BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 018394
(356 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4A9A|A Chain A, Structure Of Rbg1 In Complex With Tma46 Dfrp Domain
pdb|4A9A|B Chain B, Structure Of Rbg1 In Complex With Tma46 Dfrp Domain
Length = 376
Score = 348 bits (892), Expect = 4e-96, Method: Compositional matrix adjust.
Identities = 166/313 (53%), Positives = 219/313 (69%), Gaps = 3/313 (0%)
Query: 11 GFEVTKFGHGRVALIGFPSVGKSXXXXXXXXXHSEAASYEFTTLTCIPGIIHYNDTKIQL 70
GF+V + G V +GFPSVGKS SEAA YEFTTL +PG+I Y KIQ+
Sbjct: 64 GFDVARTGVASVGFVGFPSVGKSTLLSKLTGTESEAAEYEFTTLVTVPGVIRYKGAKIQM 123
Query: 71 LDLPGIIEGASEGKGRGRQVIAVSKSSDIVLMVLDASKSEGHRQILTKELEAVGLRLNKR 130
LDLPGII+GA +G+GRG+QVIAV+++ +++ ++LD +K H+QI+ KELE VG+RLNK
Sbjct: 124 LDLPGIIDGAKDGRGRGKQVIAVARTCNLLFIILDVNKPLHHKQIIEKELEGVGIRLNKT 183
Query: 131 PPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNAEVLFREDATVDDLIDVIE 190
PP I KKK+ GGIS +T+PLTH+ ++ EY+I++AE+ FR DATVDDLIDV+E
Sbjct: 184 PPDILIKKKEKGGISITNTVPLTHLGNDEIRAVMSEYRINSAEIAFRCDATVDDLIDVLE 243
Query: 191 G-NRKYMKCVYVYNKXXXXXXXXXXKLARQPNSVVISCNLKLNLDRLLARMWEEMGLVRV 249
+R+YM +YV NK L R PN+V IS NLD LL MW+ + LVR+
Sbjct: 244 ASSRRYMPAIYVLNKIDSLSIEELELLYRIPNAVPISSGQDWNLDELLQVMWDRLNLVRI 303
Query: 250 YTKPQGQQPDFTEPVVLSVDRGGCTVEDFCNHIHRSLVKDVKYVLVWGTSARHYPQHCGL 309
YTKP+GQ PDFT+PVVL DR C+V+DFCN IH+SLV D + LV+G+S +H PQ+ GL
Sbjct: 304 YTKPKGQIPDFTDPVVLRSDR--CSVKDFCNQIHKSLVDDFRNALVYGSSVKHQPQYVGL 361
Query: 310 GHVLQDEDVVQIV 322
H+L+DEDVV I+
Sbjct: 362 SHILEDEDVVTIL 374
>pdb|2EKI|A Chain A, Solution Structures Of The Tgs Domain Of Human
Developmentally-Regulated Gtp-Binding Protein 1
Length = 93
Score = 103 bits (257), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 47/79 (59%), Positives = 58/79 (73%), Gaps = 2/79 (2%)
Query: 244 MGLVRVYTKPQGQQPDFTEPVVLSVDRGGCTVEDFCNHIHRSLVKDVKYVLVWGTSARHY 303
+ LVR+YTKP+GQ PD+T PVVL R TVEDFC IH++L+K+ KY LVWG S +H
Sbjct: 9 LKLVRIYTKPKGQLPDYTSPVVLPYSR--TTVEDFCMKIHKNLIKEFKYALVWGLSVKHN 66
Query: 304 PQHCGLGHVLQDEDVVQIV 322
PQ G H L+DEDV+QIV
Sbjct: 67 PQKVGKDHTLEDEDVIQIV 85
>pdb|1UDX|A Chain A, Crystal Structure Of The Conserved Protein Tt1381 From
Thermus Thermophilus Hb8
Length = 416
Score = 69.3 bits (168), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 43/119 (36%), Positives = 64/119 (53%), Gaps = 2/119 (1%)
Query: 22 VALIGFPSVGKSXXXXXXXXXHSEAASYEFTTLTCIPGIIHYNDT-KIQLLDLPGIIEGA 80
V L+G+P+ GKS H + A Y FTTL+ G++ ++ + L D+PGIIEGA
Sbjct: 160 VGLVGYPNAGKSSLLAAMTRAHPKIAPYPFTTLSPNLGVVEVSEEERFTLADIPGIIEGA 219
Query: 81 SEGKGRGRQVIAVSKSSDIVLMVLDASKSE-GHRQILTKELEAVGLRLNKRPPQIYFKK 138
SEGKG G + + + ++L VLDA+ + L KE+ A L +RP + K
Sbjct: 220 SEGKGLGLEFLRHIARTRVLLYVLDAADEPLKTLETLRKEVGAYDPALLRRPSLVALNK 278
>pdb|1LNZ|A Chain A, Structure Of The Obg Gtp-Binding Protein
pdb|1LNZ|B Chain B, Structure Of The Obg Gtp-Binding Protein
Length = 342
