Query 018394
Match_columns 356
No_of_seqs 516 out of 4123
Neff 8.0
Searched_HMMs 46136
Date Fri Mar 29 08:39:15 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018394.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/018394hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG1163 DRG Predicted GTPase [ 100.0 7.4E-78 1.6E-82 551.3 27.9 317 5-324 49-365 (365)
2 KOG1486 GTP-binding protein DR 100.0 2.2E-68 4.9E-73 471.9 25.1 317 5-324 48-364 (364)
3 KOG1487 GTP-binding protein DR 100.0 3.4E-59 7.3E-64 415.1 15.7 312 7-324 47-358 (358)
4 PTZ00258 GTP-binding protein; 100.0 3.5E-43 7.5E-48 339.7 13.2 289 19-323 21-386 (390)
5 PRK09602 translation-associate 100.0 7E-43 1.5E-47 340.9 14.8 292 20-324 2-395 (396)
6 cd01896 DRG The developmentall 100.0 4E-39 8.6E-44 294.8 18.0 232 21-252 2-233 (233)
7 PRK09601 GTP-binding protein Y 100.0 1.8E-38 3.9E-43 303.7 12.4 285 20-322 3-361 (364)
8 COG0012 Predicted GTPase, prob 100.0 5.6E-37 1.2E-41 289.1 6.6 282 20-320 3-367 (372)
9 KOG1491 Predicted GTP-binding 100.0 9.6E-33 2.1E-37 254.9 10.8 287 19-322 20-388 (391)
10 TIGR00092 GTP-binding protein 100.0 2.5E-31 5.4E-36 254.6 10.8 279 20-321 3-364 (368)
11 COG1126 GlnQ ABC-type polar am 100.0 2.8E-28 6E-33 213.9 14.2 162 8-185 19-201 (240)
12 COG1136 SalX ABC-type antimicr 99.9 1.5E-27 3.2E-32 214.0 11.6 167 8-187 22-210 (226)
13 COG1116 TauB ABC-type nitrate/ 99.9 5.4E-27 1.2E-31 211.0 12.5 156 8-185 20-196 (248)
14 COG1135 AbcC ABC-type metal io 99.9 1.4E-26 3.1E-31 212.8 12.7 186 8-216 23-229 (339)
15 COG1125 OpuBA ABC-type proline 99.9 2.4E-26 5.2E-31 205.8 11.8 184 8-217 18-224 (309)
16 cd01899 Ygr210 Ygr210 subfamil 99.9 4E-27 8.7E-32 223.9 7.2 220 22-245 1-269 (318)
17 COG3839 MalK ABC-type sugar tr 99.9 7.3E-26 1.6E-30 214.5 13.3 184 7-218 19-223 (338)
18 COG2884 FtsE Predicted ATPase 99.9 9.6E-26 2.1E-30 193.9 12.0 169 2-184 11-201 (223)
19 KOG1489 Predicted GTP-binding 99.9 2E-26 4.4E-31 211.5 7.6 165 11-243 190-365 (366)
20 COG3842 PotA ABC-type spermidi 99.9 2.4E-25 5.2E-30 212.0 12.7 182 8-217 22-225 (352)
21 COG3638 ABC-type phosphate/pho 99.9 4.4E-25 9.6E-30 196.1 13.1 168 8-189 21-218 (258)
22 COG1120 FepC ABC-type cobalami 99.9 2.6E-25 5.7E-30 203.3 11.0 174 8-207 19-217 (258)
23 COG0536 Obg Predicted GTPase [ 99.9 1.8E-25 3.8E-30 207.7 9.0 171 9-247 151-335 (369)
24 COG1121 ZnuC ABC-type Mn/Zn tr 99.9 9.2E-25 2E-29 198.8 13.5 169 8-205 21-215 (254)
25 COG4181 Predicted ABC-type tra 99.9 1.6E-24 3.5E-29 183.5 11.1 169 8-189 27-216 (228)
26 COG0486 ThdF Predicted GTPase 99.9 2.5E-25 5.5E-30 215.2 5.9 185 19-287 217-408 (454)
27 COG0411 LivG ABC-type branched 99.9 1.1E-24 2.5E-29 194.7 9.3 188 8-220 21-241 (250)
28 cd01666 TGS_DRG_C TGS_DRG_C: 99.9 2.4E-24 5.3E-29 160.7 9.5 75 246-323 1-75 (75)
29 PF02421 FeoB_N: Ferrous iron 99.9 1.6E-25 3.5E-30 191.1 2.9 148 21-240 2-156 (156)
30 COG1117 PstB ABC-type phosphat 99.9 4.8E-24 1E-28 186.7 10.9 164 8-183 24-211 (253)
31 COG1124 DppF ABC-type dipeptid 99.9 8.6E-24 1.9E-28 189.0 12.5 175 8-207 24-220 (252)
32 COG1118 CysA ABC-type sulfate/ 99.9 1E-23 2.3E-28 193.6 12.7 188 8-220 19-229 (345)
33 COG3840 ThiQ ABC-type thiamine 99.9 3.3E-23 7.2E-28 177.2 13.2 158 10-184 16-194 (231)
34 COG1127 Ttg2A ABC-type transpo 99.9 1.8E-23 3.8E-28 186.4 11.4 162 8-183 25-209 (263)
35 TIGR01186 proV glycine betaine 99.9 3.1E-23 6.8E-28 200.8 14.0 178 8-207 10-208 (363)
36 PRK12299 obgE GTPase CgtA; Rev 99.9 1.1E-23 2.4E-28 202.0 10.0 161 19-245 158-328 (335)
37 PRK12296 obgE GTPase CgtA; Rev 99.9 6.6E-24 1.4E-28 211.1 8.2 179 11-248 153-343 (500)
38 COG1131 CcmA ABC-type multidru 99.9 4.7E-23 1E-27 194.7 13.4 182 8-216 22-224 (293)
39 COG1159 Era GTPase [General fu 99.9 8.2E-24 1.8E-28 194.3 7.3 236 21-346 8-262 (298)
40 PRK12298 obgE GTPase CgtA; Rev 99.9 2.3E-23 5E-28 203.5 11.0 165 19-246 159-334 (390)
41 TIGR02314 ABC_MetN D-methionin 99.9 7.6E-23 1.6E-27 196.9 14.3 177 8-207 22-219 (343)
42 COG4175 ProV ABC-type proline/ 99.9 2.8E-23 6E-28 191.2 10.0 163 8-183 45-228 (386)
43 COG1137 YhbG ABC-type (unclass 99.9 9.1E-24 2E-28 183.1 6.1 189 2-216 14-226 (243)
44 COG1122 CbiO ABC-type cobalt t 99.9 2.1E-22 4.6E-27 183.5 14.9 174 8-207 21-217 (235)
45 TIGR02729 Obg_CgtA Obg family 99.9 3.3E-23 7.1E-28 198.5 9.7 160 19-244 157-328 (329)
46 cd03255 ABC_MJ0796_Lo1CDE_FtsE 99.9 6.2E-23 1.3E-27 185.8 11.0 164 8-184 21-205 (218)
47 PRK11650 ugpC glycerol-3-phosp 99.9 1.6E-22 3.4E-27 195.9 14.5 172 8-207 21-213 (356)
48 PRK12297 obgE GTPase CgtA; Rev 99.9 3.4E-23 7.5E-28 203.5 9.0 163 19-247 158-329 (424)
49 TIGR00960 3a0501s02 Type II (G 99.9 2.2E-22 4.7E-27 182.0 13.1 162 8-183 20-201 (216)
50 PRK11432 fbpC ferric transport 99.9 2.8E-22 6.2E-27 193.7 14.5 173 8-208 23-216 (351)
51 cd03261 ABC_Org_Solvent_Resist 99.9 3.1E-22 6.7E-27 183.3 13.6 175 8-205 17-213 (235)
52 TIGR01188 drrA daunorubicin re 99.9 3.1E-22 6.7E-27 190.2 14.0 174 8-208 10-203 (302)
53 COG1160 Predicted GTPases [Gen 99.9 1.8E-23 3.9E-28 201.8 5.5 155 20-244 4-164 (444)
54 TIGR03265 PhnT2 putative 2-ami 99.9 3.4E-22 7.4E-27 193.4 14.3 173 8-208 21-214 (353)
55 PRK13537 nodulation ABC transp 99.9 3.5E-22 7.5E-27 190.1 13.7 182 8-216 24-225 (306)
56 PRK11629 lolD lipoprotein tran 99.9 2.3E-22 5E-27 184.0 11.9 163 8-183 26-209 (233)
57 TIGR02211 LolD_lipo_ex lipopro 99.9 1.6E-22 3.5E-27 183.4 10.6 163 8-183 22-205 (221)
58 PRK10070 glycine betaine trans 99.9 3.9E-22 8.5E-27 195.3 13.8 178 8-207 45-243 (400)
59 TIGR03258 PhnT 2-aminoethylpho 99.9 5E-22 1.1E-26 192.7 14.1 173 8-208 22-218 (362)
60 TIGR02673 FtsE cell division A 99.9 5.8E-22 1.3E-26 178.9 13.5 162 8-183 19-200 (214)
61 cd03259 ABC_Carb_Solutes_like 99.9 8E-22 1.7E-26 177.9 14.3 156 8-182 17-193 (213)
62 cd03294 ABC_Pro_Gly_Bertaine T 99.9 7.4E-22 1.6E-26 184.6 14.5 162 8-182 41-223 (269)
63 PRK13536 nodulation factor exp 99.9 5.6E-22 1.2E-26 191.0 14.0 182 8-216 58-259 (340)
64 cd03226 ABC_cobalt_CbiO_domain 99.9 6.3E-22 1.4E-26 177.6 13.3 154 8-183 17-189 (205)
65 cd03219 ABC_Mj1267_LivG_branch 99.9 6.4E-22 1.4E-26 181.2 13.6 175 8-207 17-221 (236)
66 PRK11000 maltose/maltodextrin 99.9 7.4E-22 1.6E-26 192.3 14.2 172 8-207 20-212 (369)
67 PRK10851 sulfate/thiosulfate t 99.9 6.9E-22 1.5E-26 191.3 13.9 173 8-208 19-216 (353)
68 PRK11153 metN DL-methionine tr 99.9 6.6E-22 1.4E-26 191.0 13.6 177 8-207 22-219 (343)
69 cd03225 ABC_cobalt_CbiO_domain 99.9 9.6E-22 2.1E-26 177.1 13.7 159 8-183 18-197 (211)
70 COG0444 DppD ABC-type dipeptid 99.9 5.3E-22 1.1E-26 184.6 12.2 193 8-218 22-243 (316)
71 PRK10584 putative ABC transpor 99.9 5E-22 1.1E-26 181.1 11.7 162 8-182 27-209 (228)
72 PRK09452 potA putrescine/sperm 99.9 8.5E-22 1.8E-26 191.8 13.8 172 8-207 31-223 (375)
73 TIGR02315 ABC_phnC phosphonate 99.9 1.2E-21 2.7E-26 180.1 13.9 175 8-205 19-222 (243)
74 COG4555 NatA ABC-type Na+ tran 99.9 4.6E-22 1E-26 172.7 10.3 180 8-215 19-219 (245)
75 TIGR01166 cbiO cobalt transpor 99.9 1.2E-21 2.6E-26 173.7 13.2 160 8-182 9-189 (190)
76 cd03235 ABC_Metallic_Cations A 99.9 7.7E-22 1.7E-26 178.0 12.2 154 8-183 16-195 (213)
77 cd03293 ABC_NrtD_SsuB_transpor 99.9 2E-21 4.4E-26 176.2 14.8 153 8-182 21-194 (220)
78 cd03296 ABC_CysA_sulfate_impor 99.9 1.4E-21 3.1E-26 179.4 13.7 171 8-206 19-214 (239)
79 cd03256 ABC_PhnC_transporter A 99.9 1.5E-21 3.3E-26 179.3 13.7 176 8-206 18-222 (241)
80 COG4598 HisP ABC-type histidin 99.9 2.2E-21 4.7E-26 165.8 13.5 178 8-207 23-230 (256)
81 COG4619 ABC-type uncharacteriz 99.9 2E-22 4.4E-27 170.2 7.1 158 8-182 20-196 (223)
82 TIGR02142 modC_ABC molybdenum 99.9 1.6E-21 3.4E-26 189.2 14.3 176 9-207 15-210 (354)
83 cd03301 ABC_MalK_N The N-termi 99.9 2E-21 4.4E-26 175.2 13.9 156 8-182 17-193 (213)
84 cd03292 ABC_FtsE_transporter F 99.9 1.7E-21 3.7E-26 175.8 13.4 162 8-183 18-199 (214)
85 cd01900 YchF YchF subfamily. 99.9 3.6E-23 7.8E-28 192.5 2.4 203 22-236 1-244 (274)
86 PRK10908 cell division protein 99.9 2E-21 4.3E-26 176.5 13.7 162 8-183 19-200 (222)
87 PRK11607 potG putrescine trans 99.9 1.7E-21 3.7E-26 189.9 14.2 173 8-208 36-229 (377)
88 TIGR01288 nodI ATP-binding ABC 99.9 1.7E-21 3.7E-26 185.2 13.8 174 8-208 21-214 (303)
89 cd03265 ABC_DrrA DrrA is the A 99.9 1.8E-21 3.8E-26 176.6 13.1 158 8-183 17-195 (220)
90 PRK15079 oligopeptide ABC tran 99.9 1.5E-21 3.3E-26 187.4 13.4 178 8-208 38-241 (331)
91 TIGR03608 L_ocin_972_ABC putat 99.9 1.1E-21 2.4E-26 175.9 11.7 163 8-183 15-197 (206)
92 PRK09473 oppD oligopeptide tra 99.9 1.6E-21 3.4E-26 187.3 13.4 182 8-208 33-241 (330)
93 PRK11022 dppD dipeptide transp 99.9 1.8E-21 3.8E-26 186.7 13.6 183 8-208 24-233 (326)
94 TIGR03522 GldA_ABC_ATP gliding 99.9 2E-21 4.3E-26 184.5 13.9 182 8-216 19-219 (301)
95 TIGR03415 ABC_choXWV_ATP choli 99.9 1E-21 2.2E-26 191.1 12.1 163 8-183 41-228 (382)
96 cd03263 ABC_subfamily_A The AB 99.9 1.7E-21 3.6E-26 176.7 12.7 158 8-183 19-195 (220)
97 cd03262 ABC_HisP_GlnQ_permease 99.9 3.3E-21 7.2E-26 173.8 14.4 161 8-183 17-198 (213)
98 COG1160 Predicted GTPases [Gen 99.9 5.1E-22 1.1E-26 191.8 9.5 204 19-295 178-425 (444)
99 PRK11144 modC molybdate transp 99.9 2.1E-21 4.6E-26 188.1 13.9 173 9-207 16-207 (352)
100 cd03264 ABC_drug_resistance_li 99.9 2E-21 4.4E-26 175.0 12.7 157 8-183 17-192 (211)
101 PRK09536 btuD corrinoid ABC tr 99.9 1.4E-21 3.1E-26 191.5 12.4 173 8-206 20-216 (402)
102 cd03297 ABC_ModC_molybdenum_tr 99.9 3.7E-21 8.1E-26 173.7 14.3 160 9-183 16-195 (214)
103 PRK13641 cbiO cobalt transport 99.9 3E-21 6.5E-26 182.2 14.1 176 8-205 24-221 (287)
104 cd03298 ABC_ThiQ_thiamine_tran 99.9 3.8E-21 8.3E-26 173.2 14.0 157 8-183 15-192 (211)
105 cd03258 ABC_MetN_methionine_tr 99.9 3E-21 6.6E-26 176.5 13.5 161 8-182 22-203 (233)
106 PRK11308 dppF dipeptide transp 99.9 2.8E-21 6.1E-26 185.3 13.6 178 8-208 32-234 (327)
107 cd03218 ABC_YhbG The ABC trans 99.9 5E-21 1.1E-25 174.9 14.2 159 8-182 17-195 (232)
108 cd03266 ABC_NatA_sodium_export 99.9 4.2E-21 9.1E-26 173.8 13.5 157 8-182 22-198 (218)
109 TIGR01184 ntrCD nitrate transp 99.9 5.6E-21 1.2E-25 174.6 14.4 169 8-207 2-193 (230)
110 PRK11264 putative amino-acid A 99.9 6.1E-21 1.3E-25 176.3 14.6 178 8-207 20-222 (250)
111 COG4525 TauB ABC-type taurine 99.9 7.1E-21 1.5E-25 164.6 13.8 157 8-186 22-199 (259)
112 PRK15093 antimicrobial peptide 99.9 3.6E-21 7.7E-26 185.0 13.3 183 8-208 24-238 (330)
113 PRK11248 tauB taurine transpor 99.9 5.1E-21 1.1E-25 177.6 13.9 154 8-183 18-192 (255)
114 cd03268 ABC_BcrA_bacitracin_re 99.9 3.6E-21 7.7E-26 173.1 12.4 155 8-183 17-189 (208)
115 COG4604 CeuD ABC-type enteroch 99.9 1.4E-21 3E-26 169.2 9.3 177 8-207 18-214 (252)
116 PRK13643 cbiO cobalt transport 99.9 4.7E-21 1E-25 180.9 13.6 177 8-207 23-222 (288)
117 PRK13650 cbiO cobalt transport 99.9 3.1E-21 6.7E-26 181.3 12.4 173 8-207 24-218 (279)
118 PRK11831 putative ABC transpor 99.9 4.9E-21 1.1E-25 179.1 13.6 161 8-182 24-206 (269)
119 TIGR00436 era GTP-binding prot 99.9 1.8E-21 4E-26 182.0 10.7 155 21-246 2-165 (270)
120 cd03224 ABC_TM1139_LivF_branch 99.9 4.1E-21 8.8E-26 174.3 12.6 159 8-182 17-194 (222)
121 PRK13634 cbiO cobalt transport 99.9 4.4E-21 9.6E-26 181.2 13.3 175 8-205 24-222 (290)
122 TIGR03864 PQQ_ABC_ATP ABC tran 99.9 6.8E-21 1.5E-25 174.6 13.9 159 8-184 18-197 (236)
123 cd03269 ABC_putative_ATPase Th 99.9 4.9E-21 1.1E-25 172.4 12.6 154 8-182 17-190 (210)
124 PRK11247 ssuB aliphatic sulfon 99.9 6.1E-21 1.3E-25 177.2 13.6 149 8-182 29-196 (257)
125 TIGR03411 urea_trans_UrtD urea 99.9 6.9E-21 1.5E-25 175.1 13.6 160 8-183 19-205 (242)
126 PRK13647 cbiO cobalt transport 99.9 6.1E-21 1.3E-25 178.9 13.4 174 8-207 22-216 (274)
127 PRK13651 cobalt transporter AT 99.9 5.7E-21 1.2E-25 181.5 13.1 178 8-207 24-243 (305)
128 COG1123 ATPase components of v 99.9 5.7E-21 1.2E-25 189.7 13.5 192 8-217 26-243 (539)
129 PRK13637 cbiO cobalt transport 99.8 7.3E-21 1.6E-25 179.5 13.6 176 8-207 24-223 (287)
130 cd03257 ABC_NikE_OppD_transpor 99.8 1.1E-20 2.3E-25 172.2 13.8 162 8-183 22-209 (228)
131 PRK13644 cbiO cobalt transport 99.8 6.2E-21 1.4E-25 178.8 12.6 175 8-208 19-214 (274)
132 PRK10247 putative ABC transpor 99.8 6E-21 1.3E-25 173.8 12.1 159 8-183 24-201 (225)
133 cd03260 ABC_PstB_phosphate_tra 99.8 7.8E-21 1.7E-25 173.1 12.8 160 8-182 17-202 (227)
134 COG4559 ABC-type hemin transpo 99.8 6.5E-21 1.4E-25 166.9 11.5 174 8-207 18-219 (259)
135 PRK13649 cbiO cobalt transport 99.8 1E-20 2.3E-25 177.8 13.9 162 8-182 24-207 (280)
136 COG4608 AppF ABC-type oligopep 99.8 5.8E-21 1.3E-25 174.2 11.6 152 8-217 30-198 (268)
137 PRK13646 cbiO cobalt transport 99.8 8.5E-21 1.8E-25 179.0 13.1 176 8-206 24-223 (286)
138 PRK13652 cbiO cobalt transport 99.8 1E-20 2.3E-25 177.6 13.6 173 8-207 21-216 (277)
139 PRK11300 livG leucine/isoleuci 99.8 9.8E-21 2.1E-25 175.5 13.2 160 8-183 22-217 (255)
140 TIGR00972 3a0107s01c2 phosphat 99.8 1.4E-20 3.1E-25 173.7 14.1 180 8-206 18-220 (247)
141 PRK13538 cytochrome c biogenes 99.8 7.5E-21 1.6E-25 170.6 11.6 159 8-185 18-194 (204)
142 TIGR02769 nickel_nikE nickel i 99.8 1.2E-20 2.6E-25 176.1 13.4 177 8-207 28-229 (265)
143 PRK13638 cbiO cobalt transport 99.8 1.7E-20 3.7E-25 175.5 14.5 161 8-183 18-199 (271)
144 PRK11124 artP arginine transpo 99.8 1.4E-20 3.1E-25 173.1 13.8 163 8-183 19-204 (242)
145 PRK09493 glnQ glutamine ABC tr 99.8 1.5E-20 3.3E-25 172.6 13.9 161 8-183 18-199 (240)
146 cd03295 ABC_OpuCA_Osmoprotecti 99.8 1.3E-20 2.7E-25 173.5 13.2 173 8-206 18-213 (242)
147 PRK13635 cbiO cobalt transport 99.8 7E-21 1.5E-25 178.9 11.8 172 8-206 24-217 (279)
148 PRK10771 thiQ thiamine transpo 99.8 1.3E-20 2.9E-25 172.3 13.2 157 8-183 16-193 (232)
149 COG1123 ATPase components of v 99.8 1.4E-20 3E-25 186.9 14.2 179 8-210 308-511 (539)
150 TIGR03156 GTP_HflX GTP-binding 99.8 1.8E-21 3.9E-26 188.0 7.7 160 18-243 188-350 (351)
151 PRK10895 lipopolysaccharide AB 99.8 1.4E-20 3E-25 173.1 13.1 158 8-181 20-198 (241)
152 TIGR03005 ectoine_ehuA ectoine 99.8 1.7E-20 3.7E-25 173.7 13.7 178 8-207 17-225 (252)
153 PRK13632 cbiO cobalt transport 99.8 1.3E-20 2.9E-25 176.3 13.1 159 8-183 26-206 (271)
154 PRK14247 phosphate ABC transpo 99.8 2E-20 4.4E-25 172.9 14.1 164 8-183 20-208 (250)
155 PRK14273 phosphate ABC transpo 99.8 2.7E-20 5.9E-25 172.5 14.9 181 8-207 24-227 (254)
156 PRK14242 phosphate transporter 99.8 2.7E-20 5.9E-25 172.3 14.9 166 8-183 23-211 (253)
157 PRK10575 iron-hydroxamate tran 99.8 1.7E-20 3.8E-25 174.9 13.7 159 8-183 28-211 (265)
158 PRK10253 iron-enterobactin tra 99.8 1.9E-20 4.2E-25 174.7 13.7 158 8-182 24-206 (265)
159 PRK11614 livF leucine/isoleuci 99.8 1.2E-20 2.6E-25 173.0 12.1 174 8-207 22-215 (237)
160 COG4988 CydD ABC-type transpor 99.8 1.2E-20 2.5E-25 187.0 12.7 184 2-216 330-541 (559)
161 PRK10619 histidine/lysine/argi 99.8 2.3E-20 5E-25 173.3 14.0 178 8-207 22-230 (257)
162 cd03267 ABC_NatA_like Similar 99.8 2.9E-20 6.3E-25 170.5 14.5 157 8-182 38-216 (236)
163 cd03231 ABC_CcmA_heme_exporter 99.8 1.8E-20 3.9E-25 167.7 12.7 152 8-181 17-186 (201)
164 COG2262 HflX GTPases [General 99.8 3.7E-21 8.1E-26 183.3 8.4 163 18-246 191-357 (411)
165 PRK13648 cbiO cobalt transport 99.8 1.7E-20 3.7E-25 175.4 12.8 173 8-207 26-220 (269)
166 PRK13636 cbiO cobalt transport 99.8 2E-20 4.3E-25 176.2 13.3 176 8-207 23-220 (283)
167 TIGR01189 ccmA heme ABC export 99.8 1.8E-20 4E-25 167.2 12.4 153 8-180 17-187 (198)
168 PRK13540 cytochrome c biogenes 99.8 9E-21 1.9E-25 169.6 10.3 159 8-187 18-194 (200)
169 TIGR01277 thiQ thiamine ABC tr 99.8 3.8E-20 8.3E-25 167.0 14.3 156 8-182 15-191 (213)
170 COG3845 ABC-type uncharacteriz 99.8 2.7E-20 5.9E-25 180.7 14.0 166 8-189 21-210 (501)
171 TIGR01978 sufC FeS assembly AT 99.8 3.1E-20 6.8E-25 170.7 13.8 160 8-183 17-207 (243)
172 TIGR03873 F420-0_ABC_ATP propo 99.8 2.7E-20 5.9E-25 172.7 13.5 173 8-206 18-214 (256)
173 PRK13633 cobalt transporter AT 99.8 2.4E-20 5.2E-25 175.4 13.2 173 8-206 27-221 (280)
174 PRK14267 phosphate ABC transpo 99.8 2.5E-20 5.4E-25 172.6 13.1 178 8-206 21-225 (253)
175 PRK13543 cytochrome c biogenes 99.8 2.6E-20 5.6E-25 168.4 12.9 155 8-183 28-200 (214)
176 cd03220 ABC_KpsT_Wzt ABC_KpsT_ 99.8 3.8E-20 8.2E-25 168.5 13.8 149 8-182 39-204 (224)
177 cd03245 ABCC_bacteriocin_expor 99.8 7.3E-21 1.6E-25 172.4 9.0 157 8-183 21-202 (220)
178 PRK11701 phnK phosphonate C-P 99.8 2.4E-20 5.3E-25 173.2 12.6 178 8-207 23-230 (258)
179 PRK13631 cbiO cobalt transport 99.8 2.8E-20 6.2E-25 177.9 13.4 178 8-208 43-255 (320)
180 TIGR02982 heterocyst_DevA ABC 99.8 3.4E-20 7.4E-25 168.2 13.2 161 8-182 22-204 (220)
181 PRK11231 fecE iron-dicitrate t 99.8 3.5E-20 7.7E-25 171.8 13.5 158 8-182 19-200 (255)
182 PRK09984 phosphonate/organopho 99.8 3.8E-20 8.2E-25 172.3 13.7 165 8-182 21-215 (262)
183 PRK10762 D-ribose transporter 99.8 2.5E-20 5.4E-25 188.9 13.5 160 8-183 21-204 (501)
184 PRK13639 cbiO cobalt transport 99.8 3.7E-20 7.9E-25 173.7 13.5 175 8-206 19-214 (275)
185 PRK14250 phosphate ABC transpo 99.8 2.2E-20 4.7E-25 171.9 11.6 156 8-182 20-194 (241)
186 PRK15112 antimicrobial peptide 99.8 4.9E-20 1.1E-24 172.1 14.2 172 8-205 30-226 (267)
187 COG4152 ABC-type uncharacteriz 99.8 2.9E-20 6.2E-25 165.9 11.8 162 8-189 19-200 (300)
188 TIGR02324 CP_lyasePhnL phospho 99.8 1.9E-20 4.1E-25 170.3 10.9 163 8-183 25-212 (224)
189 PRK13539 cytochrome c biogenes 99.8 2.8E-20 6E-25 167.3 11.8 154 8-183 19-190 (207)
190 TIGR02323 CP_lyasePhnK phospho 99.8 3.5E-20 7.6E-25 171.6 12.8 163 8-183 20-212 (253)
191 TIGR03410 urea_trans_UrtE urea 99.8 2.8E-20 6E-25 169.8 11.9 159 8-183 17-195 (230)
192 PRK13642 cbiO cobalt transport 99.8 3.3E-20 7E-25 174.2 12.6 173 8-207 24-218 (277)
193 PRK13640 cbiO cobalt transport 99.8 2.9E-20 6.3E-25 175.0 12.3 172 8-206 24-220 (282)
194 PRK15439 autoinducer 2 ABC tra 99.8 3.3E-20 7.1E-25 188.4 13.5 158 8-183 28-203 (510)
195 PRK13548 hmuV hemin importer A 99.8 5.2E-20 1.1E-24 171.1 13.7 173 8-206 19-218 (258)
196 PRK09700 D-allose transporter 99.8 3.7E-20 8E-25 188.1 13.2 160 8-183 22-208 (510)
197 PRK13541 cytochrome c biogenes 99.8 2E-20 4.4E-25 166.6 9.9 155 9-187 18-190 (195)
198 PRK10261 glutathione transport 99.8 3.3E-20 7.2E-25 192.4 13.0 177 8-207 341-542 (623)
199 PRK13645 cbiO cobalt transport 99.8 6E-20 1.3E-24 173.4 13.6 161 8-182 28-213 (289)
200 KOG1191 Mitochondrial GTPase [ 99.8 2.8E-21 6.2E-26 186.7 4.4 209 19-295 268-494 (531)
201 PRK13549 xylose transporter AT 99.8 5.5E-20 1.2E-24 186.6 14.0 162 8-183 22-206 (506)
202 PRK10261 glutathione transport 99.8 5E-20 1.1E-24 191.0 13.9 179 8-208 33-248 (623)
203 COG1129 MglA ABC-type sugar tr 99.8 4.7E-20 1E-24 182.0 12.9 165 8-188 25-214 (500)
204 PRK14268 phosphate ABC transpo 99.8 8.4E-20 1.8E-24 169.7 13.9 181 8-207 29-231 (258)
205 cd01898 Obg Obg subfamily. Th 99.8 1.6E-20 3.4E-25 162.3 8.4 161 21-244 2-170 (170)
206 PRK14259 phosphate ABC transpo 99.8 8.6E-20 1.9E-24 170.6 13.9 176 8-204 30-228 (269)
207 cd03214 ABC_Iron-Siderophores_ 99.8 3E-20 6.5E-25 163.5 10.2 130 8-183 16-161 (180)
208 PRK15134 microcin C ABC transp 99.8 6.2E-20 1.4E-24 187.2 14.1 168 8-183 26-220 (529)
209 PRK14241 phosphate transporter 99.8 8.5E-20 1.8E-24 169.6 13.7 178 8-204 21-222 (258)
210 PRK11288 araG L-arabinose tran 99.8 6.3E-20 1.4E-24 186.0 13.8 160 8-183 21-203 (501)
211 cd03300 ABC_PotA_N PotA is an 99.8 1.1E-19 2.3E-24 166.3 14.0 156 8-182 17-193 (232)
212 COG4674 Uncharacterized ABC-ty 99.8 4.3E-20 9.2E-25 159.8 10.5 193 8-225 22-242 (249)
213 cd03254 ABCC_Glucan_exporter_l 99.8 4.1E-20 8.8E-25 168.5 11.1 171 8-207 20-215 (229)
214 PRK10982 galactose/methyl gala 99.8 6.2E-20 1.3E-24 185.6 13.3 160 8-183 15-197 (491)
215 PRK14269 phosphate ABC transpo 99.8 1.1E-19 2.4E-24 167.7 13.8 177 8-207 19-219 (246)
216 PRK10744 pstB phosphate transp 99.8 1.3E-19 2.8E-24 168.6 14.0 165 8-182 30-217 (260)
217 cd03237 ABC_RNaseL_inhibitor_d 99.8 8.5E-20 1.8E-24 168.5 12.7 150 8-183 11-179 (246)
218 PRK14248 phosphate ABC transpo 99.8 1.5E-19 3.3E-24 168.9 14.4 181 8-207 38-241 (268)
219 PRK14235 phosphate transporter 99.8 9E-20 1.9E-24 170.3 12.8 166 8-183 36-225 (267)
220 cd03251 ABCC_MsbA MsbA is an e 99.8 5.8E-20 1.3E-24 168.1 11.2 173 8-207 19-214 (234)
221 cd03248 ABCC_TAP TAP, the Tran 99.8 5E-20 1.1E-24 167.7 10.7 159 8-183 31-212 (226)
222 PRK14244 phosphate ABC transpo 99.8 1.4E-19 3.1E-24 167.4 13.7 181 8-207 22-226 (251)
223 TIGR02770 nickel_nikD nickel i 99.8 1.4E-19 3.1E-24 165.2 13.5 176 8-207 3-204 (230)
224 TIGR03740 galliderm_ABC gallid 99.8 1.3E-19 2.9E-24 164.6 13.2 153 8-183 17-187 (223)
225 PRK09700 D-allose transporter 99.8 1.2E-19 2.6E-24 184.4 14.2 160 8-183 280-472 (510)
226 PRK14245 phosphate ABC transpo 99.8 1.7E-19 3.8E-24 166.7 14.1 179 8-207 20-223 (250)
227 TIGR00968 3a0106s01 sulfate AB 99.8 1.5E-19 3.2E-24 165.9 13.3 156 8-182 17-193 (237)
228 PRK14237 phosphate transporter 99.8 2.4E-19 5.2E-24 167.5 14.6 181 8-207 37-240 (267)
229 cd03299 ABC_ModC_like Archeal 99.8 1E-19 2.3E-24 166.7 11.9 156 8-182 16-192 (235)
230 COG0410 LivF ABC-type branched 99.8 7.2E-20 1.6E-24 162.7 10.3 160 8-183 20-200 (237)
231 PRK14274 phosphate ABC transpo 99.8 2E-19 4.3E-24 167.2 13.7 181 8-207 29-232 (259)
232 PRK14256 phosphate ABC transpo 99.8 2.9E-19 6.2E-24 165.4 14.5 163 8-182 21-209 (252)
233 PRK14251 phosphate ABC transpo 99.8 2.9E-19 6.2E-24 165.3 14.4 165 8-182 21-208 (251)
234 PRK09544 znuC high-affinity zi 99.8 1.2E-19 2.7E-24 167.9 11.8 146 8-183 21-184 (251)
235 COG4161 ArtP ABC-type arginine 99.8 1.2E-19 2.7E-24 152.5 10.6 165 8-185 19-206 (242)
236 PRK14254 phosphate ABC transpo 99.8 1.9E-19 4.1E-24 169.7 13.2 166 8-183 56-242 (285)
237 PRK14239 phosphate transporter 99.8 3.1E-19 6.7E-24 165.1 14.2 179 8-207 22-225 (252)
238 TIGR02633 xylG D-xylose ABC tr 99.8 1.8E-19 4E-24 182.6 13.8 162 8-183 18-204 (500)
239 COG4987 CydC ABC-type transpor 99.8 1.4E-19 2.9E-24 177.3 12.2 172 8-210 355-553 (573)
240 PRK15134 microcin C ABC transp 99.8 1.8E-19 4E-24 183.7 13.7 174 8-205 303-502 (529)
241 PRK10762 D-ribose transporter 99.8 2.4E-19 5.1E-24 181.8 14.4 160 8-183 269-458 (501)
242 PRK14275 phosphate ABC transpo 99.8 2.7E-19 5.9E-24 168.7 13.8 179 8-205 56-257 (286)
243 cd03252 ABCC_Hemolysin The ABC 99.8 5.4E-20 1.2E-24 168.6 8.6 159 8-183 19-200 (237)
244 PRK13549 xylose transporter AT 99.8 2.5E-19 5.5E-24 181.8 14.3 161 8-183 279-468 (506)
245 PRK11288 araG L-arabinose tran 99.8 1.7E-19 3.8E-24 182.7 13.0 160 8-183 270-459 (501)
246 PRK13547 hmuV hemin importer A 99.8 3.3E-19 7.1E-24 166.9 13.7 180 8-206 18-232 (272)
247 COG2274 SunT ABC-type bacterio 99.8 1.3E-19 2.7E-24 188.2 11.9 178 8-216 490-694 (709)
248 TIGR03797 NHPM_micro_ABC2 NHPM 99.8 1.2E-19 2.6E-24 190.5 12.0 169 8-208 470-663 (686)
249 PRK10938 putative molybdenum t 99.8 1.6E-19 3.5E-24 182.5 12.5 158 8-182 20-197 (490)
250 PRK14272 phosphate ABC transpo 99.8 4.3E-19 9.3E-24 164.2 14.3 181 8-207 21-225 (252)
251 PRK09580 sufC cysteine desulfu 99.8 3.5E-19 7.5E-24 164.3 13.6 160 8-183 18-208 (248)
252 cd03234 ABCG_White The White s 99.8 4.4E-19 9.5E-24 161.6 14.0 153 8-180 24-203 (226)
253 CHL00131 ycf16 sulfate ABC tra 99.8 4.5E-19 9.7E-24 164.0 14.2 163 8-184 24-215 (252)
254 PRK10419 nikE nickel transport 99.8 3.6E-19 7.8E-24 166.4 13.7 162 8-183 29-215 (268)
255 PRK14270 phosphate ABC transpo 99.8 4E-19 8.8E-24 164.3 13.8 165 8-182 21-208 (251)
256 cd03249 ABC_MTABC3_MDL1_MDL2 M 99.8 1.4E-19 3E-24 166.0 10.6 173 8-207 20-215 (238)
257 PRK11174 cysteine/glutathione 99.8 1.5E-19 3.2E-24 186.7 11.9 169 8-208 367-562 (588)
258 PRK14249 phosphate ABC transpo 99.8 5.5E-19 1.2E-23 163.4 14.5 181 8-207 21-224 (251)
259 PRK11176 lipid transporter ATP 99.8 2E-19 4.2E-24 185.5 12.6 171 8-208 360-557 (582)
260 cd03289 ABCC_CFTR2 The CFTR su 99.8 1.9E-19 4.1E-24 168.6 11.3 170 8-208 21-215 (275)
261 cd03253 ABCC_ATM1_transporter 99.8 2.1E-19 4.4E-24 164.6 11.3 171 8-206 18-212 (236)
262 PRK14240 phosphate transporter 99.8 5.2E-19 1.1E-23 163.5 14.0 165 8-182 20-207 (250)
263 PRK10418 nikD nickel transport 99.8 4.9E-19 1.1E-23 164.1 13.6 176 8-207 20-219 (254)
264 PRK15439 autoinducer 2 ABC tra 99.8 4.9E-19 1.1E-23 179.8 14.8 160 8-183 280-466 (510)
265 cd03290 ABCC_SUR1_N The SUR do 99.8 3.9E-19 8.4E-24 161.0 12.5 157 8-182 18-204 (218)
266 PRK14253 phosphate ABC transpo 99.8 5.4E-19 1.2E-23 163.3 13.7 179 8-206 20-221 (249)
267 cd03244 ABCC_MRP_domain2 Domai 99.8 2.9E-19 6.2E-24 162.1 11.6 155 8-182 21-200 (221)
268 PRK10790 putative multidrug tr 99.8 2.4E-19 5.3E-24 185.2 12.6 169 8-208 358-553 (592)
269 PRK15056 manganese/iron transp 99.8 2.7E-19 5.8E-24 167.6 11.6 155 8-182 24-204 (272)
270 PRK14271 phosphate ABC transpo 99.8 6.4E-19 1.4E-23 165.4 14.0 179 8-207 38-240 (276)
271 TIGR03269 met_CoM_red_A2 methy 99.8 4E-19 8.6E-24 180.9 13.6 163 8-183 17-232 (520)
272 PRK14238 phosphate transporter 99.8 5E-19 1.1E-23 165.6 13.2 181 8-207 41-244 (271)
273 PRK14260 phosphate ABC transpo 99.8 7.6E-19 1.7E-23 163.3 14.3 166 8-183 24-212 (259)
274 TIGR03796 NHPM_micro_ABC1 NHPM 99.8 1.9E-19 4.1E-24 189.8 11.5 170 8-208 496-690 (710)
275 COG1084 Predicted GTPase [Gene 99.8 6.3E-20 1.4E-24 170.2 6.9 158 19-243 168-334 (346)
276 PRK14261 phosphate ABC transpo 99.8 6.6E-19 1.4E-23 163.1 13.8 181 8-207 23-226 (253)
277 PRK14255 phosphate ABC transpo 99.8 9.9E-19 2.1E-23 161.8 14.9 180 8-206 22-224 (252)
278 TIGR02868 CydC thiol reductant 99.8 1.8E-19 3.8E-24 183.9 10.7 151 8-180 352-529 (529)
279 PRK14258 phosphate ABC transpo 99.8 7.4E-19 1.6E-23 163.6 14.0 178 8-204 24-226 (261)
280 PRK03695 vitamin B12-transport 99.8 8.1E-19 1.8E-23 162.1 14.0 157 8-182 13-195 (248)
281 PRK11160 cysteine/glutathione 99.8 3.5E-19 7.7E-24 183.3 12.8 170 8-208 357-552 (574)
282 TIGR02633 xylG D-xylose ABC tr 99.8 6.4E-19 1.4E-23 178.6 14.4 161 8-183 277-466 (500)
283 PRK14262 phosphate ABC transpo 99.8 6.5E-19 1.4E-23 162.8 13.1 165 8-182 20-207 (250)
284 TIGR03269 met_CoM_red_A2 methy 99.8 3.8E-19 8.3E-24 181.0 12.7 163 8-183 301-491 (520)
285 PRK14243 phosphate transporter 99.8 8.1E-19 1.8E-23 163.6 13.8 177 8-203 27-224 (264)
286 PRK14236 phosphate transporter 99.8 1.1E-18 2.3E-23 163.6 14.5 181 8-207 42-245 (272)
287 cd01881 Obg_like The Obg-like 99.8 9.1E-20 2E-24 158.1 6.7 162 24-243 1-175 (176)
288 PRK15494 era GTPase Era; Provi 99.8 1.2E-19 2.5E-24 175.0 8.1 167 8-246 36-217 (339)
289 COG0396 sufC Cysteine desulfur 99.8 5E-19 1.1E-23 157.0 11.4 164 8-185 21-209 (251)
290 PRK14266 phosphate ABC transpo 99.8 1.1E-18 2.3E-23 161.4 13.9 180 8-206 20-222 (250)
291 PRK11058 GTPase HflX; Provisio 99.8 1.2E-19 2.5E-24 179.4 7.8 160 20-245 198-362 (426)
292 COG0370 FeoB Fe2+ transport sy 99.8 1.3E-19 2.7E-24 182.5 7.9 153 20-245 4-164 (653)
293 COG4107 PhnK ABC-type phosphon 99.8 4.2E-19 9E-24 151.1 9.9 172 2-186 16-218 (258)
294 PRK13545 tagH teichoic acids e 99.8 8.8E-19 1.9E-23 174.8 13.8 148 8-182 41-205 (549)
295 COG4172 ABC-type uncharacteriz 99.8 8.3E-19 1.8E-23 166.3 12.9 186 8-211 27-240 (534)
296 cd03369 ABCC_NFT1 Domain 2 of 99.8 6.7E-19 1.4E-23 158.2 11.8 163 8-205 25-199 (207)
297 PRK14246 phosphate ABC transpo 99.8 1.2E-18 2.5E-23 161.9 13.7 159 8-183 27-215 (257)
298 TIGR03375 type_I_sec_LssB type 99.8 4E-19 8.8E-24 186.8 11.8 170 8-208 482-678 (694)
299 PRK14257 phosphate ABC transpo 99.8 1.1E-18 2.3E-23 167.6 13.7 182 8-208 99-303 (329)
300 PRK14265 phosphate ABC transpo 99.8 1.1E-18 2.3E-23 163.7 13.3 177 8-203 37-234 (274)
301 TIGR03771 anch_rpt_ABC anchore 99.8 5.3E-19 1.1E-23 160.8 10.8 149 12-182 1-175 (223)
302 KOG0057 Mitochondrial Fe/S clu 99.8 4.9E-19 1.1E-23 173.5 11.1 159 8-186 369-552 (591)
303 PRK14263 phosphate ABC transpo 99.8 1.5E-18 3.2E-23 161.7 13.9 165 8-182 25-210 (261)
304 TIGR01257 rim_protein retinal- 99.8 7.1E-19 1.5E-23 198.0 13.9 174 8-208 947-1139(2272)
305 PRK15064 ABC transporter ATP-b 99.8 7.8E-19 1.7E-23 179.2 12.8 150 8-183 336-498 (530)
306 PRK13546 teichoic acids export 99.8 1.9E-18 4.1E-23 161.1 14.3 148 8-182 41-205 (264)
307 PRK15177 Vi polysaccharide exp 99.8 1E-18 2.2E-23 157.9 11.8 161 8-205 4-179 (213)
308 PRK14252 phosphate ABC transpo 99.8 1.7E-18 3.6E-23 161.6 13.4 180 8-205 33-236 (265)
309 COG4586 ABC-type uncharacteriz 99.8 5.6E-19 1.2E-23 160.0 9.7 180 8-217 41-245 (325)
310 PRK11819 putative ABC transpor 99.8 1.3E-18 2.8E-23 178.5 13.2 148 8-184 24-224 (556)
311 TIGR00958 3a01208 Conjugate Tr 99.8 6.5E-19 1.4E-23 185.5 11.3 170 8-208 498-692 (711)
312 PRK10636 putative ABC transpor 99.8 1.4E-18 3.1E-23 180.6 13.6 148 8-183 329-490 (638)
313 TIGR01187 potA spermidine/putr 99.8 1.4E-18 2.9E-23 166.8 12.4 158 24-207 1-179 (325)
314 TIGR01193 bacteriocin_ABC ABC- 99.8 9.5E-19 2.1E-23 184.4 12.2 169 8-206 491-685 (708)
315 PRK15064 ABC transporter ATP-b 99.8 1.4E-18 3E-23 177.3 12.8 149 8-183 18-215 (530)
316 TIGR02203 MsbA_lipidA lipid A 99.8 4E-19 8.6E-24 182.8 8.9 157 8-184 349-532 (571)
317 cd03230 ABC_DR_subfamily_A Thi 99.8 1.7E-18 3.7E-23 151.3 11.6 129 8-183 17-158 (173)
318 PRK10982 galactose/methyl gala 99.8 1.7E-18 3.6E-23 175.2 13.1 160 8-183 265-454 (491)
319 cd03236 ABC_RNaseL_inhibitor_d 99.8 1.4E-18 3.1E-23 161.0 11.6 157 8-183 18-202 (255)
320 PRK14264 phosphate ABC transpo 99.8 2.2E-18 4.8E-23 164.0 13.0 165 8-182 62-261 (305)
321 PRK05291 trmE tRNA modificatio 99.8 2.5E-19 5.4E-24 178.7 6.6 187 19-287 215-403 (449)
322 COG4148 ModC ABC-type molybdat 99.8 6E-19 1.3E-23 160.3 8.3 155 9-182 16-191 (352)
323 PRK13409 putative ATPase RIL; 99.8 1.1E-18 2.4E-23 179.4 11.2 147 8-184 356-518 (590)
324 TIGR02857 CydD thiol reductant 99.8 5.5E-19 1.2E-23 180.2 8.7 155 8-183 339-520 (529)
325 PRK10636 putative ABC transpor 99.8 1.2E-18 2.5E-23 181.2 11.1 160 8-183 18-209 (638)
326 cd03229 ABC_Class3 This class 99.8 1.4E-18 3E-23 152.6 9.9 133 8-183 17-164 (178)
327 KOG0055 Multidrug/pheromone ex 99.8 1.1E-18 2.5E-23 185.2 10.7 179 8-217 370-575 (1228)
328 PRK13657 cyclic beta-1,2-gluca 99.8 1.3E-18 2.9E-23 179.6 11.1 169 8-207 352-547 (588)
329 TIGR01192 chvA glucan exporter 99.8 2.5E-18 5.4E-23 177.4 13.0 170 8-208 352-548 (585)
330 cd03228 ABCC_MRP_Like The MRP 99.8 1E-18 2.2E-23 152.5 8.6 128 8-183 19-158 (171)
331 COG1132 MdlB ABC-type multidru 99.8 2.1E-18 4.6E-23 177.4 12.4 178 8-216 346-550 (567)
332 cd03246 ABCC_Protease_Secretio 99.8 1.6E-18 3.5E-23 151.5 9.8 127 8-182 19-158 (173)
333 cd04938 TGS_Obg-like TGS_Obg-l 99.8 1.3E-18 2.8E-23 130.7 7.8 69 246-323 1-76 (76)
334 KOG0058 Peptide exporter, ABC 99.8 1.4E-18 3E-23 175.6 10.5 178 8-216 485-689 (716)
335 TIGR01257 rim_protein retinal- 99.8 2.3E-18 4.9E-23 193.9 13.1 174 8-208 1956-2149(2272)
336 PRK10522 multidrug transporter 99.8 4.1E-18 8.9E-23 174.5 13.5 165 8-205 340-525 (547)
337 TIGR03719 ABC_ABC_ChvD ATP-bin 99.8 4.4E-18 9.5E-23 174.4 13.5 147 8-183 22-221 (552)
338 cd03216 ABC_Carb_Monos_I This 99.8 2.7E-18 5.8E-23 148.7 10.1 115 8-182 17-144 (163)
339 cd03223 ABCD_peroxisomal_ALDP 99.8 2.8E-18 6.1E-23 149.0 10.2 121 8-182 18-150 (166)
340 COG4172 ABC-type uncharacteriz 99.8 4.5E-18 9.7E-23 161.4 12.3 186 8-217 304-515 (534)
341 COG4778 PhnL ABC-type phosphon 99.8 2.7E-18 5.9E-23 145.6 9.7 163 8-183 28-215 (235)
342 PLN03211 ABC transporter G-25; 99.8 9.6E-18 2.1E-22 174.5 15.9 156 8-182 85-268 (659)
343 cd03215 ABC_Carb_Monos_II This 99.8 4.5E-18 9.8E-23 149.9 11.4 133 8-181 17-165 (182)
344 PRK10789 putative multidrug tr 99.8 3.1E-18 6.7E-23 176.2 12.0 170 8-208 332-528 (569)
345 TIGR01842 type_I_sec_PrtD type 99.8 4E-18 8.7E-23 174.5 12.7 172 8-206 335-530 (544)
346 TIGR03719 ABC_ABC_ChvD ATP-bin 99.8 3.2E-18 7E-23 175.4 12.0 152 8-183 339-503 (552)
347 PLN03073 ABC transporter F fam 99.8 3.8E-18 8.2E-23 178.6 12.7 147 8-183 526-687 (718)
348 TIGR02204 MsbA_rel ABC transpo 99.8 3.4E-18 7.5E-23 176.1 12.0 167 8-205 357-550 (576)
349 PRK11819 putative ABC transpor 99.8 4.3E-18 9.2E-23 174.6 12.5 152 8-183 341-505 (556)
350 cd03288 ABCC_SUR2 The SUR doma 99.8 3.7E-18 8.1E-23 158.5 11.0 169 8-205 38-230 (257)
351 TIGR01194 cyc_pep_trnsptr cycl 99.8 4.7E-18 1E-22 174.3 12.7 166 8-205 359-546 (555)
352 TIGR01846 type_I_sec_HlyB type 99.8 5E-18 1.1E-22 178.5 13.2 170 8-208 474-670 (694)
353 PRK11147 ABC transporter ATPas 99.8 4.2E-18 9.1E-23 177.2 12.5 159 8-183 20-216 (635)
354 cd03217 ABC_FeS_Assembly ABC-t 99.8 2.6E-18 5.6E-23 153.7 9.0 136 8-183 17-167 (200)
355 cd03247 ABCC_cytochrome_bd The 99.8 1.6E-18 3.4E-23 152.2 7.4 130 8-183 19-160 (178)
356 PRK11147 ABC transporter ATPas 99.7 5.3E-18 1.1E-22 176.4 12.2 152 8-183 336-500 (635)
357 COG4133 CcmA ABC-type transpor 99.7 5.2E-18 1.1E-22 146.2 10.0 156 8-180 19-190 (209)
358 PRK10535 macrolide transporter 99.7 6.2E-18 1.3E-22 176.2 12.0 168 8-188 25-212 (648)
359 PRK00089 era GTPase Era; Revie 99.7 2.2E-18 4.8E-23 162.9 7.6 156 20-245 6-171 (292)
360 cd03250 ABCC_MRP_domain1 Domai 99.7 6.4E-18 1.4E-22 151.5 9.8 146 8-183 22-191 (204)
361 cd03233 ABC_PDR_domain1 The pl 99.7 7.4E-18 1.6E-22 151.0 10.1 138 8-179 24-178 (202)
362 PRK10938 putative molybdenum t 99.7 5.9E-18 1.3E-22 171.2 10.3 161 8-183 277-465 (490)
363 COG1119 ModF ABC-type molybden 99.7 4.9E-18 1.1E-22 152.3 8.5 157 8-181 48-234 (257)
364 PTZ00265 multidrug resistance 99.7 5.2E-18 1.1E-22 189.4 10.7 178 8-205 1185-1434(1466)
365 TIGR00450 mnmE_trmE_thdF tRNA 99.7 2.8E-18 6.1E-23 170.5 7.5 189 19-286 203-395 (442)
366 PLN03232 ABC transporter C fam 99.7 8.1E-18 1.8E-22 189.0 12.0 179 8-216 1253-1456(1495)
367 PRK13409 putative ATPase RIL; 99.7 7E-18 1.5E-22 173.5 9.9 154 8-184 91-275 (590)
368 cd03238 ABC_UvrA The excision 99.7 1.2E-17 2.6E-22 146.3 9.8 122 8-182 12-151 (176)
369 cd01897 NOG NOG1 is a nucleola 99.7 9.1E-18 2E-22 144.8 8.9 57 21-77 2-58 (168)
370 COG0488 Uup ATPase components 99.7 1.6E-17 3.5E-22 167.4 12.1 170 8-190 20-221 (530)
371 cd03213 ABCG_EPDR ABCG transpo 99.7 1.1E-17 2.4E-22 148.9 9.7 132 8-181 26-172 (194)
372 COG1134 TagH ABC-type polysacc 99.7 3.9E-17 8.4E-22 146.6 13.0 166 8-208 44-226 (249)
373 PLN03130 ABC transporter C fam 99.7 1.5E-17 3.2E-22 187.4 12.8 171 8-208 1256-1451(1622)
374 cd03232 ABC_PDR_domain2 The pl 99.7 1.1E-17 2.4E-22 148.7 9.3 130 8-181 24-169 (192)
375 COG0488 Uup ATPase components 99.7 2E-17 4.4E-22 166.7 11.8 147 8-184 339-500 (530)
376 cd03221 ABCF_EF-3 ABCF_EF-3 E 99.7 1.9E-17 4.2E-22 140.4 9.1 104 8-183 17-130 (144)
377 cd03222 ABC_RNaseL_inhibitor T 99.7 1.7E-17 3.6E-22 145.4 8.8 103 11-183 19-135 (177)
378 TIGR00957 MRP_assoc_pro multi 99.7 2.6E-17 5.6E-22 185.2 12.5 171 8-208 1303-1498(1522)
379 cd01878 HflX HflX subfamily. 99.7 1.3E-17 2.8E-22 149.2 8.1 160 19-244 41-204 (204)
380 TIGR00954 3a01203 Peroxysomal 99.7 1.7E-17 3.8E-22 173.1 9.8 149 8-184 469-643 (659)
381 PTZ00243 ABC transporter; Prov 99.7 2.9E-17 6.3E-22 184.7 12.2 179 8-216 1327-1531(1560)
382 cd03291 ABCC_CFTR1 The CFTR su 99.7 3.3E-17 7.1E-22 154.1 10.5 145 8-183 54-222 (282)
383 COG1101 PhnK ABC-type uncharac 99.7 3.6E-17 7.9E-22 143.7 9.5 157 8-181 23-210 (263)
384 COG4136 ABC-type uncharacteriz 99.7 2.4E-17 5.2E-22 137.3 7.8 157 9-181 20-196 (213)
385 TIGR00955 3a01204 The Eye Pigm 99.7 1E-16 2.2E-21 166.3 13.8 157 8-181 42-227 (617)
386 PRK09554 feoB ferrous iron tra 99.7 3.6E-17 7.8E-22 171.9 10.2 153 20-244 4-167 (772)
387 PRK00093 GTP-binding protein D 99.7 3.1E-17 6.8E-22 163.4 8.7 204 19-295 173-418 (435)
388 PRK03003 GTP-binding protein D 99.7 4.5E-17 9.7E-22 163.8 9.3 157 19-245 211-382 (472)
389 TIGR03594 GTPase_EngA ribosome 99.7 4.5E-17 9.7E-22 162.0 8.8 203 20-295 173-418 (429)
390 TIGR03594 GTPase_EngA ribosome 99.7 2.6E-17 5.7E-22 163.6 7.1 155 21-245 1-160 (429)
391 TIGR00956 3a01205 Pleiotropic 99.7 3E-16 6.4E-21 175.1 16.0 157 8-182 780-964 (1394)
392 cd01879 FeoB Ferrous iron tran 99.7 2.8E-17 6.1E-22 139.9 6.2 148 24-244 1-156 (158)
393 cd04164 trmE TrmE (MnmE, ThdF, 99.7 2.6E-17 5.5E-22 139.5 5.7 154 19-244 1-156 (157)
394 KOG0055 Multidrug/pheromone ex 99.7 1.1E-16 2.4E-21 170.3 11.6 180 8-218 1007-1213(1228)
395 TIGR01271 CFTR_protein cystic 99.7 1.2E-16 2.5E-21 179.6 12.0 170 8-208 1236-1430(1490)
396 PLN03073 ABC transporter F fam 99.7 7.5E-17 1.6E-21 168.9 9.8 165 8-182 194-403 (718)
397 PTZ00265 multidrug resistance 99.7 1.1E-16 2.3E-21 179.0 11.5 170 8-204 402-654 (1466)
398 cd01894 EngA1 EngA1 subfamily. 99.7 4.1E-17 9E-22 138.4 5.2 151 23-243 1-156 (157)
399 PRK03003 GTP-binding protein D 99.7 6.5E-17 1.4E-21 162.7 7.0 155 20-245 39-199 (472)
400 COG4138 BtuD ABC-type cobalami 99.7 4.2E-16 9E-21 133.0 10.6 152 8-181 16-193 (248)
401 PLN03140 ABC transporter G fam 99.7 5.7E-16 1.2E-20 172.7 14.8 157 8-182 897-1081(1470)
402 cd00267 ABC_ATPase ABC (ATP-bi 99.7 3E-16 6.5E-21 134.8 9.8 116 8-184 16-144 (157)
403 COG4167 SapF ABC-type antimicr 99.7 7.5E-16 1.6E-20 132.3 12.0 180 8-213 30-234 (267)
404 KOG1423 Ras-like GTPase ERA [C 99.7 1.6E-16 3.5E-21 145.8 8.1 60 20-79 73-133 (379)
405 COG4618 ArpD ABC-type protease 99.7 3.3E-16 7.1E-21 152.6 10.5 158 8-186 353-538 (580)
406 PRK09518 bifunctional cytidyla 99.7 1.4E-16 3.1E-21 167.4 8.6 157 19-245 450-621 (712)
407 TIGR00956 3a01205 Pleiotropic 99.7 8.4E-16 1.8E-20 171.5 14.6 160 8-181 78-271 (1394)
408 PRK00093 GTP-binding protein D 99.7 1.2E-16 2.5E-21 159.3 6.9 155 20-244 2-161 (435)
409 PLN03140 ABC transporter G fam 99.6 1.9E-15 4.1E-20 168.6 15.8 157 8-181 182-398 (1470)
410 PF00005 ABC_tran: ABC transpo 99.6 1.6E-16 3.4E-21 133.0 5.1 121 8-153 2-137 (137)
411 PRK09518 bifunctional cytidyla 99.6 1.9E-16 4.2E-21 166.5 6.8 156 19-245 275-436 (712)
412 cd04171 SelB SelB subfamily. 99.6 4.2E-16 9.2E-21 133.3 7.8 82 20-108 1-86 (164)
413 cd01895 EngA2 EngA2 subfamily. 99.6 9.6E-16 2.1E-20 131.8 8.1 59 20-78 3-62 (174)
414 KOG0056 Heavy metal exporter H 99.6 5.2E-16 1.1E-20 150.2 6.9 180 8-216 555-759 (790)
415 COG0218 Predicted GTPase [Gene 99.6 5.2E-16 1.1E-20 135.8 5.6 58 16-76 21-80 (200)
416 KOG0059 Lipid exporter ABCA1 a 99.6 2.6E-15 5.7E-20 161.1 11.9 165 8-188 582-767 (885)
417 TIGR00437 feoB ferrous iron tr 99.6 6.4E-16 1.4E-20 158.8 6.4 147 26-244 1-154 (591)
418 KOG0927 Predicted transporter 99.6 2.1E-15 4.6E-20 147.8 9.2 147 9-183 408-569 (614)
419 cd04163 Era Era subfamily. Er 99.6 1.2E-15 2.6E-20 129.9 6.4 58 20-77 4-62 (168)
420 cd03278 ABC_SMC_barmotin Barmo 99.6 4.3E-16 9.3E-21 139.1 3.8 151 8-184 14-180 (197)
421 cd03270 ABC_UvrA_I The excisio 99.6 3.3E-15 7.1E-20 136.2 9.4 66 117-182 118-201 (226)
422 PF01926 MMR_HSR1: 50S ribosom 99.6 3.3E-16 7.1E-21 127.5 2.1 59 21-79 1-60 (116)
423 cd04160 Arfrp1 Arfrp1 subfamil 99.6 1.7E-15 3.8E-20 130.4 6.6 82 21-109 1-86 (167)
424 KOG0061 Transporter, ABC super 99.6 1.1E-14 2.3E-19 150.4 13.4 164 8-188 47-240 (613)
425 PRK04213 GTP-binding protein; 99.6 2.5E-15 5.4E-20 134.0 7.5 54 19-76 9-62 (201)
426 TIGR00231 small_GTP small GTP- 99.6 6.5E-15 1.4E-19 123.7 8.9 57 20-76 2-60 (161)
427 TIGR01271 CFTR_protein cystic 99.6 6.8E-15 1.5E-19 165.4 11.6 157 8-205 443-623 (1490)
428 cd01861 Rab6 Rab6 subfamily. 99.6 9E-15 2E-19 125.0 8.9 151 21-244 2-161 (161)
429 KOG0054 Multidrug resistance-a 99.6 6.6E-15 1.4E-19 160.0 9.8 183 8-220 1157-1364(1381)
430 TIGR00957 MRP_assoc_pro multi 99.6 1.5E-14 3.2E-19 163.2 12.5 158 8-207 655-839 (1522)
431 PLN03130 ABC transporter C fam 99.5 1.5E-14 3.2E-19 163.4 11.4 155 8-207 634-817 (1622)
432 PRK00454 engB GTP-binding prot 99.5 6.5E-15 1.4E-19 130.4 6.7 56 19-77 24-81 (196)
433 PLN03232 ABC transporter C fam 99.5 1.2E-14 2.7E-19 163.5 10.0 155 8-207 634-817 (1495)
434 PTZ00243 ABC transporter; Prov 99.5 2.4E-14 5.2E-19 161.4 12.1 159 8-207 677-859 (1560)
435 cd00880 Era_like Era (E. coli 99.5 7.9E-15 1.7E-19 123.2 6.0 150 24-243 1-162 (163)
436 cd00879 Sar1 Sar1 subfamily. 99.5 1.8E-14 3.9E-19 127.1 8.3 80 20-109 20-99 (190)
437 cd01887 IF2_eIF5B IF2/eIF5B (i 99.5 2.2E-14 4.9E-19 123.3 7.9 81 21-108 2-85 (168)
438 cd01889 SelB_euk SelB subfamil 99.5 1.2E-14 2.7E-19 128.8 6.2 81 21-108 2-103 (192)
439 cd04142 RRP22 RRP22 subfamily. 99.5 5.7E-14 1.2E-18 125.5 9.9 161 21-244 2-173 (198)
440 TIGR03598 GTPase_YsxC ribosome 99.5 1.1E-14 2.4E-19 127.6 5.1 56 19-77 18-75 (179)
441 cd01868 Rab11_like Rab11-like. 99.5 6.5E-14 1.4E-18 120.4 9.2 152 20-244 4-164 (165)
442 cd04155 Arl3 Arl3 subfamily. 99.5 3.8E-14 8.1E-19 122.9 7.7 76 19-108 14-93 (173)
443 cd00881 GTP_translation_factor 99.5 3.5E-14 7.7E-19 124.2 7.3 81 21-108 1-97 (189)
444 cd04159 Arl10_like Arl10-like 99.5 4E-14 8.6E-19 119.6 7.4 78 22-108 2-79 (159)
445 PRK15467 ethanolamine utilizat 99.5 2.3E-14 4.9E-19 123.4 5.8 139 21-245 3-147 (158)
446 smart00178 SAR Sar1p-like memb 99.5 7.1E-14 1.5E-18 123.2 9.0 81 19-109 17-97 (184)
447 cd04157 Arl6 Arl6 subfamily. 99.5 3.8E-14 8.2E-19 121.1 7.0 81 21-109 1-81 (162)
448 cd04151 Arl1 Arl1 subfamily. 99.5 5.2E-14 1.1E-18 120.4 7.5 79 21-109 1-79 (158)
449 cd04158 ARD1 ARD1 subfamily. 99.5 6.7E-14 1.4E-18 121.4 8.0 149 21-244 1-160 (169)
450 cd01876 YihA_EngB The YihA (En 99.5 3.4E-14 7.4E-19 121.3 5.6 53 22-77 2-56 (170)
451 cd03271 ABC_UvrA_II The excisi 99.5 1.5E-13 3.3E-18 127.5 9.8 71 114-184 147-236 (261)
452 cd04145 M_R_Ras_like M-Ras/R-R 99.5 1.9E-13 4.1E-18 117.1 9.4 152 20-244 3-163 (164)
453 cd01869 Rab1_Ypt1 Rab1/Ypt1 su 99.5 1.7E-13 3.8E-18 118.0 9.0 152 20-244 3-163 (166)
454 KOG0066 eIF2-interacting prote 99.5 1.5E-13 3.3E-18 131.8 9.2 160 8-204 604-777 (807)
455 KOG0054 Multidrug resistance-a 99.5 2.2E-13 4.8E-18 148.3 11.6 164 8-216 538-729 (1381)
456 cd04153 Arl5_Arl8 Arl5/Arl8 su 99.5 1.3E-13 2.8E-18 120.3 7.7 81 19-109 15-95 (174)
457 cd04166 CysN_ATPS CysN_ATPS su 99.5 3.9E-14 8.4E-19 127.5 4.3 82 21-109 1-113 (208)
458 smart00175 RAB Rab subfamily o 99.5 2.4E-13 5.2E-18 116.3 9.0 151 21-244 2-161 (164)
459 cd01867 Rab8_Rab10_Rab13_like 99.5 2.4E-13 5.1E-18 117.5 8.8 152 20-244 4-164 (167)
460 cd01862 Rab7 Rab7 subfamily. 99.5 3E-13 6.5E-18 116.7 9.4 155 21-244 2-166 (172)
461 cd04112 Rab26 Rab26 subfamily. 99.4 2.7E-13 5.8E-18 120.1 9.1 153 21-246 2-164 (191)
462 cd04154 Arl2 Arl2 subfamily. 99.4 1.6E-13 3.4E-18 119.4 7.2 147 20-241 15-171 (173)
463 cd01866 Rab2 Rab2 subfamily. 99.4 3.3E-13 7.1E-18 116.8 9.1 152 20-244 5-165 (168)
464 cd01863 Rab18 Rab18 subfamily. 99.4 5E-13 1.1E-17 114.3 10.1 151 21-243 2-160 (161)
465 cd04109 Rab28 Rab28 subfamily. 99.4 3.7E-13 8.1E-18 121.6 9.5 155 21-245 2-166 (215)
466 cd01865 Rab3 Rab3 subfamily. 99.4 3.7E-13 8.1E-18 116.0 9.0 151 21-244 3-162 (165)
467 cd01864 Rab19 Rab19 subfamily. 99.4 2.9E-13 6.3E-18 116.5 8.3 151 20-243 4-164 (165)
468 cd01669 TGS_Ygr210_C TGS_Ygr21 99.4 2.3E-13 4.9E-18 102.1 6.5 57 259-323 20-76 (76)
469 cd01852 AIG1 AIG1 (avrRpt2-ind 99.4 1.7E-13 3.6E-18 122.1 6.6 58 21-78 2-61 (196)
470 PF00009 GTP_EFTU: Elongation 99.4 1.5E-13 3.3E-18 121.5 6.2 148 20-244 4-186 (188)
471 cd04119 RJL RJL (RabJ-Like) su 99.4 4.5E-13 9.7E-18 114.8 8.9 156 21-244 2-166 (168)
472 cd01892 Miro2 Miro2 subfamily. 99.4 6.1E-13 1.3E-17 115.6 9.8 150 20-244 5-165 (169)
473 cd00876 Ras Ras family. The R 99.4 3.2E-13 6.9E-18 114.8 7.8 150 21-243 1-159 (160)
474 cd04114 Rab30 Rab30 subfamily. 99.4 3E-13 6.6E-18 116.6 7.7 151 20-243 8-167 (169)
475 cd04138 H_N_K_Ras_like H-Ras/N 99.4 4.4E-13 9.5E-18 114.2 8.5 152 20-244 2-161 (162)
476 cd00154 Rab Rab family. Rab G 99.4 4.3E-13 9.4E-18 113.1 8.4 148 21-241 2-158 (159)
477 cd01890 LepA LepA subfamily. 99.4 2.8E-13 6E-18 118.1 7.4 147 21-244 2-176 (179)
478 KOG0410 Predicted GTP binding 99.4 2.1E-14 4.5E-19 132.9 0.1 160 19-245 178-341 (410)
479 KOG0065 Pleiotropic drug resis 99.4 2.3E-12 4.9E-17 138.0 15.4 164 8-189 808-1001(1391)
480 cd00878 Arf_Arl Arf (ADP-ribos 99.4 5.1E-13 1.1E-17 114.0 7.9 79 21-109 1-79 (158)
481 cd04149 Arf6 Arf6 subfamily. 99.4 4.3E-13 9.3E-18 116.5 7.4 81 19-109 9-89 (168)
482 smart00174 RHO Rho (Ras homolo 99.4 7.6E-13 1.6E-17 114.7 8.8 80 22-109 1-82 (174)
483 cd04139 RalA_RalB RalA/RalB su 99.4 9.9E-13 2.1E-17 112.3 9.4 55 21-76 2-58 (164)
484 smart00173 RAS Ras subfamily o 99.4 7E-13 1.5E-17 113.7 8.5 151 21-244 2-161 (164)
485 cd04144 Ras2 Ras2 subfamily. 99.4 7E-13 1.5E-17 117.3 8.6 154 21-245 1-163 (190)
486 cd04150 Arf1_5_like Arf1-Arf5- 99.4 5E-13 1.1E-17 114.9 7.5 79 21-109 2-80 (159)
487 PF10662 PduV-EutP: Ethanolami 99.4 2.5E-13 5.3E-18 113.9 5.2 133 21-241 3-142 (143)
488 cd04156 ARLTS1 ARLTS1 subfamil 99.4 5E-13 1.1E-17 114.2 7.1 79 21-109 1-80 (160)
489 cd04136 Rap_like Rap-like subf 99.4 1E-12 2.2E-17 112.4 9.1 152 20-244 2-162 (163)
490 cd04175 Rap1 Rap1 subgroup. T 99.4 9.5E-13 2.1E-17 113.1 8.6 152 20-244 2-162 (164)
491 cd04152 Arl4_Arl7 Arl4/Arl7 su 99.4 1E-12 2.2E-17 115.7 8.9 152 20-244 4-169 (183)
492 cd04118 Rab24 Rab24 subfamily. 99.4 1.3E-12 2.9E-17 115.5 9.7 150 21-244 2-165 (193)
493 cd04124 RabL2 RabL2 subfamily. 99.4 1.6E-12 3.5E-17 111.7 9.8 149 21-244 2-157 (161)
494 COG4615 PvdE ABC-type sideroph 99.4 1.2E-12 2.6E-17 124.4 9.5 158 8-189 340-518 (546)
495 cd00157 Rho Rho (Ras homology) 99.4 9.3E-13 2E-17 113.5 8.0 81 21-109 2-84 (171)
496 cd04147 Ras_dva Ras-dva subfam 99.4 9.3E-13 2E-17 117.4 8.2 154 21-247 1-165 (198)
497 cd04146 RERG_RasL11_like RERG/ 99.4 1.4E-12 3E-17 112.2 8.8 153 21-244 1-163 (165)
498 cd04107 Rab32_Rab38 Rab38/Rab3 99.4 2E-12 4.4E-17 115.4 10.1 155 21-244 2-167 (201)
499 TIGR02528 EutP ethanolamine ut 99.4 2E-13 4.4E-18 114.5 3.4 45 196-240 89-140 (142)
500 cd04106 Rab23_lke Rab23-like s 99.4 1.4E-12 3.1E-17 111.4 8.5 148 21-242 2-160 (162)
No 1
>COG1163 DRG Predicted GTPase [General function prediction only]
Probab=100.00 E-value=7.4e-78 Score=551.31 Aligned_cols=317 Identities=57% Similarity=0.980 Sum_probs=307.0
Q ss_pred CCCCCCCeEEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCccccccccccccceEEEECCEeecccCccccccccccCc
Q 018394 5 SSGAGEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGK 84 (356)
Q Consensus 5 ~~~~~~s~~v~~~~g~~v~LvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~~D~pGl~~~~~~~~ 84 (356)
+++++.+|+|.++|..+|+|||+|++|||||||+||+..+.+++|||||+.|.+|++.++|.+||++|+||++.+++.+.
T Consensus 49 ~gggg~gf~V~KsGda~v~lVGfPsvGKStLL~~LTnt~seva~y~FTTl~~VPG~l~Y~ga~IQild~Pgii~gas~g~ 128 (365)
T COG1163 49 SGGGGSGFAVKKSGDATVALVGFPSVGKSTLLNKLTNTKSEVADYPFTTLEPVPGMLEYKGAQIQLLDLPGIIEGASSGR 128 (365)
T ss_pred CCCCCCcceEeccCCeEEEEEcCCCccHHHHHHHHhCCCccccccCceecccccceEeecCceEEEEcCcccccCcccCC
Confidence 34444999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccccccccchhHHHHHHhcCChHHHHHHHHHHHHHccCccccccCcccccceeccceeeeecCCCCCCCHHHHHHHH
Q 018394 85 GRGRQVIAVSKSSDIVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQIL 164 (356)
Q Consensus 85 ~~~~~~~~~~~~~d~i~~v~d~~~~~~~~~~i~~~L~~~~i~l~~~~~~lS~g~~qr~~ial~~DEp~~~LD~~~~~~il 164 (356)
++++|+++.+++||++++|+|........+.++.+|+..||++++.++.+....+.+.||.+....|++++|++.++.+|
T Consensus 129 grG~~vlsv~R~ADlIiiVld~~~~~~~~~~i~~ELe~~GIrlnk~~p~V~I~kk~~gGI~i~~t~~l~~~d~~~ir~iL 208 (365)
T COG1163 129 GRGRQVLSVARNADLIIIVLDVFEDPHHRDIIERELEDVGIRLNKRPPDVTIKKKESGGIRINGTGPLTHLDEDTVRAIL 208 (365)
T ss_pred CCcceeeeeeccCCEEEEEEecCCChhHHHHHHHHHHhcCeEecCCCCceEEEEeccCCEEEecccccccCCHHHHHHHH
Confidence 99999999999999999999998776668899999999999999999999999999999999999999999999999999
Q ss_pred HHhcccCcEEEEccCCCHHHHHHHHhccccccceEEEeecCCCCChhhHHHHhcCCCEEEeccccccchHHHHHHHHHHh
Q 018394 165 HEYKIHNAEVLFREDATVDDLIDVIEGNRKYMKCVYVYNKIDVIGIDDVDKLARQPNSVVISCNLKLNLDRLLARMWEEM 244 (356)
Q Consensus 165 ~~l~~~~~~i~~thd~~~~~~~~~i~~~~~~~p~i~v~NK~Dl~~~~~~~~l~~~~~~i~iSa~~~~~l~~L~~~i~~~l 244 (356)
++|+++++.+.+..|+++++++|.+.+++.|+|+++|+||+|+++.++++.+.+.++.+++||+.++|+++|++.||+.|
T Consensus 209 ~Ey~I~nA~V~Ir~dvTlDd~id~l~~nrvY~p~l~v~NKiD~~~~e~~~~l~~~~~~v~isa~~~~nld~L~e~i~~~L 288 (365)
T COG1163 209 REYRIHNADVLIREDVTLDDLIDALEGNRVYKPALYVVNKIDLPGLEELERLARKPNSVPISAKKGINLDELKERIWDVL 288 (365)
T ss_pred HHhCcccceEEEecCCcHHHHHHHHhhcceeeeeEEEEecccccCHHHHHHHHhccceEEEecccCCCHHHHHHHHHHhh
Confidence 99999999999999999999999999999999999999999999988899998888999999999999999999999999
Q ss_pred CceEEEeCCCCCCCCCCccEEeecCCCCCCHHHHHHHHHHhHhhcCcEeEEeccCCccCCcccCCCceeCCCCeEEEEec
Q 018394 245 GLVRVYTKPQGQQPDFTEPVVLSVDRGGCTVEDFCNHIHRSLVKDVKYVLVWGTSARHYPQHCGLGHVLQDEDVVQIVKK 324 (356)
Q Consensus 245 ~~i~~~~~~~~~~p~~~~~~~~~~~r~g~~v~~~a~~ih~~l~~~f~~a~~wg~s~~~~~~~vg~~~~l~d~Dvv~i~~~ 324 (356)
+++|+|||++|..|++++|+++++ |+||.|+|++||++|.++|+||+|||+|+||+|||||.||+|+|||||+||++
T Consensus 289 ~liRVYtK~~g~~pd~~~PlIlr~---GsTV~Dvc~~IH~~l~~~FryA~VWGkSvk~~~QrVG~dHvLeD~DIV~I~~k 365 (365)
T COG1163 289 GLIRVYTKPPGEEPDFDEPLILRR---GSTVGDVCRKIHRDLVENFRYARVWGKSVKHPGQRVGLDHVLEDEDIVEIHAK 365 (365)
T ss_pred CeEEEEecCCCCCCCCCCCeEEeC---CCcHHHHHHHHHHHHHHhcceEEEeccCCCCCccccCcCcCccCCCeEEEeeC
Confidence 999999999999999999999999 99999999999999999999999999999999999999999999999999974
No 2
>KOG1486 consensus GTP-binding protein DRG2 (ODN superfamily) [Signal transduction mechanisms]
Probab=100.00 E-value=2.2e-68 Score=471.94 Aligned_cols=317 Identities=77% Similarity=1.228 Sum_probs=309.0
Q ss_pred CCCCCCCeEEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCccccccccccccceEEEECCEeecccCccccccccccCc
Q 018394 5 SSGAGEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGK 84 (356)
Q Consensus 5 ~~~~~~s~~v~~~~g~~v~LvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~~D~pGl~~~~~~~~ 84 (356)
+++++..|+|.++|..+|++||.|.+||||||..||...+..++|.|||+.+.+|.+.++|..|+++|.||++++++++.
T Consensus 48 s~~kg~GFeV~KsGdaRValIGfPSVGKStlLs~iT~T~SeaA~yeFTTLtcIpGvi~y~ga~IQllDLPGIieGAsqgk 127 (364)
T KOG1486|consen 48 SSGKGEGFEVLKSGDARVALIGFPSVGKSTLLSKITSTHSEAASYEFTTLTCIPGVIHYNGANIQLLDLPGIIEGASQGK 127 (364)
T ss_pred CCCCCCCeeeeccCCeEEEEecCCCccHHHHHHHhhcchhhhhceeeeEEEeecceEEecCceEEEecCcccccccccCC
Confidence 34588999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccccccccchhHHHHHHhcCChHHHHHHHHHHHHHccCccccccCcccccceeccceeeeecCCCCCCCHHHHHHHH
Q 018394 85 GRGRQVIAVSKSSDIVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQIL 164 (356)
Q Consensus 85 ~~~~~~~~~~~~~d~i~~v~d~~~~~~~~~~i~~~L~~~~i~l~~~~~~lS~g~~qr~~ial~~DEp~~~LD~~~~~~il 164 (356)
|+++|..+..+.||++++|+|+.....+.+.++.+|+.+||++++++++++..++...||.+....|++.+|++.+..+|
T Consensus 128 GRGRQviavArtaDlilMvLDatk~e~qr~~le~ELe~vGiRLNk~~Pniy~k~kk~gGi~f~~T~~lT~~~ek~i~~IL 207 (364)
T KOG1486|consen 128 GRGRQVIAVARTADLILMVLDATKSEDQREILEKELEAVGIRLNKRKPNIYFKKKKTGGISFNTTVPLTHCDEKLIYTIL 207 (364)
T ss_pred CCCceEEEEeecccEEEEEecCCcchhHHHHHHHHHHHhceeccCCCCCeEEEeeccCCeEEeeeeccccccHHHHHHHH
Confidence 99999999999999999999999888888899999999999999999999999999999999999999999999999999
Q ss_pred HHhcccCcEEEEccCCCHHHHHHHHhccccccceEEEeecCCCCChhhHHHHhcCCCEEEeccccccchHHHHHHHHHHh
Q 018394 165 HEYKIHNAEVLFREDATVDDLIDVIEGNRKYMKCVYVYNKIDVIGIDDVDKLARQPNSVVISCNLKLNLDRLLARMWEEM 244 (356)
Q Consensus 165 ~~l~~~~~~i~~thd~~~~~~~~~i~~~~~~~p~i~v~NK~Dl~~~~~~~~l~~~~~~i~iSa~~~~~l~~L~~~i~~~l 244 (356)
++|++.++.+++..|.+.+|++|.+.+++.|.+|++|+||+|.++.++++++.+.|+.+.+||...+|++.|++.||+.|
T Consensus 208 heykI~Naevl~ReD~t~DdfIDvi~gnr~Y~~ClYvYnKID~vs~eevdrlAr~PnsvViSC~m~lnld~lle~iWe~l 287 (364)
T KOG1486|consen 208 HEYKIHNAEVLFREDCTVDDFIDVIEGNRVYIKCLYVYNKIDQVSIEEVDRLARQPNSVVISCNMKLNLDRLLERIWEEL 287 (364)
T ss_pred HHHeeccceEEEecCCChHHHHHHHhccceEEEEEEEeeccceecHHHHHHHhcCCCcEEEEeccccCHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CceEEEeCCCCCCCCCCccEEeecCCCCCCHHHHHHHHHHhHhhcCcEeEEeccCCccCCcccCCCceeCCCCeEEEEec
Q 018394 245 GLVRVYTKPQGQQPDFTEPVVLSVDRGGCTVEDFCNHIHRSLVKDVKYVLVWGTSARHYPQHCGLGHVLQDEDVVQIVKK 324 (356)
Q Consensus 245 ~~i~~~~~~~~~~p~~~~~~~~~~~r~g~~v~~~a~~ih~~l~~~f~~a~~wg~s~~~~~~~vg~~~~l~d~Dvv~i~~~ 324 (356)
++.|+|||++|..|++.+|++++. |+|++++|..||++|+..|+||.|||.|+||+|||||..|.++|+|||+|+.+
T Consensus 288 ~L~rvYtKk~g~~Pdfdd~~vlr~---g~tve~~C~~iHr~l~~qfkyAlVWGtSakhsPQrvgl~h~~~dEdvvqi~~k 364 (364)
T KOG1486|consen 288 NLVRVYTKKKGQRPDFDDPLVLRK---GSTVEDVCHRIHRTLAAQFKYALVWGTSAKHSPQRVGLGHTLEDEDVVQIVKK 364 (364)
T ss_pred ceEEEEecCCCCCCCCCCceEEeC---CCcHHHHHHHHHHHHHHhhceeeEeccccccCcceeccccccccccceeeecC
Confidence 999999999999999999999998 99999999999999999999999999999999999999999999999999864
No 3
>KOG1487 consensus GTP-binding protein DRG1 (ODN superfamily) [Signal transduction mechanisms]
Probab=100.00 E-value=3.4e-59 Score=415.06 Aligned_cols=312 Identities=59% Similarity=0.999 Sum_probs=297.3
Q ss_pred CCCCCeEEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCccccccccccccceEEEECCEeecccCccccccccccCccc
Q 018394 7 GAGEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGR 86 (356)
Q Consensus 7 ~~~~s~~v~~~~g~~v~LvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~~D~pGl~~~~~~~~~~ 86 (356)
+.+-.|+|.+.+..+++++|.|.+|||||+.-|+|..++|+.|.|||....+|.+.++|..+++.|.||+++++..+.|+
T Consensus 47 g~~~gfDV~ktg~a~vg~vgFPSvGksTl~~~l~g~~s~vasyefttl~~vpG~~~y~gaKiqlldlpgiiegakdgkgr 126 (358)
T KOG1487|consen 47 GGGGGFDVAKTGDARVGFVGFPSVGKSTLLSKLTGTFSEVAAYEFTTLTTVPGVIRYKGAKIQLLDLPGIIEGAKDGKGR 126 (358)
T ss_pred CCCCCccceeecceeeeEEecCccchhhhhhhhcCCCCccccccceeEEEecceEeccccceeeecCcchhcccccCCCC
Confidence 33449999999888999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccccccchhHHHHHHhcCChHHHHHHHHHHHHHccCccccccCcccccceeccceeeeecCCCCCCCHHHHHHHHHH
Q 018394 87 GRQVIAVSKSSDIVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHE 166 (356)
Q Consensus 87 ~~~~~~~~~~~d~i~~v~d~~~~~~~~~~i~~~L~~~~i~l~~~~~~lS~g~~qr~~ial~~DEp~~~LD~~~~~~il~~ 166 (356)
++|.++..+.|.++++++|...+......++.+|+-+||++++.|+++-...+++.||.+.. +.||.+.++.++.+
T Consensus 127 g~qviavartcnli~~vld~~kp~~hk~~ie~eleg~girlnk~pp~i~~kkKdkgGInlt~----~~LdlD~~rsil~e 202 (358)
T KOG1487|consen 127 GKQVIAVARTCNLIFIVLDVLKPLSHKKIIEKELEGFGIRLNKQPPNIGTKKKDKGGINLTG----THLDLDLQRSILSE 202 (358)
T ss_pred ccEEEEEeecccEEEEEeeccCcccHHHHHHHhhhcceeeccCCCCCccccccccCceeeec----chhhHHHHHHHHHH
Confidence 99999999999999999999999888899999999999999999999999999999999776 67999999999999
Q ss_pred hcccCcEEEEccCCCHHHHHHHHhccccccceEEEeecCCCCChhhHHHHhcCCCEEEeccccccchHHHHHHHHHHhCc
Q 018394 167 YKIHNAEVLFREDATVDDLIDVIEGNRKYMKCVYVYNKIDVIGIDDVDKLARQPNSVVISCNLKLNLDRLLARMWEEMGL 246 (356)
Q Consensus 167 l~~~~~~i~~thd~~~~~~~~~i~~~~~~~p~i~v~NK~Dl~~~~~~~~l~~~~~~i~iSa~~~~~l~~L~~~i~~~l~~ 246 (356)
++.+++.+-.+-|.+.+++++.+++++.|.|+++++||+|-++.++++-+...+..+|+||.+++++|+|++.+|+.|++
T Consensus 203 yR~hsAdi~Lr~DaT~DdLIdvVegnr~yVp~iyvLNkIdsISiEELdii~~iphavpISA~~~wn~d~lL~~mweyL~L 282 (358)
T KOG1487|consen 203 YRIHSADIALRFDATADDLIDVVEGNRIYVPCIYVLNKIDSISIEELDIIYTIPHAVPISAHTGWNFDKLLEKMWEYLKL 282 (358)
T ss_pred hhhcchheeeecCcchhhhhhhhccCceeeeeeeeecccceeeeeccceeeeccceeecccccccchHHHHHHHhhcchh
Confidence 99999999999999999999999999999999999999999988888877777889999999999999999999999999
Q ss_pred eEEEeCCCCCCCCCCccEEeecCCCCCCHHHHHHHHHHhHhhcCcEeEEeccCCccCCcccCCCceeCCCCeEEEEec
Q 018394 247 VRVYTKPQGQQPDFTEPVVLSVDRGGCTVEDFCNHIHRSLVKDVKYVLVWGTSARHYPQHCGLGHVLQDEDVVQIVKK 324 (356)
Q Consensus 247 i~~~~~~~~~~p~~~~~~~~~~~r~g~~v~~~a~~ih~~l~~~f~~a~~wg~s~~~~~~~vg~~~~l~d~Dvv~i~~~ 324 (356)
.|+||++.|..||+..|.+++.. ..+++|+|..||+++.+.|+||.|||+|+||+||+||++|+|+|+|||+||++
T Consensus 283 vriYtkPKgq~PDy~~pVvLs~~--~~sv~dfc~~ih~~~~~~fk~alvwg~s~kh~pq~vg~~h~l~dedvv~ivkk 358 (358)
T KOG1487|consen 283 VRIYTKPKGQPPDYTSPVVLSSE--RRSVEDFCNKIHKSILKQFKYALVWGSSVKHNPQRVGKEHVLEDEDVVQIVKK 358 (358)
T ss_pred eEEecCCCCCCCCCCCCceecCC--cccHHHHHHHHHHHHHHhhhhheEeccccCcChhhcchhheeccchhhhhccC
Confidence 99999999999999999999884 57999999999999999999999999999999999999999999999999874
No 4
>PTZ00258 GTP-binding protein; Provisional
Probab=100.00 E-value=3.5e-43 Score=339.71 Aligned_cols=289 Identities=21% Similarity=0.269 Sum_probs=216.8
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHcCCCCccccccccccccceEEEECC-----------------EeecccCccccccccc
Q 018394 19 HGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYND-----------------TKIQLLDLPGIIEGAS 81 (356)
Q Consensus 19 g~~v~LvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g-----------------~~i~~~D~pGl~~~~~ 81 (356)
+..|||||.||||||||||+|++..+.+++|||||++|+.|.+.+.+ .++.++|+||++.+++
T Consensus 21 ~~kvgIVG~PNvGKSTLfnaLt~~~~~v~n~pftTi~p~~g~v~~~d~r~~~l~~~~~~~~~~~aqi~lvDtpGLv~ga~ 100 (390)
T PTZ00258 21 NLKMGIVGLPNVGKSTTFNALCKQQVPAENFPFCTIDPNTARVNVPDERFDWLCKHFKPKSIVPAQLDITDIAGLVKGAS 100 (390)
T ss_pred CcEEEEECCCCCChHHHHHHHhcCcccccCCCCCcccceEEEEecccchhhHHHHHcCCcccCCCCeEEEECCCcCcCCc
Confidence 57999999999999999999999999999999999999999998763 3588999999998888
Q ss_pred cCccccccccccccchhHHHHHHhcC------------ChHHHHHHHHHHHHHccC-ccccccCcccccce-eccceeee
Q 018394 82 EGKGRGRQVIAVSKSSDIVLMVLDAS------------KSEGHRQILTKELEAVGL-RLNKRPPQIYFKKK-KTGGISFN 147 (356)
Q Consensus 82 ~~~~~~~~~~~~~~~~d~i~~v~d~~------------~~~~~~~~i~~~L~~~~i-~l~~~~~~lS~g~~-qr~~ial~ 147 (356)
.+.+++++++..++++|++++|+|++ ++.++.+.+..+|...++ .+.+++..++...+ ++..
T Consensus 101 ~g~gLg~~fL~~Ir~aD~il~VVd~f~d~~v~h~~~~~dp~~d~~~i~~EL~~~d~~~~ek~~~~~~k~~~~~~~~---- 176 (390)
T PTZ00258 101 EGEGLGNAFLSHIRAVDGIYHVVRAFEDEDITHVEGEIDPVRDLEIISSELILKDLEFVEKRLDELTKKRKKKKKK---- 176 (390)
T ss_pred chhHHHHHHHHHHHHCCEEEEEEeCCCCCCccccCCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhccccch----
Confidence 88888899999999999999999874 356677888889988887 45555544432110 0000
Q ss_pred ecCCCCCCCHHHHHHHHHHhcccCcEEEEccCCCHHHHHHHHh-ccccccceEEEeecC--CCC--ChhhHHHHhc----
Q 018394 148 STLPLTHVDEKLCYQILHEYKIHNAEVLFREDATVDDLIDVIE-GNRKYMKCVYVYNKI--DVI--GIDDVDKLAR---- 218 (356)
Q Consensus 148 ~DEp~~~LD~~~~~~il~~l~~~~~~i~~thd~~~~~~~~~i~-~~~~~~p~i~v~NK~--Dl~--~~~~~~~l~~---- 218 (356)
+...--...+.++.+.+..+. .....+|+.++....-. ....+||+++|+|+. |+. ..+.++.+..
T Consensus 177 ---~~~~~~~~~l~~v~~~L~~~~--~~~~~~~~~~e~~~l~~l~llt~KP~iyv~N~~E~D~~~~~~~~~~~l~~~~~~ 251 (390)
T PTZ00258 177 ---KEEKVELDVLKKVLEWLEEGK--PVRDGDWTDKEIEILNEYQLLTAKPMIYLVNMSEKDFIRQKNKWLAKIKEWVGE 251 (390)
T ss_pred ---hhHHHHHHHHHHHHHHHHcCC--ccccCCCCHHHHHHHHHhchhhcCCEEEEEECchhhhcccchHHHHHHHHHHHh
Confidence 000000011222222222211 11123566655432211 134579999999999 862 3333444432
Q ss_pred --CCCEEEecccccc-----------------------chHHHHHHHHHHhCceEEEeCCCCCCCCCCccEEeecCCCCC
Q 018394 219 --QPNSVVISCNLKL-----------------------NLDRLLARMWEEMGLVRVYTKPQGQQPDFTEPVVLSVDRGGC 273 (356)
Q Consensus 219 --~~~~i~iSa~~~~-----------------------~l~~L~~~i~~~l~~i~~~~~~~~~~p~~~~~~~~~~~r~g~ 273 (356)
...++++||+.+. |++.|.+..++.|+++++||.. |++.++|++++ |+
T Consensus 252 ~~~~~~v~~sa~~E~el~~l~~~~e~~~fl~~~g~~~~gl~~li~~~~~lL~li~ffT~g----~~e~raw~i~~---Gs 324 (390)
T PTZ00258 252 KGGGPIIPYSAEFEEELAELGSEEERKEYLEEYGIKQSMLDKIIKTGYKLLNLIHFFTAG----PDEVRCWTIQK---GT 324 (390)
T ss_pred cCCCeEEEeeHHHHHHHHhcCCHHHHHHHHHHcCCCcccHHHHHHHHHHHhCCEEEEcCC----CCceeEEEeCC---CC
Confidence 2358999987775 7899999999999999999986 57889999999 99
Q ss_pred CHHHHHHHHHHhHhhcCcEeEEeccC----------CccCC--cccCCCceeCCCCeEEEEe
Q 018394 274 TVEDFCNHIHRSLVKDVKYVLVWGTS----------ARHYP--QHCGLGHVLQDEDVVQIVK 323 (356)
Q Consensus 274 ~v~~~a~~ih~~l~~~f~~a~~wg~s----------~~~~~--~~vg~~~~l~d~Dvv~i~~ 323 (356)
|+.++|..||+||.++|.||.||+.+ +|..| +++|+||+|+|||||+|--
T Consensus 325 ta~~aAg~IHsD~~kgFi~Aev~~~~d~~~~g~~~~ak~~g~~r~eGkdYiv~DGDIi~f~f 386 (390)
T PTZ00258 325 KAPQAAGVIHSDFEKGFICAEVMKYEDFLELGSEAAVKAEGKYRQEGKDYVVQDGDIIFFKF 386 (390)
T ss_pred cHHHHHhhhhhHHhhCcEEEEECcHHHHHHcCCHHHHHhcCceeeeCCceEecCCCEEEEEe
Confidence 99999999999999999999999977 66667 9999999999999999853
No 5
>PRK09602 translation-associated GTPase; Reviewed
Probab=100.00 E-value=7e-43 Score=340.89 Aligned_cols=292 Identities=25% Similarity=0.338 Sum_probs=224.0
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcCCCCccccccccccccceEEEE---------------------C---CEeecccCccc
Q 018394 20 GRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHY---------------------N---DTKIQLLDLPG 75 (356)
Q Consensus 20 ~~v~LvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~---------------------~---g~~i~~~D~pG 75 (356)
..|+|||.||||||||||+||+....+++|||||++|+.|.+.+ + ..+++++|+||
T Consensus 2 ~kigivG~pnvGKSTlfn~Lt~~~~~~~~y~f~t~~p~~g~~~v~~~~~~~r~~~~~~~~~~~~~~~~~~~~i~i~D~aG 81 (396)
T PRK09602 2 ITIGLVGKPNVGKSTFFNAATLADVEIANYPFTTIDPNVGVAYVRVECPCKELGVKCNPRNGKCIDGTRFIPVELIDVAG 81 (396)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCcccccCCCCcceeeeeeeeeeccCCchhhhhhhhccccccccCCcceeeEEEEEcCC
Confidence 37999999999999999999999988999999999999998763 2 25688999999
Q ss_pred cccccccCccccccccccccchhHHHHHHhcCC---------------hHHHHHHHHHHHHHccC-ccccccCcccccce
Q 018394 76 IIEGASEGKGRGRQVIAVSKSSDIVLMVLDASK---------------SEGHRQILTKELEAVGL-RLNKRPPQIYFKKK 139 (356)
Q Consensus 76 l~~~~~~~~~~~~~~~~~~~~~d~i~~v~d~~~---------------~~~~~~~i~~~L~~~~i-~l~~~~~~lS~g~~ 139 (356)
+..+++.+.+++++++..++++|++++|+|++. +..+.+.+..+|..+++ .+.+++..+... .
T Consensus 82 l~~ga~~g~glg~~fL~~ir~ad~ll~Vvd~~~~~~~~~~~~~~~~~dp~~d~~~i~~EL~~~d~~~~~k~~~~~~~~-~ 160 (396)
T PRK09602 82 LVPGAHEGRGLGNQFLDDLRQADALIHVVDASGSTDEEGNPVEPGSHDPVEDIKFLEEELDMWIYGILEKNWEKFSRK-A 160 (396)
T ss_pred cCCCccchhhHHHHHHHHHHHCCEEEEEEeCCCCcccCCcccCCCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH-H
Confidence 998888888899999999999999999999872 45677888889888755 355555544321 1
Q ss_pred eccc--eeeeecCCCC--CCCHHHHHHHHHHhcccCcEEEEccCCCHHHHHHHHhcccc-ccceEEEeecCCCCC-hhhH
Q 018394 140 KTGG--ISFNSTLPLT--HVDEKLCYQILHEYKIHNAEVLFREDATVDDLIDVIEGNRK-YMKCVYVYNKIDVIG-IDDV 213 (356)
Q Consensus 140 qr~~--ial~~DEp~~--~LD~~~~~~il~~l~~~~~~i~~thd~~~~~~~~~i~~~~~-~~p~i~v~NK~Dl~~-~~~~ 213 (356)
.+.. +...+-+.++ +++...++++|++.+.. + ..-.|+.+++.+....... ++|+|+|+||+|+.. .+.+
T Consensus 161 ~~~~~~~~~~~~~~l~~~~~~e~~v~~~L~~~g~~-~---~~~~~~~~~~~~I~~~~l~t~KPvI~VlNK~D~~~~~~~l 236 (396)
T PRK09602 161 QAEKFDIEEALAEQLSGLGINEEHVKEALRELGLP-E---DPSKWTDEDLLELARELRKISKPMVIAANKADLPPAEENI 236 (396)
T ss_pred hcCCcchHHHHHHHHhhhccCHHHHHHHHHHcCCc-C---cccCCCHHHHHHHHHhhhhcCCCEEEEEEchhcccchHHH
Confidence 1111 1111112233 56777888888876543 1 1224666666555444333 499999999999864 3334
Q ss_pred HHHhc--CCCEEEeccccccchHH------------------------------------------------HHHHHHHH
Q 018394 214 DKLAR--QPNSVVISCNLKLNLDR------------------------------------------------LLARMWEE 243 (356)
Q Consensus 214 ~~l~~--~~~~i~iSa~~~~~l~~------------------------------------------------L~~~i~~~ 243 (356)
..+.. ...++++||..|.++++ +.+++|+.
T Consensus 237 ~~i~~~~~~~vvpISA~~e~~l~~~l~~~i~~~lp~~p~~~~~d~ltd~~~r~~E~IRk~l~~~g~~~~~~~i~~~~~~~ 316 (396)
T PRK09602 237 ERLKEEKYYIVVPTSAEAELALRRAAKAGLIDYIPGDSDFEILGELSEKQKKALEYIREVLKKYGGTGVQEAINTAVFDL 316 (396)
T ss_pred HHHHhcCCCcEEEEcchhhhhHHHHHHHhHHhhCCCCCccCccccCCHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHH
Confidence 44443 35689999999998755 34788999
Q ss_pred hCceEEEeCCCCCC------CCCCccEEeecCCCCCCHHHHHHHHHHhHhhcCcEeEEeccCCccCCcccCCCceeCCCC
Q 018394 244 MGLVRVYTKPQGQQ------PDFTEPVVLSVDRGGCTVEDFCNHIHRSLVKDVKYVLVWGTSARHYPQHCGLGHVLQDED 317 (356)
Q Consensus 244 l~~i~~~~~~~~~~------p~~~~~~~~~~~r~g~~v~~~a~~ih~~l~~~f~~a~~wg~s~~~~~~~vg~~~~l~d~D 317 (356)
|+++++||..+... +++.+||++++ |+|+.|+|..||+||.++|+||..|+ .+|++|+||+|+|||
T Consensus 317 L~li~~yt~~~~~~~~~~~g~~~~~~~~l~~---g~t~~d~A~~IH~d~~~~fi~A~~~~-----~~~~~g~~~~l~dgD 388 (396)
T PRK09602 317 LDMIVVYPVEDENKLTDKKGNVLPDAFLLPK---GSTARDLAYKIHTDIGEGFLYAIDAR-----TKRRIGEDYELKDGD 388 (396)
T ss_pred hCCEEEEecCcccccccccCcccceeEEECC---CCCHHHHHHHHHHHHHhhceehhccc-----CCcccCCCcEecCCC
Confidence 99999999754222 36888999999 99999999999999999999999854 689999999999999
Q ss_pred eEEEEec
Q 018394 318 VVQIVKK 324 (356)
Q Consensus 318 vv~i~~~ 324 (356)
||+|++.
T Consensus 389 iv~i~~~ 395 (396)
T PRK09602 389 VIKIVST 395 (396)
T ss_pred EEEEEeC
Confidence 9999974
No 6
>cd01896 DRG The developmentally regulated GTP-binding protein (DRG) subfamily is an uncharacterized member of the Obg family, an evolutionary branch of GTPase superfamily proteins. GTPases act as molecular switches regulating diverse cellular processes. DRG2 and DRG1 comprise the DRG subfamily in eukaryotes. In view of their widespread expression in various tissues and high conservation among distantly related species in eukaryotes and archaea, DRG proteins may regulate fundamental cellular processes. It is proposed that the DRG subfamily proteins play their physiological roles through RNA binding.
Probab=100.00 E-value=4e-39 Score=294.82 Aligned_cols=232 Identities=70% Similarity=1.136 Sum_probs=214.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCccccccccccccceEEEECCEeecccCccccccccccCccccccccccccchhHH
Q 018394 21 RVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQVIAVSKSSDIV 100 (356)
Q Consensus 21 ~v~LvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~~D~pGl~~~~~~~~~~~~~~~~~~~~~d~i 100 (356)
+++|+|+||||||||||+|+|....+++|||||+++.+|.+.++|.+++++|+||+.+......++..+.+..++++|++
T Consensus 2 ~v~lvG~~~~GKStLl~~Ltg~~~~v~~~~~tT~~~~~g~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~l~~~~~ad~i 81 (233)
T cd01896 2 RVALVGFPSVGKSTLLSKLTNTKSEVAAYEFTTLTCVPGVLEYKGAKIQLLDLPGIIEGAADGKGRGRQVIAVARTADLI 81 (233)
T ss_pred EEEEECCCCCCHHHHHHHHHCCCccccCCCCccccceEEEEEECCeEEEEEECCCcccccccchhHHHHHHHhhccCCEE
Confidence 78999999999999999999998889999999999999999999999999999998776555556667777788999999
Q ss_pred HHHHhcCChHHHHHHHHHHHHHccCccccccCcccccceeccceeeeecCCCCCCCHHHHHHHHHHhcccCcEEEEccCC
Q 018394 101 LMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNAEVLFREDA 180 (356)
Q Consensus 101 ~~v~d~~~~~~~~~~i~~~L~~~~i~l~~~~~~lS~g~~qr~~ial~~DEp~~~LD~~~~~~il~~l~~~~~~i~~thd~ 180 (356)
++|+|++....+.+.+.++|+.+|+.++++++.++...+..++|.+....+..++|++.++.+|++++++++.+.+.++.
T Consensus 82 l~V~D~t~~~~~~~~~~~~l~~~gi~l~~~~~~v~~~~~~~ggi~~~~~~~~~~~~~~~v~~~l~~~~i~~~~v~~~~~~ 161 (233)
T cd01896 82 LMVLDATKPEGHREILERELEGVGIRLNKRPPNITIKKKKKGGINITSTVPLTKLDEKTIKAILREYKIHNADVLIREDI 161 (233)
T ss_pred EEEecCCcchhHHHHHHHHHHHcCceecCCCCeEEEEEEecCCEEEeccCCCCCCCHHHHHHHHHHhCeeeEEEEEccCC
Confidence 99999987766778899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHhccccccceEEEeecCCCCChhhHHHHhcCCCEEEeccccccchHHHHHHHHHHhCceEEEeC
Q 018394 181 TVDDLIDVIEGNRKYMKCVYVYNKIDVIGIDDVDKLARQPNSVVISCNLKLNLDRLLARMWEEMGLVRVYTK 252 (356)
Q Consensus 181 ~~~~~~~~i~~~~~~~p~i~v~NK~Dl~~~~~~~~l~~~~~~i~iSa~~~~~l~~L~~~i~~~l~~i~~~~~ 252 (356)
+.++++|.+.+++.|+|+++|+||+|+...++...+...++++++||+++.|+++|.+.+++.|+++|+|||
T Consensus 162 ~~~~~~~~~~~~~~y~p~iiV~NK~Dl~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~~~i~~~L~~irvy~k 233 (233)
T cd01896 162 TVDDLIDVIEGNRVYIPCLYVYNKIDLISIEELDLLARQPNSVVISAEKGLNLDELKERIWDKLGLIRVYTK 233 (233)
T ss_pred CHHHHHHHHhCCceEeeEEEEEECccCCCHHHHHHHhcCCCEEEEcCCCCCCHHHHHHHHHHHhCcEEEecC
Confidence 999999999999999999999999999888777766666678999999999999999999999999999996
No 7
>PRK09601 GTP-binding protein YchF; Reviewed
Probab=100.00 E-value=1.8e-38 Score=303.70 Aligned_cols=285 Identities=25% Similarity=0.344 Sum_probs=207.7
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcCCCCccccccccccccceEEEECCE-----------------eecccCcccccccccc
Q 018394 20 GRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDT-----------------KIQLLDLPGIIEGASE 82 (356)
Q Consensus 20 ~~v~LvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~-----------------~i~~~D~pGl~~~~~~ 82 (356)
..|+|||.||||||||||+||+..+.+++|||||++|+.|.+.+.+. ++.++|+||++.+++.
T Consensus 3 ~~vgIVG~PNvGKSTLfnaLt~~~~~v~nypftTi~p~~G~~~v~d~r~~~l~~~~~p~~~~~a~i~lvD~pGL~~~a~~ 82 (364)
T PRK09601 3 LKCGIVGLPNVGKSTLFNALTKAGAEAANYPFCTIEPNVGVVPVPDPRLDKLAEIVKPKKIVPATIEFVDIAGLVKGASK 82 (364)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCCeecccccccccceEEEEEeccccchhhHHhcCCccccCceEEEEECCCCCCCCCh
Confidence 58999999999999999999999989999999999999999998762 5889999999988888
Q ss_pred CccccccccccccchhHHHHHHhcC------------ChHHHHHHHHHHHHHccC-ccccccCcccccceeccceeeeec
Q 018394 83 GKGRGRQVIAVSKSSDIVLMVLDAS------------KSEGHRQILTKELEAVGL-RLNKRPPQIYFKKKKTGGISFNST 149 (356)
Q Consensus 83 ~~~~~~~~~~~~~~~d~i~~v~d~~------------~~~~~~~~i~~~L~~~~i-~l~~~~~~lS~g~~qr~~ial~~D 149 (356)
+.+++++++..++++|++++|+|++ ++.++.+.+..+|...++ .+.+++..+....+. ..-.. .
T Consensus 83 g~glg~~fL~~i~~aD~li~VVd~f~d~~~~~~~~~~dP~~d~~~i~~EL~~~d~~~~ek~~~k~~k~~~~-~~~~~--~ 159 (364)
T PRK09601 83 GEGLGNQFLANIREVDAIVHVVRCFEDDNITHVEGKVDPIRDIETINTELILADLETVEKRLERLEKKAKG-GDKEA--K 159 (364)
T ss_pred HHHHHHHHHHHHHhCCEEEEEEeCCccCCCCCCCCCCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhc-cchhH--H
Confidence 8888899999999999999999875 255677788888888777 555555544422110 00000 0
Q ss_pred CCCCCCCHHHHHHHHHHhcccCcEEEEccCCCHHHHHHHHhc--cccccceEEEeecCCC--C-ChhhHHHHhc-----C
Q 018394 150 LPLTHVDEKLCYQILHEYKIHNAEVLFREDATVDDLIDVIEG--NRKYMKCVYVYNKIDV--I-GIDDVDKLAR-----Q 219 (356)
Q Consensus 150 Ep~~~LD~~~~~~il~~l~~~~~~i~~thd~~~~~~~~~i~~--~~~~~p~i~v~NK~Dl--~-~~~~~~~l~~-----~ 219 (356)
+- ...+..+.+.+..+.. .-..+|+.++.. .+.. ....||+++|+|+.|. . ..+.++++.. .
T Consensus 160 ~e-----~~~l~~v~~~Le~~~~--~~~~~~~~~e~~-~l~~~~llt~KP~i~v~N~~e~~~~~~~~~~~~i~~~~~~~~ 231 (364)
T PRK09601 160 AE-----LELLEKLLEHLEEGKP--ARTLELTDEEEK-LLKSLQLLTAKPVLYVANVDEDDLADGNPYVKKVREIAAKEG 231 (364)
T ss_pred HH-----HHHHHHHHHHHHcCCC--cccCCCCHHHHH-HHHHhcccccCCeEEEEECCccccccccHHHHHHHHHHHHcC
Confidence 00 0011222222222111 123467766642 3322 3445999999999974 2 2333444332 2
Q ss_pred CCEEEecccccc----------------------chHHHHHHHHHHhCceEEEeCCCCCCCCCCccEEeecCCCCCCHHH
Q 018394 220 PNSVVISCNLKL----------------------NLDRLLARMWEEMGLVRVYTKPQGQQPDFTEPVVLSVDRGGCTVED 277 (356)
Q Consensus 220 ~~~i~iSa~~~~----------------------~l~~L~~~i~~~l~~i~~~~~~~~~~p~~~~~~~~~~~r~g~~v~~ 277 (356)
.+++++||+.+. |++.+....++.|+++.+||.. ++..++|++++ |+|+.+
T Consensus 232 ~~~i~~sa~~E~el~~l~~ee~~~fl~~~g~~~s~~~~ii~~~~~~L~li~fftvg----~~evrawti~~---GstA~~ 304 (364)
T PRK09601 232 AEVVVICAKIEAEIAELDDEEKAEFLEELGLEESGLDRLIRAGYELLGLITYFTAG----PKEVRAWTIKK---GTTAPQ 304 (364)
T ss_pred CeEEEEEHHHHHHHHcCCHHHHHHHHHHcCCcchhHHHHHHHHHHHhCCEEEecCC----CCeEEEEEeCC---CCchHH
Confidence 348899985443 4567788889999999999985 45679999999 999999
Q ss_pred HHHHHHHhHhhcCcEeEEecc----------CCccCC-ccc-CCCceeCCCCeEEEE
Q 018394 278 FCNHIHRSLVKDVKYVLVWGT----------SARHYP-QHC-GLGHVLQDEDVVQIV 322 (356)
Q Consensus 278 ~a~~ih~~l~~~f~~a~~wg~----------s~~~~~-~~v-g~~~~l~d~Dvv~i~ 322 (356)
+|..||+||.++|.+|.|+.. .+|..| .|+ |+||+++|||||.|-
T Consensus 305 aAg~IHsD~~kgFI~AeVi~~~d~~~~g~~~~ak~~gk~rleGkdY~v~DGDIi~f~ 361 (364)
T PRK09601 305 AAGVIHTDFEKGFIRAEVISYDDLIEYGSEAGAKEAGKVRLEGKDYIVQDGDVMHFR 361 (364)
T ss_pred HhhcchhhHhhccEEEEEecHHHHHHcCCHHHHHHccceeccCCceEecCCCEEEEE
Confidence 999999999999999998653 244434 567 999999999999984
No 8
>COG0012 Predicted GTPase, probable translation factor [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=5.6e-37 Score=289.14 Aligned_cols=282 Identities=23% Similarity=0.300 Sum_probs=207.7
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcCCCCccccccccccccceEEEECC------------------EeecccCccccccccc
Q 018394 20 GRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYND------------------TKIQLLDLPGIIEGAS 81 (356)
Q Consensus 20 ~~v~LvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g------------------~~i~~~D~pGl~~~~~ 81 (356)
..+||||.||+|||||||+||...+.++||||||++|+.|.+.+.+ .+++++|.+||+++++
T Consensus 3 l~~GIVGlPNVGKSTlFnAlT~~~a~~aNYPF~TIePN~Giv~v~d~rl~~L~~~~~c~~k~~~~~ve~vDIAGLV~GAs 82 (372)
T COG0012 3 LKIGIVGLPNVGKSTLFNALTKAGAEIANYPFCTIEPNVGVVYVPDCRLDELAEIVKCPPKIRPAPVEFVDIAGLVKGAS 82 (372)
T ss_pred ceeEEecCCCCcHHHHHHHHHcCCccccCCCcccccCCeeEEecCchHHHHHHHhcCCCCcEEeeeeEEEEecccCCCcc
Confidence 5799999999999999999999998899999999999999987643 4678999999999999
Q ss_pred cCccccccccccccchhHHHHHHhcCC------------hHHHHHHHHHHHHHccC-ccccccCcccccceeccceeeee
Q 018394 82 EGKGRGRQVIAVSKSSDIVLMVLDASK------------SEGHRQILTKELEAVGL-RLNKRPPQIYFKKKKTGGISFNS 148 (356)
Q Consensus 82 ~~~~~~~~~~~~~~~~d~i~~v~d~~~------------~~~~~~~i~~~L~~~~i-~l~~~~~~lS~g~~qr~~ial~~ 148 (356)
+|.|++++|++.++++|+|++|++++. |.++.+.+..+|..+.+ .+.+.+..++...+...
T Consensus 83 ~GeGLGNkFL~~IRevdaI~hVVr~f~d~di~hv~~~vDP~~DIe~I~~EL~l~d~~~lek~~~r~~k~a~~~~------ 156 (372)
T COG0012 83 KGEGLGNKFLDNIREVDAIIHVVRCFGDTDIEHVEGKVDPVEDIEIINTELILWDLESLEKRWERLEKRAKAGK------ 156 (372)
T ss_pred cCCCcchHHHHhhhhcCeEEEEEEecCCCcccCCCCCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc------
Confidence 999999999999999999999998763 56788889999888877 66666666553322110
Q ss_pred cCCCCCCCHHHHHHHHHHh-------cccCcEE-EEccCCCHHHHHHHHhc-cccccceEEEeecCCCCChh---hHHHH
Q 018394 149 TLPLTHVDEKLCYQILHEY-------KIHNAEV-LFREDATVDDLIDVIEG-NRKYMKCVYVYNKIDVIGID---DVDKL 216 (356)
Q Consensus 149 DEp~~~LD~~~~~~il~~l-------~~~~~~i-~~thd~~~~~~~~~i~~-~~~~~p~i~v~NK~Dl~~~~---~~~~l 216 (356)
.+| +..++.+..+ ....... +.-+.|+.+++...... ....||+++++||.|....+ .++.+
T Consensus 157 -----~~~-k~~~~~l~~l~~~~~~l~~~~~~~~~~~~~~~~e~~~~l~~l~llt~KP~lyvaN~~e~~~~~~n~~~~~i 230 (372)
T COG0012 157 -----KLD-KELKEELSLLGKLEEHLEEGKPARGLDLSKWSEEDLEALASLNLLTAKPMLYVANVSEDDLANLNEYVKRL 230 (372)
T ss_pred -----chH-HHHHHHHHHHHhHHHHHHhhhhhhcCCcccCCHHHHHHHHHhhhhhcCCeEEEEECCcccccchhHHHHHH
Confidence 011 1121211111 1111111 12234776665433322 34469999999999876432 24444
Q ss_pred hcC-----CCEEEecccccc-----------------------chHHHHHHHHHHhCceEEEeCCCCCCCCCCccEEeec
Q 018394 217 ARQ-----PNSVVISCNLKL-----------------------NLDRLLARMWEEMGLVRVYTKPQGQQPDFTEPVVLSV 268 (356)
Q Consensus 217 ~~~-----~~~i~iSa~~~~-----------------------~l~~L~~~i~~~l~~i~~~~~~~~~~p~~~~~~~~~~ 268 (356)
... ..++++||..+. ||+++..+-|..|+++.+||.. |.+.+.|.+.+
T Consensus 231 ~~~~~~~~~~vV~~sA~~E~eL~~l~~~~e~~~F~~~~g~~~~~l~~~i~~~y~~lgl~~~ft~g----~~evrawti~~ 306 (372)
T COG0012 231 KELAAKENAEVVPVSAAIELELRELADAEEKGEFLIELGQKESGLNELIRAGYGLLGLQTYFTAG----VKEVRAWTIKD 306 (372)
T ss_pred HHHhhhcCCcEEEeeHHHHHHHHhCccccchhhHHHhcCcchhHHHHHHHHHhcccchhHHHhhc----CCeEEEEEecc
Confidence 322 358999998764 3445555667788888888876 46778999999
Q ss_pred CCCCCCHHHHHHHHHHhHhhcCcEeEEeccC----------CccCCcc--cCCCceeCCCCeEE
Q 018394 269 DRGGCTVEDFCNHIHRSLVKDVKYVLVWGTS----------ARHYPQH--CGLGHVLQDEDVVQ 320 (356)
Q Consensus 269 ~r~g~~v~~~a~~ih~~l~~~f~~a~~wg~s----------~~~~~~~--vg~~~~l~d~Dvv~ 320 (356)
|++..++|..||+|+...|..|-+-... ++-.|.+ +|+||+|+||||+.
T Consensus 307 ---g~kap~aaG~Ih~Dfe~~fi~aevi~~~d~i~~~~~~~Akeag~~r~~GkdY~vqdGDVi~ 367 (372)
T COG0012 307 ---GSKAPDAAGVIHPDFEKGFIRAEVISYADLIHYGGEAAAKEAGKRRLEGKDYIVQDGDVIH 367 (372)
T ss_pred ---CCcccccCCccccchhhccccceEeeHHHHHhcCcHHHHHHhcceeeccccceecCCCEEE
Confidence 9999999999999999999999873221 4444554 99999999999994
No 9
>KOG1491 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]
Probab=99.98 E-value=9.6e-33 Score=254.93 Aligned_cols=287 Identities=20% Similarity=0.272 Sum_probs=210.8
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHcCCCCccccccccccccceEEEECC-----------------EeecccCccccccccc
Q 018394 19 HGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYND-----------------TKIQLLDLPGIIEGAS 81 (356)
Q Consensus 19 g~~v~LvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g-----------------~~i~~~D~pGl~~~~~ 81 (356)
...+||||.||+|||||||+||......+||||||+||+.+.+.+.+ .+++++|++|+.++++
T Consensus 20 ~lkiGIVGlPNvGKST~fnalT~~~a~~~NfPF~TIdPn~a~V~v~d~Rfd~l~~~Y~~~~~vpa~l~v~DIAGLvkGAs 99 (391)
T KOG1491|consen 20 NLKIGIVGLPNVGKSTFFNALTKSKAGAANFPFCTIDPNEARVEVPDSRFDLLCPIYGPKSKVPAFLTVYDIAGLVKGAS 99 (391)
T ss_pred cceeeEeeCCCCchHHHHHHHhcCCCCccCCCcceeccccceeecCchHHHHHHHhcCCcceeeeeEEEEeecccccCcc
Confidence 45899999999999999999999998899999999999999986643 4678899999999999
Q ss_pred cCccccccccccccchhHHHHHHhcCC------------hHHHHHHHHHHHHHccC-ccccccCcccccceeccceeeee
Q 018394 82 EGKGRGRQVIAVSKSSDIVLMVLDASK------------SEGHRQILTKELEAVGL-RLNKRPPQIYFKKKKTGGISFNS 148 (356)
Q Consensus 82 ~~~~~~~~~~~~~~~~d~i~~v~d~~~------------~~~~~~~i~~~L~~~~i-~l~~~~~~lS~g~~qr~~ial~~ 148 (356)
.|.|+++.|++.++.+|.|.+|++++. |..+.+.+.++|...++ .+.++++.++...+....
T Consensus 100 ~G~GLGN~FLs~iR~vDaifhVVr~f~d~di~hve~~vDPvrDieii~~EL~lkd~e~l~k~~e~~~k~~~~~~~----- 174 (391)
T KOG1491|consen 100 AGEGLGNKFLSHIRHVDAIFHVVRAFEDTDIIHVEGGVDPVRDIEIIQEELRLKDLEFLEKRLEKLEKKHKRTKS----- 174 (391)
T ss_pred cCcCchHHHHHhhhhccceeEEEEecCcccceeccCCCCchhhHHHHHHHHHHhHHHHHHHHHHHHhhhhhcccC-----
Confidence 999999999999999999999887653 56678888888887776 566666666544332111
Q ss_pred cCCCCCCCHHH-------HHHHHHHhcccCcEEEEccCCCHHHHHHHHhc-cccccceEEEeecCCCCC--h--hhHHHH
Q 018394 149 TLPLTHVDEKL-------CYQILHEYKIHNAEVLFREDATVDDLIDVIEG-NRKYMKCVYVYNKIDVIG--I--DDVDKL 216 (356)
Q Consensus 149 DEp~~~LD~~~-------~~~il~~l~~~~~~i~~thd~~~~~~~~~i~~-~~~~~p~i~v~NK~Dl~~--~--~~~~~l 216 (356)
++|... +..+.+.+-.....+...|+|+.+++.-.... ....+|+++++|++|-.- . ..+..+
T Consensus 175 -----~~~~~q~k~e~~~l~~v~~~ll~~kk~~~~~~~W~d~eieiln~~~lLt~kP~Vyl~N~se~dy~r~knk~l~~i 249 (391)
T KOG1491|consen 175 -----NLETKQLKFEYGLLEKVKEKLLDGKKPVRPKEKWNDEEIEILNKLFLLTAKPTVYLLNLSEHDYARKKNKKLPKI 249 (391)
T ss_pred -----cHHHHHHHHHHhHHHHHHHHHhccCCCCcchhhcCHHHHHHHHHhhhhhcCceEEEEecCcchhhhHHHHHHhhh
Confidence 111111 22222222222334455688887765432222 234589999999996542 1 123333
Q ss_pred hcC-------CCEEEecccccc---------------------chHHHHHHHHHHhCceEEEeCCCCCCCCCCccEEeec
Q 018394 217 ARQ-------PNSVVISCNLKL---------------------NLDRLLARMWEEMGLVRVYTKPQGQQPDFTEPVVLSV 268 (356)
Q Consensus 217 ~~~-------~~~i~iSa~~~~---------------------~l~~L~~~i~~~l~~i~~~~~~~~~~p~~~~~~~~~~ 268 (356)
..+ ..++++|+.-+. .|++++...++.|+++.+||.. |+....|++++
T Consensus 250 ~~w~~~~~~g~~~i~fs~~~e~ql~~~~~EE~~~~~~~~~~~s~L~~iI~~~~~~L~li~fFt~G----~~eV~~WtIr~ 325 (391)
T KOG1491|consen 250 KEWVDEVSPGDVVIVFSAAFESQLFELYEEEAVKELEDLGDSSALPKIIKTGYSALNLIVFFTCG----EDEVRAWTIRK 325 (391)
T ss_pred hhhhhccCCCCeEEEehHHHHHHhhccCHHHHHHHHHhcccccchhHHHHHHHHhhCceEEEeeC----Cchheeeehhh
Confidence 221 236788876553 3466777888999999999986 56788999999
Q ss_pred CCCCCCHHHHHHHHHHhHhhcCcEeEEeccC----------CccCC--cccCCCceeCCCCeEEEE
Q 018394 269 DRGGCTVEDFCNHIHRSLVKDVKYVLVWGTS----------ARHYP--QHCGLGHVLQDEDVVQIV 322 (356)
Q Consensus 269 ~r~g~~v~~~a~~ih~~l~~~f~~a~~wg~s----------~~~~~--~~vg~~~~l~d~Dvv~i~ 322 (356)
|+++.++|..||+||.++|..|-+.-.. ++-.| .++|++|+++||||+.+-
T Consensus 326 ---gt~ap~aagvihsdf~k~Fi~aev~~f~D~~~~k~e~a~k~~Gk~~~~Gk~yiVedGDIi~FK 388 (391)
T KOG1491|consen 326 ---GTKAPQAAGVIHSDFEKGFIMAEVMKFEDFKEYKSESACKAAGKYRQVGKEYIVEDGDIIFFK 388 (391)
T ss_pred ---ccccccccceeeehhhhhccccceeeeehHHHhcCHHHHHHhcchhhcCceeeecCCCEEEEe
Confidence 9999999999999999999999763221 22223 799999999999999763
No 10
>TIGR00092 GTP-binding protein YchF. This predicted GTP-binding protein is found in a single copy in every complete bacterial genome, and is found in Eukaryotes. A more distantly related protein, separated from this model, is found in the archaea. It is known to bind GTP and double-stranded nucleic acid. It is suggested to belong to a nucleoprotein complex and act as a translation factor.
Probab=99.97 E-value=2.5e-31 Score=254.61 Aligned_cols=279 Identities=22% Similarity=0.251 Sum_probs=194.6
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcCCC-CccccccccccccceEEEECC-----------------EeecccCccccccccc
Q 018394 20 GRVALIGFPSVGKSTLLTLLTGTHS-EAASYEFTTLTCIPGIIHYND-----------------TKIQLLDLPGIIEGAS 81 (356)
Q Consensus 20 ~~v~LvG~~gaGKSTLln~L~g~~~-~vs~~p~TT~~~~~G~i~~~g-----------------~~i~~~D~pGl~~~~~ 81 (356)
..+||||.||+|||||||+||+..+ ++++|||||.+|+.|++.+.+ ..+.++|.||++.+++
T Consensus 3 lk~GivGlPn~GKSTlfnaLT~~~~~~~a~ypftTi~p~~g~v~v~d~r~d~L~~~~~~~~~~~a~i~~~DiaGlv~gAs 82 (368)
T TIGR00092 3 LSGGIVGLPNVGKSTLFAATTNLLGNEAANPPFTTIEPNAGVVNPSDPRLDLLAIYIKPEKVPPTTTEFVDIAGLVGGAS 82 (368)
T ss_pred ceEEEECCCCCChHHHHHHHhCCCccccCCCCCCCCCCceeEEEechhHHHHHHHHhCCcCcCCceEEEEeccccccchh
Confidence 5789999999999999999999998 999999999999999999876 3578899999999999
Q ss_pred cCccccccccccccchhHHHHHHhcCC------------hHHHHHHHHHHHHHccC-ccccccCcccccceeccceeeee
Q 018394 82 EGKGRGRQVIAVSKSSDIVLMVLDASK------------SEGHRQILTKELEAVGL-RLNKRPPQIYFKKKKTGGISFNS 148 (356)
Q Consensus 82 ~~~~~~~~~~~~~~~~d~i~~v~d~~~------------~~~~~~~i~~~L~~~~i-~l~~~~~~lS~g~~qr~~ial~~ 148 (356)
.+.|++++++..++++|++++|++++. +..+.+.+.++|...++ .++++...+....+..
T Consensus 83 ~g~Glgn~fL~~ir~~d~l~hVvr~f~d~~i~H~~~~~dp~~d~~~i~~EL~l~d~~~~ek~l~r~~k~~k~~------- 155 (368)
T TIGR00092 83 KGEGLGNQFLANIREVDIIQHVVRCFEDDIIHHVGNVDDPRDDFEIIDEELLKADEFLVEKRIGRSKKSAEGG------- 155 (368)
T ss_pred cccCcchHHHHHHHhCCEEEEEEeCCCCcccCccCCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhcc-------
Confidence 999999999999999999999988753 44566677777777665 3444333333110000
Q ss_pred cCCCCCCCHHHHHHHHHHhc---ccCcEEEEcc-CCCHHHHHHHHhc--cccccceEEEeecCC--CCCh-hh----HHH
Q 018394 149 TLPLTHVDEKLCYQILHEYK---IHNAEVLFRE-DATVDDLIDVIEG--NRKYMKCVYVYNKID--VIGI-DD----VDK 215 (356)
Q Consensus 149 DEp~~~LD~~~~~~il~~l~---~~~~~i~~th-d~~~~~~~~~i~~--~~~~~p~i~v~NK~D--l~~~-~~----~~~ 215 (356)
-+......++..+. ..+.. +.+ +++.++ ...+.. ....+|+++|+|=-+ +... .. .+.
T Consensus 156 ------k~~~~e~~ll~~~~~~Le~~~~--~r~~~~~~ee-~~~~~~~~llt~Kp~~~v~N~~e~~~~~~n~~~~~~~~~ 226 (368)
T TIGR00092 156 ------KDKKEELLLLEIILPLLNGGQM--ARHVDLSKEE-LILIKSLNLLTKKPIILIANVSEDYLRNLNNNYLLIVEW 226 (368)
T ss_pred ------hhhHHHHHHHHHHHHHHhCCCe--eccCCCCHHH-HHHHHhCcchhhCCEEEEEECCHHHhhhcccHHHHHHHH
Confidence 00111122222222 12222 223 233332 222222 344589999988542 1100 11 111
Q ss_pred Hhc----CCCEEEecccccc-----------------------chHHHHHHHHHHhCceEEEeCCCCCCCCCCccEEeec
Q 018394 216 LAR----QPNSVVISCNLKL-----------------------NLDRLLARMWEEMGLVRVYTKPQGQQPDFTEPVVLSV 268 (356)
Q Consensus 216 l~~----~~~~i~iSa~~~~-----------------------~l~~L~~~i~~~l~~i~~~~~~~~~~p~~~~~~~~~~ 268 (356)
... ...++++||+.+. +++.|....++.|+++.+||.+ ++..++|.+++
T Consensus 227 ~~~~~~~~~~~~~~~a~~E~el~~l~~ee~~~fl~~~g~~~s~~~~~ii~~~y~lL~L~sFfT~g----~~EvRaWti~~ 302 (368)
T TIGR00092 227 IAAYSKGDPKVVFVCALEESELSELDDEERQEFLQKLGLTESAGLNIIIRARYKLLLLSFFFTGG----KEEVRAWTRKG 302 (368)
T ss_pred HhhcCcCCCeEEEeEHHHHHHHhcCCHHHHHHHHHHcCCcccchHHHHHHHHHHHhCeeEEEcCC----CceeEEeecCC
Confidence 111 1235666664332 4566888889999999999975 56789999999
Q ss_pred CCCCCCHHHHHHHHHHhHhhcCcEeEEeccC----------CccCC--cccCCCceeCCCCeEEE
Q 018394 269 DRGGCTVEDFCNHIHRSLVKDVKYVLVWGTS----------ARHYP--QHCGLGHVLQDEDVVQI 321 (356)
Q Consensus 269 ~r~g~~v~~~a~~ih~~l~~~f~~a~~wg~s----------~~~~~--~~vg~~~~l~d~Dvv~i 321 (356)
|+|+.++|..||+||.++|..|.|.... +|-.| +..|+||+++||||+.+
T Consensus 303 ---G~~Ap~AAG~IHsDfekgFIrAEV~~yddl~~~gs~~~~k~~Gk~r~eGK~YivqDGDIi~f 364 (368)
T TIGR00092 303 ---GWAAPQAAGIIHTDFETGFIAAEVISWDDFIYKKSSQGAKKGGLMRLEGKYYVVDDGDVLFF 364 (368)
T ss_pred ---CCchhHhcCCcccccccCceEEEEecHHHHHHcCCHHHHHhcCchhhcCCeEEeeCCeEEEE
Confidence 9999999999999999999999984332 44445 78899999999999987
No 11
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.96 E-value=2.8e-28 Score=213.90 Aligned_cols=162 Identities=21% Similarity=0.197 Sum_probs=132.4
Q ss_pred CCCCeEEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCccccccccccccceEEEECCEeecccCccccccccccCcccc
Q 018394 8 AGEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRG 87 (356)
Q Consensus 8 ~~~s~~v~~~~g~~v~LvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~~D~pGl~~~~~~~~~~~ 87 (356)
+|++++|.+ |+.++|+||+||||||||+||.++..+ ++|.|.++|.++..-. .+ .......|++
T Consensus 19 kgi~l~v~~--Gevv~iiGpSGSGKSTlLRclN~LE~~-----------~~G~I~i~g~~~~~~~--~~-~~~R~~vGmV 82 (240)
T COG1126 19 KGISLSVEK--GEVVVIIGPSGSGKSTLLRCLNGLEEP-----------DSGSITVDGEDVGDKK--DI-LKLRRKVGMV 82 (240)
T ss_pred cCcceeEcC--CCEEEEECCCCCCHHHHHHHHHCCcCC-----------CCceEEECCEeccchh--hH-HHHHHhcCee
Confidence 689999999 889999999999999999999999987 8999999997764321 11 1223467889
Q ss_pred ccccccccchhHHHHHH------hcCChHHHHHHHHHHHHHccC--ccccccCcccccceecccee---------eeecC
Q 018394 88 RQVIAVSKSSDIVLMVL------DASKSEGHRQILTKELEAVGL--RLNKRPPQIYFKKKKTGGIS---------FNSTL 150 (356)
Q Consensus 88 ~~~~~~~~~~d~i~~v~------d~~~~~~~~~~i~~~L~~~~i--~l~~~~~~lS~g~~qr~~ia---------l~~DE 150 (356)
+|...+|+...++..+. ......+..+.+.++|+++|+ ..+.+|.+|||||+||++|| +++||
T Consensus 83 FQ~fnLFPHlTvleNv~lap~~v~~~~k~eA~~~A~~lL~~VGL~~ka~~yP~qLSGGQqQRVAIARALaM~P~vmLFDE 162 (240)
T COG1126 83 FQQFNLFPHLTVLENVTLAPVKVKKLSKAEAREKALELLEKVGLADKADAYPAQLSGGQQQRVAIARALAMDPKVMLFDE 162 (240)
T ss_pred cccccccccchHHHHHHhhhHHHcCCCHHHHHHHHHHHHHHcCchhhhhhCccccCcHHHHHHHHHHHHcCCCCEEeecC
Confidence 99988888876665543 233455667788999999999 89999999999999999998 88899
Q ss_pred CCCCCCHHHHHHHHHHhc---c-cCcEEEEccCCCHHHH
Q 018394 151 PLTHVDEKLCYQILHEYK---I-HNAEVLFREDATVDDL 185 (356)
Q Consensus 151 p~~~LD~~~~~~il~~l~---~-~~~~i~~thd~~~~~~ 185 (356)
|||+|||+.+.++|.-+. . +-|.+++||++.++.-
T Consensus 163 PTSALDPElv~EVL~vm~~LA~eGmTMivVTHEM~FAr~ 201 (240)
T COG1126 163 PTSALDPELVGEVLDVMKDLAEEGMTMIIVTHEMGFARE 201 (240)
T ss_pred CcccCCHHHHHHHHHHHHHHHHcCCeEEEEechhHHHHH
Confidence 999999999777665544 3 4499999999987654
No 12
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=99.95 E-value=1.5e-27 Score=214.04 Aligned_cols=167 Identities=20% Similarity=0.247 Sum_probs=131.5
Q ss_pred CCCCeEEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCccccccccccccceEEEECCEeecccCccccccccccCcccc
Q 018394 8 AGEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRG 87 (356)
Q Consensus 8 ~~~s~~v~~~~g~~v~LvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~~D~pGl~~~~~~~~~~~ 87 (356)
++++|+|.+ |+.|+|+||+|||||||||+|.|...| ++|.+.++|.++.-++...+.......+|+.
T Consensus 22 ~~v~l~i~~--Ge~vaI~GpSGSGKSTLLniig~ld~p-----------t~G~v~i~g~d~~~l~~~~~~~~R~~~iGfv 88 (226)
T COG1136 22 KDVNLEIEA--GEFVAIVGPSGSGKSTLLNLLGGLDKP-----------TSGEVLINGKDLTKLSEKELAKLRRKKIGFV 88 (226)
T ss_pred ccceEEEcC--CCEEEEECCCCCCHHHHHHHHhcccCC-----------CCceEEECCEEcCcCCHHHHHHHHHHhEEEE
Confidence 589999999 889999999999999999999999988 8999999999888776554444445667888
Q ss_pred ccccccccchhHHHHHH---hcC--ChHHHHHHHHHHHHHccC--ccc-cccCcccccceecccee---------eeecC
Q 018394 88 RQVIAVSKSSDIVLMVL---DAS--KSEGHRQILTKELEAVGL--RLN-KRPPQIYFKKKKTGGIS---------FNSTL 150 (356)
Q Consensus 88 ~~~~~~~~~~d~i~~v~---d~~--~~~~~~~~i~~~L~~~~i--~l~-~~~~~lS~g~~qr~~ia---------l~~DE 150 (356)
+|....++...+...+. ... ......+.+.++++.+|+ ... ++|.+|||||+||++|| |++||
T Consensus 89 FQ~~nLl~~ltv~ENv~lpl~~~~~~~~~~~~~~~~l~~~lgl~~~~~~~~p~eLSGGqqQRVAIARAL~~~P~iilADE 168 (226)
T COG1136 89 FQNFNLLPDLTVLENVELPLLIAGKSAGRRKRAAEELLEVLGLEDRLLKKKPSELSGGQQQRVAIARALINNPKIILADE 168 (226)
T ss_pred CccCCCCCCCCHHHHHHhHHHHcCCChhHHHHHHHHHHHhcCChhhhccCCchhcCHHHHHHHHHHHHHhcCCCeEEeeC
Confidence 88888777755544332 121 111345667888888899 455 88999999999999998 99999
Q ss_pred CCCCCCHHHHHHHHHHhc---c--cCcEEEEccCCCHHHHHH
Q 018394 151 PLTHVDEKLCYQILHEYK---I--HNAEVLFREDATVDDLID 187 (356)
Q Consensus 151 p~~~LD~~~~~~il~~l~---~--~~~~i~~thd~~~~~~~~ 187 (356)
||.+||.++..+++..+. . +.|+|++|||..++..+|
T Consensus 169 PTgnLD~~t~~~V~~ll~~~~~~~g~tii~VTHd~~lA~~~d 210 (226)
T COG1136 169 PTGNLDSKTAKEVLELLRELNKERGKTIIMVTHDPELAKYAD 210 (226)
T ss_pred ccccCChHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHhCC
Confidence 999999998665555443 2 449999999998877654
No 13
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.94 E-value=5.4e-27 Score=211.00 Aligned_cols=156 Identities=22% Similarity=0.215 Sum_probs=122.2
Q ss_pred CCCCeEEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCccccccccccccceEEEECCEeecccCccccccccccCcccc
Q 018394 8 AGEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRG 87 (356)
Q Consensus 8 ~~~s~~v~~~~g~~v~LvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~~D~pGl~~~~~~~~~~~ 87 (356)
.+++|+|.+ |++|+|+||+|||||||||+|+|...| ..|.+.++|.++. -| ...++++
T Consensus 20 ~~i~L~v~~--GEfvsilGpSGcGKSTLLriiAGL~~p-----------~~G~V~~~g~~v~---~p------~~~~~~v 77 (248)
T COG1116 20 EDINLSVEK--GEFVAILGPSGCGKSTLLRLIAGLEKP-----------TSGEVLLDGRPVT---GP------GPDIGYV 77 (248)
T ss_pred ccceeEECC--CCEEEEECCCCCCHHHHHHHHhCCCCC-----------CCceEEECCcccC---CC------CCCEEEE
Confidence 689999999 889999999999999999999999987 8999999998872 12 2245566
Q ss_pred ccccccccc---hhHHHHHHhcC--ChHHHHHHHHHHHHHccC--ccccccCcccccceecccee---------eeecCC
Q 018394 88 RQVIAVSKS---SDIVLMVLDAS--KSEGHRQILTKELEAVGL--RLNKRPPQIYFKKKKTGGIS---------FNSTLP 151 (356)
Q Consensus 88 ~~~~~~~~~---~d~i~~v~d~~--~~~~~~~~i~~~L~~~~i--~l~~~~~~lS~g~~qr~~ia---------l~~DEp 151 (356)
+|....++- .|++.+.++.. ...+..+++.+.|+.+|+ ..+++|.+|||||+||++|| +++|||
T Consensus 78 FQ~~~LlPW~Tv~~NV~l~l~~~~~~~~e~~~~a~~~L~~VgL~~~~~~~P~qLSGGMrQRVaiARAL~~~P~lLLlDEP 157 (248)
T COG1116 78 FQEDALLPWLTVLDNVALGLELRGKSKAEARERAKELLELVGLAGFEDKYPHQLSGGMRQRVAIARALATRPKLLLLDEP 157 (248)
T ss_pred eccCcccchhhHHhhheehhhccccchHhHHHHHHHHHHHcCCcchhhcCccccChHHHHHHHHHHHHhcCCCEEEEcCC
Confidence 776665554 45555555543 233445689999999999 89999999999999999998 999999
Q ss_pred CCCCCHHHHHHHHH----Hhc-ccCcEEEEccCCCHHHH
Q 018394 152 LTHVDEKLCYQILH----EYK-IHNAEVLFREDATVDDL 185 (356)
Q Consensus 152 ~~~LD~~~~~~il~----~l~-~~~~~i~~thd~~~~~~ 185 (356)
|++||.-+...+-+ ... ...|++++|||++++-.
T Consensus 158 FgALDalTR~~lq~~l~~lw~~~~~TvllVTHdi~EAv~ 196 (248)
T COG1116 158 FGALDALTREELQDELLRLWEETRKTVLLVTHDVDEAVY 196 (248)
T ss_pred cchhhHHHHHHHHHHHHHHHHhhCCEEEEEeCCHHHHHh
Confidence 99999987433322 222 34699999999876543
No 14
>COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.94 E-value=1.4e-26 Score=212.81 Aligned_cols=186 Identities=21% Similarity=0.241 Sum_probs=148.0
Q ss_pred CCCCeEEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCccccccccccccceEEEECCEeecccCccccccccccCcccc
Q 018394 8 AGEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRG 87 (356)
Q Consensus 8 ~~~s~~v~~~~g~~v~LvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~~D~pGl~~~~~~~~~~~ 87 (356)
+++||+|.+ |+++||||++|||||||++++.++..| ++|.+.++|.++.-++-.+++. ..+.+|+.
T Consensus 23 ~~vsL~I~~--GeI~GIIG~SGAGKSTLiR~iN~Le~P-----------tsG~v~v~G~di~~l~~~~Lr~-~R~~IGMI 88 (339)
T COG1135 23 DDVSLEIPK--GEIFGIIGYSGAGKSTLLRLINLLERP-----------TSGSVFVDGQDLTALSEAELRQ-LRQKIGMI 88 (339)
T ss_pred ccceEEEcC--CcEEEEEcCCCCcHHHHHHHHhccCCC-----------CCceEEEcCEecccCChHHHHH-HHhhccEE
Confidence 589999999 889999999999999999999999988 8999999999998888888765 45678888
Q ss_pred ccccccccc---hhHHHHHHhcC--ChHHHHHHHHHHHHHccC--ccccccCcccccceecccee---------eeecCC
Q 018394 88 RQVIAVSKS---SDIVLMVLDAS--KSEGHRQILTKELEAVGL--RLNKRPPQIYFKKKKTGGIS---------FNSTLP 151 (356)
Q Consensus 88 ~~~~~~~~~---~d~i~~v~d~~--~~~~~~~~i~~~L~~~~i--~l~~~~~~lS~g~~qr~~ia---------l~~DEp 151 (356)
+|....+.. .+++.+-+... ...+-.+++.++|+.+|+ +.+++|.+||+||+||++|| ++.|||
T Consensus 89 FQhFnLLssrTV~~NvA~PLeiag~~k~ei~~RV~elLelVgL~dk~~~yP~qLSGGQKQRVaIARALa~~P~iLL~DEa 168 (339)
T COG1135 89 FQHFNLLSSRTVFENVAFPLELAGVPKAEIKQRVAELLELVGLSDKADRYPAQLSGGQKQRVAIARALANNPKILLCDEA 168 (339)
T ss_pred eccccccccchHHhhhhhhHhhcCCCHHHHHHHHHHHHHHcCChhhhccCchhcCcchhhHHHHHHHHhcCCCEEEecCc
Confidence 887776654 55565555433 334456789999999999 89999999999999999998 889999
Q ss_pred CCCCCHHHHHHHHHHhc-----ccCcEEEEccCCCHHHHHHHHhccccccceEEEeecCCCCChhhHHHH
Q 018394 152 LTHVDEKLCYQILHEYK-----IHNAEVLFREDATVDDLIDVIEGNRKYMKCVYVYNKIDVIGIDDVDKL 216 (356)
Q Consensus 152 ~~~LD~~~~~~il~~l~-----~~~~~i~~thd~~~~~~~~~i~~~~~~~p~i~v~NK~Dl~~~~~~~~l 216 (356)
||+|||++...+|..++ .+-|++++||.+++...+ |..+.|+...-+.....+.++
T Consensus 169 TSALDP~TT~sIL~LL~~In~~lglTIvlITHEm~Vvk~i---------c~rVavm~~G~lvE~G~v~~v 229 (339)
T COG1135 169 TSALDPETTQSILELLKDINRELGLTIVLITHEMEVVKRI---------CDRVAVLDQGRLVEEGTVSEV 229 (339)
T ss_pred cccCChHHHHHHHHHHHHHHHHcCCEEEEEechHHHHHHH---------hhhheEeeCCEEEEeccHHHh
Confidence 99999999777666654 234999999998754322 355666666655544444443
No 15
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=99.94 E-value=2.4e-26 Score=205.85 Aligned_cols=184 Identities=18% Similarity=0.196 Sum_probs=143.3
Q ss_pred CCCCeEEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCccccccccccccceEEEECCEeecccCccccccccccCcccc
Q 018394 8 AGEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRG 87 (356)
Q Consensus 8 ~~~s~~v~~~~g~~v~LvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~~D~pGl~~~~~~~~~~~ 87 (356)
.++||+|++ |+.++|+||+||||||+|++|.++..| ++|.|.++|.++.-+|...++. .+|++
T Consensus 18 ~~v~l~I~~--gef~vliGpSGsGKTTtLkMINrLiep-----------t~G~I~i~g~~i~~~d~~~LRr----~IGYv 80 (309)
T COG1125 18 DDVNLTIEE--GEFLVLIGPSGSGKTTTLKMINRLIEP-----------TSGEILIDGEDISDLDPVELRR----KIGYV 80 (309)
T ss_pred eeeeEEecC--CeEEEEECCCCCcHHHHHHHHhcccCC-----------CCceEEECCeecccCCHHHHHH----hhhhh
Confidence 689999999 889999999999999999999999876 8999999999998888666543 46776
Q ss_pred ccccccccc---hhHHHHHHhc--CChHHHHHHHHHHHHHccC----ccccccCcccccceecccee---------eeec
Q 018394 88 RQVIAVSKS---SDIVLMVLDA--SKSEGHRQILTKELEAVGL----RLNKRPPQIYFKKKKTGGIS---------FNST 149 (356)
Q Consensus 88 ~~~~~~~~~---~d~i~~v~d~--~~~~~~~~~i~~~L~~~~i----~l~~~~~~lS~g~~qr~~ia---------l~~D 149 (356)
-|...+|++ +++|..|-.. +...+-.+++.++|+.+|+ +.+++|.+|||||+||+|++ +++|
T Consensus 81 iQqigLFPh~Tv~eNIa~VP~L~~w~k~~i~~r~~ELl~lvgL~p~~~~~RyP~eLSGGQQQRVGv~RALAadP~ilLMD 160 (309)
T COG1125 81 IQQIGLFPHLTVAENIATVPKLLGWDKERIKKRADELLDLVGLDPSEYADRYPHELSGGQQQRVGVARALAADPPILLMD 160 (309)
T ss_pred hhhcccCCCccHHHHHHhhhhhcCCCHHHHHHHHHHHHHHhCCCHHHHhhcCchhcCcchhhHHHHHHHHhcCCCeEeec
Confidence 676666665 5566555433 4455566789999999999 68999999999999999987 8999
Q ss_pred CCCCCCCHHHHHHHHHHhc-----ccCcEEEEccCCCHHHHHHHHhccccccceEEEeecCCCCChhhHHHHh
Q 018394 150 LPLTHVDEKLCYQILHEYK-----IHNAEVLFREDATVDDLIDVIEGNRKYMKCVYVYNKIDVIGIDDVDKLA 217 (356)
Q Consensus 150 Ep~~~LD~~~~~~il~~l~-----~~~~~i~~thd~~~~~~~~~i~~~~~~~p~i~v~NK~Dl~~~~~~~~l~ 217 (356)
|||++||+-+..++-+++. .+.|+|++|||++++--+ -..|.++++..+..-...+++.
T Consensus 161 EPFgALDpI~R~~lQ~e~~~lq~~l~kTivfVTHDidEA~kL---------adri~vm~~G~i~Q~~~P~~il 224 (309)
T COG1125 161 EPFGALDPITRKQLQEEIKELQKELGKTIVFVTHDIDEALKL---------ADRIAVMDAGEIVQYDTPDEIL 224 (309)
T ss_pred CCccccChhhHHHHHHHHHHHHHHhCCEEEEEecCHHHHHhh---------hceEEEecCCeEEEeCCHHHHH
Confidence 9999999987555544443 467999999998754321 2668888877665333333333
No 16
>cd01899 Ygr210 Ygr210 subfamily. Ygr210 is a member of Obg-like family and present in archaea and fungi. They are characterized by a distinct glycine-rich motif immediately following the Walker B motif. The Ygr210 and YyaF/YchF subfamilies appear to form one major branch of the Obg-like family. Among eukaryotes, the Ygr210 subfamily is represented only in fungi. These fungal proteins form a tight cluster with their archaeal orthologs, which suggests the possibility of horizontal transfer from archaea to fungi.
Probab=99.94 E-value=4e-27 Score=223.88 Aligned_cols=220 Identities=25% Similarity=0.289 Sum_probs=157.5
Q ss_pred EEEEcCCCCcHHHHHHHHHcCCCCccccccccccccceEEEE---------------------C---CEeecccCccccc
Q 018394 22 VALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHY---------------------N---DTKIQLLDLPGII 77 (356)
Q Consensus 22 v~LvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~---------------------~---g~~i~~~D~pGl~ 77 (356)
++|+|.||||||||||+||+....+++|||||++|+.|...+ + +.+++++|+||++
T Consensus 1 i~ivG~pnvGKStLfn~lt~~~~~~~~~pftT~~p~~g~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~v~i~l~D~aGlv 80 (318)
T cd01899 1 IGLVGKPNAGKSTFFNAATLADVEIANYPFTTIDPNVGVGYVRVECPCKELGVSCNPRYGKCIDGKRYVPVELIDVAGLV 80 (318)
T ss_pred CEEECCCCCCHHHHHHHHhCCCCcccCCCCccccceeEEEEEecCCCchhhhhhhcccccccccCcCcceEEEEECCCCC
Confidence 589999999999999999999999999999999999998875 2 3578999999999
Q ss_pred cccccCccccccccccccchhHHHHHHhcCC---------------hHHHHHHHHHHHHHccC-ccccccCcccccceec
Q 018394 78 EGASEGKGRGRQVIAVSKSSDIVLMVLDASK---------------SEGHRQILTKELEAVGL-RLNKRPPQIYFKKKKT 141 (356)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~d~i~~v~d~~~---------------~~~~~~~i~~~L~~~~i-~l~~~~~~lS~g~~qr 141 (356)
+++..+.+++++++..++++|++++|+|.+. +..+.+.+.++|..+.+ .+.+++..+.... .+
T Consensus 81 ~ga~~~~glg~~fL~~ir~aD~ii~Vvd~~~~~d~~~~~~~~~~~dp~~d~~~i~~El~~~d~~~~~~~~~~~~~~~-~~ 159 (318)
T cd01899 81 PGAHEGKGLGNKFLDDLRDADALIHVVDASGGTDAEGNGVETGGHDPLEDIEFLENEIDMWIYGILEKNWEKIVRKA-DA 159 (318)
T ss_pred CCccchhhHHHHHHHHHHHCCEEEEEEeCCCCcccccccccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hc
Confidence 8888888888999999999999999998863 45577788888888755 4555555554211 11
Q ss_pred ccee--eeecCCCC--CCCHHHHHHHHHHhcccCcEEEEccCCCHHHHHHHHhccccccceEEEeecCCCCChhhH-HHH
Q 018394 142 GGIS--FNSTLPLT--HVDEKLCYQILHEYKIHNAEVLFREDATVDDLIDVIEGNRKYMKCVYVYNKIDVIGIDDV-DKL 216 (356)
Q Consensus 142 ~~ia--l~~DEp~~--~LD~~~~~~il~~l~~~~~~i~~thd~~~~~~~~~i~~~~~~~p~i~v~NK~Dl~~~~~~-~~l 216 (356)
.+.. ......++ +.+...++++|+. +...+.+....+.+.+++.+... ...+|+|+|+||+|+...++. +.+
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~v~~~L~~-~~~~~~~~~~~~~~~~~~~~~~l--lt~KPvI~VlNK~Dl~~~~~~~~~l 236 (318)
T cd01899 160 EKTDIVEALSEQLSGFGVNEKDVIEALEE-LELPEDLSKWTDEDLLRLARALR--KRSKPMVIAANKADIPDAENNISKL 236 (318)
T ss_pred CCccHHHHHHHHHhhccccHHHHHHHHHh-CCCCCcccCCCHHHHHHHHHHHH--hcCCcEEEEEEHHHccChHHHHHHH
Confidence 1111 11112233 5667778888855 33233322222333334444443 335899999999998754432 222
Q ss_pred h---cCCCEEEeccccccchHHHHH-HHHHHhC
Q 018394 217 A---RQPNSVVISCNLKLNLDRLLA-RMWEEMG 245 (356)
Q Consensus 217 ~---~~~~~i~iSa~~~~~l~~L~~-~i~~~l~ 245 (356)
. ....++++||+.+.++++|.+ .+.+.+.
T Consensus 237 ~~~~~~~~iI~iSA~~e~~L~~L~~~~i~~~lP 269 (318)
T cd01899 237 RLKYPDEIVVPTSAEAELALRRAAKQGLIKYDP 269 (318)
T ss_pred HhhCCCCeEEEEeCcccccHHHHHHhhHHHhCC
Confidence 1 234689999999999999998 5888774
No 17
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=99.93 E-value=7.3e-26 Score=214.46 Aligned_cols=184 Identities=20% Similarity=0.231 Sum_probs=143.5
Q ss_pred CCCCCeEEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCccccccccccccceEEEECCEeecccCccccccccccCccc
Q 018394 7 GAGEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGR 86 (356)
Q Consensus 7 ~~~~s~~v~~~~g~~v~LvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~~D~pGl~~~~~~~~~~ 86 (356)
-++++|++.. |++++|+|||||||||||++|+|+..+ ++|.|.++|.+++-+ | ....++++
T Consensus 19 l~~i~l~i~~--Gef~vllGPSGcGKSTlLr~IAGLe~~-----------~~G~I~i~g~~vt~l--~----P~~R~iam 79 (338)
T COG3839 19 LKDVNLDIED--GEFVVLLGPSGCGKSTLLRMIAGLEEP-----------TSGEILIDGRDVTDL--P----PEKRGIAM 79 (338)
T ss_pred eecceEEEcC--CCEEEEECCCCCCHHHHHHHHhCCCCC-----------CCceEEECCEECCCC--C----hhHCCEEE
Confidence 3689999999 889999999999999999999999987 899999999998753 2 24467888
Q ss_pred cccccccccc---hhHHHHHHhcCC--hHHHHHHHHHHHHHccC--ccccccCcccccceecccee---------eeecC
Q 018394 87 GRQVIAVSKS---SDIVLMVLDASK--SEGHRQILTKELEAVGL--RLNKRPPQIYFKKKKTGGIS---------FNSTL 150 (356)
Q Consensus 87 ~~~~~~~~~~---~d~i~~v~d~~~--~~~~~~~i~~~L~~~~i--~l~~~~~~lS~g~~qr~~ia---------l~~DE 150 (356)
++|..++++. .+++.|-+.... ..+...++.+.++.++| .++++|.+|||||+||++++ +++||
T Consensus 80 VFQ~yALyPhmtV~~Niaf~Lk~~~~~k~ei~~rV~eva~~L~l~~lL~r~P~~LSGGQrQRVAlaRAlVr~P~v~L~DE 159 (338)
T COG3839 80 VFQNYALYPHMTVYENIAFGLKLRGVPKAEIDKRVKEVAKLLGLEHLLNRKPLQLSGGQRQRVALARALVRKPKVFLLDE 159 (338)
T ss_pred EeCCccccCCCcHHHHhhhhhhhCCCchHHHHHHHHHHHHHcCChhHHhcCcccCChhhHHHHHHHHHHhcCCCEEEecC
Confidence 9998887776 667777666543 33446678999999999 89999999999999999998 89999
Q ss_pred CCCCCCHHHHHHHHHHhc-----ccCcEEEEccCCCHHHHHHHHhccccccceEEEeecCCCCChhhHHHHhc
Q 018394 151 PLTHVDEKLCYQILHEYK-----IHNAEVLFREDATVDDLIDVIEGNRKYMKCVYVYNKIDVIGIDDVDKLAR 218 (356)
Q Consensus 151 p~~~LD~~~~~~il~~l~-----~~~~~i~~thd~~~~~~~~~i~~~~~~~p~i~v~NK~Dl~~~~~~~~l~~ 218 (356)
|+++||.+...++..+++ .+.|.|++|||..++..+ -+.|+|+|..-+..-....+++.
T Consensus 160 PlSnLDa~lR~~mr~ei~~lh~~l~~T~IYVTHDq~EAmtl---------adri~Vm~~G~i~Q~g~p~ely~ 223 (338)
T COG3839 160 PLSNLDAKLRVLMRSEIKKLHERLGTTTIYVTHDQVEAMTL---------ADRIVVMNDGRIQQVGTPLELYE 223 (338)
T ss_pred chhHhhHHHHHHHHHHHHHHHHhcCCcEEEEcCCHHHHHhh---------CCEEEEEeCCeeeecCChHHHhh
Confidence 999999987444443333 245999999996544322 27789999665543333344443
No 18
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=99.93 E-value=9.6e-26 Score=193.94 Aligned_cols=169 Identities=22% Similarity=0.278 Sum_probs=133.1
Q ss_pred CCCCC-C-CCCCeEEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCccccccccccccceEEEECCEeecccCccccccc
Q 018394 2 YQGSS-G-AGEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEG 79 (356)
Q Consensus 2 y~~~~-~-~~~s~~v~~~~g~~v~LvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~~D~pGl~~~ 79 (356)
|.++. . .++||++++ |+++-|+||+|||||||++.|.+...| +.|.+.++|.++.-+....+ +.
T Consensus 11 Y~~g~~aL~~vs~~i~~--Gef~fl~GpSGAGKSTllkLi~~~e~p-----------t~G~i~~~~~dl~~l~~~~i-P~ 76 (223)
T COG2884 11 YPGGREALRDVSFHIPK--GEFVFLTGPSGAGKSTLLKLIYGEERP-----------TRGKILVNGHDLSRLKGREI-PF 76 (223)
T ss_pred cCCCchhhhCceEeecC--ceEEEEECCCCCCHHHHHHHHHhhhcC-----------CCceEEECCeeccccccccc-ch
Confidence 55553 2 699999999 889999999999999999999999887 89999999998876532221 12
Q ss_pred cccCccccccccccccc---hhHHHHHHhc--CChHHHHHHHHHHHHHccC--ccccccCcccccceecccee-------
Q 018394 80 ASEGKGRGRQVIAVSKS---SDIVLMVLDA--SKSEGHRQILTKELEAVGL--RLNKRPPQIYFKKKKTGGIS------- 145 (356)
Q Consensus 80 ~~~~~~~~~~~~~~~~~---~d~i~~v~d~--~~~~~~~~~i~~~L~~~~i--~l~~~~~~lS~g~~qr~~ia------- 145 (356)
....+|.++|....+.. +|++.+.+.. ..+.+-..++.+.|+.+|+ +.+..|.+||+|++||++||
T Consensus 77 LRR~IGvVFQD~rLL~~~tvyeNVA~pL~v~G~~~~~i~~rV~~~L~~VgL~~k~~~lP~~LSGGEQQRvaIARAiV~~P 156 (223)
T COG2884 77 LRRQIGVVFQDFRLLPDRTVYENVALPLRVIGKPPREIRRRVSEVLDLVGLKHKARALPSQLSGGEQQRVAIARAIVNQP 156 (223)
T ss_pred hhheeeeEeeeccccccchHhhhhhhhhhccCCCHHHHHHHHHHHHHHhccchhhhcCccccCchHHHHHHHHHHHccCC
Confidence 23456777776655544 5666555443 3344556789999999999 88999999999999999999
Q ss_pred --eeecCCCCCCCHHHHHHHHHHhc----ccCcEEEEccCCCHHH
Q 018394 146 --FNSTLPLTHVDEKLCYQILHEYK----IHNAEVLFREDATVDD 184 (356)
Q Consensus 146 --l~~DEp~~~LD~~~~~~il~~l~----~~~~~i~~thd~~~~~ 184 (356)
+++||||.+||++..+++|+.+. .+.|++|+|||..+.+
T Consensus 157 ~vLlADEPTGNLDp~~s~~im~lfeeinr~GtTVl~ATHd~~lv~ 201 (223)
T COG2884 157 AVLLADEPTGNLDPDLSWEIMRLFEEINRLGTTVLMATHDLELVN 201 (223)
T ss_pred CeEeecCCCCCCChHHHHHHHHHHHHHhhcCcEEEEEeccHHHHH
Confidence 89999999999999777776654 3459999999976543
No 19
>KOG1489 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]
Probab=99.93 E-value=2e-26 Score=211.50 Aligned_cols=165 Identities=35% Similarity=0.497 Sum_probs=132.3
Q ss_pred CeEEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCccccccccccccceEEEECCEe-ecccCccccccccccCcccccc
Q 018394 11 GFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTK-IQLLDLPGIIEGASEGKGRGRQ 89 (356)
Q Consensus 11 s~~v~~~~g~~v~LvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~-i~~~D~pGl~~~~~~~~~~~~~ 89 (356)
.|++.. -..++|||.||||||||||+|+...+.|++|||||+.|.-|.+.+++.. +++.|.|||+++++.+.|++.+
T Consensus 190 ~lELKs--iadvGLVG~PNAGKSTLL~als~AKpkVa~YaFTTL~P~iG~v~yddf~q~tVADiPGiI~GAh~nkGlG~~ 267 (366)
T KOG1489|consen 190 ELELKS--IADVGLVGFPNAGKSTLLNALSRAKPKVAHYAFTTLRPHIGTVNYDDFSQITVADIPGIIEGAHMNKGLGYK 267 (366)
T ss_pred EEEeee--ecccceecCCCCcHHHHHHHhhccCCcccccceeeeccccceeeccccceeEeccCccccccccccCcccHH
Confidence 344444 6789999999999999999999999999999999999999999998754 9999999999999999999999
Q ss_pred ccccccchhHHHHHHhcCCh-----HHHHHHHHHHHHHccCccccccCcccccceeccceeeeecCCCCCCCHHHHHHHH
Q 018394 90 VIAVSKSSDIVLMVLDASKS-----EGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQIL 164 (356)
Q Consensus 90 ~~~~~~~~d~i~~v~d~~~~-----~~~~~~i~~~L~~~~i~l~~~~~~lS~g~~qr~~ial~~DEp~~~LD~~~~~~il 164 (356)
|+..++.++.+++|+|.+.. .++.+.+..+|+.+
T Consensus 268 FLrHiER~~~l~fVvD~s~~~~~~p~~~~~lL~~ELe~y----------------------------------------- 306 (366)
T KOG1489|consen 268 FLRHIERCKGLLFVVDLSGKQLRNPWQQLQLLIEELELY----------------------------------------- 306 (366)
T ss_pred HHHHHHhhceEEEEEECCCcccCCHHHHHHHHHHHHHHH-----------------------------------------
Confidence 99999999999999998764 22333333333332
Q ss_pred HHhcccCcEEEEccCCCHHHHHHHHhccccccceEEEeecCCCCCh-hh-HHHHhcC---CCEEEeccccccchHHHHHH
Q 018394 165 HEYKIHNAEVLFREDATVDDLIDVIEGNRKYMKCVYVYNKIDVIGI-DD-VDKLARQ---PNSVVISCNLKLNLDRLLAR 239 (356)
Q Consensus 165 ~~l~~~~~~i~~thd~~~~~~~~~i~~~~~~~p~i~v~NK~Dl~~~-~~-~~~l~~~---~~~i~iSa~~~~~l~~L~~~ 239 (356)
+.....+|.++|+||+|++.. .+ ++.+.+. +.++++||++++|+.+|++.
T Consensus 307 -------------------------ek~L~~rp~liVaNKiD~~eae~~~l~~L~~~lq~~~V~pvsA~~~egl~~ll~~ 361 (366)
T KOG1489|consen 307 -------------------------EKGLADRPALIVANKIDLPEAEKNLLSSLAKRLQNPHVVPVSAKSGEGLEELLNG 361 (366)
T ss_pred -------------------------hhhhccCceEEEEeccCchhHHHHHHHHHHHHcCCCcEEEeeeccccchHHHHHH
Confidence 112234699999999999633 22 3556543 34899999999999999998
Q ss_pred HHHH
Q 018394 240 MWEE 243 (356)
Q Consensus 240 i~~~ 243 (356)
|.+.
