~~~i~k~~~~~~~ 275 (490)
T PLN02914 196 GFAVSGTAGKDVVACLNEAMERQGLDMRVSALVNDTVGTLAGARYWDDDVMVAVILGTGTNACYVERTDAIPKLQGQKSS 275 (490)
T ss_pred ccccCCccCchHHHHHHHHHHHcCCCceEEEEEEcCHHHHHhhhcCCCCceEEEEEECCeeeEEEeecccccccccCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999875555
Q ss_pred CCcEEEEecCCCcCCCCCCCChhhHhhhccCCCCCCceeeehhcccchHHHHHHHHHHHHHccCCCCCccchhhccccc
Q 018393 276 SGEMVINMEWGNFRSSHLPLTEYDEALDTESLNPGEQIFEKIISGMYLGEIVRRVLCRMAEEANFFGLLTCRLCITTHL 354 (356)
Q Consensus 276 ~~~miINtEwG~Fg~~~lp~T~~D~~vD~~s~nPG~q~fEKmvSG~YLGEl~R~ill~l~~~~~lF~~~~~~~~~~~~~ 354 (356)
.++||||||||+|+ +++|+|+||+.+|++|.|||+|+||||+||||||||+|+||++|++++.||++..+ ..|.+|.
T Consensus 276 ~~~miINtEwG~F~-~~lp~T~~D~~lD~~S~nPG~Q~fEKmiSG~YLGEivRlvLl~l~~~~~lF~~~~~-~~L~~~~ 352 (490)
T PLN02914 276 SGRTIINTEWGAFS-DGLPLTEFDREMDAASINPGEQIFEKTISGMYLGEIVRRVLLKMAETSDLFGHFVP-EKLSTPF 352 (490)
T ss_pred CceEEEeccccccC-CCCCCChHHHHHhhCCCCCCcchhhhHHhhhhHHHHHHHHHHHHHHhcccccCCCc-HhhcCCC
Confidence 67899999999996 57999999999999999999999999999999999999999999999999998655 4555553
No 5
>KOG1369 consensus Hexokinase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=3e-97 Score=747.01 Aligned_cols=314 Identities=50% Similarity=0.738 Sum_probs=290.3
Q ss_pred hhhcccchHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhcCCCC-CcceeeecccccCCCCCccccEEEEEeCC
Q 018393 26 RRMKSTGRWARAVAILKEMEEKCGTPIGKLRQVADAMTVEMHAGLASEGG-SKLKMLISYVDNLPTGDEKGLFYALDLGG 104 (356)
Q Consensus 26 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~L~~i~~~f~~em~~gL~~~~~-s~l~MlPS~v~~lP~G~E~G~fLalDlGG 104 (356)
++...+.+++.+.++++++++.|.+|.++|++|+++|.+||++||+...+ +.++|+||||.++|+|+|+|+||||||||
T Consensus 16 ~~~~~~~~~~~~~~~l~~~~~~f~l~~~~L~~v~~~~~~em~~gL~~~~~g~~~~mlpt~V~~lP~G~E~G~~lalDLGG 95 (474)
T KOG1369|consen 16 MVTAVASRLAAVSRQLEELLALFQLPDEQLREVVDAFREEMERGLAKKTHGSAVKMLPTYVPDLPDGTEKGKFLALDLGG 95 (474)
T ss_pred hhhhhhhhhhhHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhhhhccCCCcccccchhhcccCCCCCcCCCEEEEecCC
Confidence 33334456778899999999999999999999999999999999995543 34999999999999999999999999999
Q ss_pred ceeEEEEEEEcCCcceeEEEEeEeeccCccccccCchHHHHHHHHHHHHHHhhcCCCCCCCCCcceeeeeeeeeeeeecc
Q 018393 105 TNFRVLRVQLGGREGRVVKQEFEEVSIPPHLMTGSSHELFDYIAAALAKFVATEGEGFHVSPGRQRELGFTFSFPVRQTS 184 (356)
Q Consensus 105 TnlRv~~V~L~g~~~~~~~~~~~~~~Ip~~~~~~~~~~LFd~IA~~I~~fl~~~~~~~~~~~~~~l~lGfTFSFP~~q~~ 184 (356)
|||||++|+|.|++. .+.+..++|+||+++|.+++++||||||+|+++|+++++... ..++|+||||||||+|++
T Consensus 96 Tn~Rv~~v~L~g~~~-~~~~~~~~~~ip~~~m~gt~~~Lfd~Ia~~l~~F~~~~~~~~----~~~l~lgFTFSfP~~Q~s 170 (474)
T KOG1369|consen 96 TNFRVLLVKLGGGRT-SVRMYNKIYAIPEEIMQGTGEELFDFIARCLADFLDKMGLKG----ASKLPLGFTFSFPCRQTS 170 (474)
T ss_pred CceEEEEEEecCCcc-cceeeeeeEecCHHHHcCchHHHHHHHHHHHHHHHHHhcccc----ccccccceEEeeeeeecc
Confidence 999999999988765 566677899999999999999999999999999999987642 122999999999999999
Q ss_pred CCceEEEeeccceecCCCCCCcHHHHHHHHHHHcCCC-ceEEEEEecchhhhhcccccCCCceEEEEecccccceeeccc
Q 018393 185 IASGDLIKWTKGFSIEDTVGEDVVGELTKAMERIGLD-MRVAALVNDTIGTLAGGRYHNKDAIAAVILGTGTNAAYVERA 263 (356)
Q Consensus 185 i~~g~Li~wtKgF~~~~v~G~dv~~lL~~al~r~~l~-v~v~aivNDTVaTLla~~y~~~~~~iGlIlGTGtNacY~e~~ 263 (356)
+++|+|++|||||++++++|+|++++|++||+|++++ ++|+|++|||||||++|+|.+++|.||+|+|||||+||+|+.
T Consensus 171 i~~g~L~~wTkGf~~~~~~g~Dvv~~L~eal~rr~~~~i~V~AlvNDTvGtl~~~~y~~~~~~igvI~GTGtNacY~e~~ 250 (474)
T KOG1369|consen 171 IDKGTLIRWTKGFKATDCEGEDVVRLLREAIKRRGLFDMDVVAVVNDTVGTLMTCAYEDPNCEIGVIFGTGTNACYMEDM 250 (474)
T ss_pred cccceEEEecccccchhhhcchHHHHHHHHHHHcCCcceEEEEEEecCHHhHhhceecCCCcEEEEEECCCccceeeeec
Confidence 9999999999999999999999999999999999997 999999999999999999999999999999999999999999
Q ss_pred CCCCCcCCCCCCCCcEEEEecCCCcCCC--CCCCChhhHhhhccCCCCCCceeeehhcccchHHHHHHHHHHHHHccCCC
Q 018393 264 HAIPKWHGLLPKSGEMVINMEWGNFRSS--HLPLTEYDEALDTESLNPGEQIFEKIISGMYLGEIVRRVLCRMAEEANFF 341 (356)
Q Consensus 264 ~~I~k~~~~~~~~~~miINtEwG~Fg~~--~lp~T~~D~~vD~~s~nPG~q~fEKmvSG~YLGEl~R~ill~l~~~~~lF 341 (356)
++|+|+++..... +||||||||+||++ .+|+|+||..+|++|+|||+|.||||+||||||||||++|+++++++.||
T Consensus 251 ~~i~k~~~~~~~~-~miIN~EWG~F~~~~~~l~~T~yD~~vD~eS~npG~~~~EKmisGmYLGEivR~vLl~m~~~~~lf 329 (474)
T KOG1369|consen 251 RNIEKVEGDAGRG-PMCINTEWGAFGDNSLDLPRTEYDVVVDEESLNPGKQLFEKMISGMYLGEIVRLVLLDLLEEGLLF 329 (474)
T ss_pred cchhhcccccCCC-ceEEEccccCCCccccccchhhHHHHHhhhcCCcchhHHHHHhccccHHHHHHHHHHHHhHhhhhh
Confidence 9999999854433 89999999999944 58999999999999999999999999999999999999999999999999
Q ss_pred CCcc
Q 018393 342 GLLT 345 (356)
Q Consensus 342 ~~~~ 345 (356)
++..
T Consensus 330 ~~~~ 333 (474)
T KOG1369|consen 330 GGQS 333 (474)
T ss_pred cccc
Confidence 9986
No 6
>PTZ00107 hexokinase; Provisional
Probab=100.00 E-value=4.6e-95 Score=737.38 Aligned_cols=294 Identities=38% Similarity=0.609 Sum_probs=266.1
Q ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhcCC---------CCCcceeeecccccCCCCCccccEEEEEeCCc
Q 018393 35 ARAVAILKEMEEKCGTPIGKLRQVADAMTVEMHAGLASE---------GGSKLKMLISYVDNLPTGDEKGLFYALDLGGT 105 (356)
Q Consensus 35 ~~~~~~l~~~~~~~~~~~~~L~~i~~~f~~em~~gL~~~---------~~s~l~MlPS~v~~lP~G~E~G~fLalDlGGT 105 (356)
.+.++.++++.++|.++.++|++|+++|.+||++||+++ +.|+++||||||+++|+|+|+|+|||||||||
T Consensus 5 ~~~~~~~~~~~~~f~~~~~~L~~i~~~f~~em~~GL~~~~~~~~~~~~~~s~l~Mlps~v~~lPtG~E~G~fLAlDlGGT 84 (464)
T PTZ00107 5 IKQRVRLASLVNQFTMSKEKLKELVDYFLYELVEGLEAHRRHRNLWIPNECSFKMLDSCVYNLPTGKEKGVYYAIDFGGT 84 (464)
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhhcccccccccCCCCCCccccccccCCCCCCCccceEEEEecCCc
Confidence 345667888888888999999999999999999999875 24789999999999999999999999999999
Q ss_pred eeEEEEEEEcCCcceeEEEEeEeeccCcccccc---------CchHHHHHHHHHHHHHHhhcCCCCCCCCCcceeeeeee
Q 018393 106 NFRVLRVQLGGREGRVVKQEFEEVSIPPHLMTG---------SSHELFDYIAAALAKFVATEGEGFHVSPGRQRELGFTF 176 (356)
Q Consensus 106 nlRv~~V~L~g~~~~~~~~~~~~~~Ip~~~~~~---------~~~~LFd~IA~~I~~fl~~~~~~~~~~~~~~l~lGfTF 176 (356)
||||++|+|.|++. ....++++.||++++.+ ++++||||||+||.+|++++.... ...+.+||||||
T Consensus 85 N~RV~~V~L~g~~~--~~~~~~~~~ip~~~~~~~~~~~~k~~t~~~lFd~IA~~i~~fl~~~~~~~--~~~~~l~lGfTF 160 (464)
T PTZ00107 85 NFRAVRVSLRGGGK--MERTQSKFSLPKSALLGEKGLLDKKATATDLFDHIAKSIKKMMEENGDPE--DLNKPVPVGFTF 160 (464)
T ss_pred eEEEEEEEeCCCCc--eeeEEEEEeCCHHHhccccccccccCCHHHHHHHHHHHHHHHHHhccccc--cccccccceeEE
Confidence 99999999987653 33445689999999988 899999999999999999876311 123579999999
Q ss_pred eeeeeeccCCceEEEeeccceec-----CCCCCCcHHHHHHHHHHHcCCCceEEEEEecchhhhhcccccC----CCceE
Q 018393 177 SFPVRQTSIASGDLIKWTKGFSI-----EDTVGEDVVGELTKAMERIGLDMRVAALVNDTIGTLAGGRYHN----KDAIA 247 (356)
Q Consensus 177 SFP~~q~~i~~g~Li~wtKgF~~-----~~v~G~dv~~lL~~al~r~~l~v~v~aivNDTVaTLla~~y~~----~~~~i 247 (356)
||||+|+++++|+|++|||||++ ++++|+||+++|++||+|++++|+|+||||||||||+|++|.+ ++|+|
T Consensus 161 SFP~~Q~si~~g~Li~WtKGF~~~~~~~~~v~G~DV~~lL~~Al~r~~l~v~v~AivNDTVgTL~a~ay~~~~~~~~~~i 240 (464)
T PTZ00107 161 SFPCTQLSVNNAILIDWTKGFETGRATNDPVEGKDVGELLNDAFKRNNVPANVVAVLNDTVGTLISCAYQKPKNTPPCQV 240 (464)
T ss_pred eeeeecccCCceEEEEeccceeeccCCCCCccCchHHHHHHHHHHHcCCCceEEEEEEcCHHHHHHHHhcCcCCCCCceE
Confidence 99999999999999999999999 9999999999999999999999999999999999999999999 99999
Q ss_pred EEEecccccceeecccCCCCCcCCCCCCCCcEEEEecCCCcCCCCCCCChhhHhhhccCCCCCCceeeehhcccchHHHH
Q 018393 248 AVILGTGTNAAYVERAHAIPKWHGLLPKSGEMVINMEWGNFRSSHLPLTEYDEALDTESLNPGEQIFEKIISGMYLGEIV 327 (356)
Q Consensus 248 GlIlGTGtNacY~e~~~~I~k~~~~~~~~~~miINtEwG~Fg~~~lp~T~~D~~vD~~s~nPG~q~fEKmvSG~YLGEl~ 327 (356)
|+|+|||||+||+|+.... +....||||||||+|| +.+|+|+||+.+|+.|.|||+|+||||+||||||||+
T Consensus 241 GlIlGTG~NacY~E~~~~~-------~~~~~~iINtEwG~F~-~~lp~T~~D~~lD~~S~npg~Q~fEKmiSG~YLGEi~ 312 (464)
T PTZ00107 241 GVIIGTGSNACYFEPEVSA-------YGYAGTPINMECGNFD-SKLPITPYDLEMDWYTPNRGRQQFEKMISGAYLGEIS 312 (464)
T ss_pred EEEEeccccceeeehhhcc-------CCCCcEEEEeeccccC-CCCCCChHHHHHhhcCCCCCcCchhhHHhhhhHHHHH
Confidence 9999999999999965332 2345799999999996 4599999999999999999999999999999999999
Q ss_pred HHHHHHHHHccCC
Q 018393 328 RRVLCRMAEEANF 340 (356)
Q Consensus 328 R~ill~l~~~~~l 340 (356)
|+||++|++++..
T Consensus 313 Rlvl~~l~~~~~~ 325 (464)
T PTZ00107 313 RRLIVHLLQLKAP 325 (464)
T ss_pred HHHHHHHHhcCCc
Confidence 9999999988753
No 7
>COG5026 Hexokinase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=1.4e-85 Score=648.79 Aligned_cols=316 Identities=42% Similarity=0.662 Sum_probs=289.1
Q ss_pred hHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhcCCCCCcceeeecccccCCCCCccccEEEEEeCCceeEEEEE
Q 018393 33 RWARAVAILKEMEEKCGTPIGKLRQVADAMTVEMHAGLASEGGSKLKMLISYVDNLPTGDEKGLFYALDLGGTNFRVLRV 112 (356)
Q Consensus 33 ~~~~~~~~l~~~~~~~~~~~~~L~~i~~~f~~em~~gL~~~~~s~l~MlPS~v~~lP~G~E~G~fLalDlGGTnlRv~~V 112 (356)
-|..+++.+.++++.|.+|.|+|.++.+.|.+||++||+...++.++|+|+||...|+|+|+|+||||||||||||||+|
T Consensus 13 ~~~~l~~~~~~~~~~~~~p~e~l~~v~~~Fieel~kgL~~~~G~~l~MIP~~v~~~p~g~e~g~~LaiD~GGTnlRvc~V 92 (466)
T COG5026 13 VEAALEQAVEELVESFTVPTEDLREVVKAFIEELEKGLQPKSGDFLPMIPTWVAPLPTGNESGSVLAIDLGGTNLRVCLV 92 (466)
T ss_pred ccHHHHHHHHHHhhcccCCHHHHHHHHHHHHHHHHhccCCCCCCccccccccccCCCCCCCCCCEEEEecCCceEEEEEE
Confidence 57788999999999999999999999999999999999954334499999999999999999999999999999999999
Q ss_pred EEcCCcceeEEEEeEeeccCcccccc-CchHHHHHHHHHHHHHHhhcCCCCCCCCCcceeeeeeeeeeeeeccCCceEEE
Q 018393 113 QLGGREGRVVKQEFEEVSIPPHLMTG-SSHELFDYIAAALAKFVATEGEGFHVSPGRQRELGFTFSFPVRQTSIASGDLI 191 (356)
Q Consensus 113 ~L~g~~~~~~~~~~~~~~Ip~~~~~~-~~~~LFd~IA~~I~~fl~~~~~~~~~~~~~~l~lGfTFSFP~~q~~i~~g~Li 191 (356)
+|.|++.....+. ++.+|.+..+. +.++||+|||++++.|+++++... ...++++|||||||++|+++++|.|+
T Consensus 93 ~l~g~gt~~~~~s--ks~lp~e~~~~~~~~~l~~~iadrl~~fi~~~~~~~---~~~~l~~gfTFSYP~~q~sin~g~l~ 167 (466)
T COG5026 93 VLGGDGTFDIEQS--KSFLPVECRDSESRDELFGFIADRLAAFIKEQHPSG---YGSKLPIGFTFSYPLNQTSINEGQLI 167 (466)
T ss_pred EeCCCCCcccccC--cccCchhhccCCChHHHHHHHHHHHHHHHHHhCchh---ccCcceeeEEEeccccccccCceeeE
Confidence 9998887655543 34499999877 899999999999999999987643 24689999999999999999999999
Q ss_pred eeccceecCCCCCCcHHHHHHHHHHHcCCCceEEEEEecchhhhhcccccCCCceEEEEecccccceeecccCCCCCcCC
Q 018393 192 KWTKGFSIEDTVGEDVVGELTKAMERIGLDMRVAALVNDTIGTLAGGRYHNKDAIAAVILGTGTNAAYVERAHAIPKWHG 271 (356)
Q Consensus 192 ~wtKgF~~~~v~G~dv~~lL~~al~r~~l~v~v~aivNDTVaTLla~~y~~~~~~iGlIlGTGtNacY~e~~~~I~k~~~ 271 (356)
+|||||++++++|+||+++|+++|+++++|++|+||+|||||||||+.|.++++.||+|+|||||+||+|+.+.|||++.
T Consensus 168 rwTKgf~i~e~ig~dvv~~l~e~l~~r~~pi~v~aviNDttgtlla~~yt~~~~~iG~IfGTGtN~~y~e~~~~ipkl~~ 247 (466)
T COG5026 168 RWTKGFDIPEVIGTDVVRLLQEALSARNLPIRVVAVINDTTGTLLASVYTSSETIIGIIFGTGTNGCYCEPKGRIPKLPR 247 (466)
T ss_pred eecccCcchhhhhhhHHHHHHHHHHhcCCceEEEEEecccHHHHHHHhhcCCCCeEEEEEecCccceEEeecccCCcCcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999985
Q ss_pred C-CCCCCcEEEEecCCCcCCCC--CCCChhhHhhhccCCCCCCceeeehhcccchHHHHHHHHHHHHHccCCCCCccchh
Q 018393 272 L-LPKSGEMVINMEWGNFRSSH--LPLTEYDEALDTESLNPGEQIFEKIISGMYLGEIVRRVLCRMAEEANFFGLLTCRL 348 (356)
Q Consensus 272 ~-~~~~~~miINtEwG~Fg~~~--lp~T~~D~~vD~~s~nPG~q~fEKmvSG~YLGEl~R~ill~l~~~~~lF~~~~~~~ 348 (356)
. .+...+|+||+|||+|++.+ +|+|+||..+|.+|++||.|.||||+||+|||||+|++|++++.+|.+|.++.+ .
T Consensus 248 d~~~~~~pm~iN~EwGsfdn~~~~Lp~t~ydv~idq~s~~pg~~~~Ek~~sG~yLGellr~~L~~l~~qg~~~~~q~~-~ 326 (466)
T COG5026 248 DDLPETGPMLINCEWGSFDNELSVLPRTKYDVLIDQESPNPGHQIFEKMSSGMYLGELLRLILRNLYEQGLIFNGQDP-E 326 (466)
T ss_pred ccccccCCeEEEecccccCcceeeccccceeeeeccCCCCcchHHHhhhhcceeHHHHHHHHHHHHHHHHhhccccch-h
Confidence 3 35667899999999998665 999999999999999999999999999999999999999999999999997655 4
Q ss_pred hccccc
Q 018393 349 CITTHL 354 (356)
Q Consensus 349 ~~~~~~ 354 (356)
.+..|.
T Consensus 327 ~~~~p~ 332 (466)
T COG5026 327 KLTDPF 332 (466)
T ss_pred hcccce
Confidence 444554
No 8
>PF00349 Hexokinase_1: Hexokinase; InterPro: IPR022672 Hexokinase is an important enzyme that catalyses the ATP-dependent conversion of aldo- and keto-hexose sugars to the hexose-6-phosphate (H6P). The enzyme can catalyse this reaction on glucose, fructose, sorbitol and glucosamine, and as such is the first step in a number of metabolic pathways []. The addition of a phosphate group to the sugar acts to trap it in a cell, since the negatively charged phosphate cannot easily traverse the plasma membrane. The enzyme is widely distributed in eukaryotes. There are three isozymes of hexokinase in yeast (PI, PII and glucokinase): isozymes PI and PII phosphorylate both aldo- and keto-sugars; glucokinase is specific for aldo-hexoses. All three isozymes contain two domains []. Structural studies of yeast hexokinase reveal a well-defined catalytic pocket that binds ATP and hexose, allowing easy transfer of the phosphate from ATP to the sugar []. Vertebrates contain four hexokinase isozymes, designated I to IV, where types I to III contain a duplication of the two-domain yeast-type hexokinases. Both the N- and C-terminal halves bind hexose and H6P, though in types I an III only the C-terminal half supports catalysis, while both halves support catalysis in type II. The N-terminal half is the regulatory region. Type IV hexokinase is similar to the yeast enzyme in containing only the two domains, and is sometimes incorrectly referred to as glucokinase. The different vertebrate isozymes differ in their catalysis, localisation and regulation, thereby contributing to the different patterns of glucose metabolism in different tissues []. Whereas types I to III can phosphorylate a variety of hexose sugars and are inhibited by glucose-6-phosphate (G6P), type IV is specific for glucose and shows no G6P inhibition. Type I enzyme may have a catabolic function, producing H6P for energy production in glycolysis; it is bound to the mitochondrial membrane, which enables the coordination of glycolysis with the TCA cycle. Types II and III enzyme may have anabolic functions, providing H6P for glycogen or lipid synthesis. Type IV enzyme is found in the liver and pancreatic beta-cells, where it is controlled by insulin (activation) and glucagon (inhibition). In pancreatic beta-cells, type IV enzyme acts as a glucose sensor to modify insulin secretion. Mutations in type IV hexokinase have been associated with diabetes mellitus. Hexokinase (2.7.1.1 from EC), a fructose and glucose phosphorylating enzyme, contains two structurally similar domains represented by this family and PF03727 from PFAM. Some hexokinases have two copies of each of these domains. This entry represents the N-terminal domain.; GO: 0005524 ATP binding, 0016773 phosphotransferase activity, alcohol group as acceptor, 0005975 carbohydrate metabolic process; PDB: 3O1W_A 3O6W_A 3O4W_B 3O08_B 3O80_A 3O5B_A 3O8M_A 3O1B_A 1BG3_A 4DHY_A ....
Probab=100.00 E-value=3.6e-63 Score=457.20 Aligned_cols=202 Identities=48% Similarity=0.754 Sum_probs=172.3
Q ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhcCCCC--CcceeeecccccCCCCCccccEEEEEeCCceeEEEEEE
Q 018393 36 RAVAILKEMEEKCGTPIGKLRQVADAMTVEMHAGLASEGG--SKLKMLISYVDNLPTGDEKGLFYALDLGGTNFRVLRVQ 113 (356)
Q Consensus 36 ~~~~~l~~~~~~~~~~~~~L~~i~~~f~~em~~gL~~~~~--s~l~MlPS~v~~lP~G~E~G~fLalDlGGTnlRv~~V~ 113 (356)
++.+.++++.+.|.+|.++|++|+++|++||+.||+++++ +.++||||||+++|+|+|+|+|||||||||||||++|+
T Consensus 2 ~~~~~v~~~~~~f~~s~~~L~~i~~~f~~em~~gL~~~~~~~~~l~MlPs~v~~~P~G~E~G~~LalDlGGTnlRv~~V~ 81 (206)
T PF00349_consen 2 DLQQAVQKLLQQFTLSDEQLQEISDRFLEEMEKGLAKSSSSMSSLKMLPSYVTSLPTGNEKGDFLALDLGGTNLRVALVE 81 (206)
T ss_dssp HHHHHHHHHHGGGS--HHHHHHHHHHHHHHHHHHHSTTTGCG-SS-EEEESEESSTTSTTEEEEEEEEESSSSEEEEEEE
T ss_pred hHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHccCCCCceeeeccccccccCCCCCCCceEEEEeecCcEEEEEEEE
Confidence 4678888999999999999999999999999999997653 24999999999999999999999999999999999999
Q ss_pred EcCCcceeEEEEeEeeccCccccccCchHHHHHHHHHHHHHHhhcCCCCCCCCCcceeeeeeeeeeeeeccCCceEEEee
Q 018393 114 LGGREGRVVKQEFEEVSIPPHLMTGSSHELFDYIAAALAKFVATEGEGFHVSPGRQRELGFTFSFPVRQTSIASGDLIKW 193 (356)
Q Consensus 114 L~g~~~~~~~~~~~~~~Ip~~~~~~~~~~LFd~IA~~I~~fl~~~~~~~~~~~~~~l~lGfTFSFP~~q~~i~~g~Li~w 193 (356)
|.|++. ....+++|+||++++.+++++||||||+||++|+++++.. +.++++||||||||||+|+++++|+|++|
T Consensus 82 L~g~~~--~~~~~~~~~ip~~~~~~~~~~lFd~ia~~i~~f~~~~~~~---~~~~~l~lGfTFSFP~~q~~~~~g~li~w 156 (206)
T PF00349_consen 82 LSGNGK--VEIEQEKYKIPEELMNGSGEELFDFIADCIAEFLKEHNLE---SRDEKLPLGFTFSFPVEQTSLNSGTLIRW 156 (206)
T ss_dssp EESSSE--EEEEEEEEE--HHHHTSBHHHHHHHHHHHHHHHHHHTTTT---STTSEEEEEEEEESSEEESSTTEEEE---
T ss_pred EcCCCC--ceeeeccccCChHHhcCCcccHHHHHHHHHHHHHHHhccc---ccccccceEEEEEEEEEeccCCCeEEEEe
Confidence 988763 3344568999999999999999999999999999988752 23578999999999999999999999999
Q ss_pred ccceecCCCCCCcHHHHHHHHHHHcCCC-ceEEEEEecchhhhhcccccC
Q 018393 194 TKGFSIEDTVGEDVVGELTKAMERIGLD-MRVAALVNDTIGTLAGGRYHN 242 (356)
Q Consensus 194 tKgF~~~~v~G~dv~~lL~~al~r~~l~-v~v~aivNDTVaTLla~~y~~ 242 (356)
||||++++++|+|++++|++||+|++++ ++|+||+|||||||||++|.|
T Consensus 157 tKgf~~~~~~G~dv~~lL~~al~r~~~~~v~v~aivNDTVgTLla~~Y~~ 206 (206)
T PF00349_consen 157 TKGFDISGVVGKDVVELLQDALKRRGLPNVKVVAIVNDTVGTLLAGAYQD 206 (206)
T ss_dssp -TT---BTGTTSBHHHHHHHHHHHHTSSEEEEEEEE-HHHHHHHHHHTT-
T ss_pred eccccccCCCCCccchhHHHHHHHhcccCcceEEEEECCHHHhhhhhcCC
Confidence 9999999999999999999999999997 999999999999999999975
No 9
>PF03727 Hexokinase_2: Hexokinase; InterPro: IPR022673 Hexokinase is an important enzyme that catalyses the ATP-dependent conversion of aldo- and keto-hexose sugars to the hexose-6-phosphate (H6P). The enzyme can catalyse this reaction on glucose, fructose, sorbitol and glucosamine, and as such is the first step in a number of metabolic pathways []. The addition of a phosphate group to the sugar acts to trap it in a cell, since the negatively charged phosphate cannot easily traverse the plasma membrane. The enzyme is widely distributed in eukaryotes. There are three isozymes of hexokinase in yeast (PI, PII and glucokinase): isozymes PI and PII phosphorylate both aldo- and keto-sugars; glucokinase is specific for aldo-hexoses. All three isozymes contain two domains []. Structural studies of yeast hexokinase reveal a well-defined catalytic pocket that binds ATP and hexose, allowing easy transfer of the phosphate from ATP to the sugar []. Vertebrates contain four hexokinase isozymes, designated I to IV, where types I to III contain a duplication of the two-domain yeast-type hexokinases. Both the N- and C-terminal halves bind hexose and H6P, though in types I an III only the C-terminal half supports catalysis, while both halves support catalysis in type II. The N-terminal half is the regulatory region. Type IV hexokinase is similar to the yeast enzyme in containing only the two domains, and is sometimes incorrectly referred to as glucokinase. The different vertebrate isozymes differ in their catalysis, localisation and regulation, thereby contributing to the different patterns of glucose metabolism in different tissues []. Whereas types I to III can phosphorylate a variety of hexose sugars and are inhibited by glucose-6-phosphate (G6P), type IV is specific for glucose and shows no G6P inhibition. Type I enzyme may have a catabolic function, producing H6P for energy production in glycolysis; it is bound to the mitochondrial membrane, which enables the coordination of glycolysis with the TCA cycle. Types II and III enzyme may have anabolic functions, providing H6P for glycogen or lipid synthesis. Type IV enzyme is found in the liver and pancreatic beta-cells, where it is controlled by insulin (activation) and glucagon (inhibition). In pancreatic beta-cells, type IV enzyme acts as a glucose sensor to modify insulin secretion. Mutations in type IV hexokinase have been associated with diabetes mellitus. Hexokinase (2.7.1.1 from EC), a fructose and glucose phosphorylating enzyme, contains two structurally similar domains represented by this family and PF00349 from PFAM. Some members of the family have two copies of each of these domains. This entry represents the more C-terminal domain.; GO: 0005524 ATP binding, 0016773 phosphotransferase activity, alcohol group as acceptor, 0005975 carbohydrate metabolic process; PDB: 4DHY_A 3ID8_A 4DCH_A 3FGU_A 3QIC_A 3A0I_X 3VEY_A 3IDH_A 3VEV_A 3VF6_A ....