Score = 68.2 bits (165), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 44/123 (35%), Positives = 61/123 (49%), Gaps = 6/123 (4%)
Query: 22 VALIGFPSVGKSXXXXXXXXXHSEAASYEFTTLTCIPGIIHYNDTK-IQLLDLPGIIEGA 80
V L+GFPSVGKS + A Y FTTL G + +D + DLPG+IEGA
Sbjct: 161 VGLVGFPSVGKSTLLSVVSSAKPKIADYHFTTLVPNLGXVETDDGRSFVXADLPGLIEGA 220
Query: 81 SEGKGRGRQVIAVSKSSDIVLMVLDASKSEGHRQ-----ILTKELEAVGLRLNKRPPQIY 135
+G G G Q + + + +++ V+D S EG + +EL LRL +RP I
Sbjct: 221 HQGVGLGHQFLRHIERTRVIVHVIDXSGLEGRDPYDDYLTINQELSEYNLRLTERPQIIV 280
Query: 136 FKK 138
K
Sbjct: 281 ANK 283
>pdb|1JAL|A Chain A, Ychf Protein (Hi0393)
pdb|1JAL|B Chain B, Ychf Protein (Hi0393)
Length = 363
Score = 45.4 bits (106), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 25/97 (25%), Positives = 46/97 (47%), Gaps = 17/97 (17%)
Query: 21 RVALIGFPSVGKSXXXXXXXXXHSEAASYEFTTLTCIPGIIHYND--------------- 65
+ ++G P+VGKS EAA+Y F T+ G++ D
Sbjct: 4 KCGIVGLPNVGKSTLFNALTKAGIEAANYPFCTIEPNTGVVPMPDPRLDALAEIVKPERI 63
Query: 66 --TKIQLLDLPGIIEGASEGKGRGRQVIAVSKSSDIV 100
T ++ +D+ G++ GAS+G+G G + +A + +D +
Sbjct: 64 LPTTMEFVDIAGLVAGASKGEGLGNKFLANIRETDAI 100
>pdb|2DWQ|A Chain A, Thermus Thermophilus Ychf Gtp-Binding Protein
pdb|2DWQ|B Chain B, Thermus Thermophilus Ychf Gtp-Binding Protein
Length = 368
Score = 42.4 bits (98), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 24/92 (26%), Positives = 43/92 (46%), Gaps = 21/92 (22%)
Query: 22 VALIGFPSVGKSXXXXXXXXXHSEAASYEFTTLTCIPGIIHYND---------------- 65
V ++G P+VGKS ++ AA+Y F T+ G++ D
Sbjct: 4 VGIVGLPNVGKSTLFNALTRANALAANYPFATIDKNVGVVPLEDERLYALQRTFAKGERV 63
Query: 66 -----TKIQLLDLPGIIEGASEGKGRGRQVIA 92
T ++ +D+ G+++GA +G+G G Q +A
Sbjct: 64 PPVVPTHVEFVDIAGLVKGAHKGEGLGNQFLA 95
>pdb|2QU8|A Chain A, Crystal Structure Of Putative Nucleolar Gtp-Binding
Protein 1 Pff0625w From Plasmodium Falciparum
Length = 228
Score = 42.4 bits (98), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 25/92 (27%), Positives = 45/92 (48%), Gaps = 2/92 (2%)
Query: 22 VALIGFPSVGKSXXXXXXXXXHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGAS 81
+ L G P+VGKS + + SY FTT G + K Q++D PG+++ A
Sbjct: 32 IILSGAPNVGKSSFMNIVSRANVDVQSYSFTTKNLYVGHFDHKLNKYQIIDTPGLLDRAF 91
Query: 82 EGKG--RGRQVIAVSKSSDIVLMVLDASKSEG 111
E + + A++ + ++L ++D S+ G
Sbjct: 92 ENRNTIEMTTITALAHINGVILFIIDISEQCG 123
>pdb|2DBY|A Chain A, Crystal Structure Of The Gtp-Binding Protein Ychf In
Complexed With Gdp
Length = 368
Score = 42.4 bits (98), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 24/92 (26%), Positives = 43/92 (46%), Gaps = 21/92 (22%)
Query: 22 VALIGFPSVGKSXXXXXXXXXHSEAASYEFTTLTCIPGIIHYND---------------- 65
V ++G P+VGKS ++ AA+Y F T+ G++ D
Sbjct: 4 VGIVGLPNVGKSTLFNALTRANALAANYPFATIDKNVGVVPLEDERLYALQRTFAKGERV 63
Query: 66 -----TKIQLLDLPGIIEGASEGKGRGRQVIA 92
T ++ +D+ G+++GA +G+G G Q +A
Sbjct: 64 PPVVPTHVEFVDIAGLVKGAHKGEGLGNQFLA 95
>pdb|1WXQ|A Chain A, Crystal Structure Of Gtp Binding Protein From Pyrococcus