T Consensus 362 lr~~ 365 (366)
T KOG1489|consen 362 LREL 365 (366)
T ss_pred Hhhc
Confidence 8754
No 20
>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=99.93 E-value=2.4e-25 Score=212.04 Aligned_cols=182 Identities=21% Similarity=0.240 Sum_probs=144.3
Q ss_pred CCCCeEEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCccccccccccccceEEEECCEeecccCccccccccccCcccc
Q 018394 8 AGEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRG 87 (356)
Q Consensus 8 ~~~s~~v~~~~g~~v~LvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~~D~pGl~~~~~~~~~~~ 87 (356)
.++||++.+ |++++|+|||||||||||++|+|...| +.|.|.++|.++.- .| .....++++
T Consensus 22 ~~isl~i~~--Gef~~lLGPSGcGKTTlLR~IAGfe~p-----------~~G~I~l~G~~i~~--lp----p~kR~ig~V 82 (352)
T COG3842 22 DDISLDIKK--GEFVTLLGPSGCGKTTLLRMIAGFEQP-----------SSGEILLDGEDITD--VP----PEKRPIGMV 82 (352)
T ss_pred ecceeeecC--CcEEEEECCCCCCHHHHHHHHhCCCCC-----------CCceEEECCEECCC--CC----hhhccccee
Confidence 589999999 889999999999999999999999987 89999999999874 33 345678899
Q ss_pred ccccccccc---hhHHHHHHhcCC--h-HHHHHHHHHHHHHccC--ccccccCcccccceecccee---------eeecC
Q 018394 88 RQVIAVSKS---SDIVLMVLDASK--S-EGHRQILTKELEAVGL--RLNKRPPQIYFKKKKTGGIS---------FNSTL 150 (356)
Q Consensus 88 ~~~~~~~~~---~d~i~~v~d~~~--~-~~~~~~i~~~L~~~~i--~l~~~~~~lS~g~~qr~~ia---------l~~DE 150 (356)
+|..++|+. +++|.|-+.... . .+..+++.+.|+.+++ +.+++|.+||+||+||+++| +++||
T Consensus 83 FQ~YALFPHltV~~NVafGLk~~~~~~~~~i~~rv~e~L~lV~L~~~~~R~p~qLSGGQqQRVALARAL~~~P~vLLLDE 162 (352)
T COG3842 83 FQSYALFPHMTVEENVAFGLKVRKKLKKAEIKARVEEALELVGLEGFADRKPHQLSGGQQQRVALARALVPEPKVLLLDE 162 (352)
T ss_pred ecCcccCCCCcHHHHhhhhhhhcCCCCHHHHHHHHHHHHHHcCchhhhhhChhhhChHHHHHHHHHHHhhcCcchhhhcC
Confidence 999888877 566666665222 2 2345689999999999 88999999999999999998 99999
Q ss_pred CCCCCCHHHHHHHHHHhc-----ccCcEEEEccCCCHHHHHHHHhccccccceEEEeecCCCCChhhHHHHh
Q 018394 151 PLTHVDEKLCYQILHEYK-----IHNAEVLFREDATVDDLIDVIEGNRKYMKCVYVYNKIDVIGIDDVDKLA 217 (356)
Q Consensus 151 p~~~LD~~~~~~il~~l~-----~~~~~i~~thd~~~~~~~~~i~~~~~~~p~i~v~NK~Dl~~~~~~~~l~ 217 (356)
|+++||.+...++..+++ .+-|.|++|||...+-- ..+.|+|+|+.-+......++++
T Consensus 163 PlSaLD~kLR~~mr~Elk~lq~~~giT~i~VTHDqeEAl~---------msDrI~Vm~~G~I~Q~gtP~eiY 225 (352)
T COG3842 163 PLSALDAKLREQMRKELKELQRELGITFVYVTHDQEEALA---------MSDRIAVMNDGRIEQVGTPEEIY 225 (352)
T ss_pred cccchhHHHHHHHHHHHHHHHHhcCCeEEEEECCHHHHhh---------hccceEEccCCceeecCCHHHHh
Confidence 999999987555554444 24589999999765432 23789999998665433334444
No 21
>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.92 E-value=4.4e-25 Score=196.07 Aligned_cols=168 Identities=20% Similarity=0.215 Sum_probs=134.8
Q ss_pred CCCCeEEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCccccccccccccceEEEECCEeecccCccccccccccCcccc
Q 018394 8 AGEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRG 87 (356)
Q Consensus 8 ~~~s~~v~~~~g~~v~LvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~~D~pGl~~~~~~~~~~~ 87 (356)
.+++|++++ |+.|+|||++||||||||++|.|+..+ +.|.+.++|.++.-.....++ .....+|+.
T Consensus 21 ~~Vnl~I~~--GE~VaiIG~SGaGKSTLLR~lngl~d~-----------t~G~i~~~g~~i~~~~~k~lr-~~r~~iGmI 86 (258)
T COG3638 21 KDVNLEINQ--GEMVAIIGPSGAGKSTLLRSLNGLVDP-----------TSGEILFNGVQITKLKGKELR-KLRRDIGMI 86 (258)
T ss_pred eeEeEEeCC--CcEEEEECCCCCcHHHHHHHHhcccCC-----------CcceEEecccchhccchHHHH-HHHHhceeE
Confidence 689999999 889999999999999999999997655 899999999877654333332 234567888
Q ss_pred ccccccccchhHHHHHHhcC-------------ChHHHHHHHHHHHHHccC--ccccccCcccccceecccee-------
Q 018394 88 RQVIAVSKSSDIVLMVLDAS-------------KSEGHRQILTKELEAVGL--RLNKRPPQIYFKKKKTGGIS------- 145 (356)
Q Consensus 88 ~~~~~~~~~~d~i~~v~d~~-------------~~~~~~~~i~~~L~~~~i--~l~~~~~~lS~g~~qr~~ia------- 145 (356)
+|...++.+.+++-.|+-.. -..++...+.+.|+++|| ....+..+|||||+||++||
T Consensus 87 fQ~~nLv~r~sv~~NVl~grl~~~s~~~slfglfsk~dk~~Al~aLervgi~~~A~qra~~LSGGQQQRVaIARaL~Q~p 166 (258)
T COG3638 87 FQQFNLVPRLSVLENVLLGRLGYTSTWRSLFGLFSKEDKAQALDALERVGILDKAYQRASTLSGGQQQRVAIARALVQQP 166 (258)
T ss_pred eccCCcccccHHHHHHHhhhcccchHHHHHhCCCCHHHHHHHHHHHHHcCcHHHHHHHhccCCcchhHHHHHHHHHhcCC
Confidence 88888888888876665432 134567788899999999 78889999999999999999
Q ss_pred --eeecCCCCCCCHHHHHHHHHHhc-----ccCcEEEEccCCCHH-HHHHHH
Q 018394 146 --FNSTLPLTHVDEKLCYQILHEYK-----IHNAEVLFREDATVD-DLIDVI 189 (356)
Q Consensus 146 --l~~DEp~~~LD~~~~~~il~~l~-----~~~~~i~~thd~~~~-~~~~~i 189 (356)
+++|||+++||+...+.+|+.++ .+.|+++..|+++++ +.++.+
T Consensus 167 kiILADEPvasLDp~~a~~Vm~~l~~in~~~g~Tvi~nLH~vdlA~~Y~~Ri 218 (258)
T COG3638 167 KIILADEPVASLDPESAKKVMDILKDINQEDGITVIVNLHQVDLAKKYADRI 218 (258)
T ss_pred CEEecCCcccccChhhHHHHHHHHHHHHHHcCCEEEEEechHHHHHHHHhhh
Confidence 88999999999999777776665 234999999998765 344443
No 22
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=99.92 E-value=2.6e-25 Score=203.30 Aligned_cols=174 Identities=18% Similarity=0.181 Sum_probs=132.2
Q ss_pred CCCCeEEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCccccccccccccceEEEECCEeecccCccccccccccCcccc
Q 018394 8 AGEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRG 87 (356)
Q Consensus 8 ~~~s~~v~~~~g~~v~LvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~~D~pGl~~~~~~~~~~~ 87 (356)
.++||++++ |++++|+|||||||||||++|+|...| ..|.|.++|.++.-+....+ ...+++.
T Consensus 19 ~~ls~~i~~--G~i~~iiGpNG~GKSTLLk~l~g~l~p-----------~~G~V~l~g~~i~~~~~kel----Ak~ia~v 81 (258)
T COG1120 19 DDLSFSIPK--GEITGILGPNGSGKSTLLKCLAGLLKP-----------KSGEVLLDGKDIASLSPKEL----AKKLAYV 81 (258)
T ss_pred ecceEEecC--CcEEEEECCCCCCHHHHHHHHhccCCC-----------CCCEEEECCCchhhcCHHHH----hhhEEEe
Confidence 689999999 889999999999999999999999877 89999999998876554332 2233444
Q ss_pred cccc---ccccchhHHHHHHhc------CChHHHHHHHHHHHHHccC--ccccccCcccccceecccee---------ee
Q 018394 88 RQVI---AVSKSSDIVLMVLDA------SKSEGHRQILTKELEAVGL--RLNKRPPQIYFKKKKTGGIS---------FN 147 (356)
Q Consensus 88 ~~~~---~~~~~~d~i~~v~d~------~~~~~~~~~i~~~L~~~~i--~l~~~~~~lS~g~~qr~~ia---------l~ 147 (356)
.|.. ..+...|++.+.... ....++.+.+.+.|+.+++ ..++.+.+|||||+||+.|| ++
T Consensus 82 pQ~~~~~~~~tV~d~V~~GR~p~~~~~~~~~~~D~~~v~~aL~~~~~~~la~r~~~~LSGGerQrv~iArALaQ~~~iLL 161 (258)
T COG1120 82 PQSPSAPFGLTVYELVLLGRYPHLGLFGRPSKEDEEIVEEALELLGLEHLADRPVDELSGGERQRVLIARALAQETPILL 161 (258)
T ss_pred ccCCCCCCCcEEeehHhhcCCcccccccCCCHhHHHHHHHHHHHhCcHHHhcCcccccChhHHHHHHHHHHHhcCCCEEE
Confidence 4443 223345655543221 1134566678999999999 78999999999999999998 99
Q ss_pred ecCCCCCCCHHHHHHHHHH---hcc--cCcEEEEccCCCHHHHHHHHhccccccceEEEeecCCC
Q 018394 148 STLPLTHVDEKLCYQILHE---YKI--HNAEVLFREDATVDDLIDVIEGNRKYMKCVYVYNKIDV 207 (356)
Q Consensus 148 ~DEp~~~LD~~~~~~il~~---l~~--~~~~i~~thd~~~~~~~~~i~~~~~~~p~i~v~NK~Dl 207 (356)
+||||+.||.....++|+. +.. +.|+|++.||.+.+-. |+..+++++...+
T Consensus 162 LDEPTs~LDi~~Q~evl~ll~~l~~~~~~tvv~vlHDlN~A~r---------yad~~i~lk~G~i 217 (258)
T COG1120 162 LDEPTSHLDIAHQIEVLELLRDLNREKGLTVVMVLHDLNLAAR---------YADHLILLKDGKI 217 (258)
T ss_pred eCCCccccCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHH---------hCCEEEEEECCeE
Confidence 9999999999986555554 442 3589999999876532 5678888876544
No 23
>COG0536 Obg Predicted GTPase [General function prediction only]
Probab=99.92 E-value=1.8e-25 Score=207.71 Aligned_cols=171 Identities=30% Similarity=0.423 Sum_probs=137.2
Q ss_pred CCCeEEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCccccccccccccceEEEECC-EeecccCccccccccccCcccc
Q 018394 9 GEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYND-TKIQLLDLPGIIEGASEGKGRG 87 (356)
Q Consensus 9 ~~s~~v~~~~g~~v~LvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g-~~i~~~D~pGl~~~~~~~~~~~ 87 (356)
.+.|++.- -+-|+|||.||||||||+++++.+.+.|++|||||+.|+-|.+.+.+ ..+.+.|.|||+++++++.|++
T Consensus 151 ~v~LELKl--lADVGLVG~PNaGKSTlls~vS~AkPKIadYpFTTL~PnLGvV~~~~~~sfv~ADIPGLIEGAs~G~GLG 228 (369)
T COG0536 151 DLRLELKL--LADVGLVGLPNAGKSTLLSAVSAAKPKIADYPFTTLVPNLGVVRVDGGESFVVADIPGLIEGASEGVGLG 228 (369)
T ss_pred EEEEEEee--ecccccccCCCCcHHHHHHHHhhcCCcccCCccccccCcccEEEecCCCcEEEecCcccccccccCCCcc
Confidence 55666666 67899999999999999999999999999999999999999999844 5588999999999999999999
Q ss_pred ccccccccchhHHHHHHhcCC-----hHHHHHHHHHHHHHccCccccccCcccccceeccceeeeecCCCCCCCHHHHHH
Q 018394 88 RQVIAVSKSSDIVLMVLDASK-----SEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQ 162 (356)
Q Consensus 88 ~~~~~~~~~~d~i~~v~d~~~-----~~~~~~~i~~~L~~~~i~l~~~~~~lS~g~~qr~~ial~~DEp~~~LD~~~~~~ 162 (356)
.+|+..++.+.++++++|.+. +.++.+.+..+|+.++.
T Consensus 229 ~~FLrHIERt~vL~hviD~s~~~~~dp~~~~~~i~~EL~~Y~~------------------------------------- 271 (369)
T COG0536 229 LRFLRHIERTRVLLHVIDLSPIDGRDPIEDYQTIRNELEKYSP------------------------------------- 271 (369)
T ss_pred HHHHHHHHhhheeEEEEecCcccCCCHHHHHHHHHHHHHHhhH-------------------------------------
Confidence 999999999999999998764 34455555655554321
Q ss_pred HHHHhcccCcEEEEccCCCHHHHHHHHhccccccceEEEeecCCCC-ChhhHHHHhc-------CCCEEEeccccccchH
Q 018394 163 ILHEYKIHNAEVLFREDATVDDLIDVIEGNRKYMKCVYVYNKIDVI-GIDDVDKLAR-------QPNSVVISCNLKLNLD 234 (356)
Q Consensus 163 il~~l~~~~~~i~~thd~~~~~~~~~i~~~~~~~p~i~v~NK~Dl~-~~~~~~~l~~-------~~~~i~iSa~~~~~l~ 234 (356)
....+|.++|+||+|++ +.++.+.+.. +...++|||.+++|++
T Consensus 272 -----------------------------~L~~K~~ivv~NKiD~~~~~e~~~~~~~~l~~~~~~~~~~~ISa~t~~g~~ 322 (369)
T COG0536 272 -----------------------------KLAEKPRIVVLNKIDLPLDEEELEELKKALAEALGWEVFYLISALTREGLD 322 (369)
T ss_pred -----------------------------HhccCceEEEEeccCCCcCHHHHHHHHHHHHHhcCCCcceeeehhcccCHH
Confidence 12247999999999955 5555444321 2223349999999999
Q ss_pred HHHHHHHHHhCce
Q 018394 235 RLLARMWEEMGLV 247 (356)
Q Consensus 235 ~L~~~i~~~l~~i 247 (356)
.|...+++.+...
T Consensus 323 ~L~~~~~~~l~~~ 335 (369)
T COG0536 323 ELLRALAELLEET 335 (369)
T ss_pred HHHHHHHHHHHHh
Confidence 9999999888654
No 24
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=99.92 E-value=9.2e-25 Score=198.83 Aligned_cols=169 Identities=22% Similarity=0.220 Sum_probs=127.2
Q ss_pred CCCCeEEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCccccccccccccceEEEECCEeecccCccccccccccCcccc
Q 018394 8 AGEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRG 87 (356)
Q Consensus 8 ~~~s~~v~~~~g~~v~LvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~~D~pGl~~~~~~~~~~~ 87 (356)
.+++|++++ |++++|+||||||||||+++|+|...| ..|++.+.|.++.-... ...++++
T Consensus 21 ~~i~l~v~~--G~~~~iiGPNGaGKSTLlK~iLGll~p-----------~~G~i~~~g~~~~~~~~-------~~~IgYV 80 (254)
T COG1121 21 EDISLSVEK--GEITALIGPNGAGKSTLLKAILGLLKP-----------SSGEIKIFGKPVRKRRK-------RLRIGYV 80 (254)
T ss_pred eccEEEEcC--CcEEEEECCCCCCHHHHHHHHhCCCcC-----------CcceEEEcccccccccc-------CCeEEEc
Confidence 689999999 889999999999999999999998877 89999999987643321 1123444
Q ss_pred cccccc-----ccchhHHHHHHhcC------ChHHHHHHHHHHHHHccC--ccccccCcccccceecccee---------
Q 018394 88 RQVIAV-----SKSSDIVLMVLDAS------KSEGHRQILTKELEAVGL--RLNKRPPQIYFKKKKTGGIS--------- 145 (356)
Q Consensus 88 ~~~~~~-----~~~~d~i~~v~d~~------~~~~~~~~i~~~L~~~~i--~l~~~~~~lS~g~~qr~~ia--------- 145 (356)
+|.... +...|++....... ....+.+.+.+.|+++|+ ..+++..+|||||+||+-||
T Consensus 81 PQ~~~~d~~fP~tV~d~V~~g~~~~~g~~~~~~~~d~~~v~~aL~~Vgm~~~~~r~i~~LSGGQ~QRV~lARAL~~~p~l 160 (254)
T COG1121 81 PQKSSVDRSFPITVKDVVLLGRYGKKGWFRRLNKKDKEKVDEALERVGMEDLRDRQIGELSGGQKQRVLLARALAQNPDL 160 (254)
T ss_pred CcccccCCCCCcCHHHHHHccCcccccccccccHHHHHHHHHHHHHcCchhhhCCcccccCcHHHHHHHHHHHhccCCCE
Confidence 443211 12234443321111 123456889999999999 78999999999999999888
Q ss_pred eeecCCCCCCCHHH---HHHHHHHhcc-cCcEEEEccCCCHHHHHHHHhccccccceEEEeecC
Q 018394 146 FNSTLPLTHVDEKL---CYQILHEYKI-HNAEVLFREDATVDDLIDVIEGNRKYMKCVYVYNKI 205 (356)
Q Consensus 146 l~~DEp~~~LD~~~---~~~il~~l~~-~~~~i~~thd~~~~~~~~~i~~~~~~~p~i~v~NK~ 205 (356)
+++||||+++|+.. +.++|++++. +.+++++|||.... ..+.+.++++||-
T Consensus 161 llLDEP~~gvD~~~~~~i~~lL~~l~~eg~tIl~vtHDL~~v---------~~~~D~vi~Ln~~ 215 (254)
T COG1121 161 LLLDEPFTGVDVAGQKEIYDLLKELRQEGKTVLMVTHDLGLV---------MAYFDRVICLNRH 215 (254)
T ss_pred EEecCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCcHHh---------HhhCCEEEEEcCe
Confidence 99999999999987 5566667764 56999999997643 2256888888874
No 25
>COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.91 E-value=1.6e-24 Score=183.52 Aligned_cols=169 Identities=22% Similarity=0.225 Sum_probs=137.7
Q ss_pred CCCCeEEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCccccccccccccceEEEECCEeecccCccccccccccCcccc
Q 018394 8 AGEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRG 87 (356)
Q Consensus 8 ~~~s~~v~~~~g~~v~LvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~~D~pGl~~~~~~~~~~~ 87 (356)
++++|.|.. |+.++||||+||||||||-.|+|++.+ .+|.+.+.|+++.-+|--+........++.+
T Consensus 27 ~~V~L~v~~--Ge~vaiVG~SGSGKSTLl~vlAGLd~~-----------ssGeV~l~G~~L~~ldEd~rA~~R~~~vGfV 93 (228)
T COG4181 27 KGVELVVKR--GETVAIVGPSGSGKSTLLAVLAGLDDP-----------SSGEVRLLGQPLHKLDEDARAALRARHVGFV 93 (228)
T ss_pred ecceEEecC--CceEEEEcCCCCcHHhHHHHHhcCCCC-----------CCceEEEcCcchhhcCHHHHHHhhccceeEE
Confidence 589999999 889999999999999999999999977 8999999999998888666554445667888
Q ss_pred ccccccccchhHHHHHH-----hcCChHHHHHHHHHHHHHccC--ccccccCcccccceecccee---------eeecCC
Q 018394 88 RQVIAVSKSSDIVLMVL-----DASKSEGHRQILTKELEAVGL--RLNKRPPQIYFKKKKTGGIS---------FNSTLP 151 (356)
Q Consensus 88 ~~~~~~~~~~d~i~~v~-----d~~~~~~~~~~i~~~L~~~~i--~l~~~~~~lS~g~~qr~~ia---------l~~DEp 151 (356)
+|....+++.+.+..|. +.-...........+|+.+|+ ++..+|.+||+|++||++|| +++|||
T Consensus 94 FQSF~Lip~ltAlENV~lPleL~ge~~~~~~~~A~~lL~~vGLg~Rl~HyP~qLSGGEQQRVAiARAfa~~P~vLfADEP 173 (228)
T COG4181 94 FQSFHLIPNLTALENVALPLELRGESSADSRAGAKALLEAVGLGKRLTHYPAQLSGGEQQRVALARAFAGRPDVLFADEP 173 (228)
T ss_pred EEeeeccccchhhhhccchhhhcCCccccHHHHHHHHHHHhCcccccccCccccCchHHHHHHHHHHhcCCCCEEeccCC
Confidence 88888888877766552 221122345568899999999 89999999999999999998 899999
Q ss_pred CCCCCHHH---HHHHHHHhcc--cCcEEEEccCCCHHHHHHHH
Q 018394 152 LTHVDEKL---CYQILHEYKI--HNAEVLFREDATVDDLIDVI 189 (356)
Q Consensus 152 ~~~LD~~~---~~~il~~l~~--~~~~i~~thd~~~~~~~~~i 189 (356)
|.+||.++ +.++|-.+.. +.|.|++|||..++..|+..
T Consensus 174 TGNLD~~Tg~~iaDLlF~lnre~G~TlVlVTHD~~LA~Rc~R~ 216 (228)
T COG4181 174 TGNLDRATGDKIADLLFALNRERGTTLVLVTHDPQLAARCDRQ 216 (228)
T ss_pred CCCcchhHHHHHHHHHHHHhhhcCceEEEEeCCHHHHHhhhhe
Confidence 99999987 4455555543 34899999999888877643
No 26
>COG0486 ThdF Predicted GTPase [General function prediction only]
Probab=99.91 E-value=2.5e-25 Score=215.15 Aligned_cols=185 Identities=28% Similarity=0.298 Sum_probs=137.3
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHcCC-CCccccccccccccceEEEECCEeecccCccccccccc----cCcccccccccc
Q 018394 19 HGRVALIGFPSVGKSTLLTLLTGTH-SEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGAS----EGKGRGRQVIAV 93 (356)
Q Consensus 19 g~~v~LvG~~gaGKSTLln~L~g~~-~~vs~~p~TT~~~~~G~i~~~g~~i~~~D~pGl~~~~~----~~~~~~~~~~~~ 93 (356)
|..++|+|+||||||||||+|++.. +.|+++||||||..+..+.++|.++.++||+|+++... .|+. +....
T Consensus 217 G~kvvIiG~PNvGKSSLLNaL~~~d~AIVTdI~GTTRDviee~i~i~G~pv~l~DTAGiRet~d~VE~iGIe---Rs~~~ 293 (454)
T COG0486 217 GLKVVIIGRPNVGKSSLLNALLGRDRAIVTDIAGTTRDVIEEDINLNGIPVRLVDTAGIRETDDVVERIGIE---RAKKA 293 (454)
T ss_pred CceEEEECCCCCcHHHHHHHHhcCCceEecCCCCCccceEEEEEEECCEEEEEEecCCcccCccHHHHHHHH---HHHHH
Confidence 6899999999999999999999998 57999999999999999999999999999999985431 2222 22334
Q ss_pred ccchhHHHHHHhcCChHHHHHHHHHHHHHccCccccccCcccccceeccceeeeecCCCCCCCHHHHHHHHHHhcccCcE
Q 018394 94 SKSSDIVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNAE 173 (356)
Q Consensus 94 ~~~~d~i~~v~d~~~~~~~~~~i~~~L~~~~i~l~~~~~~lS~g~~qr~~ial~~DEp~~~LD~~~~~~il~~l~~~~~~ 173 (356)
+++||++++++|++.+....+.
T Consensus 294 i~~ADlvL~v~D~~~~~~~~d~---------------------------------------------------------- 315 (454)
T COG0486 294 IEEADLVLFVLDASQPLDKEDL---------------------------------------------------------- 315 (454)
T ss_pred HHhCCEEEEEEeCCCCCchhhH----------------------------------------------------------
Confidence 5778888888887764111110
Q ss_pred EEEccCCCHHHHHHHHhccccccceEEEeecCCCCChhhHHHH--hcCCCEEEeccccccchHHHHHHHHHHhCceEEEe
Q 018394 174 VLFREDATVDDLIDVIEGNRKYMKCVYVYNKIDVIGIDDVDKL--ARQPNSVVISCNLKLNLDRLLARMWEEMGLVRVYT 251 (356)
Q Consensus 174 i~~thd~~~~~~~~~i~~~~~~~p~i~v~NK~Dl~~~~~~~~l--~~~~~~i~iSa~~~~~l~~L~~~i~~~l~~i~~~~ 251 (356)
.+++ .....+|+++|+||+|+........+ ......+.+||+++.|++.|.++|.+.+...
T Consensus 316 ----------~~~~---~~~~~~~~i~v~NK~DL~~~~~~~~~~~~~~~~~i~iSa~t~~Gl~~L~~~i~~~~~~~---- 378 (454)
T COG0486 316 ----------ALIE---LLPKKKPIIVVLNKADLVSKIELESEKLANGDAIISISAKTGEGLDALREAIKQLFGKG---- 378 (454)
T ss_pred ----------HHHH---hcccCCCEEEEEechhcccccccchhhccCCCceEEEEecCccCHHHHHHHHHHHHhhc----
Confidence 0011 01224799999999999876554433 2333589999999999999999999887643
Q ss_pred CCCCCCCCCCccEEeecCCCCCCHHHHHHHHHHhHh
Q 018394 252 KPQGQQPDFTEPVVLSVDRGGCTVEDFCNHIHRSLV 287 (356)
Q Consensus 252 ~~~~~~p~~~~~~~~~~~r~g~~v~~~a~~ih~~l~ 287 (356)
.+..+..++.+.||-..++.+.+++...+.
T Consensus 379 ------~~~~~~~~i~~~Rh~~~L~~a~~~l~~a~~ 408 (454)
T COG0486 379 ------LGNQEGLFLSNLRHIQLLEQAAEHLEDALQ 408 (454)
T ss_pred ------ccccccceeecHHHHHHHHHHHHHHHHHHh
Confidence 123334456666998888888888776544
No 27
>COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=99.91 E-value=1.1e-24 Score=194.70 Aligned_cols=188 Identities=20% Similarity=0.215 Sum_probs=147.9
Q ss_pred CCCCeEEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCccccccccccccceEEEECCEeecccCccccccccccCcccc
Q 018394 8 AGEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRG 87 (356)
Q Consensus 8 ~~~s~~v~~~~g~~v~LvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~~D~pGl~~~~~~~~~~~ 87 (356)
+++||++.+ |++++||||||||||||||+|||...| +.|++.++|.+|+-+.... -++.|+.+.
T Consensus 21 ~~Vsl~v~~--Gei~~LIGPNGAGKTTlfNlitG~~~P-----------~~G~v~~~G~~it~l~p~~---iar~Gi~RT 84 (250)
T COG0411 21 NDVSLEVRP--GEIVGLIGPNGAGKTTLFNLITGFYKP-----------SSGTVIFRGRDITGLPPHR---IARLGIART 84 (250)
T ss_pred eceeEEEcC--CeEEEEECCCCCCceeeeeeecccccC-----------CCceEEECCcccCCCCHHH---HHhccceee
Confidence 589999999 889999999999999999999999988 8999999999887654322 245688888
Q ss_pred ccccccccchhHHHHHHhcC-----------------ChHHHHHHHHHHHHHccC--ccccccCcccccceecccee---
Q 018394 88 RQVIAVSKSSDIVLMVLDAS-----------------KSEGHRQILTKELEAVGL--RLNKRPPQIYFKKKKTGGIS--- 145 (356)
Q Consensus 88 ~~~~~~~~~~d~i~~v~d~~-----------------~~~~~~~~i~~~L~~~~i--~l~~~~~~lS~g~~qr~~ia--- 145 (356)
+|....|++..++..++-+. ...+..+.+.++|+.+|+ ..+.+..+||.|+++++.||
T Consensus 85 FQ~~rlF~~lTVlENv~va~~~~~~~~~~l~~~~~~~~e~~~~e~A~~~Le~vgL~~~a~~~A~~LsyG~qR~LEIArAL 164 (250)
T COG0411 85 FQITRLFPGLTVLENVAVGAHARLGLSGLLGRPRARKEEREARERARELLEFVGLGELADRPAGNLSYGQQRRLEIARAL 164 (250)
T ss_pred cccccccCCCcHHHHHHHHhhhhhhhhhhhccccchhhHHHHHHHHHHHHHHcCCchhhcchhhcCChhHhHHHHHHHHH
Confidence 99988888866665443220 122345678899999999 78999999999999999998
Q ss_pred ------eeecCCCCCCCHHHHHH---HHHHhcc-c-CcEEEEccCCCHHHHHHHHhccccccceEEEeecCCCCChhhHH
Q 018394 146 ------FNSTLPLTHVDEKLCYQ---ILHEYKI-H-NAEVLFREDATVDDLIDVIEGNRKYMKCVYVYNKIDVIGIDDVD 214 (356)
Q Consensus 146 ------l~~DEp~~~LD~~~~~~---il~~l~~-~-~~~i~~thd~~~~~~~~~i~~~~~~~p~i~v~NK~Dl~~~~~~~ 214 (356)
+++|||.+|+.+....+ ++++++. . .+++++.||+++.- ..+..|+|++-...+.+...+
T Consensus 165 a~~P~lLLLDEPaAGln~~e~~~l~~~i~~i~~~~g~tillIEHdM~~Vm---------~l~dri~Vl~~G~~IAeG~P~ 235 (250)
T COG0411 165 ATQPKLLLLDEPAAGLNPEETEELAELIRELRDRGGVTILLIEHDMKLVM---------GLADRIVVLNYGEVIAEGTPE 235 (250)
T ss_pred hcCCCEEEecCccCCCCHHHHHHHHHHHHHHHhcCCcEEEEEEeccHHHh---------hhccEEEeccCCcCcccCCHH
Confidence 99999999999987554 4555554 2 58999999987532 135889999988877665555
Q ss_pred HHhcCC
Q 018394 215 KLARQP 220 (356)
Q Consensus 215 ~l~~~~ 220 (356)
++.+.+
T Consensus 236 eV~~dp 241 (250)
T COG0411 236 EVRNNP 241 (250)
T ss_pred HHhcCH
Confidence 555544
No 28
>cd01666 TGS_DRG_C TGS_DRG_C: DRG (developmentally regulated GTP-binding protein) represents a family of GTP-binding proteins that includes two members, DRG1 and DRG2. DRG1 and DRG2 have a C-terminal TGS domain (named after the ThrRS, GTPase, and SpoT proteins where it occurs) with a predominantly beta-sheet structure. The function of TGS is unknown but its presence in two types of regulatory proteins (the DRG GTPases and guanosine polyphosphate phosphohydrolases/synthetases) suggests a ligand (most likely nucleotide)-binding, regulatory role.
Probab=99.91 E-value=2.4e-24 Score=160.70 Aligned_cols=75 Identities=69% Similarity=1.194 Sum_probs=72.8
Q ss_pred ceEEEeCCCCCCCCCCccEEeecCCCCCCHHHHHHHHHHhHhhcCcEeEEeccCCccCCcccCCCceeCCCCeEEEEe
Q 018394 246 LVRVYTKPQGQQPDFTEPVVLSVDRGGCTVEDFCNHIHRSLVKDVKYVLVWGTSARHYPQHCGLGHVLQDEDVVQIVK 323 (356)
Q Consensus 246 ~i~~~~~~~~~~p~~~~~~~~~~~r~g~~v~~~a~~ih~~l~~~f~~a~~wg~s~~~~~~~vg~~~~l~d~Dvv~i~~ 323 (356)
++|+|||++|..||+++|+++++ |+|+.|+|+++|+++.+.|+||++||.|+++.||+||+||+|+|||||+|++
T Consensus 1 lirvytk~~g~~~d~~~~liL~~---GaTV~D~a~~iH~di~~~f~~A~v~g~s~~~~gq~Vgl~~~L~d~DvVeI~~ 75 (75)
T cd01666 1 LIRVYTKPKGQEPDFDEPVILRR---GSTVEDVCNKIHKDLVKQFKYALVWGSSVKHSPQRVGLDHVLEDEDVVQIVK 75 (75)
T ss_pred CEEEEeCCCCCCCCCCCCEEECC---CCCHHHHHHHHHHHHHHhCCeeEEeccCCcCCCeECCCCCEecCCCEEEEeC
Confidence 58999999999999999999999 9999999999999999999999999999999999999999999999999984
No 29
>PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B ....
Probab=99.91 E-value=1.6e-25 Score=191.13 Aligned_cols=148 Identities=30% Similarity=0.442 Sum_probs=99.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCccccccccccccceEEEECCEeecccCccccccccccCc-cccccccccccchhH
Q 018394 21 RVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGK-GRGRQVIAVSKSSDI 99 (356)
Q Consensus 21 ~v~LvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~~D~pGl~~~~~~~~-~~~~~~~~~~~~~d~ 99 (356)
.|+|+|.||||||||||+|||....++||||||+++..|.+.+.+.++.++|+||+........ .+...........|+
T Consensus 2 ~ialvG~PNvGKStLfN~Ltg~~~~v~n~pG~Tv~~~~g~~~~~~~~~~lvDlPG~ysl~~~s~ee~v~~~~l~~~~~D~ 81 (156)
T PF02421_consen 2 RIALVGNPNVGKSTLFNALTGAKQKVGNWPGTTVEKKEGIFKLGDQQVELVDLPGIYSLSSKSEEERVARDYLLSEKPDL 81 (156)
T ss_dssp EEEEEESTTSSHHHHHHHHHTTSEEEEESTTSSSEEEEEEEEETTEEEEEEE----SSSSSSSHHHHHHHHHHHHTSSSE
T ss_pred EEEEECCCCCCHHHHHHHHHCCCceecCCCCCCeeeeeEEEEecCceEEEEECCCcccCCCCCcHHHHHHHHHhhcCCCE
Confidence 6899999999999999999999999999999999999999999999999999999865322111 011111111244666
Q ss_pred HHHHHhcCChHHHHHHHHHHHHHccCccccccCcccccceeccceeeeecCCCCCCCHHHHHHHHHHhcccCcEEEEccC
Q 018394 100 VLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNAEVLFRED 179 (356)
Q Consensus 100 i~~v~d~~~~~~~~~~i~~~L~~~~i~l~~~~~~lS~g~~qr~~ial~~DEp~~~LD~~~~~~il~~l~~~~~~i~~thd 179 (356)
+++|+|++...+......+++
T Consensus 82 ii~VvDa~~l~r~l~l~~ql~----------------------------------------------------------- 102 (156)
T PF02421_consen 82 IIVVVDATNLERNLYLTLQLL----------------------------------------------------------- 102 (156)
T ss_dssp EEEEEEGGGHHHHHHHHHHHH-----------------------------------------------------------
T ss_pred EEEECCCCCHHHHHHHHHHHH-----------------------------------------------------------
Confidence 666666654322211111100
Q ss_pred CCHHHHHHHHhccccccceEEEeecCCCCChh----hHHHHhc--CCCEEEeccccccchHHHHHHH
Q 018394 180 ATVDDLIDVIEGNRKYMKCVYVYNKIDVIGID----DVDKLAR--QPNSVVISCNLKLNLDRLLARM 240 (356)
Q Consensus 180 ~~~~~~~~~i~~~~~~~p~i~v~NK~Dl~~~~----~~~~l~~--~~~~i~iSa~~~~~l~~L~~~i 240 (356)
...+|+++|+||+|..... +.+.+.+ ..+++++||.++.|+++|.++|
T Consensus 103 -------------e~g~P~vvvlN~~D~a~~~g~~id~~~Ls~~Lg~pvi~~sa~~~~g~~~L~~~I 156 (156)
T PF02421_consen 103 -------------ELGIPVVVVLNKMDEAERKGIEIDAEKLSERLGVPVIPVSARTGEGIDELKDAI 156 (156)
T ss_dssp -------------HTTSSEEEEEETHHHHHHTTEEE-HHHHHHHHTS-EEEEBTTTTBTHHHHHHHH
T ss_pred -------------HcCCCEEEEEeCHHHHHHcCCEECHHHHHHHhCCCEEEEEeCCCcCHHHHHhhC
Confidence 1135999999999986432 1233332 2469999999999999999876
No 30
>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.91 E-value=4.8e-24 Score=186.70 Aligned_cols=164 Identities=20% Similarity=0.152 Sum_probs=129.1
Q ss_pred CCCCeEEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCccccccccccccceEEEECCEeecc--cCccccccccccCcc
Q 018394 8 AGEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQL--LDLPGIIEGASEGKG 85 (356)
Q Consensus 8 ~~~s~~v~~~~g~~v~LvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~--~D~pGl~~~~~~~~~ 85 (356)
+++++++++ +.++||+||+||||||||++|..+.-.+ |++ ...|.|.++|.+|.- +|...++ ..+|
T Consensus 24 ~~i~l~i~~--~~VTAlIGPSGcGKST~LR~lNRmndl~---~~~---r~~G~v~~~g~ni~~~~~d~~~lR----r~vG 91 (253)
T COG1117 24 KDINLDIPK--NKVTALIGPSGCGKSTLLRCLNRMNDLI---PGA---RVEGEVLLDGKNIYDPKVDVVELR----RRVG 91 (253)
T ss_pred ccCceeccC--CceEEEECCCCcCHHHHHHHHHhhcccC---cCc---eEEEEEEECCeeccCCCCCHHHHH----HHhe
Confidence 799999999 7899999999999999999999887432 222 157999999998854 3554443 3568
Q ss_pred ccccccccccc--hhHHHHHHhcCCh--HHHHHHHHHHHHHccC------ccccccCcccccceecccee---------e
Q 018394 86 RGRQVIAVSKS--SDIVLMVLDASKS--EGHRQILTKELEAVGL------RLNKRPPQIYFKKKKTGGIS---------F 146 (356)
Q Consensus 86 ~~~~~~~~~~~--~d~i~~v~d~~~~--~~~~~~i~~~L~~~~i------~l~~~~~~lS~g~~qr~~ia---------l 146 (356)
+++|.+..|+- .|++.+.....+. ....+.++..|....+ ++++.+..|||||+||++|| |
T Consensus 92 MVFQkPnPFp~SIydNVayG~r~~g~~~~~ldeiVe~sLk~AaLWdEVKDrL~~sa~~LSGGQQQRLcIARalAv~PeVl 171 (253)
T COG1117 92 MVFQKPNPFPMSIYDNVAYGLRLHGIKDKELDEIVESSLKKAALWDEVKDRLHKSALGLSGGQQQRLCIARALAVKPEVL 171 (253)
T ss_pred eeccCCCCCCchHHHHHHHhHHhhccchHHHHHHHHHHHHHhHhHHHhHHHhhCCccCCChhHHHHHHHHHHHhcCCcEE
Confidence 88887766653 6778777655432 2334567777777666 68888999999999999998 9
Q ss_pred eecCCCCCCCHHH---HHHHHHHhcccCcEEEEccCCCHH
Q 018394 147 NSTLPLTHVDEKL---CYQILHEYKIHNAEVLFREDATVD 183 (356)
Q Consensus 147 ~~DEp~~~LD~~~---~~~il~~l~~~~~~i~~thd~~~~ 183 (356)
++||||++|||-+ +.+++.+++..-|++++||++.-+
T Consensus 172 LmDEPtSALDPIsT~kIEeLi~eLk~~yTIviVTHnmqQA 211 (253)
T COG1117 172 LMDEPTSALDPISTLKIEELITELKKKYTIVIVTHNMQQA 211 (253)
T ss_pred EecCcccccCchhHHHHHHHHHHHHhccEEEEEeCCHHHH
Confidence 9999999999976 788899999777999999997544
No 31
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=99.91 E-value=8.6e-24 Score=188.97 Aligned_cols=175 Identities=19% Similarity=0.209 Sum_probs=123.6
Q ss_pred CCCCeEEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCccccccccccccceEEEECCEeecccCccccccccccCcccc
Q 018394 8 AGEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRG 87 (356)
Q Consensus 8 ~~~s~~v~~~~g~~v~LvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~~D~pGl~~~~~~~~~~~ 87 (356)
+++||++.+ |+++||+|++|||||||.++|+|...+ ..|.|.++|.++.-..... .....+.++
T Consensus 24 ~~VS~~i~~--Ge~lgivGeSGsGKSTL~r~l~Gl~~p-----------~~G~I~~~G~~~~~~~~~~---~~~~~VQmV 87 (252)
T COG1124 24 NNVSLEIER--GETLGIVGESGSGKSTLARLLAGLEKP-----------SSGSILLDGKPLAPKKRAK---AFYRPVQMV 87 (252)
T ss_pred cceeEEecC--CCEEEEEcCCCCCHHHHHHHHhcccCC-----------CCceEEECCcccCccccch---hhccceeEE
Confidence 689999999 889999999999999999999999987 8999999997754321110 111223344
Q ss_pred ccccccc----cc-hhHHHHHHhcCChHHHHHHHHHHHHHccC---ccccccCcccccceecccee---------eeecC
Q 018394 88 RQVIAVS----KS-SDIVLMVLDASKSEGHRQILTKELEAVGL---RLNKRPPQIYFKKKKTGGIS---------FNSTL 150 (356)
Q Consensus 88 ~~~~~~~----~~-~d~i~~v~d~~~~~~~~~~i~~~L~~~~i---~l~~~~~~lS~g~~qr~~ia---------l~~DE 150 (356)
+|.+... +. -+.+--.+.........+++.++|+.+|+ +++++|.+|||||+||++|| +++||
T Consensus 88 FQDp~~SLnP~~tv~~~l~Epl~~~~~~~~~~~i~~~L~~VgL~~~~l~R~P~eLSGGQ~QRiaIARAL~~~PklLIlDE 167 (252)
T COG1124 88 FQDPYSSLNPRRTVGRILSEPLRPHGLSKSQQRIAELLDQVGLPPSFLDRRPHELSGGQRQRIAIARALIPEPKLLILDE 167 (252)
T ss_pred ecCCccccCcchhHHHHHhhhhccCCccHHHHHHHHHHHHcCCCHHHHhcCchhcChhHHHHHHHHHHhccCCCEEEecC
Confidence 4433211 11 12222222222222333458999999999 89999999999999999998 99999
Q ss_pred CCCCCCHHHHHHHHH---Hhcc--cCcEEEEccCCCHHHHHHHHhccccccceEEEeecCCC
Q 018394 151 PLTHVDEKLCYQILH---EYKI--HNAEVLFREDATVDDLIDVIEGNRKYMKCVYVYNKIDV 207 (356)
Q Consensus 151 p~~~LD~~~~~~il~---~l~~--~~~~i~~thd~~~~~~~~~i~~~~~~~p~i~v~NK~Dl 207 (356)
||++||.....++++ +++. +.+.+++|||..+.+.+ |+.+.|+...-+
T Consensus 168 ptSaLD~siQa~IlnlL~~l~~~~~lt~l~IsHdl~~v~~~---------cdRi~Vm~~G~i 220 (252)
T COG1124 168 PTSALDVSVQAQILNLLLELKKERGLTYLFISHDLALVEHM---------CDRIAVMDNGQI 220 (252)
T ss_pred chhhhcHHHHHHHHHHHHHHHHhcCceEEEEeCcHHHHHHH---------hhheeeeeCCeE
Confidence 999999987555544 4443 33999999998765432 356666665543
No 32
>COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=99.90 E-value=1e-23 Score=193.62 Aligned_cols=188 Identities=20% Similarity=0.231 Sum_probs=140.5
Q ss_pred CCCCeEEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCccccccccccccceEEEECCEeecccCccccccccccCcccc
Q 018394 8 AGEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRG 87 (356)
Q Consensus 8 ~~~s~~v~~~~g~~v~LvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~~D~pGl~~~~~~~~~~~ 87 (356)
.+++++|+. |+.+||+|||||||||||++|+|+..| +.|.|.++|..+ .|+.-+ ......+|..
T Consensus 19 ~di~l~i~~--Ge~vaLlGpSGaGKsTlLRiIAGLe~p-----------~~G~I~~~~~~l--~D~~~~-~~~~R~VGfv 82 (345)
T COG1118 19 DDISLDIKS--GELVALLGPSGAGKSTLLRIIAGLETP-----------DAGRIRLNGRVL--FDVSNL-AVRDRKVGFV 82 (345)
T ss_pred ccceeeecC--CcEEEEECCCCCcHHHHHHHHhCcCCC-----------CCceEEECCEec--cchhcc-chhhcceeEE
Confidence 478999998 889999999999999999999999988 899999999843 233321 2234567777
Q ss_pred ccccccccc---hhHHHHHHhcC----ChHHHHHHHHHHHHHccC--ccccccCcccccceecccee---------eeec
Q 018394 88 RQVIAVSKS---SDIVLMVLDAS----KSEGHRQILTKELEAVGL--RLNKRPPQIYFKKKKTGGIS---------FNST 149 (356)
Q Consensus 88 ~~~~~~~~~---~d~i~~v~d~~----~~~~~~~~i~~~L~~~~i--~l~~~~~~lS~g~~qr~~ia---------l~~D 149 (356)
+|....|+. +|+|.|-+... ...+...++.++|+.+.+ ..+++|.+||+||+||+++| +++|
T Consensus 83 FQ~YALF~HmtVa~NIAFGl~~~~~~p~~~~~r~rv~elL~lvqL~~la~ryP~QLSGGQrQRVALARALA~eP~vLLLD 162 (345)
T COG1118 83 FQHYALFPHMTVADNIAFGLKVRKERPSEAEIRARVEELLRLVQLEGLADRYPAQLSGGQRQRVALARALAVEPKVLLLD 162 (345)
T ss_pred EechhhcccchHHhhhhhcccccccCCChhhHHHHHHHHHHHhcccchhhcCchhcChHHHHHHHHHHHhhcCCCeEeec
Confidence 887766665 67777765433 123456678899999998 78999999999999999988 9999
Q ss_pred CCCCCCCHHH---HHHHHHHhc--ccCcEEEEccCCCHHHHHHHHhccccccceEEEeecCCCCChhhHHHHhcCC
Q 018394 150 LPLTHVDEKL---CYQILHEYK--IHNAEVLFREDATVDDLIDVIEGNRKYMKCVYVYNKIDVIGIDDVDKLARQP 220 (356)
Q Consensus 150 Ep~~~LD~~~---~~~il~~l~--~~~~~i~~thd~~~~~~~~~i~~~~~~~p~i~v~NK~Dl~~~~~~~~l~~~~ 220 (356)
||+++||... ++.+|+.+- .+.+.+++|||..+.-- -.+.++++|+.-+.......+++..|
T Consensus 163 EPf~ALDa~vr~~lr~wLr~~~~~~~~ttvfVTHD~eea~~---------ladrvvvl~~G~Ieqvg~p~ev~~~P 229 (345)
T COG1118 163 EPFGALDAKVRKELRRWLRKLHDRLGVTTVFVTHDQEEALE---------LADRVVVLNQGRIEQVGPPDEVYDHP 229 (345)
T ss_pred CCchhhhHHHHHHHHHHHHHHHHhhCceEEEEeCCHHHHHh---------hcceEEEecCCeeeeeCCHHHHhcCC
Confidence 9999999986 444555554 24589999999754321 24789999988654333334444443
No 33
>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]
Probab=99.90 E-value=3.3e-23 Score=177.18 Aligned_cols=158 Identities=18% Similarity=0.151 Sum_probs=118.8
Q ss_pred CCeEEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCccccccccccccceEEEECCEeecccCccccccccccCcccccc
Q 018394 10 EGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQ 89 (356)
Q Consensus 10 ~s~~v~~~~g~~v~LvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~~D~pGl~~~~~~~~~~~~~ 89 (356)
..|++.-..|+++||+||+|||||||||.++|...| .+|.|.++|.+....+. +.....+.+|
T Consensus 16 ~~fdl~v~~ge~vAi~GpSGaGKSTLLnLIAGF~~P-----------~~G~i~i~g~d~t~~~P------~~RPVSmlFQ 78 (231)
T COG3840 16 MRFDLTVPAGEIVAILGPSGAGKSTLLNLIAGFETP-----------ASGEILINGVDHTASPP------AERPVSMLFQ 78 (231)
T ss_pred EEEEEeecCCcEEEEECCCCccHHHHHHHHHhccCC-----------CCceEEEcCeecCcCCc------ccCChhhhhh
Confidence 345544444899999999999999999999999987 89999999998875432 2223444555
Q ss_pred ccccccchhHHHHHHhcCC-----hHHHHHHHHHHHHHccC--ccccccCcccccceecccee---------eeecCCCC
Q 018394 90 VIAVSKSSDIVLMVLDASK-----SEGHRQILTKELEAVGL--RLNKRPPQIYFKKKKTGGIS---------FNSTLPLT 153 (356)
Q Consensus 90 ~~~~~~~~d~i~~v~d~~~-----~~~~~~~i~~~L~~~~i--~l~~~~~~lS~g~~qr~~ia---------l~~DEp~~ 153 (356)
.-..|...++--.+--+.. ...+.+.++..+.++|+ ++++.|.+|||||+||+++| +++||||+
T Consensus 79 EnNLFaHLtV~qNigLGl~P~LkL~a~~r~~v~~aa~~vGl~~~~~RLP~~LSGGqRQRvALARclvR~~PilLLDEPFs 158 (231)
T COG3840 79 ENNLFAHLTVAQNIGLGLSPGLKLNAEQREKVEAAAAQVGLAGFLKRLPGELSGGQRQRVALARCLVREQPILLLDEPFS 158 (231)
T ss_pred ccccchhhhhhhhhcccCCcccccCHHHHHHHHHHHHHhChhhHhhhCccccCchHHHHHHHHHHHhccCCeEEecCchh
Confidence 5444544444333321111 24567889999999999 89999999999999999998 88999999
Q ss_pred CCCHHHHHHHHHHhc-----ccCcEEEEccCCCHHH
Q 018394 154 HVDEKLCYQILHEYK-----IHNAEVLFREDATVDD 184 (356)
Q Consensus 154 ~LD~~~~~~il~~l~-----~~~~~i~~thd~~~~~ 184 (356)
+||+....+++..+. ...|++|+||..+...
T Consensus 159 ALdP~LR~eMl~Lv~~l~~E~~~TllmVTH~~~Da~ 194 (231)
T COG3840 159 ALDPALRAEMLALVSQLCDERKMTLLMVTHHPEDAA 194 (231)
T ss_pred hcCHHHHHHHHHHHHHHHHhhCCEEEEEeCCHHHHH
Confidence 999988666655443 2459999999976543
No 34
>COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.90 E-value=1.8e-23 Score=186.37 Aligned_cols=162 Identities=22% Similarity=0.216 Sum_probs=125.3
Q ss_pred CCCCeEEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCccccccccccccceEEEECCEeecccCccccccccccCcccc
Q 018394 8 AGEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRG 87 (356)
Q Consensus 8 ~~~s~~v~~~~g~~v~LvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~~D~pGl~~~~~~~~~~~ 87 (356)
.+++|+|++ |+.++|+|++|+||||||++|.|+..| ..|.|.++|.++.-+.-..+.. .....|..
T Consensus 25 d~v~l~V~~--Gei~~iiGgSGsGKStlLr~I~Gll~P-----------~~GeI~i~G~~i~~ls~~~~~~-ir~r~Gvl 90 (263)
T COG1127 25 DGVDLDVPR--GEILAILGGSGSGKSTLLRLILGLLRP-----------DKGEILIDGEDIPQLSEEELYE-IRKRMGVL 90 (263)
T ss_pred cCceeeecC--CcEEEEECCCCcCHHHHHHHHhccCCC-----------CCCeEEEcCcchhccCHHHHHH-HHhheeEE
Confidence 589999999 889999999999999999999999988 8999999999876554333221 23446777
Q ss_pred ccccccccchhHHHHH---HhcC---ChHHHHHHHHHHHHHccC--c-cccccCcccccceecccee---------eeec
Q 018394 88 RQVIAVSKSSDIVLMV---LDAS---KSEGHRQILTKELEAVGL--R-LNKRPPQIYFKKKKTGGIS---------FNST 149 (356)
Q Consensus 88 ~~~~~~~~~~d~i~~v---~d~~---~~~~~~~~i~~~L~~~~i--~-l~~~~~~lS~g~~qr~~ia---------l~~D 149 (356)
+|..++|....+...| +... ....-.+.+...|+.+|+ . .+..|.+|||||++|+++| +++|
T Consensus 91 FQ~gALFssltV~eNVafplre~~~lp~~~i~~lv~~KL~~VGL~~~~~~~~PsELSGGM~KRvaLARAialdPell~~D 170 (263)
T COG1127 91 FQQGALFSSLTVFENVAFPLREHTKLPESLIRELVLMKLELVGLRGAAADLYPSELSGGMRKRVALARAIALDPELLFLD 170 (263)
T ss_pred eeccccccccchhHhhheehHhhccCCHHHHHHHHHHHHHhcCCChhhhhhCchhhcchHHHHHHHHHHHhcCCCEEEec
Confidence 8887777664444333 3221 222334566777899999 3 8899999999999999998 8999
Q ss_pred CCCCCCCHHH---HHHHHHHhc--ccCcEEEEccCCCHH
Q 018394 150 LPLTHVDEKL---CYQILHEYK--IHNAEVLFREDATVD 183 (356)
Q Consensus 150 Ep~~~LD~~~---~~~il~~l~--~~~~~i~~thd~~~~ 183 (356)
|||+||||-. +.+++..++ .+.|++++|||....
T Consensus 171 EPtsGLDPI~a~~~~~LI~~L~~~lg~T~i~VTHDl~s~ 209 (263)
T COG1127 171 EPTSGLDPISAGVIDELIRELNDALGLTVIMVTHDLDSL 209 (263)
T ss_pred CCCCCCCcchHHHHHHHHHHHHHhhCCEEEEEECChHHH
Confidence 9999999976 556666666 356999999997543
No 35
>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit. This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact
Probab=99.90 E-value=3.1e-23 Score=200.77 Aligned_cols=178 Identities=13% Similarity=0.124 Sum_probs=132.4
Q ss_pred CCCCeEEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCccccccccccccceEEEECCEeecccCccccccccccCcccc
Q 018394 8 AGEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRG 87 (356)
Q Consensus 8 ~~~s~~v~~~~g~~v~LvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~~D~pGl~~~~~~~~~~~ 87 (356)
+++||++.+ |++++|+|+|||||||||++|+|...| ..|.+.++|.++.-.+...+.......+++.
T Consensus 10 ~~vs~~i~~--Gei~~l~G~sGsGKSTLLr~L~Gl~~p-----------~~G~I~i~G~~i~~~~~~~~~~~rr~~i~~v 76 (363)
T TIGR01186 10 NDADLAIAK--GEIFVIMGLSGSGKSTTVRMLNRLIEP-----------TAGQIFIDGENIMKQSPVELREVRRKKIGMV 76 (363)
T ss_pred EeeEEEEcC--CCEEEEECCCCChHHHHHHHHhCCCCC-----------CceEEEECCEECCcCCHHHHHHHHhCcEEEE
Confidence 689999999 889999999999999999999999877 8999999999887555433321113456666
Q ss_pred ccccccccc---hhHHHHHHhcC--ChHHHHHHHHHHHHHccC--ccccccCcccccceecccee---------eeecCC
Q 018394 88 RQVIAVSKS---SDIVLMVLDAS--KSEGHRQILTKELEAVGL--RLNKRPPQIYFKKKKTGGIS---------FNSTLP 151 (356)
Q Consensus 88 ~~~~~~~~~---~d~i~~v~d~~--~~~~~~~~i~~~L~~~~i--~l~~~~~~lS~g~~qr~~ia---------l~~DEp 151 (356)
.|....+.. .+++.+..... ......+.+.++|+.++| .+++++.+||+||+||++|| +++|||
T Consensus 77 ~Q~~~l~~~~TV~eNi~~~~~~~~~~~~~~~~~~~~~l~~vgL~~~~~~~p~~LSGGq~QRV~lARAL~~~p~iLLlDEP 156 (363)
T TIGR01186 77 FQQFALFPHMTILQNTSLGPELLGWPEQERKEKALELLKLVGLEEYEHRYPDELSGGMQQRVGLARALAAEPDILLMDEA 156 (363)
T ss_pred ECCCcCCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCchhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCC
Confidence 666555544 45555443322 223345678889999999 78999999999999999998 999999
Q ss_pred CCCCCHHHHHHHHHH---hcc--cCcEEEEccCCCHHHHHHHHhccccccceEEEeecCCC
Q 018394 152 LTHVDEKLCYQILHE---YKI--HNAEVLFREDATVDDLIDVIEGNRKYMKCVYVYNKIDV 207 (356)
Q Consensus 152 ~~~LD~~~~~~il~~---l~~--~~~~i~~thd~~~~~~~~~i~~~~~~~p~i~v~NK~Dl 207 (356)
|++||+....++.+. +.. +.|++++|||.+.... .+..|++++..-+
T Consensus 157 ~saLD~~~r~~l~~~l~~l~~~~~~Tii~vTHd~~ea~~---------~~drI~vl~~G~i 208 (363)
T TIGR01186 157 FSALDPLIRDSMQDELKKLQATLQKTIVFITHDLDEAIR---------IGDRIVIMKAGEI 208 (363)
T ss_pred cccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHH---------hCCEEEEEeCCEE
Confidence 999999986555444 432 4699999999765321 1356677766543
No 36
>PRK12299 obgE GTPase CgtA; Reviewed
Probab=99.90 E-value=1.1e-23 Score=201.98 Aligned_cols=161 Identities=29% Similarity=0.462 Sum_probs=124.3
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHcCCCCccccccccccccceEEEE-CCEeecccCccccccccccCccccccccccccch
Q 018394 19 HGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHY-NDTKIQLLDLPGIIEGASEGKGRGRQVIAVSKSS 97 (356)
Q Consensus 19 g~~v~LvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~-~g~~i~~~D~pGl~~~~~~~~~~~~~~~~~~~~~ 97 (356)
-+.|+|||.||||||||||+|++..+.|++|||||++|+.|.+.+ ++.++.++|+||+++.++.+.++..+++..++.+
T Consensus 158 ~adVglVG~PNaGKSTLln~ls~a~~~va~ypfTT~~p~~G~v~~~~~~~~~i~D~PGli~ga~~~~gLg~~flrhie~a 237 (335)
T PRK12299 158 LADVGLVGLPNAGKSTLISAVSAAKPKIADYPFTTLHPNLGVVRVDDYKSFVIADIPGLIEGASEGAGLGHRFLKHIERT 237 (335)
T ss_pred cCCEEEEcCCCCCHHHHHHHHHcCCCccCCCCCceeCceEEEEEeCCCcEEEEEeCCCccCCCCccccHHHHHHHHhhhc
Confidence 568999999999999999999998888999999999999999999 5678999999999988888778888888888899
Q ss_pred hHHHHHHhcCChH--HHHHHHHHHHHHccCccccccCcccccceeccceeeeecCCCCCCCHHHHHHHHHHhcccCcEEE
Q 018394 98 DIVLMVLDASKSE--GHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNAEVL 175 (356)
Q Consensus 98 d~i~~v~d~~~~~--~~~~~i~~~L~~~~i~l~~~~~~lS~g~~qr~~ial~~DEp~~~LD~~~~~~il~~l~~~~~~i~ 175 (356)
+++++|+|++... ++.+.+.++|..+
T Consensus 238 ~vlI~ViD~s~~~s~e~~~~~~~EL~~~---------------------------------------------------- 265 (335)
T PRK12299 238 RLLLHLVDIEAVDPVEDYKTIRNELEKY---------------------------------------------------- 265 (335)
T ss_pred CEEEEEEcCCCCCCHHHHHHHHHHHHHh----------------------------------------------------
Confidence 9999999987532 1111121211110
Q ss_pred EccCCCHHHHHHHHhccccccceEEEeecCCCCChhhH-----HHHh-cC-CCEEEeccccccchHHHHHHHHHHhC
Q 018394 176 FREDATVDDLIDVIEGNRKYMKCVYVYNKIDVIGIDDV-----DKLA-RQ-PNSVVISCNLKLNLDRLLARMWEEMG 245 (356)
Q Consensus 176 ~thd~~~~~~~~~i~~~~~~~p~i~v~NK~Dl~~~~~~-----~~l~-~~-~~~i~iSa~~~~~l~~L~~~i~~~l~ 245 (356)
......+|+++|+||+|+...++. .... .. ..++++||+++.|+++|.+.+.+.+.
T Consensus 266 --------------~~~L~~kp~IIV~NKiDL~~~~~~~~~~~~~~~~~~~~~i~~iSAktg~GI~eL~~~L~~~l~ 328 (335)
T PRK12299 266 --------------SPELADKPRILVLNKIDLLDEEEEREKRAALELAALGGPVFLISAVTGEGLDELLRALWELLE 328 (335)
T ss_pred --------------hhhcccCCeEEEEECcccCCchhHHHHHHHHHHHhcCCCEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 000124699999999999754321 1111 12 35899999999999999999998774
No 37
>PRK12296 obgE GTPase CgtA; Reviewed
Probab=99.89 E-value=6.6e-24 Score=211.14 Aligned_cols=179 Identities=30% Similarity=0.412 Sum_probs=131.2
Q ss_pred CeEEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCccccccccccccceEEEECCEeecccCccccccccccCccccccc
Q 018394 11 GFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQV 90 (356)
Q Consensus 11 s~~v~~~~g~~v~LvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~~D~pGl~~~~~~~~~~~~~~ 90 (356)
-|++.- -..|+|||.||||||||||+|++..+.+++|||||++|+.|.+.+.+..+.++|+||++++++.+.+++.++
T Consensus 153 ~leLk~--~adV~LVG~PNAGKSTLln~Ls~akpkIadypfTTl~P~lGvv~~~~~~f~laDtPGliegas~g~gLg~~f 230 (500)
T PRK12296 153 VLELKS--VADVGLVGFPSAGKSSLISALSAAKPKIADYPFTTLVPNLGVVQAGDTRFTVADVPGLIPGASEGKGLGLDF 230 (500)
T ss_pred EEEecc--cceEEEEEcCCCCHHHHHHHHhcCCccccccCcccccceEEEEEECCeEEEEEECCCCccccchhhHHHHHH
Confidence 344444 678999999999999999999999888999999999999999999999999999999998877777777788
Q ss_pred cccccchhHHHHHHhcCCh------HHHHHHHHHHHHHccCccccccCcccccceeccceeeeecCCCCCCCHHHHHHHH
Q 018394 91 IAVSKSSDIVLMVLDASKS------EGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQIL 164 (356)
Q Consensus 91 ~~~~~~~d~i~~v~d~~~~------~~~~~~i~~~L~~~~i~l~~~~~~lS~g~~qr~~ial~~DEp~~~LD~~~~~~il 164 (356)
+..++.+|++++|+|++.. ..+.+.+.++|..+.-.+..
T Consensus 231 LrhieradvLv~VVD~s~~e~~rdp~~d~~~i~~EL~~y~~~l~~----------------------------------- 275 (500)
T PRK12296 231 LRHIERCAVLVHVVDCATLEPGRDPLSDIDALEAELAAYAPALDG----------------------------------- 275 (500)
T ss_pred HHHHHhcCEEEEEECCcccccccCchhhHHHHHHHHHHhhhcccc-----------------------------------
Confidence 8888889999999998642 22223333333222100000
Q ss_pred HHhcccCcEEEEccCCCHHHHHHHHhccccccceEEEeecCCCCChhhHH-----HHhc-CCCEEEeccccccchHHHHH
Q 018394 165 HEYKIHNAEVLFREDATVDDLIDVIEGNRKYMKCVYVYNKIDVIGIDDVD-----KLAR-QPNSVVISCNLKLNLDRLLA 238 (356)
Q Consensus 165 ~~l~~~~~~i~~thd~~~~~~~~~i~~~~~~~p~i~v~NK~Dl~~~~~~~-----~l~~-~~~~i~iSa~~~~~l~~L~~ 238 (356)
+.. ......+|+|+|+||+|++...++. .+.. ..+++++||.++.|+++|.+
T Consensus 276 --------------~~~--------~~~l~~kP~IVVlNKiDL~da~el~e~l~~~l~~~g~~Vf~ISA~tgeGLdEL~~ 333 (500)
T PRK12296 276 --------------DLG--------LGDLAERPRLVVLNKIDVPDARELAEFVRPELEARGWPVFEVSAASREGLRELSF 333 (500)
T ss_pred --------------cch--------hhhhcCCCEEEEEECccchhhHHHHHHHHHHHHHcCCeEEEEECCCCCCHHHHHH
Confidence 000 0011246999999999997543321 1222 13589999999999999999
Q ss_pred HHHHHhCceE
Q 018394 239 RMWEEMGLVR 248 (356)
Q Consensus 239 ~i~~~l~~i~ 248 (356)
.+.+.+...+
T Consensus 334 ~L~ell~~~r 343 (500)
T PRK12296 334 ALAELVEEAR 343 (500)
T ss_pred HHHHHHHhhh
Confidence 9988876544
No 38
>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]
Probab=99.89 E-value=4.7e-23 Score=194.67 Aligned_cols=182 Identities=19% Similarity=0.158 Sum_probs=134.0
Q ss_pred CCCCeEEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCccccccccccccceEEEECCEeecccCccccccccccCcccc
Q 018394 8 AGEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRG 87 (356)
Q Consensus 8 ~~~s~~v~~~~g~~v~LvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~~D~pGl~~~~~~~~~~~ 87 (356)
+++||++.+ |+++||+|||||||||||++|+|...| ++|.+.++|.++.-- .. .....++..
T Consensus 22 ~~vs~~i~~--Gei~gllG~NGAGKTTllk~l~gl~~p-----------~~G~i~i~G~~~~~~-~~----~~~~~igy~ 83 (293)
T COG1131 22 DGVSFEVEP--GEIFGLLGPNGAGKTTLLKILAGLLKP-----------TSGEILVLGYDVVKE-PA----KVRRRIGYV 83 (293)
T ss_pred eceeEEEcC--CeEEEEECCCCCCHHHHHHHHhCCcCC-----------CceEEEEcCEeCccC-HH----HHHhheEEE
Confidence 689999999 889999999999999999999999877 899999999876421 11 112234444
Q ss_pred ccccccc---cchhHHHHHHhcCCh--HHHHHHHHHHHHHccC--ccccccCcccccceecccee---------eeecCC
Q 018394 88 RQVIAVS---KSSDIVLMVLDASKS--EGHRQILTKELEAVGL--RLNKRPPQIYFKKKKTGGIS---------FNSTLP 151 (356)
Q Consensus 88 ~~~~~~~---~~~d~i~~v~d~~~~--~~~~~~i~~~L~~~~i--~l~~~~~~lS~g~~qr~~ia---------l~~DEp 151 (356)
.+....+ ...+.+-+....... ....+.+.++|+.+++ ..+++...||+||+||++|| +++|||
T Consensus 84 ~~~~~~~~~lT~~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~lS~G~kqrl~ia~aL~~~P~lliLDEP 163 (293)
T COG1131 84 PQEPSLYPELTVRENLEFFARLYGLSKEEAEERIEELLELFGLEDKANKKVRTLSGGMKQRLSIALALLHDPELLILDEP 163 (293)
T ss_pred ccCCCCCccccHHHHHHHHHHHhCCChhHHHHHHHHHHHHcCCchhhCcchhhcCHHHHHHHHHHHHHhcCCCEEEECCC
Confidence 4444333 345666666555443 2345688999999999 34778999999999999998 999999
Q ss_pred CCCCCHHHHH---HHHHHhcc-c-CcEEEEccCCCHHHHHHHHhccccccceEEEeecCCCCChhhHHHH
Q 018394 152 LTHVDEKLCY---QILHEYKI-H-NAEVLFREDATVDDLIDVIEGNRKYMKCVYVYNKIDVIGIDDVDKL 216 (356)
Q Consensus 152 ~~~LD~~~~~---~il~~l~~-~-~~~i~~thd~~~~~~~~~i~~~~~~~p~i~v~NK~Dl~~~~~~~~l 216 (356)
|++||+.... ++|+.+.. + .+++++||.++..+.+ ++.++++++.-+......+.+
T Consensus 164 t~GLDp~~~~~~~~~l~~l~~~g~~tvlissH~l~e~~~~---------~d~v~il~~G~~~~~g~~~~l 224 (293)
T COG1131 164 TSGLDPESRREIWELLRELAKEGGVTILLSTHILEEAEEL---------CDRVIILNDGKIIAEGTPEEL 224 (293)
T ss_pred CcCCCHHHHHHHHHHHHHHHhCCCcEEEEeCCcHHHHHHh---------CCEEEEEeCCEEEEeCCHHHH
Confidence 9999998854 55555554 3 4899999997655432 477888888766533333333
No 39
>COG1159 Era GTPase [General function prediction only]
Probab=99.89 E-value=8.2e-24 Score=194.32 Aligned_cols=236 Identities=25% Similarity=0.304 Sum_probs=154.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC-CCccccccccccccceEEEECCEeecccCccccccccc-cCccccccccccccchh
Q 018394 21 RVALIGFPSVGKSTLLTLLTGTH-SEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGAS-EGKGRGRQVIAVSKSSD 98 (356)
Q Consensus 21 ~v~LvG~~gaGKSTLln~L~g~~-~~vs~~p~TT~~~~~G~i~~~g~~i~~~D~pGl~~~~~-~~~~~~~~~~~~~~~~d 98 (356)
+|||||+||||||||+|.|.|.. +.||+.|.|||....|.+..+..++.++||||+....+ .+..+.......+..+|
T Consensus 8 fVaIiGrPNvGKSTLlN~l~G~KisIvS~k~QTTR~~I~GI~t~~~~QiIfvDTPGih~pk~~l~~~m~~~a~~sl~dvD 87 (298)
T COG1159 8 FVAIIGRPNVGKSTLLNALVGQKISIVSPKPQTTRNRIRGIVTTDNAQIIFVDTPGIHKPKHALGELMNKAARSALKDVD 87 (298)
T ss_pred EEEEEcCCCCcHHHHHHHHhcCceEeecCCcchhhhheeEEEEcCCceEEEEeCCCCCCcchHHHHHHHHHHHHHhccCc
Confidence 89999999999999999999998 68999999999999999999999999999999976532 22333444555677888
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHHccCccccccCcccccceeccceeeeecCCCCCCCHHHHHHHHHHhcccCcEEEEcc
Q 018394 99 IVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNAEVLFRE 178 (356)
Q Consensus 99 ~i~~v~d~~~~~~~~~~i~~~L~~~~i~l~~~~~~lS~g~~qr~~ial~~DEp~~~LD~~~~~~il~~l~~~~~~i~~th 178 (356)
++++++|+.......+ +.+ +
T Consensus 88 lilfvvd~~~~~~~~d-------------------------------------------~~i---l-------------- 107 (298)
T COG1159 88 LILFVVDADEGWGPGD-------------------------------------------EFI---L-------------- 107 (298)
T ss_pred EEEEEEeccccCCccH-------------------------------------------HHH---H--------------
Confidence 8888887754211100 001 1
Q ss_pred CCCHHHHHHHHhccccccceEEEeecCCCCChhh-HHHHh-------cCCCEEEeccccccchHHHHHHHHHHhCceEEE
Q 018394 179 DATVDDLIDVIEGNRKYMKCVYVYNKIDVIGIDD-VDKLA-------RQPNSVVISCNLKLNLDRLLARMWEEMGLVRVY 250 (356)
Q Consensus 179 d~~~~~~~~~i~~~~~~~p~i~v~NK~Dl~~~~~-~~~l~-------~~~~~i~iSa~~~~~l~~L~~~i~~~l~~i~~~ 250 (356)
+.+.. ...|.++++||+|...++. +..+. .+..++|+||++|.|++.|.+.+.+.|.....|
T Consensus 108 --------~~lk~--~~~pvil~iNKID~~~~~~~l~~~~~~~~~~~~f~~ivpiSA~~g~n~~~L~~~i~~~Lpeg~~~ 177 (298)
T COG1159 108 --------EQLKK--TKTPVILVVNKIDKVKPKTVLLKLIAFLKKLLPFKEIVPISALKGDNVDTLLEIIKEYLPEGPWY 177 (298)
T ss_pred --------HHHhh--cCCCeEEEEEccccCCcHHHHHHHHHHHHhhCCcceEEEeeccccCCHHHHHHHHHHhCCCCCCc
Confidence 11111 1359999999999886655 22221 245699999999999999999999999753221
Q ss_pred eCCCCCCCCCCccEEeecCCCCCCHHHHHHHHHHhHhhcCcEeEEeccCCccCCcccCCCceeC-CCCeEEEEe----cc
Q 018394 251 TKPQGQQPDFTEPVVLSVDRGGCTVEDFCNHIHRSLVKDVKYVLVWGTSARHYPQHCGLGHVLQ-DEDVVQIVK----KK 325 (356)
Q Consensus 251 ~~~~~~~p~~~~~~~~~~~r~g~~v~~~a~~ih~~l~~~f~~a~~wg~s~~~~~~~vg~~~~l~-d~Dvv~i~~----~~ 325 (356)
+++..+..+...---.+-+.+.+-..+.+.+.|+.- +. .|-.-. ..+.+.|.. .+
T Consensus 178 ---------yp~d~itD~~~rf~~aEiiREk~~~~l~eElPhsv~----Ve-------Ie~~~~~~~~~~~I~a~I~Ver 237 (298)
T COG1159 178 ---------YPEDQITDRPERFLAAEIIREKLLLLLREELPHSVA----VE-------IEEFEEREKGLLKIHATIYVER 237 (298)
T ss_pred ---------CChhhccCChHHHHHHHHHHHHHHHhcccccCceEE----EE-------EEEEEecCCCeEEEEEEEEEec
Confidence 222222211000011234456666677788888874 22 332222 244555543 34
Q ss_pred ccccc---CCCcccccC-CCccchh
Q 018394 326 EKEEG---GRGRFKSHS-NAPARIS 346 (356)
Q Consensus 326 ~~~~~---~~~~~~~~~-~~~~~~~ 346 (356)
.-|.. |++-..+|. +..||.+
T Consensus 238 ~sQK~IiIGk~G~~iK~IG~~AR~~ 262 (298)
T COG1159 238 ESQKGIIIGKNGAMIKKIGTAARKD 262 (298)
T ss_pred CCccceEECCCcHHHHHHHHHHHHH
Confidence 44442 666666666 6666654
No 40
>PRK12298 obgE GTPase CgtA; Reviewed
Probab=99.89 E-value=2.3e-23 Score=203.47 Aligned_cols=165 Identities=25% Similarity=0.388 Sum_probs=121.4
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHcCCCCccccccccccccceEEEECC-EeecccCccccccccccCccccccccccccch
Q 018394 19 HGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYND-TKIQLLDLPGIIEGASEGKGRGRQVIAVSKSS 97 (356)
Q Consensus 19 g~~v~LvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g-~~i~~~D~pGl~~~~~~~~~~~~~~~~~~~~~ 97 (356)
-..|+|||+||||||||||+|++..+.|++|||||+.|+.|.+.+.+ ..+.++||||+...++.+.++..+++..++.+
T Consensus 159 iadValVG~PNaGKSTLln~Lt~~k~~vs~~p~TT~~p~~Giv~~~~~~~i~~vDtPGi~~~a~~~~~Lg~~~l~~i~ra 238 (390)
T PRK12298 159 LADVGLLGLPNAGKSTFIRAVSAAKPKVADYPFTTLVPNLGVVRVDDERSFVVADIPGLIEGASEGAGLGIRFLKHLERC 238 (390)
T ss_pred cccEEEEcCCCCCHHHHHHHHhCCcccccCCCCCccCcEEEEEEeCCCcEEEEEeCCCccccccchhhHHHHHHHHHHhC
Confidence 45899999999999999999999988899999999999999999875 56999999999887776666667777777888
Q ss_pred hHHHHHHhcCChH--HHHHHHHHHHHHccCccccccCcccccceeccceeeeecCCCCCCCHHHHHHHHHHhcccCcEEE
Q 018394 98 DIVLMVLDASKSE--GHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNAEVL 175 (356)
Q Consensus 98 d~i~~v~d~~~~~--~~~~~i~~~L~~~~i~l~~~~~~lS~g~~qr~~ial~~DEp~~~LD~~~~~~il~~l~~~~~~i~ 175 (356)
|++++++|.+... ...+. ...+++++...
T Consensus 239 dvlL~VVD~s~~~~~d~~e~--------------------------------------------~~~l~~eL~~~----- 269 (390)
T PRK12298 239 RVLLHLIDIAPIDGSDPVEN--------------------------------------------ARIIINELEKY----- 269 (390)
T ss_pred CEEEEEeccCcccccChHHH--------------------------------------------HHHHHHHHHhh-----
Confidence 8888888865210 00010 11111111100
Q ss_pred EccCCCHHHHHHHHhccccccceEEEeecCCCCChhhH----HHHhc---C-CCEEEeccccccchHHHHHHHHHHhCc
Q 018394 176 FREDATVDDLIDVIEGNRKYMKCVYVYNKIDVIGIDDV----DKLAR---Q-PNSVVISCNLKLNLDRLLARMWEEMGL 246 (356)
Q Consensus 176 ~thd~~~~~~~~~i~~~~~~~p~i~v~NK~Dl~~~~~~----~~l~~---~-~~~i~iSa~~~~~l~~L~~~i~~~l~~ 246 (356)
......+|.++|+||+|+...+++ ..+.+ . ..++++||+++.|+++|.+.|.+.+..
T Consensus 270 --------------~~~L~~kP~IlVlNKiDl~~~~el~~~l~~l~~~~~~~~~Vi~ISA~tg~GIdeLl~~I~~~L~~ 334 (390)
T PRK12298 270 --------------SPKLAEKPRWLVFNKIDLLDEEEAEERAKAIVEALGWEGPVYLISAASGLGVKELCWDLMTFIEE 334 (390)
T ss_pred --------------hhhhcCCCEEEEEeCCccCChHHHHHHHHHHHHHhCCCCCEEEEECCCCcCHHHHHHHHHHHhhh
Confidence 000113699999999999755432 22222 1 258999999999999999999988754
No 41
>TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria.
Probab=99.89 E-value=7.6e-23 Score=196.91 Aligned_cols=177 Identities=19% Similarity=0.195 Sum_probs=129.9
Q ss_pred CCCCeEEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCccccccccccccceEEEECCEeecccCccccccccccCcccc
Q 018394 8 AGEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRG 87 (356)
Q Consensus 8 ~~~s~~v~~~~g~~v~LvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~~D~pGl~~~~~~~~~~~ 87 (356)
+++||++.+ |++++|+|+||||||||+++|+|...| ..|.+.++|.++.-++...+.. ....+++.
T Consensus 22 ~~vsl~i~~--Gei~gIiG~sGaGKSTLlr~I~gl~~p-----------~~G~I~i~G~~i~~~~~~~l~~-~r~~Ig~v 87 (343)
T TIGR02314 22 NNVSLHVPA--GQIYGVIGASGAGKSTLIRCVNLLERP-----------TSGSVIVDGQDLTTLSNSELTK-ARRQIGMI 87 (343)
T ss_pred eeeEEEEcC--CCEEEEECCCCCCHHHHHHHHhcCCCC-----------CceEEEECCEECCcCCHHHHHH-HhcCEEEE
Confidence 589999999 889999999999999999999999877 8999999999876443222211 12345666
Q ss_pred ccccccccc---hhHHHHHHhc--CChHHHHHHHHHHHHHccC--ccccccCcccccceecccee---------eeecCC
Q 018394 88 RQVIAVSKS---SDIVLMVLDA--SKSEGHRQILTKELEAVGL--RLNKRPPQIYFKKKKTGGIS---------FNSTLP 151 (356)
Q Consensus 88 ~~~~~~~~~---~d~i~~v~d~--~~~~~~~~~i~~~L~~~~i--~l~~~~~~lS~g~~qr~~ia---------l~~DEp 151 (356)
+|....+.. .+++.+.... .......+++.+.|+.+|+ ..++++.+||+||+||++|| +++|||
T Consensus 88 ~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~v~e~l~~vgL~~~~~~~~~~LSgGqkQRV~IARAL~~~P~iLLlDEP 167 (343)
T TIGR02314 88 FQHFNLLSSRTVFGNVALPLELDNTPKDEIKRKVTELLALVGLGDKHDSYPSNLSGGQKQRVAIARALASNPKVLLCDEA 167 (343)
T ss_pred ECCccccccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCC
Confidence 665544432 4555544332 2223345567889999999 78899999999999999998 999999
Q ss_pred CCCCCHHHHHHHHH---Hhcc--cCcEEEEccCCCHHHHHHHHhccccccceEEEeecCCC
Q 018394 152 LTHVDEKLCYQILH---EYKI--HNAEVLFREDATVDDLIDVIEGNRKYMKCVYVYNKIDV 207 (356)
Q Consensus 152 ~~~LD~~~~~~il~---~l~~--~~~~i~~thd~~~~~~~~~i~~~~~~~p~i~v~NK~Dl 207 (356)
|++||+.....+++ .+.. +.++|++||+++.... .+..+++++..-+
T Consensus 168 ts~LD~~t~~~i~~lL~~l~~~~g~tiiliTH~~~~v~~---------~~d~v~vl~~G~i 219 (343)
T TIGR02314 168 TSALDPATTQSILELLKEINRRLGLTILLITHEMDVVKR---------ICDCVAVISNGEL 219 (343)
T ss_pred cccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHH---------hCCEEEEEECCEE
Confidence 99999998655544 4432 4599999999765421 2456677765543
No 42
>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.89 E-value=2.8e-23 Score=191.23 Aligned_cols=163 Identities=18% Similarity=0.196 Sum_probs=135.5
Q ss_pred CCCCeEEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCccccccccccccceEEEECCEeecccCccccccccccCcccc
Q 018394 8 AGEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRG 87 (356)
Q Consensus 8 ~~~s~~v~~~~g~~v~LvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~~D~pGl~~~~~~~~~~~ 87 (356)
.++||+++. |++.+|+|-+|||||||+++|.++..| +.|.+.++|.++.-++.+.++........++
T Consensus 45 ~~~sl~v~~--GeIfViMGLSGSGKSTLvR~~NrLiep-----------t~G~ilv~g~di~~~~~~~Lr~~Rr~~~sMV 111 (386)
T COG4175 45 NDASLDVEE--GEIFVIMGLSGSGKSTLVRLLNRLIEP-----------TRGEILVDGKDIAKLSAAELRELRRKKISMV 111 (386)
T ss_pred ccceeeecC--CeEEEEEecCCCCHHHHHHHHhccCCC-----------CCceEEECCcchhcCCHHHHHHHHhhhhhhh
Confidence 588999999 889999999999999999999999866 8999999999998888888887777778889
Q ss_pred ccccccccchhHHHHHHh---c--CChHHHHHHHHHHHHHccC--ccccccCcccccceecccee---------eeecCC
Q 018394 88 RQVIAVSKSSDIVLMVLD---A--SKSEGHRQILTKELEAVGL--RLNKRPPQIYFKKKKTGGIS---------FNSTLP 151 (356)
Q Consensus 88 ~~~~~~~~~~d~i~~v~d---~--~~~~~~~~~i~~~L~~~~i--~l~~~~~~lS~g~~qr~~ia---------l~~DEp 151 (356)
+|...+++...++..+.. . ....+..+++.++|+.+|+ +.+++|.+|||||+||+|+| +++|||
T Consensus 112 FQ~FaLlPhrtVl~Nv~fGLev~Gv~~~er~~~a~~~l~~VgL~~~~~~yp~eLSGGMqQRVGLARAla~~~~IlLMDEa 191 (386)
T COG4175 112 FQSFALLPHRTVLENVAFGLEVQGVPKAEREERALEALELVGLEGYADKYPNELSGGMQQRVGLARALANDPDILLMDEA 191 (386)
T ss_pred hhhhccccchhHhhhhhcceeecCCCHHHHHHHHHHHHHHcCchhhhhcCcccccchHHHHHHHHHHHccCCCEEEecCc
Confidence 998888887666655432 2 2344566788999999999 89999999999999999998 899999
Q ss_pred CCCCCHHHHHHH---HHHhc--ccCcEEEEccCCCHH
Q 018394 152 LTHVDEKLCYQI---LHEYK--IHNAEVLFREDATVD 183 (356)
Q Consensus 152 ~~~LD~~~~~~i---l~~l~--~~~~~i~~thd~~~~ 183 (356)
||+|||-...++ |-++. ..+|++++|||.+++
T Consensus 192 FSALDPLIR~~mQdeLl~Lq~~l~KTIvFitHDLdEA 228 (386)
T COG4175 192 FSALDPLIRTEMQDELLELQAKLKKTIVFITHDLDEA 228 (386)
T ss_pred hhhcChHHHHHHHHHHHHHHHHhCCeEEEEecCHHHH
Confidence 999999653333 22232 467999999998654
No 43
>COG1137 YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only]
Probab=99.89 E-value=9.1e-24 Score=183.12 Aligned_cols=189 Identities=18% Similarity=0.226 Sum_probs=143.5
Q ss_pred CCCCCC-CCCCeEEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCccccccccccccceEEEECCEeecccCcccccccc
Q 018394 2 YQGSSG-AGEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGA 80 (356)
Q Consensus 2 y~~~~~-~~~s~~v~~~~g~~v~LvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~~D~pGl~~~~ 80 (356)
|+++.- +++||.|.+ |++|||+|||||||||.|++++|...+ .+|.+.++|.+++.+. +...+
T Consensus 14 y~kr~Vv~~Vsl~v~~--GEiVGLLGPNGAGKTT~Fymi~Glv~~-----------d~G~i~ld~~diT~lP---m~~RA 77 (243)
T COG1137 14 YKKRKVVNDVSLEVNS--GEIVGLLGPNGAGKTTTFYMIVGLVRP-----------DSGKILLDDEDITKLP---MHKRA 77 (243)
T ss_pred hCCeeeeeeeeEEEcC--CcEEEEECCCCCCceeEEEEEEEEEec-----------CCceEEECCcccccCC---hHHHh
Confidence 444432 689999999 889999999999999999999999877 8999999999987653 33456
Q ss_pred ccCccccccccccccc---hhHHHHHHhcCC----hHHHHHHHHHHHHHccC--ccccccCcccccceecccee------
Q 018394 81 SEGKGRGRQVIAVSKS---SDIVLMVLDASK----SEGHRQILTKELEAVGL--RLNKRPPQIYFKKKKTGGIS------ 145 (356)
Q Consensus 81 ~~~~~~~~~~~~~~~~---~d~i~~v~d~~~----~~~~~~~i~~~L~~~~i--~l~~~~~~lS~g~~qr~~ia------ 145 (356)
..|+++..|..+.|+. .|++..++.... ..++...+.++|+.+.| ..+.+..+||||+++|+.||
T Consensus 78 rlGigYLpQE~SIFr~LtV~dNi~~vlE~~~~d~~~~~~~~~l~~LL~ef~i~hlr~~~a~sLSGGERRR~EIARaLa~~ 157 (243)
T COG1137 78 RLGIGYLPQEASIFRKLTVEDNIMAVLEIREKDLKKAERKEELDALLEEFHITHLRDSKAYSLSGGERRRVEIARALAAN 157 (243)
T ss_pred hcCcccccccchHhhcCcHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHhchHHHhcCcccccccchHHHHHHHHHHhcC
Confidence 7889998998888776 566666665543 12344567799999999 67788899999999999998
Q ss_pred ---eeecCCCCCCCHHH---HHHHHHHhcccC-cEEEEccCCCH-HHHHHHHhccccccceEEEeecCCCCChhhHHHH
Q 018394 146 ---FNSTLPLTHVDEKL---CYQILHEYKIHN-AEVLFREDATV-DDLIDVIEGNRKYMKCVYVYNKIDVIGIDDVDKL 216 (356)
Q Consensus 146 ---l~~DEp~~~LD~~~---~~~il~~l~~~~-~~i~~thd~~~-~~~~~~i~~~~~~~p~i~v~NK~Dl~~~~~~~~l 216 (356)
+++||||+++||.. +++++..++..+ .++++.|++.. .+++ ...+++...-+......+++
T Consensus 158 P~fiLLDEPFAGVDPiaV~dIq~iI~~L~~rgiGvLITDHNVREtL~i~----------dRaYIi~~G~vla~G~p~ei 226 (243)
T COG1137 158 PKFILLDEPFAGVDPIAVIDIQRIIKHLKDRGIGVLITDHNVRETLDIC----------DRAYIISDGKVLAEGSPEEI 226 (243)
T ss_pred CCEEEecCCccCCCchhHHHHHHHHHHHHhCCceEEEccccHHHHHhhh----------heEEEEecCeEEecCCHHHH
Confidence 99999999999987 556677776544 78888898653 2333 44556665555443333333
No 44
>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.89 E-value=2.1e-22 Score=183.47 Aligned_cols=174 Identities=24% Similarity=0.222 Sum_probs=127.6
Q ss_pred CCCCeEEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCccccccccccccceEEEECCEeecc-cCccccccccccCccc
Q 018394 8 AGEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQL-LDLPGIIEGASEGKGR 86 (356)
Q Consensus 8 ~~~s~~v~~~~g~~v~LvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~-~D~pGl~~~~~~~~~~ 86 (356)
+++||.+.+ |+.++|+|+||||||||++.|+|...| ..|.+.++|.++.. .++..+ ...+|.
T Consensus 21 ~~v~~~i~~--Ge~~~i~G~nGsGKSTL~~~l~GLl~p-----------~~G~v~~~g~~~~~~~~~~~~----~~~vG~ 83 (235)
T COG1122 21 KDVSLEIEK--GERVLLIGPNGSGKSTLLKLLNGLLKP-----------TSGEVLVDGLDTSSEKSLLEL----RQKVGL 83 (235)
T ss_pred eeeEEEECC--CCEEEEECCCCCCHHHHHHHHcCcCcC-----------CCCEEEECCeeccchhhHHHh----hcceEE
Confidence 589999999 889999999999999999999999987 78999999988652 222221 223445
Q ss_pred ccccccc--c--cchhHHHHHHhcC--ChHHHHHHHHHHHHHccC--ccccccCcccccceecccee---------eeec
Q 018394 87 GRQVIAV--S--KSSDIVLMVLDAS--KSEGHRQILTKELEAVGL--RLNKRPPQIYFKKKKTGGIS---------FNST 149 (356)
Q Consensus 87 ~~~~~~~--~--~~~d~i~~v~d~~--~~~~~~~~i~~~L~~~~i--~l~~~~~~lS~g~~qr~~ia---------l~~D 149 (356)
++|.+.. + ...|-+.|..... ...+...++.+.|+.+++ ..++.+..||+||+||++|| +++|
T Consensus 84 VfQnpd~q~~~~tV~~evafg~~n~g~~~~e~~~rv~~~l~~vgl~~~~~r~p~~LSGGqkqRvaIA~vLa~~P~iliLD 163 (235)
T COG1122 84 VFQNPDDQLFGPTVEDEVAFGLENLGLPREEIEERVAEALELVGLEELLDRPPFNLSGGQKQRVAIAGVLAMGPEILLLD 163 (235)
T ss_pred EEECcccccccCcHHHHHhhchhhcCCCHHHHHHHHHHHHHHcCchhhccCCccccCCcceeeHHhhHHHHcCCCEEEEc
Confidence 5554421 1 1122233333222 233456778999999999 78999999999999999999 9999
Q ss_pred CCCCCCCHHHHHHHHHH---hccc--CcEEEEccCCCHHHHHHHHhccccccceEEEeecCCC
Q 018394 150 LPLTHVDEKLCYQILHE---YKIH--NAEVLFREDATVDDLIDVIEGNRKYMKCVYVYNKIDV 207 (356)
Q Consensus 150 Ep~~~LD~~~~~~il~~---l~~~--~~~i~~thd~~~~~~~~~i~~~~~~~p~i~v~NK~Dl 207 (356)
|||++||+....++++. +... .++|++|||++.... +...++++++.-+
T Consensus 164 EPta~LD~~~~~~l~~~l~~L~~~~~~tii~~tHd~~~~~~---------~ad~v~vl~~G~i 217 (235)
T COG1122 164 EPTAGLDPKGRRELLELLKKLKEEGGKTIIIVTHDLELVLE---------YADRVVVLDDGKI 217 (235)
T ss_pred CCCCCCCHHHHHHHHHHHHHHHhcCCCeEEEEeCcHHHHHh---------hCCEEEEEECCEE
Confidence 99999999986665554 4433 499999999764322 3578888887544
No 45
>TIGR02729 Obg_CgtA Obg family GTPase CgtA. This model describes a univeral, mostly one-gene-per-genome GTP-binding protein that associates with ribosomal subunits and appears to play a role in ribosomal RNA maturation. This GTPase, related to the nucleolar protein Obg, is designated CgtA in bacteria. Mutations in this gene are pleiotropic, but it appears that effects on cellular functions such as chromosome partition may be secondary to the effect on ribosome structure. Recent work done in Vibrio cholerae shows an essential role in the stringent response, in which RelA-dependent ability to synthesize the alarmone ppGpp is required for deletion of this GTPase to be lethal.
Probab=99.89 E-value=3.3e-23 Score=198.49 Aligned_cols=160 Identities=31% Similarity=0.487 Sum_probs=122.6
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHcCCCCccccccccccccceEEEECC-EeecccCccccccccccCccccccccccccch
Q 018394 19 HGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYND-TKIQLLDLPGIIEGASEGKGRGRQVIAVSKSS 97 (356)
Q Consensus 19 g~~v~LvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g-~~i~~~D~pGl~~~~~~~~~~~~~~~~~~~~~ 97 (356)
-+.|+|||.||||||||||+|++..+.|++|||||++|+.|.+.+++ ..+.++|+||+++.++.+.++..+++..++.+
T Consensus 157 ~adV~lvG~pnaGKSTLl~~lt~~~~~va~y~fTT~~p~ig~v~~~~~~~~~i~D~PGli~~a~~~~gLg~~flrhiera 236 (329)
T TIGR02729 157 LADVGLVGLPNAGKSTLISAVSAAKPKIADYPFTTLVPNLGVVRVDDGRSFVIADIPGLIEGASEGAGLGHRFLKHIERT 236 (329)
T ss_pred cccEEEEcCCCCCHHHHHHHHhcCCccccCCCCCccCCEEEEEEeCCceEEEEEeCCCcccCCcccccHHHHHHHHHHhh
Confidence 56899999999999999999999988899999999999999999987 89999999999887777767777887777889
Q ss_pred hHHHHHHhcCCh-----HHHHHHHHHHHHHccCccccccCcccccceeccceeeeecCCCCCCCHHHHHHHHHHhcccCc
Q 018394 98 DIVLMVLDASKS-----EGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNA 172 (356)
Q Consensus 98 d~i~~v~d~~~~-----~~~~~~i~~~L~~~~i~l~~~~~~lS~g~~qr~~ial~~DEp~~~LD~~~~~~il~~l~~~~~ 172 (356)
+++++|+|.+.. .++...+.++|.. +
T Consensus 237 d~ll~VvD~s~~~~~~~~e~l~~l~~EL~~--------------------------------------------~----- 267 (329)
T TIGR02729 237 RVLLHLIDISPLDGRDPIEDYEIIRNELKK--------------------------------------------Y----- 267 (329)
T ss_pred CEEEEEEcCccccccCHHHHHHHHHHHHHH--------------------------------------------h-----
Confidence 999999987643 1111111111111 0
Q ss_pred EEEEccCCCHHHHHHHHhccccccceEEEeecCCCCChhhHHH----Hhc--CCCEEEeccccccchHHHHHHHHHHh
Q 018394 173 EVLFREDATVDDLIDVIEGNRKYMKCVYVYNKIDVIGIDDVDK----LAR--QPNSVVISCNLKLNLDRLLARMWEEM 244 (356)
Q Consensus 173 ~i~~thd~~~~~~~~~i~~~~~~~p~i~v~NK~Dl~~~~~~~~----l~~--~~~~i~iSa~~~~~l~~L~~~i~~~l 244 (356)
......+|+++|+||+|+...+..+. +.+ ...++++||+++.|+++|.+.|.+.|
T Consensus 268 -----------------~~~l~~kp~IIV~NK~DL~~~~~~~~~~~~l~~~~~~~vi~iSAktg~GI~eL~~~I~~~l 328 (329)
T TIGR02729 268 -----------------SPELAEKPRIVVLNKIDLLDEEELAELLKELKKALGKPVFPISALTGEGLDELLYALAELL 328 (329)
T ss_pred -----------------hhhhccCCEEEEEeCccCCChHHHHHHHHHHHHHcCCcEEEEEccCCcCHHHHHHHHHHHh
Confidence 00012369999999999976543322 221 13589999999999999999998765
No 46
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=99.89 E-value=6.2e-23 Score=185.77 Aligned_cols=164 Identities=23% Similarity=0.275 Sum_probs=115.8
Q ss_pred CCCCeEEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCccccccccccccceEEEECCEeecccCccccccccccCcccc
Q 018394 8 AGEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRG 87 (356)
Q Consensus 8 ~~~s~~v~~~~g~~v~LvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~~D~pGl~~~~~~~~~~~ 87 (356)
.++||++.+ |++++|+|+||||||||+++|+|...+ ..|.+.++|.++...+...........+++.
T Consensus 21 ~~~s~~i~~--G~~~~l~G~nGsGKSTLl~~i~Gl~~~-----------~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~ 87 (218)
T cd03255 21 KGVSLSIEK--GEFVAIVGPSGSGKSTLLNILGGLDRP-----------TSGEVRVDGTDISKLSEKELAAFRRRHIGFV 87 (218)
T ss_pred eeeEEEEcC--CCEEEEEcCCCCCHHHHHHHHhCCcCC-----------CceeEEECCEehhhcchhHHHHHHhhcEEEE
Confidence 588999999 889999999999999999999999876 7899999998775433111100011223343
Q ss_pred cccccccc---chhHHHHHHhcC--ChHHHHHHHHHHHHHccC--ccccccCcccccceecccee---------eeecCC
Q 018394 88 RQVIAVSK---SSDIVLMVLDAS--KSEGHRQILTKELEAVGL--RLNKRPPQIYFKKKKTGGIS---------FNSTLP 151 (356)
Q Consensus 88 ~~~~~~~~---~~d~i~~v~d~~--~~~~~~~~i~~~L~~~~i--~l~~~~~~lS~g~~qr~~ia---------l~~DEp 151 (356)
.|....+. ..+.+.+..... ......+.+.+.++.+++ .+++.+.+||+||+||++++ +++|||
T Consensus 88 ~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~lllLDEP 167 (218)
T cd03255 88 FQSFNLLPDLTALENVELPLLLAGVPKKERRERAEELLERVGLGDRLNHYPSELSGGQQQRVAIARALANDPKIILADEP 167 (218)
T ss_pred eeccccCCCCcHHHHHHHHHhhcCCCHHHHHHHHHHHHHHcCCchhhhcChhhcCHHHHHHHHHHHHHccCCCEEEEcCC
Confidence 44333222 244444432211 112234567888999999 57888999999999999988 999999
Q ss_pred CCCCCHHHHHH---HHHHhcc--cCcEEEEccCCCHHH
Q 018394 152 LTHVDEKLCYQ---ILHEYKI--HNAEVLFREDATVDD 184 (356)
Q Consensus 152 ~~~LD~~~~~~---il~~l~~--~~~~i~~thd~~~~~ 184 (356)
|++||+..... ++.++.. +.+++++||+.+..+
T Consensus 168 ~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~ 205 (218)
T cd03255 168 TGNLDSETGKEVMELLRELNKEAGTTIVVVTHDPELAE 205 (218)
T ss_pred cccCCHHHHHHHHHHHHHHHHhcCCeEEEEECCHHHHh
Confidence 99999987544 4555543 458999999976543
No 47
>PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional
Probab=99.89 E-value=1.6e-22 Score=195.94 Aligned_cols=172 Identities=19% Similarity=0.198 Sum_probs=129.1
Q ss_pred CCCCeEEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCccccccccccccceEEEECCEeecccCccccccccccCcccc
Q 018394 8 AGEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRG 87 (356)
Q Consensus 8 ~~~s~~v~~~~g~~v~LvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~~D~pGl~~~~~~~~~~~ 87 (356)
.+++|++.+ |++++|+|||||||||||++|+|...+ ..|.|.++|.++.-. + .....+++.
T Consensus 21 ~~vsl~i~~--Ge~~~llG~sGsGKSTLLr~iaGl~~p-----------~~G~I~~~g~~i~~~--~----~~~r~ig~v 81 (356)
T PRK11650 21 KGIDLDVAD--GEFIVLVGPSGCGKSTLLRMVAGLERI-----------TSGEIWIGGRVVNEL--E----PADRDIAMV 81 (356)
T ss_pred eeeeEEEcC--CCEEEEECCCCCcHHHHHHHHHCCCCC-----------CceEEEECCEECCCC--C----HHHCCEEEE
Confidence 579999999 889999999999999999999999876 899999999987532 2 112456677
Q ss_pred ccccccccc---hhHHHHHHhcC--ChHHHHHHHHHHHHHccC--ccccccCcccccceecccee---------eeecCC
Q 018394 88 RQVIAVSKS---SDIVLMVLDAS--KSEGHRQILTKELEAVGL--RLNKRPPQIYFKKKKTGGIS---------FNSTLP 151 (356)
Q Consensus 88 ~~~~~~~~~---~d~i~~v~d~~--~~~~~~~~i~~~L~~~~i--~l~~~~~~lS~g~~qr~~ia---------l~~DEp 151 (356)
+|....+.. .+++.+.+... ......+.+.+.|+.++| .+++++.+||+||+||++|| +++|||
T Consensus 82 ~Q~~~lfp~~tv~eNi~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~QRvalARAL~~~P~llLLDEP 161 (356)
T PRK11650 82 FQNYALYPHMSVRENMAYGLKIRGMPKAEIEERVAEAARILELEPLLDRKPRELSGGQRQRVAMGRAIVREPAVFLFDEP 161 (356)
T ss_pred eCCccccCCCCHHHHHHhHHhhcCCCHHHHHHHHHHHHHHcCChhHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCC
Confidence 776655544 45555544322 222334568889999999 78999999999999999998 999999
Q ss_pred CCCCCHHHHHHHHHHh---cc--cCcEEEEccCCCHHHHHHHHhccccccceEEEeecCCC
Q 018394 152 LTHVDEKLCYQILHEY---KI--HNAEVLFREDATVDDLIDVIEGNRKYMKCVYVYNKIDV 207 (356)
Q Consensus 152 ~~~LD~~~~~~il~~l---~~--~~~~i~~thd~~~~~~~~~i~~~~~~~p~i~v~NK~Dl 207 (356)
|++||......+.+.+ .. +.++|++|||...... ....++++++.-+
T Consensus 162 ~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~ea~~---------l~D~i~vl~~G~i 213 (356)
T PRK11650 162 LSNLDAKLRVQMRLEIQRLHRRLKTTSLYVTHDQVEAMT---------LADRVVVMNGGVA 213 (356)
T ss_pred cccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHH---------hCCEEEEEeCCEE
Confidence 9999998755544443 32 4589999999754321 2366777776654
No 48
>PRK12297 obgE GTPase CgtA; Reviewed
Probab=99.88 E-value=3.4e-23 Score=203.49 Aligned_cols=163 Identities=31% Similarity=0.470 Sum_probs=125.7
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHcCCCCccccccccccccceEEEEC-CEeecccCccccccccccCccccccccccccch
Q 018394 19 HGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYN-DTKIQLLDLPGIIEGASEGKGRGRQVIAVSKSS 97 (356)
Q Consensus 19 g~~v~LvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~-g~~i~~~D~pGl~~~~~~~~~~~~~~~~~~~~~ 97 (356)
-+.|+|||.||||||||||+|++..+.|++|||||++|+.|.+.++ +..+.++|+||++..++.+.+++.+++..++.+
T Consensus 158 ~adVglVG~pNaGKSTLLn~Lt~ak~kIa~ypfTTl~PnlG~v~~~~~~~~~laD~PGliega~~~~gLg~~fLrhier~ 237 (424)
T PRK12297 158 LADVGLVGFPNVGKSTLLSVVSNAKPKIANYHFTTLVPNLGVVETDDGRSFVMADIPGLIEGASEGVGLGHQFLRHIERT 237 (424)
T ss_pred cCcEEEEcCCCCCHHHHHHHHHcCCCccccCCcceeceEEEEEEEeCCceEEEEECCCCcccccccchHHHHHHHHHhhC
Confidence 3489999999999999999999998889999999999999999998 788999999999988877778888888888889
Q ss_pred hHHHHHHhcCCh-----HHHHHHHHHHHHHccCccccccCcccccceeccceeeeecCCCCCCCHHHHHHHHHHhcccCc
Q 018394 98 DIVLMVLDASKS-----EGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNA 172 (356)
Q Consensus 98 d~i~~v~d~~~~-----~~~~~~i~~~L~~~~i~l~~~~~~lS~g~~qr~~ial~~DEp~~~LD~~~~~~il~~l~~~~~ 172 (356)
+++++|+|.+.. ..+.+.+.++|+.+.
T Consensus 238 ~llI~VID~s~~~~~dp~e~~~~i~~EL~~y~------------------------------------------------ 269 (424)
T PRK12297 238 RVIVHVIDMSGSEGRDPIEDYEKINKELKLYN------------------------------------------------ 269 (424)
T ss_pred CEEEEEEeCCccccCChHHHHHHHHHHHhhhc------------------------------------------------
Confidence 999999998642 112222222221110
Q ss_pred EEEEccCCCHHHHHHHHhccccccceEEEeecCCCCCh-hhHHHHhcC--CCEEEeccccccchHHHHHHHHHHhCce
Q 018394 173 EVLFREDATVDDLIDVIEGNRKYMKCVYVYNKIDVIGI-DDVDKLARQ--PNSVVISCNLKLNLDRLLARMWEEMGLV 247 (356)
Q Consensus 173 ~i~~thd~~~~~~~~~i~~~~~~~p~i~v~NK~Dl~~~-~~~~~l~~~--~~~i~iSa~~~~~l~~L~~~i~~~l~~i 247 (356)
.....+|.++|+||+|+... +.++.+.+. ..++++||+++.|+++|.+.+.+.+...
T Consensus 270 ------------------~~L~~kP~IVV~NK~DL~~~~e~l~~l~~~l~~~i~~iSA~tgeGI~eL~~~L~~~l~~~ 329 (424)
T PRK12297 270 ------------------PRLLERPQIVVANKMDLPEAEENLEEFKEKLGPKVFPISALTGQGLDELLYAVAELLEET 329 (424)
T ss_pred ------------------hhccCCcEEEEEeCCCCcCCHHHHHHHHHHhCCcEEEEeCCCCCCHHHHHHHHHHHHHhC
Confidence 00124699999999998533 233344321 3589999999999999999998877644
No 49
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=99.88 E-value=2.2e-22 Score=182.01 Aligned_cols=162 Identities=23% Similarity=0.262 Sum_probs=116.0
Q ss_pred CCCCeEEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCccccccccccccceEEEECCEeecccCccccccccccCcccc
Q 018394 8 AGEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRG 87 (356)
Q Consensus 8 ~~~s~~v~~~~g~~v~LvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~~D~pGl~~~~~~~~~~~ 87 (356)
.++||++.+ |++++|+|+||||||||+++|+|...+ ..|.+.++|.++...+...+ ......+++.
T Consensus 20 ~~isl~i~~--Ge~~~i~G~nGsGKSTLl~~l~Gl~~~-----------~~G~i~~~g~~~~~~~~~~~-~~~~~~i~~~ 85 (216)
T TIGR00960 20 DNLNFHITK--GEMVFLVGHSGAGKSTFLKLILGIEKP-----------TRGKIRFNGQDLTRLRGREI-PFLRRHIGMV 85 (216)
T ss_pred EeeEEEEcC--CCEEEEECCCCCCHHHHHHHHhCCCCC-----------CceEEEECCEehhhcChhHH-HHHHHhceEE
Confidence 588999999 889999999999999999999999866 78999999987753321110 0011234444
Q ss_pred cccccccc---chhHHHHHHhcC--ChHHHHHHHHHHHHHccC--ccccccCcccccceecccee---------eeecCC
Q 018394 88 RQVIAVSK---SSDIVLMVLDAS--KSEGHRQILTKELEAVGL--RLNKRPPQIYFKKKKTGGIS---------FNSTLP 151 (356)
Q Consensus 88 ~~~~~~~~---~~d~i~~v~d~~--~~~~~~~~i~~~L~~~~i--~l~~~~~~lS~g~~qr~~ia---------l~~DEp 151 (356)
.|....+. ..+.+.+..... ......+.+.+.++.+++ .+++.+..||+||+||+.+| +++|||
T Consensus 86 ~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~~p~llllDEP 165 (216)
T TIGR00960 86 FQDHRLLSDRTVYDNVAFPLRIIGVPPRDANERVSAALEKVGLEGKAHALPMQLSGGEQQRVAIARAIVHKPPLLLADEP 165 (216)
T ss_pred ecCccccccccHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCC
Confidence 44433332 244444432221 222334567888999999 67889999999999999988 999999
Q ss_pred CCCCCHHHHHHH---HHHhcc-cCcEEEEccCCCHH
Q 018394 152 LTHVDEKLCYQI---LHEYKI-HNAEVLFREDATVD 183 (356)
Q Consensus 152 ~~~LD~~~~~~i---l~~l~~-~~~~i~~thd~~~~ 183 (356)
|++||+.....+ +.++.. +.+++++|||.+..
T Consensus 166 t~~LD~~~~~~l~~~l~~~~~~~~tii~vsH~~~~~ 201 (216)
T TIGR00960 166 TGNLDPELSRDIMRLFEEFNRRGTTVLVATHDINLV 201 (216)
T ss_pred CCcCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHH
Confidence 999999885554 444432 45899999997643
No 50
>PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional
Probab=99.88 E-value=2.8e-22 Score=193.72 Aligned_cols=173 Identities=18% Similarity=0.170 Sum_probs=130.8
Q ss_pred CCCCeEEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCccccccccccccceEEEECCEeecccCccccccccccCcccc
Q 018394 8 AGEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRG 87 (356)
Q Consensus 8 ~~~s~~v~~~~g~~v~LvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~~D~pGl~~~~~~~~~~~ 87 (356)
.+++|++.+ |++++|+|||||||||||++|+|...+ ..|.|.++|.++.- .+ .....+++.
T Consensus 23 ~~isl~i~~--Ge~~~llGpsGsGKSTLLr~IaGl~~p-----------~~G~I~~~g~~i~~--~~----~~~r~ig~v 83 (351)
T PRK11432 23 DNLNLTIKQ--GTMVTLLGPSGCGKTTVLRLVAGLEKP-----------TEGQIFIDGEDVTH--RS----IQQRDICMV 83 (351)
T ss_pred eeeEEEEcC--CCEEEEECCCCCcHHHHHHHHHCCCCC-----------CceEEEECCEECCC--CC----HHHCCEEEE
Confidence 578999999 889999999999999999999999877 89999999998753 22 122456677
Q ss_pred ccccccccc---hhHHHHHHhcC--ChHHHHHHHHHHHHHccC--ccccccCcccccceecccee---------eeecCC
Q 018394 88 RQVIAVSKS---SDIVLMVLDAS--KSEGHRQILTKELEAVGL--RLNKRPPQIYFKKKKTGGIS---------FNSTLP 151 (356)
Q Consensus 88 ~~~~~~~~~---~d~i~~v~d~~--~~~~~~~~i~~~L~~~~i--~l~~~~~~lS~g~~qr~~ia---------l~~DEp 151 (356)
+|....+.. .+++.+.+... ...+..+.+.+.++.+++ .+++++..||+||+||+++| +++|||
T Consensus 84 fQ~~~lfp~~tv~eNi~~~l~~~~~~~~~~~~~v~~~l~~~gl~~~~~r~~~~LSgGq~QRVaLARaL~~~P~lLLLDEP 163 (351)
T PRK11432 84 FQSYALFPHMSLGENVGYGLKMLGVPKEERKQRVKEALELVDLAGFEDRYVDQISGGQQQRVALARALILKPKVLLFDEP 163 (351)
T ss_pred eCCcccCCCCCHHHHHHHHHhHcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEcCC
Confidence 776666654 55565554422 223345678899999999 68899999999999999998 999999
Q ss_pred CCCCCHHHHHHHHHHhc---c--cCcEEEEccCCCHHHHHHHHhccccccceEEEeecCCCC
Q 018394 152 LTHVDEKLCYQILHEYK---I--HNAEVLFREDATVDDLIDVIEGNRKYMKCVYVYNKIDVI 208 (356)
Q Consensus 152 ~~~LD~~~~~~il~~l~---~--~~~~i~~thd~~~~~~~~~i~~~~~~~p~i~v~NK~Dl~ 208 (356)
|++||.....++...+. . +.+++++|||.+.... ....+++++..-+.
T Consensus 164 ~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~e~~~---------laD~i~vm~~G~i~ 216 (351)
T PRK11432 164 LSNLDANLRRSMREKIRELQQQFNITSLYVTHDQSEAFA---------VSDTVIVMNKGKIM 216 (351)
T ss_pred cccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHH---------hCCEEEEEECCEEE
Confidence 99999988655544443 2 4599999999765421 13667777765443
No 51
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.88 E-value=3.1e-22 Score=183.35 Aligned_cols=175 Identities=23% Similarity=0.193 Sum_probs=121.9
Q ss_pred CCCCeEEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCccccccccccccceEEEECCEeecccCccccccccccCcccc
Q 018394 8 AGEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRG 87 (356)
Q Consensus 8 ~~~s~~v~~~~g~~v~LvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~~D~pGl~~~~~~~~~~~ 87 (356)
.++||++.+ |++++|+|+||||||||+++|+|...| ..|.|.++|.++...+.... ......+++.
T Consensus 17 ~~vs~~i~~--Ge~~~l~G~nGsGKSTLl~~l~G~~~p-----------~~G~i~~~g~~~~~~~~~~~-~~~~~~i~~v 82 (235)
T cd03261 17 KGVDLDVRR--GEILAIIGPSGSGKSTLLRLIVGLLRP-----------DSGEVLIDGEDISGLSEAEL-YRLRRRMGML 82 (235)
T ss_pred eeeEEEEcC--CCEEEEECCCCCCHHHHHHHHhCCCCC-----------CceEEEECCEEccccChhhH-HHHhcceEEE
Confidence 588999999 889999999999999999999999876 78999999987653321000 0111234444
Q ss_pred ccccccccc---hhHHHHHHhc---CChHHHHHHHHHHHHHccC--ccccccCcccccceecccee---------eeecC
Q 018394 88 RQVIAVSKS---SDIVLMVLDA---SKSEGHRQILTKELEAVGL--RLNKRPPQIYFKKKKTGGIS---------FNSTL 150 (356)
Q Consensus 88 ~~~~~~~~~---~d~i~~v~d~---~~~~~~~~~i~~~L~~~~i--~l~~~~~~lS~g~~qr~~ia---------l~~DE 150 (356)
.|....+.. .+.+.+.... .......+.+.+.|+.+++ ..++++..||+||+||+.|| +++||
T Consensus 83 ~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDE 162 (235)
T cd03261 83 FQSGALFDSLTVFENVAFPLREHTRLSEEEIREIVLEKLEAVGLRGAEDLYPAELSGGMKKRVALARALALDPELLLYDE 162 (235)
T ss_pred ccCcccCCCCcHHHHHHHHHhhccCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEecC
Confidence 444333332 4444433221 1222234567788999998 67888999999999999998 99999
Q ss_pred CCCCCCHHHHHHH---HHHhcc--cCcEEEEccCCCHHHHHHHHhccccccceEEEeecC
Q 018394 151 PLTHVDEKLCYQI---LHEYKI--HNAEVLFREDATVDDLIDVIEGNRKYMKCVYVYNKI 205 (356)
Q Consensus 151 p~~~LD~~~~~~i---l~~l~~--~~~~i~~thd~~~~~~~~~i~~~~~~~p~i~v~NK~ 205 (356)
||++||+.....+ ++++.. +.+++++||+.+.... .+..+++++..
T Consensus 163 Pt~~LD~~~~~~l~~~l~~~~~~~~~tvi~vsH~~~~~~~---------~~d~v~~l~~G 213 (235)
T cd03261 163 PTAGLDPIASGVIDDLIRSLKKELGLTSIMVTHDLDTAFA---------IADRIAVLYDG 213 (235)
T ss_pred CcccCCHHHHHHHHHHHHHHHHhcCcEEEEEecCHHHHHH---------hcCEEEEEECC
Confidence 9999999885554 444433 4599999999764321 23556666543
No 52
>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit. This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.
Probab=99.88 E-value=3.1e-22 Score=190.18 Aligned_cols=174 Identities=14% Similarity=0.106 Sum_probs=124.9
Q ss_pred CCCCeEEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCccccccccccccceEEEECCEeecccCccccccccccCcccc
Q 018394 8 AGEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRG 87 (356)
Q Consensus 8 ~~~s~~v~~~~g~~v~LvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~~D~pGl~~~~~~~~~~~ 87 (356)
.++||++.+ |+++||+||||||||||+++|+|...| ..|.+.++|.++.. +... ....+++.
T Consensus 10 ~~vs~~i~~--Ge~~~l~G~NGaGKSTLl~~l~Gl~~p-----------~~G~i~~~g~~~~~-~~~~----~~~~i~~~ 71 (302)
T TIGR01188 10 DGVNFKVRE--GEVFGFLGPNGAGKTTTIRMLTTLLRP-----------TSGTARVAGYDVVR-EPRK----VRRSIGIV 71 (302)
T ss_pred eeeeEEEcC--CcEEEEECCCCCCHHHHHHHHhCCCCC-----------CceEEEECCEEccc-CHHH----HHhhcEEe
Confidence 689999999 889999999999999999999999876 79999999987642 1111 12234444
Q ss_pred ccccccccc---hhHHHHHHhcC--ChHHHHHHHHHHHHHccC--ccccccCcccccceecccee---------eeecCC
Q 018394 88 RQVIAVSKS---SDIVLMVLDAS--KSEGHRQILTKELEAVGL--RLNKRPPQIYFKKKKTGGIS---------FNSTLP 151 (356)
Q Consensus 88 ~~~~~~~~~---~d~i~~v~d~~--~~~~~~~~i~~~L~~~~i--~l~~~~~~lS~g~~qr~~ia---------l~~DEp 151 (356)
.|....+.. .+.+.+..... ......+.+.+.|+.+++ ..++++..||+||+||+++| +++|||
T Consensus 72 ~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEP 151 (302)
T TIGR01188 72 PQYASVDEDLTGRENLEMMGRLYGLPKDEAEERAEELLELFELGEAADRPVGTYSGGMRRRLDIAASLIHQPDVLFLDEP 151 (302)
T ss_pred cCCCCCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHhCCchhhCCHHHHHHHHHHHHHhcCCCEEEEeCC
Confidence 444333332 44444433222 122234567889999999 67889999999999999998 999999
Q ss_pred CCCCCHHHHHH---HHHHhcc-cCcEEEEccCCCHHHHHHHHhccccccceEEEeecCCCC
Q 018394 152 LTHVDEKLCYQ---ILHEYKI-HNAEVLFREDATVDDLIDVIEGNRKYMKCVYVYNKIDVI 208 (356)
Q Consensus 152 ~~~LD~~~~~~---il~~l~~-~~~~i~~thd~~~~~~~~~i~~~~~~~p~i~v~NK~Dl~ 208 (356)
|++||+..... +++.+.. +.+++++||+....+. .+..++++++.-+.
T Consensus 152 t~gLD~~~~~~l~~~l~~~~~~g~tvi~~sH~~~~~~~---------~~d~v~~l~~G~i~ 203 (302)
T TIGR01188 152 TTGLDPRTRRAIWDYIRALKEEGVTILLTTHYMEEADK---------LCDRIAIIDHGRII 203 (302)
T ss_pred CcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHH---------hCCEEEEEECCEEE
Confidence 99999987554 4555543 4599999999764332 23667777765543
No 53
>COG1160 Predicted GTPases [General function prediction only]
Probab=99.88 E-value=1.8e-23 Score=201.81 Aligned_cols=155 Identities=25% Similarity=0.303 Sum_probs=119.3
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcCC-CCccccccccccccceEEEECCEeecccCcccccccccc--Cccccccccccccc
Q 018394 20 GRVALIGFPSVGKSTLLTLLTGTH-SEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASE--GKGRGRQVIAVSKS 96 (356)
Q Consensus 20 ~~v~LvG~~gaGKSTLln~L~g~~-~~vs~~p~TT~~~~~G~i~~~g~~i~~~D~pGl~~~~~~--~~~~~~~~~~~~~~ 96 (356)
..|||||+||+|||||||.|+|.. +.|+++||||||+..|.+.+.|.++.++||+|+...... ...+..|....+..
T Consensus 4 ~~VAIVGRPNVGKSTLFNRL~g~r~AIV~D~pGvTRDr~y~~~~~~~~~f~lIDTgGl~~~~~~~l~~~i~~Qa~~Ai~e 83 (444)
T COG1160 4 PVVAIVGRPNVGKSTLFNRLTGRRIAIVSDTPGVTRDRIYGDAEWLGREFILIDTGGLDDGDEDELQELIREQALIAIEE 83 (444)
T ss_pred CEEEEECCCCCcHHHHHHHHhCCeeeEeecCCCCccCCccceeEEcCceEEEEECCCCCcCCchHHHHHHHHHHHHHHHh
Confidence 479999999999999999999987 679999999999999999999999999999999754322 22234566677788
Q ss_pred hhHHHHHHhcCChHHHHHHHHHHHHHccCccccccCcccccceeccceeeeecCCCCCCCHHHHHHHHHHhcccCcEEEE
Q 018394 97 SDIVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNAEVLF 176 (356)
Q Consensus 97 ~d~i~~v~d~~~~~~~~~~i~~~L~~~~i~l~~~~~~lS~g~~qr~~ial~~DEp~~~LD~~~~~~il~~l~~~~~~i~~ 176 (356)
||+++||+|+.......+. .+.++|+
T Consensus 84 ADvilfvVD~~~Git~~D~-------------------------------------------~ia~~Lr----------- 109 (444)
T COG1160 84 ADVILFVVDGREGITPADE-------------------------------------------EIAKILR----------- 109 (444)
T ss_pred CCEEEEEEeCCCCCCHHHH-------------------------------------------HHHHHHH-----------
Confidence 9999999988653221110 1112221
Q ss_pred ccCCCHHHHHHHHhccccccceEEEeecCCCCChhh-HHHHhc--CCCEEEeccccccchHHHHHHHHHHh
Q 018394 177 REDATVDDLIDVIEGNRKYMKCVYVYNKIDVIGIDD-VDKLAR--QPNSVVISCNLKLNLDRLLARMWEEM 244 (356)
Q Consensus 177 thd~~~~~~~~~i~~~~~~~p~i~v~NK~Dl~~~~~-~~~l~~--~~~~i~iSa~~~~~l~~L~~~i~~~l 244 (356)
+..+|+++|+||+|-...++ ..+++. +..+++|||..|.|+++|++++.+.+
T Consensus 110 ----------------~~~kpviLvvNK~D~~~~e~~~~efyslG~g~~~~ISA~Hg~Gi~dLld~v~~~l 164 (444)
T COG1160 110 ----------------RSKKPVILVVNKIDNLKAEELAYEFYSLGFGEPVPISAEHGRGIGDLLDAVLELL 164 (444)
T ss_pred ----------------hcCCCEEEEEEcccCchhhhhHHHHHhcCCCCceEeehhhccCHHHHHHHHHhhc
Confidence 12379999999999874433 334443 45689999999999999999999987
No 54
>TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein. This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely.
Probab=99.88 E-value=3.4e-22 Score=193.40 Aligned_cols=173 Identities=20% Similarity=0.216 Sum_probs=130.4
Q ss_pred CCCCeEEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCccccccccccccceEEEECCEeecccCccccccccccCcccc
Q 018394 8 AGEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRG 87 (356)
Q Consensus 8 ~~~s~~v~~~~g~~v~LvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~~D~pGl~~~~~~~~~~~ 87 (356)
++++|++.+ |++++|+|||||||||||++|+|...| ..|.|.++|.++.-. +. ....+++.
T Consensus 21 ~~vs~~i~~--Ge~~~l~GpsGsGKSTLLr~iaGl~~p-----------~~G~I~i~g~~~~~~--~~----~~r~ig~v 81 (353)
T TIGR03265 21 KDISLSVKK--GEFVCLLGPSGCGKTTLLRIIAGLERQ-----------TAGTIYQGGRDITRL--PP----QKRDYGIV 81 (353)
T ss_pred EeeEEEEcC--CCEEEEECCCCCCHHHHHHHHHCCCCC-----------CceEEEECCEECCCC--CH----HHCCEEEE
Confidence 478999998 789999999999999999999999877 899999999987532 21 22456677
Q ss_pred ccccccccc---hhHHHHHHhcC--ChHHHHHHHHHHHHHccC--ccccccCcccccceecccee---------eeecCC
Q 018394 88 RQVIAVSKS---SDIVLMVLDAS--KSEGHRQILTKELEAVGL--RLNKRPPQIYFKKKKTGGIS---------FNSTLP 151 (356)
Q Consensus 88 ~~~~~~~~~---~d~i~~v~d~~--~~~~~~~~i~~~L~~~~i--~l~~~~~~lS~g~~qr~~ia---------l~~DEp 151 (356)
+|....+.. .+++.+.+... ........+.++++.++| .+++++.+||+||+||+++| +++|||
T Consensus 82 ~Q~~~lfp~~tv~eNi~~~~~~~~~~~~~~~~~~~~~l~~l~L~~~~~~~~~~LSgGq~QRvaLARaL~~~P~llLLDEP 161 (353)
T TIGR03265 82 FQSYALFPNLTVADNIAYGLKNRGMGRAEVAERVAELLDLVGLPGSERKYPGQLSGGQQQRVALARALATSPGLLLLDEP 161 (353)
T ss_pred eCCcccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCchhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCC
Confidence 777666654 45555444322 223345678899999999 78999999999999999998 999999
Q ss_pred CCCCCHHHHHHHHHHhc---c--cCcEEEEccCCCHHHHHHHHhccccccceEEEeecCCCC
Q 018394 152 LTHVDEKLCYQILHEYK---I--HNAEVLFREDATVDDLIDVIEGNRKYMKCVYVYNKIDVI 208 (356)
Q Consensus 152 ~~~LD~~~~~~il~~l~---~--~~~~i~~thd~~~~~~~~~i~~~~~~~p~i~v~NK~Dl~ 208 (356)
+++||.....++...+. . +.++|++|||...... ....++++++.-+.
T Consensus 162 ~s~LD~~~r~~l~~~L~~l~~~~~~tvi~vTHd~~ea~~---------l~d~i~vl~~G~i~ 214 (353)
T TIGR03265 162 LSALDARVREHLRTEIRQLQRRLGVTTIMVTHDQEEALS---------MADRIVVMNHGVIE 214 (353)
T ss_pred cccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHH---------hCCEEEEEECCEEE
Confidence 99999987555544443 2 4589999999764321 13667788776554
No 55
>PRK13537 nodulation ABC transporter NodI; Provisional
Probab=99.88 E-value=3.5e-22 Score=190.09 Aligned_cols=182 Identities=16% Similarity=0.118 Sum_probs=129.8
Q ss_pred CCCCeEEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCccccccccccccceEEEECCEeecccCccccccccccCcccc
Q 018394 8 AGEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRG 87 (356)
Q Consensus 8 ~~~s~~v~~~~g~~v~LvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~~D~pGl~~~~~~~~~~~ 87 (356)
+++||++.+ |+++||+||||||||||+++|+|...| ..|.+.++|.++.-.. + .....+++.
T Consensus 24 ~~vsl~i~~--Gei~gllGpNGaGKSTLl~~l~Gl~~p-----------~~G~v~i~G~~~~~~~-~----~~~~~ig~v 85 (306)
T PRK13537 24 DGLSFHVQR--GECFGLLGPNGAGKTTTLRMLLGLTHP-----------DAGSISLCGEPVPSRA-R----HARQRVGVV 85 (306)
T ss_pred ecceEEEeC--CcEEEEECCCCCCHHHHHHHHhcCCCC-----------CceEEEECCEecccch-H----HHHhcEEEE
Confidence 689999999 889999999999999999999999876 8999999998864321 1 112234555
Q ss_pred cccccccc---chhHHHHHHhcC--ChHHHHHHHHHHHHHccC--ccccccCcccccceecccee---------eeecCC
Q 018394 88 RQVIAVSK---SSDIVLMVLDAS--KSEGHRQILTKELEAVGL--RLNKRPPQIYFKKKKTGGIS---------FNSTLP 151 (356)
Q Consensus 88 ~~~~~~~~---~~d~i~~v~d~~--~~~~~~~~i~~~L~~~~i--~l~~~~~~lS~g~~qr~~ia---------l~~DEp 151 (356)
.|....+. ..+++.+..... ...+....+.++++.+++ ..++++..||+||+||++|| +++|||
T Consensus 86 ~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~aL~~~P~lllLDEP 165 (306)
T PRK13537 86 PQFDNLDPDFTVRENLLVFGRYFGLSAAAARALVPPLLEFAKLENKADAKVGELSGGMKRRLTLARALVNDPDVLVLDEP 165 (306)
T ss_pred eccCcCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchHhcCchhhCCHHHHHHHHHHHHHhCCCCEEEEeCC
Confidence 55443333 345554433222 222234567788999998 67888999999999999998 999999
Q ss_pred CCCCCHHHHH---HHHHHhcc-cCcEEEEccCCCHHHHHHHHhccccccceEEEeecCCCCChhhHHHH
Q 018394 152 LTHVDEKLCY---QILHEYKI-HNAEVLFREDATVDDLIDVIEGNRKYMKCVYVYNKIDVIGIDDVDKL 216 (356)
Q Consensus 152 ~~~LD~~~~~---~il~~l~~-~~~~i~~thd~~~~~~~~~i~~~~~~~p~i~v~NK~Dl~~~~~~~~l 216 (356)
|++||+.... ++++++.. +.+++++||+.+..+. .+..++++++.-+......+.+
T Consensus 166 t~gLD~~~~~~l~~~l~~l~~~g~till~sH~l~e~~~---------~~d~i~il~~G~i~~~g~~~~l 225 (306)
T PRK13537 166 TTGLDPQARHLMWERLRSLLARGKTILLTTHFMEEAER---------LCDRLCVIEEGRKIAEGAPHAL 225 (306)
T ss_pred CcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHH---------hCCEEEEEECCEEEEECCHHHH
Confidence 9999998854 45555543 4599999999875432 2467788887654433333343
No 56
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=99.88 E-value=2.3e-22 Score=184.04 Aligned_cols=163 Identities=24% Similarity=0.258 Sum_probs=116.1
Q ss_pred CCCCeEEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCccccccccccccceEEEECCEeecccCccccccccccCcccc
Q 018394 8 AGEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRG 87 (356)
Q Consensus 8 ~~~s~~v~~~~g~~v~LvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~~D~pGl~~~~~~~~~~~ 87 (356)
.++||++.+ |++++|+|+||||||||+++|+|...+ ..|.+.++|.++...+...........+++.
T Consensus 26 ~~isl~i~~--Ge~~~l~G~nGsGKSTLl~~l~Gl~~~-----------~~G~i~~~g~~i~~~~~~~~~~~~~~~i~~v 92 (233)
T PRK11629 26 HNVSFSIGE--GEMMAIVGSSGSGKSTLLHLLGGLDTP-----------TSGDVIFNGQPMSKLSSAAKAELRNQKLGFI 92 (233)
T ss_pred EeeEEEEcC--CcEEEEECCCCCCHHHHHHHHhcCCCC-----------CceEEEECCEEcCcCCHHHHHHHHhccEEEE
Confidence 588999999 889999999999999999999999766 7999999998875433211100001233444
Q ss_pred cccccccc---chhHHHHHHh--cCChHHHHHHHHHHHHHccC--ccccccCcccccceecccee---------eeecCC
Q 018394 88 RQVIAVSK---SSDIVLMVLD--ASKSEGHRQILTKELEAVGL--RLNKRPPQIYFKKKKTGGIS---------FNSTLP 151 (356)
Q Consensus 88 ~~~~~~~~---~~d~i~~v~d--~~~~~~~~~~i~~~L~~~~i--~l~~~~~~lS~g~~qr~~ia---------l~~DEp 151 (356)
.|....+. ..+.+.+... ........+.+.+.++.+++ .+++.+.+||+||+||++++ +++|||
T Consensus 93 ~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qrl~la~al~~~p~lllLDEP 172 (233)
T PRK11629 93 YQFHHLLPDFTALENVAMPLLIGKKKPAEINSRALEMLAAVGLEHRANHRPSELSGGERQRVAIARALVNNPRLVLADEP 172 (233)
T ss_pred ecCcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCC
Confidence 44433332 2444433222 11222334567889999999 57888999999999999988 999999
Q ss_pred CCCCCHHHHHHH---HHHhcc--cCcEEEEccCCCHH
Q 018394 152 LTHVDEKLCYQI---LHEYKI--HNAEVLFREDATVD 183 (356)
Q Consensus 152 ~~~LD~~~~~~i---l~~l~~--~~~~i~~thd~~~~ 183 (356)
|++||+.....+ ++.+.. +.+++++||+.+..
T Consensus 173 t~~LD~~~~~~l~~~l~~~~~~~g~tvii~sH~~~~~ 209 (233)
T PRK11629 173 TGNLDARNADSIFQLLGELNRLQGTAFLVVTHDLQLA 209 (233)
T ss_pred CCCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHH
Confidence 999999885544 455432 45899999997543
No 57
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=99.88 E-value=1.6e-22 Score=183.37 Aligned_cols=163 Identities=23% Similarity=0.265 Sum_probs=115.1
Q ss_pred CCCCeEEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCccccccccccccceEEEECCEeecccCccccccccccCcccc
Q 018394 8 AGEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRG 87 (356)
Q Consensus 8 ~~~s~~v~~~~g~~v~LvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~~D~pGl~~~~~~~~~~~ 87 (356)
.++||++.+ |++++|+|+|||||||||++|+|...+ ..|.+.++|.++.-.+...+.......+++.
T Consensus 22 ~~isl~i~~--G~~~~i~G~nGsGKSTLl~~i~G~~~~-----------~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~v 88 (221)
T TIGR02211 22 KGVSLSIGK--GEIVAIVGSSGSGKSTLLHLLGGLDNP-----------TSGEVLFNGQSLSKLSSNERAKLRNKKLGFI 88 (221)
T ss_pred eeeEEEEcC--CcEEEEECCCCCCHHHHHHHHhCCCCC-----------CCcEEEECCEEhhhcCHhHHHHHHHhcEEEE
Confidence 578999999 889999999999999999999999866 7999999998875433211100001223444
Q ss_pred cccccccc---chhHHHHHHhc--CChHHHHHHHHHHHHHccC--ccccccCcccccceecccee---------eeecCC
Q 018394 88 RQVIAVSK---SSDIVLMVLDA--SKSEGHRQILTKELEAVGL--RLNKRPPQIYFKKKKTGGIS---------FNSTLP 151 (356)
Q Consensus 88 ~~~~~~~~---~~d~i~~v~d~--~~~~~~~~~i~~~L~~~~i--~l~~~~~~lS~g~~qr~~ia---------l~~DEp 151 (356)
.|....+. ..+.+.+.... .......+.+.+.++.+++ .+++.+..||+||+||++++ +++|||
T Consensus 89 ~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~illlDEP 168 (221)
T TIGR02211 89 YQFHHLLPDFTALENVAMPLLIGKKSVKEAKERAYEMLEKVGLEHRINHRPSELSGGERQRVAIARALVNQPSLVLADEP 168 (221)
T ss_pred ecccccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhCCCCEEEEeCC
Confidence 44433332 24444432221 1222234567788999999 57888999999999999988 999999
Q ss_pred CCCCCHHHHHHH---HHHhcc--cCcEEEEccCCCHH
Q 018394 152 LTHVDEKLCYQI---LHEYKI--HNAEVLFREDATVD 183 (356)
Q Consensus 152 ~~~LD~~~~~~i---l~~l~~--~~~~i~~thd~~~~ 183 (356)
|++||+.....+ |..+.. +.+++++||+.+..
T Consensus 169 t~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~~~~ 205 (221)
T TIGR02211 169 TGNLDNNNAKIIFDLMLELNRELNTSFLVVTHDLELA 205 (221)
T ss_pred CCcCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHH
Confidence 999999885554 444432 45899999997543
No 58
>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional
Probab=99.88 E-value=3.9e-22 Score=195.31 Aligned_cols=178 Identities=15% Similarity=0.161 Sum_probs=127.2
Q ss_pred CCCCeEEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCccccccccccccceEEEECCEeecccCccccccccccCcccc
Q 018394 8 AGEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRG 87 (356)
Q Consensus 8 ~~~s~~v~~~~g~~v~LvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~~D~pGl~~~~~~~~~~~ 87 (356)
.++||++.+ |++++|+|+|||||||||++|+|...| ..|.|.++|.++.-.+...+.......+++.
T Consensus 45 ~~isl~i~~--Gei~~LvG~NGsGKSTLLr~I~Gl~~p-----------~sG~I~i~G~~i~~~~~~~l~~~~~~~igyv 111 (400)
T PRK10070 45 KDASLAIEE--GEIFVIMGLSGSGKSTMVRLLNRLIEP-----------TRGQVLIDGVDIAKISDAELREVRRKKIAMV 111 (400)
T ss_pred EeEEEEEcC--CCEEEEECCCCchHHHHHHHHHcCCCC-----------CCCEEEECCEECCcCCHHHHHHHHhCCEEEE
Confidence 588999999 889999999999999999999999876 7999999999876444322211112234555
Q ss_pred ccccccccc---hhHHHHHHhc--CChHHHHHHHHHHHHHccC--ccccccCcccccceecccee---------eeecCC
Q 018394 88 RQVIAVSKS---SDIVLMVLDA--SKSEGHRQILTKELEAVGL--RLNKRPPQIYFKKKKTGGIS---------FNSTLP 151 (356)
Q Consensus 88 ~~~~~~~~~---~d~i~~v~d~--~~~~~~~~~i~~~L~~~~i--~l~~~~~~lS~g~~qr~~ia---------l~~DEp 151 (356)
.|....+.. .+++.+.... .......+.+.+.|+.+++ .+++++.+||+||+||++|| +++|||
T Consensus 112 ~Q~~~l~~~~Tv~enl~~~~~~~~~~~~~~~~~~~e~L~~~gL~~~~~~~~~~LSgGq~QRv~LArAL~~~P~iLLLDEP 191 (400)
T PRK10070 112 FQSFALMPHMTVLDNTAFGMELAGINAEERREKALDALRQVGLENYAHSYPDELSGGMRQRVGLARALAINPDILLMDEA 191 (400)
T ss_pred ECCCcCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCChhhhcCcccCCHHHHHHHHHHHHHhcCCCEEEEECC
Confidence 555444433 4555544332 1222334567889999999 68899999999999999998 999999
Q ss_pred CCCCCHHHHHHH---HHHhc--ccCcEEEEccCCCHHHHHHHHhccccccceEEEeecCCC
Q 018394 152 LTHVDEKLCYQI---LHEYK--IHNAEVLFREDATVDDLIDVIEGNRKYMKCVYVYNKIDV 207 (356)
Q Consensus 152 ~~~LD~~~~~~i---l~~l~--~~~~~i~~thd~~~~~~~~~i~~~~~~~p~i~v~NK~Dl 207 (356)
|++||+.....+ |..+. .+.++|++|||.+.... .+..++++++.-+
T Consensus 192 ts~LD~~~r~~l~~~L~~l~~~~g~TIIivTHd~~~~~~---------~~Dri~vL~~G~i 243 (400)
T PRK10070 192 FSALDPLIRTEMQDELVKLQAKHQRTIVFISHDLDEAMR---------IGDRIAIMQNGEV 243 (400)
T ss_pred CccCCHHHHHHHHHHHHHHHHHCCCeEEEEECCHHHHHH---------hCCEEEEEECCEE
Confidence 999999885554 44443 24589999999764321 1355666665433
No 59
>TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT. This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate.
Probab=99.88 E-value=5e-22 Score=192.70 Aligned_cols=173 Identities=20% Similarity=0.163 Sum_probs=129.4
Q ss_pred CCCCeEEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCccccccccccccc--eEEEECCEeecccCccccccccccCcc
Q 018394 8 AGEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIP--GIIHYNDTKIQLLDLPGIIEGASEGKG 85 (356)
Q Consensus 8 ~~~s~~v~~~~g~~v~LvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~--G~i~~~g~~i~~~D~pGl~~~~~~~~~ 85 (356)
++++|++.. |++++|+|||||||||||++|+|...+ .. |.+.++|.++.-. +- ....++
T Consensus 22 ~~vsl~i~~--Ge~~~llGpsGsGKSTLLr~iaGl~~p-----------~~~~G~i~~~g~~~~~~--~~----~~r~ig 82 (362)
T TIGR03258 22 DDLSLEIEA--GELLALIGKSGCGKTTLLRAIAGFVKA-----------AGLTGRIAIADRDLTHA--PP----HKRGLA 82 (362)
T ss_pred eeeEEEECC--CCEEEEECCCCCCHHHHHHHHhCCCCC-----------CCCCEEEEECCEECCCC--CH----HHCCEE
Confidence 588999999 789999999999999999999999877 67 9999999887422 21 123456
Q ss_pred ccccccccccc---hhHHHHHHhcC--ChHHHHHHHHHHHHHccC--ccccccCcccccceecccee---------eeec
Q 018394 86 RGRQVIAVSKS---SDIVLMVLDAS--KSEGHRQILTKELEAVGL--RLNKRPPQIYFKKKKTGGIS---------FNST 149 (356)
Q Consensus 86 ~~~~~~~~~~~---~d~i~~v~d~~--~~~~~~~~i~~~L~~~~i--~l~~~~~~lS~g~~qr~~ia---------l~~D 149 (356)
+.+|....+.. .+++.+.+... ........+.++|+.++| .+++++.+||+||+||+++| +++|
T Consensus 83 ~vfQ~~~l~p~~tv~enl~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSgGq~QRvaLARAL~~~P~llLLD 162 (362)
T TIGR03258 83 LLFQNYALFPHLKVEDNVAFGLRAQKMPKADIAERVADALKLVGLGDAAAHLPAQLSGGMQQRIAIARAIAIEPDVLLLD 162 (362)
T ss_pred EEECCcccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCchhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEc
Confidence 66666555544 45555444322 222334568889999999 78999999999999999998 9999
Q ss_pred CCCCCCCHHHHHHHHHHh---cc---cCcEEEEccCCCHHHHHHHHhccccccceEEEeecCCCC
Q 018394 150 LPLTHVDEKLCYQILHEY---KI---HNAEVLFREDATVDDLIDVIEGNRKYMKCVYVYNKIDVI 208 (356)
Q Consensus 150 Ep~~~LD~~~~~~il~~l---~~---~~~~i~~thd~~~~~~~~~i~~~~~~~p~i~v~NK~Dl~ 208 (356)
|||++||+....++...+ .. +.+++++|||.+.... ....+++++..-+.
T Consensus 163 EP~s~LD~~~r~~l~~~l~~l~~~~~g~til~vTHd~~ea~~---------l~dri~vl~~G~i~ 218 (362)
T TIGR03258 163 EPLSALDANIRANMREEIAALHEELPELTILCVTHDQDDALT---------LADKAGIMKDGRLA 218 (362)
T ss_pred CccccCCHHHHHHHHHHHHHHHHhCCCCEEEEEeCCHHHHHH---------hCCEEEEEECCEEE
Confidence 999999998855555444 32 3589999999765422 13677888776554
No 60
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=99.88 E-value=5.8e-22 Score=178.88 Aligned_cols=162 Identities=19% Similarity=0.208 Sum_probs=115.1
Q ss_pred CCCCeEEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCccccccccccccceEEEECCEeecccCccccccccccCcccc
Q 018394 8 AGEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRG 87 (356)
Q Consensus 8 ~~~s~~v~~~~g~~v~LvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~~D~pGl~~~~~~~~~~~ 87 (356)
.++||++.+ |++++|+|+||||||||+++|+|...+ ..|.+.++|.++...+.... ......+++.
T Consensus 19 ~~is~~i~~--G~~~~l~G~nGsGKSTLl~~i~Gl~~~-----------~~G~i~~~g~~~~~~~~~~~-~~~~~~i~~~ 84 (214)
T TIGR02673 19 HDVSLHIRK--GEFLFLTGPSGAGKTTLLKLLYGALTP-----------SRGQVRIAGEDVNRLRGRQL-PLLRRRIGVV 84 (214)
T ss_pred cceeEEEcC--CCEEEEECCCCCCHHHHHHHHhCCCCC-----------CCceEEECCEEcccCCHHHH-HHHHhheEEE
Confidence 689999999 889999999999999999999999766 78999999988754321110 0011223343
Q ss_pred cccccccc---chhHHHHHHhcC--ChHHHHHHHHHHHHHccC--ccccccCcccccceecccee---------eeecCC
Q 018394 88 RQVIAVSK---SSDIVLMVLDAS--KSEGHRQILTKELEAVGL--RLNKRPPQIYFKKKKTGGIS---------FNSTLP 151 (356)
Q Consensus 88 ~~~~~~~~---~~d~i~~v~d~~--~~~~~~~~i~~~L~~~~i--~l~~~~~~lS~g~~qr~~ia---------l~~DEp 151 (356)
.|....+. ..+.+.+..... ......+.+.+.++.+++ .+++.+..||+||+||++++ +++|||
T Consensus 85 ~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~lllLDEP 164 (214)
T TIGR02673 85 FQDFRLLPDRTVYENVALPLEVRGKKEREIQRRVGAALRQVGLEHKADAFPEQLSGGEQQRVAIARAIVNSPPLLLADEP 164 (214)
T ss_pred ecChhhccCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhCCCCEEEEeCC
Confidence 44333332 244443332211 222334567888999998 57888999999999999988 999999
Q ss_pred CCCCCHHHHHHH---HHHhcc-cCcEEEEccCCCHH
Q 018394 152 LTHVDEKLCYQI---LHEYKI-HNAEVLFREDATVD 183 (356)
Q Consensus 152 ~~~LD~~~~~~i---l~~l~~-~~~~i~~thd~~~~ 183 (356)
|++||+.....+ ++++.. +.+++++||+....
T Consensus 165 t~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~~~ 200 (214)
T TIGR02673 165 TGNLDPDLSERILDLLKRLNKRGTTVIVATHDLSLV 200 (214)
T ss_pred cccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHH
Confidence 999999885544 444432 46999999997543
No 61
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.88 E-value=8e-22 Score=177.92 Aligned_cols=156 Identities=21% Similarity=0.225 Sum_probs=113.2
Q ss_pred CCCCeEEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCccccccccccccceEEEECCEeecccCccccccccccCcccc
Q 018394 8 AGEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRG 87 (356)
Q Consensus 8 ~~~s~~v~~~~g~~v~LvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~~D~pGl~~~~~~~~~~~ 87 (356)
.++||++.+ |++++|+|+||||||||+++|+|...| ..|.+.++|.++.-.. . ....+++.
T Consensus 17 ~~vs~~i~~--Ge~~~i~G~nGsGKSTLl~~l~G~~~p-----------~~G~i~~~g~~~~~~~--~----~~~~i~~v 77 (213)
T cd03259 17 DDLSLTVEP--GEFLALLGPSGCGKTTLLRLIAGLERP-----------DSGEILIDGRDVTGVP--P----ERRNIGMV 77 (213)
T ss_pred cceeEEEcC--CcEEEEECCCCCCHHHHHHHHhCCCCC-----------CCeEEEECCEEcCcCc--h----hhccEEEE
Confidence 689999999 889999999999999999999999866 7999999998764221 1 11223333
Q ss_pred cccccccc---chhHHHHHHhcC--ChHHHHHHHHHHHHHccC--ccccccCcccccceecccee---------eeecCC
Q 018394 88 RQVIAVSK---SSDIVLMVLDAS--KSEGHRQILTKELEAVGL--RLNKRPPQIYFKKKKTGGIS---------FNSTLP 151 (356)
Q Consensus 88 ~~~~~~~~---~~d~i~~v~d~~--~~~~~~~~i~~~L~~~~i--~l~~~~~~lS~g~~qr~~ia---------l~~DEp 151 (356)
.|....+. ..+.+.+..... ......+.+.+.++.+++ .+++++..||+||+||+.|+ +++|||
T Consensus 78 ~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrl~la~al~~~p~~lllDEP 157 (213)
T cd03259 78 FQDYALFPHLTVAENIAFGLKLRGVPKAEIRARVRELLELVGLEGLLNRYPHELSGGQQQRVALARALAREPSLLLLDEP 157 (213)
T ss_pred cCchhhccCCcHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCChhhhhcChhhCCHHHHHHHHHHHHHhcCCCEEEEcCC
Confidence 44332222 244444332221 122234567788999999 67888999999999999988 999999
Q ss_pred CCCCCHHHHHHHH---HHhcc--cCcEEEEccCCCH
Q 018394 152 LTHVDEKLCYQIL---HEYKI--HNAEVLFREDATV 182 (356)
Q Consensus 152 ~~~LD~~~~~~il---~~l~~--~~~~i~~thd~~~ 182 (356)
|++||+.....++ .++.. +.+++++||+...
T Consensus 158 t~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~ 193 (213)
T cd03259 158 LSALDAKLREELREELKELQRELGITTIYVTHDQEE 193 (213)
T ss_pred cccCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHHH
Confidence 9999998855544 44432 4589999999754
No 62
>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.87 E-value=7.4e-22 Score=184.59 Aligned_cols=162 Identities=17% Similarity=0.187 Sum_probs=115.4
Q ss_pred CCCCeEEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCccccccccccccceEEEECCEeecccCccccccccccCcccc
Q 018394 8 AGEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRG 87 (356)
Q Consensus 8 ~~~s~~v~~~~g~~v~LvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~~D~pGl~~~~~~~~~~~ 87 (356)
.+++|++.+ |++++|+|+||||||||+++|+|...+ ..|.+.++|.++.-.+...+.......+++.
T Consensus 41 ~~is~~i~~--Ge~~~l~G~nGsGKSTLl~~L~Gl~~p-----------~~G~i~i~g~~~~~~~~~~~~~~~~~~i~~v 107 (269)
T cd03294 41 NDVSLDVRE--GEIFVIMGLSGSGKSTLLRCINRLIEP-----------TSGKVLIDGQDIAAMSRKELRELRRKKISMV 107 (269)
T ss_pred eeeEEEEcC--CCEEEEECCCCCCHHHHHHHHhcCCCC-----------CCeEEEECCEEccccChhhhhhhhcCcEEEE
Confidence 588999999 889999999999999999999999876 7899999998765333211110011233444
Q ss_pred ccccccccc---hhHHHHHHhcC--ChHHHHHHHHHHHHHccC--ccccccCcccccceecccee---------eeecCC
Q 018394 88 RQVIAVSKS---SDIVLMVLDAS--KSEGHRQILTKELEAVGL--RLNKRPPQIYFKKKKTGGIS---------FNSTLP 151 (356)
Q Consensus 88 ~~~~~~~~~---~d~i~~v~d~~--~~~~~~~~i~~~L~~~~i--~l~~~~~~lS~g~~qr~~ia---------l~~DEp 151 (356)
.|....+.. .+.+.+..... ......+.+.+.|+.+++ .+++.+..||+||+||++|| +++|||
T Consensus 108 ~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrv~lAral~~~p~illLDEP 187 (269)
T cd03294 108 FQSFALLPHRTVLENVAFGLEVQGVPRAEREERAAEALELVGLEGWEHKYPDELSGGMQQRVGLARALAVDPDILLMDEA 187 (269)
T ss_pred ecCcccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCC
Confidence 444333322 44443332211 122234567788999999 67899999999999999998 999999
Q ss_pred CCCCCHHHHHHH---HHHhcc--cCcEEEEccCCCH
Q 018394 152 LTHVDEKLCYQI---LHEYKI--HNAEVLFREDATV 182 (356)
Q Consensus 152 ~~~LD~~~~~~i---l~~l~~--~~~~i~~thd~~~ 182 (356)
|++||+.....+ +.++.. +.+++++||+...
T Consensus 188 t~~LD~~~~~~l~~~l~~~~~~~g~tiii~tH~~~~ 223 (269)
T cd03294 188 FSALDPLIRREMQDELLRLQAELQKTIVFITHDLDE 223 (269)
T ss_pred CccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHH
Confidence 999999885544 445532 4699999999754
No 63
>PRK13536 nodulation factor exporter subunit NodI; Provisional
Probab=99.87 E-value=5.6e-22 Score=190.97 Aligned_cols=182 Identities=16% Similarity=0.096 Sum_probs=129.0
Q ss_pred CCCCeEEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCccccccccccccceEEEECCEeecccCccccccccccCcccc
Q 018394 8 AGEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRG 87 (356)
Q Consensus 8 ~~~s~~v~~~~g~~v~LvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~~D~pGl~~~~~~~~~~~ 87 (356)
.++||++.+ |+++||+|||||||||||++|+|...| ..|.+.++|.++.-. + ......+++.
T Consensus 58 ~~is~~i~~--Gei~gLlGpNGaGKSTLl~~L~Gl~~p-----------~~G~i~i~G~~~~~~--~---~~~~~~ig~v 119 (340)
T PRK13536 58 NGLSFTVAS--GECFGLLGPNGAGKSTIARMILGMTSP-----------DAGKITVLGVPVPAR--A---RLARARIGVV 119 (340)
T ss_pred eeeEEEEcC--CCEEEEECCCCCCHHHHHHHHHcCCCC-----------CceEEEECCEECCcc--h---HHHhccEEEE
Confidence 689999999 889999999999999999999999877 899999999886421 1 1112334555
Q ss_pred ccccccc---cchhHHHHHHhcC--ChHHHHHHHHHHHHHccC--ccccccCcccccceecccee---------eeecCC
Q 018394 88 RQVIAVS---KSSDIVLMVLDAS--KSEGHRQILTKELEAVGL--RLNKRPPQIYFKKKKTGGIS---------FNSTLP 151 (356)
Q Consensus 88 ~~~~~~~---~~~d~i~~v~d~~--~~~~~~~~i~~~L~~~~i--~l~~~~~~lS~g~~qr~~ia---------l~~DEp 151 (356)
.|....+ ...+++.+..... ......+.+.++++.+++ ..++++..||+||+||++|| +++|||
T Consensus 120 ~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~L~~~~~~~~~~LS~G~kqrv~lA~aL~~~P~lLiLDEP 199 (340)
T PRK13536 120 PQFDNLDLEFTVRENLLVFGRYFGMSTREIEAVIPSLLEFARLESKADARVSDLSGGMKRRLTLARALINDPQLLILDEP 199 (340)
T ss_pred eCCccCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhCCChhhCCHHHHHHHHHHHHHhcCCCEEEEECC
Confidence 5543333 2345444332221 122234456788898998 57889999999999999998 999999
Q ss_pred CCCCCHHHHHH---HHHHhcc-cCcEEEEccCCCHHHHHHHHhccccccceEEEeecCCCCChhhHHHH
Q 018394 152 LTHVDEKLCYQ---ILHEYKI-HNAEVLFREDATVDDLIDVIEGNRKYMKCVYVYNKIDVIGIDDVDKL 216 (356)
Q Consensus 152 ~~~LD~~~~~~---il~~l~~-~~~~i~~thd~~~~~~~~~i~~~~~~~p~i~v~NK~Dl~~~~~~~~l 216 (356)
|++||+....+ +++++.. +.+++++||+.+..+- .+..++++++.-+......+.+
T Consensus 200 t~gLD~~~r~~l~~~l~~l~~~g~tilisSH~l~e~~~---------~~d~i~il~~G~i~~~g~~~~l 259 (340)
T PRK13536 200 TTGLDPHARHLIWERLRSLLARGKTILLTTHFMEEAER---------LCDRLCVLEAGRKIAEGRPHAL 259 (340)
T ss_pred CCCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHH---------hCCEEEEEECCEEEEEcCHHHH
Confidence 99999998554 4555543 4599999999865432 2467788887655433334444
No 64
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=99.87 E-value=6.3e-22 Score=177.60 Aligned_cols=154 Identities=19% Similarity=0.193 Sum_probs=111.2
Q ss_pred CCCCeEEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCccccccccccccceEEEECCEeecccCccccccccccCcccc
Q 018394 8 AGEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRG 87 (356)
Q Consensus 8 ~~~s~~v~~~~g~~v~LvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~~D~pGl~~~~~~~~~~~ 87 (356)
.+++|++.+ |++++|+|+|||||||||++|+|...| ..|.+.++|.++.. . .....+++.
T Consensus 17 ~~v~~~i~~--Ge~~~i~G~nGsGKSTLl~~l~Gl~~p-----------~~G~i~~~g~~~~~---~----~~~~~i~~~ 76 (205)
T cd03226 17 DDLSLDLYA--GEIIALTGKNGAGKTTLAKILAGLIKE-----------SSGSILLNGKPIKA---K----ERRKSIGYV 76 (205)
T ss_pred eeeeEEEcC--CCEEEEECCCCCCHHHHHHHHhcCCCC-----------CceEEEECCEEhhh---H----HhhcceEEE
Confidence 588999999 889999999999999999999999876 79999999987632 0 011123333
Q ss_pred ccccc----cccchhHHHHHHhcCChHHHHHHHHHHHHHccC--ccccccCcccccceecccee---------eeecCCC
Q 018394 88 RQVIA----VSKSSDIVLMVLDASKSEGHRQILTKELEAVGL--RLNKRPPQIYFKKKKTGGIS---------FNSTLPL 152 (356)
Q Consensus 88 ~~~~~----~~~~~d~i~~v~d~~~~~~~~~~i~~~L~~~~i--~l~~~~~~lS~g~~qr~~ia---------l~~DEp~ 152 (356)
.|... .....+.+.+...... .....+.+.++.+++ .+++.+..||+||+||+++| +++||||
T Consensus 77 ~q~~~~~~~~~tv~e~l~~~~~~~~--~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt 154 (205)
T cd03226 77 MQDVDYQLFTDSVREELLLGLKELD--AGNEQAETVLKDLDLYALKERHPLSLSGGQKQRLAIAAALLSGKDLLIFDEPT 154 (205)
T ss_pred ecChhhhhhhccHHHHHhhhhhhcC--ccHHHHHHHHHHcCCchhcCCCchhCCHHHHHHHHHHHHHHhCCCEEEEeCCC
Confidence 33321 1122344433221111 122467888999999 67889999999999999998 9999999
Q ss_pred CCCCHHHHHHH---HHHhc-ccCcEEEEccCCCHH
Q 018394 153 THVDEKLCYQI---LHEYK-IHNAEVLFREDATVD 183 (356)
Q Consensus 153 ~~LD~~~~~~i---l~~l~-~~~~~i~~thd~~~~ 183 (356)
++||+.....+ ++++. .+.+++++||+....
T Consensus 155 ~~LD~~~~~~l~~~l~~~~~~~~tii~~sH~~~~~ 189 (205)
T cd03226 155 SGLDYKNMERVGELIRELAAQGKAVIVITHDYEFL 189 (205)
T ss_pred ccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHH
Confidence 99999885544 44443 345899999997643
No 65
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=99.87 E-value=6.4e-22 Score=181.24 Aligned_cols=175 Identities=21% Similarity=0.241 Sum_probs=122.0
Q ss_pred CCCCeEEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCccccccccccccceEEEECCEeecccCccccccccccCcccc
Q 018394 8 AGEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRG 87 (356)
Q Consensus 8 ~~~s~~v~~~~g~~v~LvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~~D~pGl~~~~~~~~~~~ 87 (356)
.+++|++.+ |++++|+|+||||||||+++|+|...+ ..|.+.++|.++.-.+.... ....+++.
T Consensus 17 ~~vsl~i~~--Ge~~~l~G~nGsGKSTLl~~l~Gl~~~-----------~~G~i~~~g~~~~~~~~~~~---~~~~i~~v 80 (236)
T cd03219 17 DDVSFSVRP--GEIHGLIGPNGAGKTTLFNLISGFLRP-----------TSGSVLFDGEDITGLPPHEI---ARLGIGRT 80 (236)
T ss_pred cCceEEecC--CcEEEEECCCCCCHHHHHHHHcCCCCC-----------CCceEEECCEECCCCCHHHH---HhcCEEEE
Confidence 688999999 889999999999999999999999866 78999999987654322111 01223333
Q ss_pred cccccccc---chhHHHHHHhcCC------------hHHHHHHHHHHHHHccC--ccccccCcccccceecccee-----
Q 018394 88 RQVIAVSK---SSDIVLMVLDASK------------SEGHRQILTKELEAVGL--RLNKRPPQIYFKKKKTGGIS----- 145 (356)
Q Consensus 88 ~~~~~~~~---~~d~i~~v~d~~~------------~~~~~~~i~~~L~~~~i--~l~~~~~~lS~g~~qr~~ia----- 145 (356)
.|....+. ..+.+.+...... .....+.+.+.++.+++ .+++++.+||+||+||++++
T Consensus 81 ~q~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~ 160 (236)
T cd03219 81 FQIPRLFPELTVLENVMVAAQARTGSGLLLARARREEREARERAEELLERVGLADLADRPAGELSYGQQRRLEIARALAT 160 (236)
T ss_pred ecccccccCCCHHHHHHHHHhhccccccccccccccHHHHHHHHHHHHHHcCccchhhCChhhCCHHHHHHHHHHHHHhc
Confidence 44333332 2444443322111 12234467888999998 67888999999999999988
Q ss_pred ----eeecCCCCCCCHHHHHH---HHHHhc-ccCcEEEEccCCCHHHHHHHHhccccccceEEEeecCCC
Q 018394 146 ----FNSTLPLTHVDEKLCYQ---ILHEYK-IHNAEVLFREDATVDDLIDVIEGNRKYMKCVYVYNKIDV 207 (356)
Q Consensus 146 ----l~~DEp~~~LD~~~~~~---il~~l~-~~~~~i~~thd~~~~~~~~~i~~~~~~~p~i~v~NK~Dl 207 (356)
+++||||++||+..... +++++. .+.++|++||+.+.... .+..++++++.-+
T Consensus 161 ~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~vsH~~~~~~~---------~~d~i~~l~~G~i 221 (236)
T cd03219 161 DPKLLLLDEPAAGLNPEETEELAELIRELRERGITVLLVEHDMDVVMS---------LADRVTVLDQGRV 221 (236)
T ss_pred CCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHH---------hCCEEEEEeCCEE
Confidence 99999999999987554 444544 34589999999765322 1355666665433
No 66
>PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional
Probab=99.87 E-value=7.4e-22 Score=192.30 Aligned_cols=172 Identities=19% Similarity=0.245 Sum_probs=125.7
Q ss_pred CCCCeEEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCccccccccccccceEEEECCEeecccCccccccccccCcccc
Q 018394 8 AGEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRG 87 (356)
Q Consensus 8 ~~~s~~v~~~~g~~v~LvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~~D~pGl~~~~~~~~~~~ 87 (356)
+++||++.+ |++++|+|+|||||||||++|+|...| ..|.|.++|.++..... ....+++.
T Consensus 20 ~~vsl~i~~--Ge~~~l~G~nGsGKSTLL~~iaGl~~p-----------~~G~I~~~g~~i~~~~~------~~~~i~~v 80 (369)
T PRK11000 20 KDINLDIHE--GEFVVFVGPSGCGKSTLLRMIAGLEDI-----------TSGDLFIGEKRMNDVPP------AERGVGMV 80 (369)
T ss_pred eeeEEEEcC--CCEEEEECCCCCcHHHHHHHHhCCCCC-----------CceEEEECCEECCCCCH------hHCCEEEE
Confidence 588999999 789999999999999999999999876 79999999988753211 12235555
Q ss_pred ccccccccc---hhHHHHHHhcC--ChHHHHHHHHHHHHHccC--ccccccCcccccceecccee---------eeecCC
Q 018394 88 RQVIAVSKS---SDIVLMVLDAS--KSEGHRQILTKELEAVGL--RLNKRPPQIYFKKKKTGGIS---------FNSTLP 151 (356)
Q Consensus 88 ~~~~~~~~~---~d~i~~v~d~~--~~~~~~~~i~~~L~~~~i--~l~~~~~~lS~g~~qr~~ia---------l~~DEp 151 (356)
+|....+.. .+++.+..... ......+.+.+.|+.+++ .+++++.+||+||+||++|| +++|||
T Consensus 81 ~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~~~~~~LSgGq~QRvaLAraL~~~P~lLLLDEP 160 (369)
T PRK11000 81 FQSYALYPHLSVAENMSFGLKLAGAKKEEINQRVNQVAEVLQLAHLLDRKPKALSGGQRQRVAIGRTLVAEPSVFLLDEP 160 (369)
T ss_pred eCCcccCCCCCHHHHHHhHHhhcCCCHHHHHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCC
Confidence 665544433 45555443321 222334568889999999 67899999999999999998 999999
Q ss_pred CCCCCHHHHHHH---HHHhcc--cCcEEEEccCCCHHHHHHHHhccccccceEEEeecCCC
Q 018394 152 LTHVDEKLCYQI---LHEYKI--HNAEVLFREDATVDDLIDVIEGNRKYMKCVYVYNKIDV 207 (356)
Q Consensus 152 ~~~LD~~~~~~i---l~~l~~--~~~~i~~thd~~~~~~~~~i~~~~~~~p~i~v~NK~Dl 207 (356)
|++||+.....+ |+++.. +.++|++|||.+.... .+..+++++..-+
T Consensus 161 ts~LD~~~~~~l~~~L~~l~~~~g~tvI~vTHd~~~~~~---------~~d~i~vl~~G~i 212 (369)
T PRK11000 161 LSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQVEAMT---------LADKIVVLDAGRV 212 (369)
T ss_pred cccCCHHHHHHHHHHHHHHHHHhCCEEEEEeCCHHHHHH---------hCCEEEEEECCEE
Confidence 999999885544 444432 4589999999764321 1356667765443
No 67
>PRK10851 sulfate/thiosulfate transporter subunit; Provisional
Probab=99.87 E-value=6.9e-22 Score=191.28 Aligned_cols=173 Identities=19% Similarity=0.229 Sum_probs=127.9
Q ss_pred CCCCeEEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCccccccccccccceEEEECCEeecccCccccccccccCcccc
Q 018394 8 AGEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRG 87 (356)
Q Consensus 8 ~~~s~~v~~~~g~~v~LvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~~D~pGl~~~~~~~~~~~ 87 (356)
.++||++.+ |++++|+|||||||||||++|+|...+ ..|.|.++|.++...+. ....+++.
T Consensus 19 ~~isl~i~~--Ge~~~llGpsGsGKSTLLr~IaGl~~p-----------~~G~I~i~g~~i~~~~~------~~r~i~~v 79 (353)
T PRK10851 19 NDISLDIPS--GQMVALLGPSGSGKTTLLRIIAGLEHQ-----------TSGHIRFHGTDVSRLHA------RDRKVGFV 79 (353)
T ss_pred EEeEEEEcC--CCEEEEECCCCCCHHHHHHHHhCCCCC-----------CCcEEEECCEECCCCCH------HHCCEEEE
Confidence 578999999 889999999999999999999999876 79999999998753221 12345666
Q ss_pred ccccccccc---hhHHHHHHhc------CChHHHHHHHHHHHHHccC--ccccccCcccccceecccee---------ee
Q 018394 88 RQVIAVSKS---SDIVLMVLDA------SKSEGHRQILTKELEAVGL--RLNKRPPQIYFKKKKTGGIS---------FN 147 (356)
Q Consensus 88 ~~~~~~~~~---~d~i~~v~d~------~~~~~~~~~i~~~L~~~~i--~l~~~~~~lS~g~~qr~~ia---------l~ 147 (356)
+|....+.. .+++.+.... .......+.+.+.|+.+++ .+++++.+||+||+||++|| ++
T Consensus 80 ~Q~~~l~p~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGq~QRvalArAL~~~P~llL 159 (353)
T PRK10851 80 FQHYALFRHMTVFDNIAFGLTVLPRRERPNAAAIKAKVTQLLEMVQLAHLADRYPAQLSGGQKQRVALARALAVEPQILL 159 (353)
T ss_pred ecCcccCCCCcHHHHHHhhhhhcccccCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHhcCCCEEE
Confidence 666555543 4445443322 1122334578889999999 68899999999999999998 99
Q ss_pred ecCCCCCCCHHHHHHHHH---Hhcc--cCcEEEEccCCCHHHHHHHHhccccccceEEEeecCCCC
Q 018394 148 STLPLTHVDEKLCYQILH---EYKI--HNAEVLFREDATVDDLIDVIEGNRKYMKCVYVYNKIDVI 208 (356)
Q Consensus 148 ~DEp~~~LD~~~~~~il~---~l~~--~~~~i~~thd~~~~~~~~~i~~~~~~~p~i~v~NK~Dl~ 208 (356)
+||||++||......+++ ++.. +.+++++|||...... ....++++++.-+.
T Consensus 160 LDEP~s~LD~~~r~~l~~~L~~l~~~~g~tii~vTHd~~ea~~---------~~Dri~vl~~G~i~ 216 (353)
T PRK10851 160 LDEPFGALDAQVRKELRRWLRQLHEELKFTSVFVTHDQEEAME---------VADRVVVMSQGNIE 216 (353)
T ss_pred EeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHH---------hCCEEEEEECCEEE
Confidence 999999999988555444 4432 4599999999765322 23667777766543
No 68
>PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional
Probab=99.87 E-value=6.6e-22 Score=190.97 Aligned_cols=177 Identities=19% Similarity=0.169 Sum_probs=125.9
Q ss_pred CCCCeEEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCccccccccccccceEEEECCEeecccCccccccccccCcccc
Q 018394 8 AGEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRG 87 (356)
Q Consensus 8 ~~~s~~v~~~~g~~v~LvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~~D~pGl~~~~~~~~~~~ 87 (356)
.++||++.+ |++++|+|+||||||||+++|+|...| ..|.+.++|.++.-.+...+. .....+++.