Probab=100.00 E-value=4.2e-37 Score=290.06 Aligned_cols=106 Identities=53% Similarity=0.848 Sum_probs=91.9
Q ss_pred CceEEEEecccccceeecccCCCCCcCCCCCCCCcEEEEecCCCcCCC--CCCCChhhHhhhccCCCCCCceeeehhccc
Q 018393 244 DAIAAVILGTGTNAAYVERAHAIPKWHGLLPKSGEMVINMEWGNFRSS--HLPLTEYDEALDTESLNPGEQIFEKIISGM 321 (356)
Q Consensus 244 ~~~iGlIlGTGtNacY~e~~~~I~k~~~~~~~~~~miINtEwG~Fg~~--~lp~T~~D~~vD~~s~nPG~q~fEKmvSG~ 321 (356)
+|+||+|+|||||+||+|+.++|+|+++ ..++||||||||+|++. .+|+|+||+.+|+.|+|||+|+||||+|||
T Consensus 1 ~~~iGlIlGTG~Na~Y~e~~~~i~~~~~---~~~~~iINtEwg~f~~~~~~~~~t~~D~~lD~~s~~pg~q~~EKmvsG~ 77 (243)
T PF03727_consen 1 ECRIGLILGTGTNACYMEKTSNIPKLKG---KDGKMIINTEWGNFDNGLLDLPRTEYDKQLDAESPNPGFQPFEKMVSGM 77 (243)
T ss_dssp TEEEEEEESSSEEEEEEEEGGG-TTSST---SSSEEEEEE-GGGTTTTTTTTTS-HHHHHHHHTSSSTTSSTTHHHTSHH
T ss_pred CcEEEEEEeCCeeEEEeeecccCccccc---cCCeEEEEeecCCCCCCCccCCCCcccHHHhhhhhccCceEEeeEecee
Confidence 5899999999999999999999999987 56789999999999653 279999999999999999999999999999
Q ss_pred chHHHHHHHHHHHHHccCCCCCccchhhcccc
Q 018393 322 YLGEIVRRVLCRMAEEANFFGLLTCRLCITTH 353 (356)
Q Consensus 322 YLGEl~R~ill~l~~~~~lF~~~~~~~~~~~~ 353 (356)
|||||+|++|++|++++.||++..+ ..|.+|
T Consensus 78 YLGEl~Rlvl~~l~~~~~lf~~~~~-~~l~~~ 108 (243)
T PF03727_consen 78 YLGELVRLVLLDLIKEGLLFGGQDP-EKLNTP 108 (243)
T ss_dssp HHHHHHHHHHHHHHHTTSSGGGS---TTTTST
T ss_pred cHHHHHHHHHHHHHhcCCccCCcch-HHhcCC
Confidence 9999999999999999999998765 334433
No 10
>PRK09698 D-allose kinase; Provisional
Probab=98.50 E-value=3.4e-06 Score=81.26 Aligned_cols=163 Identities=17% Similarity=0.218 Sum_probs=102.8
Q ss_pred cccEEEEEeCCceeEEEEEEEcCCcceeEEEEeEeeccCccccccCchHHHHHHHHHHHHHHhhcCCCCCCCCCcceeee
Q 018393 94 KGLFYALDLGGTNFRVLRVQLGGREGRVVKQEFEEVSIPPHLMTGSSHELFDYIAAALAKFVATEGEGFHVSPGRQRELG 173 (356)
Q Consensus 94 ~G~fLalDlGGTnlRv~~V~L~g~~~~~~~~~~~~~~Ip~~~~~~~~~~LFd~IA~~I~~fl~~~~~~~~~~~~~~l~lG 173 (356)
.+.++++|+|||++|++++.+.|+ +... ..++.|.. .+. +.++.+++.|.+++++.+. +..-+|
T Consensus 3 ~~~~lgidig~t~i~~~l~d~~g~---i~~~--~~~~~~~~---~~~-~~~~~l~~~i~~~~~~~~~-------~i~gig 66 (302)
T PRK09698 3 KNVVLGIDMGGTHIRFCLVDAEGE---ILHC--EKKRTAEV---IAP-DLVSGLGEMIDEYLRRFNA-------RCHGIV 66 (302)
T ss_pred ccEEEEEEcCCcEEEEEEEcCCCC---EEEE--EEeCCccc---cch-HHHHHHHHHHHHHHHHcCC-------CeeEEE
Confidence 456899999999999999998663 3322 23444432 223 3499999999999986531 223455
Q ss_pred eeeeeeeeeccCCceEEEeeccceecCCCCCCcHHHHHHHHHHHcCCCceEEEEEecchhhhhccccc---CCCceEEEE
Q 018393 174 FTFSFPVRQTSIASGDLIKWTKGFSIEDTVGEDVVGELTKAMERIGLDMRVAALVNDTIGTLAGGRYH---NKDAIAAVI 250 (356)
Q Consensus 174 fTFSFP~~q~~i~~g~Li~wtKgF~~~~v~G~dv~~lL~~al~r~~l~v~v~aivNDTVaTLla~~y~---~~~~~iGlI 250 (356)
+.+.-|++. +.+.++. +..+..++..+.++.+.|++++ ++| +.+.||.-+..++-.+. ..+..+.+.
T Consensus 67 ia~pG~vd~---~~g~i~~-~~~~~~~~~~~~~l~~~l~~~~---~~p---v~v~NDa~aaa~~E~~~~~~~~~~~~~v~ 136 (302)
T PRK09698 67 MGFPALVSK---DRRTVIS-TPNLPLTALDLYDLADKLENTL---NCP---VFFSRDVNLQLLWDVKENNLTQQLVLGAY 136 (302)
T ss_pred EeCCcceeC---CCCEEEe-cCCCCccccccCCHHHHHHHHh---CCC---EEEcchHhHHHHHHHHhcCCCCceEEEEE
Confidence 555555654 3444443 3334333456678888777664 444 67999999876654332 345788999
Q ss_pred ecccccceeecccCCCCCcCCCCCCCCcEEEE
Q 018393 251 LGTGTNAAYVERAHAIPKWHGLLPKSGEMVIN 282 (356)
Q Consensus 251 lGTGtNacY~e~~~~I~k~~~~~~~~~~miIN 282 (356)
+|||.-++++.+-.-+.-..+...+-++|.++
T Consensus 137 lgtGIG~giv~~G~~~~G~~g~agEiGh~~v~ 168 (302)
T PRK09698 137 LGTGMGFAVWMNGAPWTGAHGVAGELGHIPLG 168 (302)
T ss_pred ecCceEEEEEECCEEeeCCCCCccccCceEee
Confidence 99999999997643322222212234667765
No 11
>PRK13311 N-acetyl-D-glucosamine kinase; Provisional
Probab=98.29 E-value=3.1e-05 Score=73.28 Aligned_cols=137 Identities=15% Similarity=0.256 Sum_probs=91.4
Q ss_pred EEEEEeCCceeEEEEEEEcCCcceeEEEEeEeeccCccccccCchHHHHHHHHHHHHHHhhcCCCCCCCCCcceeeeeee
Q 018393 97 FYALDLGGTNFRVLRVQLGGREGRVVKQEFEEVSIPPHLMTGSSHELFDYIAAALAKFVATEGEGFHVSPGRQRELGFTF 176 (356)
Q Consensus 97 fLalDlGGTnlRv~~V~L~g~~~~~~~~~~~~~~Ip~~~~~~~~~~LFd~IA~~I~~fl~~~~~~~~~~~~~~l~lGfTF 176 (356)
|+++|+|||++|++++++.++ +... ++++.|. .+.+++.+.+.+.+.++..... ...|..+
T Consensus 2 ~lgidiggt~i~~~l~d~~g~---i~~~--~~~~~~~----~~~~~~~~~i~~~i~~~~~~~~----------~~~gIgv 62 (256)
T PRK13311 2 YYGFDMGGTKIELGVFDENLQ---RIWH--KRVPTPR----EDYPQLLQILRDLTEEADTYCG----------VQGSVGI 62 (256)
T ss_pred EEEEEECCCcEEEEEECCCCC---EEEE--EEecCCC----cCHHHHHHHHHHHHHHHHhhcC----------CCceEEE
Confidence 799999999999999998653 3322 2455542 2457888888888877743221 1236667
Q ss_pred eeeeeeccCCceEEEeeccceecCCCCCCcHHHHHHHHHHHcCCCceEEEEEecchhhhhccccc----CCCceEEEEec
Q 018393 177 SFPVRQTSIASGDLIKWTKGFSIEDTVGEDVVGELTKAMERIGLDMRVAALVNDTIGTLAGGRYH----NKDAIAAVILG 252 (356)
Q Consensus 177 SFP~~q~~i~~g~Li~wtKgF~~~~v~G~dv~~lL~~al~r~~l~v~v~aivNDTVaTLla~~y~----~~~~~iGlIlG 252 (356)
|.|=-- ..+.|.+ .++ ..++..+.++.+.|++.+ ++| +.+-||.-+.-++-.+. +.+..+.+.+|
T Consensus 63 ~~pG~v-d~~~g~i-~~~---~~~~w~~~~l~~~l~~~~---~~p---V~leNDanaaAlaE~~~g~~~~~~~~v~i~lg 131 (256)
T PRK13311 63 GIPGLP-NADDGTV-FTA---NVPSAMGQPLQADLSRLI---QRE---VRIDNDANCFALSEAWDPEFRTYPTVLGLILG 131 (256)
T ss_pred EecCcE-ECCCCEE-Ecc---CCCcccCCChHHHHHHHH---CCC---EEEEchhhHHHHHHHHhcCCCCCCcEEEEEEC
Confidence 776422 1234554 343 223334568887777665 444 57999998777766553 45788999999
Q ss_pred ccccceeeccc
Q 018393 253 TGTNAAYVERA 263 (356)
Q Consensus 253 TGtNacY~e~~ 263 (356)
||.-++.+..-
T Consensus 132 tGiG~giv~~G 142 (256)
T PRK13311 132 TGVGGGLIVNG 142 (256)
T ss_pred cCeEEEEEECC
Confidence 99999999764
No 12
>PRK12408 glucokinase; Provisional
Probab=98.14 E-value=3.6e-05 Score=76.11 Aligned_cols=193 Identities=19% Similarity=0.168 Sum_probs=108.4
Q ss_pred CCCCcccc-EEEEEeCCceeEEEEEEEcCCc---ceeEEEEeEeeccCccccccCchHHHHHHHHHHHHHHhhcCCCCCC
Q 018393 89 PTGDEKGL-FYALDLGGTNFRVLRVQLGGRE---GRVVKQEFEEVSIPPHLMTGSSHELFDYIAAALAKFVATEGEGFHV 164 (356)
Q Consensus 89 P~G~E~G~-fLalDlGGTnlRv~~V~L~g~~---~~~~~~~~~~~~Ip~~~~~~~~~~LFd~IA~~I~~fl~~~~~~~~~ 164 (356)
.++-|++. ||++|+||||.|+++++-.+.. ..+. ..++++-+ ..+.+.+. |.+|+++ ..
T Consensus 9 ~~~~~~~~~~L~~DIGGT~i~~al~d~~g~~~~~~~~~--~~~~~~t~------~~~~~~~~----i~~~~~~-~~---- 71 (336)
T PRK12408 9 AVAVPRPESFVAADVGGTHVRVALVCASPDAAKPVELL--DYRTYRCA------DYPSLAAI----LADFLAE-CA---- 71 (336)
T ss_pred cccCcccccEEEEEcChhhhheeEEeccCCcccccccc--ceeEecCC------CccCHHHH----HHHHHhc-CC----
Confidence 34566664 9999999999999999754431 0111 11223222 12333333 4556554 11
Q ss_pred CCCcceeeeeeeeeeeeeccCCceEEEeeccceecCCCCCCcHHHHHHHHHHHcCCCceEEEEEecchhhhhccccc---
Q 018393 165 SPGRQRELGFTFSFPVRQTSIASGDLIKWTKGFSIEDTVGEDVVGELTKAMERIGLDMRVAALVNDTIGTLAGGRYH--- 241 (356)
Q Consensus 165 ~~~~~l~lGfTFSFP~~q~~i~~g~Li~wtKgF~~~~v~G~dv~~lL~~al~r~~l~v~v~aivNDTVaTLla~~y~--- 241 (356)
+ +.|..+++|=- . .++|++. .+ ..... .. .+.|+++ +.+..+.+.||.-+.-++-.+.
T Consensus 72 ---~--~~~igIg~pG~-~-~~~g~v~-~~-nl~w~-----~~----~~~l~~~-~~~~~V~l~ND~naaa~gE~~~~~~ 132 (336)
T PRK12408 72 ---P--VRRGVIASAGY-A-LDDGRVI-TA-NLPWT-----LS----PEQIRAQ-LGLQAVHLVNDFEAVAYAAPYMEGN 132 (336)
T ss_pred ---C--cCEEEEEecCC-c-eECCEEE-ec-CCCCc-----cC----HHHHHHH-cCCCeEEEeecHHHHHcccccCCHh
Confidence 1 34566666654 1 3456665 22 11111 12 2444433 3455579999999999987665
Q ss_pred ----------CC-CceEEEEecccccceeecccCCCCCcCCCCCCCCcEEEEecCCCcCCCCCCCChhhHhh-hccCCCC
Q 018393 242 ----------NK-DAIAAVILGTGTNAAYVERAHAIPKWHGLLPKSGEMVINMEWGNFRSSHLPLTEYDEAL-DTESLNP 309 (356)
Q Consensus 242 ----------~~-~~~iGlIlGTGtNacY~e~~~~I~k~~~~~~~~~~miINtEwG~Fg~~~lp~T~~D~~v-D~~s~nP 309 (356)
.. ...+.+.+|||..++.+.+-. .+....=.|+|... ..|.+.....+ .......
T Consensus 133 ~~~~~~g~~~~~~~~~~~i~~GTGiGggivi~g~-----------~g~~~~agE~GH~~--~~~~~~~~~~l~~~~~~~~ 199 (336)
T PRK12408 133 QVLQLSGPAQAAAGPALVLGPGTGLGAALWIPNG-----------GRPVVLPTEAGQAA--LAAASELEMQLLQHLLRTR 199 (336)
T ss_pred HeeeecCCCCCCCCcEEEEECCCcceEEEEEcCC-----------CceeeecCcccccc--CCCCCHHHHHHHHHHHhhC
Confidence 22 467888899999999996532 22345677888652 11222111110 1111223
Q ss_pred CCceeeehhcccchHHHHHHH
Q 018393 310 GEQIFEKIISGMYLGEIVRRV 330 (356)
Q Consensus 310 G~q~fEKmvSG~YLGEl~R~i 330 (356)
+.-.+|...||.-|..+.|..
T Consensus 200 ~~~~~E~~~Sg~gL~~~~~~~ 220 (336)
T PRK12408 200 THVPIEHVLSGPGLLNLYRAL 220 (336)
T ss_pred CceeHhheecHHHHHHHHHHH
Confidence 334689999999998887765
No 13
>TIGR00744 ROK_glcA_fam ROK family protein (putative glucokinase). This alignment models one branch of the ROK superfamily of proteins. The three members of the seed alignment for this model all have experimental evidence for activity as glucokinase, but the set of related proteins is crowded with paralogs of different or unknown function. Proteins scoring above the trusted_cutoff will show strong similarity to at least one known glucokinase and may be designated as putative glucokinases. However, definitive identification of glucokinases should be done only with extreme caution.
Probab=98.13 E-value=0.0001 Score=71.36 Aligned_cols=156 Identities=17% Similarity=0.278 Sum_probs=98.8
Q ss_pred EEEEeCCceeEEEEEEEcCCcceeEEEEeEeeccCccccccCchHHHHHHHHHHHHHHhhcCCCCCCCCCcceeeeeeee
Q 018393 98 YALDLGGTNFRVLRVQLGGREGRVVKQEFEEVSIPPHLMTGSSHELFDYIAAALAKFVATEGEGFHVSPGRQRELGFTFS 177 (356)
Q Consensus 98 LalDlGGTnlRv~~V~L~g~~~~~~~~~~~~~~Ip~~~~~~~~~~LFd~IA~~I~~fl~~~~~~~~~~~~~~l~lGfTFS 177 (356)
+++|+|||++|++++++.|. +.... .++.+ .+.+++++.|.+.|.+|+++.+... .-.+|+.++
T Consensus 1 lgidig~t~~~~~l~d~~g~---i~~~~--~~~~~-----~~~~~~~~~l~~~i~~~~~~~~~~~------~~i~gIgva 64 (318)
T TIGR00744 1 IGVDIGGTTIKLGVVDEEGN---ILSKW--KVPTD-----TTPETIVDAIASAVDSFIQHIAKVG------HEIVAIGIG 64 (318)
T ss_pred CEEEeCCCEEEEEEECCCCC---EEEEE--EeCCC-----CCHHHHHHHHHHHHHHHHHhcCCCc------cceEEEEEe
Confidence 58999999999999998653 33222 33333 2468899999999999998765321 124667777
Q ss_pred ee--eeeccCCceEEEeeccceecCCCCCCcHHHHHHHHHHHcCCCceEEEEEecchhhhhcccc----cCCCceEEEEe
Q 018393 178 FP--VRQTSIASGDLIKWTKGFSIEDTVGEDVVGELTKAMERIGLDMRVAALVNDTIGTLAGGRY----HNKDAIAAVIL 251 (356)
Q Consensus 178 FP--~~q~~i~~g~Li~wtKgF~~~~v~G~dv~~lL~~al~r~~l~v~v~aivNDTVaTLla~~y----~~~~~~iGlIl 251 (356)
.| ++. ++|.+ .|+-.+. -.+.|+.+.|++.+ ++| +.+.||+-+..++-.+ .+.+..+.+.+
T Consensus 65 ~pG~vd~---~~g~~-~~~~~~~---w~~~~l~~~l~~~~---~~p---v~v~NDa~~~alaE~~~g~~~~~~~~~~v~i 131 (318)
T TIGR00744 65 APGPVNR---QRGTV-YFAVNLD---WKQEPLKEKVEARV---GLP---VVVENDANAAALGEYKKGAGKGARDVICITL 131 (318)
T ss_pred ccccccC---CCCEE-EecCCCC---CCCCCHHHHHHHHH---CCC---EEEechHHHHHHHHHHhcccCCCCcEEEEEe
Confidence 76 443 34553 3332222 23456666666544 444 5799999988665444 35577899999
Q ss_pred cccccceeecccCCCCCcCCCCCCCCcEEEE
Q 018393 252 GTGTNAAYVERAHAIPKWHGLLPKSGEMVIN 282 (356)
Q Consensus 252 GTGtNacY~e~~~~I~k~~~~~~~~~~miIN 282 (356)
|||..++++.+-.-+.-..+...+-++|+++
T Consensus 132 gtGiG~giv~~G~~~~G~~g~agEiGh~~v~ 162 (318)
T TIGR00744 132 GTGLGGGIIINGEIRHGHNGVGAEIGHIRMV 162 (318)
T ss_pred CCccEEEEEECCEEeecCCCCCcccCceEeC
Confidence 9999999987643222222211223567764
No 14
>PRK13310 N-acetyl-D-glucosamine kinase; Provisional
Probab=98.09 E-value=0.0001 Score=71.15 Aligned_cols=156 Identities=20% Similarity=0.274 Sum_probs=98.4
Q ss_pred EEEEEeCCceeEEEEEEEcCCcceeEEEEeEeeccCccccccCchHHHHHHHHHHHHHHhhcCCCCCCCCCcceeeeeee
Q 018393 97 FYALDLGGTNFRVLRVQLGGREGRVVKQEFEEVSIPPHLMTGSSHELFDYIAAALAKFVATEGEGFHVSPGRQRELGFTF 176 (356)
Q Consensus 97 fLalDlGGTnlRv~~V~L~g~~~~~~~~~~~~~~Ip~~~~~~~~~~LFd~IA~~I~~fl~~~~~~~~~~~~~~l~lGfTF 176 (356)
++++|+|||++|++++.+.|+ +.... .++.|. .+.+++.+.|++.+.++...... ...+|+.+
T Consensus 2 ~lgidig~t~i~~~l~d~~g~---i~~~~--~~~~~~----~~~~~~~~~i~~~i~~~~~~~~~--------~~~igia~ 64 (303)
T PRK13310 2 YYGFDIGGTKIELGVFNEKLE---LQWEE--RVPTPR----DSYDAFLDAVCELVAEADQRFGC--------KGSVGIGI 64 (303)
T ss_pred eEEEEeCCCcEEEEEECCCCc---EEEEE--EecCCC----cCHHHHHHHHHHHHHHHHhhcCC--------cceEEEeC
Confidence 689999999999999998653 33222 344442 24678899999888887643321 12366666
Q ss_pred eeeeeeccCCceEEEeeccceecCCCCCCcHHHHHHHHHHHcCCCceEEEEEecchhhhhccccc----CCCceEEEEec
Q 018393 177 SFPVRQTSIASGDLIKWTKGFSIEDTVGEDVVGELTKAMERIGLDMRVAALVNDTIGTLAGGRYH----NKDAIAAVILG 252 (356)
Q Consensus 177 SFP~~q~~i~~g~Li~wtKgF~~~~v~G~dv~~lL~~al~r~~l~v~v~aivNDTVaTLla~~y~----~~~~~iGlIlG 252 (356)
.=|++. +.|.+. ++ ..++..+-++.+.|++.+ ++| +.+-||.-+-.++-.+. +.+..+.+.+|
T Consensus 65 pG~vd~---~~g~~~-~~---~~~~w~~~~l~~~l~~~~---~~p---V~ieNDa~aaalaE~~~g~~~~~~~~~~l~~g 131 (303)
T PRK13310 65 PGMPET---EDGTLY-AA---NVPAASGKPLRADLSARL---GRD---VRLDNDANCFALSEAWDDEFTQYPLVMGLILG 131 (303)
T ss_pred CCcccC---CCCEEe-cc---CcccccCCcHHHHHHHHH---CCC---eEEeccHhHHHHHHhhhccccCCCcEEEEEec
Confidence 666654 245443 22 223334567777766554 454 57999998766665443 45788999999
Q ss_pred ccccceeecccCCCCCcCCCCCCCCcEEEE
Q 018393 253 TGTNAAYVERAHAIPKWHGLLPKSGEMVIN 282 (356)
Q Consensus 253 TGtNacY~e~~~~I~k~~~~~~~~~~miIN 282 (356)
||.-++++.+-.-+.-..+...+-++|.|+
T Consensus 132 tGiG~giv~~G~l~~G~~g~aGEiGH~~v~ 161 (303)
T PRK13310 132 TGVGGGLVFNGKPISGRSYITGEFGHMRLP 161 (303)
T ss_pred CceEEEEEECCEEeeCCCCccccccceeec
Confidence 999999998643222222211233567664
No 15
>COG1940 NagC Transcriptional regulator/sugar kinase [Transcription / Carbohydrate transport and metabolism]
Probab=98.08 E-value=7.1e-05 Score=72.54 Aligned_cols=168 Identities=20% Similarity=0.297 Sum_probs=107.0
Q ss_pred ccccEEEEEeCCceeEEEEEEEcCCcceeEEEEeEeeccCccccccCchHHHHHHHHHHHHHHhhcCCCCCCCCCcceee
Q 018393 93 EKGLFYALDLGGTNFRVLRVQLGGREGRVVKQEFEEVSIPPHLMTGSSHELFDYIAAALAKFVATEGEGFHVSPGRQREL 172 (356)
Q Consensus 93 E~G~fLalDlGGTnlRv~~V~L~g~~~~~~~~~~~~~~Ip~~~~~~~~~~LFd~IA~~I~~fl~~~~~~~~~~~~~~l~l 172 (356)
+...+++||+|||+++++++.+.|+ +... +..+.|... ..+++.+-|++.+.++++.+. . ..-.+
T Consensus 4 ~~~~~lgidIggt~i~~~l~d~~g~---~l~~--~~~~~~~~~---~~~~~~~~i~~~i~~~~~~~~-~------~~~~i 68 (314)
T COG1940 4 EAMTVLGIDIGGTKIKVALVDLDGE---ILLR--ERIPTPTPD---PEEAILEAILALVAELLKQAQ-G------RVAII 68 (314)
T ss_pred cCcEEEEEEecCCEEEEEEECCCCc---EEEE--EEEecCCCC---chhHHHHHHHHHHHHHHHhcC-C------cCceE
Confidence 4557999999999999999998764 2222 234444432 125888999999999988763 1 22357
Q ss_pred eeeeeeeeeeccCCceEEEeeccceecCCCCCCcHHHHHHHHHHHcCCCceEEEEEecchhhhhccccc----CCCceEE
Q 018393 173 GFTFSFPVRQTSIASGDLIKWTKGFSIEDTVGEDVVGELTKAMERIGLDMRVAALVNDTIGTLAGGRYH----NKDAIAA 248 (356)
Q Consensus 173 GfTFSFP~~q~~i~~g~Li~wtKgF~~~~v~G~dv~~lL~~al~r~~l~v~v~aivNDTVaTLla~~y~----~~~~~iG 248 (356)
|+-++-|..-..-. .+..+. ......+-|+.+.|++.+. +| +.|-||+.+.-++-++. +.+..+-
T Consensus 69 GIgi~~pg~~~~~~--~~~~~~---~~~~~~~~~l~~~L~~~~~---~P---v~veNDan~aalaE~~~g~~~~~~~~~~ 137 (314)
T COG1940 69 GIGIPGPGDVDNGT--VIVPAP---NLGWWNGVDLAEELEARLG---LP---VFVENDANAAALAEAWFGAGRGIDDVVY 137 (314)
T ss_pred EEEeccceeccCCc--EEeecC---CCCccccccHHHHHHHHHC---CC---EEEecHHHHHHHHHHHhCCCCCCCCEEE
Confidence 77777776664311 122111 1111223566666666554 33 47899999999998885 3578999
Q ss_pred EEecccccceeecccCCCCCcCCCCCCCCcEEEEecCC
Q 018393 249 VILGTGTNAAYVERAHAIPKWHGLLPKSGEMVINMEWG 286 (356)
Q Consensus 249 lIlGTGtNacY~e~~~~I~k~~~~~~~~~~miINtEwG 286 (356)
+.+|||.-++++.+-.-..-..+...+-++|+++-...
T Consensus 138 i~~gtGIG~giv~~g~l~~G~~g~age~Gh~~v~~~g~ 175 (314)
T COG1940 138 ITLGTGIGGGIIVNGKLLRGANGNAGEIGHMVVDPDGE 175 (314)
T ss_pred EEEccceeEEEEECCEEeecCCCccccccceEECCCCc
Confidence 99999999999987432221111111235677776554
No 16
>PTZ00288 glucokinase 1; Provisional
Probab=97.99 E-value=0.0002 Score=72.92 Aligned_cols=222 Identities=20% Similarity=0.202 Sum_probs=123.0
Q ss_pred HHHHHHHHHhhcCCCCCcceeeecccccCCCCCccccEEEEEeCCceeEEEEEEEcCCcceeEEEEeEeeccCccccccC
Q 018393 60 DAMTVEMHAGLASEGGSKLKMLISYVDNLPTGDEKGLFYALDLGGTNFRVLRVQLGGREGRVVKQEFEEVSIPPHLMTGS 139 (356)
Q Consensus 60 ~~f~~em~~gL~~~~~s~l~MlPS~v~~lP~G~E~G~fLalDlGGTnlRv~~V~L~g~~~~~~~~~~~~~~Ip~~~~~~~ 139 (356)
..|.+++.+-|.++.. |- +.| .+|+.|+||||.|+++.++...+....... .++++ ++..+
T Consensus 6 ~~~~~~~~~~~~~~~~--------~~-~~~------~~~~~DiGgt~~R~~~~~~~~~~~~~~~~~--~~~~~--~~~~~ 66 (405)
T PTZ00288 6 EIFLEQLAEELKTDAS--------WS-SGP------IFVGCDVGGTNARVGFAREVQHDDSGVHII--YVRFN--VTKTD 66 (405)
T ss_pred HHHHHHHHHHhccCcc--------cc-cCC------eEEEEEecCCceEEEEEeccCCCCCceeEE--EEecc--ccccc
Confidence 4567777777766421 11 223 489999999999999999832111111111 23333 23345
Q ss_pred chHHHHHHHHHHHHHHhhcCCCCCCCCCcceeeeeeeeee--eeeccCCceEEEeeccceecCCCCCCcHHHHHHHHHHH
Q 018393 140 SHELFDYIAAALAKFVATEGEGFHVSPGRQRELGFTFSFP--VRQTSIASGDLIKWTKGFSIEDTVGEDVVGELTKAMER 217 (356)
Q Consensus 140 ~~~LFd~IA~~I~~fl~~~~~~~~~~~~~~l~lGfTFSFP--~~q~~i~~g~Li~wtKgF~~~~v~G~dv~~lL~~al~r 217 (356)
..++.+++++-+....+..... +....+ +|+.| +..-. -.|....|.-.+.+++. .-.+
T Consensus 67 ~~~~~~~~~~~~~~l~~~~~~~------~~~~~a-~iAvAGPV~~~~-~~~~~~~~~~~~~lTNl-pw~i---------- 127 (405)
T PTZ00288 67 IRELLEFFDEVLQKLKKNLSFI------QRVAAG-AISVPGPVTGGQ-LAGPFNNLKGIARLTDY-PVEL---------- 127 (405)
T ss_pred HHHHHHHHHHHHHHHHhcCccc------cCcCeE-EEEEeCceeCCE-eeccccccccccccCCC-Cchh----------
Confidence 6788888888777765532210 112233 67765 43211 11344777766666663 1111
Q ss_pred cCCCceEEEEEecchhhhhccccc--------------------------------CCCceEEEEecccccceeecccCC
Q 018393 218 IGLDMRVAALVNDTIGTLAGGRYH--------------------------------NKDAIAAVILGTGTNAAYVERAHA 265 (356)
Q Consensus 218 ~~l~v~v~aivNDTVaTLla~~y~--------------------------------~~~~~iGlIlGTGtNacY~e~~~~ 265 (356)
++++-+.++||=.|.=.+.... .....+-+..|||..+|++.+...
T Consensus 128 --~~~~~~~liNDfeA~aygi~~l~~~~~~~~~f~~~~~~~~~~~l~~~~~~g~~~~~~~~~Vlg~GTGLG~alli~~~l 205 (405)
T PTZ00288 128 --FPPGRSALLNDLEAGAYGVLAVSNAGRLSEYFKVMWKGTQWDALSEGKPAGSVIGRGRCMVLAPGTGLGSSLIHYVGV 205 (405)
T ss_pred --cCCCeEEEEEhHHHHhCcccccChhhcccccccccccccceeeecCCCCCcccCCCCCEEEEEeccceeEEEEECCee
Confidence 5677789999976654443321 123347889999999999976421
Q ss_pred CCCcCCCCCCCCcEEEEecCCCcCCCCCCCC--hhhHhhhccCCC-C--------CCceeeehhcccchHHHHHHH
Q 018393 266 IPKWHGLLPKSGEMVINMEWGNFRSSHLPLT--EYDEALDTESLN-P--------GEQIFEKIISGMYLGEIVRRV 330 (356)
Q Consensus 266 I~k~~~~~~~~~~miINtEwG~Fg~~~lp~T--~~D~~vD~~s~n-P--------G~q~fEKmvSG~YLGEl~R~i 330 (356)
+ .+..++=+|.|...-+.-|.+ .+...+=..-.. - ..-.+|.++||+=|-.+.|..