Horikoshii Ot3
Length = 397
Score = 38.9 bits (89), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 27/110 (24%), Positives = 48/110 (43%), Gaps = 24/110 (21%)
Query: 22 VALIGFPSVGKSXXXXXXXXXHSEAASYEFTT------------------LTCIPGIIHY 63
+ ++G P+VGKS E A+Y FTT L C P +Y
Sbjct: 3 IGVVGKPNVGKSTFFSAATLVDVEIANYPFTTIEANVGVTYAITDHPCKELGCSPNPQNY 62
Query: 64 NDTK------IQLLDLPGIIEGASEGKGRGRQVIAVSKSSDIVLMVLDAS 107
++ +D+ G++ GA EG+G G + + + + ++ V+DA+
Sbjct: 63 EYRNGLALIPVKXVDVAGLVPGAHEGRGLGNKFLDDLRXASALIHVVDAT 112
>pdb|2WJG|A Chain A, Structure And Function Of The Feob G-Domain From
Methanococcus Jannaschii
pdb|2WJG|B Chain B, Structure And Function Of The Feob G-Domain From
Methanococcus Jannaschii
Length = 188
Score = 37.7 bits (86), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 34/115 (29%), Positives = 56/115 (48%), Gaps = 8/115 (6%)
Query: 21 RVALIGFPSVGKSXXXXXXXXXHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGI--IE 78
+ALIG P+VGKS + ++ T+ G YN K +++DLPG+ +
Sbjct: 9 EIALIGNPNVGKSTIFNALTGENVYIGNWPGVTVEKKEGEFEYNGEKFKVVDLPGVYSLT 68
Query: 79 GASEGKGRGRQVIAVSKSSDIVLMVLDASKSEGHRQILTKELEAVG----LRLNK 129
S + R I +++ D+V+ ++DA+ E LT +L +G L LNK
Sbjct: 69 ANSIDEIIARDYI-INEKPDLVVNIVDATALE-RNLYLTLQLMEMGANLLLALNK 121
>pdb|2WJI|A Chain A, Structure And Function Of The Feob G-Domain From
Methanococcus Jannaschii
pdb|2WJI|B Chain B, Structure And Function Of The Feob G-Domain From
Methanococcus Jannaschii
Length = 165
Score = 37.4 bits (85), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 34/115 (29%), Positives = 56/115 (48%), Gaps = 8/115 (6%)
Query: 21 RVALIGFPSVGKSXXXXXXXXXHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGI--IE 78
+ALIG P+VGKS + ++ T+ G YN K +++DLPG+ +
Sbjct: 5 EIALIGNPNVGKSTIFNALTGENVYIGNWPGVTVEKKEGEFEYNGEKFKVVDLPGVYSLT 64
Query: 79 GASEGKGRGRQVIAVSKSSDIVLMVLDASKSEGHRQILTKELEAVG----LRLNK 129
S + R I +++ D+V+ ++DA+ E LT +L +G L LNK
Sbjct: 65 ANSIDEIIARDYI-INEKPDLVVNIVDATALE-RNLYLTLQLMEMGANLLLALNK 117
>pdb|2WJH|A Chain A, Structure And Function Of The Feob G-Domain From
Methanococcus Jannaschii
pdb|2WJH|B Chain B, Structure And Function Of The Feob G-Domain From
Methanococcus Jannaschii
Length = 166
Score = 37.4 bits (85), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 34/115 (29%), Positives = 56/115 (48%), Gaps = 8/115 (6%)
Query: 21 RVALIGFPSVGKSXXXXXXXXXHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGI--IE 78
+ALIG P+VGKS + ++ T+ G YN K +++DLPG+ +
Sbjct: 5 EIALIGNPNVGKSTIFNALTGENVYIGNWPGVTVEKKEGEFEYNGEKFKVVDLPGVYSLT 64
Query: 79 GASEGKGRGRQVIAVSKSSDIVLMVLDASKSEGHRQILTKELEAVG----LRLNK 129
S + R I +++ D+V+ ++DA+ E LT +L +G L LNK
Sbjct: 65 ANSIDEIIARDYI-INEKPDLVVNIVDATALE-RNLYLTLQLMEMGANLLLALNK 117
>pdb|2E87|A Chain A, Crystal Structure Of Hypothetical Gtp-Binding Protein
Ph1320 From Pyrococcus Horikoshii Ot3, In Complex With
Gdp
Length = 357