T Consensus 22 ~~vsl~i~~--Gei~~iiG~nGsGKSTLlk~L~Gl~~p-----------~~G~I~~~g~~i~~~~~~~~~-~~~~~ig~v 87 (343)
T PRK11153 22 NNVSLHIPA--GEIFGVIGASGAGKSTLIRCINLLERP-----------TSGRVLVDGQDLTALSEKELR-KARRQIGMI 87 (343)
T ss_pred EeeEEEEcC--CCEEEEECCCCCcHHHHHHHHhCCCCC-----------CceEEEECCEECCcCCHHHHH-HHhcCEEEE
Confidence 588999999 889999999999999999999999876 799999999987543321111 112234555
Q ss_pred cccccccc---chhHHHHHHhcC--ChHHHHHHHHHHHHHccC--ccccccCcccccceecccee---------eeecCC
Q 018394 88 RQVIAVSK---SSDIVLMVLDAS--KSEGHRQILTKELEAVGL--RLNKRPPQIYFKKKKTGGIS---------FNSTLP 151 (356)
Q Consensus 88 ~~~~~~~~---~~d~i~~v~d~~--~~~~~~~~i~~~L~~~~i--~l~~~~~~lS~g~~qr~~ia---------l~~DEp 151 (356)
.|....+. ..+.+.+..... ......+.+.+.|+.+++ .+++++.+||+||+||++|| +++|||
T Consensus 88 ~q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~qRv~lAraL~~~p~iLlLDEP 167 (343)
T PRK11153 88 FQHFNLLSSRTVFDNVALPLELAGTPKAEIKARVTELLELVGLSDKADRYPAQLSGGQKQRVAIARALASNPKVLLCDEA 167 (343)
T ss_pred eCCCccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCC
Confidence 55443333 245554433221 222334567888999999 67889999999999999998 999999
Q ss_pred CCCCCHHHHHHH---HHHhcc--cCcEEEEccCCCHHHHHHHHhccccccceEEEeecCCC
Q 018394 152 LTHVDEKLCYQI---LHEYKI--HNAEVLFREDATVDDLIDVIEGNRKYMKCVYVYNKIDV 207 (356)
Q Consensus 152 ~~~LD~~~~~~i---l~~l~~--~~~~i~~thd~~~~~~~~~i~~~~~~~p~i~v~NK~Dl 207 (356)
|++||+.....+ |+++.. +.+++++||+.+.... .+..++++++.-+
T Consensus 168 ts~LD~~~~~~l~~~L~~l~~~~g~tiilvtH~~~~i~~---------~~d~v~~l~~G~i 219 (343)
T PRK11153 168 TSALDPATTRSILELLKDINRELGLTIVLITHEMDVVKR---------ICDRVAVIDAGRL 219 (343)
T ss_pred cccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHH---------hCCEEEEEECCEE
Confidence 999999885544 445432 4589999999764321 2356677766544
No 69
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=99.87 E-value=9.6e-22 Score=177.08 Aligned_cols=159 Identities=21% Similarity=0.211 Sum_probs=113.5
Q ss_pred CCCCeEEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCccccccccccccceEEEECCEeecccCccccccccccCcccc
Q 018394 8 AGEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRG 87 (356)
Q Consensus 8 ~~~s~~v~~~~g~~v~LvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~~D~pGl~~~~~~~~~~~ 87 (356)
.+++|++.+ |++++|+|+||||||||+++|+|...+ ..|.+.++|.++...+...+ ...+++.
T Consensus 18 ~~vs~~i~~--G~~~~l~G~nGsGKSTLl~~l~G~~~~-----------~~G~i~~~g~~~~~~~~~~~----~~~i~~~ 80 (211)
T cd03225 18 DDISLTIKK--GEFVLIVGPNGSGKSTLLRLLNGLLGP-----------TSGEVLVDGKDLTKLSLKEL----RRKVGLV 80 (211)
T ss_pred cceEEEEcC--CcEEEEECCCCCCHHHHHHHHhcCCCC-----------CCceEEECCEEcccCCHHHH----HhhceEE
Confidence 688999999 889999999999999999999999866 78999999987653321111 1223333
Q ss_pred ccccc----cccchhHHHHHHhcC--ChHHHHHHHHHHHHHccC--ccccccCcccccceecccee---------eeecC
Q 018394 88 RQVIA----VSKSSDIVLMVLDAS--KSEGHRQILTKELEAVGL--RLNKRPPQIYFKKKKTGGIS---------FNSTL 150 (356)
Q Consensus 88 ~~~~~----~~~~~d~i~~v~d~~--~~~~~~~~i~~~L~~~~i--~l~~~~~~lS~g~~qr~~ia---------l~~DE 150 (356)
.|... .....+.+.+..... ......+.+.+.++.+++ .+++++..||+||+||++++ +++||
T Consensus 81 ~q~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~~p~llllDE 160 (211)
T cd03225 81 FQNPDDQFFGPTVEEEVAFGLENLGLPEEEIEERVEEALELVGLEGLRDRSPFTLSGGQKQRVAIAGVLAMDPDILLLDE 160 (211)
T ss_pred ecChhhhcCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEcC
Confidence 43321 112244443322211 222234457788999998 67889999999999999988 99999
Q ss_pred CCCCCCHHHHHHH---HHHhcc-cCcEEEEccCCCHH
Q 018394 151 PLTHVDEKLCYQI---LHEYKI-HNAEVLFREDATVD 183 (356)
Q Consensus 151 p~~~LD~~~~~~i---l~~l~~-~~~~i~~thd~~~~ 183 (356)
||++||+.....+ +.++.. +.+++++||+....
T Consensus 161 Pt~~LD~~~~~~~~~~l~~~~~~~~tvi~~sH~~~~~ 197 (211)
T cd03225 161 PTAGLDPAGRRELLELLKKLKAEGKTIIIVTHDLDLL 197 (211)
T ss_pred CcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHH
Confidence 9999999885554 444433 45899999997543
No 70
>COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=99.87 E-value=5.3e-22 Score=184.65 Aligned_cols=193 Identities=20% Similarity=0.188 Sum_probs=130.6
Q ss_pred CCCCeEEEecCCcEEEEEcCCCCcHHHHHHHHHcCCC-CccccccccccccceEEEECCEeecccCccccccccccCccc
Q 018394 8 AGEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHS-EAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGR 86 (356)
Q Consensus 8 ~~~s~~v~~~~g~~v~LvG~~gaGKSTLln~L~g~~~-~vs~~p~TT~~~~~G~i~~~g~~i~~~D~pGl~~~~~~~~~~ 86 (356)
.|+||++.+ |+++||||.+||||||+.++|+|... +.+ ....|.|.|+|.++.-++...+..-....+++
T Consensus 22 ~~vs~~i~~--GE~lgiVGESGsGKS~~~~aim~llp~~~~-------~i~~G~i~f~g~~l~~l~~~~~~~iRG~~I~m 92 (316)
T COG0444 22 DGVSFELKK--GEILGIVGESGSGKSVLAKAIMGLLPKPNA-------RIVGGEILFDGKDLLSLSEKELRKIRGKEIAM 92 (316)
T ss_pred eceeEEEcC--CcEEEEEcCCCCCHHHHHHHHHhccCCCCC-------eEeeeEEEECCcccccCCHHHHHhhcCceEEE
Confidence 689999999 88999999999999999999999875 311 12578999999986555432221112223444
Q ss_pred ccccccc-cc----chhHHHHHHhcC----ChHHHHHHHHHHHHHccC-----ccccccCcccccceecccee-------
Q 018394 87 GRQVIAV-SK----SSDIVLMVLDAS----KSEGHRQILTKELEAVGL-----RLNKRPPQIYFKKKKTGGIS------- 145 (356)
Q Consensus 87 ~~~~~~~-~~----~~d~i~~v~d~~----~~~~~~~~i~~~L~~~~i-----~l~~~~~~lS~g~~qr~~ia------- 145 (356)
.+|.... +. --+-+..++... ...+..+++.+.|+.++| .++.+|.+|||||+||+.||
T Consensus 93 IfQ~p~~sLnPv~~Ig~Qi~E~l~~h~~~~~~~ea~~~a~~~L~~Vgi~~~~~~~~~YPhelSGGMrQRV~IAmala~~P 172 (316)
T COG0444 93 IFQDPMTSLNPVMTIGDQIAEVLRLHGKGLSKKEAKERAIELLELVGIPDPERRLKSYPHELSGGMRQRVMIAMALALNP 172 (316)
T ss_pred EEcCchhhcCChhhHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHcCCCCHHHHHhhCCcccCCcHHHHHHHHHHHhCCC
Confidence 4444211 11 011122222211 123346678899999999 57899999999999999988
Q ss_pred --eeecCCCCCCCHHHHHHHHHH---hcc--cCcEEEEccCCCHHHHHHHHhccccccceEEEeecCCCCChhhHHHHhc
Q 018394 146 --FNSTLPLTHVDEKLCYQILHE---YKI--HNAEVLFREDATVDDLIDVIEGNRKYMKCVYVYNKIDVIGIDDVDKLAR 218 (356)
Q Consensus 146 --l~~DEp~~~LD~~~~~~il~~---l~~--~~~~i~~thd~~~~~~~~~i~~~~~~~p~i~v~NK~Dl~~~~~~~~l~~ 218 (356)
+++||||++||.....++|+. +.. +.+++++|||+.+..- .++.|.|+...-++.....+++..
T Consensus 173 ~LlIADEPTTALDvt~QaqIl~Ll~~l~~e~~~aiilITHDl~vva~---------~aDri~VMYaG~iVE~g~~~~i~~ 243 (316)
T COG0444 173 KLLIADEPTTALDVTVQAQILDLLKELQREKGTALILITHDLGVVAE---------IADRVAVMYAGRIVEEGPVEEIFK 243 (316)
T ss_pred CEEEeCCCcchhhHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHH---------hcceEEEEECcEEEEeCCHHHHhc
Confidence 999999999999875555554 443 4599999999875422 135677776665554444445443
No 71
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=99.87 E-value=5e-22 Score=181.07 Aligned_cols=162 Identities=21% Similarity=0.241 Sum_probs=115.1
Q ss_pred CCCCeEEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCccccccccccccceEEEECCEeecccCccccccccccCcccc
Q 018394 8 AGEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRG 87 (356)
Q Consensus 8 ~~~s~~v~~~~g~~v~LvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~~D~pGl~~~~~~~~~~~ 87 (356)
.++||++.+ |++++|+|+||||||||+++|+|...+ ..|.+.++|.++...+...........+++.
T Consensus 27 ~~~s~~i~~--Ge~~~i~G~nGsGKSTLl~~i~Gl~~p-----------~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~ 93 (228)
T PRK10584 27 TGVELVVKR--GETIALIGESGSGKSTLLAILAGLDDG-----------SSGEVSLVGQPLHQMDEEARAKLRAKHVGFV 93 (228)
T ss_pred eccEEEEcC--CCEEEEECCCCCCHHHHHHHHHcCCCC-----------CCeeEEECCEEcccCCHHHHHHHHhheEEEE
Confidence 578999999 889999999999999999999999866 7999999998875433211100011223333
Q ss_pred cccccccc---chhHHHHHHh--cCChHHHHHHHHHHHHHccC--ccccccCcccccceecccee---------eeecCC
Q 018394 88 RQVIAVSK---SSDIVLMVLD--ASKSEGHRQILTKELEAVGL--RLNKRPPQIYFKKKKTGGIS---------FNSTLP 151 (356)
Q Consensus 88 ~~~~~~~~---~~d~i~~v~d--~~~~~~~~~~i~~~L~~~~i--~l~~~~~~lS~g~~qr~~ia---------l~~DEp 151 (356)
.|....+. ..|.+.+... ........+.+.+.|+.+++ .+++.+..||+||+||++|+ +++|||
T Consensus 94 ~q~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Ge~qrl~la~al~~~p~llllDEP 173 (228)
T PRK10584 94 FQSFMLIPTLNALENVELPALLRGESSRQSRNGAKALLEQLGLGKRLDHLPAQLSGGEQQRVALARAFNGRPDVLFADEP 173 (228)
T ss_pred EcccccCCCcCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCC
Confidence 44333322 2444433221 11222334567888999999 67888999999999999998 999999
Q ss_pred CCCCCHHHHHH---HHHHhcc--cCcEEEEccCCCH
Q 018394 152 LTHVDEKLCYQ---ILHEYKI--HNAEVLFREDATV 182 (356)
Q Consensus 152 ~~~LD~~~~~~---il~~l~~--~~~~i~~thd~~~ 182 (356)
|++||+..... +++++.. +.+++++||+...
T Consensus 174 t~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~ 209 (228)
T PRK10584 174 TGNLDRQTGDKIADLLFSLNREHGTTLILVTHDLQL 209 (228)
T ss_pred CCCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHH
Confidence 99999987554 4555432 4589999999754
No 72
>PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed
Probab=99.87 E-value=8.5e-22 Score=191.81 Aligned_cols=172 Identities=18% Similarity=0.170 Sum_probs=127.9
Q ss_pred CCCCeEEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCccccccccccccceEEEECCEeecccCccccccccccCcccc
Q 018394 8 AGEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRG 87 (356)
Q Consensus 8 ~~~s~~v~~~~g~~v~LvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~~D~pGl~~~~~~~~~~~ 87 (356)
.+++|++.+ |++++|+|||||||||||++|+|...+ ..|.|.++|.++.-+ + .....+++.
T Consensus 31 ~~vsl~i~~--Ge~~~LlGpsGsGKSTLLr~IaGl~~p-----------~~G~I~~~g~~i~~~--~----~~~r~ig~v 91 (375)
T PRK09452 31 SNLDLTINN--GEFLTLLGPSGCGKTTVLRLIAGFETP-----------DSGRIMLDGQDITHV--P----AENRHVNTV 91 (375)
T ss_pred eeeEEEEeC--CCEEEEECCCCCcHHHHHHHHhCCCCC-----------CceEEEECCEECCCC--C----HHHCCEEEE
Confidence 478999999 889999999999999999999999876 899999999987532 2 122356666
Q ss_pred ccccccccc---hhHHHHHHhcC--ChHHHHHHHHHHHHHccC--ccccccCcccccceecccee---------eeecCC
Q 018394 88 RQVIAVSKS---SDIVLMVLDAS--KSEGHRQILTKELEAVGL--RLNKRPPQIYFKKKKTGGIS---------FNSTLP 151 (356)
Q Consensus 88 ~~~~~~~~~---~d~i~~v~d~~--~~~~~~~~i~~~L~~~~i--~l~~~~~~lS~g~~qr~~ia---------l~~DEp 151 (356)
+|....+.. .+++.+.+... ......+.+.+.++.++| .+++++.+||+||+||+++| +++|||
T Consensus 92 fQ~~~lfp~ltv~eNi~~~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~p~~LSgGq~QRVaLARaL~~~P~llLLDEP 171 (375)
T PRK09452 92 FQSYALFPHMTVFENVAFGLRMQKTPAAEITPRVMEALRMVQLEEFAQRKPHQLSGGQQQRVAIARAVVNKPKVLLLDES 171 (375)
T ss_pred ecCcccCCCCCHHHHHHHHHhhcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCC
Confidence 776655544 45555444322 222234567888999999 78999999999999999998 999999
Q ss_pred CCCCCHHHHHHHHHHh---cc--cCcEEEEccCCCHHHHHHHHhccccccceEEEeecCCC
Q 018394 152 LTHVDEKLCYQILHEY---KI--HNAEVLFREDATVDDLIDVIEGNRKYMKCVYVYNKIDV 207 (356)
Q Consensus 152 ~~~LD~~~~~~il~~l---~~--~~~~i~~thd~~~~~~~~~i~~~~~~~p~i~v~NK~Dl 207 (356)
|++||......+...+ .. +.++|++|||...... ....+++++..-+
T Consensus 172 ~s~LD~~~r~~l~~~L~~l~~~~g~tiI~vTHd~~ea~~---------laDri~vl~~G~i 223 (375)
T PRK09452 172 LSALDYKLRKQMQNELKALQRKLGITFVFVTHDQEEALT---------MSDRIVVMRDGRI 223 (375)
T ss_pred CCcCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHH---------hCCEEEEEECCEE
Confidence 9999998755544444 32 4589999999754321 1356777766544
No 73
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=99.87 E-value=1.2e-21 Score=180.15 Aligned_cols=175 Identities=20% Similarity=0.150 Sum_probs=119.9
Q ss_pred CCCCeEEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCccccccccccccceEEEECCEeecccCccccccccccCcccc
Q 018394 8 AGEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRG 87 (356)
Q Consensus 8 ~~~s~~v~~~~g~~v~LvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~~D~pGl~~~~~~~~~~~ 87 (356)
.++||++.+ |++++|+|+|||||||||++|+|...+ ..|.+.++|.++...+...+. .....+++.
T Consensus 19 ~~vs~~i~~--Ge~~~l~G~nGsGKSTLl~~l~Gl~~~-----------~~G~i~~~g~~~~~~~~~~~~-~~~~~i~~v 84 (243)
T TIGR02315 19 KNINLNINP--GEFVAIIGPSGAGKSTLLRCINRLVEP-----------SSGSILLEGTDITKLRGKKLR-KLRRRIGMI 84 (243)
T ss_pred ecceEEEcC--CCEEEEECCCCCCHHHHHHHHhCCcCC-----------CccEEEECCEEhhhCCHHHHH-HHHhheEEE
Confidence 689999999 889999999999999999999999866 789999999876533211110 011223444
Q ss_pred ccccccccc---hhHHHHHHhc----------CChHHHHHHHHHHHHHccC--ccccccCcccccceecccee-------
Q 018394 88 RQVIAVSKS---SDIVLMVLDA----------SKSEGHRQILTKELEAVGL--RLNKRPPQIYFKKKKTGGIS------- 145 (356)
Q Consensus 88 ~~~~~~~~~---~d~i~~v~d~----------~~~~~~~~~i~~~L~~~~i--~l~~~~~~lS~g~~qr~~ia------- 145 (356)
.|....+.. .+.+.+.... .......+.+.+.++.+++ .+++++..||+||+||++||
T Consensus 85 ~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p 164 (243)
T TIGR02315 85 FQHYNLIERLTVLENVLHGRLGYKPTWRSLLGRFSEEDKERALSALERVGLADKAYQRADQLSGGQQQRVAIARALAQQP 164 (243)
T ss_pred cCCCcccccccHHHHHhhcccccccchhhhhccccHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHHHHHHHHHHHhcCC
Confidence 443333322 3333221100 0112234567788999998 67888999999999999998
Q ss_pred --eeecCCCCCCCHHHHHH---HHHHhcc--cCcEEEEccCCCHHHHHHHHhccccccceEEEeecC
Q 018394 146 --FNSTLPLTHVDEKLCYQ---ILHEYKI--HNAEVLFREDATVDDLIDVIEGNRKYMKCVYVYNKI 205 (356)
Q Consensus 146 --l~~DEp~~~LD~~~~~~---il~~l~~--~~~~i~~thd~~~~~~~~~i~~~~~~~p~i~v~NK~ 205 (356)
+++||||++||+..... +|+.+.. +.+++++||+.+.... .+..+++++..
T Consensus 165 ~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~tH~~~~~~~---------~~d~v~~l~~G 222 (243)
T TIGR02315 165 DLILADEPIASLDPKTSKQVMDYLKRINKEDGITVIINLHQVDLAKK---------YADRIVGLKAG 222 (243)
T ss_pred CEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHH---------hcCeEEEEECC
Confidence 99999999999987544 4555432 4589999999765321 23556666654
No 74
>COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]
Probab=99.87 E-value=4.6e-22 Score=172.75 Aligned_cols=180 Identities=15% Similarity=0.120 Sum_probs=131.9
Q ss_pred CCCCeEEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCccccccccccccceEEEECCEeecccCccccccccccCcccc
Q 018394 8 AGEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRG 87 (356)
Q Consensus 8 ~~~s~~v~~~~g~~v~LvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~~D~pGl~~~~~~~~~~~ 87 (356)
.++||++++ |+++||+|+|||||||+|++|.++..| .+|.+.++|.+.+- |..+.++ .+|..
T Consensus 19 rdVSF~ae~--Gei~GlLG~NGAGKTT~LRmiatlL~P-----------~~G~v~idg~d~~~-~p~~vrr----~IGVl 80 (245)
T COG4555 19 RDVSFEAEE--GEITGLLGENGAGKTTLLRMIATLLIP-----------DSGKVTIDGVDTVR-DPSFVRR----KIGVL 80 (245)
T ss_pred hheeEEecc--ceEEEEEcCCCCCchhHHHHHHHhccC-----------CCceEEEeeccccc-ChHHHhh----hccee
Confidence 589999999 889999999999999999999999877 89999999987642 3333221 22222
Q ss_pred cc---ccccccchhHHHHHHhcC--ChHHHHHHHHHHHHHccC--ccccccCcccccceecccee---------eeecCC
Q 018394 88 RQ---VIAVSKSSDIVLMVLDAS--KSEGHRQILTKELEAVGL--RLNKRPPQIYFKKKKTGGIS---------FNSTLP 151 (356)
Q Consensus 88 ~~---~~~~~~~~d~i~~v~d~~--~~~~~~~~i~~~L~~~~i--~l~~~~~~lS~g~~qr~~ia---------l~~DEp 151 (356)
+. +..-+..-+++.++.... ...+-..++.++.+.+++ .++++...+|.|++|+++|| +++|||
T Consensus 81 ~~e~glY~RlT~rEnl~~Fa~L~~l~~~~~kari~~l~k~l~l~~~~~rRv~~~S~G~kqkV~iARAlvh~P~i~vlDEP 160 (245)
T COG4555 81 FGERGLYARLTARENLKYFARLNGLSRKEIKARIAELSKRLQLLEYLDRRVGEFSTGMKQKVAIARALVHDPSILVLDEP 160 (245)
T ss_pred cCCcChhhhhhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHhChHHHHHHHHhhhchhhHHHHHHHHHHhcCCCeEEEcCC
Confidence 21 111223345555553332 223345677888888998 79999999999999999998 999999
Q ss_pred CCCCCHHH---HHHHHHHhcc-cCcEEEEccCCCHHH-HHHHHhccccccceEEEeecCCCCChhhHHH
Q 018394 152 LTHVDEKL---CYQILHEYKI-HNAEVLFREDATVDD-LIDVIEGNRKYMKCVYVYNKIDVIGIDDVDK 215 (356)
Q Consensus 152 ~~~LD~~~---~~~il~~l~~-~~~~i~~thd~~~~~-~~~~i~~~~~~~p~i~v~NK~Dl~~~~~~~~ 215 (356)
|+|||... +.+++.+++. +.+++++||.+...+ + |+.++++.|..++-....+.
T Consensus 161 ~sGLDi~~~r~~~dfi~q~k~egr~viFSSH~m~Eveal----------CDrvivlh~Gevv~~gs~~~ 219 (245)
T COG4555 161 TSGLDIRTRRKFHDFIKQLKNEGRAVIFSSHIMQEVEAL----------CDRVIVLHKGEVVLEGSIEA 219 (245)
T ss_pred CCCccHHHHHHHHHHHHHhhcCCcEEEEecccHHHHHHh----------hheEEEEecCcEEEcCCHHH
Confidence 99999877 5566666665 569999999987654 4 46788888887654333333
No 75
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=99.87 E-value=1.2e-21 Score=173.74 Aligned_cols=160 Identities=19% Similarity=0.170 Sum_probs=112.8
Q ss_pred CCCCeEEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCccccccccccccceEEEECCEeecccCccccccccccCcccc
Q 018394 8 AGEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRG 87 (356)
Q Consensus 8 ~~~s~~v~~~~g~~v~LvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~~D~pGl~~~~~~~~~~~ 87 (356)
.++||++.+ |++++|+|+||||||||+++|+|...+ ..|.+.++|.++.. +..... .....+++.
T Consensus 9 ~~vsl~i~~--Ge~~~i~G~nGsGKSTLl~~i~G~~~~-----------~~G~i~~~g~~~~~-~~~~~~-~~~~~i~~~ 73 (190)
T TIGR01166 9 KGLNFAAER--GEVLALLGANGAGKSTLLLHLNGLLRP-----------QSGAVLIDGEPLDY-SRKGLL-ERRQRVGLV 73 (190)
T ss_pred cceeEEEcC--CCEEEEECCCCCCHHHHHHHHhCCCCC-----------CceeEEECCEEccc-cccchH-HHHhhEEEE
Confidence 689999999 889999999999999999999999866 79999999988742 111110 011223333
Q ss_pred cccc--cc--ccchhHHHHHHhcC--ChHHHHHHHHHHHHHccC--ccccccCcccccceecccee---------eeecC
Q 018394 88 RQVI--AV--SKSSDIVLMVLDAS--KSEGHRQILTKELEAVGL--RLNKRPPQIYFKKKKTGGIS---------FNSTL 150 (356)
Q Consensus 88 ~~~~--~~--~~~~d~i~~v~d~~--~~~~~~~~i~~~L~~~~i--~l~~~~~~lS~g~~qr~~ia---------l~~DE 150 (356)
.|.. .. ....+.+.+..... ......+.+.+.++.+++ .+++.+.+||+|++||+.++ +++||
T Consensus 74 ~q~~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDE 153 (190)
T TIGR01166 74 FQDPDDQLFAADVDQDVAFGPLNLGLSEAEVERRVREALTAVGASGLRERPTHCLSGGEKKRVAIAGAVAMRPDVLLLDE 153 (190)
T ss_pred ecChhhccccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCchhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcC
Confidence 3332 11 12244444322111 122233457788899998 67888999999999999988 99999
Q ss_pred CCCCCCHHHHHHHHH---Hhcc-cCcEEEEccCCCH
Q 018394 151 PLTHVDEKLCYQILH---EYKI-HNAEVLFREDATV 182 (356)
Q Consensus 151 p~~~LD~~~~~~il~---~l~~-~~~~i~~thd~~~ 182 (356)
||++||+.....+++ ++.. +.+++++||+.+.
T Consensus 154 Pt~~LD~~~~~~~~~~l~~~~~~~~tili~sH~~~~ 189 (190)
T TIGR01166 154 PTAGLDPAGREQMLAILRRLRAEGMTVVISTHDVDL 189 (190)
T ss_pred CcccCCHHHHHHHHHHHHHHHHcCCEEEEEeecccc
Confidence 999999988555444 4433 4589999999753
No 76
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=99.87 E-value=7.7e-22 Score=178.03 Aligned_cols=154 Identities=23% Similarity=0.234 Sum_probs=110.7
Q ss_pred CCCCeEEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCccccccccccccceEEEECCEeecccCccccccccccCcccc
Q 018394 8 AGEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRG 87 (356)
Q Consensus 8 ~~~s~~v~~~~g~~v~LvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~~D~pGl~~~~~~~~~~~ 87 (356)
.++||++.+ |++++|+|+||||||||+++|+|...| ..|.+.++|.++.. + ...+++.
T Consensus 16 ~~isl~i~~--Ge~~~l~G~nGsGKSTLl~~l~G~~~p-----------~~G~i~~~g~~~~~-----~----~~~i~~v 73 (213)
T cd03235 16 EDVSFEVKP--GEFLAIVGPNGAGKSTLLKAILGLLKP-----------TSGSIRVFGKPLEK-----E----RKRIGYV 73 (213)
T ss_pred ecceeEEcC--CCEEEEECCCCCCHHHHHHHHcCCCCC-----------CCCEEEECCccHHH-----H----HhheEEe
Confidence 689999999 889999999999999999999999866 78999999976531 0 1122333
Q ss_pred cccccc-----ccchhHHHHHHhcC------ChHHHHHHHHHHHHHccC--ccccccCcccccceecccee---------
Q 018394 88 RQVIAV-----SKSSDIVLMVLDAS------KSEGHRQILTKELEAVGL--RLNKRPPQIYFKKKKTGGIS--------- 145 (356)
Q Consensus 88 ~~~~~~-----~~~~d~i~~v~d~~------~~~~~~~~i~~~L~~~~i--~l~~~~~~lS~g~~qr~~ia--------- 145 (356)
.|.... ....+.+.+..... ......+.+.+.++.+++ .+++++.+||+||+||++++
T Consensus 74 ~q~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~l 153 (213)
T cd03235 74 PQRRSIDRDFPISVRDVVLMGLYGHKGLFRRLSKADKAKVDEALERVGLSELADRQIGELSGGQQQRVLLARALVQDPDL 153 (213)
T ss_pred ccccccccCCCCcHHHHHHhccccccccccCCCHHHHHHHHHHHHHcCCHHHHhCCcccCCHHHHHHHHHHHHHHcCCCE
Confidence 332211 12233333321110 112234567888999999 67889999999999999988
Q ss_pred eeecCCCCCCCHHHHHHH---HHHhc-ccCcEEEEccCCCHH
Q 018394 146 FNSTLPLTHVDEKLCYQI---LHEYK-IHNAEVLFREDATVD 183 (356)
Q Consensus 146 l~~DEp~~~LD~~~~~~i---l~~l~-~~~~~i~~thd~~~~ 183 (356)
+++||||++||+.....+ +.++. .+.++|++||+.+..
T Consensus 154 lllDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~~sH~~~~~ 195 (213)
T cd03235 154 LLLDEPFAGVDPKTQEDIYELLRELRREGMTILVVTHDLGLV 195 (213)
T ss_pred EEEeCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHH
Confidence 999999999999885544 44443 345899999997643
No 77
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.87 E-value=2e-21 Score=176.21 Aligned_cols=153 Identities=22% Similarity=0.203 Sum_probs=112.5
Q ss_pred CCCCeEEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCccccccccccccceEEEECCEeecccCccccccccccCcccc
Q 018394 8 AGEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRG 87 (356)
Q Consensus 8 ~~~s~~v~~~~g~~v~LvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~~D~pGl~~~~~~~~~~~ 87 (356)
.+++|++.+ |++++|+|+||||||||+++|+|...+ ..|.+.++|.++... ...+++.
T Consensus 21 ~~vs~~i~~--G~~~~i~G~nGsGKSTLl~~l~Gl~~~-----------~~G~i~~~g~~~~~~---------~~~i~~v 78 (220)
T cd03293 21 EDISLSVEE--GEFVALVGPSGCGKSTLLRIIAGLERP-----------TSGEVLVDGEPVTGP---------GPDRGYV 78 (220)
T ss_pred eceeEEEeC--CcEEEEECCCCCCHHHHHHHHhCCCCC-----------CceEEEECCEECccc---------cCcEEEE
Confidence 588999999 889999999999999999999999766 789999999876411 1122333
Q ss_pred ccccccc---cchhHHHHHHhcC--ChHHHHHHHHHHHHHccC--ccccccCcccccceecccee---------eeecCC
Q 018394 88 RQVIAVS---KSSDIVLMVLDAS--KSEGHRQILTKELEAVGL--RLNKRPPQIYFKKKKTGGIS---------FNSTLP 151 (356)
Q Consensus 88 ~~~~~~~---~~~d~i~~v~d~~--~~~~~~~~i~~~L~~~~i--~l~~~~~~lS~g~~qr~~ia---------l~~DEp 151 (356)
.|....+ ...+.+.+..... ......+.+.+.++.+++ .+++.+..||+||+||+.+| +++|||
T Consensus 79 ~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrl~la~al~~~p~lllLDEP 158 (220)
T cd03293 79 FQQDALLPWLTVLDNVALGLELQGVPKAEARERAEELLELVGLSGFENAYPHQLSGGMRQRVALARALAVDPDVLLLDEP 158 (220)
T ss_pred ecccccccCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEECCC
Confidence 3332222 2245554433221 122234567888999999 57888999999999999998 999999
Q ss_pred CCCCCHHHHHHH---HHHhc-c-cCcEEEEccCCCH
Q 018394 152 LTHVDEKLCYQI---LHEYK-I-HNAEVLFREDATV 182 (356)
Q Consensus 152 ~~~LD~~~~~~i---l~~l~-~-~~~~i~~thd~~~ 182 (356)
|++||+.....+ ++++. . +.+++++||+...
T Consensus 159 t~~LD~~~~~~~~~~l~~~~~~~~~tiii~sH~~~~ 194 (220)
T cd03293 159 FSALDALTREQLQEELLDIWRETGKTVLLVTHDIDE 194 (220)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHHH
Confidence 999999985554 44443 2 4589999999764
No 78
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.87 E-value=1.4e-21 Score=179.42 Aligned_cols=171 Identities=21% Similarity=0.204 Sum_probs=120.1
Q ss_pred CCCCeEEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCccccccccccccceEEEECCEeecccCccccccccccCcccc
Q 018394 8 AGEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRG 87 (356)
Q Consensus 8 ~~~s~~v~~~~g~~v~LvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~~D~pGl~~~~~~~~~~~ 87 (356)
.+++|++.+ |++++|+|+||||||||+++|+|...+ ..|.+.++|.++...+. ....+++.
T Consensus 19 ~~vs~~i~~--Ge~~~i~G~nGsGKSTLl~~l~Gl~~~-----------~~G~i~~~g~~~~~~~~------~~~~i~~v 79 (239)
T cd03296 19 DDVSLDIPS--GELVALLGPSGSGKTTLLRLIAGLERP-----------DSGTILFGGEDATDVPV------QERNVGFV 79 (239)
T ss_pred eeeeEEEcC--CCEEEEECCCCCCHHHHHHHHhCCCCC-----------CceEEEECCEECCcCCc------cccceEEE
Confidence 588999999 889999999999999999999999866 78999999987643221 11223444
Q ss_pred cccccccc---chhHHHHHHhcC------ChHHHHHHHHHHHHHccC--ccccccCcccccceecccee---------ee
Q 018394 88 RQVIAVSK---SSDIVLMVLDAS------KSEGHRQILTKELEAVGL--RLNKRPPQIYFKKKKTGGIS---------FN 147 (356)
Q Consensus 88 ~~~~~~~~---~~d~i~~v~d~~------~~~~~~~~i~~~L~~~~i--~l~~~~~~lS~g~~qr~~ia---------l~ 147 (356)
.|....+. ..+.+.+..... ......+.+.++++.+++ ..++.+..||+||+||++|+ ++
T Consensus 80 ~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~lll 159 (239)
T cd03296 80 FQHYALFRHMTVFDNVAFGLRVKPRSERPPEAEIRAKVHELLKLVQLDWLADRYPAQLSGGQRQRVALARALAVEPKVLL 159 (239)
T ss_pred ecCCcccCCCCHHHHHhhhhhhccccccCCHHHHHHHHHHHHHHcCChhhhhcChhhCCHHHHHHHHHHHHHhcCCCEEE
Confidence 44333332 244444332211 111223457788999999 57888999999999999988 99
Q ss_pred ecCCCCCCCHHHHHH---HHHHhcc--cCcEEEEccCCCHHHHHHHHhccccccceEEEeecCC
Q 018394 148 STLPLTHVDEKLCYQ---ILHEYKI--HNAEVLFREDATVDDLIDVIEGNRKYMKCVYVYNKID 206 (356)
Q Consensus 148 ~DEp~~~LD~~~~~~---il~~l~~--~~~~i~~thd~~~~~~~~~i~~~~~~~p~i~v~NK~D 206 (356)
+||||++||+..... ++.++.. +.++|++||+.+.... .+..+++++..-
T Consensus 160 lDEP~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~~~~~~~---------~~d~i~~l~~G~ 214 (239)
T cd03296 160 LDEPFGALDAKVRKELRRWLRRLHDELHVTTVFVTHDQEEALE---------VADRVVVMNKGR 214 (239)
T ss_pred EcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHH---------hCCEEEEEECCe
Confidence 999999999988554 4555543 4589999999753221 235666666543
No 79
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.87 E-value=1.5e-21 Score=179.28 Aligned_cols=176 Identities=20% Similarity=0.168 Sum_probs=121.3
Q ss_pred CCCCeEEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCccccccccccccceEEEECCEeecccCccccccccccCcccc
Q 018394 8 AGEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRG 87 (356)
Q Consensus 8 ~~~s~~v~~~~g~~v~LvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~~D~pGl~~~~~~~~~~~ 87 (356)
.++||++.+ |++++|+|+||||||||+++|+|...+ ..|.+.++|.++...+.... ......+++.
T Consensus 18 ~~vs~~i~~--Ge~~~i~G~nGsGKSTLl~~l~Gl~~~-----------~~G~i~~~g~~~~~~~~~~~-~~~~~~i~~~ 83 (241)
T cd03256 18 KDVSLSINP--GEFVALIGPSGAGKSTLLRCLNGLVEP-----------TSGSVLIDGTDINKLKGKAL-RQLRRQIGMI 83 (241)
T ss_pred ecceEEEcC--CCEEEEECCCCCCHHHHHHHHhCCcCC-----------CCceEEECCEeccccCHhHH-HHHHhccEEE
Confidence 689999999 889999999999999999999999866 78999999987754321000 0011233444
Q ss_pred ccccccccc---hhHHHHHHhc----------CChHHHHHHHHHHHHHccC--ccccccCcccccceecccee-------
Q 018394 88 RQVIAVSKS---SDIVLMVLDA----------SKSEGHRQILTKELEAVGL--RLNKRPPQIYFKKKKTGGIS------- 145 (356)
Q Consensus 88 ~~~~~~~~~---~d~i~~v~d~----------~~~~~~~~~i~~~L~~~~i--~l~~~~~~lS~g~~qr~~ia------- 145 (356)
.|....+.. .+.+.+.... .......+.+.+.++.+++ .+++.+.+||+||+||+++|
T Consensus 84 ~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p 163 (241)
T cd03256 84 FQQFNLIERLSVLENVLSGRLGRRSTWRSLFGLFPKEEKQRALAALERVGLLDKAYQRADQLSGGQQQRVAIARALMQQP 163 (241)
T ss_pred cccCcccccCcHHHHHHhhhcccchhhhhhcccCcHHHHHHHHHHHHHcCChhhhCCCcccCCHHHHHHHHHHHHHhcCC
Confidence 443333322 3443321110 0112234567788999999 67888999999999999998
Q ss_pred --eeecCCCCCCCHHHHHHH---HHHhcc--cCcEEEEccCCCHHHHHHHHhccccccceEEEeecCC
Q 018394 146 --FNSTLPLTHVDEKLCYQI---LHEYKI--HNAEVLFREDATVDDLIDVIEGNRKYMKCVYVYNKID 206 (356)
Q Consensus 146 --l~~DEp~~~LD~~~~~~i---l~~l~~--~~~~i~~thd~~~~~~~~~i~~~~~~~p~i~v~NK~D 206 (356)
+++||||++||+.....+ |+.+.. +.+++++||+.+.... .+..+++++...
T Consensus 164 ~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~~~~~~---------~~d~v~~l~~G~ 222 (241)
T cd03256 164 KLILADEPVASLDPASSRQVMDLLKRINREEGITVIVSLHQVDLARE---------YADRIVGLKDGR 222 (241)
T ss_pred CEEEEeCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHH---------hCCEEEEEECCE
Confidence 999999999999885544 444432 4589999999765432 235666666543
No 80
>COG4598 HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.87 E-value=2.2e-21 Score=165.75 Aligned_cols=178 Identities=18% Similarity=0.209 Sum_probs=130.5
Q ss_pred CCCCeEEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCccccccccccccceEEEECCEeeccc-Ccccccccc------
Q 018394 8 AGEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLL-DLPGIIEGA------ 80 (356)
Q Consensus 8 ~~~s~~v~~~~g~~v~LvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~~-D~pGl~~~~------ 80 (356)
+|+|+...+ |..|.|||-+||||||||+||.-+..| ..|.|.++|..+.+. |..|-...+
T Consensus 23 KGvSL~A~~--GdVisIIGsSGSGKSTfLRCiN~LE~P-----------~~G~I~v~geei~~k~~~~G~l~~ad~~q~~ 89 (256)
T COG4598 23 KGVSLQANA--GDVISIIGSSGSGKSTFLRCINFLEKP-----------SAGSIRVNGEEIRLKRDKDGQLKPADKRQLQ 89 (256)
T ss_pred cceeeecCC--CCEEEEecCCCCchhHHHHHHHhhcCC-----------CCceEEECCeEEEeeeCCCCCeeeCCHHHHH
Confidence 689999999 889999999999999999999988877 899999999988764 333322111
Q ss_pred --ccCccccccccccccchhHHHHHHhc------CChHHHHHHHHHHHHHccC--ccccccCcccccceecccee-----
Q 018394 81 --SEGKGRGRQVIAVSKSSDIVLMVLDA------SKSEGHRQILTKELEAVGL--RLNKRPPQIYFKKKKTGGIS----- 145 (356)
Q Consensus 81 --~~~~~~~~~~~~~~~~~d~i~~v~d~------~~~~~~~~~i~~~L~~~~i--~l~~~~~~lS~g~~qr~~ia----- 145 (356)
....++++|...+-....++..|+.+ ....+..++.+.+|.++|| +.+.+|..||+||+||++||
T Consensus 90 r~Rs~L~mVFQ~FNLWsHmtvLeNViEaPvhVLg~~k~ea~e~Ae~~L~kVGi~ek~~~YP~~LSGGQQQR~aIARaLam 169 (256)
T COG4598 90 RLRTRLGMVFQHFNLWSHMTVLENVIEAPVHVLGVSKAEAIERAEKYLAKVGIAEKADAYPAHLSGGQQQRVAIARALAM 169 (256)
T ss_pred HHHHHhhHhhhhcchhHHHHHHHHHHhcchHhhcCCHHHHHHHHHHHHHHhCchhhhhcCccccCchHHHHHHHHHHHhc
Confidence 11233444444333444444444433 1234566788999999999 77899999999999999998
Q ss_pred ----eeecCCCCCCCHHHHHHHHHH---hc-ccCcEEEEccCCCHHHHHHHHhccccccceEEEeecCCC
Q 018394 146 ----FNSTLPLTHVDEKLCYQILHE---YK-IHNAEVLFREDATVDDLIDVIEGNRKYMKCVYVYNKIDV 207 (356)
Q Consensus 146 ----l~~DEp~~~LD~~~~~~il~~---l~-~~~~~i~~thd~~~~~~~~~i~~~~~~~p~i~v~NK~Dl 207 (356)
+++||||+.|||+.+-++|+- +. .+.|.+++||.+.++.-.. ..++.+.+.-+
T Consensus 170 eP~vmLFDEPTSALDPElVgEVLkv~~~LAeEgrTMv~VTHEM~FAR~Vs---------s~v~fLh~G~i 230 (256)
T COG4598 170 EPEVMLFDEPTSALDPELVGEVLKVMQDLAEEGRTMVVVTHEMGFARDVS---------SHVIFLHQGKI 230 (256)
T ss_pred CCceEeecCCcccCCHHHHHHHHHHHHHHHHhCCeEEEEeeehhHHHhhh---------hheEEeeccee
Confidence 888999999999986665554 44 4669999999988765331 34556666543
No 81
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.87 E-value=2e-22 Score=170.25 Aligned_cols=158 Identities=17% Similarity=0.161 Sum_probs=127.3
Q ss_pred CCCCeEEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCccccccccccccceEEEECCEeecccCccccccccccCcccc
Q 018394 8 AGEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRG 87 (356)
Q Consensus 8 ~~~s~~v~~~~g~~v~LvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~~D~pGl~~~~~~~~~~~ 87 (356)
.++||.+.+ |+.++|.||+|||||||+++++.+.+| +.|.+.|.|.++.-.+.+.++. .+.+.
T Consensus 20 ~~isl~v~~--Ge~iaitGPSG~GKStllk~va~Lisp-----------~~G~l~f~Ge~vs~~~pea~Rq----~VsY~ 82 (223)
T COG4619 20 NNISLSVRA--GEFIAITGPSGCGKSTLLKIVASLISP-----------TSGTLLFEGEDVSTLKPEAYRQ----QVSYC 82 (223)
T ss_pred cceeeeecC--CceEEEeCCCCccHHHHHHHHHhccCC-----------CCceEEEcCccccccChHHHHH----HHHHH
Confidence 589999999 889999999999999999999999988 8999999999998888776543 23444
Q ss_pred ccccccccc--hhHHHHHHhcCChHHHHHHHHHHHHHccC---ccccccCcccccceecccee---------eeecCCCC
Q 018394 88 RQVIAVSKS--SDIVLMVLDASKSEGHRQILTKELEAVGL---RLNKRPPQIYFKKKKTGGIS---------FNSTLPLT 153 (356)
Q Consensus 88 ~~~~~~~~~--~d~i~~v~d~~~~~~~~~~i~~~L~~~~i---~l~~~~~~lS~g~~qr~~ia---------l~~DEp~~ 153 (356)
.|....+.. .|+++|-........+.......|+++++ .+.++...||||++||.++. +++||||+
T Consensus 83 ~Q~paLfg~tVeDNlifP~~~r~rr~dr~aa~~llar~~l~~~~L~k~it~lSGGE~QriAliR~Lq~~P~ILLLDE~Ts 162 (223)
T COG4619 83 AQTPALFGDTVEDNLIFPWQIRNRRPDRAAALDLLARFALPDSILTKNITELSGGEKQRIALIRNLQFMPKILLLDEITS 162 (223)
T ss_pred HcCccccccchhhccccchHHhccCCChHHHHHHHHHcCCchhhhcchhhhccchHHHHHHHHHHhhcCCceEEecCchh
Confidence 555555544 67777765544444466677889999998 78999999999999999887 89999999
Q ss_pred CCCHHH---HHHHHHHhc-c-cCcEEEEccCCCH
Q 018394 154 HVDEKL---CYQILHEYK-I-HNAEVLFREDATV 182 (356)
Q Consensus 154 ~LD~~~---~~~il~~l~-~-~~~~i~~thd~~~ 182 (356)
.||+.+ +.+++..+- . ..+++.+|||.+.
T Consensus 163 ALD~~nkr~ie~mi~~~v~~q~vAv~WiTHd~dq 196 (223)
T COG4619 163 ALDESNKRNIEEMIHRYVREQNVAVLWITHDKDQ 196 (223)
T ss_pred hcChhhHHHHHHHHHHHhhhhceEEEEEecChHH
Confidence 999986 556665554 3 3499999999754
No 82
>TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein. This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter.
Probab=99.87 E-value=1.6e-21 Score=189.16 Aligned_cols=176 Identities=19% Similarity=0.202 Sum_probs=122.8
Q ss_pred CCCeEEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCccccccccccccceEEEECCEeecccCcccc-ccccccCcccc
Q 018394 9 GEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGI-IEGASEGKGRG 87 (356)
Q Consensus 9 ~~s~~v~~~~g~~v~LvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~~D~pGl-~~~~~~~~~~~ 87 (356)
+++|++.+ |++++|+|+|||||||||++|+|...| ..|.+.++|.++.... ++. .......+++.
T Consensus 15 ~isl~i~~--Gei~~l~G~nGsGKSTLl~~iaGl~~p-----------~~G~I~~~g~~i~~~~-~~~~~~~~~~~i~~v 80 (354)
T TIGR02142 15 DADFTLPG--QGVTAIFGRSGSGKTTLIRLIAGLTRP-----------DEGEIVLNGRTLFDSR-KGIFLPPEKRRIGYV 80 (354)
T ss_pred EEEEEECC--CCEEEEECCCCCCHHHHHHHHhCCCCC-----------CceEEEECCEECccCc-cccccchhhCCeEEE
Confidence 68888888 889999999999999999999999876 7999999998764211 100 00112234555
Q ss_pred ccccccccc---hhHHHHHHhcCChHHHHHHHHHHHHHccC--ccccccCcccccceecccee---------eeecCCCC
Q 018394 88 RQVIAVSKS---SDIVLMVLDASKSEGHRQILTKELEAVGL--RLNKRPPQIYFKKKKTGGIS---------FNSTLPLT 153 (356)
Q Consensus 88 ~~~~~~~~~---~d~i~~v~d~~~~~~~~~~i~~~L~~~~i--~l~~~~~~lS~g~~qr~~ia---------l~~DEp~~ 153 (356)
.|....+.. .+++.+...........+.+.++|+.+++ .+++++.+||+||+||+++| +++||||+
T Consensus 81 ~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGqkqRvalAraL~~~p~lllLDEPts 160 (354)
T TIGR02142 81 FQEARLFPHLSVRGNLRYGMKRARPSERRISFERVIELLGIGHLLGRLPGRLSGGEKQRVAIGRALLSSPRLLLMDEPLA 160 (354)
T ss_pred ecCCccCCCCcHHHHHHHHhhccChhHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEcCCCc
Confidence 554444333 34444433222222234467888999999 68899999999999999998 99999999
Q ss_pred CCCHHHHHHH---HHHhcc--cCcEEEEccCCCHHHHHHHHhccccccceEEEeecCCC
Q 018394 154 HVDEKLCYQI---LHEYKI--HNAEVLFREDATVDDLIDVIEGNRKYMKCVYVYNKIDV 207 (356)
Q Consensus 154 ~LD~~~~~~i---l~~l~~--~~~~i~~thd~~~~~~~~~i~~~~~~~p~i~v~NK~Dl 207 (356)
+||+.....+ |+++.. +.+++++||+.+.... ....+++++..-+
T Consensus 161 ~LD~~~~~~l~~~L~~l~~~~g~tiiivtH~~~~~~~---------~~d~i~~l~~G~i 210 (354)
T TIGR02142 161 ALDDPRKYEILPYLERLHAEFGIPILYVSHSLQEVLR---------LADRVVVLEDGRV 210 (354)
T ss_pred CCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHH---------hCCEEEEEeCCEE
Confidence 9999885554 444433 4589999999764321 1355666665543
No 83
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=99.87 E-value=2e-21 Score=175.23 Aligned_cols=156 Identities=17% Similarity=0.214 Sum_probs=113.0
Q ss_pred CCCCeEEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCccccccccccccceEEEECCEeecccCccccccccccCcccc
Q 018394 8 AGEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRG 87 (356)
Q Consensus 8 ~~~s~~v~~~~g~~v~LvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~~D~pGl~~~~~~~~~~~ 87 (356)
.++||++.+ |++++|+|+||||||||+++|+|...+ ..|.+.++|.++...+.. ...+++.
T Consensus 17 ~~is~~i~~--Ge~~~l~G~nGsGKSTLl~~l~G~~~~-----------~~G~v~~~g~~~~~~~~~------~~~i~~~ 77 (213)
T cd03301 17 DDLNLDIAD--GEFVVLLGPSGCGKTTTLRMIAGLEEP-----------TSGRIYIGGRDVTDLPPK------DRDIAMV 77 (213)
T ss_pred eceEEEEcC--CcEEEEECCCCCCHHHHHHHHhCCCCC-----------CceEEEECCEECCcCCcc------cceEEEE
Confidence 689999999 889999999999999999999999866 799999999876432211 1123333
Q ss_pred cccccccc---chhHHHHHHhc--CChHHHHHHHHHHHHHccC--ccccccCcccccceecccee---------eeecCC
Q 018394 88 RQVIAVSK---SSDIVLMVLDA--SKSEGHRQILTKELEAVGL--RLNKRPPQIYFKKKKTGGIS---------FNSTLP 151 (356)
Q Consensus 88 ~~~~~~~~---~~d~i~~v~d~--~~~~~~~~~i~~~L~~~~i--~l~~~~~~lS~g~~qr~~ia---------l~~DEp 151 (356)
.|....+. ..+.+.+.... .......+.+.+.++.+++ .+++.+..||+||+||+.++ +++|||
T Consensus 78 ~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qr~~laral~~~p~llllDEP 157 (213)
T cd03301 78 FQNYALYPHMTVYDNIAFGLKLRKVPKDEIDERVREVAELLQIEHLLDRKPKQLSGGQRQRVALGRAIVREPKVFLMDEP 157 (213)
T ss_pred ecChhhccCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHHHHhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCC
Confidence 33332222 23444332211 1222334567788999998 67889999999999999988 999999
Q ss_pred CCCCCHHHHHHHH---HHhcc--cCcEEEEccCCCH
Q 018394 152 LTHVDEKLCYQIL---HEYKI--HNAEVLFREDATV 182 (356)
Q Consensus 152 ~~~LD~~~~~~il---~~l~~--~~~~i~~thd~~~ 182 (356)
|++||+.....++ +++.. +.+++++||+...
T Consensus 158 t~~LD~~~~~~l~~~l~~~~~~~~~tvi~~sH~~~~ 193 (213)
T cd03301 158 LSNLDAKLRVQMRAELKRLQQRLGTTTIYVTHDQVE 193 (213)
T ss_pred cccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHH
Confidence 9999999855544 44432 4599999999754
No 84
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=99.87 E-value=1.7e-21 Score=175.78 Aligned_cols=162 Identities=20% Similarity=0.224 Sum_probs=114.8
Q ss_pred CCCCeEEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCccccccccccccceEEEECCEeecccCccccccccccCcccc
Q 018394 8 AGEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRG 87 (356)
Q Consensus 8 ~~~s~~v~~~~g~~v~LvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~~D~pGl~~~~~~~~~~~ 87 (356)
.++||++.+ |++++|+|+||||||||+++|+|...+ ..|.+.++|.++...+.... ......+++.
T Consensus 18 ~~~sl~i~~--G~~~~i~G~nGsGKSTLl~~l~G~~~~-----------~~G~i~~~g~~i~~~~~~~~-~~~~~~i~~v 83 (214)
T cd03292 18 DGINISISA--GEFVFLVGPSGAGKSTLLKLIYKEELP-----------TSGTIRVNGQDVSDLRGRAI-PYLRRKIGVV 83 (214)
T ss_pred eeeEEEEcC--CCEEEEECCCCCCHHHHHHHHhcCCCC-----------CceEEEECCEEcccCCHHHH-HHHHHheEEE
Confidence 588999999 889999999999999999999999766 79999999987753321110 0111233444
Q ss_pred cccccccc---chhHHHHHHhcC--ChHHHHHHHHHHHHHccC--ccccccCcccccceecccee---------eeecCC
Q 018394 88 RQVIAVSK---SSDIVLMVLDAS--KSEGHRQILTKELEAVGL--RLNKRPPQIYFKKKKTGGIS---------FNSTLP 151 (356)
Q Consensus 88 ~~~~~~~~---~~d~i~~v~d~~--~~~~~~~~i~~~L~~~~i--~l~~~~~~lS~g~~qr~~ia---------l~~DEp 151 (356)
.|....+. ..+.+.+..... ......+.+.+.++.+++ .+++.+..||+||+||++++ +++|||
T Consensus 84 ~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEP 163 (214)
T cd03292 84 FQDFRLLPDRNVYENVAFALEVTGVPPREIRKRVPAALELVGLSHKHRALPAELSGGEQQRVAIARAIVNSPTILIADEP 163 (214)
T ss_pred ecCchhccCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHhhCChhhcCHHHHHHHHHHHHHHcCCCEEEEeCC
Confidence 44333333 244444332221 122234567788999998 67888999999999999988 999999
Q ss_pred CCCCCHHHHHHH---HHHhc-ccCcEEEEccCCCHH
Q 018394 152 LTHVDEKLCYQI---LHEYK-IHNAEVLFREDATVD 183 (356)
Q Consensus 152 ~~~LD~~~~~~i---l~~l~-~~~~~i~~thd~~~~ 183 (356)
|++||+.....+ ++++. .+.+++++||+....
T Consensus 164 t~~LD~~~~~~~~~~l~~~~~~~~tiiivtH~~~~~ 199 (214)
T cd03292 164 TGNLDPDTTWEIMNLLKKINKAGTTVVVATHAKELV 199 (214)
T ss_pred CCcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHH
Confidence 999999885554 44443 345899999997543
No 85
>cd01900 YchF YchF subfamily. YchF is a member of the Obg family, which includes four other subfamilies of GTPases: Obg, DRG, Ygr210, and NOG1. Obg is an essential gene that is involved in DNA replication in C. crescentus and Streptomyces griseus and is associated with the ribosome. Several members of the family, including YchF, possess the TGS domain related to the RNA-binding proteins. Experimental data and genomic analysis suggest that YchF may be part of a nucleoprotein complex and may function as a GTP-dependent translational factor.
Probab=99.86 E-value=3.6e-23 Score=192.50 Aligned_cols=203 Identities=25% Similarity=0.374 Sum_probs=136.9
Q ss_pred EEEEcCCCCcHHHHHHHHHcCCCCccccccccccccceEEEECCE-----------------eecccCccccccccccCc
Q 018394 22 VALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDT-----------------KIQLLDLPGIIEGASEGK 84 (356)
Q Consensus 22 v~LvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~-----------------~i~~~D~pGl~~~~~~~~ 84 (356)
+||||.||||||||||+||+....+++|||||++|+.|.+.+.+. +++++|+||++++++.+.
T Consensus 1 igivG~PN~GKSTLfn~Lt~~~~~~~n~pftTi~p~~g~v~v~d~r~~~l~~~~~~~k~~~~~i~lvD~pGl~~~a~~~~ 80 (274)
T cd01900 1 IGIVGLPNVGKSTLFNALTKAGAEAANYPFCTIEPNVGIVPVPDERLDKLAEIVKPKKIVPATIEFVDIAGLVKGASKGE 80 (274)
T ss_pred CeEeCCCCCcHHHHHHHHhCCCCccccccccchhceeeeEEeccchhhhHHHHhCCceeeeeEEEEEECCCcCCCCchhh
Confidence 589999999999999999999999999999999999999998774 489999999999888888
Q ss_pred cccccccccccchhHHHHHHhcC------------ChHHHHHHHHHHHHHccC-ccccccCcccccceeccceeeeecCC
Q 018394 85 GRGRQVIAVSKSSDIVLMVLDAS------------KSEGHRQILTKELEAVGL-RLNKRPPQIYFKKKKTGGISFNSTLP 151 (356)
Q Consensus 85 ~~~~~~~~~~~~~d~i~~v~d~~------------~~~~~~~~i~~~L~~~~i-~l~~~~~~lS~g~~qr~~ial~~DEp 151 (356)
+++++++..++++|++++|+|++ ++..+.+.+..+|..+++ .+.+++..+....+.. . ++
T Consensus 81 glg~~fL~~i~~~D~li~VV~~f~d~~~~~~~~~~dp~~d~~~i~~El~~~d~~~~ek~~~~l~k~~~~~-~-----~~- 153 (274)
T cd01900 81 GLGNKFLSHIREVDAIAHVVRCFEDDDITHVEGSVDPVRDIEIINTELILADLETVEKRLERLEKKAKSG-D-----KE- 153 (274)
T ss_pred HHHHHHHHHHHhCCEEEEEEeCcCCCCccCCCCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcc-c-----HH-
Confidence 88899999999999999999875 355677788888888777 5555555444221100 0 00
Q ss_pred CCCCCH-HHHHHHHHHhcccCcEEEEccCCCHHHHHHHHhc--cccccceEEEeecCC--CCC-hhhHHHHhc-----CC
Q 018394 152 LTHVDE-KLCYQILHEYKIHNAEVLFREDATVDDLIDVIEG--NRKYMKCVYVYNKID--VIG-IDDVDKLAR-----QP 220 (356)
Q Consensus 152 ~~~LD~-~~~~~il~~l~~~~~~i~~thd~~~~~~~~~i~~--~~~~~p~i~v~NK~D--l~~-~~~~~~l~~-----~~ 220 (356)
...+ ..+..+.+.+..+.. +..-+|+.++.. .+.+ ....||+++++|+.| +.. .+....+.. ..
T Consensus 154 --~~~e~~~l~~~~~~L~~~~~--~~~~~~~~~e~~-~l~~~~llt~KP~i~v~N~~e~d~~~~~~~~~~~~~~~~~~~~ 228 (274)
T cd01900 154 --AKAELELLEKIKEHLEEGKP--ARSLELTEEEIE-ILNSLQLLTAKPVLYVANVSEDDLANGNNKVLKVREIAAKEGA 228 (274)
T ss_pred --HHHHHHHHHHHHHHHHcCCC--cCcCCCCHHHHH-HHHHHhHhhcCCceeecccCHHHhccccHHHHHHHHHHhcCCC
Confidence 0000 011222222222111 112356655532 2221 344589999999997 432 122222221 23
Q ss_pred CEEEeccccccchHHH
Q 018394 221 NSVVISCNLKLNLDRL 236 (356)
Q Consensus 221 ~~i~iSa~~~~~l~~L 236 (356)
.++++||+.+..+.+|
T Consensus 229 ~~i~~sa~~E~eL~~l 244 (274)
T cd01900 229 EVIPISAKIEAELAEL 244 (274)
T ss_pred eEEEeeHHHHHHHHcC
Confidence 4899999988776544
No 86
>PRK10908 cell division protein FtsE; Provisional
Probab=99.86 E-value=2e-21 Score=176.53 Aligned_cols=162 Identities=22% Similarity=0.243 Sum_probs=114.3
Q ss_pred CCCCeEEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCccccccccccccceEEEECCEeecccCccccccccccCcccc
Q 018394 8 AGEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRG 87 (356)
Q Consensus 8 ~~~s~~v~~~~g~~v~LvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~~D~pGl~~~~~~~~~~~ 87 (356)
.++||++.+ |++++|+|+|||||||||++|+|...+ .+|.+.++|.++...+..... ......++.
T Consensus 19 ~~vsl~i~~--Ge~~~i~G~nGsGKSTLl~~l~G~~~~-----------~~G~i~~~g~~i~~~~~~~~~-~~~~~i~~~ 84 (222)
T PRK10908 19 QGVTFHMRP--GEMAFLTGHSGAGKSTLLKLICGIERP-----------SAGKIWFSGHDITRLKNREVP-FLRRQIGMI 84 (222)
T ss_pred eeeeEEEcC--CCEEEEECCCCCCHHHHHHHHhCCCCC-----------CceEEEECCEEcccCChhHHH-HHHhheEEE
Confidence 588999999 889999999999999999999999866 799999999877533211110 011223344
Q ss_pred cccccccc---chhHHHHHHhc--CChHHHHHHHHHHHHHccC--ccccccCcccccceecccee---------eeecCC
Q 018394 88 RQVIAVSK---SSDIVLMVLDA--SKSEGHRQILTKELEAVGL--RLNKRPPQIYFKKKKTGGIS---------FNSTLP 151 (356)
Q Consensus 88 ~~~~~~~~---~~d~i~~v~d~--~~~~~~~~~i~~~L~~~~i--~l~~~~~~lS~g~~qr~~ia---------l~~DEp 151 (356)
.|....+. ..+.+.+.... .......+.+.+.|+.+++ .+++.+..||+||+||++++ +++|||
T Consensus 85 ~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEP 164 (222)
T PRK10908 85 FQDHHLLMDRTVYDNVAIPLIIAGASGDDIRRRVSAALDKVGLLDKAKNFPIQLSGGEQQRVGIARAVVNKPAVLLADEP 164 (222)
T ss_pred ecCccccccccHHHHHHhHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCCchhCCHHHHHHHHHHHHHHcCCCEEEEeCC
Confidence 44333222 23444332211 1222233456788999998 67888999999999999988 999999
Q ss_pred CCCCCHHHHHH---HHHHhcc-cCcEEEEccCCCHH
Q 018394 152 LTHVDEKLCYQ---ILHEYKI-HNAEVLFREDATVD 183 (356)
Q Consensus 152 ~~~LD~~~~~~---il~~l~~-~~~~i~~thd~~~~ 183 (356)
|++||+..... ++..+.. +.+++++||+.+..
T Consensus 165 t~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~ 200 (222)
T PRK10908 165 TGNLDDALSEGILRLFEEFNRVGVTVLMATHDIGLI 200 (222)
T ss_pred CCcCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHH
Confidence 99999987544 4445433 45899999997643
No 87
>PRK11607 potG putrescine transporter ATP-binding subunit; Provisional
Probab=99.86 E-value=1.7e-21 Score=189.90 Aligned_cols=173 Identities=17% Similarity=0.181 Sum_probs=128.4
Q ss_pred CCCCeEEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCccccccccccccceEEEECCEeecccCccccccccccCcccc
Q 018394 8 AGEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRG 87 (356)
Q Consensus 8 ~~~s~~v~~~~g~~v~LvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~~D~pGl~~~~~~~~~~~ 87 (356)
.+++|++.+ |++++|+|||||||||||++|+|...+ ..|.|.++|.++.. .+. ....+++.
T Consensus 36 ~~vsl~i~~--Ge~~~llGpsGsGKSTLLr~IaGl~~p-----------~~G~I~i~g~~i~~--~~~----~~r~ig~v 96 (377)
T PRK11607 36 DDVSLTIYK--GEIFALLGASGCGKSTLLRMLAGFEQP-----------TAGQIMLDGVDLSH--VPP----YQRPINMM 96 (377)
T ss_pred eeeEEEEcC--CCEEEEECCCCCcHHHHHHHHhCCCCC-----------CceEEEECCEECCC--CCH----HHCCEEEE
Confidence 478999999 789999999999999999999999876 89999999988753 221 23356677
Q ss_pred ccccccccc---hhHHHHHHhcC--ChHHHHHHHHHHHHHccC--ccccccCcccccceecccee---------eeecCC
Q 018394 88 RQVIAVSKS---SDIVLMVLDAS--KSEGHRQILTKELEAVGL--RLNKRPPQIYFKKKKTGGIS---------FNSTLP 151 (356)
Q Consensus 88 ~~~~~~~~~---~d~i~~v~d~~--~~~~~~~~i~~~L~~~~i--~l~~~~~~lS~g~~qr~~ia---------l~~DEp 151 (356)
+|....+.. .+++.+.+... ...+..+.+.+.++.+++ .+++++..||+||+||++|+ +++|||
T Consensus 97 fQ~~~lfp~ltv~eNi~~~l~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~~~LSgGq~QRVaLARAL~~~P~lLLLDEP 176 (377)
T PRK11607 97 FQSYALFPHMTVEQNIAFGLKQDKLPKAEIASRVNEMLGLVHMQEFAKRKPHQLSGGQRQRVALARSLAKRPKLLLLDEP 176 (377)
T ss_pred eCCCccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCC
Confidence 776666654 45555444322 222334567889999999 78999999999999999998 999999
Q ss_pred CCCCCHHHHHHHHH---Hhc--ccCcEEEEccCCCHHHHHHHHhccccccceEEEeecCCCC
Q 018394 152 LTHVDEKLCYQILH---EYK--IHNAEVLFREDATVDDLIDVIEGNRKYMKCVYVYNKIDVI 208 (356)
Q Consensus 152 ~~~LD~~~~~~il~---~l~--~~~~~i~~thd~~~~~~~~~i~~~~~~~p~i~v~NK~Dl~ 208 (356)
|++||......+.. .+. .+.++|++|||...... ....+++++..-+.
T Consensus 177 ~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~ea~~---------laDri~vl~~G~i~ 229 (377)
T PRK11607 177 MGALDKKLRDRMQLEVVDILERVGVTCVMVTHDQEEAMT---------MAGRIAIMNRGKFV 229 (377)
T ss_pred cccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHH---------hCCEEEEEeCCEEE
Confidence 99999987554443 332 24599999999764321 13567777765443
No 88
>TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans.
Probab=99.86 E-value=1.7e-21 Score=185.21 Aligned_cols=174 Identities=17% Similarity=0.095 Sum_probs=122.7
Q ss_pred CCCCeEEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCccccccccccccceEEEECCEeecccCccccccccccCcccc
Q 018394 8 AGEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRG 87 (356)
Q Consensus 8 ~~~s~~v~~~~g~~v~LvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~~D~pGl~~~~~~~~~~~ 87 (356)
+++||++.+ |++++|+|+|||||||||++|+|...| ..|.+.++|.++... + ......+++.
T Consensus 21 ~~vsl~i~~--Ge~~~l~G~NGaGKSTLl~~l~Gl~~p-----------~~G~i~~~g~~~~~~--~---~~~~~~i~~v 82 (303)
T TIGR01288 21 NDLSFTIAR--GECFGLLGPNGAGKSTIARMLLGMISP-----------DRGKITVLGEPVPSR--A---RLARVAIGVV 82 (303)
T ss_pred cceeEEEcC--CcEEEEECCCCCCHHHHHHHHhCCCCC-----------CceEEEECCEECccc--H---HHHhhcEEEE
Confidence 689999999 889999999999999999999999876 799999999876421 1 1112234444
Q ss_pred ccccccc---cchhHHHHHHhc--CChHHHHHHHHHHHHHccC--ccccccCcccccceecccee---------eeecCC
Q 018394 88 RQVIAVS---KSSDIVLMVLDA--SKSEGHRQILTKELEAVGL--RLNKRPPQIYFKKKKTGGIS---------FNSTLP 151 (356)
Q Consensus 88 ~~~~~~~---~~~d~i~~v~d~--~~~~~~~~~i~~~L~~~~i--~l~~~~~~lS~g~~qr~~ia---------l~~DEp 151 (356)
.|....+ ...+.+.+.... .......+.+.++++.+++ .+++++..||+||+||++|| +++|||
T Consensus 83 ~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEP 162 (303)
T TIGR01288 83 PQFDNLDPEFTVRENLLVFGRYFGMSTREIEAVIPSLLEFARLESKADVRVALLSGGMKRRLTLARALINDPQLLILDEP 162 (303)
T ss_pred eccccCCcCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCChhHhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEeCC
Confidence 4443333 224444432221 1122223456778888998 67889999999999999988 999999
Q ss_pred CCCCCHHHHHHH---HHHhcc-cCcEEEEccCCCHHHHHHHHhccccccceEEEeecCCCC
Q 018394 152 LTHVDEKLCYQI---LHEYKI-HNAEVLFREDATVDDLIDVIEGNRKYMKCVYVYNKIDVI 208 (356)
Q Consensus 152 ~~~LD~~~~~~i---l~~l~~-~~~~i~~thd~~~~~~~~~i~~~~~~~p~i~v~NK~Dl~ 208 (356)
|++||+.....+ ++++.. +.+++++||+....+. .+..++++++.-+.
T Consensus 163 t~gLD~~~~~~l~~~l~~~~~~g~til~~sH~~~~~~~---------~~d~i~~l~~G~i~ 214 (303)
T TIGR01288 163 TTGLDPHARHLIWERLRSLLARGKTILLTTHFMEEAER---------LCDRLCVLESGRKI 214 (303)
T ss_pred CcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHH---------hCCEEEEEECCEEE
Confidence 999999885544 444433 4599999999764322 23567777765443
No 89
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.86 E-value=1.8e-21 Score=176.61 Aligned_cols=158 Identities=15% Similarity=0.118 Sum_probs=113.2
Q ss_pred CCCCeEEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCccccccccccccceEEEECCEeecccCccccccccccCcccc
Q 018394 8 AGEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRG 87 (356)
Q Consensus 8 ~~~s~~v~~~~g~~v~LvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~~D~pGl~~~~~~~~~~~ 87 (356)
++++|++.+ |++++|+|+||||||||+++|+|...| .+|.+.++|.++.. .... .....++.
T Consensus 17 ~~vs~~i~~--Ge~~~i~G~nGsGKSTLl~~i~G~~~~-----------~~G~i~~~g~~~~~-~~~~----~~~~i~~~ 78 (220)
T cd03265 17 RGVSFRVRR--GEIFGLLGPNGAGKTTTIKMLTTLLKP-----------TSGRATVAGHDVVR-EPRE----VRRRIGIV 78 (220)
T ss_pred eceeEEECC--CCEEEEECCCCCCHHHHHHHHhCCCCC-----------CceEEEECCEecCc-ChHH----HhhcEEEe
Confidence 589999999 889999999999999999999999766 78999999987642 1111 11223333
Q ss_pred cccccccc---chhHHHHHHhcCC--hHHHHHHHHHHHHHccC--ccccccCcccccceecccee---------eeecCC
Q 018394 88 RQVIAVSK---SSDIVLMVLDASK--SEGHRQILTKELEAVGL--RLNKRPPQIYFKKKKTGGIS---------FNSTLP 151 (356)
Q Consensus 88 ~~~~~~~~---~~d~i~~v~d~~~--~~~~~~~i~~~L~~~~i--~l~~~~~~lS~g~~qr~~ia---------l~~DEp 151 (356)
.|....+. ..+.+.+...... .....+.+.+.|+.+++ ..++++..||+||+||+.++ +++|||
T Consensus 79 ~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qr~~la~al~~~p~llllDEP 158 (220)
T cd03265 79 FQDLSVDDELTGWENLYIHARLYGVPGAERRERIDELLDFVGLLEAADRLVKTYSGGMRRRLEIARSLVHRPEVLFLDEP 158 (220)
T ss_pred cCCccccccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCC
Confidence 33332222 2344433322221 22234567888999999 67888999999999999988 899999
Q ss_pred CCCCCHHHHHHHH---HHhcc--cCcEEEEccCCCHH
Q 018394 152 LTHVDEKLCYQIL---HEYKI--HNAEVLFREDATVD 183 (356)
Q Consensus 152 ~~~LD~~~~~~il---~~l~~--~~~~i~~thd~~~~ 183 (356)
|++||+.....++ .++.. +.+++++||+....
T Consensus 159 t~~LD~~~~~~l~~~l~~~~~~~~~tvi~~tH~~~~~ 195 (220)
T cd03265 159 TIGLDPQTRAHVWEYIEKLKEEFGMTILLTTHYMEEA 195 (220)
T ss_pred ccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHH
Confidence 9999998855544 44432 45899999997643
No 90
>PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional
Probab=99.86 E-value=1.5e-21 Score=187.39 Aligned_cols=178 Identities=15% Similarity=0.146 Sum_probs=125.9
Q ss_pred CCCCeEEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCccccccccccccceEEEECCEeecccCccccccccccCcccc
Q 018394 8 AGEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRG 87 (356)
Q Consensus 8 ~~~s~~v~~~~g~~v~LvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~~D~pGl~~~~~~~~~~~ 87 (356)
.++||+|.+ |++++|+|+||||||||+++|+|...+ ..|.|.++|.++.-++...+.. ....+++.
T Consensus 38 ~~vsl~i~~--Ge~~~lvG~sGsGKSTLlk~i~Gl~~p-----------~~G~I~~~G~~i~~~~~~~~~~-~r~~i~~v 103 (331)
T PRK15079 38 DGVTLRLYE--GETLGVVGESGCGKSTFARAIIGLVKA-----------TDGEVAWLGKDLLGMKDDEWRA-VRSDIQMI 103 (331)
T ss_pred eeEEEEEcC--CCEEEEECCCCCCHHHHHHHHHCCCCC-----------CCcEEEECCEECCcCCHHHHHH-HhCceEEE
Confidence 588999999 889999999999999999999999876 7899999999875443221111 11235555
Q ss_pred cccc--ccc---cchhHHHHHHhc----CChHHHHHHHHHHHHHccC---ccccccCcccccceecccee---------e
Q 018394 88 RQVI--AVS---KSSDIVLMVLDA----SKSEGHRQILTKELEAVGL---RLNKRPPQIYFKKKKTGGIS---------F 146 (356)
Q Consensus 88 ~~~~--~~~---~~~d~i~~v~d~----~~~~~~~~~i~~~L~~~~i---~l~~~~~~lS~g~~qr~~ia---------l 146 (356)
.|.. ..+ ...+.+.+.+.. ....+..+.+.+.|+.+++ .+++++.+||+||+||++|| +
T Consensus 104 ~Q~~~~~l~p~~tv~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~vgl~~~~~~~~p~~LSgG~~QRv~iArAL~~~P~ll 183 (331)
T PRK15079 104 FQDPLASLNPRMTIGEIIAEPLRTYHPKLSRQEVKDRVKAMMLKVGLLPNLINRYPHEFSGGQCQRIGIARALILEPKLI 183 (331)
T ss_pred ecCchhhcCCCCCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCChHHhcCCcccCCHHHHHHHHHHHHHhcCCCEE
Confidence 5543 122 234444433322 1223334567888999998 46899999999999999998 9
Q ss_pred eecCCCCCCCHHHHHHHHH---Hhcc--cCcEEEEccCCCHHHHHHHHhccccccceEEEeecCCCC
Q 018394 147 NSTLPLTHVDEKLCYQILH---EYKI--HNAEVLFREDATVDDLIDVIEGNRKYMKCVYVYNKIDVI 208 (356)
Q Consensus 147 ~~DEp~~~LD~~~~~~il~---~l~~--~~~~i~~thd~~~~~~~~~i~~~~~~~p~i~v~NK~Dl~ 208 (356)
++||||++||.....++++ .+.. +.+++++|||......+ +..+++++...+.
T Consensus 184 ilDEPts~LD~~~~~~i~~lL~~l~~~~~~til~iTHdl~~~~~~---------~dri~vl~~G~iv 241 (331)
T PRK15079 184 ICDEPVSALDVSIQAQVVNLLQQLQREMGLSLIFIAHDLAVVKHI---------SDRVLVMYLGHAV 241 (331)
T ss_pred EEeCCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHh---------CCEEEEEECCEEE
Confidence 9999999999987555544 4443 45999999998654321 3556676654443
No 91
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=99.86 E-value=1.1e-21 Score=175.93 Aligned_cols=163 Identities=20% Similarity=0.182 Sum_probs=114.1
Q ss_pred CCCCeEEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCccccccccccccceEEEECCEeecccCccccccccccCcccc
Q 018394 8 AGEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRG 87 (356)
Q Consensus 8 ~~~s~~v~~~~g~~v~LvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~~D~pGl~~~~~~~~~~~ 87 (356)
.++||++.+ |++++|+|+||||||||+++|+|...+ ..|.+.++|.++..+.............++.
T Consensus 15 ~~vs~~i~~--Ge~~~i~G~nGsGKSTLl~~l~G~~~~-----------~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~ 81 (206)
T TIGR03608 15 DDLNLTIEK--GKMYAIIGESGSGKSTLLNIIGLLEKF-----------DSGQVYLNGKETPPLNSKKASKFRREKLGYL 81 (206)
T ss_pred eceEEEEeC--CcEEEEECCCCCCHHHHHHHHhcCCCC-----------CCeEEEECCEEccccchhhHHHHHHhCeeEE
Confidence 589999999 889999999999999999999999866 7899999998754221100000111233443
Q ss_pred cccccccc---chhHHHHHHhcC--ChHHHHHHHHHHHHHccC--ccccccCcccccceecccee---------eeecCC
Q 018394 88 RQVIAVSK---SSDIVLMVLDAS--KSEGHRQILTKELEAVGL--RLNKRPPQIYFKKKKTGGIS---------FNSTLP 151 (356)
Q Consensus 88 ~~~~~~~~---~~d~i~~v~d~~--~~~~~~~~i~~~L~~~~i--~l~~~~~~lS~g~~qr~~ia---------l~~DEp 151 (356)
.+....+. ..+.+.+..... ......+.+.+.++.+++ .+++.+..||+||+||++++ +++|||
T Consensus 82 ~q~~~~~~~~t~~e~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qr~~laral~~~p~llllDEP 161 (206)
T TIGR03608 82 FQNFALIENETVEENLDLGLKYKKLSKKEKREKKKEALEKVGLNLKLKQKIYELSGGEQQRVALARAILKDPPLILADEP 161 (206)
T ss_pred ecchhhccCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCchhhhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCC
Confidence 44333322 234443322111 122334567888999998 67888999999999999998 999999
Q ss_pred CCCCCHHHHHHHHH---Hhcc-cCcEEEEccCCCHH
Q 018394 152 LTHVDEKLCYQILH---EYKI-HNAEVLFREDATVD 183 (356)
Q Consensus 152 ~~~LD~~~~~~il~---~l~~-~~~~i~~thd~~~~ 183 (356)
|++||+.....+++ .+.. +.+++++||+....
T Consensus 162 t~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~ 197 (206)
T TIGR03608 162 TGSLDPKNRDEVLDLLLELNDEGKTIIIVTHDPEVA 197 (206)
T ss_pred cCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHH
Confidence 99999988655544 4432 45899999997543
No 92
>PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional
Probab=99.86 E-value=1.6e-21 Score=187.33 Aligned_cols=182 Identities=19% Similarity=0.126 Sum_probs=124.9
Q ss_pred CCCCeEEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCccccccccccccceEEEECCEeecccCccccccccccCcccc
Q 018394 8 AGEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRG 87 (356)
Q Consensus 8 ~~~s~~v~~~~g~~v~LvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~~D~pGl~~~~~~~~~~~ 87 (356)
.++||+|.+ |++++|+|+||||||||+++|+|...+- . ...|.|.++|.++.-++...+.......+++.
T Consensus 33 ~~vsl~i~~--Ge~~~ivG~sGsGKSTL~~~l~Gl~~p~----~----~~sG~I~~~G~~i~~~~~~~~~~~r~~~i~~v 102 (330)
T PRK09473 33 NDLNFSLRA--GETLGIVGESGSGKSQTAFALMGLLAAN----G----RIGGSATFNGREILNLPEKELNKLRAEQISMI 102 (330)
T ss_pred eeeEEEEcC--CCEEEEECCCCchHHHHHHHHHcCCCCC----C----CCCeEEEECCEECCcCCHHHHHHHhcCCEEEE
Confidence 589999999 8899999999999999999999998650 0 13899999999876543322211111234555
Q ss_pred ccccc--ccc---chhHHHHHHhc---CChHHHHHHHHHHHHHccC-----ccccccCcccccceecccee---------
Q 018394 88 RQVIA--VSK---SSDIVLMVLDA---SKSEGHRQILTKELEAVGL-----RLNKRPPQIYFKKKKTGGIS--------- 145 (356)
Q Consensus 88 ~~~~~--~~~---~~d~i~~v~d~---~~~~~~~~~i~~~L~~~~i-----~l~~~~~~lS~g~~qr~~ia--------- 145 (356)
+|... ... ..+.+...+.. ....+..+.+.+.|+.+++ .+++++.+||+||+||++||
T Consensus 103 ~Q~~~~~l~p~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~L~~vgL~~~~~~~~~~p~~LSgG~~QRv~IArAL~~~P~l 182 (330)
T PRK09473 103 FQDPMTSLNPYMRVGEQLMEVLMLHKGMSKAEAFEESVRMLDAVKMPEARKRMKMYPHEFSGGMRQRVMIAMALLCRPKL 182 (330)
T ss_pred EcCchhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCChHHHhcCCcccCCHHHHHHHHHHHHHHcCCCE
Confidence 55431 111 22333222221 1222334567888999888 24678999999999999998
Q ss_pred eeecCCCCCCCHHHHHHHHH---Hhcc--cCcEEEEccCCCHHHHHHHHhccccccceEEEeecCCCC
Q 018394 146 FNSTLPLTHVDEKLCYQILH---EYKI--HNAEVLFREDATVDDLIDVIEGNRKYMKCVYVYNKIDVI 208 (356)
Q Consensus 146 l~~DEp~~~LD~~~~~~il~---~l~~--~~~~i~~thd~~~~~~~~~i~~~~~~~p~i~v~NK~Dl~ 208 (356)
+++||||++||.....++++ .+.. +.+++++|||...... ....++|++..-+.
T Consensus 183 lilDEPts~LD~~~~~~i~~lL~~l~~~~g~til~iTHdl~~~~~---------~~Dri~vm~~G~iv 241 (330)
T PRK09473 183 LIADEPTTALDVTVQAQIMTLLNELKREFNTAIIMITHDLGVVAG---------ICDKVLVMYAGRTM 241 (330)
T ss_pred EEEeCCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEECCHHHHHH---------hCCEEEEEECCEEE
Confidence 99999999999988655544 4443 4589999999865432 13567777766554
No 93
>PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional
Probab=99.86 E-value=1.8e-21 Score=186.71 Aligned_cols=183 Identities=17% Similarity=0.136 Sum_probs=124.6
Q ss_pred CCCCeEEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCccccccccccccceEEEECCEeecccCccccccccccCcccc
Q 018394 8 AGEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRG 87 (356)
Q Consensus 8 ~~~s~~v~~~~g~~v~LvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~~D~pGl~~~~~~~~~~~ 87 (356)
.++||++.+ |+++||+|+||||||||+++|+|...+ ++ .+..|.|.++|.++.-++...+.......+++.
T Consensus 24 ~~vsl~i~~--Ge~~~lvG~sGsGKSTL~~~l~Gll~~----~~---~~~~G~i~~~G~~i~~~~~~~~~~~r~~~i~~v 94 (326)
T PRK11022 24 DRISYSVKQ--GEVVGIVGESGSGKSVSSLAIMGLIDY----PG---RVMAEKLEFNGQDLQRISEKERRNLVGAEVAMI 94 (326)
T ss_pred eeeEEEECC--CCEEEEECCCCChHHHHHHHHHcCCCC----CC---CCcceEEEECCEECCcCCHHHHHHHhCCCEEEE
Confidence 589999999 889999999999999999999998753 11 136899999999875443222211111234444
Q ss_pred ccccc--cccc---hhHHHHHHhc---CChHHHHHHHHHHHHHccC-----ccccccCcccccceecccee---------
Q 018394 88 RQVIA--VSKS---SDIVLMVLDA---SKSEGHRQILTKELEAVGL-----RLNKRPPQIYFKKKKTGGIS--------- 145 (356)
Q Consensus 88 ~~~~~--~~~~---~d~i~~v~d~---~~~~~~~~~i~~~L~~~~i-----~l~~~~~~lS~g~~qr~~ia--------- 145 (356)
+|... .... .+.+...+.. ....+..+.+.++|+.+++ .+++++.+||+||+||++||
T Consensus 95 ~Q~~~~~l~p~~~v~~~i~~~l~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~l~~~p~~LSgGq~QRv~iArAL~~~P~l 174 (326)
T PRK11022 95 FQDPMTSLNPCYTVGFQIMEAIKVHQGGNKKTRRQRAIDLLNQVGIPDPASRLDVYPHQLSGGMSQRVMIAMAIACRPKL 174 (326)
T ss_pred ecCchhhcCCcCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChHHHHhCCchhCCHHHHHHHHHHHHHHhCCCE
Confidence 54331 1111 1222222221 1223345678889999998 35789999999999999998
Q ss_pred eeecCCCCCCCHHHHHHHHH---Hhcc--cCcEEEEccCCCHHHHHHHHhccccccceEEEeecCCCC
Q 018394 146 FNSTLPLTHVDEKLCYQILH---EYKI--HNAEVLFREDATVDDLIDVIEGNRKYMKCVYVYNKIDVI 208 (356)
Q Consensus 146 l~~DEp~~~LD~~~~~~il~---~l~~--~~~~i~~thd~~~~~~~~~i~~~~~~~p~i~v~NK~Dl~ 208 (356)
+++||||++||.....++++ .+.. +.+++++|||...... ....+++++..-+.
T Consensus 175 lilDEPts~LD~~~~~~il~lL~~l~~~~g~til~iTHdl~~~~~---------~adri~vm~~G~iv 233 (326)
T PRK11022 175 LIADEPTTALDVTIQAQIIELLLELQQKENMALVLITHDLALVAE---------AAHKIIVMYAGQVV 233 (326)
T ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHH---------hCCEEEEEECCEEE
Confidence 99999999999988655544 4432 4589999999875432 13567777765443
No 94
>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=99.86 E-value=2e-21 Score=184.54 Aligned_cols=182 Identities=16% Similarity=0.176 Sum_probs=129.2
Q ss_pred CCCCeEEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCccccccccccccceEEEECCEeecccCccccccccccCcccc
Q 018394 8 AGEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRG 87 (356)
Q Consensus 8 ~~~s~~v~~~~g~~v~LvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~~D~pGl~~~~~~~~~~~ 87 (356)
+++||++.+ |+++||+||||||||||+++|+|...+ ..|.|.++|.++.- +... ....+++.
T Consensus 19 ~~is~~i~~--Gei~~l~G~NGaGKTTLl~~l~Gl~~~-----------~~G~i~i~g~~~~~-~~~~----~~~~ig~~ 80 (301)
T TIGR03522 19 DEVSFEAQK--GRIVGFLGPNGAGKSTTMKIITGYLPP-----------DSGSVQVCGEDVLQ-NPKE----VQRNIGYL 80 (301)
T ss_pred EEeEEEEeC--CeEEEEECCCCCCHHHHHHHHhCCCCC-----------CceEEEECCEEccc-ChHH----HHhceEEe
Confidence 588999999 889999999999999999999999876 89999999987642 1111 12234444
Q ss_pred cccccccc---chhHHHHHHhcCC--hHHHHHHHHHHHHHccC--ccccccCcccccceecccee---------eeecCC
Q 018394 88 RQVIAVSK---SSDIVLMVLDASK--SEGHRQILTKELEAVGL--RLNKRPPQIYFKKKKTGGIS---------FNSTLP 151 (356)
Q Consensus 88 ~~~~~~~~---~~d~i~~v~d~~~--~~~~~~~i~~~L~~~~i--~l~~~~~~lS~g~~qr~~ia---------l~~DEp 151 (356)
.+....+. ..+.+.+...... .....+.+.+.|+.+++ ..++++..||+||+||+++| +++|||
T Consensus 81 ~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~la~al~~~p~lliLDEP 160 (301)
T TIGR03522 81 PEHNPLYLDMYVREYLQFIAGIYGMKGQLLKQRVEEMIELVGLRPEQHKKIGQLSKGYRQRVGLAQALIHDPKVLILDEP 160 (301)
T ss_pred cCCCCCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchHhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEcCC
Confidence 44433332 3455444333222 22234567888999999 67899999999999999988 999999
Q ss_pred CCCCCHHHHHH---HHHHhcccCcEEEEccCCCHHHHHHHHhccccccceEEEeecCCCCChhhHHHH
Q 018394 152 LTHVDEKLCYQ---ILHEYKIHNAEVLFREDATVDDLIDVIEGNRKYMKCVYVYNKIDVIGIDDVDKL 216 (356)
Q Consensus 152 ~~~LD~~~~~~---il~~l~~~~~~i~~thd~~~~~~~~~i~~~~~~~p~i~v~NK~Dl~~~~~~~~l 216 (356)
|++||+..... +++.+..+.+++++||+.+..+- .+..+++++..-+......+.+
T Consensus 161 t~gLD~~~~~~l~~~l~~~~~~~tiii~sH~l~~~~~---------~~d~i~~l~~G~i~~~g~~~~~ 219 (301)
T TIGR03522 161 TTGLDPNQLVEIRNVIKNIGKDKTIILSTHIMQEVEA---------ICDRVIIINKGKIVADKKLDEL 219 (301)
T ss_pred cccCCHHHHHHHHHHHHHhcCCCEEEEEcCCHHHHHH---------hCCEEEEEECCEEEEeCCHHHH
Confidence 99999987544 45555445699999999864322 2367778877655433333333
No 95
>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein. Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.
Probab=99.86 E-value=1e-21 Score=191.15 Aligned_cols=163 Identities=18% Similarity=0.248 Sum_probs=119.8
Q ss_pred CCCCeEEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCccccccccccccceEEEECCEe----ecccCccccccccccC
Q 018394 8 AGEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTK----IQLLDLPGIIEGASEG 83 (356)
Q Consensus 8 ~~~s~~v~~~~g~~v~LvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~----i~~~D~pGl~~~~~~~ 83 (356)
.++||++.+ |++++|+|+||||||||+++|+|...| ..|.|.++|.+ +.-.+...+.......
T Consensus 41 ~~vsf~i~~--Gei~~I~G~nGsGKSTLlr~L~Gl~~p-----------~~G~I~idG~~~~~~i~~~~~~~l~~~r~~~ 107 (382)
T TIGR03415 41 ANASLDIEE--GEICVLMGLSGSGKSSLLRAVNGLNPV-----------SRGSVLVKDGDGSIDVANCDAATLRRLRTHR 107 (382)
T ss_pred EeeEEEEcC--CCEEEEECCCCCcHHHHHHHHhCCCCC-----------CCcEEEECCEecccccccCCHHHHHHHhcCC
Confidence 589999999 889999999999999999999999876 89999999963 3222222221111234
Q ss_pred ccccccccccccc---hhHHHHHHhcC--ChHHHHHHHHHHHHHccC--ccccccCcccccceecccee---------ee
Q 018394 84 KGRGRQVIAVSKS---SDIVLMVLDAS--KSEGHRQILTKELEAVGL--RLNKRPPQIYFKKKKTGGIS---------FN 147 (356)
Q Consensus 84 ~~~~~~~~~~~~~---~d~i~~v~d~~--~~~~~~~~i~~~L~~~~i--~l~~~~~~lS~g~~qr~~ia---------l~ 147 (356)
+++.+|....+.. .+++.+..... ........+.+.|+.+++ ..++++.+||+||+||++|+ ++
T Consensus 108 i~~vfQ~~~l~p~~Tv~eNi~~~~~~~g~~~~~~~~~a~e~le~vgL~~~~~~~~~~LSgGq~QRV~LARALa~~P~ILL 187 (382)
T TIGR03415 108 VSMVFQKFALMPWLTVEENVAFGLEMQGMPEAERRKRVDEQLELVGLAQWADKKPGELSGGMQQRVGLARAFAMDADILL 187 (382)
T ss_pred EEEEECCCcCCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEE
Confidence 5666665555543 45554433221 223344567889999999 78889999999999999998 99
Q ss_pred ecCCCCCCCHHHHHHHHHHh---cc--cCcEEEEccCCCHH
Q 018394 148 STLPLTHVDEKLCYQILHEY---KI--HNAEVLFREDATVD 183 (356)
Q Consensus 148 ~DEp~~~LD~~~~~~il~~l---~~--~~~~i~~thd~~~~ 183 (356)
+||||++||+....++.+.+ .. +.|++++|||.+..
T Consensus 188 lDEPts~LD~~~r~~l~~~L~~l~~~~~~TII~iTHdl~e~ 228 (382)
T TIGR03415 188 MDEPFSALDPLIRTQLQDELLELQAKLNKTIIFVSHDLDEA 228 (382)
T ss_pred EECCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHH
Confidence 99999999999865554444 32 45999999997653
No 96
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=99.86 E-value=1.7e-21 Score=176.66 Aligned_cols=158 Identities=19% Similarity=0.175 Sum_probs=113.7
Q ss_pred CCCCeEEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCccccccccccccceEEEECCEeecccCccccccccccCcccc
Q 018394 8 AGEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRG 87 (356)
Q Consensus 8 ~~~s~~v~~~~g~~v~LvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~~D~pGl~~~~~~~~~~~ 87 (356)
+++||++.+ |+.++|+|+||||||||+++|+|...+ ..|.+.++|.++... . .......++.
T Consensus 19 ~~is~~i~~--Ge~~~i~G~nGsGKSTLl~~l~Gl~~~-----------~~G~i~~~g~~~~~~--~---~~~~~~i~~v 80 (220)
T cd03263 19 DDLSLNVYK--GEIFGLLGHNGAGKTTTLKMLTGELRP-----------TSGTAYINGYSIRTD--R---KAARQSLGYC 80 (220)
T ss_pred cceEEEEcC--CcEEEEECCCCCCHHHHHHHHhCCCCC-----------CCcEEEECCEecccc--h---HHHhhhEEEe
Confidence 689999999 889999999999999999999999866 799999999876421 1 0111223333
Q ss_pred ccccccc---cchhHHHHHHhcC--ChHHHHHHHHHHHHHccC--ccccccCcccccceecccee---------eeecCC
Q 018394 88 RQVIAVS---KSSDIVLMVLDAS--KSEGHRQILTKELEAVGL--RLNKRPPQIYFKKKKTGGIS---------FNSTLP 151 (356)
Q Consensus 88 ~~~~~~~---~~~d~i~~v~d~~--~~~~~~~~i~~~L~~~~i--~l~~~~~~lS~g~~qr~~ia---------l~~DEp 151 (356)
.|....+ ...+.+.+..... ......+.+.++++.+++ .+++.+..||+||+||+.|+ +++|||
T Consensus 81 ~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEP 160 (220)
T cd03263 81 PQFDALFDELTVREHLRFYARLKGLPKSEIKEEVELLLRVLGLTDKANKRARTLSGGMKRKLSLAIALIGGPSVLLLDEP 160 (220)
T ss_pred cCcCCccccCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHhChhhhCCHHHHHHHHHHHHHhcCCCEEEECCC
Confidence 4433222 2244443332211 122233567788999998 67888999999999999988 999999
Q ss_pred CCCCCHHHHHHH---HHHhcccCcEEEEccCCCHH
Q 018394 152 LTHVDEKLCYQI---LHEYKIHNAEVLFREDATVD 183 (356)
Q Consensus 152 ~~~LD~~~~~~i---l~~l~~~~~~i~~thd~~~~ 183 (356)
|++||+.....+ |+.+....+++++||+....
T Consensus 161 ~~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~ 195 (220)
T cd03263 161 TSGLDPASRRAIWDLILEVRKGRSIILTTHSMDEA 195 (220)
T ss_pred CCCCCHHHHHHHHHHHHHHhcCCEEEEEcCCHHHH
Confidence 999999885555 44444446899999997643
No 97
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=99.86 E-value=3.3e-21 Score=173.75 Aligned_cols=161 Identities=18% Similarity=0.156 Sum_probs=114.5
Q ss_pred CCCCeEEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCccccccccccccceEEEECCEeecccCccccccccccCcccc
Q 018394 8 AGEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRG 87 (356)
Q Consensus 8 ~~~s~~v~~~~g~~v~LvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~~D~pGl~~~~~~~~~~~ 87 (356)
.++||++.+ |++++|+|+|||||||||++|+|...+ ..|.+.++|.++.....+. ......+++.
T Consensus 17 ~~~s~~i~~--G~~~~l~G~nGsGKSTLl~~l~G~~~~-----------~~G~i~~~g~~~~~~~~~~--~~~~~~i~~~ 81 (213)
T cd03262 17 KGIDLTVKK--GEVVVIIGPSGSGKSTLLRCINLLEEP-----------DSGTIIIDGLKLTDDKKNI--NELRQKVGMV 81 (213)
T ss_pred cCceEEECC--CCEEEEECCCCCCHHHHHHHHhCCCCC-----------CCceEEECCEECCccchhH--HHHHhcceEE
Confidence 588999999 889999999999999999999999866 7999999998764211110 0111234444
Q ss_pred cccccccc---chhHHHHHH---hcCChHHHHHHHHHHHHHccC--ccccccCcccccceecccee---------eeecC
Q 018394 88 RQVIAVSK---SSDIVLMVL---DASKSEGHRQILTKELEAVGL--RLNKRPPQIYFKKKKTGGIS---------FNSTL 150 (356)
Q Consensus 88 ~~~~~~~~---~~d~i~~v~---d~~~~~~~~~~i~~~L~~~~i--~l~~~~~~lS~g~~qr~~ia---------l~~DE 150 (356)
.|....+. ..+.+.+.. .........+.+.+.++.+++ .+++.+.+||+||+||++++ +++||
T Consensus 82 ~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDE 161 (213)
T cd03262 82 FQQFNLFPHLTVLENITLAPIKVKGMSKAEAEERALELLEKVGLADKADAYPAQLSGGQQQRVAIARALAMNPKVMLFDE 161 (213)
T ss_pred ecccccCCCCcHHHHHHhHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhhCccccCHHHHHHHHHHHHHhcCCCEEEEeC
Confidence 44433332 244443321 111222334567788999998 67899999999999999988 99999
Q ss_pred CCCCCCHHHHH---HHHHHhcc-cCcEEEEccCCCHH
Q 018394 151 PLTHVDEKLCY---QILHEYKI-HNAEVLFREDATVD 183 (356)
Q Consensus 151 p~~~LD~~~~~---~il~~l~~-~~~~i~~thd~~~~ 183 (356)
||++||+.... ++++++.. +.+++++||+.+..
T Consensus 162 P~~~LD~~~~~~l~~~l~~~~~~~~tvi~~sh~~~~~ 198 (213)
T cd03262 162 PTSALDPELVGEVLDVMKDLAEEGMTMVVVTHEMGFA 198 (213)
T ss_pred CccCCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHH
Confidence 99999998754 44555543 45899999997543
No 98
>COG1160 Predicted GTPases [General function prediction only]
Probab=99.86 E-value=5.1e-22 Score=191.79 Aligned_cols=204 Identities=23% Similarity=0.282 Sum_probs=141.1
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHcCC-CCccccccccccccceEEEECCEeecccCccccccccccCccc----ccccccc
Q 018394 19 HGRVALIGFPSVGKSTLLTLLTGTH-SEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGR----GRQVIAV 93 (356)
Q Consensus 19 g~~v~LvG~~gaGKSTLln~L~g~~-~~vs~~p~TT~~~~~G~i~~~g~~i~~~D~pGl~~~~~~~~~~----~~~~~~~ 93 (356)
...+||||+||+|||||+|+|+|.. +.|++.||||||+..-.+.++|..+.++||+|+++...-..+. .......
T Consensus 178 ~ikiaiiGrPNvGKSsLiN~ilgeeR~Iv~~~aGTTRD~I~~~~e~~~~~~~liDTAGiRrk~ki~e~~E~~Sv~rt~~a 257 (444)
T COG1160 178 PIKIAIIGRPNVGKSSLINAILGEERVIVSDIAGTTRDSIDIEFERDGRKYVLIDTAGIRRKGKITESVEKYSVARTLKA 257 (444)
T ss_pred ceEEEEEeCCCCCchHHHHHhccCceEEecCCCCccccceeeeEEECCeEEEEEECCCCCcccccccceEEEeehhhHhH
Confidence 3799999999999999999999998 5799999999999999999999999999999998643221110 1112223
Q ss_pred ccchhHHHHHHhcCChHHHHHHHHHHHHHccCccccccCcccccceeccceeeeecCCCCCCCHHHHHHHHHHhcccCcE
Q 018394 94 SKSSDIVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNAE 173 (356)
Q Consensus 94 ~~~~d~i~~v~d~~~~~~~~~~i~~~L~~~~i~l~~~~~~lS~g~~qr~~ial~~DEp~~~LD~~~~~~il~~l~~~~~~ 173 (356)
+..+|++++|+|++.+..+++ ..
T Consensus 258 I~~a~vvllviDa~~~~~~qD------------------------------------------~~--------------- 280 (444)
T COG1160 258 IERADVVLLVIDATEGISEQD------------------------------------------LR--------------- 280 (444)
T ss_pred HhhcCEEEEEEECCCCchHHH------------------------------------------HH---------------
Confidence 344666666666665433222 11
Q ss_pred EEEccCCCHHHHHHHHhccccccceEEEeecCCCCCh--hhHHHH----h------cCCCEEEeccccccchHHHHHHHH
Q 018394 174 VLFREDATVDDLIDVIEGNRKYMKCVYVYNKIDVIGI--DDVDKL----A------RQPNSVVISCNLKLNLDRLLARMW 241 (356)
Q Consensus 174 i~~thd~~~~~~~~~i~~~~~~~p~i~v~NK~Dl~~~--~~~~~l----~------~~~~~i~iSa~~~~~l~~L~~~i~ 241 (356)
++..+. ...++.++|+||||+... ...+.. . .+.+++++||+++.+++.|.+.+.
T Consensus 281 -----------ia~~i~--~~g~~~vIvvNKWDl~~~~~~~~~~~k~~i~~~l~~l~~a~i~~iSA~~~~~i~~l~~~i~ 347 (444)
T COG1160 281 -----------IAGLIE--EAGRGIVIVVNKWDLVEEDEATMEEFKKKLRRKLPFLDFAPIVFISALTGQGLDKLFEAIK 347 (444)
T ss_pred -----------HHHHHH--HcCCCeEEEEEccccCCchhhHHHHHHHHHHHHhccccCCeEEEEEecCCCChHHHHHHHH
Confidence 111111 124699999999999764 222221 1 245799999999999999888776
Q ss_pred HHhCc--eEEEe-------------CCC----CC--------CCCCCccEEeecCCCCCCHHHHHHHHHHhHhhcCcEeE
Q 018394 242 EEMGL--VRVYT-------------KPQ----GQ--------QPDFTEPVVLSVDRGGCTVEDFCNHIHRSLVKDVKYVL 294 (356)
Q Consensus 242 ~~l~~--i~~~~-------------~~~----~~--------~p~~~~~~~~~~~r~g~~v~~~a~~ih~~l~~~f~~a~ 294 (356)
+.... .++-| .+| |. .....+|.++-. +..++.+...+.++|.+.|+.++
T Consensus 348 ~~~~~~~~ri~Ts~LN~~l~~a~~~~pP~~~~G~r~ki~Ya~q~~~~PP~fvlf---~N~~~~~~~sY~RyL~n~~R~~f 424 (444)
T COG1160 348 EIYECATRRISTSLLNRVLEDAVAKHPPPVRYGRRLKIKYATQVSTNPPTFVLF---GNRPKALHFSYKRYLENRLRKAF 424 (444)
T ss_pred HHHHHhccccCHHHHHHHHHHHHHhCCCCccCCceEEEEEEecCCCCCCEEEEE---ecchhhCchHHHHHHHHHHHHHc
Confidence 54331 01111 011 11 224556777777 88899999999999999999998
Q ss_pred E
Q 018394 295 V 295 (356)
Q Consensus 295 ~ 295 (356)
.
T Consensus 425 ~ 425 (444)
T COG1160 425 G 425 (444)
T ss_pred C
Confidence 7
No 99
>PRK11144 modC molybdate transporter ATP-binding protein; Provisional
Probab=99.86 E-value=2.1e-21 Score=188.09 Aligned_cols=173 Identities=14% Similarity=0.100 Sum_probs=121.3
Q ss_pred CCCeEEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCccccccccccccceEEEECCEeecccCccccccccccCccccc
Q 018394 9 GEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGR 88 (356)
Q Consensus 9 ~~s~~v~~~~g~~v~LvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~~D~pGl~~~~~~~~~~~~ 88 (356)
++||++.+ |++++|+||||||||||+++|+|...+ ..|.+.++|.++.-.+...........+++..
T Consensus 16 ~vsl~i~~--Ge~~~l~G~nGsGKSTLl~~iaGl~~p-----------~~G~I~~~g~~~~~~~~~~~~~~~~~~i~~v~ 82 (352)
T PRK11144 16 TVNLTLPA--QGITAIFGRSGAGKTSLINAISGLTRP-----------QKGRIVLNGRVLFDAEKGICLPPEKRRIGYVF 82 (352)
T ss_pred EEEEEEcC--CCEEEEECCCCCCHHHHHHHHhCCCCC-----------CceEEEECCEEccccccccccchhhCCEEEEc
Confidence 68888988 789999999999999999999999876 79999999987642110000011123345555
Q ss_pred cccccccc---hhHHHHHHhcCChHHHHHHHHHHHHHccC--ccccccCcccccceecccee---------eeecCCCCC
Q 018394 89 QVIAVSKS---SDIVLMVLDASKSEGHRQILTKELEAVGL--RLNKRPPQIYFKKKKTGGIS---------FNSTLPLTH 154 (356)
Q Consensus 89 ~~~~~~~~---~d~i~~v~d~~~~~~~~~~i~~~L~~~~i--~l~~~~~~lS~g~~qr~~ia---------l~~DEp~~~ 154 (356)
|....+.. .+.+.+... ....+.+.+.|+.+++ .+++.+..||+||+||++|| +++||||++
T Consensus 83 q~~~l~~~~tv~enl~~~~~----~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qRvalaraL~~~p~llLLDEPts~ 158 (352)
T PRK11144 83 QDARLFPHYKVRGNLRYGMA----KSMVAQFDKIVALLGIEPLLDRYPGSLSGGEKQRVAIGRALLTAPELLLMDEPLAS 158 (352)
T ss_pred CCcccCCCCcHHHHHHhhhh----hhhHHHHHHHHHHcCCchhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEcCCccc
Confidence 55444443 344433221 1223567888999999 67899999999999999998 999999999
Q ss_pred CCHHHHHHHH---HHhcc--cCcEEEEccCCCHHHHHHHHhccccccceEEEeecCCC
Q 018394 155 VDEKLCYQIL---HEYKI--HNAEVLFREDATVDDLIDVIEGNRKYMKCVYVYNKIDV 207 (356)
Q Consensus 155 LD~~~~~~il---~~l~~--~~~~i~~thd~~~~~~~~~i~~~~~~~p~i~v~NK~Dl 207 (356)
||+.....++ +.+.. +.+++++|||.+.... .+..+++++..-+
T Consensus 159 LD~~~~~~l~~~L~~l~~~~g~tii~vTHd~~~~~~---------~~d~i~~l~~G~i 207 (352)
T PRK11144 159 LDLPRKRELLPYLERLAREINIPILYVSHSLDEILR---------LADRVVVLEQGKV 207 (352)
T ss_pred CCHHHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHH---------hCCEEEEEeCCEE
Confidence 9998755444 44432 4589999999754321 1356667765543
No 100
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.86 E-value=2e-21 Score=175.02 Aligned_cols=157 Identities=17% Similarity=0.147 Sum_probs=113.1
Q ss_pred CCCCeEEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCccccccccccccceEEEECCEeecccCccccccccccCcccc
Q 018394 8 AGEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRG 87 (356)
Q Consensus 8 ~~~s~~v~~~~g~~v~LvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~~D~pGl~~~~~~~~~~~ 87 (356)
+++||++.+ | +++|+|+||||||||+++|+|...+ ..|.+.++|.++...+ +. ....+++.
T Consensus 17 ~~vs~~i~~--g-~~~i~G~nGsGKSTLl~~l~Gl~~~-----------~~G~i~~~g~~~~~~~-~~----~~~~i~~~ 77 (211)
T cd03264 17 DGVSLTLGP--G-MYGLLGPNGAGKTTLMRILATLTPP-----------SSGTIRIDGQDVLKQP-QK----LRRRIGYL 77 (211)
T ss_pred cceeEEEcC--C-cEEEECCCCCCHHHHHHHHhCCCCC-----------CccEEEECCCccccch-HH----HHhheEEe
Confidence 589999999 7 9999999999999999999999866 7899999998764221 11 11223333
Q ss_pred cccccccc---chhHHHHHHhc--CChHHHHHHHHHHHHHccC--ccccccCcccccceecccee---------eeecCC
Q 018394 88 RQVIAVSK---SSDIVLMVLDA--SKSEGHRQILTKELEAVGL--RLNKRPPQIYFKKKKTGGIS---------FNSTLP 151 (356)
Q Consensus 88 ~~~~~~~~---~~d~i~~v~d~--~~~~~~~~~i~~~L~~~~i--~l~~~~~~lS~g~~qr~~ia---------l~~DEp 151 (356)
.|....+. ..+.+.+.... .......+.+.+.++.+++ .+++.+..||+||+||+.++ +++|||
T Consensus 78 ~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEP 157 (211)
T cd03264 78 PQEFGVYPNFTVREFLDYIAWLKGIPSKEVKARVDEVLELVNLGDRAKKKIGSLSGGMRRRVGIAQALVGDPSILIVDEP 157 (211)
T ss_pred cCCCcccccCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCHHHHhCchhhCCHHHHHHHHHHHHHhcCCCEEEEcCC
Confidence 44333332 23444332211 1122234567788999999 57889999999999999998 999999
Q ss_pred CCCCCHHHHHH---HHHHhcccCcEEEEccCCCHH
Q 018394 152 LTHVDEKLCYQ---ILHEYKIHNAEVLFREDATVD 183 (356)
Q Consensus 152 ~~~LD~~~~~~---il~~l~~~~~~i~~thd~~~~ 183 (356)
|++||+..... +++.+....+++++||+....
T Consensus 158 t~~LD~~~~~~l~~~l~~~~~~~tii~vsH~~~~~ 192 (211)
T cd03264 158 TAGLDPEERIRFRNLLSELGEDRIVILSTHIVEDV 192 (211)
T ss_pred cccCCHHHHHHHHHHHHHHhCCCEEEEEcCCHHHH
Confidence 99999988554 444554456999999997653
No 101
>PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed
Probab=99.86 E-value=1.4e-21 Score=191.50 Aligned_cols=173 Identities=16% Similarity=0.169 Sum_probs=124.2
Q ss_pred CCCCeEEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCccccccccccccceEEEECCEeecccCccccccccccCcccc
Q 018394 8 AGEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRG 87 (356)
Q Consensus 8 ~~~s~~v~~~~g~~v~LvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~~D~pGl~~~~~~~~~~~ 87 (356)
+++||++.+ |++++|+|||||||||||++|+|...| .+|.|.++|.++.-.+...+ ...++..
T Consensus 20 ~~vs~~i~~--Geiv~liGpNGaGKSTLLk~LaGll~p-----------~sG~I~l~G~~i~~~~~~~~----~~~ig~v 82 (402)
T PRK09536 20 DGVDLSVRE--GSLVGLVGPNGAGKTTLLRAINGTLTP-----------TAGTVLVAGDDVEALSARAA----SRRVASV 82 (402)
T ss_pred EeeEEEECC--CCEEEEECCCCchHHHHHHHHhcCCCC-----------CCcEEEECCEEcCcCCHHHH----hcceEEE
Confidence 589999999 889999999999999999999999876 79999999988754332211 1223444
Q ss_pred cccccc---ccchhHHHHHHh----cCC--hHHHHHHHHHHHHHccC--ccccccCcccccceecccee---------ee
Q 018394 88 RQVIAV---SKSSDIVLMVLD----ASK--SEGHRQILTKELEAVGL--RLNKRPPQIYFKKKKTGGIS---------FN 147 (356)
Q Consensus 88 ~~~~~~---~~~~d~i~~v~d----~~~--~~~~~~~i~~~L~~~~i--~l~~~~~~lS~g~~qr~~ia---------l~ 147 (356)
.|.... +...+++.+... ... ...+.+.+.+.|+.+++ ..++++.+||+||+||++|| ++
T Consensus 83 ~q~~~l~~~~tv~e~v~~~~~~~~~~~~~~~~~~~~~v~~~le~vgl~~~~~~~~~~LSgGerQRv~IArAL~~~P~iLL 162 (402)
T PRK09536 83 PQDTSLSFEFDVRQVVEMGRTPHRSRFDTWTETDRAAVERAMERTGVAQFADRPVTSLSGGERQRVLLARALAQATPVLL 162 (402)
T ss_pred ccCCCCCCCCCHHHHHHhccchhcccccCCCHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHcCCCEEE
Confidence 443322 233444433211 111 23445678899999999 67899999999999999998 99
Q ss_pred ecCCCCCCCHHHH---HHHHHHhcc-cCcEEEEccCCCHHHHHHHHhccccccceEEEeecCC
Q 018394 148 STLPLTHVDEKLC---YQILHEYKI-HNAEVLFREDATVDDLIDVIEGNRKYMKCVYVYNKID 206 (356)
Q Consensus 148 ~DEp~~~LD~~~~---~~il~~l~~-~~~~i~~thd~~~~~~~~~i~~~~~~~p~i~v~NK~D 206 (356)
+||||++||+... .++|+++.. +.++++++|+.+.... .+..++++++.-
T Consensus 163 LDEPtsgLD~~~~~~l~~lL~~l~~~g~TIIivsHdl~~~~~---------~adrii~l~~G~ 216 (402)
T PRK09536 163 LDEPTASLDINHQVRTLELVRRLVDDGKTAVAAIHDLDLAAR---------YCDELVLLADGR 216 (402)
T ss_pred EECCcccCCHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHH---------hCCEEEEEECCE
Confidence 9999999999874 455555543 4599999999765432 235666666553
No 102
>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.86 E-value=3.7e-21 Score=173.72 Aligned_cols=160 Identities=21% Similarity=0.235 Sum_probs=111.8
Q ss_pred CCCeEEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCccccccccccccceEEEECCEeecccCcc-ccccccccCcccc
Q 018394 9 GEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLP-GIIEGASEGKGRG 87 (356)
Q Consensus 9 ~~s~~v~~~~g~~v~LvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~~D~p-Gl~~~~~~~~~~~ 87 (356)
+++|++.+ + +++|+|+||||||||+++|+|...| ..|.+.++|.++...... ... .....+++.
T Consensus 16 ~vsl~i~~-e--~~~i~G~nGsGKSTLl~~l~G~~~~-----------~~G~i~~~g~~~~~~~~~~~~~-~~~~~i~~~ 80 (214)
T cd03297 16 KIDFDLNE-E--VTGIFGASGAGKSTLLRCIAGLEKP-----------DGGTIVLNGTVLFDSRKKINLP-PQQRKIGLV 80 (214)
T ss_pred CceEEEcc-e--eEEEECCCCCCHHHHHHHHhCCCCC-----------CCceEEECCEecccccchhhhh-hHhhcEEEE
Confidence 78888887 5 9999999999999999999999866 789999999876421100 000 011223444
Q ss_pred cccccccc---chhHHHHHHhcCChHHHHHHHHHHHHHccC--ccccccCcccccceecccee---------eeecCCCC
Q 018394 88 RQVIAVSK---SSDIVLMVLDASKSEGHRQILTKELEAVGL--RLNKRPPQIYFKKKKTGGIS---------FNSTLPLT 153 (356)
Q Consensus 88 ~~~~~~~~---~~d~i~~v~d~~~~~~~~~~i~~~L~~~~i--~l~~~~~~lS~g~~qr~~ia---------l~~DEp~~ 153 (356)
.|....+. ..+.+.+...........+.+.++++.+++ .+++++..||+||+||+.|+ +++||||+
T Consensus 81 ~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEPt~ 160 (214)
T cd03297 81 FQQYALFPHLNVRENLAFGLKRKRNREDRISVDELLDLLGLDHLLNRYPAQLSGGEKQRVALARALAAQPELLLLDEPFS 160 (214)
T ss_pred ecCCccCCCCCHHHHHHHHHhhCCHHHHHHHHHHHHHHcCCHhHhhcCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcc
Confidence 44333332 244444332222222334567888999999 57889999999999999998 99999999
Q ss_pred CCCHHHHHHH---HHHhcc--cCcEEEEccCCCHH
Q 018394 154 HVDEKLCYQI---LHEYKI--HNAEVLFREDATVD 183 (356)
Q Consensus 154 ~LD~~~~~~i---l~~l~~--~~~~i~~thd~~~~ 183 (356)
+||+.....+ +.++.. +.+++++||+....
T Consensus 161 ~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~ 195 (214)
T cd03297 161 ALDRALRLQLLPELKQIKKNLNIPVIFVTHDLSEA 195 (214)
T ss_pred cCCHHHHHHHHHHHHHHHHHcCcEEEEEecCHHHH
Confidence 9999885554 444433 45899999997643
No 103
>PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.86 E-value=3e-21 Score=182.15 Aligned_cols=176 Identities=18% Similarity=0.144 Sum_probs=121.4
Q ss_pred CCCCeEEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCccccccccccccceEEEECCEeecccCccccccccccCcccc
Q 018394 8 AGEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRG 87 (356)
Q Consensus 8 ~~~s~~v~~~~g~~v~LvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~~D~pGl~~~~~~~~~~~ 87 (356)
++++|++.+ |++++|+|+|||||||||++|+|...| ..|.|.++|.++.....+.-.......+++.
T Consensus 24 ~~vsl~i~~--Ge~~~iiG~NGaGKSTLl~~l~Gl~~p-----------~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~v 90 (287)
T PRK13641 24 DNISFELEE--GSFVALVGHTGSGKSTLMQHFNALLKP-----------SSGTITIAGYHITPETGNKNLKKLRKKVSLV 90 (287)
T ss_pred eeeEEEEeC--CCEEEEECCCCCCHHHHHHHHhcCCCC-----------CCcEEEECCEECccccccchHHHHHhceEEE
Confidence 689999999 889999999999999999999999876 8999999998774221110001112234444
Q ss_pred cccc--cc--ccchhHHHHHHh--cCChHHHHHHHHHHHHHccC---ccccccCcccccceecccee---------eeec
Q 018394 88 RQVI--AV--SKSSDIVLMVLD--ASKSEGHRQILTKELEAVGL---RLNKRPPQIYFKKKKTGGIS---------FNST 149 (356)
Q Consensus 88 ~~~~--~~--~~~~d~i~~v~d--~~~~~~~~~~i~~~L~~~~i---~l~~~~~~lS~g~~qr~~ia---------l~~D 149 (356)
.|.. .. ....+.+.+... ........+.+.++|+.+++ ..++++..||+||+||++|+ +++|
T Consensus 91 ~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGq~qrl~laral~~~p~lLlLD 170 (287)
T PRK13641 91 FQFPEAQLFENTVLKDVEFGPKNFGFSEDEAKEKALKWLKKVGLSEDLISKSPFELSGGQMRRVAIAGVMAYEPEILCLD 170 (287)
T ss_pred EeChhhhhccchHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCChhHhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEE
Confidence 4432 11 122444433221 12223334567888999998 35888999999999999998 9999
Q ss_pred CCCCCCCHHHHHH---HHHHhcc-cCcEEEEccCCCHHHHHHHHhccccccceEEEeecC
Q 018394 150 LPLTHVDEKLCYQ---ILHEYKI-HNAEVLFREDATVDDLIDVIEGNRKYMKCVYVYNKI 205 (356)
Q Consensus 150 Ep~~~LD~~~~~~---il~~l~~-~~~~i~~thd~~~~~~~~~i~~~~~~~p~i~v~NK~ 205 (356)
|||++||+..... +++.+.. +.+++++||+...... .+..+++++..
T Consensus 171 EPt~gLD~~~~~~l~~~l~~l~~~g~tvlivsH~~~~~~~---------~~d~v~~l~~G 221 (287)
T PRK13641 171 EPAAGLDPEGRKEMMQLFKDYQKAGHTVILVTHNMDDVAE---------YADDVLVLEHG 221 (287)
T ss_pred CCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHH---------hCCEEEEEECC
Confidence 9999999988554 4444433 4599999999764321 23566677654
No 104
>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.86 E-value=3.8e-21 Score=173.22 Aligned_cols=157 Identities=18% Similarity=0.191 Sum_probs=113.5
Q ss_pred CCCCeEEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCccccccccccccceEEEECCEeecccCccccccccccCcccc
Q 018394 8 AGEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRG 87 (356)
Q Consensus 8 ~~~s~~v~~~~g~~v~LvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~~D~pGl~~~~~~~~~~~ 87 (356)
.++||++.+ |++++|+|+||||||||+++|+|...+ .+|.+.++|.++...+. ....+++.
T Consensus 15 ~~is~~i~~--Ge~~~l~G~nGsGKSTLl~~l~gl~~~-----------~~G~i~~~g~~~~~~~~------~~~~i~~~ 75 (211)
T cd03298 15 MHFDLTFAQ--GEITAIVGPSGSGKSTLLNLIAGFETP-----------QSGRVLINGVDVTAAPP------ADRPVSML 75 (211)
T ss_pred cceEEEEcC--CCEEEEECCCCCCHHHHHHHHhCCCCC-----------CCceEEECCEEcCcCCH------hHccEEEE
Confidence 378899988 889999999999999999999999866 78999999987653221 11233444
Q ss_pred ccccccccc---hhHHHHHHhcC-C-hHHHHHHHHHHHHHccC--ccccccCcccccceecccee---------eeecCC
Q 018394 88 RQVIAVSKS---SDIVLMVLDAS-K-SEGHRQILTKELEAVGL--RLNKRPPQIYFKKKKTGGIS---------FNSTLP 151 (356)
Q Consensus 88 ~~~~~~~~~---~d~i~~v~d~~-~-~~~~~~~i~~~L~~~~i--~l~~~~~~lS~g~~qr~~ia---------l~~DEp 151 (356)
.|....+.. .+.+.+..... . .....+.+.+.++.+++ .+++.+..||+||+||+.++ +++|||
T Consensus 76 ~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~ia~al~~~p~llllDEP 155 (211)
T cd03298 76 FQENNLFAHLTVEQNVGLGLSPGLKLTAEDRQAIEVALARVGLAGLEKRLPGELSGGERQRVALARVLVRDKPVLLLDEP 155 (211)
T ss_pred ecccccCCCCcHHHHHhcccccccCccHHHHHHHHHHHHHcCCHHHHhCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCC
Confidence 444333332 34443322111 1 11234467888999998 57888999999999999988 999999
Q ss_pred CCCCCHHHHHHHHH---Hhcc--cCcEEEEccCCCHH
Q 018394 152 LTHVDEKLCYQILH---EYKI--HNAEVLFREDATVD 183 (356)
Q Consensus 152 ~~~LD~~~~~~il~---~l~~--~~~~i~~thd~~~~ 183 (356)
|++||+.....+++ ++.. +.+++++||+....
T Consensus 156 ~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~ 192 (211)
T cd03298 156 FAALDPALRAEMLDLVLDLHAETKMTVLMVTHQPEDA 192 (211)
T ss_pred cccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHH
Confidence 99999998655544 4432 45899999997643
No 105
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.86 E-value=3e-21 Score=176.50 Aligned_cols=161 Identities=21% Similarity=0.231 Sum_probs=115.4
Q ss_pred CCCCeEEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCccccccccccccceEEEECCEeecccCccccccccccCcccc
Q 018394 8 AGEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRG 87 (356)
Q Consensus 8 ~~~s~~v~~~~g~~v~LvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~~D~pGl~~~~~~~~~~~ 87 (356)
.+++|++.+ |++++|+|+||||||||+++|+|...+ ..|.+.++|.++...+...+. .....+++.
T Consensus 22 ~~~s~~i~~--Ge~~~l~G~nGsGKSTLl~~l~G~~~~-----------~~G~i~~~g~~~~~~~~~~~~-~~~~~i~~~ 87 (233)
T cd03258 22 KDVSLSVPK--GEIFGIIGRSGAGKSTLIRCINGLERP-----------TSGSVLVDGTDLTLLSGKELR-KARRRIGMI 87 (233)
T ss_pred ecceEEEcC--CCEEEEECCCCCCHHHHHHHHhCCCCC-----------CCceEEECCEEcccCCHHHHH-HHHhheEEE
Confidence 688999999 889999999999999999999999876 789999999887533211110 011233444
Q ss_pred cccccccc---chhHHHHHHhc--CChHHHHHHHHHHHHHccC--ccccccCcccccceecccee---------eeecCC
Q 018394 88 RQVIAVSK---SSDIVLMVLDA--SKSEGHRQILTKELEAVGL--RLNKRPPQIYFKKKKTGGIS---------FNSTLP 151 (356)
Q Consensus 88 ~~~~~~~~---~~d~i~~v~d~--~~~~~~~~~i~~~L~~~~i--~l~~~~~~lS~g~~qr~~ia---------l~~DEp 151 (356)
.|....+. ..+.+.+.... .......+.+.+.++.+++ .+++.+..||+||+||++++ +++|||
T Consensus 88 ~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~lllLDEP 167 (233)
T cd03258 88 FQHFNLLSSRTVFENVALPLEIAGVPKAEIEERVLELLELVGLEDKADAYPAQLSGGQKQRVGIARALANNPKVLLCDEA 167 (233)
T ss_pred ccCcccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCChhhhhcChhhCCHHHHHHHHHHHHHhcCCCEEEecCC
Confidence 44433332 24444433221 1122234567888999999 67888999999999999988 999999
Q ss_pred CCCCCHHHHHH---HHHHhcc--cCcEEEEccCCCH
Q 018394 152 LTHVDEKLCYQ---ILHEYKI--HNAEVLFREDATV 182 (356)
Q Consensus 152 ~~~LD~~~~~~---il~~l~~--~~~~i~~thd~~~ 182 (356)
|++||+..... ++.++.. +.+++++||+.+.
T Consensus 168 ~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~~~~ 203 (233)
T cd03258 168 TSALDPETTQSILALLRDINRELGLTIVLITHEMEV 203 (233)
T ss_pred CCcCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHH
Confidence 99999988554 4555443 4589999999754
No 106
>PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional
Probab=99.86 E-value=2.8e-21 Score=185.32 Aligned_cols=178 Identities=19% Similarity=0.176 Sum_probs=124.8
Q ss_pred CCCCeEEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCccccccccccccceEEEECCEeecccCccccccccccCcccc
Q 018394 8 AGEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRG 87 (356)
Q Consensus 8 ~~~s~~v~~~~g~~v~LvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~~D~pGl~~~~~~~~~~~ 87 (356)
.++||+|.+ |+++||+|+||||||||+++|+|...+ ..|.|.++|.++.-.+...+.. ....+++.
T Consensus 32 ~~vsl~i~~--Ge~~~IvG~sGsGKSTLl~~l~gl~~p-----------~~G~i~~~g~~l~~~~~~~~~~-~r~~i~~v 97 (327)
T PRK11308 32 DGVSFTLER--GKTLAVVGESGCGKSTLARLLTMIETP-----------TGGELYYQGQDLLKADPEAQKL-LRQKIQIV 97 (327)
T ss_pred eeeEEEECC--CCEEEEECCCCCcHHHHHHHHHcCCCC-----------CCcEEEECCEEcCcCCHHHHHH-HhCCEEEE
Confidence 588999999 889999999999999999999999866 7899999998875433211111 11234455
Q ss_pred ccccc--ccc---chhHHHHHHhc---CChHHHHHHHHHHHHHccC---ccccccCcccccceecccee---------ee
Q 018394 88 RQVIA--VSK---SSDIVLMVLDA---SKSEGHRQILTKELEAVGL---RLNKRPPQIYFKKKKTGGIS---------FN 147 (356)
Q Consensus 88 ~~~~~--~~~---~~d~i~~v~d~---~~~~~~~~~i~~~L~~~~i---~l~~~~~~lS~g~~qr~~ia---------l~ 147 (356)
+|... ... ..+.+...+.. .......+.+.++|+.+|+ .+++++.+||+||+||++|| ++
T Consensus 98 ~Q~~~~~l~p~~~v~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~p~~LSgGq~QRv~iArAL~~~P~lLi 177 (327)
T PRK11308 98 FQNPYGSLNPRKKVGQILEEPLLINTSLSAAERREKALAMMAKVGLRPEHYDRYPHMFSGGQRQRIAIARALMLDPDVVV 177 (327)
T ss_pred EcCchhhcCCccCHHHHHHHHHHHccCCCHHHHHHHHHHHHHHCCCChHHhcCCCccCCHHHHHHHHHHHHHHcCCCEEE
Confidence 54431 111 12333222211 1223345678899999998 46889999999999999998 99
Q ss_pred ecCCCCCCCHHHHHHHHH---Hhcc--cCcEEEEccCCCHHHHHHHHhccccccceEEEeecCCCC
Q 018394 148 STLPLTHVDEKLCYQILH---EYKI--HNAEVLFREDATVDDLIDVIEGNRKYMKCVYVYNKIDVI 208 (356)
Q Consensus 148 ~DEp~~~LD~~~~~~il~---~l~~--~~~~i~~thd~~~~~~~~~i~~~~~~~p~i~v~NK~Dl~ 208 (356)
+||||++||.....++++ ++.. +.+++++|||......+ ...++++...-+.
T Consensus 178 lDEPts~LD~~~~~~i~~lL~~l~~~~g~til~iTHdl~~~~~~---------adrv~vm~~G~iv 234 (327)
T PRK11308 178 ADEPVSALDVSVQAQVLNLMMDLQQELGLSYVFISHDLSVVEHI---------ADEVMVMYLGRCV 234 (327)
T ss_pred EECCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHh---------CCEEEEEECCEEE
Confidence 999999999988655554 4433 45999999997655321 3567777765544
No 107
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=99.86 E-value=5e-21 Score=174.88 Aligned_cols=159 Identities=18% Similarity=0.204 Sum_probs=113.6
Q ss_pred CCCCeEEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCccccccccccccceEEEECCEeecccCccccccccccCcccc
Q 018394 8 AGEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRG 87 (356)
Q Consensus 8 ~~~s~~v~~~~g~~v~LvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~~D~pGl~~~~~~~~~~~ 87 (356)
+++||++.+ |++++|+|+|||||||||++|+|...| ..|.+.++|.++...+.... .....++.
T Consensus 17 ~~vs~~i~~--Ge~~~l~G~nGsGKSTLl~~l~Gl~~p-----------~~G~i~~~g~~~~~~~~~~~---~~~~i~~~ 80 (232)
T cd03218 17 NGVSLSVKQ--GEIVGLLGPNGAGKTTTFYMIVGLVKP-----------DSGKILLDGQDITKLPMHKR---ARLGIGYL 80 (232)
T ss_pred ccceeEecC--CcEEEEECCCCCCHHHHHHHHhCCCCC-----------CCcEEEECCEecccCCHhHH---HhccEEEe
Confidence 689999999 889999999999999999999999876 78999999987653321110 11123333
Q ss_pred ccccccccc---hhHHHHHHhcC--ChHHHHHHHHHHHHHccC--ccccccCcccccceecccee---------eeecCC
Q 018394 88 RQVIAVSKS---SDIVLMVLDAS--KSEGHRQILTKELEAVGL--RLNKRPPQIYFKKKKTGGIS---------FNSTLP 151 (356)
Q Consensus 88 ~~~~~~~~~---~d~i~~v~d~~--~~~~~~~~i~~~L~~~~i--~l~~~~~~lS~g~~qr~~ia---------l~~DEp 151 (356)
.|....+.. .+.+.+..... ........+.++++.+++ .+++.+..||+||+||+.++ +++|||
T Consensus 81 ~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEP 160 (232)
T cd03218 81 PQEASIFRKLTVEENILAVLEIRGLSKKEREEKLEELLEEFHITHLRKSKASSLSGGERRRVEIARALATNPKFLLLDEP 160 (232)
T ss_pred cCCccccccCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEecCC
Confidence 443333332 34443322211 112233456788899998 57888999999999999988 899999
Q ss_pred CCCCCHHHHHH---HHHHhcc-cCcEEEEccCCCH
Q 018394 152 LTHVDEKLCYQ---ILHEYKI-HNAEVLFREDATV 182 (356)
Q Consensus 152 ~~~LD~~~~~~---il~~l~~-~~~~i~~thd~~~ 182 (356)
|++||...... +++++.. +.+++++||+.+.
T Consensus 161 t~~LD~~~~~~~~~~l~~~~~~~~tii~~sH~~~~ 195 (232)
T cd03218 161 FAGVDPIAVQDIQKIIKILKDRGIGVLITDHNVRE 195 (232)
T ss_pred cccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHH
Confidence 99999988555 4445543 4589999999753
No 108
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=99.86 E-value=4.2e-21 Score=173.77 Aligned_cols=157 Identities=15% Similarity=0.147 Sum_probs=114.6
Q ss_pred CCCCeEEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCccccccccccccceEEEECCEeecccCccccccccccCcccc
Q 018394 8 AGEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRG 87 (356)
Q Consensus 8 ~~~s~~v~~~~g~~v~LvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~~D~pGl~~~~~~~~~~~ 87 (356)
.+++|++.+ |++++|+|+||||||||+++|+|...+ ..|.+.++|.++.. +... ....+++.
T Consensus 22 ~~~sl~i~~--Ge~~~i~G~nGsGKSTLl~~l~Gl~~~-----------~~G~i~~~g~~~~~-~~~~----~~~~i~~~ 83 (218)
T cd03266 22 DGVSFTVKP--GEVTGLLGPNGAGKTTTLRMLAGLLEP-----------DAGFATVDGFDVVK-EPAE----ARRRLGFV 83 (218)
T ss_pred cceEEEEcC--CcEEEEECCCCCCHHHHHHHHhCCcCC-----------CCceEEECCEEccc-CHHH----HHhhEEEe
Confidence 678999999 889999999999999999999999866 78999999987752 1111 11233444
Q ss_pred cccccccc---chhHHHHHHhcC--ChHHHHHHHHHHHHHccC--ccccccCcccccceecccee---------eeecCC
Q 018394 88 RQVIAVSK---SSDIVLMVLDAS--KSEGHRQILTKELEAVGL--RLNKRPPQIYFKKKKTGGIS---------FNSTLP 151 (356)
Q Consensus 88 ~~~~~~~~---~~d~i~~v~d~~--~~~~~~~~i~~~L~~~~i--~l~~~~~~lS~g~~qr~~ia---------l~~DEp 151 (356)
.|....+. ..+++.+..... ......+.+.+.++.+++ .+++.+..||+||+||++++ +++|||
T Consensus 84 ~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~illlDEP 163 (218)
T cd03266 84 SDSTGLYDRLTARENLEYFAGLYGLKGDELTARLEELADRLGMEELLDRRVGGFSTGMRQKVAIARALVHDPPVLLLDEP 163 (218)
T ss_pred cCCcccCcCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHhhhhhhcCHHHHHHHHHHHHHhcCCCEEEEcCC
Confidence 44433333 244443332221 122334567889999999 67889999999999999988 899999
Q ss_pred CCCCCHHHHHH---HHHHhcc-cCcEEEEccCCCH
Q 018394 152 LTHVDEKLCYQ---ILHEYKI-HNAEVLFREDATV 182 (356)
Q Consensus 152 ~~~LD~~~~~~---il~~l~~-~~~~i~~thd~~~ 182 (356)
|++||+..... +|..+.. +.++|++||+...
T Consensus 164 t~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~~ 198 (218)
T cd03266 164 TTGLDVMATRALREFIRQLRALGKCILFSTHIMQE 198 (218)
T ss_pred CcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHH
Confidence 99999988554 4444433 4599999999754
No 109
>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D. This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.
Probab=99.86 E-value=5.6e-21 Score=174.64 Aligned_cols=169 Identities=19% Similarity=0.205 Sum_probs=118.9
Q ss_pred CCCCeEEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCccccccccccccceEEEECCEeecccCccccccccccCcccc
Q 018394 8 AGEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRG 87 (356)
Q Consensus 8 ~~~s~~v~~~~g~~v~LvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~~D~pGl~~~~~~~~~~~ 87 (356)
.++||++.+ |++++|+|+||||||||+++|+|...+ ..|.+.++|.++...+.. .++.
T Consensus 2 ~~is~~i~~--Ge~~~i~G~nGsGKSTLl~~l~Gl~~p-----------~~G~i~~~g~~~~~~~~~---------~~~v 59 (230)
T TIGR01184 2 KGVNLTIQQ--GEFISLIGHSGCGKSTLLNLISGLAQP-----------TSGGVILEGKQITEPGPD---------RMVV 59 (230)
T ss_pred CceeEEEcC--CCEEEEECCCCCCHHHHHHHHhCCCCC-----------CCceEEECCEECCCCChh---------heEE
Confidence 468999999 889999999999999999999999876 799999999876432210 1222
Q ss_pred ccccccc---cchhHHHHHHhc----CChHHHHHHHHHHHHHccC--ccccccCcccccceecccee---------eeec
Q 018394 88 RQVIAVS---KSSDIVLMVLDA----SKSEGHRQILTKELEAVGL--RLNKRPPQIYFKKKKTGGIS---------FNST 149 (356)
Q Consensus 88 ~~~~~~~---~~~d~i~~v~d~----~~~~~~~~~i~~~L~~~~i--~l~~~~~~lS~g~~qr~~ia---------l~~D 149 (356)
.|....+ ...+.+.+.... .......+.+.+.++.+++ .+++.+..||+||+||+.++ +++|
T Consensus 60 ~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLD 139 (230)
T TIGR01184 60 FQNYSLLPWLTVRENIALAVDRVLPDLSKSERRAIVEEHIALVGLTEAADKRPGQLSGGMKQRVAIARALSIRPKVLLLD 139 (230)
T ss_pred ecCcccCCCCCHHHHHHHHHHhcccCCCHHHHHHHHHHHHHHcCCHHHHcCChhhCCHHHHHHHHHHHHHHcCCCEEEEc
Confidence 3322222 234555443221 1122334457888999999 67888999999999999988 9999
Q ss_pred CCCCCCCHHHHHHHHH---Hhcc--cCcEEEEccCCCHHHHHHHHhccccccceEEEeecCCC
Q 018394 150 LPLTHVDEKLCYQILH---EYKI--HNAEVLFREDATVDDLIDVIEGNRKYMKCVYVYNKIDV 207 (356)
Q Consensus 150 Ep~~~LD~~~~~~il~---~l~~--~~~~i~~thd~~~~~~~~~i~~~~~~~p~i~v~NK~Dl 207 (356)
|||++||+.....+++ ++.. +.+++++||+...... .+..++++++..+
T Consensus 140 EPt~gLD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~---------~~d~v~~l~~G~i 193 (230)
T TIGR01184 140 EPFGALDALTRGNLQEELMQIWEEHRVTVLMVTHDVDEALL---------LSDRVVMLTNGPA 193 (230)
T ss_pred CCCcCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHH---------hcCEEEEEeCCcE
Confidence 9999999988655544 4432 4589999999754221 1355666665443
No 110
>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Probab=99.86 E-value=6.1e-21 Score=176.33 Aligned_cols=178 Identities=17% Similarity=0.152 Sum_probs=121.4
Q ss_pred CCCCeEEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCccccccccccccceEEEECCEeecccCcccc----ccccccC
Q 018394 8 AGEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGI----IEGASEG 83 (356)
Q Consensus 8 ~~~s~~v~~~~g~~v~LvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~~D~pGl----~~~~~~~ 83 (356)
++++|++.+ |++++|+|+||||||||+++|+|...+ ..|.+.++|.++...+.... .......
T Consensus 20 ~~vs~~i~~--Ge~~~i~G~nGsGKSTLl~~l~G~~~~-----------~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~ 86 (250)
T PRK11264 20 HGIDLEVKP--GEVVAIIGPSGSGKTTLLRCINLLEQP-----------EAGTIRVGDITIDTARSLSQQKGLIRQLRQH 86 (250)
T ss_pred ccceEEEcC--CCEEEEECCCCCCHHHHHHHHhcCCCC-----------CCeEEEECCEEccccccccchhhHHHHhhhh
Confidence 689999999 889999999999999999999999766 78999999988753221000 0011122
Q ss_pred cccccccccccc---chhHHHHHH---hcCChHHHHHHHHHHHHHccC--ccccccCcccccceecccee---------e
Q 018394 84 KGRGRQVIAVSK---SSDIVLMVL---DASKSEGHRQILTKELEAVGL--RLNKRPPQIYFKKKKTGGIS---------F 146 (356)
Q Consensus 84 ~~~~~~~~~~~~---~~d~i~~v~---d~~~~~~~~~~i~~~L~~~~i--~l~~~~~~lS~g~~qr~~ia---------l 146 (356)
.++..|....+. ..+.+.+.. .........+.+.+.++.+++ ..++.+.+||+||+||+.|+ +
T Consensus 87 i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~Gq~qrv~la~al~~~p~ll 166 (250)
T PRK11264 87 VGFVFQNFNLFPHRTVLENIIEGPVIVKGEPKEEATARARELLAKVGLAGKETSYPRRLSGGQQQRVAIARALAMRPEVI 166 (250)
T ss_pred EEEEecCcccCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCcchhhCChhhCChHHHHHHHHHHHHhcCCCEE
Confidence 344444333332 234443321 111122234557788999998 56888999999999999988 9
Q ss_pred eecCCCCCCCHHHHHHH---HHHhcc-cCcEEEEccCCCHHHHHHHHhccccccceEEEeecCCC
Q 018394 147 NSTLPLTHVDEKLCYQI---LHEYKI-HNAEVLFREDATVDDLIDVIEGNRKYMKCVYVYNKIDV 207 (356)
Q Consensus 147 ~~DEp~~~LD~~~~~~i---l~~l~~-~~~~i~~thd~~~~~~~~~i~~~~~~~p~i~v~NK~Dl 207 (356)
++||||++||+.....+ ++.+.. +.+++++||+...... .+..+++++...+
T Consensus 167 lLDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~~tH~~~~~~~---------~~d~i~~l~~G~i 222 (250)
T PRK11264 167 LFDEPTSALDPELVGEVLNTIRQLAQEKRTMVIVTHEMSFARD---------VADRAIFMDQGRI 222 (250)
T ss_pred EEeCCCccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHH---------hcCEEEEEECCEE
Confidence 99999999999885554 444443 4589999999754321 1356677765443
No 111
>COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.86 E-value=7.1e-21 Score=164.65 Aligned_cols=157 Identities=23% Similarity=0.255 Sum_probs=119.7
Q ss_pred CCCCeEEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCccccccccccccceEEEECCEeecccCccccccccccCcccc
Q 018394 8 AGEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRG 87 (356)
Q Consensus 8 ~~~s~~v~~~~g~~v~LvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~~D~pGl~~~~~~~~~~~ 87 (356)
.++|+++.. |+.++++||+|||||||||.++|...| ..|.+.++|.+|+ -|| ...+.+
T Consensus 22 e~vsL~ia~--ge~vv~lGpSGcGKTTLLnl~AGf~~P-----------~~G~i~l~~r~i~---gPg------aergvV 79 (259)
T COG4525 22 EDVSLTIAS--GELVVVLGPSGCGKTTLLNLIAGFVTP-----------SRGSIQLNGRRIE---GPG------AERGVV 79 (259)
T ss_pred hccceeecC--CCEEEEEcCCCccHHHHHHHHhcCcCc-----------ccceEEECCEecc---CCC------ccceeE
Confidence 589999999 889999999999999999999999877 8999999999875 243 123445
Q ss_pred ccccccccc---hhHHHHHHhcC--ChHHHHHHHHHHHHHccC--ccccccCcccccceecccee---------eeecCC
Q 018394 88 RQVIAVSKS---SDIVLMVLDAS--KSEGHRQILTKELEAVGL--RLNKRPPQIYFKKKKTGGIS---------FNSTLP 151 (356)
Q Consensus 88 ~~~~~~~~~---~d~i~~v~d~~--~~~~~~~~i~~~L~~~~i--~l~~~~~~lS~g~~qr~~ia---------l~~DEp 151 (356)
+|....++- .|++.+-+... .+....+.+.+.|..+|+ .-++++-+||+||+||+||| +++|||
T Consensus 80 FQ~~~LlPWl~~~dNvafgL~l~Gi~k~~R~~~a~q~l~~VgL~~~~~~~i~qLSGGmrQRvGiARALa~eP~~LlLDEP 159 (259)
T COG4525 80 FQNEALLPWLNVIDNVAFGLQLRGIEKAQRREIAHQMLALVGLEGAEHKYIWQLSGGMRQRVGIARALAVEPQLLLLDEP 159 (259)
T ss_pred eccCccchhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhCcccccccceEeecchHHHHHHHHHHhhcCcceEeecCc
Confidence 565555544 44555544443 344456677888999999 56788999999999999998 999999
Q ss_pred CCCCCHHH---HHHHHHHh-c-ccCcEEEEccCCCHHHHH
Q 018394 152 LTHVDEKL---CYQILHEY-K-IHNAEVLFREDATVDDLI 186 (356)
Q Consensus 152 ~~~LD~~~---~~~il~~l-~-~~~~~i~~thd~~~~~~~ 186 (356)
+..||.-+ ++++|-.+ + .+..++++|||+..+-+.
T Consensus 160 fgAlDa~tRe~mQelLldlw~~tgk~~lliTH~ieEAlfl 199 (259)
T COG4525 160 FGALDALTREQMQELLLDLWQETGKQVLLITHDIEEALFL 199 (259)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHhCCeEEEEeccHHHHHhh
Confidence 99999765 34443333 3 356899999998766543
No 112
>PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional
Probab=99.86 E-value=3.6e-21 Score=185.01 Aligned_cols=183 Identities=11% Similarity=0.100 Sum_probs=123.7
Q ss_pred CCCCeEEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCccccccccccccceEEEECCEeecccCccccccccccCcccc
Q 018394 8 AGEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRG 87 (356)
Q Consensus 8 ~~~s~~v~~~~g~~v~LvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~~D~pGl~~~~~~~~~~~ 87 (356)
.++||+|.+ |++++|+|+||||||||+++|+|...+- ..+..|.|.++|.++.-++...+.......+++.
T Consensus 24 ~~vsl~i~~--Ge~~~ivG~sGsGKSTLl~~i~Gl~~~~-------~~~~~G~i~~~g~~i~~~~~~~~~~~~~~~i~~v 94 (330)
T PRK15093 24 DRVSMTLTE--GEIRGLVGESGSGKSLIAKAICGVTKDN-------WRVTADRMRFDDIDLLRLSPRERRKLVGHNVSMI 94 (330)
T ss_pred eeeEEEECC--CCEEEEECCCCCCHHHHHHHHHccCCCC-------CCCcceEEEECCEECCcCCHHHHHHHhCCCEEEE
Confidence 588999999 8899999999999999999999997530 1236899999999875443222211111234555
Q ss_pred cccccc--c---cchhHHHHHHhcC--------ChHHHHHHHHHHHHHccCc-----cccccCcccccceecccee----
Q 018394 88 RQVIAV--S---KSSDIVLMVLDAS--------KSEGHRQILTKELEAVGLR-----LNKRPPQIYFKKKKTGGIS---- 145 (356)
Q Consensus 88 ~~~~~~--~---~~~d~i~~v~d~~--------~~~~~~~~i~~~L~~~~i~-----l~~~~~~lS~g~~qr~~ia---- 145 (356)
+|.... . ...+.+...+... ......+.+.++|+.+++. +++++.+||+||+||++||
T Consensus 95 ~Q~~~~~l~p~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~~~~~p~~LSgG~~QRv~iArAL~ 174 (330)
T PRK15093 95 FQEPQSCLDPSERVGRQLMQNIPGWTYKGRWWQRFGWRKRRAIELLHRVGIKDHKDAMRSFPYELTEGECQKVMIAIALA 174 (330)
T ss_pred ecCcchhcCccccHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHCCCCChHHHHhCCchhCCHHHHHHHHHHHHHH
Confidence 554321 1 1122232221110 1122345678899999982 4788999999999999998
Q ss_pred -----eeecCCCCCCCHHHHHHHHH---Hhcc--cCcEEEEccCCCHHHHHHHHhccccccceEEEeecCCCC
Q 018394 146 -----FNSTLPLTHVDEKLCYQILH---EYKI--HNAEVLFREDATVDDLIDVIEGNRKYMKCVYVYNKIDVI 208 (356)
Q Consensus 146 -----l~~DEp~~~LD~~~~~~il~---~l~~--~~~~i~~thd~~~~~~~~~i~~~~~~~p~i~v~NK~Dl~ 208 (356)
+++||||++||.....++++ ++.. +.++|++|||...... .+..+++++..-+.
T Consensus 175 ~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~g~tii~itHdl~~v~~---------~~dri~vm~~G~iv 238 (330)
T PRK15093 175 NQPRLLIADEPTNAMEPTTQAQIFRLLTRLNQNNNTTILLISHDLQMLSQ---------WADKINVLYCGQTV 238 (330)
T ss_pred CCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHH---------hCCEEEEEECCEEE
Confidence 99999999999988555544 4443 4599999999765432 23667777766544
No 113
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=99.86 E-value=5.1e-21 Score=177.56 Aligned_cols=154 Identities=19% Similarity=0.159 Sum_probs=111.7
Q ss_pred CCCCeEEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCccccccccccccceEEEECCEeecccCccccccccccCcccc
Q 018394 8 AGEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRG 87 (356)
Q Consensus 8 ~~~s~~v~~~~g~~v~LvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~~D~pGl~~~~~~~~~~~ 87 (356)
.++||++.+ |++++|+|+||||||||+++|+|...+ ..|.+.++|.++.... ...++.
T Consensus 18 ~~vs~~i~~--Ge~~~i~G~nGsGKSTLl~~l~Gl~~p-----------~~G~i~~~g~~~~~~~---------~~~~~v 75 (255)
T PRK11248 18 EDINLTLES--GELLVVLGPSGCGKTTLLNLIAGFVPY-----------QHGSITLDGKPVEGPG---------AERGVV 75 (255)
T ss_pred eeeeEEECC--CCEEEEECCCCCCHHHHHHHHhCCCCC-----------CCcEEEECCEECCCCC---------CcEEEE
Confidence 689999999 889999999999999999999999866 7899999998764211 012222
Q ss_pred cccccccc---chhHHHHHHhc--CChHHHHHHHHHHHHHccC--ccccccCcccccceecccee---------eeecCC
Q 018394 88 RQVIAVSK---SSDIVLMVLDA--SKSEGHRQILTKELEAVGL--RLNKRPPQIYFKKKKTGGIS---------FNSTLP 151 (356)
Q Consensus 88 ~~~~~~~~---~~d~i~~v~d~--~~~~~~~~~i~~~L~~~~i--~l~~~~~~lS~g~~qr~~ia---------l~~DEp 151 (356)
.|....+. ..+.+.+.... .......+.+.++|+.+++ .+++++..||+||+||+.++ +++|||
T Consensus 76 ~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qrl~laral~~~p~lllLDEP 155 (255)
T PRK11248 76 FQNEGLLPWRNVQDNVAFGLQLAGVEKMQRLEIAHQMLKKVGLEGAEKRYIWQLSGGQRQRVGIARALAANPQLLLLDEP 155 (255)
T ss_pred eCCCccCCCCcHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCChhHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCC
Confidence 33322222 23444332221 1222234567889999999 57888999999999999988 999999
Q ss_pred CCCCCHHHHHHH---HHHhc-c-cCcEEEEccCCCHH
Q 018394 152 LTHVDEKLCYQI---LHEYK-I-HNAEVLFREDATVD 183 (356)
Q Consensus 152 ~~~LD~~~~~~i---l~~l~-~-~~~~i~~thd~~~~ 183 (356)
|++||+.....+ |..+. . +.++|++||+.+..
T Consensus 156 t~~LD~~~~~~l~~~L~~~~~~~g~tviivsH~~~~~ 192 (255)
T PRK11248 156 FGALDAFTREQMQTLLLKLWQETGKQVLLITHDIEEA 192 (255)
T ss_pred CccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHH
Confidence 999999985554 44442 2 45899999997643
No 114
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=99.86 E-value=3.6e-21 Score=173.06 Aligned_cols=155 Identities=14% Similarity=0.123 Sum_probs=112.1
Q ss_pred CCCCeEEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCccccccccccccceEEEECCEeecccCccccccccccCcccc
Q 018394 8 AGEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRG 87 (356)
Q Consensus 8 ~~~s~~v~~~~g~~v~LvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~~D~pGl~~~~~~~~~~~ 87 (356)
.+++|++.+ |++++|+|+||||||||+++|+|...+ .+|.+.++|.++.-. . ......++.
T Consensus 17 ~~~~~~i~~--G~~~~i~G~nGsGKSTLl~~l~Gl~~~-----------~~G~i~~~g~~~~~~--~----~~~~~i~~~ 77 (208)
T cd03268 17 DDISLHVKK--GEIYGFLGPNGAGKTTTMKIILGLIKP-----------DSGEITFDGKSYQKN--I----EALRRIGAL 77 (208)
T ss_pred eeeEEEEcC--CcEEEEECCCCCCHHHHHHHHhCCcCC-----------CceEEEECCCcccch--H----HHHhhEEEe
Confidence 588999999 889999999999999999999999866 799999999865321 1 011123333
Q ss_pred ccccccc---cchhHHHHHHhcCChHHHHHHHHHHHHHccC--ccccccCcccccceecccee---------eeecCCCC
Q 018394 88 RQVIAVS---KSSDIVLMVLDASKSEGHRQILTKELEAVGL--RLNKRPPQIYFKKKKTGGIS---------FNSTLPLT 153 (356)
Q Consensus 88 ~~~~~~~---~~~d~i~~v~d~~~~~~~~~~i~~~L~~~~i--~l~~~~~~lS~g~~qr~~ia---------l~~DEp~~ 153 (356)
.|....+ ...+.+.+....... ..+.+.+.|+.+++ .+++.+..||+||+||++++ +++||||+
T Consensus 78 ~q~~~~~~~~tv~e~l~~~~~~~~~--~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEPt~ 155 (208)
T cd03268 78 IEAPGFYPNLTARENLRLLARLLGI--RKKRIDEVLDVVGLKDSAKKKVKGFSLGMKQRLGIALALLGNPDLLILDEPTN 155 (208)
T ss_pred cCCCccCccCcHHHHHHHHHHhcCC--cHHHHHHHHHHcCCHHHHhhhHhhCCHHHHHHHHHHHHHhcCCCEEEECCCcc
Confidence 3332222 224444333322211 23457788899999 67888999999999999988 99999999
Q ss_pred CCCHHHHHHH---HHHhcc-cCcEEEEccCCCHH
Q 018394 154 HVDEKLCYQI---LHEYKI-HNAEVLFREDATVD 183 (356)
Q Consensus 154 ~LD~~~~~~i---l~~l~~-~~~~i~~thd~~~~ 183 (356)
+||+.....+ +.++.. +.+++++||+....
T Consensus 156 ~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~~~ 189 (208)
T cd03268 156 GLDPDGIKELRELILSLRDQGITVLISSHLLSEI 189 (208)
T ss_pred cCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHH
Confidence 9999886554 444443 45899999997644
No 115
>COG4604 CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.86 E-value=1.4e-21 Score=169.22 Aligned_cols=177 Identities=17% Similarity=0.191 Sum_probs=127.2
Q ss_pred CCCCeEEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCccccccccccccceEEEECCEeecccCccccccccccCcccc
Q 018394 8 AGEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRG 87 (356)
Q Consensus 8 ~~~s~~v~~~~g~~v~LvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~~D~pGl~~~~~~~~~~~ 87 (356)
.++|+++++ |.+.+|+|||||||||||.+++++... .+|.+.++|.++.-.++..+....+-- ...
T Consensus 18 ~~isl~i~~--g~iTs~IGPNGAGKSTLLS~~sRL~~~-----------d~G~i~i~g~~~~~~~s~~LAk~lSIL-kQ~ 83 (252)
T COG4604 18 DDVSLDIPK--GGITSIIGPNGAGKSTLLSMMSRLLKK-----------DSGEITIDGLELTSTPSKELAKKLSIL-KQE 83 (252)
T ss_pred ccceeeecC--CceeEEECCCCccHHHHHHHHHHhccc-----------cCceEEEeeeecccCChHHHHHHHHHH-Hhh
Confidence 589999999 669999999999999999999999877 899999999998765544332111000 000
Q ss_pred ccccccccchhHHHHHHhc----CChHHHHHHHHHHHHHccC--ccccccCcccccceecccee---------eeecCCC
Q 018394 88 RQVIAVSKSSDIVLMVLDA----SKSEGHRQILTKELEAVGL--RLNKRPPQIYFKKKKTGGIS---------FNSTLPL 152 (356)
Q Consensus 88 ~~~~~~~~~~d~i~~v~d~----~~~~~~~~~i~~~L~~~~i--~l~~~~~~lS~g~~qr~~ia---------l~~DEp~ 152 (356)
+.+..-+...|++-|..-. .-..++...+.+.++.+++ .-+++..+|||||+||.-|| +++|||+
T Consensus 84 N~i~~rlTV~dLv~FGRfPYSqGRlt~eD~~~I~~aieyl~L~~l~dryLd~LSGGQrQRAfIAMVlaQdTdyvlLDEPL 163 (252)
T COG4604 84 NHINSRLTVRDLVGFGRFPYSQGRLTKEDRRIINEAIEYLHLEDLSDRYLDELSGGQRQRAFIAMVLAQDTDYVLLDEPL 163 (252)
T ss_pred chhhheeEHHHHhhcCCCcccCCCCchHHHHHHHHHHHHhcccchHHHhHHhcccchhhhhhhheeeeccCcEEEecCcc
Confidence 1111112223444332211 1234567788999999998 67888999999999999888 8999999
Q ss_pred CCCCHHHHHHHHHHhc-----ccCcEEEEccCCCHHHHHHHHhccccccceEEEeecCCC
Q 018394 153 THVDEKLCYQILHEYK-----IHNAEVLFREDATVDDLIDVIEGNRKYMKCVYVYNKIDV 207 (356)
Q Consensus 153 ~~LD~~~~~~il~~l~-----~~~~~i~~thd~~~~~~~~~i~~~~~~~p~i~v~NK~Dl 207 (356)
++||.+...++++.++ .++|++++-||.+++.. |.+.|+++-..-+
T Consensus 164 NNLDmkHsv~iMk~Lrrla~el~KtiviVlHDINfAS~---------YsD~IVAlK~G~v 214 (252)
T COG4604 164 NNLDMKHSVQIMKILRRLADELGKTIVVVLHDINFASC---------YSDHIVALKNGKV 214 (252)
T ss_pred cccchHHHHHHHHHHHHHHHHhCCeEEEEEecccHHHh---------hhhheeeecCCEE
Confidence 9999998666666554 46799999999987654 4466666655544
No 116
>PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.85 E-value=4.7e-21 Score=180.88 Aligned_cols=177 Identities=23% Similarity=0.189 Sum_probs=122.5
Q ss_pred CCCCeEEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCccccccccccccceEEEECCEeecccCc-cccccccccCccc
Q 018394 8 AGEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDL-PGIIEGASEGKGR 86 (356)
Q Consensus 8 ~~~s~~v~~~~g~~v~LvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~~D~-pGl~~~~~~~~~~ 86 (356)
.++||++.+ |++++|+|+||||||||+++|+|...+ ..|.+.++|.++...+. .... .....+++
T Consensus 23 ~~vsl~i~~--Ge~v~i~G~nGsGKSTLl~~l~Gl~~p-----------~~G~i~~~g~~i~~~~~~~~~~-~~~~~ig~ 88 (288)
T PRK13643 23 FDIDLEVKK--GSYTALIGHTGSGKSTLLQHLNGLLQP-----------TEGKVTVGDIVVSSTSKQKEIK-PVRKKVGV 88 (288)
T ss_pred eeeEEEEcC--CCEEEEECCCCChHHHHHHHHhcCCCC-----------CCcEEEECCEECccccccccHH-HHHhhEEE
Confidence 689999999 889999999999999999999999876 89999999998742111 1110 11223444
Q ss_pred ccccc--ccc--cchhHHHHHHhcC--ChHHHHHHHHHHHHHccC---ccccccCcccccceecccee---------eee
Q 018394 87 GRQVI--AVS--KSSDIVLMVLDAS--KSEGHRQILTKELEAVGL---RLNKRPPQIYFKKKKTGGIS---------FNS 148 (356)
Q Consensus 87 ~~~~~--~~~--~~~d~i~~v~d~~--~~~~~~~~i~~~L~~~~i---~l~~~~~~lS~g~~qr~~ia---------l~~ 148 (356)
..|.. ..+ ...+.+.+..... ...+....+.+.|+.+++ ..++.+..||+||+||++|| +++
T Consensus 89 v~q~~~~~l~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSgGqkqrvaiA~aL~~~p~illL 168 (288)
T PRK13643 89 VFQFPESQLFEETVLKDVAFGPQNFGIPKEKAEKIAAEKLEMVGLADEFWEKSPFELSGGQMRRVAIAGILAMEPEVLVL 168 (288)
T ss_pred EecCcchhcccchHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCChhhccCCcccCCHHHHHHHHHHHHHHhCCCEEEE
Confidence 44432 111 2234443322211 122334567888999998 35788999999999999998 999
Q ss_pred cCCCCCCCHHHHHHHH---HHhcc-cCcEEEEccCCCHHHHHHHHhccccccceEEEeecCCC
Q 018394 149 TLPLTHVDEKLCYQIL---HEYKI-HNAEVLFREDATVDDLIDVIEGNRKYMKCVYVYNKIDV 207 (356)
Q Consensus 149 DEp~~~LD~~~~~~il---~~l~~-~~~~i~~thd~~~~~~~~~i~~~~~~~p~i~v~NK~Dl 207 (356)
||||++||+.....++ +.+.. +.+++++|||.+.... .+..+++++..-+
T Consensus 169 DEPt~gLD~~~~~~l~~~l~~l~~~g~til~vtHd~~~~~~---------~~dri~~l~~G~i 222 (288)
T PRK13643 169 DEPTAGLDPKARIEMMQLFESIHQSGQTVVLVTHLMDDVAD---------YADYVYLLEKGHI 222 (288)
T ss_pred ECCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHH---------hCCEEEEEECCEE
Confidence 9999999998855544 44443 4599999999754321 2366777776544
No 117
>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.85 E-value=3.1e-21 Score=181.31 Aligned_cols=173 Identities=18% Similarity=0.169 Sum_probs=123.8
Q ss_pred CCCCeEEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCccccccccccccceEEEECCEeecccCccccccccccCcccc
Q 018394 8 AGEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRG 87 (356)
Q Consensus 8 ~~~s~~v~~~~g~~v~LvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~~D~pGl~~~~~~~~~~~ 87 (356)
.++||++.+ |++++|+|+|||||||||++|+|...| ..|.+.++|.++.-...+.+ ...+++.
T Consensus 24 ~~vsl~i~~--Ge~~~i~G~nGsGKSTLl~~l~Gl~~p-----------~~G~i~~~g~~i~~~~~~~~----~~~i~~v 86 (279)
T PRK13650 24 NDVSFHVKQ--GEWLSIIGHNGSGKSTTVRLIDGLLEA-----------ESGQIIIDGDLLTEENVWDI----RHKIGMV 86 (279)
T ss_pred eeeEEEEeC--CCEEEEECCCCCCHHHHHHHHhcCCCC-----------CCcEEEECCEECCcCcHHHH----HhhceEE
Confidence 589999999 889999999999999999999999876 89999999988753221111 1234454
Q ss_pred ccccc-cc---cchhHHHHHHhc--CChHHHHHHHHHHHHHccC--ccccccCcccccceecccee---------eeecC
Q 018394 88 RQVIA-VS---KSSDIVLMVLDA--SKSEGHRQILTKELEAVGL--RLNKRPPQIYFKKKKTGGIS---------FNSTL 150 (356)
Q Consensus 88 ~~~~~-~~---~~~d~i~~v~d~--~~~~~~~~~i~~~L~~~~i--~l~~~~~~lS~g~~qr~~ia---------l~~DE 150 (356)
.|... .+ ...+.+.+.... .......+.+.++|+.+++ .+++.+..||+||+||++|| +++||
T Consensus 87 ~q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~qrv~lAral~~~p~lLlLDE 166 (279)
T PRK13650 87 FQNPDNQFVGATVEDDVAFGLENKGIPHEEMKERVNEALELVGMQDFKEREPARLSGGQKQRVAIAGAVAMRPKIIILDE 166 (279)
T ss_pred EcChHHhcccccHHHHHHhhHHhCCCCHHHHHHHHHHHHHHCCCHhHhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEEC
Confidence 55321 11 223444333221 2222334567889999999 68899999999999999998 99999
Q ss_pred CCCCCCHHHHHHHHH---Hhcc--cCcEEEEccCCCHHHHHHHHhccccccceEEEeecCCC
Q 018394 151 PLTHVDEKLCYQILH---EYKI--HNAEVLFREDATVDDLIDVIEGNRKYMKCVYVYNKIDV 207 (356)
Q Consensus 151 p~~~LD~~~~~~il~---~l~~--~~~~i~~thd~~~~~~~~~i~~~~~~~p~i~v~NK~Dl 207 (356)
||++||+.....+++ .+.. +.+++++||+.+.... +..+++++..-+
T Consensus 167 Pt~~LD~~~~~~l~~~l~~l~~~~g~tilivtH~~~~~~~----------~dri~~l~~G~i 218 (279)
T PRK13650 167 ATSMLDPEGRLELIKTIKGIRDDYQMTVISITHDLDEVAL----------SDRVLVMKNGQV 218 (279)
T ss_pred CcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHh----------CCEEEEEECCEE
Confidence 999999998665544 4432 4599999999754322 356677765543
No 118
>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional
Probab=99.85 E-value=4.9e-21 Score=179.07 Aligned_cols=161 Identities=19% Similarity=0.168 Sum_probs=114.3
Q ss_pred CCCCeEEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCccccccccccccceEEEECCEeecccCccccccccccCcccc
Q 018394 8 AGEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRG 87 (356)
Q Consensus 8 ~~~s~~v~~~~g~~v~LvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~~D~pGl~~~~~~~~~~~ 87 (356)
.++||++.+ |++++|+|+|||||||||++|+|...| ..|.+.++|.++.-.+...+. .....+++.
T Consensus 24 ~~vsl~i~~--Ge~~~i~G~nGsGKSTLl~~l~Gl~~p-----------~~G~i~~~g~~i~~~~~~~~~-~~~~~i~~v 89 (269)
T PRK11831 24 DNISLTVPR--GKITAIMGPSGIGKTTLLRLIGGQIAP-----------DHGEILFDGENIPAMSRSRLY-TVRKRMSML 89 (269)
T ss_pred eeeEEEEcC--CCEEEEECCCCCCHHHHHHHHhCCCCC-----------CCceEEECCEEccccChhhHH-HHhhcEEEE
Confidence 578999999 889999999999999999999999876 789999999876533221110 011123333
Q ss_pred cccccccc---chhHHHHHHhcC---ChHHHHHHHHHHHHHccC--ccccccCcccccceecccee---------eeecC
Q 018394 88 RQVIAVSK---SSDIVLMVLDAS---KSEGHRQILTKELEAVGL--RLNKRPPQIYFKKKKTGGIS---------FNSTL 150 (356)
Q Consensus 88 ~~~~~~~~---~~d~i~~v~d~~---~~~~~~~~i~~~L~~~~i--~l~~~~~~lS~g~~qr~~ia---------l~~DE 150 (356)
.|....+. ..+.+.+..... ........+.+.|+.+++ .+++.+..||+||+||+.|| +++||
T Consensus 90 ~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qrv~laral~~~p~lllLDE 169 (269)
T PRK11831 90 FQSGALFTDMNVFDNVAYPLREHTQLPAPLLHSTVMMKLEAVGLRGAAKLMPSELSGGMARRAALARAIALEPDLIMFDE 169 (269)
T ss_pred ecccccCCCCCHHHHHHHHHHHccCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcC
Confidence 44333332 245544432211 122233456778999999 67888999999999999998 99999
Q ss_pred CCCCCCHHHHHHH---HHHhcc--cCcEEEEccCCCH
Q 018394 151 PLTHVDEKLCYQI---LHEYKI--HNAEVLFREDATV 182 (356)
Q Consensus 151 p~~~LD~~~~~~i---l~~l~~--~~~~i~~thd~~~ 182 (356)
||++||+.....+ ++.+.. +.++|++||+...