T Consensus 206 ~---------~G~~~~agEgGHv~~~~~~~~~~~~g~~l~~~l~~~~~~~g~~~~~~vs~E~v~SG~GL~~ly~~l 272 (405)
T PTZ00288 206 S---------DQYIVIPLECGHLSISWPANEDSDYVQALAGYLASKALSKGIDSTVYPIYEDIVSGRGLEFNYAYE 272 (405)
T ss_pred c---------CCcccccccccceeeccCCCCccchhHHHHHHHHhhhccccccccCceeEeEEecHHHHHHHHHHH
Confidence 1 234567778876532111222 221211110000 0 123789999999998887753
No 17
>PRK09557 fructokinase; Reviewed
Probab=97.92 E-value=0.0003 Score=67.94 Aligned_cols=137 Identities=19% Similarity=0.284 Sum_probs=88.1
Q ss_pred EEEEEeCCceeEEEEEEEcCCcceeEEEEeEeeccCccccccCchHHHHHHHHHHHHHHhhcCCCCCCCCCcceeeeeee
Q 018393 97 FYALDLGGTNFRVLRVQLGGREGRVVKQEFEEVSIPPHLMTGSSHELFDYIAAALAKFVATEGEGFHVSPGRQRELGFTF 176 (356)
Q Consensus 97 fLalDlGGTnlRv~~V~L~g~~~~~~~~~~~~~~Ip~~~~~~~~~~LFd~IA~~I~~fl~~~~~~~~~~~~~~l~lGfTF 176 (356)
+|++|+|||++|++++++.|+ +... ..++.|. .+.+++.+.|++.+.++..... ...-+|+.+
T Consensus 2 ~lgidig~t~~~~~l~d~~g~---i~~~--~~~~~~~----~~~~~~~~~i~~~i~~~~~~~~--------~~~gIgi~~ 64 (301)
T PRK09557 2 RIGIDLGGTKIEVIALDDAGE---ELFR--KRLPTPR----DDYQQTIEAIATLVDMAEQATG--------QRGTVGVGI 64 (301)
T ss_pred EEEEEECCCcEEEEEECCCCC---EEEE--EEecCCC----CCHHHHHHHHHHHHHHHHhhcC--------CceEEEecC
Confidence 689999999999999998653 2222 2344442 2456888888888888765432 112344444
Q ss_pred eeeeeeccCCceEEEeeccceecCCCCCCcHHHHHHHHHHHcCCCceEEEEEecchhhhhcccc----cCCCceEEEEec
Q 018393 177 SFPVRQTSIASGDLIKWTKGFSIEDTVGEDVVGELTKAMERIGLDMRVAALVNDTIGTLAGGRY----HNKDAIAAVILG 252 (356)
Q Consensus 177 SFP~~q~~i~~g~Li~wtKgF~~~~v~G~dv~~lL~~al~r~~l~v~v~aivNDTVaTLla~~y----~~~~~~iGlIlG 252 (356)
.=|++. ++|++......+ ..+.++.+.|++.+ ++| +.+.||..+..++-.+ .+++..+-+.+|
T Consensus 65 pG~vd~---~~g~i~~~~~~~----~~~~~l~~~l~~~~---~~p---v~~~NDa~aaA~aE~~~g~~~~~~~~~~l~ig 131 (301)
T PRK09557 65 PGSISP---YTGLVKNANSTW----LNGQPLDKDLSARL---NRE---VRLANDANCLAVSEAVDGAAAGKQTVFAVIIG 131 (301)
T ss_pred cccCcC---CCCeEEecCCcc----ccCCCHHHHHHHHH---CCC---EEEccchhHHHHHHHHhcccCCCCcEEEEEEc
Confidence 444543 345544322211 13467777777665 443 5689999987776544 345677899999
Q ss_pred ccccceeeccc
Q 018393 253 TGTNAAYVERA 263 (356)
Q Consensus 253 TGtNacY~e~~ 263 (356)
||.-++.+.+-
T Consensus 132 tGiG~giv~~G 142 (301)
T PRK09557 132 TGCGAGVAING 142 (301)
T ss_pred cceEEEEEECC
Confidence 99999999763
No 18
>PRK05082 N-acetylmannosamine kinase; Provisional
Probab=97.84 E-value=0.00048 Score=66.10 Aligned_cols=155 Identities=15% Similarity=0.212 Sum_probs=96.5
Q ss_pred EEEEEeCCceeEEEEEEEcCCcceeEEEEeEeeccCccccccCchHHHHHHHHHHHHHHhhcCCCCCCCCCcceeeeeee
Q 018393 97 FYALDLGGTNFRVLRVQLGGREGRVVKQEFEEVSIPPHLMTGSSHELFDYIAAALAKFVATEGEGFHVSPGRQRELGFTF 176 (356)
Q Consensus 97 fLalDlGGTnlRv~~V~L~g~~~~~~~~~~~~~~Ip~~~~~~~~~~LFd~IA~~I~~fl~~~~~~~~~~~~~~l~lGfTF 176 (356)
++++|+|||++|++++.+.|+ +... ..++.|.. .+.+++.+.|++.+.++... ...+|+.+
T Consensus 3 ~lgvdig~~~i~~~l~dl~g~---i~~~--~~~~~~~~---~~~~~~~~~i~~~i~~~~~~-----------~~~igi~~ 63 (291)
T PRK05082 3 TLAIDIGGTKIAAALVGEDGQ---IRQR--RQIPTPAS---QTPEALRQALSALVSPLQAQ-----------ADRVAVAS 63 (291)
T ss_pred EEEEEECCCEEEEEEEcCCCc---EEEE--EEecCCCC---CCHHHHHHHHHHHHHHhhhc-----------CcEEEEeC
Confidence 799999999999999999663 2222 23444432 34567888888888877421 13477777
Q ss_pred eeeeeeccCCceEEEeeccceecCCCCCCcHHHHHHHHHHHcCCCceEEEEEecchhhhhcccc---cCCCceEEEEecc
Q 018393 177 SFPVRQTSIASGDLIKWTKGFSIEDTVGEDVVGELTKAMERIGLDMRVAALVNDTIGTLAGGRY---HNKDAIAAVILGT 253 (356)
Q Consensus 177 SFP~~q~~i~~g~Li~wtKgF~~~~v~G~dv~~lL~~al~r~~l~v~v~aivNDTVaTLla~~y---~~~~~~iGlIlGT 253 (356)
.-|++. +....+. .....+..+.|+.+.|++.+ ++| +.+-||..+..++-.+ .+.+..+-+-+||
T Consensus 64 pG~vd~-----~~~~~~~-~~~~~~w~~~~l~~~l~~~~---~~p---v~v~NDa~a~a~aE~~~g~~~~~~~~~l~ig~ 131 (291)
T PRK05082 64 TGIIND-----GILTALN-PHNLGGLLHFPLVQTLEQLT---DLP---TIALNDAQAAAWAEYQALPDDIRNMVFITVST 131 (291)
T ss_pred cccccC-----CeeEEec-CCCCccccCCChHHHHHHHh---CCC---EEEECcHHHHHHHHHHhcCCCCCCEEEEEECC
Confidence 767752 2221111 11122234567777776543 444 5799999988776543 2456788999999
Q ss_pred cccceeecccCCCCCcCCCCCCCCcEEEE
Q 018393 254 GTNAAYVERAHAIPKWHGLLPKSGEMVIN 282 (356)
Q Consensus 254 GtNacY~e~~~~I~k~~~~~~~~~~miIN 282 (356)
|.-++++.+-.-..-..+...+-++|.|+
T Consensus 132 GiG~giv~~G~~~~G~~g~AGEiGh~~v~ 160 (291)
T PRK05082 132 GVGGGIVLNGKLLTGPGGLAGHIGHTLAD 160 (291)
T ss_pred CcceEEEECCEEeeCCCCccccccceEec
Confidence 99999997643222112211233567765
No 19
>PF00480 ROK: ROK family; InterPro: IPR000600 A family of bacterial proteins has been described which groups transcriptional repressors, sugar kinases and yet uncharacterised open reading frames []. This family, known as ROK (Repressor, ORF, Kinase) includes the xylose operon repressor, xylR, from Bacillus subtilis, Lactobacillus pentosus and Staphylococcus xylosus; N-acetylglucosamine repressor, nagC, from Escherichia coli; glucokinase 2.7.1.2 from EC from Streptomyces coelicolor; fructokinase 2.7.1.4 from EC from Pediococcus pentosaceus, Streptococcus mutans and Zymomonas mobilis; allokinase 2.7.1.55 from EC and mlc from E. coli; and E. coli hypothetical proteins yajF and yhcI and the corresponding Haemophilus influenzae proteins. The repressor proteins (xylR and nagC) from this family possess an N-terminal region not present in the sugar kinases and which contains an helix-turn-helix DNA-binding motif.; PDB: 2GUP_A 3LM2_B 3EO3_A 2YHY_A 2YHW_A 2YI1_A 3MCP_A 1Z05_A 3HTV_A 3OHR_A ....
Probab=97.81 E-value=0.00041 Score=61.38 Aligned_cols=132 Identities=23% Similarity=0.396 Sum_probs=94.4
Q ss_pred EEEeCCceeEEEEEEEcCCcceeEEEEeEeeccCccccccCchHHHHHHHHHHHHHHhhcCCCCCCCCCcceeeeeeeee
Q 018393 99 ALDLGGTNFRVLRVQLGGREGRVVKQEFEEVSIPPHLMTGSSHELFDYIAAALAKFVATEGEGFHVSPGRQRELGFTFSF 178 (356)
Q Consensus 99 alDlGGTnlRv~~V~L~g~~~~~~~~~~~~~~Ip~~~~~~~~~~LFd~IA~~I~~fl~~~~~~~~~~~~~~l~lGfTFSF 178 (356)
+||+|+|+++++++++.|+ +... +.+++| .+.+++.+.+.+.+.+++.+.+. . -+|+.++=
T Consensus 1 gidig~~~i~~~l~d~~g~---ii~~--~~~~~~-----~~~~~~~~~l~~~i~~~~~~~~~--------~-gIgi~~pG 61 (179)
T PF00480_consen 1 GIDIGGTSIRIALVDLDGE---IIYS--ESIPTP-----TSPEELLDALAELIERLLADYGR--------S-GIGISVPG 61 (179)
T ss_dssp EEEEESSEEEEEEEETTSC---EEEE--EEEEHH-----SSHHHHHHHHHHHHHHHHHHHTC--------E-EEEEEESS
T ss_pred CEEECCCEEEEEEECCCCC---EEEE--EEEECC-----CCHHHHHHHHHHHHHHHHhhccc--------c-cEEEeccc
Confidence 5899999999999999763 3333 245555 46789999999999999887652 1 44555444
Q ss_pred eeeeccCCceEEEeeccceecCCCCCCcHHHHHHHHHHHcCCCceEEEEEecchhhhhccccc----CCCceEEEEeccc
Q 018393 179 PVRQTSIASGDLIKWTKGFSIEDTVGEDVVGELTKAMERIGLDMRVAALVNDTIGTLAGGRYH----NKDAIAAVILGTG 254 (356)
Q Consensus 179 P~~q~~i~~g~Li~wtKgF~~~~v~G~dv~~lL~~al~r~~l~v~v~aivNDTVaTLla~~y~----~~~~~iGlIlGTG 254 (356)
|++.. ++.++.... .+..+.++.+.|++.+ ++ ++.+.||..+..++-.+. +.+..+-+-+|||
T Consensus 62 ~v~~~---~g~i~~~~~----~~~~~~~l~~~l~~~~---~~---pv~i~Nd~~~~a~ae~~~~~~~~~~~~~~l~ig~G 128 (179)
T PF00480_consen 62 IVDSE---KGRIISSPN----PGWENIPLKEELEERF---GV---PVIIENDANAAALAEYWFGAAKDCDNFLYLYIGTG 128 (179)
T ss_dssp EEETT---TTEEEECSS----GTGTTCEHHHHHHHHH---TS---EEEEEEHHHHHHHHHHHHSTTTTTSSEEEEEESSS
T ss_pred cCcCC---CCeEEecCC----CCcccCCHHHHhhccc---ce---EEEEecCCCcceeehhhcCccCCcceEEEEEeecC
Confidence 55552 355554433 4455688988888877 33 568999999887766552 4467888999999
Q ss_pred ccceeecc
Q 018393 255 TNAAYVER 262 (356)
Q Consensus 255 tNacY~e~ 262 (356)
.-++++.+
T Consensus 129 iG~~ii~~ 136 (179)
T PF00480_consen 129 IGAGIIIN 136 (179)
T ss_dssp EEEEEEET
T ss_pred CCcceecc
Confidence 99999864
No 20
>PRK14101 bifunctional glucokinase/RpiR family transcriptional regulator; Provisional
Probab=97.73 E-value=0.00028 Score=75.58 Aligned_cols=187 Identities=18% Similarity=0.235 Sum_probs=98.2
Q ss_pred cccEEEEEeCCceeEEEEEEEcCCcceeEEEEeEeeccCccccccCchHHHHHHHHHHHHHHhhcCCCCCCCCCcceeee
Q 018393 94 KGLFYALDLGGTNFRVLRVQLGGREGRVVKQEFEEVSIPPHLMTGSSHELFDYIAAALAKFVATEGEGFHVSPGRQRELG 173 (356)
Q Consensus 94 ~G~fLalDlGGTnlRv~~V~L~g~~~~~~~~~~~~~~Ip~~~~~~~~~~LFd~IA~~I~~fl~~~~~~~~~~~~~~l~lG 173 (356)
-|-+|++|+||||.|++++.- ++ .+... +.++-+. |+.+.+.|.+|+++.+. .....+|
T Consensus 17 ~~~~L~iDIGGT~ir~al~~~--~g-~i~~~--~~~~t~~----------~~~~~~~i~~~l~~~~~------~~~~~ig 75 (638)
T PRK14101 17 DGPRLLADVGGTNARFALETG--PG-EITQI--RVYPGAD----------YPTLTDAIRKYLKDVKI------GRVNHAA 75 (638)
T ss_pred CCCEEEEEcCchhheeeeecC--CC-cccce--eEEecCC----------CCCHHHHHHHHHHhcCC------CCcceEE
Confidence 345999999999999999842 22 22221 2233221 34566667777765431 1223355
Q ss_pred eeeeeeeeeccCCceEEEeeccceecCCCCCCcHHHHHHHHHHHcCCCceEEEEEecchhhhhcc---------ccc---
Q 018393 174 FTFSFPVRQTSIASGDLIKWTKGFSIEDTVGEDVVGELTKAMERIGLDMRVAALVNDTIGTLAGG---------RYH--- 241 (356)
Q Consensus 174 fTFSFP~~q~~i~~g~Li~wtKgF~~~~v~G~dv~~lL~~al~r~~l~v~v~aivNDTVaTLla~---------~y~--- 241 (356)
+..-=|++...+...- +.|. + ++ + .|+++ +.+.++.+.||--+.-++- .+.
T Consensus 76 ig~pGpVd~~~~~~~n-l~w~--~--------~~-~----~l~~~-~g~~~v~l~ND~~aaA~ge~~l~~~e~~~~G~g~ 138 (638)
T PRK14101 76 IAIANPVDGDQVRMTN-HDWS--F--------SI-E----ATRRA-LGFDTLLVVNDFTALAMALPGLTDAQRVQVGGGT 138 (638)
T ss_pred EEEecCccCCeeeecC-CCcE--e--------cH-H----HHHHH-cCCCeEEEEchHHHHHcCCccCCHHHeEEeCCCC
Confidence 5555555532111100 1231 1 22 3 33333 3456789999999988883 111
Q ss_pred CCCceEEEEecc--cccceeecccCCCCCcCCCCCCCCcEEEEecCCCcCCCCCCCChhhHhh-hccCCCCCCceeeehh
Q 018393 242 NKDAIAAVILGT--GTNAAYVERAHAIPKWHGLLPKSGEMVINMEWGNFRSSHLPLTEYDEAL-DTESLNPGEQIFEKII 318 (356)
Q Consensus 242 ~~~~~iGlIlGT--GtNacY~e~~~~I~k~~~~~~~~~~miINtEwG~Fg~~~lp~T~~D~~v-D~~s~nPG~q~fEKmv 318 (356)
..+..+.+++|| |...|.+... +.+.++.-+|+|... ..|.+.-...+ ..-..+.|.-.+|..+
T Consensus 139 ~~~~~~~~~lGtGTGlG~a~lv~~-----------~g~~~~~g~E~GH~~--~~~~~~~e~~~~~~~~~~~g~~~~E~~~ 205 (638)
T PRK14101 139 RRQNSVIGLLGPGTGLGVSGLIPA-----------DDRWIALGSEGGHAS--FAPQDEREDLVLQYARKKYPHVSFERVC 205 (638)
T ss_pred CCCCCcEEEEECCccceeeEEEec-----------CCeeEECCCCccccC--CCCCCHHHHHHHHHHHHhcCcceeeeec
Confidence 223457788755 5665433221 112244556888763 12333211111 1011123455789999
Q ss_pred cccchHHHHHHHH
Q 018393 319 SGMYLGEIVRRVL 331 (356)
Q Consensus 319 SG~YLGEl~R~il 331 (356)
||.-|..+.|...
T Consensus 206 Sg~gL~~~~~~~~ 218 (638)
T PRK14101 206 AGPGMEIIYRALA 218 (638)
T ss_pred chhhHHHHHHHHH
Confidence 9999998887643
No 21
>PRK00292 glk glucokinase; Provisional
Probab=97.64 E-value=0.00076 Score=65.73 Aligned_cols=181 Identities=19% Similarity=0.209 Sum_probs=97.4
Q ss_pred cEEEEEeCCceeEEEEEEEcCCcceeEEEEeEeeccCccccccCchHHHHHHHHHHHHHHhh-cCCCCCCCCCcceeeee
Q 018393 96 LFYALDLGGTNFRVLRVQLGGREGRVVKQEFEEVSIPPHLMTGSSHELFDYIAAALAKFVAT-EGEGFHVSPGRQRELGF 174 (356)
Q Consensus 96 ~fLalDlGGTnlRv~~V~L~g~~~~~~~~~~~~~~Ip~~~~~~~~~~LFd~IA~~I~~fl~~-~~~~~~~~~~~~l~lGf 174 (356)
.+|++|+|||++|++++++.+. .+.. .+.++.+. .+. +.+.|.+++++ ... + ..|.
T Consensus 3 ~~lgiDIGgT~i~~~l~~~~~~--~~~~--~~~~~~~~------~~~----~~~~l~~~l~~~~~~-------~--~~gi 59 (316)
T PRK00292 3 PALVGDIGGTNARFALCDWANG--EIEQ--IKTYATAD------YPS----LEDAIRAYLADEHGV-------Q--VRSA 59 (316)
T ss_pred eEEEEEcCccceEEEEEecCCC--ceee--eEEEecCC------CCC----HHHHHHHHHHhccCC-------C--CceE
Confidence 3799999999999999987432 2222 12343331 122 44555566654 211 1 3455
Q ss_pred eeee--eeeeccCCceEEEeeccceecCCCCCCcHHHHHHHHHHHcCCCceEEEEEecchhhhhcccc------------
Q 018393 175 TFSF--PVRQTSIASGDLIKWTKGFSIEDTVGEDVVGELTKAMERIGLDMRVAALVNDTIGTLAGGRY------------ 240 (356)
Q Consensus 175 TFSF--P~~q~~i~~g~Li~wtKgF~~~~v~G~dv~~lL~~al~r~~l~v~v~aivNDTVaTLla~~y------------ 240 (356)
.++. |++.. ++ ..+ ..... . + .+. |+++ +.+..+.+.||.-+.-++-.+
T Consensus 60 gIg~pG~vd~~-----~i-~~~-n~~w~---~-~-~~~----l~~~-~~~p~v~l~ND~~aaalgE~~~~~~~~~~~g~~ 122 (316)
T PRK00292 60 CFAIAGPVDGD-----EV-RMT-NHHWA---F-S-IAA----MKQE-LGLDHLLLINDFTAQALAIPRLGEEDLVQIGGG 122 (316)
T ss_pred EEEEeCcccCC-----EE-Eec-CCCcc---c-C-HHH----HHHH-hCCCeEEEEecHHHHHcccccCCHhheeEeCCC
Confidence 6666 45431 21 111 11111 1 1 233 3333 345446899999998888653
Q ss_pred cC--CCceEEEEecccccceeecccCCCCCcCCCCCCCCcEEEEecCCCcCCCCCCCChhhHhh-hccCCCCCCceeeeh
Q 018393 241 HN--KDAIAAVILGTGTNAAYVERAHAIPKWHGLLPKSGEMVINMEWGNFRSSHLPLTEYDEAL-DTESLNPGEQIFEKI 317 (356)
Q Consensus 241 ~~--~~~~iGlIlGTGtNacY~e~~~~I~k~~~~~~~~~~miINtEwG~Fg~~~lp~T~~D~~v-D~~s~nPG~q~fEKm 317 (356)
.. .+..+.+.+|||..++.+.+- + .+....-.|+|... ..|..+-...+ ......-|.-.+|..
T Consensus 123 ~~~~~~~~~~v~~GTGiG~giv~~g-----~------~g~~g~agE~GH~~--~~~~~~~~~~~~~~~c~~~~~gclE~~ 189 (316)
T PRK00292 123 EPVPGAPIAVIGPGTGLGVAGLVPV-----D------GRWIVLPGEGGHVD--FAPRSEEEAQILQYLRAEFGHVSAERV 189 (316)
T ss_pred CCCCCCcEEEEEcCCcceEEEEEec-----C------CceEEccCCccccc--CCCCChHHHHHHHHHHHhcCCceeEee
Confidence 11 256788999999999998652 1 12334567777542 11211110000 000111234579999
Q ss_pred hcccchHHHHHH
Q 018393 318 ISGMYLGEIVRR 329 (356)
Q Consensus 318 vSG~YLGEl~R~ 329 (356)
+||.=|.++.|.
T Consensus 190 ~Sg~~L~~~~~~ 201 (316)
T PRK00292 190 LSGPGLVNLYRA 201 (316)
T ss_pred ecHHhHHHHHHH
Confidence 999988776554
No 22
>TIGR00749 glk glucokinase, proteobacterial type. This model represents glucokinase of E. coli and close homologs, mostly from other proteobacteria, presumed to have equivalent function. This glucokinase is more closely related to a number of uncharacterized paralogs than to the glucokinase glcK (fromerly yqgR) of Bacillus subtilis and its closest homologs, so the two sets are represented by separate models.
Probab=97.34 E-value=0.0013 Score=64.37 Aligned_cols=185 Identities=18% Similarity=0.209 Sum_probs=96.0
Q ss_pred EEEEeCCceeEEEEEEEcCCcceeEEEEeEeeccCccccccCchHHHHHHHHHHHHHHhhcCCCCCCCCCcceeeeeeee
Q 018393 98 YALDLGGTNFRVLRVQLGGREGRVVKQEFEEVSIPPHLMTGSSHELFDYIAAALAKFVATEGEGFHVSPGRQRELGFTFS 177 (356)
Q Consensus 98 LalDlGGTnlRv~~V~L~g~~~~~~~~~~~~~~Ip~~~~~~~~~~LFd~IA~~I~~fl~~~~~~~~~~~~~~l~lGfTFS 177 (356)
|++|+||||.|+++++-.+. .... . +. +. . +.++-+.+.|.+|+++.+.... ......|+..+
T Consensus 1 l~~DIGGT~i~~glvd~~g~--~l~~-~-~~---~~---~----~~~~~l~~~i~~~l~~~~~~~~---~~~~~~~Igi~ 63 (316)
T TIGR00749 1 LVGDIGGTNARLALCEIAPG--EISQ-A-KT---YS---G----LDFPSLEAVVRVYLEEHKVELK---DPIAKGCFAIA 63 (316)
T ss_pred CeEecCcceeeEEEEecCCC--ceee-e-EE---Ee---c----CCCCCHHHHHHHHHHhcccccC---CCcCeEEEEEe
Confidence 68999999999999965332 1111 1 11 11 0 1134455556666654331100 01223677777
Q ss_pred eeeeeccCCceEEEeeccceecCCCCCCcHHHHHHHHHHHcCCCceEEEEEecchhhhhcc--------ccc----CCCc
Q 018393 178 FPVRQTSIASGDLIKWTKGFSIEDTVGEDVVGELTKAMERIGLDMRVAALVNDTIGTLAGG--------RYH----NKDA 245 (356)
Q Consensus 178 FP~~q~~i~~g~Li~wtKgF~~~~v~G~dv~~lL~~al~r~~l~v~v~aivNDTVaTLla~--------~y~----~~~~ 245 (356)
-|++. +.+ ..+ .... ..++. .|++ + +.+..+.|.||.-+.-++- .+. ..+.
T Consensus 64 Gpv~~-----~~v-~~~-nl~w----~~~~~-~l~~----~-~g~~~V~l~ND~naaa~ge~~l~~~~~~~~g~~~~~~~ 126 (316)
T TIGR00749 64 CPITG-----DWV-AMT-NHTW----AFSIA-ELKQ----N-LGFSHLEIINDFTAVSYAIPGLKKEDLIQFGGAEPVEG 126 (316)
T ss_pred CcccC-----CEE-Eec-CCCC----eeCHH-HHHH----h-cCCCeEEEEecHHHHHcCCCCCCHHHeEEeCCCCCCCC
Confidence 78733 221 111 1111 02332 3333 2 3444679999999888884 332 2344
Q ss_pred eEEEEe--cccccceeecccCCCCCcCCCCCCCCcEEEEecCCCcCCCCCCCChhhHh----hhccCCCCCCceeeehhc
Q 018393 246 IAAVIL--GTGTNAAYVERAHAIPKWHGLLPKSGEMVINMEWGNFRSSHLPLTEYDEA----LDTESLNPGEQIFEKIIS 319 (356)
Q Consensus 246 ~iGlIl--GTGtNacY~e~~~~I~k~~~~~~~~~~miINtEwG~Fg~~~lp~T~~D~~----vD~~s~nPG~q~fEKmvS 319 (356)
.+.+++ |||...+.+.+.. +..-...-.|+|... ..|.+.-+.. +.... +.-.+|...|
T Consensus 127 ~~~v~lGtGtG~G~~~vi~~~----------~g~l~~~agE~GH~~--~~~~~~~~~~~~~~l~~~~---~~g~~E~~~S 191 (316)
T TIGR00749 127 KPIAILGAGTGLGVAHLIHQV----------DGRWVVLPGEGGHVD--FAPNSELEAIILEYLRAKI---GHVSAERVLS 191 (316)
T ss_pred CcEEEEecCCCceeeEEEEcC----------CCCEEECCCCccccc--CCCCCHHHHHHHHHHHHhc---CCceeeeeec
Confidence 578889 6666666554310 011123456776542 1122221111 11222 3457999999
Q ss_pred ccchHHHHHHHH
Q 018393 320 GMYLGEIVRRVL 331 (356)
Q Consensus 320 G~YLGEl~R~il 331 (356)
|.-|..+.|...
T Consensus 192 g~gl~~~~~~~~ 203 (316)
T TIGR00749 192 GPGLVNIYEALV 203 (316)
T ss_pred HHHHHHHHHHHH
Confidence 999998888754
No 23
>smart00732 YqgFc Likely ribonuclease with RNase H fold. YqgF proteins are likely to function as an alternative to RuvC in most bacteria, and could be the principal holliday junction resolvases in low-GC Gram-positive bacteria. In Spt6p orthologues, the catalytic residues are substituted indicating that they lack enzymatic functions.
Probab=97.22 E-value=0.0033 Score=50.28 Aligned_cols=48 Identities=19% Similarity=0.216 Sum_probs=30.0
Q ss_pred cEEEEEeCCceeEEEEEEEcCCcceeEEEEeEeeccCccccccCchHHHHHHHHHHHH
Q 018393 96 LFYALDLGGTNFRVLRVQLGGREGRVVKQEFEEVSIPPHLMTGSSHELFDYIAAALAK 153 (356)
Q Consensus 96 ~fLalDlGGTnlRv~~V~L~g~~~~~~~~~~~~~~Ip~~~~~~~~~~LFd~IA~~I~~ 153 (356)
.+|+||+|||+.++++++-.|. +.... + +|.. .+.+++++.+.+.+.+
T Consensus 2 ~ilgiD~Ggt~i~~a~~d~~g~---~~~~~--~--~~~~---~~~~~~~~~l~~~i~~ 49 (99)
T smart00732 2 RVLGLDPGRKGIGVAVVDETGK---LADPL--E--VIPR---TNKEADAARLKKLIKK 49 (99)
T ss_pred cEEEEccCCCeEEEEEECCCCC---EecCE--E--EEEe---cCcchHHHHHHHHHHH
Confidence 4899999999999999964332 22111 1 1111 1346777777776665
No 24
>PF02685 Glucokinase: Glucokinase; InterPro: IPR003836 Glucokinases 2.7.1.2 from EC are found in invertebrates and microorganisms and are highly specific for glucose. These enzymes phosphorylate glucose using ATP as a donor to give glucose-6-phosphate and ADP [].; GO: 0004340 glucokinase activity, 0005524 ATP binding, 0006096 glycolysis, 0051156 glucose 6-phosphate metabolic process; PDB: 1SZ2_B 1Q18_B 2Q2R_B.
Probab=96.98 E-value=0.0028 Score=62.56 Aligned_cols=184 Identities=22% Similarity=0.249 Sum_probs=101.6
Q ss_pred EEEEeCCceeEEEEEEEcCCcceeEEEEeEeeccCccccccCchHHHHHHHHHHHHHHhhcCCCCCCCCCcceeeeeeee
Q 018393 98 YALDLGGTNFRVLRVQLGGREGRVVKQEFEEVSIPPHLMTGSSHELFDYIAAALAKFVATEGEGFHVSPGRQRELGFTFS 177 (356)
Q Consensus 98 LalDlGGTnlRv~~V~L~g~~~~~~~~~~~~~~Ip~~~~~~~~~~LFd~IA~~I~~fl~~~~~~~~~~~~~~l~lGfTFS 177 (356)
|+-|+||||-|+++++..+....... .+.|+ ..+...|.+.+++.+.+. ..+ ..-|-.-||+
T Consensus 1 Lv~DIGGTn~Rlal~~~~~~~~~~~~--~~~~~------~~~~~s~~~~l~~~l~~~--~~~--------~~~p~~~~ia 62 (316)
T PF02685_consen 1 LVADIGGTNTRLALAEPDGGPLQLID--IRRYP------SADFPSFEDALADYLAEL--DAG--------GPEPDSACIA 62 (316)
T ss_dssp EEEEEETTEEEEEEEECTCGG-EEEE--EEEEE------GCCCCHHHHHHHHHHHHT--CHH--------HTCEEEEEEE
T ss_pred CeEEeCcccEEEEEEEcCCCCccccc--cEEEe------cCCcCCHHHHHHHHHHhc--ccC--------CCccceEEEE
Confidence 68899999999999988654311111 12333 234455666655544443 111 1124445666
Q ss_pred ee--eeeccCCceEEEeeccceecCCCCCCcHHHHHHHHHHHcCCCceEEEEEecchhhhhccccc-------------C
Q 018393 178 FP--VRQTSIASGDLIKWTKGFSIEDTVGEDVVGELTKAMERIGLDMRVAALVNDTIGTLAGGRYH-------------N 242 (356)
Q Consensus 178 FP--~~q~~i~~g~Li~wtKgF~~~~v~G~dv~~lL~~al~r~~l~v~v~aivNDTVaTLla~~y~-------------~ 242 (356)
.+ +.. ++.++..|. +.++. +.|.+ .+.++-+.++||=.|.-.+.-.. +
T Consensus 63 vAGPV~~---~~~~lTN~~--W~i~~-----------~~l~~-~lg~~~v~liNDfeA~a~gl~~L~~~~l~~l~~g~~~ 125 (316)
T PF02685_consen 63 VAGPVRD---GKVRLTNLP--WTIDA-----------DELAQ-RLGIPRVRLINDFEAQAYGLPALDPEDLVTLQPGEPD 125 (316)
T ss_dssp ESS-EET---TCEE-SSSC--CEEEH-----------HHCHC-CCT-TCEEEEEHHHHHHHHHHHHHHCCECCHCCEESS
T ss_pred EecCccC---CEEEecCCC--ccccH-----------HHHHH-HhCCceEEEEcccchheeccCCCCHHHeeeccCCCCC
Confidence 54 444 566666553 33322 22232 34455679999977765443321 2
Q ss_pred CCceEEE-EecccccceeecccCCCCCcCCCCCCCCcEEEEecCCCcCCCCCCCChhhHhhhc-cCCCCCCceeeehhcc
Q 018393 243 KDAIAAV-ILGTGTNAAYVERAHAIPKWHGLLPKSGEMVINMEWGNFRSSHLPLTEYDEALDT-ESLNPGEQIFEKIISG 320 (356)
Q Consensus 243 ~~~~iGl-IlGTGtNacY~e~~~~I~k~~~~~~~~~~miINtEwG~Fg~~~lp~T~~D~~vD~-~s~nPG~q~fEKmvSG 320 (356)
++..+.+ =.|||.+.|++.+.. .+..++-||.|.-+ .-|+++.+..+=. -...-+.=..|.++||
T Consensus 126 ~~~~~~Vig~GTGLG~a~l~~~~-----------~~~~v~~sEgGH~~--fap~~~~e~~l~~~l~~~~~~vs~E~vlSG 192 (316)
T PF02685_consen 126 PGGPRAVIGPGTGLGVALLVPDG-----------DGYYVLPSEGGHVD--FAPRTDEEAELLRFLRRRYGRVSVERVLSG 192 (316)
T ss_dssp TTS-EEEEEESSSEEEEEEEEET-----------TEEEEEEE-GGGSB-----SSHHHHHHHHHHHHHCTS-BHHHCSSH
T ss_pred CCCcEEEEEcCCCcEEEEEEecC-----------CceEeCCCcccccc--CCCCCHHHHHHHHHHHHhcCCceeEeecch
Confidence 2333333 369999999998842 34569999999763 4577766654421 0111155688999999
Q ss_pred cchHHHHHH
Q 018393 321 MYLGEIVRR 329 (356)
Q Consensus 321 ~YLGEl~R~ 329 (356)
+=|..|.+-
T Consensus 193 ~GL~~ly~~ 201 (316)
T PF02685_consen 193 RGLENLYRF 201 (316)
T ss_dssp HHHHHHHHH
T ss_pred hhHHHHHHH
Confidence 887776654
No 25
>PF01869 BcrAD_BadFG: BadF/BadG/BcrA/BcrD ATPase family; InterPro: IPR002731 This domain is found in the BadF (O07462 from SWISSPROT) and BadG (O07463 from SWISSPROT) proteins that are two subunits of Benzoyl-CoA reductase, that may be involved in ATP hydrolysis. The family also includes an activase subunit from the enzyme 2-hydroxyglutaryl-CoA dehydratase (P11568 from SWISSPROT). The hypothetical protein AQ_278 from Aquifex aeolicus O66634 from SWISSPROT contains two copies of this region suggesting that the family may structurally dimerise.; PDB: 2E2N_B 2E2Q_A 2E2P_B 2E2O_A 1ZBS_A 2CH6_A 2CH5_D 1ZC6_A 1HUX_A.