Score = 37.4 bits (85), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 22/89 (24%), Positives = 42/89 (47%), Gaps = 2/89 (2%)
Query: 22 VALIGFPSVGKSXXXXXXXXXHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEG-- 79
V + G P+VGKS E ASY FTT G + Q++D PG+++
Sbjct: 170 VVIAGHPNVGKSTLLKALTTAKPEIASYPFTTRGINVGQFEDGYFRYQIIDTPGLLDRPI 229
Query: 80 ASEGKGRGRQVIAVSKSSDIVLMVLDASK 108
+ + + ++A+ ++++ + D S+
Sbjct: 230 SERNEIEKQAILALRYLGNLIIYIFDPSE 258
>pdb|2WJJ|A Chain A, Structure And Function Of The Feob G-Domain From
Methanococcus Jannaschii
pdb|2WJJ|B Chain B, Structure And Function Of The Feob G-Domain From
Methanococcus Jannaschii
Length = 168
Score = 37.0 bits (84), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 34/115 (29%), Positives = 55/115 (47%), Gaps = 8/115 (6%)
Query: 21 RVALIGFPSVGKSXXXXXXXXXHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGI--IE 78
+ALIG P+VGKS + ++ T+ G YN K +++DLPG+ +
Sbjct: 6 EIALIGNPNVGKSTIFNALTGENVYIGNWPGVTVEKKEGEFEYNGEKFKVVDLPGVYSLT 65
Query: 79 GASEGKGRGRQVIAVSKSSDIVLMVLDASKSEGHRQILTKELEAVG----LRLNK 129
S + R I +++ D+V+ ++DA+ E LT +L G L LNK
Sbjct: 66 ANSIDEIIARDYI-INEKPDLVVNIVDATALE-RNLYLTLQLXEXGANLLLALNK 118
>pdb|3A1W|A Chain A, Crystal Structue Of The G Domain Of T. Maritima Feob Iron
Iransporter
Length = 168
Score = 37.0 bits (84), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 28/102 (27%), Positives = 46/102 (45%), Gaps = 1/102 (0%)
Query: 21 RVALIGFPSVGKSXXXXXXXXXHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIE-G 79
+VAL G P+VGK+ A++ T+ G+ Y I L+DLPG G
Sbjct: 7 KVALAGCPNVGKTSLFNALTGTKQYVANWPGVTVEKKEGVFTYKGYTINLIDLPGTYSLG 66
Query: 80 ASEGKGRGRQVIAVSKSSDIVLMVLDASKSEGHRQILTKELE 121
S + + + +D+V++V D+ E +L + LE
Sbjct: 67 YSSIDEKIARDYLLKGDADLVILVADSVNPEQSLYLLLEILE 108
>pdb|3A1T|A Chain A, Crystal Structue Of The Cytosolic Domain Of T. Maritima
Feob Iron Iransporter In Gdp Form Ii
pdb|3A1U|A Chain A, Crystal Structue Of The Cytosolic Domain Of T. Maritima
Feob Iron Iransporter In Gmppnp Form
pdb|3A1U|B Chain B, Crystal Structue Of The Cytosolic Domain Of T. Maritima
Feob Iron Iransporter In Gmppnp Form
pdb|3A1V|A Chain A, Crystal Structue Of The Cytosolic Domain Of T. Maritima
Feob Iron Iransporter In Apo Form
pdb|3A1V|B Chain B, Crystal Structue Of The Cytosolic Domain Of T. Maritima
Feob Iron Iransporter In Apo Form
Length = 258
Score = 37.0 bits (84), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 28/102 (27%), Positives = 46/102 (45%), Gaps = 1/102 (0%)
Query: 21 RVALIGFPSVGKSXXXXXXXXXHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIE-G 79
+VAL G P+VGK+ A++ T+ G+ Y I L+DLPG G
Sbjct: 7 KVALAGCPNVGKTSLFNALTGTKQYVANWPGVTVEKKEGVFTYKGYTINLIDLPGTYSLG 66
Query: 80 ASEGKGRGRQVIAVSKSSDIVLMVLDASKSEGHRQILTKELE 121
S + + + +D+V++V D+ E +L + LE
Sbjct: 67 YSSIDEKIARDYLLKGDADLVILVADSVNPEQSLYLLLEILE 108
>pdb|3A1S|A Chain A, Crystal Structue Of The Cytosolic Domain Of T. Maritima
Feob Iron Iransporter In Gdp Form I