T Consensus 170 Pt~~LD~~~~~~l~~~l~~~~~~~g~tiiivsH~~~~ 206 (269)
T PRK11831 170 PFVGQDPITMGVLVKLISELNSALGVTCVVVSHDVPE 206 (269)
T ss_pred CCccCCHHHHHHHHHHHHHHHHhcCcEEEEEecCHHH
Confidence 9999999986544 445432 4589999999653
No 119
>TIGR00436 era GTP-binding protein Era. Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein.
Probab=99.85 E-value=1.8e-21 Score=182.02 Aligned_cols=155 Identities=28% Similarity=0.279 Sum_probs=107.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC-CCccccccccccccceEEEECCEeecccCccccccccccC-ccccccccccccchh
Q 018394 21 RVALIGFPSVGKSTLLTLLTGTH-SEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEG-KGRGRQVIAVSKSSD 98 (356)
Q Consensus 21 ~v~LvG~~gaGKSTLln~L~g~~-~~vs~~p~TT~~~~~G~i~~~g~~i~~~D~pGl~~~~~~~-~~~~~~~~~~~~~~d 98 (356)
+|+|+|+||||||||+|+|+|.. +.++++|+||+++..|....++.++.++||||+....... ..+.......+..+|
T Consensus 2 ~V~liG~pnvGKSTLln~L~~~~~~~vs~~~~TTr~~i~~i~~~~~~qii~vDTPG~~~~~~~l~~~~~~~~~~~l~~aD 81 (270)
T TIGR00436 2 FVAILGRPNVGKSTLLNQLHGQKISITSPKAQTTRNRISGIHTTGASQIIFIDTPGFHEKKHSLNRLMMKEARSAIGGVD 81 (270)
T ss_pred EEEEECCCCCCHHHHHHHHhCCcEeecCCCCCcccCcEEEEEEcCCcEEEEEECcCCCCCcchHHHHHHHHHHHHHhhCC
Confidence 79999999999999999999987 5689999999999999888888889999999986431110 001112223345667
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHHccCccccccCcccccceeccceeeeecCCCCCCCHHHHHHHHHHhcccCcEEEEcc
Q 018394 99 IVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNAEVLFRE 178 (356)
Q Consensus 99 ~i~~v~d~~~~~~~~~~i~~~L~~~~i~l~~~~~~lS~g~~qr~~ial~~DEp~~~LD~~~~~~il~~l~~~~~~i~~th 178 (356)
++++++|++......+. ++..
T Consensus 82 vvl~VvD~~~~~~~~~~-----------------------------------------------i~~~------------ 102 (270)
T TIGR00436 82 LILFVVDSDQWNGDGEF-----------------------------------------------VLTK------------ 102 (270)
T ss_pred EEEEEEECCCCCchHHH-----------------------------------------------HHHH------------
Confidence 77676666542211110 1110
Q ss_pred CCCHHHHHHHHhccccccceEEEeecCCCCChhhHH----HHh---cCCCEEEeccccccchHHHHHHHHHHhCc
Q 018394 179 DATVDDLIDVIEGNRKYMKCVYVYNKIDVIGIDDVD----KLA---RQPNSVVISCNLKLNLDRLLARMWEEMGL 246 (356)
Q Consensus 179 d~~~~~~~~~i~~~~~~~p~i~v~NK~Dl~~~~~~~----~l~---~~~~~i~iSa~~~~~l~~L~~~i~~~l~~ 246 (356)
+. ...+|+++|+||+|+...+... .+. .+.+++++||++|.|+++|.+.+.+.+..
T Consensus 103 ----------l~--~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~v~~iSA~~g~gi~~L~~~l~~~l~~ 165 (270)
T TIGR00436 103 ----------LQ--NLKRPVVLTRNKLDNKFKDKLLPLIDKYAILEDFKDIVPISALTGDNTSFLAAFIEVHLPE 165 (270)
T ss_pred ----------HH--hcCCCEEEEEECeeCCCHHHHHHHHHHHHhhcCCCceEEEecCCCCCHHHHHHHHHHhCCC
Confidence 10 1135999999999997544321 221 22368999999999999999999988743
No 120
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=99.85 E-value=4.1e-21 Score=174.26 Aligned_cols=159 Identities=20% Similarity=0.205 Sum_probs=111.0
Q ss_pred CCCCeEEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCccccccccccccceEEEECCEeecccCccccccccccCcccc
Q 018394 8 AGEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRG 87 (356)
Q Consensus 8 ~~~s~~v~~~~g~~v~LvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~~D~pGl~~~~~~~~~~~ 87 (356)
.++||++.+ |++++|+|+||||||||+++|+|...+ ..|.+.++|.++.-.+..-. ....+++.
T Consensus 17 ~~vs~~i~~--Ge~~~i~G~nGsGKSTLl~~l~Gl~~~-----------~~G~i~~~g~~~~~~~~~~~---~~~~i~~~ 80 (222)
T cd03224 17 FGVSLTVPE--GEIVALLGRNGAGKTTLLKTIMGLLPP-----------RSGSIRFDGRDITGLPPHER---ARAGIGYV 80 (222)
T ss_pred eeeeEEEcC--CeEEEEECCCCCCHHHHHHHHhCCCCC-----------CCceEEECCEEcCCCCHHHH---HhcCeEEe
Confidence 588999999 889999999999999999999999876 78999999987643322111 11234444
Q ss_pred ccccccccc---hhHHHHHHhcCChHHHHHHHHHHHHHc-cC--ccccccCcccccceecccee---------eeecCCC
Q 018394 88 RQVIAVSKS---SDIVLMVLDASKSEGHRQILTKELEAV-GL--RLNKRPPQIYFKKKKTGGIS---------FNSTLPL 152 (356)
Q Consensus 88 ~~~~~~~~~---~d~i~~v~d~~~~~~~~~~i~~~L~~~-~i--~l~~~~~~lS~g~~qr~~ia---------l~~DEp~ 152 (356)
.|....+.. .+.+.+.............+.+.++.+ ++ .+++.+..||+|++||+.++ +++||||
T Consensus 81 ~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt 160 (222)
T cd03224 81 PEGRRIFPELTVEENLLLGAYARRRAKRKARLERVYELFPRLKERRKQLAGTLSGGEQQMLAIARALMSRPKLLLLDEPS 160 (222)
T ss_pred ccccccCCCCcHHHHHHHHhhhcCchhHHHHHHHHHHHHHhhhhhhhCchhhCCHHHHHHHHHHHHHhcCCCEEEECCCc
Confidence 444333332 333333222111112233455666666 35 57888999999999999988 9999999
Q ss_pred CCCCHHHHHHHHH---Hhcc-cCcEEEEccCCCH
Q 018394 153 THVDEKLCYQILH---EYKI-HNAEVLFREDATV 182 (356)
Q Consensus 153 ~~LD~~~~~~il~---~l~~-~~~~i~~thd~~~ 182 (356)
++||+.....+++ ++.. +.+++++||+...
T Consensus 161 ~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~ 194 (222)
T cd03224 161 EGLAPKIVEEIFEAIRELRDEGVTILLVEQNARF 194 (222)
T ss_pred ccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHH
Confidence 9999988555544 4432 4599999999754
No 121
>PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.85 E-value=4.4e-21 Score=181.22 Aligned_cols=175 Identities=19% Similarity=0.144 Sum_probs=121.2
Q ss_pred CCCCeEEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCccccccccccccceEEEECCEeeccc-CccccccccccCccc
Q 018394 8 AGEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLL-DLPGIIEGASEGKGR 86 (356)
Q Consensus 8 ~~~s~~v~~~~g~~v~LvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~~-D~pGl~~~~~~~~~~ 86 (356)
+++||++.+ |++++|+|+||||||||+++|+|...+ ..|.|.++|.++... +..... .....+++
T Consensus 24 ~~vsl~i~~--Ge~~~i~G~nGsGKSTLl~~l~Gl~~p-----------~~G~i~~~g~~i~~~~~~~~~~-~~~~~ig~ 89 (290)
T PRK13634 24 YDVNVSIPS--GSYVAIIGHTGSGKSTLLQHLNGLLQP-----------TSGTVTIGERVITAGKKNKKLK-PLRKKVGI 89 (290)
T ss_pred eeEEEEEcC--CCEEEEECCCCCcHHHHHHHHhcCCCC-----------CCcEEEECCEECccccccchHH-HHHhhEEE
Confidence 689999999 889999999999999999999999876 789999999987421 111110 11223444
Q ss_pred ccccc--ccc--cchhHHHHHHhc--CChHHHHHHHHHHHHHccC---ccccccCcccccceecccee---------eee
Q 018394 87 GRQVI--AVS--KSSDIVLMVLDA--SKSEGHRQILTKELEAVGL---RLNKRPPQIYFKKKKTGGIS---------FNS 148 (356)
Q Consensus 87 ~~~~~--~~~--~~~d~i~~v~d~--~~~~~~~~~i~~~L~~~~i---~l~~~~~~lS~g~~qr~~ia---------l~~ 148 (356)
.+|.. ..+ ...+.+.+.... .......+.+.+.|+.+++ ..++++..||+||+||++|| +++
T Consensus 90 v~q~~~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGq~qrv~lAraL~~~P~llll 169 (290)
T PRK13634 90 VFQFPEHQLFEETVEKDICFGPMNFGVSEEDAKQKAREMIELVGLPEELLARSPFELSGGQMRRVAIAGVLAMEPEVLVL 169 (290)
T ss_pred EeeCchhhhhhhhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCChhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEE
Confidence 45432 111 223333332211 1222234567888999998 35888999999999999998 999
Q ss_pred cCCCCCCCHHHHHHH---HHHhcc--cCcEEEEccCCCHHHHHHHHhccccccceEEEeecC
Q 018394 149 TLPLTHVDEKLCYQI---LHEYKI--HNAEVLFREDATVDDLIDVIEGNRKYMKCVYVYNKI 205 (356)
Q Consensus 149 DEp~~~LD~~~~~~i---l~~l~~--~~~~i~~thd~~~~~~~~~i~~~~~~~p~i~v~NK~ 205 (356)
||||++||+.....+ |+.+.. +.++|++|||...... .+..+++++..
T Consensus 170 DEPt~~LD~~~~~~l~~~L~~l~~~~g~tviiitHd~~~~~~---------~~drv~~l~~G 222 (290)
T PRK13634 170 DEPTAGLDPKGRKEMMEMFYKLHKEKGLTTVLVTHSMEDAAR---------YADQIVVMHKG 222 (290)
T ss_pred ECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHH---------hCCEEEEEECC
Confidence 999999999986555 444433 4599999999764321 13566676654
No 122
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=99.85 E-value=6.8e-21 Score=174.63 Aligned_cols=159 Identities=17% Similarity=0.101 Sum_probs=113.3
Q ss_pred CCCCeEEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCccccccccccccceEEEECCEeecccCccccccccccCcccc
Q 018394 8 AGEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRG 87 (356)
Q Consensus 8 ~~~s~~v~~~~g~~v~LvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~~D~pGl~~~~~~~~~~~ 87 (356)
.++||++.+ |++++|+|+||||||||+++|+|...| ..|.+.++|.++...+.. . ....++.
T Consensus 18 ~~vs~~i~~--Ge~~~i~G~nGsGKSTLl~~l~G~~~p-----------~~G~i~~~g~~i~~~~~~-~----~~~i~~~ 79 (236)
T TIGR03864 18 DDVSFTVRP--GEFVALLGPNGAGKSTLFSLLTRLYVA-----------QEGQISVAGHDLRRAPRA-A----LARLGVV 79 (236)
T ss_pred eeeEEEEcC--CCEEEEECCCCCCHHHHHHHHhCCcCC-----------CceEEEECCEEcccCChh-h----hhhEEEe
Confidence 588999999 889999999999999999999999876 799999999876432211 0 1123333
Q ss_pred ccccccc---cchhHHHHHHhcC--ChHHHHHHHHHHHHHccC--ccccccCcccccceecccee---------eeecCC
Q 018394 88 RQVIAVS---KSSDIVLMVLDAS--KSEGHRQILTKELEAVGL--RLNKRPPQIYFKKKKTGGIS---------FNSTLP 151 (356)
Q Consensus 88 ~~~~~~~---~~~d~i~~v~d~~--~~~~~~~~i~~~L~~~~i--~l~~~~~~lS~g~~qr~~ia---------l~~DEp 151 (356)
.|....+ ...+.+.+..... ......+.+.+.++.+++ .+++.+..||+||+||++++ +++|||
T Consensus 80 ~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEP 159 (236)
T TIGR03864 80 FQQPTLDLDLSVRQNLRYHAALHGLSRAEARERIAALLARLGLAERADDKVRELNGGHRRRVEIARALLHRPALLLLDEP 159 (236)
T ss_pred CCCCCCcccCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCC
Confidence 3332221 2234443322211 122234457788999998 67889999999999999988 999999
Q ss_pred CCCCCHHHHHHH---HHHhcc--cCcEEEEccCCCHHH
Q 018394 152 LTHVDEKLCYQI---LHEYKI--HNAEVLFREDATVDD 184 (356)
Q Consensus 152 ~~~LD~~~~~~i---l~~l~~--~~~~i~~thd~~~~~ 184 (356)
|++||+.....+ |..+.. +.+++++||+.+...
T Consensus 160 ~~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~ 197 (236)
T TIGR03864 160 TVGLDPASRAAIVAHVRALCRDQGLSVLWATHLVDEIE 197 (236)
T ss_pred ccCCCHHHHHHHHHHHHHHHHhCCCEEEEEecChhhHh
Confidence 999999885554 444432 458999999986543
No 123
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.85 E-value=4.9e-21 Score=172.40 Aligned_cols=154 Identities=18% Similarity=0.192 Sum_probs=110.9
Q ss_pred CCCCeEEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCccccccccccccceEEEECCEeecccCccccccccccCcccc
Q 018394 8 AGEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRG 87 (356)
Q Consensus 8 ~~~s~~v~~~~g~~v~LvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~~D~pGl~~~~~~~~~~~ 87 (356)
.+++|++.+ |++++|+|+||||||||+++|+|...+ ..|.+.++|.++.. + .....++.
T Consensus 17 ~~v~~~i~~--G~~~~i~G~nGsGKSTLl~~l~G~~~~-----------~~G~i~~~g~~~~~-~-------~~~~i~~~ 75 (210)
T cd03269 17 DDISFSVEK--GEIFGLLGPNGAGKTTTIRMILGIILP-----------DSGEVLFDGKPLDI-A-------ARNRIGYL 75 (210)
T ss_pred eeeEEEEcC--CcEEEEECCCCCCHHHHHHHHhCCCCC-----------CceEEEECCCchhH-H-------HHccEEEe
Confidence 578999999 889999999999999999999999766 78999999976531 0 11122333
Q ss_pred ccccccc---cchhHHHHHHhcC--ChHHHHHHHHHHHHHccC--ccccccCcccccceecccee---------eeecCC
Q 018394 88 RQVIAVS---KSSDIVLMVLDAS--KSEGHRQILTKELEAVGL--RLNKRPPQIYFKKKKTGGIS---------FNSTLP 151 (356)
Q Consensus 88 ~~~~~~~---~~~d~i~~v~d~~--~~~~~~~~i~~~L~~~~i--~l~~~~~~lS~g~~qr~~ia---------l~~DEp 151 (356)
.|....+ ...+.+.+..... ......+.+.+.++.+++ .+++.+.+||+||+||+.++ +++|||
T Consensus 76 ~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~~lllDEP 155 (210)
T cd03269 76 PEERGLYPKMKVIDQLVYLAQLKGLKKEEARRRIDEWLERLELSEYANKRVEELSKGNQQKVQFIAAVIHDPELLILDEP 155 (210)
T ss_pred ccCCcCCcCCcHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCChHHHhCcHhhCCHHHHHHHHHHHHHhcCCCEEEEeCC
Confidence 3332222 2244443332211 112234567788999998 57888999999999999988 899999
Q ss_pred CCCCCHHHHHHHHH---Hhcc-cCcEEEEccCCCH
Q 018394 152 LTHVDEKLCYQILH---EYKI-HNAEVLFREDATV 182 (356)
Q Consensus 152 ~~~LD~~~~~~il~---~l~~-~~~~i~~thd~~~ 182 (356)
|++||+.....+++ .+.. +.+++++||+...
T Consensus 156 ~~~LD~~~~~~~~~~l~~~~~~~~tii~~sH~~~~ 190 (210)
T cd03269 156 FSGLDPVNVELLKDVIRELARAGKTVILSTHQMEL 190 (210)
T ss_pred CcCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHHH
Confidence 99999988555444 4432 4589999999764
No 124
>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional
Probab=99.85 E-value=6.1e-21 Score=177.19 Aligned_cols=149 Identities=23% Similarity=0.207 Sum_probs=109.1
Q ss_pred CCCCeEEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCccccccccccccceEEEECCEeecccCccccccccccCcccc
Q 018394 8 AGEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRG 87 (356)
Q Consensus 8 ~~~s~~v~~~~g~~v~LvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~~D~pGl~~~~~~~~~~~ 87 (356)
.++||++.+ |++++|+|+||||||||+++|+|...+ ..|.+.++|.++... ...+++.
T Consensus 29 ~~isl~i~~--Ge~~~I~G~NGsGKSTLlk~l~Gl~~p-----------~~G~i~~~g~~~~~~---------~~~i~~v 86 (257)
T PRK11247 29 NQLDLHIPA--GQFVAVVGRSGCGKSTLLRLLAGLETP-----------SAGELLAGTAPLAEA---------REDTRLM 86 (257)
T ss_pred eeeEEEEcC--CCEEEEECCCCCCHHHHHHHHhcCCCC-----------CCeEEEECCEEHHHh---------hCceEEE
Confidence 588999999 889999999999999999999999866 789999988765211 1122333
Q ss_pred ccccccccc---hhHHHHHHhcCChHHHHHHHHHHHHHccC--ccccccCcccccceecccee---------eeecCCCC
Q 018394 88 RQVIAVSKS---SDIVLMVLDASKSEGHRQILTKELEAVGL--RLNKRPPQIYFKKKKTGGIS---------FNSTLPLT 153 (356)
Q Consensus 88 ~~~~~~~~~---~d~i~~v~d~~~~~~~~~~i~~~L~~~~i--~l~~~~~~lS~g~~qr~~ia---------l~~DEp~~ 153 (356)
.|....+.. .+.+.+.. .. ...+.+.++|+.+++ .+++.+..||+||+||+.|+ +++||||+
T Consensus 87 ~q~~~l~~~~tv~enl~~~~---~~-~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqkqrl~laraL~~~p~lllLDEPt~ 162 (257)
T PRK11247 87 FQDARLLPWKKVIDNVGLGL---KG-QWRDAALQALAAVGLADRANEWPAALSGGQKQRVALARALIHRPGLLLLDEPLG 162 (257)
T ss_pred ecCccCCCCCcHHHHHHhcc---cc-hHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCC
Confidence 333322222 33332211 11 123457788999999 67888999999999999998 99999999
Q ss_pred CCCHHHHHHH---HHHhc-c-cCcEEEEccCCCH
Q 018394 154 HVDEKLCYQI---LHEYK-I-HNAEVLFREDATV 182 (356)
Q Consensus 154 ~LD~~~~~~i---l~~l~-~-~~~~i~~thd~~~ 182 (356)
+||+.....+ |.++. . +.+++++||+...
T Consensus 163 ~LD~~~~~~l~~~L~~~~~~~~~tviivsHd~~~ 196 (257)
T PRK11247 163 ALDALTRIEMQDLIESLWQQHGFTVLLVTHDVSE 196 (257)
T ss_pred CCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHH
Confidence 9999885554 44443 2 4589999999764
No 125
>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=99.85 E-value=6.9e-21 Score=175.12 Aligned_cols=160 Identities=19% Similarity=0.206 Sum_probs=114.8
Q ss_pred CCCCeEEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCccccccccccccceEEEECCEeecccCccccccccccCcccc
Q 018394 8 AGEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRG 87 (356)
Q Consensus 8 ~~~s~~v~~~~g~~v~LvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~~D~pGl~~~~~~~~~~~ 87 (356)
.+++|++.+ |++++|+|+||||||||+++|+|...| .+|.+.++|.++...+.... ....+++.
T Consensus 19 ~~vs~~i~~--Ge~~~l~G~nGsGKSTLl~~l~G~~~p-----------~~G~i~~~g~~~~~~~~~~~---~~~~i~~~ 82 (242)
T TIGR03411 19 NDLSLYVDP--GELRVIIGPNGAGKTTMMDVITGKTRP-----------DEGSVLFGGTDLTGLPEHQI---ARAGIGRK 82 (242)
T ss_pred eeeeEEEcC--CcEEEEECCCCCCHHHHHHHHhCCCCC-----------CCCeEEECCeecCCCCHHHH---HhcCeeEe
Confidence 689999999 889999999999999999999999766 78999999987653321111 11223444
Q ss_pred cccccccc---chhHHHHHHhcC----------ChHHHHHHHHHHHHHccC--ccccccCcccccceecccee-------
Q 018394 88 RQVIAVSK---SSDIVLMVLDAS----------KSEGHRQILTKELEAVGL--RLNKRPPQIYFKKKKTGGIS------- 145 (356)
Q Consensus 88 ~~~~~~~~---~~d~i~~v~d~~----------~~~~~~~~i~~~L~~~~i--~l~~~~~~lS~g~~qr~~ia------- 145 (356)
.+....+. ..+.+.+..... ........+.+.++.+++ .+++.+..||+|++||+.++
T Consensus 83 ~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Ge~qrv~laral~~~p 162 (242)
T TIGR03411 83 FQKPTVFENLTVFENLELALPRDKSVFASLFFRLSAEEKDRIEEVLETIGLADEADRLAGLLSHGQKQWLEIGMLLMQDP 162 (242)
T ss_pred ccccccCCCCCHHHHHHHhhhcccccccccccccHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCC
Confidence 44333332 244444322110 112234567888999998 67888999999999999988
Q ss_pred --eeecCCCCCCCHHHHHHH---HHHhcccCcEEEEccCCCHH
Q 018394 146 --FNSTLPLTHVDEKLCYQI---LHEYKIHNAEVLFREDATVD 183 (356)
Q Consensus 146 --l~~DEp~~~LD~~~~~~i---l~~l~~~~~~i~~thd~~~~ 183 (356)
+++||||++||+.....+ ++.+....++|++||+.+..
T Consensus 163 ~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~ 205 (242)
T TIGR03411 163 KLLLLDEPVAGMTDEETEKTAELLKSLAGKHSVVVVEHDMEFV 205 (242)
T ss_pred CEEEecCCccCCCHHHHHHHHHHHHHHhcCCEEEEEECCHHHH
Confidence 999999999999985544 44544456999999997543
No 126
>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.85 E-value=6.1e-21 Score=178.87 Aligned_cols=174 Identities=18% Similarity=0.165 Sum_probs=121.8
Q ss_pred CCCCeEEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCccccccccccccceEEEECCEeecccCccccccccccCcccc
Q 018394 8 AGEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRG 87 (356)
Q Consensus 8 ~~~s~~v~~~~g~~v~LvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~~D~pGl~~~~~~~~~~~ 87 (356)
.++||++.+ |++++|+|+||||||||+++|+|...| ..|.|.++|.++...+...+ ...+++.
T Consensus 22 ~~isl~i~~--Ge~~~i~G~nGsGKSTLl~~l~Gl~~p-----------~~G~i~~~g~~~~~~~~~~~----~~~i~~v 84 (274)
T PRK13647 22 KGLSLSIPE--GSKTALLGPNGAGKSTLLLHLNGIYLP-----------QRGRVKVMGREVNAENEKWV----RSKVGLV 84 (274)
T ss_pred eeEEEEEcC--CCEEEEECCCCCcHHHHHHHHhcCCCC-----------CceEEEECCEECCCCCHHHH----HhhEEEE
Confidence 689999999 889999999999999999999999876 79999999988643221111 1224444
Q ss_pred ccccc--cc--cchhHHHHHHhc--CChHHHHHHHHHHHHHccC--ccccccCcccccceecccee---------eeecC
Q 018394 88 RQVIA--VS--KSSDIVLMVLDA--SKSEGHRQILTKELEAVGL--RLNKRPPQIYFKKKKTGGIS---------FNSTL 150 (356)
Q Consensus 88 ~~~~~--~~--~~~d~i~~v~d~--~~~~~~~~~i~~~L~~~~i--~l~~~~~~lS~g~~qr~~ia---------l~~DE 150 (356)
.|... .+ ...+.+.+.... .......+.+.+.|+.+++ .+++.+..||+||+||++|| +++||
T Consensus 85 ~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgG~~qrv~laraL~~~p~llllDE 164 (274)
T PRK13647 85 FQDPDDQVFSSTVWDDVAFGPVNMGLDKDEVERRVEEALKAVRMWDFRDKPPYHLSYGQKKRVAIAGVLAMDPDVIVLDE 164 (274)
T ss_pred ecChhhhhccCcHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHHHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEEC
Confidence 44321 11 223333322211 1222234567888999999 68889999999999999998 99999
Q ss_pred CCCCCCHHHHHHHHH---Hhcc-cCcEEEEccCCCHHHHHHHHhccccccceEEEeecCCC
Q 018394 151 PLTHVDEKLCYQILH---EYKI-HNAEVLFREDATVDDLIDVIEGNRKYMKCVYVYNKIDV 207 (356)
Q Consensus 151 p~~~LD~~~~~~il~---~l~~-~~~~i~~thd~~~~~~~~~i~~~~~~~p~i~v~NK~Dl 207 (356)
||++||+....++++ .+.. +.+++++||+.+.... ++..+++++..-+
T Consensus 165 Pt~~LD~~~~~~l~~~l~~~~~~g~tili~tH~~~~~~~---------~~d~i~~l~~G~i 216 (274)
T PRK13647 165 PMAYLDPRGQETLMEILDRLHNQGKTVIVATHDVDLAAE---------WADQVIVLKEGRV 216 (274)
T ss_pred CCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHH---------hCCEEEEEECCEE
Confidence 999999998655544 4432 4599999999765321 2356677765543
No 127
>PRK13651 cobalt transporter ATP-binding subunit; Provisional
Probab=99.85 E-value=5.7e-21 Score=181.55 Aligned_cols=178 Identities=17% Similarity=0.157 Sum_probs=122.1
Q ss_pred CCCCeEEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCccccccccccccceEEEECCEeecc-------------cCcc
Q 018394 8 AGEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQL-------------LDLP 74 (356)
Q Consensus 8 ~~~s~~v~~~~g~~v~LvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~-------------~D~p 74 (356)
+++||++.+ |++++|+|+||||||||+++|+|...+ ..|.+.++|.++.. ++..
T Consensus 24 ~~vsl~i~~--Ge~v~iiG~nGsGKSTLl~~L~Gl~~p-----------~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~ 90 (305)
T PRK13651 24 DNVSVEINQ--GEFIAIIGQTGSGKTTFIEHLNALLLP-----------DTGTIEWIFKDEKNKKKTKEKEKVLEKLVIQ 90 (305)
T ss_pred eeeEEEEeC--CCEEEEECCCCCcHHHHHHHHhCCCCC-----------CCcEEEEeceecccccccccccccccccccc
Confidence 589999999 889999999999999999999999876 78999998865421 1111
Q ss_pred cc-------ccccccCcccccccc--ccc--cchhHHHHHHhc--CChHHHHHHHHHHHHHccC---ccccccCcccccc
Q 018394 75 GI-------IEGASEGKGRGRQVI--AVS--KSSDIVLMVLDA--SKSEGHRQILTKELEAVGL---RLNKRPPQIYFKK 138 (356)
Q Consensus 75 Gl-------~~~~~~~~~~~~~~~--~~~--~~~d~i~~v~d~--~~~~~~~~~i~~~L~~~~i---~l~~~~~~lS~g~ 138 (356)
+. .......+++.+|.. ..+ ...+.+.+.... .......+++.+.|+.+|+ .+++++..||+||
T Consensus 91 ~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGq 170 (305)
T PRK13651 91 KTRFKKIKKIKEIRRRVGVVFQFAEYQLFEQTIEKDIIFGPVSMGVSKEEAKKRAAKYIELVGLDESYLQRSPFELSGGQ 170 (305)
T ss_pred cccccccchHHHHHhceEEEeeCcccccccccHHHHHHhhHHHcCCCHHHHHHHHHHHHHHcCCChhhhhCChhhCCHHH
Confidence 00 001123345555532 111 223334332211 2222334567888999998 4788999999999
Q ss_pred eecccee---------eeecCCCCCCCHHHHHHHHH---Hhc-ccCcEEEEccCCCHHHHHHHHhccccccceEEEeecC
Q 018394 139 KKTGGIS---------FNSTLPLTHVDEKLCYQILH---EYK-IHNAEVLFREDATVDDLIDVIEGNRKYMKCVYVYNKI 205 (356)
Q Consensus 139 ~qr~~ia---------l~~DEp~~~LD~~~~~~il~---~l~-~~~~~i~~thd~~~~~~~~~i~~~~~~~p~i~v~NK~ 205 (356)
+||++|| +++||||++||+.....+++ .+. .+.+++++|||.+.... ++..+++++..
T Consensus 171 kqrvalA~aL~~~P~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivtHd~~~~~~---------~adrv~vl~~G 241 (305)
T PRK13651 171 KRRVALAGILAMEPDFLVFDEPTAGLDPQGVKEILEIFDNLNKQGKTIILVTHDLDNVLE---------WTKRTIFFKDG 241 (305)
T ss_pred HHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeeCHHHHHH---------hCCEEEEEECC
Confidence 9999998 99999999999988555444 443 34599999999754321 23667777765
Q ss_pred CC
Q 018394 206 DV 207 (356)
Q Consensus 206 Dl 207 (356)
-+
T Consensus 242 ~i 243 (305)
T PRK13651 242 KI 243 (305)
T ss_pred EE
Confidence 44
No 128
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=99.85 E-value=5.7e-21 Score=189.69 Aligned_cols=192 Identities=20% Similarity=0.164 Sum_probs=136.2
Q ss_pred CCCCeEEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCccccccccccccceEEEECCEeecccCccccccccccCcccc
Q 018394 8 AGEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRG 87 (356)
Q Consensus 8 ~~~s~~v~~~~g~~v~LvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~~D~pGl~~~~~~~~~~~ 87 (356)
+++||++.+ |+.+||||.+||||||+.++|.|...+-. ....|.|.++|.++.-++..+.+......+++.
T Consensus 26 ~~vsf~v~~--GE~lgIvGESGsGKSt~a~~i~gll~~~~-------~~~~G~I~~~g~dl~~l~~~~~r~~rg~~Ia~i 96 (539)
T COG1123 26 RDVSFEVEP--GEILGIVGESGSGKSTLALALMGLLPEGG-------RITSGEVILDGRDLLGLSEREMRKLRGKRIAMI 96 (539)
T ss_pred ecceEEecC--CcEEEEEcCCCCCHHHHHHHHhccCCCCC-------cccceEEEECCcchhcCCHHHHHHhccccEEEE
Confidence 689999999 88999999999999999999999986510 125899999999766555444433333344455
Q ss_pred cccccc-ccc----hhHHHHHHhcC---ChHHHHHHHHHHHHHccC--cc--ccccCcccccceecccee---------e
Q 018394 88 RQVIAV-SKS----SDIVLMVLDAS---KSEGHRQILTKELEAVGL--RL--NKRPPQIYFKKKKTGGIS---------F 146 (356)
Q Consensus 88 ~~~~~~-~~~----~d~i~~v~d~~---~~~~~~~~i~~~L~~~~i--~l--~~~~~~lS~g~~qr~~ia---------l 146 (356)
+|.... +.. -+-+.-++... ...+..+++.++|+.++| .. +++|.+|||||+||+.|| |
T Consensus 97 ~Q~p~~slnP~~tIg~Qi~E~~~~h~~~~~~ea~~~a~elL~~Vgl~~~~~~~~yPheLSGG~rQRv~iAmALa~~P~LL 176 (539)
T COG1123 97 FQDPMTSLNPVMTIGDQIREALRLHGKGSRAEARKRAVELLEQVGLPDPERRDRYPHQLSGGMRQRVMIAMALALKPKLL 176 (539)
T ss_pred ecCchhhcCchhhHHHHHHHHHHHhccccHHHHHHHHHHHHHHcCCCChhhhccCCcccCchHHHHHHHHHHHhCCCCEE
Confidence 554321 111 12222222222 244566778899999999 22 469999999999999988 9
Q ss_pred eecCCCCCCCHHHHHHHHHHhc-----ccCcEEEEccCCCHHHHHHHHhccccccceEEEeecCCCCChhhHHHHh
Q 018394 147 NSTLPLTHVDEKLCYQILHEYK-----IHNAEVLFREDATVDDLIDVIEGNRKYMKCVYVYNKIDVIGIDDVDKLA 217 (356)
Q Consensus 147 ~~DEp~~~LD~~~~~~il~~l~-----~~~~~i~~thd~~~~~~~~~i~~~~~~~p~i~v~NK~Dl~~~~~~~~l~ 217 (356)
++||||++||.....++|+.++ .+-+++++|||+.+...+ ++.++|+.+..+......+++.
T Consensus 177 IaDEPTTaLDvt~q~qIL~llk~l~~e~g~a~l~ITHDl~Vva~~---------aDrv~Vm~~G~iVE~G~~~~i~ 243 (539)
T COG1123 177 IADEPTTALDVTTQAQILDLLKDLQRELGMAVLFITHDLGVVAEL---------ADRVVVMYKGEIVETGPTEEIL 243 (539)
T ss_pred EECCCccccCHHHHHHHHHHHHHHHHHcCcEEEEEcCCHHHHHHh---------cCeEEEEECCEEEEecCHHHHH
Confidence 9999999999988666666554 244999999998764332 4788999998877554444444
No 129
>PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.85 E-value=7.3e-21 Score=179.51 Aligned_cols=176 Identities=19% Similarity=0.154 Sum_probs=122.7
Q ss_pred CCCCeEEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCccccccccccccceEEEECCEeecccCccccccccccCcccc
Q 018394 8 AGEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRG 87 (356)
Q Consensus 8 ~~~s~~v~~~~g~~v~LvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~~D~pGl~~~~~~~~~~~ 87 (356)
+++||++.+ |+++||+|+|||||||||++|+|...| ..|.|.++|.++.... ++.. .....+++.
T Consensus 24 ~~vs~~i~~--Ge~~~i~G~nGaGKSTLl~~l~Gl~~p-----------~~G~i~~~g~~~~~~~-~~~~-~~~~~ig~v 88 (287)
T PRK13637 24 DNVNIEIED--GEFVGLIGHTGSGKSTLIQHLNGLLKP-----------TSGKIIIDGVDITDKK-VKLS-DIRKKVGLV 88 (287)
T ss_pred eeeEEEEcC--CCEEEEECCCCCcHHHHHHHHhcCCCC-----------CccEEEECCEECCCcC-ccHH-HHhhceEEE
Confidence 589999999 889999999999999999999999876 8999999998875321 1110 111234444
Q ss_pred cccc--cc--ccchhHHHHHHhc--CChHHHHHHHHHHHHHccCc----cccccCcccccceecccee---------eee
Q 018394 88 RQVI--AV--SKSSDIVLMVLDA--SKSEGHRQILTKELEAVGLR----LNKRPPQIYFKKKKTGGIS---------FNS 148 (356)
Q Consensus 88 ~~~~--~~--~~~~d~i~~v~d~--~~~~~~~~~i~~~L~~~~i~----l~~~~~~lS~g~~qr~~ia---------l~~ 148 (356)
.|.. .. ....+.+.+.... ....+..+.+.+.|+.+++. .++++..||+||+||++|| +++
T Consensus 89 ~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~~LSgGq~qrv~iAraL~~~P~llll 168 (287)
T PRK13637 89 FQYPEYQLFEETIEKDIAFGPINLGLSEEEIENRVKRAMNIVGLDYEDYKDKSPFELSGGQKRRVAIAGVVAMEPKILIL 168 (287)
T ss_pred ecCchhccccccHHHHHHhHHHHCCCCHHHHHHHHHHHHHHcCCCchhhccCCcccCCHHHHHHHHHHHHHHcCCCEEEE
Confidence 4432 11 1224444432221 12223345678889999982 6788999999999999998 999
Q ss_pred cCCCCCCCHHHHHHH---HHHhcc--cCcEEEEccCCCHHHHHHHHhccccccceEEEeecCCC
Q 018394 149 TLPLTHVDEKLCYQI---LHEYKI--HNAEVLFREDATVDDLIDVIEGNRKYMKCVYVYNKIDV 207 (356)
Q Consensus 149 DEp~~~LD~~~~~~i---l~~l~~--~~~~i~~thd~~~~~~~~~i~~~~~~~p~i~v~NK~Dl 207 (356)
||||++||+....++ ++++.. +.+++++|||.+.... ++..++++...-+
T Consensus 169 DEPt~gLD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~~~~~---------~~drv~~l~~G~i 223 (287)
T PRK13637 169 DEPTAGLDPKGRDEILNKIKELHKEYNMTIILVSHSMEDVAK---------LADRIIVMNKGKC 223 (287)
T ss_pred ECCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHH---------hCCEEEEEECCEE
Confidence 999999999885554 555543 4599999999754321 2366777765443
No 130
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=99.85 E-value=1.1e-20 Score=172.15 Aligned_cols=162 Identities=20% Similarity=0.180 Sum_probs=111.2
Q ss_pred CCCCeEEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCccccccccccccceEEEECCEeecccCccccccccccCcccc
Q 018394 8 AGEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRG 87 (356)
Q Consensus 8 ~~~s~~v~~~~g~~v~LvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~~D~pGl~~~~~~~~~~~ 87 (356)
+++||++.+ |++++|+|+||||||||+++|+|...+ ..|.+.++|.++.-.+.... .......++.
T Consensus 22 ~~vs~~i~~--Ge~~~i~G~nGsGKSTLl~~l~G~~~~-----------~~G~i~~~g~~~~~~~~~~~-~~~~~~i~~~ 87 (228)
T cd03257 22 DDVSFSIKK--GETLGLVGESGSGKSTLARAILGLLKP-----------TSGSIIFDGKDLLKLSRRLR-KIRRKEIQMV 87 (228)
T ss_pred cCceeEEcC--CCEEEEECCCCCCHHHHHHHHhCCCCC-----------CCceEEECCEEccccchhhH-HHhhccEEEE
Confidence 689999999 889999999999999999999999866 78999999987653321000 0011223333
Q ss_pred cccc--cc---ccchhHHHHHHhcCC--h-HHHHHH-HHHHHHHccC---ccccccCcccccceecccee---------e
Q 018394 88 RQVI--AV---SKSSDIVLMVLDASK--S-EGHRQI-LTKELEAVGL---RLNKRPPQIYFKKKKTGGIS---------F 146 (356)
Q Consensus 88 ~~~~--~~---~~~~d~i~~v~d~~~--~-~~~~~~-i~~~L~~~~i---~l~~~~~~lS~g~~qr~~ia---------l 146 (356)
.|.. .. ....+.+.+...... . ...... +.+.++.+++ .+++.+..||+||+||+.++ +
T Consensus 88 ~q~~~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrv~laral~~~p~ll 167 (228)
T cd03257 88 FQDPMSSLNPRMTIGEQIAEPLRIHGKLSKKEARKEAVLLLLVGVGLPEEVLNRYPHELSGGQRQRVAIARALALNPKLL 167 (228)
T ss_pred ecCchhhcCCcCCHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHCCCChhHhhCCchhcCHHHHHHHHHHHHHhcCCCEE
Confidence 3332 11 122455443322221 1 111122 2477888887 36888999999999999988 9
Q ss_pred eecCCCCCCCHHHHHHH---HHHhcc--cCcEEEEccCCCHH
Q 018394 147 NSTLPLTHVDEKLCYQI---LHEYKI--HNAEVLFREDATVD 183 (356)
Q Consensus 147 ~~DEp~~~LD~~~~~~i---l~~l~~--~~~~i~~thd~~~~ 183 (356)
++||||++||+.....+ +.++.. +.+++++||+.+..
T Consensus 168 lLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~ 209 (228)
T cd03257 168 IADEPTSALDVSVQAQILDLLKKLQEELGLTLLFITHDLGVV 209 (228)
T ss_pred EecCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHH
Confidence 99999999999875544 444443 46999999997643
No 131
>PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.85 E-value=6.2e-21 Score=178.80 Aligned_cols=175 Identities=13% Similarity=0.084 Sum_probs=122.7
Q ss_pred CCCCeEEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCccccccccccccceEEEECCEeecccCccccccccccCcccc
Q 018394 8 AGEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRG 87 (356)
Q Consensus 8 ~~~s~~v~~~~g~~v~LvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~~D~pGl~~~~~~~~~~~ 87 (356)
+++||++.+ |++++|+|+|||||||||++|+|...+ ..|.+.++|.++.-.+... .....+++.
T Consensus 19 ~~vsl~i~~--Ge~~~i~G~nGsGKSTLl~~l~Gl~~p-----------~~G~i~~~g~~~~~~~~~~---~~~~~i~~v 82 (274)
T PRK13644 19 ENINLVIKK--GEYIGIIGKNGSGKSTLALHLNGLLRP-----------QKGKVLVSGIDTGDFSKLQ---GIRKLVGIV 82 (274)
T ss_pred eeeEEEEeC--CCEEEEECCCCCCHHHHHHHHhcCCCC-----------CCceEEECCEECCccccHH---HHHhheEEE
Confidence 689999999 889999999999999999999999866 7999999998764332110 011223443
Q ss_pred ccccc----cccchhHHHHHHhc--CChHHHHHHHHHHHHHccC--ccccccCcccccceecccee---------eeecC
Q 018394 88 RQVIA----VSKSSDIVLMVLDA--SKSEGHRQILTKELEAVGL--RLNKRPPQIYFKKKKTGGIS---------FNSTL 150 (356)
Q Consensus 88 ~~~~~----~~~~~d~i~~v~d~--~~~~~~~~~i~~~L~~~~i--~l~~~~~~lS~g~~qr~~ia---------l~~DE 150 (356)
.|... .....+.+.+.... .......+.+.+.++.+++ ..++.+..||+||+||++|| +++||
T Consensus 83 ~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDE 162 (274)
T PRK13644 83 FQNPETQFVGRTVEEDLAFGPENLCLPPIEIRKRVDRALAEIGLEKYRHRSPKTLSGGQGQCVALAGILTMEPECLIFDE 162 (274)
T ss_pred EEChhhhcccchHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHHHhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEeC
Confidence 44321 11223444332211 1222334567788999999 67889999999999999998 99999
Q ss_pred CCCCCCHHHHHHHHH---Hhcc-cCcEEEEccCCCHHHHHHHHhccccccceEEEeecCCCC
Q 018394 151 PLTHVDEKLCYQILH---EYKI-HNAEVLFREDATVDDLIDVIEGNRKYMKCVYVYNKIDVI 208 (356)
Q Consensus 151 p~~~LD~~~~~~il~---~l~~-~~~~i~~thd~~~~~~~~~i~~~~~~~p~i~v~NK~Dl~ 208 (356)
||++||+.....+++ ++.. +.+++++||+.+.... +..++++++..+.
T Consensus 163 Pt~gLD~~~~~~l~~~l~~l~~~g~til~~tH~~~~~~~----------~d~v~~l~~G~i~ 214 (274)
T PRK13644 163 VTSMLDPDSGIAVLERIKKLHEKGKTIVYITHNLEELHD----------ADRIIVMDRGKIV 214 (274)
T ss_pred CcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHhh----------CCEEEEEECCEEE
Confidence 999999988555444 4443 4599999999764322 3667777766543
No 132
>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional
Probab=99.85 E-value=6e-21 Score=173.82 Aligned_cols=159 Identities=17% Similarity=0.145 Sum_probs=113.2
Q ss_pred CCCCeEEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCccccccccccccceEEEECCEeecccCccccccccccCcccc
Q 018394 8 AGEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRG 87 (356)
Q Consensus 8 ~~~s~~v~~~~g~~v~LvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~~D~pGl~~~~~~~~~~~ 87 (356)
.++||++.+ |++++|+|+||||||||+++|+|...+ ..|.+.++|.++...+..- ....+++.
T Consensus 24 ~~vs~~i~~--Ge~~~i~G~nGsGKSTLl~~l~G~~~~-----------~~G~i~~~g~~~~~~~~~~----~~~~i~~~ 86 (225)
T PRK10247 24 NNISFSLRA--GEFKLITGPSGCGKSTLLKIVASLISP-----------TSGTLLFEGEDISTLKPEI----YRQQVSYC 86 (225)
T ss_pred eccEEEEcC--CCEEEEECCCCCCHHHHHHHHhcccCC-----------CCCeEEECCEEcCcCCHHH----HHhccEEE
Confidence 689999999 889999999999999999999998766 7999999998765433211 11233333
Q ss_pred cccccccc--chhHHHHHHhcCChHHHHHHHHHHHHHccC---ccccccCcccccceecccee---------eeecCCCC
Q 018394 88 RQVIAVSK--SSDIVLMVLDASKSEGHRQILTKELEAVGL---RLNKRPPQIYFKKKKTGGIS---------FNSTLPLT 153 (356)
Q Consensus 88 ~~~~~~~~--~~d~i~~v~d~~~~~~~~~~i~~~L~~~~i---~l~~~~~~lS~g~~qr~~ia---------l~~DEp~~ 153 (356)
.|....+. ..+.+.+...........+.+.+.|+.+++ ..++++..||+|++||++|+ +++||||+
T Consensus 87 ~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~ 166 (225)
T PRK10247 87 AQTPTLFGDTVYDNLIFPWQIRNQQPDPAIFLDDLERFALPDTILTKNIAELSGGEKQRISLIRNLQFMPKVLLLDEITS 166 (225)
T ss_pred ecccccccccHHHHHHhHHhhcCCChHHHHHHHHHHHcCCChHHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcc
Confidence 44332222 234443322221111223456788999988 36888999999999999998 99999999
Q ss_pred CCCHHHHHHH---HHHhcc--cCcEEEEccCCCHH
Q 018394 154 HVDEKLCYQI---LHEYKI--HNAEVLFREDATVD 183 (356)
Q Consensus 154 ~LD~~~~~~i---l~~l~~--~~~~i~~thd~~~~ 183 (356)
+||+.....+ +.++.. +.+++++||+.+..
T Consensus 167 ~LD~~~~~~l~~~l~~~~~~~~~tvii~sh~~~~~ 201 (225)
T PRK10247 167 ALDESNKHNVNEIIHRYVREQNIAVLWVTHDKDEI 201 (225)
T ss_pred cCCHHHHHHHHHHHHHHHHhcCCEEEEEECChHHH
Confidence 9999885544 445432 45899999997653
No 133
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=99.85 E-value=7.8e-21 Score=173.13 Aligned_cols=160 Identities=20% Similarity=0.157 Sum_probs=111.0
Q ss_pred CCCCeEEEecCCcEEEEEcCCCCcHHHHHHHHHcCC-----CCccccccccccccceEEEECCEeecccCcccccccccc
Q 018394 8 AGEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTH-----SEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASE 82 (356)
Q Consensus 8 ~~~s~~v~~~~g~~v~LvG~~gaGKSTLln~L~g~~-----~~vs~~p~TT~~~~~G~i~~~g~~i~~~D~pGl~~~~~~ 82 (356)
.++||++.+ |++++|+|+||||||||+++|+|.. .+ .+|.+.++|.++...+. ... ....
T Consensus 17 ~~vsl~i~~--Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~-----------~~G~i~~~g~~~~~~~~-~~~-~~~~ 81 (227)
T cd03260 17 KDISLDIPK--GEITALIGPSGCGKSTLLRLLNRLNDLIPGAP-----------DEGEVLLDGKDIYDLDV-DVL-ELRR 81 (227)
T ss_pred eeeEEEEcC--CCEEEEECCCCCCHHHHHHHHHhhcccccCCC-----------CCeEEEECCEEhhhcch-HHH-HHHh
Confidence 588999999 8899999999999999999999997 55 78999999987653321 000 0112
Q ss_pred Cccccccccccc--cchhHHHHHHhcCC--h-HHHHHHHHHHHHHccC--ccccc--cCcccccceecccee--------
Q 018394 83 GKGRGRQVIAVS--KSSDIVLMVLDASK--S-EGHRQILTKELEAVGL--RLNKR--PPQIYFKKKKTGGIS-------- 145 (356)
Q Consensus 83 ~~~~~~~~~~~~--~~~d~i~~v~d~~~--~-~~~~~~i~~~L~~~~i--~l~~~--~~~lS~g~~qr~~ia-------- 145 (356)
.+++..|....+ ...+.+.+...... . ....+.+.+.++.+++ .+++. +..||+||+||++|+
T Consensus 82 ~i~~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgG~~qrv~la~al~~~p~ 161 (227)
T cd03260 82 RVGMVFQKPNPFPGSIYDNVAYGLRLHGIKLKEELDERVEEALRKAALWDEVKDRLHALGLSGGQQQRLCLARALANEPE 161 (227)
T ss_pred hEEEEecCchhccccHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHcCCChHHhccCCcccCCHHHHHHHHHHHHHhcCCC
Confidence 233333333222 22344433222111 1 1134567788999998 44555 589999999999998
Q ss_pred -eeecCCCCCCCHHHHHHHHH---HhcccCcEEEEccCCCH
Q 018394 146 -FNSTLPLTHVDEKLCYQILH---EYKIHNAEVLFREDATV 182 (356)
Q Consensus 146 -l~~DEp~~~LD~~~~~~il~---~l~~~~~~i~~thd~~~ 182 (356)
+++||||++||+.....+++ ++....++|++||+.+.
T Consensus 162 llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~ 202 (227)
T cd03260 162 VLLLDEPTSALDPISTAKIEELIAELKKEYTIVIVTHNMQQ 202 (227)
T ss_pred EEEEeCCCccCCHHHHHHHHHHHHHHhhCcEEEEEeccHHH
Confidence 99999999999988555544 44333689999999764
No 134
>COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.85 E-value=6.5e-21 Score=166.87 Aligned_cols=174 Identities=16% Similarity=0.139 Sum_probs=126.4
Q ss_pred CCCCeEEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCccccccccccccceEEEECCEeecccCccccccccccCcccc
Q 018394 8 AGEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRG 87 (356)
Q Consensus 8 ~~~s~~v~~~~g~~v~LvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~~D~pGl~~~~~~~~~~~ 87 (356)
.+++|++.. |+.++|+|||||||||||++|+|...| ..|.+.++|.++.......+.. ..+..
T Consensus 18 ~~vsl~~~p--Gev~ailGPNGAGKSTlLk~LsGel~p-----------~~G~v~~~g~~l~~~~~~~lA~----~raVl 80 (259)
T COG4559 18 DGVSLDLRP--GEVLAILGPNGAGKSTLLKALSGELSP-----------DSGEVTLNGVPLNSWPPEELAR----HRAVL 80 (259)
T ss_pred cCcceeccC--CcEEEEECCCCccHHHHHHHhhCccCC-----------CCCeEeeCCcChhhCCHHHHHH----Hhhhc
Confidence 589999999 889999999999999999999999877 8999999998775432221111 11111
Q ss_pred ccc---cccccchhHHHHHHhc----CChHHHHHHHHHHHHHccC--ccccccCcccccceecccee-------------
Q 018394 88 RQV---IAVSKSSDIVLMVLDA----SKSEGHRQILTKELEAVGL--RLNKRPPQIYFKKKKTGGIS------------- 145 (356)
Q Consensus 88 ~~~---~~~~~~~d~i~~v~d~----~~~~~~~~~i~~~L~~~~i--~l~~~~~~lS~g~~qr~~ia------------- 145 (356)
+|. ...|...+++.+-.-. ..+.++...+++.|...++ +..+....||||++||+.+|
T Consensus 81 pQ~s~laFpFtv~eVV~mGr~p~~~g~~~~e~~~i~~~ala~~d~~~la~R~y~~LSGGEqQRVqlARvLaQl~~~v~~~ 160 (259)
T COG4559 81 PQNSSLAFPFTVQEVVQMGRIPHRSGREPEEDERIAAQALAATDLSGLAGRDYRTLSGGEQQRVQLARVLAQLWPPVPSG 160 (259)
T ss_pred ccCcccccceEHHHHHHhcccccccCCCchhhHHHHHHHHHHcChhhhhccchhhcCchHHHHHHHHHHHHHccCCCCCC
Confidence 221 1223344555443222 2234566668899999998 78899999999999999887
Q ss_pred --eeecCCCCCCCHHHHHHH---HHHhcc-cCcEEEEccCCCHHHHHHHHhccccccceEEEeecCCC
Q 018394 146 --FNSTLPLTHVDEKLCYQI---LHEYKI-HNAEVLFREDATVDDLIDVIEGNRKYMKCVYVYNKIDV 207 (356)
Q Consensus 146 --l~~DEp~~~LD~~~~~~i---l~~l~~-~~~~i~~thd~~~~~~~~~i~~~~~~~p~i~v~NK~Dl 207 (356)
+++||||++||......+ .+++.. +.+++.+-||.++... |.+.|+++.+.-+
T Consensus 161 r~L~LDEPtsaLDi~HQ~~tl~laR~la~~g~~V~~VLHDLNLAA~---------YaDrivll~~Grv 219 (259)
T COG4559 161 RWLFLDEPTSALDIAHQHHTLRLARQLAREGGAVLAVLHDLNLAAQ---------YADRIVLLHQGRV 219 (259)
T ss_pred ceEEecCCccccchHHHHHHHHHHHHHHhcCCcEEEEEccchHHHH---------hhheeeeeeCCeE
Confidence 799999999999875544 455553 4589999999987643 5577777766543
No 135
>PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.85 E-value=1e-20 Score=177.78 Aligned_cols=162 Identities=19% Similarity=0.169 Sum_probs=112.5
Q ss_pred CCCCeEEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCccccccccccccceEEEECCEeecccCccccccccccCcccc
Q 018394 8 AGEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRG 87 (356)
Q Consensus 8 ~~~s~~v~~~~g~~v~LvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~~D~pGl~~~~~~~~~~~ 87 (356)
.++||++.+ |++++|+|+||||||||+++|+|...| ..|.|.++|.++.....+.-.......+++.
T Consensus 24 ~~is~~i~~--Ge~~~l~G~nGsGKSTLl~~i~Gl~~p-----------~~G~i~~~g~~i~~~~~~~~~~~~~~~i~~~ 90 (280)
T PRK13649 24 FDVNLTIED--GSYTAFIGHTGSGKSTIMQLLNGLHVP-----------TQGSVRVDDTLITSTSKNKDIKQIRKKVGLV 90 (280)
T ss_pred eeeEEEEcC--CcEEEEECCCCCCHHHHHHHHhCCCCC-----------CceEEEECCEEccccccccCHHHHHhheEEE
Confidence 688999999 889999999999999999999999876 7899999998875321100000111223444
Q ss_pred cccc--ccc--cchhHHHHHHhcC--ChHHHHHHHHHHHHHccC---ccccccCcccccceecccee---------eeec
Q 018394 88 RQVI--AVS--KSSDIVLMVLDAS--KSEGHRQILTKELEAVGL---RLNKRPPQIYFKKKKTGGIS---------FNST 149 (356)
Q Consensus 88 ~~~~--~~~--~~~d~i~~v~d~~--~~~~~~~~i~~~L~~~~i---~l~~~~~~lS~g~~qr~~ia---------l~~D 149 (356)
.|.. ..+ ...+.+.+..... ......+.+.++|+.+++ .+++++.+||+||+||+++| +++|
T Consensus 91 ~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLD 170 (280)
T PRK13649 91 FQFPESQLFEETVLKDVAFGPQNFGVSQEEAEALAREKLALVGISESLFEKNPFELSGGQMRRVAIAGILAMEPKILVLD 170 (280)
T ss_pred eeChhhhhccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCChhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEe
Confidence 4432 111 2244444332211 222233456778888888 35788999999999999988 9999
Q ss_pred CCCCCCCHHHHHHHH---HHhcc-cCcEEEEccCCCH
Q 018394 150 LPLTHVDEKLCYQIL---HEYKI-HNAEVLFREDATV 182 (356)
Q Consensus 150 Ep~~~LD~~~~~~il---~~l~~-~~~~i~~thd~~~ 182 (356)
|||++||+.....++ ..+.. +.+++++||+.+.
T Consensus 171 EPt~~LD~~~~~~l~~~l~~~~~~~~tiiivsH~~~~ 207 (280)
T PRK13649 171 EPTAGLDPKGRKELMTLFKKLHQSGMTIVLVTHLMDD 207 (280)
T ss_pred CCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeccHHH
Confidence 999999998855544 44433 4599999999754
No 136
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.85 E-value=5.8e-21 Score=174.16 Aligned_cols=152 Identities=22% Similarity=0.329 Sum_probs=119.1
Q ss_pred CCCCeEEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCccccccccccccceEEEECCEeecccCccccccccccCcccc
Q 018394 8 AGEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRG 87 (356)
Q Consensus 8 ~~~s~~v~~~~g~~v~LvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~~D~pGl~~~~~~~~~~~ 87 (356)
.+|||++.+ |++++|||.+|||||||-++|+|+..| +.|.|.++|.++..++
T Consensus 30 d~Vsf~i~~--ge~~glVGESG~GKSTlgr~i~~L~~p-----------t~G~i~f~g~~i~~~~--------------- 81 (268)
T COG4608 30 DGVSFSIKE--GETLGLVGESGCGKSTLGRLILGLEEP-----------TSGEILFEGKDITKLS--------------- 81 (268)
T ss_pred cceeEEEcC--CCEEEEEecCCCCHHHHHHHHHcCcCC-----------CCceEEEcCcchhhcc---------------
Confidence 589999999 889999999999999999999999877 8999999998865332
Q ss_pred ccccccccchhHHHHHHhcCChHHHHHHHHHHHHHccC---ccccccCcccccceecccee---------eeecCCCCCC
Q 018394 88 RQVIAVSKSSDIVLMVLDASKSEGHRQILTKELEAVGL---RLNKRPPQIYFKKKKTGGIS---------FNSTLPLTHV 155 (356)
Q Consensus 88 ~~~~~~~~~~d~i~~v~d~~~~~~~~~~i~~~L~~~~i---~l~~~~~~lS~g~~qr~~ia---------l~~DEp~~~L 155 (356)
.....+++.+.|+.+|+ .+.++|.++||||+||++|| +++|||+++|
T Consensus 82 ---------------------~~~~~~~v~elL~~Vgl~~~~~~ryPhelSGGQrQRi~IARALal~P~liV~DEpvSaL 140 (268)
T COG4608 82 ---------------------KEERRERVLELLEKVGLPEEFLYRYPHELSGGQRQRIGIARALALNPKLIVADEPVSAL 140 (268)
T ss_pred ---------------------hhHHHHHHHHHHHHhCCCHHHhhcCCcccCchhhhhHHHHHHHhhCCcEEEecCchhhc
Confidence 22345678889999998 78999999999999999998 9999999999
Q ss_pred CHHH---HHHHHHHhcc--cCcEEEEccCCCHHHHHHHHhccccccceEEEeecCCCCChhhHHHHh
Q 018394 156 DEKL---CYQILHEYKI--HNAEVLFREDATVDDLIDVIEGNRKYMKCVYVYNKIDVIGIDDVDKLA 217 (356)
Q Consensus 156 D~~~---~~~il~~l~~--~~~~i~~thd~~~~~~~~~i~~~~~~~p~i~v~NK~Dl~~~~~~~~l~ 217 (356)
|... +..+|..++. +-+.++++||......+ .+.+.|+...-+......+++.
T Consensus 141 DvSiqaqIlnLL~dlq~~~~lt~lFIsHDL~vv~~i---------sdri~VMy~G~iVE~g~~~~~~ 198 (268)
T COG4608 141 DVSVQAQILNLLKDLQEELGLTYLFISHDLSVVRYI---------SDRIAVMYLGKIVEIGPTEEVF 198 (268)
T ss_pred chhHHHHHHHHHHHHHHHhCCeEEEEEEEHHhhhhh---------cccEEEEecCceeEecCHHHHh
Confidence 9965 4455555553 44899999998776543 2556666555444333333433
No 137
>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.85 E-value=8.5e-21 Score=178.96 Aligned_cols=176 Identities=16% Similarity=0.129 Sum_probs=121.6
Q ss_pred CCCCeEEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCccccccccccccceEEEECCEeecccCc-cccccccccCccc
Q 018394 8 AGEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDL-PGIIEGASEGKGR 86 (356)
Q Consensus 8 ~~~s~~v~~~~g~~v~LvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~~D~-pGl~~~~~~~~~~ 86 (356)
+++||+|.+ |++++|+|+||||||||+++|+|...+ ..|.|.++|.++..... ..+. .....+++
T Consensus 24 ~~vsl~i~~--Ge~~~i~G~nGsGKSTLl~~L~Gl~~p-----------~~G~i~~~g~~i~~~~~~~~~~-~~~~~ig~ 89 (286)
T PRK13646 24 HDVNTEFEQ--GKYYAIVGQTGSGKSTLIQNINALLKP-----------TTGTVTVDDITITHKTKDKYIR-PVRKRIGM 89 (286)
T ss_pred eeeEEEEcC--CCEEEEECCCCCCHHHHHHHHhcCCCC-----------CCcEEEECCEECccccccchHH-HHHhheEE
Confidence 689999999 889999999999999999999999876 89999999988743210 0110 11223455
Q ss_pred ccccc--ccc--cchhHHHHHHhc--CChHHHHHHHHHHHHHccC---ccccccCcccccceecccee---------eee
Q 018394 87 GRQVI--AVS--KSSDIVLMVLDA--SKSEGHRQILTKELEAVGL---RLNKRPPQIYFKKKKTGGIS---------FNS 148 (356)
Q Consensus 87 ~~~~~--~~~--~~~d~i~~v~d~--~~~~~~~~~i~~~L~~~~i---~l~~~~~~lS~g~~qr~~ia---------l~~ 148 (356)
.+|.. ..+ ...+.+.+.... .......+.+.++|+.+|+ ..++.+..||+||+||++|| +++
T Consensus 90 v~q~~~~~l~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGq~qrv~laraL~~~p~illl 169 (286)
T PRK13646 90 VFQFPESQLFEDTVEREIIFGPKNFKMNLDEVKNYAHRLLMDLGFSRDVMSQSPFQMSGGQMRKIAIVSILAMNPDIIVL 169 (286)
T ss_pred EecChHhccchhhHHHHHHhhHHHcCCCHHHHHHHHHHHHHHcCCChhhhhCCcccCCHHHHHHHHHHHHHHhCCCEEEE
Confidence 55532 112 223444332211 1222334567888999998 35688999999999999998 999
Q ss_pred cCCCCCCCHHHHHHH---HHHhcc--cCcEEEEccCCCHHHHHHHHhccccccceEEEeecCC
Q 018394 149 TLPLTHVDEKLCYQI---LHEYKI--HNAEVLFREDATVDDLIDVIEGNRKYMKCVYVYNKID 206 (356)
Q Consensus 149 DEp~~~LD~~~~~~i---l~~l~~--~~~~i~~thd~~~~~~~~~i~~~~~~~p~i~v~NK~D 206 (356)
||||++||+.....+ ++++.. +.|++++||+.+.... ....+++++..-
T Consensus 170 DEPt~~LD~~~~~~l~~~l~~l~~~~g~tvl~vtH~~~~~~~---------~~dri~~l~~G~ 223 (286)
T PRK13646 170 DEPTAGLDPQSKRQVMRLLKSLQTDENKTIILVSHDMNEVAR---------YADEVIVMKEGS 223 (286)
T ss_pred ECCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHH---------hCCEEEEEECCE
Confidence 999999999985554 444432 4599999999764321 235667776543
No 138
>PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.85 E-value=1e-20 Score=177.58 Aligned_cols=173 Identities=17% Similarity=0.181 Sum_probs=121.3
Q ss_pred CCCCeEEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCccccccccccccceEEEECCEeecccCccccccccccCcccc
Q 018394 8 AGEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRG 87 (356)
Q Consensus 8 ~~~s~~v~~~~g~~v~LvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~~D~pGl~~~~~~~~~~~ 87 (356)
.+++|++.+ |++++|+|+||||||||+++|+|...| ..|.+.++|.++...+...+ ...+++.
T Consensus 21 ~~vsl~i~~--Ge~~~i~G~NGsGKSTLl~~l~Gl~~p-----------~~G~i~~~g~~~~~~~~~~~----~~~i~~v 83 (277)
T PRK13652 21 NNINFIAPR--NSRIAVIGPNGAGKSTLFRHFNGILKP-----------TSGSVLIRGEPITKENIREV----RKFVGLV 83 (277)
T ss_pred eEeEEEEcC--CCEEEEECCCCCCHHHHHHHHhcCCCC-----------CceEEEECCEECCcCCHHHH----HhheEEE
Confidence 689999999 889999999999999999999999866 89999999987643222111 1223333
Q ss_pred cccc----ccccchhHHHHHHh--cCChHHHHHHHHHHHHHccC--ccccccCcccccceecccee---------eeecC
Q 018394 88 RQVI----AVSKSSDIVLMVLD--ASKSEGHRQILTKELEAVGL--RLNKRPPQIYFKKKKTGGIS---------FNSTL 150 (356)
Q Consensus 88 ~~~~----~~~~~~d~i~~v~d--~~~~~~~~~~i~~~L~~~~i--~l~~~~~~lS~g~~qr~~ia---------l~~DE 150 (356)
.|.. ....-.+.+.+... ........+.+.+.++.+++ .+++.+..||+||+||++++ +++||
T Consensus 84 ~q~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrl~laraL~~~p~llilDE 163 (277)
T PRK13652 84 FQNPDDQIFSPTVEQDIAFGPINLGLDEETVAHRVSSALHMLGLEELRDRVPHHLSGGEKKRVAIAGVIAMEPQVLVLDE 163 (277)
T ss_pred ecCcccccccccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHCCChhHhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEeC
Confidence 3332 11122344433221 12222334467888999999 67889999999999999998 99999
Q ss_pred CCCCCCHHHHHH---HHHHhcc--cCcEEEEccCCCHH-HHHHHHhccccccceEEEeecCCC
Q 018394 151 PLTHVDEKLCYQ---ILHEYKI--HNAEVLFREDATVD-DLIDVIEGNRKYMKCVYVYNKIDV 207 (356)
Q Consensus 151 p~~~LD~~~~~~---il~~l~~--~~~~i~~thd~~~~-~~~~~i~~~~~~~p~i~v~NK~Dl 207 (356)
||++||+..... +++++.. +.+++++||+.+.. +. +..+++++..-+
T Consensus 164 Pt~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~~~~~~~~----------~drv~~l~~G~i 216 (277)
T PRK13652 164 PTAGLDPQGVKELIDFLNDLPETYGMTVIFSTHQLDLVPEM----------ADYIYVMDKGRI 216 (277)
T ss_pred CcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHh----------CCEEEEEECCeE
Confidence 999999987554 4555543 45899999997653 23 356666665443
No 139
>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=99.85 E-value=9.8e-21 Score=175.46 Aligned_cols=160 Identities=21% Similarity=0.231 Sum_probs=112.4
Q ss_pred CCCCeEEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCccccccccccccceEEEECCEeecccCccccccccccCcccc
Q 018394 8 AGEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRG 87 (356)
Q Consensus 8 ~~~s~~v~~~~g~~v~LvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~~D~pGl~~~~~~~~~~~ 87 (356)
.+++|++.+ |+.++|+|+||||||||+++|+|...+ ..|.+.++|.++.-.+..... ..+.++.
T Consensus 22 ~~is~~i~~--Ge~~~l~G~nGsGKSTLl~~l~Gl~~~-----------~~G~i~~~g~~~~~~~~~~~~---~~~i~~~ 85 (255)
T PRK11300 22 NNVNLEVRE--QEIVSLIGPNGAGKTTVFNCLTGFYKP-----------TGGTILLRGQHIEGLPGHQIA---RMGVVRT 85 (255)
T ss_pred EeeeeEEcC--CeEEEEECCCCCCHHHHHHHHhCCcCC-----------CcceEEECCEECCCCCHHHHH---hcCeEEe
Confidence 588999999 889999999999999999999999766 799999999887543321111 1122323
Q ss_pred cccccccc---chhHHHHHHh----------cC-----Ch--HHHHHHHHHHHHHccC--ccccccCcccccceecccee
Q 018394 88 RQVIAVSK---SSDIVLMVLD----------AS-----KS--EGHRQILTKELEAVGL--RLNKRPPQIYFKKKKTGGIS 145 (356)
Q Consensus 88 ~~~~~~~~---~~d~i~~v~d----------~~-----~~--~~~~~~i~~~L~~~~i--~l~~~~~~lS~g~~qr~~ia 145 (356)
.|....+. ..+++.+... .. .. ....+.+.+.++.+++ .+++++..||+||+||+.||
T Consensus 86 ~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~la 165 (255)
T PRK11300 86 FQHVRLFREMTVIENLLVAQHQQLKTGLFSGLLKTPAFRRAESEALDRAATWLERVGLLEHANRQAGNLAYGQQRRLEIA 165 (255)
T ss_pred ccCcccCCCCcHHHHHHHhhhccccchhhhhhccccccccchhHHHHHHHHHHHhCChhhhhhCChhhCCHHHHHHHHHH
Confidence 33332222 2343332210 00 00 1123456778888998 67899999999999999998
Q ss_pred ---------eeecCCCCCCCHHHHHHH---HHHhcc--cCcEEEEccCCCHH
Q 018394 146 ---------FNSTLPLTHVDEKLCYQI---LHEYKI--HNAEVLFREDATVD 183 (356)
Q Consensus 146 ---------l~~DEp~~~LD~~~~~~i---l~~l~~--~~~~i~~thd~~~~ 183 (356)
+++||||++||+.....+ |..+.. +.+++++||+....
T Consensus 166 ~al~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~~~tii~~sH~~~~~ 217 (255)
T PRK11300 166 RCMVTQPEILMLDEPAAGLNPKETKELDELIAELRNEHNVTVLLIEHDMKLV 217 (255)
T ss_pred HHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHhhcCCEEEEEeCCHHHH
Confidence 999999999999885554 444433 45899999997643
No 140
>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein. This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters.
Probab=99.85 E-value=1.4e-20 Score=173.67 Aligned_cols=180 Identities=16% Similarity=0.104 Sum_probs=120.0
Q ss_pred CCCCeEEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCccccccccccccceEEEECCEeecccCccccccccccCcccc
Q 018394 8 AGEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRG 87 (356)
Q Consensus 8 ~~~s~~v~~~~g~~v~LvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~~D~pGl~~~~~~~~~~~ 87 (356)
.++||++.+ |++++|+|+||||||||+++|+|...|.. . -+..|.+.++|.++.... ... ......+++.
T Consensus 18 ~~vs~~i~~--Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~---~---~~~~G~i~~~g~~~~~~~-~~~-~~~~~~i~~v 87 (247)
T TIGR00972 18 KNINLDIPK--NQVTALIGPSGCGKSTLLRSLNRMNDLVP---G---VRIEGKVLFDGQDIYDKK-IDV-VELRRRVGMV 87 (247)
T ss_pred cceeEEECC--CCEEEEECCCCCCHHHHHHHHhccCCCCc---C---CCCceEEEECCEEccccc-cch-HHHHhheEEE
Confidence 689999999 88999999999999999999999986500 0 012899999998764211 000 0112234444
Q ss_pred ccccccc--cchhHHHHHHhcC---ChHHHHHHHHHHHHHccCc------cccccCcccccceecccee---------ee
Q 018394 88 RQVIAVS--KSSDIVLMVLDAS---KSEGHRQILTKELEAVGLR------LNKRPPQIYFKKKKTGGIS---------FN 147 (356)
Q Consensus 88 ~~~~~~~--~~~d~i~~v~d~~---~~~~~~~~i~~~L~~~~i~------l~~~~~~lS~g~~qr~~ia---------l~ 147 (356)
.|....+ ...+.+.+..... ......+.+.+.++.+++. +++.+..||+||+||+.+| ++
T Consensus 88 ~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgG~~qrv~laral~~~p~lll 167 (247)
T TIGR00972 88 FQKPNPFPMSIYDNIAYGPRLHGIKDKKELDEIVEESLKKAALWDEVKDRLHDSALGLSGGQQQRLCIARALAVEPEVLL 167 (247)
T ss_pred ecCcccCCCCHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhHhhCCcccCCHHHHHHHHHHHHHhcCCCEEE
Confidence 4433222 2244444332222 1222345677888888873 5678899999999999988 99
Q ss_pred ecCCCCCCCHHHHHHH---HHHhcccCcEEEEccCCCHHHHHHHHhccccccceEEEeecCC
Q 018394 148 STLPLTHVDEKLCYQI---LHEYKIHNAEVLFREDATVDDLIDVIEGNRKYMKCVYVYNKID 206 (356)
Q Consensus 148 ~DEp~~~LD~~~~~~i---l~~l~~~~~~i~~thd~~~~~~~~~i~~~~~~~p~i~v~NK~D 206 (356)
+||||++||+.....+ ++.+....+++++||+...... .+..+++++..-
T Consensus 168 lDEPt~~LD~~~~~~l~~~l~~~~~~~tiiivsH~~~~~~~---------~~d~i~~l~~G~ 220 (247)
T TIGR00972 168 LDEPTSALDPIATGKIEELIQELKKKYTIVIVTHNMQQAAR---------ISDRTAFFYDGE 220 (247)
T ss_pred EeCCcccCCHHHHHHHHHHHHHHHhcCeEEEEecCHHHHHH---------hCCEEEEEECCE
Confidence 9999999999875544 4444444689999999764321 135566666543
No 141
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.84 E-value=7.5e-21 Score=170.60 Aligned_cols=159 Identities=15% Similarity=0.145 Sum_probs=113.4
Q ss_pred CCCCeEEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCccccccccccccceEEEECCEeecccCccccccccccCcccc
Q 018394 8 AGEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRG 87 (356)
Q Consensus 8 ~~~s~~v~~~~g~~v~LvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~~D~pGl~~~~~~~~~~~ 87 (356)
.+++|++.+ |++++|+|+||||||||+++|+|...+ ..|.+.++|.++.... .. .....++.
T Consensus 18 ~~vs~~i~~--Ge~~~l~G~nGsGKSTLl~~l~G~~~p-----------~~G~v~~~g~~~~~~~-~~----~~~~~~~~ 79 (204)
T PRK13538 18 SGLSFTLNA--GELVQIEGPNGAGKTSLLRILAGLARP-----------DAGEVLWQGEPIRRQR-DE----YHQDLLYL 79 (204)
T ss_pred ecceEEECC--CcEEEEECCCCCCHHHHHHHHhCCCCC-----------CCcEEEECCEEcccch-HH----hhhheEEe
Confidence 589999999 889999999999999999999999876 7899999998764221 10 11122222
Q ss_pred ccccccc---cchhHHHHHHhcCChHHHHHHHHHHHHHccC--ccccccCcccccceecccee---------eeecCCCC
Q 018394 88 RQVIAVS---KSSDIVLMVLDASKSEGHRQILTKELEAVGL--RLNKRPPQIYFKKKKTGGIS---------FNSTLPLT 153 (356)
Q Consensus 88 ~~~~~~~---~~~d~i~~v~d~~~~~~~~~~i~~~L~~~~i--~l~~~~~~lS~g~~qr~~ia---------l~~DEp~~ 153 (356)
.+....+ ...+.+.+....... ...+.+.+.++.+++ ..++++..||+|++||++++ +++||||+
T Consensus 80 ~~~~~~~~~~tv~e~l~~~~~~~~~-~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~ 158 (204)
T PRK13538 80 GHQPGIKTELTALENLRFYQRLHGP-GDDEALWEALAQVGLAGFEDVPVRQLSAGQQRRVALARLWLTRAPLWILDEPFT 158 (204)
T ss_pred CCccccCcCCcHHHHHHHHHHhcCc-cHHHHHHHHHHHcCCHHHhhCChhhcCHHHHHHHHHHHHHhcCCCEEEEeCCCc
Confidence 2222222 223444333222111 234567888999999 57888999999999999988 99999999
Q ss_pred CCCHHHHHHH---HHHhcc-cCcEEEEccCCCHHHH
Q 018394 154 HVDEKLCYQI---LHEYKI-HNAEVLFREDATVDDL 185 (356)
Q Consensus 154 ~LD~~~~~~i---l~~l~~-~~~~i~~thd~~~~~~ 185 (356)
+||+.....+ |+++.. +.+++++||+.+..+.
T Consensus 159 ~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~i~~ 194 (204)
T PRK13538 159 AIDKQGVARLEALLAQHAEQGGMVILTTHQDLPVAS 194 (204)
T ss_pred cCCHHHHHHHHHHHHHHHHCCCEEEEEecChhhhcc
Confidence 9999885554 444432 4599999999765543
No 142
>TIGR02769 nickel_nikE nickel import ATP-binding protein NikE. This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase.
Probab=99.84 E-value=1.2e-20 Score=176.07 Aligned_cols=177 Identities=20% Similarity=0.207 Sum_probs=121.7
Q ss_pred CCCCeEEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCccccccccccccceEEEECCEeecccCccccccccccCcccc
Q 018394 8 AGEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRG 87 (356)
Q Consensus 8 ~~~s~~v~~~~g~~v~LvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~~D~pGl~~~~~~~~~~~ 87 (356)
.++||++.+ |++++|+|+|||||||||++|+|...+ ..|.+.++|.++.-.+..... .....+++.
T Consensus 28 ~~isl~i~~--Ge~~~i~G~nGsGKSTLl~~l~Gl~~p-----------~~G~i~~~g~~i~~~~~~~~~-~~~~~i~~v 93 (265)
T TIGR02769 28 TNVSLSIEE--GETVGLLGRSGCGKSTLARLLLGLEKP-----------AQGTVSFRGQDLYQLDRKQRR-AFRRDVQLV 93 (265)
T ss_pred eCceeEEcC--CCEEEEECCCCCCHHHHHHHHhCCCCC-----------CCcEEEECCEEccccCHHHHH-HHhhceEEE
Confidence 589999999 889999999999999999999999866 799999999876533221100 011233444
Q ss_pred cccc--cc---ccchhHHHHHHhc---CChHHHHHHHHHHHHHccC---ccccccCcccccceecccee---------ee
Q 018394 88 RQVI--AV---SKSSDIVLMVLDA---SKSEGHRQILTKELEAVGL---RLNKRPPQIYFKKKKTGGIS---------FN 147 (356)
Q Consensus 88 ~~~~--~~---~~~~d~i~~v~d~---~~~~~~~~~i~~~L~~~~i---~l~~~~~~lS~g~~qr~~ia---------l~ 147 (356)
.|.. .. ....+.+.+.... .......+.+.+.++.+++ .+++++..||+||+||+++| ++
T Consensus 94 ~q~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGe~qrv~laral~~~p~ill 173 (265)
T TIGR02769 94 FQDSPSAVNPRMTVRQIIGEPLRHLTSLDESEQKARIAELLDMVGLRSEDADKLPRQLSGGQLQRINIARALAVKPKLIV 173 (265)
T ss_pred ecChhhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEE
Confidence 4432 11 1223444332221 1222334567888999998 35788999999999999998 99
Q ss_pred ecCCCCCCCHHHHH---HHHHHhcc--cCcEEEEccCCCHHHHHHHHhccccccceEEEeecCCC
Q 018394 148 STLPLTHVDEKLCY---QILHEYKI--HNAEVLFREDATVDDLIDVIEGNRKYMKCVYVYNKIDV 207 (356)
Q Consensus 148 ~DEp~~~LD~~~~~---~il~~l~~--~~~~i~~thd~~~~~~~~~i~~~~~~~p~i~v~NK~Dl 207 (356)
+||||++||+.... ++|.++.. +.++|++||+...... .+..++++++..+
T Consensus 174 LDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiiivsH~~~~~~~---------~~d~i~~l~~G~i 229 (265)
T TIGR02769 174 LDEAVSNLDMVLQAVILELLRKLQQAFGTAYLFITHDLRLVQS---------FCQRVAVMDKGQI 229 (265)
T ss_pred EeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHH---------HhcEEEEEeCCEE
Confidence 99999999998744 45555443 4599999999764431 1356677766544
No 143
>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.84 E-value=1.7e-20 Score=175.54 Aligned_cols=161 Identities=14% Similarity=0.115 Sum_probs=112.6
Q ss_pred CCCCeEEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCccccccccccccceEEEECCEeecccCccccccccccCcccc
Q 018394 8 AGEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRG 87 (356)
Q Consensus 8 ~~~s~~v~~~~g~~v~LvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~~D~pGl~~~~~~~~~~~ 87 (356)
.++||++.+ |++++|+|+|||||||||++|+|...| ..|.|.++|.++...+.+ .. .....+++.
T Consensus 18 ~~isl~i~~--Ge~~~i~G~nGsGKSTLl~~l~Gl~~p-----------~~G~i~~~g~~i~~~~~~-~~-~~~~~i~~v 82 (271)
T PRK13638 18 KGLNLDFSL--SPVTGLVGANGCGKSTLFMNLSGLLRP-----------QKGAVLWQGKPLDYSKRG-LL-ALRQQVATV 82 (271)
T ss_pred cceEEEEcC--CCEEEEECCCCCCHHHHHHHHcCCCCC-----------CccEEEECCEEcccccCC-HH-HHHhheEEE
Confidence 689999999 889999999999999999999999876 899999999987421111 00 011223444
Q ss_pred ccccc--cc--cchhHHHHHHhcC--ChHHHHHHHHHHHHHccC--ccccccCcccccceecccee---------eeecC
Q 018394 88 RQVIA--VS--KSSDIVLMVLDAS--KSEGHRQILTKELEAVGL--RLNKRPPQIYFKKKKTGGIS---------FNSTL 150 (356)
Q Consensus 88 ~~~~~--~~--~~~d~i~~v~d~~--~~~~~~~~i~~~L~~~~i--~l~~~~~~lS~g~~qr~~ia---------l~~DE 150 (356)
.|... .+ ...+.+.+..... ......+.+.+.++.+++ ..++++..||+||+||+++| +++||
T Consensus 83 ~q~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrl~laraL~~~p~lllLDE 162 (271)
T PRK13638 83 FQDPEQQIFYTDIDSDIAFSLRNLGVPEAEITRRVDEALTLVDAQHFRHQPIQCLSHGQKKRVAIAGALVLQARYLLLDE 162 (271)
T ss_pred eeChhhccccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHhHhcCCchhCCHHHHHHHHHHHHHHcCCCEEEEeC
Confidence 44321 11 1123333322211 222233456788899998 67888999999999999998 99999
Q ss_pred CCCCCCHHHHHHH---HHHhcc-cCcEEEEccCCCHH
Q 018394 151 PLTHVDEKLCYQI---LHEYKI-HNAEVLFREDATVD 183 (356)
Q Consensus 151 p~~~LD~~~~~~i---l~~l~~-~~~~i~~thd~~~~ 183 (356)
||++||+.....+ |..+.. +.++|++||+....
T Consensus 163 Pt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~ 199 (271)
T PRK13638 163 PTAGLDPAGRTQMIAIIRRIVAQGNHVIISSHDIDLI 199 (271)
T ss_pred CcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHH
Confidence 9999999885544 444432 45899999997643
No 144
>PRK11124 artP arginine transporter ATP-binding subunit; Provisional
Probab=99.84 E-value=1.4e-20 Score=173.06 Aligned_cols=163 Identities=16% Similarity=0.168 Sum_probs=113.6
Q ss_pred CCCCeEEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCccccccccccccceEEEECCEeecccCccc--cccccccCcc
Q 018394 8 AGEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPG--IIEGASEGKG 85 (356)
Q Consensus 8 ~~~s~~v~~~~g~~v~LvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~~D~pG--l~~~~~~~~~ 85 (356)
.+++|++.+ |++++|+|+||||||||+++|+|...+ ..|.+.++|.++....... -.......++
T Consensus 19 ~~vsl~i~~--Ge~~~i~G~nGsGKSTLl~~l~G~~~~-----------~~G~i~~~g~~~~~~~~~~~~~~~~~~~~i~ 85 (242)
T PRK11124 19 FDITLDCPQ--GETLVLLGPSGAGKSSLLRVLNLLEMP-----------RSGTLNIAGNHFDFSKTPSDKAIRELRRNVG 85 (242)
T ss_pred eeeeeEEcC--CCEEEEECCCCCCHHHHHHHHhCCCCC-----------CceEEEECCEecccccccchhhHHHHHhheE
Confidence 588999999 889999999999999999999999866 7899999998763211000 0001112334
Q ss_pred ccccccccccc---hhHHHH-HHhc--CChHHHHHHHHHHHHHccC--ccccccCcccccceecccee---------eee
Q 018394 86 RGRQVIAVSKS---SDIVLM-VLDA--SKSEGHRQILTKELEAVGL--RLNKRPPQIYFKKKKTGGIS---------FNS 148 (356)
Q Consensus 86 ~~~~~~~~~~~---~d~i~~-v~d~--~~~~~~~~~i~~~L~~~~i--~l~~~~~~lS~g~~qr~~ia---------l~~ 148 (356)
+..|....+.. .+.+.+ .... .........+.+.++.+|+ .+++.+..||+||+||++++ +++
T Consensus 86 ~~~q~~~~~~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~laral~~~p~llil 165 (242)
T PRK11124 86 MVFQQYNLWPHLTVQQNLIEAPCRVLGLSKDQALARAEKLLERLRLKPYADRFPLHLSGGQQQRVAIARALMMEPQVLLF 165 (242)
T ss_pred EEecCccccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 44444333332 344322 1111 1122223457788899999 67888999999999999988 899
Q ss_pred cCCCCCCCHHHHHHH---HHHhcc-cCcEEEEccCCCHH
Q 018394 149 TLPLTHVDEKLCYQI---LHEYKI-HNAEVLFREDATVD 183 (356)
Q Consensus 149 DEp~~~LD~~~~~~i---l~~l~~-~~~~i~~thd~~~~ 183 (356)
||||++||+.....+ ++.+.. +.+++++||+....
T Consensus 166 DEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~ 204 (242)
T PRK11124 166 DEPTAALDPEITAQIVSIIRELAETGITQVIVTHEVEVA 204 (242)
T ss_pred cCCCCcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHH
Confidence 999999999885554 444433 46899999997643
No 145
>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed
Probab=99.84 E-value=1.5e-20 Score=172.65 Aligned_cols=161 Identities=16% Similarity=0.168 Sum_probs=113.7
Q ss_pred CCCCeEEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCccccccccccccceEEEECCEeecccCccccccccccCcccc
Q 018394 8 AGEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRG 87 (356)
Q Consensus 8 ~~~s~~v~~~~g~~v~LvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~~D~pGl~~~~~~~~~~~ 87 (356)
+++||++.+ |++++|+|+||||||||+++|+|...+ ..|.+.++|.++.....+. .......++.
T Consensus 18 ~~~s~~i~~--Ge~~~l~G~nGsGKSTLl~~l~G~~~~-----------~~G~i~~~g~~~~~~~~~~--~~~~~~i~~~ 82 (240)
T PRK09493 18 HNIDLNIDQ--GEVVVIIGPSGSGKSTLLRCINKLEEI-----------TSGDLIVDGLKVNDPKVDE--RLIRQEAGMV 82 (240)
T ss_pred eeeeEEEcC--CcEEEEECCCCCCHHHHHHHHhCCCCC-----------CceEEEECCEECCcCChhH--HHHhhceEEE
Confidence 588999999 889999999999999999999999866 7999999998764321100 0111223344
Q ss_pred cccccccc---chhHHHHHH-hc--CChHHHHHHHHHHHHHccC--ccccccCcccccceecccee---------eeecC
Q 018394 88 RQVIAVSK---SSDIVLMVL-DA--SKSEGHRQILTKELEAVGL--RLNKRPPQIYFKKKKTGGIS---------FNSTL 150 (356)
Q Consensus 88 ~~~~~~~~---~~d~i~~v~-d~--~~~~~~~~~i~~~L~~~~i--~l~~~~~~lS~g~~qr~~ia---------l~~DE 150 (356)
.|....+. ..+.+.+.. .. .......+.+.+.++.+++ .+++.+..||+||+||+++| +++||
T Consensus 83 ~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDE 162 (240)
T PRK09493 83 FQQFYLFPHLTALENVMFGPLRVRGASKEEAEKQARELLAKVGLAERAHHYPSELSGGQQQRVAIARALAVKPKLMLFDE 162 (240)
T ss_pred ecccccCCCCcHHHHHHhHHHHhcCCCHHHHHHHHHHHHHHcCChHHHhcChhhcCHHHHHHHHHHHHHhcCCCEEEEcC
Confidence 44332222 234443321 11 1222234567788999998 57888999999999999988 99999
Q ss_pred CCCCCCHHHHHH---HHHHhcc-cCcEEEEccCCCHH
Q 018394 151 PLTHVDEKLCYQ---ILHEYKI-HNAEVLFREDATVD 183 (356)
Q Consensus 151 p~~~LD~~~~~~---il~~l~~-~~~~i~~thd~~~~ 183 (356)
||++||+..... +++.+.. +.+++++||+....
T Consensus 163 P~~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~ 199 (240)
T PRK09493 163 PTSALDPELRHEVLKVMQDLAEEGMTMVIVTHEIGFA 199 (240)
T ss_pred CcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHH
Confidence 999999988554 4444443 45899999997653
No 146
>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.84 E-value=1.3e-20 Score=173.50 Aligned_cols=173 Identities=17% Similarity=0.169 Sum_probs=119.9
Q ss_pred CCCCeEEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCccccccccccccceEEEECCEeecccCccccccccccCcccc
Q 018394 8 AGEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRG 87 (356)
Q Consensus 8 ~~~s~~v~~~~g~~v~LvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~~D~pGl~~~~~~~~~~~ 87 (356)
.++||++.+ |++++|+|+||||||||+++|+|...+ ..|.+.++|.++...+..- .....++.
T Consensus 18 ~~is~~i~~--Ge~~~i~G~nGsGKSTLl~~l~G~~~~-----------~~G~i~~~g~~~~~~~~~~----~~~~i~~~ 80 (242)
T cd03295 18 NNLNLEIAK--GEFLVLIGPSGSGKTTTMKMINRLIEP-----------TSGEIFIDGEDIREQDPVE----LRRKIGYV 80 (242)
T ss_pred eeeEEEECC--CCEEEEECCCCCCHHHHHHHHhcCCCC-----------CCceEEECCeEcCcCChHH----hhcceEEE
Confidence 588999999 889999999999999999999999866 7899999998765332211 11223444
Q ss_pred ccccccccc---hhHHHHHHhc--CChHHHHHHHHHHHHHccCc----cccccCcccccceecccee---------eeec
Q 018394 88 RQVIAVSKS---SDIVLMVLDA--SKSEGHRQILTKELEAVGLR----LNKRPPQIYFKKKKTGGIS---------FNST 149 (356)
Q Consensus 88 ~~~~~~~~~---~d~i~~v~d~--~~~~~~~~~i~~~L~~~~i~----l~~~~~~lS~g~~qr~~ia---------l~~D 149 (356)
.|....+.. .+.+.+.... .......+.+.+.++.+++. .++.+.+||+||+||+++| +++|
T Consensus 81 ~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~LS~G~~qrv~laral~~~p~llllD 160 (242)
T cd03295 81 IQQIGLFPHMTVEENIALVPKLLKWPKEKIRERADELLALVGLDPAEFADRYPHELSGGQQQRVGVARALAADPPLLLMD 160 (242)
T ss_pred ccCccccCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCCcHHHHhcChhhCCHHHHHHHHHHHHHhcCCCEEEec
Confidence 443333322 3444332221 12223345677889998883 4778899999999999998 9999
Q ss_pred CCCCCCCHHHHHHH---HHHhcc--cCcEEEEccCCCHHHHHHHHhccccccceEEEeecCC
Q 018394 150 LPLTHVDEKLCYQI---LHEYKI--HNAEVLFREDATVDDLIDVIEGNRKYMKCVYVYNKID 206 (356)
Q Consensus 150 Ep~~~LD~~~~~~i---l~~l~~--~~~~i~~thd~~~~~~~~~i~~~~~~~p~i~v~NK~D 206 (356)
|||++||+.....+ |.++.. +.++|++||+...... .+..+++++..-
T Consensus 161 EPt~~LD~~~~~~l~~~L~~~~~~~g~tvii~sH~~~~~~~---------~~d~i~~l~~G~ 213 (242)
T cd03295 161 EPFGALDPITRDQLQEEFKRLQQELGKTIVFVTHDIDEAFR---------LADRIAIMKNGE 213 (242)
T ss_pred CCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHHHHHH---------hCCEEEEEECCE
Confidence 99999999885554 444432 4589999999753221 135566666543
No 147
>PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.84 E-value=7e-21 Score=178.90 Aligned_cols=172 Identities=22% Similarity=0.169 Sum_probs=122.2
Q ss_pred CCCCeEEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCccccccccccccceEEEECCEeecccCccccccccccCcccc
Q 018394 8 AGEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRG 87 (356)
Q Consensus 8 ~~~s~~v~~~~g~~v~LvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~~D~pGl~~~~~~~~~~~ 87 (356)
.+++|++.+ |++++|+|+||||||||+++|+|...| ..|.|.++|.++.-.+... ....+++.
T Consensus 24 ~~vsl~i~~--Ge~~~i~G~nGaGKSTLl~~i~G~~~p-----------~~G~i~~~g~~i~~~~~~~----~~~~i~~~ 86 (279)
T PRK13635 24 KDVSFSVYE--GEWVAIVGHNGSGKSTLAKLLNGLLLP-----------EAGTITVGGMVLSEETVWD----VRRQVGMV 86 (279)
T ss_pred eeeEEEEcC--CCEEEEECCCCCcHHHHHHHHhcCCCC-----------CCcEEEECCEECCcCcHHH----HhhheEEE
Confidence 689999999 889999999999999999999999876 8999999999874322111 11234444
Q ss_pred ccccc-cc---cchhHHHHHHhc--CChHHHHHHHHHHHHHccC--ccccccCcccccceecccee---------eeecC
Q 018394 88 RQVIA-VS---KSSDIVLMVLDA--SKSEGHRQILTKELEAVGL--RLNKRPPQIYFKKKKTGGIS---------FNSTL 150 (356)
Q Consensus 88 ~~~~~-~~---~~~d~i~~v~d~--~~~~~~~~~i~~~L~~~~i--~l~~~~~~lS~g~~qr~~ia---------l~~DE 150 (356)
.|... .+ .-.+.+.+.... .......+.+.++|+.+++ .+++.+..||+||+||++|+ +++||
T Consensus 87 ~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDE 166 (279)
T PRK13635 87 FQNPDNQFVGATVQDDVAFGLENIGVPREEMVERVDQALRQVGMEDFLNREPHRLSGGQKQRVAIAGVLALQPDIIILDE 166 (279)
T ss_pred EeCHHHhcccccHHHHHhhhHhhCCCCHHHHHHHHHHHHHHcCChhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeC
Confidence 44321 11 224444332221 1222334567888999999 78889999999999999998 99999
Q ss_pred CCCCCCHHHHHHHHH---Hhcc--cCcEEEEccCCCHHHHHHHHhccccccceEEEeecCC
Q 018394 151 PLTHVDEKLCYQILH---EYKI--HNAEVLFREDATVDDLIDVIEGNRKYMKCVYVYNKID 206 (356)
Q Consensus 151 p~~~LD~~~~~~il~---~l~~--~~~~i~~thd~~~~~~~~~i~~~~~~~p~i~v~NK~D 206 (356)
||++||+.....+++ .+.. +.+++++||+...... +..+++++..-
T Consensus 167 Pt~gLD~~~~~~l~~~l~~l~~~~~~tilivsH~~~~~~~----------~d~i~~l~~G~ 217 (279)
T PRK13635 167 ATSMLDPRGRREVLETVRQLKEQKGITVLSITHDLDEAAQ----------ADRVIVMNKGE 217 (279)
T ss_pred CcccCCHHHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHc----------CCEEEEEECCE
Confidence 999999998655544 4443 4589999999764322 35566666543
No 148
>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional
Probab=99.84 E-value=1.3e-20 Score=172.28 Aligned_cols=157 Identities=17% Similarity=0.189 Sum_probs=113.1
Q ss_pred CCCCeEEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCccccccccccccceEEEECCEeecccCccccccccccCcccc
Q 018394 8 AGEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRG 87 (356)
Q Consensus 8 ~~~s~~v~~~~g~~v~LvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~~D~pGl~~~~~~~~~~~ 87 (356)
.++||++.+ |++++|+|+||||||||+++|+|...+ ..|.+.++|.++...+.. ....++.
T Consensus 16 ~~is~~i~~--Ge~~~l~G~nGsGKSTLl~~l~Gl~~~-----------~~G~i~~~g~~~~~~~~~------~~~i~~~ 76 (232)
T PRK10771 16 MRFDLTVER--GERVAILGPSGAGKSTLLNLIAGFLTP-----------ASGSLTLNGQDHTTTPPS------RRPVSML 76 (232)
T ss_pred ceeEEEEcC--CCEEEEECCCCCCHHHHHHHHhCCCCC-----------CCceEEECCeecCcCChh------hccEEEE
Confidence 378999998 889999999999999999999999876 789999999876432211 1123333
Q ss_pred ccccccccc---hhHHHHHHhcC-C-hHHHHHHHHHHHHHccC--ccccccCcccccceecccee---------eeecCC
Q 018394 88 RQVIAVSKS---SDIVLMVLDAS-K-SEGHRQILTKELEAVGL--RLNKRPPQIYFKKKKTGGIS---------FNSTLP 151 (356)
Q Consensus 88 ~~~~~~~~~---~d~i~~v~d~~-~-~~~~~~~i~~~L~~~~i--~l~~~~~~lS~g~~qr~~ia---------l~~DEp 151 (356)
.|....+.. .+.+.+..... . .....+.+.+.++.+++ .+++.+..||+||+||+.++ +++|||
T Consensus 77 ~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEP 156 (232)
T PRK10771 77 FQENNLFSHLTVAQNIGLGLNPGLKLNAAQREKLHAIARQMGIEDLLARLPGQLSGGQRQRVALARCLVREQPILLLDEP 156 (232)
T ss_pred ecccccccCCcHHHHHhcccccccCCCHHHHHHHHHHHHHcCcHHHHhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCC
Confidence 443333322 34443222111 1 12234567888999999 68899999999999999988 999999
Q ss_pred CCCCCHHHHHHH---HHHhcc--cCcEEEEccCCCHH
Q 018394 152 LTHVDEKLCYQI---LHEYKI--HNAEVLFREDATVD 183 (356)
Q Consensus 152 ~~~LD~~~~~~i---l~~l~~--~~~~i~~thd~~~~ 183 (356)
|++||+.....+ |.++.. +.++|++||+....
T Consensus 157 ~~gLD~~~~~~~~~~l~~~~~~~~~tiii~sH~~~~~ 193 (232)
T PRK10771 157 FSALDPALRQEMLTLVSQVCQERQLTLLMVSHSLEDA 193 (232)
T ss_pred cccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHH
Confidence 999999885544 444432 45899999997643
No 149
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=99.84 E-value=1.4e-20 Score=186.94 Aligned_cols=179 Identities=20% Similarity=0.238 Sum_probs=127.9
Q ss_pred CCCCeEEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCccccccccccccceEEEECCEeecccCccccccccccCcccc
Q 018394 8 AGEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRG 87 (356)
Q Consensus 8 ~~~s~~v~~~~g~~v~LvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~~D~pGl~~~~~~~~~~~ 87 (356)
.++||++.+ |+++||||.+|||||||.++|+|+..| ..|.+.++|.++. +. .+-.......+.++
T Consensus 308 ~~VSf~l~~--GE~lglVGeSGsGKSTlar~i~gL~~P-----------~~G~i~~~g~~~~-~~-~~~~~~~r~~~Qmv 372 (539)
T COG1123 308 DDVSFDLRE--GETLGLVGESGSGKSTLARILAGLLPP-----------SSGSIIFDGQDLD-LT-GGELRRLRRRIQMV 372 (539)
T ss_pred eeeeeEecC--CCEEEEECCCCCCHHHHHHHHhCCCCC-----------CCceEEEeCcccc-cc-cchhhhhhhheEEE
Confidence 589999999 889999999999999999999999877 8999999998722 22 22111112223344
Q ss_pred ccccc--cccc---hhHHHHHHhcCC---hHHHHHHHHHHHHHccC---ccccccCcccccceecccee---------ee
Q 018394 88 RQVIA--VSKS---SDIVLMVLDASK---SEGHRQILTKELEAVGL---RLNKRPPQIYFKKKKTGGIS---------FN 147 (356)
Q Consensus 88 ~~~~~--~~~~---~d~i~~v~d~~~---~~~~~~~i~~~L~~~~i---~l~~~~~~lS~g~~qr~~ia---------l~ 147 (356)
+|... ..+. -+.+...+.... ..+..+++.++|+.+++ .++++|.+|||||+||++|| ++
T Consensus 373 FQdp~~SLnPr~tV~~~i~epL~~~~~~~~~~~~~rv~~ll~~VgL~~~~l~ryP~elSGGQrQRvaIARALa~~P~lli 452 (539)
T COG1123 373 FQDPYSSLNPRMTVGDILAEPLRIHGGGSGAERRARVAELLELVGLPPEFLDRYPHELSGGQRQRVAIARALALEPKLLI 452 (539)
T ss_pred EeCcccccCccccHHHHHHhHHhhhcccchHHHHHHHHHHHHHcCCCHHHHhcCchhcCcchhHHHHHHHHHhcCCCEEE
Confidence 44332 1122 233322222211 23344578899999999 69999999999999999998 99
Q ss_pred ecCCCCCCCHHHHHHHHHHh---c--ccCcEEEEccCCCHHHHHHHHhccccccceEEEeecCCCCCh
Q 018394 148 STLPLTHVDEKLCYQILHEY---K--IHNAEVLFREDATVDDLIDVIEGNRKYMKCVYVYNKIDVIGI 210 (356)
Q Consensus 148 ~DEp~~~LD~~~~~~il~~l---~--~~~~~i~~thd~~~~~~~~~i~~~~~~~p~i~v~NK~Dl~~~ 210 (356)
+||||+.||+....++++.+ + .+-+.+++|||+.+.+.+ +..++|+...-+...
T Consensus 453 ~DEp~SaLDvsvqa~VlnLl~~lq~e~g~t~lfISHDl~vV~~i---------~drv~vm~~G~iVE~ 511 (539)
T COG1123 453 LDEPVSALDVSVQAQVLNLLKDLQEELGLTYLFISHDLAVVRYI---------ADRVAVMYDGRIVEE 511 (539)
T ss_pred ecCCccccCHHHHHHHHHHHHHHHHHhCCEEEEEeCCHHHHHhh---------CceEEEEECCeEEEe
Confidence 99999999998765555544 4 245999999998765432 477888887766533
No 150
>TIGR03156 GTP_HflX GTP-binding protein HflX. This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like).
Probab=99.84 E-value=1.8e-21 Score=188.05 Aligned_cols=160 Identities=29% Similarity=0.409 Sum_probs=112.5
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHcCCCCccccccccccccceEEEE-CCEeecccCcccccccc-ccCcccccccccccc
Q 018394 18 GHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHY-NDTKIQLLDLPGIIEGA-SEGKGRGRQVIAVSK 95 (356)
Q Consensus 18 ~g~~v~LvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~-~g~~i~~~D~pGl~~~~-~~~~~~~~~~~~~~~ 95 (356)
+...|+|+|.||||||||||+|++....++++||||+|+..+.+.+ +|.++.++||||+.... ..........+..+.
T Consensus 188 ~~~~ValvG~~NvGKSSLln~L~~~~~~v~~~~~tT~d~~~~~i~~~~~~~i~l~DT~G~~~~l~~~lie~f~~tle~~~ 267 (351)
T TIGR03156 188 DVPTVALVGYTNAGKSTLFNALTGADVYAADQLFATLDPTTRRLDLPDGGEVLLTDTVGFIRDLPHELVAAFRATLEEVR 267 (351)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCceeeccCCccccCCEEEEEEeCCCceEEEEecCcccccCCHHHHHHHHHHHHHHH
Confidence 3579999999999999999999999877899999999999999999 67899999999985421 111111122233456
Q ss_pred chhHHHHHHhcCChHHHHHHHHHHHHHccCccccccCcccccceeccceeeeecCCCCCCCHHHHHHHHHHhcccCcEEE
Q 018394 96 SSDIVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNAEVL 175 (356)
Q Consensus 96 ~~d~i~~v~d~~~~~~~~~~i~~~L~~~~i~l~~~~~~lS~g~~qr~~ial~~DEp~~~LD~~~~~~il~~l~~~~~~i~ 175 (356)
++|++++|+|++.+....+ +. .+.++++.+.
T Consensus 268 ~ADlil~VvD~s~~~~~~~-~~-----------------------------------------~~~~~L~~l~------- 298 (351)
T TIGR03156 268 EADLLLHVVDASDPDREEQ-IE-----------------------------------------AVEKVLEELG------- 298 (351)
T ss_pred hCCEEEEEEECCCCchHHH-HH-----------------------------------------HHHHHHHHhc-------
Confidence 7888888888775432111 10 0111121111
Q ss_pred EccCCCHHHHHHHHhccccccceEEEeecCCCCChhhHHHHhc-CCCEEEeccccccchHHHHHHHHHH
Q 018394 176 FREDATVDDLIDVIEGNRKYMKCVYVYNKIDVIGIDDVDKLAR-QPNSVVISCNLKLNLDRLLARMWEE 243 (356)
Q Consensus 176 ~thd~~~~~~~~~i~~~~~~~p~i~v~NK~Dl~~~~~~~~l~~-~~~~i~iSa~~~~~l~~L~~~i~~~ 243 (356)
...+|+++|+||+|+...+.+..+.. .++++++||++|.|+++|.+.|.+.
T Consensus 299 -----------------~~~~piIlV~NK~Dl~~~~~v~~~~~~~~~~i~iSAktg~GI~eL~~~I~~~ 350 (351)
T TIGR03156 299 -----------------AEDIPQLLVYNKIDLLDEPRIERLEEGYPEAVFVSAKTGEGLDLLLEAIAER 350 (351)
T ss_pred -----------------cCCCCEEEEEEeecCCChHhHHHHHhCCCCEEEEEccCCCCHHHHHHHHHhh
Confidence 11369999999999986554443322 2458999999999999999988764
No 151
>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional
Probab=99.84 E-value=1.4e-20 Score=173.09 Aligned_cols=158 Identities=18% Similarity=0.205 Sum_probs=113.6
Q ss_pred CCCCeEEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCccccccccccccceEEEECCEeecccCccccccccccCcccc
Q 018394 8 AGEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRG 87 (356)
Q Consensus 8 ~~~s~~v~~~~g~~v~LvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~~D~pGl~~~~~~~~~~~ 87 (356)
.++||++.+ |++++|+|+|||||||||++|+|...+ ..|.+.++|.++...+... .....+++.
T Consensus 20 ~~~sl~i~~--Ge~~~l~G~nGsGKSTLl~~l~G~~~~-----------~~G~i~~~g~~~~~~~~~~---~~~~~i~~~ 83 (241)
T PRK10895 20 EDVSLTVNS--GEIVGLLGPNGAGKTTTFYMVVGIVPR-----------DAGNIIIDDEDISLLPLHA---RARRGIGYL 83 (241)
T ss_pred eeeeEEEcC--CcEEEEECCCCCCHHHHHHHHhCCCCC-----------CCcEEEECCEECCCCCHHH---HHHhCeEEe
Confidence 589999999 889999999999999999999999866 7899999998765332111 011233444
Q ss_pred ccccccccc---hhHHHHHHhcC---ChHHHHHHHHHHHHHccC--ccccccCcccccceecccee---------eeecC
Q 018394 88 RQVIAVSKS---SDIVLMVLDAS---KSEGHRQILTKELEAVGL--RLNKRPPQIYFKKKKTGGIS---------FNSTL 150 (356)
Q Consensus 88 ~~~~~~~~~---~d~i~~v~d~~---~~~~~~~~i~~~L~~~~i--~l~~~~~~lS~g~~qr~~ia---------l~~DE 150 (356)
.|....+.. .+.+.+..... ........+.++++.+++ ..++++..||+||+||+.++ +++||
T Consensus 84 ~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDE 163 (241)
T PRK10895 84 PQEASIFRRLSVYDNLMAVLQIRDDLSAEQREDRANELMEEFHIEHLRDSMGQSLSGGERRRVEIARALAANPKFILLDE 163 (241)
T ss_pred ccCCcccccCcHHHHHhhhhhcccccCHHHHHHHHHHHHHHcCCHHHhhcchhhCCHHHHHHHHHHHHHhcCCCEEEEcC
Confidence 444333322 34443322111 122234567788999998 56888999999999999988 99999
Q ss_pred CCCCCCHHHHH---HHHHHhcc-cCcEEEEccCCC
Q 018394 151 PLTHVDEKLCY---QILHEYKI-HNAEVLFREDAT 181 (356)
Q Consensus 151 p~~~LD~~~~~---~il~~l~~-~~~~i~~thd~~ 181 (356)
||++||+.... ++++.+.. +.+++++||+..
T Consensus 164 Pt~~LD~~~~~~l~~~l~~~~~~g~tiii~sH~~~ 198 (241)
T PRK10895 164 PFAGVDPISVIDIKRIIEHLRDSGLGVLITDHNVR 198 (241)
T ss_pred CcccCCHHHHHHHHHHHHHHHhcCCEEEEEEcCHH
Confidence 99999998755 44555543 458999999974
No 152
>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.
Probab=99.84 E-value=1.7e-20 Score=173.65 Aligned_cols=178 Identities=19% Similarity=0.190 Sum_probs=121.0
Q ss_pred CCCCeEEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCccccccccccccceEEEECCEeecccC---c---c--cc-cc
Q 018394 8 AGEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLD---L---P--GI-IE 78 (356)
Q Consensus 8 ~~~s~~v~~~~g~~v~LvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~~D---~---p--Gl-~~ 78 (356)
+++||++.+ |++++|+|+||||||||+++|+|...+ ..|.+.++|.++..++ . | .. ..
T Consensus 17 ~~vs~~i~~--Ge~~~i~G~nGsGKSTLl~~l~G~~~~-----------~~G~i~~~g~~i~~~~~~~~~~~~~~~~~~~ 83 (252)
T TIGR03005 17 DGLNFSVAA--GEKVALIGPSGSGKSTILRILMTLEPI-----------DEGQIQVEGEQLYHMPGRNGPLVPADEKHLR 83 (252)
T ss_pred eeeeEEEcC--CCEEEEECCCCCCHHHHHHHHhCCCCC-----------CceEEEECCEEccccccccccccccchhHHH
Confidence 589999999 889999999999999999999999866 7999999998774321 0 0 00 00
Q ss_pred ccccCccccccccccccc---hhHHHHHH-h--cCChHHHHHHHHHHHHHccC--ccccccCcccccceecccee-----
Q 018394 79 GASEGKGRGRQVIAVSKS---SDIVLMVL-D--ASKSEGHRQILTKELEAVGL--RLNKRPPQIYFKKKKTGGIS----- 145 (356)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~---~d~i~~v~-d--~~~~~~~~~~i~~~L~~~~i--~l~~~~~~lS~g~~qr~~ia----- 145 (356)
.....+++..|....+.. .+.+.+.. . ........+.+.+.++.+++ .+++.+..||+||+||++++
T Consensus 84 ~~~~~i~~v~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~laral~~ 163 (252)
T TIGR03005 84 QMRNKIGMVFQSFNLFPHKTVLDNVTEAPVLVLGMARAEAEKRAMELLDMVGLADKADHMPAQLSGGQQQRVAIARALAM 163 (252)
T ss_pred HHhhCeEEEecCcccCCCCcHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhHhhcChhhcCHHHHHHHHHHHHHHc
Confidence 112234444444333332 34443321 1 11222233457788999998 67888999999999999988
Q ss_pred ----eeecCCCCCCCHHHHHH---HHHHhcc--cCcEEEEccCCCHHHHHHHHhccccccceEEEeecCCC
Q 018394 146 ----FNSTLPLTHVDEKLCYQ---ILHEYKI--HNAEVLFREDATVDDLIDVIEGNRKYMKCVYVYNKIDV 207 (356)
Q Consensus 146 ----l~~DEp~~~LD~~~~~~---il~~l~~--~~~~i~~thd~~~~~~~~~i~~~~~~~p~i~v~NK~Dl 207 (356)
+++||||++||+..... +|+++.. +.++|++||+...... ....+++++..-+
T Consensus 164 ~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~~~~~---------~~d~i~~l~~G~i 225 (252)
T TIGR03005 164 RPKVMLFDEVTSALDPELVGEVLNVIRRLASEHDLTMLLVTHEMGFARE---------FADRVCFFDKGRI 225 (252)
T ss_pred CCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHH---------hcCEEEEEECCEE
Confidence 89999999999987554 4444433 4589999999754321 1255666665433
No 153
>PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.84 E-value=1.3e-20 Score=176.29 Aligned_cols=159 Identities=21% Similarity=0.230 Sum_probs=115.0
Q ss_pred CCCCeEEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCccccccccccccceEEEECCEeecccCccccccccccCcccc
Q 018394 8 AGEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRG 87 (356)
Q Consensus 8 ~~~s~~v~~~~g~~v~LvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~~D~pGl~~~~~~~~~~~ 87 (356)
.++||++.+ |++++|+|+||||||||+++|+|...+ ..|.|.++|.++...+...+ ...+++.
T Consensus 26 ~~isl~i~~--Ge~~~l~G~nGsGKSTLl~~l~Gl~~p-----------~~G~I~~~g~~i~~~~~~~~----~~~i~~v 88 (271)
T PRK13632 26 KNVSFEINE--GEYVAILGHNGSGKSTISKILTGLLKP-----------QSGEIKIDGITISKENLKEI----RKKIGII 88 (271)
T ss_pred eeeEEEEcC--CCEEEEECCCCCCHHHHHHHHhcCCCC-----------CCceEEECCEecCcCCHHHH----hcceEEE
Confidence 688999999 889999999999999999999999866 78999999988753222211 1223443
Q ss_pred ccccc----cccchhHHHHHHhc--CChHHHHHHHHHHHHHccC--ccccccCcccccceecccee---------eeecC
Q 018394 88 RQVIA----VSKSSDIVLMVLDA--SKSEGHRQILTKELEAVGL--RLNKRPPQIYFKKKKTGGIS---------FNSTL 150 (356)
Q Consensus 88 ~~~~~----~~~~~d~i~~v~d~--~~~~~~~~~i~~~L~~~~i--~l~~~~~~lS~g~~qr~~ia---------l~~DE 150 (356)
.|... .....+.+.+.... .........+.+.++.+++ .+++.+..||+||+||++|+ +++||
T Consensus 89 ~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~lllLDE 168 (271)
T PRK13632 89 FQNPDNQFIGATVEDDIAFGLENKKVPPKKMKDIIDDLAKKVGMEDYLDKEPQNLSGGQKQRVAIASVLALNPEIIIFDE 168 (271)
T ss_pred EeCHHHhcCcccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCHHHhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeC
Confidence 43321 12334555443221 2222234457888999999 68899999999999999988 99999
Q ss_pred CCCCCCHHHHHHH---HHHhcc-c-CcEEEEccCCCHH
Q 018394 151 PLTHVDEKLCYQI---LHEYKI-H-NAEVLFREDATVD 183 (356)
Q Consensus 151 p~~~LD~~~~~~i---l~~l~~-~-~~~i~~thd~~~~ 183 (356)
||++||+.....+ ++.+.. + .+++++||+.+..
T Consensus 169 P~~gLD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~ 206 (271)
T PRK13632 169 STSMLDPKGKREIKKIMVDLRKTRKKTLISITHDMDEA 206 (271)
T ss_pred CcccCCHHHHHHHHHHHHHHHHhcCcEEEEEEechhHH
Confidence 9999999885554 444433 2 5899999997654
No 154
>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.84 E-value=2e-20 Score=172.88 Aligned_cols=164 Identities=18% Similarity=0.141 Sum_probs=114.2
Q ss_pred CCCCeEEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCccccccccccccceEEEECCEeecccCccccccccccCcccc
Q 018394 8 AGEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRG 87 (356)
Q Consensus 8 ~~~s~~v~~~~g~~v~LvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~~D~pGl~~~~~~~~~~~ 87 (356)
+++||++.+ |++++|+|+||||||||+++|+|...+- |. .|..|.|.++|.++.-.+... ....+++.
T Consensus 20 ~~is~~i~~--Ge~~~i~G~nGsGKSTLl~~i~G~~~~~---~~---~~~~G~i~~~g~~i~~~~~~~----~~~~i~~v 87 (250)
T PRK14247 20 DGVNLEIPD--NTITALMGPSGSGKSTLLRVFNRLIELY---PE---ARVSGEVYLDGQDIFKMDVIE----LRRRVQMV 87 (250)
T ss_pred ecceeEEcC--CCEEEEECCCCCCHHHHHHHHhccCCCC---CC---CCCceEEEECCEECCcCCHHH----HhccEEEE
Confidence 589999999 8899999999999999999999987530 00 136899999998764332111 12234444
Q ss_pred cccccccc---chhHHHHHHhcC----ChHHHHHHHHHHHHHccC------ccccccCcccccceecccee---------
Q 018394 88 RQVIAVSK---SSDIVLMVLDAS----KSEGHRQILTKELEAVGL------RLNKRPPQIYFKKKKTGGIS--------- 145 (356)
Q Consensus 88 ~~~~~~~~---~~d~i~~v~d~~----~~~~~~~~i~~~L~~~~i------~l~~~~~~lS~g~~qr~~ia--------- 145 (356)
.|....+. ..+.+.+..... ......+.+.+.|+.+++ .+++.+.+||+||+||++++
T Consensus 88 ~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgG~~qrv~laral~~~p~l 167 (250)
T PRK14247 88 FQIPNPIPNLSIFENVALGLKLNRLVKSKKELQERVRWALEKAQLWDEVKDRLDAPAGKLSGGQQQRLCIARALAFQPEV 167 (250)
T ss_pred eccCccCCCCcHHHHHHHHHHhccccCCHHHHHHHHHHHHHHcCCCcchhhhhcCCcccCCHHHHHHHHHHHHHhcCCCE
Confidence 54433232 244444332211 112234567788888887 25788899999999999988
Q ss_pred eeecCCCCCCCHHHHHHH---HHHhcccCcEEEEccCCCHH
Q 018394 146 FNSTLPLTHVDEKLCYQI---LHEYKIHNAEVLFREDATVD 183 (356)
Q Consensus 146 l~~DEp~~~LD~~~~~~i---l~~l~~~~~~i~~thd~~~~ 183 (356)
+++||||++||+.....+ ++++..+.+++++||+....
T Consensus 168 llLDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~ 208 (250)
T PRK14247 168 LLADEPTANLDPENTAKIESLFLELKKDMTIVLVTHFPQQA 208 (250)
T ss_pred EEEcCCCccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHH
Confidence 999999999999885544 44444456899999997643
No 155
>PRK14273 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.84 E-value=2.7e-20 Score=172.46 Aligned_cols=181 Identities=15% Similarity=0.107 Sum_probs=120.7
Q ss_pred CCCCeEEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCccccccccccccceEEEECCEeecccCccccccccccCcccc
Q 018394 8 AGEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRG 87 (356)
Q Consensus 8 ~~~s~~v~~~~g~~v~LvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~~D~pGl~~~~~~~~~~~ 87 (356)
+++||++.+ |++++|+|+||||||||+++|+|...+.+. .+..|.+.++|.++...+.+ . ......+++.
T Consensus 24 ~~vs~~i~~--Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~------~~~~G~i~~~g~~i~~~~~~-~-~~~~~~i~~v 93 (254)
T PRK14273 24 NNINIKILK--NSITALIGPSGCGKSTFLRTLNRMNDLVEG------IKIEGNVIYEGKNIYSNNFD-I-LELRRKIGMV 93 (254)
T ss_pred cceeeEEcC--CCEEEEECCCCCCHHHHHHHHhccccCCcC------CCCceEEEECCEeccccccc-H-HHHhhceEEE
Confidence 689999999 889999999999999999999999765110 02479999999876421111 0 0112234444
Q ss_pred ccccccc--cchhHHHHHHhcC---ChHHHHHHHHHHHHHccC------ccccccCcccccceecccee---------ee
Q 018394 88 RQVIAVS--KSSDIVLMVLDAS---KSEGHRQILTKELEAVGL------RLNKRPPQIYFKKKKTGGIS---------FN 147 (356)
Q Consensus 88 ~~~~~~~--~~~d~i~~v~d~~---~~~~~~~~i~~~L~~~~i------~l~~~~~~lS~g~~qr~~ia---------l~ 147 (356)
.|....+ ...+.+.+..... ......+.+.+.|+.+++ .+++.+..||+||+||++|+ ++
T Consensus 94 ~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgG~~qrv~laral~~~p~lll 173 (254)
T PRK14273 94 FQTPNPFLMSIYDNISYGPKIHGTKDKKKLDEIVEQSLKKSALWNEVKDKLNTNALSLSGGQQQRLCIARTLAIEPNVIL 173 (254)
T ss_pred eeccccccCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCchhhHHHHhCCcccCCHHHHHHHHHHHHHHcCCCEEE
Confidence 4433222 3344444332211 111223456777888776 35778899999999999998 99
Q ss_pred ecCCCCCCCHHHHHH---HHHHhcccCcEEEEccCCCHHHHHHHHhccccccceEEEeecCCC
Q 018394 148 STLPLTHVDEKLCYQ---ILHEYKIHNAEVLFREDATVDDLIDVIEGNRKYMKCVYVYNKIDV 207 (356)
Q Consensus 148 ~DEp~~~LD~~~~~~---il~~l~~~~~~i~~thd~~~~~~~~~i~~~~~~~p~i~v~NK~Dl 207 (356)
+||||++||+..... ++..+....++|++||+.+.... .+..+++++...+
T Consensus 174 LDEPt~~LD~~~~~~l~~~l~~~~~~~tvii~sH~~~~~~~---------~~d~i~~l~~G~i 227 (254)
T PRK14273 174 MDEPTSALDPISTGKIEELIINLKESYTIIIVTHNMQQAGR---------ISDRTAFFLNGCI 227 (254)
T ss_pred EeCCCcccCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHH---------hCCEEEEEECCEE
Confidence 999999999988544 45555444689999999764321 1355667765544
No 156
>PRK14242 phosphate transporter ATP-binding protein; Provisional
Probab=99.84 E-value=2.7e-20 Score=172.32 Aligned_cols=166 Identities=17% Similarity=0.129 Sum_probs=112.1
Q ss_pred CCCCeEEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCccccccccccccceEEEECCEeecccCccccccccccCcccc
Q 018394 8 AGEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRG 87 (356)
Q Consensus 8 ~~~s~~v~~~~g~~v~LvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~~D~pGl~~~~~~~~~~~ 87 (356)
++++|++.+ |++++|+|+||||||||+++|+|...+. | ..|..|.+.++|.++...+. .. ......+++.
T Consensus 23 ~~is~~i~~--Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~---~---~~~~~G~i~~~g~~i~~~~~-~~-~~~~~~i~~v 92 (253)
T PRK14242 23 HDISLEFEQ--NQVTALIGPSGCGKSTFLRCLNRMNDLI---P---GARVEGEILLDGENIYDPHV-DV-VELRRRVGMV 92 (253)
T ss_pred cceeEEEeC--CCEEEEECCCCCCHHHHHHHHHhhcccC---C---CCCCceEEEECCEEcccccc-CH-HHHhhcEEEE
Confidence 689999999 8899999999999999999999985310 0 01368999999987642110 00 0111233444
Q ss_pred ccccccc--cchhHHHHHHhcC---ChHHHHHHHHHHHHHccC------ccccccCcccccceecccee---------ee
Q 018394 88 RQVIAVS--KSSDIVLMVLDAS---KSEGHRQILTKELEAVGL------RLNKRPPQIYFKKKKTGGIS---------FN 147 (356)
Q Consensus 88 ~~~~~~~--~~~d~i~~v~d~~---~~~~~~~~i~~~L~~~~i------~l~~~~~~lS~g~~qr~~ia---------l~ 147 (356)
.|....+ ...+.+.+..... ......+.+.+.++.+++ .+++.+..||+||+||+.+| ++
T Consensus 93 ~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrv~laral~~~p~lll 172 (253)
T PRK14242 93 FQKPNPFPKSIFENVAYGLRVNGVKDKAYLAERVERSLRHAALWDEVKDRLHESALGLSGGQQQRLCIARALAVEPEVLL 172 (253)
T ss_pred ecCCCCCcCcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCchhhhHHhhCCcccCCHHHHHHHHHHHHHhcCCCEEE
Confidence 4433222 2244444432221 112234567778888887 25778899999999999988 99
Q ss_pred ecCCCCCCCHHHHHH---HHHHhcccCcEEEEccCCCHH
Q 018394 148 STLPLTHVDEKLCYQ---ILHEYKIHNAEVLFREDATVD 183 (356)
Q Consensus 148 ~DEp~~~LD~~~~~~---il~~l~~~~~~i~~thd~~~~ 183 (356)
+||||++||+..... +++.+..+.+++++||+.+..
T Consensus 173 lDEPt~~LD~~~~~~l~~~l~~~~~~~tvii~tH~~~~~ 211 (253)
T PRK14242 173 MDEPASALDPIATQKIEELIHELKARYTIIIVTHNMQQA 211 (253)
T ss_pred EeCCcccCCHHHHHHHHHHHHHHhcCCeEEEEEecHHHH
Confidence 999999999987544 455554456899999997643
No 157
>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional
Probab=99.84 E-value=1.7e-20 Score=174.93 Aligned_cols=159 Identities=14% Similarity=0.135 Sum_probs=112.6
Q ss_pred CCCCeEEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCccccccccccccceEEEECCEeecccCccccccccccCcccc
Q 018394 8 AGEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRG 87 (356)
Q Consensus 8 ~~~s~~v~~~~g~~v~LvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~~D~pGl~~~~~~~~~~~ 87 (356)
.++||++.+ |++++|+|+||||||||+++|+|...+ ..|.+.++|.++...+...+ ...+++.
T Consensus 28 ~~vs~~i~~--Ge~~~i~G~nGsGKSTLl~~l~Gl~~~-----------~~G~i~~~g~~~~~~~~~~~----~~~i~~v 90 (265)
T PRK10575 28 HPLSLTFPA--GKVTGLIGHNGSGKSTLLKMLGRHQPP-----------SEGEILLDAQPLESWSSKAF----ARKVAYL 90 (265)
T ss_pred eeeeeEEcC--CCEEEEECCCCCCHHHHHHHHcCCCCC-----------CCCEEEECCEehhhCCHHHH----hhheEEe
Confidence 588999999 889999999999999999999999766 78999999987643322111 1123333
Q ss_pred cccccccc---chhHHHHHHhcC------ChHHHHHHHHHHHHHccC--ccccccCcccccceecccee---------ee
Q 018394 88 RQVIAVSK---SSDIVLMVLDAS------KSEGHRQILTKELEAVGL--RLNKRPPQIYFKKKKTGGIS---------FN 147 (356)
Q Consensus 88 ~~~~~~~~---~~d~i~~v~d~~------~~~~~~~~i~~~L~~~~i--~l~~~~~~lS~g~~qr~~ia---------l~ 147 (356)
.|....+. ..+.+.+..... ......+.+.+.|+.+++ .+++.+.+||+||+||++++ ++
T Consensus 91 ~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~~p~lll 170 (265)
T PRK10575 91 PQQLPAAEGMTVRELVAIGRYPWHGALGRFGAADREKVEEAISLVGLKPLAHRLVDSLSGGERQRAWIAMLVAQDSRCLL 170 (265)
T ss_pred ccCCCCCCCccHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHHhcCCcccCCHHHHHHHHHHHHHhcCCCEEE
Confidence 33322222 233333211100 012234567888999999 67889999999999999988 99
Q ss_pred ecCCCCCCCHHHHH---HHHHHhcc--cCcEEEEccCCCHH
Q 018394 148 STLPLTHVDEKLCY---QILHEYKI--HNAEVLFREDATVD 183 (356)
Q Consensus 148 ~DEp~~~LD~~~~~---~il~~l~~--~~~~i~~thd~~~~ 183 (356)
+||||++||+.... +++.++.. +.+++++||+....
T Consensus 171 LDEPt~~LD~~~~~~~~~~l~~l~~~~~~tiii~sH~~~~i 211 (265)
T PRK10575 171 LDEPTSALDIAHQVDVLALVHRLSQERGLTVIAVLHDINMA 211 (265)
T ss_pred EcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHH
Confidence 99999999999855 44555542 45899999997643
No 158
>PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional
Probab=99.84 E-value=1.9e-20 Score=174.66 Aligned_cols=158 Identities=18% Similarity=0.140 Sum_probs=113.0
Q ss_pred CCCCeEEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCccccccccccccceEEEECCEeecccCccccccccccCcccc
Q 018394 8 AGEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRG 87 (356)
Q Consensus 8 ~~~s~~v~~~~g~~v~LvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~~D~pGl~~~~~~~~~~~ 87 (356)
+++||++.+ |++++|+|+|||||||||++|+|...+ ..|.+.++|.++.-.+...+. ..+++.
T Consensus 24 ~~isl~i~~--Ge~~~i~G~nGsGKSTLl~~i~G~~~~-----------~~G~i~~~g~~~~~~~~~~~~----~~i~~v 86 (265)
T PRK10253 24 ENLTVEIPD--GHFTAIIGPNGCGKSTLLRTLSRLMTP-----------AHGHVWLDGEHIQHYASKEVA----RRIGLL 86 (265)
T ss_pred eecceEECC--CCEEEEECCCCCCHHHHHHHHcCCCCC-----------CCcEEEECCEEhhhCCHHHHh----hheEEe
Confidence 689999999 889999999999999999999999866 789999999876533322211 123444
Q ss_pred ccccccccc---hhHHHHHHhcC------ChHHHHHHHHHHHHHccC--ccccccCcccccceecccee---------ee
Q 018394 88 RQVIAVSKS---SDIVLMVLDAS------KSEGHRQILTKELEAVGL--RLNKRPPQIYFKKKKTGGIS---------FN 147 (356)
Q Consensus 88 ~~~~~~~~~---~d~i~~v~d~~------~~~~~~~~i~~~L~~~~i--~l~~~~~~lS~g~~qr~~ia---------l~ 147 (356)
.|....+.. .+.+.+..... ........+.+.++.+++ .+++.+..||+||+||+.|+ ++
T Consensus 87 ~q~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrv~laral~~~p~lll 166 (265)
T PRK10253 87 AQNATTPGDITVQELVARGRYPHQPLFTRWRKEDEEAVTKAMQATGITHLADQSVDTLSGGQRQRAWIAMVLAQETAIML 166 (265)
T ss_pred eccCcCCCCCcHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHHhcCCcccCChHHHHHHHHHHHHhcCCCEEE
Confidence 443333222 33332211000 112233467788999998 67899999999999999998 99
Q ss_pred ecCCCCCCCHHHHHHH---HHHhcc--cCcEEEEccCCCH
Q 018394 148 STLPLTHVDEKLCYQI---LHEYKI--HNAEVLFREDATV 182 (356)
Q Consensus 148 ~DEp~~~LD~~~~~~i---l~~l~~--~~~~i~~thd~~~ 182 (356)
+||||++||+.....+ |..+.. +.+++++||+...
T Consensus 167 lDEPt~gLD~~~~~~l~~~L~~l~~~~~~tiii~tH~~~~ 206 (265)
T PRK10253 167 LDEPTTWLDISHQIDLLELLSELNREKGYTLAAVLHDLNQ 206 (265)
T ss_pred EeCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHH
Confidence 9999999999885554 444433 4589999999764
No 159
>PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=99.84 E-value=1.2e-20 Score=173.00 Aligned_cols=174 Identities=18% Similarity=0.138 Sum_probs=116.6
Q ss_pred CCCCeEEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCccccccccccccceEEEECCEeecccCccccccccccCcccc
Q 018394 8 AGEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRG 87 (356)
Q Consensus 8 ~~~s~~v~~~~g~~v~LvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~~D~pGl~~~~~~~~~~~ 87 (356)
.++||++.+ |++++|+|+|||||||||++|+|...+ ..|.+.++|.++.-.+.... .....++.
T Consensus 22 ~~vs~~i~~--Ge~~~i~G~nGsGKSTLl~~l~G~~~p-----------~~G~i~~~g~~~~~~~~~~~---~~~~i~~~ 85 (237)
T PRK11614 22 HEVSLHINQ--GEIVTLIGANGAGKTTLLGTLCGDPRA-----------TSGRIVFDGKDITDWQTAKI---MREAVAIV 85 (237)
T ss_pred eeeEEEEcC--CcEEEEECCCCCCHHHHHHHHcCCCCC-----------CCceEEECCEecCCCCHHHH---HHhCEEEe
Confidence 688999999 889999999999999999999999866 78999999987643321110 11223333
Q ss_pred ccccccccc---hhHHHHHHhcCChHHHHHHHHHHHHHc-cC--ccccccCcccccceecccee---------eeecCCC
Q 018394 88 RQVIAVSKS---SDIVLMVLDASKSEGHRQILTKELEAV-GL--RLNKRPPQIYFKKKKTGGIS---------FNSTLPL 152 (356)
Q Consensus 88 ~~~~~~~~~---~d~i~~v~d~~~~~~~~~~i~~~L~~~-~i--~l~~~~~~lS~g~~qr~~ia---------l~~DEp~ 152 (356)
.+....+.. .+.+.+...........+.+.+.++.+ ++ ..++++..||+|++||+.++ +++||||
T Consensus 86 ~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~illlDEPt 165 (237)
T PRK11614 86 PEGRRVFSRMTVEENLAMGGFFAERDQFQERIKWVYELFPRLHERRIQRAGTMSGGEQQMLAIGRALMSQPRLLLLDEPS 165 (237)
T ss_pred ccCcccCCCCcHHHHHHHhhhccChhHHHHHHHHHHHHHHHHHHHHhCchhhCCHHHHHHHHHHHHHHhCCCEEEEcCcc
Confidence 333333322 344433211111112223455666666 35 46778899999999999988 9999999
Q ss_pred CCCCHHHHHHH---HHHhcc-cCcEEEEccCCCH-HHHHHHHhccccccceEEEeecCCC
Q 018394 153 THVDEKLCYQI---LHEYKI-HNAEVLFREDATV-DDLIDVIEGNRKYMKCVYVYNKIDV 207 (356)
Q Consensus 153 ~~LD~~~~~~i---l~~l~~-~~~~i~~thd~~~-~~~~~~i~~~~~~~p~i~v~NK~Dl 207 (356)
++||+.....+ ++++.. +.+++++||+.+. .+. +..++++++.-+
T Consensus 166 ~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~----------~d~i~~l~~G~i 215 (237)
T PRK11614 166 LGLAPIIIQQIFDTIEQLREQGMTIFLVEQNANQALKL----------ADRGYVLENGHV 215 (237)
T ss_pred ccCCHHHHHHHHHHHHHHHHCCCEEEEEeCcHHHHHhh----------CCEEEEEeCCEE
Confidence 99999885544 544443 4699999999753 222 356677765433
No 160
>COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=99.84 E-value=1.2e-20 Score=187.02 Aligned_cols=184 Identities=16% Similarity=0.177 Sum_probs=132.5
Q ss_pred CCCC--CCCCCCeEEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCccccccccccccceEEEECCEeecccCccccccc
Q 018394 2 YQGS--SGAGEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEG 79 (356)
Q Consensus 2 y~~~--~~~~~s~~v~~~~g~~v~LvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~~D~pGl~~~ 79 (356)
|.++ .-++++|++++ |..++|||+||||||||+++|+|..++ ..|+|.+||.+.+-++...+++
T Consensus 330 y~~g~~~l~~l~~t~~~--g~~talvG~SGaGKSTLl~lL~G~~~~-----------~~G~I~vng~~l~~l~~~~~~k- 395 (559)
T COG4988 330 YPDGKPALSDLNLTIKA--GQLTALVGASGAGKSTLLNLLLGFLAP-----------TQGEIRVNGIDLRDLSPEAWRK- 395 (559)
T ss_pred cCCCCcccCCceeEecC--CcEEEEECCCCCCHHHHHHHHhCcCCC-----------CCceEEECCccccccCHHHHHh-
Confidence 5554 23789999999 889999999999999999999999987 8999999999988776555433
Q ss_pred cccCccccccccccccc--hhHHHHHHhcCChHHHHHHHHHHHHHccC--ccc----------cccCcccccceecccee
Q 018394 80 ASEGKGRGRQVIAVSKS--SDIVLMVLDASKSEGHRQILTKELEAVGL--RLN----------KRPPQIYFKKKKTGGIS 145 (356)
Q Consensus 80 ~~~~~~~~~~~~~~~~~--~d~i~~v~d~~~~~~~~~~i~~~L~~~~i--~l~----------~~~~~lS~g~~qr~~ia 145 (356)
.+.+..|.+..+.. .+++.+.- +....+.+.+.++..++ .++ ..-..||+||+||+++|
T Consensus 396 ---~i~~v~Q~p~lf~gTireNi~l~~----~~~s~e~i~~al~~a~l~~~v~~p~GLdt~ige~G~~LSgGQ~QRlaLA 468 (559)
T COG4988 396 ---QISWVSQNPYLFAGTIRENILLAR----PDASDEEIIAALDQAGLLEFVPKPDGLDTVIGEGGAGLSGGQAQRLALA 468 (559)
T ss_pred ---HeeeeCCCCccccccHHHHhhccC----CcCCHHHHHHHHHHhcHHHhhcCCCcccchhccCCCCCCHHHHHHHHHH
Confidence 23444555544443 34443321 11223456666777666 222 23345999999999998
Q ss_pred ---------eeecCCCCCCCHHH---HHHHHHHhcccCcEEEEccCCCHHHHHHHHhccccccceEEEeecCCCCChhhH
Q 018394 146 ---------FNSTLPLTHVDEKL---CYQILHEYKIHNAEVLFREDATVDDLIDVIEGNRKYMKCVYVYNKIDVIGIDDV 213 (356)
Q Consensus 146 ---------l~~DEp~~~LD~~~---~~~il~~l~~~~~~i~~thd~~~~~~~~~i~~~~~~~p~i~v~NK~Dl~~~~~~ 213 (356)
+++||||++||.++ +.+.|.++....+++++||+..... ..++|+++|..-+......
T Consensus 469 RAll~~~~l~llDEpTA~LD~etE~~i~~~l~~l~~~ktvl~itHrl~~~~----------~~D~I~vld~G~l~~~g~~ 538 (559)
T COG4988 469 RALLSPASLLLLDEPTAHLDAETEQIILQALQELAKQKTVLVITHRLEDAA----------DADRIVVLDNGRLVEQGTH 538 (559)
T ss_pred HHhcCCCCEEEecCCccCCCHhHHHHHHHHHHHHHhCCeEEEEEcChHHHh----------cCCEEEEecCCceeccCCH
Confidence 89999999999987 5556666667889999999975432 3588999998866544444
Q ss_pred HHH
Q 018394 214 DKL 216 (356)
Q Consensus 214 ~~l 216 (356)
+++
T Consensus 539 ~~L 541 (559)
T COG4988 539 EEL 541 (559)
T ss_pred HHH
Confidence 444
No 161
>PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional
Probab=99.84 E-value=2.3e-20 Score=173.30 Aligned_cols=178 Identities=17% Similarity=0.166 Sum_probs=121.4
Q ss_pred CCCCeEEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCccccccccccccceEEEECCEeecccCc-ccc--------cc
Q 018394 8 AGEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDL-PGI--------IE 78 (356)
Q Consensus 8 ~~~s~~v~~~~g~~v~LvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~~D~-pGl--------~~ 78 (356)
++++|++.+ |++++|+|+||||||||+++|+|...+ ..|.+.++|.++..+.. .+. ..
T Consensus 22 ~~is~~i~~--Ge~~~l~G~nGsGKSTLl~~i~G~~~~-----------~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~ 88 (257)
T PRK10619 22 KGVSLQANA--GDVISIIGSSGSGKSTFLRCINFLEKP-----------SEGSIVVNGQTINLVRDKDGQLKVADKNQLR 88 (257)
T ss_pred eeeEEEEcC--CCEEEEECCCCCCHHHHHHHHhCCCCC-----------CCeEEEECCEEcccccccccccccccchHHH
Confidence 589999999 889999999999999999999999866 78999999987642110 000 00
Q ss_pred ccccCccccccccccccc---hhHHHHHH-hc--CChHHHHHHHHHHHHHccC--cc-ccccCcccccceecccee----
Q 018394 79 GASEGKGRGRQVIAVSKS---SDIVLMVL-DA--SKSEGHRQILTKELEAVGL--RL-NKRPPQIYFKKKKTGGIS---- 145 (356)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~---~d~i~~v~-d~--~~~~~~~~~i~~~L~~~~i--~l-~~~~~~lS~g~~qr~~ia---- 145 (356)
.....+++..|....+.. .+.+.+.. .. .........+.+.++.+++ .+ ++.+..||+|++||+.++
T Consensus 89 ~~~~~i~~v~q~~~l~~~~sv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LS~G~~qrv~laral~ 168 (257)
T PRK10619 89 LLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKQEARERAVKYLAKVGIDERAQGKYPVHLSGGQQQRVSIARALA 168 (257)
T ss_pred HHhhceEEEecCcccCCCCcHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCChhhhhCCcccCCHHHHHHHHHHHHHh
Confidence 112234444444333332 34443311 11 1222334567888999999 33 788899999999999988
Q ss_pred -----eeecCCCCCCCHHHHHHH---HHHhcc-cCcEEEEccCCCHHHHHHHHhccccccceEEEeecCCC
Q 018394 146 -----FNSTLPLTHVDEKLCYQI---LHEYKI-HNAEVLFREDATVDDLIDVIEGNRKYMKCVYVYNKIDV 207 (356)
Q Consensus 146 -----l~~DEp~~~LD~~~~~~i---l~~l~~-~~~~i~~thd~~~~~~~~~i~~~~~~~p~i~v~NK~Dl 207 (356)
+++||||++||+.....+ |+++.. +.+++++||+...... .+..+++++...+
T Consensus 169 ~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivsH~~~~~~~---------~~d~i~~l~~G~i 230 (257)
T PRK10619 169 MEPEVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFARH---------VSSHVIFLHQGKI 230 (257)
T ss_pred cCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHH---------hcCEEEEEECCEE
Confidence 999999999999985554 444543 4689999999754331 2355666665433
No 162
>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.
Probab=99.84 E-value=2.9e-20 Score=170.54 Aligned_cols=157 Identities=18% Similarity=0.128 Sum_probs=109.9
Q ss_pred CCCCeEEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCccccccccccccceEEEECCEeecccCccccccccccCcccc
Q 018394 8 AGEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRG 87 (356)
Q Consensus 8 ~~~s~~v~~~~g~~v~LvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~~D~pGl~~~~~~~~~~~ 87 (356)
.+++|++.+ |++++|+|+|||||||||++|+|...| ..|.+.++|.++... ... .....++.
T Consensus 38 ~~vs~~i~~--Ge~~~i~G~NGsGKSTLl~~i~Gl~~p-----------~~G~i~~~g~~~~~~-~~~----~~~~i~~~ 99 (236)
T cd03267 38 KGISFTIEK--GEIVGFIGPNGAGKTTTLKILSGLLQP-----------TSGEVRVAGLVPWKR-RKK----FLRRIGVV 99 (236)
T ss_pred eceeEEEcC--CCEEEEECCCCCCHHHHHHHHhCCcCC-----------CceEEEECCEEcccc-chh----hcccEEEE
Confidence 588999999 889999999999999999999999866 789999999764311 111 11122222
Q ss_pred c-cccc---cccchhHHHHHHhc--CChHHHHHHHHHHHHHccC--ccccccCcccccceecccee---------eeecC
Q 018394 88 R-QVIA---VSKSSDIVLMVLDA--SKSEGHRQILTKELEAVGL--RLNKRPPQIYFKKKKTGGIS---------FNSTL 150 (356)
Q Consensus 88 ~-~~~~---~~~~~d~i~~v~d~--~~~~~~~~~i~~~L~~~~i--~l~~~~~~lS~g~~qr~~ia---------l~~DE 150 (356)
. +... .....+.+.+.... .......+.+...++.+++ .+++++..||+||+||+.++ +++||
T Consensus 100 ~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDE 179 (236)
T cd03267 100 FGQKTQLWWDLPVIDSFYLLAAIYDLPPARFKKRLDELSELLDLEELLDTPVRQLSLGQRMRAEIAAALLHEPEILFLDE 179 (236)
T ss_pred cCCccccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEcC
Confidence 2 1111 12234444332221 1222334456778888898 57888999999999999887 99999
Q ss_pred CCCCCCHHHHHHH---HHHhcc--cCcEEEEccCCCH
Q 018394 151 PLTHVDEKLCYQI---LHEYKI--HNAEVLFREDATV 182 (356)
Q Consensus 151 p~~~LD~~~~~~i---l~~l~~--~~~~i~~thd~~~ 182 (356)
||++||+.....+ |.++.. +.+++++||+...
T Consensus 180 Pt~~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~~ 216 (236)
T cd03267 180 PTIGLDVVAQENIRNFLKEYNRERGTTVLLTSHYMKD 216 (236)
T ss_pred CCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEecCHHH
Confidence 9999999985554 444432 4599999999764
No 163
>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Probab=99.84 E-value=1.8e-20 Score=167.75 Aligned_cols=152 Identities=15% Similarity=0.179 Sum_probs=109.7
Q ss_pred CCCCeEEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCccccccccccccceEEEECCEeecccCccccccccccCcccc
Q 018394 8 AGEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRG 87 (356)
Q Consensus 8 ~~~s~~v~~~~g~~v~LvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~~D~pGl~~~~~~~~~~~ 87 (356)
.++||++.+ |++++|+|+||||||||+++|+|...+ ..|.+.++|.++.... . .....+++.
T Consensus 17 ~~isl~i~~--Ge~~~i~G~nGsGKSTLl~~l~G~~~~-----------~~G~i~~~g~~~~~~~-~----~~~~~i~~~ 78 (201)
T cd03231 17 SGLSFTLAA--GEALQVTGPNGSGKTTLLRILAGLSPP-----------LAGRVLLNGGPLDFQR-D----SIARGLLYL 78 (201)
T ss_pred ccceEEEcC--CCEEEEECCCCCCHHHHHHHHhCCCCC-----------CCcEEEECCEeccccc-H----HhhhheEEe
Confidence 689999999 889999999999999999999999876 7899999998764211 1 111223333
Q ss_pred ccccccc---cchhHHHHHHhcCChHHHHHHHHHHHHHccC--ccccccCcccccceecccee---------eeecCCCC
Q 018394 88 RQVIAVS---KSSDIVLMVLDASKSEGHRQILTKELEAVGL--RLNKRPPQIYFKKKKTGGIS---------FNSTLPLT 153 (356)
Q Consensus 88 ~~~~~~~---~~~d~i~~v~d~~~~~~~~~~i~~~L~~~~i--~l~~~~~~lS~g~~qr~~ia---------l~~DEp~~ 153 (356)
.|....+ ...+.+.+... ....+.+.+.++.+++ ..++++..||+|++||++++ +++||||+
T Consensus 79 ~q~~~~~~~~tv~e~l~~~~~----~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEPt~ 154 (201)
T cd03231 79 GHAPGIKTTLSVLENLRFWHA----DHSDEQVEEALARVGLNGFEDRPVAQLSAGQQRRVALARLLLSGRPLWILDEPTT 154 (201)
T ss_pred ccccccCCCcCHHHHHHhhcc----cccHHHHHHHHHHcCChhhhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCC
Confidence 3332222 22343333211 1123457788899998 56888999999999999988 99999999
Q ss_pred CCCHHHHHHHHHHh---cc-cCcEEEEccCCC
Q 018394 154 HVDEKLCYQILHEY---KI-HNAEVLFREDAT 181 (356)
Q Consensus 154 ~LD~~~~~~il~~l---~~-~~~~i~~thd~~ 181 (356)
+||+.....+++.+ .. +.+++++||+..
T Consensus 155 ~LD~~~~~~l~~~l~~~~~~g~tiii~sH~~~ 186 (201)
T cd03231 155 ALDKAGVARFAEAMAGHCARGGMVVLTTHQDL 186 (201)
T ss_pred CCCHHHHHHHHHHHHHHHhCCCEEEEEecCch
Confidence 99998865554444 32 458999999864
No 164
>COG2262 HflX GTPases [General function prediction only]
Probab=99.84 E-value=3.7e-21 Score=183.30 Aligned_cols=163 Identities=31% Similarity=0.382 Sum_probs=124.0
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHcCCCCccccccccccccceEEEEC-CEeecccCccccccccccCc-ccccccccccc
Q 018394 18 GHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYN-DTKIQLLDLPGIIEGASEGK-GRGRQVIAVSK 95 (356)
Q Consensus 18 ~g~~v~LvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~-g~~i~~~D~pGl~~~~~~~~-~~~~~~~~~~~ 95 (356)
+-..|+|+|.+|||||||||+||+....+.+..|+|+||+.-.+.+. |.++.+.||.|++...+... .-.+..+....
T Consensus 191 ~~p~vaLvGYTNAGKSTL~N~LT~~~~~~~d~LFATLdpttR~~~l~~g~~vlLtDTVGFI~~LP~~LV~AFksTLEE~~ 270 (411)
T COG2262 191 GIPLVALVGYTNAGKSTLFNALTGADVYVADQLFATLDPTTRRIELGDGRKVLLTDTVGFIRDLPHPLVEAFKSTLEEVK 270 (411)
T ss_pred CCCeEEEEeeccccHHHHHHHHhccCeeccccccccccCceeEEEeCCCceEEEecCccCcccCChHHHHHHHHHHHHhh
Confidence 35789999999999999999999999999999999999999999997 68899999999987543221 11123344566
Q ss_pred chhHHHHHHhcCChHHHHHHHHHHHHHccCccccccCcccccceeccceeeeecCCCCCCCHHHHHHHHHHhcccCcEEE
Q 018394 96 SSDIVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNAEVL 175 (356)
Q Consensus 96 ~~d~i~~v~d~~~~~~~~~~i~~~L~~~~i~l~~~~~~lS~g~~qr~~ial~~DEp~~~LD~~~~~~il~~l~~~~~~i~ 175 (356)
.+|++++|+|++++... +.+ +.+.++|.+++.
T Consensus 271 ~aDlllhVVDaSdp~~~-~~~-----------------------------------------~~v~~vL~el~~------ 302 (411)
T COG2262 271 EADLLLHVVDASDPEIL-EKL-----------------------------------------EAVEDVLAEIGA------ 302 (411)
T ss_pred cCCEEEEEeecCChhHH-HHH-----------------------------------------HHHHHHHHHcCC------
Confidence 79999999999987321 111 223444444432
Q ss_pred EccCCCHHHHHHHHhccccccceEEEeecCCCCChhh-HHHHhcC-CCEEEeccccccchHHHHHHHHHHhCc
Q 018394 176 FREDATVDDLIDVIEGNRKYMKCVYVYNKIDVIGIDD-VDKLARQ-PNSVVISCNLKLNLDRLLARMWEEMGL 246 (356)
Q Consensus 176 ~thd~~~~~~~~~i~~~~~~~p~i~v~NK~Dl~~~~~-~~~l~~~-~~~i~iSa~~~~~l~~L~~~i~~~l~~ 246 (356)
..+|+|+|+||+|++..+. ...+... +..+++||++|.|++.|.+.|.+.+..
T Consensus 303 ------------------~~~p~i~v~NKiD~~~~~~~~~~~~~~~~~~v~iSA~~~~gl~~L~~~i~~~l~~ 357 (411)
T COG2262 303 ------------------DEIPIILVLNKIDLLEDEEILAELERGSPNPVFISAKTGEGLDLLRERIIELLSG 357 (411)
T ss_pred ------------------CCCCEEEEEecccccCchhhhhhhhhcCCCeEEEEeccCcCHHHHHHHHHHHhhh
Confidence 1259999999999886554 3444333 358999999999999999999998863
No 165
>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.84 E-value=1.7e-20 Score=175.38 Aligned_cols=173 Identities=18% Similarity=0.172 Sum_probs=120.7
Q ss_pred CCCCeEEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCccccccccccccceEEEECCEeecccCccccccccccCcccc
Q 018394 8 AGEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRG 87 (356)
Q Consensus 8 ~~~s~~v~~~~g~~v~LvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~~D~pGl~~~~~~~~~~~ 87 (356)
.++||++.+ |++++|+|+||||||||+++|+|...+ ..|.+.++|.++.-.+.+.+ ...+++.
T Consensus 26 ~~isl~i~~--Ge~~~I~G~nGsGKSTLl~~i~Gl~~~-----------~~G~i~~~g~~~~~~~~~~~----~~~i~~v 88 (269)
T PRK13648 26 KDVSFNIPK--GQWTSIVGHNGSGKSTIAKLMIGIEKV-----------KSGEIFYNNQAITDDNFEKL----RKHIGIV 88 (269)
T ss_pred eeeEEEEcC--CCEEEEECCCCCCHHHHHHHHhcCCCC-----------CceEEEECCEECCcCCHHHH----HhheeEE
Confidence 688999999 889999999999999999999999866 78999999987643322211 1223444
Q ss_pred ccccc-ccc---chhHHHHHHhcC--ChHHHHHHHHHHHHHccC--ccccccCcccccceecccee---------eeecC
Q 018394 88 RQVIA-VSK---SSDIVLMVLDAS--KSEGHRQILTKELEAVGL--RLNKRPPQIYFKKKKTGGIS---------FNSTL 150 (356)
Q Consensus 88 ~~~~~-~~~---~~d~i~~v~d~~--~~~~~~~~i~~~L~~~~i--~l~~~~~~lS~g~~qr~~ia---------l~~DE 150 (356)
.|... .+. ..+.+.+..... ......+.+.+.++.+++ ..++.+..||+|++||++|+ +++||
T Consensus 89 ~q~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~lllLDE 168 (269)
T PRK13648 89 FQNPDNQFVGSIVKYDVAFGLENHAVPYDEMHRRVSEALKQVDMLERADYEPNALSGGQKQRVAIAGVLALNPSVIILDE 168 (269)
T ss_pred EeChHHhcccccHHHHHHhhHHhcCCCHHHHHHHHHHHHHHcCCchhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeC
Confidence 44321 111 123333322211 122233457788899998 67888999999999999998 99999
Q ss_pred CCCCCCHHHHHH---HHHHhcc--cCcEEEEccCCCHHHHHHHHhccccccceEEEeecCCC
Q 018394 151 PLTHVDEKLCYQ---ILHEYKI--HNAEVLFREDATVDDLIDVIEGNRKYMKCVYVYNKIDV 207 (356)
Q Consensus 151 p~~~LD~~~~~~---il~~l~~--~~~~i~~thd~~~~~~~~~i~~~~~~~p~i~v~NK~Dl 207 (356)
||++||+..... +++++.. +.+++++||+...... +..+++++..-+
T Consensus 169 Pt~~LD~~~~~~l~~~L~~~~~~~~~tiiivtH~~~~~~~----------~d~i~~l~~G~i 220 (269)
T PRK13648 169 ATSMLDPDARQNLLDLVRKVKSEHNITIISITHDLSEAME----------ADHVIVMNKGTV 220 (269)
T ss_pred CcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCchHHhc----------CCEEEEEECCEE
Confidence 999999998554 4545432 4589999999764321 356777766543
No 166
>PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.84 E-value=2e-20 Score=176.20 Aligned_cols=176 Identities=21% Similarity=0.216 Sum_probs=122.4
Q ss_pred CCCCeEEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCccccccccccccceEEEECCEeecccCccccccccccCcccc
Q 018394 8 AGEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRG 87 (356)
Q Consensus 8 ~~~s~~v~~~~g~~v~LvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~~D~pGl~~~~~~~~~~~ 87 (356)
+++||++.+ |++++|+|+||||||||+++|+|...+ ..|.+.++|.++..- ..... .....+++.
T Consensus 23 ~~vs~~i~~--Ge~~~i~G~nGaGKSTLl~~i~Gl~~p-----------~~G~i~i~g~~~~~~-~~~~~-~~~~~ig~v 87 (283)
T PRK13636 23 KGININIKK--GEVTAILGGNGAGKSTLFQNLNGILKP-----------SSGRILFDGKPIDYS-RKGLM-KLRESVGMV 87 (283)
T ss_pred eeeEEEEcC--CCEEEEECCCCCCHHHHHHHHhcCCCC-----------CccEEEECCEECCCC-cchHH-HHHhhEEEE
Confidence 689999999 889999999999999999999999866 899999999887421 11000 011223444
Q ss_pred ccccc----cccchhHHHHHHhcC--ChHHHHHHHHHHHHHccC--ccccccCcccccceecccee---------eeecC
Q 018394 88 RQVIA----VSKSSDIVLMVLDAS--KSEGHRQILTKELEAVGL--RLNKRPPQIYFKKKKTGGIS---------FNSTL 150 (356)
Q Consensus 88 ~~~~~----~~~~~d~i~~v~d~~--~~~~~~~~i~~~L~~~~i--~l~~~~~~lS~g~~qr~~ia---------l~~DE 150 (356)
.|... .....+.+.+..... ......+.+.++++.+++ ..++++..||+||+||++|+ +++||
T Consensus 88 ~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LS~G~~qrl~laraL~~~p~lLilDE 167 (283)
T PRK13636 88 FQDPDNQLFSASVYQDVSFGAVNLKLPEDEVRKRVDNALKRTGIEHLKDKPTHCLSFGQKKRVAIAGVLVMEPKVLVLDE 167 (283)
T ss_pred ecCcchhhccccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHCCChhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeC
Confidence 44321 112234443322111 222334567888999999 68899999999999999998 99999
Q ss_pred CCCCCCHHHHHH---HHHHhcc--cCcEEEEccCCCHHHHHHHHhccccccceEEEeecCCC
Q 018394 151 PLTHVDEKLCYQ---ILHEYKI--HNAEVLFREDATVDDLIDVIEGNRKYMKCVYVYNKIDV 207 (356)
Q Consensus 151 p~~~LD~~~~~~---il~~l~~--~~~~i~~thd~~~~~~~~~i~~~~~~~p~i~v~NK~Dl 207 (356)
||++||+..... +++.+.. +.+++++||+.+.... .+..++++++.-+
T Consensus 168 Pt~gLD~~~~~~l~~~l~~l~~~~g~tillvsH~~~~~~~---------~~dri~~l~~G~i 220 (283)
T PRK13636 168 PTAGLDPMGVSEIMKLLVEMQKELGLTIIIATHDIDIVPL---------YCDNVFVMKEGRV 220 (283)
T ss_pred CccCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHH---------hCCEEEEEECCEE
Confidence 999999998654 4555543 4599999999765431 2356667665543
No 167
>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA. This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.
Probab=99.84 E-value=1.8e-20 Score=167.23 Aligned_cols=153 Identities=15% Similarity=0.149 Sum_probs=110.1
Q ss_pred CCCCeEEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCccccccccccccceEEEECCEeecccCccccccccccCcccc
Q 018394 8 AGEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRG 87 (356)
Q Consensus 8 ~~~s~~v~~~~g~~v~LvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~~D~pGl~~~~~~~~~~~ 87 (356)
.+++|++.+ |++++|+|+||||||||+++|+|...+ ..|.+.++|.++.... + ......++.
T Consensus 17 ~~vsl~i~~--Ge~~~i~G~nGsGKSTLl~~l~G~~~~-----------~~G~i~~~g~~~~~~~-~----~~~~~i~~~ 78 (198)
T TIGR01189 17 EGLSFTLNA--GEALQVTGPNGIGKTTLLRILAGLLRP-----------DSGEVRWNGTALAEQR-D----EPHRNILYL 78 (198)
T ss_pred eeeeEEEcC--CcEEEEECCCCCCHHHHHHHHhCCCCC-----------CccEEEECCEEcccch-H----HhhhheEEe
Confidence 589999999 889999999999999999999999866 7899999998764321 1 111223333
Q ss_pred ccccccc---cchhHHHHHHhcCChHHHHHHHHHHHHHccC--ccccccCcccccceecccee---------eeecCCCC
Q 018394 88 RQVIAVS---KSSDIVLMVLDASKSEGHRQILTKELEAVGL--RLNKRPPQIYFKKKKTGGIS---------FNSTLPLT 153 (356)
Q Consensus 88 ~~~~~~~---~~~d~i~~v~d~~~~~~~~~~i~~~L~~~~i--~l~~~~~~lS~g~~qr~~ia---------l~~DEp~~ 153 (356)
.+....+ ...+.+.+....... ....+.+.++.+++ .+++++..||+||+||++++ +++||||+
T Consensus 79 ~q~~~~~~~~tv~~~l~~~~~~~~~--~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEPt~ 156 (198)
T TIGR01189 79 GHLPGLKPELSALENLHFWAAIHGG--AQRTIEDALAAVGLTGFEDLPAAQLSAGQQRRLALARLWLSRAPLWILDEPTT 156 (198)
T ss_pred ccCcccccCCcHHHHHHHHHHHcCC--cHHHHHHHHHHcCCHHHhcCChhhcCHHHHHHHHHHHHHhcCCCEEEEeCCCc
Confidence 3332222 224444333222221 12356788899998 67888999999999999988 99999999
Q ss_pred CCCHHHHHHHHH---Hhc-ccCcEEEEccCC
Q 018394 154 HVDEKLCYQILH---EYK-IHNAEVLFREDA 180 (356)
Q Consensus 154 ~LD~~~~~~il~---~l~-~~~~~i~~thd~ 180 (356)
+||......+++ .+. .+.+++++||+.
T Consensus 157 ~LD~~~~~~l~~~l~~~~~~~~tii~~sH~~ 187 (198)
T TIGR01189 157 ALDKAGVALLAGLLRAHLARGGIVLLTTHQD 187 (198)
T ss_pred CCCHHHHHHHHHHHHHHHhCCCEEEEEEccc
Confidence 999987555444 442 345899999986
No 168
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.84 E-value=9e-21 Score=169.56 Aligned_cols=159 Identities=19% Similarity=0.147 Sum_probs=112.9
Q ss_pred CCCCeEEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCccccccccccccceEEEECCEeecccCccccccccccCcccc
Q 018394 8 AGEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRG 87 (356)
Q Consensus 8 ~~~s~~v~~~~g~~v~LvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~~D~pGl~~~~~~~~~~~ 87 (356)
.+++|++.+ |++++|+|+||||||||+++|+|...+ ..|.+.++|.++.. +... ....+++.
T Consensus 18 ~~~s~~i~~--Ge~~~l~G~nGsGKSTLl~~i~G~~~~-----------~~G~v~~~g~~~~~-~~~~----~~~~i~~~ 79 (200)
T PRK13540 18 QQISFHLPA--GGLLHLKGSNGAGKTTLLKLIAGLLNP-----------EKGEILFERQSIKK-DLCT----YQKQLCFV 79 (200)
T ss_pred eeeeEEECC--CCEEEEECCCCCCHHHHHHHHhcCCCC-----------CCeeEEECCCcccc-CHHH----HHhheEEe
Confidence 588999999 889999999999999999999999866 79999999987642 1111 11223333
Q ss_pred ccccccc---cchhHHHHHHhcCChHHHHHHHHHHHHHccC--ccccccCcccccceecccee---------eeecCCCC
Q 018394 88 RQVIAVS---KSSDIVLMVLDASKSEGHRQILTKELEAVGL--RLNKRPPQIYFKKKKTGGIS---------FNSTLPLT 153 (356)
Q Consensus 88 ~~~~~~~---~~~d~i~~v~d~~~~~~~~~~i~~~L~~~~i--~l~~~~~~lS~g~~qr~~ia---------l~~DEp~~ 153 (356)
.+....+ ...+.+.+...... ....+.+.++.+++ ..++++..||+|++||++++ +++||||+
T Consensus 80 ~q~~~~~~~~tv~~~~~~~~~~~~---~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~~rv~laral~~~p~~lilDEP~~ 156 (200)
T PRK13540 80 GHRSGINPYLTLRENCLYDIHFSP---GAVGITELCRLFSLEHLIDYPCGLLSSGQKRQVALLRLWMSKAKLWLLDEPLV 156 (200)
T ss_pred ccccccCcCCCHHHHHHHHHhcCc---chHHHHHHHHHcCCchhhhCChhhcCHHHHHHHHHHHHHhcCCCEEEEeCCCc
Confidence 3332222 22444443321111 12357788888888 56778889999999999988 99999999
Q ss_pred CCCHHHHHHH---HHHhc-ccCcEEEEccCCCHHHHHH
Q 018394 154 HVDEKLCYQI---LHEYK-IHNAEVLFREDATVDDLID 187 (356)
Q Consensus 154 ~LD~~~~~~i---l~~l~-~~~~~i~~thd~~~~~~~~ 187 (356)
+||+.....+ ++.+. .+.+++++||+....+.+|
T Consensus 157 ~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~~d 194 (200)
T PRK13540 157 ALDELSLLTIITKIQEHRAKGGAVLLTSHQDLPLNKAD 194 (200)
T ss_pred ccCHHHHHHHHHHHHHHHHcCCEEEEEeCCchhccccc
Confidence 9999885544 44443 3458999999976655444
No 169
>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein. This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.
Probab=99.84 E-value=3.8e-20 Score=167.05 Aligned_cols=156 Identities=17% Similarity=0.185 Sum_probs=113.2
Q ss_pred CCCCeEEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCccccccccccccceEEEECCEeecccCccccccccccCcccc
Q 018394 8 AGEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRG 87 (356)
Q Consensus 8 ~~~s~~v~~~~g~~v~LvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~~D~pGl~~~~~~~~~~~ 87 (356)
.+++|++.+ |++++|+|+||||||||+++|+|...+ ..|.+.++|.++.-. +. .....++.
T Consensus 15 ~~~s~~i~~--Ge~~~i~G~nGsGKSTLl~~l~G~~~~-----------~~G~i~~~g~~~~~~--~~----~~~~i~~v 75 (213)
T TIGR01277 15 MEFDLNVAD--GEIVAIMGPSGAGKSTLLNLIAGFIEP-----------ASGSIKVNDQSHTGL--AP----YQRPVSML 75 (213)
T ss_pred eeeEEEEeC--CcEEEEECCCCCCHHHHHHHHhcCCCC-----------CCcEEEECCEEcccC--Ch----hccceEEE
Confidence 578999999 889999999999999999999999876 789999999876421 11 11223444
Q ss_pred ccccccccc---hhHHHHHHhcC--ChHHHHHHHHHHHHHccC--ccccccCcccccceecccee---------eeecCC
Q 018394 88 RQVIAVSKS---SDIVLMVLDAS--KSEGHRQILTKELEAVGL--RLNKRPPQIYFKKKKTGGIS---------FNSTLP 151 (356)
Q Consensus 88 ~~~~~~~~~---~d~i~~v~d~~--~~~~~~~~i~~~L~~~~i--~l~~~~~~lS~g~~qr~~ia---------l~~DEp 151 (356)
.|....+.. .+.+.+..... ......+.+.++++.+++ ..++.+..||+||+||+.++ +++|||
T Consensus 76 ~q~~~~~~~~t~~en~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEP 155 (213)
T TIGR01277 76 FQENNLFAHLTVRQNIGLGLHPGLKLNAEQQEKVVDAAQQVGIADYLDRLPEQLSGGQRQRVALARCLVRPNPILLLDEP 155 (213)
T ss_pred eccCccCCCCcHHHHHHhHhhccCCccHHHHHHHHHHHHHcCcHHHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCC
Confidence 444433332 34443322211 111234467788999999 57888999999999999988 999999
Q ss_pred CCCCCHHHHHH---HHHHhcc--cCcEEEEccCCCH
Q 018394 152 LTHVDEKLCYQ---ILHEYKI--HNAEVLFREDATV 182 (356)
Q Consensus 152 ~~~LD~~~~~~---il~~l~~--~~~~i~~thd~~~ 182 (356)
|++||...... ++..+.. +.+++++||+...