Probab=95.91 E-value=0.14 Score=48.72 Aligned_cols=137 Identities=20% Similarity=0.236 Sum_probs=80.0
Q ss_pred EEEEeCCceeEEEEEEEcCCcceeEEEEeEeeccCccccccCchHHHHHHHHHHHHHHhhcCCCCCCCCCcceeeeeeee
Q 018393 98 YALDLGGTNFRVLRVQLGGREGRVVKQEFEEVSIPPHLMTGSSHELFDYIAAALAKFVATEGEGFHVSPGRQRELGFTFS 177 (356)
Q Consensus 98 LalDlGGTnlRv~~V~L~g~~~~~~~~~~~~~~Ip~~~~~~~~~~LFd~IA~~I~~fl~~~~~~~~~~~~~~l~lGfTFS 177 (356)
|.||-|||..|+++++..|+ +... ...-|..+.....++...-|.+-|.+.++..+... ..+. .++|.
T Consensus 1 lGIDgGgTkt~~vl~d~~g~---il~~---~~~~~~n~~~~~~~~~~~~i~~~i~~~~~~~~~~~-----~~i~-~~~~g 68 (271)
T PF01869_consen 1 LGIDGGGTKTKAVLVDENGN---ILGR---GKGGGANYNSVGFEEAMENIKEAIEEALSQAGLSP-----DDIA-AICIG 68 (271)
T ss_dssp EEEEECSSEEEEEEEETTSE---EEEE---EEES-TTHHHHHHHHHHHHHHHHHHHHHHHHTTST-----TCCC-EEEEE
T ss_pred CEEeeChheeeeEEEeCCCC---EEEE---EEeCCCCCCCCCcchhhhHHHHHHHHHHHHcCCCc-----cccc-eeeee
Confidence 68999999999999987543 2222 22234444333356667777777888877665421 0010 00011
Q ss_pred eeeeeccCCceEEEeeccceecCCCCCCcHHHHHHHHHHHcCCCceEEEEEecchhhhhcccccCCCceEEEEecccccc
Q 018393 178 FPVRQTSIASGDLIKWTKGFSIEDTVGEDVVGELTKAMERIGLDMRVAALVNDTIGTLAGGRYHNKDAIAAVILGTGTNA 257 (356)
Q Consensus 178 FP~~q~~i~~g~Li~wtKgF~~~~v~G~dv~~lL~~al~r~~l~v~v~aivNDTVaTLla~~y~~~~~~iGlIlGTGtNa 257 (356)
.=|+...+...+-..+++.+ -+.+.||++..|.++.- ..-|-+|-|||+++
T Consensus 69 ----------------~aG~~~~~~~~~~~~~~~~~----------~v~~~~Da~~al~~~~~---~~giv~I~GTGS~~ 119 (271)
T PF01869_consen 69 ----------------AAGYGRAGDEQEFQEEIVRS----------EVIVVNDAAIALYGATA---EDGIVVIAGTGSIA 119 (271)
T ss_dssp ----------------EEEEEETTTTTHHHHHHHHH----------EEEEEEHHHHHHHHHST---SSEEEEEESSSEEE
T ss_pred ----------------EeeecCcccccchhhcceEE----------EEEEEHHHHHHhCCCCC---CcEEEEEcCCCceE
Confidence 11233333222111222222 56889999887776644 36688999999999
Q ss_pred eeecccCCCCCcCCCCCCCCcEEEEecCCCc
Q 018393 258 AYVERAHAIPKWHGLLPKSGEMVINMEWGNF 288 (356)
Q Consensus 258 cY~e~~~~I~k~~~~~~~~~~miINtEwG~F 288 (356)
..+.+ ++++.-.--||.+
T Consensus 120 ~~~~~-------------~g~~~r~gG~G~~ 137 (271)
T PF01869_consen 120 YGRDR-------------DGRVIRFGGWGHC 137 (271)
T ss_dssp EEEET-------------TSEEEEEEESCTT
T ss_pred EEEEc-------------CCcEEEeCCCCCC
Confidence 98753 2456666678875
No 26
>PF00370 FGGY_N: FGGY family of carbohydrate kinases, N-terminal domain; InterPro: IPR018484 It has been shown [] that four different type of carbohydrate kinases seem to be evolutionary related. These enzymes include L-fucolokinase (2.7.1.51 from EC) (gene fucK); gluconokinase (2.7.1.12 from EC) (gene gntK); glycerol kinase (2.7.1.30 from EC) (gene glpK); xylulokinase (2.7.1.17 from EC) (gene xylB); and L-xylulose kinase (2.7.1.53 from EC) (gene lyxK). These enzymes are proteins of from 480 to 520 amino acid residues. This entry represents the N-terminal domain of these proteins. It adopts a ribonuclease H-like fold and is structurally related to the C-terminal domain [, ].; GO: 0016773 phosphotransferase activity, alcohol group as acceptor, 0005975 carbohydrate metabolic process; PDB: 3G25_D 3GE1_D 2NLX_A 2ITM_A 2ZF5_Y 3L0Q_B 3GG4_B 3I8B_A 3H3O_C 3FLC_X ....
Probab=95.84 E-value=0.045 Score=51.08 Aligned_cols=59 Identities=19% Similarity=0.434 Sum_probs=42.0
Q ss_pred EEEEEeCCceeEEEEEEEcCCcceeEEEEeEeecc--C-ccccccCchHHHHHHHHHHHHHHhhc
Q 018393 97 FYALDLGGTNFRVLRVQLGGREGRVVKQEFEEVSI--P-PHLMTGSSHELFDYIAAALAKFVATE 158 (356)
Q Consensus 97 fLalDlGGTnlRv~~V~L~g~~~~~~~~~~~~~~I--p-~~~~~~~~~~LFd~IA~~I~~fl~~~ 158 (356)
||+||+|.|+.|+++++-.| .++...+..++. | +.....+.+++++.+.+++.+.++..
T Consensus 2 ~lgiDiGTts~K~~l~d~~g---~iv~~~~~~~~~~~~~~g~~e~d~~~~~~~~~~~~~~~~~~~ 63 (245)
T PF00370_consen 2 YLGIDIGTTSVKAVLFDEDG---KIVASASRPYPYYTPEPGWAEQDPDEIWEAICEALKELLSQA 63 (245)
T ss_dssp EEEEEECSSEEEEEEEETTS---CEEEEEEEEETEBCSSTTEEEE-HHHHHHHHHHHHHHHHHHC
T ss_pred EEEEEEcccceEEEEEeCCC---CEEEEEEEeeeeccccccccccChHHHHHHHHHHHHHHHhhc
Confidence 79999999999999998433 234433333432 2 12334578999999999999999876
No 27
>KOG1794 consensus N-Acetylglucosamine kinase [Carbohydrate transport and metabolism]
Probab=95.56 E-value=0.094 Score=51.36 Aligned_cols=158 Identities=18% Similarity=0.142 Sum_probs=91.4
Q ss_pred cccEEEEEeCCceeEEEEEEEcCCcceeEEEE---eEeeccCccccccCchHHHHHHHHHHHHHHhhcCCCCCCCCCcce
Q 018393 94 KGLFYALDLGGTNFRVLRVQLGGREGRVVKQE---FEEVSIPPHLMTGSSHELFDYIAAALAKFVATEGEGFHVSPGRQR 170 (356)
Q Consensus 94 ~G~fLalDlGGTnlRv~~V~L~g~~~~~~~~~---~~~~~Ip~~~~~~~~~~LFd~IA~~I~~fl~~~~~~~~~~~~~~l 170 (356)
.|-|..+|=|+|.-|+.+|.= +++..-+.. ...|.||. +-+|++|++.+.+...+...++..++
T Consensus 2 ~~~y~GvEGgaT~s~~Vivd~--~~~~~~~a~~~~Tnh~~ig~-----------~~~~~rie~~i~~A~~k~g~d~~~~l 68 (336)
T KOG1794|consen 2 KDFYGGVEGGATCSRLVIVDE--DGTILGRAVGGGTNHWLIGS-----------TTCASRIEDMIREAKEKAGWDKKGPL 68 (336)
T ss_pred CceeEeecCCcceeEEEEECC--CCCEeeEeeccccccccCCc-----------hHHHHHHHHHHHHHHhhcCCCccCcc
Confidence 467899999999999999853 322111110 11233332 23455555555543322211111111
Q ss_pred eeeeeeeeeeeeccCCceEEEeeccceecCCCCCCcHHHHHHHHHHHcCC-CceEEEEEecchhhhhcccccCCCceEEE
Q 018393 171 ELGFTFSFPVRQTSIASGDLIKWTKGFSIEDTVGEDVVGELTKAMERIGL-DMRVAALVNDTIGTLAGGRYHNKDAIAAV 249 (356)
Q Consensus 171 ~lGfTFSFP~~q~~i~~g~Li~wtKgF~~~~v~G~dv~~lL~~al~r~~l-~v~v~aivNDTVaTLla~~y~~~~~~iGl 249 (356)
+. =|...+++...|-++.|.+.|..+-. -.+=..|.||++++|.|+ +....-=|-|
T Consensus 69 ----------r~------------lgL~lSg~d~e~~~~~lv~~~R~~fps~ae~~~v~sDa~~sl~a~-t~g~~~GiVL 125 (336)
T KOG1794|consen 69 ----------RS------------LGLGLSGTDQEDKNRKLVTEFRDKFPSVAENFYVTSDADGSLAAA-TPGGEGGIVL 125 (336)
T ss_pred ----------ce------------eeeecccCCchhHHHHHHHHHHHhccchhheeeeehhHHHHHhhc-CCCCCCcEEE
Confidence 11 12344566667777788887776633 245578999999999987 5444556889
Q ss_pred EecccccceeecccCCCCCcCCC---CC----------CCCcEEEEecCCC
Q 018393 250 ILGTGTNAAYVERAHAIPKWHGL---LP----------KSGEMVINMEWGN 287 (356)
Q Consensus 250 IlGTGtNacY~e~~~~I~k~~~~---~~----------~~~~miINtEwG~ 287 (356)
|-|||+||--..+-....+-.+. .. ..-.|++..|=|.
T Consensus 126 iaGTgs~crl~~~DGs~~~~ggwg~~iGd~GSaywia~~Avq~vfda~dg~ 176 (336)
T KOG1794|consen 126 IAGTGSNCRLVNPDGSEKGAGGWGHMIGDGGSAYWIARQAVQMVFDAEDGF 176 (336)
T ss_pred EecCCceeEEECCCCCccCCCCCCCccCCCcchhhhhhhhhhheeehhcCc
Confidence 99999998766654444332221 00 1125888888775
No 28
>TIGR01315 5C_CHO_kinase FGGY-family pentulose kinase. This model represents a subfamily of the FGGY family of carbohydrate kinases. This subfamily is closely related to a set of ribulose kinases, and many members are designated ribitol kinase. However, the member from Klebsiella pneumoniae, from a ribitol catabolism operon, accepts D-ribulose and to a lesser extent D-arabinitol and ribitol (PubMed:9639934 and JW Lengeler, personal communication); its annotation in GenBank as ribitol kinase is imprecise and may have affected public annotation of related proteins.
Probab=94.26 E-value=0.29 Score=51.53 Aligned_cols=60 Identities=17% Similarity=0.292 Sum_probs=43.0
Q ss_pred EEEEEeCCceeEEEEEEEcCCcceeEEEEeEeecc--Cc-cccccCchHHHHHHHHHHHHHHhhcC
Q 018393 97 FYALDLGGTNFRVLRVQLGGREGRVVKQEFEEVSI--PP-HLMTGSSHELFDYIAAALAKFVATEG 159 (356)
Q Consensus 97 fLalDlGGTnlRv~~V~L~g~~~~~~~~~~~~~~I--p~-~~~~~~~~~LFd~IA~~I~~fl~~~~ 159 (356)
+|+||+|+|+.|++++...|+ ++...+.+++. |. .....+.+++++-+.+++.+.+++.+
T Consensus 2 ~lgID~GTts~Ka~l~d~~G~---i~~~~~~~~~~~~~~~g~~eqdp~~~~~~~~~~i~~~~~~~~ 64 (541)
T TIGR01315 2 YIGVDVGTGSARACIIDSTGD---ILALAAQNIKTWTPSSGLEGQSSVYIWQAICNCVKQVLAESK 64 (541)
T ss_pred EEEEEecCcCEEEEEEcCCCC---EEEEEEeeeeeccCCCCcccCCHHHHHHHHHHHHHHHHHHcC
Confidence 789999999999999976543 33333333332 32 23455788899999999999988754
No 29
>PRK10939 autoinducer-2 (AI-2) kinase; Provisional
Probab=94.04 E-value=0.23 Score=51.87 Aligned_cols=61 Identities=18% Similarity=0.228 Sum_probs=43.3
Q ss_pred cEEEEEeCCceeEEEEEEEcCCcceeEEEEeEeeccC-----ccccccCchHHHHHHHHHHHHHHhhcC
Q 018393 96 LFYALDLGGTNFRVLRVQLGGREGRVVKQEFEEVSIP-----PHLMTGSSHELFDYIAAALAKFVATEG 159 (356)
Q Consensus 96 ~fLalDlGGTnlRv~~V~L~g~~~~~~~~~~~~~~Ip-----~~~~~~~~~~LFd~IA~~I~~fl~~~~ 159 (356)
-+|+||+|.|+.|+++++..|+ +....+.+|+.+ +.....+.+++++-+.++|.+.+++.+
T Consensus 4 ~~lgID~GTts~Ka~l~d~~G~---~l~~~~~~~~~~~~~~~~g~~Eqd~~~~w~~~~~~l~~~~~~~~ 69 (520)
T PRK10939 4 YLMALDAGTGSIRAVIFDLNGN---QIAVGQAEWRHLAVPDVPGSMEFDLEKNWQLACQCIRQALQKAG 69 (520)
T ss_pred EEEEEecCCCceEEEEECCCCC---EEEEEeccccccCCCCCCCCeeECHHHHHHHHHHHHHHHHHHcC
Confidence 3789999999999999987553 333333344321 223344688999999999999987654
No 30
>TIGR01314 gntK_FGGY gluconate kinase, FGGY type. Gluconate is derived from glucose in two steps. This model describes one form of gluconate kinase, belonging to the FGGY family of carbohydrate kinases. Gluconate kinase phosphoryates gluconate for entry into the Entner-Douderoff pathway.
Probab=93.49 E-value=0.25 Score=51.40 Aligned_cols=60 Identities=13% Similarity=0.297 Sum_probs=42.0
Q ss_pred EEEEEeCCceeEEEEEEEcCCcceeEEEEeEeec--cCc-cccccCchHHHHHHHHHHHHHHhhcC
Q 018393 97 FYALDLGGTNFRVLRVQLGGREGRVVKQEFEEVS--IPP-HLMTGSSHELFDYIAAALAKFVATEG 159 (356)
Q Consensus 97 fLalDlGGTnlRv~~V~L~g~~~~~~~~~~~~~~--Ip~-~~~~~~~~~LFd~IA~~I~~fl~~~~ 159 (356)
+|+||+|+|+.|++++...| .+....+.+++ .|. .....+.+++++-+.+++++.++..+
T Consensus 2 ~lgiDiGtt~~K~~l~d~~g---~i~~~~~~~~~~~~~~~g~~e~d~~~~~~~~~~~i~~~~~~~~ 64 (505)
T TIGR01314 2 MIGVDIGTTSTKAVLFEENG---KIVAKSSIGYPLYTPASGMAEENPEEIFEAVLVTIREVSINLE 64 (505)
T ss_pred EEEEeccccceEEEEEcCCC---CEEEEEEeecccccCCCCCeeeCHHHHHHHHHHHHHHHHHhCC
Confidence 68999999999999997644 23443433343 222 22344678899999999999987643
No 31
>TIGR01311 glycerol_kin glycerol kinase. This model describes glycerol kinase, a member of the FGGY family of carbohydrate kinases.
Probab=93.18 E-value=0.26 Score=51.11 Aligned_cols=60 Identities=22% Similarity=0.377 Sum_probs=41.6
Q ss_pred EEEEEeCCceeEEEEEEEcCCcceeEEEEeEeecc--Ccc-ccccCchHHHHHHHHHHHHHHhhcC
Q 018393 97 FYALDLGGTNFRVLRVQLGGREGRVVKQEFEEVSI--PPH-LMTGSSHELFDYIAAALAKFVATEG 159 (356)
Q Consensus 97 fLalDlGGTnlRv~~V~L~g~~~~~~~~~~~~~~I--p~~-~~~~~~~~LFd~IA~~I~~fl~~~~ 159 (356)
+|+||+|+|+.|++++...|+ ++...+.+++. |.. ....+.+++++-+.+++.+.+++.+
T Consensus 3 ~lgiDiGtt~iKa~l~d~~g~---~l~~~~~~~~~~~~~~g~~e~d~~~~~~~i~~~i~~~~~~~~ 65 (493)
T TIGR01311 3 ILAIDQGTTSSRAIVFDKDGN---IVAIHQKEFTQIFPKPGWVEHDPMEIWESVLSCIAEALAKAG 65 (493)
T ss_pred EEEEecCCCceEEEEECCCCC---EEEEEeeeccccCCCCCcEeeCHHHHHHHHHHHHHHHHHHcC
Confidence 789999999999999976442 33333333332 221 1233578899999999999988754
No 32
>PRK13318 pantothenate kinase; Reviewed
Probab=93.12 E-value=1.1 Score=42.74 Aligned_cols=95 Identities=22% Similarity=0.283 Sum_probs=47.4
Q ss_pred hhhhcccccCCCceEEEEecccccceeecccCCCCCcCCC--CCCCCcEEEEecCCCcCCCCCCCChhhHhhhccCCCCC
Q 018393 233 GTLAGGRYHNKDAIAAVILGTGTNAAYVERAHAIPKWHGL--LPKSGEMVINMEWGNFRSSHLPLTEYDEALDTESLNPG 310 (356)
Q Consensus 233 aTLla~~y~~~~~~iGlIlGTGtNacY~e~~~~I~k~~~~--~~~~~~miINtEwG~Fg~~~lp~T~~D~~vD~~s~nPG 310 (356)
+.+++++...+...+-+-+||++-..++.+-.. +.+. .|. -.+-.|+=.. +...+|..+.+ .....+|
T Consensus 113 a~~~aa~~~~~~~~ivid~GTA~t~d~v~~~g~---~~GG~I~PG-~~l~~~aL~~--~ta~Lp~~~~~----~~~~~~g 182 (258)
T PRK13318 113 VNAVAAYELYGGPLIVVDFGTATTFDVVSAKGE---YLGGVIAPG-INISADALFQ--RAAKLPRVEIT----KPDSVIG 182 (258)
T ss_pred HHHHHHHHHcCCCEEEEEcCCceEEEEEcCCCc---EEEEEECcc-HHHHHHHHHh--hhhcCCCCcCC----CCCccCC
Confidence 455555444455678888999998888854321 1110 000 0000000000 01124443322 2234478
Q ss_pred CceeeehhcccchHHH--HHHHHHHHHHc
Q 018393 311 EQIFEKIISGMYLGEI--VRRVLCRMAEE 337 (356)
Q Consensus 311 ~q~fEKmvSG~YLGEl--~R~ill~l~~~ 337 (356)
...-|-|-||.|.|-+ +..++.++.++
T Consensus 183 ~~T~~ai~~G~~~~~~~~i~~~~~~~~~~ 211 (258)
T PRK13318 183 KNTVEAMQSGIYYGYVGLVEGIVKRIKEE 211 (258)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8889999999876643 33344444443
No 33
>PRK15027 xylulokinase; Provisional
Probab=92.66 E-value=0.38 Score=49.77 Aligned_cols=60 Identities=18% Similarity=0.406 Sum_probs=43.9
Q ss_pred cEEEEEeCCceeEEEEEEEcCCcceeEEEEeEeecc--C-ccccccCchHHHHHHHHHHHHHHhhc
Q 018393 96 LFYALDLGGTNFRVLRVQLGGREGRVVKQEFEEVSI--P-PHLMTGSSHELFDYIAAALAKFVATE 158 (356)
Q Consensus 96 ~fLalDlGGTnlRv~~V~L~g~~~~~~~~~~~~~~I--p-~~~~~~~~~~LFd~IA~~I~~fl~~~ 158 (356)
.||+||+|.|+.|++++...| .++...+..+++ | +.....+.+++++.+.+++++.+++.
T Consensus 1 ~~lgID~GTts~Ka~l~d~~G---~vva~~~~~~~~~~~~~g~~eqd~~~~w~~~~~~~~~l~~~~ 63 (484)
T PRK15027 1 MYIGIDLGTSGVKVILLNEQG---EVVASQTEKLTVSRPHPLWSEQDPEQWWQATDRAMKALGDQH 63 (484)
T ss_pred CEEEEEecccceEEEEEcCCC---CEEEEEeecccccCCCCCccccCHHHHHHHHHHHHHHHHHhC
Confidence 389999999999999997644 344444445543 2 23344568889999999999998764
No 34
>PRK00047 glpK glycerol kinase; Provisional
Probab=92.55 E-value=0.33 Score=50.39 Aligned_cols=61 Identities=23% Similarity=0.365 Sum_probs=42.6
Q ss_pred cEEEEEeCCceeEEEEEEEcCCcceeEEEEeEeec--cCcc-ccccCchHHHHHHHHHHHHHHhhcC
Q 018393 96 LFYALDLGGTNFRVLRVQLGGREGRVVKQEFEEVS--IPPH-LMTGSSHELFDYIAAALAKFVATEG 159 (356)
Q Consensus 96 ~fLalDlGGTnlRv~~V~L~g~~~~~~~~~~~~~~--Ip~~-~~~~~~~~LFd~IA~~I~~fl~~~~ 159 (356)
.+|+||+|+|+.|+++++..|+ ++...+.+++ .|.. ....+.+++++-+.+++.+.+++.+
T Consensus 6 ~~lgiD~GTts~Ka~l~d~~g~---~~~~~~~~~~~~~~~~g~~e~d~~~~~~~~~~~~~~~~~~~~ 69 (498)
T PRK00047 6 YILALDQGTTSSRAIIFDHDGN---IVSVAQKEFTQIFPQPGWVEHDPNEIWASQLSVIAEALAKAG 69 (498)
T ss_pred EEEEEecCCCceEEEEECCCCC---EEEEEeeeccccCCCCCeEeeCHHHHHHHHHHHHHHHHHHcC
Confidence 3789999999999999976553 3333333443 2331 2234688899999999999987654
No 35
>COG2971 Predicted N-acetylglucosamine kinase [Carbohydrate transport and metabolism]
Probab=92.52 E-value=1.1 Score=44.15 Aligned_cols=122 Identities=21% Similarity=0.212 Sum_probs=75.8
Q ss_pred cEEEEEeCCceeEEEEEEEcCCcceeEEEEeEeeccCccccccCchHHHHHHHHHHHHHHhhcCCCCCCCCCcceeeeee
Q 018393 96 LFYALDLGGTNFRVLRVQLGGREGRVVKQEFEEVSIPPHLMTGSSHELFDYIAAALAKFVATEGEGFHVSPGRQRELGFT 175 (356)
Q Consensus 96 ~fLalDlGGTnlRv~~V~L~g~~~~~~~~~~~~~~Ip~~~~~~~~~~LFd~IA~~I~~fl~~~~~~~~~~~~~~l~lGfT 175 (356)
-||.||=|||..|..+-+.+|+ +.-+ -..=|.++.+...++=+.-|.+-|.+.+++.+.+. -.+-
T Consensus 6 ~~lGVDGGGTkt~a~l~~~~g~---vlg~---g~sGpAN~~~~~~e~A~~ni~~ai~~A~~~aG~~~---------~~i~ 70 (301)
T COG2971 6 YFLGVDGGGTKTRAVLADEDGN---VLGR---GKSGPANIQLVGKEEAVRNIKDAIREALDEAGLKP---------DEIA 70 (301)
T ss_pred EEEEEccCCcceEEEEEcCCCc---EEEE---eccCCceecccchHHHHHHHHHHHHHHHHhcCCCH---------HHhC
Confidence 4899999999999988875442 3322 12236677666668888889999999987665432 1111
Q ss_pred eeeeeeeccCCceEEEeeccceecCCCCCCcHHHHHHHHHHHcCCCce-EEEEEecchhhhhcccccCCCceEEEEeccc
Q 018393 176 FSFPVRQTSIASGDLIKWTKGFSIEDTVGEDVVGELTKAMERIGLDMR-VAALVNDTIGTLAGGRYHNKDAIAAVILGTG 254 (356)
Q Consensus 176 FSFP~~q~~i~~g~Li~wtKgF~~~~v~G~dv~~lL~~al~r~~l~v~-v~aivNDTVaTLla~~y~~~~~~iGlIlGTG 254 (356)
++.+-- +..|.+.....+ .+ .+.+++- -+.|.||....|.++-..+.-+ =+|+|||
T Consensus 71 ~~~agl-------------------a~ag~~~~~~~~-~~-~~~l~~a~~v~v~~Dg~iAl~ga~~~~~Gi--i~i~GTG 127 (301)
T COG2971 71 AIVAGL-------------------ALAGANVEEARE-EL-ERLLPFAGKVDVENDGLIALRGALGDDDGI--IVIAGTG 127 (301)
T ss_pred ceeeee-------------------eccCcchhHHHH-HH-HHhcCccceEEEecChHHHHhhccCCCCCE--EEEecCC
Confidence 111111 123344422222 22 4455655 7789999999999886555333 3688888
Q ss_pred c
Q 018393 255 T 255 (356)
Q Consensus 255 t 255 (356)
+
T Consensus 128 S 128 (301)
T COG2971 128 S 128 (301)
T ss_pred e
Confidence 4
No 36
>TIGR01234 L-ribulokinase L-ribulokinase. This enzyme catalyzes the second step in arabinose catabolism. The most closely related protein subfamily outside the scope of this model includes ribitol kinase from E. coli.
Probab=92.25 E-value=0.47 Score=49.85 Aligned_cols=60 Identities=20% Similarity=0.284 Sum_probs=44.5
Q ss_pred EEEEEeCCceeEEEEEE-EcCCcceeEEEEeEeec-------cC-------ccccccCchHHHHHHHHHHHHHHhhcC
Q 018393 97 FYALDLGGTNFRVLRVQ-LGGREGRVVKQEFEEVS-------IP-------PHLMTGSSHELFDYIAAALAKFVATEG 159 (356)
Q Consensus 97 fLalDlGGTnlRv~~V~-L~g~~~~~~~~~~~~~~-------Ip-------~~~~~~~~~~LFd~IA~~I~~fl~~~~ 159 (356)
+|+||+|.|+.|+++++ ..|+ ++...++.++ .| ......+.+++++-+.+++.+.+++.+
T Consensus 3 ~lgiD~GTss~Ka~l~d~~~G~---~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~Eqdp~~~w~~~~~~~~~~~~~~~ 77 (536)
T TIGR01234 3 AIGVDFGTLSGRALAVDVATGE---EIATAVEWYRHWVKGQFLPKTGAKLPNDQALQHPADYIEVLEAAIPTVLAELG 77 (536)
T ss_pred EEEEecCCCceEEEEEECCCCc---EeeeeeeccccccccccCCCccccCCCCccccCHHHHHHHHHHHHHHHHHHcC
Confidence 78999999999999998 6653 3333444454 23 344556789999999999999987653
No 37
>TIGR01312 XylB D-xylulose kinase. D-xylulose kinase (XylB) generally is found with xylose isomerase (XylA) and acts in xylose utilization.
Probab=91.62 E-value=0.44 Score=48.79 Aligned_cols=60 Identities=18% Similarity=0.340 Sum_probs=42.2
Q ss_pred EEEEeCCceeEEEEEEEcCCcceeEEEEeEeecc---CccccccCchHHHHHHHHHHHHHHhhcCC
Q 018393 98 YALDLGGTNFRVLRVQLGGREGRVVKQEFEEVSI---PPHLMTGSSHELFDYIAAALAKFVATEGE 160 (356)
Q Consensus 98 LalDlGGTnlRv~~V~L~g~~~~~~~~~~~~~~I---p~~~~~~~~~~LFd~IA~~I~~fl~~~~~ 160 (356)
|+||+|.|++|++++.+.|+ ++...+..++. ++.....+.+++++-+++++.+++++++.
T Consensus 1 lgIDiGtt~ik~~l~d~~g~---i~~~~~~~~~~~~~~~g~~e~d~~~~~~~l~~~i~~~~~~~~~ 63 (481)
T TIGR01312 1 LGIDLGTSGVKALLVDEQGE---VIASGSAPHTVISPHPGWSEQDPEDWWDATEEAIKELLEQASE 63 (481)
T ss_pred CceeecCcceEEEEECCCCC---EEEEEeecccccCCCCCCeeeCHHHHHHHHHHHHHHHHHhcCC
Confidence 58999999999999987653 33333333332 12223456788999999999999987653
No 38
>PRK10331 L-fuculokinase; Provisional
Probab=91.58 E-value=0.7 Score=47.63 Aligned_cols=60 Identities=20% Similarity=0.254 Sum_probs=41.8
Q ss_pred cEEEEEeCCceeEEEEEEEcCCcceeEEEEeEeec--c--Cc-cccccCchHHHHHHHHHHHHHHhhc
Q 018393 96 LFYALDLGGTNFRVLRVQLGGREGRVVKQEFEEVS--I--PP-HLMTGSSHELFDYIAAALAKFVATE 158 (356)
Q Consensus 96 ~fLalDlGGTnlRv~~V~L~g~~~~~~~~~~~~~~--I--p~-~~~~~~~~~LFd~IA~~I~~fl~~~ 158 (356)
-+|+||+|.|+.|++++..+|+ +....+..++ + |. .....+.+++++-+.+++.+.+++.
T Consensus 3 ~~lgID~GTt~~Ka~l~d~~G~---~~~~~~~~~~~~~~~~~~g~~eqd~~~~w~~~~~~~~~~~~~~ 67 (470)
T PRK10331 3 VILVLDCGATNVRAIAVDRQGK---IVARASTPNASDIAAENSDWHQWSLDAILQRFADCCRQINSEL 67 (470)
T ss_pred eEEEEecCCCceEEEEEcCCCc---EEEEEecccccccCCCCCCCcccCHHHHHHHHHHHHHHHHHhC
Confidence 4799999999999999987553 3333333332 1 11 2334567889999999999998753
No 39
>COG1070 XylB Sugar (pentulose and hexulose) kinases [Carbohydrate transport and metabolism]
Probab=91.54 E-value=0.54 Score=49.09 Aligned_cols=61 Identities=21% Similarity=0.329 Sum_probs=44.3
Q ss_pred cEEEEEeCCceeEEEEEEEcCCcceeEEEEeEeeccC--c-cccccCchHHHHHHHHHHHHHHhhc
Q 018393 96 LFYALDLGGTNFRVLRVQLGGREGRVVKQEFEEVSIP--P-HLMTGSSHELFDYIAAALAKFVATE 158 (356)
Q Consensus 96 ~fLalDlGGTnlRv~~V~L~g~~~~~~~~~~~~~~Ip--~-~~~~~~~~~LFd~IA~~I~~fl~~~ 158 (356)
-||+||+|.|+.|+.+++.++ ..+.......+... . .....+.++++..+.++|.+.+++.
T Consensus 5 ~~lgIDiGTt~~Kavl~d~~~--~~~~~~~~~~~~~~~~~~g~~e~d~~~~w~~~~~ai~~l~~~~ 68 (502)
T COG1070 5 YVLGIDIGTTSVKAVLFDEDG--GEVVATARFENPVSTPQPGWAEQDPDELWQAILEALRQLLEES 68 (502)
T ss_pred EEEEEEcCCCcEEEEEEeCCC--CeEEEEeeccccccCCCCCCcccCHHHHHHHHHHHHHHHHHhc
Confidence 489999999999999999874 23333333233322 1 2345678999999999999999875
No 40
>PTZ00294 glycerol kinase-like protein; Provisional
Probab=91.46 E-value=0.69 Score=48.18 Aligned_cols=61 Identities=16% Similarity=0.230 Sum_probs=42.7
Q ss_pred cEEEEEeCCceeEEEEEEEcCCcceeEEEEeEeecc--C-ccccccCchHHHHHHHHHHHHHHhhcC
Q 018393 96 LFYALDLGGTNFRVLRVQLGGREGRVVKQEFEEVSI--P-PHLMTGSSHELFDYIAAALAKFVATEG 159 (356)
Q Consensus 96 ~fLalDlGGTnlRv~~V~L~g~~~~~~~~~~~~~~I--p-~~~~~~~~~~LFd~IA~~I~~fl~~~~ 159 (356)
-+|+||+|.|+.|+++++..|+ ++...+.++++ | +.....+.+++++-+.++|.+.++...