pdb|3A1S|B Chain B, Crystal Structue Of The Cytosolic Domain Of T. Maritima
Feob Iron Iransporter In Gdp Form I
Length = 258
Score = 35.4 bits (80), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 25/91 (27%), Positives = 41/91 (45%), Gaps = 1/91 (1%)
Query: 21 RVALIGFPSVGKSXXXXXXXXXHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIE-G 79
+VAL G P+VGK+ A++ T+ G+ Y I L+DLPG G
Sbjct: 7 KVALAGCPNVGKTSLFNALTGTKQYVANWPGVTVEKKEGVFTYKGYTINLIDLPGTYSLG 66
Query: 80 ASEGKGRGRQVIAVSKSSDIVLMVLDASKSE 110
S + + + +D+V++V D+ E
Sbjct: 67 YSSIDEKIARDYLLKGDADLVILVADSVNPE 97
>pdb|3K53|A Chain A, Crystal Structure Of Nfeob From P. Furiosus
pdb|3K53|B Chain B, Crystal Structure Of Nfeob From P. Furiosus
pdb|3K53|C Chain C, Crystal Structure Of Nfeob From P. Furiosus
pdb|3K53|D Chain D, Crystal Structure Of Nfeob From P. Furiosus
Length = 271
Score = 34.3 bits (77), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 28/55 (50%)
Query: 22 VALIGFPSVGKSXXXXXXXXXHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGI 76
VAL+G P+VGK+ ++ T+ GI+ Y + + ++DLPGI
Sbjct: 6 VALVGNPNVGKTTIFNALTGLRQHVGNWPGVTVEKKEGIMEYREKEFLVVDLPGI 60
>pdb|3R9W|A Chain A, Crystal Structure Of Era In Complex With Mggdpnp And
Nucleotides 1506- 1542 Of 16s Ribosomal Rna
pdb|3R9X|A Chain A, Crystal Structure Of Era In Complex With Mggdpnp,
Nucleotides 1506- 1542 Of 16s Ribosomal Rna, And Ksga
Length = 307
Score = 34.3 bits (77), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 31/100 (31%), Positives = 50/100 (50%), Gaps = 9/100 (9%)
Query: 20 GRVALIGFPSVGKSXXXXXXXXXHSEAASYEF-TTLTCIPGIIHY-NDTKIQLLDLPGII 77
G VA++G P+VGKS S + TT + G+ + N+ +I LD PGI
Sbjct: 10 GYVAIVGKPNVGKSTLLNNLLGTKVSIISPKAGTTRMRVLGVKNIPNEAQIIFLDTPGIY 69
Query: 78 EGASEGKGRGRQVIAVSKSS----DIVLMVLDASKSEGHR 113
E + G ++ ++K S D++L ++DA +EG R
Sbjct: 70 E-PKKSDVLGHSMVEIAKQSLEEADVILFMIDA--TEGWR 106
>pdb|3IEV|A Chain A, Crystal Structure Of Era In Complex With Mggnp And The 3'
End Of 16s Rrna
Length = 308
Score = 34.3 bits (77), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 31/100 (31%), Positives = 50/100 (50%), Gaps = 9/100 (9%)
Query: 20 GRVALIGFPSVGKSXXXXXXXXXHSEAASYEF-TTLTCIPGIIHY-NDTKIQLLDLPGII 77
G VA++G P+VGKS S + TT + G+ + N+ +I LD PGI
Sbjct: 11 GYVAIVGKPNVGKSTLLNNLLGTKVSIISPKAGTTRMRVLGVKNIPNEAQIIFLDTPGIY 70
Query: 78 EGASEGKGRGRQVIAVSKSS----DIVLMVLDASKSEGHR 113
E + G ++ ++K S D++L ++DA +EG R
Sbjct: 71 E-PKKSDVLGHSMVEIAKQSLEEADVILFMIDA--TEGWR 107
>pdb|2OHF|A Chain A, Crystal Structure Of Human Ola1 In Complex With Amppcp
Length = 396
Score = 32.7 bits (73), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 22/111 (19%), Positives = 45/111 (40%), Gaps = 18/111 (16%)
Query: 14 VTKFGHG-RVALIGFPSVGKSXXXXXXXXXHSEAASYEFTTLTCIPGIIHYNDTKIQLL- 71
+ +FG ++ ++G P+VGKS + A ++ F T+ + D + L
Sbjct: 16 IGRFGTSLKIGIVGLPNVGKSTFFNVLTNSQASAENFPFCTIDPNESRVPVPDERFDFLC 75