T Consensus 156 t~~LD~~~~~~~~~~l~~~~~~~~~tii~vsh~~~~ 191 (213)
T TIGR01277 156 FSALDPLLREEMLALVKQLCSERQRTLLMVTHHLSD 191 (213)
T ss_pred CccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHH
Confidence 99999998554 4445442 4589999999754
No 170
>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]
Probab=99.84 E-value=2.7e-20 Score=180.69 Aligned_cols=166 Identities=14% Similarity=0.160 Sum_probs=133.5
Q ss_pred CCCCeEEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCccccccccccccceEEEECCEeecccCccccccccccCcccc
Q 018394 8 AGEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRG 87 (356)
Q Consensus 8 ~~~s~~v~~~~g~~v~LvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~~D~pGl~~~~~~~~~~~ 87 (356)
.++||+|.+ |++.||+|.||||||||+++|.|...| ++|.|.++|+++.+-++. .....|++++
T Consensus 21 d~V~l~v~~--GeIHaLLGENGAGKSTLm~iL~G~~~P-----------~~GeI~v~G~~v~~~sP~---dA~~~GIGMV 84 (501)
T COG3845 21 DDVSLSVKK--GEIHALLGENGAGKSTLMKILFGLYQP-----------DSGEIRVDGKEVRIKSPR---DAIRLGIGMV 84 (501)
T ss_pred CceeeeecC--CcEEEEeccCCCCHHHHHHHHhCcccC-----------CcceEEECCEEeccCCHH---HHHHcCCcEE
Confidence 589999999 889999999999999999999999987 899999999999875432 2345789999
Q ss_pred ccccccccchhHHHHHHhcC--------ChHHHHHHHHHHHHHccC--ccccccCcccccceecccee---------eee
Q 018394 88 RQVIAVSKSSDIVLMVLDAS--------KSEGHRQILTKELEAVGL--RLNKRPPQIYFKKKKTGGIS---------FNS 148 (356)
Q Consensus 88 ~~~~~~~~~~d~i~~v~d~~--------~~~~~~~~i~~~L~~~~i--~l~~~~~~lS~g~~qr~~ia---------l~~ 148 (356)
+|.+.++.+..+...++-+. +.......+.+..+++|+ .++.+...||.|++||+.|- |++
T Consensus 85 hQHF~Lv~~lTV~ENiiLg~e~~~~~~~~~~~~~~~i~~l~~~yGl~vdp~~~V~dLsVG~qQRVEIlKaLyr~a~iLIL 164 (501)
T COG3845 85 HQHFMLVPTLTVAENIILGLEPSKGGLIDRRQARARIKELSERYGLPVDPDAKVADLSVGEQQRVEILKALYRGARLLIL 164 (501)
T ss_pred eeccccccccchhhhhhhcCccccccccCHHHHHHHHHHHHHHhCCCCCccceeecCCcchhHHHHHHHHHhcCCCEEEE
Confidence 99888777755554443322 122345678888899998 78889999999999999886 999
Q ss_pred cCCCCCCCHHHHHHHHHHhc----ccCcEEEEccCCCHH-HHHHHH
Q 018394 149 TLPLTHVDEKLCYQILHEYK----IHNAEVLFREDATVD-DLIDVI 189 (356)
Q Consensus 149 DEp~~~LD~~~~~~il~~l~----~~~~~i~~thd~~~~-~~~~~i 189 (356)
||||+-|.|..+.+++..++ .+.++|++||-..+. +++|.+
T Consensus 165 DEPTaVLTP~E~~~lf~~l~~l~~~G~tIi~ITHKL~Ev~~iaDrv 210 (501)
T COG3845 165 DEPTAVLTPQEADELFEILRRLAAEGKTIIFITHKLKEVMAIADRV 210 (501)
T ss_pred cCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeccHHHHHHhhCee
Confidence 99999999999877766554 366999999987543 455544
No 171
>TIGR01978 sufC FeS assembly ATPase SufC. SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.
Probab=99.84 E-value=3.1e-20 Score=170.72 Aligned_cols=160 Identities=18% Similarity=0.126 Sum_probs=110.3
Q ss_pred CCCCeEEEecCCcEEEEEcCCCCcHHHHHHHHHcCC--CCccccccccccccceEEEECCEeecccCccccccccccCcc
Q 018394 8 AGEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTH--SEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKG 85 (356)
Q Consensus 8 ~~~s~~v~~~~g~~v~LvG~~gaGKSTLln~L~g~~--~~vs~~p~TT~~~~~G~i~~~g~~i~~~D~pGl~~~~~~~~~ 85 (356)
.++||++.+ |++++|+|+||||||||+++|+|.. .+ ..|.|.++|.++...+.... ...+.+
T Consensus 17 ~~isl~i~~--Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~-----------~~G~i~~~g~~~~~~~~~~~---~~~~i~ 80 (243)
T TIGR01978 17 KGVNLTVKK--GEIHAIMGPNGSGKSTLSKTIAGHPSYEV-----------TSGTILFKGQDLLELEPDER---ARAGLF 80 (243)
T ss_pred eccceEEcC--CCEEEEECCCCCCHHHHHHHHhCCCCCCC-----------CcceEEECCEecCCCCHHHh---hccceE
Confidence 689999999 8899999999999999999999985 34 78999999987654322111 111233
Q ss_pred ccccccccccc---hhHHHHHHhcC---------ChHHHHHHHHHHHHHccC---ccccccC-cccccceecccee----
Q 018394 86 RGRQVIAVSKS---SDIVLMVLDAS---------KSEGHRQILTKELEAVGL---RLNKRPP-QIYFKKKKTGGIS---- 145 (356)
Q Consensus 86 ~~~~~~~~~~~---~d~i~~v~d~~---------~~~~~~~~i~~~L~~~~i---~l~~~~~-~lS~g~~qr~~ia---- 145 (356)
+..|....+.. .+++.+..... ......+.+.+.++.+++ ..++.+. .||+||+||+.++
T Consensus 81 ~v~q~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LS~G~~qrl~la~al~ 160 (243)
T TIGR01978 81 LAFQYPEEIPGVSNLEFLRSALNARRSARGEEPLDLLDFLKLLKAKLALLGMDEEFLNRSVNEGFSGGEKKRNEILQMAL 160 (243)
T ss_pred eeeccccccCCcCHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHcCCchhhcccccccCcCHHHHHHHHHHHHHh
Confidence 33443333322 33333322211 111123457788888988 2466666 5999999999998
Q ss_pred -----eeecCCCCCCCHHHHHHH---HHHhcc-cCcEEEEccCCCHH
Q 018394 146 -----FNSTLPLTHVDEKLCYQI---LHEYKI-HNAEVLFREDATVD 183 (356)
Q Consensus 146 -----l~~DEp~~~LD~~~~~~i---l~~l~~-~~~~i~~thd~~~~ 183 (356)
+++||||++||......+ |+++.. +.+++++||+.+..
T Consensus 161 ~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~vsH~~~~~ 207 (243)
T TIGR01978 161 LEPKLAILDEIDSGLDIDALKIVAEGINRLREPDRSFLIITHYQRLL 207 (243)
T ss_pred cCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCcEEEEEEecHHHH
Confidence 999999999999885554 444443 45899999997654
No 172
>TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein. This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter.
Probab=99.84 E-value=2.7e-20 Score=172.71 Aligned_cols=173 Identities=17% Similarity=0.162 Sum_probs=119.9
Q ss_pred CCCCeEEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCccccccccccccceEEEECCEeecccCccccccccccCcccc
Q 018394 8 AGEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRG 87 (356)
Q Consensus 8 ~~~s~~v~~~~g~~v~LvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~~D~pGl~~~~~~~~~~~ 87 (356)
+++||++.+ |++++|+|+|||||||||++|+|...+ ..|.+.++|.++...+..-+ ...+++.
T Consensus 18 ~~is~~i~~--Ge~~~i~G~nGsGKSTLl~~i~G~~~~-----------~~G~i~~~g~~~~~~~~~~~----~~~i~~~ 80 (256)
T TIGR03873 18 DGVDVTAPP--GSLTGLLGPNGSGKSTLLRLLAGALRP-----------DAGTVDLAGVDLHGLSRRAR----ARRVALV 80 (256)
T ss_pred eeeeEEEcC--CcEEEEECCCCCCHHHHHHHHcCCCCC-----------CCCEEEECCEEcccCCHHHH----hhheEEe
Confidence 689999999 889999999999999999999999866 78999999988754332111 1123333
Q ss_pred ccccccc---cchhHHHHHHh-c-----CChHHHHHHHHHHHHHccC--ccccccCcccccceecccee---------ee
Q 018394 88 RQVIAVS---KSSDIVLMVLD-A-----SKSEGHRQILTKELEAVGL--RLNKRPPQIYFKKKKTGGIS---------FN 147 (356)
Q Consensus 88 ~~~~~~~---~~~d~i~~v~d-~-----~~~~~~~~~i~~~L~~~~i--~l~~~~~~lS~g~~qr~~ia---------l~ 147 (356)
.|....+ ...+.+.+... . .......+.+.+.++.+++ .+++.+..||+||+||++++ ++
T Consensus 81 ~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~lll 160 (256)
T TIGR03873 81 EQDSDTAVPLTVRDVVALGRIPHRSLWAGDSPHDAAVVDRALARTELSHLADRDMSTLSGGERQRVHVARALAQEPKLLL 160 (256)
T ss_pred cccCccCCCCCHHHHHHhcchhhhhhccCCCHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEE
Confidence 3332211 22333332110 0 0112234467888999998 67889999999999999988 99
Q ss_pred ecCCCCCCCHHHHHH---HHHHhcc-cCcEEEEccCCCHHHHHHHHhccccccceEEEeecCC
Q 018394 148 STLPLTHVDEKLCYQ---ILHEYKI-HNAEVLFREDATVDDLIDVIEGNRKYMKCVYVYNKID 206 (356)
Q Consensus 148 ~DEp~~~LD~~~~~~---il~~l~~-~~~~i~~thd~~~~~~~~~i~~~~~~~p~i~v~NK~D 206 (356)
+||||++||...... +|+++.. +.+++++||+...... .+..+++++...
T Consensus 161 lDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~---------~~d~i~~l~~G~ 214 (256)
T TIGR03873 161 LDEPTNHLDVRAQLETLALVRELAATGVTVVAALHDLNLAAS---------YCDHVVVLDGGR 214 (256)
T ss_pred EcCccccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHH---------hCCEEEEEeCCC
Confidence 999999999988554 4445443 4589999999765421 235666766543
No 173
>PRK13633 cobalt transporter ATP-binding subunit; Provisional
Probab=99.84 E-value=2.4e-20 Score=175.41 Aligned_cols=173 Identities=14% Similarity=0.071 Sum_probs=121.0
Q ss_pred CCCCeEEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCccccccccccccceEEEECCEeecccCccccccccccCcccc
Q 018394 8 AGEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRG 87 (356)
Q Consensus 8 ~~~s~~v~~~~g~~v~LvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~~D~pGl~~~~~~~~~~~ 87 (356)
.+++|++.+ |++++|+|+|||||||||++|+|...+ ..|.|.++|.++.....+ ......+++.
T Consensus 27 ~~vs~~i~~--Ge~~~l~G~nGsGKSTLl~~l~Gl~~~-----------~~G~i~i~g~~i~~~~~~---~~~~~~i~~v 90 (280)
T PRK13633 27 DDVNLEVKK--GEFLVILGRNGSGKSTIAKHMNALLIP-----------SEGKVYVDGLDTSDEENL---WDIRNKAGMV 90 (280)
T ss_pred eeeEEEEcC--CCEEEEECCCCCCHHHHHHHHhCCCCC-----------CCceEEECCEeccccccH---HHHhhheEEE
Confidence 589999999 889999999999999999999999876 899999999876421100 0111233444
Q ss_pred ccccc--cc--cchhHHHHHHhcC--ChHHHHHHHHHHHHHccC--ccccccCcccccceecccee---------eeecC
Q 018394 88 RQVIA--VS--KSSDIVLMVLDAS--KSEGHRQILTKELEAVGL--RLNKRPPQIYFKKKKTGGIS---------FNSTL 150 (356)
Q Consensus 88 ~~~~~--~~--~~~d~i~~v~d~~--~~~~~~~~i~~~L~~~~i--~l~~~~~~lS~g~~qr~~ia---------l~~DE 150 (356)
.|... .+ ...+.+.+..... ......+.+.++++.+++ .+++.+..||+||+||++|+ +++||
T Consensus 91 ~q~~~~~~~~~~v~~~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDE 170 (280)
T PRK13633 91 FQNPDNQIVATIVEEDVAFGPENLGIPPEEIRERVDESLKKVGMYEYRRHAPHLLSGGQKQRVAIAGILAMRPECIIFDE 170 (280)
T ss_pred ecChhhhhccccHHHHHHhhHhhcCCCHHHHHHHHHHHHHHCCCHhHhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeC
Confidence 44321 11 1233343322211 222334567888999999 67889999999999999998 99999
Q ss_pred CCCCCCHHHHHHH---HHHhcc--cCcEEEEccCCCHHHHHHHHhccccccceEEEeecCC
Q 018394 151 PLTHVDEKLCYQI---LHEYKI--HNAEVLFREDATVDDLIDVIEGNRKYMKCVYVYNKID 206 (356)
Q Consensus 151 p~~~LD~~~~~~i---l~~l~~--~~~~i~~thd~~~~~~~~~i~~~~~~~p~i~v~NK~D 206 (356)
||++||+.....+ +.++.. +.+++++||+.+.... +..+++++..-
T Consensus 171 Pt~gLD~~~~~~l~~~l~~l~~~~g~tillvtH~~~~~~~----------~d~v~~l~~G~ 221 (280)
T PRK13633 171 PTAMLDPSGRREVVNTIKELNKKYGITIILITHYMEEAVE----------ADRIIVMDSGK 221 (280)
T ss_pred CcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecChHHHhc----------CCEEEEEECCE
Confidence 9999999985554 444432 4589999999875432 35667776543
No 174
>PRK14267 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.84 E-value=2.5e-20 Score=172.61 Aligned_cols=178 Identities=19% Similarity=0.143 Sum_probs=119.1
Q ss_pred CCCCeEEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCccccccccccccceEEEECCEeecc--cCccccccccccCcc
Q 018394 8 AGEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQL--LDLPGIIEGASEGKG 85 (356)
Q Consensus 8 ~~~s~~v~~~~g~~v~LvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~--~D~pGl~~~~~~~~~ 85 (356)
++++|++.+ |++++|+|+||||||||+++|+|...+- +..|..|.|.++|.++.. .+... ....++
T Consensus 21 ~~is~~i~~--Ge~~~l~G~nGsGKSTLl~~l~G~~~~~------~~~~~~G~i~~~g~~i~~~~~~~~~----~~~~i~ 88 (253)
T PRK14267 21 KGVDLKIPQ--NGVFALMGPSGCGKSTLLRTFNRLLELN------EEARVEGEVRLFGRNIYSPDVDPIE----VRREVG 88 (253)
T ss_pred ecceEEEcC--CCEEEEECCCCCCHHHHHHHHhccCCcc------cCCCCceEEEECCEEccccccChHH----Hhhcee
Confidence 689999999 8899999999999999999999997540 001358999999987641 11111 112334
Q ss_pred ccccccccccc---hhHHHHHHhcC----ChHHHHHHHHHHHHHccC------ccccccCcccccceecccee-------
Q 018394 86 RGRQVIAVSKS---SDIVLMVLDAS----KSEGHRQILTKELEAVGL------RLNKRPPQIYFKKKKTGGIS------- 145 (356)
Q Consensus 86 ~~~~~~~~~~~---~d~i~~v~d~~----~~~~~~~~i~~~L~~~~i------~l~~~~~~lS~g~~qr~~ia------- 145 (356)
+..|....+.. .+.+.+..... ........+.+.++.+++ .+++++..||+|++||++|+
T Consensus 89 ~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p 168 (253)
T PRK14267 89 MVFQYPNPFPHLTIYDNVAIGVKLNGLVKSKKELDERVEWALKKAALWDEVKDRLNDYPSNLSGGQRQRLVIARALAMKP 168 (253)
T ss_pred EEecCCccCCCCcHHHHHHHHHHhcCccCCHHHHHHHHHHHHHHcCCccchhhhhccChhhCCHHHHHHHHHHHHHhcCC
Confidence 44444333322 34443322211 112223456778888876 36778899999999999988
Q ss_pred --eeecCCCCCCCHHHHHHH---HHHhcccCcEEEEccCCCHHHHHHHHhccccccceEEEeecCC
Q 018394 146 --FNSTLPLTHVDEKLCYQI---LHEYKIHNAEVLFREDATVDDLIDVIEGNRKYMKCVYVYNKID 206 (356)
Q Consensus 146 --l~~DEp~~~LD~~~~~~i---l~~l~~~~~~i~~thd~~~~~~~~~i~~~~~~~p~i~v~NK~D 206 (356)
+++||||++||+.....+ |+.+....++|++||+...... .+..+++++..-
T Consensus 169 ~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~---------~~d~i~~l~~G~ 225 (253)
T PRK14267 169 KILLMDEPTANIDPVGTAKIEELLFELKKEYTIVLVTHSPAQAAR---------VSDYVAFLYLGK 225 (253)
T ss_pred CEEEEcCCCccCCHHHHHHHHHHHHHHhhCCEEEEEECCHHHHHh---------hCCEEEEEECCE
Confidence 999999999999885544 4444444699999999754221 235666666543
No 175
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.84 E-value=2.6e-20 Score=168.35 Aligned_cols=155 Identities=17% Similarity=0.112 Sum_probs=110.6
Q ss_pred CCCCeEEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCccccccccccccceEEEECCEeecccCccccccccccCcccc
Q 018394 8 AGEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRG 87 (356)
Q Consensus 8 ~~~s~~v~~~~g~~v~LvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~~D~pGl~~~~~~~~~~~ 87 (356)
.++||++.+ |++++|+|+||||||||+++|+|...+ ..|.+.++|.++...+ ....+++.
T Consensus 28 ~~vs~~i~~--Ge~~~i~G~nGsGKSTLl~~i~G~~~~-----------~~G~i~~~g~~i~~~~-------~~~~i~~~ 87 (214)
T PRK13543 28 GPLDFHVDA--GEALLVQGDNGAGKTTLLRVLAGLLHV-----------ESGQIQIDGKTATRGD-------RSRFMAYL 87 (214)
T ss_pred ecceEEECC--CCEEEEEcCCCCCHHHHHHHHhCCCCC-----------CCeeEEECCEEccchh-------hhhceEEe
Confidence 688999999 889999999999999999999999876 7899999998764211 01122333
Q ss_pred cccccccc---chhHHHHHHhcCChHHHHHHHHHHHHHccC--ccccccCcccccceecccee---------eeecCCCC
Q 018394 88 RQVIAVSK---SSDIVLMVLDASKSEGHRQILTKELEAVGL--RLNKRPPQIYFKKKKTGGIS---------FNSTLPLT 153 (356)
Q Consensus 88 ~~~~~~~~---~~d~i~~v~d~~~~~~~~~~i~~~L~~~~i--~l~~~~~~lS~g~~qr~~ia---------l~~DEp~~ 153 (356)
.+....+. ..+.+.+...... ....+.+.+.++.+++ .+++.+..||+|++||++++ +++||||+
T Consensus 88 ~q~~~~~~~~t~~e~l~~~~~~~~-~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~ 166 (214)
T PRK13543 88 GHLPGLKADLSTLENLHFLCGLHG-RRAKQMPGSALAIVGLAGYEDTLVRQLSAGQKKRLALARLWLSPAPLWLLDEPYA 166 (214)
T ss_pred ecCcccccCCcHHHHHHHHHHhcC-CcHHHHHHHHHHHcCChhhccCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcc
Confidence 33322222 2333333222111 1223456778888888 57888999999999999988 99999999
Q ss_pred CCCHHHHHHHHH---Hhcc-cCcEEEEccCCCHH
Q 018394 154 HVDEKLCYQILH---EYKI-HNAEVLFREDATVD 183 (356)
Q Consensus 154 ~LD~~~~~~il~---~l~~-~~~~i~~thd~~~~ 183 (356)
+||+.....+.+ .+.. +.+++++||+....
T Consensus 167 ~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~ 200 (214)
T PRK13543 167 NLDLEGITLVNRMISAHLRGGGAALVTTHGAYAA 200 (214)
T ss_pred cCCHHHHHHHHHHHHHHHhCCCEEEEEecChhhh
Confidence 999998555444 4332 45899999997643
No 176
>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.
Probab=99.83 E-value=3.8e-20 Score=168.50 Aligned_cols=149 Identities=21% Similarity=0.188 Sum_probs=107.1
Q ss_pred CCCCeEEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCccccccccccccceEEEECCEeecccCccccccccccCcccc
Q 018394 8 AGEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRG 87 (356)
Q Consensus 8 ~~~s~~v~~~~g~~v~LvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~~D~pGl~~~~~~~~~~~ 87 (356)
.+++|++.+ |++++|+|+||||||||+++|+|...+ ..|.+.++|.++..... ...
T Consensus 39 ~~vs~~i~~--Ge~~~i~G~nGsGKSTLl~~l~G~~~p-----------~~G~i~~~g~~~~~~~~---------~~~-- 94 (224)
T cd03220 39 KDVSFEVPR--GERIGLIGRNGAGKSTLLRLLAGIYPP-----------DSGTVTVRGRVSSLLGL---------GGG-- 94 (224)
T ss_pred eeeEEEEcC--CCEEEEECCCCCCHHHHHHHHhCCCCC-----------CceEEEECCEEchhhcc---------ccc--
Confidence 588999999 889999999999999999999999766 79999999987542210 000
Q ss_pred ccccccccchhHHHHHHhcC--ChHHHHHHHHHHHHHccC--ccccccCcccccceecccee---------eeecCCCCC
Q 018394 88 RQVIAVSKSSDIVLMVLDAS--KSEGHRQILTKELEAVGL--RLNKRPPQIYFKKKKTGGIS---------FNSTLPLTH 154 (356)
Q Consensus 88 ~~~~~~~~~~d~i~~v~d~~--~~~~~~~~i~~~L~~~~i--~l~~~~~~lS~g~~qr~~ia---------l~~DEp~~~ 154 (356)
+.......+++.+..... ......+.+.+.++.+++ .+++.+..||+||+||++++ +++||||++
T Consensus 95 --~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~~p~llllDEP~~g 172 (224)
T cd03220 95 --FNPELTGRENIYLNGRLLGLSRKEIDEKIDEIIEFSELGDFIDLPVKTYSSGMKARLAFAIATALEPDILLIDEVLAV 172 (224)
T ss_pred --CCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCccc
Confidence 001112234443322211 122223456777888888 67888999999999999988 999999999
Q ss_pred CCHHHHHH---HHHHhcc-cCcEEEEccCCCH
Q 018394 155 VDEKLCYQ---ILHEYKI-HNAEVLFREDATV 182 (356)
Q Consensus 155 LD~~~~~~---il~~l~~-~~~~i~~thd~~~ 182 (356)
||+..... ++..+.. +.+++++||+...
T Consensus 173 LD~~~~~~~~~~l~~~~~~~~tiii~sH~~~~ 204 (224)
T cd03220 173 GDAAFQEKCQRRLRELLKQGKTVILVSHDPSS 204 (224)
T ss_pred CCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHH
Confidence 99987544 4444433 3589999999754
No 177
>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters. Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Probab=99.83 E-value=7.3e-21 Score=172.42 Aligned_cols=157 Identities=17% Similarity=0.178 Sum_probs=105.7
Q ss_pred CCCCeEEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCccccccccccccceEEEECCEeecccCccccccccccCcccc
Q 018394 8 AGEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRG 87 (356)
Q Consensus 8 ~~~s~~v~~~~g~~v~LvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~~D~pGl~~~~~~~~~~~ 87 (356)
.++||++.+ |++++|+|+||||||||+++|+|...+ ..|.+.++|.++...+... ....+++.
T Consensus 21 ~~i~~~i~~--G~~~~i~G~nGsGKSTLl~~i~G~~~~-----------~~G~i~~~g~~~~~~~~~~----~~~~i~~~ 83 (220)
T cd03245 21 DNVSLTIRA--GEKVAIIGRVGSGKSTLLKLLAGLYKP-----------TSGSVLLDGTDIRQLDPAD----LRRNIGYV 83 (220)
T ss_pred cceEEEEcC--CCEEEEECCCCCCHHHHHHHHhcCcCC-----------CCCeEEECCEEhHHCCHHH----HHhhEEEe
Confidence 688999999 889999999999999999999999866 7899999998764332111 11223333
Q ss_pred ccccccccchhHHHHHHhcCChHHHHHHHHHHHHHccC--ccccc-----------cCcccccceecccee---------
Q 018394 88 RQVIAVSKSSDIVLMVLDASKSEGHRQILTKELEAVGL--RLNKR-----------PPQIYFKKKKTGGIS--------- 145 (356)
Q Consensus 88 ~~~~~~~~~~d~i~~v~d~~~~~~~~~~i~~~L~~~~i--~l~~~-----------~~~lS~g~~qr~~ia--------- 145 (356)
.|....+. ..+...+.-.... .....+.+.++.+++ .+++. +..||+||+||+.++
T Consensus 84 ~q~~~~~~-~tv~e~l~~~~~~-~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~LSgG~~qrl~la~al~~~p~l 161 (220)
T cd03245 84 PQDVTLFY-GTLRDNITLGAPL-ADDERILRAAELAGVTDFVNKHPNGLDLQIGERGRGLSGGQRQAVALARALLNDPPI 161 (220)
T ss_pred CCCCcccc-chHHHHhhcCCCC-CCHHHHHHHHHHcCcHHHHHhccccccceecCCCccCCHHHHHHHHHHHHHhcCCCE
Confidence 43332222 1222221111111 112344566677776 34443 369999999999988
Q ss_pred eeecCCCCCCCHHHHHHHHH---HhcccCcEEEEccCCCHH
Q 018394 146 FNSTLPLTHVDEKLCYQILH---EYKIHNAEVLFREDATVD 183 (356)
Q Consensus 146 l~~DEp~~~LD~~~~~~il~---~l~~~~~~i~~thd~~~~ 183 (356)
+++||||++||+.....+++ ++....+++++||+....
T Consensus 162 lllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~ 202 (220)
T cd03245 162 LLLDEPTSAMDMNSEERLKERLRQLLGDKTLIIITHRPSLL 202 (220)
T ss_pred EEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHH
Confidence 99999999999998655544 443345899999997643
No 178
>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional
Probab=99.83 E-value=2.4e-20 Score=173.24 Aligned_cols=178 Identities=19% Similarity=0.137 Sum_probs=117.9
Q ss_pred CCCCeEEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCccccccccccccceEEEECCEe-----ecccCcccccccccc
Q 018394 8 AGEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTK-----IQLLDLPGIIEGASE 82 (356)
Q Consensus 8 ~~~s~~v~~~~g~~v~LvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~-----i~~~D~pGl~~~~~~ 82 (356)
.++||++.+ |++++|+|+||||||||+++|+|...| ..|.|.++|.+ +.-.+...+......
T Consensus 23 ~~is~~i~~--Ge~~~i~G~nGsGKSTLl~~l~Gl~~p-----------~~G~i~~~g~~~~~~~i~~~~~~~~~~~~~~ 89 (258)
T PRK11701 23 RDVSFDLYP--GEVLGIVGESGSGKTTLLNALSARLAP-----------DAGEVHYRMRDGQLRDLYALSEAERRRLLRT 89 (258)
T ss_pred eeeeEEEeC--CCEEEEECCCCCCHHHHHHHHhCCCCC-----------CCCEEEECCccccccccccCCHHHHHHHhhc
Confidence 589999999 889999999999999999999999866 78999999987 432221111000112
Q ss_pred Cccccccccc--cc---cchhHHHHHHhc---CChHHHHHHHHHHHHHccC---ccccccCcccccceecccee------
Q 018394 83 GKGRGRQVIA--VS---KSSDIVLMVLDA---SKSEGHRQILTKELEAVGL---RLNKRPPQIYFKKKKTGGIS------ 145 (356)
Q Consensus 83 ~~~~~~~~~~--~~---~~~d~i~~v~d~---~~~~~~~~~i~~~L~~~~i---~l~~~~~~lS~g~~qr~~ia------ 145 (356)
..++..|... .. ...+.+.+.+.. .........+.++++.+++ .+++.+..||+||+||+++|
T Consensus 90 ~i~~v~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~Gq~qrl~laral~~~ 169 (258)
T PRK11701 90 EWGFVHQHPRDGLRMQVSAGGNIGERLMAVGARHYGDIRATAGDWLERVEIDAARIDDLPTTFSGGMQQRLQIARNLVTH 169 (258)
T ss_pred ceEEEeeCcccccCccccHHHHHHHHHHHhccCcHHHHHHHHHHHHHHcCCChhHHhCCCccCCHHHHHHHHHHHHHhcC
Confidence 2333333321 11 112222221111 1111223456788889988 36788999999999999998
Q ss_pred ---eeecCCCCCCCHHHHHHHHH---Hhcc--cCcEEEEccCCCHHHHHHHHhccccccceEEEeecCCC
Q 018394 146 ---FNSTLPLTHVDEKLCYQILH---EYKI--HNAEVLFREDATVDDLIDVIEGNRKYMKCVYVYNKIDV 207 (356)
Q Consensus 146 ---l~~DEp~~~LD~~~~~~il~---~l~~--~~~~i~~thd~~~~~~~~~i~~~~~~~p~i~v~NK~Dl 207 (356)
+++||||++||+.....+++ .+.. +.++|++||+...... .+..+++++..-+
T Consensus 170 p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~isH~~~~~~~---------~~d~i~~l~~g~i 230 (258)
T PRK11701 170 PRLVFMDEPTGGLDVSVQARLLDLLRGLVRELGLAVVIVTHDLAVARL---------LAHRLLVMKQGRV 230 (258)
T ss_pred CCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHH---------hcCEEEEEECCEE
Confidence 99999999999988655544 4433 4599999999765432 1245666665443
No 179
>PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.83 E-value=2.8e-20 Score=177.88 Aligned_cols=178 Identities=18% Similarity=0.116 Sum_probs=122.4
Q ss_pred CCCCeEEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCccccccccccccceEEEECCEeeccc-------Cc------c
Q 018394 8 AGEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLL-------DL------P 74 (356)
Q Consensus 8 ~~~s~~v~~~~g~~v~LvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~~-------D~------p 74 (356)
.++||++.+ |++++|+|+||||||||+++|+|...+ ..|.|.++|.++.-. .. .
T Consensus 43 ~~vsl~i~~--Ge~~~I~G~nGsGKSTLl~~L~Gl~~p-----------~~G~I~i~g~~~~~~~~~~~~~~~~~~~~~~ 109 (320)
T PRK13631 43 NNISYTFEK--NKIYFIIGNSGSGKSTLVTHFNGLIKS-----------KYGTIQVGDIYIGDKKNNHELITNPYSKKIK 109 (320)
T ss_pred eeeEEEEcC--CCEEEEECCCCCCHHHHHHHHhCCCCC-----------CCCeEEECCEEcccccccccccccccccccc
Confidence 689999999 889999999999999999999999876 799999999876321 00 0
Q ss_pred ccccccccCcccccccc--cccc--chhHHHHHHhc--CChHHHHHHHHHHHHHccC---ccccccCcccccceecccee
Q 018394 75 GIIEGASEGKGRGRQVI--AVSK--SSDIVLMVLDA--SKSEGHRQILTKELEAVGL---RLNKRPPQIYFKKKKTGGIS 145 (356)
Q Consensus 75 Gl~~~~~~~~~~~~~~~--~~~~--~~d~i~~v~d~--~~~~~~~~~i~~~L~~~~i---~l~~~~~~lS~g~~qr~~ia 145 (356)
.. ......+++..|.. ..+. ..+.+.+.... .........+.+.++.+++ .+++.+..||+||+||++||
T Consensus 110 ~~-~~~~~~ig~v~Q~~~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGqkqRvaiA 188 (320)
T PRK13631 110 NF-KELRRRVSMVFQFPEYQLFKDTIEKDIMFGPVALGVKKSEAKKLAKFYLNKMGLDDSYLERSPFGLSGGQKRRVAIA 188 (320)
T ss_pred hH-HHHHhcEEEEEECchhccccchHHHHHHhhHHhcCCCHHHHHHHHHHHHHHcCCChhHhcCCcccCCHHHHHHHHHH
Confidence 00 01122344445532 1222 23333332211 1222234567788999998 36888999999999999998
Q ss_pred ---------eeecCCCCCCCHHHHHHHHHHh---c-ccCcEEEEccCCCHHHHHHHHhccccccceEEEeecCCCC
Q 018394 146 ---------FNSTLPLTHVDEKLCYQILHEY---K-IHNAEVLFREDATVDDLIDVIEGNRKYMKCVYVYNKIDVI 208 (356)
Q Consensus 146 ---------l~~DEp~~~LD~~~~~~il~~l---~-~~~~~i~~thd~~~~~~~~~i~~~~~~~p~i~v~NK~Dl~ 208 (356)
+++||||++||+.....+++.+ . .+.|++++||+.+.... .+..+++++..-+.
T Consensus 189 raL~~~p~iLLLDEPtsgLD~~~~~~l~~~L~~l~~~g~TiiivtHd~~~~~~---------~adri~vl~~G~i~ 255 (320)
T PRK13631 189 GILAIQPEILIFDEPTAGLDPKGEHEMMQLILDAKANNKTVFVITHTMEHVLE---------VADEVIVMDKGKIL 255 (320)
T ss_pred HHHHcCCCEEEEECCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHH---------hCCEEEEEECCEEE
Confidence 9999999999999866555544 3 24599999999764311 23667777766543
No 180
>TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts.
Probab=99.83 E-value=3.4e-20 Score=168.18 Aligned_cols=161 Identities=21% Similarity=0.206 Sum_probs=114.5
Q ss_pred CCCCeEEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCccccccccccccceEEEECCEeecccCccccccccccCcccc
Q 018394 8 AGEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRG 87 (356)
Q Consensus 8 ~~~s~~v~~~~g~~v~LvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~~D~pGl~~~~~~~~~~~ 87 (356)
.++||++.+ |++++|+|+||||||||+++|+|...+ ..|.+.++|.++.-.+..- .......+++.
T Consensus 22 ~~vs~~i~~--G~~~~I~G~nGsGKStLl~~l~G~~~~-----------~~G~i~~~g~~~~~~~~~~-~~~~~~~i~~~ 87 (220)
T TIGR02982 22 FDINLEINP--GEIVILTGPSGSGKTTLLTLIGGLRSV-----------QEGSLKVLGQELYGASEKE-LVQLRRNIGYI 87 (220)
T ss_pred eeeEEEEcC--CCEEEEECCCCCCHHHHHHHHhCCCCC-----------CCeEEEECCEEhHhcCHhH-HHHHHhheEEE
Confidence 589999999 889999999999999999999999866 7999999998875322100 00011233433
Q ss_pred ccccccc---cchhHHHHHHhcC---ChHHHHHHHHHHHHHccC--ccccccCcccccceecccee---------eeecC
Q 018394 88 RQVIAVS---KSSDIVLMVLDAS---KSEGHRQILTKELEAVGL--RLNKRPPQIYFKKKKTGGIS---------FNSTL 150 (356)
Q Consensus 88 ~~~~~~~---~~~d~i~~v~d~~---~~~~~~~~i~~~L~~~~i--~l~~~~~~lS~g~~qr~~ia---------l~~DE 150 (356)
.+....+ ...+.+.+..+.. ........+.+.++.+++ .+++.+..||+|++||+.++ +++||
T Consensus 88 ~q~~~~~~~~t~~~n~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qrv~laral~~~p~illlDE 167 (220)
T TIGR02982 88 FQAHNLLGFLTARQNVQMALELQPNLSYQEARERARAMLEAVGLGDHLDYYPHNLSGGQKQRVAIARALVHRPKLVLADE 167 (220)
T ss_pred cCChhhcCCCCHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCChhhhhcChhhCCHHHHHHHHHHHHHhcCCCEEEEeC
Confidence 4433222 2244444433222 122234467888999999 67888999999999999988 99999
Q ss_pred CCCCCCHHHHHHH---HHHhcc--cCcEEEEccCCCH
Q 018394 151 PLTHVDEKLCYQI---LHEYKI--HNAEVLFREDATV 182 (356)
Q Consensus 151 p~~~LD~~~~~~i---l~~l~~--~~~~i~~thd~~~ 182 (356)
||++||+.....+ ++.+.. +.+++++||+.+.
T Consensus 168 P~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sh~~~~ 204 (220)
T TIGR02982 168 PTAALDSKSGRDVVELMQKLAREQGCTILIVTHDNRI 204 (220)
T ss_pred CCCcCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHH
Confidence 9999999985544 444432 4699999999754
No 181
>PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional
Probab=99.83 E-value=3.5e-20 Score=171.85 Aligned_cols=158 Identities=16% Similarity=0.134 Sum_probs=111.9
Q ss_pred CCCCeEEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCccccccccccccceEEEECCEeecccCccccccccccCcccc
Q 018394 8 AGEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRG 87 (356)
Q Consensus 8 ~~~s~~v~~~~g~~v~LvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~~D~pGl~~~~~~~~~~~ 87 (356)
+++||++.+ |++++|+|+|||||||||++|+|...+ ..|.+.++|.++.-.+...+ ....++.
T Consensus 19 ~~is~~i~~--Ge~~~l~G~nGsGKSTLl~~l~Gl~~~-----------~~G~i~~~g~~~~~~~~~~~----~~~i~~~ 81 (255)
T PRK11231 19 NDLSLSLPT--GKITALIGPNGCGKSTLLKCFARLLTP-----------QSGTVFLGDKPISMLSSRQL----ARRLALL 81 (255)
T ss_pred eeeeeEEcC--CcEEEEECCCCCCHHHHHHHHhCCcCC-----------CCcEEEECCEEhHHCCHHHH----hhheEEe
Confidence 588999999 889999999999999999999999766 78999999987653332211 1122333
Q ss_pred ccccccc---cchhHHHHHHh----cC--ChHHHHHHHHHHHHHccC--ccccccCcccccceecccee---------ee
Q 018394 88 RQVIAVS---KSSDIVLMVLD----AS--KSEGHRQILTKELEAVGL--RLNKRPPQIYFKKKKTGGIS---------FN 147 (356)
Q Consensus 88 ~~~~~~~---~~~d~i~~v~d----~~--~~~~~~~~i~~~L~~~~i--~l~~~~~~lS~g~~qr~~ia---------l~ 147 (356)
.|....+ ...+.+.+... .. ......+.+.+.++.+++ ..++.+..||+||+||+.++ ++
T Consensus 82 ~q~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~lll 161 (255)
T PRK11231 82 PQHHLTPEGITVRELVAYGRSPWLSLWGRLSAEDNARVNQAMEQTRINHLADRRLTDLSGGQRQRAFLAMVLAQDTPVVL 161 (255)
T ss_pred cccCCCCCCccHHHHHHhccchhhhhccCCCHHHHHHHHHHHHHcCCHHHHcCCcccCCHHHHHHHHHHHHHhcCCCEEE
Confidence 3332222 22344332110 01 112234457788888998 67889999999999999988 99
Q ss_pred ecCCCCCCCHHHHHHHH---HHhcc-cCcEEEEccCCCH
Q 018394 148 STLPLTHVDEKLCYQIL---HEYKI-HNAEVLFREDATV 182 (356)
Q Consensus 148 ~DEp~~~LD~~~~~~il---~~l~~-~~~~i~~thd~~~ 182 (356)
+||||++||+.....++ ..+.. +.+++++||+...
T Consensus 162 lDEP~~~LD~~~~~~l~~~l~~l~~~~~tiii~tH~~~~ 200 (255)
T PRK11231 162 LDEPTTYLDINHQVELMRLMRELNTQGKTVVTVLHDLNQ 200 (255)
T ss_pred EcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEECCHHH
Confidence 99999999998855544 44433 4599999999764
No 182
>PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional
Probab=99.83 E-value=3.8e-20 Score=172.34 Aligned_cols=165 Identities=18% Similarity=0.145 Sum_probs=112.7
Q ss_pred CCCCeEEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCccccccccccccceEEEECCEeecccCc-cccccccccCccc
Q 018394 8 AGEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDL-PGIIEGASEGKGR 86 (356)
Q Consensus 8 ~~~s~~v~~~~g~~v~LvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~~D~-pGl~~~~~~~~~~ 86 (356)
++++|++.+ |++++|+|+|||||||||++|+|...+.+ +..|.+.++|.++...+. +.-........++
T Consensus 21 ~~vs~~i~~--Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~--------~~~G~i~~~g~~~~~~~~~~~~~~~~~~~i~~ 90 (262)
T PRK09984 21 HAVDLNIHH--GEMVALLGPSGSGKSTLLRHLSGLITGDK--------SAGSHIELLGRTVQREGRLARDIRKSRANTGY 90 (262)
T ss_pred ecceEEEcC--CcEEEEECCCCCCHHHHHHHHhccCCCCC--------CCceEEEECCEecccccccchhHHHHHhheEE
Confidence 689999999 88999999999999999999999986510 135999999987643210 0000001122334
Q ss_pred cccccccccc---hhHHHHHHhc----------CChHHHHHHHHHHHHHccC--ccccccCcccccceecccee------
Q 018394 87 GRQVIAVSKS---SDIVLMVLDA----------SKSEGHRQILTKELEAVGL--RLNKRPPQIYFKKKKTGGIS------ 145 (356)
Q Consensus 87 ~~~~~~~~~~---~d~i~~v~d~----------~~~~~~~~~i~~~L~~~~i--~l~~~~~~lS~g~~qr~~ia------ 145 (356)
..|....+.. .+.+.+.... .......+.+.+.++.+++ .+++.+..||+||+||+.++
T Consensus 91 ~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~ 170 (262)
T PRK09984 91 IFQQFNLVNRLSVLENVLIGALGSTPFWRTCFSWFTREQKQRALQALTRVGMVHFAHQRVSTLSGGQQQRVAIARALMQQ 170 (262)
T ss_pred EccccccccCCcHHHHHHhhhcccccchhhhcccccHHHHHHHHHHHHHcCCHHHHhCCccccCHHHHHHHHHHHHHhcC
Confidence 4443333332 3333221110 0012234567889999999 57889999999999999988
Q ss_pred ---eeecCCCCCCCHHHHHHH---HHHhcc--cCcEEEEccCCCH
Q 018394 146 ---FNSTLPLTHVDEKLCYQI---LHEYKI--HNAEVLFREDATV 182 (356)
Q Consensus 146 ---l~~DEp~~~LD~~~~~~i---l~~l~~--~~~~i~~thd~~~ 182 (356)
+++||||++||......+ ++.+.. +.++|++||+...
T Consensus 171 p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~tH~~~~ 215 (262)
T PRK09984 171 AKVILADEPIASLDPESARIVMDTLRDINQNDGITVVVTLHQVDY 215 (262)
T ss_pred CCEEEecCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHH
Confidence 999999999999885544 444432 4589999999864
No 183
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=99.83 E-value=2.5e-20 Score=188.89 Aligned_cols=160 Identities=17% Similarity=0.170 Sum_probs=114.9
Q ss_pred CCCCeEEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCccccccccccccceEEEECCEeecccCccccccccccCcccc
Q 018394 8 AGEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRG 87 (356)
Q Consensus 8 ~~~s~~v~~~~g~~v~LvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~~D~pGl~~~~~~~~~~~ 87 (356)
.++||++.+ |++++|+|||||||||||++|+|...| ..|.|.++|.++...+.... ....+++.
T Consensus 21 ~~is~~i~~--Ge~~~l~G~NGsGKSTLl~~l~G~~~p-----------~~G~i~~~g~~~~~~~~~~~---~~~~i~~v 84 (501)
T PRK10762 21 SGAALNVYP--GRVMALVGENGAGKSTMMKVLTGIYTR-----------DAGSILYLGKEVTFNGPKSS---QEAGIGII 84 (501)
T ss_pred eeeeEEEcC--CeEEEEECCCCCCHHHHHHHHhCCCCC-----------CCcEEEECCEECCCCCHHHH---HhCCEEEE
Confidence 689999999 889999999999999999999999876 78999999988643221110 11234444
Q ss_pred ccccccccc---hhHHHHHHhc------CChHHHHHHHHHHHHHccC--ccccccCcccccceecccee---------ee
Q 018394 88 RQVIAVSKS---SDIVLMVLDA------SKSEGHRQILTKELEAVGL--RLNKRPPQIYFKKKKTGGIS---------FN 147 (356)
Q Consensus 88 ~~~~~~~~~---~d~i~~v~d~------~~~~~~~~~i~~~L~~~~i--~l~~~~~~lS~g~~qr~~ia---------l~ 147 (356)
.|....+.. .+.+.+.... .......+.+.+.|+.+++ ..++++.+||+||+||+.|| ++
T Consensus 85 ~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lll 164 (501)
T PRK10762 85 HQELNLIPQLTIAENIFLGREFVNRFGRIDWKKMYAEADKLLARLNLRFSSDKLVGELSIGEQQMVEIAKVLSFESKVII 164 (501)
T ss_pred EcchhccCCCcHHHHhhhccccccccCccCHHHHHHHHHHHHHHcCCCCCccCchhhCCHHHHHHHHHHHHHhcCCCEEE
Confidence 454333332 3444332111 1112233467888999999 57888999999999999998 99
Q ss_pred ecCCCCCCCHHHHHHH---HHHhcc-cCcEEEEccCCCHH
Q 018394 148 STLPLTHVDEKLCYQI---LHEYKI-HNAEVLFREDATVD 183 (356)
Q Consensus 148 ~DEp~~~LD~~~~~~i---l~~l~~-~~~~i~~thd~~~~ 183 (356)
+||||++||+.....+ ++.+.. +.++|++|||....
T Consensus 165 LDEPt~~LD~~~~~~l~~~l~~l~~~~~tvii~sHd~~~~ 204 (501)
T PRK10762 165 MDEPTDALTDTETESLFRVIRELKSQGRGIVYISHRLKEI 204 (501)
T ss_pred EeCCcCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHH
Confidence 9999999999885555 455533 45899999997653
No 184
>PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.83 E-value=3.7e-20 Score=173.70 Aligned_cols=175 Identities=22% Similarity=0.221 Sum_probs=120.3
Q ss_pred CCCCeEEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCccccccccccccceEEEECCEeecccCccccccccccCcccc
Q 018394 8 AGEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRG 87 (356)
Q Consensus 8 ~~~s~~v~~~~g~~v~LvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~~D~pGl~~~~~~~~~~~ 87 (356)
.++||++.+ |++++|+|+||||||||+++|+|...+ ..|.+.++|.++.....+ .. .....+++.
T Consensus 19 ~~vsl~i~~--Ge~~~l~G~nGsGKSTLl~~i~Gl~~~-----------~~G~i~~~g~~~~~~~~~-~~-~~~~~i~~v 83 (275)
T PRK13639 19 KGINFKAEK--GEMVALLGPNGAGKSTLFLHFNGILKP-----------TSGEVLIKGEPIKYDKKS-LL-EVRKTVGIV 83 (275)
T ss_pred eeeEEEEcC--CCEEEEECCCCCCHHHHHHHHhCCCCC-----------CccEEEECCEECccccch-HH-HHHhheEEE
Confidence 689999999 889999999999999999999999876 789999999887421110 00 011223444
Q ss_pred cccc--cc--ccchhHHHHHH-h-cCChHHHHHHHHHHHHHccC--ccccccCcccccceecccee---------eeecC
Q 018394 88 RQVI--AV--SKSSDIVLMVL-D-ASKSEGHRQILTKELEAVGL--RLNKRPPQIYFKKKKTGGIS---------FNSTL 150 (356)
Q Consensus 88 ~~~~--~~--~~~~d~i~~v~-d-~~~~~~~~~~i~~~L~~~~i--~l~~~~~~lS~g~~qr~~ia---------l~~DE 150 (356)
.|.. .. ....+.+.+.. + ........+.+.++++.+++ ..++++..||+||+||+.+| +++||
T Consensus 84 ~q~~~~~~~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LS~Gq~qrv~laral~~~p~llllDE 163 (275)
T PRK13639 84 FQNPDDQLFAPTVEEDVAFGPLNLGLSKEEVEKRVKEALKAVGMEGFENKPPHHLSGGQKKRVAIAGILAMKPEIIVLDE 163 (275)
T ss_pred eeChhhhhccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeC
Confidence 4432 11 12234443221 1 11122234567788999999 67889999999999999988 99999
Q ss_pred CCCCCCHHHHHHHH---HHhcc-cCcEEEEccCCCHHHHHHHHhccccccceEEEeecCC
Q 018394 151 PLTHVDEKLCYQIL---HEYKI-HNAEVLFREDATVDDLIDVIEGNRKYMKCVYVYNKID 206 (356)
Q Consensus 151 p~~~LD~~~~~~il---~~l~~-~~~~i~~thd~~~~~~~~~i~~~~~~~p~i~v~NK~D 206 (356)
||++||+.....++ .++.. +.+++++||+.+.... ++..+++++..-
T Consensus 164 Pt~gLD~~~~~~l~~~l~~l~~~~~til~vtH~~~~~~~---------~~d~i~~l~~G~ 214 (275)
T PRK13639 164 PTSGLDPMGASQIMKLLYDLNKEGITIIISTHDVDLVPV---------YADKVYVMSDGK 214 (275)
T ss_pred CCcCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHH---------hCCEEEEEECCE
Confidence 99999999865554 44433 4589999999764321 235667776543
No 185
>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.83 E-value=2.2e-20 Score=171.91 Aligned_cols=156 Identities=15% Similarity=0.095 Sum_probs=109.9
Q ss_pred CCCCeEEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCccccccccccccceEEEECCEeecccCccccccccccCcccc
Q 018394 8 AGEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRG 87 (356)
Q Consensus 8 ~~~s~~v~~~~g~~v~LvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~~D~pGl~~~~~~~~~~~ 87 (356)
++++|++.+ |++++|+|+||||||||+++|+|...| ..|.+.++|.++.-.+... .....++.
T Consensus 20 ~~vsl~i~~--Ge~~~i~G~nGsGKSTLl~~l~Gl~~p-----------~~G~i~~~g~~i~~~~~~~----~~~~i~~~ 82 (241)
T PRK14250 20 KDISVKFEG--GAIYTIVGPSGAGKSTLIKLINRLIDP-----------TEGSILIDGVDIKTIDVID----LRRKIGMV 82 (241)
T ss_pred eeeeEEEcC--CCEEEEECCCCCCHHHHHHHHhCCCCC-----------CCcEEEECCEEhhhcChHH----hhhcEEEE
Confidence 689999999 789999999999999999999999766 7999999998764322111 11223333
Q ss_pred ccccccccc--hhHHHHHHhcCChHHHHHHHHHHHHHccC---ccccccCcccccceecccee---------eeecCCCC
Q 018394 88 RQVIAVSKS--SDIVLMVLDASKSEGHRQILTKELEAVGL---RLNKRPPQIYFKKKKTGGIS---------FNSTLPLT 153 (356)
Q Consensus 88 ~~~~~~~~~--~d~i~~v~d~~~~~~~~~~i~~~L~~~~i---~l~~~~~~lS~g~~qr~~ia---------l~~DEp~~ 153 (356)
.|....+.. .+.+.+...... .....+.+.++.+++ ..++.+..||+||+||++++ +++||||+
T Consensus 83 ~q~~~~~~~tv~e~l~~~~~~~~--~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~ 160 (241)
T PRK14250 83 FQQPHLFEGTVKDNIEYGPMLKG--EKNVDVEYYLSIVGLNKEYATRDVKNLSGGEAQRVSIARTLANNPEVLLLDEPTS 160 (241)
T ss_pred ecCchhchhhHHHHHhcchhhcC--cHHHHHHHHHHHcCCCHHHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcc
Confidence 443322221 122211111111 123456778888888 35788999999999999998 99999999
Q ss_pred CCCHHHHHHH---HHHhcc--cCcEEEEccCCCH
Q 018394 154 HVDEKLCYQI---LHEYKI--HNAEVLFREDATV 182 (356)
Q Consensus 154 ~LD~~~~~~i---l~~l~~--~~~~i~~thd~~~ 182 (356)
+||......+ ++.+.. +.+++++||+...
T Consensus 161 ~LD~~~~~~l~~~l~~~~~~~g~tii~~sH~~~~ 194 (241)
T PRK14250 161 ALDPTSTEIIEELIVKLKNKMNLTVIWITHNMEQ 194 (241)
T ss_pred cCCHHHHHHHHHHHHHHHHhCCCEEEEEeccHHH
Confidence 9999885554 444432 4599999999764
No 186
>PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional
Probab=99.83 E-value=4.9e-20 Score=172.10 Aligned_cols=172 Identities=19% Similarity=0.187 Sum_probs=117.5
Q ss_pred CCCCeEEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCccccccccccccceEEEECCEeecccCccccccccccCcccc
Q 018394 8 AGEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRG 87 (356)
Q Consensus 8 ~~~s~~v~~~~g~~v~LvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~~D~pGl~~~~~~~~~~~ 87 (356)
.++||++.+ |++++|+|+|||||||||++|+|...| .+|.|.++|.++.... +.. ....+++.
T Consensus 30 ~~vsl~i~~--Ge~~~i~G~NGsGKSTLl~~l~Gl~~p-----------~~G~i~~~g~~~~~~~-~~~---~~~~i~~v 92 (267)
T PRK15112 30 KPLSFTLRE--GQTLAIIGENGSGKSTLAKMLAGMIEP-----------TSGELLIDDHPLHFGD-YSY---RSQRIRMI 92 (267)
T ss_pred eeeeEEecC--CCEEEEEcCCCCCHHHHHHHHhCCCCC-----------CCCEEEECCEECCCCc-hhh---HhccEEEE
Confidence 588999999 889999999999999999999999876 7999999998775211 111 11223444
Q ss_pred ccccc--cccc---hhHHHHHHhc---CChHHHHHHHHHHHHHccC---ccccccCcccccceecccee---------ee
Q 018394 88 RQVIA--VSKS---SDIVLMVLDA---SKSEGHRQILTKELEAVGL---RLNKRPPQIYFKKKKTGGIS---------FN 147 (356)
Q Consensus 88 ~~~~~--~~~~---~d~i~~v~d~---~~~~~~~~~i~~~L~~~~i---~l~~~~~~lS~g~~qr~~ia---------l~ 147 (356)
.|... .... .+.+.+.... .......+.+.+.|+.+++ ..++.+..||+||+||++++ ++
T Consensus 93 ~q~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrv~laral~~~p~lll 172 (267)
T PRK15112 93 FQDPSTSLNPRQRISQILDFPLRLNTDLEPEQREKQIIETLRQVGLLPDHASYYPHMLAPGQKQRLGLARALILRPKVII 172 (267)
T ss_pred ecCchhhcCcchhHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCChHHHhcCchhcCHHHHHHHHHHHHHHhCCCEEE
Confidence 44321 1111 2333222211 1122233567788999998 35677899999999999998 99
Q ss_pred ecCCCCCCCHHHHHHH---HHHhcc--cCcEEEEccCCCHHHHHHHHhccccccceEEEeecC
Q 018394 148 STLPLTHVDEKLCYQI---LHEYKI--HNAEVLFREDATVDDLIDVIEGNRKYMKCVYVYNKI 205 (356)
Q Consensus 148 ~DEp~~~LD~~~~~~i---l~~l~~--~~~~i~~thd~~~~~~~~~i~~~~~~~p~i~v~NK~ 205 (356)
+||||++||+.....+ |.++.. +.++|++||+.+.... .+..+++++..
T Consensus 173 LDEPt~~LD~~~~~~l~~~l~~~~~~~g~tviivsH~~~~~~~---------~~d~i~~l~~G 226 (267)
T PRK15112 173 ADEALASLDMSMRSQLINLMLELQEKQGISYIYVTQHLGMMKH---------ISDQVLVMHQG 226 (267)
T ss_pred EcCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEeCCHHHHHH---------hcCEEEEEECC
Confidence 9999999999885544 444432 4589999999754321 13556666654
No 187
>COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.83 E-value=2.9e-20 Score=165.94 Aligned_cols=162 Identities=17% Similarity=0.193 Sum_probs=123.0
Q ss_pred CCCCeEEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCccccccccccccceEEEECCEeeccc--CccccccccccCcc
Q 018394 8 AGEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLL--DLPGIIEGASEGKG 85 (356)
Q Consensus 8 ~~~s~~v~~~~g~~v~LvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~~--D~pGl~~~~~~~~~ 85 (356)
.++||++++ |++.|++|+|||||||+|++|.|...| ++|.|.|+|.++... |.-|+.+ +..|
T Consensus 19 ~~isf~v~~--G~i~GllG~NGAGKTTtfRmILglle~-----------~~G~I~~~g~~~~~~~~~rIGyLP---EERG 82 (300)
T COG4152 19 DNISFEVPP--GEIFGLLGPNGAGKTTTFRMILGLLEP-----------TEGEITWNGGPLSQEIKNRIGYLP---EERG 82 (300)
T ss_pred cceeeeecC--CeEEEeecCCCCCccchHHHHhccCCc-----------cCceEEEcCcchhhhhhhhcccCh---hhhc
Confidence 589999999 889999999999999999999999877 899999999887543 2223321 2222
Q ss_pred ccccccccccchhHHHHHHhc--CChHHHHHHHHHHHHHccC--ccccccCcccccceecccee---------eeecCCC
Q 018394 86 RGRQVIAVSKSSDIVLMVLDA--SKSEGHRQILTKELEAVGL--RLNKRPPQIYFKKKKTGGIS---------FNSTLPL 152 (356)
Q Consensus 86 ~~~~~~~~~~~~d~i~~v~d~--~~~~~~~~~i~~~L~~~~i--~l~~~~~~lS~g~~qr~~ia---------l~~DEp~ 152 (356)
+.+. ....|.+.+.... ....+-...+..+|+++++ ...++..+||.|++|++.+- +++||||
T Consensus 83 Ly~k----~tv~dql~yla~LkGm~~~e~~~~~~~wLer~~i~~~~~~kIk~LSKGnqQKIQfisaviHePeLlILDEPF 158 (300)
T COG4152 83 LYPK----MTVEDQLKYLAELKGMPKAEIQKKLQAWLERLEIVGKKTKKIKELSKGNQQKIQFISAVIHEPELLILDEPF 158 (300)
T ss_pred cCcc----CcHHHHHHHHHHhcCCcHHHHHHHHHHHHHhccccccccchHHHhhhhhhHHHHHHHHHhcCCCEEEecCCc
Confidence 2121 2335666665443 3444556678999999999 78889999999999998643 9999999
Q ss_pred CCCCHHH---HHHHHHHhcc-cCcEEEEccCCC-HHHHHHHH
Q 018394 153 THVDEKL---CYQILHEYKI-HNAEVLFREDAT-VDDLIDVI 189 (356)
Q Consensus 153 ~~LD~~~---~~~il~~l~~-~~~~i~~thd~~-~~~~~~~i 189 (356)
|||||-+ +++.+.+++. +.|++++||.++ .+++||.+
T Consensus 159 SGLDPVN~elLk~~I~~lk~~GatIifSsH~Me~vEeLCD~l 200 (300)
T COG4152 159 SGLDPVNVELLKDAIFELKEEGATIIFSSHRMEHVEELCDRL 200 (300)
T ss_pred cCCChhhHHHHHHHHHHHHhcCCEEEEecchHHHHHHHhhhh
Confidence 9999976 4566667764 569999999976 45677654
No 188
>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL. Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se.
Probab=99.83 E-value=1.9e-20 Score=170.26 Aligned_cols=163 Identities=20% Similarity=0.132 Sum_probs=109.9
Q ss_pred CCCCeEEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCccccccccccccceEEEEC--CE--eecccCccccccccccC
Q 018394 8 AGEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYN--DT--KIQLLDLPGIIEGASEG 83 (356)
Q Consensus 8 ~~~s~~v~~~~g~~v~LvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~--g~--~i~~~D~pGl~~~~~~~ 83 (356)
.++||++.+ |++++|+|+||||||||+++|+|...+ ..|.|.++ |. ++...+...+.......
T Consensus 25 ~~vs~~i~~--Ge~~~l~G~nGsGKSTLl~~i~G~~~~-----------~~G~i~~~~~g~~~~~~~~~~~~~~~~~~~~ 91 (224)
T TIGR02324 25 KNVSLTVNA--GECVALSGPSGAGKSTLLKSLYANYLP-----------DSGRILVRHEGAWVDLAQASPREVLEVRRKT 91 (224)
T ss_pred ecceEEECC--CCEEEEECCCCCCHHHHHHHHhCCCCC-----------CCCeEEEecCCCccchhhcCHHHHHHHHhcc
Confidence 589999999 889999999999999999999999866 78999997 42 33211111100001122
Q ss_pred ccccccccccccc---hhHHHHHHhc--CChHHHHHHHHHHHHHccC---ccccccCcccccceecccee---------e
Q 018394 84 KGRGRQVIAVSKS---SDIVLMVLDA--SKSEGHRQILTKELEAVGL---RLNKRPPQIYFKKKKTGGIS---------F 146 (356)
Q Consensus 84 ~~~~~~~~~~~~~---~d~i~~v~d~--~~~~~~~~~i~~~L~~~~i---~l~~~~~~lS~g~~qr~~ia---------l 146 (356)
.++..|....+.. .+.+.+.+.. .......+.+.+.++.+++ ..++++.+||+|++||++++ +
T Consensus 92 i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrl~laral~~~p~ll 171 (224)
T TIGR02324 92 IGYVSQFLRVIPRVSALEVVAEPLLERGVPREAARARARELLARLNIPERLWHLPPATFSGGEQQRVNIARGFIADYPIL 171 (224)
T ss_pred eEEEecccccCCCccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhhCCcccCCHHHHHHHHHHHHHhcCCCEE
Confidence 3444444333322 2333322211 1122234567788899998 24678899999999999988 9
Q ss_pred eecCCCCCCCHHHHHHHHH---Hhcc-cCcEEEEccCCCHH
Q 018394 147 NSTLPLTHVDEKLCYQILH---EYKI-HNAEVLFREDATVD 183 (356)
Q Consensus 147 ~~DEp~~~LD~~~~~~il~---~l~~-~~~~i~~thd~~~~ 183 (356)
++||||++||+.....+++ .+.. +.+++++||+....
T Consensus 172 llDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vsH~~~~~ 212 (224)
T TIGR02324 172 LLDEPTASLDAANRQVVVELIAEAKARGAALIGIFHDEEVR 212 (224)
T ss_pred EEcCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHH
Confidence 9999999999998555544 4433 45899999996543
No 189
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.83 E-value=2.8e-20 Score=167.33 Aligned_cols=154 Identities=17% Similarity=0.127 Sum_probs=109.8
Q ss_pred CCCCeEEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCccccccccccccceEEEECCEeecccCccccccccccCcccc
Q 018394 8 AGEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRG 87 (356)
Q Consensus 8 ~~~s~~v~~~~g~~v~LvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~~D~pGl~~~~~~~~~~~ 87 (356)
.+++|++.+ |++++|+|+||||||||+++|+|...+ ..|.+.++|.++.. +.+ ....++.
T Consensus 19 ~~is~~i~~--Ge~~~i~G~nGsGKSTLl~~l~G~~~~-----------~~G~i~~~g~~~~~---~~~----~~~~~~~ 78 (207)
T PRK13539 19 SGLSFTLAA--GEALVLTGPNGSGKTTLLRLIAGLLPP-----------AAGTIKLDGGDIDD---PDV----AEACHYL 78 (207)
T ss_pred eceEEEEcC--CCEEEEECCCCCCHHHHHHHHhCCCCC-----------CCceEEECCEeCcc---hhh----HhhcEEe
Confidence 689999999 889999999999999999999999766 78999999987531 111 1122222
Q ss_pred cccccc---ccchhHHHHHHhcCChHHHHHHHHHHHHHccC--ccccccCcccccceecccee---------eeecCCCC
Q 018394 88 RQVIAV---SKSSDIVLMVLDASKSEGHRQILTKELEAVGL--RLNKRPPQIYFKKKKTGGIS---------FNSTLPLT 153 (356)
Q Consensus 88 ~~~~~~---~~~~d~i~~v~d~~~~~~~~~~i~~~L~~~~i--~l~~~~~~lS~g~~qr~~ia---------l~~DEp~~ 153 (356)
.+.... ....+.+.+....... ..+.+.+.++.+++ ..++++..||+||+||++++ +++||||+
T Consensus 79 ~~~~~~~~~~tv~~~l~~~~~~~~~--~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~ 156 (207)
T PRK13539 79 GHRNAMKPALTVAENLEFWAAFLGG--EELDIAAALEAVGLAPLAHLPFGYLSAGQKRRVALARLLVSNRPIWILDEPTA 156 (207)
T ss_pred cCCCcCCCCCcHHHHHHHHHHhcCC--cHHHHHHHHHHcCCHHHHcCChhhcCHHHHHHHHHHHHHhcCCCEEEEeCCcc
Confidence 222111 2224444333222111 12347788999998 56788899999999999988 99999999
Q ss_pred CCCHHHHHHHHHHhc----ccCcEEEEccCCCHH
Q 018394 154 HVDEKLCYQILHEYK----IHNAEVLFREDATVD 183 (356)
Q Consensus 154 ~LD~~~~~~il~~l~----~~~~~i~~thd~~~~ 183 (356)
+||+.....+++.+. .+.+++++||+....
T Consensus 157 ~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~ 190 (207)
T PRK13539 157 ALDAAAVALFAELIRAHLAQGGIVIAATHIPLGL 190 (207)
T ss_pred cCCHHHHHHHHHHHHHHHHCCCEEEEEeCCchhh
Confidence 999988655544443 245899999997643
No 190
>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK. Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.
Probab=99.83 E-value=3.5e-20 Score=171.61 Aligned_cols=163 Identities=18% Similarity=0.118 Sum_probs=109.2
Q ss_pred CCCCeEEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCccccccccccccceEEEECCEe-----ecccCcccccccccc
Q 018394 8 AGEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTK-----IQLLDLPGIIEGASE 82 (356)
Q Consensus 8 ~~~s~~v~~~~g~~v~LvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~-----i~~~D~pGl~~~~~~ 82 (356)
.+++|++.+ |++++|+|+||||||||+++|+|...+ ..|.+.++|.+ +...+..........
T Consensus 20 ~~isl~i~~--Ge~~~i~G~nGsGKSTLl~~l~G~~~~-----------~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~ 86 (253)
T TIGR02323 20 RDVSFDLYP--GEVLGIVGESGSGKSTLLGCLAGRLAP-----------DHGTATYIMRSGAELELYQLSEAERRRLMRT 86 (253)
T ss_pred ecceEEEeC--CcEEEEECCCCCCHHHHHHHHhCCCCC-----------CCcEEEEecccccccccccCCHHHHHHhhhc
Confidence 689999999 889999999999999999999999876 78999999865 332221110000011
Q ss_pred Cccccccccc--cc---cchhHHHHHH---hcCChHHHHHHHHHHHHHccC---ccccccCcccccceecccee------
Q 018394 83 GKGRGRQVIA--VS---KSSDIVLMVL---DASKSEGHRQILTKELEAVGL---RLNKRPPQIYFKKKKTGGIS------ 145 (356)
Q Consensus 83 ~~~~~~~~~~--~~---~~~d~i~~v~---d~~~~~~~~~~i~~~L~~~~i---~l~~~~~~lS~g~~qr~~ia------ 145 (356)
.+++..|... .. ...+.+...+ .........+.+.++++.+++ .+++.+..||+||+||++||
T Consensus 87 ~i~~~~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~LSgG~~qrv~laral~~~ 166 (253)
T TIGR02323 87 EWGFVHQNPRDGLRMRVSAGANIGERLMAIGARHYGNIRAAAHDWLEEVEIDPTRIDDLPRAFSGGMQQRLQIARNLVTR 166 (253)
T ss_pred ceEEEEeCcccccCccccHHHHHHHHHHHhcccchHHHHHHHHHHHHHcCCChhhhhcCchhcCHHHHHHHHHHHHHhcC
Confidence 2333333321 01 1112222111 111111223567788999988 46788999999999999998
Q ss_pred ---eeecCCCCCCCHHHHHHHHH---Hhcc--cCcEEEEccCCCHH
Q 018394 146 ---FNSTLPLTHVDEKLCYQILH---EYKI--HNAEVLFREDATVD 183 (356)
Q Consensus 146 ---l~~DEp~~~LD~~~~~~il~---~l~~--~~~~i~~thd~~~~ 183 (356)
+++||||++||+.....+++ .+.. +.++|++||+....
T Consensus 167 p~vlllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~vsH~~~~~ 212 (253)
T TIGR02323 167 PRLVFMDEPTGGLDVSVQARLLDLLRGLVRDLGLAVIIVTHDLGVA 212 (253)
T ss_pred CCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHH
Confidence 99999999999988655544 4332 45999999997543
No 191
>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=99.83 E-value=2.8e-20 Score=169.82 Aligned_cols=159 Identities=21% Similarity=0.194 Sum_probs=110.7
Q ss_pred CCCCeEEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCccccccccccccceEEEECCEeecccCccccccccccCcccc
Q 018394 8 AGEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRG 87 (356)
Q Consensus 8 ~~~s~~v~~~~g~~v~LvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~~D~pGl~~~~~~~~~~~ 87 (356)
.++||++.+ |++++|+|+||||||||+++|+|...+ ..|++.++|.++...+.... .....++.
T Consensus 17 ~~vs~~i~~--Ge~~~l~G~nGsGKSTLl~~l~G~~~~-----------~~G~i~~~g~~~~~~~~~~~---~~~~i~~~ 80 (230)
T TIGR03410 17 RGVSLEVPK--GEVTCVLGRNGVGKTTLLKTLMGLLPV-----------KSGSIRLDGEDITKLPPHER---ARAGIAYV 80 (230)
T ss_pred cceeeEECC--CCEEEEECCCCCCHHHHHHHHhCCCCC-----------CCCEEEECCEECCCCCHHHH---HHhCeEEe
Confidence 689999999 889999999999999999999999876 79999999987654332110 11233444
Q ss_pred ccccccccc---hhHHHHHHhcCChHHHHHHHHHHHHHcc-C--ccccccCcccccceecccee---------eeecCCC
Q 018394 88 RQVIAVSKS---SDIVLMVLDASKSEGHRQILTKELEAVG-L--RLNKRPPQIYFKKKKTGGIS---------FNSTLPL 152 (356)
Q Consensus 88 ~~~~~~~~~---~d~i~~v~d~~~~~~~~~~i~~~L~~~~-i--~l~~~~~~lS~g~~qr~~ia---------l~~DEp~ 152 (356)
.|....+.. .+.+.+....... ...+...+.++.++ + ..++.+..||+|++||++++ +++||||
T Consensus 81 ~q~~~~~~~~tv~~~l~~~~~~~~~-~~~~~~~~~l~~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~illlDEPt 159 (230)
T TIGR03410 81 PQGREIFPRLTVEENLLTGLAALPR-RSRKIPDEIYELFPVLKEMLGRRGGDLSGGQQQQLAIARALVTRPKLLLLDEPT 159 (230)
T ss_pred ccCCcccCCCcHHHHHHHHHHhcCc-chHHHHHHHHHHHHhHHHHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEecCCc
Confidence 444333322 3333332222211 11233455666665 3 57888999999999999988 9999999
Q ss_pred CCCCHHHHHH---HHHHhcc--cCcEEEEccCCCHH
Q 018394 153 THVDEKLCYQ---ILHEYKI--HNAEVLFREDATVD 183 (356)
Q Consensus 153 ~~LD~~~~~~---il~~l~~--~~~~i~~thd~~~~ 183 (356)
++||+..... +|.++.. +.+++++||+....
T Consensus 160 ~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~ 195 (230)
T TIGR03410 160 EGIQPSIIKDIGRVIRRLRAEGGMAILLVEQYLDFA 195 (230)
T ss_pred ccCCHHHHHHHHHHHHHHHHcCCcEEEEEeCCHHHH
Confidence 9999988554 4445443 45999999997543
No 192
>PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.83 E-value=3.3e-20 Score=174.22 Aligned_cols=173 Identities=17% Similarity=0.152 Sum_probs=122.2
Q ss_pred CCCCeEEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCccccccccccccceEEEECCEeecccCccccccccccCcccc
Q 018394 8 AGEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRG 87 (356)
Q Consensus 8 ~~~s~~v~~~~g~~v~LvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~~D~pGl~~~~~~~~~~~ 87 (356)
.+++|++.+ |++++|+|+||||||||+++|+|...+ ..|.+.++|.++...+... ....+++.
T Consensus 24 ~~v~l~i~~--Ge~~~I~G~nGsGKSTLl~~l~Gl~~~-----------~~G~i~~~g~~i~~~~~~~----~~~~i~~v 86 (277)
T PRK13642 24 NGVSFSITK--GEWVSIIGQNGSGKSTTARLIDGLFEE-----------FEGKVKIDGELLTAENVWN----LRRKIGMV 86 (277)
T ss_pred eeeEEEEcC--CCEEEEECCCCCcHHHHHHHHhcCCCC-----------CCCEEEECCEECCcCCHHH----HhcceEEE
Confidence 689999999 889999999999999999999999876 8999999998764322111 11234444
Q ss_pred ccccc----cccchhHHHHHHhc--CChHHHHHHHHHHHHHccC--ccccccCcccccceecccee---------eeecC
Q 018394 88 RQVIA----VSKSSDIVLMVLDA--SKSEGHRQILTKELEAVGL--RLNKRPPQIYFKKKKTGGIS---------FNSTL 150 (356)
Q Consensus 88 ~~~~~----~~~~~d~i~~v~d~--~~~~~~~~~i~~~L~~~~i--~l~~~~~~lS~g~~qr~~ia---------l~~DE 150 (356)
.|... .....+.+.+.... .......+.+.+.++.+++ ..++++..||+||+||+.|| +++||
T Consensus 87 ~q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~lAraL~~~p~llllDE 166 (277)
T PRK13642 87 FQNPDNQFVGATVEDDVAFGMENQGIPREEMIKRVDEALLAVNMLDFKTREPARLSGGQKQRVAVAGIIALRPEIIILDE 166 (277)
T ss_pred EECHHHhhccCCHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHhHhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeC
Confidence 44321 11224444332221 1222223567788898998 67888999999999999998 99999
Q ss_pred CCCCCCHHHHHHHHHH---hcc--cCcEEEEccCCCHHHHHHHHhccccccceEEEeecCCC
Q 018394 151 PLTHVDEKLCYQILHE---YKI--HNAEVLFREDATVDDLIDVIEGNRKYMKCVYVYNKIDV 207 (356)
Q Consensus 151 p~~~LD~~~~~~il~~---l~~--~~~~i~~thd~~~~~~~~~i~~~~~~~p~i~v~NK~Dl 207 (356)
||++||+.....+++. +.. +.+++++||+...... +..+++++..-+
T Consensus 167 Pt~~LD~~~~~~l~~~l~~l~~~~g~tiil~sH~~~~~~~----------~d~i~~l~~G~i 218 (277)
T PRK13642 167 STSMLDPTGRQEIMRVIHEIKEKYQLTVLSITHDLDEAAS----------SDRILVMKAGEI 218 (277)
T ss_pred CcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHh----------CCEEEEEECCEE
Confidence 9999999986555444 433 4599999999765432 256667765543
No 193
>PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.83 E-value=2.9e-20 Score=175.01 Aligned_cols=172 Identities=19% Similarity=0.164 Sum_probs=120.7
Q ss_pred CCCCeEEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCccccccccccccc---eEEEECCEeecccCccccccccccCc
Q 018394 8 AGEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIP---GIIHYNDTKIQLLDLPGIIEGASEGK 84 (356)
Q Consensus 8 ~~~s~~v~~~~g~~v~LvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~---G~i~~~g~~i~~~D~pGl~~~~~~~~ 84 (356)
.+++|++.+ |++++|+|+||||||||+++|+|...+ .. |.+.++|.++...+... ....+
T Consensus 24 ~~v~l~i~~--Ge~~~I~G~nGaGKSTLl~~l~G~~~p-----------~~g~~G~i~i~g~~~~~~~~~~----~~~~i 86 (282)
T PRK13640 24 NDISFSIPR--GSWTALIGHNGSGKSTISKLINGLLLP-----------DDNPNSKITVDGITLTAKTVWD----IREKV 86 (282)
T ss_pred eeEEEEEcC--CCEEEEECCCCCcHHHHHHHHhcccCC-----------CCCCCcEEEECCEECCcCCHHH----HHhhe
Confidence 688999999 889999999999999999999999865 44 89999998875322111 11233
Q ss_pred cccccccc-c---ccchhHHHHHHhc--CChHHHHHHHHHHHHHccC--ccccccCcccccceecccee---------ee
Q 018394 85 GRGRQVIA-V---SKSSDIVLMVLDA--SKSEGHRQILTKELEAVGL--RLNKRPPQIYFKKKKTGGIS---------FN 147 (356)
Q Consensus 85 ~~~~~~~~-~---~~~~d~i~~v~d~--~~~~~~~~~i~~~L~~~~i--~l~~~~~~lS~g~~qr~~ia---------l~ 147 (356)
++..|... . ....+.+.+.... .......+.+.++++.+++ .+++.+..||+||+||++|+ ++
T Consensus 87 g~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LS~G~~qrv~laral~~~P~lll 166 (282)
T PRK13640 87 GIVFQNPDNQFVGATVGDDVAFGLENRAVPRPEMIKIVRDVLADVGMLDYIDSEPANLSGGQKQRVAIAGILAVEPKIII 166 (282)
T ss_pred EEEEECHHHhhccCCHHHHHHhhHHhCCCCHHHHHHHHHHHHHHCCChhHhcCCcccCCHHHHHHHHHHHHHHcCCCEEE
Confidence 44444321 1 1224444432221 1222334567888999999 68899999999999999998 99
Q ss_pred ecCCCCCCCHHHHHHH---HHHhcc--cCcEEEEccCCCHHHHHHHHhccccccceEEEeecCC
Q 018394 148 STLPLTHVDEKLCYQI---LHEYKI--HNAEVLFREDATVDDLIDVIEGNRKYMKCVYVYNKID 206 (356)
Q Consensus 148 ~DEp~~~LD~~~~~~i---l~~l~~--~~~~i~~thd~~~~~~~~~i~~~~~~~p~i~v~NK~D 206 (356)
+||||++||+.....+ |..+.. +.+++++||+.+.... +..+++++..-
T Consensus 167 lDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~~~~~~~----------~d~i~~l~~G~ 220 (282)
T PRK13640 167 LDESTSMLDPAGKEQILKLIRKLKKKNNLTVISITHDIDEANM----------ADQVLVLDDGK 220 (282)
T ss_pred EECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHh----------CCEEEEEECCE
Confidence 9999999999885544 444433 4599999999765432 35566665543
No 194
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=99.83 E-value=3.3e-20 Score=188.37 Aligned_cols=158 Identities=17% Similarity=0.146 Sum_probs=114.6
Q ss_pred CCCCeEEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCccccccccccccceEEEECCEeecccCccccccccccCcccc
Q 018394 8 AGEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRG 87 (356)
Q Consensus 8 ~~~s~~v~~~~g~~v~LvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~~D~pGl~~~~~~~~~~~ 87 (356)
+++||++.+ |++++|+|+|||||||||++|+|...| ..|.|.++|.++...+.... ....+++.
T Consensus 28 ~~vsl~i~~--Ge~~~liG~NGsGKSTLl~~l~Gl~~p-----------~~G~i~~~g~~~~~~~~~~~---~~~~i~~v 91 (510)
T PRK15439 28 KGIDFTLHA--GEVHALLGGNGAGKSTLMKIIAGIVPP-----------DSGTLEIGGNPCARLTPAKA---HQLGIYLV 91 (510)
T ss_pred eeeEEEEcC--CCEEEEECCCCCCHHHHHHHHhCCCCC-----------CceEEEECCEECCCCCHHHH---HhCCEEEE
Confidence 589999999 889999999999999999999999876 78999999987653321111 11223444
Q ss_pred ccccccccc---hhHHHHHHhcCChHHHHHHHHHHHHHccC--ccccccCcccccceecccee---------eeecCCCC
Q 018394 88 RQVIAVSKS---SDIVLMVLDASKSEGHRQILTKELEAVGL--RLNKRPPQIYFKKKKTGGIS---------FNSTLPLT 153 (356)
Q Consensus 88 ~~~~~~~~~---~d~i~~v~d~~~~~~~~~~i~~~L~~~~i--~l~~~~~~lS~g~~qr~~ia---------l~~DEp~~ 153 (356)
.|....+.. .+.+.+... ......+.+.+.|+.+++ .+++++.+||+||+||+.|| +++||||+
T Consensus 92 ~q~~~~~~~~tv~e~l~~~~~--~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~aL~~~p~lllLDEPt~ 169 (510)
T PRK15439 92 PQEPLLFPNLSVKENILFGLP--KRQASMQKMKQLLAALGCQLDLDSSAGSLEVADRQIVEILRGLMRDSRILILDEPTA 169 (510)
T ss_pred eccCccCCCCcHHHHhhcccc--cchHHHHHHHHHHHHcCCCccccCChhhCCHHHHHHHHHHHHHHcCCCEEEEECCCC
Confidence 444333322 343333221 112234567888999999 67889999999999999998 99999999
Q ss_pred CCCHHHHHHHH---HHhcc-cCcEEEEccCCCHH
Q 018394 154 HVDEKLCYQIL---HEYKI-HNAEVLFREDATVD 183 (356)
Q Consensus 154 ~LD~~~~~~il---~~l~~-~~~~i~~thd~~~~ 183 (356)
+||+.....++ +++.. +.++|++|||.+..
T Consensus 170 ~LD~~~~~~l~~~l~~~~~~g~tiiivtHd~~~~ 203 (510)
T PRK15439 170 SLTPAETERLFSRIRELLAQGVGIVFISHKLPEI 203 (510)
T ss_pred CCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHH
Confidence 99998855554 44433 45899999997653
No 195
>PRK13548 hmuV hemin importer ATP-binding subunit; Provisional
Probab=99.83 E-value=5.2e-20 Score=171.10 Aligned_cols=173 Identities=16% Similarity=0.167 Sum_probs=118.7
Q ss_pred CCCCeEEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCccccccccccccceEEEECCEeecccCccccccccccCcccc
Q 018394 8 AGEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRG 87 (356)
Q Consensus 8 ~~~s~~v~~~~g~~v~LvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~~D~pGl~~~~~~~~~~~ 87 (356)
++++|++.+ |++++|+|+|||||||||++|+|...+ ..|.+.++|.++.-.+...+ ....++.
T Consensus 19 ~~is~~i~~--Ge~~~i~G~nGsGKSTLl~~i~G~~~p-----------~~G~i~~~g~~~~~~~~~~~----~~~i~~~ 81 (258)
T PRK13548 19 DDVSLTLRP--GEVVAILGPNGAGKSTLLRALSGELSP-----------DSGEVRLNGRPLADWSPAEL----ARRRAVL 81 (258)
T ss_pred eeeeEEEcC--CCEEEEECCCCCCHHHHHHHHhCCCCC-----------CCCEEEECCEEcccCCHHHh----hhheEEE
Confidence 689999999 889999999999999999999999766 78999999987643221111 1123333
Q ss_pred ccccccc---cchhHHHHHHhcC--ChHHHHHHHHHHHHHccC--ccccccCcccccceecccee---------------
Q 018394 88 RQVIAVS---KSSDIVLMVLDAS--KSEGHRQILTKELEAVGL--RLNKRPPQIYFKKKKTGGIS--------------- 145 (356)
Q Consensus 88 ~~~~~~~---~~~d~i~~v~d~~--~~~~~~~~i~~~L~~~~i--~l~~~~~~lS~g~~qr~~ia--------------- 145 (356)
.|....+ ...+.+.+..... ........+.+.|+.+++ ..++.+.+||+|++||++|+
T Consensus 82 ~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGe~qrv~la~al~~~~~~~~~p~l 161 (258)
T PRK13548 82 PQHSSLSFPFTVEEVVAMGRAPHGLSRAEDDALVAAALAQVDLAHLAGRDYPQLSGGEQQRVQLARVLAQLWEPDGPPRW 161 (258)
T ss_pred ccCCcCCCCCCHHHHHHhhhcccCCCcHHHHHHHHHHHHHcCCHhHhcCCcccCCHHHHHHHHHHHHHhcccccCCCCCE
Confidence 3332221 2244443322111 112233457788999999 67889999999999998765
Q ss_pred eeecCCCCCCCHHHHH---HHHHHhc--ccCcEEEEccCCCHHHHHHHHhccccccceEEEeecCC
Q 018394 146 FNSTLPLTHVDEKLCY---QILHEYK--IHNAEVLFREDATVDDLIDVIEGNRKYMKCVYVYNKID 206 (356)
Q Consensus 146 l~~DEp~~~LD~~~~~---~il~~l~--~~~~~i~~thd~~~~~~~~~i~~~~~~~p~i~v~NK~D 206 (356)
+++||||++||+.... +++.++. .+.++|++||+...... .+..+++++...
T Consensus 162 llLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~---------~~d~i~~l~~G~ 218 (258)
T PRK13548 162 LLLDEPTSALDLAHQHHVLRLARQLAHERGLAVIVVLHDLNLAAR---------YADRIVLLHQGR 218 (258)
T ss_pred EEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHH---------hcCEEEEEECCE
Confidence 5789999999998854 4455554 24589999999764321 235666776543
No 196
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=99.83 E-value=3.7e-20 Score=188.07 Aligned_cols=160 Identities=21% Similarity=0.200 Sum_probs=114.2
Q ss_pred CCCCeEEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCccccccccccccceEEEECCEeecccCccccccccccCcccc
Q 018394 8 AGEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRG 87 (356)
Q Consensus 8 ~~~s~~v~~~~g~~v~LvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~~D~pGl~~~~~~~~~~~ 87 (356)
.++||++.+ |++++|+|+||||||||+++|+|...| ..|.|.++|.++...+... .....+++.
T Consensus 22 ~~vs~~i~~--Ge~~~liG~nGsGKSTLl~~i~Gl~~p-----------~~G~i~~~g~~i~~~~~~~---~~~~~i~~v 85 (510)
T PRK09700 22 KSVNLTVYP--GEIHALLGENGAGKSTLMKVLSGIHEP-----------TKGTITINNINYNKLDHKL---AAQLGIGII 85 (510)
T ss_pred eeeeEEEcC--CcEEEEECCCCCCHHHHHHHHcCCcCC-----------CccEEEECCEECCCCCHHH---HHHCCeEEE
Confidence 689999999 889999999999999999999999866 7899999998765332110 011234444
Q ss_pred ccccccccc---hhHHHHHHh----cCC-----hHHHHHHHHHHHHHccC--ccccccCcccccceecccee--------
Q 018394 88 RQVIAVSKS---SDIVLMVLD----ASK-----SEGHRQILTKELEAVGL--RLNKRPPQIYFKKKKTGGIS-------- 145 (356)
Q Consensus 88 ~~~~~~~~~---~d~i~~v~d----~~~-----~~~~~~~i~~~L~~~~i--~l~~~~~~lS~g~~qr~~ia-------- 145 (356)
.|....+.. .+.+.+... ... .....+.+.+.|+.+++ ..++++.+||+||+||+.||
T Consensus 86 ~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qrv~ia~al~~~p~ 165 (510)
T PRK09700 86 YQELSVIDELTVLENLYIGRHLTKKVCGVNIIDWREMRVRAAMMLLRVGLKVDLDEKVANLSISHKQMLEIAKTLMLDAK 165 (510)
T ss_pred eecccccCCCcHHHHhhhccccccccccccccCHHHHHHHHHHHHHHcCCCCCcccchhhCCHHHHHHHHHHHHHhcCCC
Confidence 444333322 233322110 001 11234567888999999 67889999999999999998
Q ss_pred -eeecCCCCCCCHHHHHHH---HHHhcc-cCcEEEEccCCCHH
Q 018394 146 -FNSTLPLTHVDEKLCYQI---LHEYKI-HNAEVLFREDATVD 183 (356)
Q Consensus 146 -l~~DEp~~~LD~~~~~~i---l~~l~~-~~~~i~~thd~~~~ 183 (356)
+++||||++||+.....+ |+++.. +.++|++|||....
T Consensus 166 lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivsHd~~~~ 208 (510)
T PRK09700 166 VIIMDEPTSSLTNKEVDYLFLIMNQLRKEGTAIVYISHKLAEI 208 (510)
T ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHH
Confidence 999999999999986555 444433 45899999997654
No 197
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.83 E-value=2e-20 Score=166.60 Aligned_cols=155 Identities=12% Similarity=0.036 Sum_probs=109.2
Q ss_pred CCCeEEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCccccccccccccceEEEECCEeecccCccccccccccCccccc
Q 018394 9 GEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGR 88 (356)
Q Consensus 9 ~~s~~v~~~~g~~v~LvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~~D~pGl~~~~~~~~~~~~ 88 (356)
+++|++.+ |++++|+|+||||||||+++|+|...+ ..|.+.++|.++...+.. ..++..
T Consensus 18 ~vs~~i~~--Ge~~~l~G~nGsGKSTLl~~l~G~~~~-----------~~G~i~~~g~~i~~~~~~--------~~~~~~ 76 (195)
T PRK13541 18 DLSITFLP--SAITYIKGANGCGKSSLLRMIAGIMQP-----------SSGNIYYKNCNINNIAKP--------YCTYIG 76 (195)
T ss_pred EEEEEEcC--CcEEEEECCCCCCHHHHHHHHhcCCCC-----------CCcEEEECCcccChhhhh--------hEEecc
Confidence 47889988 889999999999999999999999876 789999999876432110 111112
Q ss_pred cccc---cccchhHHHHHHhcCChHHHHHHHHHHHHHccC--ccccccCcccccceecccee---------eeecCCCCC
Q 018394 89 QVIA---VSKSSDIVLMVLDASKSEGHRQILTKELEAVGL--RLNKRPPQIYFKKKKTGGIS---------FNSTLPLTH 154 (356)
Q Consensus 89 ~~~~---~~~~~d~i~~v~d~~~~~~~~~~i~~~L~~~~i--~l~~~~~~lS~g~~qr~~ia---------l~~DEp~~~ 154 (356)
+... .....+.+.+...... ..+.+.+.++.+++ .+++.+..||+||+||++++ +++||||++
T Consensus 77 ~~~~~~~~~tv~~~l~~~~~~~~---~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~~rl~la~al~~~p~~lllDEP~~~ 153 (195)
T PRK13541 77 HNLGLKLEMTVFENLKFWSEIYN---SAETLYAAIHYFKLHDLLDEKCYSLSSGMQKIVAIARLIACQSDLWLLDEVETN 153 (195)
T ss_pred CCcCCCccCCHHHHHHHHHHhcc---cHHHHHHHHHHcCCHhhhccChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCccc
Confidence 2111 1222344433221111 23456777888888 57888999999999999988 999999999
Q ss_pred CCHHHHHHHHHHhc----ccCcEEEEccCCCHHHHHH
Q 018394 155 VDEKLCYQILHEYK----IHNAEVLFREDATVDDLID 187 (356)
Q Consensus 155 LD~~~~~~il~~l~----~~~~~i~~thd~~~~~~~~ 187 (356)
||+.....+.+.+. .+.+++++||+......++
T Consensus 154 LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~i~~~~ 190 (195)
T PRK13541 154 LSKENRDLLNNLIVMKANSGGIVLLSSHLESSIKSAQ 190 (195)
T ss_pred CCHHHHHHHHHHHHHHHhCCCEEEEEeCCccccchhh
Confidence 99988655544432 3458999999976544443
No 198
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=99.83 E-value=3.3e-20 Score=192.39 Aligned_cols=177 Identities=18% Similarity=0.114 Sum_probs=123.8
Q ss_pred CCCCeEEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCccccccccccccceEEEECCEeecccCccccccccccCcccc
Q 018394 8 AGEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRG 87 (356)
Q Consensus 8 ~~~s~~v~~~~g~~v~LvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~~D~pGl~~~~~~~~~~~ 87 (356)
+++||+|.+ |++++|+|+||||||||+++|+|...+ ..|.|.++|.++.-.+...+. .....+++.
T Consensus 341 ~~vs~~i~~--Ge~~~lvG~nGsGKSTLlk~i~Gl~~p-----------~~G~I~~~g~~i~~~~~~~~~-~~~~~i~~v 406 (623)
T PRK10261 341 EKVSFDLWP--GETLSLVGESGSGKSTTGRALLRLVES-----------QGGEIIFNGQRIDTLSPGKLQ-ALRRDIQFI 406 (623)
T ss_pred eeeEeEEcC--CCEEEEECCCCCCHHHHHHHHHcCCCC-----------CCcEEEECCEECCcCCHHHHH-HhcCCeEEE
Confidence 588999999 889999999999999999999999876 789999999877533211110 112234555
Q ss_pred cccc--cccc---chhHHHHHHhcC---ChHHHHHHHHHHHHHccC---ccccccCcccccceecccee---------ee
Q 018394 88 RQVI--AVSK---SSDIVLMVLDAS---KSEGHRQILTKELEAVGL---RLNKRPPQIYFKKKKTGGIS---------FN 147 (356)
Q Consensus 88 ~~~~--~~~~---~~d~i~~v~d~~---~~~~~~~~i~~~L~~~~i---~l~~~~~~lS~g~~qr~~ia---------l~ 147 (356)
+|.. ..+. ..+.+.+.+... ......+.+.++|+.+++ .+++++.+||+||+||++|| ++
T Consensus 407 ~Q~~~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~~~~~~LSgGqrQRv~iAraL~~~p~lll 486 (623)
T PRK10261 407 FQDPYASLDPRQTVGDSIMEPLRVHGLLPGKAAAARVAWLLERVGLLPEHAWRYPHEFSGGQRQRICIARALALNPKVII 486 (623)
T ss_pred ecCchhhcCCCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCCHHHhhCCcccCCHHHHHHHHHHHHHhcCCCEEE
Confidence 5543 1222 234443322211 122334567889999999 36889999999999999998 99
Q ss_pred ecCCCCCCCHHHHHHHHHH---hcc--cCcEEEEccCCCHHHHHHHHhccccccceEEEeecCCC
Q 018394 148 STLPLTHVDEKLCYQILHE---YKI--HNAEVLFREDATVDDLIDVIEGNRKYMKCVYVYNKIDV 207 (356)
Q Consensus 148 ~DEp~~~LD~~~~~~il~~---l~~--~~~~i~~thd~~~~~~~~~i~~~~~~~p~i~v~NK~Dl 207 (356)
+||||++||.....++++. +.. +.++|++|||.+.... .+..++++...-+
T Consensus 487 lDEPts~LD~~~~~~i~~ll~~l~~~~g~tvi~isHdl~~v~~---------~~dri~vl~~G~i 542 (623)
T PRK10261 487 ADEAVSALDVSIRGQIINLLLDLQRDFGIAYLFISHDMAVVER---------ISHRVAVMYLGQI 542 (623)
T ss_pred EeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHH---------hCCEEEEEECCEE
Confidence 9999999999886555544 432 4589999999765432 2356677665443
No 199
>PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.83 E-value=6e-20 Score=173.42 Aligned_cols=161 Identities=14% Similarity=0.131 Sum_probs=110.3
Q ss_pred CCCCeEEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCccccccccccccceEEEECCEeecc-c-CccccccccccCcc
Q 018394 8 AGEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQL-L-DLPGIIEGASEGKG 85 (356)
Q Consensus 8 ~~~s~~v~~~~g~~v~LvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~-~-D~pGl~~~~~~~~~ 85 (356)
.++||++.+ |++++|+|+||||||||+++|+|...+ ..|.+.++|.++.. . +.... ......++
T Consensus 28 ~~is~~i~~--Ge~~~l~G~nGsGKSTLl~~l~Gl~~p-----------~~G~i~~~g~~i~~~~~~~~~~-~~~~~~i~ 93 (289)
T PRK13645 28 NNTSLTFKK--NKVTCVIGTTGSGKSTMIQLTNGLIIS-----------ETGQTIVGDYAIPANLKKIKEV-KRLRKEIG 93 (289)
T ss_pred eeeEEEEeC--CCEEEEECCCCCCHHHHHHHHhcCCCC-----------CCceEEECCEEccccccccccH-HHHhccEE
Confidence 688999999 889999999999999999999999876 78999999987631 0 10000 00112233
Q ss_pred ccccccc--cc--cchhHHHHHHhc--CChHHHHHHHHHHHHHccC---ccccccCcccccceecccee---------ee
Q 018394 86 RGRQVIA--VS--KSSDIVLMVLDA--SKSEGHRQILTKELEAVGL---RLNKRPPQIYFKKKKTGGIS---------FN 147 (356)
Q Consensus 86 ~~~~~~~--~~--~~~d~i~~v~d~--~~~~~~~~~i~~~L~~~~i---~l~~~~~~lS~g~~qr~~ia---------l~ 147 (356)
+..|... .+ ...+.+.+.... .......+.+.+.++.+++ ..++.+..||+||+||++++ ++
T Consensus 94 ~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~ll~~~~L~~~~~~~~~~~LS~Gq~qrv~laral~~~p~lLl 173 (289)
T PRK13645 94 LVFQFPEYQLFQETIEKDIAFGPVNLGENKQEAYKKVPELLKLVQLPEDYVKRSPFELSGGQKRRVALAGIIAMDGNTLV 173 (289)
T ss_pred EEEeCcchhhhhhHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCChhHhcCChhhCCHHHHHHHHHHHHHHhCCCEEE
Confidence 3343321 11 223333332211 1122223456778888888 46788999999999999998 99
Q ss_pred ecCCCCCCCHHHHHHH---HHHhcc--cCcEEEEccCCCH
Q 018394 148 STLPLTHVDEKLCYQI---LHEYKI--HNAEVLFREDATV 182 (356)
Q Consensus 148 ~DEp~~~LD~~~~~~i---l~~l~~--~~~~i~~thd~~~ 182 (356)
+||||++||+.....+ ++.+.. +.++|++||+.+.
T Consensus 174 LDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiiiisH~~~~ 213 (289)
T PRK13645 174 LDEPTGGLDPKGEEDFINLFERLNKEYKKRIIMVTHNMDQ 213 (289)
T ss_pred EeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHH
Confidence 9999999999886554 444432 4589999999754
No 200
>KOG1191 consensus Mitochondrial GTPase [Translation, ribosomal structure and biogenesis]
Probab=99.83 E-value=2.8e-21 Score=186.72 Aligned_cols=209 Identities=25% Similarity=0.308 Sum_probs=138.7
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHcCC-CCccccccccccccceEEEECCEeecccCccccccccccCccc--ccccccccc
Q 018394 19 HGRVALIGFPSVGKSTLLTLLTGTH-SEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGR--GRQVIAVSK 95 (356)
Q Consensus 19 g~~v~LvG~~gaGKSTLln~L~g~~-~~vs~~p~TT~~~~~G~i~~~g~~i~~~D~pGl~~~~~~~~~~--~~~~~~~~~ 95 (356)
|..++|+|+||+|||||+|+|+... +.|++.||||||.....+.++|.++.+.||+|+++........ ..+.-..++
T Consensus 268 gl~iaIvGrPNvGKSSLlNaL~~~drsIVSpv~GTTRDaiea~v~~~G~~v~L~DTAGiRe~~~~~iE~~gI~rA~k~~~ 347 (531)
T KOG1191|consen 268 GLQIAIVGRPNVGKSSLLNALSREDRSIVSPVPGTTRDAIEAQVTVNGVPVRLSDTAGIREESNDGIEALGIERARKRIE 347 (531)
T ss_pred CCeEEEEcCCCCCHHHHHHHHhcCCceEeCCCCCcchhhheeEeecCCeEEEEEeccccccccCChhHHHhHHHHHHHHh
Confidence 5899999999999999999999998 5799999999999999999999999999999998732211110 112222356
Q ss_pred chhHHHHHHhcCCh--HHHHHHHHHHHHHccCccccccCcccccceeccceeeeecCCCCCCCHHHHHHHHHHhcccCcE
Q 018394 96 SSDIVLMVLDASKS--EGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNAE 173 (356)
Q Consensus 96 ~~d~i~~v~d~~~~--~~~~~~i~~~L~~~~i~l~~~~~~lS~g~~qr~~ial~~DEp~~~LD~~~~~~il~~l~~~~~~ 173 (356)
.+|++++|+|+... .++. .+.+.|+..+. ..
T Consensus 348 ~advi~~vvda~~~~t~sd~-~i~~~l~~~~~----------------------------------------------g~ 380 (531)
T KOG1191|consen 348 RADVILLVVDAEESDTESDL-KIARILETEGV----------------------------------------------GL 380 (531)
T ss_pred hcCEEEEEecccccccccch-HHHHHHHHhcc----------------------------------------------ce
Confidence 78888888887321 1111 11222222111 00
Q ss_pred EEEccCCCHHHHHHHHhccccccceEEEeecCCCCCh-hhHHH-----Hh-----cCCCEEEeccccccchHHHHHHHHH
Q 018394 174 VLFREDATVDDLIDVIEGNRKYMKCVYVYNKIDVIGI-DDVDK-----LA-----RQPNSVVISCNLKLNLDRLLARMWE 242 (356)
Q Consensus 174 i~~thd~~~~~~~~~i~~~~~~~p~i~v~NK~Dl~~~-~~~~~-----l~-----~~~~~i~iSa~~~~~l~~L~~~i~~ 242 (356)
.....- ....|.++++||+|+.++ .++.. +. .++.+..+||.+++|+++|.+++.+
T Consensus 381 ~~~~~~-------------~~~~~~i~~~nk~D~~s~~~~~~~~~~~~~~~~~~~~~~i~~~vs~~tkeg~~~L~~all~ 447 (531)
T KOG1191|consen 381 VVIVNK-------------MEKQRIILVANKSDLVSKIPEMTKIPVVYPSAEGRSVFPIVVEVSCTTKEGCERLSTALLN 447 (531)
T ss_pred EEEecc-------------ccccceEEEechhhccCccccccCCceeccccccCcccceEEEeeechhhhHHHHHHHHHH
Confidence 000000 013589999999999855 22211 11 2333566999999999999999988
Q ss_pred HhCceEEEeCCCCCCCCCCccEEeecCCCCCCHHHHHH--HHHHhHhhcCcEeEE
Q 018394 243 EMGLVRVYTKPQGQQPDFTEPVVLSVDRGGCTVEDFCN--HIHRSLVKDVKYVLV 295 (356)
Q Consensus 243 ~l~~i~~~~~~~~~~p~~~~~~~~~~~r~g~~v~~~a~--~ih~~l~~~f~~a~~ 295 (356)
.+....+ +....++++.+.|+...++.++. ..|..+.+.|+--++
T Consensus 448 ~~~~~~~--------~~~s~~~t~~~~r~~~~~r~~~~~~l~~~~~~k~~~~D~~ 494 (531)
T KOG1191|consen 448 IVERLVV--------SPHSAPPTLSQKRIKELLRTCAAPELERRFLAKQLKEDID 494 (531)
T ss_pred HHHHhhc--------CCCCCchhhcchhHHHHHHhhhhhhHHHHHHhhhcccchh
Confidence 8765432 22345666766666655655544 677778887776665
No 201
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=99.83 E-value=5.5e-20 Score=186.61 Aligned_cols=162 Identities=16% Similarity=0.159 Sum_probs=115.3
Q ss_pred CCCCeEEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCccccccccccccceEEEECCEeecccCccccccccccCcccc
Q 018394 8 AGEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRG 87 (356)
Q Consensus 8 ~~~s~~v~~~~g~~v~LvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~~D~pGl~~~~~~~~~~~ 87 (356)
+++||++.+ |++++|+|+||||||||+++|+|...+ +|.+|.|.++|.++...... ......+++.
T Consensus 22 ~~isl~i~~--Ge~~~l~G~nGsGKSTLl~~l~Gl~~~---------~~~~G~i~~~g~~~~~~~~~---~~~~~~i~~v 87 (506)
T PRK13549 22 DNVSLKVRA--GEIVSLCGENGAGKSTLMKVLSGVYPH---------GTYEGEIIFEGEELQASNIR---DTERAGIAII 87 (506)
T ss_pred cceeEEEeC--CeEEEEECCCCCCHHHHHHHHhCCCCC---------CCCCeEEEECCEECCCCCHH---HHHHCCeEEE
Confidence 689999999 889999999999999999999998753 13689999999887432211 0011234454
Q ss_pred cccccccc---chhHHHHHHhcC-----ChHHHHHHHHHHHHHccC--ccccccCcccccceecccee---------eee
Q 018394 88 RQVIAVSK---SSDIVLMVLDAS-----KSEGHRQILTKELEAVGL--RLNKRPPQIYFKKKKTGGIS---------FNS 148 (356)
Q Consensus 88 ~~~~~~~~---~~d~i~~v~d~~-----~~~~~~~~i~~~L~~~~i--~l~~~~~~lS~g~~qr~~ia---------l~~ 148 (356)
.|....+. ..+.+.+..... ......+.+.++|+.+++ ..++++.+||+||+||+.|| +++
T Consensus 88 ~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqrv~la~al~~~p~lllL 167 (506)
T PRK13549 88 HQELALVKELSVLENIFLGNEITPGGIMDYDAMYLRAQKLLAQLKLDINPATPVGNLGLGQQQLVEIAKALNKQARLLIL 167 (506)
T ss_pred EeccccCCCCcHHHHhhhcccccccCCcCHHHHHHHHHHHHHHcCCCCCcccchhhCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 55433332 244443322111 112234567888999999 67889999999999999998 999
Q ss_pred cCCCCCCCHHHHHHH---HHHhc-ccCcEEEEccCCCHH
Q 018394 149 TLPLTHVDEKLCYQI---LHEYK-IHNAEVLFREDATVD 183 (356)
Q Consensus 149 DEp~~~LD~~~~~~i---l~~l~-~~~~~i~~thd~~~~ 183 (356)
||||++||+.....+ |..+. .+.++|++|||....
T Consensus 168 DEPt~~LD~~~~~~l~~~l~~l~~~~~tvi~~tH~~~~~ 206 (506)
T PRK13549 168 DEPTASLTESETAVLLDIIRDLKAHGIACIYISHKLNEV 206 (506)
T ss_pred eCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCcHHHH
Confidence 999999999885554 44443 245899999997654
No 202
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=99.82 E-value=5e-20 Score=191.04 Aligned_cols=179 Identities=14% Similarity=0.154 Sum_probs=124.3
Q ss_pred CCCCeEEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCccccccccccccceEEEECCEeec-----ccCc---c--ccc
Q 018394 8 AGEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQ-----LLDL---P--GII 77 (356)
Q Consensus 8 ~~~s~~v~~~~g~~v~LvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~-----~~D~---p--Gl~ 77 (356)
.++||++.+ |+++||+|+||||||||+++|+|...+ ..|.+.++|..+. .++. . .+.
T Consensus 33 ~~is~~v~~--Ge~~~lvG~nGsGKSTLl~~l~Gll~p-----------~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~ 99 (623)
T PRK10261 33 RNLSFSLQR--GETLAIVGESGSGKSVTALALMRLLEQ-----------AGGLVQCDKMLLRRRSRQVIELSEQSAAQMR 99 (623)
T ss_pred EeeEEEECC--CCEEEEECCCCChHHHHHHHHHcCCCC-----------CCeEEEECCEEeccccccccccccCCHHHHH
Confidence 589999999 889999999999999999999999876 7899999887541 1111 1 000
Q ss_pred cccccCcccccccc--cc---ccchhHHHHHHhc---CChHHHHHHHHHHHHHccC-----ccccccCcccccceeccce
Q 018394 78 EGASEGKGRGRQVI--AV---SKSSDIVLMVLDA---SKSEGHRQILTKELEAVGL-----RLNKRPPQIYFKKKKTGGI 144 (356)
Q Consensus 78 ~~~~~~~~~~~~~~--~~---~~~~d~i~~v~d~---~~~~~~~~~i~~~L~~~~i-----~l~~~~~~lS~g~~qr~~i 144 (356)
......++++.|.. .. +...+.+.+.+.. .......+++.++|+.+|| .+++++.+||+||+||+.|
T Consensus 100 ~~r~~~ig~v~Q~~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~~~LSgGq~QRv~i 179 (623)
T PRK10261 100 HVRGADMAMIFQEPMTSLNPVFTVGEQIAESIRLHQGASREEAMVEAKRMLDQVRIPEAQTILSRYPHQLSGGMRQRVMI 179 (623)
T ss_pred HHhCCCEEEEEeCchhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChhhHHhCCCccCCHHHHHHHHH
Confidence 00112355556643 12 2334555444322 1222334577889999998 2688999999999999999
Q ss_pred e---------eeecCCCCCCCHHH---HHHHHHHhcc--cCcEEEEccCCCHHHHHHHHhccccccceEEEeecCCCC
Q 018394 145 S---------FNSTLPLTHVDEKL---CYQILHEYKI--HNAEVLFREDATVDDLIDVIEGNRKYMKCVYVYNKIDVI 208 (356)
Q Consensus 145 a---------l~~DEp~~~LD~~~---~~~il~~l~~--~~~~i~~thd~~~~~~~~~i~~~~~~~p~i~v~NK~Dl~ 208 (356)
| +++||||++||+.. +.++++.+.. +.++|++|||.....- .+..+++++..-+.
T Consensus 180 A~AL~~~P~lLllDEPt~~LD~~~~~~l~~ll~~l~~~~g~tvi~itHdl~~~~~---------~adri~vl~~G~i~ 248 (623)
T PRK10261 180 AMALSCRPAVLIADEPTTALDVTIQAQILQLIKVLQKEMSMGVIFITHDMGVVAE---------IADRVLVMYQGEAV 248 (623)
T ss_pred HHHHhCCCCEEEEeCCCCccCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHH---------hCCEEEEeeCCeec
Confidence 8 99999999999998 4555656542 4599999999764321 23667777655443
No 203
>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]
Probab=99.82 E-value=4.7e-20 Score=182.00 Aligned_cols=165 Identities=16% Similarity=0.182 Sum_probs=130.0
Q ss_pred CCCCeEEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCccccccccccccceEEEECCEeecccCccccccccccCcccc
Q 018394 8 AGEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRG 87 (356)
Q Consensus 8 ~~~s~~v~~~~g~~v~LvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~~D~pGl~~~~~~~~~~~ 87 (356)
++++|++.+ |+++||+|.||||||||++.|+|...| +.|+|.++|.++.+.++. .....|+...
T Consensus 25 ~~v~l~v~~--GEV~aL~GeNGAGKSTLmKiLsGv~~p-----------~~G~I~~~G~~~~~~sp~---~A~~~GI~~V 88 (500)
T COG1129 25 DGVSLTVRP--GEVHALLGENGAGKSTLMKILSGVYPP-----------DSGEILIDGKPVAFSSPR---DALAAGIATV 88 (500)
T ss_pred ccceeEEeC--ceEEEEecCCCCCHHHHHHHHhCcccC-----------CCceEEECCEEccCCCHH---HHHhCCcEEE
Confidence 689999999 889999999999999999999999987 899999999999875433 2335678888
Q ss_pred ccccccccchhHHHHHHhcC---------ChHHHHHHHHHHHHHccC--ccccccCcccccceecccee---------ee
Q 018394 88 RQVIAVSKSSDIVLMVLDAS---------KSEGHRQILTKELEAVGL--RLNKRPPQIYFKKKKTGGIS---------FN 147 (356)
Q Consensus 88 ~~~~~~~~~~d~i~~v~d~~---------~~~~~~~~i~~~L~~~~i--~l~~~~~~lS~g~~qr~~ia---------l~ 147 (356)
+|.+..+++.++...+.-.. +.........++|..+++ ..+.+..+||++++|.+.|| ++
T Consensus 89 ~QEl~L~p~LsVaeNifLgre~~~~~g~id~~~m~~~A~~~l~~lg~~~~~~~~v~~LsiaqrQ~VeIArAl~~~arllI 168 (500)
T COG1129 89 HQELSLVPNLSVAENIFLGREPTRRFGLIDRKAMRRRARELLARLGLDIDPDTLVGDLSIAQRQMVEIARALSFDARVLI 168 (500)
T ss_pred eechhccCCccHHHHhhcccccccCCCccCHHHHHHHHHHHHHHcCCCCChhhhhhhCCHHHHHHHHHHHHHhcCCCEEE
Confidence 99998888866655443221 123445667888888887 47888899999999999998 99
Q ss_pred ecCCCCCCCHHHHHHH---HHHhcc-cCcEEEEccCCCH-HHHHHH
Q 018394 148 STLPLTHVDEKLCYQI---LHEYKI-HNAEVLFREDATV-DDLIDV 188 (356)
Q Consensus 148 ~DEp~~~LD~~~~~~i---l~~l~~-~~~~i~~thd~~~-~~~~~~ 188 (356)
+||||++|+...+..+ ++.++. +.++|++||.++. .+++|.
T Consensus 169 lDEPTaaLt~~E~~~Lf~~ir~Lk~~Gv~ii~ISHrl~Ei~~i~Dr 214 (500)
T COG1129 169 LDEPTAALTVKETERLFDLIRRLKAQGVAIIYISHRLDEVFEIADR 214 (500)
T ss_pred EcCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEcCcHHHHHHhcCE
Confidence 9999999999886554 555554 4599999997643 344443
No 204
>PRK14268 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.82 E-value=8.4e-20 Score=169.65 Aligned_cols=181 Identities=15% Similarity=0.118 Sum_probs=119.4
Q ss_pred CCCCeEEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCccccccccccccceEEEECCEeecccCccccccccccCcccc
Q 018394 8 AGEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRG 87 (356)
Q Consensus 8 ~~~s~~v~~~~g~~v~LvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~~D~pGl~~~~~~~~~~~ 87 (356)
.++||++.+ |++++|+|+||||||||+++|+|...+..+ .|..|+|.++|.++...+.+ .. .....+++.
T Consensus 29 ~~vs~~i~~--Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~------~~~~G~i~~~g~~i~~~~~~-~~-~~~~~i~~v 98 (258)
T PRK14268 29 KNVSMQIPK--NSVTALIGPSGCGKSTFIRCLNRMNDLIKN------CRIEGKVSIEGEDIYEPDVD-VV-ELRKNVGMV 98 (258)
T ss_pred eeeEEEEcC--CCEEEEECCCCCCHHHHHHHHhcCCCcccC------CCcceEEEECCEEcccccch-HH-HHhhhEEEE
Confidence 689999999 889999999999999999999998753000 02589999999876422110 00 011223343
Q ss_pred ccccccc--cchhHHHHHHhcC--ChHHHHHHHHHHHHHccC------ccccccCcccccceecccee---------eee
Q 018394 88 RQVIAVS--KSSDIVLMVLDAS--KSEGHRQILTKELEAVGL------RLNKRPPQIYFKKKKTGGIS---------FNS 148 (356)
Q Consensus 88 ~~~~~~~--~~~d~i~~v~d~~--~~~~~~~~i~~~L~~~~i------~l~~~~~~lS~g~~qr~~ia---------l~~ 148 (356)
.|....+ ...+.+.+..... ......+.+.++++.+++ .+++++..||+||+||++++ +++
T Consensus 99 ~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgG~~qrv~laral~~~p~llll 178 (258)
T PRK14268 99 FQKPNPFPMSIYDNVAYGPRIHGANKKDLDGVVENALRSAALWDETSDRLKSPALSLSGGQQQRLCIARTLAVKPKIILF 178 (258)
T ss_pred ecCCccCcccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCCcchhhhhcCChhhCCHHHHHHHHHHHHHHcCCCEEEE
Confidence 3332222 2344444432211 112223456778888876 25778899999999999998 999
Q ss_pred cCCCCCCCHHHHHH---HHHHhcccCcEEEEccCCCHHHHHHHHhccccccceEEEeecCCC
Q 018394 149 TLPLTHVDEKLCYQ---ILHEYKIHNAEVLFREDATVDDLIDVIEGNRKYMKCVYVYNKIDV 207 (356)
Q Consensus 149 DEp~~~LD~~~~~~---il~~l~~~~~~i~~thd~~~~~~~~~i~~~~~~~p~i~v~NK~Dl 207 (356)
||||++||+..... +++++..+.++|++||+...... .+..+++++..-+
T Consensus 179 DEPt~~LD~~~~~~l~~~l~~l~~~~tiiivsH~~~~~~~---------~~d~i~~l~~G~i 231 (258)
T PRK14268 179 DEPTSALDPISTARIEDLIMNLKKDYTIVIVTHNMQQAAR---------ISDYTGFFLMGEL 231 (258)
T ss_pred eCCCcccCHHHHHHHHHHHHHHhhCCEEEEEECCHHHHHH---------hCCEEEEEECCEE
Confidence 99999999988544 45455445689999999754321 2366777776544
No 205
>cd01898 Obg Obg subfamily. The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain.
Probab=99.82 E-value=1.6e-20 Score=162.26 Aligned_cols=161 Identities=31% Similarity=0.478 Sum_probs=109.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCccccccccccccceEEEECCE-eecccCccccccccccCccccccccccccchhH
Q 018394 21 RVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDT-KIQLLDLPGIIEGASEGKGRGRQVIAVSKSSDI 99 (356)
Q Consensus 21 ~v~LvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~-~i~~~D~pGl~~~~~~~~~~~~~~~~~~~~~d~ 99 (356)
.|+|+|++|||||||+|+|++....++++||+|+++..|.+.+++. .+.++||||+.........+...+...++.+|+
T Consensus 2 ~v~ivG~~~~GKStl~~~l~~~~~~v~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~d~ 81 (170)
T cd01898 2 DVGLVGLPNAGKSTLLSAISNAKPKIADYPFTTLVPNLGVVRVDDGRSFVVADIPGLIEGASEGKGLGHRFLRHIERTRL 81 (170)
T ss_pred CeEEECCCCCCHHHHHHHHhcCCccccCCCccccCCcceEEEcCCCCeEEEEecCcccCcccccCCchHHHHHHHHhCCE
Confidence 5899999999999999999998877899999999999999999887 899999999854322222222333334456777
Q ss_pred HHHHHhcCChHHHHHHHHHHHHHccCccccccCcccccceeccceeeeecCCCCCCCHHHHHHHHHHhcccCcEEEEccC
Q 018394 100 VLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNAEVLFRED 179 (356)
Q Consensus 100 i~~v~d~~~~~~~~~~i~~~L~~~~i~l~~~~~~lS~g~~qr~~ial~~DEp~~~LD~~~~~~il~~l~~~~~~i~~thd 179 (356)
+++++|++......+.+.. +++.+..
T Consensus 82 vi~v~D~~~~~~~~~~~~~--------------------------------------------~~~~l~~---------- 107 (170)
T cd01898 82 LLHVIDLSGDDDPVEDYKT--------------------------------------------IRNELEL---------- 107 (170)
T ss_pred EEEEEecCCCCCHHHHHHH--------------------------------------------HHHHHHH----------
Confidence 8888887654111111111 1111100
Q ss_pred CCHHHHHHHHhccccccceEEEeecCCCCChhhH----HHHh-c--CCCEEEeccccccchHHHHHHHHHHh
Q 018394 180 ATVDDLIDVIEGNRKYMKCVYVYNKIDVIGIDDV----DKLA-R--QPNSVVISCNLKLNLDRLLARMWEEM 244 (356)
Q Consensus 180 ~~~~~~~~~i~~~~~~~p~i~v~NK~Dl~~~~~~----~~l~-~--~~~~i~iSa~~~~~l~~L~~~i~~~l 244 (356)
.......+|.++|+||+|+...... ..+. . ..+++++||+++.|++++.+.+.+.|
T Consensus 108 ---------~~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~i~~~~ 170 (170)
T cd01898 108 ---------YNPELLEKPRIVVLNKIDLLDEEELFELLKELLKELWGKPVFPISALTGEGLDELLRKLAELL 170 (170)
T ss_pred ---------hCccccccccEEEEEchhcCCchhhHHHHHHHHhhCCCCCEEEEecCCCCCHHHHHHHHHhhC
Confidence 0000124699999999998754332 2222 2 34589999999999999998887643
No 206
>PRK14259 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.82 E-value=8.6e-20 Score=170.64 Aligned_cols=176 Identities=15% Similarity=0.108 Sum_probs=116.5
Q ss_pred CCCCeEEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCccccccccccccceEEEECCEeeccc--CccccccccccCcc
Q 018394 8 AGEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLL--DLPGIIEGASEGKG 85 (356)
Q Consensus 8 ~~~s~~v~~~~g~~v~LvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~~--D~pGl~~~~~~~~~ 85 (356)
+++||+|.+ |++++|+|+|||||||||++|+|...+.. .-|..|.+.++|.++... +... ....++
T Consensus 30 ~~is~~i~~--Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~------~~p~~G~v~~~g~~i~~~~~~~~~----~~~~i~ 97 (269)
T PRK14259 30 KNVFCDIPR--GKVTALIGPSGCGKSTVLRSLNRMNDLIE------GCSLKGRVLFDGTDLYDPRVDPVE----VRRRIG 97 (269)
T ss_pred cceEEEEcC--CCEEEEECCCCCCHHHHHHHHhccccccC------CCCCceEEEECCEEcccccCCHHH----HhhceE
Confidence 689999999 88999999999999999999999864200 003689999999876421 1111 112234
Q ss_pred cccccccccc--chhHHHHHHhcCC-hHHHHHHHHHHHHHccC------ccccccCcccccceecccee---------ee
Q 018394 86 RGRQVIAVSK--SSDIVLMVLDASK-SEGHRQILTKELEAVGL------RLNKRPPQIYFKKKKTGGIS---------FN 147 (356)
Q Consensus 86 ~~~~~~~~~~--~~d~i~~v~d~~~-~~~~~~~i~~~L~~~~i------~l~~~~~~lS~g~~qr~~ia---------l~ 147 (356)
+..|....+. ..+.+.+...... .....+.+.+.++.+++ .+++++..||+||+||++++ ++
T Consensus 98 ~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~lll 177 (269)
T PRK14259 98 MVFQQPNPFPKSIYENIAFGARINGYTGDMDELVERSLRKAAVWDECKDKLNESGYSLSGGQQQRLCIARTIAIEPEVIL 177 (269)
T ss_pred EEccCCccchhhHHHHHhhhhhhcCCcHHHHHHHHHHHHHhCCcchhhhhhCCCcccCCHHHHHHHHHHHHHhcCCCEEE
Confidence 4444332222 2333333221111 11223445667777765 36778899999999999988 99
Q ss_pred ecCCCCCCCHHHHHH---HHHHhcccCcEEEEccCCCHHHHHHHHhccccccceEEEeec
Q 018394 148 STLPLTHVDEKLCYQ---ILHEYKIHNAEVLFREDATVDDLIDVIEGNRKYMKCVYVYNK 204 (356)
Q Consensus 148 ~DEp~~~LD~~~~~~---il~~l~~~~~~i~~thd~~~~~~~~~i~~~~~~~p~i~v~NK 204 (356)
+||||++||+..... +|+++..+.++|++||+...... .+..+++++.
T Consensus 178 LDEPt~gLD~~~~~~l~~~l~~~~~~~tiiivtH~~~~~~~---------~~d~i~~l~~ 228 (269)
T PRK14259 178 MDEPCSALDPISTLKIEETMHELKKNFTIVIVTHNMQQAVR---------VSDMTAFFNA 228 (269)
T ss_pred EcCCCccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHH---------hcCEEEEEec
Confidence 999999999987544 45555444689999999754321 2366777774
No 207
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=99.82 E-value=3e-20 Score=163.48 Aligned_cols=130 Identities=18% Similarity=0.217 Sum_probs=98.5
Q ss_pred CCCCeEEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCccccccccccccceEEEECCEeecccCccccccccccCcccc
Q 018394 8 AGEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRG 87 (356)
Q Consensus 8 ~~~s~~v~~~~g~~v~LvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~~D~pGl~~~~~~~~~~~ 87 (356)
.+++|++.+ |++++|+|+||||||||+++|+|...+ ..|.+.++|.++.-.+...+.
T Consensus 16 ~~~~~~i~~--G~~~~l~G~nGsGKStLl~~i~G~~~~-----------~~G~v~~~g~~~~~~~~~~~~---------- 72 (180)
T cd03214 16 DDLSLSIEA--GEIVGILGPNGAGKSTLLKTLAGLLKP-----------SSGEILLDGKDLASLSPKELA---------- 72 (180)
T ss_pred eeeEEEECC--CCEEEEECCCCCCHHHHHHHHhCCCCC-----------CCcEEEECCEECCcCCHHHHH----------
Confidence 578999999 889999999999999999999999866 899999999876433211100
Q ss_pred ccccccccchhHHHHHHhcCChHHHHHHHHHHHHHccC--ccccccCcccccceecccee---------eeecCCCCCCC
Q 018394 88 RQVIAVSKSSDIVLMVLDASKSEGHRQILTKELEAVGL--RLNKRPPQIYFKKKKTGGIS---------FNSTLPLTHVD 156 (356)
Q Consensus 88 ~~~~~~~~~~d~i~~v~d~~~~~~~~~~i~~~L~~~~i--~l~~~~~~lS~g~~qr~~ia---------l~~DEp~~~LD 156 (356)
..+-++.. .++.+++ .+++.+..||+|++||++++ +++||||++||
T Consensus 73 ----------~~i~~~~q-------------~l~~~gl~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEP~~~LD 129 (180)
T cd03214 73 ----------RKIAYVPQ-------------ALELLGLAHLADRPFNELSGGERQRVLLARALAQEPPILLLDEPTSHLD 129 (180)
T ss_pred ----------HHHhHHHH-------------HHHHcCCHhHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCC
Confidence 00111110 5566666 46778899999999999988 99999999999
Q ss_pred HHHHHH---HHHHhcc--cCcEEEEccCCCHH
Q 018394 157 EKLCYQ---ILHEYKI--HNAEVLFREDATVD 183 (356)
Q Consensus 157 ~~~~~~---il~~l~~--~~~~i~~thd~~~~ 183 (356)
...... ++..+.. +.+++++||+.+..
T Consensus 130 ~~~~~~~~~~l~~~~~~~~~tiii~sh~~~~~ 161 (180)
T cd03214 130 IAHQIELLELLRRLARERGKTVVMVLHDLNLA 161 (180)
T ss_pred HHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHH
Confidence 987544 4555543 45899999997653
No 208
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=99.82 E-value=6.2e-20 Score=187.18 Aligned_cols=168 Identities=16% Similarity=0.157 Sum_probs=115.3
Q ss_pred CCCCeEEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCccccccccccccceEEEECCEeecccCccccccccccCcccc
Q 018394 8 AGEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRG 87 (356)
Q Consensus 8 ~~~s~~v~~~~g~~v~LvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~~D~pGl~~~~~~~~~~~ 87 (356)
.++||++.+ |+++||+|+||||||||+++|+|...+.. ..|.+|.+.++|.++...+...+.......+++.
T Consensus 26 ~~isl~i~~--Ge~~~iiG~nGsGKSTLl~~i~G~~~~~~------~~~~~G~i~~~g~~i~~~~~~~~~~~~~~~ig~v 97 (529)
T PRK15134 26 NDVSLQIEA--GETLALVGESGSGKSVTALSILRLLPSPP------VVYPSGDIRFHGESLLHASEQTLRGVRGNKIAMI 97 (529)
T ss_pred eceEEEEeC--CCEEEEECCCCCcHHHHHHHHhcCCCCCc------CCccceEEEECCEecccCCHHHHHHHhcCceEEE
Confidence 689999999 88999999999999999999999975400 0125899999999875433221111111234555
Q ss_pred ccccc--cc---cchhHHHHHHhc---CChHHHHHHHHHHHHHccC-c----cccccCcccccceecccee---------
Q 018394 88 RQVIA--VS---KSSDIVLMVLDA---SKSEGHRQILTKELEAVGL-R----LNKRPPQIYFKKKKTGGIS--------- 145 (356)
Q Consensus 88 ~~~~~--~~---~~~d~i~~v~d~---~~~~~~~~~i~~~L~~~~i-~----l~~~~~~lS~g~~qr~~ia--------- 145 (356)
.|... .. ...+.+.+.... .......+.+.+.|+.+++ . +++++.+||+||+||++||
T Consensus 98 ~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~LSgGe~qrv~iAraL~~~p~l 177 (529)
T PRK15134 98 FQEPMVSLNPLHTLEKQLYEVLSLHRGMRREAARGEILNCLDRVGIRQAAKRLTDYPHQLSGGERQRVMIAMALLTRPEL 177 (529)
T ss_pred ecCchhhcCchhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChHHHHhhCCcccCHHHHHHHHHHHHHhcCCCE
Confidence 55421 11 112223222211 1222334668889999998 2 4788999999999999998
Q ss_pred eeecCCCCCCCHHHHHHHH---HHhcc--cCcEEEEccCCCHH
Q 018394 146 FNSTLPLTHVDEKLCYQIL---HEYKI--HNAEVLFREDATVD 183 (356)
Q Consensus 146 l~~DEp~~~LD~~~~~~il---~~l~~--~~~~i~~thd~~~~ 183 (356)
+++||||++||+.....++ +.+.. +.++|++|||....
T Consensus 178 lllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~~~ 220 (529)
T PRK15134 178 LIADEPTTALDVSVQAQILQLLRELQQELNMGLLFITHNLSIV 220 (529)
T ss_pred EEEcCCCCccCHHHHHHHHHHHHHHHHhcCCeEEEEcCcHHHH
Confidence 9999999999999865554 44432 45899999997654
No 209
>PRK14241 phosphate transporter ATP-binding protein; Provisional
Probab=99.82 E-value=8.5e-20 Score=169.59 Aligned_cols=178 Identities=16% Similarity=0.134 Sum_probs=117.7
Q ss_pred CCCCeEEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCccccccccccccceEEEECCEeecccCccccccccccCcccc
Q 018394 8 AGEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRG 87 (356)
Q Consensus 8 ~~~s~~v~~~~g~~v~LvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~~D~pGl~~~~~~~~~~~ 87 (356)
.+++|++.+ |++++|+|+|||||||||++|+|...+. |+ .|..|.|.++|.++...+.. . ......+++.
T Consensus 21 ~~isl~i~~--Ge~~~i~G~nGsGKSTLl~~laGl~~~~---~~---~~~~G~I~~~g~~~~~~~~~-~-~~~~~~i~~~ 90 (258)
T PRK14241 21 EDVNLNIEP--RSVTAFIGPSGCGKSTVLRTLNRMHEVI---PG---ARVEGEVLLDGEDLYGPGVD-P-VAVRRTIGMV 90 (258)
T ss_pred eeeeEEEcC--CcEEEEECCCCCCHHHHHHHHhccCCcc---cC---CCcceEEEECCEeccccccC-h-HHHhcceEEE
Confidence 588999999 8899999999999999999999987530 00 03689999999876421100 0 0111233444
Q ss_pred cccccccc---chhHHHHHHhcC---ChHHHHHHHHHHHHHccC------ccccccCcccccceecccee---------e
Q 018394 88 RQVIAVSK---SSDIVLMVLDAS---KSEGHRQILTKELEAVGL------RLNKRPPQIYFKKKKTGGIS---------F 146 (356)
Q Consensus 88 ~~~~~~~~---~~d~i~~v~d~~---~~~~~~~~i~~~L~~~~i------~l~~~~~~lS~g~~qr~~ia---------l 146 (356)
.|....+. ..+.+.+..... ......+.+.+.|+.+++ .+++.+.+||+||+||++++ +
T Consensus 91 ~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~ll 170 (258)
T PRK14241 91 FQRPNPFPTMSIRDNVVAGLKLNGVRNKKDLDELVEKSLRGANLWNEVKDRLDKPGGGLSGGQQQRLCIARAIAVEPDVL 170 (258)
T ss_pred ccccccCCCCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhhHhhCCcccCCHHHHHHHHHHHHHhcCCCEE
Confidence 44332222 244443332211 112223456777888876 35678899999999999998 9
Q ss_pred eecCCCCCCCHHHHH---HHHHHhcccCcEEEEccCCCHHHHHHHHhccccccceEEEeec
Q 018394 147 NSTLPLTHVDEKLCY---QILHEYKIHNAEVLFREDATVDDLIDVIEGNRKYMKCVYVYNK 204 (356)
Q Consensus 147 ~~DEp~~~LD~~~~~---~il~~l~~~~~~i~~thd~~~~~~~~~i~~~~~~~p~i~v~NK 204 (356)
++||||++||+.... +++.++....++|++||+.....- .+..++++++
T Consensus 171 llDEPt~~LD~~~~~~l~~~l~~~~~~~tviivsH~~~~~~~---------~~d~i~~l~~ 222 (258)
T PRK14241 171 LMDEPCSALDPISTLAIEDLINELKQDYTIVIVTHNMQQAAR---------VSDQTAFFNL 222 (258)
T ss_pred EEcCCCccCCHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHH---------hCCEEEEEec
Confidence 999999999998754 455555444689999999754321 2356677763
No 210
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=99.82 E-value=6.3e-20 Score=185.97 Aligned_cols=160 Identities=14% Similarity=0.147 Sum_probs=115.0
Q ss_pred CCCCeEEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCccccccccccccceEEEECCEeecccCccccccccccCcccc
Q 018394 8 AGEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRG 87 (356)
Q Consensus 8 ~~~s~~v~~~~g~~v~LvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~~D~pGl~~~~~~~~~~~ 87 (356)
.++||++.+ |++++|+|+||||||||+++|+|...| ..|.|.++|.++...+... .....+++.
T Consensus 21 ~~isl~i~~--Ge~~~l~G~nGsGKSTLl~~l~Gl~~p-----------~~G~I~~~g~~i~~~~~~~---~~~~~i~~v 84 (501)
T PRK11288 21 DDISFDCRA--GQVHALMGENGAGKSTLLKILSGNYQP-----------DAGSILIDGQEMRFASTTA---ALAAGVAII 84 (501)
T ss_pred eeeeEEEeC--CcEEEEECCCCCCHHHHHHHHhCCCCC-----------CCCEEEECCEECCCCCHHH---HHhCCEEEE
Confidence 589999999 889999999999999999999999866 7899999998874322111 112234444
Q ss_pred ccccccccc---hhHHHHHHh-c----CChHHHHHHHHHHHHHccC--ccccccCcccccceecccee---------eee
Q 018394 88 RQVIAVSKS---SDIVLMVLD-A----SKSEGHRQILTKELEAVGL--RLNKRPPQIYFKKKKTGGIS---------FNS 148 (356)
Q Consensus 88 ~~~~~~~~~---~d~i~~v~d-~----~~~~~~~~~i~~~L~~~~i--~l~~~~~~lS~g~~qr~~ia---------l~~ 148 (356)
.|....+.. .+.+.+... . .......+.+.+.|+.+++ ..++++.+||+||+||+.|| +++
T Consensus 85 ~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~laral~~~p~lllL 164 (501)
T PRK11288 85 YQELHLVPEMTVAENLYLGQLPHKGGIVNRRLLNYEAREQLEHLGVDIDPDTPLKYLSIGQRQMVEIAKALARNARVIAF 164 (501)
T ss_pred EechhccCCCCHHHHHHhcccccccCCCCHHHHHHHHHHHHHHcCCCCCcCCchhhCCHHHHHHHHHHHHHHhCCCEEEE
Confidence 554333332 344433211 0 1122234567888999998 56888999999999999998 999
Q ss_pred cCCCCCCCHHHHHHHH---HHhcc-cCcEEEEccCCCHH
Q 018394 149 TLPLTHVDEKLCYQIL---HEYKI-HNAEVLFREDATVD 183 (356)
Q Consensus 149 DEp~~~LD~~~~~~il---~~l~~-~~~~i~~thd~~~~ 183 (356)
||||++||+.....++ ..+.. +.++|++|||....
T Consensus 165 DEPt~~LD~~~~~~l~~~l~~~~~~g~tiiiitHd~~~~ 203 (501)
T PRK11288 165 DEPTSSLSAREIEQLFRVIRELRAEGRVILYVSHRMEEI 203 (501)
T ss_pred cCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHH
Confidence 9999999999865554 44432 45899999997643
No 211
>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.82 E-value=1.1e-19 Score=166.30 Aligned_cols=156 Identities=21% Similarity=0.216 Sum_probs=113.6
Q ss_pred CCCCeEEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCccccccccccccceEEEECCEeecccCccccccccccCcccc
Q 018394 8 AGEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRG 87 (356)
Q Consensus 8 ~~~s~~v~~~~g~~v~LvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~~D~pGl~~~~~~~~~~~ 87 (356)
++++|++.+ |++++|+|+||||||||+++|+|...+ ..|.+.++|.++.-.+.. ...+++.
T Consensus 17 ~~i~~~i~~--Ge~~~i~G~nGsGKSTLl~~l~g~~~~-----------~~G~i~~~g~~~~~~~~~------~~~i~~~ 77 (232)
T cd03300 17 DGVSLDIKE--GEFFTLLGPSGCGKTTLLRLIAGFETP-----------TSGEILLDGKDITNLPPH------KRPVNTV 77 (232)
T ss_pred ccceEEECC--CCEEEEECCCCCCHHHHHHHHhcCCCC-----------CceEEEECCEEcCcCChh------hcceEEE
Confidence 588999999 889999999999999999999999876 789999999876532210 1223333
Q ss_pred cccccccc---chhHHHHHHhcC--ChHHHHHHHHHHHHHccC--ccccccCcccccceecccee---------eeecCC
Q 018394 88 RQVIAVSK---SSDIVLMVLDAS--KSEGHRQILTKELEAVGL--RLNKRPPQIYFKKKKTGGIS---------FNSTLP 151 (356)
Q Consensus 88 ~~~~~~~~---~~d~i~~v~d~~--~~~~~~~~i~~~L~~~~i--~l~~~~~~lS~g~~qr~~ia---------l~~DEp 151 (356)
.+....+. ..+.+.+..... ........+...++.+++ .+++.+..||+|++||+.++ +++|||
T Consensus 78 ~q~~~~~~~~t~~~nl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qrl~laral~~~p~llllDEP 157 (232)
T cd03300 78 FQNYALFPHLTVFENIAFGLRLKKLPKAEIKERVAEALDLVQLEGYANRKPSQLSGGQQQRVAIARALVNEPKVLLLDEP 157 (232)
T ss_pred ecccccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCC
Confidence 44333332 234443332211 122234456778888999 67889999999999999988 999999
Q ss_pred CCCCCHHHHHH---HHHHhcc--cCcEEEEccCCCH
Q 018394 152 LTHVDEKLCYQ---ILHEYKI--HNAEVLFREDATV 182 (356)
Q Consensus 152 ~~~LD~~~~~~---il~~l~~--~~~~i~~thd~~~ 182 (356)
|++||+..... +++++.. +.++++++|+...
T Consensus 158 ~~gLD~~~~~~l~~~l~~~~~~~~~tiii~sh~~~~ 193 (232)
T cd03300 158 LGALDLKLRKDMQLELKRLQKELGITFVFVTHDQEE 193 (232)
T ss_pred cccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHH
Confidence 99999988554 4555543 4699999999754
No 212
>COG4674 Uncharacterized ABC-type transport system, ATPase component [General function prediction only]
Probab=99.82 E-value=4.3e-20 Score=159.79 Aligned_cols=193 Identities=20% Similarity=0.253 Sum_probs=151.0
Q ss_pred CCCCeEEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCccccccccccccceEEEECC-EeecccCccccccccccCccc
Q 018394 8 AGEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYND-TKIQLLDLPGIIEGASEGKGR 86 (356)
Q Consensus 8 ~~~s~~v~~~~g~~v~LvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g-~~i~~~D~pGl~~~~~~~~~~ 86 (356)
+++||++.. |+.-+||||||||||||+-.|+|...| ..|.+.++| .++.-++...+ +..|+++
T Consensus 22 n~ls~~v~~--Gelr~lIGpNGAGKTT~mD~ItGKtrp-----------~~G~v~f~g~~dl~~~~e~~I---Ar~GIGR 85 (249)
T COG4674 22 NDLSFSVDP--GELRVLIGPNGAGKTTLMDVITGKTRP-----------QEGEVLFDGDTDLTKLPEHRI---ARAGIGR 85 (249)
T ss_pred eeeEEEecC--CeEEEEECCCCCCceeeeeeecccCCC-----------CcceEEEcCchhhccCCHHHH---HHhccCc
Confidence 578999999 889999999999999999999999877 789999998 67765554433 5568888
Q ss_pred cccccccccch---hHHHHHHh----------cCChHHHHHHHHHHHHHccC--ccccccCcccccceecccee------
Q 018394 87 GRQVIAVSKSS---DIVLMVLD----------ASKSEGHRQILTKELEAVGL--RLNKRPPQIYFKKKKTGGIS------ 145 (356)
Q Consensus 87 ~~~~~~~~~~~---d~i~~v~d----------~~~~~~~~~~i~~~L~~~~i--~l~~~~~~lS~g~~qr~~ia------ 145 (356)
-+|.+..+.+. +++.+... .....++..++++.|+..++ ..++....||-||+|++.|.
T Consensus 86 KFQ~PtVfe~ltV~eNLelA~~~~k~v~a~L~~r~~~~e~~ride~La~igL~~~~~~~A~~LSHGqKQwLEIGMll~Q~ 165 (249)
T COG4674 86 KFQKPTVFENLTVRENLELALNRDKSVFASLFARLRAEERRRIDELLATIGLGDERDRLAALLSHGQKQWLEIGMLLAQD 165 (249)
T ss_pred cccCCeehhhccHHHHHHHHhcCCcchHHHhhhhcChhHHHHHHHHHHHcccchhhhhhhhhhccchhhhhhhheeeccC
Confidence 88888777653 33333221 11233456789999999999 77888999999999999887
Q ss_pred ---eeecCCCCCCCHHH---HHHHHHHhcccCcEEEEccCCCHHHHHHHHhccccccceEEEeecCCCCChhhHHHHhcC
Q 018394 146 ---FNSTLPLTHVDEKL---CYQILHEYKIHNAEVLFREDATVDDLIDVIEGNRKYMKCVYVYNKIDVIGIDDVDKLARQ 219 (356)
Q Consensus 146 ---l~~DEp~~~LD~~~---~~~il~~l~~~~~~i~~thd~~~~~~~~~i~~~~~~~p~i~v~NK~Dl~~~~~~~~l~~~ 219 (356)
+++|||++++..+. ..++++.+....+++++.||+.+...+. ..+-|++..-...+..++.+...
T Consensus 166 P~lLLlDEPvAGMTd~Et~~taeLl~~la~~hsilVVEHDM~Fvr~~A---------~~VTVlh~G~VL~EGsld~v~~d 236 (249)
T COG4674 166 PKLLLLDEPVAGMTDAETEKTAELLKSLAGKHSILVVEHDMGFVREIA---------DKVTVLHEGSVLAEGSLDEVQND 236 (249)
T ss_pred CcEEEecCccCCCcHHHHHHHHHHHHHHhcCceEEEEeccHHHHHHhh---------heeEEEeccceeecccHHHhhcC
Confidence 88899999998776 4567777777789999999997655432 45778888888777888888777
Q ss_pred CCEEEe
Q 018394 220 PNSVVI 225 (356)
Q Consensus 220 ~~~i~i 225 (356)
+.++.+
T Consensus 237 p~ViEv 242 (249)
T COG4674 237 PKVIEV 242 (249)
T ss_pred cceEee
Confidence 766543
No 213
>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.82 E-value=4.1e-20 Score=168.54 Aligned_cols=171 Identities=13% Similarity=0.114 Sum_probs=109.9
Q ss_pred CCCCeEEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCccccccccccccceEEEECCEeecccCccccccccccCcccc
Q 018394 8 AGEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRG 87 (356)
Q Consensus 8 ~~~s~~v~~~~g~~v~LvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~~D~pGl~~~~~~~~~~~ 87 (356)
.+++|++.+ |++++|+|+|||||||||++|+|...+ ..|.+.++|.++.-.+...+ ....++.
T Consensus 20 ~~isl~i~~--G~~~~i~G~nGsGKSTLl~~l~G~~~~-----------~~G~i~~~g~~~~~~~~~~~----~~~i~~~ 82 (229)
T cd03254 20 KDINFSIKP--GETVAIVGPTGAGKTTLINLLMRFYDP-----------QKGQILIDGIDIRDISRKSL----RSMIGVV 82 (229)
T ss_pred cceEEEEcC--CCEEEEECCCCCCHHHHHHHHhcCcCC-----------CCCEEEECCEeHHHcCHHHH----hhhEEEe
Confidence 688999999 889999999999999999999999876 78999999987653322111 1123333
Q ss_pred ccccccccchhHHHHHHhcCChHHHHHHHHHHHHHc-----------cC--ccccccCcccccceecccee---------
Q 018394 88 RQVIAVSKSSDIVLMVLDASKSEGHRQILTKELEAV-----------GL--RLNKRPPQIYFKKKKTGGIS--------- 145 (356)
Q Consensus 88 ~~~~~~~~~~d~i~~v~d~~~~~~~~~~i~~~L~~~-----------~i--~l~~~~~~lS~g~~qr~~ia--------- 145 (356)
.|....+.. .+...+...... .....+.+.++.+ ++ .+++.+..||+||+||+.++
T Consensus 83 ~q~~~~~~~-tv~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G~~~rv~la~al~~~p~l 160 (229)
T cd03254 83 LQDTFLFSG-TIMENIRLGRPN-ATDEEVIEAAKEAGAHDFIMKLPNGYDTVLGENGGNLSQGERQLLAIARAMLRDPKI 160 (229)
T ss_pred cCCchhhhh-HHHHHHhccCCC-CCHHHHHHHHHHhChHHHHHhCcccccCHhhcCCCcCCHHHHHHHHHHHHHhcCCCE
Confidence 333222221 222111111110 0111222233332 22 34556789999999999988
Q ss_pred eeecCCCCCCCHHHHHH---HHHHhcccCcEEEEccCCCHHHHHHHHhccccccceEEEeecCCC
Q 018394 146 FNSTLPLTHVDEKLCYQ---ILHEYKIHNAEVLFREDATVDDLIDVIEGNRKYMKCVYVYNKIDV 207 (356)
Q Consensus 146 l~~DEp~~~LD~~~~~~---il~~l~~~~~~i~~thd~~~~~~~~~i~~~~~~~p~i~v~NK~Dl 207 (356)
+++||||++||+..... ++..+..+.+++++||+...... +..+++++...+
T Consensus 161 lllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~----------~d~i~~l~~g~~ 215 (229)
T cd03254 161 LILDEATSNIDTETEKLIQEALEKLMKGRTSIIIAHRLSTIKN----------ADKILVLDDGKI 215 (229)
T ss_pred EEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHhh----------CCEEEEEeCCeE
Confidence 99999999999987554 44444444689999999754322 255666665443
No 214
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=99.82 E-value=6.2e-20 Score=185.61 Aligned_cols=160 Identities=16% Similarity=0.148 Sum_probs=114.0
Q ss_pred CCCCeEEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCccccccccccccceEEEECCEeecccCccccccccccCcccc
Q 018394 8 AGEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRG 87 (356)
Q Consensus 8 ~~~s~~v~~~~g~~v~LvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~~D~pGl~~~~~~~~~~~ 87 (356)
.++||++.+ |++++|+|+||||||||+++|+|...| ..|.+.++|.++....... .....+++.
T Consensus 15 ~~vs~~i~~--Ge~~~liG~nGsGKSTLl~~l~Gl~~p-----------~~G~i~~~g~~~~~~~~~~---~~~~~i~~v 78 (491)
T PRK10982 15 DNVNLKVRP--HSIHALMGENGAGKSTLLKCLFGIYQK-----------DSGSILFQGKEIDFKSSKE---ALENGISMV 78 (491)
T ss_pred eeeeEEEcC--CcEEEEECCCCCCHHHHHHHHcCCCCC-----------CceEEEECCEECCCCCHHH---HHhCCEEEE
Confidence 689999999 889999999999999999999999866 7899999998864322110 011223444
Q ss_pred ccccccc---cchhHHHHHHhcC-----ChHHHHHHHHHHHHHccC--ccccccCcccccceecccee---------eee
Q 018394 88 RQVIAVS---KSSDIVLMVLDAS-----KSEGHRQILTKELEAVGL--RLNKRPPQIYFKKKKTGGIS---------FNS 148 (356)
Q Consensus 88 ~~~~~~~---~~~d~i~~v~d~~-----~~~~~~~~i~~~L~~~~i--~l~~~~~~lS~g~~qr~~ia---------l~~ 148 (356)
.|....+ ...+.+.+..... ......+.+.++|+.+++ .+++++.+||+||+||+.+| +++
T Consensus 79 ~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~lA~al~~~p~lllL 158 (491)
T PRK10982 79 HQELNLVLQRSVMDNMWLGRYPTKGMFVDQDKMYRDTKAIFDELDIDIDPRAKVATLSVSQMQMIEIAKAFSYNAKIVIM 158 (491)
T ss_pred ecccccccCCCHHHHhhcccccccccccCHHHHHHHHHHHHHHcCCCCCccCchhhCCHHHHHHHHHHHHHHhCCCEEEE
Confidence 4433222 2234443221110 112233567888999998 67888999999999999998 999
Q ss_pred cCCCCCCCHHHHHHH---HHHhc-ccCcEEEEccCCCHH
Q 018394 149 TLPLTHVDEKLCYQI---LHEYK-IHNAEVLFREDATVD 183 (356)
Q Consensus 149 DEp~~~LD~~~~~~i---l~~l~-~~~~~i~~thd~~~~ 183 (356)
||||++||+.....+ ++.+. .+.++|++|||.+..
T Consensus 159 DEPt~~LD~~~~~~l~~~l~~l~~~g~tvii~tH~~~~~ 197 (491)
T PRK10982 159 DEPTSSLTEKEVNHLFTIIRKLKERGCGIVYISHKMEEI 197 (491)
T ss_pred eCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHH
Confidence 999999999886555 44443 245899999997643
No 215
>PRK14269 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.82 E-value=1.1e-19 Score=167.66 Aligned_cols=177 Identities=14% Similarity=0.154 Sum_probs=119.9
Q ss_pred CCCCeEEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCccccccccccccceEEEECCEeecccCccccccccccCcccc
Q 018394 8 AGEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRG 87 (356)
Q Consensus 8 ~~~s~~v~~~~g~~v~LvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~~D~pGl~~~~~~~~~~~ 87 (356)
.+++|++.+ |++++|+|+||||||||+++|+|...+. .|..|.|.++|.++.-.+..- ....+++.
T Consensus 19 ~~isl~i~~--Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~--------~~~~G~i~~~g~~i~~~~~~~----~~~~i~~~ 84 (246)
T PRK14269 19 FDINMQIEQ--NKITALIGASGCGKSTFLRCFNRMNDKI--------AKIDGLVEIEGKDVKNQDVVA----LRKNVGMV 84 (246)
T ss_pred eeeEEEEcC--CCEEEEECCCCCCHHHHHHHHhcccCCC--------CCCceEEEECCEecccCCHHH----HhhhEEEE
Confidence 688999999 8899999999999999999999986420 137899999999875333211 11233444
Q ss_pred ccccccc--cchhHHHHHHhcC----ChHHHHHHHHHHHHHccC------ccccccCcccccceecccee---------e
Q 018394 88 RQVIAVS--KSSDIVLMVLDAS----KSEGHRQILTKELEAVGL------RLNKRPPQIYFKKKKTGGIS---------F 146 (356)
Q Consensus 88 ~~~~~~~--~~~d~i~~v~d~~----~~~~~~~~i~~~L~~~~i------~l~~~~~~lS~g~~qr~~ia---------l 146 (356)
.|....+ ...+.+.+..... ........+.+.++.+++ .+++.+..||+||+||++++ +
T Consensus 85 ~q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~ll 164 (246)
T PRK14269 85 FQQPNVFVKSIYENISYAPKLHGMIKNKDEEEALVVDCLQKVGLFEEVKDKLKQNALALSGGQQQRLCIARALAIKPKLL 164 (246)
T ss_pred ecCCccccccHHHHhhhHHhhcCcccChHHHHHHHHHHHHHcCCChhhhHHhcCCcccCCHHHHHHHHHHHHHhcCCCEE
Confidence 4433222 2234443321111 112233456788888888 25677899999999999998 9
Q ss_pred eecCCCCCCCHHHHHHHHH---HhcccCcEEEEccCCCHHHHHHHHhccccccceEEEeecCCC
Q 018394 147 NSTLPLTHVDEKLCYQILH---EYKIHNAEVLFREDATVDDLIDVIEGNRKYMKCVYVYNKIDV 207 (356)
Q Consensus 147 ~~DEp~~~LD~~~~~~il~---~l~~~~~~i~~thd~~~~~~~~~i~~~~~~~p~i~v~NK~Dl 207 (356)
++||||++||+.....+++ .+..+.+++++||+...... .+..+++++...+
T Consensus 165 lLDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~tH~~~~~~~---------~~d~i~~l~~G~i 219 (246)
T PRK14269 165 LLDEPTSALDPISSGVIEELLKELSHNLSMIMVTHNMQQGKR---------VADYTAFFHLGEL 219 (246)
T ss_pred EEcCCcccCCHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHh---------hCcEEEEEECCEE
Confidence 9999999999988555444 44345699999999754321 2356677766544
No 216
>PRK10744 pstB phosphate transporter ATP-binding protein; Provisional
Probab=99.82 E-value=1.3e-19 Score=168.63 Aligned_cols=165 Identities=15% Similarity=0.061 Sum_probs=111.9
Q ss_pred CCCCeEEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCccccccccccccceEEEECCEeecccCccccccccccCcccc
Q 018394 8 AGEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRG 87 (356)
Q Consensus 8 ~~~s~~v~~~~g~~v~LvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~~D~pGl~~~~~~~~~~~ 87 (356)
.++||++.+ |++++|+|+||||||||+++|+|...+. | ..|..|.+.++|.++...+.+. ......+++.
T Consensus 30 ~~isl~i~~--Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~---p---~~p~~G~i~~~g~~~~~~~~~~--~~~~~~i~~~ 99 (260)
T PRK10744 30 KNINLDIAK--NQVTAFIGPSGCGKSTLLRTFNRMYELY---P---EQRAEGEILLDGENILTPKQDI--ALLRAKVGMV 99 (260)
T ss_pred eceeEEEcC--CCEEEEECCCCCCHHHHHHHHhcccccC---C---CCCcceEEEECCEEccccccch--HHHhcceEEE
Confidence 588999999 8899999999999999999999986420 0 0136899999998764211110 0111233444
Q ss_pred ccccccc--cchhHHHHHHhcC---ChHHHHHHHHHHHHHccC------ccccccCcccccceecccee---------ee
Q 018394 88 RQVIAVS--KSSDIVLMVLDAS---KSEGHRQILTKELEAVGL------RLNKRPPQIYFKKKKTGGIS---------FN 147 (356)
Q Consensus 88 ~~~~~~~--~~~d~i~~v~d~~---~~~~~~~~i~~~L~~~~i------~l~~~~~~lS~g~~qr~~ia---------l~ 147 (356)
.|....+ ...+.+.+..... ......+.+.+.++.+++ .+++.+..||+||+||++|+ ++
T Consensus 100 ~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qrv~laral~~~p~lll 179 (260)
T PRK10744 100 FQKPTPFPMSIYDNIAFGVRLFEKLSRAEMDERVEWALTKAALWNEVKDKLHQSGYSLSGGQQQRLCIARGIAIRPEVLL 179 (260)
T ss_pred ecCCccCcCcHHHHHhhhHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHhcCCCCCCHHHHHHHHHHHHHHCCCCEEE
Confidence 4433222 2234443332211 122223457788888886 25778899999999999998 99
Q ss_pred ecCCCCCCCHHHHHH---HHHHhcccCcEEEEccCCCH
Q 018394 148 STLPLTHVDEKLCYQ---ILHEYKIHNAEVLFREDATV 182 (356)
Q Consensus 148 ~DEp~~~LD~~~~~~---il~~l~~~~~~i~~thd~~~ 182 (356)
+||||++||+..... +|+++....++|++||+...
T Consensus 180 LDEPt~~LD~~~~~~l~~~L~~~~~~~tiii~sH~~~~ 217 (260)
T PRK10744 180 LDEPCSALDPISTGRIEELITELKQDYTVVIVTHNMQQ 217 (260)
T ss_pred EcCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHH
Confidence 999999999987554 45455444589999999754
No 217
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=99.82 E-value=8.5e-20 Score=168.45 Aligned_cols=150 Identities=13% Similarity=0.143 Sum_probs=103.7
Q ss_pred CCCCeEEEec---CCcEEEEEcCCCCcHHHHHHHHHcCCCCccccccccccccceEEEECCEeecccCccccccccccCc
Q 018394 8 AGEGFEVTKF---GHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGK 84 (356)
Q Consensus 8 ~~~s~~v~~~---~g~~v~LvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~~D~pGl~~~~~~~~ 84 (356)
++++|++... .|++++|+|+||||||||+++|+|...| ..|.+.++|..+..+. .. .
T Consensus 11 ~~~~l~~~~~~i~~Ge~~~i~G~NGsGKSTLlk~L~G~~~p-----------~~G~i~~~g~~i~~~~------q~---~ 70 (246)
T cd03237 11 GEFTLEVEGGSISESEVIGILGPNGIGKTTFIKMLAGVLKP-----------DEGDIEIELDTVSYKP------QY---I 70 (246)
T ss_pred CcEEEEEecCCcCCCCEEEEECCCCCCHHHHHHHHhCCCcC-----------CCCeEEECCceEEEec------cc---c
Confidence 5677777631 3689999999999999999999999876 7899999886443221 00 0
Q ss_pred cccccccccccchhHHHHHHhcCChHHHHHHHHHHHHHccC--ccccccCcccccceecccee---------eeecCCCC
Q 018394 85 GRGRQVIAVSKSSDIVLMVLDASKSEGHRQILTKELEAVGL--RLNKRPPQIYFKKKKTGGIS---------FNSTLPLT 153 (356)
Q Consensus 85 ~~~~~~~~~~~~~d~i~~v~d~~~~~~~~~~i~~~L~~~~i--~l~~~~~~lS~g~~qr~~ia---------l~~DEp~~ 153 (356)
. ........+++......... ......++++.+++ .+++.+..||+||+||++|| +++||||+
T Consensus 71 ~----~~~~~tv~e~l~~~~~~~~~--~~~~~~~~l~~l~l~~~~~~~~~~LSgGe~qrv~iaraL~~~p~llllDEPt~ 144 (246)
T cd03237 71 K----ADYEGTVRDLLSSITKDFYT--HPYFKTEIAKPLQIEQILDREVPELSGGELQRVAIAACLSKDADIYLLDEPSA 144 (246)
T ss_pred c----CCCCCCHHHHHHHHhhhccc--cHHHHHHHHHHcCCHHHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcc
Confidence 0 00011223333222211111 11235677888888 67888999999999999998 99999999
Q ss_pred CCCHHHHHH---HHHHhcc--cCcEEEEccCCCHH
Q 018394 154 HVDEKLCYQ---ILHEYKI--HNAEVLFREDATVD 183 (356)
Q Consensus 154 ~LD~~~~~~---il~~l~~--~~~~i~~thd~~~~ 183 (356)
+||+..... +++++.. +.++|++||+....
T Consensus 145 ~LD~~~~~~l~~~l~~~~~~~~~tiiivsHd~~~~ 179 (246)
T cd03237 145 YLDVEQRLMASKVIRRFAENNEKTAFVVEHDIIMI 179 (246)
T ss_pred cCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHH
Confidence 999988554 4445432 46999999997644
No 218
>PRK14248 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.82 E-value=1.5e-19 Score=168.85 Aligned_cols=181 Identities=16% Similarity=0.111 Sum_probs=117.6
Q ss_pred CCCCeEEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCccccccccccccceEEEECCEeecccCccccccccccCcccc
Q 018394 8 AGEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRG 87 (356)
Q Consensus 8 ~~~s~~v~~~~g~~v~LvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~~D~pGl~~~~~~~~~~~ 87 (356)
++++|++.+ |++++|+|+||||||||+++|+|..... | ..|..|.+.++|.++.... +.. ......+++.
T Consensus 38 ~~vsl~i~~--Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~---~---~~~~~G~i~~~g~~i~~~~-~~~-~~~~~~i~~v 107 (268)
T PRK14248 38 NDISMDIEK--HAVTALIGPSGCGKSTFLRSINRMNDLI---P---SARSEGEILYEGLNILDSN-INV-VNLRREIGMV 107 (268)
T ss_pred eceEEEEcC--CCEEEEECCCCCCHHHHHHHHHhccccc---C---CCCCceEEEECCEEccccc-ccH-HHHhccEEEE
Confidence 689999999 8899999999999999999999975310 0 0137899999998764211 110 0011233444
Q ss_pred cccccccc--chhHHHHHHhcCC---hHHHHHHHHHHHHHccC------ccccccCcccccceecccee---------ee
Q 018394 88 RQVIAVSK--SSDIVLMVLDASK---SEGHRQILTKELEAVGL------RLNKRPPQIYFKKKKTGGIS---------FN 147 (356)
Q Consensus 88 ~~~~~~~~--~~d~i~~v~d~~~---~~~~~~~i~~~L~~~~i------~l~~~~~~lS~g~~qr~~ia---------l~ 147 (356)
.|....+. ..+.+.+...... .....+.+.+.++.+++ .+++.+..||+||+||+.|+ ++
T Consensus 108 ~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrl~laral~~~p~lll 187 (268)
T PRK14248 108 FQKPNPFPKSIYNNITHALKYAGERRKSVLDEIVEESLTKAALWDEVKDRLHSSALSLSGGQQQRLCIARTLAMKPAVLL 187 (268)
T ss_pred ecCCccCcccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCCcchHHHHhcCcccCCHHHHHHHHHHHHHhCCCCEEE
Confidence 44433232 2334433222111 11223446667777776 25678899999999999988 99
Q ss_pred ecCCCCCCCHHHHHH---HHHHhcccCcEEEEccCCCHHHHHHHHhccccccceEEEeecCCC
Q 018394 148 STLPLTHVDEKLCYQ---ILHEYKIHNAEVLFREDATVDDLIDVIEGNRKYMKCVYVYNKIDV 207 (356)
Q Consensus 148 ~DEp~~~LD~~~~~~---il~~l~~~~~~i~~thd~~~~~~~~~i~~~~~~~p~i~v~NK~Dl 207 (356)
+||||++||+..... +++.+....+++++||+...... .+..+++++...+
T Consensus 188 LDEPt~~LD~~~~~~l~~~l~~~~~~~tiii~tH~~~~~~~---------~~d~v~~l~~G~i 241 (268)
T PRK14248 188 LDEPASALDPISNAKIEELITELKEEYSIIIVTHNMQQALR---------VSDRTAFFLNGDL 241 (268)
T ss_pred EcCCCcccCHHHHHHHHHHHHHHhcCCEEEEEEeCHHHHHH---------hCCEEEEEECCEE
Confidence 999999999988554 45555445689999999754321 2356667765543
No 219
>PRK14235 phosphate transporter ATP-binding protein; Provisional
Probab=99.82 E-value=9e-20 Score=170.34 Aligned_cols=166 Identities=16% Similarity=0.138 Sum_probs=111.5
Q ss_pred CCCCeEEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCccccccccccccceEEEECCEeecccCccccccccccCcccc
Q 018394 8 AGEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRG 87 (356)
Q Consensus 8 ~~~s~~v~~~~g~~v~LvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~~D~pGl~~~~~~~~~~~ 87 (356)
.++||++.+ |++++|+|+||||||||+++|+|...+- .-.|..|.|.++|.++...+.. .. .....+++.
T Consensus 36 ~~isl~i~~--Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~------~~~~~~G~I~~~g~~i~~~~~~-~~-~~~~~i~~v 105 (267)
T PRK14235 36 FDVDLDIPE--KTVTAFIGPSGCGKSTFLRCLNRMNDTI------DGCRVTGKITLDGEDIYDPRLD-VV-ELRARVGMV 105 (267)
T ss_pred EEEEEEEcC--CCEEEEECCCCCCHHHHHHHHHhhcccc------cCCCCceEEEECCEECcccccc-hH-HHhhceEEE
Confidence 578999999 8899999999999999999999987420 0013689999999876421110 00 011223443
Q ss_pred ccccccc--cchhHHHHHHhcC----ChHHHHHHHHHHHHHccC------ccccccCcccccceecccee---------e
Q 018394 88 RQVIAVS--KSSDIVLMVLDAS----KSEGHRQILTKELEAVGL------RLNKRPPQIYFKKKKTGGIS---------F 146 (356)
Q Consensus 88 ~~~~~~~--~~~d~i~~v~d~~----~~~~~~~~i~~~L~~~~i------~l~~~~~~lS~g~~qr~~ia---------l 146 (356)
.|....+ ...+.+.+..... ......+.+.+.++.+++ .+++.+..||+||+||++|+ +
T Consensus 106 ~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrv~laral~~~p~ll 185 (267)
T PRK14235 106 FQKPNPFPKSIYENVAYGPRIHGLARSKAELDEIVETSLRKAGLWEEVKDRLHEPGTGLSGGQQQRLCIARAIAVSPEVI 185 (267)
T ss_pred ecCCCCCCCcHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCchhhhHHhhCCcccCCHHHHHHHHHHHHHHcCCCEE
Confidence 4433222 2244443322111 111223456788888888 24677899999999999998 9
Q ss_pred eecCCCCCCCHHHHHHH---HHHhcccCcEEEEccCCCHH
Q 018394 147 NSTLPLTHVDEKLCYQI---LHEYKIHNAEVLFREDATVD 183 (356)
Q Consensus 147 ~~DEp~~~LD~~~~~~i---l~~l~~~~~~i~~thd~~~~ 183 (356)
++||||++||+.....+ |+.+..+.+++++||+.+..
T Consensus 186 lLDEPt~~LD~~~~~~l~~~L~~l~~~~tiiivtH~~~~~ 225 (267)
T PRK14235 186 LMDEPCSALDPIATAKVEELIDELRQNYTIVIVTHSMQQA 225 (267)
T ss_pred EEeCCCcCCCHHHHHHHHHHHHHHhcCCeEEEEEcCHHHH
Confidence 99999999999885544 44444445899999996543
No 220
>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.82 E-value=5.8e-20 Score=168.08 Aligned_cols=173 Identities=13% Similarity=0.114 Sum_probs=112.1
Q ss_pred CCCCeEEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCccccccccccccceEEEECCEeecccCccccccccccCcccc
Q 018394 8 AGEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRG 87 (356)
Q Consensus 8 ~~~s~~v~~~~g~~v~LvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~~D~pGl~~~~~~~~~~~ 87 (356)
.+++|++.+ |++++|+|+||||||||+++|+|...| ..|.+.++|.++.-.+...+ ...+++.
T Consensus 19 ~~i~~~i~~--Ge~~~i~G~nGsGKSTLl~~l~Gl~~p-----------~~G~i~~~g~~~~~~~~~~~----~~~i~~~ 81 (234)
T cd03251 19 RDISLDIPA--GETVALVGPSGSGKSTLVNLIPRFYDV-----------DSGRILIDGHDVRDYTLASL----RRQIGLV 81 (234)
T ss_pred eeeeEEEcC--CCEEEEECCCCCCHHHHHHHHhccccC-----------CCCEEEECCEEhhhCCHHHH----HhhEEEe
Confidence 688999999 889999999999999999999999876 79999999987643221111 1123333
Q ss_pred cccccccc--chhHHHHHHhcCChHHHH-----HHHHHHHHHc--cC--ccccccCcccccceecccee---------ee
Q 018394 88 RQVIAVSK--SSDIVLMVLDASKSEGHR-----QILTKELEAV--GL--RLNKRPPQIYFKKKKTGGIS---------FN 147 (356)
Q Consensus 88 ~~~~~~~~--~~d~i~~v~d~~~~~~~~-----~~i~~~L~~~--~i--~l~~~~~~lS~g~~qr~~ia---------l~ 147 (356)
.|....+. ..+.+.+........... ..+.+.++.+ ++ .+++.+..||+|++||+.++ ++
T Consensus 82 ~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~lll 161 (234)
T cd03251 82 SQDVFLFNDTVAENIAYGRPGATREEVEEAARAANAHEFIMELPEGYDTVIGERGVKLSGGQRQRIAIARALLKDPPILI 161 (234)
T ss_pred CCCCeeccccHHHHhhccCCCCCHHHHHHHHHHcCcHHHHHhcccCcceeeccCCCcCCHHHHHHHHHHHHHhcCCCEEE
Confidence 33322222 123332211111111100 1133444444 44 45677899999999999988 99
Q ss_pred ecCCCCCCCHHHHHHH---HHHhcccCcEEEEccCCCHHHHHHHHhccccccceEEEeecCCC
Q 018394 148 STLPLTHVDEKLCYQI---LHEYKIHNAEVLFREDATVDDLIDVIEGNRKYMKCVYVYNKIDV 207 (356)
Q Consensus 148 ~DEp~~~LD~~~~~~i---l~~l~~~~~~i~~thd~~~~~~~~~i~~~~~~~p~i~v~NK~Dl 207 (356)
+||||++||+.....+ +..+..+.+++++||+...... +..+++++..-+
T Consensus 162 LDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~----------~d~v~~l~~G~i 214 (234)
T cd03251 162 LDEATSALDTESERLVQAALERLMKNRTTFVIAHRLSTIEN----------ADRIVVLEDGKI 214 (234)
T ss_pred EeCccccCCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHhh----------CCEEEEecCCeE
Confidence 9999999999885544 4444445689999999864322 355666655433
No 221
>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.