T Consensus 3 ~~lgiDiGTts~Ka~l~d~~G~---~v~~~~~~~~~~~~~~g~~eqd~~~~~~~~~~~l~~~~~~~~ 66 (504)
T PTZ00294 3 YIGSIDQGTTSTRFIIFDEKGN---VVSSHQIPHEQITPHPGWLEHDPEEILRNVYKCMNEAIKKLR 66 (504)
T ss_pred EEEEEecCCCceEEEEECCCCC---EEEEEEEeecccCCCCCeEeeCHHHHHHHHHHHHHHHHHHcC
Confidence 3789999999999999986542 33333334432 2 223345678899999999999987643
No 41
>PLN02295 glycerol kinase
Probab=90.64 E-value=0.84 Score=47.66 Aligned_cols=60 Identities=20% Similarity=0.261 Sum_probs=43.5
Q ss_pred EEEEEeCCceeEEEEEEEcCCcceeEEEEeEeec--cCc-cccccCchHHHHHHHHHHHHHHhhcC
Q 018393 97 FYALDLGGTNFRVLRVQLGGREGRVVKQEFEEVS--IPP-HLMTGSSHELFDYIAAALAKFVATEG 159 (356)
Q Consensus 97 fLalDlGGTnlRv~~V~L~g~~~~~~~~~~~~~~--Ip~-~~~~~~~~~LFd~IA~~I~~fl~~~~ 159 (356)
+|+||+|.|+.|++++...|+ ++...+.+++ .|+ .....+.+++++-+.++|.+.+++..
T Consensus 2 vlgID~GTts~Ka~l~d~~G~---~~~~~~~~~~~~~~~~G~~Eqdp~~~w~~~~~~i~~~~~~~~ 64 (512)
T PLN02295 2 VGAIDQGTTSTRFIIYDRDAR---PVASHQVEFTQIYPQAGWVEHDPMEILESVLTCIAKALEKAA 64 (512)
T ss_pred EEEEecCCCceEEEEECCCCC---EEEEEeecccccCCCCCcEeeCHHHHHHHHHHHHHHHHHHcC
Confidence 689999999999999976553 3333333443 232 33455788999999999999988754
No 42
>TIGR02628 fuculo_kin_coli L-fuculokinase. Members of this family are L-fuculokinase, from the clade that includes the L-fuculokinase of Escherichia coli. This enzyme catalyzes the second step in fucose catabolism. This family belongs to FGGY family of carbohydrate kinases (pfam02782, pfam00370). It is encoded by the kinase (K) gene of the fucose (fuc) operon.
Probab=90.13 E-value=1 Score=46.49 Aligned_cols=58 Identities=17% Similarity=0.280 Sum_probs=41.3
Q ss_pred EEEEEeCCceeEEEEEEEcCCcceeEEEEeEeec----cC-ccccccCchHHHHHHHHHHHHHHhh
Q 018393 97 FYALDLGGTNFRVLRVQLGGREGRVVKQEFEEVS----IP-PHLMTGSSHELFDYIAAALAKFVAT 157 (356)
Q Consensus 97 fLalDlGGTnlRv~~V~L~g~~~~~~~~~~~~~~----Ip-~~~~~~~~~~LFd~IA~~I~~fl~~ 157 (356)
+|+||+|.|+.|+++++..|+ ++...+.+++ .| +.....+.+++++-+.+++.+.+.+
T Consensus 3 ilgiD~GTss~K~~l~d~~g~---~va~~~~~~~~~~~~~~~g~~eqd~~~~w~~~~~~~~~l~~~ 65 (465)
T TIGR02628 3 ILVLDCGATNLRAIAINRQGK---IVASASTPNATKQAIENNDYHIWDLEAIWQKLADCCQQINSE 65 (465)
T ss_pred EEEEecCCCcEEEEEEcCCCC---EEEEEecccccCCCCCCCCceeeCHHHHHHHHHHHHHHHHhh
Confidence 689999999999999986542 3443333333 12 2233456889999999999999864
No 43
>PRK04123 ribulokinase; Provisional
Probab=88.38 E-value=1.9 Score=45.39 Aligned_cols=61 Identities=20% Similarity=0.296 Sum_probs=41.2
Q ss_pred cEEEEEeCCceeEEEEEEE-cCCcceeEEEEeEeecc--------Cc-cccccCchHHHHHHHHHHHHHHhhcC
Q 018393 96 LFYALDLGGTNFRVLRVQL-GGREGRVVKQEFEEVSI--------PP-HLMTGSSHELFDYIAAALAKFVATEG 159 (356)
Q Consensus 96 ~fLalDlGGTnlRv~~V~L-~g~~~~~~~~~~~~~~I--------p~-~~~~~~~~~LFd~IA~~I~~fl~~~~ 159 (356)
.||+||+|.|+.|++++.. +|+ +....+..|+. |+ .....+.+++++-+.++|.+.+++.+
T Consensus 4 ~~lgiD~GTts~Ka~l~d~~~g~---~~~~~~~~~~~~~~~~~~~~~~g~~Eqdp~~~w~~~~~~i~~~~~~~~ 74 (548)
T PRK04123 4 YVIGLDFGTDSVRALLVDCATGE---ELATAVVEYPHWVKGRYLDLPPNQALQHPLDYIESLEAAIPAVLKEAG 74 (548)
T ss_pred EEEEEecCCCceEEEEEECCCCc---EeEEEEeeccccccccccCCCCCceeeCHHHHHHHHHHHHHHHHHHcC
Confidence 4899999999999999985 553 33333334431 22 12334567889999999999886543
No 44
>TIGR01174 ftsA cell division protein FtsA. This bacterial cell division protein interacts with FtsZ, the bacterial homolog of tubulin. It is an ATP-binding protein and shows structural similarities to actin and heat shock cognate protein 70.
Probab=86.08 E-value=25 Score=34.96 Aligned_cols=35 Identities=20% Similarity=0.316 Sum_probs=25.8
Q ss_pred CCcHHHHHHHHHHHcCCCceEEEEEecchhhhhcccc
Q 018393 204 GEDVVGELTKAMERIGLDMRVAALVNDTIGTLAGGRY 240 (356)
Q Consensus 204 G~dv~~lL~~al~r~~l~v~v~aivNDTVaTLla~~y 240 (356)
-++.++.+.++++.-| +++..++++.+|...+..+
T Consensus 156 ~~~~v~~~~~~~~~aG--l~~~~i~~~~~A~a~a~~~ 190 (371)
T TIGR01174 156 SSTILRNLVKCVERCG--LEVDNIVLSGLASAIAVLT 190 (371)
T ss_pred EHHHHHHHHHHHHHcC--CCeeeEEEhhhhhhhhhcC
Confidence 3467777788888777 4567789999998876533
No 45
>COG0837 Glk Glucokinase [Carbohydrate transport and metabolism]
Probab=85.39 E-value=11 Score=37.36 Aligned_cols=101 Identities=23% Similarity=0.200 Sum_probs=69.9
Q ss_pred HcCCCceEEEEEecchhhhhcccccC-------------CCceEEEE-ecccccceeecccCCCCCcCCCCCCCCcEEEE
Q 018393 217 RIGLDMRVAALVNDTIGTLAGGRYHN-------------KDAIAAVI-LGTGTNAAYVERAHAIPKWHGLLPKSGEMVIN 282 (356)
Q Consensus 217 r~~l~v~v~aivNDTVaTLla~~y~~-------------~~~~iGlI-lGTGtNacY~e~~~~I~k~~~~~~~~~~miIN 282 (356)
|..+.++=+.++||=+|.-++-.... ++..+++| =|||-=.|++.+.. .+-+.+-
T Consensus 91 r~~Lgl~~v~liNDF~A~A~Ai~~l~~~dl~qigg~~~~~~a~~avlGPGTGLGVa~Lv~~~-----------~~w~~lp 159 (320)
T COG0837 91 RAELGLDHLSLINDFAAQALAIPRLGAEDLEQIGGGKPEPNAPRAVLGPGTGLGVAGLVPNG-----------GGWIPLP 159 (320)
T ss_pred HHhcCCCcEEEechHHHHHhhccccCHHHHHHhcCCCCCCCCceEEEcCCCCcceEEEEecC-----------CeeEecc
Confidence 44566777899999998877766642 23333322 36777788887742 2467888
Q ss_pred ecCCCcCCCCCCCChhhHhhhcc-CCCCCCceeeehhcccchHHHHHHH
Q 018393 283 MEWGNFRSSHLPLTEYDEALDTE-SLNPGEQIFEKIISGMYLGEIVRRV 330 (356)
Q Consensus 283 tEwG~Fg~~~lp~T~~D~~vD~~-s~nPG~q~fEKmvSG~YLGEl~R~i 330 (356)
+|=|.- +.-|+|+-|..+=+. ..+-|.-.-|..+||+=|=-|.|-+
T Consensus 160 ~EGGHv--df~P~~~~E~~i~~~l~~~~GrVS~Er~LSG~GL~~iY~al 206 (320)
T COG0837 160 GEGGHV--DFAPRSEREFQILEYLRARFGRVSAERVLSGPGLVNLYRAL 206 (320)
T ss_pred CCCccc--cCCCCCHHHHHHHHHHHHhcCccchhhhcccccHHHHHHHH
Confidence 998875 356899888877532 3345777889999999887766653
No 46
>PRK13321 pantothenate kinase; Reviewed
Probab=85.37 E-value=2 Score=40.86 Aligned_cols=48 Identities=21% Similarity=0.376 Sum_probs=28.5
Q ss_pred EEEEEeCCceeEEEEEEEcCCcceeEEEEeEeeccCccccccCchHHHHHHHHHHHH
Q 018393 97 FYALDLGGTNFRVLRVQLGGREGRVVKQEFEEVSIPPHLMTGSSHELFDYIAAALAK 153 (356)
Q Consensus 97 fLalDlGGTnlRv~~V~L~g~~~~~~~~~~~~~~Ip~~~~~~~~~~LFd~IA~~I~~ 153 (356)
+|+||+|||++|+++++ .+ .+.. .+.+|-... .+.+++++.+.+.+.+
T Consensus 2 iL~IDIGnT~ik~gl~~-~~---~i~~----~~~~~T~~~-~~~~~~~~~l~~l~~~ 49 (256)
T PRK13321 2 LLLIDVGNTNIKLGVFD-GD---RLLR----SFRLPTDKS-RTSDELGILLLSLFRH 49 (256)
T ss_pred EEEEEECCCeEEEEEEE-CC---EEEE----EEEEecCCC-CCHHHHHHHHHHHHHH
Confidence 68999999999999996 22 2222 233443221 2345666666554443
No 47
>TIGR02627 rhamnulo_kin rhamnulokinase. This model describes rhamnulokinase, an enzyme that catalyzes the second step in rhamnose catabolism.
Probab=84.86 E-value=2.2 Score=43.81 Aligned_cols=59 Identities=19% Similarity=0.095 Sum_probs=37.9
Q ss_pred EEEEeCCceeEEEEEEEcCCcceeE-EEEeEeecc--Ccc-ccccCchHHHHHHHHHHHHHHh
Q 018393 98 YALDLGGTNFRVLRVQLGGREGRVV-KQEFEEVSI--PPH-LMTGSSHELFDYIAAALAKFVA 156 (356)
Q Consensus 98 LalDlGGTnlRv~~V~L~g~~~~~~-~~~~~~~~I--p~~-~~~~~~~~LFd~IA~~I~~fl~ 156 (356)
||||+|.|+.|++++..++.+..+. ....+..+. |.+ ....+.+++++.+.+++++...
T Consensus 1 ~aiD~Gtt~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~~ 63 (454)
T TIGR02627 1 VAVDLGASSGRVMLASYENECQKLTLEEIHRFKNGLVSQNGHECWDIDALEQEIRLGLNKVDA 63 (454)
T ss_pred CcEeccCCchheEEEEEcCCCceEEEEEEEeCCCCCEeECCEEEEehHHHHHHHHHHHHHHhc
Confidence 6899999999999999975423333 222222211 111 1123466899999999998865
No 48
>TIGR01175 pilM type IV pilus assembly protein PilM. This protein is required for the assembly of the type IV fimbria in Pseudomonas aeruginosa responsible for twitching motility, and for a similar pilus-like structure in Synechocystis. It is also found in species such as Deinococcus described as having natural transformation (for which a type IV pilus-like structure is proposed) but not fimbria.
Probab=82.08 E-value=18 Score=35.36 Aligned_cols=101 Identities=16% Similarity=0.265 Sum_probs=58.9
Q ss_pred cEEEEEeCCceeEEEEEEEcCCcceeEEEEeEeeccCcccc-ccCchHHHHHHHHHHHHHHhhcCCCCCCCCCcceeeee
Q 018393 96 LFYALDLGGTNFRVLRVQLGGREGRVVKQEFEEVSIPPHLM-TGSSHELFDYIAAALAKFVATEGEGFHVSPGRQRELGF 174 (356)
Q Consensus 96 ~fLalDlGGTnlRv~~V~L~g~~~~~~~~~~~~~~Ip~~~~-~~~~~~LFd~IA~~I~~fl~~~~~~~~~~~~~~l~lGf 174 (356)
.+++||+|.+++|++.++-.+++..+. .....++|.+.. .+.-.+ .+-+++.|.+.+++.+... + -.
T Consensus 4 ~~vgiDIg~~~Ik~v~~~~~~~~~~v~--~~~~~~~p~~~i~~g~i~d-~~~~~~~l~~~~~~~~~~~-----k----~v 71 (348)
T TIGR01175 4 LLVGIDIGSTSVKVAQLKRSGDRYKLE--HYAVEPLPAGIFTEGHIVE-YQAVAEALKELLSELGINT-----K----KA 71 (348)
T ss_pred cEEEEEeccCeEEEEEEEecCCceEEE--EEEEEECCCCcccCCCccC-HHHHHHHHHHHHHHcCCCc-----c----eE
Confidence 589999999999998887544332222 333566776643 332111 3456777777777655321 1 23
Q ss_pred eeeeeeeeccCCceEEEeeccceecCC-CCCCcHHHHHHHHHHH
Q 018393 175 TFSFPVRQTSIASGDLIKWTKGFSIED-TVGEDVVGELTKAMER 217 (356)
Q Consensus 175 TFSFP~~q~~i~~g~Li~wtKgF~~~~-v~G~dv~~lL~~al~r 217 (356)
.+++|..+.- +|-+.++. +-.+++.+.+.-..++
T Consensus 72 ~~alp~~~~~---------~r~~~~p~~i~~~el~~~i~~e~~~ 106 (348)
T TIGR01175 72 ATAVPGSAVI---------TKVIPVPAGLDERELEFAVYIEASH 106 (348)
T ss_pred EEEecCCeeE---------EEEEeCCCCCCHHHHHHHHHHHHHh
Confidence 6666665521 12355554 5567777777655444
No 49
>PRK13410 molecular chaperone DnaK; Provisional
Probab=81.45 E-value=4.3 Score=44.18 Aligned_cols=19 Identities=37% Similarity=0.471 Sum_probs=17.1
Q ss_pred ccEEEEEeCCceeEEEEEE
Q 018393 95 GLFYALDLGGTNFRVLRVQ 113 (356)
Q Consensus 95 G~fLalDlGGTnlRv~~V~ 113 (356)
|..++||||.||-.|++++
T Consensus 2 ~~viGIDlGTt~s~va~~~ 20 (668)
T PRK13410 2 GRIVGIDLGTTNSVVAVME 20 (668)
T ss_pred CcEEEEEeCCCcEEEEEEE
Confidence 5689999999999999885
No 50
>PRK15080 ethanolamine utilization protein EutJ; Provisional
Probab=81.08 E-value=14 Score=35.30 Aligned_cols=115 Identities=20% Similarity=0.248 Sum_probs=62.0
Q ss_pred CCCCccccEEEEEeCCceeEEEEEEEcCCcceeEEEEeEeeccCccccccCchHHHHHHHHHHHHHHhhcCCCCCCCCCc
Q 018393 89 PTGDEKGLFYALDLGGTNFRVLRVQLGGREGRVVKQEFEEVSIPPHLMTGSSHELFDYIAAALAKFVATEGEGFHVSPGR 168 (356)
Q Consensus 89 P~G~E~G~fLalDlGGTnlRv~~V~L~g~~~~~~~~~~~~~~Ip~~~~~~~~~~LFd~IA~~I~~fl~~~~~~~~~~~~~ 168 (356)
|.-+..+.+++||+|-|+.|+...+..+. .... .....+.++.|.-.+ ++-....|..+++....... .
T Consensus 18 ~~~~~~~~~~~iDiGSssi~~vv~~~~~~---~~~~---~~~~~~~vr~G~i~d-i~~a~~~i~~~~~~ae~~~g----~ 86 (267)
T PRK15080 18 PVATESPLKVGVDLGTANIVLAVLDEDGQ---PVAG---ALEWADVVRDGIVVD-FIGAVTIVRRLKATLEEKLG----R 86 (267)
T ss_pred CCCCCCCEEEEEEccCceEEEEEEcCCCC---EEEE---EeccccccCCCEEee-HHHHHHHHHHHHHHHHHHhC----C
Confidence 34456778999999999999988765332 1111 111222333343222 55566667777653211100 1
Q ss_pred ceeeeeeeeeeeeeccCCceEEEeeccceecCCCCCCcHHHHHHHHHHHcCCCceEEEEEecchhhhhcc
Q 018393 169 QRELGFTFSFPVRQTSIASGDLIKWTKGFSIEDTVGEDVVGELTKAMERIGLDMRVAALVNDTIGTLAGG 238 (356)
Q Consensus 169 ~l~lGfTFSFP~~q~~i~~g~Li~wtKgF~~~~v~G~dv~~lL~~al~r~~l~v~v~aivNDTVaTLla~ 238 (356)
..+--.+ +.|..++. .+ ...+.+++++.|++ +..++++..|...+.
T Consensus 87 ~i~~v~~-~vp~~~~~--------------------~~-~~~~~~~~~~aGl~--~~~ii~e~~A~a~~~ 132 (267)
T PRK15080 87 ELTHAAT-AIPPGTSE--------------------GD-PRAIINVVESAGLE--VTHVLDEPTAAAAVL 132 (267)
T ss_pred CcCeEEE-EeCCCCCc--------------------hh-HHHHHHHHHHcCCc--eEEEechHHHHHHHh
Confidence 1111122 56655431 01 12355777777755 567899999877653
No 51
>KOG2517 consensus Ribulose kinase and related carbohydrate kinases [Carbohydrate transport and metabolism]
Probab=78.51 E-value=18 Score=38.45 Aligned_cols=97 Identities=18% Similarity=0.186 Sum_probs=62.1
Q ss_pred cccEEEEEeCCceeEEEEEEE-cCCcceeEEEEeEeeccCc-cccccCchHHHHHHHHHHHHHHhhcCCCCCCCCCccee
Q 018393 94 KGLFYALDLGGTNFRVLRVQL-GGREGRVVKQEFEEVSIPP-HLMTGSSHELFDYIAAALAKFVATEGEGFHVSPGRQRE 171 (356)
Q Consensus 94 ~G~fLalDlGGTnlRv~~V~L-~g~~~~~~~~~~~~~~Ip~-~~~~~~~~~LFd~IA~~I~~fl~~~~~~~~~~~~~~l~ 171 (356)
...+++||.|-|.-|+++++- .++.-. ..+......-|+ .....+.++++.-+.+||+...++-... ..-.
T Consensus 5 ~~~~~gIDvGTtSaR~~v~~~~~~e~l~-~~~~~i~~~~~~~~~~eq~p~eI~~~V~~ci~~~~e~l~~~------~~~~ 77 (516)
T KOG2517|consen 5 EPVVLGIDVGTTSARALVFNAKNGELLS-LAQKEITQEFPKEGWVEQDPKEIWQAVCRCIEKACEKLGVL------NIKV 77 (516)
T ss_pred cceEEEEEcCCCceEEEEEecCCCccce-eeeeeeeeecCCCCeEEeCHHHHHHHHHHHHHHHHHhhccc------cccc
Confidence 456899999999999999973 222111 111111112233 3456678999999999999988765432 1233
Q ss_pred eeeeeeeeeeeccCCceEEEeeccceecCC
Q 018393 172 LGFTFSFPVRQTSIASGDLIKWTKGFSIED 201 (356)
Q Consensus 172 lGfTFSFP~~q~~i~~g~Li~wtKgF~~~~ 201 (356)
.|.|=|==+.| ....+-|.|....+.
T Consensus 78 ~~~~~igv~~q----r~~~v~w~~~tg~p~ 103 (516)
T KOG2517|consen 78 VGATCIGVVNQ----REGSVLWNKRTGEPL 103 (516)
T ss_pred cccEEEEEEec----CCceEEeecCCCCcc
Confidence 44555555666 557888988876555
No 52
>CHL00094 dnaK heat shock protein 70
Probab=78.20 E-value=6.3 Score=42.39 Aligned_cols=18 Identities=33% Similarity=0.361 Sum_probs=16.3
Q ss_pred cEEEEEeCCceeEEEEEE
Q 018393 96 LFYALDLGGTNFRVLRVQ 113 (356)
Q Consensus 96 ~fLalDlGGTnlRv~~V~ 113 (356)
.+++||||.||..++.++
T Consensus 3 ~viGIDlGTt~s~va~~~ 20 (621)
T CHL00094 3 KVVGIDLGTTNSVVAVME 20 (621)
T ss_pred ceEEEEeCcccEEEEEEE
Confidence 579999999999999885
No 53
>PTZ00186 heat shock 70 kDa precursor protein; Provisional
Probab=74.79 E-value=13 Score=40.52 Aligned_cols=33 Identities=21% Similarity=0.154 Sum_probs=23.2
Q ss_pred cceeeecccccCCCCCccccEEEEEeCCceeEEEEEE
Q 018393 77 KLKMLISYVDNLPTGDEKGLFYALDLGGTNFRVLRVQ 113 (356)
Q Consensus 77 ~l~MlPS~v~~lP~G~E~G~fLalDlGGTnlRv~~V~ 113 (356)
+...+-+|+.. | -.+.+++||||.||-.|+.++
T Consensus 13 ~~~~~~~~~~~-~---~~~~viGIDLGTTnS~vA~~~ 45 (657)
T PTZ00186 13 SAARLARHESQ-K---VQGDVIGVDLGTTYSCVATMD 45 (657)
T ss_pred hcccccccccC-c---ccceEEEEEeCcCeEEEEEEe
Confidence 34455555532 2 245799999999999999874
No 54
>COG1069 AraB Ribulose kinase [Energy production and conversion]
Probab=73.85 E-value=13 Score=39.55 Aligned_cols=98 Identities=15% Similarity=0.150 Sum_probs=65.2
Q ss_pred cEEEEEeCCceeEEEEEEEc-CCcceeEEEEeEeeccCccccccCchHHHHHHHHHHHHHHhhcCCCCCCCCCcceeeee
Q 018393 96 LFYALDLGGTNFRVLRVQLG-GREGRVVKQEFEEVSIPPHLMTGSSHELFDYIAAALAKFVATEGEGFHVSPGRQRELGF 174 (356)
Q Consensus 96 ~fLalDlGGTnlRv~~V~L~-g~~~~~~~~~~~~~~Ip~~~~~~~~~~LFd~IA~~I~~fl~~~~~~~~~~~~~~l~lGf 174 (356)
-+++||+|--.-|+++++.. |..-.........+.++......++++.+.-++.+|.+.+++.+... .--.|+
T Consensus 4 ~~iGvDvGTgSaRA~v~D~~~G~~la~a~~p~~~~~~~~~~~~q~s~d~~~av~~aVr~~v~~agv~~------~~V~gI 77 (544)
T COG1069 4 YVIGVDVGTGSARAGVFDCQTGTLLARAVRPYPMWQPGSNLAEQHSRDYWEAVCAAVRDVVAKAGVDP------ADVVGI 77 (544)
T ss_pred EEEEEeecCCceeEEEEEcCCCcchhhcccceeccccCccccccCHHHHHHHHHHHHHHHHHHcCCCh------hHeeEE
Confidence 37899999999999999986 43211111111223345555567899999999999999999877531 234677
Q ss_pred eeeeeeeeccCCc-eEEEeeccceec
Q 018393 175 TFSFPVRQTSIAS-GDLIKWTKGFSI 199 (356)
Q Consensus 175 TFSFP~~q~~i~~-g~Li~wtKgF~~ 199 (356)
.|+|-|.-.-+++ |.-+.....|.-
T Consensus 78 GvDaTcSlvv~d~~g~pl~v~~~~~~ 103 (544)
T COG1069 78 GVDATCSLVVIDRDGNPLAVLPEFPN 103 (544)
T ss_pred EEcceeeeEEECCCCCeeccCCCCCC
Confidence 7777776655544 366666665544
No 55
>PRK00290 dnaK molecular chaperone DnaK; Provisional
Probab=73.04 E-value=6.7 Score=42.17 Aligned_cols=18 Identities=33% Similarity=0.381 Sum_probs=16.4
Q ss_pred cEEEEEeCCceeEEEEEE
Q 018393 96 LFYALDLGGTNFRVLRVQ 113 (356)
Q Consensus 96 ~fLalDlGGTnlRv~~V~ 113 (356)
..++||||.||..|+.++
T Consensus 3 ~viGIDlGTt~s~va~~~ 20 (627)
T PRK00290 3 KIIGIDLGTTNSCVAVME 20 (627)
T ss_pred cEEEEEeCcccEEEEEEE
Confidence 579999999999999886
No 56
>PRK13324 pantothenate kinase; Reviewed
Probab=71.66 E-value=29 Score=33.39 Aligned_cols=47 Identities=17% Similarity=0.405 Sum_probs=29.2
Q ss_pred EEEEEeCCceeEEEEEEEcCCcceeEEEEeEeeccCccccccCchHHHHHHHHHH
Q 018393 97 FYALDLGGTNFRVLRVQLGGREGRVVKQEFEEVSIPPHLMTGSSHELFDYIAAAL 151 (356)
Q Consensus 97 fLalDlGGTnlRv~~V~L~g~~~~~~~~~~~~~~Ip~~~~~~~~~~LFd~IA~~I 151 (356)
.|+||.|=||.++++.+ ++ .... .++++-.-...+.++++-++...+
T Consensus 2 iL~iDiGNT~ik~gl~~--~~--~~~~----~~r~~t~~~~~t~de~~~~l~~~~ 48 (258)
T PRK13324 2 LLVMDMGNSHIHIGVFD--GD--RIVS----QIRYATSSVDSTSDQMGVFLRQAL 48 (258)
T ss_pred EEEEEeCCCceEEEEEE--CC--EEEE----EEEEecCccccchHHHHHHHHHHH
Confidence 58999999999999986 22 2221 355554222345666666665533
No 57
>PTZ00400 DnaK-type molecular chaperone; Provisional
Probab=71.35 E-value=12 Score=40.68 Aligned_cols=19 Identities=37% Similarity=0.429 Sum_probs=16.8
Q ss_pred ccEEEEEeCCceeEEEEEE
Q 018393 95 GLFYALDLGGTNFRVLRVQ 113 (356)
Q Consensus 95 G~fLalDlGGTnlRv~~V~ 113 (356)
|..++||||.||..|++++
T Consensus 41 ~~viGIDlGTt~s~va~~~ 59 (663)
T PTZ00400 41 GDIVGIDLGTTNSCVAIME 59 (663)
T ss_pred CcEEEEEECcccEEEEEEe
Confidence 4589999999999999874
No 58
>PRK05183 hscA chaperone protein HscA; Provisional
Probab=71.28 E-value=8.9 Score=41.30 Aligned_cols=20 Identities=40% Similarity=0.468 Sum_probs=17.1
Q ss_pred cccEEEEEeCCceeEEEEEE
Q 018393 94 KGLFYALDLGGTNFRVLRVQ 113 (356)
Q Consensus 94 ~G~fLalDlGGTnlRv~~V~ 113 (356)
....++||||.||-.|+.++
T Consensus 18 ~~~~iGIDlGTt~s~va~~~ 37 (616)
T PRK05183 18 RRLAVGIDLGTTNSLVATVR 37 (616)
T ss_pred CCeEEEEEeccccEEEEEEE
Confidence 33589999999999999874
No 59
>COG0554 GlpK Glycerol kinase [Energy production and conversion]
Probab=69.59 E-value=15 Score=38.52 Aligned_cols=106 Identities=25% Similarity=0.400 Sum_probs=70.3
Q ss_pred ccEEEEEeCCceeEEEEEEEcCCcceeEEEEe-EeeccCccccccCchHHHHHHHHHHHHHHhhcCCCCCCCCCcceeee
Q 018393 95 GLFYALDLGGTNFRVLRVQLGGREGRVVKQEF-EEVSIPPHLMTGSSHELFDYIAAALAKFVATEGEGFHVSPGRQRELG 173 (356)
Q Consensus 95 G~fLalDlGGTnlRv~~V~L~g~~~~~~~~~~-~~~~Ip~~~~~~~~~~LFd~IA~~I~~fl~~~~~~~~~~~~~~l~lG 173 (356)
.-+||||-|-|+-|..++.=.|+--.+.+... +.|+-| ..+..+..+++.-...++.+.+.+.+.. +.+.--+|
T Consensus 5 ~yIlAiDqGTTssRaivfd~~g~iva~~q~e~~Q~yP~~-GWVEhDp~eIw~~~~~~l~~a~~~~~i~----~~~iaaIG 79 (499)
T COG0554 5 KYILAIDQGTTSSRAIVFDEDGNIVAIAQREFTQIYPQP-GWVEHDPLEIWASVRSVLKEALAKAGIK----PGEIAAIG 79 (499)
T ss_pred cEEEEEecCCcceeEEEECCCCCchhhhhhhhhhhCCCC-CccccCHHHHHHHHHHHHHHHHHHcCCC----ccceEEEE
Confidence 45789999999999998855443211111111 223433 3567789999999999999998877543 34667889
Q ss_pred eeeeeeeeeccCCceEEEeecc--ceec------CCCCCCcHHHHHHHH
Q 018393 174 FTFSFPVRQTSIASGDLIKWTK--GFSI------EDTVGEDVVGELTKA 214 (356)
Q Consensus 174 fTFSFP~~q~~i~~g~Li~wtK--gF~~------~~v~G~dv~~lL~~a 214 (356)
+| +| +-+.+-|.| |=-+ .+--+.++++-|++.
T Consensus 80 IT-----NQ----RETtvvWdk~tG~Pi~naIvWQdrRTa~~c~~L~~~ 119 (499)
T COG0554 80 IT-----NQ----RETTVVWDKETGKPIYNAIVWQDRRTADICEELKAD 119 (499)
T ss_pred ee-----cc----ceeEEEEeCCCCCCcccceeeeccchHHHHHHHHhc
Confidence 87 56 889999998 4222 223455666666543
No 60
>PLN03184 chloroplast Hsp70; Provisional
Probab=67.63 E-value=16 Score=39.86 Aligned_cols=18 Identities=33% Similarity=0.412 Sum_probs=16.2
Q ss_pred cEEEEEeCCceeEEEEEE
Q 018393 96 LFYALDLGGTNFRVLRVQ 113 (356)
Q Consensus 96 ~fLalDlGGTnlRv~~V~ 113 (356)
..++||||.||-.|++++
T Consensus 40 ~viGIDlGTt~s~va~~~ 57 (673)
T PLN03184 40 KVVGIDLGTTNSAVAAME 57 (673)
T ss_pred CEEEEEeCcCcEEEEEEE
Confidence 489999999999999884
No 61
>PRK13320 pantothenate kinase; Reviewed
Probab=64.62 E-value=53 Score=31.24 Aligned_cols=17 Identities=18% Similarity=0.358 Sum_probs=16.1
Q ss_pred EEEEEeCCceeEEEEEE
Q 018393 97 FYALDLGGTNFRVLRVQ 113 (356)
Q Consensus 97 fLalDlGGTnlRv~~V~ 113 (356)
+|+||.|-|+++.++++
T Consensus 4 ~L~iDiGNT~ik~~~~~ 20 (244)
T PRK13320 4 NLVIDIGNTTTKLAVFE 20 (244)
T ss_pred EEEEEeCCCcEEEEEEE
Confidence 79999999999999987
No 62
>TIGR00241 CoA_E_activ CoA-substrate-specific enzyme activase, putative. This domain may be involved in generating or regenerating the active sites of enzymes related to (R)-2-hydroxyglutaryl-CoA dehydratase and benzoyl-CoA reductase.