Query: 72 ----------------DLPGIIEGASEGKGRGRQVIAVSKSSDIVLMVLDA 106
D+ G+++GA G+G G ++ + D + + A
Sbjct: 76 QYHKPASKIPAFLNVVDIAGLVKGAHNGQGLGNAFLSHISACDGIFHLTRA 126
>pdb|2WIA|A Chain A, Crystal Structures Of The N-Terminal Intracellular Domain
Of Feob From Klebsiella Pneumoniae In Apo Form
pdb|2WIA|B Chain B, Crystal Structures Of The N-Terminal Intracellular Domain
Of Feob From Klebsiella Pneumoniae In Apo Form
pdb|2WIB|A Chain A, Crystal Structures Of The N-Terminal Intracellular Domain
Of Feob From Klebsiella Pneumoniae In Gdp Binding State
pdb|2WIB|B Chain B, Crystal Structures Of The N-Terminal Intracellular Domain
Of Feob From Klebsiella Pneumoniae In Gdp Binding State
pdb|2WIC|A Chain A, Crystal Structures Of The N-Terminal Intracellular Domain
Of Feob From Klebsiella Pneumoniae In Gmppnp Binding
State
Length = 267
Score = 32.3 bits (72), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 25/94 (26%), Positives = 41/94 (43%), Gaps = 5/94 (5%)
Query: 22 VALIGFPSVGKSXXXXXXXXXHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGI--IEG 79
V LIG P+ GK+ ++ T+ GI D ++ L+DLPG +
Sbjct: 6 VGLIGNPNSGKTTLFNQLTGARQRVGNWAGVTVERKEGIFATTDHQVTLVDLPGTYSLTT 65
Query: 80 ASEGKGRGRQVIA---VSKSSDIVLMVLDASKSE 110
S Q+ +S +D+++ V+DAS E
Sbjct: 66 ISSQTSLDEQIACHYILSGDADMLINVVDASNLE 99
>pdb|3GEH|A Chain A, Crystal Structure Of Mnme From Nostoc In Complex With Gdp,
Folinic Acid And Zn
Length = 462
Score = 31.2 bits (69), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 25/92 (27%), Positives = 43/92 (46%), Gaps = 8/92 (8%)
Query: 21 RVALIGFPSVGKSXXXXX-XXXXHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEG 79
+VA++G P+VGKS + TT + + +Q+LD GI E
Sbjct: 226 KVAIVGRPNVGKSSLLNAWSQSDRAIVTDLPGTTRDVVESQLVVGGIPVQVLDTAGIRET 285
Query: 80 ASE----GKGRGRQVIAVSKSSDIVLMVLDAS 107
+ + G R RQ + ++D+VL+ +DA+
Sbjct: 286 SDQVEKIGVERSRQ---AANTADLVLLTIDAA 314
>pdb|2QPT|A Chain A, Crystal Structure Of An Ehd Atpase Involved In Membrane
Remodelling
Length = 550
Score = 30.8 bits (68), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 27/47 (57%), Gaps = 4/47 (8%)
Query: 68 IQLLDLPGIIEGASEGKGRGRQVIAV----SKSSDIVLMVLDASKSE 110
I ++D PGI+ GA + RG AV ++ D+++++ DA K E
Sbjct: 156 ISIIDTPGILSGAKQRVSRGYDFPAVLRWFAERVDLIILLFDAHKLE 202
>pdb|2QTF|A Chain A, Crystal Structure Of A Gtp-Binding Protein From The
Hyperthermophilic Archaeon Sulfolobus Solfataricus
pdb|2QTH|A Chain A, Crystal Structure Of A Gtp-Binding Protein From The
Hyperthermophilic Archaeon Sulfolobus Solfataricus In
Complex With Gdp
pdb|3KXI|A Chain A, Crystal Structure Of Ssgbp And Gdp Complex
Length = 364
Score = 30.8 bits (68), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 23/91 (25%), Positives = 44/91 (48%), Gaps = 1/91 (1%)
Query: 22 VALIGFPSVGKSXXXXXXXXXHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGAS 81
+ ++G+ + GK+ + + FTT++ I N+ KI L+D G I G
Sbjct: 182 IGIVGYTNSGKTSLFNSLTGLTQKVDTKLFTTMSPKRYAIPINNRKIMLVDTVGFIRGIP 241