Probab=99.82 E-value=5e-20 Score=167.70 Aligned_cols=159 Identities=14% Similarity=0.118 Sum_probs=107.4
Q ss_pred CCCCeEEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCccccccccccccceEEEECCEeecccCccccccccccCcccc
Q 018394 8 AGEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRG 87 (356)
Q Consensus 8 ~~~s~~v~~~~g~~v~LvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~~D~pGl~~~~~~~~~~~ 87 (356)
.+++|++.+ |++++|+|+||||||||+++|+|...+ ..|.+.++|.++...+... ....+++.
T Consensus 31 ~~is~~i~~--Ge~~~i~G~nGsGKSTLl~~l~Gl~~~-----------~~G~i~~~g~~~~~~~~~~----~~~~i~~~ 93 (226)
T cd03248 31 QDVSFTLHP--GEVTALVGPSGSGKSTVVALLENFYQP-----------QGGQVLLDGKPISQYEHKY----LHSKVSLV 93 (226)
T ss_pred cceEEEEcC--CCEEEEECCCCCCHHHHHHHHhcCcCC-----------CCcEEEECCCchHHcCHHH----HHhhEEEE
Confidence 688999999 889999999999999999999999866 7899999998764332111 11123333
Q ss_pred cccccccc--chhHHHHHHhcCChHH-----HHHHHHHHHHHc--cC--ccccccCcccccceecccee---------ee
Q 018394 88 RQVIAVSK--SSDIVLMVLDASKSEG-----HRQILTKELEAV--GL--RLNKRPPQIYFKKKKTGGIS---------FN 147 (356)
Q Consensus 88 ~~~~~~~~--~~d~i~~v~d~~~~~~-----~~~~i~~~L~~~--~i--~l~~~~~~lS~g~~qr~~ia---------l~ 147 (356)
.|....+. ..+.+.+......... ....+.+.++.+ |+ .++..+.+||+|++||++++ ++
T Consensus 94 ~q~~~l~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~~~~~LSgG~~qrv~laral~~~p~lll 173 (226)
T cd03248 94 GQEPVLFARSLQDNIAYGLQSCSFECVKEAAQKAHAHSFISELASGYDTEVGEKGSQLSGGQKQRVAIARALIRNPQVLI 173 (226)
T ss_pred ecccHHHhhhHHHHhccccCCCCHHHHHHHHHHcCcHHHHHhccccccchhhcCCCcCCHHHHHHHHHHHHHhcCCCEEE
Confidence 33322221 1222221111111111 111245667777 66 57888999999999999998 99
Q ss_pred ecCCCCCCCHHHHHHH---HHHhcccCcEEEEccCCCHH
Q 018394 148 STLPLTHVDEKLCYQI---LHEYKIHNAEVLFREDATVD 183 (356)
Q Consensus 148 ~DEp~~~LD~~~~~~i---l~~l~~~~~~i~~thd~~~~ 183 (356)
+||||++||+.....+ +..+....+++++||+.+..
T Consensus 174 lDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~ 212 (226)
T cd03248 174 LDEATSALDAESEQQVQQALYDWPERRTVLVIAHRLSTV 212 (226)
T ss_pred EeCCcccCCHHHHHHHHHHHHHHcCCCEEEEEECCHHHH
Confidence 9999999999986554 44444445899999997654
No 222
>PRK14244 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.82 E-value=1.4e-19 Score=167.38 Aligned_cols=181 Identities=16% Similarity=0.104 Sum_probs=118.1
Q ss_pred CCCCeEEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCccccccccccccceEEEECCEeecccCccccccccccCcccc
Q 018394 8 AGEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRG 87 (356)
Q Consensus 8 ~~~s~~v~~~~g~~v~LvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~~D~pGl~~~~~~~~~~~ 87 (356)
.+++|++.+ |+.++|+|+||||||||+++|+|...+. | ..|..|.+.++|.++...+.+- .......++.
T Consensus 22 ~~is~~i~~--Ge~~~I~G~nGsGKSTLl~~i~G~~~~~---~---~~~~~G~i~~~g~~i~~~~~~~--~~~~~~i~~v 91 (251)
T PRK14244 22 FDINLDIYK--REVTAFIGPSGCGKSTFLRCFNRMNDFV---P---NCKVKGELDIDGIDVYSVDTNV--VLLRAKVGMV 91 (251)
T ss_pred eeeEEEEcC--CCEEEEECCCCCCHHHHHHHHHhhcccC---C---CCCcceEEEECCEehHhcccch--HHHhhhEEEE
Confidence 589999999 8899999999999999999999986420 0 0026899999998764332110 0011223344
Q ss_pred cccccccc--chhHHHHHHhcCC----hHHHHHHHHHHHHHccC------ccccccCcccccceecccee---------e
Q 018394 88 RQVIAVSK--SSDIVLMVLDASK----SEGHRQILTKELEAVGL------RLNKRPPQIYFKKKKTGGIS---------F 146 (356)
Q Consensus 88 ~~~~~~~~--~~d~i~~v~d~~~----~~~~~~~i~~~L~~~~i------~l~~~~~~lS~g~~qr~~ia---------l 146 (356)
.|....+. ..+.+.+...... .....+.+.+.++.+++ .+++.+..||+||+||+.++ +
T Consensus 92 ~q~~~~~~~tv~~ni~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qrv~laral~~~p~ll 171 (251)
T PRK14244 92 FQKPNPFPKSIYDNVAYGPKLHGLAKNKKKLDEIVEKSLTSVGLWEELGDRLKDSAFELSGGQQQRLCIARAIAVKPTML 171 (251)
T ss_pred ecCcccccCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCCchhhhHhhcChhhCCHHHHHHHHHHHHHhcCCCEE
Confidence 44332222 2344433321111 11223456778888887 24667889999999999998 9
Q ss_pred eecCCCCCCCHHHHHH---HHHHhcccCcEEEEccCCCHHHHHHHHhccccccceEEEeecCCC
Q 018394 147 NSTLPLTHVDEKLCYQ---ILHEYKIHNAEVLFREDATVDDLIDVIEGNRKYMKCVYVYNKIDV 207 (356)
Q Consensus 147 ~~DEp~~~LD~~~~~~---il~~l~~~~~~i~~thd~~~~~~~~~i~~~~~~~p~i~v~NK~Dl 207 (356)
++||||++||+..... +|..+..+.+++++||+...... .+..+++++..-+
T Consensus 172 llDEPt~~LD~~~~~~l~~~l~~~~~~~tiiiisH~~~~~~~---------~~d~i~~l~~G~i 226 (251)
T PRK14244 172 LMDEPCSALDPVATNVIENLIQELKKNFTIIVVTHSMKQAKK---------VSDRVAFFQSGRI 226 (251)
T ss_pred EEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHh---------hcCEEEEEECCEE
Confidence 9999999999987544 45454445699999999764321 1355666665433
No 223
>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD. This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.
Probab=99.82 E-value=1.4e-19 Score=165.22 Aligned_cols=176 Identities=20% Similarity=0.157 Sum_probs=117.6
Q ss_pred CCCCeEEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCccccccccccccceEEEECCEeecccCccccccccccCcccc
Q 018394 8 AGEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRG 87 (356)
Q Consensus 8 ~~~s~~v~~~~g~~v~LvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~~D~pGl~~~~~~~~~~~ 87 (356)
.+++|++.+ |++++|+|+||||||||+++|+|...|. .+ +..|.+.++|.++...+.. ...+++.
T Consensus 3 ~~vs~~i~~--Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~-----~~--~~~G~i~~~g~~~~~~~~~------~~~i~~~ 67 (230)
T TIGR02770 3 QDLNLSLKR--GEVLALVGESGSGKSLTCLAILGLLPPG-----LT--QTSGEILLDGRPLLPLSIR------GRHIATI 67 (230)
T ss_pred cceeEEEcC--CCEEEEECCCCCCHHHHHHHHhcCCCCc-----cC--ccccEEEECCEechhhhhh------hheeEEE
Confidence 478999999 8899999999999999999999997540 00 3689999999876432110 1123333
Q ss_pred ccccc--c---ccchhHHHHHHhcC--ChHHHHHHHHHHHHHccCc-----cccccCcccccceecccee---------e
Q 018394 88 RQVIA--V---SKSSDIVLMVLDAS--KSEGHRQILTKELEAVGLR-----LNKRPPQIYFKKKKTGGIS---------F 146 (356)
Q Consensus 88 ~~~~~--~---~~~~d~i~~v~d~~--~~~~~~~~i~~~L~~~~i~-----l~~~~~~lS~g~~qr~~ia---------l 146 (356)
.|... . +...+.+.+..... ......+.+.+.++.+++. .++.+..||+||+||++++ +
T Consensus 68 ~q~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~vl 147 (230)
T TIGR02770 68 MQNPRTAFNPLFTMGNHAIETLRSLGKLSKQARALILEALEAVGLPDPEEVLKKYPFQLSGGMLQRVMIALALLLEPPFL 147 (230)
T ss_pred ecCchhhcCcccCHHHHHHHHHHHcCccHHHHHHHHHHHHHHcCCCchHHHHhCChhhcCHHHHHHHHHHHHHhcCCCEE
Confidence 33321 1 11123332222111 1122345678889999883 5778899999999999988 9
Q ss_pred eecCCCCCCCHHHHH---HHHHHhcc--cCcEEEEccCCCHHHHHHHHhccccccceEEEeecCCC
Q 018394 147 NSTLPLTHVDEKLCY---QILHEYKI--HNAEVLFREDATVDDLIDVIEGNRKYMKCVYVYNKIDV 207 (356)
Q Consensus 147 ~~DEp~~~LD~~~~~---~il~~l~~--~~~~i~~thd~~~~~~~~~i~~~~~~~p~i~v~NK~Dl 207 (356)
++||||++||..... +++.++.. +.+++++||+.+.... .+..+++++...+
T Consensus 148 lLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~---------~~d~i~~l~~G~i 204 (230)
T TIGR02770 148 IADEPTTDLDVVNQARVLKLLRELRQLFGTGILLITHDLGVVAR---------IADEVAVMDDGRI 204 (230)
T ss_pred EEcCCccccCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHH---------hCCEEEEEECCEE
Confidence 999999999998754 44555543 4589999999754321 1355666665544
No 224
>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit. Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.
Probab=99.82 E-value=1.3e-19 Score=164.63 Aligned_cols=153 Identities=18% Similarity=0.158 Sum_probs=109.9
Q ss_pred CCCCeEEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCccccccccccccceEEEECCEeecccCccccccccccCcccc
Q 018394 8 AGEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRG 87 (356)
Q Consensus 8 ~~~s~~v~~~~g~~v~LvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~~D~pGl~~~~~~~~~~~ 87 (356)
.+++|++.+ |++++|+|+|||||||||++|+|...+ ..|.+.++|.++...+ . ...++.
T Consensus 17 ~~vs~~i~~--Ge~~~i~G~nGsGKSTLl~~l~G~~~~-----------~~G~i~~~~~~~~~~~---~-----~~~~~~ 75 (223)
T TIGR03740 17 NNISLTVPK--NSVYGLLGPNGAGKSTLLKMITGILRP-----------TSGEIIFDGHPWTRKD---L-----HKIGSL 75 (223)
T ss_pred eeeEEEEcC--CcEEEEECCCCCCHHHHHHHHhCCCCC-----------CceEEEECCEeccccc---c-----ccEEEE
Confidence 588999999 889999999999999999999999766 7999999998653211 0 112222
Q ss_pred ccccccc---cchhHHHHHHhcCChHHHHHHHHHHHHHccC--ccccccCcccccceecccee---------eeecCCCC
Q 018394 88 RQVIAVS---KSSDIVLMVLDASKSEGHRQILTKELEAVGL--RLNKRPPQIYFKKKKTGGIS---------FNSTLPLT 153 (356)
Q Consensus 88 ~~~~~~~---~~~d~i~~v~d~~~~~~~~~~i~~~L~~~~i--~l~~~~~~lS~g~~qr~~ia---------l~~DEp~~ 153 (356)
.+....+ ...+.+.+....... ....+.+.++.+++ .+++.+..||+|++||+.++ +++||||+
T Consensus 76 ~q~~~~~~~~t~~~~~~~~~~~~~~--~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~~rv~laral~~~p~llllDEP~~ 153 (223)
T TIGR03740 76 IESPPLYENLTARENLKVHTTLLGL--PDSRIDEVLNIVDLTNTGKKKAKQFSLGMKQRLGIAIALLNHPKLLILDEPTN 153 (223)
T ss_pred cCCCCccccCCHHHHHHHHHHHcCC--CHHHHHHHHHHcCCcHHHhhhHhhCCHHHHHHHHHHHHHhcCCCEEEECCCcc
Confidence 3322222 223444332222111 12456788899998 57888999999999999887 99999999
Q ss_pred CCCHHHHHH---HHHHhcc-cCcEEEEccCCCHH
Q 018394 154 HVDEKLCYQ---ILHEYKI-HNAEVLFREDATVD 183 (356)
Q Consensus 154 ~LD~~~~~~---il~~l~~-~~~~i~~thd~~~~ 183 (356)
+||+..... +|.++.. +.+++++||+.+..
T Consensus 154 ~LD~~~~~~l~~~L~~~~~~~~tiii~sH~~~~~ 187 (223)
T TIGR03740 154 GLDPIGIQELRELIRSFPEQGITVILSSHILSEV 187 (223)
T ss_pred CCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHH
Confidence 999988554 4444443 45899999997643
No 225
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=99.82 E-value=1.2e-19 Score=184.35 Aligned_cols=160 Identities=13% Similarity=0.138 Sum_probs=111.5
Q ss_pred CCCCeEEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCccccccccccccceEEEECCEeecccCccccccccccCcccc
Q 018394 8 AGEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRG 87 (356)
Q Consensus 8 ~~~s~~v~~~~g~~v~LvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~~D~pGl~~~~~~~~~~~ 87 (356)
.++||++.+ |++++|+|+||||||||+++|+|...| ..|.|.++|.++.-.. + . ......+++.
T Consensus 280 ~~isl~i~~--Ge~~~l~G~NGsGKSTLlk~i~Gl~~p-----------~~G~I~~~g~~~~~~~-~-~-~~~~~~i~~v 343 (510)
T PRK09700 280 RDISFSVCR--GEILGFAGLVGSGRTELMNCLFGVDKR-----------AGGEIRLNGKDISPRS-P-L-DAVKKGMAYI 343 (510)
T ss_pred cceeEEEcC--CcEEEEECCCCCCHHHHHHHHhCCCcC-----------CCCeEEECCEECCCCC-H-H-HHHHCCcEEc
Confidence 689999999 889999999999999999999999876 7899999998763211 1 0 0011234444
Q ss_pred cccc---cccc---chhHHHHHHhc-----------CChHHHHHHHHHHHHHccC---ccccccCcccccceecccee--
Q 018394 88 RQVI---AVSK---SSDIVLMVLDA-----------SKSEGHRQILTKELEAVGL---RLNKRPPQIYFKKKKTGGIS-- 145 (356)
Q Consensus 88 ~~~~---~~~~---~~d~i~~v~d~-----------~~~~~~~~~i~~~L~~~~i---~l~~~~~~lS~g~~qr~~ia-- 145 (356)
.|.. ..+. ..+.+.+.... .......+.+.++|+.+++ ..++++.+||+||+||+.||
T Consensus 344 ~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrv~lAra 423 (510)
T PRK09700 344 TESRRDNGFFPNFSIAQNMAISRSLKDGGYKGAMGLFHEVDEQRTAENQRELLALKCHSVNQNITELSGGNQQKVLISKW 423 (510)
T ss_pred cCccccCCCcCCCcHHHHhccccccccccccccccccChHHHHHHHHHHHHhcCCCCCCccCccccCChHHHHHHHHHHH
Confidence 4431 1222 23333221110 0112233457788999998 36888999999999999998
Q ss_pred -------eeecCCCCCCCHHHHHHHH---HHhcc-cCcEEEEccCCCHH
Q 018394 146 -------FNSTLPLTHVDEKLCYQIL---HEYKI-HNAEVLFREDATVD 183 (356)
Q Consensus 146 -------l~~DEp~~~LD~~~~~~il---~~l~~-~~~~i~~thd~~~~ 183 (356)
+++||||++||+.....++ +.+.. +.++|++|||....
T Consensus 424 l~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvi~vsHd~~~~ 472 (510)
T PRK09700 424 LCCCPEVIIFDEPTRGIDVGAKAEIYKVMRQLADDGKVILMVSSELPEI 472 (510)
T ss_pred HhcCCCEEEECCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHH
Confidence 9999999999998855544 44433 45999999997543
No 226
>PRK14245 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.82 E-value=1.7e-19 Score=166.68 Aligned_cols=179 Identities=18% Similarity=0.169 Sum_probs=117.5
Q ss_pred CCCCeEEEecCCcEEEEEcCCCCcHHHHHHHHHcCCC--CccccccccccccceEEEECCEeecccCccccccccccCcc
Q 018394 8 AGEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHS--EAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKG 85 (356)
Q Consensus 8 ~~~s~~v~~~~g~~v~LvG~~gaGKSTLln~L~g~~~--~vs~~p~TT~~~~~G~i~~~g~~i~~~D~pGl~~~~~~~~~ 85 (356)
.++||++.+ |+.++|+|+||||||||+++|+|... +. ++..|.+.++|.++...+. .. ......++
T Consensus 20 ~~vs~~i~~--Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~--------~~~~G~i~~~g~~~~~~~~-~~-~~~~~~i~ 87 (250)
T PRK14245 20 KGISMEIEE--KSVVAFIGPSGCGKSTFLRLFNRMNDLIPA--------TRLEGEIRIDGRNIYDKGV-QV-DELRKNVG 87 (250)
T ss_pred eeeeEEEeC--CCEEEEECCCCCCHHHHHHHHhhhhcccCC--------CCCceEEEECCEecccccc-cH-HHHhhheE
Confidence 588999999 88999999999999999999999631 10 1247999999987643211 00 01112334
Q ss_pred ccccccccc--cchhHHHHHHhcC---ChHHHHHHHHHHHHHccC------ccccccCcccccceecccee---------
Q 018394 86 RGRQVIAVS--KSSDIVLMVLDAS---KSEGHRQILTKELEAVGL------RLNKRPPQIYFKKKKTGGIS--------- 145 (356)
Q Consensus 86 ~~~~~~~~~--~~~d~i~~v~d~~---~~~~~~~~i~~~L~~~~i------~l~~~~~~lS~g~~qr~~ia--------- 145 (356)
+..|....+ ...+.+.+..... ......+.+.+.++.+++ .+++.+..||+||+||++++
T Consensus 88 ~v~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~l 167 (250)
T PRK14245 88 MVFQRPNPFPKSIFENVAYGLRVNGVKDNAFIRQRVEETLKGAALWDEVKDKLKESAFALSGGQQQRLCIARAMAVSPSV 167 (250)
T ss_pred EEecCCccCcccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCCcchhhhhhCCcccCCHHHHHHHHHHHHHhcCCCE
Confidence 444433222 2234444332221 112233456778888886 25678899999999999988
Q ss_pred eeecCCCCCCCHHHHHH---HHHHhcccCcEEEEccCCCHHHHHHHHhccccccceEEEeecCCC
Q 018394 146 FNSTLPLTHVDEKLCYQ---ILHEYKIHNAEVLFREDATVDDLIDVIEGNRKYMKCVYVYNKIDV 207 (356)
Q Consensus 146 l~~DEp~~~LD~~~~~~---il~~l~~~~~~i~~thd~~~~~~~~~i~~~~~~~p~i~v~NK~Dl 207 (356)
+++||||++||+..... +|+.+..+.++|++||+.....- .+..+++++..-+
T Consensus 168 llLDEPt~~LD~~~~~~l~~~l~~~~~~~tiiivtH~~~~~~~---------~~d~v~~l~~G~~ 223 (250)
T PRK14245 168 LLMDEPASALDPISTAKVEELIHELKKDYTIVIVTHNMQQAAR---------VSDKTAFFYMGEM 223 (250)
T ss_pred EEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHh---------hCCEEEEEECCEE
Confidence 99999999999988554 44444445689999999764321 1355666665443
No 227
>TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein.
Probab=99.81 E-value=1.5e-19 Score=165.92 Aligned_cols=156 Identities=22% Similarity=0.241 Sum_probs=113.5
Q ss_pred CCCCeEEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCccccccccccccceEEEECCEeecccCccccccccccCcccc
Q 018394 8 AGEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRG 87 (356)
Q Consensus 8 ~~~s~~v~~~~g~~v~LvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~~D~pGl~~~~~~~~~~~ 87 (356)
.++||++.+ |++++|+|+||||||||+++|+|...+ ..|.+.++|.++...+. .....++.
T Consensus 17 ~~is~~i~~--Ge~~~l~G~nGsGKSTLl~~i~G~~~~-----------~~G~i~i~g~~~~~~~~------~~~~i~~~ 77 (237)
T TIGR00968 17 DDVNLEVPT--GSLVALLGPSGSGKSTLLRIIAGLEQP-----------DSGRIRLNGQDATRVHA------RDRKIGFV 77 (237)
T ss_pred eeEEEEEcC--CCEEEEECCCCCCHHHHHHHHhcCCCC-----------CceEEEECCEEcCcCCh------hhcCEEEE
Confidence 588999999 889999999999999999999999766 78999999987653321 11233344
Q ss_pred ccccccccc---hhHHHHHHhcC--ChHHHHHHHHHHHHHccC--ccccccCcccccceecccee---------eeecCC
Q 018394 88 RQVIAVSKS---SDIVLMVLDAS--KSEGHRQILTKELEAVGL--RLNKRPPQIYFKKKKTGGIS---------FNSTLP 151 (356)
Q Consensus 88 ~~~~~~~~~---~d~i~~v~d~~--~~~~~~~~i~~~L~~~~i--~l~~~~~~lS~g~~qr~~ia---------l~~DEp 151 (356)
.+....+.. .+.+.+..... ......+.+.++++.+++ ..++.+..||+||+||+.++ +++|||
T Consensus 78 ~q~~~~~~~~t~~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qrl~laral~~~p~llllDEP 157 (237)
T TIGR00968 78 FQHYALFKHLTVRDNIAFGLEIRKHPKAKIKARVEELLELVQLEGLGDRYPNQLSGGQRQRVALARALAVEPQVLLLDEP 157 (237)
T ss_pred ecChhhccCCcHHHHHHhHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCC
Confidence 443333332 34443322211 112233556788999998 67888999999999999988 999999
Q ss_pred CCCCCHHHHHHH---HHHhcc--cCcEEEEccCCCH
Q 018394 152 LTHVDEKLCYQI---LHEYKI--HNAEVLFREDATV 182 (356)
Q Consensus 152 ~~~LD~~~~~~i---l~~l~~--~~~~i~~thd~~~ 182 (356)
|++||......+ +.++.. +.+++++||+...
T Consensus 158 ~~~LD~~~~~~~~~~l~~~~~~~~~tvli~sH~~~~ 193 (237)
T TIGR00968 158 FGALDAKVRKELRSWLRKLHDEVHVTTVFVTHDQEE 193 (237)
T ss_pred cccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHH
Confidence 999999885544 444443 4699999998754
No 228
>PRK14237 phosphate transporter ATP-binding protein; Provisional
Probab=99.81 E-value=2.4e-19 Score=167.47 Aligned_cols=181 Identities=17% Similarity=0.156 Sum_probs=119.6
Q ss_pred CCCCeEEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCccccccccccccceEEEECCEeecccCccccccccccCcccc
Q 018394 8 AGEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRG 87 (356)
Q Consensus 8 ~~~s~~v~~~~g~~v~LvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~~D~pGl~~~~~~~~~~~ 87 (356)
+++||++.+ |++++|+|+|||||||||++|+|...+... .|..|.|.++|.++...+.+ . ......+++.
T Consensus 37 ~~vsl~i~~--Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~------~~~~G~i~~~g~~~~~~~~~-~-~~~~~~i~~v 106 (267)
T PRK14237 37 KGIDMQFEK--NKITALIGPSGSGKSTYLRSLNRMNDTIDI------ARVTGQILYRGIDINRKEIN-V-YEMRKHIGMV 106 (267)
T ss_pred eeeEEEEcC--CCEEEEECCCCCCHHHHHHHHHhccCccCC------CCcceEEEECCEEcccccCC-h-HHHhcceEEE
Confidence 588999999 889999999999999999999998743100 13689999999877421110 0 0112233444
Q ss_pred ccccccc--cchhHHHHHHhcC---ChHHHHHHHHHHHHHccC------ccccccCcccccceecccee---------ee
Q 018394 88 RQVIAVS--KSSDIVLMVLDAS---KSEGHRQILTKELEAVGL------RLNKRPPQIYFKKKKTGGIS---------FN 147 (356)
Q Consensus 88 ~~~~~~~--~~~d~i~~v~d~~---~~~~~~~~i~~~L~~~~i------~l~~~~~~lS~g~~qr~~ia---------l~ 147 (356)
.|....+ ...+.+.+..... ........+.+.++.+++ .+++.+..||+|++||++++ ++
T Consensus 107 ~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LS~G~~qrl~laral~~~p~lll 186 (267)
T PRK14237 107 FQRPNPFAKSIYENITFALERAGVKDKKVLDEIVETSLKQAALWDQVKDDLHKSALTLSGGQQQRLCIARAIAVKPDILL 186 (267)
T ss_pred ecCCccccccHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCCchhhhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEE
Confidence 4433222 2244444332211 111223456777888876 35788899999999999988 99
Q ss_pred ecCCCCCCCHHHHHH---HHHHhcccCcEEEEccCCCHHHHHHHHhccccccceEEEeecCCC
Q 018394 148 STLPLTHVDEKLCYQ---ILHEYKIHNAEVLFREDATVDDLIDVIEGNRKYMKCVYVYNKIDV 207 (356)
Q Consensus 148 ~DEp~~~LD~~~~~~---il~~l~~~~~~i~~thd~~~~~~~~~i~~~~~~~p~i~v~NK~Dl 207 (356)
+||||++||+..... ++..+..+.++|++||+.....- .+..+++++..-+
T Consensus 187 LDEPt~~LD~~~~~~l~~~l~~~~~~~tiii~tH~~~~~~~---------~~d~i~~l~~G~i 240 (267)
T PRK14237 187 MDEPASALDPISTMQLEETMFELKKNYTIIIVTHNMQQAAR---------ASDYTAFFYLGDL 240 (267)
T ss_pred EeCCcccCCHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHH---------hcCEEEEEECCEE
Confidence 999999999987544 45555445689999999754311 2356777776544
No 229
>cd03299 ABC_ModC_like Archeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.81 E-value=1e-19 Score=166.73 Aligned_cols=156 Identities=17% Similarity=0.173 Sum_probs=113.2
Q ss_pred CCCCeEEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCccccccccccccceEEEECCEeecccCccccccccccCcccc
Q 018394 8 AGEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRG 87 (356)
Q Consensus 8 ~~~s~~v~~~~g~~v~LvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~~D~pGl~~~~~~~~~~~ 87 (356)
.+++|++.+ |++++|+|+|||||||||++|+|...+ ..|.+.++|.++.-.+. .....++.
T Consensus 16 ~~is~~i~~--Ge~~~i~G~nG~GKStLl~~l~G~~~p-----------~~G~v~i~g~~~~~~~~------~~~~i~~~ 76 (235)
T cd03299 16 KNVSLEVER--GDYFVILGPTGSGKSVLLETIAGFIKP-----------DSGKILLNGKDITNLPP------EKRDISYV 76 (235)
T ss_pred eeeEEEEcC--CcEEEEECCCCCCHHHHHHHHhCCcCC-----------CceEEEECCEEcCcCCh------hHcCEEEE
Confidence 588999999 889999999999999999999999866 78999999987643221 11233444
Q ss_pred ccccccccc---hhHHHHHHhcC--ChHHHHHHHHHHHHHccC--ccccccCcccccceecccee---------eeecCC
Q 018394 88 RQVIAVSKS---SDIVLMVLDAS--KSEGHRQILTKELEAVGL--RLNKRPPQIYFKKKKTGGIS---------FNSTLP 151 (356)
Q Consensus 88 ~~~~~~~~~---~d~i~~v~d~~--~~~~~~~~i~~~L~~~~i--~l~~~~~~lS~g~~qr~~ia---------l~~DEp 151 (356)
.+....+.. .+.+.+..... ......+.+.+.++.+++ .+++.+.+||+|++||++|+ +++|||
T Consensus 77 ~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEP 156 (235)
T cd03299 77 PQNYALFPHMTVYKNIAYGLKKRKVDKKEIERKVLEIAEMLGIDHLLNRKPETLSGGEQQRVAIARALVVNPKILLLDEP 156 (235)
T ss_pred eecCccCCCccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHHhcCcccCCHHHHHHHHHHHHHHcCCCEEEECCC
Confidence 443333322 34443322111 122233456788899998 67889999999999999998 999999
Q ss_pred CCCCCHHHHHHH---HHHhcc--cCcEEEEccCCCH
Q 018394 152 LTHVDEKLCYQI---LHEYKI--HNAEVLFREDATV 182 (356)
Q Consensus 152 ~~~LD~~~~~~i---l~~l~~--~~~~i~~thd~~~ 182 (356)
|++||......+ ++++.. +.+++++||+...
T Consensus 157 t~gLD~~~~~~l~~~l~~~~~~~~~tili~tH~~~~ 192 (235)
T cd03299 157 FSALDVRTKEKLREELKKIRKEFGVTVLHVTHDFEE 192 (235)
T ss_pred cccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHH
Confidence 999999986554 444433 4699999998754
No 230
>COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=99.81 E-value=7.2e-20 Score=162.74 Aligned_cols=160 Identities=20% Similarity=0.202 Sum_probs=117.8
Q ss_pred CCCCeEEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCccccccccccccceEEEECCEeecccCccccccccccCcccc
Q 018394 8 AGEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRG 87 (356)
Q Consensus 8 ~~~s~~v~~~~g~~v~LvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~~D~pGl~~~~~~~~~~~ 87 (356)
.++||++.+ |++++|+|+|||||||||++|+|...+ ..|+|.++|.+++-..+-. ....|++++
T Consensus 20 ~gvsl~v~~--Geiv~llG~NGaGKTTlLkti~Gl~~~-----------~~G~I~~~G~dit~~p~~~---r~r~Gi~~V 83 (237)
T COG0410 20 RGVSLEVER--GEIVALLGRNGAGKTTLLKTIMGLVRP-----------RSGRIIFDGEDITGLPPHE---RARLGIAYV 83 (237)
T ss_pred eeeeeEEcC--CCEEEEECCCCCCHHHHHHHHhCCCCC-----------CCeeEEECCeecCCCCHHH---HHhCCeEeC
Confidence 689999999 889999999999999999999999876 7899999999987654322 234566666
Q ss_pred ccccccccc---hhHHHHHHhcCChHH-HHHHHHHHHHHccC---ccccccCcccccceecccee---------eeecCC
Q 018394 88 RQVIAVSKS---SDIVLMVLDASKSEG-HRQILTKELEAVGL---RLNKRPPQIYFKKKKTGGIS---------FNSTLP 151 (356)
Q Consensus 88 ~~~~~~~~~---~d~i~~v~d~~~~~~-~~~~i~~~L~~~~i---~l~~~~~~lS~g~~qr~~ia---------l~~DEp 151 (356)
+|--..|.. .+++.+......... ....+++.++.|-. +.+++..+||+|++|.++|+ +++|||
T Consensus 84 PegR~iF~~LTVeENL~~g~~~~~~~~~~~~~~e~v~~lFP~Lker~~~~aG~LSGGEQQMLAiaRALm~~PklLLLDEP 163 (237)
T COG0410 84 PEGRRIFPRLTVEENLLLGAYARRDKEAQERDLEEVYELFPRLKERRNQRAGTLSGGEQQMLAIARALMSRPKLLLLDEP 163 (237)
T ss_pred cccccchhhCcHHHHHhhhhhcccccccccccHHHHHHHChhHHHHhcCcccCCChHHHHHHHHHHHHhcCCCEEEecCC
Confidence 655555554 455544333322211 12226666777653 68889999999999999998 999999
Q ss_pred CCCCCHHHHHHHHHH---hccc-C-cEEEEccCCCHH
Q 018394 152 LTHVDEKLCYQILHE---YKIH-N-AEVLFREDATVD 183 (356)
Q Consensus 152 ~~~LD~~~~~~il~~---l~~~-~-~~i~~thd~~~~ 183 (356)
+.+|-|.-+.++.+. ++.. . |++++.++...+
T Consensus 164 s~GLaP~iv~~I~~~i~~l~~~~g~tIlLVEQn~~~A 200 (237)
T COG0410 164 SEGLAPKIVEEIFEAIKELRKEGGMTILLVEQNARFA 200 (237)
T ss_pred ccCcCHHHHHHHHHHHHHHHHcCCcEEEEEeccHHHH
Confidence 999999887666554 4432 3 888888876543
No 231
>PRK14274 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.81 E-value=2e-19 Score=167.24 Aligned_cols=181 Identities=15% Similarity=0.112 Sum_probs=117.7
Q ss_pred CCCCeEEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCccccccccccccceEEEECCEeecccCccccccccccCcccc
Q 018394 8 AGEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRG 87 (356)
Q Consensus 8 ~~~s~~v~~~~g~~v~LvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~~D~pGl~~~~~~~~~~~ 87 (356)
.+++|++.+ |++++|+|+||||||||+++|+|...+. | .-+..|.+.++|.++...+.. . ......+++.
T Consensus 29 ~~vs~~i~~--Ge~~~l~G~nGsGKSTLl~~l~G~~~~~---p---~~~~~G~i~~~g~~~~~~~~~-~-~~~~~~i~~v 98 (259)
T PRK14274 29 KNINLSIPE--NEVTAIIGPSGCGKSTFIKTLNLMIQMV---P---NVKLTGEMNYNGSNILKGKVD-L-VELRKNIGMV 98 (259)
T ss_pred EeeEEEEcC--CCEEEEECCCCCCHHHHHHHHHhhccCC---C---CCCCceEEEECCEEccccccC-H-HHHhhceEEE
Confidence 588999999 8899999999999999999999986420 0 001479999999876421111 0 0111233444
Q ss_pred cccccccc--chhHHHHHHhcCC---hHHHHHHHHHHHHHccC------ccccccCcccccceecccee---------ee
Q 018394 88 RQVIAVSK--SSDIVLMVLDASK---SEGHRQILTKELEAVGL------RLNKRPPQIYFKKKKTGGIS---------FN 147 (356)
Q Consensus 88 ~~~~~~~~--~~d~i~~v~d~~~---~~~~~~~i~~~L~~~~i------~l~~~~~~lS~g~~qr~~ia---------l~ 147 (356)
.|....+. ..+.+.+...... .....+.+.+.++.+++ .+++.+..||+||+||+.++ ++
T Consensus 99 ~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~l~~~~~~LS~Gq~qrv~laral~~~p~lll 178 (259)
T PRK14274 99 FQKGNPFPQSIFDNVAYGPRIHGTKNKKKLQEIVEKSLKDVALWDEVKDRLHTQALSLSGGQQQRLCIARALATNPDVLL 178 (259)
T ss_pred ecCCcccccCHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhhhhhCCcccCCHHHHHHHHHHHHHhcCCCEEE
Confidence 44332222 2344433222111 12223446677888776 25778899999999999988 99
Q ss_pred ecCCCCCCCHHHHHH---HHHHhcccCcEEEEccCCCHHHHHHHHhccccccceEEEeecCCC
Q 018394 148 STLPLTHVDEKLCYQ---ILHEYKIHNAEVLFREDATVDDLIDVIEGNRKYMKCVYVYNKIDV 207 (356)
Q Consensus 148 ~DEp~~~LD~~~~~~---il~~l~~~~~~i~~thd~~~~~~~~~i~~~~~~~p~i~v~NK~Dl 207 (356)
+||||++||+..... ++.++....+++++||+.....- .+..+++++..-+
T Consensus 179 lDEPt~~LD~~~~~~l~~~l~~~~~~~tiiivtH~~~~~~~---------~~d~i~~l~~G~i 232 (259)
T PRK14274 179 MDEPTSALDPVSTRKIEELILKLKEKYTIVIVTHNMQQAAR---------VSDQTAFFYMGEL 232 (259)
T ss_pred EcCCcccCCHHHHHHHHHHHHHHhcCCEEEEEEcCHHHHHH---------hCCEEEEEECCEE
Confidence 999999999987544 45555445699999999754221 2356666665433
No 232
>PRK14256 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.81 E-value=2.9e-19 Score=165.43 Aligned_cols=163 Identities=18% Similarity=0.196 Sum_probs=110.8
Q ss_pred CCCCeEEEecCCcEEEEEcCCCCcHHHHHHHHHcCCC--CccccccccccccceEEEECCEeecccCccccccccccCcc
Q 018394 8 AGEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHS--EAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKG 85 (356)
Q Consensus 8 ~~~s~~v~~~~g~~v~LvG~~gaGKSTLln~L~g~~~--~vs~~p~TT~~~~~G~i~~~g~~i~~~D~pGl~~~~~~~~~ 85 (356)
.++||++.+ |+.++|+|+||||||||+++|+|... +. .|..|.+.++|.++...+. ... .....++
T Consensus 21 ~~isl~i~~--Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~--------~~~~G~v~~~g~~i~~~~~-~~~-~~~~~i~ 88 (252)
T PRK14256 21 KDVSMDFPE--NSVTAIIGPSGCGKSTVLRSINRMHDLVPS--------ARVTGKILLDDTDIYDRGV-DPV-SIRRRVG 88 (252)
T ss_pred ecceEEEcC--CCEEEEECCCCCCHHHHHHHHHhcccCCCC--------CCCceEEEECCEEcccccC-ChH-HhhccEE
Confidence 688999999 88999999999999999999999864 20 0257999999987643211 000 1112234
Q ss_pred ccccccccccc---hhHHHHHHhcC---ChHHHHHHHHHHHHHccC------ccccccCcccccceecccee--------
Q 018394 86 RGRQVIAVSKS---SDIVLMVLDAS---KSEGHRQILTKELEAVGL------RLNKRPPQIYFKKKKTGGIS-------- 145 (356)
Q Consensus 86 ~~~~~~~~~~~---~d~i~~v~d~~---~~~~~~~~i~~~L~~~~i------~l~~~~~~lS~g~~qr~~ia-------- 145 (356)
+..|....+.. .+.+.+..... ......+.+.+.++.+++ .+++.+..||+||+||++++
T Consensus 89 ~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrl~laral~~~p~ 168 (252)
T PRK14256 89 MVFQKPNPFPAMSIYDNVIAGYKLNGRVNRSEADEIVESSLKRVALWDEVKDRLKSNAMELSGGQQQRLCIARTIAVKPE 168 (252)
T ss_pred EEecCCCCCCcCcHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhHHhhCCcCcCCHHHHHHHHHHHHHhcCCC
Confidence 44443333332 34443322211 112223456777888886 24677899999999999988
Q ss_pred -eeecCCCCCCCHHHHHH---HHHHhcccCcEEEEccCCCH
Q 018394 146 -FNSTLPLTHVDEKLCYQ---ILHEYKIHNAEVLFREDATV 182 (356)
Q Consensus 146 -l~~DEp~~~LD~~~~~~---il~~l~~~~~~i~~thd~~~ 182 (356)
+++||||++||+..... +++++....++|++||+...
T Consensus 169 llllDEP~~gLD~~~~~~l~~~l~~~~~~~tiiivsH~~~~ 209 (252)
T PRK14256 169 VILMDEPASALDPISTLKIEELIEELKEKYTIIIVTHNMQQ 209 (252)
T ss_pred EEEEcCCcccCCHHHHHHHHHHHHHHHhCCcEEEEECCHHH
Confidence 99999999999987554 44455445699999999754
No 233
>PRK14251 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.81 E-value=2.9e-19 Score=165.29 Aligned_cols=165 Identities=19% Similarity=0.171 Sum_probs=109.9
Q ss_pred CCCCeEEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCccccccccccccceEEEECCEeecccCccccccccccCcccc
Q 018394 8 AGEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRG 87 (356)
Q Consensus 8 ~~~s~~v~~~~g~~v~LvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~~D~pGl~~~~~~~~~~~ 87 (356)
.+++|++.+ |++++|+|+||||||||+++|+|...+ +| ..|..|.+.++|.++...+ .... .....++..
T Consensus 21 ~~~sl~i~~--Ge~~~i~G~nGsGKSTLl~~l~Gl~~~---~p---~~~~~G~v~i~g~~~~~~~-~~~~-~~~~~i~~~ 90 (251)
T PRK14251 21 HGISLDFEE--KELTALIGPSGCGKSTFLRCLNRMNDD---IE---NIKITGEIKFEGQNIYGSK-MDLV-ELRKEVGMV 90 (251)
T ss_pred eeeeEEEcC--CCEEEEECCCCCCHHHHHHHHhhcccc---cc---CCCcceEEEECCEEccccc-chHH-HhhccEEEE
Confidence 588999999 889999999999999999999998741 00 0125899999998764211 0100 011223333
Q ss_pred ccccccc--cchhHHHHHHhcC---ChHHHHHHHHHHHHHccC------ccccccCcccccceecccee---------ee
Q 018394 88 RQVIAVS--KSSDIVLMVLDAS---KSEGHRQILTKELEAVGL------RLNKRPPQIYFKKKKTGGIS---------FN 147 (356)
Q Consensus 88 ~~~~~~~--~~~d~i~~v~d~~---~~~~~~~~i~~~L~~~~i------~l~~~~~~lS~g~~qr~~ia---------l~ 147 (356)
.|....+ ...+.+.+..... ........+.+.++.+++ .+++.+..||+||+||++++ ++
T Consensus 91 ~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qr~~laral~~~p~lll 170 (251)
T PRK14251 91 FQQPTPFPFSVYDNVAYGLKIAGVKDKELIDQRVEESLKQAAIWKETKDNLDRNAQAFSGGQQQRICIARALAVRPKVVL 170 (251)
T ss_pred ecCCccCCCcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCCcchHHHhccChhhCCHHHHHHHHHHHHHhcCCCEEE
Confidence 3332222 2345444332211 111223456677888777 25778899999999999988 99
Q ss_pred ecCCCCCCCHHHHHHH---HHHhcccCcEEEEccCCCH
Q 018394 148 STLPLTHVDEKLCYQI---LHEYKIHNAEVLFREDATV 182 (356)
Q Consensus 148 ~DEp~~~LD~~~~~~i---l~~l~~~~~~i~~thd~~~ 182 (356)
+||||++||+.....+ ++.+....+++++||+...
T Consensus 171 lDEP~~~LD~~~~~~l~~~l~~~~~~~tiiiisH~~~~ 208 (251)
T PRK14251 171 LDEPTSALDPISSSEIEETLMELKHQYTFIMVTHNLQQ 208 (251)
T ss_pred ecCCCccCCHHHHHHHHHHHHHHHcCCeEEEEECCHHH
Confidence 9999999999885544 4444345699999999754
No 234
>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed
Probab=99.81 E-value=1.2e-19 Score=167.88 Aligned_cols=146 Identities=14% Similarity=0.155 Sum_probs=102.2
Q ss_pred CCCCeEEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCccccccccccccceEEEECCEeecccCccccccccccCcccc
Q 018394 8 AGEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRG 87 (356)
Q Consensus 8 ~~~s~~v~~~~g~~v~LvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~~D~pGl~~~~~~~~~~~ 87 (356)
.+++|++.+ |++++|+|+|||||||||++|+|...+ ..|.+.+++.. ..++.
T Consensus 21 ~~vs~~i~~--Ge~~~I~G~NGsGKSTLl~~i~Gl~~p-----------~~G~i~~~~~~-----~i~~v---------- 72 (251)
T PRK09544 21 SDVSLELKP--GKILTLLGPNGAGKSTLVRVVLGLVAP-----------DEGVIKRNGKL-----RIGYV---------- 72 (251)
T ss_pred EeEEEEEcC--CcEEEEECCCCCCHHHHHHHHhCCCCC-----------CceEEEECCcc-----CEEEe----------
Confidence 578999999 889999999999999999999999866 78999987631 01111
Q ss_pred ccccccccc--hhHHHHHHhcCChHHHHHHHHHHHHHccC--ccccccCcccccceecccee---------eeecCCCCC
Q 018394 88 RQVIAVSKS--SDIVLMVLDASKSEGHRQILTKELEAVGL--RLNKRPPQIYFKKKKTGGIS---------FNSTLPLTH 154 (356)
Q Consensus 88 ~~~~~~~~~--~d~i~~v~d~~~~~~~~~~i~~~L~~~~i--~l~~~~~~lS~g~~qr~~ia---------l~~DEp~~~ 154 (356)
.|....... ..+..++. ... ....+.+.+.++.+++ .+++++..||+||+||++++ +++||||++
T Consensus 73 ~q~~~~~~~l~~~~~~~~~-~~~-~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qrv~laral~~~p~lllLDEPt~~ 150 (251)
T PRK09544 73 PQKLYLDTTLPLTVNRFLR-LRP-GTKKEDILPALKRVQAGHLIDAPMQKLSGGETQRVLLARALLNRPQLLVLDEPTQG 150 (251)
T ss_pred ccccccccccChhHHHHHh-ccc-cccHHHHHHHHHHcCChHHHhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcC
Confidence 111100010 01111111 111 1112456778889998 67888999999999999988 999999999
Q ss_pred CCHHHHHHH---HHHhcc--cCcEEEEccCCCHH
Q 018394 155 VDEKLCYQI---LHEYKI--HNAEVLFREDATVD 183 (356)
Q Consensus 155 LD~~~~~~i---l~~l~~--~~~~i~~thd~~~~ 183 (356)
||+.....+ |.++.. +.++|++||+.+..
T Consensus 151 LD~~~~~~l~~~L~~~~~~~g~tiiivsH~~~~i 184 (251)
T PRK09544 151 VDVNGQVALYDLIDQLRRELDCAVLMVSHDLHLV 184 (251)
T ss_pred CCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHH
Confidence 999885554 444432 45899999997643
No 235
>COG4161 ArtP ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.81 E-value=1.2e-19 Score=152.53 Aligned_cols=165 Identities=15% Similarity=0.152 Sum_probs=126.8
Q ss_pred CCCCeEEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCccccccccccccceEEEECCEeecccCccccc--cccccCcc
Q 018394 8 AGEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGII--EGASEGKG 85 (356)
Q Consensus 8 ~~~s~~v~~~~g~~v~LvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~~D~pGl~--~~~~~~~~ 85 (356)
-+++|+.+. |+.++|+||+|+|||||++.|.-+..| .+|.+.+.|..+.+-.+|+-. .......|
T Consensus 19 fdi~l~~~~--getlvllgpsgagkssllr~lnlle~p-----------~sg~l~ia~~~fd~s~~~~~k~i~~lr~~vg 85 (242)
T COG4161 19 FDITLDCPE--GETLVLLGPSGAGKSSLLRVLNLLEMP-----------RSGTLNIAGNHFDFSKTPSDKAIRDLRRNVG 85 (242)
T ss_pred eeeeecCCC--CCEEEEECCCCCchHHHHHHHHHHhCC-----------CCCeEEecccccccccCccHHHHHHHHHhhh
Confidence 367777777 889999999999999999999988877 789999999888777766531 12234567
Q ss_pred ccccccccccchhHHHHHHhc------CChHHHHHHHHHHHHHccC--ccccccCcccccceecccee---------eee
Q 018394 86 RGRQVIAVSKSSDIVLMVLDA------SKSEGHRQILTKELEAVGL--RLNKRPPQIYFKKKKTGGIS---------FNS 148 (356)
Q Consensus 86 ~~~~~~~~~~~~d~i~~v~d~------~~~~~~~~~i~~~L~~~~i--~l~~~~~~lS~g~~qr~~ia---------l~~ 148 (356)
+++|....-+...++...+.+ ....+......++|.++.+ +.++.|-.||+|++||++|| ++.
T Consensus 86 mvfqqy~lwphltv~enlieap~kv~gl~~~qa~~~a~ellkrlrl~~~adr~plhlsggqqqrvaiaralmmkpqvllf 165 (242)
T COG4161 86 MVFQQYNLWPHLTVQENLIEAPCRVLGLSKDQALARAEKLLKRLRLKPYADRYPLHLSGGQQQRVAIARALMMEPQVLLF 165 (242)
T ss_pred hhhhhhccCchhHHHHHHHhhhHHHhCCCHHHHHHHHHHHHHHhccccccccCceecccchhhhHHHHHHHhcCCcEEee
Confidence 777766555666666555443 2233445667888999888 78999999999999999998 888
Q ss_pred cCCCCCCCHHH---HHHHHHHhcc-cCcEEEEccCCCHHHH
Q 018394 149 TLPLTHVDEKL---CYQILHEYKI-HNAEVLFREDATVDDL 185 (356)
Q Consensus 149 DEp~~~LD~~~---~~~il~~l~~-~~~~i~~thd~~~~~~ 185 (356)
||||+.||++. +-.+++++.. +-+-+++||.++.+.-
T Consensus 166 deptaaldpeitaqvv~iikel~~tgitqvivthev~va~k 206 (242)
T COG4161 166 DEPTAALDPEITAQIVSIIKELAETGITQVIVTHEVEVARK 206 (242)
T ss_pred cCcccccCHHHHHHHHHHHHHHHhcCceEEEEEeehhHHHh
Confidence 99999999987 4456666653 4488999999877653
No 236
>PRK14254 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.81 E-value=1.9e-19 Score=169.68 Aligned_cols=166 Identities=14% Similarity=0.120 Sum_probs=112.2
Q ss_pred CCCCeEEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCccccccccccccceEEEECCEeecccCccccccccccCcccc
Q 018394 8 AGEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRG 87 (356)
Q Consensus 8 ~~~s~~v~~~~g~~v~LvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~~D~pGl~~~~~~~~~~~ 87 (356)
++++|++.+ |++++|+|+|||||||||++|+|...+. +..|..|.|.++|.++...+... .......++.
T Consensus 56 ~~is~~i~~--Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~------~~~p~~G~I~i~G~~i~~~~~~~--~~~~~~i~~v 125 (285)
T PRK14254 56 DDVSMDIPE--NQVTAMIGPSGCGKSTFLRCINRMNDLI------DAARVEGELTFRGKNVYDADVDP--VALRRRIGMV 125 (285)
T ss_pred eeeEEEEcC--CCEEEEECCCCCCHHHHHHHHhccCCcc------cCCCCceEEEECCEEccccccch--HhhhccEEEE
Confidence 588999999 8899999999999999999999997420 00126899999998764221100 0011223344
Q ss_pred cccccccc--chhHHHHHHhcCC-hHHHHHHHHHHHHHccC------ccccccCcccccceecccee---------eeec
Q 018394 88 RQVIAVSK--SSDIVLMVLDASK-SEGHRQILTKELEAVGL------RLNKRPPQIYFKKKKTGGIS---------FNST 149 (356)
Q Consensus 88 ~~~~~~~~--~~d~i~~v~d~~~-~~~~~~~i~~~L~~~~i------~l~~~~~~lS~g~~qr~~ia---------l~~D 149 (356)
.|....+. ..+.+.+...... .....+.+.+.++.+++ .+++++..||+||+||++|| +++|
T Consensus 126 ~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LSgGe~qrv~LAraL~~~p~lLLLD 205 (285)
T PRK14254 126 FQKPNPFPKSIYDNVAYGLKIQGYDGDIDERVEESLRRAALWDEVKDQLDSSGLDLSGGQQQRLCIARAIAPDPEVILMD 205 (285)
T ss_pred ecCCccCcCCHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCCCchhHHHHhCCcccCCHHHHHHHHHHHHHHcCCCEEEEe
Confidence 44332222 2344433322111 11233457788888876 35788899999999999998 9999
Q ss_pred CCCCCCCHHHHHH---HHHHhcccCcEEEEccCCCHH
Q 018394 150 LPLTHVDEKLCYQ---ILHEYKIHNAEVLFREDATVD 183 (356)
Q Consensus 150 Ep~~~LD~~~~~~---il~~l~~~~~~i~~thd~~~~ 183 (356)
|||++||...... +|+.+....++|++||+....
T Consensus 206 EPts~LD~~~~~~l~~~L~~~~~~~tiii~tH~~~~i 242 (285)
T PRK14254 206 EPASALDPVATSKIEDLIEELAEEYTVVIVTHNMQQA 242 (285)
T ss_pred CCCCCCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHH
Confidence 9999999987554 444544446899999997643
No 237
>PRK14239 phosphate transporter ATP-binding protein; Provisional
Probab=99.81 E-value=3.1e-19 Score=165.13 Aligned_cols=179 Identities=18% Similarity=0.110 Sum_probs=117.3
Q ss_pred CCCCeEEEecCCcEEEEEcCCCCcHHHHHHHHHcCCC--CccccccccccccceEEEECCEeecccCccccccccccCcc
Q 018394 8 AGEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHS--EAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKG 85 (356)
Q Consensus 8 ~~~s~~v~~~~g~~v~LvG~~gaGKSTLln~L~g~~~--~vs~~p~TT~~~~~G~i~~~g~~i~~~D~pGl~~~~~~~~~ 85 (356)
.+++|++.+ |++++|+|+||||||||+++|+|... |. .+..|.|.++|.++.-.+.. . ......++
T Consensus 22 ~~~s~~i~~--Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~--------~~~~G~i~~~g~~~~~~~~~-~-~~~~~~i~ 89 (252)
T PRK14239 22 NSVSLDFYP--NEITALIGPSGSGKSTLLRSINRMNDLNPE--------VTITGSIVYNGHNIYSPRTD-T-VDLRKEIG 89 (252)
T ss_pred eeeeEEEcC--CcEEEEECCCCCCHHHHHHHHhcccccCCC--------CCccceEEECCEECcCcccc-h-HhhhhcEE
Confidence 688999999 88999999999999999999999843 20 01379999999876321110 0 00112233
Q ss_pred ccccccccc--cchhHHHHHHhcCC---hHHHHHHHHHHHHHccC------ccccccCcccccceecccee---------
Q 018394 86 RGRQVIAVS--KSSDIVLMVLDASK---SEGHRQILTKELEAVGL------RLNKRPPQIYFKKKKTGGIS--------- 145 (356)
Q Consensus 86 ~~~~~~~~~--~~~d~i~~v~d~~~---~~~~~~~i~~~L~~~~i------~l~~~~~~lS~g~~qr~~ia--------- 145 (356)
+..|....+ ...+.+.+...... .....+.+.+.++.+++ .+++.+.+||+|++||+++|
T Consensus 90 ~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~l 169 (252)
T PRK14239 90 MVFQQPNPFPMSIYENVVYGLRLKGIKDKQVLDEAVEKSLKGASIWDEVKDRLHDSALGLSGGQQQRVCIARVLATSPKI 169 (252)
T ss_pred EEecCCccCcCcHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCchhHHHHHhcCcccCCHHHHHHHHHHHHHhcCCCE
Confidence 434433222 23454443322111 11223456677888775 35778899999999999988
Q ss_pred eeecCCCCCCCHHHHHHH---HHHhcccCcEEEEccCCCHHHHHHHHhccccccceEEEeecCCC
Q 018394 146 FNSTLPLTHVDEKLCYQI---LHEYKIHNAEVLFREDATVDDLIDVIEGNRKYMKCVYVYNKIDV 207 (356)
Q Consensus 146 l~~DEp~~~LD~~~~~~i---l~~l~~~~~~i~~thd~~~~~~~~~i~~~~~~~p~i~v~NK~Dl 207 (356)
+++||||++||+.....+ |+++....+++++||+.+.... .+..+++++..-+
T Consensus 170 lllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~---------~~d~i~~l~~G~i 225 (252)
T PRK14239 170 ILLDEPTSALDPISAGKIEETLLGLKDDYTMLLVTRSMQQASR---------ISDRTGFFLDGDL 225 (252)
T ss_pred EEEcCCccccCHHHHHHHHHHHHHHhhCCeEEEEECCHHHHHH---------hCCEEEEEECCEE
Confidence 999999999999885544 4444444689999999753211 2356777766543
No 238
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=99.81 E-value=1.8e-19 Score=182.56 Aligned_cols=162 Identities=16% Similarity=0.128 Sum_probs=112.8
Q ss_pred CCCCeEEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCccccccccccccceEEEECCEeecccCccccccccccCcccc
Q 018394 8 AGEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRG 87 (356)
Q Consensus 8 ~~~s~~v~~~~g~~v~LvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~~D~pGl~~~~~~~~~~~ 87 (356)
.++||++.+ |++++|+|+||||||||+++|+|...+ +|.+|.|.++|.++...+.... ....+++.
T Consensus 18 ~~isl~i~~--Ge~~~liG~nGsGKSTLl~~i~G~~~~---------~~~~G~i~~~g~~~~~~~~~~~---~~~~i~~v 83 (500)
T TIGR02633 18 DGIDLEVRP--GECVGLCGENGAGKSTLMKILSGVYPH---------GTWDGEIYWSGSPLKASNIRDT---ERAGIVII 83 (500)
T ss_pred cceEEEEeC--CcEEEEECCCCCCHHHHHHHHhCCCCC---------CCCCeEEEECCEECCCCCHHHH---HhCCEEEE
Confidence 689999999 889999999999999999999998743 1258999999987753221110 11234444
Q ss_pred cccccccc---chhHHHHHHhc------CChHHHHHHHHHHHHHccC--cc-ccccCcccccceecccee---------e
Q 018394 88 RQVIAVSK---SSDIVLMVLDA------SKSEGHRQILTKELEAVGL--RL-NKRPPQIYFKKKKTGGIS---------F 146 (356)
Q Consensus 88 ~~~~~~~~---~~d~i~~v~d~------~~~~~~~~~i~~~L~~~~i--~l-~~~~~~lS~g~~qr~~ia---------l 146 (356)
.|....+. ..+.+.+.... .......+.+.++|+.+++ .. ++++.+||+||+||+.|| +
T Consensus 84 ~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~iA~al~~~p~ll 163 (500)
T TIGR02633 84 HQELTLVPELSVAENIFLGNEITLPGGRMAYNAMYLRAKNLLRELQLDADNVTRPVGDYGGGQQQLVEIAKALNKQARLL 163 (500)
T ss_pred eeccccCCCCcHHHHHHhhccccccccccCHHHHHHHHHHHHHHcCCCCCcccCchhhCCHHHHHHHHHHHHHhhCCCEE
Confidence 44433222 23444332111 1112234567888999998 33 567899999999999998 9
Q ss_pred eecCCCCCCCHHHHHHH---HHHhcc-cCcEEEEccCCCHH
Q 018394 147 NSTLPLTHVDEKLCYQI---LHEYKI-HNAEVLFREDATVD 183 (356)
Q Consensus 147 ~~DEp~~~LD~~~~~~i---l~~l~~-~~~~i~~thd~~~~ 183 (356)
++||||++||+.....+ |+.+.. +.++|++|||....
T Consensus 164 lLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviiitHd~~~~ 204 (500)
T TIGR02633 164 ILDEPSSSLTEKETEILLDIIRDLKAHGVACVYISHKLNEV 204 (500)
T ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCcHHHH
Confidence 99999999999986555 444433 45899999997643
No 239
>COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=99.81 E-value=1.4e-19 Score=177.26 Aligned_cols=172 Identities=20% Similarity=0.208 Sum_probs=121.9
Q ss_pred CCCCeEEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCccccccccccccceEEEECCEeecccCccccccccccCcccc
Q 018394 8 AGEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRG 87 (356)
Q Consensus 8 ~~~s~~v~~~~g~~v~LvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~~D~pGl~~~~~~~~~~~ 87 (356)
+++||++.. |++|||+|++|||||||+..|+|...+ ++|++.++|.++..+|...+++ .+...
T Consensus 355 ~~~~l~l~~--GEkvAIlG~SGsGKSTllqLl~~~~~~-----------~~G~i~~~g~~~~~l~~~~~~e----~i~vl 417 (573)
T COG4987 355 KNFNLTLAQ--GEKVAILGRSGSGKSTLLQLLAGAWDP-----------QQGSITLNGVEIASLDEQALRE----TISVL 417 (573)
T ss_pred hccceeecC--CCeEEEECCCCCCHHHHHHHHHhccCC-----------CCCeeeECCcChhhCChhhHHH----HHhhh
Confidence 689999999 889999999999999999999999866 8999999999988777543332 12222
Q ss_pred ccccccccc--hhHHHHHHhcCChHHHHHHHHHHHHHccC-------------ccccccCcccccceecccee-------
Q 018394 88 RQVIAVSKS--SDIVLMVLDASKSEGHRQILTKELEAVGL-------------RLNKRPPQIYFKKKKTGGIS------- 145 (356)
Q Consensus 88 ~~~~~~~~~--~d~i~~v~d~~~~~~~~~~i~~~L~~~~i-------------~l~~~~~~lS~g~~qr~~ia------- 145 (356)
+|....+.. .|++.+ + ++....+.+.+.|+.+|+ ++...-..||||++||++||
T Consensus 418 ~Qr~hlF~~Tlr~NL~l---A-~~~AsDEel~~aL~qvgL~~l~~~~p~gl~t~lge~G~~LSGGE~rRLAlAR~LL~da 493 (573)
T COG4987 418 TQRVHLFSGTLRDNLRL---A-NPDASDEELWAALQQVGLEKLLESAPDGLNTWLGEGGRRLSGGERRRLALARALLHDA 493 (573)
T ss_pred ccchHHHHHHHHHHHhh---c-CCCCCHHHHHHHHHHcCHHHHHHhChhhhhchhccCCCcCCchHHHHHHHHHHHHcCC
Confidence 332222221 122211 1 122222345555666555 23334467999999999999
Q ss_pred --eeecCCCCCCCHHHHHHHHHHhc---ccCcEEEEccCCCHHHHHHHHhccccccceEEEeecCCCCCh
Q 018394 146 --FNSTLPLTHVDEKLCYQILHEYK---IHNAEVLFREDATVDDLIDVIEGNRKYMKCVYVYNKIDVIGI 210 (356)
Q Consensus 146 --l~~DEp~~~LD~~~~~~il~~l~---~~~~~i~~thd~~~~~~~~~i~~~~~~~p~i~v~NK~Dl~~~ 210 (356)
+++||||.+||+.+-.++|..+. .++|++++||+....+. ++.|+|++..-+..+
T Consensus 494 pl~lLDEPTegLD~~TE~~vL~ll~~~~~~kTll~vTHrL~~le~----------~drIivl~~Gkiie~ 553 (573)
T COG4987 494 PLWLLDEPTEGLDPITERQVLALLFEHAEGKTLLMVTHRLRGLER----------MDRIIVLDNGKIIEE 553 (573)
T ss_pred CeEEecCCcccCChhhHHHHHHHHHHHhcCCeEEEEecccccHhh----------cCEEEEEECCeeeec
Confidence 89999999999999888777665 46799999999876554 467788776655433
No 240
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=99.81 E-value=1.8e-19 Score=183.74 Aligned_cols=174 Identities=18% Similarity=0.159 Sum_probs=119.4
Q ss_pred CCCCeEEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCccccccccccccceEEEECCEeecccCccccccccccCcccc
Q 018394 8 AGEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRG 87 (356)
Q Consensus 8 ~~~s~~v~~~~g~~v~LvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~~D~pGl~~~~~~~~~~~ 87 (356)
.++||++.+ |++++|+|+||||||||+++|+|.. + .+|.|.++|.++...+...+. .....+++.
T Consensus 303 ~~isl~i~~--Ge~~~i~G~nGsGKSTLlk~l~Gl~-~-----------~~G~i~~~g~~i~~~~~~~~~-~~~~~i~~v 367 (529)
T PRK15134 303 KNISFTLRP--GETLGLVGESGSGKSTTGLALLRLI-N-----------SQGEIWFDGQPLHNLNRRQLL-PVRHRIQVV 367 (529)
T ss_pred ecceeEEcC--CCEEEEECCCCCCHHHHHHHHhCcC-C-----------CCcEEEECCEEccccchhhHH-HhhhceEEE
Confidence 589999999 8899999999999999999999986 3 479999999877533221110 011234444
Q ss_pred cccc--ccc---cchhHHHHHHhcC----ChHHHHHHHHHHHHHccC---ccccccCcccccceecccee---------e
Q 018394 88 RQVI--AVS---KSSDIVLMVLDAS----KSEGHRQILTKELEAVGL---RLNKRPPQIYFKKKKTGGIS---------F 146 (356)
Q Consensus 88 ~~~~--~~~---~~~d~i~~v~d~~----~~~~~~~~i~~~L~~~~i---~l~~~~~~lS~g~~qr~~ia---------l 146 (356)
.|.. ..+ ...+.+.+..... ......+.+.+.|+.+++ ..++++.+||+||+||+.|| +
T Consensus 368 ~q~~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~la~al~~~p~ll 447 (529)
T PRK15134 368 FQDPNSSLNPRLNVLQIIEEGLRVHQPTLSAAQREQQVIAVMEEVGLDPETRHRYPAEFSGGQRQRIAIARALILKPSLI 447 (529)
T ss_pred EeCchhhcCCcccHHHHHHHHHHhccccCChHHHHHHHHHHHHHcCCCHHHHhcCCccCCHHHHHHHHHHHHHhCCCCEE
Confidence 4432 122 2244443322111 122234567888999998 36888999999999999998 9
Q ss_pred eecCCCCCCCHHHHHHH---HHHhcc--cCcEEEEccCCCHHHHHHHHhccccccceEEEeecC
Q 018394 147 NSTLPLTHVDEKLCYQI---LHEYKI--HNAEVLFREDATVDDLIDVIEGNRKYMKCVYVYNKI 205 (356)
Q Consensus 147 ~~DEp~~~LD~~~~~~i---l~~l~~--~~~~i~~thd~~~~~~~~~i~~~~~~~p~i~v~NK~ 205 (356)
++||||++||+.....+ ++.+.. +.++|++|||...... .+..+++++..
T Consensus 448 llDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~vsHd~~~~~~---------~~d~i~~l~~G 502 (529)
T PRK15134 448 ILDEPTSSLDKTVQAQILALLKSLQQKHQLAYLFISHDLHVVRA---------LCHQVIVLRQG 502 (529)
T ss_pred EeeCCccccCHHHHHHHHHHHHHHHHhhCCEEEEEeCCHHHHHH---------hcCeEEEEECC
Confidence 99999999999985554 444432 4589999999764321 23556666544
No 241
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=99.81 E-value=2.4e-19 Score=181.77 Aligned_cols=160 Identities=11% Similarity=0.147 Sum_probs=112.8
Q ss_pred CCCCeEEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCccccccccccccceEEEECCEeecccCccccccccccCcccc
Q 018394 8 AGEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRG 87 (356)
Q Consensus 8 ~~~s~~v~~~~g~~v~LvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~~D~pGl~~~~~~~~~~~ 87 (356)
+++||++.+ |++++|+|+||||||||+++|+|...| ..|.|.++|.++.-.+.. ......+++.
T Consensus 269 ~~vsl~i~~--Ge~~~liG~NGsGKSTLl~~l~G~~~p-----------~~G~I~~~g~~i~~~~~~---~~~~~~i~~v 332 (501)
T PRK10762 269 NDVSFTLRK--GEILGVSGLMGAGRTELMKVLYGALPR-----------TSGYVTLDGHEVVTRSPQ---DGLANGIVYI 332 (501)
T ss_pred ccceEEEcC--CcEEEEecCCCCCHHHHHHHHhCCCCC-----------CceEEEECCEECCCCCHH---HHHHCCCEEe
Confidence 688999999 889999999999999999999999866 789999999876432210 0111234444
Q ss_pred cccc---cccc---chhHHHHHH-hc-------CChHHHHHHHHHHHHHccC---ccccccCcccccceecccee-----
Q 018394 88 RQVI---AVSK---SSDIVLMVL-DA-------SKSEGHRQILTKELEAVGL---RLNKRPPQIYFKKKKTGGIS----- 145 (356)
Q Consensus 88 ~~~~---~~~~---~~d~i~~v~-d~-------~~~~~~~~~i~~~L~~~~i---~l~~~~~~lS~g~~qr~~ia----- 145 (356)
.|.. ..+. ..+.+.+.. .. .......+.+.++|+.+++ ..++++..||+||+||+.||
T Consensus 333 ~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGekqrv~lA~al~~ 412 (501)
T PRK10762 333 SEDRKRDGLVLGMSVKENMSLTALRYFSRAGGSLKHADEQQAVSDFIRLFNIKTPSMEQAIGLLSGGNQQKVAIARGLMT 412 (501)
T ss_pred cCccccCCCcCCCcHHHHhhhhhhhhhcccccccCHHHHHHHHHHHHHhcCCCCCCccCchhhCCHHHHHHHHHHHHHhh
Confidence 4432 1122 233333211 00 0112234567888999988 36888999999999999998
Q ss_pred ----eeecCCCCCCCHHHHHH---HHHHhc-ccCcEEEEccCCCHH
Q 018394 146 ----FNSTLPLTHVDEKLCYQ---ILHEYK-IHNAEVLFREDATVD 183 (356)
Q Consensus 146 ----l~~DEp~~~LD~~~~~~---il~~l~-~~~~~i~~thd~~~~ 183 (356)
+++||||++||+..... +++.+. .+.++|++|||....
T Consensus 413 ~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tviivtHd~~~~ 458 (501)
T PRK10762 413 RPKVLILDEPTRGVDVGAKKEIYQLINQFKAEGLSIILVSSEMPEV 458 (501)
T ss_pred CCCEEEEcCCCCCCCHhHHHHHHHHHHHHHHCCCEEEEEcCCHHHH
Confidence 99999999999988544 455544 345899999997643
No 242
>PRK14275 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.81 E-value=2.7e-19 Score=168.70 Aligned_cols=179 Identities=14% Similarity=0.072 Sum_probs=116.4
Q ss_pred CCCCeEEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCccccccccccccceEEEECCEeecccCccccccccccCcccc
Q 018394 8 AGEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRG 87 (356)
Q Consensus 8 ~~~s~~v~~~~g~~v~LvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~~D~pGl~~~~~~~~~~~ 87 (356)
.+++|++.+ |++++|+|+|||||||||++|+|..... | ..|..|.|.++|.++...... . ......+++.
T Consensus 56 ~~vsl~i~~--Ge~~~l~G~nGsGKSTLl~~L~Gl~~~~---p---~~~~~G~I~~~g~~i~~~~~~-~-~~~~~~i~~v 125 (286)
T PRK14275 56 KKVNADILS--KYVTAIIGPSGCGKSTFLRAINRMNDLI---P---SCHTTGALMFDGEDIYGKFTD-E-VLLRKKIGMV 125 (286)
T ss_pred eeeEEEEcC--CCEEEEECCCCCCHHHHHHHHhcccccC---C---CCCCceEEEECCEEhhhcccc-h-HHhhhcEEEE
Confidence 578999999 8899999999999999999999974310 0 002689999999876421110 0 0011233444
Q ss_pred ccccccc--cchhHHHHHHhcC---ChHHHHHHHHHHHHHccC------ccccccCcccccceecccee---------ee
Q 018394 88 RQVIAVS--KSSDIVLMVLDAS---KSEGHRQILTKELEAVGL------RLNKRPPQIYFKKKKTGGIS---------FN 147 (356)
Q Consensus 88 ~~~~~~~--~~~d~i~~v~d~~---~~~~~~~~i~~~L~~~~i------~l~~~~~~lS~g~~qr~~ia---------l~ 147 (356)
.|....+ ...+.+.+..... ......+.+.+.++.+++ .+++.+..||+||+||+.++ ++
T Consensus 126 ~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgGq~qrv~LAraL~~~p~lll 205 (286)
T PRK14275 126 FQKPNPFPKSIFDNIAYGPRLHGINDKKQLEEIVEKSLRKAALWDEVSDRLDKNALGLSGGQQQRLCVARTLAVEPEILL 205 (286)
T ss_pred CCCCCCCccCHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHhCCccchhhHhhCChhhCCHHHHHHHHHHHHHhcCCCEEE
Confidence 4433222 2244444332211 111223456677777775 35778899999999999988 99
Q ss_pred ecCCCCCCCHHHHHHH---HHHhcccCcEEEEccCCCHHHHHHHHhccccccceEEEeecC
Q 018394 148 STLPLTHVDEKLCYQI---LHEYKIHNAEVLFREDATVDDLIDVIEGNRKYMKCVYVYNKI 205 (356)
Q Consensus 148 ~DEp~~~LD~~~~~~i---l~~l~~~~~~i~~thd~~~~~~~~~i~~~~~~~p~i~v~NK~ 205 (356)
+||||++||+.....+ |+.+....++|++||+.....- .+..+++++..
T Consensus 206 LDEPt~gLD~~~~~~l~~~L~~~~~~~tvIivsH~~~~~~~---------~~d~i~~L~~G 257 (286)
T PRK14275 206 LDEPTSALDPKATAKIEDLIQELRGSYTIMIVTHNMQQASR---------VSDYTMFFYEG 257 (286)
T ss_pred EeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHH---------hCCEEEEEECC
Confidence 9999999999875554 4444444589999999765321 13556666654
No 243
>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.
Probab=99.81 E-value=5.4e-20 Score=168.65 Aligned_cols=159 Identities=13% Similarity=0.078 Sum_probs=104.4
Q ss_pred CCCCeEEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCccccccccccccceEEEECCEeecccCccccccccccCcccc
Q 018394 8 AGEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRG 87 (356)
Q Consensus 8 ~~~s~~v~~~~g~~v~LvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~~D~pGl~~~~~~~~~~~ 87 (356)
.+++|++.+ |++++|+|+||||||||+++|+|...+ ..|.+.++|.++...+...+ ...+++.
T Consensus 19 ~~isl~i~~--Ge~~~i~G~nGsGKSTLl~~l~Gl~~~-----------~~G~i~~~g~~~~~~~~~~~----~~~i~~~ 81 (237)
T cd03252 19 DNISLRIKP--GEVVGIVGRSGSGKSTLTKLIQRFYVP-----------ENGRVLVDGHDLALADPAWL----RRQVGVV 81 (237)
T ss_pred eceEEEEcC--CCEEEEECCCCCCHHHHHHHHhcCcCC-----------CCCEEEECCeehHhcCHHHH----hhcEEEE
Confidence 688999999 889999999999999999999999876 78999999987653322111 1123333
Q ss_pred cccccccc--chhHHHHHHhcCChHHHH-----HHHHHHHHHc--cC--ccccccCcccccceecccee---------ee
Q 018394 88 RQVIAVSK--SSDIVLMVLDASKSEGHR-----QILTKELEAV--GL--RLNKRPPQIYFKKKKTGGIS---------FN 147 (356)
Q Consensus 88 ~~~~~~~~--~~d~i~~v~d~~~~~~~~-----~~i~~~L~~~--~i--~l~~~~~~lS~g~~qr~~ia---------l~ 147 (356)
.|....+. ..+.+.+........... ..+.+.++.+ ++ .+++++.+||+||+||++++ ++
T Consensus 82 ~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~LSgG~~qrv~laral~~~p~lll 161 (237)
T cd03252 82 LQENVLFNRSIRDNIALADPGMSMERVIEAAKLAGAHDFISELPEGYDTIVGEQGAGLSGGQRQRIAIARALIHNPRILI 161 (237)
T ss_pred cCCchhccchHHHHhhccCCCCCHHHHHHHHHHcCcHHHHHhCcccccchhhcCCCcCCHHHHHHHHHHHHHhhCCCEEE
Confidence 33322221 122222111011110100 0122334443 33 35678899999999999998 99
Q ss_pred ecCCCCCCCHHHHHHH---HHHhcccCcEEEEccCCCHH
Q 018394 148 STLPLTHVDEKLCYQI---LHEYKIHNAEVLFREDATVD 183 (356)
Q Consensus 148 ~DEp~~~LD~~~~~~i---l~~l~~~~~~i~~thd~~~~ 183 (356)
+||||++||+.....+ +..+..+.+++++||+....
T Consensus 162 lDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~ 200 (237)
T cd03252 162 FDEATSALDYESEHAIMRNMHDICAGRTVIIIAHRLSTV 200 (237)
T ss_pred EeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHH
Confidence 9999999999985554 44444445899999998643
No 244
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=99.81 E-value=2.5e-19 Score=181.77 Aligned_cols=161 Identities=9% Similarity=0.143 Sum_probs=112.9
Q ss_pred CCCCeEEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCccccccccccccceEEEECCEeecccCccccccccccCcccc
Q 018394 8 AGEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRG 87 (356)
Q Consensus 8 ~~~s~~v~~~~g~~v~LvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~~D~pGl~~~~~~~~~~~ 87 (356)
.++||++.+ |++++|+|+||||||||+++|+|...+ |..|.|.++|.++...... ......+++.
T Consensus 279 ~~vsl~i~~--Ge~~~l~G~NGsGKSTLlk~i~Gl~~~----------~~~G~i~~~g~~~~~~~~~---~~~~~~i~~v 343 (506)
T PRK13549 279 DDVSFSLRR--GEILGIAGLVGAGRTELVQCLFGAYPG----------RWEGEIFIDGKPVKIRNPQ---QAIAQGIAMV 343 (506)
T ss_pred cceeeEEcC--CcEEEEeCCCCCCHHHHHHHHhCCCCC----------CCCcEEEECCEECCCCCHH---HHHHCCCEEe
Confidence 578999999 889999999999999999999999752 1689999999876422110 0111234444
Q ss_pred cccc---ccc---cchhHHHHHH-hcC------ChHHHHHHHHHHHHHccC---ccccccCcccccceecccee------
Q 018394 88 RQVI---AVS---KSSDIVLMVL-DAS------KSEGHRQILTKELEAVGL---RLNKRPPQIYFKKKKTGGIS------ 145 (356)
Q Consensus 88 ~~~~---~~~---~~~d~i~~v~-d~~------~~~~~~~~i~~~L~~~~i---~l~~~~~~lS~g~~qr~~ia------ 145 (356)
.|.. ..+ ...+.+.+.. ... ......+.+.+.|+.+++ ..++++.+||+||+||+.||
T Consensus 344 ~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~kqrv~lA~al~~~ 423 (506)
T PRK13549 344 PEDRKRDGIVPVMGVGKNITLAALDRFTGGSRIDDAAELKTILESIQRLKVKTASPELAIARLSGGNQQKAVLAKCLLLN 423 (506)
T ss_pred CcchhhCCCcCCCCHHHHhhhhhhhhhccCcccChHHHHHHHHHHHHhcCccCCCcccccccCCHHHHHHHHHHHHHhhC
Confidence 4432 122 2234443221 111 112234567889999998 36888999999999999998
Q ss_pred ---eeecCCCCCCCHHHHHH---HHHHhcc-cCcEEEEccCCCHH
Q 018394 146 ---FNSTLPLTHVDEKLCYQ---ILHEYKI-HNAEVLFREDATVD 183 (356)
Q Consensus 146 ---l~~DEp~~~LD~~~~~~---il~~l~~-~~~~i~~thd~~~~ 183 (356)
+++||||++||+..... ++..+.. +.++|++|||.+..
T Consensus 424 p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvi~~sHd~~~~ 468 (506)
T PRK13549 424 PKILILDEPTRGIDVGAKYEIYKLINQLVQQGVAIIVISSELPEV 468 (506)
T ss_pred CCEEEEcCCCCCcCHhHHHHHHHHHHHHHHCCCEEEEECCCHHHH
Confidence 99999999999988555 4444543 45999999997653
No 245
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=99.81 E-value=1.7e-19 Score=182.74 Aligned_cols=160 Identities=14% Similarity=0.132 Sum_probs=112.0
Q ss_pred CCCCeEEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCccccccccccccceEEEECCEeecccCccccccccccCcccc
Q 018394 8 AGEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRG 87 (356)
Q Consensus 8 ~~~s~~v~~~~g~~v~LvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~~D~pGl~~~~~~~~~~~ 87 (356)
+++||++.+ |++++|+|+||||||||+++|+|...+ ..|.|.++|.++... .+. ......+++.
T Consensus 270 ~~isl~i~~--Ge~~~iiG~NGsGKSTLlk~l~G~~~p-----------~~G~i~~~g~~~~~~-~~~--~~~~~~i~~~ 333 (501)
T PRK11288 270 EPISFSVRA--GEIVGLFGLVGAGRSELMKLLYGATRR-----------TAGQVYLDGKPIDIR-SPR--DAIRAGIMLC 333 (501)
T ss_pred cceeEEEeC--CcEEEEEcCCCCCHHHHHHHHcCCCcC-----------CCceEEECCEECCCC-CHH--HHHhCCCEEc
Confidence 688999999 889999999999999999999999866 789999999876421 111 0111223333
Q ss_pred ccccc---ccc---chhHHHHHHhcC--------ChHHHHHHHHHHHHHccC---ccccccCcccccceecccee-----
Q 018394 88 RQVIA---VSK---SSDIVLMVLDAS--------KSEGHRQILTKELEAVGL---RLNKRPPQIYFKKKKTGGIS----- 145 (356)
Q Consensus 88 ~~~~~---~~~---~~d~i~~v~d~~--------~~~~~~~~i~~~L~~~~i---~l~~~~~~lS~g~~qr~~ia----- 145 (356)
.|... .+. ..+.+.+..... ......+.+.+.|+.+++ ..++++..||+||+||+.||
T Consensus 334 ~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrl~la~al~~ 413 (501)
T PRK11288 334 PEDRKAEGIIPVHSVADNINISARRHHLRAGCLINNRWEAENADRFIRSLNIKTPSREQLIMNLSGGNQQKAILGRWLSE 413 (501)
T ss_pred CcCHhhCCCcCCCCHHHHhccccchhhcccccccChHHHHHHHHHHHHhcCcccCCccCccccCCHHHHHHHHHHHHHcc
Confidence 33211 111 223332211100 112233467889999998 36888999999999999998
Q ss_pred ----eeecCCCCCCCHHHHHHHHH---Hhcc-cCcEEEEccCCCHH
Q 018394 146 ----FNSTLPLTHVDEKLCYQILH---EYKI-HNAEVLFREDATVD 183 (356)
Q Consensus 146 ----l~~DEp~~~LD~~~~~~il~---~l~~-~~~~i~~thd~~~~ 183 (356)
+++||||++||.....++++ .+.. +.++|++|||....
T Consensus 414 ~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviivsHd~~~~ 459 (501)
T PRK11288 414 DMKVILLDEPTRGIDVGAKHEIYNVIYELAAQGVAVLFVSSDLPEV 459 (501)
T ss_pred CCCEEEEcCCCCCCCHhHHHHHHHHHHHHHhCCCEEEEECCCHHHH
Confidence 99999999999998665554 4443 45999999997654
No 246
>PRK13547 hmuV hemin importer ATP-binding subunit; Provisional
Probab=99.81 E-value=3.3e-19 Score=166.94 Aligned_cols=180 Identities=14% Similarity=0.115 Sum_probs=117.4
Q ss_pred CCCCeEEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCcc-ccccccccccceEEEECCEeecccCccccccccccCccc
Q 018394 8 AGEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAA-SYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGR 86 (356)
Q Consensus 8 ~~~s~~v~~~~g~~v~LvG~~gaGKSTLln~L~g~~~~vs-~~p~TT~~~~~G~i~~~g~~i~~~D~pGl~~~~~~~~~~ 86 (356)
.++||++.+ |++++|+|+|||||||||++|+|...+.. .... ...|.+.++|.++.-.+...+. ...++
T Consensus 18 ~~vsl~i~~--Ge~~~l~G~nGsGKSTLl~~laG~~~p~~~~~~~----~~~G~i~~~g~~~~~~~~~~~~----~~~~~ 87 (272)
T PRK13547 18 RDLSLRIEP--GRVTALLGRNGAGKSTLLKALAGDLTGGGAPRGA----RVTGDVTLNGEPLAAIDAPRLA----RLRAV 87 (272)
T ss_pred ecceEEEcC--CCEEEEECCCCCCHHHHHHHHhCCCCCccccccc----CCceEEEECCEEcccCCHHHHH----hhcEE
Confidence 589999999 88999999999999999999999976510 0000 0279999999877533322111 11223
Q ss_pred cccccc---cccchhHHHHHHhcC------ChHHHHHHHHHHHHHccC--ccccccCcccccceecccee----------
Q 018394 87 GRQVIA---VSKSSDIVLMVLDAS------KSEGHRQILTKELEAVGL--RLNKRPPQIYFKKKKTGGIS---------- 145 (356)
Q Consensus 87 ~~~~~~---~~~~~d~i~~v~d~~------~~~~~~~~i~~~L~~~~i--~l~~~~~~lS~g~~qr~~ia---------- 145 (356)
..|... .....+.+.+..... ......+.+.+.|+.+++ .+++++..||+|++||+.++
T Consensus 88 v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~~~~~~ 167 (272)
T PRK13547 88 LPQAAQPAFAFSAREIVLLGRYPHARRAGALTHRDGEIAWQALALAGATALVGRDVTTLSGGELARVQFARVLAQLWPPH 167 (272)
T ss_pred ecccCCCCCCCcHHHHHhhcccccccccccCCHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHHHHHHHHHHHhcccccc
Confidence 333221 122234443321110 012234557788999999 67888999999999999764
Q ss_pred --------eeecCCCCCCCHHHHHHH---HHHhcc--cCcEEEEccCCCHHHHHHHHhccccccceEEEeecCC
Q 018394 146 --------FNSTLPLTHVDEKLCYQI---LHEYKI--HNAEVLFREDATVDDLIDVIEGNRKYMKCVYVYNKID 206 (356)
Q Consensus 146 --------l~~DEp~~~LD~~~~~~i---l~~l~~--~~~~i~~thd~~~~~~~~~i~~~~~~~p~i~v~NK~D 206 (356)
+++||||++||+.....+ ++++.. +.+++++||+.....- .+..+++++...
T Consensus 168 ~~~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tviiisH~~~~~~~---------~~d~i~~l~~G~ 232 (272)
T PRK13547 168 DAAQPPRYLLLDEPTAALDLAHQHRLLDTVRRLARDWNLGVLAIVHDPNLAAR---------HADRIAMLADGA 232 (272)
T ss_pred ccCCCCCEEEEcCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHH---------hCCEEEEEECCe
Confidence 678999999999885554 444433 4589999999754321 235666666543
No 247
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=99.81 E-value=1.3e-19 Score=188.19 Aligned_cols=178 Identities=15% Similarity=0.173 Sum_probs=127.1
Q ss_pred CCCCeEEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCccccccccccccceEEEECCEeecccCccccccccccCcccc
Q 018394 8 AGEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRG 87 (356)
Q Consensus 8 ~~~s~~v~~~~g~~v~LvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~~D~pGl~~~~~~~~~~~ 87 (356)
.++||+++. |+.|||+|+||||||||++.|+|...| ..|.|.+||.++..+|...+++ .++.+
T Consensus 490 ~~isL~I~~--Ge~vaIvG~SGsGKSTL~KLL~gly~p-----------~~G~I~~dg~dl~~i~~~~lR~----~ig~V 552 (709)
T COG2274 490 EDLSLEIPP--GEKVAIVGRSGSGKSTLLKLLLGLYKP-----------QQGRILLDGVDLNDIDLASLRR----QVGYV 552 (709)
T ss_pred hceeEEeCC--CCEEEEECCCCCCHHHHHHHHhcCCCC-----------CCceEEECCEeHHhcCHHHHHh----heeEE
Confidence 578999999 889999999999999999999999987 8999999999999998776653 34555
Q ss_pred ccccccccc--hhHHHHHHhcCChHHHHHHHHHHHHHccC-------------ccccccCcccccceecccee-------
Q 018394 88 RQVIAVSKS--SDIVLMVLDASKSEGHRQILTKELEAVGL-------------RLNKRPPQIYFKKKKTGGIS------- 145 (356)
Q Consensus 88 ~~~~~~~~~--~d~i~~v~d~~~~~~~~~~i~~~L~~~~i-------------~l~~~~~~lS~g~~qr~~ia------- 145 (356)
.|....+.. .|++.+ ..+....+.+.+.+...|+ .+...-..||||||||+.||
T Consensus 553 ~Q~~~Lf~gSI~eNi~l----~~p~~~~e~i~~A~~~ag~~~fI~~lP~gy~t~v~E~G~~LSGGQrQrlalARaLl~~P 628 (709)
T COG2274 553 LQDPFLFSGSIRENIAL----GNPEATDEEIIEAAQLAGAHEFIENLPMGYDTPVGEGGANLSGGQRQRLALARALLSKP 628 (709)
T ss_pred cccchhhcCcHHHHHhc----CCCCCCHHHHHHHHHHhCcHHHHHhcccccccccccCCCCCCHHHHHHHHHHHHhccCC
Confidence 554443332 233322 1222222334444444333 23445578999999999998
Q ss_pred --eeecCCCCCCCHHHHHHHHHHhc---ccCcEEEEccCCCHHHHHHHHhccccccceEEEeecCCCCChhhHHHH
Q 018394 146 --FNSTLPLTHVDEKLCYQILHEYK---IHNAEVLFREDATVDDLIDVIEGNRKYMKCVYVYNKIDVIGIDDVDKL 216 (356)
Q Consensus 146 --l~~DEp~~~LD~~~~~~il~~l~---~~~~~i~~thd~~~~~~~~~i~~~~~~~p~i~v~NK~Dl~~~~~~~~l 216 (356)
+++||||++||+++-+.+++.+. .++|.|+++|..+... +...|+|+.+.-+......+++
T Consensus 629 ~ILlLDEaTSaLD~~sE~~I~~~L~~~~~~~T~I~IaHRl~ti~----------~adrIiVl~~Gkiv~~gs~~el 694 (709)
T COG2274 629 KILLLDEATSALDPETEAIILQNLLQILQGRTVIIIAHRLSTIR----------SADRIIVLDQGKIVEQGSHEEL 694 (709)
T ss_pred CEEEEeCcccccCHhHHHHHHHHHHHHhcCCeEEEEEccchHhh----------hccEEEEccCCceeccCCHHHH
Confidence 99999999999998666655544 5689999999976543 3477888877765544333333
No 248
>TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein. Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif
Probab=99.81 E-value=1.2e-19 Score=190.53 Aligned_cols=169 Identities=15% Similarity=0.124 Sum_probs=125.3
Q ss_pred CCCCeEEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCccccccccccccceEEEECCEeecccCccccccccccCcccc
Q 018394 8 AGEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRG 87 (356)
Q Consensus 8 ~~~s~~v~~~~g~~v~LvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~~D~pGl~~~~~~~~~~~ 87 (356)
+++||++++ |+.+||+|+||||||||++.|+|...| .+|.|.++|.++..+|...++ ..++..
T Consensus 470 ~~isl~i~~--Ge~vaIvG~sGsGKSTLlklL~gl~~p-----------~~G~I~idg~~i~~~~~~~lr----~~i~~v 532 (686)
T TIGR03797 470 DDVSLQIEP--GEFVAIVGPSGSGKSTLLRLLLGFETP-----------ESGSVFYDGQDLAGLDVQAVR----RQLGVV 532 (686)
T ss_pred eeeEEEECC--CCEEEEECCCCCCHHHHHHHHhCCCCC-----------CCCEEEECCEEcCcCCHHHHH----hccEEE
Confidence 689999999 889999999999999999999999877 899999999999888765443 245666
Q ss_pred ccccccccc--hhHHHHHHhcCChHHHHHHHHHHHHHccC--cc-----------ccccCcccccceecccee-------
Q 018394 88 RQVIAVSKS--SDIVLMVLDASKSEGHRQILTKELEAVGL--RL-----------NKRPPQIYFKKKKTGGIS------- 145 (356)
Q Consensus 88 ~~~~~~~~~--~d~i~~v~d~~~~~~~~~~i~~~L~~~~i--~l-----------~~~~~~lS~g~~qr~~ia------- 145 (356)
.|....+.. .|++.+. .+ ...+.+.+.++..++ .+ ...-..||+||+||+++|
T Consensus 533 ~Q~~~lf~gTI~eNi~~~----~~-~~~e~i~~al~~a~l~~~i~~lp~G~dt~ige~G~~LSGGQrQRialARAll~~p 607 (686)
T TIGR03797 533 LQNGRLMSGSIFENIAGG----AP-LTLDEAWEAARMAGLAEDIRAMPMGMHTVISEGGGTLSGGQRQRLLIARALVRKP 607 (686)
T ss_pred ccCCccCcccHHHHHhcC----CC-CCHHHHHHHHHHcCcHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHhcCC
Confidence 666655544 3444332 11 223445666666665 22 223357999999999998
Q ss_pred --eeecCCCCCCCHHHHHHHHHHhcc-cCcEEEEccCCCHHHHHHHHhccccccceEEEeecCCCC
Q 018394 146 --FNSTLPLTHVDEKLCYQILHEYKI-HNAEVLFREDATVDDLIDVIEGNRKYMKCVYVYNKIDVI 208 (356)
Q Consensus 146 --l~~DEp~~~LD~~~~~~il~~l~~-~~~~i~~thd~~~~~~~~~i~~~~~~~p~i~v~NK~Dl~ 208 (356)
+++||||++||+++...+++.+.. ..|++++||+.+.... .+.|+++++.-+.
T Consensus 608 ~iLiLDEpTS~LD~~te~~i~~~L~~~~~T~IiItHr~~~i~~----------~D~Iivl~~G~iv 663 (686)
T TIGR03797 608 RILLFDEATSALDNRTQAIVSESLERLKVTRIVIAHRLSTIRN----------ADRIYVLDAGRVV 663 (686)
T ss_pred CEEEEeCCccCCCHHHHHHHHHHHHHhCCeEEEEecChHHHHc----------CCEEEEEECCEEE
Confidence 999999999999987777666653 4699999999754322 4678888766544
No 249
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=99.81 E-value=1.6e-19 Score=182.48 Aligned_cols=158 Identities=13% Similarity=0.066 Sum_probs=107.3
Q ss_pred CCCCeEEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCccccccccccccceEEEECCEeecccCccccccccccCcccc
Q 018394 8 AGEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRG 87 (356)
Q Consensus 8 ~~~s~~v~~~~g~~v~LvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~~D~pGl~~~~~~~~~~~ 87 (356)
.++||++.+ |++++|+|+|||||||||++|+|...+ ..|.+.++|.++...+.... ...+++.
T Consensus 20 ~~vsl~i~~--Ge~~~liG~nGsGKSTLl~~l~G~~~p-----------~~G~i~~~~~~~~~~~~~~~----~~~i~~~ 82 (490)
T PRK10938 20 QLPSLTLNA--GDSWAFVGANGSGKSALARALAGELPL-----------LSGERQSQFSHITRLSFEQL----QKLVSDE 82 (490)
T ss_pred ccceEEEcC--CCEEEEECCCCCCHHHHHHHHhccCCC-----------CCceEEECCcccccCCHHHH----HHHhcee
Confidence 689999999 889999999999999999999999866 78999998866532221111 0112222
Q ss_pred ccccc--cccch-hHH-HHHHhcC-ChHHHHHHHHHHHHHccC--ccccccCcccccceecccee---------eeecCC
Q 018394 88 RQVIA--VSKSS-DIV-LMVLDAS-KSEGHRQILTKELEAVGL--RLNKRPPQIYFKKKKTGGIS---------FNSTLP 151 (356)
Q Consensus 88 ~~~~~--~~~~~-d~i-~~v~d~~-~~~~~~~~i~~~L~~~~i--~l~~~~~~lS~g~~qr~~ia---------l~~DEp 151 (356)
.|... .+... ... +.+.+.. ......+++.+.|+.+++ .+++++.+||+||+||++|| +++|||
T Consensus 83 ~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEP 162 (490)
T PRK10938 83 WQRNNTDMLSPGEDDTGRTTAEIIQDEVKDPARCEQLAQQFGITALLDRRFKYLSTGETRKTLLCQALMSEPDLLILDEP 162 (490)
T ss_pred ccCcchhhcccchhhccccHHHhcccchhHHHHHHHHHHHcCCHhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEcCC
Confidence 22110 00000 000 0011110 011234567888999999 67899999999999999998 999999
Q ss_pred CCCCCHHHHHHHH---HHhcc-cCcEEEEccCCCH
Q 018394 152 LTHVDEKLCYQIL---HEYKI-HNAEVLFREDATV 182 (356)
Q Consensus 152 ~~~LD~~~~~~il---~~l~~-~~~~i~~thd~~~ 182 (356)
|++||+.....++ +.+.. +.++|++||+...
T Consensus 163 t~~LD~~~~~~l~~~l~~~~~~g~tvii~tH~~~~ 197 (490)
T PRK10938 163 FDGLDVASRQQLAELLASLHQSGITLVLVLNRFDE 197 (490)
T ss_pred cccCCHHHHHHHHHHHHHHHhcCCeEEEEeCCHHH
Confidence 9999999865544 44433 4599999999754
No 250
>PRK14272 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.80 E-value=4.3e-19 Score=164.16 Aligned_cols=181 Identities=15% Similarity=0.118 Sum_probs=115.9
Q ss_pred CCCCeEEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCccccccccccccceEEEECCEeecccCccccccccccCcccc
Q 018394 8 AGEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRG 87 (356)
Q Consensus 8 ~~~s~~v~~~~g~~v~LvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~~D~pGl~~~~~~~~~~~ 87 (356)
.++||++.+ |++++|+|+||||||||+++|+|...+. |. ....|.+.++|.++...+.. . ......+++.
T Consensus 21 ~~vs~~i~~--Ge~~~i~G~nGsGKSTLl~~i~G~~~~~---~~---~~~~G~i~~~g~~~~~~~~~-~-~~~~~~i~~~ 90 (252)
T PRK14272 21 KNVNLDVQR--GTVNALIGPSGCGKTTFLRAINRMHDLT---PG---ARVTGRILLDGQDIYGPRVD-P-VAMRRRVGMV 90 (252)
T ss_pred ccceEEEcC--CCEEEEECCCCCCHHHHHHHHhccCCCC---cC---CCCceeEEECCEEcccCccC-H-HHhhceeEEE
Confidence 689999999 8899999999999999999999987540 00 01379999999876421100 0 0111223444
Q ss_pred ccccccccc---hhHHHHHHhcC---ChHHHHHHHHHHHHHccC------ccccccCcccccceecccee---------e
Q 018394 88 RQVIAVSKS---SDIVLMVLDAS---KSEGHRQILTKELEAVGL------RLNKRPPQIYFKKKKTGGIS---------F 146 (356)
Q Consensus 88 ~~~~~~~~~---~d~i~~v~d~~---~~~~~~~~i~~~L~~~~i------~l~~~~~~lS~g~~qr~~ia---------l 146 (356)
.|....+.. .+.+.+..... ......+.+.+.++.+++ .+++++..||+||+||++++ +
T Consensus 91 ~q~~~~~~~~t~~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~ll 170 (252)
T PRK14272 91 FQKPNPFPTMSVFDNVVAGLKLAGIRDRDHLMEVAERSLRGAALWDEVKDRLKTPATGLSGGQQQRLCIARALAVEPEIL 170 (252)
T ss_pred eccCccCcCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCcchhhhhhhcCCcccCCHHHHHHHHHHHHHhcCCCEE
Confidence 443333322 34443322211 111223344555555554 34778899999999999988 9
Q ss_pred eecCCCCCCCHHHHHH---HHHHhcccCcEEEEccCCCHHHHHHHHhccccccceEEEeecCCC
Q 018394 147 NSTLPLTHVDEKLCYQ---ILHEYKIHNAEVLFREDATVDDLIDVIEGNRKYMKCVYVYNKIDV 207 (356)
Q Consensus 147 ~~DEp~~~LD~~~~~~---il~~l~~~~~~i~~thd~~~~~~~~~i~~~~~~~p~i~v~NK~Dl 207 (356)
++||||++||+..... +|+.+....+++++||+...... .+..+++++...+
T Consensus 171 llDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~---------~~d~i~~l~~G~i 225 (252)
T PRK14272 171 LMDEPTSALDPASTARIEDLMTDLKKVTTIIIVTHNMHQAAR---------VSDTTSFFLVGDL 225 (252)
T ss_pred EEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHH---------hCCEEEEEECCEE
Confidence 9999999999987554 44454445689999999764321 2356677765543
No 251
>PRK09580 sufC cysteine desulfurase ATPase component; Reviewed
Probab=99.80 E-value=3.5e-19 Score=164.35 Aligned_cols=160 Identities=16% Similarity=0.120 Sum_probs=105.4
Q ss_pred CCCCeEEEecCCcEEEEEcCCCCcHHHHHHHHHcCC--CCccccccccccccceEEEECCEeecccCccccccccccCcc
Q 018394 8 AGEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTH--SEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKG 85 (356)
Q Consensus 8 ~~~s~~v~~~~g~~v~LvG~~gaGKSTLln~L~g~~--~~vs~~p~TT~~~~~G~i~~~g~~i~~~D~pGl~~~~~~~~~ 85 (356)
.++||++.+ |++++|+|+||||||||+++|+|.. .+ ..|.+.++|.++.-.+.... ....++
T Consensus 18 ~~isl~i~~--Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~-----------~~G~i~~~g~~~~~~~~~~~---~~~~i~ 81 (248)
T PRK09580 18 RGLNLEVRP--GEVHAIMGPNGSGKSTLSATLAGREDYEV-----------TGGTVEFKGKDLLELSPEDR---AGEGIF 81 (248)
T ss_pred ecceeEEcC--CCEEEEECCCCCCHHHHHHHHcCCccCCC-----------CceEEEECCCccccCCHHHH---hhcceE
Confidence 689999999 8899999999999999999999985 34 78999999987643321111 011223
Q ss_pred ccccccccccchhHHHH---HHhc---C------ChHHHHHHHHHHHHHccC---ccccccC-cccccceecccee----
Q 018394 86 RGRQVIAVSKSSDIVLM---VLDA---S------KSEGHRQILTKELEAVGL---RLNKRPP-QIYFKKKKTGGIS---- 145 (356)
Q Consensus 86 ~~~~~~~~~~~~d~i~~---v~d~---~------~~~~~~~~i~~~L~~~~i---~l~~~~~-~lS~g~~qr~~ia---- 145 (356)
+..+....+.......+ +... . ......+.+.+.++.+++ ..++.+. .||+||+||+.||
T Consensus 82 ~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LS~G~~qrv~laral~ 161 (248)
T PRK09580 82 MAFQYPVEIPGVSNQFFLQTALNAVRSYRGQEPLDRFDFQDLMEEKIALLKMPEDLLTRSVNVGFSGGEKKRNDILQMAV 161 (248)
T ss_pred EEecCchhccchhHHHHHHHhhhhhhcccccccchHHHHHHHHHHHHHHcCCChhhcccCCCCCCCHHHHHHHHHHHHHH
Confidence 33332222221111111 1110 0 001113455677787777 2445554 7999999999988
Q ss_pred -----eeecCCCCCCCHHHHHHHHH---Hhcc-cCcEEEEccCCCHH
Q 018394 146 -----FNSTLPLTHVDEKLCYQILH---EYKI-HNAEVLFREDATVD 183 (356)
Q Consensus 146 -----l~~DEp~~~LD~~~~~~il~---~l~~-~~~~i~~thd~~~~ 183 (356)
+++||||++||......+.+ .+.. +.+++++|||....
T Consensus 162 ~~p~illLDEPt~~LD~~~~~~l~~~l~~l~~~~~tiii~sH~~~~~ 208 (248)
T PRK09580 162 LEPELCILDESDSGLDIDALKIVADGVNSLRDGKRSFIIVTHYQRIL 208 (248)
T ss_pred cCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHH
Confidence 99999999999998655544 4443 45999999996643
No 252
>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in
Probab=99.80 E-value=4.4e-19 Score=161.59 Aligned_cols=153 Identities=15% Similarity=0.122 Sum_probs=107.2
Q ss_pred CCCCeEEEecCCcEEEEEcCCCCcHHHHHHHHHcCCC---CccccccccccccceEEEECCEeecccCccccccccccCc
Q 018394 8 AGEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHS---EAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGK 84 (356)
Q Consensus 8 ~~~s~~v~~~~g~~v~LvG~~gaGKSTLln~L~g~~~---~vs~~p~TT~~~~~G~i~~~g~~i~~~D~pGl~~~~~~~~ 84 (356)
.+++|++.+ |++++|+|+||||||||+++|+|... + ..|.+.++|.++.. . .....+
T Consensus 24 ~~vsl~i~~--Ge~~~l~G~nGsGKSTLlk~l~G~~~~~~~-----------~~G~i~~~g~~~~~---~----~~~~~i 83 (226)
T cd03234 24 NDVSLHVES--GQVMAILGSSGSGKTTLLDAISGRVEGGGT-----------TSGQILFNGQPRKP---D----QFQKCV 83 (226)
T ss_pred cCceEEEcC--CeEEEEECCCCCCHHHHHHHHhCccCCCCC-----------CceEEEECCEECCh---H----HhcccE
Confidence 588999999 88999999999999999999999976 5 78999999987631 1 112233
Q ss_pred ccccccccccc---chhHHHHHHhcC--C--h-HHHHHHHHH-HHHHccC--ccccccCcccccceecccee--------
Q 018394 85 GRGRQVIAVSK---SSDIVLMVLDAS--K--S-EGHRQILTK-ELEAVGL--RLNKRPPQIYFKKKKTGGIS-------- 145 (356)
Q Consensus 85 ~~~~~~~~~~~---~~d~i~~v~d~~--~--~-~~~~~~i~~-~L~~~~i--~l~~~~~~lS~g~~qr~~ia-------- 145 (356)
++..|....+. ..+.+.+..... . . ......+.+ .|+.+++ ..++.+..||+|++||++++
T Consensus 84 ~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~ 163 (226)
T cd03234 84 AYVRQDDILLPGLTVRETLTYTAILRLPRKSSDAIRKKRVEDVLLRDLALTRIGGNLVKGISGGERRRVSIAVQLLWDPK 163 (226)
T ss_pred EEeCCCCccCcCCcHHHHHHHHHHhhcccccchHHHHHHHHHHHHHhhcchhhhcccccCcCHHHHHHHHHHHHHHhCCC
Confidence 44444333332 244444322111 1 1 111123444 7888887 56788899999999999988
Q ss_pred -eeecCCCCCCCHHHHHHH---HHHhcc-cCcEEEEccCC
Q 018394 146 -FNSTLPLTHVDEKLCYQI---LHEYKI-HNAEVLFREDA 180 (356)
Q Consensus 146 -l~~DEp~~~LD~~~~~~i---l~~l~~-~~~~i~~thd~ 180 (356)
+++||||++||+.....+ +.++.. +.+++++||+.
T Consensus 164 illlDEP~~gLD~~~~~~~~~~l~~~~~~~~tiii~sh~~ 203 (226)
T cd03234 164 VLILDEPTSGLDSFTALNLVSTLSQLARRNRIVILTIHQP 203 (226)
T ss_pred EEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEecCC
Confidence 999999999999875544 444433 45899999997
No 253
>CHL00131 ycf16 sulfate ABC transporter protein; Validated
Probab=99.80 E-value=4.5e-19 Score=164.04 Aligned_cols=163 Identities=19% Similarity=0.149 Sum_probs=107.9
Q ss_pred CCCCeEEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCccccccccccccceEEEECCEeecccCccccccccccCcccc
Q 018394 8 AGEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRG 87 (356)
Q Consensus 8 ~~~s~~v~~~~g~~v~LvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~~D~pGl~~~~~~~~~~~ 87 (356)
.+++|++.+ |++++|+|+||||||||+++|+|.... .|..|.+.++|.++.-.+..- . ...+.++.
T Consensus 24 ~~vs~~i~~--Ge~~~i~G~nGsGKSTLl~~i~Gl~~~---------~~~~G~i~~~g~~~~~~~~~~-~--~~~~~~~~ 89 (252)
T CHL00131 24 KGLNLSINK--GEIHAIMGPNGSGKSTLSKVIAGHPAY---------KILEGDILFKGESILDLEPEE-R--AHLGIFLA 89 (252)
T ss_pred ecceeEEcC--CcEEEEECCCCCCHHHHHHHHcCCCcC---------cCCCceEEECCEEcccCChhh-h--heeeEEEE
Confidence 589999999 889999999999999999999997310 137899999998765433111 0 01112223
Q ss_pred ccccccccc---hhHHHHHHhc---C------ChHHHHHHHHHHHHHccC---ccccccC-cccccceecccee------
Q 018394 88 RQVIAVSKS---SDIVLMVLDA---S------KSEGHRQILTKELEAVGL---RLNKRPP-QIYFKKKKTGGIS------ 145 (356)
Q Consensus 88 ~~~~~~~~~---~d~i~~v~d~---~------~~~~~~~~i~~~L~~~~i---~l~~~~~-~lS~g~~qr~~ia------ 145 (356)
.|....+.. .+.+.+.... . ......+.+.+.|+.+++ .+++.+. .||+|++||+.+|
T Consensus 90 ~q~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgG~~qrv~la~al~~~ 169 (252)
T CHL00131 90 FQYPIEIPGVSNADFLRLAYNSKRKFQGLPELDPLEFLEIINEKLKLVGMDPSFLSRNVNEGFSGGEKKRNEILQMALLD 169 (252)
T ss_pred eccccccccccHHHHHHHhhhhhhcccccccccHHHHHHHHHHHHHHcCCchhhhccccccCCCHHHHHHHHHHHHHHcC
Confidence 333222222 2222221111 0 011123456778888888 2566676 5999999999988
Q ss_pred ---eeecCCCCCCCHHHHHHHHH---Hhcc-cCcEEEEccCCCHHH
Q 018394 146 ---FNSTLPLTHVDEKLCYQILH---EYKI-HNAEVLFREDATVDD 184 (356)
Q Consensus 146 ---l~~DEp~~~LD~~~~~~il~---~l~~-~~~~i~~thd~~~~~ 184 (356)
+++||||++||......+++ ++.. +.++|++||+.....
T Consensus 170 p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~~tH~~~~~~ 215 (252)
T CHL00131 170 SELAILDETDSGLDIDALKIIAEGINKLMTSENSIILITHYQRLLD 215 (252)
T ss_pred CCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHH
Confidence 99999999999998655544 4433 458999999976543
No 254
>PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional
Probab=99.80 E-value=3.6e-19 Score=166.36 Aligned_cols=162 Identities=21% Similarity=0.214 Sum_probs=112.7
Q ss_pred CCCCeEEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCccccccccccccceEEEECCEeecccCccccccccccCcccc
Q 018394 8 AGEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRG 87 (356)
Q Consensus 8 ~~~s~~v~~~~g~~v~LvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~~D~pGl~~~~~~~~~~~ 87 (356)
.++||++.+ |++++|+|+||||||||+++|+|...+ .+|.+.++|.++...+..-. ......+++.
T Consensus 29 ~~vs~~i~~--Ge~~~i~G~nGsGKSTLl~~l~Gl~~p-----------~sG~i~~~g~~~~~~~~~~~-~~~~~~i~~v 94 (268)
T PRK10419 29 NNVSLSLKS--GETVALLGRSGCGKSTLARLLVGLESP-----------SQGNVSWRGEPLAKLNRAQR-KAFRRDIQMV 94 (268)
T ss_pred eceeEEEcC--CCEEEEECCCCCCHHHHHHHHhCCCCC-----------CCcEEEECCEeccccChhHH-HHHHhcEEEE
Confidence 589999999 889999999999999999999999766 78999999987654322100 0011223333
Q ss_pred ccccc--c---ccchhHHHHHHhc---CChHHHHHHHHHHHHHccC---ccccccCcccccceecccee---------ee
Q 018394 88 RQVIA--V---SKSSDIVLMVLDA---SKSEGHRQILTKELEAVGL---RLNKRPPQIYFKKKKTGGIS---------FN 147 (356)
Q Consensus 88 ~~~~~--~---~~~~d~i~~v~d~---~~~~~~~~~i~~~L~~~~i---~l~~~~~~lS~g~~qr~~ia---------l~ 147 (356)
.|... . ....+.+.+.... .........+.+.|+.+++ ..++.+..||+||+||++|+ ++
T Consensus 95 ~q~~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LS~Ge~qrl~laral~~~p~lll 174 (268)
T PRK10419 95 FQDSISAVNPRKTVREIIREPLRHLLSLDKAERLARASEMLRAVDLDDSVLDKRPPQLSGGQLQRVCLARALAVEPKLLI 174 (268)
T ss_pred EcChhhccCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHHHHHcCCChhHhhCCCccCChHHHHHHHHHHHHhcCCCEEE
Confidence 33321 1 1223333322211 1122334467888999888 35788999999999999998 99
Q ss_pred ecCCCCCCCHHHH---HHHHHHhcc--cCcEEEEccCCCHH
Q 018394 148 STLPLTHVDEKLC---YQILHEYKI--HNAEVLFREDATVD 183 (356)
Q Consensus 148 ~DEp~~~LD~~~~---~~il~~l~~--~~~~i~~thd~~~~ 183 (356)
+||||++||.... .++++++.. +.++|++||+....
T Consensus 175 LDEPt~~LD~~~~~~~~~~l~~~~~~~~~tiiivsH~~~~i 215 (268)
T PRK10419 175 LDEAVSNLDLVLQAGVIRLLKKLQQQFGTACLFITHDLRLV 215 (268)
T ss_pred EeCCCcccCHHHHHHHHHHHHHHHHHcCcEEEEEECCHHHH
Confidence 9999999999874 445555543 45899999997543
No 255
>PRK14270 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.80 E-value=4e-19 Score=164.34 Aligned_cols=165 Identities=18% Similarity=0.118 Sum_probs=111.1
Q ss_pred CCCCeEEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCccccccccccccceEEEECCEeecccCccccccccccCcccc
Q 018394 8 AGEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRG 87 (356)
Q Consensus 8 ~~~s~~v~~~~g~~v~LvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~~D~pGl~~~~~~~~~~~ 87 (356)
+++||++.+ |++++|+|+||||||||+++|+|...+.. ..+..|.+.++|.++...+ +... .....+++.
T Consensus 21 ~~isl~i~~--Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~------~~~~~G~i~~~g~~i~~~~-~~~~-~~~~~i~~~ 90 (251)
T PRK14270 21 NDINLPIYE--NKITALIGPSGCGKSTFLRCLNRMNDLIS------NVKIEGEVLLDGKNIYDKD-VDVV-ELRKRVGMV 90 (251)
T ss_pred eceeEEEcC--CCEEEEECCCCCCHHHHHHHHHhccCccc------CCCCccEEEECCEeccccc-ccHH-HHHhheEEE
Confidence 688999999 88999999999999999999999864310 0125799999998774211 1110 011223444
Q ss_pred ccccccc--cchhHHHHHHhcCC---hHHHHHHHHHHHHHccC------ccccccCcccccceecccee---------ee
Q 018394 88 RQVIAVS--KSSDIVLMVLDASK---SEGHRQILTKELEAVGL------RLNKRPPQIYFKKKKTGGIS---------FN 147 (356)
Q Consensus 88 ~~~~~~~--~~~d~i~~v~d~~~---~~~~~~~i~~~L~~~~i------~l~~~~~~lS~g~~qr~~ia---------l~ 147 (356)
.|....+ ...+.+.+...... .......+.+.++.+++ ..++.+..||+||+||++++ ++
T Consensus 91 ~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~lll 170 (251)
T PRK14270 91 FQKPNPFPMSIYDNVAYGPRIHGIKDKKELDKIVEWALKKAALWDEVKDDLKKSALKLSGGQQQRLCIARTIAVKPDVIL 170 (251)
T ss_pred ecCCCcCCCcHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHcCCchhhhhHhhCCcccCCHHHHHHHHHHHHHhcCCCEEE
Confidence 4433222 22444443222111 11223456677888876 25778899999999999988 99
Q ss_pred ecCCCCCCCHHHHHH---HHHHhcccCcEEEEccCCCH
Q 018394 148 STLPLTHVDEKLCYQ---ILHEYKIHNAEVLFREDATV 182 (356)
Q Consensus 148 ~DEp~~~LD~~~~~~---il~~l~~~~~~i~~thd~~~ 182 (356)
+||||++||+..... +|+.+....+++++||+...
T Consensus 171 lDEP~~~LD~~~~~~l~~~L~~~~~~~tiiivsH~~~~ 208 (251)
T PRK14270 171 MDEPTSALDPISTLKIEDLMVELKKEYTIVIVTHNMQQ 208 (251)
T ss_pred EeCCcccCCHHHHHHHHHHHHHHHhCCeEEEEEcCHHH
Confidence 999999999987554 44444445689999999754
No 256
>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Probab=99.80 E-value=1.4e-19 Score=166.02 Aligned_cols=173 Identities=16% Similarity=0.128 Sum_probs=109.0
Q ss_pred CCCCeEEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCccccccccccccceEEEECCEeecccCccccccccccCcccc
Q 018394 8 AGEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRG 87 (356)
Q Consensus 8 ~~~s~~v~~~~g~~v~LvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~~D~pGl~~~~~~~~~~~ 87 (356)
.+++|++.+ |++++|+|+||||||||+++|+|...+ .+|.+.++|.++.-.+... .....++.
T Consensus 20 ~~i~~~i~~--Ge~~~l~G~nGsGKSTLl~~i~G~~~~-----------~~G~i~~~g~~~~~~~~~~----~~~~i~~~ 82 (238)
T cd03249 20 KGLSLTIPP--GKTVALVGSSGCGKSTVVSLLERFYDP-----------TSGEILLDGVDIRDLNLRW----LRSQIGLV 82 (238)
T ss_pred eceEEEecC--CCEEEEEeCCCCCHHHHHHHHhccCCC-----------CCCEEEECCEehhhcCHHH----HHhhEEEE
Confidence 588999999 889999999999999999999999876 7999999998764322110 11123333
Q ss_pred cccccccc--chhHHHHHHhcCChHHHHH-----HHHHHHHHc--cC--ccccccCcccccceecccee---------ee
Q 018394 88 RQVIAVSK--SSDIVLMVLDASKSEGHRQ-----ILTKELEAV--GL--RLNKRPPQIYFKKKKTGGIS---------FN 147 (356)
Q Consensus 88 ~~~~~~~~--~~d~i~~v~d~~~~~~~~~-----~i~~~L~~~--~i--~l~~~~~~lS~g~~qr~~ia---------l~ 147 (356)
.|....+. ..+.+.+............ .+.+.++.+ ++ .+++.+..||+|++||+.++ ++
T Consensus 83 ~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~qrv~la~al~~~p~lll 162 (238)
T cd03249 83 SQEPVLFDGTIAENIRYGKPDATDEEVEEAAKKANIHDFIMSLPDGYDTLVGERGSQLSGGQKQRIAIARALLRNPKILL 162 (238)
T ss_pred CCchhhhhhhHHHHhhccCCCCCHHHHHHHHHHcChHHHHHhhccccceeeccCCccCCHHHHHHHHHHHHHhcCCCEEE
Confidence 33222221 1222211110111111000 112222222 23 35667889999999999988 99
Q ss_pred ecCCCCCCCHHHHHHH---HHHhcccCcEEEEccCCCHHHHHHHHhccccccceEEEeecCCC
Q 018394 148 STLPLTHVDEKLCYQI---LHEYKIHNAEVLFREDATVDDLIDVIEGNRKYMKCVYVYNKIDV 207 (356)
Q Consensus 148 ~DEp~~~LD~~~~~~i---l~~l~~~~~~i~~thd~~~~~~~~~i~~~~~~~p~i~v~NK~Dl 207 (356)
+||||++||+.....+ |+.+..+.+++++||+....+. +..+++++...+
T Consensus 163 lDEP~~gLD~~~~~~l~~~l~~~~~g~~vi~~sh~~~~~~~----------~d~v~~l~~G~i 215 (238)
T cd03249 163 LDEATSALDAESEKLVQEALDRAMKGRTTIVIAHRLSTIRN----------ADLIAVLQNGQV 215 (238)
T ss_pred EeCccccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHhh----------CCEEEEEECCEE
Confidence 9999999999885544 4444434589999999765432 356667665543
No 257
>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=99.80 E-value=1.5e-19 Score=186.67 Aligned_cols=169 Identities=15% Similarity=0.189 Sum_probs=121.6
Q ss_pred CCCCeEEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCccccccccccccceEEEECCEeecccCccccccccccCcccc
Q 018394 8 AGEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRG 87 (356)
Q Consensus 8 ~~~s~~v~~~~g~~v~LvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~~D~pGl~~~~~~~~~~~ 87 (356)
+++||++++ |+.+||+|++|||||||++.|+|.. | ..|.|.++|.++.-++...++ ..++++
T Consensus 367 ~~i~l~i~~--G~~vaIvG~SGsGKSTL~~lL~g~~-p-----------~~G~I~i~g~~i~~~~~~~lr----~~i~~v 428 (588)
T PRK11174 367 GPLNFTLPA--GQRIALVGPSGAGKTSLLNALLGFL-P-----------YQGSLKINGIELRELDPESWR----KHLSWV 428 (588)
T ss_pred eeeEEEEcC--CCEEEEECCCCCCHHHHHHHHhcCC-C-----------CCcEEEECCEecccCCHHHHH----hheEEe
Confidence 689999999 8899999999999999999999998 7 789999999998877755443 235566
Q ss_pred ccccccccc--hhHHHHHHhcCChHHHHHHHHHHHHHccC-------------ccccccCcccccceecccee-------
Q 018394 88 RQVIAVSKS--SDIVLMVLDASKSEGHRQILTKELEAVGL-------------RLNKRPPQIYFKKKKTGGIS------- 145 (356)
Q Consensus 88 ~~~~~~~~~--~d~i~~v~d~~~~~~~~~~i~~~L~~~~i-------------~l~~~~~~lS~g~~qr~~ia------- 145 (356)
.|....+.. .|++.+.- +....+.+.+.++..++ .+...-..|||||+||++||
T Consensus 429 ~Q~~~LF~~TI~eNI~~g~----~~~~~eei~~al~~a~l~~~i~~lp~G~dT~vge~G~~LSGGQrQRialARAll~~~ 504 (588)
T PRK11174 429 GQNPQLPHGTLRDNVLLGN----PDASDEQLQQALENAWVSEFLPLLPQGLDTPIGDQAAGLSVGQAQRLALARALLQPC 504 (588)
T ss_pred cCCCcCCCcCHHHHhhcCC----CCCCHHHHHHHHHHhCHHHHHHhcccccccccccCCCCCCHHHHHHHHHHHHHhcCC
Confidence 666655544 45554421 11112334444444333 23334467999999999999
Q ss_pred --eeecCCCCCCCHHHHHHHHHHh---cccCcEEEEccCCCHHHHHHHHhccccccceEEEeecCCCC
Q 018394 146 --FNSTLPLTHVDEKLCYQILHEY---KIHNAEVLFREDATVDDLIDVIEGNRKYMKCVYVYNKIDVI 208 (356)
Q Consensus 146 --l~~DEp~~~LD~~~~~~il~~l---~~~~~~i~~thd~~~~~~~~~i~~~~~~~p~i~v~NK~Dl~ 208 (356)
+++||||++||.++...+++.+ ..+.|++++||+.+.... .+.|+++.+.-+.
T Consensus 505 ~IliLDE~TSaLD~~te~~i~~~l~~~~~~~TvIiItHrl~~i~~----------aD~Iivl~~G~i~ 562 (588)
T PRK11174 505 QLLLLDEPTASLDAHSEQLVMQALNAASRRQTTLMVTHQLEDLAQ----------WDQIWVMQDGQIV 562 (588)
T ss_pred CEEEEeCCccCCCHHHHHHHHHHHHHHhCCCEEEEEecChHHHHh----------CCEEEEEeCCeEe
Confidence 9999999999999866655544 345799999999754322 3677787765444
No 258
>PRK14249 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.80 E-value=5.5e-19 Score=163.43 Aligned_cols=181 Identities=15% Similarity=0.113 Sum_probs=117.8
Q ss_pred CCCCeEEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCccccccccccccceEEEECCEeecccCccccccccccCcccc
Q 018394 8 AGEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRG 87 (356)
Q Consensus 8 ~~~s~~v~~~~g~~v~LvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~~D~pGl~~~~~~~~~~~ 87 (356)
.+++|++.+ |++++|+|+||||||||+++|+|...+.+. .+..|.+.++|.++...+. .. ......+++.
T Consensus 21 ~~~s~~i~~--G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~~------~~~~G~v~~~g~~~~~~~~-~~-~~~~~~i~~v 90 (251)
T PRK14249 21 KNINMDFPE--RQITAIIGPSGCGKSTLLRALNRMNDIVSG------ARLEGAVLLDNENIYSPNL-DV-VNLRKRVGMV 90 (251)
T ss_pred cceEEEEcC--CCEEEEECCCCCCHHHHHHHHhcccCcccc------CCcccEEEECCEEcccccc-Ch-HHhhceEEEE
Confidence 689999999 889999999999999999999999765211 1236999999987632110 00 0112233444
Q ss_pred cccccccc--chhHHHHHHhcC--C-hHHHHHHHHHHHHHccC------ccccccCcccccceecccee---------ee
Q 018394 88 RQVIAVSK--SSDIVLMVLDAS--K-SEGHRQILTKELEAVGL------RLNKRPPQIYFKKKKTGGIS---------FN 147 (356)
Q Consensus 88 ~~~~~~~~--~~d~i~~v~d~~--~-~~~~~~~i~~~L~~~~i------~l~~~~~~lS~g~~qr~~ia---------l~ 147 (356)
.|....+. ..+.+.+..... . .....+.+.+.++.+++ .+++.+..||+||+||++++ ++
T Consensus 91 ~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~Gq~qrv~laral~~~p~lll 170 (251)
T PRK14249 91 FQQPNPFPKSIFDNVAFGPRMLGTTAQSRLDEVVEKSLRQAALWDEVKDNLHKSGLALSGGQQQRLCIARVLAIEPEVIL 170 (251)
T ss_pred ecCCccCcCcHHHHHhhHHHhcCCChhhHHHHHHHHHHHHhCCchhhhhHhhCCcccCCHHHHHHHHHHHHHhcCCCEEE
Confidence 44433322 234443322111 1 11122345566777765 36788999999999999988 99
Q ss_pred ecCCCCCCCHHHHH---HHHHHhcccCcEEEEccCCCHHHHHHHHhccccccceEEEeecCCC
Q 018394 148 STLPLTHVDEKLCY---QILHEYKIHNAEVLFREDATVDDLIDVIEGNRKYMKCVYVYNKIDV 207 (356)
Q Consensus 148 ~DEp~~~LD~~~~~---~il~~l~~~~~~i~~thd~~~~~~~~~i~~~~~~~p~i~v~NK~Dl 207 (356)
+||||++||+.... ++++.+..+.+++++||+...... .+..+++++...+
T Consensus 171 LDEPt~~LD~~~~~~l~~~l~~~~~~~tilivsh~~~~~~~---------~~d~i~~l~~G~i 224 (251)
T PRK14249 171 MDEPCSALDPVSTMRIEELMQELKQNYTIAIVTHNMQQAAR---------ASDWTGFLLTGDL 224 (251)
T ss_pred EeCCCccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHh---------hCCEEEEEeCCeE
Confidence 99999999998754 555555444699999999765332 1255666665443
No 259
>PRK11176 lipid transporter ATP-binding/permease protein; Provisional
Probab=99.80 E-value=2e-19 Score=185.54 Aligned_cols=171 Identities=12% Similarity=0.107 Sum_probs=121.3
Q ss_pred CCCCeEEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCccccccccccccceEEEECCEeecccCccccccccccCcccc
Q 018394 8 AGEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRG 87 (356)
Q Consensus 8 ~~~s~~v~~~~g~~v~LvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~~D~pGl~~~~~~~~~~~ 87 (356)
.+++|++++ |+.++|+|+||||||||+++|+|...| ..|.+.++|.++..++...++ ..+++.
T Consensus 360 ~~i~l~i~~--G~~~aIvG~sGsGKSTLl~ll~gl~~p-----------~~G~I~i~g~~i~~~~~~~~~----~~i~~v 422 (582)
T PRK11176 360 RNINFKIPA--GKTVALVGRSGSGKSTIANLLTRFYDI-----------DEGEILLDGHDLRDYTLASLR----NQVALV 422 (582)
T ss_pred cCceEEeCC--CCEEEEECCCCCCHHHHHHHHHhccCC-----------CCceEEECCEEhhhcCHHHHH----hhceEE
Confidence 689999999 889999999999999999999999876 899999999998776654332 234555
Q ss_pred ccccccccc--hhHHHHHHhcCChHHHHHHHHHHHHHccC-------------ccccccCcccccceecccee-------
Q 018394 88 RQVIAVSKS--SDIVLMVLDASKSEGHRQILTKELEAVGL-------------RLNKRPPQIYFKKKKTGGIS------- 145 (356)
Q Consensus 88 ~~~~~~~~~--~d~i~~v~d~~~~~~~~~~i~~~L~~~~i-------------~l~~~~~~lS~g~~qr~~ia------- 145 (356)
.|....+.. .+++.+. .....+.+.+.+.++..++ .+...-..||+||+||+++|
T Consensus 423 ~Q~~~lf~~Ti~~Ni~~~---~~~~~~~~~i~~al~~~~l~~~i~~lp~Gldt~ig~~g~~LSGGqrQRi~LARall~~~ 499 (582)
T PRK11176 423 SQNVHLFNDTIANNIAYA---RTEQYSREQIEEAARMAYAMDFINKMDNGLDTVIGENGVLLSGGQRQRIAIARALLRDS 499 (582)
T ss_pred ccCceeecchHHHHHhcC---CCCCCCHHHHHHHHHHhCcHHHHHhcccccCceeCCCCCcCCHHHHHHHHHHHHHHhCC
Confidence 565554443 3333321 1111123345555555554 22233356999999999998
Q ss_pred --eeecCCCCCCCHHHHHHHHHHhc---ccCcEEEEccCCCHHHHHHHHhccccccceEEEeecCCCC
Q 018394 146 --FNSTLPLTHVDEKLCYQILHEYK---IHNAEVLFREDATVDDLIDVIEGNRKYMKCVYVYNKIDVI 208 (356)
Q Consensus 146 --l~~DEp~~~LD~~~~~~il~~l~---~~~~~i~~thd~~~~~~~~~i~~~~~~~p~i~v~NK~Dl~ 208 (356)
+++||||++||+++...+++.+. .+.|+|++||+.+.... .+.|+++++.-+.
T Consensus 500 ~ililDEptsaLD~~t~~~i~~~l~~~~~~~tvI~VtHr~~~~~~----------~D~Ii~l~~g~i~ 557 (582)
T PRK11176 500 PILILDEATSALDTESERAIQAALDELQKNRTSLVIAHRLSTIEK----------ADEILVVEDGEIV 557 (582)
T ss_pred CEEEEECccccCCHHHHHHHHHHHHHHhCCCEEEEEecchHHHHh----------CCEEEEEECCEEE
Confidence 99999999999998666655554 45699999999854332 4677888765443
No 260
>cd03289 ABCC_CFTR2 The CFTR subfamily domain 2. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=99.80 E-value=1.9e-19 Score=168.64 Aligned_cols=170 Identities=19% Similarity=0.138 Sum_probs=118.4
Q ss_pred CCCCeEEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCccccccccccccceEEEECCEeecccCccccccccccCcccc
Q 018394 8 AGEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRG 87 (356)
Q Consensus 8 ~~~s~~v~~~~g~~v~LvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~~D~pGl~~~~~~~~~~~ 87 (356)
+++||+|.+ |++++|+|+||+|||||+++|+|... ..|.|.++|.++.-++...++ ..+++.
T Consensus 21 ~~isl~I~~--Ge~~~IvG~nGsGKSTLl~~L~gl~~------------~~G~I~i~g~~i~~~~~~~lr----~~i~~v 82 (275)
T cd03289 21 ENISFSISP--GQRVGLLGRTGSGKSTLLSAFLRLLN------------TEGDIQIDGVSWNSVPLQKWR----KAFGVI 82 (275)
T ss_pred eceEEEEcC--CCEEEEECCCCCCHHHHHHHHhhhcC------------CCcEEEECCEEhhhCCHHHHh----hhEEEE
Confidence 689999999 88999999999999999999999963 369999999987644332221 233444
Q ss_pred ccccccccchhHHHHHHhcCChHHHHHHHHHHHHHccC--ccccccCc-----------ccccceecccee---------
Q 018394 88 RQVIAVSKSSDIVLMVLDASKSEGHRQILTKELEAVGL--RLNKRPPQ-----------IYFKKKKTGGIS--------- 145 (356)
Q Consensus 88 ~~~~~~~~~~d~i~~v~d~~~~~~~~~~i~~~L~~~~i--~l~~~~~~-----------lS~g~~qr~~ia--------- 145 (356)
.|....+.. .+.-.+ +.... ...+.+.+.++.+++ .+++.+.. ||+||+||++++
T Consensus 83 ~q~~~lf~~-tv~~nl-~~~~~-~~~~~~~~~l~~~gL~~~~~~~p~~l~~~~~~~g~~LS~G~~qrl~LaRall~~p~i 159 (275)
T cd03289 83 PQKVFIFSG-TFRKNL-DPYGK-WSDEEIWKVAEEVGLKSVIEQFPGQLDFVLVDGGCVLSHGHKQLMCLARSVLSKAKI 159 (275)
T ss_pred CCCcccchh-hHHHHh-hhccC-CCHHHHHHHHHHcCCHHHHHhCcccccceecCCCCCCCHHHHHHHHHHHHHhcCCCE
Confidence 444433332 222222 21111 112456778888888 56666665 999999999998
Q ss_pred eeecCCCCCCCHHHHHH---HHHHhcccCcEEEEccCCCHHHHHHHHhccccccceEEEeecCCCC
Q 018394 146 FNSTLPLTHVDEKLCYQ---ILHEYKIHNAEVLFREDATVDDLIDVIEGNRKYMKCVYVYNKIDVI 208 (356)
Q Consensus 146 l~~DEp~~~LD~~~~~~---il~~l~~~~~~i~~thd~~~~~~~~~i~~~~~~~p~i~v~NK~Dl~ 208 (356)
+++||||++||+..... ++..+..+.++|++||+...... +..++++++.-+.
T Consensus 160 lllDEpts~LD~~~~~~l~~~l~~~~~~~tii~isH~~~~i~~----------~dri~vl~~G~i~ 215 (275)
T cd03289 160 LLLDEPSAHLDPITYQVIRKTLKQAFADCTVILSEHRIEAMLE----------CQRFLVIEENKVR 215 (275)
T ss_pred EEEECccccCCHHHHHHHHHHHHHhcCCCEEEEEECCHHHHHh----------CCEEEEecCCeEe
Confidence 99999999999988554 44444345699999999743221 3677888766554
No 261
>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.80 E-value=2.1e-19 Score=164.65 Aligned_cols=171 Identities=14% Similarity=0.112 Sum_probs=109.3
Q ss_pred CCCCeEEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCccccccccccccceEEEECCEeecccCccccccccccCcccc
Q 018394 8 AGEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRG 87 (356)
Q Consensus 8 ~~~s~~v~~~~g~~v~LvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~~D~pGl~~~~~~~~~~~ 87 (356)
.+++|++.+ |++++|+|+|||||||||++|+|...+ ..|.+.++|.++.-.+...+ ....++.
T Consensus 18 ~~i~~~i~~--Ge~~~l~G~nGsGKSTLl~~i~Gl~~~-----------~~G~v~~~g~~~~~~~~~~~----~~~i~~~ 80 (236)
T cd03253 18 KDVSFTIPA--GKKVAIVGPSGSGKSTILRLLFRFYDV-----------SSGSILIDGQDIREVTLDSL----RRAIGVV 80 (236)
T ss_pred eeeEEEEcC--CCEEEEECCCCCCHHHHHHHHhcccCC-----------CCCEEEECCEEhhhCCHHHH----HhhEEEE
Confidence 688999999 889999999999999999999999876 79999999987754332211 1122333
Q ss_pred ccccccccc--hhHHHHHHhcCChHHHHH------HHHHHHHHc--cC--ccccccCcccccceecccee---------e
Q 018394 88 RQVIAVSKS--SDIVLMVLDASKSEGHRQ------ILTKELEAV--GL--RLNKRPPQIYFKKKKTGGIS---------F 146 (356)
Q Consensus 88 ~~~~~~~~~--~d~i~~v~d~~~~~~~~~------~i~~~L~~~--~i--~l~~~~~~lS~g~~qr~~ia---------l 146 (356)
.+....+.. .+.+.+... ........ .+.+.++.+ ++ .+++++..||+|++||++++ +
T Consensus 81 ~q~~~~~~~tv~~nl~~~~~-~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~LS~G~~~rl~la~aL~~~p~ll 159 (236)
T cd03253 81 PQDTVLFNDTIGYNIRYGRP-DATDEEVIEAAKAAQIHDKIMRFPDGYDTIVGERGLKLSGGEKQRVAIARAILKNPPIL 159 (236)
T ss_pred CCCChhhcchHHHHHhhcCC-CCCHHHHHHHHHHcCcHHHHHhccccccchhhcCCCcCCHHHHHHHHHHHHHhcCCCEE
Confidence 333222221 222221110 01111100 112222332 22 34556789999999999998 9
Q ss_pred eecCCCCCCCHHHHHHHHH---HhcccCcEEEEccCCCHHHHHHHHhccccccceEEEeecCC
Q 018394 147 NSTLPLTHVDEKLCYQILH---EYKIHNAEVLFREDATVDDLIDVIEGNRKYMKCVYVYNKID 206 (356)
Q Consensus 147 ~~DEp~~~LD~~~~~~il~---~l~~~~~~i~~thd~~~~~~~~~i~~~~~~~p~i~v~NK~D 206 (356)
++||||++||+.....+++ .+..+.+++++||+...... +..+++++..-
T Consensus 160 llDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sh~~~~~~~----------~d~~~~l~~g~ 212 (236)
T cd03253 160 LLDEATSALDTHTEREIQAALRDVSKGRTTIVIAHRLSTIVN----------ADKIIVLKDGR 212 (236)
T ss_pred EEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEcCCHHHHHh----------CCEEEEEECCE
Confidence 9999999999988655544 44344589999999765432 25566666543
No 262
>PRK14240 phosphate transporter ATP-binding protein; Provisional
Probab=99.80 E-value=5.2e-19 Score=163.46 Aligned_cols=165 Identities=19% Similarity=0.162 Sum_probs=109.5
Q ss_pred CCCCeEEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCccccccccccccceEEEECCEeecccCccccccccccCcccc
Q 018394 8 AGEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRG 87 (356)
Q Consensus 8 ~~~s~~v~~~~g~~v~LvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~~D~pGl~~~~~~~~~~~ 87 (356)
.+++|++.+ |++++|+|+||||||||+++|+|...+- |. .+..|++.++|.++...+.+ . ......+++.
T Consensus 20 ~~vs~~i~~--Ge~~~i~G~nGsGKSTLl~~i~G~~~~~---~~---~~~~G~i~~~g~~~~~~~~~-~-~~~~~~i~~~ 89 (250)
T PRK14240 20 KKINLDIEE--NQVTALIGPSGCGKSTFLRTLNRMNDLI---PS---VKIEGEVLLDGQDIYKSDID-V-NQLRKRVGMV 89 (250)
T ss_pred ecceEEEcC--CCEEEEECCCCCCHHHHHHHHhcccccc---CC---CCCceEEEECCEEccccccc-h-HHHhccEEEE
Confidence 588999999 8899999999999999999999976420 00 12579999999876421111 0 0011223333
Q ss_pred ccccccc--cchhHHHHHHhcCC---hHHHHHHHHHHHHHccC------ccccccCcccccceecccee---------ee
Q 018394 88 RQVIAVS--KSSDIVLMVLDASK---SEGHRQILTKELEAVGL------RLNKRPPQIYFKKKKTGGIS---------FN 147 (356)
Q Consensus 88 ~~~~~~~--~~~d~i~~v~d~~~---~~~~~~~i~~~L~~~~i------~l~~~~~~lS~g~~qr~~ia---------l~ 147 (356)
.|....+ ...+.+.+...... .....+.+.+.++.+++ .+++++..||+||+||++++ ++
T Consensus 90 ~q~~~~~~~t~~~ni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~lll 169 (250)
T PRK14240 90 FQQPNPFPMSIYDNVAYGPRTHGIKDKKKLDEIVEKSLKGAALWDEVKDRLKKSALGLSGGQQQRLCIARALAVEPEVLL 169 (250)
T ss_pred ecCCccCcccHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCchhhHHHHhcCCCCCCHHHHHHHHHHHHHhcCCCEEE
Confidence 3332222 22344433221111 11234456777777765 34778899999999999998 99
Q ss_pred ecCCCCCCCHHHHHH---HHHHhcccCcEEEEccCCCH
Q 018394 148 STLPLTHVDEKLCYQ---ILHEYKIHNAEVLFREDATV 182 (356)
Q Consensus 148 ~DEp~~~LD~~~~~~---il~~l~~~~~~i~~thd~~~ 182 (356)
+||||++||+..... +|+.+..+.+++++||+...
T Consensus 170 lDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~ 207 (250)
T PRK14240 170 MDEPTSALDPISTLKIEELIQELKKDYTIVIVTHNMQQ 207 (250)
T ss_pred EeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEEeCHHH
Confidence 999999999988554 44455445689999999753
No 263
>PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional
Probab=99.80 E-value=4.9e-19 Score=164.14 Aligned_cols=176 Identities=18% Similarity=0.082 Sum_probs=116.8
Q ss_pred CCCCeEEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCccccccccccccceEEEECCEeecccCccccccccccCcccc
Q 018394 8 AGEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRG 87 (356)
Q Consensus 8 ~~~s~~v~~~~g~~v~LvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~~D~pGl~~~~~~~~~~~ 87 (356)
.++||++.+ |++++|+|+||||||||+++|+|...+.. .+..|.+.++|.++...+ . ....+++.
T Consensus 20 ~~vsl~i~~--Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~-------~~~~G~i~~~g~~i~~~~---~---~~~~i~~v 84 (254)
T PRK10418 20 HGVSLTLQR--GRVLALVGGSGSGKSLTCAAALGILPAGV-------RQTAGRVLLDGKPVAPCA---L---RGRKIATI 84 (254)
T ss_pred cceEEEEcC--CCEEEEECCCCCCHHHHHHHHhCCCCCCC-------CCcCCEEEECCeeccccc---c---ccceEEEE
Confidence 588999999 88999999999999999999999974310 126899999998764211 1 11123333
Q ss_pred ccccc-ccc-c---hhHHHHHHhcCChHHHHHHHHHHHHHccC-c----cccccCcccccceecccee---------eee
Q 018394 88 RQVIA-VSK-S---SDIVLMVLDASKSEGHRQILTKELEAVGL-R----LNKRPPQIYFKKKKTGGIS---------FNS 148 (356)
Q Consensus 88 ~~~~~-~~~-~---~d~i~~v~d~~~~~~~~~~i~~~L~~~~i-~----l~~~~~~lS~g~~qr~~ia---------l~~ 148 (356)
.|... .+. . .+.+.............+.+.+.++.+++ . +++.+..||+||+||+.|+ +++
T Consensus 85 ~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~LS~Gq~qrv~laral~~~p~lLlL 164 (254)
T PRK10418 85 MQNPRSAFNPLHTMHTHARETCLALGKPADDATLTAALEAVGLENAARVLKLYPFEMSGGMLQRMMIALALLCEAPFIIA 164 (254)
T ss_pred ecCCccccCccccHHHHHHHHHHHcCCChHHHHHHHHHHHcCCCChhhhhhcCCcccCHHHHHHHHHHHHHhcCCCEEEE
Confidence 33321 111 1 12222221111111233567888999998 2 5788899999999999998 999
Q ss_pred cCCCCCCCHHHHH---HHHHHhcc--cCcEEEEccCCCHHHHHHHHhccccccceEEEeecCCC
Q 018394 149 TLPLTHVDEKLCY---QILHEYKI--HNAEVLFREDATVDDLIDVIEGNRKYMKCVYVYNKIDV 207 (356)
Q Consensus 149 DEp~~~LD~~~~~---~il~~l~~--~~~~i~~thd~~~~~~~~~i~~~~~~~p~i~v~NK~Dl 207 (356)
||||++||..... ++|+.+.. +.+++++||+...... .+..++++++.-+
T Consensus 165 DEPt~~LD~~~~~~l~~~L~~~~~~~g~til~~sH~~~~~~~---------~~d~v~~l~~G~i 219 (254)
T PRK10418 165 DEPTTDLDVVAQARILDLLESIVQKRALGMLLVTHDMGVVAR---------LADDVAVMSHGRI 219 (254)
T ss_pred eCCCcccCHHHHHHHHHHHHHHHHhcCcEEEEEecCHHHHHH---------hCCEEEEEECCEE
Confidence 9999999998754 44555532 4589999998754321 1355666665444
No 264
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=99.80 E-value=4.9e-19 Score=179.81 Aligned_cols=160 Identities=16% Similarity=0.098 Sum_probs=111.3
Q ss_pred CCCCeEEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCccccccccccccceEEEECCEeecccCccccccccccCcccc
Q 018394 8 AGEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRG 87 (356)
Q Consensus 8 ~~~s~~v~~~~g~~v~LvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~~D~pGl~~~~~~~~~~~ 87 (356)
.+++|++.+ |++++|+|+|||||||||++|+|...| ..|.|.++|.++.-.+.... ...++++.
T Consensus 280 ~~isl~i~~--Ge~~~l~G~NGsGKSTLl~~i~Gl~~p-----------~~G~i~~~g~~i~~~~~~~~---~~~~i~~v 343 (510)
T PRK15439 280 RNISLEVRA--GEILGLAGVVGAGRTELAETLYGLRPA-----------RGGRIMLNGKEINALSTAQR---LARGLVYL 343 (510)
T ss_pred cceeEEEcC--CcEEEEECCCCCCHHHHHHHHcCCCCC-----------CCcEEEECCEECCCCCHHHH---HhCCcEEC
Confidence 578999999 889999999999999999999999876 78999999987643221100 11233333
Q ss_pred cccc---cccc---chhHHHHH-Hh---c-CChHHHHHHHHHHHHHccC---ccccccCcccccceecccee--------
Q 018394 88 RQVI---AVSK---SSDIVLMV-LD---A-SKSEGHRQILTKELEAVGL---RLNKRPPQIYFKKKKTGGIS-------- 145 (356)
Q Consensus 88 ~~~~---~~~~---~~d~i~~v-~d---~-~~~~~~~~~i~~~L~~~~i---~l~~~~~~lS~g~~qr~~ia-------- 145 (356)
.|.. ..+. ..+.+... .. . .......+.+.++|+.+++ .+++++..||+||+||+.||
T Consensus 344 ~q~~~~~~l~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~kqrl~la~al~~~p~ 423 (510)
T PRK15439 344 PEDRQSSGLYLDAPLAWNVCALTHNRRGFWIKPARENAVLERYRRALNIKFNHAEQAARTLSGGNQQKVLIAKCLEASPQ 423 (510)
T ss_pred CCChhhCCccCCCcHHHHHHhhhhhhhccccChHHHHHHHHHHHHHcCCCCCCccCccccCCcHHHHHHHHHHHHhhCCC
Confidence 3321 1121 12333211 00 0 0112233457788999998 36788999999999999988
Q ss_pred -eeecCCCCCCCHHHHHHH---HHHhcc-cCcEEEEccCCCHH
Q 018394 146 -FNSTLPLTHVDEKLCYQI---LHEYKI-HNAEVLFREDATVD 183 (356)
Q Consensus 146 -l~~DEp~~~LD~~~~~~i---l~~l~~-~~~~i~~thd~~~~ 183 (356)
+++||||++||+.....+ ++.+.. +.++|++|||....
T Consensus 424 lLlLDEPt~gLD~~~~~~l~~~l~~l~~~g~tiIivsHd~~~i 466 (510)
T PRK15439 424 LLIVDEPTRGVDVSARNDIYQLIRSIAAQNVAVLFISSDLEEI 466 (510)
T ss_pred EEEECCCCcCcChhHHHHHHHHHHHHHhCCCEEEEECCCHHHH
Confidence 999999999999886554 444433 45899999997654
No 265
>cd03290 ABCC_SUR1_N The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=99.80 E-value=3.9e-19 Score=160.99 Aligned_cols=157 Identities=12% Similarity=0.124 Sum_probs=103.5
Q ss_pred CCCCeEEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCccccccccccccceEEEECCEeecccCccccccccccCcccc
Q 018394 8 AGEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRG 87 (356)
Q Consensus 8 ~~~s~~v~~~~g~~v~LvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~~D~pGl~~~~~~~~~~~ 87 (356)
++++|++.+ |++++|+|+|||||||||++|+|...+ ..|.+.++|.++...+..-........+++.
T Consensus 18 ~~vs~~i~~--Ge~~~i~G~nGsGKSTLl~~i~G~~~~-----------~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~ 84 (218)
T cd03290 18 SNINIRIPT--GQLTMIVGQVGCGKSSLLLAILGEMQT-----------LEGKVHWSNKNESEPSFEATRSRNRYSVAYA 84 (218)
T ss_pred eeeEEEEcC--CCEEEEECCCCCCHHHHHHHHhccCCC-----------CCCeEEECCcccccccccccchhhcceEEEE
Confidence 688999999 889999999999999999999999866 7899999998765322100000011223344
Q ss_pred cccccccc--chhHHHHHHhcCChHHHHHHHHHHHHHccC--c-----------cccccCcccccceecccee-------
Q 018394 88 RQVIAVSK--SSDIVLMVLDASKSEGHRQILTKELEAVGL--R-----------LNKRPPQIYFKKKKTGGIS------- 145 (356)
Q Consensus 88 ~~~~~~~~--~~d~i~~v~d~~~~~~~~~~i~~~L~~~~i--~-----------l~~~~~~lS~g~~qr~~ia------- 145 (356)
.|....+. ..+.+.+... .. .....+.++.+++ . ++.++..||+||+||++||
T Consensus 85 ~q~~~~~~~t~~~nl~~~~~-~~----~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p 159 (218)
T cd03290 85 AQKPWLLNATVEENITFGSP-FN----KQRYKAVTDACSLQPDIDLLPFGDQTEIGERGINLSGGQRQRICVARALYQNT 159 (218)
T ss_pred cCCCccccccHHHHHhhcCc-CC----HHHHHHHHHHhCcHHHHHhCcCccccCcccCCCcCCHHHHHHHHHHHHHhhCC
Confidence 44333221 1233222111 11 1122334444444 1 2456789999999999998
Q ss_pred --eeecCCCCCCCHHHHHHHHH-----Hhcc-cCcEEEEccCCCH
Q 018394 146 --FNSTLPLTHVDEKLCYQILH-----EYKI-HNAEVLFREDATV 182 (356)
Q Consensus 146 --l~~DEp~~~LD~~~~~~il~-----~l~~-~~~~i~~thd~~~ 182 (356)
+++||||++||+.....+++ .+.. +.+++++||+.+.
T Consensus 160 ~illlDEPt~~LD~~~~~~l~~~~ll~~~~~~~~tii~~sH~~~~ 204 (218)
T cd03290 160 NIVFLDDPFSALDIHLSDHLMQEGILKFLQDDKRTLVLVTHKLQY 204 (218)
T ss_pred CEEEEeCCccccCHHHHHHHHHHHHHHHHhcCCCEEEEEeCChHH
Confidence 99999999999987655443 4443 4589999999764
No 266
>PRK14253 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.80 E-value=5.4e-19 Score=163.25 Aligned_cols=179 Identities=16% Similarity=0.069 Sum_probs=116.8
Q ss_pred CCCCeEEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCccccccccccccceEEEECCEeecccCccccccccccCcccc
Q 018394 8 AGEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRG 87 (356)
Q Consensus 8 ~~~s~~v~~~~g~~v~LvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~~D~pGl~~~~~~~~~~~ 87 (356)
+++||++.+ |++++|+|+||||||||+++|+|...+.. + .|..|.+.++|.++.....+. .....+++.
T Consensus 20 ~~vs~~i~~--Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~---~---~~~~G~v~~~g~~~~~~~~~~---~~~~~i~~~ 88 (249)
T PRK14253 20 KSINLPIPA--RQVTALIGPSGCGKSTLLRCLNRMNDLIE---G---VKITGKLTMDGEDIYGNIDVA---DLRIKVGMV 88 (249)
T ss_pred ecceEEecC--CCEEEEECCCCCCHHHHHHHHHhhccccc---C---CCCceEEEECCEEcccccchH---HHHhheeEE
Confidence 689999999 88999999999999999999999875410 0 025799999998763211111 111233444
Q ss_pred ccccccc--cchhHHHHHHhcCC---hHHHHHHHHHHHHHccC------ccccccCcccccceecccee---------ee
Q 018394 88 RQVIAVS--KSSDIVLMVLDASK---SEGHRQILTKELEAVGL------RLNKRPPQIYFKKKKTGGIS---------FN 147 (356)
Q Consensus 88 ~~~~~~~--~~~d~i~~v~d~~~---~~~~~~~i~~~L~~~~i------~l~~~~~~lS~g~~qr~~ia---------l~ 147 (356)
.|....+ ...+.+.+...... .....+.+.+.++.+++ .+++++..||+|++||+.|+ ++
T Consensus 89 ~q~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~lll 168 (249)
T PRK14253 89 FQKPNPFPMSIYENVAYGLRAQGIKDKKVLDEVVERSLRGAALWDEVKDRLKSHAFGLSGGQQQRLCIARTIAMEPDVIL 168 (249)
T ss_pred ecCCCcCcccHHHHHHhHHHhcCCCchHHHHHHHHHHHHHcCCchhhhHHhhcCcccCCHHHHHHHHHHHHHHcCCCEEE
Confidence 4433222 22444443322211 11122345666777765 35677889999999999998 99
Q ss_pred ecCCCCCCCHHHHH---HHHHHhcccCcEEEEccCCCHHHHHHHHhccccccceEEEeecCC
Q 018394 148 STLPLTHVDEKLCY---QILHEYKIHNAEVLFREDATVDDLIDVIEGNRKYMKCVYVYNKID 206 (356)
Q Consensus 148 ~DEp~~~LD~~~~~---~il~~l~~~~~~i~~thd~~~~~~~~~i~~~~~~~p~i~v~NK~D 206 (356)
+||||++||+.... ++++++....+++++||+...... .+..+++++..-
T Consensus 169 lDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~---------~~d~i~~l~~G~ 221 (249)
T PRK14253 169 MDEPTSALDPIATHKIEELMEELKKNYTIVIVTHSMQQARR---------ISDRTAFFLMGE 221 (249)
T ss_pred EeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHH---------hCCEEEEEECCE
Confidence 99999999998754 455555445699999998654221 135566666543
No 267
>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=99.80 E-value=2.9e-19 Score=162.07 Aligned_cols=155 Identities=17% Similarity=0.119 Sum_probs=103.8
Q ss_pred CCCCeEEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCccccccccccccceEEEECCEeecccCccccccccccCcccc
Q 018394 8 AGEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRG 87 (356)
Q Consensus 8 ~~~s~~v~~~~g~~v~LvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~~D~pGl~~~~~~~~~~~ 87 (356)
.++||++.+ |+.++|+|+||||||||+++|+|...+ ..|.+.++|.++.-.+...+ ...+++.
T Consensus 21 ~~i~~~i~~--Ge~~~i~G~nGsGKSTLl~~l~G~~~~-----------~~G~i~~~g~~~~~~~~~~~----~~~i~~~ 83 (221)
T cd03244 21 KNISFSIKP--GEKVGIVGRTGSGKSSLLLALFRLVEL-----------SSGSILIDGVDISKIGLHDL----RSRISII 83 (221)
T ss_pred cceEEEECC--CCEEEEECCCCCCHHHHHHHHHcCCCC-----------CCCEEEECCEEhHhCCHHHH----hhhEEEE
Confidence 689999999 889999999999999999999999876 78999999987653221111 1223333
Q ss_pred ccccccccchhHHHHHHhcCChHHHHHHHHHHHHHccC-------------ccccccCcccccceecccee---------
Q 018394 88 RQVIAVSKSSDIVLMVLDASKSEGHRQILTKELEAVGL-------------RLNKRPPQIYFKKKKTGGIS--------- 145 (356)
Q Consensus 88 ~~~~~~~~~~d~i~~v~d~~~~~~~~~~i~~~L~~~~i-------------~l~~~~~~lS~g~~qr~~ia--------- 145 (356)
.|....+.. .+...+ ..... ...+.+.+.++.+++ .+++.+..||+||+||++++
T Consensus 84 ~q~~~l~~~-tv~enl-~~~~~-~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~LS~G~~qr~~laral~~~p~l 160 (221)
T cd03244 84 PQDPVLFSG-TIRSNL-DPFGE-YSDEELWQALERVGLKEFVESLPGGLDTVVEEGGENLSVGQRQLLCLARALLRKSKI 160 (221)
T ss_pred CCCCccccc-hHHHHh-CcCCC-CCHHHHHHHHHHhCcHHHHHhcccccccccccCCCcCCHHHHHHHHHHHHHhcCCCE
Confidence 333322221 111111 11111 111234444555544 22467889999999999988
Q ss_pred eeecCCCCCCCHHHHHHH---HHHhcccCcEEEEccCCCH
Q 018394 146 FNSTLPLTHVDEKLCYQI---LHEYKIHNAEVLFREDATV 182 (356)
Q Consensus 146 l~~DEp~~~LD~~~~~~i---l~~l~~~~~~i~~thd~~~ 182 (356)
+++||||++||+.....+ |+.+....+++++||+...
T Consensus 161 lllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~ 200 (221)
T cd03244 161 LVLDEATASVDPETDALIQKTIREAFKDCTVLTIAHRLDT 200 (221)
T ss_pred EEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHH
Confidence 899999999999885544 4444445689999999754
No 268
>PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=99.80 E-value=2.4e-19 Score=185.21 Aligned_cols=169 Identities=18% Similarity=0.167 Sum_probs=123.7
Q ss_pred CCCCeEEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCccccccccccccceEEEECCEeecccCccccccccccCcccc
Q 018394 8 AGEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRG 87 (356)
Q Consensus 8 ~~~s~~v~~~~g~~v~LvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~~D~pGl~~~~~~~~~~~ 87 (356)
++++|++++ |+.++|+|++|||||||+++|+|...| ..|.|.++|.++..+|...++ ..+++.
T Consensus 358 ~~i~l~i~~--Ge~iaIvG~SGsGKSTLl~lL~gl~~p-----------~~G~I~idg~~i~~~~~~~l~----~~i~~v 420 (592)
T PRK10790 358 QNINLSVPS--RGFVALVGHTGSGKSTLASLLMGYYPL-----------TEGEIRLDGRPLSSLSHSVLR----QGVAMV 420 (592)
T ss_pred eceeEEEcC--CCEEEEECCCCCCHHHHHHHHhcccCC-----------CCceEEECCEEhhhCCHHHHH----hheEEE
Confidence 689999999 889999999999999999999999877 899999999999877755443 234556
Q ss_pred ccccccccc--hhHHHHHHhcCChHHHHHHHHHHHHHccC--cc-----------ccccCcccccceecccee-------
Q 018394 88 RQVIAVSKS--SDIVLMVLDASKSEGHRQILTKELEAVGL--RL-----------NKRPPQIYFKKKKTGGIS------- 145 (356)
Q Consensus 88 ~~~~~~~~~--~d~i~~v~d~~~~~~~~~~i~~~L~~~~i--~l-----------~~~~~~lS~g~~qr~~ia------- 145 (356)
.|....+.. .|++.+. .+ .+.+.+.+.++.+|+ .+ ......||+||+||+++|
T Consensus 421 ~Q~~~lF~~Ti~~NI~~~----~~-~~d~~i~~a~~~~gl~~~i~~lp~Gldt~i~e~g~~LSGGqrQRialARaLl~~~ 495 (592)
T PRK10790 421 QQDPVVLADTFLANVTLG----RD-ISEEQVWQALETVQLAELARSLPDGLYTPLGEQGNNLSVGQKQLLALARVLVQTP 495 (592)
T ss_pred ccCCccccchHHHHHHhC----CC-CCHHHHHHHHHHcCcHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHHhCC
Confidence 666655554 3444332 11 122345666666665 12 223457999999999998
Q ss_pred --eeecCCCCCCCHHHHHHHHHHhc---ccCcEEEEccCCCHHHHHHHHhccccccceEEEeecCCCC
Q 018394 146 --FNSTLPLTHVDEKLCYQILHEYK---IHNAEVLFREDATVDDLIDVIEGNRKYMKCVYVYNKIDVI 208 (356)
Q Consensus 146 --l~~DEp~~~LD~~~~~~il~~l~---~~~~~i~~thd~~~~~~~~~i~~~~~~~p~i~v~NK~Dl~ 208 (356)
+++||||++||+++...+.+.+. ...|+|++||+...... .+.|+++++..+.
T Consensus 496 ~illlDEpts~LD~~t~~~i~~~l~~~~~~~tvIivtHr~~~l~~----------~D~ii~l~~G~i~ 553 (592)
T PRK10790 496 QILILDEATANIDSGTEQAIQQALAAVREHTTLVVIAHRLSTIVE----------ADTILVLHRGQAV 553 (592)
T ss_pred CEEEEeCCcccCCHHHHHHHHHHHHHHhCCCEEEEEecchHHHHh----------CCEEEEEECCEEE
Confidence 99999999999998666555443 45799999999744322 3677788766544
No 269
>PRK15056 manganese/iron transporter ATP-binding protein; Provisional
Probab=99.80 E-value=2.7e-19 Score=167.56 Aligned_cols=155 Identities=22% Similarity=0.172 Sum_probs=107.2
Q ss_pred CCCCeEEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCccccccccccccceEEEECCEeecccCccccccccccCcccc
Q 018394 8 AGEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRG 87 (356)
Q Consensus 8 ~~~s~~v~~~~g~~v~LvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~~D~pGl~~~~~~~~~~~ 87 (356)
.++||++.+ |++++|+|+||||||||+++|+|...| ..|.+.++|.++... . ....+++.
T Consensus 24 ~~vsl~i~~--Ge~~~l~G~nGsGKSTLl~~l~Gl~~p-----------~~G~i~~~g~~i~~~----~---~~~~i~~v 83 (272)
T PRK15056 24 RDASFTVPG--GSIAALVGVNGSGKSTLFKALMGFVRL-----------ASGKISILGQPTRQA----L---QKNLVAYV 83 (272)
T ss_pred EeeEEEEcC--CCEEEEECCCCCCHHHHHHHHhCCCCC-----------CceEEEECCEEhHHh----h---ccceEEEe
Confidence 588999999 889999999999999999999999866 789999999876310 0 00112222
Q ss_pred cccccc---c--cchhHHHHHH-h---c--CChHHHHHHHHHHHHHccC--ccccccCcccccceecccee---------
Q 018394 88 RQVIAV---S--KSSDIVLMVL-D---A--SKSEGHRQILTKELEAVGL--RLNKRPPQIYFKKKKTGGIS--------- 145 (356)
Q Consensus 88 ~~~~~~---~--~~~d~i~~v~-d---~--~~~~~~~~~i~~~L~~~~i--~l~~~~~~lS~g~~qr~~ia--------- 145 (356)
.|.... . ...+.+.+.. . . .......+.+.+.++.+++ .+++++..||+|++||++++
T Consensus 84 ~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qrv~laraL~~~p~l 163 (272)
T PRK15056 84 PQSEEVDWSFPVLVEDVVMMGRYGHMGWLRRAKKRDRQIVTAALARVDMVEFRHRQIGELSGGQKKRVFLARAIAQQGQV 163 (272)
T ss_pred ccccccccCCCcchhhheecccccccccccCCCHHHHHHHHHHHHHcCChhHhcCCcccCCHHHHHHHHHHHHHhcCCCE
Confidence 222110 0 0112211100 0 0 0112234456778899998 67889999999999999988
Q ss_pred eeecCCCCCCCHHHHHH---HHHHhcc-cCcEEEEccCCCH
Q 018394 146 FNSTLPLTHVDEKLCYQ---ILHEYKI-HNAEVLFREDATV 182 (356)
Q Consensus 146 l~~DEp~~~LD~~~~~~---il~~l~~-~~~~i~~thd~~~ 182 (356)
+++||||++||+..... +|..+.. +.+++++||+.+.
T Consensus 164 lllDEPt~~LD~~~~~~l~~~L~~~~~~g~tviivsH~~~~ 204 (272)
T PRK15056 164 ILLDEPFTGVDVKTEARIISLLRELRDEGKTMLVSTHNLGS 204 (272)
T ss_pred EEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHH
Confidence 99999999999987554 4445443 4589999999754
No 270
>PRK14271 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.80 E-value=6.4e-19 Score=165.37 Aligned_cols=179 Identities=15% Similarity=0.130 Sum_probs=118.0
Q ss_pred CCCCeEEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCccccccccccccceEEEECCEeeccc-CccccccccccCccc
Q 018394 8 AGEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLL-DLPGIIEGASEGKGR 86 (356)
Q Consensus 8 ~~~s~~v~~~~g~~v~LvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~~-D~pGl~~~~~~~~~~ 86 (356)
.+++|++.+ |++++|+|+||||||||+++|+|...+.+.. |..|.+.++|.++.-. +.+.+ ...+++
T Consensus 38 ~~vs~~i~~--Ge~~~I~G~nGsGKSTLl~~l~Gl~~p~~~~------~~~G~i~~~g~~i~~~~~~~~~----~~~i~~ 105 (276)
T PRK14271 38 DQVSMGFPA--RAVTSLMGPTGSGKTTFLRTLNRMNDKVSGY------RYSGDVLLGGRSIFNYRDVLEF----RRRVGM 105 (276)
T ss_pred eeeEEEEcC--CcEEEEECCCCCCHHHHHHHHhccCCcCCCC------CCceEEEECCEEccccchhHHH----hhheEE
Confidence 588999999 8899999999999999999999987541110 3689999999876422 11111 122333
Q ss_pred cccccccc--cchhHHHHHHhcC---ChHHHHHHHHHHHHHccCc------cccccCcccccceecccee---------e
Q 018394 87 GRQVIAVS--KSSDIVLMVLDAS---KSEGHRQILTKELEAVGLR------LNKRPPQIYFKKKKTGGIS---------F 146 (356)
Q Consensus 87 ~~~~~~~~--~~~d~i~~v~d~~---~~~~~~~~i~~~L~~~~i~------l~~~~~~lS~g~~qr~~ia---------l 146 (356)
..|....+ ...+.+.+..... ........+.+.++.+++. +++.+..||+||+||+.|| +
T Consensus 106 v~q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~l~~~~~~LSgGq~qrl~LAral~~~p~ll 185 (276)
T PRK14271 106 LFQRPNPFPMSIMDNVLAGVRAHKLVPRKEFRGVAQARLTEVGLWDAVKDRLSDSPFRLSGGQQQLLCLARTLAVNPEVL 185 (276)
T ss_pred eccCCccCCccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCCchhhhHhhCCcccCCHHHHHHHHHHHHHhcCCCEE
Confidence 34332222 2234443322211 1112223456677888872 4677899999999999998 9
Q ss_pred eecCCCCCCCHHHHHHH---HHHhcccCcEEEEccCCCHHHHHHHHhccccccceEEEeecCCC
Q 018394 147 NSTLPLTHVDEKLCYQI---LHEYKIHNAEVLFREDATVDDLIDVIEGNRKYMKCVYVYNKIDV 207 (356)
Q Consensus 147 ~~DEp~~~LD~~~~~~i---l~~l~~~~~~i~~thd~~~~~~~~~i~~~~~~~p~i~v~NK~Dl 207 (356)
++||||++||......+ |.++....++|++||+...... .+..+++++..-+
T Consensus 186 lLDEPt~~LD~~~~~~l~~~L~~~~~~~tiiivsH~~~~~~~---------~~dri~~l~~G~i 240 (276)
T PRK14271 186 LLDEPTSALDPTTTEKIEEFIRSLADRLTVIIVTHNLAQAAR---------ISDRAALFFDGRL 240 (276)
T ss_pred EEcCCcccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHH---------hCCEEEEEECCEE
Confidence 99999999999885544 4444444699999999754221 2356777765543
No 271
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=99.80 E-value=4e-19 Score=180.94 Aligned_cols=163 Identities=19% Similarity=0.176 Sum_probs=111.3
Q ss_pred CCCCeEEEecCCcEEEEEcCCCCcHHHHHHHHHcCC--CCccccccccccccceEEEECC--------------------
Q 018394 8 AGEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTH--SEAASYEFTTLTCIPGIIHYND-------------------- 65 (356)
Q Consensus 8 ~~~s~~v~~~~g~~v~LvG~~gaGKSTLln~L~g~~--~~vs~~p~TT~~~~~G~i~~~g-------------------- 65 (356)
.++||++.+ |++++|+|+||||||||+++|+|.. .+ ..|.|.+++
T Consensus 17 ~~is~~i~~--Ge~~~iiG~nGsGKSTLl~~l~Gl~~~~p-----------~~G~i~~~~~~~~~~~~~~~~~~~g~~~~ 83 (520)
T TIGR03269 17 KNISFTIEE--GEVLGILGRSGAGKSVLMHVLRGMDQYEP-----------TSGRIIYHVALCEKCGYVERPSKVGEPCP 83 (520)
T ss_pred eceeEEEcC--CCEEEEECCCCCCHHHHHHHHhhcccCCC-----------CceEEEEeccccccccccccccccccccc
Confidence 589999999 8899999999999999999999986 34 689998862
Q ss_pred ---Eeecc--cCcccc----ccccccCccccccc-cccc---cchhHHHHHHhcC--ChHHHHHHHHHHHHHccC--ccc
Q 018394 66 ---TKIQL--LDLPGI----IEGASEGKGRGRQV-IAVS---KSSDIVLMVLDAS--KSEGHRQILTKELEAVGL--RLN 128 (356)
Q Consensus 66 ---~~i~~--~D~pGl----~~~~~~~~~~~~~~-~~~~---~~~d~i~~v~d~~--~~~~~~~~i~~~L~~~~i--~l~ 128 (356)
.++.. .|.... .......+++..|. ...+ ...+.+.+..... ......+++.+.|+.+++ .++
T Consensus 84 ~~g~~~~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~ 163 (520)
T TIGR03269 84 VCGGTLEPEEVDFWNLSDKLRRRIRKRIAIMLQRTFALYGDDTVLDNVLEALEEIGYEGKEAVGRAVDLIEMVQLSHRIT 163 (520)
T ss_pred cccccccccchhhhccCHHHHHHhhhcEEEEeccccccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhh
Confidence 11110 111000 00011223444442 2222 2245554433221 222334567889999999 678
Q ss_pred cccCcccccceecccee---------eeecCCCCCCCHHHHHHH---HHHhcc--cCcEEEEccCCCHH
Q 018394 129 KRPPQIYFKKKKTGGIS---------FNSTLPLTHVDEKLCYQI---LHEYKI--HNAEVLFREDATVD 183 (356)
Q Consensus 129 ~~~~~lS~g~~qr~~ia---------l~~DEp~~~LD~~~~~~i---l~~l~~--~~~~i~~thd~~~~ 183 (356)
+++.+||+||+||+.|| +++||||++||+.....+ |+.+.. +.++|++|||....