Probab=63.97 E-value=26 Score=32.99 Aligned_cols=47 Identities=15% Similarity=0.224 Sum_probs=29.5
Q ss_pred EEEEEeCCceeEEEEEEEcCCcceeEEEEeEeeccCccccccCchHHHHHHHHHHHHHHhhc
Q 018393 97 FYALDLGGTNFRVLRVQLGGREGRVVKQEFEEVSIPPHLMTGSSHELFDYIAAALAKFVATE 158 (356)
Q Consensus 97 fLalDlGGTnlRv~~V~L~g~~~~~~~~~~~~~~Ip~~~~~~~~~~LFd~IA~~I~~fl~~~ 158 (356)
+++||+|.|+.|+++++ .+ .+.... +.=| +..++-.++.+.+.+++.
T Consensus 2 ~lGIDiGtts~K~vl~d-~g---~il~~~---~~~~--------~~~~~~~~~~l~~~~~~~ 48 (248)
T TIGR00241 2 SLGIDSGSTTTKMVLME-DG---KVIGYK---WLDT--------TPVIEETARAILEALKEA 48 (248)
T ss_pred EEEEEcChhheEEEEEc-CC---EEEEEE---EecC--------CCCHHHHHHHHHHHHHHc
Confidence 68999999999999996 33 233222 1112 234555667777776544
No 63
>PLN02669 xylulokinase
Probab=63.04 E-value=25 Score=37.44 Aligned_cols=63 Identities=17% Similarity=0.253 Sum_probs=38.2
Q ss_pred cCCCCCccccEEEEEeCCceeEEEEEEEcCCcceeEEEEeEeecc--Cccc----cccCch----------HHHHHHHHH
Q 018393 87 NLPTGDEKGLFYALDLGGTNFRVLRVQLGGREGRVVKQEFEEVSI--PPHL----MTGSSH----------ELFDYIAAA 150 (356)
Q Consensus 87 ~lP~G~E~G~fLalDlGGTnlRv~~V~L~g~~~~~~~~~~~~~~I--p~~~----~~~~~~----------~LFd~IA~~ 150 (356)
+||.+. -||+||+|.|++|+++++.+|+ ++...+..|.+ |+.- ...+.+ .+++-+..+
T Consensus 3 ~~~~~~---~~LGiD~GT~s~Ka~l~d~~g~---vv~~a~~~~~~~~~~~~~~~gve~dp~~~~~~~~~~~~w~~al~~~ 76 (556)
T PLN02669 3 SLPEDS---LFLGFDSSTQSLKATVLDSNLR---IVASEIVHFDSDLPHYGTKDGVYRDPKVNGRIVSPTLMWVEALDLL 76 (556)
T ss_pred CCCCCC---eEEEEecccCCeEEEEEcCCCC---EEEEEEecCCcccCcCCCCCceEeCCcccCccCCCHHHHHHHHHHH
Confidence 456533 4999999999999999976543 34333334431 2211 111222 455888888
Q ss_pred HHHHH
Q 018393 151 LAKFV 155 (356)
Q Consensus 151 I~~fl 155 (356)
+.+.+
T Consensus 77 l~~l~ 81 (556)
T PLN02669 77 LQKLA 81 (556)
T ss_pred HHHHH
Confidence 88865
No 64
>PTZ00009 heat shock 70 kDa protein; Provisional
Probab=62.43 E-value=21 Score=38.79 Aligned_cols=19 Identities=32% Similarity=0.191 Sum_probs=16.5
Q ss_pred ccEEEEEeCCceeEEEEEE
Q 018393 95 GLFYALDLGGTNFRVLRVQ 113 (356)
Q Consensus 95 G~fLalDlGGTnlRv~~V~ 113 (356)
+..++||||.||..|++++
T Consensus 4 ~~~iGIDlGTt~s~va~~~ 22 (653)
T PTZ00009 4 GPAIGIDLGTTYSCVGVWK 22 (653)
T ss_pred ccEEEEEeCcccEEEEEEe
Confidence 4589999999999999874
No 65
>TIGR00671 baf pantothenate kinase, type III. This model describes a family of proteins found in a single copy in at least ten different early completed bacterial genomes. The only characterized member of the family is Bvg accessory factor (Baf), a protein required, in addition to the regulatory operon bvgAS, for heterologous transcription of the Bordetella pertussis toxin operon (ptx) in E. coli.
Probab=58.15 E-value=69 Score=30.37 Aligned_cols=44 Identities=18% Similarity=0.288 Sum_probs=28.4
Q ss_pred EEEEeCCceeEEEEEEEcCCcceeEEEEeEeeccCccccccCchHHHHHHHHH
Q 018393 98 YALDLGGTNFRVLRVQLGGREGRVVKQEFEEVSIPPHLMTGSSHELFDYIAAA 150 (356)
Q Consensus 98 LalDlGGTnlRv~~V~L~g~~~~~~~~~~~~~~Ip~~~~~~~~~~LFd~IA~~ 150 (356)
|++|.|=||+++++.+ ++ .... .|++|-+.. .+.+++..++...
T Consensus 2 L~iDiGNT~i~~g~~~--~~--~~~~----~~r~~t~~~-~t~de~~~~l~~~ 45 (243)
T TIGR00671 2 LLIDVGNTRIVFALNS--GN--KVYQ----FWRLATNLM-KTYDEHSEFLKEL 45 (243)
T ss_pred EEEEECCCcEEEEEEE--CC--EEEE----EEEecCCCc-cChHHHHHHHHHH
Confidence 7999999999999985 22 2222 356665443 3567776665443
No 66
>PF00012 HSP70: Hsp70 protein; InterPro: IPR013126 Heat shock proteins, Hsp70 chaperones help to fold many proteins. Hsp70 assisted folding involves repeated cycles of substrate binding and release. Hsp70 activity is ATP dependent. Hsp70 proteins are made up of two regions: the amino terminus is the ATPase domain and the carboxyl terminus is the substrate binding region []. Hsp70 proteins have an average molecular weight of 70 kDa [, , ]. In most species,there are many proteins that belong to the hsp70 family. Some of these are only expressed under stress conditions (strictly inducible), while some are present in cells under normal growth conditions and are not heat-inducible (constitutive or cognate) [, ]. Hsp70 proteins can be found in different cellular compartments(nuclear, cytosolic, mitochondrial, endoplasmic reticulum, for example).; PDB: 2P32_D 3D2F_A 2QXL_A 3D2E_C 3C7N_A 3FE1_C 4ANI_C 2V7Y_A 2KHO_A 3DPQ_B ....
Probab=56.94 E-value=23 Score=37.33 Aligned_cols=50 Identities=24% Similarity=0.297 Sum_probs=29.2
Q ss_pred HHHHHHHHHHcCCCceEEEEEecchhhhhcccccCCC-ceEEEE--eccccccee
Q 018393 208 VGELTKAMERIGLDMRVAALVNDTIGTLAGGRYHNKD-AIAAVI--LGTGTNAAY 259 (356)
Q Consensus 208 ~~lL~~al~r~~l~v~v~aivNDTVaTLla~~y~~~~-~~iGlI--lGTGtNacY 259 (356)
.+.+.+|.+..|+ +++.++|+.+|..++.....+. ...=+| +|-||--+.
T Consensus 151 r~~~~~Aa~~agl--~~~~li~Ep~Aaa~~y~~~~~~~~~~vlv~D~Gggt~dvs 203 (602)
T PF00012_consen 151 RQALRDAAELAGL--NVLRLINEPTAAALAYGLERSDKGKTVLVVDFGGGTFDVS 203 (602)
T ss_dssp HHHHHHHHHHTT---EEEEEEEHHHHHHHHTTTTSSSSEEEEEEEEEESSEEEEE
T ss_pred hhccccccccccc--ccceeecccccccccccccccccccceeccccccceEeee
Confidence 3455566666675 5688999999988765444332 333333 455544333
No 67
>PRK13411 molecular chaperone DnaK; Provisional
Probab=54.27 E-value=39 Score=36.73 Aligned_cols=19 Identities=37% Similarity=0.464 Sum_probs=16.7
Q ss_pred ccEEEEEeCCceeEEEEEE
Q 018393 95 GLFYALDLGGTNFRVLRVQ 113 (356)
Q Consensus 95 G~fLalDlGGTnlRv~~V~ 113 (356)
+..++||||.||-.|++++
T Consensus 2 ~~viGIDlGTt~s~va~~~ 20 (653)
T PRK13411 2 GKVIGIDLGTTNSCVAVLE 20 (653)
T ss_pred CcEEEEEeCcccEEEEEEE
Confidence 3579999999999999875
No 68
>TIGR02350 prok_dnaK chaperone protein DnaK. Members of this family are the chaperone DnaK, of the DnaK-DnaJ-GrpE chaperone system. All members of the seed alignment were taken from completely sequenced bacterial or archaeal genomes and (except for Mycoplasma sequence) found clustered with other genes of this systems. This model excludes DnaK homologs that are not DnaK itself, such as the heat shock cognate protein HscA (TIGR01991). However, it is not designed to distinguish among DnaK paralogs in eukaryotes. Note that a number of dnaK genes have shadow ORFs in the same reverse (relative to dnaK) reading frame, a few of which have been assigned glutamate dehydrogenase activity. The significance of this observation is unclear; lengths of such shadow ORFs are highly variable as if the presumptive protein product is not conserved.
Probab=52.53 E-value=25 Score=37.43 Aligned_cols=17 Identities=35% Similarity=0.444 Sum_probs=15.4
Q ss_pred EEEEEeCCceeEEEEEE
Q 018393 97 FYALDLGGTNFRVLRVQ 113 (356)
Q Consensus 97 fLalDlGGTnlRv~~V~ 113 (356)
.++||||.||..++.++
T Consensus 2 viGIDlGtt~s~va~~~ 18 (595)
T TIGR02350 2 IIGIDLGTTNSCVAVME 18 (595)
T ss_pred EEEEEeCcccEEEEEEE
Confidence 58999999999999885
No 69
>PRK03657 hypothetical protein; Validated
Probab=51.90 E-value=56 Score=29.65 Aligned_cols=68 Identities=22% Similarity=0.425 Sum_probs=44.7
Q ss_pred HcCCCHHHHHH---HHHHHHHHHHHhhcCCCCCcceeeecccccCCCC----Cccc-cEEEEEeCCceeEEEEEEEcC
Q 018393 47 KCGTPIGKLRQ---VADAMTVEMHAGLASEGGSKLKMLISYVDNLPTG----DEKG-LFYALDLGGTNFRVLRVQLGG 116 (356)
Q Consensus 47 ~~~~~~~~L~~---i~~~f~~em~~gL~~~~~s~l~MlPS~v~~lP~G----~E~G-~fLalDlGGTnlRv~~V~L~g 116 (356)
.+.+|.+.|++ ++..-..+|-+|.....++++..--|-+.. |+| ++.| .|++|...+. ...-..++.|
T Consensus 70 lLgV~~~~i~~~gavS~e~A~~MA~g~~~~~~aDiala~TG~AG-P~g~~~~kpvGtV~iai~~~~~-~~~~~~~~~g 145 (170)
T PRK03657 70 ILSVSQQSLERYSAVSEAVVAEMATGAIERADADISIAISGYGG-PEGGEDGTPAGTVWFAWNIKGQ-TYTARMHFAG 145 (170)
T ss_pred hcCCCHHHHHhcCCCCHHHHHHHHHHHHHHcCCCEEEEeccccC-CCCCCCCCCCeEEEEEEEcCCc-EEEEEEecCC
Confidence 35578888877 788888888888765445677777777754 654 3556 4889977653 3333334433
No 70
>COG4972 PilM Tfp pilus assembly protein, ATPase PilM [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=51.90 E-value=87 Score=31.66 Aligned_cols=130 Identities=18% Similarity=0.282 Sum_probs=81.5
Q ss_pred cEEEEEeCCceeEEEEEEEcCCcceeEEEEeEeeccCccccccCchHHHHHHHHHHHHHHhhcCCCCCC-----C-----
Q 018393 96 LFYALDLGGTNFRVLRVQLGGREGRVVKQEFEEVSIPPHLMTGSSHELFDYIAAALAKFVATEGEGFHV-----S----- 165 (356)
Q Consensus 96 ~fLalDlGGTnlRv~~V~L~g~~~~~~~~~~~~~~Ip~~~~~~~~~~LFd~IA~~I~~fl~~~~~~~~~-----~----- 165 (356)
.-+.||+|-+..+++-.+-.|+ +..-.+...-++|+..+....--=.+-+++.|+..+.+++...+. +
T Consensus 11 ~~vGIdI~~~sVKvvqLs~~g~--~~kLe~y~~~~lp~~iv~dg~ivd~~av~~~Lk~ala~~gi~~k~aa~AVP~s~ai 88 (354)
T COG4972 11 AAVGIDIGSHSVKVVQLSRSGN--RYKLEKYASEPLPENIVADGKIVDYDAVASALKRALAKLGIKSKNAATAVPGSAAI 88 (354)
T ss_pred ceeeEeeccceEEEEEEcccCC--ceeeeeeeecccCccccccCCcccHHHHHHHHHHHHHhcCcchhhhhhhcCcccee
Confidence 3688999999999876653333 223334446778998876543334677888888888877654320 0
Q ss_pred ------C----Cc------ceeeeeeeeeeeeeccCCceEEEeeccceecCC----CCCCcHHHHHHHHHHHcCCCceEE
Q 018393 166 ------P----GR------QRELGFTFSFPVRQTSIASGDLIKWTKGFSIED----TVGEDVVGELTKAMERIGLDMRVA 225 (356)
Q Consensus 166 ------~----~~------~l~lGfTFSFP~~q~~i~~g~Li~wtKgF~~~~----v~G~dv~~lL~~al~r~~l~v~v~ 225 (356)
+ ++ ....+..++||++..+++==.|-.-.-+=.-.. .--+++++...+|++.-|+...|+
T Consensus 89 tk~i~vp~~lde~eL~~~V~~ea~~y~PyP~EEv~lDy~vlg~~~~~~e~v~Vll~AtrkE~v~~ri~a~~~AGl~~~vl 168 (354)
T COG4972 89 TKTIPVPDELDEKELEDQVESEASRYIPYPLEEVNLDYQVLGPSANEPEKVQVLLVATRKEVVESRIDAFELAGLEPKVL 168 (354)
T ss_pred eEEeccCCcccHHHHHHHHHHHHhhcCCCchhhcccceEEeccccCCCccEEEEEEEeehhhhHHHHHHHHHcCCCceEE
Confidence 0 00 124567899999998876444433222210000 134799999999999999875554
Q ss_pred EE
Q 018393 226 AL 227 (356)
Q Consensus 226 ai 227 (356)
-|
T Consensus 169 DV 170 (354)
T COG4972 169 DV 170 (354)
T ss_pred eh
Confidence 43
No 71
>smart00842 FtsA Cell division protein FtsA. FtsA is essential for bacterial cell division, and co-localizes to the septal ring with FtsZ. It has been suggested that the interaction of FtsA-FtsZ has arisen through coevolution in different bacterial strains PUBMED:9352931.
Probab=47.27 E-value=87 Score=27.98 Aligned_cols=57 Identities=18% Similarity=0.322 Sum_probs=34.5
Q ss_pred EEEEEeCCceeEEEEEEEcCCcc-eeEEEEeEeeccCc-cccccCchHHHHHHHHHHHHHHhhc
Q 018393 97 FYALDLGGTNFRVLRVQLGGREG-RVVKQEFEEVSIPP-HLMTGSSHELFDYIAAALAKFVATE 158 (356)
Q Consensus 97 fLalDlGGTnlRv~~V~L~g~~~-~~~~~~~~~~~Ip~-~~~~~~~~~LFd~IA~~I~~fl~~~ 158 (356)
|.+||+|-|+++++..+..+++. .+.... ..|. .+..|.-.+ .+-++++|.+.+++.
T Consensus 1 ~~~lDIGs~~ik~vv~~~~~~~~~~i~g~~----~~~s~gi~~G~I~d-~~~~~~~I~~ai~~a 59 (187)
T smart00842 1 IVGLDIGTSKIKALVAEVDEDGEINVIGVG----EVPSRGIRKGVIVD-IEAAARAIREAVEEA 59 (187)
T ss_pred CEEEEeccceEEEEEEEEcCCCCEEEEEEE----EecCCCccCcEEEC-HHHHHHHHHHHHHHH
Confidence 57999999999999999865443 222211 1243 355554333 445566666666644
No 72
>TIGR01991 HscA Fe-S protein assembly chaperone HscA. The Heat Shock Cognate proteins HscA and HscB act together as chaperones. HscA resembles DnaK but belongs in a separate clade. The apparent function is to aid assembly of iron-sulfur cluster proteins. Homologs from Buchnera and Wolbachia are clearly in the same clade but are highly derived and score lower than some examples of DnaK.
Probab=47.24 E-value=39 Score=36.30 Aligned_cols=16 Identities=44% Similarity=0.513 Sum_probs=14.7
Q ss_pred EEEEeCCceeEEEEEE
Q 018393 98 YALDLGGTNFRVLRVQ 113 (356)
Q Consensus 98 LalDlGGTnlRv~~V~ 113 (356)
++||||.||-.|+.++
T Consensus 2 iGIDlGTtns~va~~~ 17 (599)
T TIGR01991 2 VGIDLGTTNSLVASVR 17 (599)
T ss_pred EEEEEccccEEEEEEE
Confidence 7899999999999885
No 73
>TIGR00904 mreB cell shape determining protein, MreB/Mrl family. A close homolog is found in the Archaeon Methanobacterium thermoautotrophicum, and a more distant homolog in Archaeoglobus fulgidus. The family is related to cell division protein FtsA and heat shock protein DnaK.
Probab=45.91 E-value=2.9e+02 Score=26.87 Aligned_cols=45 Identities=11% Similarity=0.277 Sum_probs=28.7
Q ss_pred HHHHHHHHHcCCCceEEEEEecchhhhhcccccCCCceEEEEecccc
Q 018393 209 GELTKAMERIGLDMRVAALVNDTIGTLAGGRYHNKDAIAAVILGTGT 255 (356)
Q Consensus 209 ~lL~~al~r~~l~v~v~aivNDTVaTLla~~y~~~~~~iGlIlGTGt 255 (356)
+.++++++..| ++++.++|+.+|..++.........-++|+--|.
T Consensus 115 ~~~~~~~~~ag--~~~~~li~ep~aaa~~~g~~~~~~~~~lVvDiG~ 159 (333)
T TIGR00904 115 RAVKESALSAG--AREVYLIEEPMAAAIGAGLPVEEPTGSMVVDIGG 159 (333)
T ss_pred HHHHHHHHHcC--CCeEEEecCHHHHHHhcCCcccCCceEEEEEcCC
Confidence 44566666665 5678999999999887655433333345554443
No 74
>PRK13929 rod-share determining protein MreBH; Provisional
Probab=45.72 E-value=2.4e+02 Score=27.71 Aligned_cols=46 Identities=15% Similarity=0.395 Sum_probs=28.8
Q ss_pred HHHHHHHHcCCCceEEEEEecchhhhhcccccCCCceEEEEecccccc
Q 018393 210 ELTKAMERIGLDMRVAALVNDTIGTLAGGRYHNKDAIAAVILGTGTNA 257 (356)
Q Consensus 210 lL~~al~r~~l~v~v~aivNDTVaTLla~~y~~~~~~iGlIlGTGtNa 257 (356)
-+.++++..| ++++.++|+.+|..++.........-++|+--|...
T Consensus 116 ~l~~a~~~ag--~~~~~li~ep~Aaa~~~g~~~~~~~~~lvvDiG~gt 161 (335)
T PRK13929 116 AISDAVKNCG--AKNVHLIEEPVAAAIGADLPVDEPVANVVVDIGGGT 161 (335)
T ss_pred HHHHHHHHcC--CCeeEeecCHHHHHHhcCCCcCCCceEEEEEeCCCe
Confidence 3445555554 667789999999999865443334445665555333
No 75
>TIGR02707 butyr_kinase butyrate kinase. This model represents an enzyme family in which members are designated either butryate kinase or branched-chain carboxylic acid kinase. The EC designation 2.7.2.7 describes an enzyme with relatively broad specificity; gene products whose context suggests a role in metabolism of aliphatic amino acids are likely to act as branched-chain carboxylic acid kinase. The gene typically found adjacent, ptb (phosphate butyryltransferase), likewise encodes an enzyme that may have a broad specificity that includes a role in aliphatic amino acid cabolism.
Probab=45.48 E-value=45 Score=33.52 Aligned_cols=55 Identities=13% Similarity=0.289 Sum_probs=35.2
Q ss_pred EEEEEeCCceeEEEEEEEcCCcceeEEEEeEeeccC-ccccccCchHHHHHHH---HHHHHHHhhcC
Q 018393 97 FYALDLGGTNFRVLRVQLGGREGRVVKQEFEEVSIP-PHLMTGSSHELFDYIA---AALAKFVATEG 159 (356)
Q Consensus 97 fLalDlGGTnlRv~~V~L~g~~~~~~~~~~~~~~Ip-~~~~~~~~~~LFd~IA---~~I~~fl~~~~ 159 (356)
.|+|+.|||+.|+++++-.+ .+.... ..-+ +++ +..+..-|.++ +.|.+++++++
T Consensus 2 il~in~Gsts~k~alf~~~~---~~~~~~---~~~~~~~~--~~~~~~~~q~~~r~~~i~~~l~~~~ 60 (351)
T TIGR02707 2 ILVINPGSTSTKLAVFEDER---PLFEET---LRHSVEEL--GRFKNVIDQFEFRKQVILQFLEEHG 60 (351)
T ss_pred EEEEecCchhheEEEEeCCC---ceeeee---ecCCHHHh--cccccHHHHHHHHHHHHHHHHHHcC
Confidence 69999999999999986533 122211 1112 222 23456677777 88888888764
No 76
>PRK13322 pantothenate kinase; Reviewed
Probab=44.97 E-value=77 Score=30.13 Aligned_cols=44 Identities=14% Similarity=0.155 Sum_probs=26.5
Q ss_pred eecCCCCCCcHHHHHHHHHHHc-CCCceEEEEEecchhhhhcccccC
Q 018393 197 FSIEDTVGEDVVGELTKAMERI-GLDMRVAALVNDTIGTLAGGRYHN 242 (356)
Q Consensus 197 F~~~~v~G~dv~~lL~~al~r~-~l~v~v~aivNDTVaTLla~~y~~ 242 (356)
.-++.|.+..+.+.|++++++. ++++.. +-.+.-..=+..+|.+
T Consensus 51 v~vsSV~p~~~~~~l~~~l~~~~~~~~~~--v~~~~~~~gv~~~y~~ 95 (246)
T PRK13322 51 CRIVSVLSEEETARLVAILEKRLGIPVVF--AKVAAELAGVRNGYED 95 (246)
T ss_pred EEEEeCCCHHHHHHHHHHHHHHhCCCeEE--EecCCcCCCceecCCC
Confidence 4566788889999999999775 544322 3233332334455544
No 77
>PF05402 PqqD: Coenzyme PQQ synthesis protein D (PqqD); InterPro: IPR008792 This family contains several bacterial coenzyme PQQ synthesis protein D (PqqD) sequences. This protein is required for coenzyme pyrrolo-quinoline-quinone (PQQ) biosynthesis.; PDB: 3G2B_A.
Probab=41.16 E-value=68 Score=23.59 Aligned_cols=34 Identities=6% Similarity=0.123 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHH
Q 018393 35 ARAVAILKEMEEKCGTPIGKLRQVADAMTVEMHA 68 (356)
Q Consensus 35 ~~~~~~l~~~~~~~~~~~~~L~~i~~~f~~em~~ 68 (356)
+.++++++.+.+.|..+.+.+++=+..|..+|.+
T Consensus 30 ~t~~ei~~~l~~~y~~~~~~~~~dv~~fl~~L~~ 63 (68)
T PF05402_consen 30 RTVEEIVDALAEEYDVDPEEAEEDVEEFLEQLRE 63 (68)
T ss_dssp S-HHHHHHHHHHHTT--HHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHH
Confidence 3488999999999999999999989999998875
No 78
>PF11104 PilM_2: Type IV pilus assembly protein PilM;; PDB: 2YCH_A.
Probab=40.35 E-value=1.1e+02 Score=30.04 Aligned_cols=60 Identities=15% Similarity=0.359 Sum_probs=33.9
Q ss_pred EEEeCCceeEEEEEEEcCCcceeEEEEeEeeccCccccccCchHHHHHHHHHHHHHHhhcCC
Q 018393 99 ALDLGGTNFRVLRVQLGGREGRVVKQEFEEVSIPPHLMTGSSHELFDYIAAALAKFVATEGE 160 (356)
Q Consensus 99 alDlGGTnlRv~~V~L~g~~~~~~~~~~~~~~Ip~~~~~~~~~~LFd~IA~~I~~fl~~~~~ 160 (356)
.||+|-.++|++.++-.+++..+ ...-..++|........-.=.+.+++.|.+.+++++.
T Consensus 1 GiDiG~~siK~v~l~~~~~~~~l--~~~~~~~~p~~~i~~g~i~d~~~l~~~L~~~~~~~~~ 60 (340)
T PF11104_consen 1 GIDIGSSSIKAVELSKKGNRFQL--EAFASIPLPPGAISDGEIVDPEALAEALKELLKENKI 60 (340)
T ss_dssp EEEE-SSEEEEEEEETTTT--EE--EEEEEEE--TTSEETTEES-HHHHHHHHHHHHHHHT-
T ss_pred CeecCCCeEEEEEEEEcCCccEE--EEEEEEECCCCCccCCCcCCHHHHHHHHHHHHHHcCC
Confidence 58999999999888764443222 2334677888764322222245677777777776654
No 79
>PRK13411 molecular chaperone DnaK; Provisional
Probab=40.01 E-value=83 Score=34.22 Aligned_cols=24 Identities=42% Similarity=0.710 Sum_probs=20.7
Q ss_pred ccccEEEEEeCCceeEEEEEEEcC
Q 018393 93 EKGLFYALDLGGTNFRVLRVQLGG 116 (356)
Q Consensus 93 E~G~fLalDlGGTnlRv~~V~L~g 116 (356)
..+.+|++||||.+|-|.++++.+
T Consensus 184 ~~~~vlV~DlGgGT~dvsi~~~~~ 207 (653)
T PRK13411 184 QEQLILVFDLGGGTFDVSILQLGD 207 (653)
T ss_pred CCCEEEEEEcCCCeEEEEEEEEeC
Confidence 345799999999999999999954
No 80
>TIGR03706 exo_poly_only exopolyphosphatase. It appears that a single enzyme may act as both exopolyphosphatase (Ppx) and guanosine pentaphosphate phosphohydrolase (GppA) in a number of species. Members of the seed alignment use to define this exception-level model are encoded adjacent to a polyphosphate kinase 1 gene, and the trusted cutoff is set high enough (425) that no genome has a second hit. Therefore all members may be presumed to at least share exopolyphospatase activity, and may lack GppA activity. GppA acts in the stringent response.
Probab=38.38 E-value=1.2e+02 Score=29.36 Aligned_cols=62 Identities=26% Similarity=0.264 Sum_probs=40.6
Q ss_pred EEEEEeCCceeEEEEEEEcCCcceeEEEEeEeeccCcccc-ccC-chHHHHHHHHHHHHHHhhc
Q 018393 97 FYALDLGGTNFRVLRVQLGGREGRVVKQEFEEVSIPPHLM-TGS-SHELFDYIAAALAKFVATE 158 (356)
Q Consensus 97 fLalDlGGTnlRv~~V~L~g~~~~~~~~~~~~~~Ip~~~~-~~~-~~~LFd~IA~~I~~fl~~~ 158 (356)
|=+||+|-.++|++++++.+....+........++.+.+- ++. .++=.+-+.+++.+|.+..
T Consensus 2 ~AvIDiGSNsirl~I~~~~~~~~~~l~~~~~~vrL~~~~~~~g~i~~e~i~~~~~~l~~f~~~~ 65 (300)
T TIGR03706 2 IAAIDIGSNSVRLVIARGVEGSLQVLFNEKEMVRLGEGLDSTGRLSEEAIERALEALKRFAELL 65 (300)
T ss_pred eEEEEecCCeeeEEEEEecCCcEEEhhheeeeeecCCCCCCCCCcCHHHHHHHHHHHHHHHHHH
Confidence 4589999999999999986433233333344566766652 222 4566677778888886643
No 81
>PF11215 DUF3010: Protein of unknown function (DUF3010); InterPro: IPR021378 This family of proteins with unknown function appears to be restricted to Gammaproteobacteria.
Probab=36.97 E-value=89 Score=27.55 Aligned_cols=60 Identities=13% Similarity=0.141 Sum_probs=43.1
Q ss_pred EEEEEeCCceeEEEEEEEcCCcceeEEEEeEeeccCccccccCchHHHHHHHHHHHHHHhhcCC
Q 018393 97 FYALDLGGTNFRVLRVQLGGREGRVVKQEFEEVSIPPHLMTGSSHELFDYIAAALAKFVATEGE 160 (356)
Q Consensus 97 fLalDlGGTnlRv~~V~L~g~~~~~~~~~~~~~~Ip~~~~~~~~~~LFd~IA~~I~~fl~~~~~ 160 (356)
..+++|=|+..++|++.+.+....++.....++.+++.. +.+++=+|- ..++++++++..
T Consensus 3 vCGVELkgneaii~ll~~~~~~~~~pdcr~~k~~l~~~~---~~~~vr~Fq-~~f~kl~~dy~V 62 (138)
T PF11215_consen 3 VCGVELKGNEAIICLLSLDDGLFQLPDCRVRKFSLSDDN---STEEVRKFQ-FTFAKLMEDYKV 62 (138)
T ss_pred EEEEEEecCeEEEEEEecCCCceECCccceeEEEcCCCc---cHHHHHHHH-HHHHHHHHHcCC
Confidence 468899999999999998665555566666788888754 455665555 347778877764
No 82
>KOG3127 consensus Deoxycytidylate deaminase [Nucleotide transport and metabolism]
Probab=36.59 E-value=20 Score=33.99 Aligned_cols=26 Identities=31% Similarity=0.452 Sum_probs=21.7
Q ss_pred hhhhhcccccCCCceEE--------EEecccccc
Q 018393 232 IGTLAGGRYHNKDAIAA--------VILGTGTNA 257 (356)
Q Consensus 232 VaTLla~~y~~~~~~iG--------lIlGTGtNa 257 (356)
+|.|.|-+-.||++.|| .|+|||-|+
T Consensus 73 iA~LsA~RSkDpntqVGaCiv~~~n~iVg~GYNg 106 (230)
T KOG3127|consen 73 IAFLSAKRSKDPNTQVGACIVDRENRIVGTGYNG 106 (230)
T ss_pred HHHHHHHhccCcccceeeEEEcCCCEEEEeccCC
Confidence 78888888999999998 567777776
No 83
>PF02419 PsbL: PsbL protein; InterPro: IPR003372 Oxygenic photosynthesis uses two multi-subunit photosystems (I and II) located in the cell membranes of cyanobacteria and in the thylakoid membranes of chloroplasts in plants and algae. Photosystem II (PSII) has a P680 reaction centre containing chlorophyll 'a' that uses light energy to carry out the oxidation (splitting) of water molecules, and to produce ATP via a proton pump. Photosystem I (PSI) has a P700 reaction centre containing chlorophyll that takes the electron and associated hydrogen donated from PSII to reduce NADP+ to NADPH. Both ATP and NADPH are subsequently used in the light-independent reactions to convert carbon dioxide to glucose using the hydrogen atom extracted from water by PSII, releasing oxygen as a by-product. PSII is a multisubunit protein-pigment complex containing polypeptides both intrinsic and extrinsic to the photosynthetic membrane [, ]. Within the core of the complex, the chlorophyll and beta-carotene pigments are mainly bound to the antenna proteins CP43 (PsbC) and CP47 (PsbB), which pass the excitation energy on to the reaction centre proteins D1 (Qb, PsbA) and D2 (Qa, PsbD) that bind all the redox-active cofactors involved in the energy conversion process. The PSII oxygen-evolving complex (OEC) oxidises water to provide protons for use by PSI, and consists of OEE1 (PsbO), OEE2 (PsbP) and OEE3 (PsbQ). The remaining subunits in PSII are of low molecular weight (less than 10 kDa), and are involved in PSII assembly, stabilisation, dimerisation, and photo-protection []. This family represents the low molecular weight transmembrane protein PsbL found in PSII. PsbL is located in a gene cluster with PsbE, PsbF and PsbJ (PsbEFJL). Both PsbL and PsbJ (IPR002682 from INTERPRO) are essential for proper assembly of the OEC. Mutations in PsbL prevent the formation of both PSII core dimers and PSII-light harvesting complex []. In addition, both PsbL and PsbJ are involved in the unidirectional flow of electrons, where PsbJ regulates the forward electron flow from D2 (Qa) to the plastoquinone pool, and PsbL prevents the reduction of PSII by back electron flow from plastoquinol protecting PSII from photo-inactivation [].; GO: 0015979 photosynthesis, 0009523 photosystem II, 0009539 photosystem II reaction center, 0016020 membrane; PDB: 3A0H_L 3A0B_l 3ARC_l 1S5L_l 2AXT_l 3BZ2_L 4FBY_L 3PRQ_L 3PRR_L 3KZI_L ....