Query: 82 EGKGRGRQV-IAVSKSSDIVLMVLDASKSEG 111
V ++ +K SD +++V+D++ SE
Sbjct: 242 PQIVDAFFVTLSEAKYSDALILVIDSTFSEN 272
>pdb|3IBY|A Chain A, Structure Of Cytosolic Domain Of L. Pneumophila Feob
pdb|3IBY|B Chain B, Structure Of Cytosolic Domain Of L. Pneumophila Feob
pdb|3IBY|C Chain C, Structure Of Cytosolic Domain Of L. Pneumophila Feob
pdb|3IBY|D Chain D, Structure Of Cytosolic Domain Of L. Pneumophila Feob
Length = 256
Score = 30.4 bits (67), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 27/106 (25%), Positives = 47/106 (44%), Gaps = 6/106 (5%)
Query: 24 LIGFPSVGKSXXXXXXXXXHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGI--IEGAS 81
LIG P+ GK+ + ++ T+ G + I++ DLPG+ + +
Sbjct: 6 LIGNPNCGKTTLFNALTNANQRVGNWPGVTVEKKTGEFLLGEHLIEITDLPGVYSLVANA 65
Query: 82 EGKGRGRQVIA---VSKSSDIVLMVLDASKSEGHRQILTKELEAVG 124
EG + Q+ A + D ++ V+DA E H LT +L +G
Sbjct: 66 EGISQDEQIAAQSVIDLEYDCIINVIDACHLERHL-YLTSQLFELG 110
>pdb|3HYR|A Chain A, Structural Insight Into G Protein Coupling And Regulation
Of Fe2+ Membrane Transport
pdb|3HYR|B Chain B, Structural Insight Into G Protein Coupling And Regulation
Of Fe2+ Membrane Transport
pdb|3HYR|C Chain C, Structural Insight Into G Protein Coupling And Regulation
Of Fe2+ Membrane Transport
Length = 270
Score = 29.6 bits (65), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 23/94 (24%), Positives = 40/94 (42%), Gaps = 5/94 (5%)
Query: 22 VALIGFPSVGKSXXXXXXXXXHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGI--IEG 79
+ LIG P+ GK+ ++ T+ G D ++ L+DLPG +
Sbjct: 6 IGLIGNPNSGKTTLFNQLTGSRQRVGNWAGVTVERKEGQFSTTDHQVTLVDLPGTYSLTT 65
Query: 80 ASEGKGRGRQVIA---VSKSSDIVLMVLDASKSE 110
S Q+ +S +D+++ V+DAS E
Sbjct: 66 ISSQTSLDEQIACHYILSGDADLLINVVDASNLE 99
>pdb|3HYT|A Chain A, Structural Basis Of Gdp Release And Gating In G Protein
Coupled Fe2+ Transport
pdb|3HYT|B Chain B, Structural Basis Of Gdp Release And Gating In G Protein
Coupled Fe2+ Transport
pdb|3HYT|C Chain C, Structural Basis Of Gdp Release And Gating In G Protein
Coupled Fe2+ Transport
Length = 270
Score = 29.6 bits (65), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 23/94 (24%), Positives = 40/94 (42%), Gaps = 5/94 (5%)
Query: 22 VALIGFPSVGKSXXXXXXXXXHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGI--IEG 79
+ LIG P+ GK+ ++ T+ G D ++ L+DLPG +
Sbjct: 6 IGLIGNPNSGKTTLFNQLTGSRQRVGNWAGVTVERKEGQFSTTDHQVTLVDLPGTYSLTT 65
Query: 80 ASEGKGRGRQVIA---VSKSSDIVLMVLDASKSE 110
S Q+ +S +D+++ V+DAS E
Sbjct: 66 ISSQTSLDEQIACHYILSGDADLLINVVDASNLE 99
>pdb|3I8S|A Chain A, Structure Of The Cytosolic Domain Of E. Coli Feob,
Nucleotide-Free Form
pdb|3I8S|B Chain B, Structure Of The Cytosolic Domain Of E. Coli Feob,
Nucleotide-Free Form
pdb|3I8S|C Chain C, Structure Of The Cytosolic Domain Of E. Coli Feob,
Nucleotide-Free Form
pdb|3I8X|A Chain A, Structure Of The Cytosolic Domain Of E. Coli Feob,
Gdp-Bound Form
pdb|3I8X|B Chain B, Structure Of The Cytosolic Domain Of E. Coli Feob,