T Consensus 164 ~~~~~LSgGq~qrv~iA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~ 232 (520)
T TIGR03269 164 HIARDLSGGEKQRVVLARQLAKEPFLFLADEPTGTLDPQTAKLVHNALEEAVKASGISMVLTSHWPEVI 232 (520)
T ss_pred cCcccCCHHHHHHHHHHHHHhcCCCEEEeeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHH
Confidence 88999999999999998 999999999999986655 445432 45899999997654
No 272
>PRK14238 phosphate transporter ATP-binding protein; Provisional
Probab=99.80 E-value=5e-19 Score=165.65 Aligned_cols=181 Identities=17% Similarity=0.105 Sum_probs=115.5
Q ss_pred CCCCeEEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCccccccccccccceEEEECCEeecccCccccccccccCcccc
Q 018394 8 AGEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRG 87 (356)
Q Consensus 8 ~~~s~~v~~~~g~~v~LvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~~D~pGl~~~~~~~~~~~ 87 (356)
++++|++.+ |++++|+|+||||||||+++|+|...+.- ..|..|.+.++|.++...+.+. ......+++.
T Consensus 41 ~~vsl~i~~--Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~------~~~~~G~i~~~g~~~~~~~~~~--~~~~~~i~~v 110 (271)
T PRK14238 41 KNINLDIHE--NEVTAIIGPSGCGKSTYIKTLNRMVELVP------SVKTTGKILYRDQNIFDKSYSV--EELRTNVGMV 110 (271)
T ss_pred eeeEEEEcC--CCEEEEECCCCCCHHHHHHHHHhhccCCC------CCCCceeEEECCEEcccccccH--HHHhhhEEEE
Confidence 588999999 88999999999999999999999864100 0126899999998764211110 0011223333
Q ss_pred ccccccc--cchhHHHHHHhcCC--hH-HHHHHHHHHHHHcc----C--ccccccCcccccceecccee---------ee
Q 018394 88 RQVIAVS--KSSDIVLMVLDASK--SE-GHRQILTKELEAVG----L--RLNKRPPQIYFKKKKTGGIS---------FN 147 (356)
Q Consensus 88 ~~~~~~~--~~~d~i~~v~d~~~--~~-~~~~~i~~~L~~~~----i--~l~~~~~~lS~g~~qr~~ia---------l~ 147 (356)
.|....+ ...+.+.+...... .. .....+.+.++.++ + .+++++..||+|++||++++ ++
T Consensus 111 ~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~~LSgGe~qrv~laraL~~~p~lll 190 (271)
T PRK14238 111 FQKPNPFPKSIYDNVTYGPKIHGIKDKKTLDEIVEKSLRGAAIWDELKDRLHDNAYGLSGGQQQRLCIARCLAIEPDVIL 190 (271)
T ss_pred ecCCccccccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCcchHHHHHhcCcccCCHHHHHHHHHHHHHHcCCCEEE
Confidence 3332222 22344433222111 11 11234555666653 3 46778899999999999998 99
Q ss_pred ecCCCCCCCHHHHHHH---HHHhcccCcEEEEccCCCHHHHHHHHhccccccceEEEeecCCC
Q 018394 148 STLPLTHVDEKLCYQI---LHEYKIHNAEVLFREDATVDDLIDVIEGNRKYMKCVYVYNKIDV 207 (356)
Q Consensus 148 ~DEp~~~LD~~~~~~i---l~~l~~~~~~i~~thd~~~~~~~~~i~~~~~~~p~i~v~NK~Dl 207 (356)
+||||++||+.....+ |..+....+++++||+...... .+..+++++..-+
T Consensus 191 LDEPt~~LD~~~~~~l~~~l~~~~~~~tiiivsH~~~~i~~---------~~d~i~~l~~G~i 244 (271)
T PRK14238 191 MDEPTSALDPISTLKVEELVQELKKDYSIIIVTHNMQQAAR---------ISDKTAFFLNGYV 244 (271)
T ss_pred EeCCCCcCCHHHHHHHHHHHHHHHcCCEEEEEEcCHHHHHH---------hCCEEEEEECCEE
Confidence 9999999999985554 4444445689999999764321 2355666665433
No 273
>PRK14260 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.80 E-value=7.6e-19 Score=163.32 Aligned_cols=166 Identities=16% Similarity=0.170 Sum_probs=110.6
Q ss_pred CCCCeEEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCccccccccccccceEEEECCEeecccCccccccccccCcccc
Q 018394 8 AGEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRG 87 (356)
Q Consensus 8 ~~~s~~v~~~~g~~v~LvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~~D~pGl~~~~~~~~~~~ 87 (356)
++++|++.+ |++++|+|+||||||||+++|+|...+-. |. ...|.+.++|.++...+.. . ......+++.
T Consensus 24 ~~isl~i~~--Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~~--~~----~~~G~i~~~g~~i~~~~~~-~-~~~~~~i~~v 93 (259)
T PRK14260 24 EGISMDIYR--NKVTAIIGPSGCGKSTFIKTLNRISELEG--PV----KVEGVVDFFGQNIYDPRIN-I-NRLRRQIGMV 93 (259)
T ss_pred cceEEEEcC--CCEEEEECCCCCCHHHHHHHHHhhcCccc--CC----ccceEEEECCEeccccccc-h-HhhhhheEEE
Confidence 689999999 88999999999999999999999865300 00 0379999999876421110 0 0111223443
Q ss_pred ccccccc--cchhHHHHHHhcC---ChHHHHHHHHHHHHHccC------ccccccCcccccceecccee---------ee
Q 018394 88 RQVIAVS--KSSDIVLMVLDAS---KSEGHRQILTKELEAVGL------RLNKRPPQIYFKKKKTGGIS---------FN 147 (356)
Q Consensus 88 ~~~~~~~--~~~d~i~~v~d~~---~~~~~~~~i~~~L~~~~i------~l~~~~~~lS~g~~qr~~ia---------l~ 147 (356)
.|....+ ...+.+.+..... ......+.+.+.++.+++ .+++.+..||+|++||++|| ++
T Consensus 94 ~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~lll 173 (259)
T PRK14260 94 FQRPNPFPMSIYENVAYGVRISAKLPQADLDEIVESALKGAALWQEVKDKLNKSALGLSGGQQQRLCIARALAIKPKVLL 173 (259)
T ss_pred ecccccCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCcchhhhHhcCCcccCCHHHHHHHHHHHHHhcCCCEEE
Confidence 4433222 2234443322211 112233456777888776 36778899999999999998 99
Q ss_pred ecCCCCCCCHHHHHH---HHHHhcccCcEEEEccCCCHH
Q 018394 148 STLPLTHVDEKLCYQ---ILHEYKIHNAEVLFREDATVD 183 (356)
Q Consensus 148 ~DEp~~~LD~~~~~~---il~~l~~~~~~i~~thd~~~~ 183 (356)
+||||++||+..... ++..+....+++++||+.+..
T Consensus 174 LDEPt~~LD~~~~~~l~~~l~~~~~~~tiii~tH~~~~i 212 (259)
T PRK14260 174 MDEPCSALDPIATMKVEELIHSLRSELTIAIVTHNMQQA 212 (259)
T ss_pred EcCCCccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHH
Confidence 999999999987544 444444446999999997643
No 274
>TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein. This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin.
Probab=99.80 E-value=1.9e-19 Score=189.77 Aligned_cols=170 Identities=14% Similarity=0.092 Sum_probs=123.6
Q ss_pred CCCCeEEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCccccccccccccceEEEECCEeecccCccccccccccCcccc
Q 018394 8 AGEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRG 87 (356)
Q Consensus 8 ~~~s~~v~~~~g~~v~LvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~~D~pGl~~~~~~~~~~~ 87 (356)
+++||++++ |+.+||+|++|||||||+++|+|...| .+|.|.++|.++..+|...++ ..++..
T Consensus 496 ~~isl~i~~--Ge~vaIvG~sGsGKSTLlklL~gl~~p-----------~~G~I~idg~~i~~~~~~~lr----~~i~~v 558 (710)
T TIGR03796 496 ENFSLTLQP--GQRVALVGGSGSGKSTIAKLVAGLYQP-----------WSGEILFDGIPREEIPREVLA----NSVAMV 558 (710)
T ss_pred cceeEEEcC--CCEEEEECCCCCCHHHHHHHHhcCCCC-----------CCcEEEECCEeHHHCCHHHHH----hheeEE
Confidence 689999999 889999999999999999999999877 899999999999877755443 234555
Q ss_pred ccccccccc--hhHHHHHHhcCChHHHHHHHHHHHHHccC-------------ccccccCcccccceecccee-------
Q 018394 88 RQVIAVSKS--SDIVLMVLDASKSEGHRQILTKELEAVGL-------------RLNKRPPQIYFKKKKTGGIS------- 145 (356)
Q Consensus 88 ~~~~~~~~~--~d~i~~v~d~~~~~~~~~~i~~~L~~~~i-------------~l~~~~~~lS~g~~qr~~ia------- 145 (356)
.|....+.. .|++.+. .+....+.+.+.++..++ .+...-..||+||+||+++|
T Consensus 559 ~Q~~~lf~gTi~eNi~l~----~~~~~~~~i~~al~~~~l~~~i~~lp~gl~t~i~e~G~~LSGGQrQRiaLARall~~p 634 (710)
T TIGR03796 559 DQDIFLFEGTVRDNLTLW----DPTIPDADLVRACKDAAIHDVITSRPGGYDAELAEGGANLSGGQRQRLEIARALVRNP 634 (710)
T ss_pred ecCChhhhccHHHHhhCC----CCCCCHHHHHHHHHHhCCHHHHHhCcCcccceeccCCCCCCHHHHHHHHHHHHHhhCC
Confidence 565544433 3444321 111222344555555444 23334467999999999998
Q ss_pred --eeecCCCCCCCHHHHHHHHHHhcc-cCcEEEEccCCCHHHHHHHHhccccccceEEEeecCCCC
Q 018394 146 --FNSTLPLTHVDEKLCYQILHEYKI-HNAEVLFREDATVDDLIDVIEGNRKYMKCVYVYNKIDVI 208 (356)
Q Consensus 146 --l~~DEp~~~LD~~~~~~il~~l~~-~~~~i~~thd~~~~~~~~~i~~~~~~~p~i~v~NK~Dl~ 208 (356)
+++||||++||.++-..+++.+.. +.|+|++||+.+.... .+.|+++.+.-+.
T Consensus 635 ~iliLDEptS~LD~~te~~i~~~l~~~~~T~IiitHrl~~i~~----------~D~Iivl~~G~i~ 690 (710)
T TIGR03796 635 SILILDEATSALDPETEKIIDDNLRRRGCTCIIVAHRLSTIRD----------CDEIIVLERGKVV 690 (710)
T ss_pred CEEEEECccccCCHHHHHHHHHHHHhcCCEEEEEecCHHHHHh----------CCEEEEEeCCEEE
Confidence 999999999999997777776663 5699999999754332 3677888765443
No 275
>COG1084 Predicted GTPase [General function prediction only]
Probab=99.80 E-value=6.3e-20 Score=170.20 Aligned_cols=158 Identities=26% Similarity=0.349 Sum_probs=110.8
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHcCCCCccccccccccccceEEEECCEeecccCccccccccccCcc-ccccccccccc-
Q 018394 19 HGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKG-RGRQVIAVSKS- 96 (356)
Q Consensus 19 g~~v~LvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~~D~pGl~~~~~~~~~-~~~~~~~~~~~- 96 (356)
...+.|.|+||||||||+++||+..+.|++|||||....-|.+..++..+|++||||+....-.... .-.|....++.
T Consensus 168 ~pTivVaG~PNVGKSSlv~~lT~AkpEvA~YPFTTK~i~vGhfe~~~~R~QvIDTPGlLDRPl~ErN~IE~qAi~AL~hl 247 (346)
T COG1084 168 LPTIVVAGYPNVGKSSLVRKLTTAKPEVAPYPFTTKGIHVGHFERGYLRIQVIDTPGLLDRPLEERNEIERQAILALRHL 247 (346)
T ss_pred CCeEEEecCCCCcHHHHHHHHhcCCCccCCCCccccceeEeeeecCCceEEEecCCcccCCChHHhcHHHHHHHHHHHHh
Confidence 3689999999999999999999999999999999999999999999999999999999643211100 00111111111
Q ss_pred hhHHHHHHhcCChHHHHHHHHHHHHHccCccccccCcccccceeccceeeeec-CCCCCCCHHHHHHHHHHhcccCcEEE
Q 018394 97 SDIVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNST-LPLTHVDEKLCYQILHEYKIHNAEVL 175 (356)
Q Consensus 97 ~d~i~~v~d~~~~~~~~~~i~~~L~~~~i~l~~~~~~lS~g~~qr~~ial~~D-Ep~~~LD~~~~~~il~~l~~~~~~i~ 175 (356)
.++|+ ++.| -++.+...+....++++++.
T Consensus 248 ~~~Il--------------------------------------------F~~D~Se~cgy~lE~Q~~L~~eIk~------ 277 (346)
T COG1084 248 AGVIL--------------------------------------------FLFDPSETCGYSLEEQISLLEEIKE------ 277 (346)
T ss_pred cCeEE--------------------------------------------EEEcCccccCCCHHHHHHHHHHHHH------
Confidence 11222 3333 44556666666666655442
Q ss_pred EccCCCHHHHHHHHhccccccceEEEeecCCCCChhhHHHHhc------CCCEEEeccccccchHHHHHHHHHH
Q 018394 176 FREDATVDDLIDVIEGNRKYMKCVYVYNKIDVIGIDDVDKLAR------QPNSVVISCNLKLNLDRLLARMWEE 243 (356)
Q Consensus 176 ~thd~~~~~~~~~i~~~~~~~p~i~v~NK~Dl~~~~~~~~l~~------~~~~i~iSa~~~~~l~~L~~~i~~~ 243 (356)
....|+++|+||+|+...+.++++.. ....+.+|+..+.+++.+.+.+...
T Consensus 278 -----------------~f~~p~v~V~nK~D~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~v~~~ 334 (346)
T COG1084 278 -----------------LFKAPIVVVINKIDIADEEKLEEIEASVLEEGGEEPLKISATKGCGLDKLREEVRKT 334 (346)
T ss_pred -----------------hcCCCeEEEEecccccchhHHHHHHHHHHhhccccccceeeeehhhHHHHHHHHHHH
Confidence 11269999999999997776655432 1234678899999999988888765
No 276
>PRK14261 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.80 E-value=6.6e-19 Score=163.12 Aligned_cols=181 Identities=17% Similarity=0.092 Sum_probs=117.2
Q ss_pred CCCCeEEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCccccccccccccceEEEECCEeecccCccccccccccCcccc
Q 018394 8 AGEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRG 87 (356)
Q Consensus 8 ~~~s~~v~~~~g~~v~LvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~~D~pGl~~~~~~~~~~~ 87 (356)
.+++|++.+ |++++|+|+||||||||+++|+|...+. | ..+..|.+.++|.++.....+ . ......+++.
T Consensus 23 ~~vs~~i~~--Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~---~---~~~~~G~i~~~g~~~~~~~~~-~-~~~~~~i~~~ 92 (253)
T PRK14261 23 YDITISIPK--NRVTALIGPSGCGKSTLLRCFNRMNDLI---P---GCRITGDILYNGENIMDSGAD-V-VALRRKIGMV 92 (253)
T ss_pred eeeEEEECC--CcEEEEECCCCCCHHHHHHHHhccccCC---C---CCCcceEEEECCEEccccccc-h-hhhhceEEEE
Confidence 688999999 8899999999999999999999986420 0 011479999999887532111 0 0111233444
Q ss_pred cccccccc--chhHHHHHHhcC---ChHHHHHHHHHHHHHccC------ccccccCcccccceecccee---------ee
Q 018394 88 RQVIAVSK--SSDIVLMVLDAS---KSEGHRQILTKELEAVGL------RLNKRPPQIYFKKKKTGGIS---------FN 147 (356)
Q Consensus 88 ~~~~~~~~--~~d~i~~v~d~~---~~~~~~~~i~~~L~~~~i------~l~~~~~~lS~g~~qr~~ia---------l~ 147 (356)
.|....+. ..+.+.+..... ........+.+.++.+++ .+++.+..||+|++||+.++ ++
T Consensus 93 ~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~lll 172 (253)
T PRK14261 93 FQRPNPFPKSIYENVAYGPRIHGEKNKKTLDTIVEKSLKGAALWDEVKDRLHDSALSLSGGQQQRLCIARTLAVNPEVIL 172 (253)
T ss_pred ecCCccCcccHHHHHHhhHHhcCCCCHHHHHHHHHHHHHHhcCchhhHHHhhcChhhCCHHHHHHHHHHHHHhcCCCEEE
Confidence 44332222 233333322211 111223456667777765 35788899999999999988 99
Q ss_pred ecCCCCCCCHHHHHHH---HHHhcccCcEEEEccCCCHHHHHHHHhccccccceEEEeecCCC
Q 018394 148 STLPLTHVDEKLCYQI---LHEYKIHNAEVLFREDATVDDLIDVIEGNRKYMKCVYVYNKIDV 207 (356)
Q Consensus 148 ~DEp~~~LD~~~~~~i---l~~l~~~~~~i~~thd~~~~~~~~~i~~~~~~~p~i~v~NK~Dl 207 (356)
+||||++||+.....+ ++.+....+++++||+.....- ....+++++..-+
T Consensus 173 LDEP~~gLD~~~~~~l~~~l~~~~~~~tvii~sh~~~~~~~---------~~d~v~~l~~G~i 226 (253)
T PRK14261 173 MDEPCSALDPIATAKIEDLIEDLKKEYTVIIVTHNMQQAAR---------VSDYTGFMYLGKL 226 (253)
T ss_pred EeCCcccCCHHHHHHHHHHHHHHhhCceEEEEEcCHHHHHh---------hCCEEEEEECCEE
Confidence 9999999999885544 4444445699999999754321 1355666665443
No 277
>PRK14255 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.80 E-value=9.9e-19 Score=161.80 Aligned_cols=180 Identities=16% Similarity=0.101 Sum_probs=115.3
Q ss_pred CCCCeEEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCccccccccccccceEEEECCEeecccCccccccccccCcccc
Q 018394 8 AGEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRG 87 (356)
Q Consensus 8 ~~~s~~v~~~~g~~v~LvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~~D~pGl~~~~~~~~~~~ 87 (356)
.++||++.+ |++++|+|+||||||||+++|+|...+. | -.+..|.|.++|.++...+. .. ......+++.
T Consensus 22 ~~vs~~i~~--Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~---~---~~~~~G~i~~~g~~~~~~~~-~~-~~~~~~i~~~ 91 (252)
T PRK14255 22 KGIDLDFNQ--NEITALIGPSGCGKSTYLRTLNRMNDLI---P---GVTITGNVSLRGQNIYAPNE-DV-VQLRKQVGMV 91 (252)
T ss_pred ecceEEEcC--CCEEEEECCCCCCHHHHHHHHhcccccC---C---CCCcccEEEEcCEEcccccc-cH-HHhcCeEEEE
Confidence 688999999 8899999999999999999999975310 0 00147999999987642111 00 0111233343
Q ss_pred ccccccc--cchhHHHHHHhcC---ChHHHHHHHHHHHHHccC------ccccccCcccccceecccee---------ee
Q 018394 88 RQVIAVS--KSSDIVLMVLDAS---KSEGHRQILTKELEAVGL------RLNKRPPQIYFKKKKTGGIS---------FN 147 (356)
Q Consensus 88 ~~~~~~~--~~~d~i~~v~d~~---~~~~~~~~i~~~L~~~~i------~l~~~~~~lS~g~~qr~~ia---------l~ 147 (356)
.|....+ ...+.+.+..... ......+.+.+.++.+++ .+++.+.+||+||+||+.|+ ++
T Consensus 92 ~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LS~Gq~qrv~laral~~~p~lll 171 (252)
T PRK14255 92 FQQPNPFPFSIYENVIYGLRLAGVKDKAVLDEAVETSLKQAAIWDEVKDHLHESALSLSGGQQQRVCIARVLAVKPDVIL 171 (252)
T ss_pred ECCCccCCCcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCccchhhHHhcCcccCCHHHHHHHHHHHHHhcCCCEEE
Confidence 4432222 2244444332211 111112345566677664 35678899999999999998 99
Q ss_pred ecCCCCCCCHHHHHHH---HHHhcccCcEEEEccCCCHHHHHHHHhccccccceEEEeecCC
Q 018394 148 STLPLTHVDEKLCYQI---LHEYKIHNAEVLFREDATVDDLIDVIEGNRKYMKCVYVYNKID 206 (356)
Q Consensus 148 ~DEp~~~LD~~~~~~i---l~~l~~~~~~i~~thd~~~~~~~~~i~~~~~~~p~i~v~NK~D 206 (356)
+||||++||......+ |+.+....++|++||+.....- ++..+++++..-
T Consensus 172 lDEPt~~LD~~~~~~l~~~l~~~~~~~tii~vsH~~~~~~~---------~~d~i~~l~~G~ 224 (252)
T PRK14255 172 LDEPTSALDPISSTQIENMLLELRDQYTIILVTHSMHQASR---------ISDKTAFFLTGN 224 (252)
T ss_pred EcCCCccCCHHHHHHHHHHHHHHHhCCEEEEEECCHHHHHH---------hCCEEEEEECCE
Confidence 9999999999885554 4444444689999999754321 235566666543
No 278
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=99.80 E-value=1.8e-19 Score=183.88 Aligned_cols=151 Identities=21% Similarity=0.256 Sum_probs=111.3
Q ss_pred CCCCeEEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCccccccccccccceEEEECCEeecccCccccccccccCcccc
Q 018394 8 AGEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRG 87 (356)
Q Consensus 8 ~~~s~~v~~~~g~~v~LvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~~D~pGl~~~~~~~~~~~ 87 (356)
+++||++++ |+.++|+|++|||||||+++|+|...| .+|.|.++|.++.-+ ...+ ...++++
T Consensus 352 ~~isl~i~~--G~~vaIvG~SGsGKSTLl~lL~g~~~p-----------~~G~I~i~g~~i~~~-~~~l----r~~i~~V 413 (529)
T TIGR02868 352 DGVSLDLPP--GERVAILGPSGSGKSTLLMLLTGLLDP-----------LQGEVTLDGVSVSSL-QDEL----RRRISVF 413 (529)
T ss_pred ecceEEEcC--CCEEEEECCCCCCHHHHHHHHhcCCCC-----------CCcEEEECCEEhhhH-HHHH----HhheEEE
Confidence 689999999 889999999999999999999999876 899999999988754 3333 2345566
Q ss_pred ccccccccc--hhHHHHHHhcCChHHHHHHHHHHHHHccC--cc-----------ccccCcccccceecccee-------
Q 018394 88 RQVIAVSKS--SDIVLMVLDASKSEGHRQILTKELEAVGL--RL-----------NKRPPQIYFKKKKTGGIS------- 145 (356)
Q Consensus 88 ~~~~~~~~~--~d~i~~v~d~~~~~~~~~~i~~~L~~~~i--~l-----------~~~~~~lS~g~~qr~~ia------- 145 (356)
.|....+.. .|++.+. .+....+.+.+.++..++ .+ ...-..||+||+||++||
T Consensus 414 ~Q~~~lF~~TI~eNI~~g----~~~~~~e~i~~al~~a~l~~~i~~lp~GldT~ige~G~~LSGGQrQRiaiARall~~~ 489 (529)
T TIGR02868 414 AQDAHLFDTTVRDNLRLG----RPDATDEELWAALERVGLADWLRSLPDGLDTVLGEGGARLSGGERQRLALARALLADA 489 (529)
T ss_pred ccCcccccccHHHHHhcc----CCCCCHHHHHHHHHHcCCHHHHHhCcccccchhccccCcCCHHHHHHHHHHHHHhcCC
Confidence 666655544 4444432 111223445666666655 12 223356999999999998
Q ss_pred --eeecCCCCCCCHHHHHHHHHHhc---ccCcEEEEccCC
Q 018394 146 --FNSTLPLTHVDEKLCYQILHEYK---IHNAEVLFREDA 180 (356)
Q Consensus 146 --l~~DEp~~~LD~~~~~~il~~l~---~~~~~i~~thd~ 180 (356)
+++||||++||.++-..+.+.+. .+.|+++++|+.
T Consensus 490 ~iliLDE~TSaLD~~te~~I~~~l~~~~~~~TvIiItHrl 529 (529)
T TIGR02868 490 PILLLDEPTEHLDAGTESELLEDLLAALSGKTVVVITHHL 529 (529)
T ss_pred CEEEEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEecCC
Confidence 99999999999998666655554 456999999973
No 279
>PRK14258 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.80 E-value=7.4e-19 Score=163.61 Aligned_cols=178 Identities=13% Similarity=0.123 Sum_probs=115.8
Q ss_pred CCCCeEEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCccccccccccccceEEEECCEeecccCccccccccccCcccc
Q 018394 8 AGEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRG 87 (356)
Q Consensus 8 ~~~s~~v~~~~g~~v~LvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~~D~pGl~~~~~~~~~~~ 87 (356)
+++||++.+ |++++|+|+|||||||||++|+|...+-+.+ +..|.+.++|.++.....+ .. ......++.
T Consensus 24 ~~is~~i~~--Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~g~i------~~~G~i~~~g~~i~~~~~~-~~-~~~~~i~~~ 93 (261)
T PRK14258 24 EGVSMEIYQ--SKVTAIIGPSGCGKSTFLKCLNRMNELESEV------RVEGRVEFFNQNIYERRVN-LN-RLRRQVSMV 93 (261)
T ss_pred eceEEEEcC--CcEEEEECCCCCCHHHHHHHHhcccCCCCCc------cccceEEECCEEhhccccc-hH-HhhccEEEE
Confidence 689999999 8899999999999999999999997651111 1468999999876421110 00 011123333
Q ss_pred ccccccc--cchhHHHHHHhcC--Ch-HHHHHHHHHHHHHccC------ccccccCcccccceecccee---------ee
Q 018394 88 RQVIAVS--KSSDIVLMVLDAS--KS-EGHRQILTKELEAVGL------RLNKRPPQIYFKKKKTGGIS---------FN 147 (356)
Q Consensus 88 ~~~~~~~--~~~d~i~~v~d~~--~~-~~~~~~i~~~L~~~~i------~l~~~~~~lS~g~~qr~~ia---------l~ 147 (356)
.+....+ ...+.+.+..... .+ ....+.+.+.++.+++ .+++.+..||+||+||+.+| ++
T Consensus 94 ~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrv~laral~~~p~vll 173 (261)
T PRK14258 94 HPKPNLFPMSVYDNVAYGVKIVGWRPKLEIDDIVESALKDADLWDEIKHKIHKSALDLSGGQQQRLCIARALAVKPKVLL 173 (261)
T ss_pred ecCCccCcccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCcchhhhHhcCCcccCCHHHHHHHHHHHHHhcCCCEEE
Confidence 3322222 2233333322111 11 1223456778888876 25778899999999999998 99
Q ss_pred ecCCCCCCCHHHHHHH---HHHhc--ccCcEEEEccCCCHHHHHHHHhccccccceEEEeec
Q 018394 148 STLPLTHVDEKLCYQI---LHEYK--IHNAEVLFREDATVDDLIDVIEGNRKYMKCVYVYNK 204 (356)
Q Consensus 148 ~DEp~~~LD~~~~~~i---l~~l~--~~~~~i~~thd~~~~~~~~~i~~~~~~~p~i~v~NK 204 (356)
+||||++||+.....+ +.++. .+.+++++||+.....- .+..+++++.
T Consensus 174 LDEP~~~LD~~~~~~l~~~l~~l~~~~~~tiiivsH~~~~i~~---------~~d~i~~l~~ 226 (261)
T PRK14258 174 MDEPCFGLDPIASMKVESLIQSLRLRSELTMVIVSHNLHQVSR---------LSDFTAFFKG 226 (261)
T ss_pred EeCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHH---------hcCEEEEEcc
Confidence 9999999999985554 44443 24699999999754321 2356677765
No 280
>PRK03695 vitamin B12-transporter ATPase; Provisional
Probab=99.79 E-value=8.1e-19 Score=162.14 Aligned_cols=157 Identities=18% Similarity=0.164 Sum_probs=108.5
Q ss_pred CCCCeEEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCccccccccccccceEEEECCEeecccCccccccccccCcccc
Q 018394 8 AGEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRG 87 (356)
Q Consensus 8 ~~~s~~v~~~~g~~v~LvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~~D~pGl~~~~~~~~~~~ 87 (356)
.++||++.+ |++++|+|+||||||||+++|+|.. + ..|.+.++|.++.-.+...+. ...++.
T Consensus 13 ~~vsl~i~~--Gei~~l~G~nGsGKSTLl~~l~Gl~-~-----------~~G~i~~~g~~i~~~~~~~~~----~~i~~v 74 (248)
T PRK03695 13 GPLSAEVRA--GEILHLVGPNGAGKSTLLARMAGLL-P-----------GSGSIQFAGQPLEAWSAAELA----RHRAYL 74 (248)
T ss_pred cceEEEEcC--CCEEEEECCCCCCHHHHHHHHcCCC-C-----------CCeEEEECCEecCcCCHHHHh----hheEEe
Confidence 589999999 8899999999999999999999986 3 379999999876533322111 122333
Q ss_pred ccccccc---cchhHHHHHHhc-CChHHHHHHHHHHHHHccC--ccccccCcccccceecccee----------------
Q 018394 88 RQVIAVS---KSSDIVLMVLDA-SKSEGHRQILTKELEAVGL--RLNKRPPQIYFKKKKTGGIS---------------- 145 (356)
Q Consensus 88 ~~~~~~~---~~~d~i~~v~d~-~~~~~~~~~i~~~L~~~~i--~l~~~~~~lS~g~~qr~~ia---------------- 145 (356)
.|....+ ...+++.+.... .......+.+.+.++.+++ .+++.+..||+||+||+.++
T Consensus 75 ~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~~~~~~p~p~l 154 (248)
T PRK03695 75 SQQQTPPFAMPVFQYLTLHQPDKTRTEAVASALNEVAEALGLDDKLGRSVNQLSGGEWQRVRLAAVVLQVWPDINPAGQL 154 (248)
T ss_pred cccCccCCCccHHHHHHhcCccCCCcHHHHHHHHHHHHHcCCHhHhcCCcccCCHHHHHHHHHHHHHhccccccCCCCCE
Confidence 3332212 223333322111 1112224567888999999 67888999999999998743
Q ss_pred eeecCCCCCCCHHHHHH---HHHHhcc-cCcEEEEccCCCH
Q 018394 146 FNSTLPLTHVDEKLCYQ---ILHEYKI-HNAEVLFREDATV 182 (356)
Q Consensus 146 l~~DEp~~~LD~~~~~~---il~~l~~-~~~~i~~thd~~~ 182 (356)
+++||||++||+..... +|+.+.. +.+++++||+.+.
T Consensus 155 lllDEPt~~LD~~~~~~l~~~L~~~~~~~~tvi~~sH~~~~ 195 (248)
T PRK03695 155 LLLDEPMNSLDVAQQAALDRLLSELCQQGIAVVMSSHDLNH 195 (248)
T ss_pred EEEcCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHH
Confidence 67899999999987554 4444443 4599999999763
No 281
>PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=99.79 E-value=3.5e-19 Score=183.30 Aligned_cols=170 Identities=22% Similarity=0.251 Sum_probs=123.6
Q ss_pred CCCCeEEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCccccccccccccceEEEECCEeecccCccccccccccCcccc
Q 018394 8 AGEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRG 87 (356)
Q Consensus 8 ~~~s~~v~~~~g~~v~LvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~~D~pGl~~~~~~~~~~~ 87 (356)
+++||++++ |++++|+|+||||||||+++|+|...| .+|.|.++|.++.-++...++ ..++..
T Consensus 357 ~~i~~~i~~--G~~~aivG~sGsGKSTL~~ll~g~~~p-----------~~G~I~i~g~~i~~~~~~~~r----~~i~~v 419 (574)
T PRK11160 357 KGLSLQIKA--GEKVALLGRTGCGKSTLLQLLTRAWDP-----------QQGEILLNGQPIADYSEAALR----QAISVV 419 (574)
T ss_pred ecceEEECC--CCEEEEECCCCCCHHHHHHHHhcCCCC-----------CCceEEECCEEhhhCCHHHHH----hheeEE
Confidence 689999999 889999999999999999999999866 899999999998777654433 234445
Q ss_pred ccccccccc--hhHHHHHHhcCChHHHHHHHHHHHHHccC--cccc----------ccCcccccceecccee--------
Q 018394 88 RQVIAVSKS--SDIVLMVLDASKSEGHRQILTKELEAVGL--RLNK----------RPPQIYFKKKKTGGIS-------- 145 (356)
Q Consensus 88 ~~~~~~~~~--~d~i~~v~d~~~~~~~~~~i~~~L~~~~i--~l~~----------~~~~lS~g~~qr~~ia-------- 145 (356)
.|....+.. .|++.+. .+....+.+.+.++.+++ .+.+ ....||+||+||+++|
T Consensus 420 ~Q~~~lf~~ti~~Ni~~~----~~~~~~~~i~~al~~~~l~~~i~~p~GldT~vge~g~~LSgGqrqRialARall~~~~ 495 (574)
T PRK11160 420 SQRVHLFSATLRDNLLLA----APNASDEALIEVLQQVGLEKLLEDDKGLNAWLGEGGRQLSGGEQRRLGIARALLHDAP 495 (574)
T ss_pred cccchhhcccHHHHhhcC----CCccCHHHHHHHHHHcCCHHHHcCccccCchhcCCCCCCCHHHHHHHHHHHHHhcCCC
Confidence 555444433 2333221 122233456777888877 3433 4467999999999998
Q ss_pred -eeecCCCCCCCHHHHHHHHHHh---cccCcEEEEccCCCHHHHHHHHhccccccceEEEeecCCCC
Q 018394 146 -FNSTLPLTHVDEKLCYQILHEY---KIHNAEVLFREDATVDDLIDVIEGNRKYMKCVYVYNKIDVI 208 (356)
Q Consensus 146 -l~~DEp~~~LD~~~~~~il~~l---~~~~~~i~~thd~~~~~~~~~i~~~~~~~p~i~v~NK~Dl~ 208 (356)
+++||||++||+++...+++.+ ..+.++++++|+.+.... .+.++++++..+.
T Consensus 496 ililDE~ts~lD~~t~~~i~~~l~~~~~~~tviiitHr~~~~~~----------~d~i~~l~~G~i~ 552 (574)
T PRK11160 496 LLLLDEPTEGLDAETERQILELLAEHAQNKTVLMITHRLTGLEQ----------FDRICVMDNGQII 552 (574)
T ss_pred EEEEeCCcccCCHHHHHHHHHHHHHHcCCCEEEEEecChhHHHh----------CCEEEEEeCCeEE
Confidence 9999999999999866555544 345699999999754322 3677888776544
No 282
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=99.79 E-value=6.4e-19 Score=178.61 Aligned_cols=161 Identities=11% Similarity=0.159 Sum_probs=112.2
Q ss_pred CCCCeEEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCccccccccccccceEEEECCEeecccCccccccccccCcccc
Q 018394 8 AGEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRG 87 (356)
Q Consensus 8 ~~~s~~v~~~~g~~v~LvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~~D~pGl~~~~~~~~~~~ 87 (356)
+++||++.+ |++++|+|+|||||||||++|+|...| |.+|.|.++|.++.... + .......+++.
T Consensus 277 ~~is~~i~~--Ge~~~l~G~NGsGKSTLl~~l~G~~~p----------~~~G~i~~~g~~~~~~~-~--~~~~~~~i~~v 341 (500)
T TIGR02633 277 DDVSFSLRR--GEILGVAGLVGAGRTELVQALFGAYPG----------KFEGNVFINGKPVDIRN-P--AQAIRAGIAMV 341 (500)
T ss_pred ccceeEEeC--CcEEEEeCCCCCCHHHHHHHHhCCCCC----------CCCeEEEECCEECCCCC-H--HHHHhCCCEEc
Confidence 589999999 889999999999999999999999753 15899999998763211 0 00111234444
Q ss_pred cccc---cccc---chhHHHHHH-hcC------ChHHHHHHHHHHHHHccC---ccccccCcccccceecccee------
Q 018394 88 RQVI---AVSK---SSDIVLMVL-DAS------KSEGHRQILTKELEAVGL---RLNKRPPQIYFKKKKTGGIS------ 145 (356)
Q Consensus 88 ~~~~---~~~~---~~d~i~~v~-d~~------~~~~~~~~i~~~L~~~~i---~l~~~~~~lS~g~~qr~~ia------ 145 (356)
.|.. ..+. ..+.+.+.. ... ......+.+.++|+.+++ ..++++..||+||+||+.||
T Consensus 342 ~q~~~~~~l~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~la~al~~~ 421 (500)
T TIGR02633 342 PEDRKRHGIVPILGVGKNITLSVLKSFCFKMRIDAAAELQIIGSAIQRLKVKTASPFLPIGRLSGGNQQKAVLAKMLLTN 421 (500)
T ss_pred CcchhhCCcCCCCCHHHHhcchhhhhhccCCcCCHHHHHHHHHHHHHhcCccCCCccCccccCCHHHHHHHHHHHHHhhC
Confidence 4432 1222 233333211 100 112234567889999998 25788999999999999998
Q ss_pred ---eeecCCCCCCCHHHHHH---HHHHhcc-cCcEEEEccCCCHH
Q 018394 146 ---FNSTLPLTHVDEKLCYQ---ILHEYKI-HNAEVLFREDATVD 183 (356)
Q Consensus 146 ---l~~DEp~~~LD~~~~~~---il~~l~~-~~~~i~~thd~~~~ 183 (356)
+++||||++||+..... +++.+.. +.++|++|||.+..
T Consensus 422 p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviivsHd~~~~ 466 (500)
T TIGR02633 422 PRVLILDEPTRGVDVGAKYEIYKLINQLAQEGVAIIVVSSELAEV 466 (500)
T ss_pred CCEEEEcCCCCCcCHhHHHHHHHHHHHHHhCCCEEEEECCCHHHH
Confidence 99999999999988554 4455543 45899999997644
No 283
>PRK14262 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.79 E-value=6.5e-19 Score=162.84 Aligned_cols=165 Identities=18% Similarity=0.145 Sum_probs=109.8
Q ss_pred CCCCeEEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCccccccccccccceEEEECCEeecccCccccccccccCcccc
Q 018394 8 AGEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRG 87 (356)
Q Consensus 8 ~~~s~~v~~~~g~~v~LvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~~D~pGl~~~~~~~~~~~ 87 (356)
.+++|++.+ |++++|+|+|||||||||++|+|...+. |. .|..|.+.++|.++...+. .. ......+++.
T Consensus 20 ~~i~~~i~~--Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~---~~---~~~~G~i~i~g~~~~~~~~-~~-~~~~~~i~~~ 89 (250)
T PRK14262 20 KNVTMKIFK--NQITAIIGPSGCGKTTLLRSINRMNDHI---PG---FRVEGKIYFKGQDIYDPQL-DV-TEYRKKVGMV 89 (250)
T ss_pred eeeeEeecC--CCEEEEECCCCCCHHHHHHHHhccccCC---CC---CCcceEEEECCEEcccchh-hH-HHhhhhEEEE
Confidence 588999999 8899999999999999999999986531 00 1257999999987642110 00 0011223333
Q ss_pred cccccc--ccchhHHHHHHhcC--C-hHHHHHHHHHHHHHccC------ccccccCcccccceecccee---------ee
Q 018394 88 RQVIAV--SKSSDIVLMVLDAS--K-SEGHRQILTKELEAVGL------RLNKRPPQIYFKKKKTGGIS---------FN 147 (356)
Q Consensus 88 ~~~~~~--~~~~d~i~~v~d~~--~-~~~~~~~i~~~L~~~~i------~l~~~~~~lS~g~~qr~~ia---------l~ 147 (356)
.|.... ....+.+.+..... . .....+.+.+.++.+++ ..++.+..||+||+||+.++ ++
T Consensus 90 ~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qr~~la~al~~~p~lll 169 (250)
T PRK14262 90 FQKPTPFPMSIYDNVAFGPRIHGVKSKHKLDRIVEESLKKAALWDEVKSELNKPGTRLSGGQQQRLCIARALAVEPEVIL 169 (250)
T ss_pred ecCCccCcccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCCchhHHHHhCChhhcCHHHHHHHHHHHHHhCCCCEEE
Confidence 333222 22234444332221 1 11223346677777776 25778899999999999988 99
Q ss_pred ecCCCCCCCHHHHHH---HHHHhcccCcEEEEccCCCH
Q 018394 148 STLPLTHVDEKLCYQ---ILHEYKIHNAEVLFREDATV 182 (356)
Q Consensus 148 ~DEp~~~LD~~~~~~---il~~l~~~~~~i~~thd~~~ 182 (356)
+||||++||...... ++..+....+++++||+...
T Consensus 170 lDEP~~~LD~~~~~~l~~~l~~~~~~~tili~sH~~~~ 207 (250)
T PRK14262 170 LDEPTSALDPIATQRIEKLLEELSENYTIVIVTHNIGQ 207 (250)
T ss_pred EeCCccccCHHHHHHHHHHHHHHhcCcEEEEEeCCHHH
Confidence 999999999987544 44454445689999999763
No 284
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=99.79 E-value=3.8e-19 Score=181.04 Aligned_cols=163 Identities=15% Similarity=0.152 Sum_probs=110.4
Q ss_pred CCCCeEEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCccccccccccccceEEEEC-CEee-cccCcc-ccccccccCc
Q 018394 8 AGEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYN-DTKI-QLLDLP-GIIEGASEGK 84 (356)
Q Consensus 8 ~~~s~~v~~~~g~~v~LvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~-g~~i-~~~D~p-Gl~~~~~~~~ 84 (356)
.++||++.+ |++++|+|+|||||||||++|+|...+ ..|.|.++ |.+. .+-+.. .-.......+
T Consensus 301 ~~is~~i~~--Ge~~~l~G~NGsGKSTLl~~l~Gl~~p-----------~~G~i~~~~g~~~~~~~~~~~~~~~~~~~~i 367 (520)
T TIGR03269 301 DNVSLEVKE--GEIFGIVGTSGAGKTTLSKIIAGVLEP-----------TSGEVNVRVGDEWVDMTKPGPDGRGRAKRYI 367 (520)
T ss_pred eeEEEEEcC--CCEEEEECCCCCCHHHHHHHHhCCCCC-----------CCeEEEEecCCccccccccchhhHHHHhhhE
Confidence 578999999 889999999999999999999999866 78999995 5322 111100 0000011123
Q ss_pred cccccccccccc---hhHHHHHHhc-CChHHHHHHHHHHHHHccCc-------cccccCcccccceecccee--------
Q 018394 85 GRGRQVIAVSKS---SDIVLMVLDA-SKSEGHRQILTKELEAVGLR-------LNKRPPQIYFKKKKTGGIS-------- 145 (356)
Q Consensus 85 ~~~~~~~~~~~~---~d~i~~v~d~-~~~~~~~~~i~~~L~~~~i~-------l~~~~~~lS~g~~qr~~ia-------- 145 (356)
++..|....+.. .+.+.+.... .......+.+.++|+.+++. +++++.+||+||+||+.||
T Consensus 368 ~~v~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LSgGq~qrv~laral~~~p~ 447 (520)
T TIGR03269 368 GILHQEYDLYPHRTVLDNLTEAIGLELPDELARMKAVITLKMVGFDEEKAEEILDKYPDELSEGERHRVALAQVLIKEPR 447 (520)
T ss_pred EEEccCcccCCCCcHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCCCCccchhhhhCChhhCCHHHHHHHHHHHHHhcCCC
Confidence 444443322222 3333332211 11122335677889999982 5788999999999999998
Q ss_pred -eeecCCCCCCCHHHHHHHHHHh---c-c-cCcEEEEccCCCHH
Q 018394 146 -FNSTLPLTHVDEKLCYQILHEY---K-I-HNAEVLFREDATVD 183 (356)
Q Consensus 146 -l~~DEp~~~LD~~~~~~il~~l---~-~-~~~~i~~thd~~~~ 183 (356)
+++||||++||+.....+++.+ . . +.++|++|||....
T Consensus 448 lLllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vsHd~~~~ 491 (520)
T TIGR03269 448 IVILDEPTGTMDPITKVDVTHSILKAREEMEQTFIIVSHDMDFV 491 (520)
T ss_pred EEEEeCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEeCCHHHH
Confidence 9999999999999866555544 3 2 45899999997653
No 285
>PRK14243 phosphate transporter ATP-binding protein; Provisional
Probab=99.79 E-value=8.1e-19 Score=163.62 Aligned_cols=177 Identities=14% Similarity=0.123 Sum_probs=114.3
Q ss_pred CCCCeEEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCccccccccccccceEEEECCEeecccCccccccccccCcccc
Q 018394 8 AGEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRG 87 (356)
Q Consensus 8 ~~~s~~v~~~~g~~v~LvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~~D~pGl~~~~~~~~~~~ 87 (356)
++++|++.+ |++++|+|+||||||||+++|+|...+. |. .|..|.+.++|.++...+.. . ......+++.
T Consensus 27 ~~vsl~i~~--Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~---~~---~~~~G~i~~~g~~i~~~~~~-~-~~~~~~i~~v 96 (264)
T PRK14243 27 KNVWLDIPK--NQITAFIGPSGCGKSTILRCFNRLNDLI---PG---FRVEGKVTFHGKNLYAPDVD-P-VEVRRRIGMV 96 (264)
T ss_pred ecceEEEcC--CCEEEEECCCCCCHHHHHHHHHhhhccc---CC---CCCceEEEECCEEccccccC-h-HHHhhhEEEE
Confidence 689999999 8899999999999999999999986421 00 12579999999876421100 0 0111223444
Q ss_pred cccccccc--chhHHHHHHhcCC-hHHHHHHHHHHHHHccC------ccccccCcccccceecccee---------eeec
Q 018394 88 RQVIAVSK--SSDIVLMVLDASK-SEGHRQILTKELEAVGL------RLNKRPPQIYFKKKKTGGIS---------FNST 149 (356)
Q Consensus 88 ~~~~~~~~--~~d~i~~v~d~~~-~~~~~~~i~~~L~~~~i------~l~~~~~~lS~g~~qr~~ia---------l~~D 149 (356)
.|....+. ..+.+.+...... .....+.+.+.++.+++ .+++.+.+||+||+||+.|+ +++|
T Consensus 97 ~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgGq~qrv~laral~~~p~lllLD 176 (264)
T PRK14243 97 FQKPNPFPKSIYDNIAYGARINGYKGDMDELVERSLRQAALWDEVKDKLKQSGLSLSGGQQQRLCIARAIAVQPEVILMD 176 (264)
T ss_pred ccCCccccccHHHHHHhhhhhcCcchHHHHHHHHHHHHhCchhhHHHHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEe
Confidence 44332222 2333333221111 11222345556666665 25678889999999999998 9999
Q ss_pred CCCCCCCHHHHHHH---HHHhcccCcEEEEccCCCHHHHHHHHhccccccceEEEee
Q 018394 150 LPLTHVDEKLCYQI---LHEYKIHNAEVLFREDATVDDLIDVIEGNRKYMKCVYVYN 203 (356)
Q Consensus 150 Ep~~~LD~~~~~~i---l~~l~~~~~~i~~thd~~~~~~~~~i~~~~~~~p~i~v~N 203 (356)
|||++||+.....+ |..+....++|++||+...... .+..+++++
T Consensus 177 EPt~~LD~~~~~~l~~~L~~~~~~~tvi~vtH~~~~~~~---------~~d~v~~l~ 224 (264)
T PRK14243 177 EPCSALDPISTLRIEELMHELKEQYTIIIVTHNMQQAAR---------VSDMTAFFN 224 (264)
T ss_pred CCCccCCHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHH---------hCCEEEEEe
Confidence 99999999885554 4444444699999999654321 236677777
No 286
>PRK14236 phosphate transporter ATP-binding protein; Provisional
Probab=99.79 E-value=1.1e-18 Score=163.56 Aligned_cols=181 Identities=15% Similarity=0.099 Sum_probs=117.6
Q ss_pred CCCCeEEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCccccccccccccceEEEECCEeecccCccccccccccCcccc
Q 018394 8 AGEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRG 87 (356)
Q Consensus 8 ~~~s~~v~~~~g~~v~LvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~~D~pGl~~~~~~~~~~~ 87 (356)
.+++|++.+ |++++|+|+||||||||+++|+|...+... -|..|.+.++|.++...+.+ . .......++.
T Consensus 42 ~~vs~~i~~--Ge~~~I~G~nGsGKSTLl~~laGl~~~~~~------~~~~G~i~i~g~~i~~~~~~-~-~~~~~~i~~v 111 (272)
T PRK14236 42 FDISMRIPK--NRVTAFIGPSGCGKSTLLRCFNRMNDLVDN------CRIEGEIRLDGQNIYDKKVD-V-AELRRRVGMV 111 (272)
T ss_pred eeEEEEEcC--CCEEEEECCCCCCHHHHHHHHHhcCCCccC------CCCceEEEECCEECcccccC-H-HHHhccEEEE
Confidence 588999999 889999999999999999999998642000 02689999999876421111 0 0111233444
Q ss_pred cccccccc--chhHHHHHHhcCC---hHHHHHHHHHHHHHccC------ccccccCcccccceecccee---------ee
Q 018394 88 RQVIAVSK--SSDIVLMVLDASK---SEGHRQILTKELEAVGL------RLNKRPPQIYFKKKKTGGIS---------FN 147 (356)
Q Consensus 88 ~~~~~~~~--~~d~i~~v~d~~~---~~~~~~~i~~~L~~~~i------~l~~~~~~lS~g~~qr~~ia---------l~ 147 (356)
.|....+. ..+.+.+...... .....+.+.+.++.+++ .+++.+..||+||+||+++| ++
T Consensus 112 ~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qrv~laral~~~p~lll 191 (272)
T PRK14236 112 FQRPNPFPKSIYENVVYGLRLQGINNRRVLDEAVERSLRGAALWDEVKDRLHENAFGLSGGQQQRLVIARAIAIEPEVLL 191 (272)
T ss_pred ecCCccCcccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCChhHHHHhhCCcccCCHHHHHHHHHHHHHHCCCCEEE
Confidence 44332222 2344433222111 11223456677777776 35678899999999999998 99
Q ss_pred ecCCCCCCCHHHHHH---HHHHhcccCcEEEEccCCCHHHHHHHHhccccccceEEEeecCCC
Q 018394 148 STLPLTHVDEKLCYQ---ILHEYKIHNAEVLFREDATVDDLIDVIEGNRKYMKCVYVYNKIDV 207 (356)
Q Consensus 148 ~DEp~~~LD~~~~~~---il~~l~~~~~~i~~thd~~~~~~~~~i~~~~~~~p~i~v~NK~Dl 207 (356)
+||||++||+..... ++..+....+++++||+...... .+..+++++...+
T Consensus 192 LDEPt~gLD~~~~~~l~~~L~~~~~~~tiiivtH~~~~~~~---------~~d~i~~l~~G~i 245 (272)
T PRK14236 192 LDEPTSALDPISTLKIEELITELKSKYTIVIVTHNMQQAAR---------VSDYTAFMYMGKL 245 (272)
T ss_pred EeCCcccCCHHHHHHHHHHHHHHHhCCeEEEEeCCHHHHHh---------hCCEEEEEECCEE
Confidence 999999999988544 44454445689999999754221 1355666665443
No 287
>cd01881 Obg_like The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1. Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to
Probab=99.79 E-value=9.1e-20 Score=158.09 Aligned_cols=162 Identities=35% Similarity=0.560 Sum_probs=108.8
Q ss_pred EEcCCCCcHHHHHHHHHcCCCCccccccccccccceEEEEC-CEeecccCccccccccccCccccccccccccchhHHHH
Q 018394 24 LIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYN-DTKIQLLDLPGIIEGASEGKGRGRQVIAVSKSSDIVLM 102 (356)
Q Consensus 24 LvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~-g~~i~~~D~pGl~~~~~~~~~~~~~~~~~~~~~d~i~~ 102 (356)
|+|+||||||||+|+|++....++++|+||+++..|.+.++ +.++.++||||+.........+..++...++.+|++++
T Consensus 1 iiG~~~~GKStll~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~d~ii~ 80 (176)
T cd01881 1 LVGLPNVGKSTLLNALTNAKPKVANYPFTTLEPNLGVVEVPDGARIQVADIPGLIEGASEGRGLGNQFLAHIRRADAILH 80 (176)
T ss_pred CCCCCCCcHHHHHHHHhcCCccccCCCceeecCcceEEEcCCCCeEEEEeccccchhhhcCCCccHHHHHHHhccCEEEE
Confidence 58999999999999999988778999999999999999998 99999999999854333222233344445667888888
Q ss_pred HHhcCChH-----HHHHHHHHHHHHccCccccccCcccccceeccceeeeecCCCCCCCHHHHHHHHHHhcccCcEEEEc
Q 018394 103 VLDASKSE-----GHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNAEVLFR 177 (356)
Q Consensus 103 v~d~~~~~-----~~~~~i~~~L~~~~i~l~~~~~~lS~g~~qr~~ial~~DEp~~~LD~~~~~~il~~l~~~~~~i~~t 177 (356)
++|+.... ...+....+...+. . ...
T Consensus 81 v~d~~~~~~~~~~~~~~~~~~~~~~~~----------------------------------------~-~~~-------- 111 (176)
T cd01881 81 VVDASEDDDIGGVDPLEDYEILNAELK----------------------------------------L-YDL-------- 111 (176)
T ss_pred EEeccCCccccccCHHHHHHHHHHHHH----------------------------------------H-hhh--------
Confidence 88876542 11111111111000 0 000
Q ss_pred cCCCHHHHHHHHhccccccceEEEeecCCCCChhhHHHH-----h--cCCCEEEeccccccchHHHHHHHHHH
Q 018394 178 EDATVDDLIDVIEGNRKYMKCVYVYNKIDVIGIDDVDKL-----A--RQPNSVVISCNLKLNLDRLLARMWEE 243 (356)
Q Consensus 178 hd~~~~~~~~~i~~~~~~~p~i~v~NK~Dl~~~~~~~~l-----~--~~~~~i~iSa~~~~~l~~L~~~i~~~ 243 (356)
..++ .....+|.++|+||+|+......... . ....++++||+++.|++++.+.+...
T Consensus 112 -----~~~~----~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gl~~l~~~l~~~ 175 (176)
T cd01881 112 -----ETIL----GLLTAKPVIYVLNKIDLDDAEELEEELVRELALEEGAEVVPISAKTEEGLDELIRAIYEL 175 (176)
T ss_pred -----hhHH----HHHhhCCeEEEEEchhcCchhHHHHHHHHHHhcCCCCCEEEEehhhhcCHHHHHHHHHhh
Confidence 0000 00124699999999999865443322 1 22458999999999999999988754
No 288
>PRK15494 era GTPase Era; Provisional
Probab=99.79 E-value=1.2e-19 Score=175.01 Aligned_cols=167 Identities=30% Similarity=0.361 Sum_probs=112.1
Q ss_pred CCCCeEEEecCCc-------EEEEEcCCCCcHHHHHHHHHcCC-CCccccccccccccceEEEECCEeecccCccccccc
Q 018394 8 AGEGFEVTKFGHG-------RVALIGFPSVGKSTLLTLLTGTH-SEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEG 79 (356)
Q Consensus 8 ~~~s~~v~~~~g~-------~v~LvG~~gaGKSTLln~L~g~~-~~vs~~p~TT~~~~~G~i~~~g~~i~~~D~pGl~~~ 79 (356)
..+++++.. |. .|+|+|.||||||||+|.|+|.. +.+++.|+||++...|.+.+++.++.++||||+...
T Consensus 36 ~~~~~~~~~--g~~~~~k~~kV~ivG~~nvGKSTLin~l~~~k~~ivs~k~~tTr~~~~~~~~~~~~qi~~~DTpG~~~~ 113 (339)
T PRK15494 36 SKLPLEVKF--GKMSNQKTVSVCIIGRPNSGKSTLLNRIIGEKLSIVTPKVQTTRSIITGIITLKDTQVILYDTPGIFEP 113 (339)
T ss_pred cCCcccccc--ccccccceeEEEEEcCCCCCHHHHHHHHhCCceeeccCCCCCccCcEEEEEEeCCeEEEEEECCCcCCC
Confidence 355666655 56 99999999999999999999987 467899999999999999999999999999998532
Q ss_pred ccc-CccccccccccccchhHHHHHHhcCChHHHHHHHHHHHHHccCccccccCcccccceeccceeeeecCCCCCCCHH
Q 018394 80 ASE-GKGRGRQVIAVSKSSDIVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEK 158 (356)
Q Consensus 80 ~~~-~~~~~~~~~~~~~~~d~i~~v~d~~~~~~~~~~i~~~L~~~~i~l~~~~~~lS~g~~qr~~ial~~DEp~~~LD~~ 158 (356)
... ...+.......+..+|++++++|+.......+
T Consensus 114 ~~~l~~~~~r~~~~~l~~aDvil~VvD~~~s~~~~~-------------------------------------------- 149 (339)
T PRK15494 114 KGSLEKAMVRCAWSSLHSADLVLLIIDSLKSFDDIT-------------------------------------------- 149 (339)
T ss_pred cccHHHHHHHHHHHHhhhCCEEEEEEECCCCCCHHH--------------------------------------------
Confidence 111 11111122223456777777666543211100
Q ss_pred HHHHHHHHhcccCcEEEEccCCCHHHHHHHHhccccccceEEEeecCCCCChh--hHHHHh-c---CCCEEEeccccccc
Q 018394 159 LCYQILHEYKIHNAEVLFREDATVDDLIDVIEGNRKYMKCVYVYNKIDVIGID--DVDKLA-R---QPNSVVISCNLKLN 232 (356)
Q Consensus 159 ~~~~il~~l~~~~~~i~~thd~~~~~~~~~i~~~~~~~p~i~v~NK~Dl~~~~--~~~~l~-~---~~~~i~iSa~~~~~ 232 (356)
..+++. +.. ...|.++|+||+|+.... +..... . ...++++||++|.|
T Consensus 150 --~~il~~----------------------l~~--~~~p~IlViNKiDl~~~~~~~~~~~l~~~~~~~~i~~iSAktg~g 203 (339)
T PRK15494 150 --HNILDK----------------------LRS--LNIVPIFLLNKIDIESKYLNDIKAFLTENHPDSLLFPISALSGKN 203 (339)
T ss_pred --HHHHHH----------------------HHh--cCCCEEEEEEhhcCccccHHHHHHHHHhcCCCcEEEEEeccCccC
Confidence 011111 110 124778899999986431 222221 1 23589999999999
Q ss_pred hHHHHHHHHHHhCc
Q 018394 233 LDRLLARMWEEMGL 246 (356)
Q Consensus 233 l~~L~~~i~~~l~~ 246 (356)
+++|.+.+.+.+..
T Consensus 204 v~eL~~~L~~~l~~ 217 (339)
T PRK15494 204 IDGLLEYITSKAKI 217 (339)
T ss_pred HHHHHHHHHHhCCC
Confidence 99999999988754
No 289
>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.79 E-value=5e-19 Score=156.98 Aligned_cols=164 Identities=19% Similarity=0.141 Sum_probs=125.1
Q ss_pred CCCCeEEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCccccccccccccceEEEECCEeecccCccccccccccCcccc
Q 018394 8 AGEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRG 87 (356)
Q Consensus 8 ~~~s~~v~~~~g~~v~LvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~~D~pGl~~~~~~~~~~~ 87 (356)
+++|++|.. |++.+|+||||||||||.++|+|.... +++.|.|.++|.+|.-+.+- +.+..|+.+.
T Consensus 21 kgvnL~v~~--GEvhaiMGPNGsGKSTLa~~i~G~p~Y---------~Vt~G~I~~~GedI~~l~~~---ERAr~GifLa 86 (251)
T COG0396 21 KGVNLTVKE--GEVHAIMGPNGSGKSTLAYTIMGHPKY---------EVTEGEILFDGEDILELSPD---ERARAGIFLA 86 (251)
T ss_pred cCcceeEcC--CcEEEEECCCCCCHHHHHHHHhCCCCc---------eEecceEEECCcccccCCHh---HHHhcCCEEe
Confidence 689999999 889999999999999999999998743 34899999999998765432 3466788888
Q ss_pred ccccccccch---hHHHHHHhcCCh-----HHHHHHHHHHHHHccC---cccccc-Ccccccceecccee---------e
Q 018394 88 RQVIAVSKSS---DIVLMVLDASKS-----EGHRQILTKELEAVGL---RLNKRP-PQIYFKKKKTGGIS---------F 146 (356)
Q Consensus 88 ~~~~~~~~~~---d~i~~v~d~~~~-----~~~~~~i~~~L~~~~i---~l~~~~-~~lS~g~~qr~~ia---------l 146 (356)
+|.+..++.. +++-....+... ......+.+.++.+++ +++|.. ..+|||+++|..|. .
T Consensus 87 fQ~P~ei~GV~~~~fLr~a~n~~~~~~~~~~~~~~~~~e~~~~l~~~~~~l~R~vN~GFSGGEkKR~EilQ~~~lePkl~ 166 (251)
T COG0396 87 FQYPVEIPGVTNSDFLRAAMNARRGARGILPEFIKELKEKAELLGLDEEFLERYVNEGFSGGEKKRNEILQLLLLEPKLA 166 (251)
T ss_pred ecCCccCCCeeHHHHHHHHHHhhhccccccHHHHHHHHHHHHHcCCCHHHhhcccCCCcCcchHHHHHHHHHHhcCCCEE
Confidence 8888776654 444333333211 2335567788888888 577765 46999999998876 8
Q ss_pred eecCCCCCCCHHHHH---HHHHHhcc-cCcEEEEccCCCHHHH
Q 018394 147 NSTLPLTHVDEKLCY---QILHEYKI-HNAEVLFREDATVDDL 185 (356)
Q Consensus 147 ~~DEp~~~LD~~~~~---~il~~l~~-~~~~i~~thd~~~~~~ 185 (356)
++|||-|+||...++ +.++.++. +.+++++||...+.+.
T Consensus 167 ILDE~DSGLDIdalk~V~~~i~~lr~~~~~~liITHy~rll~~ 209 (251)
T COG0396 167 ILDEPDSGLDIDALKIVAEGINALREEGRGVLIITHYQRLLDY 209 (251)
T ss_pred EecCCCcCccHHHHHHHHHHHHHHhcCCCeEEEEecHHHHHhh
Confidence 999999999998854 45566663 5589999998765544
No 290
>PRK14266 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.79 E-value=1.1e-18 Score=161.43 Aligned_cols=180 Identities=17% Similarity=0.107 Sum_probs=117.0
Q ss_pred CCCCeEEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCccccccccccccceEEEECCEeecccCccccccccccCcccc
Q 018394 8 AGEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRG 87 (356)
Q Consensus 8 ~~~s~~v~~~~g~~v~LvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~~D~pGl~~~~~~~~~~~ 87 (356)
.+++|++.+ |+.++|+|+||||||||+++|+|...+. | ..|..|.+.++|.++...+. .. ......+++.
T Consensus 20 ~~~s~~i~~--Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~---~---~~~~~G~v~~~g~~i~~~~~-~~-~~~~~~i~~~ 89 (250)
T PRK14266 20 KNVNLDIPK--NSVTALIGPSGCGKSTFIRTLNRMNDLI---P---GFRHEGHIYLDGVDIYDPAV-DV-VELRKKVGMV 89 (250)
T ss_pred eeeEEEEcC--CCEEEEECCCCCCHHHHHHHHHhhhccC---C---CCCCccEEEECCEEcccccc-cH-HHHhhheEEE
Confidence 688999999 8899999999999999999999975310 0 00268999999987642110 00 0111233444
Q ss_pred cccccccc--chhHHHHHHhcC---ChHHHHHHHHHHHHHccC------ccccccCcccccceecccee---------ee
Q 018394 88 RQVIAVSK--SSDIVLMVLDAS---KSEGHRQILTKELEAVGL------RLNKRPPQIYFKKKKTGGIS---------FN 147 (356)
Q Consensus 88 ~~~~~~~~--~~d~i~~v~d~~---~~~~~~~~i~~~L~~~~i------~l~~~~~~lS~g~~qr~~ia---------l~ 147 (356)
.|....+. ..+.+.+..... ......+.+.+.++.+++ .+++.+..||+|++||++++ ++
T Consensus 90 ~q~~~~~~~t~~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~Gq~qrv~laral~~~p~lll 169 (250)
T PRK14266 90 FQKPNPFPKSIFDNVAYGLRIHGEDDEDFIEERVEESLKAAALWDEVKDKLDKSALGLSGGQQQRLCIARTIAVSPEVIL 169 (250)
T ss_pred ecCCccCcchHHHHHHhHHhhcCCCCHHHHHHHHHHHHHHcCCchhHHHHHhCCcccCCHHHHHHHHHHHHHHcCCCEEE
Confidence 44332222 234443332211 112223456677888776 25778899999999999998 99
Q ss_pred ecCCCCCCCHHHHHH---HHHHhcccCcEEEEccCCCHHHHHHHHhccccccceEEEeecCC
Q 018394 148 STLPLTHVDEKLCYQ---ILHEYKIHNAEVLFREDATVDDLIDVIEGNRKYMKCVYVYNKID 206 (356)
Q Consensus 148 ~DEp~~~LD~~~~~~---il~~l~~~~~~i~~thd~~~~~~~~~i~~~~~~~p~i~v~NK~D 206 (356)
+||||++||+..... ++..+..+.+++++||+...... .+..+++++..-
T Consensus 170 lDEP~~gLD~~~~~~l~~~l~~~~~~~tiii~sh~~~~~~~---------~~~~i~~l~~G~ 222 (250)
T PRK14266 170 MDEPCSALDPISTTKIEDLIHKLKEDYTIVIVTHNMQQATR---------VSKYTSFFLNGE 222 (250)
T ss_pred EcCCCccCCHHHHHHHHHHHHHHhcCCeEEEEECCHHHHHh---------hcCEEEEEECCe
Confidence 999999999987544 45455445689999998754322 235566666543
No 291
>PRK11058 GTPase HflX; Provisional
Probab=99.79 E-value=1.2e-19 Score=179.39 Aligned_cols=160 Identities=23% Similarity=0.309 Sum_probs=109.1
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcCCCCccccccccccccceEEEECCE-eecccCcccccccc-ccCccccccccccccch
Q 018394 20 GRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDT-KIQLLDLPGIIEGA-SEGKGRGRQVIAVSKSS 97 (356)
Q Consensus 20 ~~v~LvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~-~i~~~D~pGl~~~~-~~~~~~~~~~~~~~~~~ 97 (356)
..|+|+|+||||||||||+|++....++++||||+|+..+.+.+.+. ++.++||||+.... +.........+..++.+
T Consensus 198 p~ValVG~~NaGKSSLlN~Lt~~~~~v~~~~~tTld~~~~~i~l~~~~~~~l~DTaG~~r~lp~~lve~f~~tl~~~~~A 277 (426)
T PRK11058 198 PTVSLVGYTNAGKSTLFNRITEARVYAADQLFATLDPTLRRIDVADVGETVLADTVGFIRHLPHDLVAAFKATLQETRQA 277 (426)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCceeeccCCCCCcCCceEEEEeCCCCeEEEEecCcccccCCHHHHHHHHHHHHHhhcC
Confidence 58999999999999999999998877899999999999999998775 88899999985421 11111111222335668
Q ss_pred hHHHHHHhcCChHHHHHHHHHHHHHccCccccccCcccccceeccceeeeecCCCCCCCHHHHHHHHHHhcccCcEEEEc
Q 018394 98 DIVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNAEVLFR 177 (356)
Q Consensus 98 d~i~~v~d~~~~~~~~~~i~~~L~~~~i~l~~~~~~lS~g~~qr~~ial~~DEp~~~LD~~~~~~il~~l~~~~~~i~~t 177 (356)
|++++|+|++.+..... + ..+.+++..+.
T Consensus 278 DlIL~VvDaS~~~~~e~-l-----------------------------------------~~v~~iL~el~--------- 306 (426)
T PRK11058 278 TLLLHVVDAADVRVQEN-I-----------------------------------------EAVNTVLEEID--------- 306 (426)
T ss_pred CEEEEEEeCCCccHHHH-H-----------------------------------------HHHHHHHHHhc---------
Confidence 88888888766432111 0 00112222211
Q ss_pred cCCCHHHHHHHHhccccccceEEEeecCCCCChhh--HHHH-hcCCCEEEeccccccchHHHHHHHHHHhC
Q 018394 178 EDATVDDLIDVIEGNRKYMKCVYVYNKIDVIGIDD--VDKL-ARQPNSVVISCNLKLNLDRLLARMWEEMG 245 (356)
Q Consensus 178 hd~~~~~~~~~i~~~~~~~p~i~v~NK~Dl~~~~~--~~~l-~~~~~~i~iSa~~~~~l~~L~~~i~~~l~ 245 (356)
...+|+++|+||+|+..... .... ...+..+++||++|.|+++|.+.|.+.+.
T Consensus 307 ---------------~~~~pvIiV~NKiDL~~~~~~~~~~~~~~~~~~v~ISAktG~GIdeL~e~I~~~l~ 362 (426)
T PRK11058 307 ---------------AHEIPTLLVMNKIDMLDDFEPRIDRDEENKPIRVWLSAQTGAGIPLLFQALTERLS 362 (426)
T ss_pred ---------------cCCCCEEEEEEcccCCCchhHHHHHHhcCCCceEEEeCCCCCCHHHHHHHHHHHhh
Confidence 11359999999999974311 1111 11233588999999999999999998763
No 292
>COG0370 FeoB Fe2+ transport system protein B [Inorganic ion transport and metabolism]
Probab=99.79 E-value=1.3e-19 Score=182.50 Aligned_cols=153 Identities=25% Similarity=0.357 Sum_probs=112.4
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcCCCCccccccccccccceEEEECCEeecccCccccccccccCc--cccccccccccch
Q 018394 20 GRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGK--GRGRQVIAVSKSS 97 (356)
Q Consensus 20 ~~v~LvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~~D~pGl~~~~~~~~--~~~~~~~~~~~~~ 97 (356)
..||++|.||||||||||+|||....|+||||+|++-.+|.+.+.|..++++|+||+........ ...+.++ .-..+
T Consensus 4 ~~valvGNPNvGKTtlFN~LTG~~q~VgNwpGvTVEkkeg~~~~~~~~i~ivDLPG~YSL~~~S~DE~Var~~l-l~~~~ 82 (653)
T COG0370 4 LTVALVGNPNVGKTTLFNALTGANQKVGNWPGVTVEKKEGKLKYKGHEIEIVDLPGTYSLTAYSEDEKVARDFL-LEGKP 82 (653)
T ss_pred ceEEEecCCCccHHHHHHHHhccCceecCCCCeeEEEEEEEEEecCceEEEEeCCCcCCCCCCCchHHHHHHHH-hcCCC
Confidence 46999999999999999999999999999999999999999999999999999999875332111 1112221 12447
Q ss_pred hHHHHHHhcCChHHHHHHHHHHHHHccCccccccCcccccceeccceeeeecCCCCCCCHHHHHHHHHHhcccCcEEEEc
Q 018394 98 DIVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNAEVLFR 177 (356)
Q Consensus 98 d~i~~v~d~~~~~~~~~~i~~~L~~~~i~l~~~~~~lS~g~~qr~~ial~~DEp~~~LD~~~~~~il~~l~~~~~~i~~t 177 (356)
|+++.|+|+++-++..-...+++|
T Consensus 83 D~ivnVvDAtnLeRnLyltlQLlE-------------------------------------------------------- 106 (653)
T COG0370 83 DLIVNVVDATNLERNLYLTLQLLE-------------------------------------------------------- 106 (653)
T ss_pred CEEEEEcccchHHHHHHHHHHHHH--------------------------------------------------------
Confidence 888888888764433221111111
Q ss_pred cCCCHHHHHHHHhccccccceEEEeecCCCCChh----hHHHHhc--CCCEEEeccccccchHHHHHHHHHHhC
Q 018394 178 EDATVDDLIDVIEGNRKYMKCVYVYNKIDVIGID----DVDKLAR--QPNSVVISCNLKLNLDRLLARMWEEMG 245 (356)
Q Consensus 178 hd~~~~~~~~~i~~~~~~~p~i~v~NK~Dl~~~~----~~~~l~~--~~~~i~iSa~~~~~l~~L~~~i~~~l~ 245 (356)
...|+++++|++|..... +.+++.+ -.+++++||.+|.|+++|++++.+...
T Consensus 107 ----------------~g~p~ilaLNm~D~A~~~Gi~ID~~~L~~~LGvPVv~tvA~~g~G~~~l~~~i~~~~~ 164 (653)
T COG0370 107 ----------------LGIPMILALNMIDEAKKRGIRIDIEKLSKLLGVPVVPTVAKRGEGLEELKRAIIELAE 164 (653)
T ss_pred ----------------cCCCeEEEeccHhhHHhcCCcccHHHHHHHhCCCEEEEEeecCCCHHHHHHHHHHhcc
Confidence 125999999999986432 2344433 246999999999999999999987654
No 293
>COG4107 PhnK ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.79 E-value=4.2e-19 Score=151.12 Aligned_cols=172 Identities=22% Similarity=0.232 Sum_probs=116.4
Q ss_pred CCCCCC-CCCCeEEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCccccccccccccceEEEECCEeecccCccccccc-
Q 018394 2 YQGSSG-AGEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEG- 79 (356)
Q Consensus 2 y~~~~~-~~~s~~v~~~~g~~v~LvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~~D~pGl~~~- 79 (356)
|..+.+ .++||++.+ |+..+|+|.+||||||||++|++...| ..|.+.|....-+..|.-.+.+.
T Consensus 16 Yg~~~gc~~vsF~l~P--GeVLgiVGESGSGKtTLL~~is~rl~p-----------~~G~v~Y~~r~~~~~dl~~msEae 82 (258)
T COG4107 16 YGPGKGCRDVSFDLYP--GEVLGIVGESGSGKTTLLKCISGRLTP-----------DAGTVTYRMRDGQPRDLYTMSEAE 82 (258)
T ss_pred hCCCcCccccceeecC--CcEEEEEecCCCcHHhHHHHHhcccCC-----------CCCeEEEEcCCCCchhHhhhchHH
Confidence 666555 799999999 889999999999999999999999877 88999885433222333222111
Q ss_pred ----cccCcccccccccc------ccchhHH--HHHHhcCChHHHHHHHHHHHHHccC---ccccccCcccccceeccce
Q 018394 80 ----ASEGKGRGRQVIAV------SKSSDIV--LMVLDASKSEGHRQILTKELEAVGL---RLNKRPPQIYFKKKKTGGI 144 (356)
Q Consensus 80 ----~~~~~~~~~~~~~~------~~~~d~i--~~v~d~~~~~~~~~~i~~~L~~~~i---~l~~~~~~lS~g~~qr~~i 144 (356)
.....|.+.|.+.. ...+++- ++.+....-..-.+...++|+.+.| +++..|..+|+|++||+.|
T Consensus 83 RR~L~RTeWG~VhQnP~DGLRm~VSAG~NiGERlma~G~RHYG~iR~~a~~WL~~VEI~~~RiDD~PrtFSGGMqQRLQi 162 (258)
T COG4107 83 RRRLLRTEWGFVHQNPRDGLRMQVSAGGNIGERLMAIGARHYGNIRAEAQDWLEEVEIDLDRIDDLPRTFSGGMQQRLQI 162 (258)
T ss_pred HHHHhhhccceeecCccccceeeeccCCccchhHHhhhhhhhhhHHHHHHHHHHhcccCcccccCcccccchHHHHHHHH
Confidence 11222333332210 0001111 1111111111223456788999888 7888999999999999999
Q ss_pred e---------eeecCCCCCCCHHHHHHHHHHhc-----ccCcEEEEccCCCHHHHH
Q 018394 145 S---------FNSTLPLTHVDEKLCYQILHEYK-----IHNAEVLFREDATVDDLI 186 (356)
Q Consensus 145 a---------l~~DEp~~~LD~~~~~~il~~l~-----~~~~~i~~thd~~~~~~~ 186 (356)
| +++||||.+||......+|..++ .+-+++++|||...+.+.
T Consensus 163 ARnLVt~PrLvfMDEPTGGLDVSVQARLLDllrgLv~~l~la~viVTHDl~VarLl 218 (258)
T COG4107 163 ARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRELGLAVVIVTHDLAVARLL 218 (258)
T ss_pred HHHhccCCceEEecCCCCCcchhhHHHHHHHHHHHHHhcCceEEEEechhHHHHHh
Confidence 8 89999999999987666665554 244899999999887765
No 294
>PRK13545 tagH teichoic acids export protein ATP-binding subunit; Provisional
Probab=99.79 E-value=8.8e-19 Score=174.77 Aligned_cols=148 Identities=16% Similarity=0.178 Sum_probs=106.7
Q ss_pred CCCCeEEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCccccccccccccceEEEECCEeecccCccccccccccCcccc
Q 018394 8 AGEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRG 87 (356)
Q Consensus 8 ~~~s~~v~~~~g~~v~LvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~~D~pGl~~~~~~~~~~~ 87 (356)
.+++|++.+ |++++|+|+|||||||||++|+|...| ..|.+.++|.+......++
T Consensus 41 ~nVSfsI~~--GEivgIiGpNGSGKSTLLkiLaGLl~P-----------~sGeI~I~G~~~~i~~~~~------------ 95 (549)
T PRK13545 41 NNISFEVPE--GEIVGIIGLNGSGKSTLSNLIAGVTMP-----------NKGTVDIKGSAALIAISSG------------ 95 (549)
T ss_pred eeeEEEEeC--CCEEEEEcCCCCCHHHHHHHHhCCCCC-----------CceEEEECCEeeeEEeccc------------
Confidence 578999999 889999999999999999999999876 7899999986521100000
Q ss_pred ccccccccchhHHHHHH--hcCChHHHHHHHHHHHHHccC--ccccccCcccccceecccee---------eeecCCCCC
Q 018394 88 RQVIAVSKSSDIVLMVL--DASKSEGHRQILTKELEAVGL--RLNKRPPQIYFKKKKTGGIS---------FNSTLPLTH 154 (356)
Q Consensus 88 ~~~~~~~~~~d~i~~v~--d~~~~~~~~~~i~~~L~~~~i--~l~~~~~~lS~g~~qr~~ia---------l~~DEp~~~ 154 (356)
....+...+.+.+.. .........+.+.++|+.+++ .+++++..||+||+||+++| +++||||++
T Consensus 96 --l~~~lTV~EnL~l~~~~~~~~~~e~~e~i~elLe~lgL~~~ld~~~~~LSGGQrQRVaLArAL~~~P~LLLLDEPTsg 173 (549)
T PRK13545 96 --LNGQLTGIENIELKGLMMGLTKEKIKEIIPEIIEFADIGKFIYQPVKTYSSGMKSRLGFAISVHINPDILVIDEALSV 173 (549)
T ss_pred --cCCCCcHHHHHHhhhhhcCCCHHHHHHHHHHHHHHcCChhHhhCCcccCCHHHHHHHHHHHHHHhCCCEEEEECCccc
Confidence 111122234433321 112222233456778888998 67899999999999999988 999999999
Q ss_pred CCHHHHHHH---HHHhcc-cCcEEEEccCCCH
Q 018394 155 VDEKLCYQI---LHEYKI-HNAEVLFREDATV 182 (356)
Q Consensus 155 LD~~~~~~i---l~~l~~-~~~~i~~thd~~~ 182 (356)
||+.....+ |.++.. +.++|++||+.+.
T Consensus 174 LD~~sr~~LlelL~el~~~G~TIIIVSHdl~~ 205 (549)
T PRK13545 174 GDQTFTKKCLDKMNEFKEQGKTIFFISHSLSQ 205 (549)
T ss_pred CCHHHHHHHHHHHHHHHhCCCEEEEEECCHHH
Confidence 999875554 444433 4589999999754
No 295
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=99.79 E-value=8.3e-19 Score=166.30 Aligned_cols=186 Identities=21% Similarity=0.212 Sum_probs=132.0
Q ss_pred CCCCeEEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCC-ccccccccccccceEEEECCEeecccCccccccccccCccc
Q 018394 8 AGEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSE-AASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGR 86 (356)
Q Consensus 8 ~~~s~~v~~~~g~~v~LvG~~gaGKSTLln~L~g~~~~-vs~~p~TT~~~~~G~i~~~g~~i~~~D~pGl~~~~~~~~~~ 86 (356)
+++||++.. |+.+||||.+|||||-..++++++.+. .+.+ -+|.+.|+|.++.-.....++.-....+++
T Consensus 27 k~isf~i~~--GEtlAlVGESGSGKSvTa~sim~LLp~~~~~~-------~sg~i~f~G~dll~~se~~lr~iRG~~I~M 97 (534)
T COG4172 27 KGISFDIEA--GETLALVGESGSGKSVTALSILGLLPSPAAAH-------PSGSILFDGEDLLAASERQLRGVRGNKIGM 97 (534)
T ss_pred ccceeeecC--CCEEEEEecCCCCccHHHHHHHHhcCCCcccC-------ccceeEEcChhhhcCCHHHHhhhcccceEE
Confidence 689999999 889999999999999999999998743 2222 468999999987655444443322234455
Q ss_pred cccccccccc-h----hHHHHHH---hcCChHHHHHHHHHHHHHccC-----ccccccCcccccceecccee--------
Q 018394 87 GRQVIAVSKS-S----DIVLMVL---DASKSEGHRQILTKELEAVGL-----RLNKRPPQIYFKKKKTGGIS-------- 145 (356)
Q Consensus 87 ~~~~~~~~~~-~----d~i~~v~---d~~~~~~~~~~i~~~L~~~~i-----~l~~~~~~lS~g~~qr~~ia-------- 145 (356)
.+|.+...-+ . .-+..++ .........+++.++|+.+|| +++.+|.+|||||+||+.||
T Consensus 98 IFQEPMtSLNPl~tIg~Qi~E~l~~Hrg~~~~~Ar~r~lelL~~VgI~~p~~rl~~yPHeLSGGqRQRVMIAMALan~P~ 177 (534)
T COG4172 98 IFQEPMTSLNPLHTIGKQLAEVLRLHRGLSRAAARARALELLELVGIPEPEKRLDAYPHELSGGQRQRVMIAMALANEPD 177 (534)
T ss_pred EecccccccCcHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCchhhhhhhCCcccCcchhhHHHHHHHHcCCCC
Confidence 5554321111 0 1111111 222334556788899999999 68999999999999999998
Q ss_pred -eeecCCCCCCCHHHHHHHH---HHhc--ccCcEEEEccCCCHHHHHHHHhccccccceEEEeecCCCCChh
Q 018394 146 -FNSTLPLTHVDEKLCYQIL---HEYK--IHNAEVLFREDATVDDLIDVIEGNRKYMKCVYVYNKIDVIGID 211 (356)
Q Consensus 146 -l~~DEp~~~LD~~~~~~il---~~l~--~~~~~i~~thd~~~~~~~~~i~~~~~~~p~i~v~NK~Dl~~~~ 211 (356)
+++||||++||.....++| +++. .+-+++++|||.++...+ .+.+.|+.+..+....
T Consensus 178 lLIADEPTTALDVtvQaQIL~Ll~~Lq~~~gMa~lfITHDL~iVr~~---------ADrV~VM~~G~ivE~~ 240 (534)
T COG4172 178 LLIADEPTTALDVTVQAQILDLLKELQAELGMAILFITHDLGIVRKF---------ADRVYVMQHGEIVETG 240 (534)
T ss_pred eEeecCCcchhhhhhHHHHHHHHHHHHHHhCcEEEEEeccHHHHHHh---------hhhEEEEeccEEeecC
Confidence 9999999999987655554 4444 345999999999875433 2567888888876443
No 296
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=99.79 E-value=6.7e-19 Score=158.21 Aligned_cols=163 Identities=13% Similarity=0.056 Sum_probs=108.4
Q ss_pred CCCCeEEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCccccccccccccceEEEECCEeecccCccccccccccCcccc
Q 018394 8 AGEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRG 87 (356)
Q Consensus 8 ~~~s~~v~~~~g~~v~LvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~~D~pGl~~~~~~~~~~~ 87 (356)
.+++|++.+ |+.++|+|+||||||||+++|+|...+ ..|.+.++|.++.-.+... ....+++.
T Consensus 25 ~~isl~i~~--G~~~~i~G~nGsGKSTLl~~l~Gl~~~-----------~~G~i~~~g~~~~~~~~~~----~~~~i~~v 87 (207)
T cd03369 25 KNVSFKVKA--GEKIGIVGRTGAGKSTLILALFRFLEA-----------EEGKIEIDGIDISTIPLED----LRSSLTII 87 (207)
T ss_pred cCceEEECC--CCEEEEECCCCCCHHHHHHHHhcccCC-----------CCCeEEECCEEhHHCCHHH----HHhhEEEE
Confidence 689999999 889999999999999999999999866 7899999998764322111 11233444
Q ss_pred ccccccccchhHHHHHHhcCChHHHHHHHHHHHHHccCccccccCcccccceecccee---------eeecCCCCCCCHH
Q 018394 88 RQVIAVSKSSDIVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGIS---------FNSTLPLTHVDEK 158 (356)
Q Consensus 88 ~~~~~~~~~~d~i~~v~d~~~~~~~~~~i~~~L~~~~i~l~~~~~~lS~g~~qr~~ia---------l~~DEp~~~LD~~ 158 (356)
.|....+.. .+...+ ...... ..+.+.+.++ +++.+..||+|++||++++ +++||||++||+.
T Consensus 88 ~q~~~~~~~-tv~~~l-~~~~~~-~~~~~~~~l~-----~~~~~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~ 159 (207)
T cd03369 88 PQDPTLFSG-TIRSNL-DPFDEY-SDEEIYGALR-----VSEGGLNLSQGQRQLLCLARALLKRPRVLVLDEATASIDYA 159 (207)
T ss_pred ecCCcccCc-cHHHHh-cccCCC-CHHHHHHHhh-----ccCCCCcCCHHHHHHHHHHHHHhhCCCEEEEeCCcccCCHH
Confidence 443322221 221111 111111 1122333333 4678899999999999998 9999999999998
Q ss_pred HHHHH---HHHhcccCcEEEEccCCCHHHHHHHHhccccccceEEEeecC
Q 018394 159 LCYQI---LHEYKIHNAEVLFREDATVDDLIDVIEGNRKYMKCVYVYNKI 205 (356)
Q Consensus 159 ~~~~i---l~~l~~~~~~i~~thd~~~~~~~~~i~~~~~~~p~i~v~NK~ 205 (356)
....+ |+.+..+.+++++||+...... +..++++++.
T Consensus 160 ~~~~l~~~l~~~~~~~tiii~th~~~~~~~----------~d~v~~l~~g 199 (207)
T cd03369 160 TDALIQKTIREEFTNSTILTIAHRLRTIID----------YDKILVMDAG 199 (207)
T ss_pred HHHHHHHHHHHhcCCCEEEEEeCCHHHHhh----------CCEEEEEECC
Confidence 85544 4444344589999999764321 2556666643
No 297
>PRK14246 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.79 E-value=1.2e-18 Score=161.93 Aligned_cols=159 Identities=20% Similarity=0.174 Sum_probs=107.4
Q ss_pred CCCCeEEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCccccccccccccceEEEECC------EeecccCccccccccc
Q 018394 8 AGEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYND------TKIQLLDLPGIIEGAS 81 (356)
Q Consensus 8 ~~~s~~v~~~~g~~v~LvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g------~~i~~~D~pGl~~~~~ 81 (356)
.++||.+.+ |++++|+|+|||||||||++|+|...+ ..|.+.++| .++.-.+.+ ...
T Consensus 27 ~~vs~~i~~--Ge~~~i~G~nGsGKSTLl~~iaG~~~~-----------~~G~v~~~G~~~~~g~~~~~~~~~----~~~ 89 (257)
T PRK14246 27 KDITIKIPN--NSIFGIMGPSGSGKSTLLKVLNRLIEI-----------YDSKIKVDGKVLYFGKDIFQIDAI----KLR 89 (257)
T ss_pred eceEEEEcC--CCEEEEECCCCCCHHHHHHHHhCCCCC-----------CcCceeEcCEEEECCcccccCCHH----HHh
Confidence 689999999 889999999999999999999999866 565555554 332211110 011
Q ss_pred cCccccccccccccc---hhHHHHHHhc--CC-hHHHHHHHHHHHHHccC------ccccccCcccccceecccee----
Q 018394 82 EGKGRGRQVIAVSKS---SDIVLMVLDA--SK-SEGHRQILTKELEAVGL------RLNKRPPQIYFKKKKTGGIS---- 145 (356)
Q Consensus 82 ~~~~~~~~~~~~~~~---~d~i~~v~d~--~~-~~~~~~~i~~~L~~~~i------~l~~~~~~lS~g~~qr~~ia---- 145 (356)
..+++..+....+.. .+.+.+.... .. .......+.+.++.+++ .+++.+..||+|++||+.|+
T Consensus 90 ~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~qrl~laral~ 169 (257)
T PRK14246 90 KEVGMVFQQPNPFPHLSIYDNIAYPLKSHGIKEKREIKKIVEECLRKVGLWKEVYDRLNSPASQLSGGQQQRLTIARALA 169 (257)
T ss_pred cceEEEccCCccCCCCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCccchhhhcCCcccCCHHHHHHHHHHHHHH
Confidence 233444443333322 3444333221 11 12223457788888887 24678899999999999998
Q ss_pred -----eeecCCCCCCCHHHH---HHHHHHhcccCcEEEEccCCCHH
Q 018394 146 -----FNSTLPLTHVDEKLC---YQILHEYKIHNAEVLFREDATVD 183 (356)
Q Consensus 146 -----l~~DEp~~~LD~~~~---~~il~~l~~~~~~i~~thd~~~~ 183 (356)
+++||||++||.... .+++..+....+++++||+....
T Consensus 170 ~~P~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tiilvsh~~~~~ 215 (257)
T PRK14246 170 LKPKVLLMDEPTSMIDIVNSQAIEKLITELKNEIAIVIVSHNPQQV 215 (257)
T ss_pred cCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCcEEEEEECCHHHH
Confidence 999999999999874 45555554456999999997543
No 298
>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.
Probab=99.79 E-value=4e-19 Score=186.77 Aligned_cols=170 Identities=17% Similarity=0.216 Sum_probs=121.2
Q ss_pred CCCCeEEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCccccccccccccceEEEECCEeecccCccccccccccCcccc
Q 018394 8 AGEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRG 87 (356)
Q Consensus 8 ~~~s~~v~~~~g~~v~LvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~~D~pGl~~~~~~~~~~~ 87 (356)
+++||++++ |+.+||+|+||||||||++.|+|...| .+|.|.++|.++..++...++ ..++.+
T Consensus 482 ~~i~l~i~~--G~~iaIvG~sGsGKSTLlklL~gl~~p-----------~~G~I~idg~~l~~~~~~~lr----~~i~~v 544 (694)
T TIGR03375 482 DNVSLTIRP--GEKVAIIGRIGSGKSTLLKLLLGLYQP-----------TEGSVLLDGVDIRQIDPADLR----RNIGYV 544 (694)
T ss_pred eeeeEEECC--CCEEEEECCCCCCHHHHHHHHhcCCCC-----------CCceEEECCEEhhhCCHHHHH----hccEEE
Confidence 689999999 889999999999999999999999877 899999999998877655443 234555
Q ss_pred ccccccccc--hhHHHHHHhcCChHHHHHHHHHHHHHccC-------------ccccccCcccccceecccee-------
Q 018394 88 RQVIAVSKS--SDIVLMVLDASKSEGHRQILTKELEAVGL-------------RLNKRPPQIYFKKKKTGGIS------- 145 (356)
Q Consensus 88 ~~~~~~~~~--~d~i~~v~d~~~~~~~~~~i~~~L~~~~i-------------~l~~~~~~lS~g~~qr~~ia------- 145 (356)
.|....+.. .|++.+. .+....+.+.+.++..++ .+...-..||+||+||+++|
T Consensus 545 ~Q~~~lf~~TI~eNi~~~----~~~~~~~~i~~a~~~~~l~~~i~~lp~gl~T~i~e~G~~LSgGQrQRlalARall~~p 620 (694)
T TIGR03375 545 PQDPRLFYGTLRDNIALG----APYADDEEILRAAELAGVTEFVRRHPDGLDMQIGERGRSLSGGQRQAVALARALLRDP 620 (694)
T ss_pred CCChhhhhhhHHHHHhCC----CCCCCHHHHHHHHHHcChHHHHHhCcccccceecCCCCCCCHHHHHHHHHHHHHhcCC
Confidence 555544432 3333221 111123344555555544 22334457999999999998
Q ss_pred --eeecCCCCCCCHHHHHHHHHHhc---ccCcEEEEccCCCHHHHHHHHhccccccceEEEeecCCCC
Q 018394 146 --FNSTLPLTHVDEKLCYQILHEYK---IHNAEVLFREDATVDDLIDVIEGNRKYMKCVYVYNKIDVI 208 (356)
Q Consensus 146 --l~~DEp~~~LD~~~~~~il~~l~---~~~~~i~~thd~~~~~~~~~i~~~~~~~p~i~v~NK~Dl~ 208 (356)
+++||||++||+++...+.+.+. .+.|++++||+.+... ..+.|+++++.-+.
T Consensus 621 ~iliLDE~Ts~LD~~te~~i~~~l~~~~~~~T~iiItHrl~~~~----------~~D~iivl~~G~i~ 678 (694)
T TIGR03375 621 PILLLDEPTSAMDNRSEERFKDRLKRWLAGKTLVLVTHRTSLLD----------LVDRIIVMDNGRIV 678 (694)
T ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHHhCCCEEEEEecCHHHHH----------hCCEEEEEeCCEEE
Confidence 99999999999998666655544 4579999999985432 23677888765443
No 299
>PRK14257 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.79 E-value=1.1e-18 Score=167.62 Aligned_cols=182 Identities=15% Similarity=0.095 Sum_probs=120.6
Q ss_pred CCCCeEEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCccccccccccccceEEEECCEeecccCccccccccccCcccc
Q 018394 8 AGEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRG 87 (356)
Q Consensus 8 ~~~s~~v~~~~g~~v~LvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~~D~pGl~~~~~~~~~~~ 87 (356)
++++|++.+ |+.+||+|+||||||||+++|+|...+..+ .|..|.|.++|.++...+ .+.. .....+++.
T Consensus 99 ~~is~~I~~--Ge~v~IvG~~GsGKSTLl~~L~g~~~~~~~------~p~~G~I~idG~~i~~~~-~~~~-~lr~~i~~v 168 (329)
T PRK14257 99 HDLNLDIKR--NKVTAFIGPSGCGKSTFLRNLNQLNDLIEG------TSHEGEIYFLGTNTRSKK-ISSL-ELRTRIGMV 168 (329)
T ss_pred eeeEEEEcC--CCEEEEECCCCCCHHHHHHHHhccccccCC------CCCceEEEECCEEccccc-cchH-hhhccEEEE
Confidence 689999999 889999999999999999999998743110 136899999999874211 1110 011234444
Q ss_pred cccccccc--chhHHHHHHh--cCChHH-HHHHHHHHHHHccC------ccccccCcccccceecccee---------ee
Q 018394 88 RQVIAVSK--SSDIVLMVLD--ASKSEG-HRQILTKELEAVGL------RLNKRPPQIYFKKKKTGGIS---------FN 147 (356)
Q Consensus 88 ~~~~~~~~--~~d~i~~v~d--~~~~~~-~~~~i~~~L~~~~i------~l~~~~~~lS~g~~qr~~ia---------l~ 147 (356)
.|....+. ..+++.+... ...... ..+.+.+.|+.+++ .++.+...||+||+||++|| ++
T Consensus 169 ~q~~~~~~~ti~eNi~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~l~~~~~~~~~~LSgGqkqRl~LARAl~~~p~IlL 248 (329)
T PRK14257 169 FQKPTPFEMSIFDNVAYGPRNNGINDRKILEKIVEKSLKSAALWDEVKDDLDKAGNALSGGQQQRLCIARAIALEPEVLL 248 (329)
T ss_pred ecCCccCCCcHHHHHHhHHHhcCCChHHHHHHHHHHHHHHcCCcchhhhhhhCCcccCCHHHHHHHHHHHHHHhCCCEEE
Confidence 44443332 2344543221 111111 12235666777765 36788899999999999998 99
Q ss_pred ecCCCCCCCHHHHH---HHHHHhcccCcEEEEccCCCHHHHHHHHhccccccceEEEeecCCCC
Q 018394 148 STLPLTHVDEKLCY---QILHEYKIHNAEVLFREDATVDDLIDVIEGNRKYMKCVYVYNKIDVI 208 (356)
Q Consensus 148 ~DEp~~~LD~~~~~---~il~~l~~~~~~i~~thd~~~~~~~~~i~~~~~~~p~i~v~NK~Dl~ 208 (356)
+||||++||+.... ++++.+..+.|++++||+.....- .+..+++++..-+.
T Consensus 249 LDEPts~LD~~~~~~i~~~i~~l~~~~Tii~iTH~l~~i~~---------~~Driivl~~G~i~ 303 (329)
T PRK14257 249 MDEPTSALDPIATAKIEELILELKKKYSIIIVTHSMAQAQR---------ISDETVFFYQGWIE 303 (329)
T ss_pred EeCCcccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHH---------hCCEEEEEECCEEE
Confidence 99999999998744 445555455799999999754321 13677888766544
No 300
>PRK14265 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.79 E-value=1.1e-18 Score=163.70 Aligned_cols=177 Identities=14% Similarity=0.128 Sum_probs=114.7
Q ss_pred CCCCeEEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCccccccccccccceEEEECCEeecccCccccccccccCcccc
Q 018394 8 AGEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRG 87 (356)
Q Consensus 8 ~~~s~~v~~~~g~~v~LvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~~D~pGl~~~~~~~~~~~ 87 (356)
.+++|++.+ |++++|+|+||||||||+++|+|...+. |. .+..|.+.++|.++...+.. .. .....+++.
T Consensus 37 ~~vs~~i~~--Ge~~~IiG~nGsGKSTLl~~l~Gl~~~~---~~---~~~~G~i~~~g~~l~~~~~~-~~-~~~~~i~~v 106 (274)
T PRK14265 37 VDVHLKIPA--KKIIAFIGPSGCGKSTLLRCFNRMNDLI---PG---AKVEGRLLYRDRNIYDSQIN-SV-KLRRQVGMV 106 (274)
T ss_pred eeeeeEEcC--CCEEEEECCCCCCHHHHHHHHhcccccc---cC---CCcCceEEECCEecccccch-hH-HHhhcEEEE
Confidence 588999999 8899999999999999999999986430 00 02479999999876421111 00 111233444
Q ss_pred cccccccc--chhHHHHHHhcCC-hHHHHHHHHHHHHHccC------ccccccCcccccceecccee---------eeec
Q 018394 88 RQVIAVSK--SSDIVLMVLDASK-SEGHRQILTKELEAVGL------RLNKRPPQIYFKKKKTGGIS---------FNST 149 (356)
Q Consensus 88 ~~~~~~~~--~~d~i~~v~d~~~-~~~~~~~i~~~L~~~~i------~l~~~~~~lS~g~~qr~~ia---------l~~D 149 (356)
.|....+. ..+.+.+...... .....+.+.+.++.+++ .+++++..||+||+||+++| +++|
T Consensus 107 ~q~~~l~~~tv~~nl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgGq~qrv~LAraL~~~p~lllLD 186 (274)
T PRK14265 107 FQRPNPFPKSIYENIAFAPRANGYKGNLDELVEDSLRRAAIWEEVKDKLKEKGTALSGGQQQRLCIARAIAMKPDVLLMD 186 (274)
T ss_pred ccCCccccccHHHHHHhHHHhcCchHHHHHHHHHHHHHcccchhhHHHhcCCcccCCHHHHHHHHHHHHHhhCCCEEEEe
Confidence 44332222 2333332211111 11122345566777665 35678899999999999998 9999
Q ss_pred CCCCCCCHHHHHH---HHHHhcccCcEEEEccCCCHHHHHHHHhccccccceEEEee
Q 018394 150 LPLTHVDEKLCYQ---ILHEYKIHNAEVLFREDATVDDLIDVIEGNRKYMKCVYVYN 203 (356)
Q Consensus 150 Ep~~~LD~~~~~~---il~~l~~~~~~i~~thd~~~~~~~~~i~~~~~~~p~i~v~N 203 (356)
|||++||+..... +|..+....+++++||+.+.... .+..+++++
T Consensus 187 EPt~~LD~~~~~~l~~~L~~~~~~~tiii~sH~~~~~~~---------~~d~i~~l~ 234 (274)
T PRK14265 187 EPCSALDPISTRQVEELCLELKEQYTIIMVTHNMQQASR---------VADWTAFFN 234 (274)
T ss_pred CCcccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHH---------hCCEEEEEe
Confidence 9999999988554 44444444689999999764432 236677776
No 301
>TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit. This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown.
Probab=99.79 E-value=5.3e-19 Score=160.83 Aligned_cols=149 Identities=15% Similarity=0.101 Sum_probs=103.5
Q ss_pred eEEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCccccccccccccceEEEECCEeecccCccccccccccCcccccccc
Q 018394 12 FEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQVI 91 (356)
Q Consensus 12 ~~v~~~~g~~v~LvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~~D~pGl~~~~~~~~~~~~~~~ 91 (356)
|++.+ |++++|+|+||||||||+++|+|...+ ..|.+.++|.++.. ....+++..|..
T Consensus 1 l~i~~--Ge~~~l~G~nGsGKSTLl~~l~G~~~~-----------~~G~i~~~g~~~~~---------~~~~i~~v~q~~ 58 (223)
T TIGR03771 1 LSADK--GELLGLLGPNGAGKTTLLRAILGLIPP-----------AKGTVKVAGASPGK---------GWRHIGYVPQRH 58 (223)
T ss_pred CccCC--CcEEEEECCCCCCHHHHHHHHhCCCCC-----------CCceEEECCccchH---------hhCcEEEecccc
Confidence 45666 789999999999999999999999766 78999999976421 011122223322
Q ss_pred cc-----ccchhHHHHHHh----cC--ChHHHHHHHHHHHHHccC--ccccccCcccccceecccee---------eeec
Q 018394 92 AV-----SKSSDIVLMVLD----AS--KSEGHRQILTKELEAVGL--RLNKRPPQIYFKKKKTGGIS---------FNST 149 (356)
Q Consensus 92 ~~-----~~~~d~i~~v~d----~~--~~~~~~~~i~~~L~~~~i--~l~~~~~~lS~g~~qr~~ia---------l~~D 149 (356)
.. ....+.+.+... .. ......+.+.+.++.+++ ..++.+..||+|++||++++ +++|
T Consensus 59 ~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llilD 138 (223)
T TIGR03771 59 EFAWDFPISVAHTVMSGRTGHIGWLRRPCVADFAAVRDALRRVGLTELADRPVGELSGGQRQRVLVARALATRPSVLLLD 138 (223)
T ss_pred cccCCCCccHHHHHHhccccccccccCCcHHHHHHHHHHHHHhCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEe
Confidence 11 112233322111 00 112234567888999998 67888999999999999988 9999
Q ss_pred CCCCCCCHHHHHHH---HHHhc-ccCcEEEEccCCCH
Q 018394 150 LPLTHVDEKLCYQI---LHEYK-IHNAEVLFREDATV 182 (356)
Q Consensus 150 Ep~~~LD~~~~~~i---l~~l~-~~~~~i~~thd~~~ 182 (356)
|||++||+.....+ +.++. .+.+++++||+...
T Consensus 139 EP~~~LD~~~~~~l~~~l~~~~~~~~tvii~sH~~~~ 175 (223)
T TIGR03771 139 EPFTGLDMPTQELLTELFIELAGAGTAILMTTHDLAQ 175 (223)
T ss_pred CCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHH
Confidence 99999999885544 44443 24589999999763
No 302
>KOG0057 consensus Mitochondrial Fe/S cluster exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.79 E-value=4.9e-19 Score=173.55 Aligned_cols=159 Identities=18% Similarity=0.204 Sum_probs=118.2
Q ss_pred CCCCeEEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCccccccccccccceEEEECCEeecccCccccccccccCcccc
Q 018394 8 AGEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRG 87 (356)
Q Consensus 8 ~~~s~~v~~~~g~~v~LvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~~D~pGl~~~~~~~~~~~ 87 (356)
+|+||+|++ |+.|||+|+|||||||++|+|.+... .+|.|+++|+++.-++.-.++. -++.+
T Consensus 369 ~gvsf~I~k--GekVaIvG~nGsGKSTilr~LlrF~d------------~sG~I~IdG~dik~~~~~SlR~----~Ig~V 430 (591)
T KOG0057|consen 369 KGVSFTIPK--GEKVAIVGSNGSGKSTILRLLLRFFD------------YSGSILIDGQDIKEVSLESLRQ----SIGVV 430 (591)
T ss_pred cceeEEecC--CCEEEEECCCCCCHHHHHHHHHHHhc------------cCCcEEECCeeHhhhChHHhhh----heeEe
Confidence 799999999 88999999999999999999999864 5899999999998877655542 35556
Q ss_pred ccccccccchhHHHHHHhcCChHHHHHHHHHHHHHccC--c-----------cccccCcccccceecccee---------
Q 018394 88 RQVIAVSKSSDIVLMVLDASKSEGHRQILTKELEAVGL--R-----------LNKRPPQIYFKKKKTGGIS--------- 145 (356)
Q Consensus 88 ~~~~~~~~~~d~i~~v~d~~~~~~~~~~i~~~L~~~~i--~-----------l~~~~~~lS~g~~qr~~ia--------- 145 (356)
+|...++. |-|++-+.-..+....+.+.++.+++++ . ...+-..|||||+||++++
T Consensus 431 PQd~~LFn--dTIl~NI~YGn~sas~eeV~e~~k~a~~hd~i~~l~~GY~T~VGerG~~LSGGekQrvslaRa~lKda~I 508 (591)
T KOG0057|consen 431 PQDSVLFN--DTILYNIKYGNPSASDEEVVEACKRAGLHDVISRLPDGYQTLVGERGLMLSGGEKQRVSLARAFLKDAPI 508 (591)
T ss_pred CCcccccc--hhHHHHhhcCCCCcCHHHHHHHHHHcCcHHHHHhccccchhhHhhcccccccchHHHHHHHHHHhcCCCe
Confidence 66544443 2233333322333334556677777777 1 2223457999999999998
Q ss_pred eeecCCCCCCCHHHHHHHHHHhc---ccCcEEEEccCCCHHHHH
Q 018394 146 FNSTLPLTHVDEKLCYQILHEYK---IHNAEVLFREDATVDDLI 186 (356)
Q Consensus 146 l~~DEp~~~LD~~~~~~il~~l~---~~~~~i~~thd~~~~~~~ 186 (356)
+++||||++||.++-.++++.+. .+.|+|++-|+.+....+
T Consensus 509 l~~DEaTS~LD~~TE~~i~~~i~~~~~~rTvI~IvH~l~ll~~~ 552 (591)
T KOG0057|consen 509 LLLDEATSALDSETEREILDMIMDVMSGRTVIMIVHRLDLLKDF 552 (591)
T ss_pred EEecCcccccchhhHHHHHHHHHHhcCCCeEEEEEecchhHhcC
Confidence 89999999999998777776654 466999999998765443
No 303
>PRK14263 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.79 E-value=1.5e-18 Score=161.66 Aligned_cols=165 Identities=15% Similarity=0.117 Sum_probs=110.6
Q ss_pred CCCCeEEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCccccccccccccceEEEECCEeecccCccccccccccCcccc
Q 018394 8 AGEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRG 87 (356)
Q Consensus 8 ~~~s~~v~~~~g~~v~LvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~~D~pGl~~~~~~~~~~~ 87 (356)
++++|++.+ |++++|+|+||||||||+++|+|...|..++ +..|.+.++|.++...+..- . .....++..
T Consensus 25 ~~vs~~i~~--Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~------~~~G~i~~~g~~i~~~~~~~-~-~~~~~i~~v 94 (261)
T PRK14263 25 RDSHVPIRK--NEITGFIGPSGCGKSTVLRSLNRMNDLVKGF------RFEGHVHFLGQDVYGKGVDP-V-VVRRYIGMV 94 (261)
T ss_pred eeeEEEEcC--CCEEEEECCCCCCHHHHHHHHHcccccccCC------CCceEEEECCEeccccccch-H-hhhhceEEE
Confidence 688999999 8899999999999999999999997542111 25799999998764221110 0 011223333
Q ss_pred ccccccc--cchhHHHHHHhcCC-hHHHHHHHHHHHHHccC------ccccccCcccccceecccee---------eeec
Q 018394 88 RQVIAVS--KSSDIVLMVLDASK-SEGHRQILTKELEAVGL------RLNKRPPQIYFKKKKTGGIS---------FNST 149 (356)
Q Consensus 88 ~~~~~~~--~~~d~i~~v~d~~~-~~~~~~~i~~~L~~~~i------~l~~~~~~lS~g~~qr~~ia---------l~~D 149 (356)
.|....+ ...+.+.+...... .....+.+.+.|+.+++ ..++.+..||+|++||+.++ +++|
T Consensus 95 ~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LS~G~~qrv~laral~~~p~llllD 174 (261)
T PRK14263 95 FQQPNPFSMSIFDNVAFGLRLNRYKGDLGDRVKHALQGAALWDEVKDKLKVSGLSLSGGQQQRLCIARAIATEPEVLLLD 174 (261)
T ss_pred ecCCccccccHHHHHHHHHhhcCchHHHHHHHHHHHHHcCCchhhhhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEe
Confidence 3332222 22344433222111 11223467788888887 23466789999999999988 9999
Q ss_pred CCCCCCCHHHHHHH---HHHhcccCcEEEEccCCCH
Q 018394 150 LPLTHVDEKLCYQI---LHEYKIHNAEVLFREDATV 182 (356)
Q Consensus 150 Ep~~~LD~~~~~~i---l~~l~~~~~~i~~thd~~~ 182 (356)
|||++||+....++ ++++..+.+++++||+...
T Consensus 175 EPtsgLD~~~~~~l~~~l~~~~~~~tii~isH~~~~ 210 (261)
T PRK14263 175 EPCSALDPIATRRVEELMVELKKDYTIALVTHNMQQ 210 (261)
T ss_pred CCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHH
Confidence 99999999885544 4444444589999999764
No 304
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=99.79 E-value=7.1e-19 Score=197.96 Aligned_cols=174 Identities=16% Similarity=0.205 Sum_probs=127.5
Q ss_pred CCCCeEEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCccccccccccccceEEEECCEeecccCccccccccccCcccc
Q 018394 8 AGEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRG 87 (356)
Q Consensus 8 ~~~s~~v~~~~g~~v~LvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~~D~pGl~~~~~~~~~~~ 87 (356)
++++|++.+ |++++|+|+||||||||+++|+|...| .+|.+.++|.++.. +.. .....++..
T Consensus 947 ~~lsl~I~~--Gei~aLLG~NGAGKSTLLkiLaGLl~P-----------tsG~I~i~G~dI~~-~~~----~~r~~IG~~ 1008 (2272)
T TIGR01257 947 DRLNITFYE--NQITAFLGHNGAGKTTTLSILTGLLPP-----------TSGTVLVGGKDIET-NLD----AVRQSLGMC 1008 (2272)
T ss_pred EeeEEEEcC--CcEEEEECCCCChHHHHHHHHhcCCCC-----------CceEEEECCEECcc-hHH----HHhhcEEEE
Confidence 589999999 889999999999999999999999877 89999999988742 211 112334555
Q ss_pred cccccccc---chhHHHHHHhcC--ChHHHHHHHHHHHHHccC--ccccccCcccccceecccee---------eeecCC
Q 018394 88 RQVIAVSK---SSDIVLMVLDAS--KSEGHRQILTKELEAVGL--RLNKRPPQIYFKKKKTGGIS---------FNSTLP 151 (356)
Q Consensus 88 ~~~~~~~~---~~d~i~~v~d~~--~~~~~~~~i~~~L~~~~i--~l~~~~~~lS~g~~qr~~ia---------l~~DEp 151 (356)
.|....+. ..+.+.+..... ......+.+.+.|+.+++ ..++++.+||+||+||+++| +++|||
T Consensus 1009 pQ~~~L~~~LTV~E~L~f~~~lkg~~~~~~~~~v~~lL~~vgL~~~~~~~~~~LSGGqKQRLsLArALi~~PkVLLLDEP 1088 (2272)
T TIGR01257 1009 PQHNILFHHLTVAEHILFYAQLKGRSWEEAQLEMEAMLEDTGLHHKRNEEAQDLSGGMQRKLSVAIAFVGDAKVVVLDEP 1088 (2272)
T ss_pred ecCCcCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEECC
Confidence 55443333 345554433322 222334567889999999 67899999999999999988 999999
Q ss_pred CCCCCHHHH---HHHHHHhcccCcEEEEccCCCHHHHHHHHhccccccceEEEeecCCCC
Q 018394 152 LTHVDEKLC---YQILHEYKIHNAEVLFREDATVDDLIDVIEGNRKYMKCVYVYNKIDVI 208 (356)
Q Consensus 152 ~~~LD~~~~---~~il~~l~~~~~~i~~thd~~~~~~~~~i~~~~~~~p~i~v~NK~Dl~ 208 (356)
|++||+... .++|++++.+.++|++||+++..+.+ .+.++++++.-+.
T Consensus 1089 TSGLDp~sr~~l~~lL~~l~~g~TIIltTHdmdea~~l---------aDrI~iL~~GkL~ 1139 (2272)
T TIGR01257 1089 TSGVDPYSRRSIWDLLLKYRSGRTIIMSTHHMDEADLL---------GDRIAIISQGRLY 1139 (2272)
T ss_pred CcCCCHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHHh---------CCEEEEEECCEEE
Confidence 999999875 45555665556999999998765432 3566676665443
No 305
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=99.78 E-value=7.8e-19 Score=179.18 Aligned_cols=150 Identities=15% Similarity=0.117 Sum_probs=105.4
Q ss_pred CCCCeEEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCccccccccccccceEEEECCEeecccCccccccccccCcccc
Q 018394 8 AGEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRG 87 (356)
Q Consensus 8 ~~~s~~v~~~~g~~v~LvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~~D~pGl~~~~~~~~~~~ 87 (356)
+++||++.+ |++++|+|+||||||||+++|+|...| ..|.|.+++.. ..|+......
T Consensus 336 ~~is~~i~~--Ge~~~l~G~NGsGKSTLl~~i~G~~~p-----------~~G~i~~~~~~-----~i~~~~q~~~----- 392 (530)
T PRK15064 336 KNLNLLLEA--GERLAIIGENGVGKTTLLRTLVGELEP-----------DSGTVKWSENA-----NIGYYAQDHA----- 392 (530)
T ss_pred cCcEEEECC--CCEEEEECCCCCCHHHHHHHHhCCCCC-----------CCeEEEECCce-----EEEEEccccc-----
Confidence 578999999 889999999999999999999999866 78999987732 1111110000
Q ss_pred ccccccccchhHHHHHHhcCChHHHHHHHHHHHHHccC---ccccccCcccccceecccee---------eeecCCCCCC
Q 018394 88 RQVIAVSKSSDIVLMVLDASKSEGHRQILTKELEAVGL---RLNKRPPQIYFKKKKTGGIS---------FNSTLPLTHV 155 (356)
Q Consensus 88 ~~~~~~~~~~d~i~~v~d~~~~~~~~~~i~~~L~~~~i---~l~~~~~~lS~g~~qr~~ia---------l~~DEp~~~L 155 (356)
..+.......+.+... .. .....+.+.+.|+.+++ ..++++..||+||+||+.+| +++||||++|
T Consensus 393 ~~~~~~~t~~~~~~~~-~~--~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrv~la~al~~~p~lllLDEPt~~L 469 (530)
T PRK15064 393 YDFENDLTLFDWMSQW-RQ--EGDDEQAVRGTLGRLLFSQDDIKKSVKVLSGGEKGRMLFGKLMMQKPNVLVMDEPTNHM 469 (530)
T ss_pred ccCCCCCcHHHHHHHh-cc--CCccHHHHHHHHHHcCCChhHhcCcccccCHHHHHHHHHHHHHhcCCCEEEEcCCCCCC
Confidence 0000001112322211 11 11123457788999988 46889999999999999998 9999999999
Q ss_pred CHHHHHHHHHHhcc-cCcEEEEccCCCHH
Q 018394 156 DEKLCYQILHEYKI-HNAEVLFREDATVD 183 (356)
Q Consensus 156 D~~~~~~il~~l~~-~~~~i~~thd~~~~ 183 (356)
|+.....+++.+.. ..++|++|||....
T Consensus 470 D~~~~~~l~~~l~~~~~tvi~vsHd~~~~ 498 (530)
T PRK15064 470 DMESIESLNMALEKYEGTLIFVSHDREFV 498 (530)
T ss_pred CHHHHHHHHHHHHHCCCEEEEEeCCHHHH
Confidence 99987666665552 45999999997643
No 306
>PRK13546 teichoic acids export protein ATP-binding subunit; Provisional
Probab=99.78 E-value=1.9e-18 Score=161.07 Aligned_cols=148 Identities=15% Similarity=0.146 Sum_probs=103.7
Q ss_pred CCCCeEEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCccccccccccccceEEEECCEeecccCccccccccccCcccc
Q 018394 8 AGEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRG 87 (356)
Q Consensus 8 ~~~s~~v~~~~g~~v~LvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~~D~pGl~~~~~~~~~~~ 87 (356)
.+++|++.+ |++++|+|+||||||||+++|+|...+ ..|.+.++|........+++
T Consensus 41 ~~is~~i~~--Ge~~~liG~NGsGKSTLlk~L~Gl~~p-----------~~G~I~~~g~~~~~~~~~~~----------- 96 (264)
T PRK13546 41 DDISLKAYE--GDVIGLVGINGSGKSTLSNIIGGSLSP-----------TVGKVDRNGEVSVIAISAGL----------- 96 (264)
T ss_pred eeeEEEEcC--CCEEEEECCCCCCHHHHHHHHhCCcCC-----------CceEEEECCEEeEEecccCC-----------
Confidence 478999999 889999999999999999999999876 78999998852111011111
Q ss_pred ccccccccchhHHHHHHh--cCChHHHHHHHHHHHHHccC--ccccccCcccccceecccee---------eeecCCCCC
Q 018394 88 RQVIAVSKSSDIVLMVLD--ASKSEGHRQILTKELEAVGL--RLNKRPPQIYFKKKKTGGIS---------FNSTLPLTH 154 (356)
Q Consensus 88 ~~~~~~~~~~d~i~~v~d--~~~~~~~~~~i~~~L~~~~i--~l~~~~~~lS~g~~qr~~ia---------l~~DEp~~~ 154 (356)
.......+.+.+... ........+.+...++.+++ .+++.+..||+||+||++++ +++||||++
T Consensus 97 ---~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrv~Laral~~~p~iLlLDEPt~g 173 (264)
T PRK13546 97 ---SGQLTGIENIEFKMLCMGFKRKEIKAMTPKIIEFSELGEFIYQPVKKYSSGMRAKLGFSINITVNPDILVIDEALSV 173 (264)
T ss_pred ---CCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhcCCcccCCHHHHHHHHHHHHHhhCCCEEEEeCcccc
Confidence 001122333332211 12222233445667777777 67888999999999999988 999999999
Q ss_pred CCHHHHHH---HHHHhcc-cCcEEEEccCCCH
Q 018394 155 VDEKLCYQ---ILHEYKI-HNAEVLFREDATV 182 (356)
Q Consensus 155 LD~~~~~~---il~~l~~-~~~~i~~thd~~~ 182 (356)
||+..... ++..+.. +.++|++||+...
T Consensus 174 LD~~~~~~l~~~L~~~~~~g~tiIiisH~~~~ 205 (264)
T PRK13546 174 GDQTFAQKCLDKIYEFKEQNKTIFFVSHNLGQ 205 (264)
T ss_pred CCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHH
Confidence 99987544 4444433 4589999999754
No 307
>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional
Probab=99.78 E-value=1e-18 Score=157.92 Aligned_cols=161 Identities=12% Similarity=0.108 Sum_probs=106.5
Q ss_pred CCCCeEEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCccccccccccccceEEE-ECCEeecccCccccccccccCccc
Q 018394 8 AGEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIH-YNDTKIQLLDLPGIIEGASEGKGR 86 (356)
Q Consensus 8 ~~~s~~v~~~~g~~v~LvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~-~~g~~i~~~D~pGl~~~~~~~~~~ 86 (356)
+++||++++ |++++|+|+||||||||+++|+|...+ .+|.+. +++..+.+ | .
T Consensus 4 ~~vs~~i~~--Ge~~~l~G~NGsGKSTLlk~i~Gl~~~-----------~sG~i~~~~~~~~~~----~----------~ 56 (213)
T PRK15177 4 DKTDFVMGY--HEHIGILAAPGSGKTTLTRLLCGLDAP-----------DEGDFIGLRGDALPL----G----------A 56 (213)
T ss_pred eeeeEEEcC--CCEEEEECCCCCCHHHHHHHHhCCccC-----------CCCCEEEecCceecc----c----------c
Confidence 578999999 889999999999999999999999866 788886 66643311 1 0
Q ss_pred cccccccccchhHHHHHHhcCChHHHHHHHHHHHHHccC--ccccccCcccccceecccee---------eeecCCCCCC
Q 018394 87 GRQVIAVSKSSDIVLMVLDASKSEGHRQILTKELEAVGL--RLNKRPPQIYFKKKKTGGIS---------FNSTLPLTHV 155 (356)
Q Consensus 87 ~~~~~~~~~~~d~i~~v~d~~~~~~~~~~i~~~L~~~~i--~l~~~~~~lS~g~~qr~~ia---------l~~DEp~~~L 155 (356)
...+...+...+++.+........ ..+.....++.+++ ..++++..+|+||+||++++ +++|||++++
T Consensus 57 ~~~l~~~ltv~enl~~~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~lS~G~~qrv~la~al~~~p~llllDEP~~~l 135 (213)
T PRK15177 57 NSFILPGLTGEENARMMASLYGLD-GDEFSHFCYQLTQLEQCYTDRVSEYSVTMKTHLAFAINLLLPCRLYIADGKLYTG 135 (213)
T ss_pred ccccCCcCcHHHHHHHHHHHcCCC-HHHHHHHHHHHhChhHHhhchHhhcCHHHHHHHHHHHHHhcCCCEEEECCCCccC
Confidence 011221223345554433322111 11112222344555 56788899999999999887 8999999999
Q ss_pred CHHHHHHHHHHhc---ccCcEEEEccCCCHHHHHHHHhccccccceEEEeecC
Q 018394 156 DEKLCYQILHEYK---IHNAEVLFREDATVDDLIDVIEGNRKYMKCVYVYNKI 205 (356)
Q Consensus 156 D~~~~~~il~~l~---~~~~~i~~thd~~~~~~~~~i~~~~~~~p~i~v~NK~ 205 (356)
|+.....+++.+. ...+++++||+...... .+..+++++..
T Consensus 136 D~~~~~~~~~~l~~~~~~~~ii~vsH~~~~~~~---------~~d~i~~l~~G 179 (213)
T PRK15177 136 DNATQLRMQAALACQLQQKGLIVLTHNPRLIKE---------HCHAFGVLLHG 179 (213)
T ss_pred CHHHHHHHHHHHHHHhhCCcEEEEECCHHHHHH---------hcCeeEEEECC
Confidence 9987655554332 34589999999865431 13456666654
No 308
>PRK14252 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.78 E-value=1.7e-18 Score=161.55 Aligned_cols=180 Identities=15% Similarity=0.049 Sum_probs=115.8
Q ss_pred CCCCeEEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCccccccccccccceEEEECCEeecccCccccc-cccccCccc
Q 018394 8 AGEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGII-EGASEGKGR 86 (356)
Q Consensus 8 ~~~s~~v~~~~g~~v~LvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~~D~pGl~-~~~~~~~~~ 86 (356)
.+++|++.+ |++++|+|+||||||||+++|+|...+ +|++ +.+|.+.++|.++...+. ... ......+++
T Consensus 33 ~~vs~~i~~--Ge~~~i~G~nGsGKSTLl~~l~Gl~~~---~~~~---~~sG~i~~~g~~~~~~~~-~~~~~~~~~~i~~ 103 (265)
T PRK14252 33 KNINMMVHE--KQVTALIGPSGCGKSTFLRCFNRMHDL---YPGN---HYEGEIILHPDNVNILSP-EVDPIEVRMRISM 103 (265)
T ss_pred eeeEEEEcC--CcEEEEECCCCCCHHHHHHHHhcccCC---CCCC---CcccEEEEcCcccccccc-ccCHHHHhccEEE
Confidence 688999999 889999999999999999999998754 1222 368999999876643210 000 001122333
Q ss_pred ccccccccc--chhHHHHHHhcCC--h-HHHHHHHHHHHHHccC------ccccccCcccccceecccee---------e
Q 018394 87 GRQVIAVSK--SSDIVLMVLDASK--S-EGHRQILTKELEAVGL------RLNKRPPQIYFKKKKTGGIS---------F 146 (356)
Q Consensus 87 ~~~~~~~~~--~~d~i~~v~d~~~--~-~~~~~~i~~~L~~~~i------~l~~~~~~lS~g~~qr~~ia---------l 146 (356)
..+....+. ..+.+.+...... . ....+.+.+.++.+++ .+++.+..||+|++||+.|+ +
T Consensus 104 ~~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~ll 183 (265)
T PRK14252 104 VFQKPNPFPKSIFENVAYGLRIRGVKRRSILEERVENALRNAALWDEVKDRLGDLAFNLSGGQQQRLCIARALATDPEIL 183 (265)
T ss_pred EccCCcCCcchHHHHHHhHHHHcCCChHHHHHHHHHHHHHHcCCchhhhHHHhCCcccCCHHHHHHHHHHHHHHcCCCEE
Confidence 343322222 2344433322111 1 1122456666777665 34677899999999999988 9
Q ss_pred eecCCCCCCCHHHHHHH---HHHhcccCcEEEEccCCCHHHHHHHHhccccccceEEEeecC
Q 018394 147 NSTLPLTHVDEKLCYQI---LHEYKIHNAEVLFREDATVDDLIDVIEGNRKYMKCVYVYNKI 205 (356)
Q Consensus 147 ~~DEp~~~LD~~~~~~i---l~~l~~~~~~i~~thd~~~~~~~~~i~~~~~~~p~i~v~NK~ 205 (356)
++||||++||......+ |..+....+++++||+.....- .+..+++++..
T Consensus 184 llDEPt~gLD~~~~~~l~~~l~~l~~~~tiiivth~~~~~~~---------~~d~i~~l~~G 236 (265)
T PRK14252 184 LFDEPTSALDPIATASIEELISDLKNKVTILIVTHNMQQAAR---------VSDYTAYMYMG 236 (265)
T ss_pred EEeCCCccCCHHHHHHHHHHHHHHHhCCEEEEEecCHHHHHH---------hCCEEEEEECC
Confidence 99999999999885544 4444444589999999754321 23556666654
No 309
>COG4586 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.78 E-value=5.6e-19 Score=160.02 Aligned_cols=180 Identities=18% Similarity=0.218 Sum_probs=125.7
Q ss_pred CCCCeEEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCccccccccccccceEEEECCEe-ec----ccCcccccccccc
Q 018394 8 AGEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTK-IQ----LLDLPGIIEGASE 82 (356)
Q Consensus 8 ~~~s~~v~~~~g~~v~LvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~-i~----~~D~pGl~~~~~~ 82 (356)
.++||++++ |++++++|+|||||||++++|||...| ..|.+.++|.. +. .++--|+.-
T Consensus 41 qdisf~IP~--G~ivgflGaNGAGKSTtLKmLTGll~p-----------~~G~v~V~G~~Pf~~~~~~~~~~~~v~---- 103 (325)
T COG4586 41 QDISFEIPK--GEIVGFLGANGAGKSTTLKMLTGLLLP-----------TSGKVRVNGKDPFRRREEYLRSIGLVM---- 103 (325)
T ss_pred heeeeecCC--CcEEEEEcCCCCcchhhHHHHhCcccc-----------CCCeEEecCcCcchhHHHHHHHHHHHh----
Confidence 589999999 889999999999999999999999877 89999999853 21 011111110
Q ss_pred Cccccccccccc---cchhHHHHHHhcCChHHHHHHHHHHHHHccC--ccccccCcccccceecccee---------eee
Q 018394 83 GKGRGRQVIAVS---KSSDIVLMVLDASKSEGHRQILTKELEAVGL--RLNKRPPQIYFKKKKTGGIS---------FNS 148 (356)
Q Consensus 83 ~~~~~~~~~~~~---~~~d~i~~v~d~~~~~~~~~~i~~~L~~~~i--~l~~~~~~lS~g~~qr~~ia---------l~~ 148 (356)
+.-.|..... +...+.-.+.+... ..-.++....-+.+++ .++.+...||.||+.|..++ +++
T Consensus 104 --gqk~ql~Wdlp~~ds~~v~~~Iy~Ipd-~~F~~r~~~l~eiLdl~~~lk~~vr~LSlGqRmraeLaaaLLh~p~VLfL 180 (325)
T COG4586 104 --GQKLQLWWDLPALDSLEVLKLIYEIPD-DEFAERLDFLTEILDLEGFLKWPVRKLSLGQRMRAELAAALLHPPKVLFL 180 (325)
T ss_pred --hhhheeeeechhhhhHHHHHHHHhCCH-HHHHHHHHHHHHHhcchhhhhhhhhhccchHHHHHHHHHHhcCCCcEEEe
Confidence 1111222211 22222223333322 2334566677777888 58999999999999999887 999
Q ss_pred cCCCCCCCHHH---HHHHHHHhcc--cCcEEEEccCCCH-HHHHHHHhccccccceEEEeecCCCCChhhHHHHh
Q 018394 149 TLPLTHVDEKL---CYQILHEYKI--HNAEVLFREDATV-DDLIDVIEGNRKYMKCVYVYNKIDVIGIDDVDKLA 217 (356)
Q Consensus 149 DEp~~~LD~~~---~~~il~~l~~--~~~~i~~thd~~~-~~~~~~i~~~~~~~p~i~v~NK~Dl~~~~~~~~l~ 217 (356)
||||-+||... ++++++++.. +.|++++||+.+. ..+ |..|+.+++.-+.....+..+.
T Consensus 181 DEpTvgLDV~aq~~ir~Flke~n~~~~aTVllTTH~~~di~~l----------c~rv~~I~~Gqlv~dg~l~~l~ 245 (325)
T COG4586 181 DEPTVGLDVNAQANIREFLKEYNEERQATVLLTTHIFDDIATL----------CDRVLLIDQGQLVFDGTLAQLQ 245 (325)
T ss_pred cCCccCcchhHHHHHHHHHHHHHHhhCceEEEEecchhhHHHh----------hhheEEeeCCcEeecccHHHHH
Confidence 99999999865 6777777773 4599999999653 333 3567888888777665565554
No 310
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=99.78 E-value=1.3e-18 Score=178.48 Aligned_cols=148 Identities=16% Similarity=0.163 Sum_probs=103.8
Q ss_pred CCCCeEEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCccccccccccccceEEEECCE-eecccCccccccccccCccc
Q 018394 8 AGEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDT-KIQLLDLPGIIEGASEGKGR 86 (356)
Q Consensus 8 ~~~s~~v~~~~g~~v~LvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~-~i~~~D~pGl~~~~~~~~~~ 86 (356)
.++||+|.+ |++++|+|+|||||||||++|+|...| ..|.|.+++. .+.++
T Consensus 24 ~~vs~~i~~--Ge~~~iiG~NGsGKSTLlk~i~G~~~p-----------~~G~i~~~~~~~i~~v--------------- 75 (556)
T PRK11819 24 KDISLSFFP--GAKIGVLGLNGAGKSTLLRIMAGVDKE-----------FEGEARPAPGIKVGYL--------------- 75 (556)
T ss_pred eCceEEECC--CCEEEEECCCCCCHHHHHHHHhCCCCC-----------CCceEEecCCCEEEEE---------------
Confidence 689999999 889999999999999999999999766 7899887642 12111
Q ss_pred ccccccc---ccchhHHHHHHh----------------c-C---------------------ChHHHHHHHHHHHHHccC
Q 018394 87 GRQVIAV---SKSSDIVLMVLD----------------A-S---------------------KSEGHRQILTKELEAVGL 125 (356)
Q Consensus 87 ~~~~~~~---~~~~d~i~~v~d----------------~-~---------------------~~~~~~~~i~~~L~~~~i 125 (356)
.|.... ....+.+.+... . . ........+.+.|+.+++
T Consensus 76 -~Q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl 154 (556)
T PRK11819 76 -PQEPQLDPEKTVRENVEEGVAEVKAALDRFNEIYAAYAEPDADFDALAAEQGELQEIIDAADAWDLDSQLEIAMDALRC 154 (556)
T ss_pred -ecCCCCCCCCcHHHHHHHhhHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhcCccchHHHHHHHHHhCCC
Confidence 111111 111222221100 0 0 000112456778888888
Q ss_pred -ccccccCcccccceecccee---------eeecCCCCCCCHHHHHHHHHHhcc-cCcEEEEccCCCHHH
Q 018394 126 -RLNKRPPQIYFKKKKTGGIS---------FNSTLPLTHVDEKLCYQILHEYKI-HNAEVLFREDATVDD 184 (356)
Q Consensus 126 -~l~~~~~~lS~g~~qr~~ia---------l~~DEp~~~LD~~~~~~il~~l~~-~~~~i~~thd~~~~~ 184 (356)
..++++.+||+||+||+.|| +++||||++||+.....+.+.+.. ..++|++|||.....
T Consensus 155 ~~~~~~~~~LSgGqkqrv~la~al~~~p~vlLLDEPt~~LD~~~~~~l~~~L~~~~~tviiisHd~~~~~ 224 (556)
T PRK11819 155 PPWDAKVTKLSGGERRRVALCRLLLEKPDMLLLDEPTNHLDAESVAWLEQFLHDYPGTVVAVTHDRYFLD 224 (556)
T ss_pred CcccCchhhcCHHHHHHHHHHHHHhCCCCEEEEcCCCCcCChHHHHHHHHHHHhCCCeEEEEeCCHHHHH
Confidence 56888999999999999998 999999999999987666555542 359999999986543
No 311
>TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein.
Probab=99.78 E-value=6.5e-19 Score=185.48 Aligned_cols=170 Identities=15% Similarity=0.106 Sum_probs=121.6
Q ss_pred CCCCeEEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCccccccccccccceEEEECCEeecccCccccccccccCcccc
Q 018394 8 AGEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRG 87 (356)
Q Consensus 8 ~~~s~~v~~~~g~~v~LvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~~D~pGl~~~~~~~~~~~ 87 (356)
+++||++++ |+.++|+|+||||||||+++|+|...| .+|.|.++|.++.-++...++ ..++..
T Consensus 498 ~~isl~i~~--Ge~vaIvG~SGsGKSTLl~lL~gl~~p-----------~~G~I~idg~~i~~~~~~~lr----~~i~~v 560 (711)
T TIGR00958 498 KGLTFTLHP--GEVVALVGPSGSGKSTVAALLQNLYQP-----------TGGQVLLDGVPLVQYDHHYLH----RQVALV 560 (711)
T ss_pred cCceEEEcC--CCEEEEECCCCCCHHHHHHHHHhccCC-----------CCCEEEECCEEHHhcCHHHHH----hhceEE
Confidence 689999999 889999999999999999999999876 899999999998877654433 234555
Q ss_pred ccccccccc--hhHHHHHHhcCChHHHHHHHHHHHHHccC-------------ccccccCcccccceecccee-------
Q 018394 88 RQVIAVSKS--SDIVLMVLDASKSEGHRQILTKELEAVGL-------------RLNKRPPQIYFKKKKTGGIS------- 145 (356)
Q Consensus 88 ~~~~~~~~~--~d~i~~v~d~~~~~~~~~~i~~~L~~~~i-------------~l~~~~~~lS~g~~qr~~ia------- 145 (356)
.|....+.. .|++.+.... ...+.+.+.++..++ .+...-..||+||+||++||
T Consensus 561 ~Q~~~lF~gTIreNI~~g~~~----~~~e~i~~al~~a~l~~~i~~lp~GldT~ige~G~~LSGGQkQRlalARALl~~p 636 (711)
T TIGR00958 561 GQEPVLFSGSVRENIAYGLTD----TPDEEIMAAAKAANAHDFIMEFPNGYDTEVGEKGSQLSGGQKQRIAIARALVRKP 636 (711)
T ss_pred ecCccccccCHHHHHhcCCCC----CCHHHHHHHHHHcCCHHHHHhCCCccCCcccCCCCcCCHHHHHHHHHHHHHhcCC
Confidence 665555543 4555432211 112345555555554 22333457999999999998
Q ss_pred --eeecCCCCCCCHHHHHHHHHHhc-ccCcEEEEccCCCHHHHHHHHhccccccceEEEeecCCCC
Q 018394 146 --FNSTLPLTHVDEKLCYQILHEYK-IHNAEVLFREDATVDDLIDVIEGNRKYMKCVYVYNKIDVI 208 (356)
Q Consensus 146 --l~~DEp~~~LD~~~~~~il~~l~-~~~~~i~~thd~~~~~~~~~i~~~~~~~p~i~v~NK~Dl~ 208 (356)
+++||||++||.+.-..+.+... .+.|++++||+.+.... .+.|+++++.-+.
T Consensus 637 ~ILILDEpTSaLD~~te~~i~~~~~~~~~TvIiItHrl~~i~~----------aD~IivL~~G~iv 692 (711)
T TIGR00958 637 RVLILDEATSALDAECEQLLQESRSRASRTVLLIAHRLSTVER----------ADQILVLKKGSVV 692 (711)
T ss_pred CEEEEEccccccCHHHHHHHHHhhccCCCeEEEEeccHHHHHh----------CCEEEEEECCEEE
Confidence 99999999999988666665222 34699999999754322 3677888765444
No 312
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=99.78 E-value=1.4e-18 Score=180.56 Aligned_cols=148 Identities=18% Similarity=0.209 Sum_probs=104.2
Q ss_pred CCCCeEEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCccccccccccccceEEEECC-EeecccCccccccccccCccc
Q 018394 8 AGEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYND-TKIQLLDLPGIIEGASEGKGR 86 (356)
Q Consensus 8 ~~~s~~v~~~~g~~v~LvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g-~~i~~~D~pGl~~~~~~~~~~ 86 (356)
.+++|.|.+ |++++|+|||||||||||++|+|...| ..|.|.+++ ..+..++ ..
T Consensus 329 ~~isl~i~~--Ge~~~l~G~NGsGKSTLlk~l~G~~~p-----------~~G~i~~~~~~~igy~~------Q~------ 383 (638)
T PRK10636 329 DSIKLNLVP--GSRIGLLGRNGAGKSTLIKLLAGELAP-----------VSGEIGLAKGIKLGYFA------QH------ 383 (638)
T ss_pred ccceEEECC--CCEEEEECCCCCCHHHHHHHHhCCCCC-----------CCCeEEECCCEEEEEec------Cc------
Confidence 589999999 889999999999999999999999876 789998853 2222211 00
Q ss_pred cccccccccchhHHHHHHhcCChHHHHHHHHHHHHHccC---ccccccCcccccceecccee---------eeecCCCCC
Q 018394 87 GRQVIAVSKSSDIVLMVLDASKSEGHRQILTKELEAVGL---RLNKRPPQIYFKKKKTGGIS---------FNSTLPLTH 154 (356)
Q Consensus 87 ~~~~~~~~~~~d~i~~v~d~~~~~~~~~~i~~~L~~~~i---~l~~~~~~lS~g~~qr~~ia---------l~~DEp~~~ 154 (356)
+.........++..+... .+......+.+.|+.+++ ..++++..||+|++||+.+| +++||||++
T Consensus 384 --~~~~l~~~~~~~~~~~~~-~~~~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGekqRl~La~~l~~~p~lLlLDEPt~~ 460 (638)
T PRK10636 384 --QLEFLRADESPLQHLARL-APQELEQKLRDYLGGFGFQGDKVTEETRRFSGGEKARLVLALIVWQRPNLLLLDEPTNH 460 (638)
T ss_pred --chhhCCccchHHHHHHHh-CchhhHHHHHHHHHHcCCChhHhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCC
Confidence 000000111111112111 112233467888999998 46788999999999999998 999999999
Q ss_pred CCHHHHHHHHHHhcc-cCcEEEEccCCCHH
Q 018394 155 VDEKLCYQILHEYKI-HNAEVLFREDATVD 183 (356)
Q Consensus 155 LD~~~~~~il~~l~~-~~~~i~~thd~~~~ 183 (356)
||+.....+.+.+.. ..++|++|||....
T Consensus 461 LD~~~~~~l~~~L~~~~gtvi~vSHd~~~~ 490 (638)
T PRK10636 461 LDLDMRQALTEALIDFEGALVVVSHDRHLL 490 (638)
T ss_pred CCHHHHHHHHHHHHHcCCeEEEEeCCHHHH
Confidence 999986655554442 45999999997654
No 313
>TIGR01187 potA spermidine/putrescine ABC transporter ATP-binding subunit. This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included).
Probab=99.78 E-value=1.4e-18 Score=166.80 Aligned_cols=158 Identities=19% Similarity=0.173 Sum_probs=110.8
Q ss_pred EEcCCCCcHHHHHHHHHcCCCCccccccccccccceEEEECCEeecccCccccccccccCccccccccccccc---hhHH
Q 018394 24 LIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQVIAVSKS---SDIV 100 (356)
Q Consensus 24 LvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~~D~pGl~~~~~~~~~~~~~~~~~~~~---~d~i 100 (356)
|+|+|||||||||++|+|...+ ..|.|.++|.++.-.. . ....+++.+|....+.. .+++
T Consensus 1 l~G~nGsGKSTLl~~iaGl~~p-----------~~G~I~i~g~~i~~~~--~----~~~~i~~v~q~~~l~~~~tv~enl 63 (325)
T TIGR01187 1 LLGPSGCGKTTLLRLLAGFEQP-----------DSGSIMLDGEDVTNVP--P----HLRHINMVFQSYALFPHMTVEENV 63 (325)
T ss_pred CcCCCCCCHHHHHHHHHCCCCC-----------CceEEEECCEECCCCC--H----HHCCEEEEecCccccCCCcHHHHH
Confidence 6899999999999999999876 7999999998874321 1 12234555554443333 4555
Q ss_pred HHHHhcC--ChHHHHHHHHHHHHHccC--ccccccCcccccceecccee---------eeecCCCCCCCHHHHHHHH---
Q 018394 101 LMVLDAS--KSEGHRQILTKELEAVGL--RLNKRPPQIYFKKKKTGGIS---------FNSTLPLTHVDEKLCYQIL--- 164 (356)
Q Consensus 101 ~~v~d~~--~~~~~~~~i~~~L~~~~i--~l~~~~~~lS~g~~qr~~ia---------l~~DEp~~~LD~~~~~~il--- 164 (356)
.+..... ......+.+.+.++.+++ .+++.+.+||+||+||++|+ +++||||++||+.....+.
T Consensus 64 ~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qRvalaraL~~~p~lllLDEP~s~LD~~~~~~l~~~l 143 (325)
T TIGR01187 64 AFGLKMRKVPRAEIKPRVLEALRLVQLEEFADRKPHQLSGGQQQRVALARALVFKPKILLLDEPLSALDKKLRDQMQLEL 143 (325)
T ss_pred HHHHhhcCCCHHHHHHHHHHHHHHcCCcchhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCCccCCHHHHHHHHHHH
Confidence 4433221 122234567888999999 68899999999999999998 9999999999998855544
Q ss_pred HHhcc--cCcEEEEccCCCHHHHHHHHhccccccceEEEeecCCC
Q 018394 165 HEYKI--HNAEVLFREDATVDDLIDVIEGNRKYMKCVYVYNKIDV 207 (356)
Q Consensus 165 ~~l~~--~~~~i~~thd~~~~~~~~~i~~~~~~~p~i~v~NK~Dl 207 (356)
.++.. +.++|++|||...... .+..++++++.-+
T Consensus 144 ~~l~~~~g~tiiivTHd~~e~~~---------~~d~i~vl~~G~i 179 (325)
T TIGR01187 144 KTIQEQLGITFVFVTHDQEEAMT---------MSDRIAIMRKGKI 179 (325)
T ss_pred HHHHHhcCCEEEEEeCCHHHHHH---------hCCEEEEEECCEE
Confidence 44432 4589999999754321 1356667765544
No 314
>TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter. This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc.
Probab=99.78 E-value=9.5e-19 Score=184.36 Aligned_cols=169 Identities=14% Similarity=0.123 Sum_probs=120.6
Q ss_pred CCCCeEEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCccccccccccccceEEEECCEeecccCccccccccccCcccc
Q 018394 8 AGEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRG 87 (356)
Q Consensus 8 ~~~s~~v~~~~g~~v~LvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~~D~pGl~~~~~~~~~~~ 87 (356)
+++||++++ |+.+||+|+||||||||++.|+|...| .+|.|.++|.++.-+|...++ ..+++.
T Consensus 491 ~~isl~i~~--G~~vaIvG~SGsGKSTLlklL~gl~~p-----------~~G~I~idg~~i~~~~~~~lr----~~i~~v 553 (708)
T TIGR01193 491 SDISLTIKM--NSKTTIVGMSGSGKSTLAKLLVGFFQA-----------RSGEILLNGFSLKDIDRHTLR----QFINYL 553 (708)
T ss_pred eceeEEECC--CCEEEEECCCCCCHHHHHHHHhccCCC-----------CCcEEEECCEEHHHcCHHHHH----HheEEE
Confidence 689999999 889999999999999999999999877 899999999999877765543 235556
Q ss_pred ccccccccc--hhHHHHHHhcCChHHHHHHHHHHHHHccC-------------ccccccCcccccceecccee-------
Q 018394 88 RQVIAVSKS--SDIVLMVLDASKSEGHRQILTKELEAVGL-------------RLNKRPPQIYFKKKKTGGIS------- 145 (356)
Q Consensus 88 ~~~~~~~~~--~d~i~~v~d~~~~~~~~~~i~~~L~~~~i-------------~l~~~~~~lS~g~~qr~~ia------- 145 (356)
.|....+.. .|++.+..+ +....+.+.+.++..++ .+......||+||+||++||
T Consensus 554 ~Q~~~lf~gTI~eNi~l~~~---~~~~~~~i~~a~~~a~l~~~i~~lp~gldt~i~e~G~~LSgGQrQRialARall~~p 630 (708)
T TIGR01193 554 PQEPYIFSGSILENLLLGAK---ENVSQDEIWAACEIAEIKDDIENMPLGYQTELSEEGSSISGGQKQRIALARALLTDS 630 (708)
T ss_pred ecCceehhHHHHHHHhccCC---CCCCHHHHHHHHHHhCCHHHHHhcccccCcEecCCCCCCCHHHHHHHHHHHHHhhCC
Confidence 666555543 344433211 11112234444444433 23344567999999999998
Q ss_pred --eeecCCCCCCCHHHHHHHHHHhc--ccCcEEEEccCCCHHHHHHHHhccccccceEEEeecCC
Q 018394 146 --FNSTLPLTHVDEKLCYQILHEYK--IHNAEVLFREDATVDDLIDVIEGNRKYMKCVYVYNKID 206 (356)
Q Consensus 146 --l~~DEp~~~LD~~~~~~il~~l~--~~~~~i~~thd~~~~~~~~~i~~~~~~~p~i~v~NK~D 206 (356)
+++||||++||.++...+++.+. .+.|+|++||+.+.... .+.|+++++.-
T Consensus 631 ~iliLDE~Ts~LD~~te~~i~~~L~~~~~~T~IiitHr~~~~~~----------~D~i~~l~~G~ 685 (708)
T TIGR01193 631 KVLILDESTSNLDTITEKKIVNNLLNLQDKTIIFVAHRLSVAKQ----------SDKIIVLDHGK 685 (708)
T ss_pred CEEEEeCccccCCHHHHHHHHHHHHHhcCCEEEEEecchHHHHc----------CCEEEEEECCE
Confidence 99999999999988666555444 34699999999764332 36677776543
No 315
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=99.77 E-value=1.4e-18 Score=177.32 Aligned_cols=149 Identities=15% Similarity=0.090 Sum_probs=104.0
Q ss_pred CCCCeEEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCccccccccccccceEEEECCE-eeccc-CccccccccccCcc
Q 018394 8 AGEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDT-KIQLL-DLPGIIEGASEGKG 85 (356)
Q Consensus 8 ~~~s~~v~~~~g~~v~LvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~-~i~~~-D~pGl~~~~~~~~~ 85 (356)
.++||++.+ |++++|+|+|||||||||++|+|...+ ..|.+.++|. .+..+ ..+.+.
T Consensus 18 ~~vsl~i~~--Ge~~~liG~NGsGKSTLl~~l~Gl~~p-----------~~G~i~~~~~~~i~~~~q~~~~~-------- 76 (530)
T PRK15064 18 ENISVKFGG--GNRYGLIGANGCGKSTFMKILGGDLEP-----------SAGNVSLDPNERLGKLRQDQFAF-------- 76 (530)
T ss_pred eCCEEEECC--CCEEEEECCCCCCHHHHHHHHhCCCCC-----------CCceEEecCCCEEEEEeccCCcC--------
Confidence 689999999 889999999999999999999998866 7899988763 11111 000000
Q ss_pred ccccccccccchhHHHHHH----------------------------------hcCChHHHHHHHHHHHHHccC--cc-c
Q 018394 86 RGRQVIAVSKSSDIVLMVL----------------------------------DASKSEGHRQILTKELEAVGL--RL-N 128 (356)
Q Consensus 86 ~~~~~~~~~~~~d~i~~v~----------------------------------d~~~~~~~~~~i~~~L~~~~i--~l-~ 128 (356)
......+.+.+.. ..........++.+.|+.+++ .+ +
T Consensus 77 ------~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~ 150 (530)
T PRK15064 77 ------EEFTVLDTVIMGHTELWEVKQERDRIYALPEMSEEDGMKVADLEVKFAEMDGYTAEARAGELLLGVGIPEEQHY 150 (530)
T ss_pred ------CCCcHHHHHHHhhHHHHHHHHHHHHHhcccccccchHHHHHHHHHHHHhcCchhHHHHHHHHHHhCCCChhHhc
Confidence 0001111111100 000001123457788999998 23 4
Q ss_pred cccCcccccceecccee---------eeecCCCCCCCHHHHHHHHHHhcc-cCcEEEEccCCCHH
Q 018394 129 KRPPQIYFKKKKTGGIS---------FNSTLPLTHVDEKLCYQILHEYKI-HNAEVLFREDATVD 183 (356)
Q Consensus 129 ~~~~~lS~g~~qr~~ia---------l~~DEp~~~LD~~~~~~il~~l~~-~~~~i~~thd~~~~ 183 (356)
+++.+||+||+||+.+| +++||||++||+.....+++.+.. +.++|++|||....
T Consensus 151 ~~~~~LSgGq~qrv~lA~aL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~~~tiiivsHd~~~~ 215 (530)
T PRK15064 151 GLMSEVAPGWKLRVLLAQALFSNPDILLLDEPTNNLDINTIRWLEDVLNERNSTMIIISHDRHFL 215 (530)
T ss_pred CchhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCcccCHHHHHHHHHHHHhCCCeEEEEeCCHHHH
Confidence 67899999999999998 999999999999998877777664 45899999998653
No 316
>TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA. This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes.
Probab=99.77 E-value=4e-19 Score=182.81 Aligned_cols=157 Identities=12% Similarity=0.098 Sum_probs=112.9
Q ss_pred CCCCeEEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCccccccccccccceEEEECCEeecccCccccccccccCcccc
Q 018394 8 AGEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRG 87 (356)
Q Consensus 8 ~~~s~~v~~~~g~~v~LvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~~D~pGl~~~~~~~~~~~ 87 (356)
++++|++++ |+.++|+|++|||||||+++|+|...| ..|.|.++|.++..++...++ ..+++.
T Consensus 349 ~~inl~i~~--G~~v~IvG~sGsGKSTLl~lL~gl~~~-----------~~G~I~i~g~~i~~~~~~~~~----~~i~~v 411 (571)
T TIGR02203 349 DSISLVIEP--GETVALVGRSGSGKSTLVNLIPRFYEP-----------DSGQILLDGHDLADYTLASLR----RQVALV 411 (571)
T ss_pred cCeeEEecC--CCEEEEECCCCCCHHHHHHHHHhccCC-----------CCCeEEECCEeHHhcCHHHHH----hhceEE
Confidence 689999999 889999999999999999999999876 899999999998766544332 234555
Q ss_pred ccccccccc--hhHHHHHHhcCChHHHHHHHHHHHHHccC--cc-----------ccccCcccccceecccee-------
Q 018394 88 RQVIAVSKS--SDIVLMVLDASKSEGHRQILTKELEAVGL--RL-----------NKRPPQIYFKKKKTGGIS------- 145 (356)
Q Consensus 88 ~~~~~~~~~--~d~i~~v~d~~~~~~~~~~i~~~L~~~~i--~l-----------~~~~~~lS~g~~qr~~ia------- 145 (356)
.|....+.. .|++.+. ..+....+.+.+.++.+++ .+ ...-..||+||+||+++|
T Consensus 412 ~Q~~~lf~~Ti~~Ni~~~---~~~~~~~~~i~~~l~~~~l~~~i~~lp~gldt~i~~~g~~LSgGqrQRiaLARall~~~ 488 (571)
T TIGR02203 412 SQDVVLFNDTIANNIAYG---RTEQADRAEIERALAAAYAQDFVDKLPLGLDTPIGENGVLLSGGQRQRLAIARALLKDA 488 (571)
T ss_pred ccCcccccccHHHHHhcC---CCCCCCHHHHHHHHHHcChHHHHHhCcCcccceecCCCCcCCHHHHHHHHHHHHHhcCC
Confidence 665554443 2333221 1111223445666666665 22 222346999999999998
Q ss_pred --eeecCCCCCCCHHHHHHHHHHhc---ccCcEEEEccCCCHHH
Q 018394 146 --FNSTLPLTHVDEKLCYQILHEYK---IHNAEVLFREDATVDD 184 (356)
Q Consensus 146 --l~~DEp~~~LD~~~~~~il~~l~---~~~~~i~~thd~~~~~ 184 (356)
+++||||++||.++...+++.+. .+.++|++||+.+...
T Consensus 489 ~illLDEpts~LD~~~~~~i~~~L~~~~~~~tiIiitH~~~~~~ 532 (571)
T TIGR02203 489 PILILDEATSALDNESERLVQAALERLMQGRTTLVIAHRLSTIE 532 (571)
T ss_pred CEEEEeCccccCCHHHHHHHHHHHHHHhCCCEEEEEehhhHHHH
Confidence 99999999999998666655444 4579999999975543
No 317
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.77 E-value=1.7e-18 Score=151.35 Aligned_cols=129 Identities=17% Similarity=0.148 Sum_probs=90.3
Q ss_pred CCCCeEEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCccccccccccccceEEEECCEeecccCccccccccccCcccc
Q 018394 8 AGEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRG 87 (356)
Q Consensus 8 ~~~s~~v~~~~g~~v~LvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~~D~pGl~~~~~~~~~~~ 87 (356)
++++|++.+ |+.++|+|+|||||||||++|+|...+ ..|.+.++|.++.-. + .......++.
T Consensus 17 ~~~~~~i~~--Ge~~~i~G~nGsGKStLl~~l~G~~~~-----------~~G~i~~~g~~~~~~--~---~~~~~~i~~~ 78 (173)
T cd03230 17 DDISLTVEK--GEIYGLLGPNGAGKTTLIKIILGLLKP-----------DSGEIKVLGKDIKKE--P---EEVKRRIGYL 78 (173)
T ss_pred eeeEEEEcC--CcEEEEECCCCCCHHHHHHHHhCCCCC-----------CCeEEEECCEEcccc--h---HhhhccEEEE
Confidence 588999999 889999999999999999999999866 789999999876421 1 0111223333
Q ss_pred ccccccccchhHHHHHHhcCChHHHHHHHHHHHHHccCccccccCcccccceecccee---------eeecCCCCCCCHH
Q 018394 88 RQVIAVSKSSDIVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGIS---------FNSTLPLTHVDEK 158 (356)
Q Consensus 88 ~~~~~~~~~~d~i~~v~d~~~~~~~~~~i~~~L~~~~i~l~~~~~~lS~g~~qr~~ia---------l~~DEp~~~LD~~ 158 (356)
.|....+....+ .+.+ .||+||+||+.++ +++||||++||..
T Consensus 79 ~q~~~~~~~~tv-----------------~~~~------------~LS~G~~qrv~laral~~~p~illlDEPt~~LD~~ 129 (173)
T cd03230 79 PEEPSLYENLTV-----------------RENL------------KLSGGMKQRLALAQALLHDPELLILDEPTSGLDPE 129 (173)
T ss_pred ecCCccccCCcH-----------------HHHh------------hcCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHH
Confidence 332211111100 0111 0899999999988 9999999999998
Q ss_pred HHHHHH---HHhcc-cCcEEEEccCCCHH
Q 018394 159 LCYQIL---HEYKI-HNAEVLFREDATVD 183 (356)
Q Consensus 159 ~~~~il---~~l~~-~~~~i~~thd~~~~ 183 (356)
....++ +.+.. +.+++++||+....
T Consensus 130 ~~~~l~~~l~~~~~~g~tiii~th~~~~~ 158 (173)
T cd03230 130 SRREFWELLRELKKEGKTILLSSHILEEA 158 (173)
T ss_pred HHHHHHHHHHHHHHCCCEEEEECCCHHHH
Confidence 855544 44433 35899999997543
No 318
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=99.77 E-value=1.7e-18 Score=175.16 Aligned_cols=160 Identities=10% Similarity=0.095 Sum_probs=109.8
Q ss_pred CCCCeEEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCccccccccccccceEEEECCEeecccCccccccccccCcccc
Q 018394 8 AGEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRG 87 (356)
Q Consensus 8 ~~~s~~v~~~~g~~v~LvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~~D~pGl~~~~~~~~~~~ 87 (356)
.++||++.+ |++++|+|+||||||||+++|+|...| ..|.|.++|.++.-.. +. .....+.++.
T Consensus 265 ~~vsl~i~~--Ge~~~l~G~nGsGKSTLl~~l~Gl~~p-----------~~G~i~~~g~~i~~~~-~~--~~~~~~i~~~ 328 (491)
T PRK10982 265 RDVSFDLHK--GEILGIAGLVGAKRTDIVETLFGIREK-----------SAGTITLHGKKINNHN-AN--EAINHGFALV 328 (491)
T ss_pred ceeeEEEeC--CcEEEEecCCCCCHHHHHHHHcCCCcC-----------CccEEEECCEECCCCC-HH--HHHHCCCEEc
Confidence 578999999 889999999999999999999999876 7999999998764321 10 0011122322
Q ss_pred cccc---ccccch---hH-----HHHHHhcC---ChHHHHHHHHHHHHHccC---ccccccCcccccceecccee-----
Q 018394 88 RQVI---AVSKSS---DI-----VLMVLDAS---KSEGHRQILTKELEAVGL---RLNKRPPQIYFKKKKTGGIS----- 145 (356)
Q Consensus 88 ~~~~---~~~~~~---d~-----i~~v~d~~---~~~~~~~~i~~~L~~~~i---~l~~~~~~lS~g~~qr~~ia----- 145 (356)
.|.. ..+... +. +....... ......+.+.+.++.+++ ..++++.+||+||+||+.||
T Consensus 329 ~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrv~la~al~~ 408 (491)
T PRK10982 329 TEERRSTGIYAYLDIGFNSLISNIRNYKNKVGLLDNSRMKSDTQWVIDSMRVKTPGHRTQIGSLSGGNQQKVIIGRWLLT 408 (491)
T ss_pred CCchhhCCcccCCcHHHheehhhhhhhcccccccCcHHHHHHHHHHHHhcCccCCCcccccccCCcHHHHHHHHHHHHhc
Confidence 2221 111111 11 11111100 112234457788888888 36889999999999999998
Q ss_pred ----eeecCCCCCCCHHHHHHH---HHHhc-ccCcEEEEccCCCHH
Q 018394 146 ----FNSTLPLTHVDEKLCYQI---LHEYK-IHNAEVLFREDATVD 183 (356)
Q Consensus 146 ----l~~DEp~~~LD~~~~~~i---l~~l~-~~~~~i~~thd~~~~ 183 (356)
+++||||++||+.....+ ++.+. .+.++|++|||.+..
T Consensus 409 ~p~illLDEPt~gLD~~~~~~~~~~l~~l~~~~~tvi~vsHd~~~~ 454 (491)
T PRK10982 409 QPEILMLDEPTRGIDVGAKFEIYQLIAELAKKDKGIIIISSEMPEL 454 (491)
T ss_pred CCCEEEEcCCCcccChhHHHHHHHHHHHHHHCCCEEEEECCChHHH
Confidence 999999999999986555 44444 356999999997654
No 319
>cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=99.77 E-value=1.4e-18 Score=161.05 Aligned_cols=157 Identities=19% Similarity=0.189 Sum_probs=103.8
Q ss_pred CCCCeEEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCccccccccccccceEEE-----------ECCEeecccCcccc
Q 018394 8 AGEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIH-----------YNDTKIQLLDLPGI 76 (356)
Q Consensus 8 ~~~s~~v~~~~g~~v~LvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~-----------~~g~~i~~~D~pGl 76 (356)
.++++ +.+ |++++|+|+|||||||||++|+|...+ ..|.+. ++|.++..... ..
T Consensus 18 ~~i~~-i~~--Ge~~~IvG~nGsGKSTLlk~l~Gl~~p-----------~~G~I~~~~~~~~~~~~~~g~~~~~~~~-~~ 82 (255)
T cd03236 18 HRLPV-PRE--GQVLGLVGPNGIGKSTALKILAGKLKP-----------NLGKFDDPPDWDEILDEFRGSELQNYFT-KL 82 (255)
T ss_pred hcCCC-CCC--CCEEEEECCCCCCHHHHHHHHhCCcCC-----------CCceEeeccccchhhhhccCchhhhhhH-Hh
Confidence 56773 677 789999999999999999999999877 789886 45554422110 00
Q ss_pred ccccccCccccccccccccc--hhHHHHHHhcCChHHHHHHHHHHHHHccC--ccccccCcccccceecccee-------
Q 018394 77 IEGASEGKGRGRQVIAVSKS--SDIVLMVLDASKSEGHRQILTKELEAVGL--RLNKRPPQIYFKKKKTGGIS------- 145 (356)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~--~d~i~~v~d~~~~~~~~~~i~~~L~~~~i--~l~~~~~~lS~g~~qr~~ia------- 145 (356)
... ....++..+....... .+.+...+ ........+.+.++.+++ .+++.+..||+|++||++++
T Consensus 83 ~~~-~~~i~~~~~~~~~~~~~~~~~i~~~l---~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~laral~~~p 158 (255)
T cd03236 83 LEG-DVKVIVKPQYVDLIPKAVKGKVGELL---KKKDERGKLDELVDQLELRHVLDRNIDQLSGGELQRVAIAAALARDA 158 (255)
T ss_pred hhc-ccceeeecchhccCchHHHHHHHHHh---chhHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHhCC
Confidence 000 0011122222221111 11111111 112234567888999998 57888999999999999988
Q ss_pred --eeecCCCCCCCHHHHH---HHHHHhcc-cCcEEEEccCCCHH
Q 018394 146 --FNSTLPLTHVDEKLCY---QILHEYKI-HNAEVLFREDATVD 183 (356)
Q Consensus 146 --l~~DEp~~~LD~~~~~---~il~~l~~-~~~~i~~thd~~~~ 183 (356)
+++||||++||+.... ++++++.. +.+++++||+....
T Consensus 159 ~illlDEPts~LD~~~~~~l~~~l~~l~~~~~tIIiiSHd~~~~ 202 (255)
T cd03236 159 DFYFFDEPSSYLDIKQRLNAARLIRELAEDDNYVLVVEHDLAVL 202 (255)
T ss_pred CEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEECCHHHH
Confidence 9999999999998744 55555543 46899999997543
No 320
>PRK14264 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.77 E-value=2.2e-18 Score=163.97 Aligned_cols=165 Identities=15% Similarity=0.176 Sum_probs=109.5
Q ss_pred CCCCeEEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCccccccccccccceEEEECCEeecccCccccccccccCcccc
Q 018394 8 AGEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRG 87 (356)
Q Consensus 8 ~~~s~~v~~~~g~~v~LvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~~D~pGl~~~~~~~~~~~ 87 (356)
.+++|++.+ |++++|+|+|||||||||++|+|...+.- + .|..|.|.++|.++..... ... .....+++.
T Consensus 62 ~~is~~i~~--Ge~~~IvG~nGsGKSTLl~~L~Gl~~~~~---~---~p~~G~I~i~g~~i~~~~~-~~~-~~~~~i~~v 131 (305)
T PRK14264 62 KGVSMDIPE--KSVTALIGPSGCGKSTFLRCLNRMNDRIK---A---ARIDGSVELDGQDIYQDGV-NLV-ELRKRVGMV 131 (305)
T ss_pred eeeEEEEcC--CCEEEEECCCCCCHHHHHHHHhccccccC---C---CCCceEEEECCEEcccccc-cHH-HHhhceEEE
Confidence 578999999 88999999999999999999999864200 0 0268999999987642111 000 011223333
Q ss_pred ccccccc--cchhHHHHHHhcC--------------C-hHHHHHHHHHHHHHccC------ccccccCcccccceeccce
Q 018394 88 RQVIAVS--KSSDIVLMVLDAS--------------K-SEGHRQILTKELEAVGL------RLNKRPPQIYFKKKKTGGI 144 (356)
Q Consensus 88 ~~~~~~~--~~~d~i~~v~d~~--------------~-~~~~~~~i~~~L~~~~i------~l~~~~~~lS~g~~qr~~i 144 (356)
.|....+ ...+.+.+..... . .....+.+.+.++.+++ .+++++..||+||+||++|
T Consensus 132 ~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrv~L 211 (305)
T PRK14264 132 FQSPNPFPKSIRENISYGPRKHGDINTGLLARLLGRDDKDAEDELVERSLRQAALWDEVNDRLDDNALGLSGGQQQRLCI 211 (305)
T ss_pred ccCCccccccHHHHHHhHHhhcccccccccccccccCchHHHHHHHHHHHHHcCCchhhhHHhcCccccCCHHHHHHHHH
Confidence 4432222 2233343322110 0 11123456777887776 3477889999999999999
Q ss_pred e---------eeecCCCCCCCHHHHHH---HHHHhcccCcEEEEccCCCH
Q 018394 145 S---------FNSTLPLTHVDEKLCYQ---ILHEYKIHNAEVLFREDATV 182 (356)
Q Consensus 145 a---------l~~DEp~~~LD~~~~~~---il~~l~~~~~~i~~thd~~~ 182 (356)
+ +++||||++||+..... +|+.+....++|++||+...