Probab=36.57 E-value=29 Score=23.72 Aligned_cols=30 Identities=27% Similarity=0.313 Sum_probs=18.4
Q ss_pred CCCCCCceeeehhcccchHHHHHHHHHHHH
Q 018393 306 SLNPGEQIFEKIISGMYLGEIVRRVLCRMA 335 (356)
Q Consensus 306 s~nPG~q~fEKmvSG~YLGEl~R~ill~l~ 335 (356)
++||.+|+-|-=-+..|+|-++=.++--+.
T Consensus 2 ~~Npn~q~VELNRTSLY~GLllifvl~vLF 31 (37)
T PF02419_consen 2 RPNPNKQPVELNRTSLYWGLLLIFVLAVLF 31 (37)
T ss_dssp ---TT---BE--CCHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCccchhHHhHHHHHHHHHHHHHHh
Confidence 579999999999999999999877765544
No 84
>PRK00753 psbL photosystem II reaction center L; Provisional
Probab=36.27 E-value=42 Score=23.09 Aligned_cols=31 Identities=29% Similarity=0.340 Sum_probs=26.1
Q ss_pred CCCCCCceeeehhcccchHHHHHHHHHHHHH
Q 018393 306 SLNPGEQIFEKIISGMYLGEIVRRVLCRMAE 336 (356)
Q Consensus 306 s~nPG~q~fEKmvSG~YLGEl~R~ill~l~~ 336 (356)
.+||.+|+-|-=-...|+|-++=-++--+..
T Consensus 4 ~~NpN~q~VELNRTSLy~GlLlifvl~vLFs 34 (39)
T PRK00753 4 NPNPNKQPVELNRTSLYLGLLLVFVLGILFS 34 (39)
T ss_pred CCCCCCCCceechhhHHHHHHHHHHHHHHHH
Confidence 5799999999999999999998777765544
No 85
>PRK01433 hscA chaperone protein HscA; Provisional
Probab=35.47 E-value=90 Score=33.63 Aligned_cols=19 Identities=21% Similarity=0.261 Sum_probs=16.4
Q ss_pred ccEEEEEeCCceeEEEEEE
Q 018393 95 GLFYALDLGGTNFRVLRVQ 113 (356)
Q Consensus 95 G~fLalDlGGTnlRv~~V~ 113 (356)
...++||||.||-.|+...
T Consensus 19 ~~viGIDlGTT~S~va~~~ 37 (595)
T PRK01433 19 QIAVGIDFGTTNSLIAIAT 37 (595)
T ss_pred ceEEEEEcCcccEEEEEEe
Confidence 4589999999999999874
No 86
>COG5146 PanK Pantothenate kinase, acetyl-CoA regulated [Coenzyme metabolism]
Probab=35.37 E-value=1e+02 Score=30.01 Aligned_cols=173 Identities=17% Similarity=0.215 Sum_probs=88.1
Q ss_pred EEEEEeCCceeEEEEEEEcCCcceeEEEEeEeeccCccccccCchHHHHHHHHHHHHHHhhcCCCCCCCCCccee-eeee
Q 018393 97 FYALDLGGTNFRVLRVQLGGREGRVVKQEFEEVSIPPHLMTGSSHELFDYIAAALAKFVATEGEGFHVSPGRQRE-LGFT 175 (356)
Q Consensus 97 fLalDlGGTnlRv~~V~L~g~~~~~~~~~~~~~~Ip~~~~~~~~~~LFd~IA~~I~~fl~~~~~~~~~~~~~~l~-lGfT 175 (356)
-+|||.|||=-+|..-.... .+ ..|.+-+ +..-+++.+|++.-|.+..+......+ -+. =|=.
T Consensus 20 ~vaiDiGGtLaKvv~sp~~s-----nr---l~F~t~e---T~kId~~ve~l~~li~~h~k~C~~~~~-----liatGGga 83 (342)
T COG5146 20 KVAIDIGGTLAKVVQSPSQS-----NR---LTFKTEE---TKKIDQVVEWLNNLIQQHEKLCLTKIT-----LIATGGGA 83 (342)
T ss_pred EEEEecCceeeeeeeCcccc-----cc---eeeehHh---hhhHHHHHHHHHHHHHHHHhhhhheee-----EEecCCcc
Confidence 58999999988876521111 11 1232222 234578889998877765443221100 000 0001
Q ss_pred eeeeeeeccCCceEEEeeccceecCCCCCCcHHHHHHHHHHHc--CCCceEEEEEecchhh----hhcccccCCCceEEE
Q 018393 176 FSFPVRQTSIASGDLIKWTKGFSIEDTVGEDVVGELTKAMERI--GLDMRVAALVNDTIGT----LAGGRYHNKDAIAAV 249 (356)
Q Consensus 176 FSFP~~q~~i~~g~Li~wtKgF~~~~v~G~dv~~lL~~al~r~--~l~v~v~aivNDTVaT----Lla~~y~~~~~~iGl 249 (356)
|-| --++.|.|+++ +...+-.+.|..-|.-. .+|-+ +-+.||..+- ++...|.+-...|=+
T Consensus 84 ~kf-----------yd~m~~~~~ik-v~r~~eme~li~gl~~fv~~IP~e-vFv~~d~~~e~~~~~~~~~~h~lypyilv 150 (342)
T COG5146 84 YKF-----------YDRMSKQLDIK-VIRENEMEILINGLNYFVINIPAE-VFVEFDAASEGLGILLKEQGHDLYPYILV 150 (342)
T ss_pred hhh-----------HHHHhhhccce-eeecchHHHHHhcccceeeeccHH-HeeeeccccchhhhhhhhccccccceeeE
Confidence 111 12345556555 44444444443333221 12222 3567776543 445556655677888
Q ss_pred EecccccceeecccCCCCCcCCCCCCCCcEEEEecCCCcCCCCCCCChhhHhhhc
Q 018393 250 ILGTGTNAAYVERAHAIPKWHGLLPKSGEMVINMEWGNFRSSHLPLTEYDEALDT 304 (356)
Q Consensus 250 IlGTGtNacY~e~~~~I~k~~~~~~~~~~miINtEwG~Fg~~~lp~T~~D~~vD~ 304 (356)
=+|+|+-.-|+---++.....+.... + -|=||..- =--+.|.||..+|.
T Consensus 151 NiGsGvSilkvtgpsqf~RvGGsslG-G----GtlwGLls-Llt~a~~ydqmld~ 199 (342)
T COG5146 151 NIGSGVSILKVTGPSQFERVGGSSLG-G----GTLWGLLS-LLTQATDYDQMLDM 199 (342)
T ss_pred eccCCeEEEEecCcchhccccccccC-c----chHHHHHH-HHcccccHHHHHHH
Confidence 89999988887655544443332111 1 13466541 01367899998884
No 87
>TIGR00987 himA integration host factor, alpha subunit. This protein forms a site-specific DNA-binding heterodimer with the integration host factor beta subunit. It is closely related to the DNA-binding protein HU.
Probab=34.61 E-value=93 Score=24.99 Aligned_cols=36 Identities=8% Similarity=0.177 Sum_probs=31.5
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhcCC
Q 018393 38 VAILKEMEEKCGTPIGKLRQVADAMTVEMHAGLASE 73 (356)
Q Consensus 38 ~~~l~~~~~~~~~~~~~L~~i~~~f~~em~~gL~~~ 73 (356)
.++++.+.+...++..+...+.+.|.++|.+.|...
T Consensus 5 ~eli~~ia~~~~~s~~~v~~vv~~~~~~i~~~L~~g 40 (96)
T TIGR00987 5 AEMSEYLFDELGLSKREAKELVELFFEEIRRALENG 40 (96)
T ss_pred HHHHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHcC
Confidence 467777788888999999999999999999999763
No 88
>PF06295 DUF1043: Protein of unknown function (DUF1043); InterPro: IPR009386 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=34.16 E-value=1.3e+02 Score=25.75 Aligned_cols=21 Identities=10% Similarity=0.014 Sum_probs=13.8
Q ss_pred ehhhHHHHHHHHHHHhhhhcc
Q 018393 10 VVCAAAVCAAAALVVRRRMKS 30 (356)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~ 30 (356)
.+++.+++++|+++.|.-.++
T Consensus 3 ~i~lvvG~iiG~~~~r~~~~~ 23 (128)
T PF06295_consen 3 IIGLVVGLIIGFLIGRLTSSN 23 (128)
T ss_pred HHHHHHHHHHHHHHHHHhccc
Confidence 356677777887776665544
No 89
>PRK10753 transcriptional regulator HU subunit alpha; Provisional
Probab=34.14 E-value=98 Score=24.74 Aligned_cols=36 Identities=6% Similarity=0.162 Sum_probs=31.0
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhcCC
Q 018393 38 VAILKEMEEKCGTPIGKLRQVADAMTVEMHAGLASE 73 (356)
Q Consensus 38 ~~~l~~~~~~~~~~~~~L~~i~~~f~~em~~gL~~~ 73 (356)
.++++.+.+...++..+...+.+.|.+.|.+.|...
T Consensus 4 ~eli~~ia~~~~~s~~~~~~~v~~~~~~i~~~L~~g 39 (90)
T PRK10753 4 TQLIDVIADKAELSKTQAKAALESTLAAITESLKEG 39 (90)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHcC
Confidence 356777777788999999999999999999999764
No 90
>TIGR02350 prok_dnaK chaperone protein DnaK. Members of this family are the chaperone DnaK, of the DnaK-DnaJ-GrpE chaperone system. All members of the seed alignment were taken from completely sequenced bacterial or archaeal genomes and (except for Mycoplasma sequence) found clustered with other genes of this systems. This model excludes DnaK homologs that are not DnaK itself, such as the heat shock cognate protein HscA (TIGR01991). However, it is not designed to distinguish among DnaK paralogs in eukaryotes. Note that a number of dnaK genes have shadow ORFs in the same reverse (relative to dnaK) reading frame, a few of which have been assigned glutamate dehydrogenase activity. The significance of this observation is unclear; lengths of such shadow ORFs are highly variable as if the presumptive protein product is not conserved.
Probab=33.56 E-value=1.2e+02 Score=32.23 Aligned_cols=23 Identities=30% Similarity=0.589 Sum_probs=20.2
Q ss_pred cccEEEEEeCCceeEEEEEEEcC
Q 018393 94 KGLFYALDLGGTNFRVLRVQLGG 116 (356)
Q Consensus 94 ~G~fLalDlGGTnlRv~~V~L~g 116 (356)
...+|.+|+||.++-|.++++.+
T Consensus 182 ~~~vlV~D~Gggt~dvsv~~~~~ 204 (595)
T TIGR02350 182 DEKILVFDLGGGTFDVSILEIGD 204 (595)
T ss_pred CcEEEEEECCCCeEEEEEEEecC
Confidence 45699999999999999999954
No 91
>PF00012 HSP70: Hsp70 protein; InterPro: IPR013126 Heat shock proteins, Hsp70 chaperones help to fold many proteins. Hsp70 assisted folding involves repeated cycles of substrate binding and release. Hsp70 activity is ATP dependent. Hsp70 proteins are made up of two regions: the amino terminus is the ATPase domain and the carboxyl terminus is the substrate binding region []. Hsp70 proteins have an average molecular weight of 70 kDa [, , ]. In most species,there are many proteins that belong to the hsp70 family. Some of these are only expressed under stress conditions (strictly inducible), while some are present in cells under normal growth conditions and are not heat-inducible (constitutive or cognate) [, ]. Hsp70 proteins can be found in different cellular compartments(nuclear, cytosolic, mitochondrial, endoplasmic reticulum, for example).; PDB: 2P32_D 3D2F_A 2QXL_A 3D2E_C 3C7N_A 3FE1_C 4ANI_C 2V7Y_A 2KHO_A 3DPQ_B ....
Probab=33.49 E-value=91 Score=32.79 Aligned_cols=24 Identities=25% Similarity=0.458 Sum_probs=21.1
Q ss_pred ccccEEEEEeCCceeEEEEEEEcC
Q 018393 93 EKGLFYALDLGGTNFRVLRVQLGG 116 (356)
Q Consensus 93 E~G~fLalDlGGTnlRv~~V~L~g 116 (356)
..+.+|++|+||+++-+.+++...
T Consensus 186 ~~~~vlv~D~Gggt~dvs~~~~~~ 209 (602)
T PF00012_consen 186 KGKTVLVVDFGGGTFDVSVVEFSN 209 (602)
T ss_dssp SEEEEEEEEEESSEEEEEEEEEET
T ss_pred cccceeccccccceEeeeehhccc
Confidence 456899999999999999999853
No 92
>PRK00285 ihfA integration host factor subunit alpha; Reviewed
Probab=33.46 E-value=99 Score=24.90 Aligned_cols=37 Identities=14% Similarity=0.243 Sum_probs=32.5
Q ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhcCC
Q 018393 37 AVAILKEMEEKCGTPIGKLRQVADAMTVEMHAGLASE 73 (356)
Q Consensus 37 ~~~~l~~~~~~~~~~~~~L~~i~~~f~~em~~gL~~~ 73 (356)
..++++.+.+...++..+...+.+.|.++|.+.|...
T Consensus 5 k~el~~~ia~~~~~s~~~v~~vl~~~~~~i~~~L~~g 41 (99)
T PRK00285 5 KADLAEALFEKVGLSKREAKELVELFFEEIRDALENG 41 (99)
T ss_pred HHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHcC
Confidence 3567888888888999999999999999999999763
No 93
>PRK13717 conjugal transfer protein TrbI; Provisional
Probab=33.42 E-value=44 Score=29.02 Aligned_cols=36 Identities=8% Similarity=0.133 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhcC
Q 018393 36 RAVAILKEMEEKCGTPIGKLRQVADAMTVEMHAGLAS 72 (356)
Q Consensus 36 ~~~~~l~~~~~~~~~~~~~L~~i~~~f~~em~~gL~~ 72 (356)
.+++..++.. +-.++.++.++...+|...|++-|..
T Consensus 55 Tld~F~~Q~~-~~~lte~q~e~lt~rF~~aL~~~L~~ 90 (128)
T PRK13717 55 TVDAFFDSAS-QKQLSEAQSKALSARFNTALEASLQA 90 (128)
T ss_pred HHHHHHHHHh-ccCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555554 34578999999999999999999963
No 94
>PTZ00186 heat shock 70 kDa precursor protein; Provisional
Probab=33.06 E-value=1.2e+02 Score=33.09 Aligned_cols=23 Identities=30% Similarity=0.641 Sum_probs=20.1
Q ss_pred cccEEEEEeCCceeEEEEEEEcC
Q 018393 94 KGLFYALDLGGTNFRVLRVQLGG 116 (356)
Q Consensus 94 ~G~fLalDlGGTnlRv~~V~L~g 116 (356)
.+.+|++||||.+|=|.++++.+
T Consensus 211 ~~~vlV~DlGGGT~DvSil~~~~ 233 (657)
T PTZ00186 211 DSLIAVYDLGGGTFDISVLEIAG 233 (657)
T ss_pred CCEEEEEECCCCeEEEEEEEEeC
Confidence 35799999999999999999954
No 95
>COG3734 DgoK 2-keto-3-deoxy-galactonokinase [Carbohydrate transport and metabolism]
Probab=32.85 E-value=37 Score=33.53 Aligned_cols=22 Identities=32% Similarity=0.430 Sum_probs=18.5
Q ss_pred cccEEEEEeCCceeEEEEEEEc
Q 018393 94 KGLFYALDLGGTNFRVLRVQLG 115 (356)
Q Consensus 94 ~G~fLalDlGGTnlRv~~V~L~ 115 (356)
...|+++|-|.||||+-+++=+
T Consensus 4 ~~~~i~iDWGTT~~R~wL~~~d 25 (306)
T COG3734 4 EPAYIAIDWGTTNLRAWLVRGD 25 (306)
T ss_pred CceEEEEecCCccEEEEEEcCC
Confidence 4579999999999999888543
No 96
>PRK01433 hscA chaperone protein HscA; Provisional
Probab=32.83 E-value=91 Score=33.59 Aligned_cols=24 Identities=33% Similarity=0.634 Sum_probs=21.0
Q ss_pred ccccEEEEEeCCceeEEEEEEEcC
Q 018393 93 EKGLFYALDLGGTNFRVLRVQLGG 116 (356)
Q Consensus 93 E~G~fLalDlGGTnlRv~~V~L~g 116 (356)
+.+.+|++||||.+|-|.++++.+
T Consensus 191 ~~~~vlV~DlGGGT~DvSi~~~~~ 214 (595)
T PRK01433 191 QKGCYLVYDLGGGTFDVSILNIQE 214 (595)
T ss_pred CCCEEEEEECCCCcEEEEEEEEeC
Confidence 456899999999999999999854
No 97
>CHL00038 psbL photosystem II protein L
Probab=32.72 E-value=48 Score=22.72 Aligned_cols=32 Identities=25% Similarity=0.309 Sum_probs=26.5
Q ss_pred CCCCCCceeeehhcccchHHHHHHHHHHHHHc
Q 018393 306 SLNPGEQIFEKIISGMYLGEIVRRVLCRMAEE 337 (356)
Q Consensus 306 s~nPG~q~fEKmvSG~YLGEl~R~ill~l~~~ 337 (356)
.+||.+|+-|-=-...|+|-++=-++.-+...
T Consensus 3 ~~NPN~q~VELNRTSLy~GLLlifvl~vlfss 34 (38)
T CHL00038 3 QSNPNKQNVELNRTSLYWGLLLIFVLAVLFSN 34 (38)
T ss_pred CCCCCCCccchhhhhHHHHHHHHHHHHHHHHH
Confidence 56999999999999999999987777655543
No 98
>smart00411 BHL bacterial (prokaryotic) histone like domain.
Probab=32.71 E-value=1.1e+02 Score=23.81 Aligned_cols=36 Identities=17% Similarity=0.259 Sum_probs=32.0
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhcCC
Q 018393 38 VAILKEMEEKCGTPIGKLRQVADAMTVEMHAGLASE 73 (356)
Q Consensus 38 ~~~l~~~~~~~~~~~~~L~~i~~~f~~em~~gL~~~ 73 (356)
+++++++.+...++..+...+.+.|.++|.+.|...
T Consensus 4 ~eli~~ia~~~~~~~~~v~~vl~~l~~~i~~~L~~g 39 (90)
T smart00411 4 SELIDAIAEKAGLSKKDAKAAVDAFLEIITEALKKG 39 (90)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhCC
Confidence 467788888888999999999999999999999763
No 99
>PTZ00281 actin; Provisional
Probab=32.50 E-value=1.8e+02 Score=29.09 Aligned_cols=39 Identities=5% Similarity=0.123 Sum_probs=29.8
Q ss_pred CCceEEEEEecchhhhhcccccCCCceEEEEecccccceeeccc
Q 018393 220 LDMRVAALVNDTIGTLAGGRYHNKDAIAAVILGTGTNAAYVERA 263 (356)
Q Consensus 220 l~v~v~aivNDTVaTLla~~y~~~~~~iGlIlGTGtNacY~e~~ 263 (356)
+++.-+.+.++++..+.+..- .-|+|+--|...+++-|+
T Consensus 128 ~~vp~~~~~~~~~ls~ya~g~-----~tglVVDiG~~~t~v~PV 166 (376)
T PTZ00281 128 FNTPAMYVAIQAVLSLYASGR-----TTGIVMDSGDGVSHTVPI 166 (376)
T ss_pred cCCceeEeeccHHHHHHhcCC-----ceEEEEECCCceEEEEEE
Confidence 456667888998888876432 359999999999998775
No 100
>PRK11677 hypothetical protein; Provisional
Probab=32.04 E-value=1.3e+02 Score=26.32 Aligned_cols=19 Identities=11% Similarity=0.062 Sum_probs=12.2
Q ss_pred eehhhHHHHHHHHHHHhhh
Q 018393 9 TVVCAAAVCAAAALVVRRR 27 (356)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~ 27 (356)
+++.+.+++++|+++.|.-
T Consensus 6 a~i~livG~iiG~~~~R~~ 24 (134)
T PRK11677 6 ALIGLVVGIIIGAVAMRFG 24 (134)
T ss_pred HHHHHHHHHHHHHHHHhhc
Confidence 3456666777787776653
No 101
>PRK10854 exopolyphosphatase; Provisional
Probab=31.76 E-value=1.9e+02 Score=30.46 Aligned_cols=62 Identities=19% Similarity=0.267 Sum_probs=42.9
Q ss_pred cEEEEEeCCceeEEEEEEEcCCcceeEEEEeEeeccCccccc-cC-chHHHHHHHHHHHHHHhh
Q 018393 96 LFYALDLGGTNFRVLRVQLGGREGRVVKQEFEEVSIPPHLMT-GS-SHELFDYIAAALAKFVAT 157 (356)
Q Consensus 96 ~fLalDlGGTnlRv~~V~L~g~~~~~~~~~~~~~~Ip~~~~~-~~-~~~LFd~IA~~I~~fl~~ 157 (356)
.|=+||+|-.++|..+++..+..-.+.....+...+.+.+-. +. .++=.+-..+++..|...
T Consensus 12 ~~A~IDIGSNSirL~I~e~~~~~~~~i~~~k~~vrLg~g~~~~g~Ls~e~~~r~~~~L~~F~~~ 75 (513)
T PRK10854 12 EFAAVDLGSNSFHMVIARVVDGAMQIIGRLKQRVHLADGLDSDNMLSEEAMERGLNCLSLFAER 75 (513)
T ss_pred EEEEEEeccchheEEEEEecCCcEEEeeeeeEEEECCCCcCCCCCcCHHHHHHHHHHHHHHHHH
Confidence 477999999999999999865333444444456667665532 22 457788888888888553
No 102
>PF00216 Bac_DNA_binding: Bacterial DNA-binding protein; InterPro: IPR000119 Bacteria synthesise a set of small, usually basic proteins of about 90 residues that bind DNA and are known as histone-like proteins [, ]. Examples include the HU protein in Escherichia coli is a dimer of closely related alpha and beta chains and in other bacteria can be a dimer of identical chains. HU-type proteins have been found in a variety of eubacteria, cyanobacteria and archaebacteria, and are also encoded in the chloroplast genome of some algae []. The integration host factor (IHF), a dimer of closely related chains which seem to function in genetic recombination as well as in translational and transcriptional control [] is found in enterobacteria and viral proteins include the African Swine fever virus protein A104R (or LMW5-AR) []. The exact function of these proteins is not yet clear but they are capable of wrapping DNA and stabilising it from denaturation under extreme environmental conditions. The structure is known for one of these proteins []. The protein exists as a dimer and two "beta-arms" function as the non-specific binding site for bacterial DNA. ; GO: 0003677 DNA binding; PDB: 3C4I_B 2O97_A 1MUL_A 1P78_A 1P51_C 1P71_B 2HT0_A 1OWG_A 2IIF_A 1OUZ_A ....
Probab=31.63 E-value=1.1e+02 Score=23.77 Aligned_cols=36 Identities=22% Similarity=0.307 Sum_probs=31.4
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhcCC
Q 018393 38 VAILKEMEEKCGTPIGKLRQVADAMTVEMHAGLASE 73 (356)
Q Consensus 38 ~~~l~~~~~~~~~~~~~L~~i~~~f~~em~~gL~~~ 73 (356)
.++++.+.+...++..+...+.+.|.++|.+.|...
T Consensus 4 ~eli~~ia~~~~~s~~~v~~vl~~~~~~i~~~L~~g 39 (90)
T PF00216_consen 4 KELIKRIAEKTGLSKKDVEAVLDALFDVIKEALKEG 39 (90)
T ss_dssp HHHHHHHHHHHTSSHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhcC
Confidence 467777788888999999999999999999999763
No 103
>PF14574 DUF4445: Domain of unknown function (DUF4445); PDB: 3ZYY_X.
Probab=30.79 E-value=89 Score=32.31 Aligned_cols=18 Identities=33% Similarity=0.469 Sum_probs=16.0
Q ss_pred EEEEeCCceeEEEEEEEc
Q 018393 98 YALDLGGTNFRVLRVQLG 115 (356)
Q Consensus 98 LalDlGGTnlRv~~V~L~ 115 (356)
+|+|+|-|+++..+++|.
T Consensus 4 iAvDiGTTti~~~L~dl~ 21 (412)
T PF14574_consen 4 IAVDIGTTTIAAYLVDLE 21 (412)
T ss_dssp EEEEE-SSEEEEEEEETT
T ss_pred EEEEcchhheeeEEEECC
Confidence 799999999999999995
No 104
>PTZ00009 heat shock 70 kDa protein; Provisional
Probab=30.70 E-value=1.3e+02 Score=32.60 Aligned_cols=23 Identities=26% Similarity=0.427 Sum_probs=20.3
Q ss_pred cccEEEEEeCCceeEEEEEEEcC
Q 018393 94 KGLFYALDLGGTNFRVLRVQLGG 116 (356)
Q Consensus 94 ~G~fLalDlGGTnlRv~~V~L~g 116 (356)
...+|.+||||.++-|.++++.+
T Consensus 193 ~~~vlv~D~GggT~dvsv~~~~~ 215 (653)
T PTZ00009 193 EKNVLIFDLGGGTFDVSLLTIED 215 (653)
T ss_pred CCEEEEEECCCCeEEEEEEEEeC
Confidence 45699999999999999999954
No 105
>PRK13410 molecular chaperone DnaK; Provisional
Probab=29.94 E-value=1.5e+02 Score=32.43 Aligned_cols=23 Identities=30% Similarity=0.572 Sum_probs=20.1
Q ss_pred cccEEEEEeCCceeEEEEEEEcC
Q 018393 94 KGLFYALDLGGTNFRVLRVQLGG 116 (356)
Q Consensus 94 ~G~fLalDlGGTnlRv~~V~L~g 116 (356)
.+.+|.+||||.+|-|.++++.+
T Consensus 186 ~~~vlV~DlGgGT~Dvsv~~~~~ 208 (668)
T PRK13410 186 SQTVLVFDLGGGTFDVSLLEVGN 208 (668)
T ss_pred CCEEEEEECCCCeEEEEEEEEcC
Confidence 35699999999999999999954
No 106
>TIGR03123 one_C_unchar_1 probable H4MPT-linked C1 transfer pathway protein. This protein family was identified, by the method of partial phylogenetic profiling, as related to the use of tetrahydromethanopterin (H4MPT) as a C-1 carrier. Characteristic markers of the H4MPT-linked C1 transfer pathway include formylmethanofuran dehydrogenase subunits, methenyltetrahydromethanopterin cyclohydrolase, etc. Tetrahydromethanopterin, a tetrahydrofolate analog, occurs in methanogenic archaea, bacterial methanotrophs, planctomycetes, and a few other lineages.
Probab=29.52 E-value=39 Score=33.65 Aligned_cols=20 Identities=15% Similarity=0.225 Sum_probs=17.9
Q ss_pred cccEEEEEeCCceeEEEEEE
Q 018393 94 KGLFYALDLGGTNFRVLRVQ 113 (356)
Q Consensus 94 ~G~fLalDlGGTnlRv~~V~ 113 (356)
.+..|.+|+|||+..|+.|+
T Consensus 127 ~~~~I~~DmGGTTtDi~~i~ 146 (318)
T TIGR03123 127 IPECLFVDMGSTTTDIIPII 146 (318)
T ss_pred CCCEEEEEcCccceeeEEec
Confidence 56799999999999999884
No 107
>PRK00290 dnaK molecular chaperone DnaK; Provisional
Probab=29.40 E-value=1.4e+02 Score=32.12 Aligned_cols=23 Identities=30% Similarity=0.560 Sum_probs=20.1
Q ss_pred cccEEEEEeCCceeEEEEEEEcC
Q 018393 94 KGLFYALDLGGTNFRVLRVQLGG 116 (356)
Q Consensus 94 ~G~fLalDlGGTnlRv~~V~L~g 116 (356)
...+|.+|+||.++-|.++++.+
T Consensus 184 ~~~vlV~D~GggT~dvsv~~~~~ 206 (627)
T PRK00290 184 DEKILVYDLGGGTFDVSILEIGD 206 (627)
T ss_pred CCEEEEEECCCCeEEEEEEEEeC
Confidence 35699999999999999999954
No 108
>COG3105 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=29.19 E-value=95 Score=27.21 Aligned_cols=61 Identities=11% Similarity=0.090 Sum_probs=31.5
Q ss_pred hhhHHHHHHHHHHHhhhhcccchHHHHHH-----------HHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhcC
Q 018393 11 VCAAAVCAAAALVVRRRMKSTGRWARAVA-----------ILKEMEEKCGTPIGKLRQVADAMTVEMHAGLAS 72 (356)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~l~~~~~~~~~~~~~L~~i~~~f~~em~~gL~~ 72 (356)
..+++++++|++..|=-.++-+...+++. .=++++..|.-+.|-|..++...++ +.+-+++
T Consensus 13 igLvvGi~IG~li~Rlt~~~~k~q~~~q~ELe~~K~~ld~~rqel~~HFa~sAeLlktl~~dYqk-lyqHmA~ 84 (138)
T COG3105 13 IGLVVGIIIGALIARLTNRKLKQQQKLQYELEKVKAQLDEYRQELVKHFARSAELLKTLAQDYQK-LYQHMAK 84 (138)
T ss_pred HHHHHHHHHHHHHHHHcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHh
Confidence 34556666777766654444333333333 3334555555566666666655544 4444544
No 109
>smart00268 ACTIN Actin. ACTIN subfamily of ACTIN/mreB/sugarkinase/Hsp70 superfamily
Probab=28.26 E-value=2.8e+02 Score=27.29 Aligned_cols=39 Identities=8% Similarity=0.177 Sum_probs=29.4
Q ss_pred CCceEEEEEecchhhhhcccccCCCceEEEEecccccceeeccc
Q 018393 220 LDMRVAALVNDTIGTLAGGRYHNKDAIAAVILGTGTNAAYVERA 263 (356)
Q Consensus 220 l~v~v~aivNDTVaTLla~~y~~~~~~iGlIlGTGtNacY~e~~ 263 (356)
+++.-+.++++.++++.+.. ..-|+|+--|...+.+-++
T Consensus 122 ~~~~~v~~~~~~~~a~~~~g-----~~~~lVVDiG~~~t~v~pv 160 (373)
T smart00268 122 FNFPALYIAIQAVLSLYASG-----RTTGLVIDSGDGVTHVVPV 160 (373)
T ss_pred CCCCeEEEeccHHHHHHhCC-----CCEEEEEecCCCcceEEEE
Confidence 46667888999999988764 2348888888877777664
No 110
>PRK00109 Holliday junction resolvase-like protein; Reviewed
Probab=28.24 E-value=2.3e+02 Score=24.49 Aligned_cols=20 Identities=25% Similarity=0.376 Sum_probs=15.5
Q ss_pred cccEEEEEeCCceeEEEEEE
Q 018393 94 KGLFYALDLGGTNFRVLRVQ 113 (356)
Q Consensus 94 ~G~fLalDlGGTnlRv~~V~ 113 (356)
.+.+||||+|-...=+++.+
T Consensus 3 ~~~iLalD~G~kriGvAv~d 22 (138)
T PRK00109 3 SGRILGLDVGTKRIGVAVSD 22 (138)
T ss_pred CCcEEEEEeCCCEEEEEEec
Confidence 45799999998777777654
No 111
>TIGR02529 EutJ ethanolamine utilization protein EutJ family protein.