Gdp-Bound Form
pdb|3I8X|C Chain C, Structure Of The Cytosolic Domain Of E. Coli Feob,
Gdp-Bound Form
pdb|3I92|A Chain A, Structure Of The Cytosolic Domain Of E. Coli Feob,
Gppch2p- Bound Form
pdb|3I92|B Chain B, Structure Of The Cytosolic Domain Of E. Coli Feob,
Gppch2p- Bound Form
pdb|3I92|C Chain C, Structure Of The Cytosolic Domain Of E. Coli Feob,
Gppch2p- Bound Form
Length = 274
Score = 29.3 bits (64), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 23/94 (24%), Positives = 40/94 (42%), Gaps = 5/94 (5%)
Query: 22 VALIGFPSVGKSXXXXXXXXXHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGI--IEG 79
+ LIG P+ GK+ ++ T+ G D ++ L+DLPG +
Sbjct: 6 IGLIGNPNSGKTTLFNQLTGSRQRVGNWAGVTVERKEGQFSTTDHQVTLVDLPGTYSLTT 65
Query: 80 ASEGKGRGRQVIA---VSKSSDIVLMVLDASKSE 110
S Q+ +S +D+++ V+DAS E
Sbjct: 66 ISSQTSLDEQIACHYILSGDADLLINVVDASNLE 99
>pdb|2HAG|A Chain A, Crystal Structure Of A Putative Dyp-Type Peroxidase
Protein (So_0740) From Shewanella Oneidensis At 2.75 A
Resolution
pdb|2IIZ|A Chain A, Crystal Structure Of Putative Melanin Biosynthesis Protein
Tyra With Bound Heme (Np_716371.1) From Shewanella
Oneidensis At 2.30 A Resolution
Length = 312
Score = 28.5 bits (62), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 29/61 (47%), Gaps = 8/61 (13%)
Query: 72 DLPGIIEGASEGKGRGRQVIAVSKSSD--------IVLMVLDASKSEGHRQILTKELEAV 123
DL G ++G KGR RQ +A+ S D I + + S+ HR L K+ + +
Sbjct: 146 DLTGFVDGTENPKGRHRQEVALVGSEDPEFKGGSYIHVQKYAHNLSKWHRLPLKKQEDII 205
Query: 124 G 124
G
Sbjct: 206 G 206
>pdb|3KXL|A Chain A, Crystal Structure Of Ssgbp Mutation Variant G235s
pdb|3KXL|B Chain B, Crystal Structure Of Ssgbp Mutation Variant G235s
Length = 364
Score = 28.5 bits (62), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 22/91 (24%), Positives = 43/91 (47%), Gaps = 1/91 (1%)
Query: 22 VALIGFPSVGKSXXXXXXXXXHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGAS 81
+ ++G+ + GK+ + + FTT++ I N+ KI L+D I G
Sbjct: 182 IGIVGYTNSGKTSLFNSLTGLTQKVDTKLFTTMSPKRYAIPINNRKIMLVDTVSFIRGIP 241
Query: 82 EGKGRGRQV-IAVSKSSDIVLMVLDASKSEG 111
V ++ +K SD +++V+D++ SE
Sbjct: 242 PQIVDAFFVTLSEAKYSDALILVIDSTFSEN 272
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.137 0.405
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,013,106
Number of Sequences: 62578
Number of extensions: 390273
Number of successful extensions: 762
Number of sequences better than 100.0: 32
Number of HSP's better than 100.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 17
Number of HSP's that attempted gapping in prelim test: 732
Number of HSP's gapped (non-prelim): 33
length of query: 356
length of database: 14,973,337
effective HSP length: 100
effective length of query: 256
effective length of database: 8,715,537
effective search space: 2231177472
effective search space used: 2231177472
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 52 (24.6 bits)