Probab=27.87 E-value=5.1e+02 Score=24.23 Aligned_cols=27 Identities=15% Similarity=0.298 Sum_probs=20.2
Q ss_pred HHHHHHHHHcCCCceEEEEEecchhhhhc
Q 018393 209 GELTKAMERIGLDMRVAALVNDTIGTLAG 237 (356)
Q Consensus 209 ~lL~~al~r~~l~v~v~aivNDTVaTLla 237 (356)
+.+.++++.-|+ +++.++|+.+|..++
T Consensus 78 ~a~~~a~~~aGl--~~~~li~ep~Aaa~~ 104 (239)
T TIGR02529 78 KVIVNVIESAGI--EVLHVLDEPTAAAAV 104 (239)
T ss_pred HHHHHHHHHcCC--ceEEEeehHHHHHHH
Confidence 455677777765 557899999998875
No 112
>CHL00094 dnaK heat shock protein 70
Probab=27.57 E-value=1.8e+02 Score=31.44 Aligned_cols=22 Identities=32% Similarity=0.605 Sum_probs=19.5
Q ss_pred ccEEEEEeCCceeEEEEEEEcC
Q 018393 95 GLFYALDLGGTNFRVLRVQLGG 116 (356)
Q Consensus 95 G~fLalDlGGTnlRv~~V~L~g 116 (356)
..+|++||||.++-|.++++.+
T Consensus 187 ~~vlV~DlGgGT~DvSv~~~~~ 208 (621)
T CHL00094 187 ETILVFDLGGGTFDVSILEVGD 208 (621)
T ss_pred CEEEEEEcCCCeEEEEEEEEcC
Confidence 4699999999999999999853
No 113
>PRK10664 transcriptional regulator HU subunit beta; Provisional
Probab=26.93 E-value=1.6e+02 Score=23.61 Aligned_cols=36 Identities=8% Similarity=0.180 Sum_probs=30.9
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhcCCC
Q 018393 39 AILKEMEEKCGTPIGKLRQVADAMTVEMHAGLASEG 74 (356)
Q Consensus 39 ~~l~~~~~~~~~~~~~L~~i~~~f~~em~~gL~~~~ 74 (356)
++++.+.+...++..+...+.+.|.+.|.+.|..++
T Consensus 5 eli~~ia~~~~~s~~~~~~~v~~~~~~i~~~L~~~~ 40 (90)
T PRK10664 5 QLIDKIAAGADISKAAAGRALDAIIASVTESLKEGD 40 (90)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhCCC
Confidence 566777777789999999999999999999998753
No 114
>cd00591 HU_IHF Integration host factor (IHF) and HU are small heterodimeric members of the DNABII protein family that bind and bend DNA, functioning as architectural factors in many cellular processes including transcription, site-specific recombination, and higher-order nucleoprotein complex assembly. The dimer subunits associate to form a compact globular core from which two beta ribbon arms (one from each subunit) protrude. The beta arms track and bind the DNA minor groove. Despite sequence and structural similarity, IHF and HU can be distinguished by their different DNA substrate preferences.
Probab=26.55 E-value=1.5e+02 Score=22.82 Aligned_cols=35 Identities=20% Similarity=0.274 Sum_probs=30.6
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhcC
Q 018393 38 VAILKEMEEKCGTPIGKLRQVADAMTVEMHAGLAS 72 (356)
Q Consensus 38 ~~~l~~~~~~~~~~~~~L~~i~~~f~~em~~gL~~ 72 (356)
.++++.+.+...++..+...+.+.|.++|.+.|..
T Consensus 3 ~~l~~~ia~~~~~~~~~v~~vl~~~~~~i~~~L~~ 37 (87)
T cd00591 3 SELIEAIAEKTGLSKKDAEAAVDAFLDVITEALAK 37 (87)
T ss_pred HHHHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHhC
Confidence 35677777788899999999999999999999975
No 115
>COG1546 CinA Uncharacterized protein (competence- and mitomycin-induced) [General function prediction only]
Probab=26.14 E-value=3e+02 Score=24.91 Aligned_cols=68 Identities=26% Similarity=0.553 Sum_probs=47.4
Q ss_pred cCCCHHHHHH---HHHHHHHHHHHhhcCCCCCcceeeecccccCCCCC----ccc-cEEEEEeCCceeEEEEEEEcCC
Q 018393 48 CGTPIGKLRQ---VADAMTVEMHAGLASEGGSKLKMLISYVDNLPTGD----EKG-LFYALDLGGTNFRVLRVQLGGR 117 (356)
Q Consensus 48 ~~~~~~~L~~---i~~~f~~em~~gL~~~~~s~l~MlPS~v~~lP~G~----E~G-~fLalDlGGTnlRv~~V~L~g~ 117 (356)
+.++.+.|.+ |++.-.+||-+|...+.++++.-=-|-+.. |+|. +.| .|+++..|| ..-+-.++++|+
T Consensus 65 LgV~~~tL~~~GaVSe~~a~eMA~Ga~~~~~ad~aiaiTGiAG-P~Gg~~~kpvGtV~ig~~~~~-~~~~~~~~~~g~ 140 (162)
T COG1546 65 LGVSPETLEEHGAVSEEVAREMARGAKERAGADIAIAITGIAG-PDGGSEGKPVGTVYIGLAIGG-EAITIRVNFGGD 140 (162)
T ss_pred hCCCHHHHHHcCCcCHHHHHHHHHHHHHhcCCCEEEEEEEeeC-CCCCCCCCCceEEEEEEEcCC-ceEEEEEEcCCC
Confidence 4577777754 688889999999876656778777888865 8843 466 488898844 334445566554
No 116
>PF13941 MutL: MutL protein
Probab=26.08 E-value=81 Score=33.08 Aligned_cols=29 Identities=28% Similarity=0.323 Sum_probs=22.2
Q ss_pred cEEEEEeCCceeEEEEEEEcCCcceeEEE
Q 018393 96 LFYALDLGGTNFRVLRVQLGGREGRVVKQ 124 (356)
Q Consensus 96 ~fLalDlGGTnlRv~~V~L~g~~~~~~~~ 124 (356)
.||++|+|.|.-|+.+|++......+.-+
T Consensus 1 ~~L~~DiGST~Tk~~l~d~~~~~~~~ig~ 29 (457)
T PF13941_consen 1 DVLVVDIGSTYTKVTLFDLVDGEPRLIGQ 29 (457)
T ss_pred CEEEEEeCCcceEEeEEeccCCccEEEEE
Confidence 48999999999999999965544444433
No 117
>PLN03184 chloroplast Hsp70; Provisional
Probab=25.88 E-value=1.7e+02 Score=31.95 Aligned_cols=23 Identities=30% Similarity=0.596 Sum_probs=20.0
Q ss_pred cccEEEEEeCCceeEEEEEEEcC
Q 018393 94 KGLFYALDLGGTNFRVLRVQLGG 116 (356)
Q Consensus 94 ~G~fLalDlGGTnlRv~~V~L~g 116 (356)
...+|++|+||.+|-|.++++.+
T Consensus 223 ~~~vlV~DlGgGT~DvSi~~~~~ 245 (673)
T PLN03184 223 NETILVFDLGGGTFDVSVLEVGD 245 (673)
T ss_pred CCEEEEEECCCCeEEEEEEEecC
Confidence 34699999999999999999953
No 118
>PRK11031 guanosine pentaphosphate phosphohydrolase; Provisional
Probab=25.33 E-value=2.8e+02 Score=29.17 Aligned_cols=62 Identities=23% Similarity=0.275 Sum_probs=42.0
Q ss_pred cEEEEEeCCceeEEEEEEEcCCcceeEEEEeEeeccCcccc-ccC-chHHHHHHHHHHHHHHhh
Q 018393 96 LFYALDLGGTNFRVLRVQLGGREGRVVKQEFEEVSIPPHLM-TGS-SHELFDYIAAALAKFVAT 157 (356)
Q Consensus 96 ~fLalDlGGTnlRv~~V~L~g~~~~~~~~~~~~~~Ip~~~~-~~~-~~~LFd~IA~~I~~fl~~ 157 (356)
.|=+||+|-.++|..+++..+..-.+.....+...+.+.+. +|. .++=.+-..+++..|.+.
T Consensus 7 ~~A~IDIGSNSirL~I~~~~~~~~~~l~~~k~~vrLg~g~~~~g~Ls~e~i~r~~~~L~~F~~~ 70 (496)
T PRK11031 7 LYAAIDLGSNSFHMLVVREVAGSIQTLARIKRKVRLAAGLDSDNALSNEAMERGWQCLRLFAER 70 (496)
T ss_pred EEEEEEccccceeEEEEEecCCceEEeecceeEEEccCCcCcCCCcCHHHHHHHHHHHHHHHHH
Confidence 46699999999999999986533233333445666766542 222 457777888888888654
No 119
>PF01968 Hydantoinase_A: Hydantoinase/oxoprolinase; InterPro: IPR002821 This family includes the enzymes hydantoinase and oxoprolinase (3.5.2.9 from EC). Both reactions involve the hydrolysis of 5-membered rings via hydrolysis of their internal imide bonds [].; GO: 0016787 hydrolase activity; PDB: 3C0B_C 3CET_B.
Probab=24.02 E-value=74 Score=30.91 Aligned_cols=18 Identities=22% Similarity=0.397 Sum_probs=14.5
Q ss_pred cEEEEEeCCceeEEEEEE
Q 018393 96 LFYALDLGGTNFRVLRVQ 113 (356)
Q Consensus 96 ~fLalDlGGTnlRv~~V~ 113 (356)
..|.+|+|||+.-++++.
T Consensus 78 ~~i~vDmGGTTtDi~~i~ 95 (290)
T PF01968_consen 78 NAIVVDMGGTTTDIALIK 95 (290)
T ss_dssp SEEEEEE-SS-EEEEEEE
T ss_pred CEEEEeCCCCEEEEEEEE
Confidence 589999999999999984
No 120
>PF04459 DUF512: Protein of unknown function (DUF512); InterPro: IPR007549 This is a domain of uncharacterised prokaryotic proteins. It is often found C-terminal to the radical SAM domain (IPR007197 from INTERPRO).
Probab=23.95 E-value=52 Score=30.69 Aligned_cols=28 Identities=25% Similarity=0.357 Sum_probs=19.4
Q ss_pred CCCcHHHHHHHHHHHc----CCCceEEEEEec
Q 018393 203 VGEDVVGELTKAMERI----GLDMRVAALVND 230 (356)
Q Consensus 203 ~G~dv~~lL~~al~r~----~l~v~v~aivND 230 (356)
.|.-....|+..+++- |++++|++|-|+
T Consensus 104 TG~la~~~l~~~~~~l~~~~~~~v~V~~V~N~ 135 (204)
T PF04459_consen 104 TGVLAYPFLKPLVEKLNRIPGLEVEVVPVKNR 135 (204)
T ss_pred eeHHHHHHHHHHHHHHhccCCCeEEEEEeecC
Confidence 3455555555555443 789999999999
No 121
>PTZ00400 DnaK-type molecular chaperone; Provisional
Probab=23.33 E-value=1.7e+02 Score=31.97 Aligned_cols=21 Identities=29% Similarity=0.520 Sum_probs=19.1
Q ss_pred cEEEEEeCCceeEEEEEEEcC
Q 018393 96 LFYALDLGGTNFRVLRVQLGG 116 (356)
Q Consensus 96 ~fLalDlGGTnlRv~~V~L~g 116 (356)
.+|.+||||.++-|.++++.+
T Consensus 227 ~vlV~DlGgGT~DvSv~~~~~ 247 (663)
T PTZ00400 227 TIAVYDLGGGTFDISILEILG 247 (663)
T ss_pred EEEEEeCCCCeEEEEEEEecC
Confidence 689999999999999999854
No 122
>PRK09472 ftsA cell division protein FtsA; Reviewed
Probab=23.11 E-value=3.2e+02 Score=27.86 Aligned_cols=59 Identities=8% Similarity=0.135 Sum_probs=33.1
Q ss_pred cEEEEEeCCceeEEEEEEEcCCcceeEEEEeEeeccCccccccCchHHHHHHHHHHHHHHhh
Q 018393 96 LFYALDLGGTNFRVLRVQLGGREGRVVKQEFEEVSIPPHLMTGSSHELFDYIAAALAKFVAT 157 (356)
Q Consensus 96 ~fLalDlGGTnlRv~~V~L~g~~~~~~~~~~~~~~Ip~~~~~~~~~~LFd~IA~~I~~fl~~ 157 (356)
.+.+||+|-|..++++.++.+++...+... ...+ ...+..|.-.+ .+-.+++|.+-+++
T Consensus 9 ~i~~lDIGsskv~~vv~~~~~~~~~~i~g~-~~~~-s~gi~~G~I~d-~~~~~~aI~~av~~ 67 (420)
T PRK09472 9 LVVGLEIGTAKVAALVGEVLPDGMVNIIGV-GSCP-SRGMDKGGVND-LESVVKCVQRAIDQ 67 (420)
T ss_pred EEEEEEcccceEEEEEEEEcCCCCEEEEEE-EEcc-CCCccCCEEEc-HHHHHHHHHHHHHH
Confidence 588999999999999888865443222211 1111 33445553222 34445555555554
No 123
>PRK00199 ihfB integration host factor subunit beta; Reviewed
Probab=22.43 E-value=2.2e+02 Score=22.67 Aligned_cols=36 Identities=11% Similarity=0.197 Sum_probs=29.7
Q ss_pred HHHHHHHHHH-cCCCHHHHHHHHHHHHHHHHHhhcCC
Q 018393 38 VAILKEMEEK-CGTPIGKLRQVADAMTVEMHAGLASE 73 (356)
Q Consensus 38 ~~~l~~~~~~-~~~~~~~L~~i~~~f~~em~~gL~~~ 73 (356)
.++++.+.+. ..++..+...+.+.|.++|.+.|...
T Consensus 4 ~eli~~ia~~~~~~s~~~~~~vv~~~~~~i~~~L~~g 40 (94)
T PRK00199 4 SELIERLAARNPHLSAKDVENAVKEILEEMSDALARG 40 (94)
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHcC
Confidence 3566677654 46899999999999999999999764
No 124
>PF03652 UPF0081: Uncharacterised protein family (UPF0081); InterPro: IPR005227 Holliday junction resolvases (HJRs) are key enzymes of DNA recombination. The principal HJRs are now known or confidently predicted for all bacteria and archaea whose genomes have been completely sequenced, with many species encoding multiple potential HJRs. Structural and evolutionary relationships of HJRs and related nucleases suggests that the HJR function has evolved independently from at least four distinct structural folds, namely RNase H, endonuclease, endonuclease VII-colicin E and RusA (IPR008822 from INTERPRO): The endonuclease fold, whose structural prototypes are the phage exonuclease, the very short patch repair nuclease (Vsr) and type II restriction enzymes, is shown to encompass by far a greater diversity of nucleases than previously suspected. This fold unifies archaeal HJRs (IPR002732 from INTERPRO), repair nucleases such as RecB (IPR004586 from INTERPRO) and Vsr (IPR004603 from INTERPRO), restriction enzymes and a variety of predicted nucleases whose specific activities remain to be determined. The RNase H fold characterises the RuvC family (IPR002176 from INTERPRO), which is nearly ubiquitous in bacteria, and in addition the YqgF family (IPR005227 from INTERPRO). The proteins of this family, typified by Escherichia coli YqgF, are likely to function as an alternative to RuvC in most bacteria, but could be the principal HJRs in low-GC Gram-positive bacteria and Aquifex. Endonuclease VII of phage T4 (IPR004211 from INTERPRO) is shown to serve as a structural template for many nucleases, including McrA and other type II restriction enzymes. Together with colicin E7, endonuclease VII defines a distinct metal-dependent nuclease fold. Horizontal gene transfer, lineage-specific gene loss and gene family expansion, and non-orthologous gene displacement seem to have been major forces in the evolution of HJRs and related nucleases. A remarkable case of displacement is seen in the Lyme disease spirochete Borrelia burgdorferi, which does not possess any of the typical HJRs, but instead encodes, in its chromosome and each of the linear plasmids, members of the exonuclease family predicted to function as HJRs. The diversity of HJRs and related nucleases in bacteria and archaea contrasts with their near absence in eukaryotes. The few detected eukaryotic representatives of the endonuclease fold and the RNase H fold have probably been acquired from bacteria via horizontal gene transfer. The identity of the principal HJR(s) involved in recombination in eukaryotes remains uncertain; this function could be performed by topoisomerase IB or by a novel, so far undetected, class of enzymes. Likely HJRs and related nucleases were identified in the genomes of numerous bacterial and eukaryotic DNA viruses. Gene flow between viral and cellular genomes has probably played a major role in the evolution of this class of enzymes. This family represents the YqgF family of putative Holliday junction resolvases. With the exception of the spirochetes, the YqgF family is represented in all bacterial lineages, including the mycoplasmas with their highly degenerate genomes. The RuvC resolvases are conspicuously absent in the low-GC Gram-positive bacterial lineage, with the exception of Ureaplasma parvum (Ureaplasma urealyticum biotype 1) (Q9PQY7 from SWISSPROT, []). Furthermore, loss of function ruvC mutants of E. coli show a residual HJR activity that cannot be ascribed to the prophage-encoded RusA resolvase []. This suggests that the YqgF family proteins could be alternative HJRs whose function partially overlaps with that of RuvC [].; GO: 0016788 hydrolase activity, acting on ester bonds, 0006281 DNA repair, 0006310 DNA recombination, 0006974 response to DNA damage stimulus, 0005737 cytoplasm; PDB: 1NU0_A 1OVQ_A 1NMN_B 1VHX_B 1IV0_A.
Probab=22.05 E-value=1.6e+02 Score=25.43 Aligned_cols=19 Identities=16% Similarity=0.202 Sum_probs=15.3
Q ss_pred cEEEEEeCCceeEEEEEEE
Q 018393 96 LFYALDLGGTNFRVLRVQL 114 (356)
Q Consensus 96 ~fLalDlGGTnlRv~~V~L 114 (356)
++||||+|-...=+|+-.-
T Consensus 2 riL~lD~G~kriGiAvsd~ 20 (135)
T PF03652_consen 2 RILGLDYGTKRIGIAVSDP 20 (135)
T ss_dssp EEEEEEECSSEEEEEEEET
T ss_pred eEEEEEeCCCeEEEEEecC
Confidence 5899999998877777644
No 125
>TIGR02744 TrbI_Ftype type-F conjugative transfer system protein TrbI. This protein is an essential component of the F-type conjugative transfer sytem for plasmid DNA transfer and has been shown to be localized to the periplasm.
Probab=21.95 E-value=1.5e+02 Score=25.23 Aligned_cols=50 Identities=8% Similarity=0.049 Sum_probs=33.4
Q ss_pred HHHHHHHHHH---HcCCCHHHHHHHHHHHHHHHHHhhcC--CCCCcceeeecccc
Q 018393 37 AVAILKEMEE---KCGTPIGKLRQVADAMTVEMHAGLAS--EGGSKLKMLISYVD 86 (356)
Q Consensus 37 ~~~~l~~~~~---~~~~~~~~L~~i~~~f~~em~~gL~~--~~~s~l~MlPS~v~ 86 (356)
.++.+++|.+ +-.++.++.++...+|...|++-|+. ..+..+-+-+..|.
T Consensus 39 mk~tld~F~~q~~~~~lte~q~~~~~~rF~~~L~~~L~~yq~~H~~vILvspAVv 93 (112)
T TIGR02744 39 MKQTLDAFFDSASQKKLSEAQQKALLGRFNALLEAELQAWQAQHHAIILVSPAVV 93 (112)
T ss_pred cHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHhCCEEEEechhhh
Confidence 4444444444 34479999999999999999999963 12234555555553
No 126
>TIGR00199 cinA_cterm competence/damage-inducible protein CinA C-terminal domain. CinA is a DNA damage- or competence-inducible protein that is polycistronic with recA in a number of species. Several bacterial species have a protein consisting largely of the C-terminal domain of CinA but lacking the N-terminal domain.
Probab=21.48 E-value=4e+02 Score=23.34 Aligned_cols=55 Identities=22% Similarity=0.397 Sum_probs=36.7
Q ss_pred HcCCCHHHHHH---HHHHHHHHHHHhhcCCCCCcceeeecccccCCCC----Cccc-cEEEEEe
Q 018393 47 KCGTPIGKLRQ---VADAMTVEMHAGLASEGGSKLKMLISYVDNLPTG----DEKG-LFYALDL 102 (356)
Q Consensus 47 ~~~~~~~~L~~---i~~~f~~em~~gL~~~~~s~l~MlPS~v~~lP~G----~E~G-~fLalDl 102 (356)
.+.+|.+.|++ ++.....+|-+|.....++++.---|-+.. |+| ++.| .|++|-.
T Consensus 52 lLgV~~~~i~~~gavS~e~a~~MA~g~~~~~~adi~ia~TG~AG-P~~~~~~~pvGtv~ial~~ 114 (146)
T TIGR00199 52 LLGVSQETLARFGAVSEECAAEMALGVKERFGADVGIAISGIAG-PDGGEEEKPGGTVWFIWII 114 (146)
T ss_pred HhCCCHHHHHhcCCCCHHHHHHHHHHHHHHcCCCEEEEeeccCC-CCCCCCCCCCeEEEEEEEe
Confidence 34578787777 788888888888765444666666666643 554 4556 4777765
No 127
>cd01817 RGS12_RBD Ubiquitin domain of RGS12 and RGS14. RGS12 (regulator of G signalling 12), and RGS14, are members of a family of GTPase-activating proteins (GAP's) specific for the G-alpha subunit, which act as key inhibitors of G-protein-mediated cell responses in eukaryotes. Their domain architecture includes tandem RBD domains as well as PDZ , PTB, and RGS, and GoLoco domains.
Probab=21.41 E-value=97 Score=24.39 Aligned_cols=24 Identities=21% Similarity=0.338 Sum_probs=19.5
Q ss_pred CCCcHHHHHHHHHHHcCCCceEEE
Q 018393 203 VGEDVVGELTKAMERIGLDMRVAA 226 (356)
Q Consensus 203 ~G~dv~~lL~~al~r~~l~v~v~a 226 (356)
-|..+.+.|..++++||++..-++
T Consensus 18 pG~ti~d~L~kllekRgl~~~~~~ 41 (73)
T cd01817 18 PGESIRDLLSGLCEKRGINYAAVD 41 (73)
T ss_pred CCCCHHHHHHHHHHHcCCChhHEE
Confidence 378999999999999998754433
No 128
>TIGR00555 panK_eukar pantothenate kinase, eukaryotic/staphyloccocal type. This model describes a eukaryotic form of pantothenate kinase, characterized from the fungus Aspergillus nidulans and with similar forms known in several other eukaryotes. It also includes forms from several Gram-positive bacteria suggested to have originated from the eukaryotic form by lateral transfer. It differs in a number of biochemical properties (such as inhibition by acetyl-CoA) from most bacterial CoaA and lacks sequence similarity. This enzyme is the key regulatory step in the biosynthesis of coenzyme A (CoA).
Probab=21.28 E-value=2.2e+02 Score=27.79 Aligned_cols=17 Identities=29% Similarity=0.520 Sum_probs=15.0
Q ss_pred EEEEEeCCceeEEEEEE
Q 018393 97 FYALDLGGTNFRVLRVQ 113 (356)
Q Consensus 97 fLalDlGGTnlRv~~V~ 113 (356)
.++||+|||..+++...
T Consensus 2 ~iGiDiGgT~~Kiv~~~ 18 (279)
T TIGR00555 2 RIGIDIGGTLIKVVYEE 18 (279)
T ss_pred eEEEEeCcceEEEEEEc
Confidence 58999999999998864
No 129
>PF09907 DUF2136: Uncharacterized protein conserved in bacteria (DUF2136); InterPro: IPR018669 HigB (YgjN) is the toxin of the HigB-HigA toxin-antitoxin system, acting as a translation-dependent mRNA interferase. HigB inhibits protein synthesis by cleaving translated mRNAs within the coding region []. ; GO: 0016788 hydrolase activity, acting on ester bonds
Probab=20.57 E-value=1.1e+02 Score=24.03 Aligned_cols=20 Identities=15% Similarity=0.630 Sum_probs=16.7
Q ss_pred ccEEEEEeCCceeEEE-EEEE
Q 018393 95 GLFYALDLGGTNFRVL-RVQL 114 (356)
Q Consensus 95 G~fLalDlGGTnlRv~-~V~L 114 (356)
+.+.+.|+||.++|+. .|..
T Consensus 36 ~~~~vFnI~GN~yRlI~~I~f 56 (76)
T PF09907_consen 36 NNRVVFNIGGNKYRLIAKIDF 56 (76)
T ss_pred CCEEEEEcCCCcEEEEEEEEe
Confidence 6799999999999984 4555
No 130
>TIGR00988 hip integration host factor, beta subunit. This protein forms a site-specific DNA-binding heterodimer with the homologous integration host factor alpha subunit. It is closely related to the DNA-binding protein HU.
Probab=20.42 E-value=2.5e+02 Score=22.19 Aligned_cols=36 Identities=14% Similarity=0.261 Sum_probs=29.7
Q ss_pred HHHHHHHHHHc-CCCHHHHHHHHHHHHHHHHHhhcCC
Q 018393 38 VAILKEMEEKC-GTPIGKLRQVADAMTVEMHAGLASE 73 (356)
Q Consensus 38 ~~~l~~~~~~~-~~~~~~L~~i~~~f~~em~~gL~~~ 73 (356)
.++++.+.+.. .++..+...+.+.|.++|.+.|...
T Consensus 4 ~eli~~i~~~~~~~s~~~v~~vv~~~~~~i~~~L~~g 40 (94)
T TIGR00988 4 SELIERIATQQSHLPAKDVEDAVKTMLEHMASALAQG 40 (94)
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHcC
Confidence 45677777654 5899999999999999999999764
No 131
>COG0443 DnaK Molecular chaperone [Posttranslational modification, protein turnover, chaperones]
Probab=20.28 E-value=3.8e+02 Score=28.83 Aligned_cols=144 Identities=17% Similarity=0.115 Sum_probs=0.0
Q ss_pred ccEEEEEeCCceeEEEEEEEcCCcceeEEEEeEeeccCcccc-ccCchHHHHHHHHHHHHHHhhcCCCCCCCCCcceeee
Q 018393 95 GLFYALDLGGTNFRVLRVQLGGREGRVVKQEFEEVSIPPHLM-TGSSHELFDYIAAALAKFVATEGEGFHVSPGRQRELG 173 (356)
Q Consensus 95 G~fLalDlGGTnlRv~~V~L~g~~~~~~~~~~~~~~Ip~~~~-~~~~~~LFd~IA~~I~~fl~~~~~~~~~~~~~~l~lG 173 (356)
..+++||||-||-=|+.++-++ ...+..-......+|.-+- ....+-++.+-|..-.-- .+...=
T Consensus 5 ~~~iGIDlGTTNS~vA~~~~~~-~~~vi~n~~g~r~~PSvv~f~~~~~~~vG~~A~~q~~~-------------~p~~t~ 70 (579)
T COG0443 5 KKAIGIDLGTTNSVVAVMRGGG-LPKVIENAEGERLTPSVVAFSKNGEVLVGQAAKRQAVD-------------NPENTI 70 (579)
T ss_pred ceEEEEEcCCCcEEEEEEeCCC-CceEecCCCCCcccceEEEECCCCCEEecHHHHHHhhh-------------CCcceE
Q ss_pred eeeeeeeeeccCCc-eEEEeeccceecCCCCCCcHHHHHH------------------------------HHHHHcCCCc
Q 018393 174 FTFSFPVRQTSIAS-GDLIKWTKGFSIEDTVGEDVVGELT------------------------------KAMERIGLDM 222 (356)
Q Consensus 174 fTFSFP~~q~~i~~-g~Li~wtKgF~~~~v~G~dv~~lL~------------------------------~al~r~~l~v 222 (356)
|-|+..+--.+... .....++|-|...++...-+..+.+ +|.+..|+++
T Consensus 71 ~~~kr~~G~~~~~~~~~~~~~~~~~~~eeisa~~L~~lk~~ae~~lg~~v~~~VItVPayF~d~qR~at~~A~~iaGl~v 150 (579)
T COG0443 71 FSIKRKIGRGSNGLKISVEVDGKKYTPEEISAMILTKLKEDAEAYLGEKVTDAVITVPAYFNDAQRQATKDAARIAGLNV 150 (579)
T ss_pred EEEehhcCCCCCCCcceeeeCCeeeCHHHHHHHHHHHHHHHHHHhhCCCcceEEEEeCCCCCHHHHHHHHHHHHHcCCCe
Q ss_pred eEEEEEecchhhhhcccccCCCceEEEEeccc
Q 018393 223 RVAALVNDTIGTLAGGRYHNKDAIAAVILGTG 254 (356)
Q Consensus 223 ~v~aivNDTVaTLla~~y~~~~~~iGlIlGTG 254 (356)
- .++|+.+|..++-.........=+|+--|
T Consensus 151 l--rlinEPtAAAlayg~~~~~~~~vlV~DlG 180 (579)
T COG0443 151 L--RLINEPTAAALAYGLDKGKEKTVLVYDLG 180 (579)
T ss_pred E--EEecchHHHHHHhHhccCCCcEEEEEEcC
No 132
>PF02615 Ldh_2: Malate/L-lactate dehydrogenase; InterPro: IPR003767 The malate dehydrogenase (MDH) of some extremophilies is more similar to the L-lactate dehydrogenases (L-LDH) 1.1.1.27 from EC from various sources than to other MDHs []. This family consists of bacterial and archaeal malate/L-lactate dehydrogenases. The archaebacterial malate dehydrogenase 1.1.1.37 from EC, 1.1.1.82 from EC deviates from the eubacterial and eukaryotic enzymes having a low selectivity for the coenzyme (NAD(H) or NADP(H)) and catalyzing the reduction of oxalacetate to malate more efficiently than the reverse reaction [].; GO: 0016491 oxidoreductase activity, 0008152 metabolic process, 0055114 oxidation-reduction process; PDB: 1VBI_A 2G8Y_B 2X06_H 1Z2I_B 1X0A_A 1V9N_A 1XRH_G 3I0P_A 2CWH_B 2CWF_B ....
Probab=20.19 E-value=1.2e+02 Score=30.42 Aligned_cols=70 Identities=19% Similarity=0.189 Sum_probs=47.6
Q ss_pred hHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhcCCCCCcceeeecccccCCCCCc--cccEEEEEeCCc
Q 018393 33 RWARAVAILKEMEEKCGTPIGKLRQVADAMTVEMHAGLASEGGSKLKMLISYVDNLPTGDE--KGLFYALDLGGT 105 (356)
Q Consensus 33 ~~~~~~~~l~~~~~~~~~~~~~L~~i~~~f~~em~~gL~~~~~s~l~MlPS~v~~lP~G~E--~G~fLalDlGGT 105 (356)
...++++.+.++-....++.++-..+++.+.+-=..|..+|+ +..||.|+..+-.|.- ..++-.+.-.++
T Consensus 4 ~~~~l~~~~~~il~~~G~~~~~A~~vA~~Lv~Adl~G~~SHG---v~rlp~Y~~~l~~G~i~~~~~~~i~~~~~a 75 (335)
T PF02615_consen 4 SAEELKAFVTDILQAAGVSEEDAEIVADVLVEADLRGVDSHG---VARLPRYVKRLRSGRINPRAEPKIVRETPA 75 (335)
T ss_dssp -HHHHHHHHHHHHHHTT--HHHHHHHHHHHHHHHHTT-GGGT---GGGHHHHHHHHHTTSSBSS---EEEEEETT
T ss_pred CHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCCccCC---HhHHHHHHHHhhcCcccCCCCeEEEeccCe
Confidence 346788888888888899999999999999887777776643 7899999987666643 334544444443
Done!