T Consensus 212 AraL~~~p~lLLLDEPtsgLD~~~~~~l~~~L~~~~~~~tiiivtH~~~~ 261 (305)
T PRK14264 212 ARCLAVDPEVILMDEPASALDPIATSKIEDLIEELAEEYTVVVVTHNMQQ 261 (305)
T ss_pred HHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCEEEEEEcCHHH
Confidence 8 99999999999987544 45555445689999999765
No 321
>PRK05291 trmE tRNA modification GTPase TrmE; Reviewed
Probab=99.77 E-value=2.5e-19 Score=178.71 Aligned_cols=187 Identities=27% Similarity=0.265 Sum_probs=128.4
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHcCCC-CccccccccccccceEEEECCEeecccCccccccccccCccc-cccccccccc
Q 018394 19 HGRVALIGFPSVGKSTLLTLLTGTHS-EAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGR-GRQVIAVSKS 96 (356)
Q Consensus 19 g~~v~LvG~~gaGKSTLln~L~g~~~-~vs~~p~TT~~~~~G~i~~~g~~i~~~D~pGl~~~~~~~~~~-~~~~~~~~~~ 96 (356)
+..|+|+|+||||||||+|+|++... .++++||||+|.....+.++|.++.++||||+.......... .......+..
T Consensus 215 ~~kV~ivG~~nvGKSSLln~L~~~~~a~v~~~~gtT~d~~~~~i~~~g~~i~l~DT~G~~~~~~~ie~~gi~~~~~~~~~ 294 (449)
T PRK05291 215 GLKVVIAGRPNVGKSSLLNALLGEERAIVTDIAGTTRDVIEEHINLDGIPLRLIDTAGIRETDDEVEKIGIERSREAIEE 294 (449)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCcccccEEEEEEECCeEEEEEeCCCCCCCccHHHHHHHHHHHHHHHh
Confidence 57899999999999999999999874 689999999999999999999999999999985321100000 0112234566
Q ss_pred hhHHHHHHhcCChHHHHHHHHHHHHHccCccccccCcccccceeccceeeeecCCCCCCCHHHHHHHHHHhcccCcEEEE
Q 018394 97 SDIVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNAEVLF 176 (356)
Q Consensus 97 ~d~i~~v~d~~~~~~~~~~i~~~L~~~~i~l~~~~~~lS~g~~qr~~ial~~DEp~~~LD~~~~~~il~~l~~~~~~i~~ 176 (356)
+|++++|+|++.+....+ . +++
T Consensus 295 aD~il~VvD~s~~~s~~~-~---------------------------------------------~~l------------ 316 (449)
T PRK05291 295 ADLVLLVLDASEPLTEED-D---------------------------------------------EIL------------ 316 (449)
T ss_pred CCEEEEEecCCCCCChhH-H---------------------------------------------HHH------------
Confidence 777777777654321110 0 000
Q ss_pred ccCCCHHHHHHHHhccccccceEEEeecCCCCChhhHHHHhcCCCEEEeccccccchHHHHHHHHHHhCceEEEeCCCCC
Q 018394 177 REDATVDDLIDVIEGNRKYMKCVYVYNKIDVIGIDDVDKLARQPNSVVISCNLKLNLDRLLARMWEEMGLVRVYTKPQGQ 256 (356)
Q Consensus 177 thd~~~~~~~~~i~~~~~~~p~i~v~NK~Dl~~~~~~~~l~~~~~~i~iSa~~~~~l~~L~~~i~~~l~~i~~~~~~~~~ 256 (356)
.. ...+|+++|+||+|+....... .....+++++||++|.|+++|.+.+.+.+... +.
T Consensus 317 ----------~~----~~~~piiiV~NK~DL~~~~~~~-~~~~~~~i~iSAktg~GI~~L~~~L~~~l~~~--~~----- 374 (449)
T PRK05291 317 ----------EE----LKDKPVIVVLNKADLTGEIDLE-EENGKPVIRISAKTGEGIDELREAIKELAFGG--FG----- 374 (449)
T ss_pred ----------Hh----cCCCCcEEEEEhhhccccchhh-hccCCceEEEEeeCCCCHHHHHHHHHHHHhhc--cc-----
Confidence 00 1135999999999997543332 11234589999999999999999998877431 10
Q ss_pred CCCCCccEEeecCCCCCCHHHHHHHHHHhHh
Q 018394 257 QPDFTEPVVLSVDRGGCTVEDFCNHIHRSLV 287 (356)
Q Consensus 257 ~p~~~~~~~~~~~r~g~~v~~~a~~ih~~l~ 287 (356)
.... ..++.+.||...+..+.+++...+.
T Consensus 375 -~~~~-~~~~~~~R~~~~l~~a~~~l~~~~~ 403 (449)
T PRK05291 375 -GNQE-GVFLTNARHLEALERALEHLERALE 403 (449)
T ss_pred -cccc-cceehHHHHHHHHHHHHHHHHHHHH
Confidence 0122 2345566899999999888876543
No 322
>COG4148 ModC ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.77 E-value=6e-19 Score=160.26 Aligned_cols=155 Identities=19% Similarity=0.196 Sum_probs=111.4
Q ss_pred CCCeEEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCccccccccccccceEEEECCEeecccCc-cccc-cccccCccc
Q 018394 9 GEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDL-PGII-EGASEGKGR 86 (356)
Q Consensus 9 ~~s~~v~~~~g~~v~LvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~~D~-pGl~-~~~~~~~~~ 86 (356)
+++|.++. ..++||.|++|||||||+|+++|+..| ..|.|.++|.-+. |+ .|+. +.....+|+
T Consensus 16 ~a~~~~p~--~GvTAlFG~SGsGKTslin~IaGL~rP-----------deG~I~lngr~L~--Ds~k~i~lp~~~RriGY 80 (352)
T COG4148 16 DANFTLPA--RGITALFGPSGSGKTSLINMIAGLTRP-----------DEGRIELNGRVLV--DAEKGIFLPPEKRRIGY 80 (352)
T ss_pred EEeccCCC--CceEEEecCCCCChhhHHHHHhccCCc-----------cccEEEECCEEee--cccCCcccChhhheeee
Confidence 34555555 349999999999999999999999877 8999999997653 43 2332 223345566
Q ss_pred cccccccccchh---HHHHHHhcCChHHHHHHHHHHHHHccC--ccccccCcccccceecccee---------eeecCCC
Q 018394 87 GRQVIAVSKSSD---IVLMVLDASKSEGHRQILTKELEAVGL--RLNKRPPQIYFKKKKTGGIS---------FNSTLPL 152 (356)
Q Consensus 87 ~~~~~~~~~~~d---~i~~v~d~~~~~~~~~~i~~~L~~~~i--~l~~~~~~lS~g~~qr~~ia---------l~~DEp~ 152 (356)
++|....|+... ++-+..... ...........+|| .++++|..||||++||++|+ +++|||+
T Consensus 81 VFQDARLFpH~tVrgNL~YG~~~~----~~~~fd~iv~lLGI~hLL~R~P~~LSGGEkQRVAIGRALLt~P~LLLmDEPL 156 (352)
T COG4148 81 VFQDARLFPHYTVRGNLRYGMWKS----MRAQFDQLVALLGIEHLLDRYPGTLSGGEKQRVAIGRALLTAPELLLMDEPL 156 (352)
T ss_pred EeeccccccceEEecchhhhhccc----chHhHHHHHHHhCcHHHHhhCCCccCcchhhHHHHHHHHhcCCCeeeecCch
Confidence 666665555432 233333222 23345667788899 89999999999999999997 8999999
Q ss_pred CCCCHHHHHHHHH---Hhcc--cCcEEEEccCCCH
Q 018394 153 THVDEKLCYQILH---EYKI--HNAEVLFREDATV 182 (356)
Q Consensus 153 ~~LD~~~~~~il~---~l~~--~~~~i~~thd~~~ 182 (356)
++||...-.++|- .+.. +-.++++||.+.+
T Consensus 157 aSLD~~RK~EilpylERL~~e~~IPIlYVSHS~~E 191 (352)
T COG4148 157 ASLDLPRKREILPYLERLRDEINIPILYVSHSLDE 191 (352)
T ss_pred hhcccchhhHHHHHHHHHHHhcCCCEEEEecCHHH
Confidence 9999876555544 4432 3378999998643
No 323
>PRK13409 putative ATPase RIL; Provisional
Probab=99.77 E-value=1.1e-18 Score=179.36 Aligned_cols=147 Identities=16% Similarity=0.161 Sum_probs=102.9
Q ss_pred CCCCeEEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCccccccccccccceEEEECCEeecccCccccccccccCcccc
Q 018394 8 AGEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRG 87 (356)
Q Consensus 8 ~~~s~~v~~~~g~~v~LvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~~D~pGl~~~~~~~~~~~ 87 (356)
.+++|++.+ |++++|+|+||||||||+++|+|...| ..|.+.++ ..+ ++... ...
T Consensus 356 ~~~s~~i~~--Geiv~l~G~NGsGKSTLlk~L~Gl~~p-----------~~G~I~~~-~~i------~y~~Q---~~~-- 410 (590)
T PRK13409 356 EVEGGEIYE--GEVIGIVGPNGIGKTTFAKLLAGVLKP-----------DEGEVDPE-LKI------SYKPQ---YIK-- 410 (590)
T ss_pred EecceEECC--CCEEEEECCCCCCHHHHHHHHhCCCCC-----------CceEEEEe-eeE------EEecc---ccc--
Confidence 456788888 889999999999999999999999876 78988875 211 11110 000
Q ss_pred ccccccccchhHHHHHHhcCChHHHHHHHHHHHHHccC--ccccccCcccccceecccee---------eeecCCCCCCC
Q 018394 88 RQVIAVSKSSDIVLMVLDASKSEGHRQILTKELEAVGL--RLNKRPPQIYFKKKKTGGIS---------FNSTLPLTHVD 156 (356)
Q Consensus 88 ~~~~~~~~~~d~i~~v~d~~~~~~~~~~i~~~L~~~~i--~l~~~~~~lS~g~~qr~~ia---------l~~DEp~~~LD 156 (356)
........+++.+...... ....+.++|+.+++ .+++++.+||+||+||++|| +++||||++||
T Consensus 411 --~~~~~tv~e~l~~~~~~~~---~~~~~~~~L~~l~l~~~~~~~~~~LSGGe~QRvaiAraL~~~p~llLLDEPt~~LD 485 (590)
T PRK13409 411 --PDYDGTVEDLLRSITDDLG---SSYYKSEIIKPLQLERLLDKNVKDLSGGELQRVAIAACLSRDADLYLLDEPSAHLD 485 (590)
T ss_pred --CCCCCcHHHHHHHHhhhcC---hHHHHHHHHHHCCCHHHHhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCC
Confidence 0011122333333222111 12346788999999 68899999999999999998 99999999999
Q ss_pred HHHHHHH---HHHhcc--cCcEEEEccCCCHHH
Q 018394 157 EKLCYQI---LHEYKI--HNAEVLFREDATVDD 184 (356)
Q Consensus 157 ~~~~~~i---l~~l~~--~~~~i~~thd~~~~~ 184 (356)
......+ |+.+.. +.+++++|||..+..
T Consensus 486 ~~~~~~l~~~l~~l~~~~g~tviivsHD~~~~~ 518 (590)
T PRK13409 486 VEQRLAVAKAIRRIAEEREATALVVDHDIYMID 518 (590)
T ss_pred HHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHH
Confidence 9985554 445433 459999999976543
No 324
>TIGR02857 CydD thiol reductant ABC exporter, CydD subunit. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD
Probab=99.77 E-value=5.5e-19 Score=180.22 Aligned_cols=155 Identities=19% Similarity=0.190 Sum_probs=112.2
Q ss_pred CCCCeEEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCccccccccccccceEEEECCEeecccCccccccccccCcccc
Q 018394 8 AGEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRG 87 (356)
Q Consensus 8 ~~~s~~v~~~~g~~v~LvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~~D~pGl~~~~~~~~~~~ 87 (356)
+++||++++ |+.++|+|++|||||||+++|+|...| ..|.|.++|.++.-++...++ ..++..
T Consensus 339 ~~i~l~i~~--G~~~~ivG~sGsGKSTL~~ll~g~~~~-----------~~G~I~~~g~~i~~~~~~~lr----~~i~~v 401 (529)
T TIGR02857 339 RPVSFTVPP--GERVALVGPSGAGKSTLLNLLLGFVDP-----------TEGSIAVNGVPLADADADSWR----DQIAWV 401 (529)
T ss_pred cceeEEECC--CCEEEEECCCCCCHHHHHHHHhcCCCC-----------CCcEEEECCEehhhCCHHHHH----hheEEE
Confidence 689999999 889999999999999999999999876 899999999998776654333 234555
Q ss_pred ccccccccc--hhHHHHHHhcCChHHHHHHHHHHHHHccC-------------ccccccCcccccceecccee-------
Q 018394 88 RQVIAVSKS--SDIVLMVLDASKSEGHRQILTKELEAVGL-------------RLNKRPPQIYFKKKKTGGIS------- 145 (356)
Q Consensus 88 ~~~~~~~~~--~d~i~~v~d~~~~~~~~~~i~~~L~~~~i-------------~l~~~~~~lS~g~~qr~~ia------- 145 (356)
.|....+.. .|++.+.. +....+.+.+.++..++ .+......||+||+||+++|
T Consensus 402 ~Q~~~lf~~ti~~Ni~~~~----~~~~~~~i~~a~~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGq~qri~laRal~~~~ 477 (529)
T TIGR02857 402 PQHPFLFAGTIAENIRLAR----PDASDAEIRRALERAGLDEFVAALPQGLDTLIGEGGAGLSGGQAQRLALARAFLRDA 477 (529)
T ss_pred cCCCcccCcCHHHHHhccC----CCCCHHHHHHHHHHcCcHHHHHhCcccccchhccccccCCHHHHHHHHHHHHHhcCC
Confidence 565554443 33333211 11112344555555544 22334568999999999998
Q ss_pred --eeecCCCCCCCHHHHHHHHHHhc---ccCcEEEEccCCCHH
Q 018394 146 --FNSTLPLTHVDEKLCYQILHEYK---IHNAEVLFREDATVD 183 (356)
Q Consensus 146 --l~~DEp~~~LD~~~~~~il~~l~---~~~~~i~~thd~~~~ 183 (356)
+++||||++||+++...+++.+. .+.|++++||+.+..
T Consensus 478 ~ililDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~ 520 (529)
T TIGR02857 478 PLLLLDEPTAHLDAETEALVTEALRALAQGRTVLLVTHRLALA 520 (529)
T ss_pred CEEEEeCcccccCHHHHHHHHHHHHHhcCCCEEEEEecCHHHH
Confidence 99999999999998666655444 456999999997543
No 325
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=99.77 E-value=1.2e-18 Score=181.25 Aligned_cols=160 Identities=17% Similarity=0.158 Sum_probs=106.2
Q ss_pred CCCCeEEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCccccccccccccceEEEECCEe-ecccC--ccccccccccCc
Q 018394 8 AGEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTK-IQLLD--LPGIIEGASEGK 84 (356)
Q Consensus 8 ~~~s~~v~~~~g~~v~LvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~-i~~~D--~pGl~~~~~~~~ 84 (356)
.++||+|.+ |+++||+|+|||||||||++|+|...| ..|.|.++|.. +..+. .+.. .....
T Consensus 18 ~~vs~~i~~--Ge~v~LvG~NGsGKSTLLkiL~G~~~p-----------d~G~I~~~~~~~i~~~~q~~~~~---~~~~~ 81 (638)
T PRK10636 18 DNATATINP--GQKVGLVGKNGCGKSTLLALLKNEISA-----------DGGSYTFPGNWQLAWVNQETPAL---PQPAL 81 (638)
T ss_pred cCcEEEECC--CCEEEEECCCCCCHHHHHHHHhCCCCC-----------CCceEEecCCCEEEEEecCCCCC---CCCHH
Confidence 689999999 889999999999999999999998766 78999987742 21111 1100 00001
Q ss_pred cccccccccccchh-------------HHHHH---HhcCChHHHHHHHHHHHHHccC---ccccccCcccccceecccee
Q 018394 85 GRGRQVIAVSKSSD-------------IVLMV---LDASKSEGHRQILTKELEAVGL---RLNKRPPQIYFKKKKTGGIS 145 (356)
Q Consensus 85 ~~~~~~~~~~~~~d-------------~i~~v---~d~~~~~~~~~~i~~~L~~~~i---~l~~~~~~lS~g~~qr~~ia 145 (356)
+...+....+.... .+... .+..........+...|+.+|+ .+++++..||+|++||+.+|
T Consensus 82 ~~v~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSgGerqRv~LA 161 (638)
T PRK10636 82 EYVIDGDREYRQLEAQLHDANERNDGHAIATIHGKLDAIDAWTIRSRAASLLHGLGFSNEQLERPVSDFSGGWRMRLNLA 161 (638)
T ss_pred HHHHHhhHHHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhCCCCchhhcCchhhcCHHHHHHHHHH
Confidence 11111100000000 00000 0111111223467888999998 36888999999999999998
Q ss_pred ---------eeecCCCCCCCHHHHHHHHHHhcc-cCcEEEEccCCCHH
Q 018394 146 ---------FNSTLPLTHVDEKLCYQILHEYKI-HNAEVLFREDATVD 183 (356)
Q Consensus 146 ---------l~~DEp~~~LD~~~~~~il~~l~~-~~~~i~~thd~~~~ 183 (356)
+++||||++||+..+..+.+.+.. ..++|++|||....
T Consensus 162 ~aL~~~P~lLLLDEPtn~LD~~~~~~L~~~L~~~~~tviivsHd~~~l 209 (638)
T PRK10636 162 QALICRSDLLLLDEPTNHLDLDAVIWLEKWLKSYQGTLILISHDRDFL 209 (638)
T ss_pred HHHccCCCEEEEcCCCCcCCHHHHHHHHHHHHhCCCeEEEEeCCHHHH
Confidence 999999999999987766665543 46999999997654
No 326
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.77 E-value=1.4e-18 Score=152.60 Aligned_cols=133 Identities=18% Similarity=0.156 Sum_probs=90.4
Q ss_pred CCCCeEEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCccccccccccccceEEEECCEeecccCc-cccccccccCccc
Q 018394 8 AGEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDL-PGIIEGASEGKGR 86 (356)
Q Consensus 8 ~~~s~~v~~~~g~~v~LvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~~D~-pGl~~~~~~~~~~ 86 (356)
.+++|++.+ |++++|+|+||||||||+++|+|...+ ..|.+.++|.++...+. +. ......++
T Consensus 17 ~~i~~~i~~--G~~~~i~G~nGsGKSTLl~~l~G~~~~-----------~~G~i~~~g~~~~~~~~~~~---~~~~~i~~ 80 (178)
T cd03229 17 NDVSLNIEA--GEIVALLGPSGSGKSTLLRCIAGLEEP-----------DSGSILIDGEDLTDLEDELP---PLRRRIGM 80 (178)
T ss_pred eeeeEEEcC--CCEEEEECCCCCCHHHHHHHHhCCCCC-----------CceEEEECCEEccccchhHH---HHhhcEEE
Confidence 578999999 889999999999999999999999866 79999999987653320 10 01112222
Q ss_pred cccccccccchhHHHHHHhcCChHHHHHHHHHHHHHccCccccccCcccccceecccee---------eeecCCCCCCCH
Q 018394 87 GRQVIAVSKSSDIVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGIS---------FNSTLPLTHVDE 157 (356)
Q Consensus 87 ~~~~~~~~~~~d~i~~v~d~~~~~~~~~~i~~~L~~~~i~l~~~~~~lS~g~~qr~~ia---------l~~DEp~~~LD~ 157 (356)
..+....+.... +.+.+ .. .||+||+||+.++ +++||||++||+
T Consensus 81 ~~q~~~~~~~~t-----------------~~~~l---~~-------~lS~G~~qr~~la~al~~~p~llilDEP~~~LD~ 133 (178)
T cd03229 81 VFQDFALFPHLT-----------------VLENI---AL-------GLSGGQQQRVALARALAMDPDVLLLDEPTSALDP 133 (178)
T ss_pred EecCCccCCCCC-----------------HHHhe---ee-------cCCHHHHHHHHHHHHHHCCCCEEEEeCCcccCCH
Confidence 222211111100 00000 00 1899999999888 999999999999
Q ss_pred HHHHHH---HHHhcc--cCcEEEEccCCCHH
Q 018394 158 KLCYQI---LHEYKI--HNAEVLFREDATVD 183 (356)
Q Consensus 158 ~~~~~i---l~~l~~--~~~~i~~thd~~~~ 183 (356)
.....+ ++++.. +.+++++||+....
T Consensus 134 ~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~ 164 (178)
T cd03229 134 ITRREVRALLKSLQAQLGITVVLVTHDLDEA 164 (178)
T ss_pred HHHHHHHHHHHHHHHhcCCEEEEEeCCHHHH
Confidence 885544 445443 36899999997543
No 327
>KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.77 E-value=1.1e-18 Score=185.25 Aligned_cols=179 Identities=16% Similarity=0.154 Sum_probs=130.7
Q ss_pred CCCCeEEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCccccccccccccceEEEECCEeecccCccccccccccCcccc
Q 018394 8 AGEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRG 87 (356)
Q Consensus 8 ~~~s~~v~~~~g~~v~LvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~~D~pGl~~~~~~~~~~~ 87 (356)
+|+||.|+. |+.|||||++||||||+++.|.+...| ..|+|.++|.++.-++.+-++. .++.+
T Consensus 370 ~g~sl~i~~--G~~valVG~SGsGKST~i~LL~RfydP-----------~~G~V~idG~di~~~~~~~lr~----~iglV 432 (1228)
T KOG0055|consen 370 KGVSLKIPS--GQTVALVGPSGSGKSTLIQLLARFYDP-----------TSGEVLIDGEDIRNLNLKWLRS----QIGLV 432 (1228)
T ss_pred CCeEEEeCC--CCEEEEECCCCCCHHHHHHHHHHhcCC-----------CCceEEEcCccchhcchHHHHh----hcCee
Confidence 689999999 889999999999999999999999866 8999999999999888776653 46677
Q ss_pred ccccccccc--hhHHHHHHhcCChHHHHHHHHHHH-------------HHccCccccccCcccccceecccee-------
Q 018394 88 RQVIAVSKS--SDIVLMVLDASKSEGHRQILTKEL-------------EAVGLRLNKRPPQIYFKKKKTGGIS------- 145 (356)
Q Consensus 88 ~~~~~~~~~--~d~i~~v~d~~~~~~~~~~i~~~L-------------~~~~i~l~~~~~~lS~g~~qr~~ia------- 145 (356)
.|.+..+.. .++|.+-- +....+.+.+.+ +.++-.....-.+|||||+||++||
T Consensus 433 ~QePvlF~~tI~eNI~~G~----~dat~~~i~~a~k~ana~~fi~~lp~g~~T~vge~g~qLSGGQKQRIAIARalv~~P 508 (1228)
T KOG0055|consen 433 SQEPVLFATTIRENIRYGK----PDATREEIEEAAKAANAHDFILKLPDGYDTLVGERGVQLSGGQKQRIAIARALVRNP 508 (1228)
T ss_pred eechhhhcccHHHHHhcCC----CcccHHHHHHHHHHccHHHHHHhhHHhhcccccCCCCCCChHHHHHHHHHHHHHhCC
Confidence 776644432 44444322 111112222222 2222244455567999999999999
Q ss_pred --eeecCCCCCCCHHH---HHHHHHHhcccCcEEEEccCCCHHHHHHHHhccccccceEEEeecCCCCChhhHHHHh
Q 018394 146 --FNSTLPLTHVDEKL---CYQILHEYKIHNAEVLFREDATVDDLIDVIEGNRKYMKCVYVYNKIDVIGIDDVDKLA 217 (356)
Q Consensus 146 --l~~DEp~~~LD~~~---~~~il~~l~~~~~~i~~thd~~~~~~~~~i~~~~~~~p~i~v~NK~Dl~~~~~~~~l~ 217 (356)
|++||||++||++. +++.|+....+.|.++++|+.+-.. +.+.|+|+.+.-++....-++|.
T Consensus 509 ~ILLLDEaTSaLD~~se~~Vq~ALd~~~~grTTivVaHRLStIr----------naD~I~v~~~G~IvE~G~h~ELi 575 (1228)
T KOG0055|consen 509 KILLLDEATSALDAESERVVQEALDKASKGRTTIVVAHRLSTIR----------NADKIAVMEEGKIVEQGTHDELI 575 (1228)
T ss_pred CEEEecCcccccCHHHHHHHHHHHHHhhcCCeEEEEeeehhhhh----------ccCEEEEEECCEEEEecCHHHHH
Confidence 99999999999886 6778888888889999999976433 24778888877666444444443
No 328
>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional
Probab=99.77 E-value=1.3e-18 Score=179.58 Aligned_cols=169 Identities=15% Similarity=0.135 Sum_probs=119.1
Q ss_pred CCCCeEEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCccccccccccccceEEEECCEeecccCccccccccccCcccc
Q 018394 8 AGEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRG 87 (356)
Q Consensus 8 ~~~s~~v~~~~g~~v~LvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~~D~pGl~~~~~~~~~~~ 87 (356)
++++|++.+ |+.++|+|+||||||||++.|+|...| ..|.+.++|.++.-++...++ ..+++.
T Consensus 352 ~~inl~i~~--G~~v~IvG~sGsGKSTLl~lL~gl~~p-----------~~G~I~i~g~~i~~~~~~~~r----~~i~~v 414 (588)
T PRK13657 352 EDVSFEAKP--GQTVAIVGPTGAGKSTLINLLQRVFDP-----------QSGRILIDGTDIRTVTRASLR----RNIAVV 414 (588)
T ss_pred cceeEEECC--CCEEEEECCCCCCHHHHHHHHhcCcCC-----------CCCEEEECCEEhhhCCHHHHH----hheEEE
Confidence 688999999 889999999999999999999999877 899999999998876654433 234555
Q ss_pred ccccccccc--hhHHHHHHhcCChHHHHHHHHHHHHHccC-------------ccccccCcccccceecccee-------
Q 018394 88 RQVIAVSKS--SDIVLMVLDASKSEGHRQILTKELEAVGL-------------RLNKRPPQIYFKKKKTGGIS------- 145 (356)
Q Consensus 88 ~~~~~~~~~--~d~i~~v~d~~~~~~~~~~i~~~L~~~~i-------------~l~~~~~~lS~g~~qr~~ia------- 145 (356)
.|....+.. .|++.+. . +....+.+.+.++.+++ .+......||+||+||++||
T Consensus 415 ~Q~~~lf~~Ti~~Ni~~~---~-~~~~d~~i~~al~~~~l~~~i~~lp~gldt~i~~~g~~LSgGq~QRialARall~~~ 490 (588)
T PRK13657 415 FQDAGLFNRSIEDNIRVG---R-PDATDEEMRAAAERAQAHDFIERKPDGYDTVVGERGRQLSGGERQRLAIARALLKDP 490 (588)
T ss_pred ecCcccccccHHHHHhcC---C-CCCCHHHHHHHHHHhCHHHHHHhCcccccchhcCCCCCCCHHHHHHHHHHHHHhcCC
Confidence 565555543 3444332 1 11112223444444333 23334457999999999998
Q ss_pred --eeecCCCCCCCHHHHHHHHHHhc---ccCcEEEEccCCCHHHHHHHHhccccccceEEEeecCCC
Q 018394 146 --FNSTLPLTHVDEKLCYQILHEYK---IHNAEVLFREDATVDDLIDVIEGNRKYMKCVYVYNKIDV 207 (356)
Q Consensus 146 --l~~DEp~~~LD~~~~~~il~~l~---~~~~~i~~thd~~~~~~~~~i~~~~~~~p~i~v~NK~Dl 207 (356)
+++||||++||+++...+++.+. .+.+++++||+.+.... .+.+++++..-+
T Consensus 491 ~iliLDEpts~LD~~t~~~i~~~l~~~~~~~tvIiitHr~~~~~~----------~D~ii~l~~G~i 547 (588)
T PRK13657 491 PILILDEATSALDVETEAKVKAALDELMKGRTTFIIAHRLSTVRN----------ADRILVFDNGRV 547 (588)
T ss_pred CEEEEeCCccCCCHHHHHHHHHHHHHHhcCCEEEEEEecHHHHHh----------CCEEEEEECCEE
Confidence 99999999999998766665444 45699999999754332 366777765433
No 329
>TIGR01192 chvA glucan exporter ATP-binding protein. This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related.
Probab=99.77 E-value=2.5e-18 Score=177.35 Aligned_cols=170 Identities=13% Similarity=0.134 Sum_probs=116.5
Q ss_pred CCCCeEEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCccccccccccccceEEEECCEeecccCccccccccccCcccc
Q 018394 8 AGEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRG 87 (356)
Q Consensus 8 ~~~s~~v~~~~g~~v~LvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~~D~pGl~~~~~~~~~~~ 87 (356)
++++|++++ |+.++|+|+||||||||+++|+|...| .+|.+.++|.++.-++...++ ...++.
T Consensus 352 ~~i~~~i~~--G~~~~ivG~sGsGKSTL~~ll~g~~~~-----------~~G~i~~~g~~~~~~~~~~~~----~~i~~v 414 (585)
T TIGR01192 352 FDVSFEAKA--GQTVAIVGPTGAGKTTLINLLQRVYDP-----------TVGQILIDGIDINTVTRESLR----KSIATV 414 (585)
T ss_pred cceeEEEcC--CCEEEEECCCCCCHHHHHHHHccCCCC-----------CCCEEEECCEEhhhCCHHHHH----hheEEE
Confidence 688999999 889999999999999999999999876 899999999988766544332 233444
Q ss_pred ccccccccc--hhHHHHHHhcCChHHHHHHHHHHHHHc-----------cC--ccccccCcccccceecccee-------
Q 018394 88 RQVIAVSKS--SDIVLMVLDASKSEGHRQILTKELEAV-----------GL--RLNKRPPQIYFKKKKTGGIS------- 145 (356)
Q Consensus 88 ~~~~~~~~~--~d~i~~v~d~~~~~~~~~~i~~~L~~~-----------~i--~l~~~~~~lS~g~~qr~~ia------- 145 (356)
.|....+.. .|++.+...... .+.+.+.++.. |+ .+......||+||+||+++|
T Consensus 415 ~q~~~lf~~ti~~Ni~~~~~~~~----~~~~~~a~~~~~~~~~i~~l~~g~~t~~~~~~~~LSgGq~qrl~lARall~~p 490 (585)
T TIGR01192 415 FQDAGLFNRSIRENIRLGREGAT----DEEVYEAAKAAAAHDFILKRSNGYDTLVGERGNRLSGGERQRLAIARAILKNA 490 (585)
T ss_pred ccCCccCcccHHHHHhcCCCCCC----HHHHHHHHHHhCcHHHHHhccccccchhcCCCCCCCHHHHHHHHHHHHHhcCC
Confidence 554444432 333322111111 11122222222 22 34556678999999999998
Q ss_pred --eeecCCCCCCCHHHHHHHHHHh---cccCcEEEEccCCCHHHHHHHHhccccccceEEEeecCCCC
Q 018394 146 --FNSTLPLTHVDEKLCYQILHEY---KIHNAEVLFREDATVDDLIDVIEGNRKYMKCVYVYNKIDVI 208 (356)
Q Consensus 146 --l~~DEp~~~LD~~~~~~il~~l---~~~~~~i~~thd~~~~~~~~~i~~~~~~~p~i~v~NK~Dl~ 208 (356)
+++||||++||.++...+.+.+ ..+.+++++||+.+.... .+.++++++..+.
T Consensus 491 ~ililDEpts~LD~~~~~~i~~~l~~~~~~~tvI~isH~~~~~~~----------~d~i~~l~~G~i~ 548 (585)
T TIGR01192 491 PILVLDEATSALDVETEARVKNAIDALRKNRTTFIIAHRLSTVRN----------ADLVLFLDQGRLI 548 (585)
T ss_pred CEEEEECCccCCCHHHHHHHHHHHHHHhCCCEEEEEEcChHHHHc----------CCEEEEEECCEEE
Confidence 9999999999999866555444 345699999999754322 4677888766443
No 330
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.77 E-value=1e-18 Score=152.47 Aligned_cols=128 Identities=16% Similarity=0.189 Sum_probs=90.0
Q ss_pred CCCCeEEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCccccccccccccceEEEECCEeecccCccccccccccCcccc
Q 018394 8 AGEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRG 87 (356)
Q Consensus 8 ~~~s~~v~~~~g~~v~LvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~~D~pGl~~~~~~~~~~~ 87 (356)
.+++|++.+ |+.++|+|+||||||||+++|+|...+ ..|.+.++|.++...+...+ ....++.
T Consensus 19 ~~i~~~i~~--G~~~~l~G~nGsGKstLl~~i~G~~~~-----------~~G~i~~~g~~~~~~~~~~~----~~~i~~~ 81 (171)
T cd03228 19 KDVSLTIKP--GEKVAIVGPSGSGKSTLLKLLLRLYDP-----------TSGEILIDGVDLRDLDLESL----RKNIAYV 81 (171)
T ss_pred cceEEEEcC--CCEEEEECCCCCCHHHHHHHHHcCCCC-----------CCCEEEECCEEhhhcCHHHH----HhhEEEE
Confidence 588999999 889999999999999999999999876 78999999987653321111 1111222
Q ss_pred ccccccccchhHHHHHHhcCChHHHHHHHHHHHHHccCccccccCcccccceecccee---------eeecCCCCCCCHH
Q 018394 88 RQVIAVSKSSDIVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGIS---------FNSTLPLTHVDEK 158 (356)
Q Consensus 88 ~~~~~~~~~~d~i~~v~d~~~~~~~~~~i~~~L~~~~i~l~~~~~~lS~g~~qr~~ia---------l~~DEp~~~LD~~ 158 (356)
. ++.. +... . +.+.+ ||+|++||+.++ +++||||++||+.
T Consensus 82 ~------~~~~----~~~~--t------~~e~l-------------LS~G~~~rl~la~al~~~p~llllDEP~~gLD~~ 130 (171)
T cd03228 82 P------QDPF----LFSG--T------IRENI-------------LSGGQRQRIAIARALLRDPPILILDEATSALDPE 130 (171)
T ss_pred c------CCch----hccc--h------HHHHh-------------hCHHHHHHHHHHHHHhcCCCEEEEECCCcCCCHH
Confidence 2 2211 0110 0 11111 899999999988 9999999999998
Q ss_pred HHHHH---HHHhcccCcEEEEccCCCHH
Q 018394 159 LCYQI---LHEYKIHNAEVLFREDATVD 183 (356)
Q Consensus 159 ~~~~i---l~~l~~~~~~i~~thd~~~~ 183 (356)
....+ +..+..+.+++++||+....
T Consensus 131 ~~~~l~~~l~~~~~~~tii~~sh~~~~~ 158 (171)
T cd03228 131 TEALILEALRALAKGKTVIVIAHRLSTI 158 (171)
T ss_pred HHHHHHHHHHHhcCCCEEEEEecCHHHH
Confidence 75544 44444445899999997654
No 331
>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]
Probab=99.77 E-value=2.1e-18 Score=177.36 Aligned_cols=178 Identities=15% Similarity=0.157 Sum_probs=124.2
Q ss_pred CCCCeEEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCccccccccccccceEEEECCEeecccCccccccccccCcccc
Q 018394 8 AGEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRG 87 (356)
Q Consensus 8 ~~~s~~v~~~~g~~v~LvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~~D~pGl~~~~~~~~~~~ 87 (356)
+++||.+++ |+++||+|++|||||||+|.|.+...+ ..|.|.+||.++.-++...++. .++.+
T Consensus 346 ~~is~~i~~--Ge~vaiVG~sGsGKSTl~~LL~r~~~~-----------~~G~I~idg~dI~~i~~~~lr~----~I~~V 408 (567)
T COG1132 346 KDISFSIEP--GEKVAIVGPSGSGKSTLIKLLLRLYDP-----------TSGEILIDGIDIRDISLDSLRK----RIGIV 408 (567)
T ss_pred cCceEEEcC--CCEEEEECCCCCCHHHHHHHHhccCCC-----------CCCeEEECCEehhhcCHHHHHH----hccEE
Confidence 789999999 889999999999999999999999866 8999999999998877655443 34555
Q ss_pred ccccccccc--hhHHHHHHhcCChHHHHHHHHHHHHHc-----------cC--ccccccCcccccceecccee-------
Q 018394 88 RQVIAVSKS--SDIVLMVLDASKSEGHRQILTKELEAV-----------GL--RLNKRPPQIYFKKKKTGGIS------- 145 (356)
Q Consensus 88 ~~~~~~~~~--~d~i~~v~d~~~~~~~~~~i~~~L~~~-----------~i--~l~~~~~~lS~g~~qr~~ia------- 145 (356)
.|....+.. .+++.+... ....+.+.+.++.. |+ .+...-..||+||+||++||
T Consensus 409 ~Qd~~LF~~TI~~NI~~g~~----~at~eei~~a~k~a~~~d~I~~lp~g~dt~vge~G~~LSgGQrQrlaiARall~~~ 484 (567)
T COG1132 409 SQDPLLFSGTIRENIALGRP----DATDEEIEEALKLANAHEFIANLPDGYDTIVGERGVNLSGGQRQRLAIARALLRNP 484 (567)
T ss_pred cccceeecccHHHHHhcCCC----CCCHHHHHHHHHHhChHHHHHhCcccccceecCCCccCCHHHHHHHHHHHHHhcCC
Confidence 666555552 344433221 11112333333333 22 33444568999999999998
Q ss_pred --eeecCCCCCCCHHHHHHH---HHHhcccCcEEEEccCCCHHHHHHHHhccccccceEEEeecCCCCChhhHHHH
Q 018394 146 --FNSTLPLTHVDEKLCYQI---LHEYKIHNAEVLFREDATVDDLIDVIEGNRKYMKCVYVYNKIDVIGIDDVDKL 216 (356)
Q Consensus 146 --l~~DEp~~~LD~~~~~~i---l~~l~~~~~~i~~thd~~~~~~~~~i~~~~~~~p~i~v~NK~Dl~~~~~~~~l 216 (356)
+++||||++||.++-..+ +..+..+.|+++++|..+.... .+.|+|+++.-+......+++
T Consensus 485 ~ILILDEaTSalD~~tE~~I~~~l~~l~~~rT~iiIaHRlsti~~----------aD~IiVl~~G~i~e~G~h~eL 550 (567)
T COG1132 485 PILILDEATSALDTETEALIQDALKKLLKGRTTLIIAHRLSTIKN----------ADRIIVLDNGRIVERGTHEEL 550 (567)
T ss_pred CEEEEeccccccCHHhHHHHHHHHHHHhcCCEEEEEeccHhHHHh----------CCEEEEEECCEEEEecCHHHH
Confidence 999999999999884444 4434445589999999754322 367888887765443333443
No 332
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=99.77 E-value=1.6e-18 Score=151.51 Aligned_cols=127 Identities=17% Similarity=0.262 Sum_probs=88.9
Q ss_pred CCCCeEEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCccccccccccccceEEEECCEeecccCccccccccccCcccc
Q 018394 8 AGEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRG 87 (356)
Q Consensus 8 ~~~s~~v~~~~g~~v~LvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~~D~pGl~~~~~~~~~~~ 87 (356)
.+++|++.+ |+.++|+|+||||||||+++|+|...+ ..|.+.++|.++.-.+... .....++.
T Consensus 19 ~~~~~~i~~--Ge~~~i~G~nGsGKStLl~~l~G~~~~-----------~~G~i~~~g~~~~~~~~~~----~~~~i~~~ 81 (173)
T cd03246 19 RNVSFSIEP--GESLAIIGPSGSGKSTLARLILGLLRP-----------TSGRVRLDGADISQWDPNE----LGDHVGYL 81 (173)
T ss_pred eeeEEEECC--CCEEEEECCCCCCHHHHHHHHHhccCC-----------CCCeEEECCEEcccCCHHH----HHhheEEE
Confidence 578999999 889999999999999999999999866 7899999998764322111 11112222
Q ss_pred ccccccccchhHHHHHHhcCChHHHHHHHHHHHHHccCccccccCcccccceecccee---------eeecCCCCCCCHH
Q 018394 88 RQVIAVSKSSDIVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGIS---------FNSTLPLTHVDEK 158 (356)
Q Consensus 88 ~~~~~~~~~~d~i~~v~d~~~~~~~~~~i~~~L~~~~i~l~~~~~~lS~g~~qr~~ia---------l~~DEp~~~LD~~ 158 (356)
.| +..+ .. .. +.+.+ ||+|++||++++ +++||||++||+.
T Consensus 82 ~q------~~~~----~~--~t------v~~~l-------------LS~G~~qrv~la~al~~~p~~lllDEPt~~LD~~ 130 (173)
T cd03246 82 PQ------DDEL----FS--GS------IAENI-------------LSGGQRQRLGLARALYGNPRILVLDEPNSHLDVE 130 (173)
T ss_pred CC------CCcc----cc--Cc------HHHHC-------------cCHHHHHHHHHHHHHhcCCCEEEEECCccccCHH
Confidence 22 2110 00 00 11111 899999999988 9999999999998
Q ss_pred HHHHH---HHHhcc-cCcEEEEccCCCH
Q 018394 159 LCYQI---LHEYKI-HNAEVLFREDATV 182 (356)
Q Consensus 159 ~~~~i---l~~l~~-~~~~i~~thd~~~ 182 (356)
....+ ++.+.. +.+++++||+...
T Consensus 131 ~~~~l~~~l~~~~~~~~tii~~sh~~~~ 158 (173)
T cd03246 131 GERALNQAIAALKAAGATRIVIAHRPET 158 (173)
T ss_pred HHHHHHHHHHHHHhCCCEEEEEeCCHHH
Confidence 85544 444433 4589999999754
No 333
>cd04938 TGS_Obg-like TGS_Obg-like: The C-terminal TGS domain of Obg-like GTPases such as those present in DRG (developmentally regulated GTP-binding protein), and GTP-binding proteins Ygr210 and YchF. The TGS domain (named after the ThrRS, GTPase, and SpoT proteins where it occurs) is a small domain of about 50 amino acid residues with a predominantly beta-sheet structure. There is no direct information on the function of the TGS domain, but its presence in two types of regulatory proteins (the GTPases and guanosine polyphosphate phosphohydrolases/synthetases) suggests a ligand (most likely nucleotide)-binding, regulatory role.
Probab=99.76 E-value=1.3e-18 Score=130.65 Aligned_cols=69 Identities=23% Similarity=0.282 Sum_probs=64.2
Q ss_pred ceEEEeCCCCCC-------CCCCccEEeecCCCCCCHHHHHHHHHHhHhhcCcEeEEeccCCccCCcccCCCceeCCCCe
Q 018394 246 LVRVYTKPQGQQ-------PDFTEPVVLSVDRGGCTVEDFCNHIHRSLVKDVKYVLVWGTSARHYPQHCGLGHVLQDEDV 318 (356)
Q Consensus 246 ~i~~~~~~~~~~-------p~~~~~~~~~~~r~g~~v~~~a~~ih~~l~~~f~~a~~wg~s~~~~~~~vg~~~~l~d~Dv 318 (356)
++++||++.+.. |++++||++++ |+|++++|..||+||.++|+||.+|| +|++|+||+|+||||
T Consensus 1 li~VYpv~~~~~~~~~~~g~d~~~~~~l~~---g~tv~d~a~~IH~d~~~~F~~A~v~~------~~~vg~d~~l~d~DV 71 (76)
T cd04938 1 LIPVYPVKNIHTFTNGSGGNVFRDCVLVKK---GTTVGDVARKIHGDLEKGFIEAVGGR------RRLEGKDVILGKNDI 71 (76)
T ss_pred CEEEEEcCCCccccCcCCCCccceeEEEcC---CCCHHHHHHHHhHHHHhccEEEEEcc------CEEECCCEEecCCCE
Confidence 478999887755 89999999998 99999999999999999999999998 899999999999999
Q ss_pred EEEEe
Q 018394 319 VQIVK 323 (356)
Q Consensus 319 v~i~~ 323 (356)
|+|+.
T Consensus 72 v~i~~ 76 (76)
T cd04938 72 LKFKT 76 (76)
T ss_pred EEEEC
Confidence 99973
No 334
>KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.76 E-value=1.4e-18 Score=175.56 Aligned_cols=178 Identities=16% Similarity=0.134 Sum_probs=132.5
Q ss_pred CCCCeEEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCccccccccccccceEEEECCEeecccCccccccccccCcccc
Q 018394 8 AGEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRG 87 (356)
Q Consensus 8 ~~~s~~v~~~~g~~v~LvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~~D~pGl~~~~~~~~~~~ 87 (356)
+|+||++++ |+.||||||+|+||||+.+.|...+.| +.|.|.+||.|+.-+|..-++ ..++.+
T Consensus 485 k~lsfti~p--Ge~vALVGPSGsGKSTiasLL~rfY~P-----------tsG~IllDG~~i~~~~~~~lr----~~Ig~V 547 (716)
T KOG0058|consen 485 KNLSFTIRP--GEVVALVGPSGSGKSTIASLLLRFYDP-----------TSGRILLDGVPISDINHKYLR----RKIGLV 547 (716)
T ss_pred cCceeeeCC--CCEEEEECCCCCCHHHHHHHHHHhcCC-----------CCCeEEECCeehhhcCHHHHH----HHeeee
Confidence 689999999 889999999999999999999999876 899999999999988854433 345666
Q ss_pred ccccccccc--hhHHHHHHhcCChHHHHHHHHHHHHHccC-------------ccccccCcccccceecccee-------
Q 018394 88 RQVIAVSKS--SDIVLMVLDASKSEGHRQILTKELEAVGL-------------RLNKRPPQIYFKKKKTGGIS------- 145 (356)
Q Consensus 88 ~~~~~~~~~--~d~i~~v~d~~~~~~~~~~i~~~L~~~~i-------------~l~~~~~~lS~g~~qr~~ia------- 145 (356)
-|.+..+.. .|+|.+..+... .+ .++...+..+- ....+-.+||||||||.+||
T Consensus 548 ~QEPvLFs~sI~eNI~YG~~~~t-~e---~i~~AAk~ANah~FI~~~p~gY~T~VGEkG~qLSGGQKQRIAIARALlr~P 623 (716)
T KOG0058|consen 548 GQEPVLFSGSIRENIAYGLDNAT-DE---EIEAAAKMANAHEFITNFPDGYNTVVGEKGSQLSGGQKQRIAIARALLRNP 623 (716)
T ss_pred eccceeecccHHHHHhcCCCCCC-HH---HHHHHHHHhChHHHHHhCccccccccCCccccccchHHHHHHHHHHHhcCC
Confidence 666655544 677777666222 22 22222222211 33445568999999999999
Q ss_pred --eeecCCCCCCCHHH---HHHHHHHhcccCcEEEEccCCCHHHHHHHHhccccccceEEEeecCCCCChhhHHHH
Q 018394 146 --FNSTLPLTHVDEKL---CYQILHEYKIHNAEVLFREDATVDDLIDVIEGNRKYMKCVYVYNKIDVIGIDDVDKL 216 (356)
Q Consensus 146 --l~~DEp~~~LD~~~---~~~il~~l~~~~~~i~~thd~~~~~~~~~i~~~~~~~p~i~v~NK~Dl~~~~~~~~l 216 (356)
+++||.|++||.+. +++.|.....+.|++++.|..+-.+. -..|+|++|.-+......+++
T Consensus 624 ~VLILDEATSALDaeSE~lVq~aL~~~~~~rTVlvIAHRLSTV~~----------Ad~Ivvi~~G~V~E~G~h~eL 689 (716)
T KOG0058|consen 624 RVLILDEATSALDAESEYLVQEALDRLMQGRTVLVIAHRLSTVRH----------ADQIVVIDKGRVVEMGTHDEL 689 (716)
T ss_pred CEEEEechhhhcchhhHHHHHHHHHHhhcCCeEEEEehhhhHhhh----------ccEEEEEcCCeEEecccHHHH
Confidence 99999999999876 77888777777899999998654332 368999999876544333444
No 335
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=99.76 E-value=2.3e-18 Score=193.95 Aligned_cols=174 Identities=14% Similarity=0.106 Sum_probs=126.2
Q ss_pred CCCCeEEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCccccccccccccceEEEECCEeecccCccccccccccCcccc
Q 018394 8 AGEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRG 87 (356)
Q Consensus 8 ~~~s~~v~~~~g~~v~LvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~~D~pGl~~~~~~~~~~~ 87 (356)
+++||.|.+ |+++||+|+|||||||||++|+|...| ..|.+.++|.++.- +. ......+++.
T Consensus 1956 ~~ISf~I~~--GEi~gLLG~NGAGKTTLlkmL~Gll~p-----------tsG~I~i~G~~i~~-~~----~~~r~~IGy~ 2017 (2272)
T TIGR01257 1956 DRLCVGVRP--GECFGLLGVNGAGKTTTFKMLTGDTTV-----------TSGDATVAGKSILT-NI----SDVHQNMGYC 2017 (2272)
T ss_pred EeeEEEEcC--CcEEEEECCCCCcHHHHHHHHhCCCCC-----------CccEEEECCEECcc-hH----HHHhhhEEEE
Confidence 689999999 889999999999999999999999877 89999999988631 11 1122345555
Q ss_pred cccccccc---chhHHHHHHhcC--ChHHHHHHHHHHHHHccC--ccccccCcccccceecccee---------eeecCC
Q 018394 88 RQVIAVSK---SSDIVLMVLDAS--KSEGHRQILTKELEAVGL--RLNKRPPQIYFKKKKTGGIS---------FNSTLP 151 (356)
Q Consensus 88 ~~~~~~~~---~~d~i~~v~d~~--~~~~~~~~i~~~L~~~~i--~l~~~~~~lS~g~~qr~~ia---------l~~DEp 151 (356)
.|....+. ..+.+.+..... ......+.+.+.|+.+++ ..++++..||+|++||+++| +++|||
T Consensus 2018 pQ~~~L~~~LTv~E~L~l~a~l~g~~~~~~~~~v~~lLe~lgL~~~~dk~~~~LSGGqKqRLslA~ALi~~P~VLLLDEP 2097 (2272)
T TIGR01257 2018 PQFDAIDDLLTGREHLYLYARLRGVPAEEIEKVANWSIQSLGLSLYADRLAGTYSGGNKRKLSTAIALIGCPPLVLLDEP 2097 (2272)
T ss_pred eccccCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHHHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEECC
Confidence 66544333 344444432222 222234557788999999 67899999999999999888 899999
Q ss_pred CCCCCHHHHHH---HHHHhc-ccCcEEEEccCCCHHHHHHHHhccccccceEEEeecCCCC
Q 018394 152 LTHVDEKLCYQ---ILHEYK-IHNAEVLFREDATVDDLIDVIEGNRKYMKCVYVYNKIDVI 208 (356)
Q Consensus 152 ~~~LD~~~~~~---il~~l~-~~~~~i~~thd~~~~~~~~~i~~~~~~~p~i~v~NK~Dl~ 208 (356)
|++||+...+. +++.+. .+.++|++||+++..+. .+..++++++.-+.
T Consensus 2098 TsGLDp~sr~~l~~lL~~l~~~g~TIILtTH~mee~e~---------lcDrV~IL~~G~i~ 2149 (2272)
T TIGR01257 2098 TTGMDPQARRMLWNTIVSIIREGRAVVLTSHSMEECEA---------LCTRLAIMVKGAFQ 2149 (2272)
T ss_pred CCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHH---------hCCEEEEEECCEEE
Confidence 99999998554 444543 34599999999765442 23667777765443
No 336
>PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional
Probab=99.76 E-value=4.1e-18 Score=174.51 Aligned_cols=165 Identities=13% Similarity=0.025 Sum_probs=113.9
Q ss_pred CCCCeEEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCccccccccccccceEEEECCEeecccCccccccccccCcccc
Q 018394 8 AGEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRG 87 (356)
Q Consensus 8 ~~~s~~v~~~~g~~v~LvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~~D~pGl~~~~~~~~~~~ 87 (356)
+++||++++ |+.++|+|+||||||||+++|+|...| ..|.+.++|.++.-.+...++. .++..
T Consensus 340 ~~i~~~i~~--G~~~aivG~sGsGKSTL~~ll~g~~~~-----------~~G~i~~~g~~~~~~~~~~~~~----~i~~v 402 (547)
T PRK10522 340 GPINLTIKR--GELLFLIGGNGSGKSTLAMLLTGLYQP-----------QSGEILLDGKPVTAEQPEDYRK----LFSAV 402 (547)
T ss_pred ecceEEEcC--CCEEEEECCCCCCHHHHHHHHhCCCCC-----------CCeEEEECCEECCCCCHHHHhh----heEEE
Confidence 689999999 889999999999999999999999876 8999999999887555433321 22333
Q ss_pred ccccccccchhHHHHHHhcCChHHHHHHHHHHHHHccC--ccccc-----cCcccccceecccee---------eeecCC
Q 018394 88 RQVIAVSKSSDIVLMVLDASKSEGHRQILTKELEAVGL--RLNKR-----PPQIYFKKKKTGGIS---------FNSTLP 151 (356)
Q Consensus 88 ~~~~~~~~~~d~i~~v~d~~~~~~~~~~i~~~L~~~~i--~l~~~-----~~~lS~g~~qr~~ia---------l~~DEp 151 (356)
.|....+... +.+. ......+.+.+.++.+++ ..... -..||+||+||+++| +++|||
T Consensus 403 ~q~~~lf~~t-----i~~n-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~G~~LSgGq~qRl~lARal~~~~~ililDE~ 476 (547)
T PRK10522 403 FTDFHLFDQL-----LGPE-GKPANPALVEKWLERLKMAHKLELEDGRISNLKLSKGQKKRLALLLALAEERDILLLDEW 476 (547)
T ss_pred ecChhHHHHh-----hccc-cCchHHHHHHHHHHHcCCchhhhccccCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEECC
Confidence 3322211110 0111 112233456777888777 22211 247999999999998 999999
Q ss_pred CCCCCHHHHHHHHHHhc-----ccCcEEEEccCCCHHHHHHHHhccccccceEEEeecC
Q 018394 152 LTHVDEKLCYQILHEYK-----IHNAEVLFREDATVDDLIDVIEGNRKYMKCVYVYNKI 205 (356)
Q Consensus 152 ~~~LD~~~~~~il~~l~-----~~~~~i~~thd~~~~~~~~~i~~~~~~~p~i~v~NK~ 205 (356)
|++||+++...+++.+. .+.|++++||+.+.... .+.++++++.
T Consensus 477 ts~LD~~~~~~i~~~l~~~~~~~~~tvi~itH~~~~~~~----------~d~i~~l~~G 525 (547)
T PRK10522 477 AADQDPHFRREFYQVLLPLLQEMGKTIFAISHDDHYFIH----------ADRLLEMRNG 525 (547)
T ss_pred CCCCCHHHHHHHHHHHHHHHHhCCCEEEEEEechHHHHh----------CCEEEEEECC
Confidence 99999998666554442 25699999998643322 3566777654
No 337
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=99.76 E-value=4.4e-18 Score=174.45 Aligned_cols=147 Identities=14% Similarity=0.144 Sum_probs=102.1
Q ss_pred CCCCeEEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCccccccccccccceEEEECCE-eecccCccccccccccCccc
Q 018394 8 AGEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDT-KIQLLDLPGIIEGASEGKGR 86 (356)
Q Consensus 8 ~~~s~~v~~~~g~~v~LvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~-~i~~~D~pGl~~~~~~~~~~ 86 (356)
.++||++.+ |++++|+|+|||||||||++|+|...| ..|.|.+++. .+. +
T Consensus 22 ~~is~~i~~--Ge~~~liG~NGsGKSTLl~~i~G~~~p-----------~~G~i~~~~~~~i~------~---------- 72 (552)
T TIGR03719 22 KDISLSFFP--GAKIGVLGLNGAGKSTLLRIMAGVDKE-----------FNGEARPAPGIKVG------Y---------- 72 (552)
T ss_pred cCceEEECC--CCEEEEECCCCCCHHHHHHHHhCCCCC-----------CCceEEecCCCEEE------E----------
Confidence 689999999 889999999999999999999999766 7898887642 111 1
Q ss_pred ccccccc---ccchhHHHHHHh--------------------------------------cCChHHHHHHHHHHHHHccC
Q 018394 87 GRQVIAV---SKSSDIVLMVLD--------------------------------------ASKSEGHRQILTKELEAVGL 125 (356)
Q Consensus 87 ~~~~~~~---~~~~d~i~~v~d--------------------------------------~~~~~~~~~~i~~~L~~~~i 125 (356)
..|.... ....+.+.+.+. ..+.......+.+.|+.+++
T Consensus 73 v~Q~~~~~~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l 152 (552)
T TIGR03719 73 LPQEPQLDPTKTVRENVEEGVAEIKDALDRFNEISAKFAEPDADMDALLAEQAELQEIIDAADAWDLDRKLEIAMDALRC 152 (552)
T ss_pred EeccCCCCCCCcHHHHHHHhhHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhcCcchhHHHHHHHHhhCCC
Confidence 1111111 111222222110 00000011345667777787
Q ss_pred -ccccccCcccccceecccee---------eeecCCCCCCCHHHHHHHHHHhcc-cCcEEEEccCCCHH
Q 018394 126 -RLNKRPPQIYFKKKKTGGIS---------FNSTLPLTHVDEKLCYQILHEYKI-HNAEVLFREDATVD 183 (356)
Q Consensus 126 -~l~~~~~~lS~g~~qr~~ia---------l~~DEp~~~LD~~~~~~il~~l~~-~~~~i~~thd~~~~ 183 (356)
..++++..||+||+||+.|+ +++||||++||+.....+.+.+.. ..++|++|||....
T Consensus 153 ~~~~~~~~~LSgGqkqrv~la~al~~~p~lLLLDEPt~~LD~~~~~~l~~~L~~~~~tvIiisHd~~~~ 221 (552)
T TIGR03719 153 PPWDADVTKLSGGERRRVALCRLLLSKPDMLLLDEPTNHLDAESVAWLEQHLQEYPGTVVAVTHDRYFL 221 (552)
T ss_pred CcccCchhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCChHHHHHHHHHHHhCCCeEEEEeCCHHHH
Confidence 56788999999999999988 999999999999987766655542 35999999997654
No 338
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=99.76 E-value=2.7e-18 Score=148.74 Aligned_cols=115 Identities=17% Similarity=0.199 Sum_probs=85.9
Q ss_pred CCCCeEEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCccccccccccccceEEEECCEeecccCccccccccccCcccc
Q 018394 8 AGEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRG 87 (356)
Q Consensus 8 ~~~s~~v~~~~g~~v~LvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~~D~pGl~~~~~~~~~~~ 87 (356)
.+++|++.+ |+.++|+|+||||||||+++|+|...| ..|.+.++|.++...+.... .....++
T Consensus 17 ~~i~~~i~~--Ge~~~l~G~nGsGKSTLl~~i~G~~~~-----------~~G~v~~~g~~~~~~~~~~~---~~~~i~~- 79 (163)
T cd03216 17 DGVSLSVRR--GEVHALLGENGAGKSTLMKILSGLYKP-----------DSGEILVDGKEVSFASPRDA---RRAGIAM- 79 (163)
T ss_pred eeeEEEEeC--CCEEEEECCCCCCHHHHHHHHhCCCCC-----------CCeEEEECCEECCcCCHHHH---HhcCeEE-
Confidence 578999999 889999999999999999999999876 78999999976543211000 0000110
Q ss_pred ccccccccchhHHHHHHhcCChHHHHHHHHHHHHHccCccccccCcccccceecccee---------eeecCCCCCCCHH
Q 018394 88 RQVIAVSKSSDIVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGIS---------FNSTLPLTHVDEK 158 (356)
Q Consensus 88 ~~~~~~~~~~d~i~~v~d~~~~~~~~~~i~~~L~~~~i~l~~~~~~lS~g~~qr~~ia---------l~~DEp~~~LD~~ 158 (356)
.++||+||+||++++ +++||||++||..
T Consensus 80 -------------------------------------------~~qLS~G~~qrl~laral~~~p~illlDEP~~~LD~~ 116 (163)
T cd03216 80 -------------------------------------------VYQLSVGERQMVEIARALARNARLLILDEPTAALTPA 116 (163)
T ss_pred -------------------------------------------EEecCHHHHHHHHHHHHHhcCCCEEEEECCCcCCCHH
Confidence 112899999999988 9999999999998
Q ss_pred HHHHH---HHHhcc-cCcEEEEccCCCH
Q 018394 159 LCYQI---LHEYKI-HNAEVLFREDATV 182 (356)
Q Consensus 159 ~~~~i---l~~l~~-~~~~i~~thd~~~ 182 (356)
....+ ++++.. +.+++++||+...
T Consensus 117 ~~~~l~~~l~~~~~~~~tiii~sh~~~~ 144 (163)
T cd03216 117 EVERLFKVIRRLRAQGVAVIFISHRLDE 144 (163)
T ss_pred HHHHHHHHHHHHHHCCCEEEEEeCCHHH
Confidence 85554 444432 4589999999753
No 339
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=99.76 E-value=2.8e-18 Score=149.05 Aligned_cols=121 Identities=13% Similarity=0.061 Sum_probs=87.8
Q ss_pred CCCCeEEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCccccccccccccceEEEECCEeecccCccccccccccCcccc
Q 018394 8 AGEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRG 87 (356)
Q Consensus 8 ~~~s~~v~~~~g~~v~LvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~~D~pGl~~~~~~~~~~~ 87 (356)
++++|++.+ |++++|+|+||||||||+++|+|...+ ..|.+.+++.. .+++.
T Consensus 18 ~~i~l~i~~--Ge~~~i~G~nGsGKSTLl~~l~G~~~~-----------~~G~i~~~~~~---------------~i~~~ 69 (166)
T cd03223 18 KDLSFEIKP--GDRLLITGPSGTGKSSLFRALAGLWPW-----------GSGRIGMPEGE---------------DLLFL 69 (166)
T ss_pred ecCeEEECC--CCEEEEECCCCCCHHHHHHHHhcCCCC-----------CCceEEECCCc---------------eEEEE
Confidence 689999999 889999999999999999999999866 78999887631 01111
Q ss_pred ccccccc--cchhHHHHHHhcCChHHHHHHHHHHHHHccCccccccCcccccceecccee---------eeecCCCCCCC
Q 018394 88 RQVIAVS--KSSDIVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGIS---------FNSTLPLTHVD 156 (356)
Q Consensus 88 ~~~~~~~--~~~d~i~~v~d~~~~~~~~~~i~~~L~~~~i~l~~~~~~lS~g~~qr~~ia---------l~~DEp~~~LD 156 (356)
.|....+ .-.+.+.+ . .+..||+|++||++++ +++||||++||
T Consensus 70 ~q~~~~~~~tv~~nl~~--------------------~------~~~~LS~G~~~rv~laral~~~p~~lllDEPt~~LD 123 (166)
T cd03223 70 PQRPYLPLGTLREQLIY--------------------P------WDDVLSGGEQQRLAFARLLLHKPKFVFLDEATSALD 123 (166)
T ss_pred CCCCccccccHHHHhhc--------------------c------CCCCCCHHHHHHHHHHHHHHcCCCEEEEECCccccC
Confidence 1211100 00111100 0 3578999999999988 99999999999
Q ss_pred HHHHHHHHHHhcc-cCcEEEEccCCCH
Q 018394 157 EKLCYQILHEYKI-HNAEVLFREDATV 182 (356)
Q Consensus 157 ~~~~~~il~~l~~-~~~~i~~thd~~~ 182 (356)
+.....+.+.+.. ..+++++||+...
T Consensus 124 ~~~~~~l~~~l~~~~~tiiivsh~~~~ 150 (166)
T cd03223 124 EESEDRLYQLLKELGITVISVGHRPSL 150 (166)
T ss_pred HHHHHHHHHHHHHhCCEEEEEeCChhH
Confidence 9886665555442 4689999999754
No 340
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=99.76 E-value=4.5e-18 Score=161.38 Aligned_cols=186 Identities=18% Similarity=0.177 Sum_probs=132.3
Q ss_pred CCCCeEEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCccccccccccccceEEEECCEeecccCccccccccccCcccc
Q 018394 8 AGEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRG 87 (356)
Q Consensus 8 ~~~s~~v~~~~g~~v~LvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~~D~pGl~~~~~~~~~~~ 87 (356)
.++||++.. |+.+||||.+|||||||=.+|.++..+ .|.|.|.|.++.-.+-..+++.. .....+
T Consensus 304 d~isl~L~~--gqTlGlVGESGSGKsTlG~allrL~~s------------~G~I~F~G~~i~~~~~~~mrplR-~~mQvV 368 (534)
T COG4172 304 DGISLTLRR--GQTLGLVGESGSGKSTLGLALLRLIPS------------QGEIRFDGQDIDGLSRKEMRPLR-RRMQVV 368 (534)
T ss_pred ccceeEecC--CCeEEEEecCCCCcchHHHHHHhhcCc------------CceEEECCccccccChhhhhhhh-hhceEE
Confidence 589999999 889999999999999999999999765 69999999998766654443321 222333
Q ss_pred ccccc--cccc---hhHHHHHHhc----CChHHHHHHHHHHHHHccC---ccccccCcccccceecccee---------e
Q 018394 88 RQVIA--VSKS---SDIVLMVLDA----SKSEGHRQILTKELEAVGL---RLNKRPPQIYFKKKKTGGIS---------F 146 (356)
Q Consensus 88 ~~~~~--~~~~---~d~i~~v~d~----~~~~~~~~~i~~~L~~~~i---~l~~~~~~lS~g~~qr~~ia---------l 146 (356)
+|.++ .-+. .++|-.-+.. ....+..+++.+.|+.+|+ ..+++|.++||||+||.+|| +
T Consensus 369 FQDPygSLsPRmtV~qII~EGL~vh~~~ls~~eR~~rv~~aL~EVGLDp~~r~RYPhEFSGGQRQRIAIARAliLkP~~i 448 (534)
T COG4172 369 FQDPYGSLSPRMTVGQIIEEGLRVHEPKLSAAERDQRVIEALEEVGLDPATRNRYPHEFSGGQRQRIAIARALILKPELI 448 (534)
T ss_pred EeCCCCCCCcccCHHHHhhhhhhhcCCCCCHHHHHHHHHHHHHHcCCChhHhhcCCcccCcchhhHHHHHHHHhcCCcEE
Confidence 44322 1112 2333222221 1234456778999999999 68999999999999999998 8
Q ss_pred eecCCCCCCCHHHHH---HHHHHhcc-c-CcEEEEccCCCHHHHHHHHhccccccceEEEeecCCCCChhhHHHHh
Q 018394 147 NSTLPLTHVDEKLCY---QILHEYKI-H-NAEVLFREDATVDDLIDVIEGNRKYMKCVYVYNKIDVIGIDDVDKLA 217 (356)
Q Consensus 147 ~~DEp~~~LD~~~~~---~il~~l~~-~-~~~i~~thd~~~~~~~~~i~~~~~~~p~i~v~NK~Dl~~~~~~~~l~ 217 (356)
++||||++||..... ++|+.+.. + -+-++++||..+...+ +..++|+-..-++.....+.+.
T Consensus 449 ~LDEPTSALD~SVQaQvv~LLr~LQ~k~~LsYLFISHDL~VvrAl---------~~~viVm~~GkiVE~G~~~~if 515 (534)
T COG4172 449 LLDEPTSALDRSVQAQVLDLLRDLQQKHGLSYLFISHDLAVVRAL---------CHRVIVMRDGKIVEQGPTEAVF 515 (534)
T ss_pred EecCCchHhhHHHHHHHHHHHHHHHHHhCCeEEEEeccHHHHHHh---------hceEEEEeCCEEeeeCCHHHHh
Confidence 999999999987644 45555542 2 3889999998765432 3667788777666554444444
No 341
>COG4778 PhnL ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.76 E-value=2.7e-18 Score=145.62 Aligned_cols=163 Identities=20% Similarity=0.144 Sum_probs=120.0
Q ss_pred CCCCeEEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCccccccccccccceEEEEC--CEeecccC--ccccccccccC
Q 018394 8 AGEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYN--DTKIQLLD--LPGIIEGASEG 83 (356)
Q Consensus 8 ~~~s~~v~~~~g~~v~LvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~--g~~i~~~D--~pGl~~~~~~~ 83 (356)
.++||++.. |++++|=||+|+||||||++|-+.+.+ .+|.|.+. |.-+.+.. ...+..-.+..
T Consensus 28 ~~vslsV~a--GECvvL~G~SG~GKStllr~LYaNY~~-----------d~G~I~v~H~g~~vdl~~a~pr~vl~vRr~T 94 (235)
T COG4778 28 RNVSLSVNA--GECVVLHGPSGSGKSTLLRSLYANYLP-----------DEGQILVRHEGEWVDLVTAEPREVLEVRRTT 94 (235)
T ss_pred eceeEEecC--ccEEEeeCCCCCcHHHHHHHHHhccCC-----------CCceEEEEeCcchhhhhccChHHHHHHHHhh
Confidence 478999999 889999999999999999999999877 89998774 33232221 11122223456
Q ss_pred ccccccccccccchhHHHHHHh-----cCChHHHHHHHHHHHHHccC---ccccccCcccccceecccee---------e
Q 018394 84 KGRGRQVIAVSKSSDIVLMVLD-----ASKSEGHRQILTKELEAVGL---RLNKRPPQIYFKKKKTGGIS---------F 146 (356)
Q Consensus 84 ~~~~~~~~~~~~~~d~i~~v~d-----~~~~~~~~~~i~~~L~~~~i---~l~~~~~~lS~g~~qr~~ia---------l 146 (356)
+|++.||+..++....+..+.. .........++..+|.++++ ...-.|..+|||++||+.|+ +
T Consensus 95 iGyVSQFLRviPRV~aLdVvaePll~~gv~~~~a~~~a~~Ll~rLnlperLW~LaPaTFSGGEqQRVNIaRgfivd~pIL 174 (235)
T COG4778 95 IGYVSQFLRVIPRVSALDVVAEPLLARGVPREVARAKAADLLTRLNLPERLWSLAPATFSGGEQQRVNIARGFIVDYPIL 174 (235)
T ss_pred hHHHHHHHHhccCcchHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCCHHHhcCCCcccCCchheehhhhhhhhccCceE
Confidence 7888899988877544433322 22334455678889999999 45667889999999999998 8
Q ss_pred eecCCCCCCCHHH---HHHHHHHhcc-cCcEEEEccCCCHH
Q 018394 147 NSTLPLTHVDEKL---CYQILHEYKI-HNAEVLFREDATVD 183 (356)
Q Consensus 147 ~~DEp~~~LD~~~---~~~il~~l~~-~~~~i~~thd~~~~ 183 (356)
++||||++||..+ +.+++++-+. +.+++-+-||.+..
T Consensus 175 LLDEPTasLDa~Nr~vVveli~e~Ka~GaAlvGIFHDeevr 215 (235)
T COG4778 175 LLDEPTASLDATNRAVVVELIREAKARGAALVGIFHDEEVR 215 (235)
T ss_pred EecCCcccccccchHHHHHHHHHHHhcCceEEEeeccHHHH
Confidence 8999999999876 5566666654 44788888987654
No 342
>PLN03211 ABC transporter G-25; Provisional
Probab=99.76 E-value=9.6e-18 Score=174.49 Aligned_cols=156 Identities=18% Similarity=0.133 Sum_probs=110.2
Q ss_pred CCCCeEEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCccccccccccccceEEEECCEeecccCccccccccccCcccc
Q 018394 8 AGEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRG 87 (356)
Q Consensus 8 ~~~s~~v~~~~g~~v~LvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~~D~pGl~~~~~~~~~~~ 87 (356)
+++|+++.+ |+.+||+|||||||||||++|+|...+ +...|.|.++|.++.. .. ....+..
T Consensus 85 ~~vs~~i~~--Ge~~aI~GpnGaGKSTLL~iLaG~~~~---------~~~sG~I~inG~~~~~----~~----~~~i~yv 145 (659)
T PLN03211 85 NGVTGMASP--GEILAVLGPSGSGKSTLLNALAGRIQG---------NNFTGTILANNRKPTK----QI----LKRTGFV 145 (659)
T ss_pred eCCEEEEEC--CEEEEEECCCCCCHHHHHHHHhCCCCC---------CceeEEEEECCEECch----hh----ccceEEE
Confidence 589999999 889999999999999999999998754 1148999999987631 11 1123444
Q ss_pred ccccccc---cchhHHHHHHhcC-----ChHHHHHHHHHHHHHccC--cc-----ccccCcccccceecccee-------
Q 018394 88 RQVIAVS---KSSDIVLMVLDAS-----KSEGHRQILTKELEAVGL--RL-----NKRPPQIYFKKKKTGGIS------- 145 (356)
Q Consensus 88 ~~~~~~~---~~~d~i~~v~d~~-----~~~~~~~~i~~~L~~~~i--~l-----~~~~~~lS~g~~qr~~ia------- 145 (356)
.|....+ ...+.+.+..... ...+..+.+.+.++.+|+ .. ++....||+||+||+.||
T Consensus 146 ~Q~~~l~~~lTV~E~l~~~a~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSgGerqRv~ia~aL~~~P 225 (659)
T PLN03211 146 TQDDILYPHLTVRETLVFCSLLRLPKSLTKQEKILVAESVISELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINP 225 (659)
T ss_pred CcccccCCcCCHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHcCChhhcCceeCCCCCCCcChhhhhHHHHHHHHHhCC
Confidence 4433222 3345554432211 112234567888999998 22 345678999999999998
Q ss_pred --eeecCCCCCCCHHHHHHHHH---Hhc-ccCcEEEEccCCCH
Q 018394 146 --FNSTLPLTHVDEKLCYQILH---EYK-IHNAEVLFREDATV 182 (356)
Q Consensus 146 --l~~DEp~~~LD~~~~~~il~---~l~-~~~~~i~~thd~~~ 182 (356)
+++||||++||......+++ .+. .+.++++++|+.+.
T Consensus 226 ~iLlLDEPtsgLD~~~~~~l~~~L~~l~~~g~TvI~~sH~~~~ 268 (659)
T PLN03211 226 SLLILDEPTSGLDATAAYRLVLTLGSLAQKGKTIVTSMHQPSS 268 (659)
T ss_pred CEEEEeCCCCCcCHHHHHHHHHHHHHHHhCCCEEEEEecCCCH
Confidence 99999999999988555544 443 35699999999863
No 343
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=99.76 E-value=4.5e-18 Score=149.87 Aligned_cols=133 Identities=14% Similarity=0.127 Sum_probs=89.9
Q ss_pred CCCCeEEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCccccccccccccceEEEECCEeecccCccccccccccCcccc
Q 018394 8 AGEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRG 87 (356)
Q Consensus 8 ~~~s~~v~~~~g~~v~LvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~~D~pGl~~~~~~~~~~~ 87 (356)
.+++|++.+ |+.++|+|+||||||||+++|+|...+ ..|.+.++|.++...+... ......++.
T Consensus 17 ~~vs~~i~~--G~~~~i~G~nGsGKSTLl~~l~G~~~~-----------~~G~i~~~g~~~~~~~~~~---~~~~~i~~~ 80 (182)
T cd03215 17 RDVSFEVRA--GEIVGIAGLVGNGQTELAEALFGLRPP-----------ASGEITLDGKPVTRRSPRD---AIRAGIAYV 80 (182)
T ss_pred cceEEEEcC--CcEEEEECCCCCCHHHHHHHHhCCCCC-----------CCceEEECCEECCccCHHH---HHhCCeEEe
Confidence 578999999 889999999999999999999999876 7899999998765432111 011122222
Q ss_pred cccc---ccccchhHHHHHHhcCChHHHHHHHHHHHHHccCccccccCcccccceecccee---------eeecCCCCCC
Q 018394 88 RQVI---AVSKSSDIVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGIS---------FNSTLPLTHV 155 (356)
Q Consensus 88 ~~~~---~~~~~~d~i~~v~d~~~~~~~~~~i~~~L~~~~i~l~~~~~~lS~g~~qr~~ia---------l~~DEp~~~L 155 (356)
.|.. ..+....+ .+.+... ..||+||+||++++ +++||||++|
T Consensus 81 ~q~~~~~~~~~~~t~-----------------~e~l~~~--------~~LS~G~~qrl~la~al~~~p~llllDEP~~~L 135 (182)
T cd03215 81 PEDRKREGLVLDLSV-----------------AENIALS--------SLLSGGNQQKVVLARWLARDPRVLILDEPTRGV 135 (182)
T ss_pred cCCcccCcccCCCcH-----------------HHHHHHH--------hhcCHHHHHHHHHHHHHccCCCEEEECCCCcCC
Confidence 2221 01111100 0011000 01899999999988 9999999999
Q ss_pred CHHHHHHH---HHHhcc-cCcEEEEccCCC
Q 018394 156 DEKLCYQI---LHEYKI-HNAEVLFREDAT 181 (356)
Q Consensus 156 D~~~~~~i---l~~l~~-~~~~i~~thd~~ 181 (356)
|+.....+ +..+.. +.+++++||+.+
T Consensus 136 D~~~~~~l~~~l~~~~~~~~tiii~sh~~~ 165 (182)
T cd03215 136 DVGAKAEIYRLIRELADAGKAVLLISSELD 165 (182)
T ss_pred CHHHHHHHHHHHHHHHHCCCEEEEEeCCHH
Confidence 99885544 444433 459999999964
No 344
>PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=99.76 E-value=3.1e-18 Score=176.17 Aligned_cols=170 Identities=16% Similarity=0.140 Sum_probs=116.7
Q ss_pred CCCCeEEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCccccccccccccceEEEECCEeecccCccccccccccCcccc
Q 018394 8 AGEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRG 87 (356)
Q Consensus 8 ~~~s~~v~~~~g~~v~LvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~~D~pGl~~~~~~~~~~~ 87 (356)
+++||++++ |+.++|+|+||||||||+++|+|...| .+|.+.++|.++.-++...++ ..++..
T Consensus 332 ~~i~~~i~~--G~~~~ivG~sGsGKSTLl~ll~g~~~p-----------~~G~i~~~g~~~~~~~~~~~~----~~i~~v 394 (569)
T PRK10789 332 ENVNFTLKP--GQMLGICGPTGSGKSTLLSLIQRHFDV-----------SEGDIRFHDIPLTKLQLDSWR----SRLAVV 394 (569)
T ss_pred cCeeEEECC--CCEEEEECCCCCCHHHHHHHHhcccCC-----------CCCEEEECCEEHhhCCHHHHH----hheEEE
Confidence 689999999 889999999999999999999999876 899999999988655543322 223444
Q ss_pred ccccccccc--hhHHHHHHhcCChHHHHHHHHHHHHHccC-------------ccccccCcccccceecccee-------
Q 018394 88 RQVIAVSKS--SDIVLMVLDASKSEGHRQILTKELEAVGL-------------RLNKRPPQIYFKKKKTGGIS------- 145 (356)
Q Consensus 88 ~~~~~~~~~--~d~i~~v~d~~~~~~~~~~i~~~L~~~~i-------------~l~~~~~~lS~g~~qr~~ia------- 145 (356)
.|....+.. .+++.+.. +....+.+.+.++..++ .+......||+||+||+++|
T Consensus 395 ~q~~~lf~~ti~~Ni~~~~----~~~~~~~~~~~~~~~~l~~~i~~lp~gl~t~~~~~g~~LSgGq~qRi~lARall~~~ 470 (569)
T PRK10789 395 SQTPFLFSDTVANNIALGR----PDATQQEIEHVARLASVHDDILRLPQGYDTEVGERGVMLSGGQKQRISIARALLLNA 470 (569)
T ss_pred ccCCeeccccHHHHHhcCC----CCCCHHHHHHHHHHcCCHHHHHhCcCcccceecCCCCcCCHHHHHHHHHHHHHhcCC
Confidence 554444432 33332211 11112233444444333 23344567999999999998
Q ss_pred --eeecCCCCCCCHHHHHHHHHHh---cccCcEEEEccCCCHHHHHHHHhccccccceEEEeecCCCC
Q 018394 146 --FNSTLPLTHVDEKLCYQILHEY---KIHNAEVLFREDATVDDLIDVIEGNRKYMKCVYVYNKIDVI 208 (356)
Q Consensus 146 --l~~DEp~~~LD~~~~~~il~~l---~~~~~~i~~thd~~~~~~~~~i~~~~~~~p~i~v~NK~Dl~ 208 (356)
+++||||++||++....+++.+ ..+.|++++||+.+.... .+.++++.+..+.
T Consensus 471 ~illlDEpts~LD~~~~~~i~~~l~~~~~~~tii~itH~~~~~~~----------~d~i~~l~~G~i~ 528 (569)
T PRK10789 471 EILILDDALSAVDGRTEHQILHNLRQWGEGRTVIISAHRLSALTE----------ASEILVMQHGHIA 528 (569)
T ss_pred CEEEEECccccCCHHHHHHHHHHHHHHhCCCEEEEEecchhHHHc----------CCEEEEEeCCEEE
Confidence 9999999999999866555544 345699999999753222 3667777665443
No 345
>TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=99.76 E-value=4e-18 Score=174.48 Aligned_cols=172 Identities=14% Similarity=0.136 Sum_probs=115.4
Q ss_pred CCCCeEEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCccccccccccccceEEEECCEeecccCccccccccccCcccc
Q 018394 8 AGEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRG 87 (356)
Q Consensus 8 ~~~s~~v~~~~g~~v~LvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~~D~pGl~~~~~~~~~~~ 87 (356)
+++||++++ |+.++|+|+||||||||+++|+|...| .+|.+.++|.++..++...++ ...+..
T Consensus 335 ~~~~~~i~~--G~~~~ivG~sGsGKSTL~~ll~g~~~~-----------~~G~i~~~g~~i~~~~~~~~~----~~i~~v 397 (544)
T TIGR01842 335 RGISFRLQA--GEALAIIGPSGSGKSTLARLIVGIWPP-----------TSGSVRLDGADLKQWDRETFG----KHIGYL 397 (544)
T ss_pred ccceEEEcC--CCEEEEECCCCCCHHHHHHHHhCCCCC-----------CCceEEECCEehhhCCHHHHh----hheEEe
Confidence 689999999 889999999999999999999999876 899999999988765543322 234444
Q ss_pred ccccccccc--hhHHHHHHhcCChHHHH-----HHHHHHHHHc--cC--ccccccCcccccceecccee---------ee
Q 018394 88 RQVIAVSKS--SDIVLMVLDASKSEGHR-----QILTKELEAV--GL--RLNKRPPQIYFKKKKTGGIS---------FN 147 (356)
Q Consensus 88 ~~~~~~~~~--~d~i~~v~d~~~~~~~~-----~~i~~~L~~~--~i--~l~~~~~~lS~g~~qr~~ia---------l~ 147 (356)
.|....+.. .|++.+.-......+-. ..+.+.++.+ |+ .+......||+||+||+++| ++
T Consensus 398 ~q~~~lf~~ti~~Ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~gl~t~~~~~g~~LSgGq~qrl~lARall~~~~ili 477 (544)
T TIGR01842 398 PQDVELFPGTVAENIARFGENADPEKIIEAAKLAGVHELILRLPDGYDTVIGPGGATLSGGQRQRIALARALYGDPKLVV 477 (544)
T ss_pred cCCcccccccHHHHHhccCCCCCHHHHHHHHHHhChHHHHHhCccccccccCCCcCCCCHHHHHHHHHHHHHhcCCCEEE
Confidence 554444432 33333211101111100 0122333443 33 34556678999999999998 99
Q ss_pred ecCCCCCCCHHHHHHHHHHhc----ccCcEEEEccCCCHHHHHHHHhccccccceEEEeecCC
Q 018394 148 STLPLTHVDEKLCYQILHEYK----IHNAEVLFREDATVDDLIDVIEGNRKYMKCVYVYNKID 206 (356)
Q Consensus 148 ~DEp~~~LD~~~~~~il~~l~----~~~~~i~~thd~~~~~~~~~i~~~~~~~p~i~v~NK~D 206 (356)
+||||++||.++...+++.+. .+.+++++||+.+..+. +..++++++.-
T Consensus 478 lDEpts~LD~~~~~~i~~~l~~~~~~~~tvi~ith~~~~~~~----------~d~i~~l~~G~ 530 (544)
T TIGR01842 478 LDEPNSNLDEEGEQALANAIKALKARGITVVVITHRPSLLGC----------VDKILVLQDGR 530 (544)
T ss_pred EeCCccccCHHHHHHHHHHHHHHhhCCCEEEEEeCCHHHHHh----------CCEEEEEECCE
Confidence 999999999988665555443 34699999999754322 35677776543
No 346
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=99.76 E-value=3.2e-18 Score=175.42 Aligned_cols=152 Identities=15% Similarity=0.142 Sum_probs=104.1
Q ss_pred CCCCeEEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCccccccccccccceEEEECCEeecccCccccccccccCcccc
Q 018394 8 AGEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRG 87 (356)
Q Consensus 8 ~~~s~~v~~~~g~~v~LvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~~D~pGl~~~~~~~~~~~ 87 (356)
.++||++.+ |++++|+|+|||||||||++|+|...| ..|.|.+++. +. .|+.....
T Consensus 339 ~~isl~i~~--Ge~~~l~G~NGsGKSTLl~~l~G~~~p-----------~~G~i~~~~~-~~----i~~v~q~~------ 394 (552)
T TIGR03719 339 DDLSFKLPP--GGIVGVIGPNGAGKSTLFRMITGQEQP-----------DSGTIKIGET-VK----LAYVDQSR------ 394 (552)
T ss_pred ccceEEEcC--CCEEEEECCCCCCHHHHHHHHcCCCCC-----------CCeEEEECCc-eE----EEEEeCCc------
Confidence 579999999 889999999999999999999999866 7899988542 10 11111100
Q ss_pred ccccccccchhHHHHHHhcCChHHHHHHHHHHHHHccC---ccccccCcccccceecccee---------eeecCCCCCC
Q 018394 88 RQVIAVSKSSDIVLMVLDASKSEGHRQILTKELEAVGL---RLNKRPPQIYFKKKKTGGIS---------FNSTLPLTHV 155 (356)
Q Consensus 88 ~~~~~~~~~~d~i~~v~d~~~~~~~~~~i~~~L~~~~i---~l~~~~~~lS~g~~qr~~ia---------l~~DEp~~~L 155 (356)
..........+.+.+...............++|+.+++ ..++++..||+||+||+.+| +++||||++|
T Consensus 395 ~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGe~qrv~la~al~~~p~lllLDEPt~~L 474 (552)
T TIGR03719 395 DALDPNKTVWEEISGGLDIIQLGKREVPSRAYVGRFNFKGSDQQKKVGQLSGGERNRVHLAKTLKSGGNVLLLDEPTNDL 474 (552)
T ss_pred cccCCCCcHHHHHHhhccccccCcchHHHHHHHHhCCCChhHhcCchhhCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCC
Confidence 00001112233333322111111112235578888998 25788999999999999998 9999999999
Q ss_pred CHHHHHHHHHHhcc-cCcEEEEccCCCHH
Q 018394 156 DEKLCYQILHEYKI-HNAEVLFREDATVD 183 (356)
Q Consensus 156 D~~~~~~il~~l~~-~~~~i~~thd~~~~ 183 (356)
|+.....+++.+.. ..++|++|||....
T Consensus 475 D~~~~~~l~~~l~~~~~~viivsHd~~~~ 503 (552)
T TIGR03719 475 DVETLRALEEALLEFAGCAVVISHDRWFL 503 (552)
T ss_pred CHHHHHHHHHHHHHCCCeEEEEeCCHHHH
Confidence 99987666665553 35899999997643
No 347
>PLN03073 ABC transporter F family; Provisional
Probab=99.76 E-value=3.8e-18 Score=178.63 Aligned_cols=147 Identities=16% Similarity=0.195 Sum_probs=105.2
Q ss_pred CCCCeEEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCccccccccccccceEEEECCEeecccCccccccccccCcccc
Q 018394 8 AGEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRG 87 (356)
Q Consensus 8 ~~~s~~v~~~~g~~v~LvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~~D~pGl~~~~~~~~~~~ 87 (356)
.++||++.. |++++|+|+|||||||||++|+|...| ..|.|.+++.. ..|+.
T Consensus 526 ~~vsl~i~~--Ge~i~LvG~NGsGKSTLLk~L~Gll~p-----------~~G~I~~~~~~-----~igyv---------- 577 (718)
T PLN03073 526 KNLNFGIDL--DSRIAMVGPNGIGKSTILKLISGELQP-----------SSGTVFRSAKV-----RMAVF---------- 577 (718)
T ss_pred eccEEEEcC--CCEEEEECCCCCcHHHHHHHHhCCCCC-----------CCceEEECCce-----eEEEE----------
Confidence 578999999 889999999999999999999999876 78988876521 01111
Q ss_pred cccc-ccccchhH-HHHHHhcCChHHHHHHHHHHHHHccC---ccccccCcccccceecccee---------eeecCCCC
Q 018394 88 RQVI-AVSKSSDI-VLMVLDASKSEGHRQILTKELEAVGL---RLNKRPPQIYFKKKKTGGIS---------FNSTLPLT 153 (356)
Q Consensus 88 ~~~~-~~~~~~d~-i~~v~d~~~~~~~~~~i~~~L~~~~i---~l~~~~~~lS~g~~qr~~ia---------l~~DEp~~ 153 (356)
.|.. ..+..... ++........ ...+.+.+.|+.+++ ..++++..||+||+||++|| +++||||+
T Consensus 578 ~Q~~~~~l~~~~~~~~~~~~~~~~-~~~~~i~~~L~~~gl~~~~~~~~~~~LSgGqkqRvaLAraL~~~p~lLLLDEPT~ 656 (718)
T PLN03073 578 SQHHVDGLDLSSNPLLYMMRCFPG-VPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHILLLDEPSN 656 (718)
T ss_pred eccccccCCcchhHHHHHHHhcCC-CCHHHHHHHHHHCCCChHHhcCCccccCHHHHHHHHHHHHHhcCCCEEEEcCCCC
Confidence 1110 00111111 1111111111 123457888999998 36788999999999999988 99999999
Q ss_pred CCCHHHHHHHHHHhcc-cCcEEEEccCCCHH
Q 018394 154 HVDEKLCYQILHEYKI-HNAEVLFREDATVD 183 (356)
Q Consensus 154 ~LD~~~~~~il~~l~~-~~~~i~~thd~~~~ 183 (356)
+||+.....+++.+.. ..++|++|||....
T Consensus 657 ~LD~~s~~~l~~~L~~~~gtvIivSHd~~~i 687 (718)
T PLN03073 657 HLDLDAVEALIQGLVLFQGGVLMVSHDEHLI 687 (718)
T ss_pred CCCHHHHHHHHHHHHHcCCEEEEEECCHHHH
Confidence 9999998877777663 45999999997654
No 348
>TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein. This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins.
Probab=99.76 E-value=3.4e-18 Score=176.07 Aligned_cols=167 Identities=14% Similarity=0.084 Sum_probs=118.0
Q ss_pred CCCCeEEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCccccccccccccceEEEECCEeecccCccccccccccCcccc
Q 018394 8 AGEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRG 87 (356)
Q Consensus 8 ~~~s~~v~~~~g~~v~LvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~~D~pGl~~~~~~~~~~~ 87 (356)
++++|++++ |+.++|+|+||||||||+++|+|...| ..|.+.++|.++..++...++ ..++..
T Consensus 357 ~~inl~i~~--Ge~i~IvG~sGsGKSTLlklL~gl~~p-----------~~G~I~i~g~~i~~~~~~~~~----~~i~~~ 419 (576)
T TIGR02204 357 DGLNLTVRP--GETVALVGPSGAGKSTLFQLLLRFYDP-----------QSGRILLDGVDLRQLDPAELR----ARMALV 419 (576)
T ss_pred cceeEEecC--CCEEEEECCCCCCHHHHHHHHHhccCC-----------CCCEEEECCEEHHhcCHHHHH----HhceEE
Confidence 689999999 889999999999999999999999877 899999999998776654432 234555
Q ss_pred ccccccccc--hhHHHHHHhcCChHHHHHHHHHHHHHccC-------------ccccccCcccccceecccee-------
Q 018394 88 RQVIAVSKS--SDIVLMVLDASKSEGHRQILTKELEAVGL-------------RLNKRPPQIYFKKKKTGGIS------- 145 (356)
Q Consensus 88 ~~~~~~~~~--~d~i~~v~d~~~~~~~~~~i~~~L~~~~i-------------~l~~~~~~lS~g~~qr~~ia------- 145 (356)
.|....+.. .|++.+.- +....+.+.+.++..++ .+......||+||+||+++|
T Consensus 420 ~Q~~~lf~~Ti~~Ni~~~~----~~~~~~~~~~~l~~~~l~~~i~~l~~gl~t~i~~~g~~LSgGq~Qrl~laRal~~~~ 495 (576)
T TIGR02204 420 PQDPVLFAASVMENIRYGR----PDATDEEVEAAARAAHAHEFISALPEGYDTYLGERGVTLSGGQRQRIAIARAILKDA 495 (576)
T ss_pred ccCCccccccHHHHHhcCC----CCCCHHHHHHHHHHcCcHHHHHhCCCCCCceeCCCCCcCCHHHHHHHHHHHHHHhCC
Confidence 665555543 44443311 11112344555555443 22334457999999999998
Q ss_pred --eeecCCCCCCCHHHHHHHHH---HhcccCcEEEEccCCCHHHHHHHHhccccccceEEEeecC
Q 018394 146 --FNSTLPLTHVDEKLCYQILH---EYKIHNAEVLFREDATVDDLIDVIEGNRKYMKCVYVYNKI 205 (356)
Q Consensus 146 --l~~DEp~~~LD~~~~~~il~---~l~~~~~~i~~thd~~~~~~~~~i~~~~~~~p~i~v~NK~ 205 (356)
+++||||++||+.+...+++ .+..+.+++++||+.+.... ...+++++..
T Consensus 496 ~ililDEpts~lD~~~~~~i~~~l~~~~~~~t~IiitH~~~~~~~----------~d~vi~l~~g 550 (576)
T TIGR02204 496 PILLLDEATSALDAESEQLVQQALETLMKGRTTLIIAHRLATVLK----------ADRIVVMDQG 550 (576)
T ss_pred CeEEEeCcccccCHHHHHHHHHHHHHHhCCCEEEEEecchHHHHh----------CCEEEEEECC
Confidence 99999999999988555544 44345799999999754332 3556666544
No 349
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=99.75 E-value=4.3e-18 Score=174.65 Aligned_cols=152 Identities=14% Similarity=0.126 Sum_probs=103.8
Q ss_pred CCCCeEEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCccccccccccccceEEEECCEeecccCccccccccccCcccc
Q 018394 8 AGEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRG 87 (356)
Q Consensus 8 ~~~s~~v~~~~g~~v~LvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~~D~pGl~~~~~~~~~~~ 87 (356)
+++||+|.+ |++++|+|+|||||||||++|+|...| ..|.|.+++ ++ ..|+.....
T Consensus 341 ~~isl~i~~--Ge~~~l~G~NGsGKSTLl~~i~G~~~p-----------~~G~i~~~~-~~----~i~~v~q~~------ 396 (556)
T PRK11819 341 DDLSFSLPP--GGIVGIIGPNGAGKSTLFKMITGQEQP-----------DSGTIKIGE-TV----KLAYVDQSR------ 396 (556)
T ss_pred cceeEEEcC--CCEEEEECCCCCCHHHHHHHHhCCCCC-----------CCeEEEECC-ce----EEEEEeCch------
Confidence 689999999 889999999999999999999999876 789998854 21 112211100
Q ss_pred ccccccccchhHHHHHHhcCChHHHHHHHHHHHHHccC---ccccccCcccccceecccee---------eeecCCCCCC
Q 018394 88 RQVIAVSKSSDIVLMVLDASKSEGHRQILTKELEAVGL---RLNKRPPQIYFKKKKTGGIS---------FNSTLPLTHV 155 (356)
Q Consensus 88 ~~~~~~~~~~d~i~~v~d~~~~~~~~~~i~~~L~~~~i---~l~~~~~~lS~g~~qr~~ia---------l~~DEp~~~L 155 (356)
..+.......+.+.+.................|+.+++ ..++++..||+||+||+.++ +++||||++|
T Consensus 397 ~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~~L 476 (556)
T PRK11819 397 DALDPNKTVWEEISGGLDIIKVGNREIPSRAYVGRFNFKGGDQQKKVGVLSGGERNRLHLAKTLKQGGNVLLLDEPTNDL 476 (556)
T ss_pred hhcCCCCCHHHHHHhhcccccccccHHHHHHHHHhCCCChhHhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCC
Confidence 00001112233333322111110112234567888998 25888999999999999988 9999999999
Q ss_pred CHHHHHHHHHHhcc-cCcEEEEccCCCHH
Q 018394 156 DEKLCYQILHEYKI-HNAEVLFREDATVD 183 (356)
Q Consensus 156 D~~~~~~il~~l~~-~~~~i~~thd~~~~ 183 (356)
|+.....+.+.+.. ..++|++|||....
T Consensus 477 D~~~~~~l~~~l~~~~~tvi~vtHd~~~~ 505 (556)
T PRK11819 477 DVETLRALEEALLEFPGCAVVISHDRWFL 505 (556)
T ss_pred CHHHHHHHHHHHHhCCCeEEEEECCHHHH
Confidence 99987666655542 35899999997643
No 350
>cd03288 ABCC_SUR2 The SUR domain 2. The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=99.75 E-value=3.7e-18 Score=158.53 Aligned_cols=169 Identities=13% Similarity=0.046 Sum_probs=108.0
Q ss_pred CCCCeEEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCccccccccccccceEEEECCEeecccCccccccccccCcccc
Q 018394 8 AGEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRG 87 (356)
Q Consensus 8 ~~~s~~v~~~~g~~v~LvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~~D~pGl~~~~~~~~~~~ 87 (356)
++++|++.+ |+.++|+|+|||||||||++|+|...+ ..|.+.++|.++.-.+..-+ ...+++.
T Consensus 38 ~~isl~i~~--Ge~~~i~G~nGsGKSTLl~~l~Gl~~~-----------~~G~i~i~g~~i~~~~~~~~----~~~i~~v 100 (257)
T cd03288 38 KHVKAYIKP--GQKVGICGRTGSGKSSLSLAFFRMVDI-----------FDGKIVIDGIDISKLPLHTL----RSRLSII 100 (257)
T ss_pred eEEEEEEcC--CCEEEEECCCCCCHHHHHHHHHcccCC-----------CCCeEEECCEEhhhCCHHHH----hhhEEEE
Confidence 578999999 889999999999999999999999866 78999999987653322111 1223333
Q ss_pred ccccccccchhHHHHHHhcCCh--HHH-HH-----HHHHHHHHc--cC--ccccccCcccccceecccee---------e
Q 018394 88 RQVIAVSKSSDIVLMVLDASKS--EGH-RQ-----ILTKELEAV--GL--RLNKRPPQIYFKKKKTGGIS---------F 146 (356)
Q Consensus 88 ~~~~~~~~~~d~i~~v~d~~~~--~~~-~~-----~i~~~L~~~--~i--~l~~~~~~lS~g~~qr~~ia---------l 146 (356)
.|....+.. .+. ..+..... ... .+ .+.+.++.+ ++ .+......||+|++||++++ +
T Consensus 101 ~q~~~l~~~-tv~-~nl~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~ll 178 (257)
T cd03288 101 LQDPILFSG-SIR-FNLDPECKCTDDRLWEALEIAQLKNMVKSLPGGLDAVVTEGGENFSVGQRQLFCLARAFVRKSSIL 178 (257)
T ss_pred CCCCccccc-HHH-HhcCcCCCCCHHHHHHHHHHhCcHHHHhhcccccCcEeccCCCcCCHHHHHHHHHHHHHhcCCCEE
Confidence 333222221 111 11111100 000 00 122233333 33 34556679999999999988 9
Q ss_pred eecCCCCCCCHHHHHHHHH---HhcccCcEEEEccCCCHHHHHHHHhccccccceEEEeecC
Q 018394 147 NSTLPLTHVDEKLCYQILH---EYKIHNAEVLFREDATVDDLIDVIEGNRKYMKCVYVYNKI 205 (356)
Q Consensus 147 ~~DEp~~~LD~~~~~~il~---~l~~~~~~i~~thd~~~~~~~~~i~~~~~~~p~i~v~NK~ 205 (356)
++||||++||+.....+++ .+..+.+++++||+...... +..+++++..
T Consensus 179 llDEPt~gLD~~~~~~l~~~l~~~~~~~tiii~sh~~~~~~~----------~dri~~l~~G 230 (257)
T cd03288 179 IMDEATASIDMATENILQKVVMTAFADRTVVTIAHRVSTILD----------ADLVLVLSRG 230 (257)
T ss_pred EEeCCccCCCHHHHHHHHHHHHHhcCCCEEEEEecChHHHHh----------CCEEEEEECC
Confidence 9999999999987554444 44345699999999765432 3556666654
No 351
>TIGR01194 cyc_pep_trnsptr cyclic peptide transporter. This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake.
Probab=99.75 E-value=4.7e-18 Score=174.34 Aligned_cols=166 Identities=11% Similarity=0.038 Sum_probs=115.0
Q ss_pred CCCCeEEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCccccccccccccceEEEECCEeecccCccccccccccCcccc
Q 018394 8 AGEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRG 87 (356)
Q Consensus 8 ~~~s~~v~~~~g~~v~LvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~~D~pGl~~~~~~~~~~~ 87 (356)
+++||++++ |+.++|+||||||||||+++|+|...| .+|.+.++|.++.-++...++ ...+..
T Consensus 359 ~~vs~~i~~--G~~~aivG~sGsGKSTl~~ll~g~~~p-----------~~G~i~~~g~~i~~~~~~~~~----~~i~~v 421 (555)
T TIGR01194 359 GPIDLRIAQ--GDIVFIVGENGCGKSTLAKLFCGLYIP-----------QEGEILLDGAAVSADSRDDYR----DLFSAI 421 (555)
T ss_pred ccceEEEcC--CcEEEEECCCCCCHHHHHHHHhCCCCC-----------CCcEEEECCEECCCCCHHHHH----hhCcEE
Confidence 579999999 889999999999999999999999876 899999999988655433221 122333
Q ss_pred ccccccccchhHHHHHHhcCChHHHHHHHHHHHHHccC--ccccc------cCcccccceecccee---------eeecC
Q 018394 88 RQVIAVSKSSDIVLMVLDASKSEGHRQILTKELEAVGL--RLNKR------PPQIYFKKKKTGGIS---------FNSTL 150 (356)
Q Consensus 88 ~~~~~~~~~~d~i~~v~d~~~~~~~~~~i~~~L~~~~i--~l~~~------~~~lS~g~~qr~~ia---------l~~DE 150 (356)
.|....+.. .+ .+...+....+.+.+.++.+++ .+... ...||+||+||++|| +++||
T Consensus 422 ~q~~~lf~~--ti---~~n~~~~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~~~LSgGq~qRlalaRall~~~~ililDE 496 (555)
T TIGR01194 422 FADFHLFDD--LI---GPDEGEHASLDNAQQYLQRLEIADKVKIEDGGFSTTTALSTGQQKRLALICAWLEDRPILLFDE 496 (555)
T ss_pred ccChhhhhh--hh---hcccccchhHHHHHHHHHHcCCchhhcccccccCCcccCCHHHHHHHHHHHHHHcCCCEEEEeC
Confidence 333222211 01 1111122234557778888887 33322 257999999999998 99999
Q ss_pred CCCCCCHHHHHHHHHH----hc-ccCcEEEEccCCCHHHHHHHHhccccccceEEEeecC
Q 018394 151 PLTHVDEKLCYQILHE----YK-IHNAEVLFREDATVDDLIDVIEGNRKYMKCVYVYNKI 205 (356)
Q Consensus 151 p~~~LD~~~~~~il~~----l~-~~~~~i~~thd~~~~~~~~~i~~~~~~~p~i~v~NK~ 205 (356)
||++||+++...+.+. +. .+.+++++||+.+..+. .+.++++++.
T Consensus 497 ~ts~LD~~~~~~i~~~l~~~~~~~~~tiiiisH~~~~~~~----------~d~i~~l~~G 546 (555)
T TIGR01194 497 WAADQDPAFKRFFYEELLPDLKRQGKTIIIISHDDQYFEL----------ADQIIKLAAG 546 (555)
T ss_pred CccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeccHHHHHh----------CCEEEEEECC
Confidence 9999999987665443 32 35699999998754332 3566776643
No 352
>TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=99.75 E-value=5e-18 Score=178.50 Aligned_cols=170 Identities=11% Similarity=0.113 Sum_probs=119.2
Q ss_pred CCCCeEEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCccccccccccccceEEEECCEeecccCccccccccccCcccc
Q 018394 8 AGEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRG 87 (356)
Q Consensus 8 ~~~s~~v~~~~g~~v~LvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~~D~pGl~~~~~~~~~~~ 87 (356)
+++||++++ |+.++|+|+||||||||+++|+|...| .+|.|.++|.++..+|...++ ..++..
T Consensus 474 ~~i~l~i~~--G~~vaivG~sGsGKSTL~~ll~g~~~p-----------~~G~I~idg~~i~~~~~~~~r----~~i~~v 536 (694)
T TIGR01846 474 SNLNLDIKP--GEFIGIVGPSGSGKSTLTKLLQRLYTP-----------QHGQVLVDGVDLAIADPAWLR----RQMGVV 536 (694)
T ss_pred ccceEEECC--CCEEEEECCCCCCHHHHHHHHhcCCCC-----------CCceEEECCEehhhCCHHHHH----HhCeEE
Confidence 689999999 889999999999999999999999876 899999999998877755443 234445
Q ss_pred ccccccccc--hhHHHHHHhcCChHHHHHHHHHHHHHccC-------------ccccccCcccccceecccee-------
Q 018394 88 RQVIAVSKS--SDIVLMVLDASKSEGHRQILTKELEAVGL-------------RLNKRPPQIYFKKKKTGGIS------- 145 (356)
Q Consensus 88 ~~~~~~~~~--~d~i~~v~d~~~~~~~~~~i~~~L~~~~i-------------~l~~~~~~lS~g~~qr~~ia------- 145 (356)
.|....+.. .|++.+. .+....+.+.+.++..++ .+......||+||+||+++|
T Consensus 537 ~q~~~lf~~ti~eNi~~~----~~~~~~~~i~~a~~~~~l~~~i~~lp~gl~t~i~~~g~~LSgGq~qri~lARall~~~ 612 (694)
T TIGR01846 537 LQENVLFSRSIRDNIALC----NPGAPFEHVIHAAKLAGAHDFISELPQGYNTEVGEKGANLSGGQRQRIAIARALVGNP 612 (694)
T ss_pred ccCCeehhhhHHHHHhcC----CCCCCHHHHHHHHHHcChHHHHHhCcCccCcEecCCCCCCCHHHHHHHHHHHHHHhCC
Confidence 554444432 3333221 111112233444444333 33445578999999999998
Q ss_pred --eeecCCCCCCCHHHHHHHHHHhc---ccCcEEEEccCCCHHHHHHHHhccccccceEEEeecCCCC
Q 018394 146 --FNSTLPLTHVDEKLCYQILHEYK---IHNAEVLFREDATVDDLIDVIEGNRKYMKCVYVYNKIDVI 208 (356)
Q Consensus 146 --l~~DEp~~~LD~~~~~~il~~l~---~~~~~i~~thd~~~~~~~~~i~~~~~~~p~i~v~NK~Dl~ 208 (356)
+++||||++||+.+...+++.+. .+.|++++||+.+.... .+.++++++.-+.
T Consensus 613 ~ililDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~----------~d~ii~l~~G~i~ 670 (694)
T TIGR01846 613 RILIFDEATSALDYESEALIMRNMREICRGRTVIIIAHRLSTVRA----------CDRIIVLEKGQIA 670 (694)
T ss_pred CEEEEECCCcCCCHHHHHHHHHHHHHHhCCCEEEEEeCChHHHHh----------CCEEEEEeCCEEE
Confidence 99999999999998666555444 45699999999754332 3567777665443
No 353
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=99.75 E-value=4.2e-18 Score=177.16 Aligned_cols=159 Identities=18% Similarity=0.177 Sum_probs=105.8
Q ss_pred CCCCeEEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCccccccccccccceEEEECCEe-ecccCccccccccccCccc
Q 018394 8 AGEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTK-IQLLDLPGIIEGASEGKGR 86 (356)
Q Consensus 8 ~~~s~~v~~~~g~~v~LvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~-i~~~D~pGl~~~~~~~~~~ 86 (356)
.++||++.+ |++++|+|+|||||||||++|+|...| ..|.|.+++.. +..+..... ....+.
T Consensus 20 ~~is~~i~~--Ge~v~LvG~NGsGKSTLLriiaG~~~p-----------~~G~I~~~~~~~~~~l~q~~~----~~~~~~ 82 (635)
T PRK11147 20 DNAELHIED--NERVCLVGRNGAGKSTLMKILNGEVLL-----------DDGRIIYEQDLIVARLQQDPP----RNVEGT 82 (635)
T ss_pred eCcEEEECC--CCEEEEECCCCCCHHHHHHHHcCCCCC-----------CCeEEEeCCCCEEEEeccCCC----CCCCCC
Confidence 589999999 889999999999999999999998766 78999887632 111110000 000111
Q ss_pred cccccc-----------ccc----------chhHHHHH------HhcCChHHHHHHHHHHHHHccCccccccCcccccce
Q 018394 87 GRQVIA-----------VSK----------SSDIVLMV------LDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKK 139 (356)
Q Consensus 87 ~~~~~~-----------~~~----------~~d~i~~v------~d~~~~~~~~~~i~~~L~~~~i~l~~~~~~lS~g~~ 139 (356)
..+... .+. ..+++... ++..........+.++|+.+|+..++++..||+|++
T Consensus 83 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~~~~~~LSgGek 162 (635)
T PRK11147 83 VYDFVAEGIEEQAEYLKRYHDISHLVETDPSEKNLNELAKLQEQLDHHNLWQLENRINEVLAQLGLDPDAALSSLSGGWL 162 (635)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHhCCCCCCCchhhcCHHHH
Confidence 111100 000 00111110 010111112346788899999866888999999999
Q ss_pred ecccee---------eeecCCCCCCCHHHHHHHHHHhc-ccCcEEEEccCCCHH
Q 018394 140 KTGGIS---------FNSTLPLTHVDEKLCYQILHEYK-IHNAEVLFREDATVD 183 (356)
Q Consensus 140 qr~~ia---------l~~DEp~~~LD~~~~~~il~~l~-~~~~~i~~thd~~~~ 183 (356)
||++|| +++||||++||+..+..+.+.+. ...++|++|||....
T Consensus 163 qRv~LAraL~~~P~lLLLDEPt~~LD~~~~~~L~~~L~~~~~tvlivsHd~~~l 216 (635)
T PRK11147 163 RKAALGRALVSNPDVLLLDEPTNHLDIETIEWLEGFLKTFQGSIIFISHDRSFI 216 (635)
T ss_pred HHHHHHHHHhcCCCEEEEcCCCCccCHHHHHHHHHHHHhCCCEEEEEeCCHHHH
Confidence 999998 99999999999998776666554 235999999997654
No 354
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=99.75 E-value=2.6e-18 Score=153.71 Aligned_cols=136 Identities=18% Similarity=0.073 Sum_probs=92.7
Q ss_pred CCCCeEEEecCCcEEEEEcCCCCcHHHHHHHHHcCC--CCccccccccccccceEEEECCEeecccCccccccccccCcc
Q 018394 8 AGEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTH--SEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKG 85 (356)
Q Consensus 8 ~~~s~~v~~~~g~~v~LvG~~gaGKSTLln~L~g~~--~~vs~~p~TT~~~~~G~i~~~g~~i~~~D~pGl~~~~~~~~~ 85 (356)
.++||++.+ |++++|+|+|||||||||++|+|.. .+ ..|.+.++|.++.-.+.... ....++
T Consensus 17 ~~is~~i~~--Ge~~~i~G~nGsGKStLl~~l~G~~~~~p-----------~~G~i~~~g~~~~~~~~~~~---~~~~i~ 80 (200)
T cd03217 17 KGVNLTIKK--GEVHALMGPNGSGKSTLAKTIMGHPKYEV-----------TEGEILFKGEDITDLPPEER---ARLGIF 80 (200)
T ss_pred eccceEECC--CcEEEEECCCCCCHHHHHHHHhCCCcCCC-----------CccEEEECCEECCcCCHHHH---hhCcEE
Confidence 588999999 8899999999999999999999984 33 78999999987754332110 011122
Q ss_pred ccccccccccchhHHHHHHhcCChHHHHHHHHHHHHHccCccccccCcccccceecccee---------eeecCCCCCCC
Q 018394 86 RGRQVIAVSKSSDIVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGIS---------FNSTLPLTHVD 156 (356)
Q Consensus 86 ~~~~~~~~~~~~d~i~~v~d~~~~~~~~~~i~~~L~~~~i~l~~~~~~lS~g~~qr~~ia---------l~~DEp~~~LD 156 (356)
+..|....+.... +.+.+ ...+..||+||+||+.++ +++||||++||
T Consensus 81 ~v~q~~~~~~~~~-----------------~~~~l-------~~~~~~LS~G~~qrv~laral~~~p~illlDEPt~~LD 136 (200)
T cd03217 81 LAFQYPPEIPGVK-----------------NADFL-------RYVNEGFSGGEKKRNEILQLLLLEPDLAILDEPDSGLD 136 (200)
T ss_pred EeecChhhccCcc-----------------HHHHH-------hhccccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCC
Confidence 2222211111100 11111 123358999999999988 99999999999
Q ss_pred HHHHHHH---HHHhcc-cCcEEEEccCCCHH
Q 018394 157 EKLCYQI---LHEYKI-HNAEVLFREDATVD 183 (356)
Q Consensus 157 ~~~~~~i---l~~l~~-~~~~i~~thd~~~~ 183 (356)
......+ |..+.. +.+++++||+.+..
T Consensus 137 ~~~~~~l~~~L~~~~~~~~tiii~sh~~~~~ 167 (200)
T cd03217 137 IDALRLVAEVINKLREEGKSVLIITHYQRLL 167 (200)
T ss_pred HHHHHHHHHHHHHHHHCCCEEEEEecCHHHH
Confidence 9875544 444433 45899999997643
No 355
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=99.75 E-value=1.6e-18 Score=152.20 Aligned_cols=130 Identities=20% Similarity=0.148 Sum_probs=91.3
Q ss_pred CCCCeEEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCccccccccccccceEEEECCEeecccCccccccccccCcccc
Q 018394 8 AGEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRG 87 (356)
Q Consensus 8 ~~~s~~v~~~~g~~v~LvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~~D~pGl~~~~~~~~~~~ 87 (356)
.+++|++.+ |++++|+|+||||||||+++|+|...+ ..|.+.++|.++.-. .. ......++.
T Consensus 19 ~~i~~~i~~--Ge~~~i~G~nGsGKStLl~~l~G~~~~-----------~~G~i~~~g~~~~~~-~~----~~~~~i~~~ 80 (178)
T cd03247 19 KNLSLELKQ--GEKIALLGRSGSGKSTLLQLLTGDLKP-----------QQGEITLDGVPVSDL-EK----ALSSLISVL 80 (178)
T ss_pred EEEEEEEcC--CCEEEEECCCCCCHHHHHHHHhccCCC-----------CCCEEEECCEEHHHH-HH----HHHhhEEEE
Confidence 578999999 889999999999999999999999866 789999999865321 00 011112222
Q ss_pred ccccccccchhHHHHHHhcCChHHHHHHHHHHHHHccCccccccCcccccceecccee---------eeecCCCCCCCHH
Q 018394 88 RQVIAVSKSSDIVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGIS---------FNSTLPLTHVDEK 158 (356)
Q Consensus 88 ~~~~~~~~~~d~i~~v~d~~~~~~~~~~i~~~L~~~~i~l~~~~~~lS~g~~qr~~ia---------l~~DEp~~~LD~~ 158 (356)
.|....+. . .+.+.+ +..||+||+||++++ +++||||++||+.
T Consensus 81 ~q~~~~~~----------~--------tv~~~i----------~~~LS~G~~qrv~laral~~~p~~lllDEP~~~LD~~ 132 (178)
T cd03247 81 NQRPYLFD----------T--------TLRNNL----------GRRFSGGERQRLALARILLQDAPIVLLDEPTVGLDPI 132 (178)
T ss_pred ccCCeeec----------c--------cHHHhh----------cccCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHH
Confidence 22211110 0 001101 578999999999988 9999999999998
Q ss_pred HHHHH---HHHhcccCcEEEEccCCCHH
Q 018394 159 LCYQI---LHEYKIHNAEVLFREDATVD 183 (356)
Q Consensus 159 ~~~~i---l~~l~~~~~~i~~thd~~~~ 183 (356)
....+ ++.+..+.+++++||+....
T Consensus 133 ~~~~l~~~l~~~~~~~tii~~sh~~~~~ 160 (178)
T cd03247 133 TERQLLSLIFEVLKDKTLIWITHHLTGI 160 (178)
T ss_pred HHHHHHHHHHHHcCCCEEEEEecCHHHH
Confidence 75544 44443445899999997653
No 356
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=99.75 E-value=5.3e-18 Score=176.43 Aligned_cols=152 Identities=16% Similarity=0.138 Sum_probs=103.8
Q ss_pred CCCCeEEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCccccccccccccceEEEECCEeecccCccccccccccCcccc
Q 018394 8 AGEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRG 87 (356)
Q Consensus 8 ~~~s~~v~~~~g~~v~LvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~~D~pGl~~~~~~~~~~~ 87 (356)
.+++|+|.+ |++++|+|+|||||||||++|+|...| ..|.|.+ |.++. .|+.....
T Consensus 336 ~~vsl~i~~--Ge~~~l~G~NGsGKSTLlk~l~G~~~p-----------~~G~i~~-~~~~~----i~y~~q~~------ 391 (635)
T PRK11147 336 KDFSAQVQR--GDKIALIGPNGCGKTTLLKLMLGQLQA-----------DSGRIHC-GTKLE----VAYFDQHR------ 391 (635)
T ss_pred cCcEEEEcC--CCEEEEECCCCCcHHHHHHHHhCCCCC-----------CCcEEEE-CCCcE----EEEEeCcc------
Confidence 588999999 889999999999999999999999766 7899988 43221 11111000
Q ss_pred ccccccccchhHHHHHHhcCChHHHHHHHHHHHHHccC---ccccccCcccccceecccee---------eeecCCCCCC
Q 018394 88 RQVIAVSKSSDIVLMVLDASKSEGHRQILTKELEAVGL---RLNKRPPQIYFKKKKTGGIS---------FNSTLPLTHV 155 (356)
Q Consensus 88 ~~~~~~~~~~d~i~~v~d~~~~~~~~~~i~~~L~~~~i---~l~~~~~~lS~g~~qr~~ia---------l~~DEp~~~L 155 (356)
..+.......+.+.+.............+.+.|..+++ ..++++..||+|++||+.+| +++||||++|
T Consensus 392 ~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGekqRl~la~al~~~p~lLlLDEPt~~L 471 (635)
T PRK11147 392 AELDPEKTVMDNLAEGKQEVMVNGRPRHVLGYLQDFLFHPKRAMTPVKALSGGERNRLLLARLFLKPSNLLILDEPTNDL 471 (635)
T ss_pred cccCCCCCHHHHHHhhcccccccchHHHHHHHHHhcCCCHHHHhChhhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCC
Confidence 00000111223332211111001112356778888887 36888999999999999988 9999999999
Q ss_pred CHHHHHHHHHHhcc-cCcEEEEccCCCHH
Q 018394 156 DEKLCYQILHEYKI-HNAEVLFREDATVD 183 (356)
Q Consensus 156 D~~~~~~il~~l~~-~~~~i~~thd~~~~ 183 (356)
|+.....+.+.+.. ..++|++|||....
T Consensus 472 D~~~~~~l~~~l~~~~~tvi~vSHd~~~~ 500 (635)
T PRK11147 472 DVETLELLEELLDSYQGTVLLVSHDRQFV 500 (635)
T ss_pred CHHHHHHHHHHHHhCCCeEEEEECCHHHH
Confidence 99986666555553 45899999997543
No 357
>COG4133 CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones]
Probab=99.75 E-value=5.2e-18 Score=146.19 Aligned_cols=156 Identities=16% Similarity=0.142 Sum_probs=111.9
Q ss_pred CCCCeEEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCccccccccccccceEEEECCEeeccc-CccccccccccCccc
Q 018394 8 AGEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLL-DLPGIIEGASEGKGR 86 (356)
Q Consensus 8 ~~~s~~v~~~~g~~v~LvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~~-D~pGl~~~~~~~~~~ 86 (356)
.+++|.+.. |+.+.|.||||+||||||++|+|...| ..|.|.++|.++... +++ .+ .-...|-
T Consensus 19 ~~L~f~l~~--Ge~~~i~G~NG~GKTtLLRilaGLl~p-----------~~G~v~~~~~~i~~~~~~~--~~-~l~yLGH 82 (209)
T COG4133 19 SDLSFTLNA--GEALQITGPNGAGKTTLLRILAGLLRP-----------DAGEVYWQGEPIQNVRESY--HQ-ALLYLGH 82 (209)
T ss_pred cceeEEEcC--CCEEEEECCCCCcHHHHHHHHHcccCC-----------CCCeEEecCCCCccchhhH--HH-HHHHhhc
Confidence 478999999 889999999999999999999999877 899999999877532 111 00 0001111
Q ss_pred cccccccccchhHHHHHHhcCChHHHHHHHHHHHHHccC--ccccccCcccccceecccee---------eeecCCCCCC
Q 018394 87 GRQVIAVSKSSDIVLMVLDASKSEGHRQILTKELEAVGL--RLNKRPPQIYFKKKKTGGIS---------FNSTLPLTHV 155 (356)
Q Consensus 87 ~~~~~~~~~~~d~i~~v~d~~~~~~~~~~i~~~L~~~~i--~l~~~~~~lS~g~~qr~~ia---------l~~DEp~~~L 155 (356)
.+-.-..+...+++-|.-+.... .....+.+.|+.+|+ ..+.+..+||.||++|+++| .++|||+++|
T Consensus 83 ~~giK~eLTa~ENL~F~~~~~~~-~~~~~i~~Al~~vgL~g~~dlp~~~LSAGQqRRvAlArL~ls~~pLWiLDEP~taL 161 (209)
T COG4133 83 QPGIKTELTALENLHFWQRFHGS-GNAATIWEALAQVGLAGLEDLPVGQLSAGQQRRVALARLWLSPAPLWILDEPFTAL 161 (209)
T ss_pred cccccchhhHHHHHHHHHHHhCC-CchhhHHHHHHHcCcccccccchhhcchhHHHHHHHHHHHcCCCCceeecCccccc
Confidence 11111122334555555443332 234568899999999 78899999999999999998 8999999999
Q ss_pred CHHHHHHHHHHhc----ccCcEEEEccCC
Q 018394 156 DEKLCYQILHEYK----IHNAEVLFREDA 180 (356)
Q Consensus 156 D~~~~~~il~~l~----~~~~~i~~thd~ 180 (356)
|.+.+..+-..+. .+..++.+||..
T Consensus 162 Dk~g~a~l~~l~~~H~~~GGiVllttHq~ 190 (209)
T COG4133 162 DKEGVALLTALMAAHAAQGGIVLLTTHQP 190 (209)
T ss_pred CHHHHHHHHHHHHHHhcCCCEEEEecCCc
Confidence 9998655444433 345778888874
No 358
>PRK10535 macrolide transporter ATP-binding /permease protein; Provisional
Probab=99.74 E-value=6.2e-18 Score=176.17 Aligned_cols=168 Identities=18% Similarity=0.198 Sum_probs=120.9
Q ss_pred CCCCeEEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCccccccccccccceEEEECCEeecccCccccccccccCcccc
Q 018394 8 AGEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRG 87 (356)
Q Consensus 8 ~~~s~~v~~~~g~~v~LvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~~D~pGl~~~~~~~~~~~ 87 (356)
++++|++.+ |++++|+|+||||||||+++|+|...+ ..|.+.++|.++.-.+.+.+........++.
T Consensus 25 ~~vs~~i~~--Ge~~~l~G~nGsGKSTLl~~i~Gl~~~-----------~~G~i~~~g~~i~~~~~~~~~~~~~~~i~~v 91 (648)
T PRK10535 25 KGISLDIYA--GEMVAIVGASGSGKSTLMNILGCLDKP-----------TSGTYRVAGQDVATLDADALAQLRREHFGFI 91 (648)
T ss_pred eeeEEEEcC--CCEEEEECCCCCCHHHHHHHHhcCCCC-----------CCeEEEECCEEcCcCCHHHHHHHHhccEEEE
Confidence 589999999 889999999999999999999999876 7899999998876443222111111234444
Q ss_pred ccccccccc---hhHHHHHHhc--CChHHHHHHHHHHHHHccC--ccccccCcccccceecccee---------eeecCC
Q 018394 88 RQVIAVSKS---SDIVLMVLDA--SKSEGHRQILTKELEAVGL--RLNKRPPQIYFKKKKTGGIS---------FNSTLP 151 (356)
Q Consensus 88 ~~~~~~~~~---~d~i~~v~d~--~~~~~~~~~i~~~L~~~~i--~l~~~~~~lS~g~~qr~~ia---------l~~DEp 151 (356)
.|....+.. .+.+.+.... ....+..+.+.+.++.+++ .+++.+..||+||+||+.++ +++|||
T Consensus 92 ~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~LS~Gq~qrv~LAraL~~~P~lLllDEP 171 (648)
T PRK10535 92 FQRYHLLSHLTAAQNVEVPAVYAGLERKQRLLRAQELLQRLGLEDRVEYQPSQLSGGQQQRVSIARALMNGGQVILADEP 171 (648)
T ss_pred eCCcccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCChhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEECC
Confidence 554444433 4444332221 1222334567888999998 67889999999999999998 999999
Q ss_pred CCCCCHHHHHHH---HHHhcc-cCcEEEEccCCCHHHHHHH
Q 018394 152 LTHVDEKLCYQI---LHEYKI-HNAEVLFREDATVDDLIDV 188 (356)
Q Consensus 152 ~~~LD~~~~~~i---l~~l~~-~~~~i~~thd~~~~~~~~~ 188 (356)
|++||......+ ++++.. +.+++++||+.+..+.+|.
T Consensus 172 ~~gLD~~s~~~l~~ll~~l~~~g~tilivsH~~~~~~~~d~ 212 (648)
T PRK10535 172 TGALDSHSGEEVMAILHQLRDRGHTVIIVTHDPQVAAQAER 212 (648)
T ss_pred CCCCCHHHHHHHHHHHHHHHhcCCEEEEECCCHHHHHhCCE
Confidence 999999885544 445443 4599999999876654443
No 359
>PRK00089 era GTPase Era; Reviewed
Probab=99.74 E-value=2.2e-18 Score=162.88 Aligned_cols=156 Identities=31% Similarity=0.413 Sum_probs=102.7
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcCC-CCccccccccccccceEEEECCEeecccCcccccccccc-Cccccccccccccch
Q 018394 20 GRVALIGFPSVGKSTLLTLLTGTH-SEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASE-GKGRGRQVIAVSKSS 97 (356)
Q Consensus 20 ~~v~LvG~~gaGKSTLln~L~g~~-~~vs~~p~TT~~~~~G~i~~~g~~i~~~D~pGl~~~~~~-~~~~~~~~~~~~~~~ 97 (356)
..|+|+|+||||||||+|+|+|.. +.+++.|.||++...|.+..++.++.++||||+...... +..+.......+..+
T Consensus 6 g~V~iiG~pn~GKSTLin~L~g~~~~~vs~~~~tt~~~i~~i~~~~~~qi~~iDTPG~~~~~~~l~~~~~~~~~~~~~~~ 85 (292)
T PRK00089 6 GFVAIVGRPNVGKSTLLNALVGQKISIVSPKPQTTRHRIRGIVTEDDAQIIFVDTPGIHKPKRALNRAMNKAAWSSLKDV 85 (292)
T ss_pred EEEEEECCCCCCHHHHHHHHhCCceeecCCCCCcccccEEEEEEcCCceEEEEECCCCCCchhHHHHHHHHHHHHHHhcC
Confidence 389999999999999999999987 568999999999999888777789999999998542210 000001111123344
Q ss_pred hHHHHHHhcCChHHHHHHHHHHHHHccCccccccCcccccceeccceeeeecCCCCCCCHHHHHHHHHHhcccCcEEEEc
Q 018394 98 DIVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNAEVLFR 177 (356)
Q Consensus 98 d~i~~v~d~~~~~~~~~~i~~~L~~~~i~l~~~~~~lS~g~~qr~~ial~~DEp~~~LD~~~~~~il~~l~~~~~~i~~t 177 (356)
|++++++|+...... ....++
T Consensus 86 D~il~vvd~~~~~~~----------------------------------------------~~~~i~------------- 106 (292)
T PRK00089 86 DLVLFVVDADEKIGP----------------------------------------------GDEFIL------------- 106 (292)
T ss_pred CEEEEEEeCCCCCCh----------------------------------------------hHHHHH-------------
Confidence 444444444331000 000111
Q ss_pred cCCCHHHHHHHHhccccccceEEEeecCCCC-ChhhH----HHHh---cCCCEEEeccccccchHHHHHHHHHHhC
Q 018394 178 EDATVDDLIDVIEGNRKYMKCVYVYNKIDVI-GIDDV----DKLA---RQPNSVVISCNLKLNLDRLLARMWEEMG 245 (356)
Q Consensus 178 hd~~~~~~~~~i~~~~~~~p~i~v~NK~Dl~-~~~~~----~~l~---~~~~~i~iSa~~~~~l~~L~~~i~~~l~ 245 (356)
+.+. ....|+++|+||+|+. ..+.+ +.+. ...+++++||+++.|+++|.+.+.+.+.
T Consensus 107 ---------~~l~--~~~~pvilVlNKiDl~~~~~~l~~~~~~l~~~~~~~~i~~iSA~~~~gv~~L~~~L~~~l~ 171 (292)
T PRK00089 107 ---------EKLK--KVKTPVILVLNKIDLVKDKEELLPLLEELSELMDFAEIVPISALKGDNVDELLDVIAKYLP 171 (292)
T ss_pred ---------HHHh--hcCCCEEEEEECCcCCCCHHHHHHHHHHHHhhCCCCeEEEecCCCCCCHHHHHHHHHHhCC
Confidence 1111 1135999999999998 43332 2222 2356899999999999999999988764
No 360
>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=99.74 E-value=6.4e-18 Score=151.48 Aligned_cols=146 Identities=21% Similarity=0.264 Sum_probs=94.2
Q ss_pred CCCCeEEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCccccccccccccceEEEECCEeeccc-CccccccccccCccc
Q 018394 8 AGEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLL-DLPGIIEGASEGKGR 86 (356)
Q Consensus 8 ~~~s~~v~~~~g~~v~LvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~~-D~pGl~~~~~~~~~~ 86 (356)
.++||++.+ |++++|+|+||||||||+++|+|...+ ..|.+.++| .+.++ +.|.+.
T Consensus 22 ~~~s~~i~~--G~~~~i~G~nG~GKSTLl~~i~G~~~~-----------~~G~i~~~g-~i~~~~q~~~l~--------- 78 (204)
T cd03250 22 KDINLEVPK--GELVAIVGPVGSGKSSLLSALLGELEK-----------LSGSVSVPG-SIAYVSQEPWIQ--------- 78 (204)
T ss_pred eeeeEEECC--CCEEEEECCCCCCHHHHHHHHhCcCCC-----------CCCeEEEcC-EEEEEecCchhc---------
Confidence 589999999 889999999999999999999999766 789999988 22221 111110
Q ss_pred cccccccccchhHHHHHHhcCChHHHHHH-----HHHHHHHc--cC--ccccccCcccccceecccee---------eee
Q 018394 87 GRQVIAVSKSSDIVLMVLDASKSEGHRQI-----LTKELEAV--GL--RLNKRPPQIYFKKKKTGGIS---------FNS 148 (356)
Q Consensus 87 ~~~~~~~~~~~d~i~~v~d~~~~~~~~~~-----i~~~L~~~--~i--~l~~~~~~lS~g~~qr~~ia---------l~~ 148 (356)
...-.+.+.+... .......+. +.+.+... ++ .+...+..||+|++||++++ +++
T Consensus 79 ------~~t~~enl~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~lS~G~~qrv~laral~~~p~llll 151 (204)
T cd03250 79 ------NGTIRENILFGKP-FDEERYEKVIKACALEPDLEILPDGDLTEIGEKGINLSGGQKQRISLARAVYSDADIYLL 151 (204)
T ss_pred ------cCcHHHHhccCCC-cCHHHHHHHHHHcCcHHHHHhccCcccceecCCCCcCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 0111222221100 000000000 11122222 22 34566789999999999998 999
Q ss_pred cCCCCCCCHHHHHHHHH----Hhc-ccCcEEEEccCCCHH
Q 018394 149 TLPLTHVDEKLCYQILH----EYK-IHNAEVLFREDATVD 183 (356)
Q Consensus 149 DEp~~~LD~~~~~~il~----~l~-~~~~~i~~thd~~~~ 183 (356)
||||++||+.....+++ .+. .+.+++++||+....
T Consensus 152 DEP~~~LD~~~~~~l~~~ll~~~~~~~~tvi~~sh~~~~~ 191 (204)
T cd03250 152 DDPLSAVDAHVGRHIFENCILGLLLNNKTRILVTHQLQLL 191 (204)
T ss_pred eCccccCCHHHHHHHHHHHHHHhccCCCEEEEEeCCHHHH
Confidence 99999999988665544 332 235899999997543
No 361
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.74 E-value=7.4e-18 Score=151.01 Aligned_cols=138 Identities=16% Similarity=0.066 Sum_probs=91.3
Q ss_pred CCCCeEEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCccccccccccccceEEEECCEeecccCccccccccccCcccc
Q 018394 8 AGEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRG 87 (356)
Q Consensus 8 ~~~s~~v~~~~g~~v~LvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~~D~pGl~~~~~~~~~~~ 87 (356)
.+++|++.+ |++++|+|+||||||||+++|+|...+. +|..|.+.++|.++...+ + .....+++.
T Consensus 24 ~~~s~~i~~--Ge~~~i~G~nGsGKSTLl~~l~G~~~~~--------~~~~G~i~i~g~~~~~~~-~----~~~~~i~~~ 88 (202)
T cd03233 24 KDFSGVVKP--GEMVLVLGRPGSGCSTLLKALANRTEGN--------VSVEGDIHYNGIPYKEFA-E----KYPGEIIYV 88 (202)
T ss_pred eeEEEEECC--CcEEEEECCCCCCHHHHHHHhcccCCCC--------CCcceEEEECCEECccch-h----hhcceEEEE
Confidence 478999999 8899999999999999999999997620 137899999998764321 1 111223333
Q ss_pred ccccccccc---hhHHHHHHhcCChHHHHHHHHHHHHHccCccccccCcccccceecccee---------eeecCCCCCC
Q 018394 88 RQVIAVSKS---SDIVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGIS---------FNSTLPLTHV 155 (356)
Q Consensus 88 ~~~~~~~~~---~d~i~~v~d~~~~~~~~~~i~~~L~~~~i~l~~~~~~lS~g~~qr~~ia---------l~~DEp~~~L 155 (356)
.+....+.. .+.+.+... + ..++.+..||+||+||+.++ +++||||++|
T Consensus 89 ~q~~~~~~~~tv~~~l~~~~~--------------~-----~~~~~~~~LS~Ge~qrl~laral~~~p~llllDEPt~~L 149 (202)
T cd03233 89 SEEDVHFPTLTVRETLDFALR--------------C-----KGNEFVRGISGGERKRVSIAEALVSRASVLCWDNSTRGL 149 (202)
T ss_pred ecccccCCCCcHHHHHhhhhh--------------h-----ccccchhhCCHHHHHHHHHHHHHhhCCCEEEEcCCCccC
Confidence 333222222 122211100 0 14667789999999999988 9999999999
Q ss_pred CHHHHHHH---HHHhccc--CcEEEEccC
Q 018394 156 DEKLCYQI---LHEYKIH--NAEVLFRED 179 (356)
Q Consensus 156 D~~~~~~i---l~~l~~~--~~~i~~thd 179 (356)
|+.....+ ++++... .++++++|+
T Consensus 150 D~~~~~~~~~~l~~~~~~~~~t~ii~~~h 178 (202)
T cd03233 150 DSSTALEILKCIRTMADVLKTTTFVSLYQ 178 (202)
T ss_pred CHHHHHHHHHHHHHHHHhCCCEEEEEEcC
Confidence 99875544 4444332 355555443
No 362
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=99.74 E-value=5.9e-18 Score=171.16 Aligned_cols=161 Identities=16% Similarity=0.169 Sum_probs=107.6
Q ss_pred CCCCeEEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCccccccccccccceEEEECCEeecccCccccccccccCcccc
Q 018394 8 AGEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRG 87 (356)
Q Consensus 8 ~~~s~~v~~~~g~~v~LvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~~D~pGl~~~~~~~~~~~ 87 (356)
+++||++.+ |++++|+|+||||||||+++|+|...+ +..|.+.++|.++.. ..+ . ......+++.
T Consensus 277 ~~vsl~i~~--Ge~~~i~G~NGsGKSTLl~~l~G~~~~----------~~~G~i~~~g~~~~~-~~~-~-~~~~~~i~~v 341 (490)
T PRK10938 277 HNLSWQVNP--GEHWQIVGPNGAGKSTLLSLITGDHPQ----------GYSNDLTLFGRRRGS-GET-I-WDIKKHIGYV 341 (490)
T ss_pred eeceEEEcC--CCEEEEECCCCCCHHHHHHHHcCCCCc----------ccCCeEEEecccCCC-CCC-H-HHHHhhceEE
Confidence 589999999 889999999999999999999997532 147999999975421 000 0 0011233444
Q ss_pred cccccccc----c-hhHHHHH-Hhc---C--ChHHHHHHHHHHHHHccC---ccccccCcccccceecccee--------
Q 018394 88 RQVIAVSK----S-SDIVLMV-LDA---S--KSEGHRQILTKELEAVGL---RLNKRPPQIYFKKKKTGGIS-------- 145 (356)
Q Consensus 88 ~~~~~~~~----~-~d~i~~v-~d~---~--~~~~~~~~i~~~L~~~~i---~l~~~~~~lS~g~~qr~~ia-------- 145 (356)
.|....+. . .+++... .+. . ......+.+.+.|+.+++ .+++++.+||+||+||+.+|
T Consensus 342 ~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrv~la~al~~~p~ 421 (490)
T PRK10938 342 SSSLHLDYRVSTSVRNVILSGFFDSIGIYQAVSDRQQKLAQQWLDILGIDKRTADAPFHSLSWGQQRLALIVRALVKHPT 421 (490)
T ss_pred CHHHHhhcccCCcHHHHHHhccccccccccCCCHHHHHHHHHHHHHcCCchhhccCchhhCCHHHHHHHHHHHHHhcCCC
Confidence 44321111 1 2222211 110 0 012234567888999998 35778899999999999988
Q ss_pred -eeecCCCCCCCHHHHHHHH---HHhcc-cC-cEEEEccCCCHH
Q 018394 146 -FNSTLPLTHVDEKLCYQIL---HEYKI-HN-AEVLFREDATVD 183 (356)
Q Consensus 146 -l~~DEp~~~LD~~~~~~il---~~l~~-~~-~~i~~thd~~~~ 183 (356)
+++||||++||+.....++ .++.. +. ++|++|||.+..
T Consensus 422 lllLDEPt~gLD~~~~~~l~~~L~~l~~~~~~tviivsHd~~~~ 465 (490)
T PRK10938 422 LLILDEPLQGLDPLNRQLVRRFVDVLISEGETQLLFVSHHAEDA 465 (490)
T ss_pred EEEEcCccccCCHHHHHHHHHHHHHHHhcCCcEEEEEecchhhh
Confidence 9999999999998855554 45443 33 599999998654
No 363
>COG1119 ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]
Probab=99.74 E-value=4.9e-18 Score=152.31 Aligned_cols=157 Identities=18% Similarity=0.145 Sum_probs=115.5
Q ss_pred CCCCeEEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCccccccccccccceEEEECCEeecccCc-cccccccccCccc
Q 018394 8 AGEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDL-PGIIEGASEGKGR 86 (356)
Q Consensus 8 ~~~s~~v~~~~g~~v~LvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~~D~-pGl~~~~~~~~~~ 86 (356)
++++..|++ |+..+|+|+|||||||||+.++|...| ..|.+.+.|..+--.|+ ..+++ .+|+
T Consensus 48 ~~isW~V~~--ge~W~I~G~NGsGKTTLL~ll~~~~~p-----------ssg~~~~~G~~~G~~~~~~elrk----~IG~ 110 (257)
T COG1119 48 GDLSWQVNP--GEHWAIVGPNGAGKTTLLSLLTGEHPP-----------SSGDVTLLGRRFGKGETIFELRK----RIGL 110 (257)
T ss_pred cccceeecC--CCcEEEECCCCCCHHHHHHHHhcccCC-----------CCCceeeeeeeccCCcchHHHHH----HhCc
Confidence 689999999 889999999999999999999999987 68899999988876676 43322 2333
Q ss_pred ccc-----ccccccchhHHHHHHhc-------CChHHHHHHHHHHHHHccC--ccccccCcccccceecccee-------
Q 018394 87 GRQ-----VIAVSKSSDIVLMVLDA-------SKSEGHRQILTKELEAVGL--RLNKRPPQIYFKKKKTGGIS------- 145 (356)
Q Consensus 87 ~~~-----~~~~~~~~d~i~~v~d~-------~~~~~~~~~i~~~L~~~~i--~l~~~~~~lS~g~~qr~~ia------- 145 (356)
+.. +.......|+++--..+ .-...+.+.+..+|+.+++ ..++++..||.|++||+-||
T Consensus 111 vS~~L~~~~~~~~~v~dvVlSg~~~siG~y~~~~~~~~~~~a~~lle~~g~~~la~r~~~~LS~Ge~rrvLiaRALv~~P 190 (257)
T COG1119 111 VSSELHERFRVRETVRDVVLSGFFASIGIYQEDLTAEDLAAAQWLLELLGAKHLADRPFGSLSQGEQRRVLIARALVKDP 190 (257)
T ss_pred cCHHHHhhcccccccceeeeecccccccccccCCCHHHHHHHHHHHHHcchhhhccCchhhcCHhHHHHHHHHHHHhcCC
Confidence 221 11111112333211111 1123456778899999999 78999999999999999988
Q ss_pred --eeecCCCCCCCHHHHHHHHHHhc---c---cCcEEEEccCCC
Q 018394 146 --FNSTLPLTHVDEKLCYQILHEYK---I---HNAEVLFREDAT 181 (356)
Q Consensus 146 --l~~DEp~~~LD~~~~~~il~~l~---~---~~~~i~~thd~~ 181 (356)
+++|||+++||......+++.+. . ..+++++||...
T Consensus 191 ~LLiLDEP~~GLDl~~re~ll~~l~~~~~~~~~~~ll~VtHh~e 234 (257)
T COG1119 191 ELLILDEPAQGLDLIAREQLLNRLEELAASPGAPALLFVTHHAE 234 (257)
T ss_pred CEEEecCccccCChHHHHHHHHHHHHHhcCCCCceEEEEEcchh
Confidence 99999999999988777666554 2 237899999764
No 364
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=99.74 E-value=5.2e-18 Score=189.37 Aligned_cols=178 Identities=13% Similarity=0.068 Sum_probs=127.2
Q ss_pred CCCCeEEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCc-c---------------------------------------
Q 018394 8 AGEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEA-A--------------------------------------- 47 (356)
Q Consensus 8 ~~~s~~v~~~~g~~v~LvG~~gaGKSTLln~L~g~~~~v-s--------------------------------------- 47 (356)
+++||++++ |.++||||++|||||||++.|.|...|. +
T Consensus 1185 ~~lsl~i~~--G~~vAIVG~SGsGKSTl~~LL~r~ydp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1262 (1466)
T PTZ00265 1185 KDLTFSCDS--KKTTAIVGETGSGKSTVMSLLMRFYDLKNDHHIVFKNEHTNDMTNEQDYQGDEEQNVGMKNVNEFSLTK 1262 (1466)
T ss_pred cCeeEEEcC--CCEEEEECCCCCCHHHHHHHHHHhCCCcccccccccccccccccccccccccccccccccccccccccc
Confidence 689999999 8899999999999999999999998651 0
Q ss_pred ---ccccccccccceEEEECCEeecccCccccccccccCccccccccccccc--hhHHHHHHhcCChHHHHHHHHHHHHH
Q 018394 48 ---SYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQVIAVSKS--SDIVLMVLDASKSEGHRQILTKELEA 122 (356)
Q Consensus 48 ---~~p~TT~~~~~G~i~~~g~~i~~~D~pGl~~~~~~~~~~~~~~~~~~~~--~d~i~~v~d~~~~~~~~~~i~~~L~~ 122 (356)
.-+-+|+-|..|.|.++|.++.-+++..++. .++++.|...++.. .++|.+... ....+.+.+.++.
T Consensus 1263 ~~~~~~~~~~~~~~G~I~idG~di~~~~~~~lR~----~i~~V~Qep~LF~gTIreNI~~g~~----~at~eeI~~A~k~ 1334 (1466)
T PTZ00265 1263 EGGSGEDSTVFKNSGKILLDGVDICDYNLKDLRN----LFSIVSQEPMLFNMSIYENIKFGKE----DATREDVKRACKF 1334 (1466)
T ss_pred ccccccccccCCCCCeEEECCEEHHhCCHHHHHh----hccEeCCCCccccccHHHHHhcCCC----CCCHHHHHHHHHH
Confidence 0123466678999999999998888765543 45666776665543 455544311 1122345556665
Q ss_pred ccC-------------ccccccCcccccceecccee---------eeecCCCCCCCHHHHHH---HHHHhc--ccCcEEE
Q 018394 123 VGL-------------RLNKRPPQIYFKKKKTGGIS---------FNSTLPLTHVDEKLCYQ---ILHEYK--IHNAEVL 175 (356)
Q Consensus 123 ~~i-------------~l~~~~~~lS~g~~qr~~ia---------l~~DEp~~~LD~~~~~~---il~~l~--~~~~~i~ 175 (356)
.++ .+...-..||+||+||++|| +++||||++||.++-+. .|..+. .+.|+|+
T Consensus 1335 A~l~~fI~~LP~GydT~VGe~G~~LSGGQkQRIaIARALlr~p~ILLLDEaTSaLD~~sE~~I~~~L~~~~~~~~~TvIi 1414 (1466)
T PTZ00265 1335 AAIDEFIESLPNKYDTNVGPYGKSLSGGQKQRIAIARALLREPKILLLDEATSSLDSNSEKLIEKTIVDIKDKADKTIIT 1414 (1466)
T ss_pred cCCHHHHHhCccccCCccCCCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHHHHHHHHHhccCCCEEEE
Confidence 554 12233457999999999999 99999999999987444 444442 3569999
Q ss_pred EccCCCHHHHHHHHhccccccceEEEeecC
Q 018394 176 FREDATVDDLIDVIEGNRKYMKCVYVYNKI 205 (356)
Q Consensus 176 ~thd~~~~~~~~~i~~~~~~~p~i~v~NK~ 205 (356)
++|..+... ..+.|+|+++.
T Consensus 1415 IaHRlsti~----------~aD~Ivvl~~~ 1434 (1466)
T PTZ00265 1415 IAHRIASIK----------RSDKIVVFNNP 1434 (1466)
T ss_pred EechHHHHH----------hCCEEEEEeCC
Confidence 999974432 24778888763
No 365
>TIGR00450 mnmE_trmE_thdF tRNA modification GTPase TrmE. TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer.
Probab=99.74 E-value=2.8e-18 Score=170.47 Aligned_cols=189 Identities=24% Similarity=0.297 Sum_probs=121.3
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHcCC-CCccccccccccccceEEEECCEeecccCccccccccccCccc-cccccccccc
Q 018394 19 HGRVALIGFPSVGKSTLLTLLTGTH-SEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGR-GRQVIAVSKS 96 (356)
Q Consensus 19 g~~v~LvG~~gaGKSTLln~L~g~~-~~vs~~p~TT~~~~~G~i~~~g~~i~~~D~pGl~~~~~~~~~~-~~~~~~~~~~ 96 (356)
+..|+|+|+||||||||+|+|++.. +.++++||||+|...+.+.++|.++.++||||+.......... .......++.
T Consensus 203 g~kVvIvG~~nvGKSSLiN~L~~~~~aivs~~pgtTrd~~~~~i~~~g~~v~l~DTaG~~~~~~~ie~~gi~~~~~~~~~ 282 (442)
T TIGR00450 203 GFKLAIVGSPNVGKSSLLNALLKQDRAIVSDIKGTTRDVVEGDFELNGILIKLLDTAGIREHADFVERLGIEKSFKAIKQ 282 (442)
T ss_pred CCEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCcEEEEEEEEEEECCEEEEEeeCCCcccchhHHHHHHHHHHHHHHhh
Confidence 5799999999999999999999986 5789999999999999999999999999999985421100000 0111223456
Q ss_pred hhHHHHHHhcCChHHHHHHHHHHHHHccCccccccCcccccceeccceeeeecCCCCCCCHHHHHHHHHHhcccCcEEEE
Q 018394 97 SDIVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNAEVLF 176 (356)
Q Consensus 97 ~d~i~~v~d~~~~~~~~~~i~~~L~~~~i~l~~~~~~lS~g~~qr~~ial~~DEp~~~LD~~~~~~il~~l~~~~~~i~~ 176 (356)
+|++++|+|++.+..... . ++..
T Consensus 283 aD~il~V~D~s~~~s~~~---------------------------------------------~--~l~~---------- 305 (442)
T TIGR00450 283 ADLVIYVLDASQPLTKDD---------------------------------------------F--LIID---------- 305 (442)
T ss_pred CCEEEEEEECCCCCChhH---------------------------------------------H--HHHH----------
Confidence 777777776654321110 0 1110
Q ss_pred ccCCCHHHHHHHHhccccccceEEEeecCCCCChhhHHHHhcC--CCEEEeccccccchHHHHHHHHHHhCceEEEeCCC
Q 018394 177 REDATVDDLIDVIEGNRKYMKCVYVYNKIDVIGIDDVDKLARQ--PNSVVISCNLKLNLDRLLARMWEEMGLVRVYTKPQ 254 (356)
Q Consensus 177 thd~~~~~~~~~i~~~~~~~p~i~v~NK~Dl~~~~~~~~l~~~--~~~i~iSa~~~~~l~~L~~~i~~~l~~i~~~~~~~ 254 (356)
+. ...+|+++|+||+|+... +.+.+.+. .+++.+||++ .|++++.+.+.+.+... +...
T Consensus 306 ------------~~--~~~~piIlV~NK~Dl~~~-~~~~~~~~~~~~~~~vSak~-~gI~~~~~~L~~~i~~~--~~~~- 366 (442)
T TIGR00450 306 ------------LN--KSKKPFILVLNKIDLKIN-SLEFFVSSKVLNSSNLSAKQ-LKIKALVDLLTQKINAF--YSKE- 366 (442)
T ss_pred ------------Hh--hCCCCEEEEEECccCCCc-chhhhhhhcCCceEEEEEec-CCHHHHHHHHHHHHHHH--hccc-
Confidence 00 113699999999998643 22332221 2468899998 47766666665544311 1110
Q ss_pred CCCCCCCccEEeecCCCCCCHHHHHHHHHHhH
Q 018394 255 GQQPDFTEPVVLSVDRGGCTVEDFCNHIHRSL 286 (356)
Q Consensus 255 ~~~p~~~~~~~~~~~r~g~~v~~~a~~ih~~l 286 (356)
... .+..++.+.||...++++.+++.+.+
T Consensus 367 --~~~-~~~~~~~~~r~~~~l~~a~~~l~~~~ 395 (442)
T TIGR00450 367 --RVE-LDDYLISSWQAMILLEKAIAQLQQFL 395 (442)
T ss_pred --ccc-cccceEhHHHHHHHHHHHHHHHHHHH
Confidence 010 12345667799989998888887544
No 366
>PLN03232 ABC transporter C family member; Provisional
Probab=99.74 E-value=8.1e-18 Score=188.96 Aligned_cols=179 Identities=15% Similarity=0.116 Sum_probs=126.2
Q ss_pred CCCCeEEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCccccccccccccceEEEECCEeecccCccccccccccCcccc
Q 018394 8 AGEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRG 87 (356)
Q Consensus 8 ~~~s~~v~~~~g~~v~LvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~~D~pGl~~~~~~~~~~~ 87 (356)
+++||++++ |++|||||++|||||||+++|.|...| ..|.|.++|.++.-++...++ ..++..
T Consensus 1253 ~~isl~I~~--GekvaIVG~SGSGKSTL~~lL~rl~~p-----------~~G~I~IdG~di~~i~~~~lR----~~i~iV 1315 (1495)
T PLN03232 1253 HGLSFFVSP--SEKVGVVGRTGAGKSSMLNALFRIVEL-----------EKGRIMIDDCDVAKFGLTDLR----RVLSII 1315 (1495)
T ss_pred ccceEEEcC--CCEEEEECCCCCCHHHHHHHHhCCCcC-----------CCceEEECCEEhhhCCHHHHH----hhcEEE
Confidence 789999999 889999999999999999999999866 899999999998877655443 235556
Q ss_pred ccccccccchhHHHHHHhcCChHHHHHHHHHHHHHccC-------------ccccccCcccccceecccee---------
Q 018394 88 RQVIAVSKSSDIVLMVLDASKSEGHRQILTKELEAVGL-------------RLNKRPPQIYFKKKKTGGIS--------- 145 (356)
Q Consensus 88 ~~~~~~~~~~d~i~~v~d~~~~~~~~~~i~~~L~~~~i-------------~l~~~~~~lS~g~~qr~~ia--------- 145 (356)
.|....+.. . +..-++.... ...+.+.+.|+..++ .+...-..||+||+||++||
T Consensus 1316 pQdp~LF~g-T-Ir~NL~~~~~-~sdeei~~al~~a~l~~~I~~lp~GLdt~v~e~G~~LSgGQrQrlaLARALLr~~~I 1392 (1495)
T PLN03232 1316 PQSPVLFSG-T-VRFNIDPFSE-HNDADLWEALERAHIKDVIDRNPFGLDAEVSEGGENFSVGQRQLLSLARALLRRSKI 1392 (1495)
T ss_pred CCCCeeeCc-c-HHHHcCCCCC-CCHHHHHHHHHHcCCHHHHHhCcCCCCceecCCCCCCCHHHHHHHHHHHHHHhCCCE
Confidence 666655543 1 1112232221 122345666666555 12233457999999999998
Q ss_pred eeecCCCCCCCHHHH---HHHHHHhcccCcEEEEccCCCHHHHHHHHhccccccceEEEeecCCCCChhhHHHH
Q 018394 146 FNSTLPLTHVDEKLC---YQILHEYKIHNAEVLFREDATVDDLIDVIEGNRKYMKCVYVYNKIDVIGIDDVDKL 216 (356)
Q Consensus 146 l~~DEp~~~LD~~~~---~~il~~l~~~~~~i~~thd~~~~~~~~~i~~~~~~~p~i~v~NK~Dl~~~~~~~~l 216 (356)
+++||||++||.++- .+.++....+.|+++++|+.+... ..+.|+|+++.-+......+++
T Consensus 1393 LILDEATSaLD~~Te~~Iq~~L~~~~~~~TvI~IAHRl~ti~----------~~DrIlVL~~G~ivE~Gt~~eL 1456 (1495)
T PLN03232 1393 LVLDEATASVDVRTDSLIQRTIREEFKSCTMLVIAHRLNTII----------DCDKILVLSSGQVLEYDSPQEL 1456 (1495)
T ss_pred EEEECCcccCCHHHHHHHHHHHHHHcCCCEEEEEeCCHHHHH----------hCCEEEEEECCEEEEECCHHHH
Confidence 999999999999874 444554445679999999974322 2478889887755433333444
No 367
>PRK13409 putative ATPase RIL; Provisional
Probab=99.73 E-value=7e-18 Score=173.46 Aligned_cols=154 Identities=16% Similarity=0.166 Sum_probs=104.0
Q ss_pred CCCCeEEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCccccccccccccceEEE-----------ECCEeecccCcccc
Q 018394 8 AGEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIH-----------YNDTKIQLLDLPGI 76 (356)
Q Consensus 8 ~~~s~~v~~~~g~~v~LvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~-----------~~g~~i~~~D~pGl 76 (356)
.+++ .+.+ |+++||+|+|||||||||++|+|...| +.|.+. ++|.+++-... .+
T Consensus 91 ~~l~-~i~~--Gev~gLvG~NGaGKSTLlkiL~G~l~p-----------~~G~i~~~~~~~~~~~~~~G~~l~~~~~-~~ 155 (590)
T PRK13409 91 YGLP-IPKE--GKVTGILGPNGIGKTTAVKILSGELIP-----------NLGDYEEEPSWDEVLKRFRGTELQNYFK-KL 155 (590)
T ss_pred ecCC-cCCC--CCEEEEECCCCCCHHHHHHHHhCCccC-----------CCccccCCCcHHHHHHHhCChHHHHHHH-HH
Confidence 5677 6666 789999999999999999999999876 788886 67766532110 00
Q ss_pred ccccccCcccccccccccc------chhHHHHHHhcCChHHHHHHHHHHHHHccC--ccccccCcccccceecccee---
Q 018394 77 IEGASEGKGRGRQVIAVSK------SSDIVLMVLDASKSEGHRQILTKELEAVGL--RLNKRPPQIYFKKKKTGGIS--- 145 (356)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~------~~d~i~~v~d~~~~~~~~~~i~~~L~~~~i--~l~~~~~~lS~g~~qr~~ia--- 145 (356)
.. .........|...... ..+++. .....+.+.++|+.+++ .+++.+.+||+||+||++||
T Consensus 156 ~~-~~~~~~~~~q~~~~~p~~~~~tv~e~l~-------~~~~~~~~~~~l~~l~l~~~~~~~~~~LSgGe~qrv~ia~al 227 (590)
T PRK13409 156 YN-GEIKVVHKPQYVDLIPKVFKGKVRELLK-------KVDERGKLDEVVERLGLENILDRDISELSGGELQRVAIAAAL 227 (590)
T ss_pred hc-cCcceeecccchhhhhhhhcchHHHHHH-------hhhHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHH
Confidence 00 0000111112111111 111111 11223467888999999 67899999999999999998
Q ss_pred ------eeecCCCCCCCHHHHHHH---HHHhcccCcEEEEccCCCHHH
Q 018394 146 ------FNSTLPLTHVDEKLCYQI---LHEYKIHNAEVLFREDATVDD 184 (356)
Q Consensus 146 ------l~~DEp~~~LD~~~~~~i---l~~l~~~~~~i~~thd~~~~~ 184 (356)
+++||||++||+.....+ ++.+..+.++|+++||.+..+
T Consensus 228 ~~~p~lllLDEPts~LD~~~~~~l~~~i~~l~~g~tvIivsHd~~~l~ 275 (590)
T PRK13409 228 LRDADFYFFDEPTSYLDIRQRLNVARLIRELAEGKYVLVVEHDLAVLD 275 (590)
T ss_pred hcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHH
Confidence 999999999999985544 444434568999999976543
No 368
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=99.73 E-value=1.2e-17 Score=146.25 Aligned_cols=122 Identities=18% Similarity=0.159 Sum_probs=88.3
Q ss_pred CCCCeEEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCccccccccccccceEEEECCEeecccCccccccccccCcccc
Q 018394 8 AGEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRG 87 (356)
Q Consensus 8 ~~~s~~v~~~~g~~v~LvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~~D~pGl~~~~~~~~~~~ 87 (356)
.++||++.+ |++++|+|||||||||||+++.+ ..|.+.+++.. ... ..
T Consensus 12 ~~isl~i~~--G~~~~l~G~nG~GKSTLl~~il~---------------~~G~v~~~~~~-~~~--------~~------ 59 (176)
T cd03238 12 QNLDVSIPL--NVLVVVTGVSGSGKSTLVNEGLY---------------ASGKARLISFL-PKF--------SR------ 59 (176)
T ss_pred cceEEEEcC--CCEEEEECCCCCCHHHHHHHHhh---------------cCCcEEECCcc-ccc--------cc------
Confidence 588999999 88999999999999999999853 25666665431 100 00
Q ss_pred ccccccccchhHHHHHHhcCChHHHHHHHHHHHHHccC---ccccccCcccccceecccee-----------eeecCCCC
Q 018394 88 RQVIAVSKSSDIVLMVLDASKSEGHRQILTKELEAVGL---RLNKRPPQIYFKKKKTGGIS-----------FNSTLPLT 153 (356)
Q Consensus 88 ~~~~~~~~~~d~i~~v~d~~~~~~~~~~i~~~L~~~~i---~l~~~~~~lS~g~~qr~~ia-----------l~~DEp~~ 153 (356)
..... +.+ .+.|+.+++ .+++++..||+|++||++++ +++||||+
T Consensus 60 ~~~~~-~~q--------------------~~~l~~~~L~~~~~~~~~~~LSgGq~qrl~laral~~~~~p~llLlDEPt~ 118 (176)
T cd03238 60 NKLIF-IDQ--------------------LQFLIDVGLGYLTLGQKLSTLSGGELQRVKLASELFSEPPGTLFILDEPST 118 (176)
T ss_pred ccEEE-EhH--------------------HHHHHHcCCCccccCCCcCcCCHHHHHHHHHHHHHhhCCCCCEEEEeCCcc
Confidence 00100 000 346777777 26888999999999999887 88999999
Q ss_pred CCCHHHHHHHHH---Hhc-ccCcEEEEccCCCH
Q 018394 154 HVDEKLCYQILH---EYK-IHNAEVLFREDATV 182 (356)
Q Consensus 154 ~LD~~~~~~il~---~l~-~~~~~i~~thd~~~ 182 (356)
+||+.....+++ .+. .+.+++++||+.+.
T Consensus 119 ~LD~~~~~~l~~~l~~~~~~g~tvIivSH~~~~ 151 (176)
T cd03238 119 GLHQQDINQLLEVIKGLIDLGNTVILIEHNLDV 151 (176)
T ss_pred cCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHH
Confidence 999998665544 433 24699999999754
No 369
>cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans. NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins.
Probab=99.73 E-value=9.1e-18 Score=144.82 Aligned_cols=57 Identities=37% Similarity=0.683 Sum_probs=53.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCccccccccccccceEEEECCEeecccCccccc
Q 018394 21 RVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGII 77 (356)
Q Consensus 21 ~v~LvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~~D~pGl~ 77 (356)
.|+|+|++|||||||+|+|++....++++||+|.++..+.+.+.+.++.++||||..
T Consensus 2 ~i~~~G~~~~GKssli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~Dt~G~~ 58 (168)
T cd01897 2 TLVIAGYPNVGKSSLVNKLTRAKPEVAPYPFTTKSLFVGHFDYKYLRWQVIDTPGLL 58 (168)
T ss_pred eEEEEcCCCCCHHHHHHHHhcCCCccCCCCCcccceeEEEEccCceEEEEEECCCcC
Confidence 689999999999999999999887788899999999999988888999999999974
No 370
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=99.73 E-value=1.6e-17 Score=167.36 Aligned_cols=170 Identities=17% Similarity=0.191 Sum_probs=105.5
Q ss_pred CCCCeEEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCccccccccccccceEEEECC-EeecccC-ccccccc------
Q 018394 8 AGEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYND-TKIQLLD-LPGIIEG------ 79 (356)
Q Consensus 8 ~~~s~~v~~~~g~~v~LvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g-~~i~~~D-~pGl~~~------ 79 (356)
.+++|.+.+ |.+|||||+|||||||||++|+|...+ ..|.|...+ ..+..+. .+.....
T Consensus 20 ~~~~l~~~~--G~riGLvG~NGaGKSTLLkilaG~~~~-----------~~G~i~~~~~~~v~~l~Q~~~~~~~~tv~~~ 86 (530)
T COG0488 20 ENVSLTLNP--GERIGLVGRNGAGKSTLLKILAGELEP-----------DSGEVTRPKGLRVGYLSQEPPLDPEKTVLDY 86 (530)
T ss_pred cCCcceeCC--CCEEEEECCCCCCHHHHHHHHcCCCcC-----------CCCeEeecCCceEEEeCCCCCcCCCccHHHH
Confidence 589999999 889999999999999999999999876 788887754 2332211 0000000
Q ss_pred cccCcccccccccc-------ccc-----hhHHHHHHhcCChHHHHHHHHHHHHHccC-ccccccCcccccceecccee-
Q 018394 80 ASEGKGRGRQVIAV-------SKS-----SDIVLMVLDASKSEGHRQILTKELEAVGL-RLNKRPPQIYFKKKKTGGIS- 145 (356)
Q Consensus 80 ~~~~~~~~~~~~~~-------~~~-----~d~i~~v~d~~~~~~~~~~i~~~L~~~~i-~l~~~~~~lS~g~~qr~~ia- 145 (356)
...+.....+.... ... ++-+..............++...|..+|+ ..+++..+||||++.|+.+|
T Consensus 87 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~e~~~~~~L~gLg~~~~~~~~~~LSGG~r~Rv~LA~ 166 (530)
T COG0488 87 VIEGFGELRELLAELEEAYALLADPDDELLAELEALLEELDGWTLEARAEEALLGLGFPDEDRPVSSLSGGWRRRVALAR 166 (530)
T ss_pred HHhhhHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHhhcccchHHHHHHHHhcCCCCcccCchhhcCHHHHHHHHHHH
Confidence 00000000000000 000 00000000000111122456677777787 33889999999999999998
Q ss_pred --------eeecCCCCCCCHHHHHHHHHHhc-ccCcEEEEccCCCH-HHHHHHHh
Q 018394 146 --------FNSTLPLTHVDEKLCYQILHEYK-IHNAEVLFREDATV-DDLIDVIE 190 (356)
Q Consensus 146 --------l~~DEp~~~LD~~~~~~il~~l~-~~~~~i~~thd~~~-~~~~~~i~ 190 (356)
+++||||++||.+.+..+-..+. ..+++|++|||-.+ +.++..+.
T Consensus 167 aL~~~pDlLLLDEPTNHLD~~~i~WLe~~L~~~~gtviiVSHDR~FLd~V~t~I~ 221 (530)
T COG0488 167 ALLEEPDLLLLDEPTNHLDLESIEWLEDYLKRYPGTVIVVSHDRYFLDNVATHIL 221 (530)
T ss_pred HHhcCCCEEEEcCCCcccCHHHHHHHHHHHHhCCCcEEEEeCCHHHHHHHhhheE
Confidence 99999999999999876666664 34489999999654 45555443
No 371
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=99.73 E-value=1.1e-17 Score=148.90 Aligned_cols=132 Identities=16% Similarity=0.090 Sum_probs=90.7
Q ss_pred CCCCeEEEecCCcEEEEEcCCCCcHHHHHHHHHcCC--CCccccccccccccceEEEECCEeecccCccccccccccCcc
Q 018394 8 AGEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTH--SEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKG 85 (356)
Q Consensus 8 ~~~s~~v~~~~g~~v~LvG~~gaGKSTLln~L~g~~--~~vs~~p~TT~~~~~G~i~~~g~~i~~~D~pGl~~~~~~~~~ 85 (356)
++++|++.+ |++++|+|+||||||||+++|+|.. .+ ..|.+.++|.++... .....++
T Consensus 26 ~~~~~~i~~--Ge~~~l~G~nGsGKStLl~~i~Gl~~~~~-----------~~G~i~~~g~~~~~~-------~~~~~i~ 85 (194)
T cd03213 26 KNVSGKAKP--GELTAIMGPSGAGKSTLLNALAGRRTGLG-----------VSGEVLINGRPLDKR-------SFRKIIG 85 (194)
T ss_pred ecceEEEcC--CcEEEEECCCCCCHHHHHHHHhCCCCCCC-----------CceEEEECCEeCchH-------hhhheEE
Confidence 588999999 8899999999999999999999997 65 789999999876421 0111223
Q ss_pred ccccccccccchhHHHHHHhcCChHHHHHHHHHHHHHccCccccccCcccccceecccee---------eeecCCCCCCC
Q 018394 86 RGRQVIAVSKSSDIVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGIS---------FNSTLPLTHVD 156 (356)
Q Consensus 86 ~~~~~~~~~~~~d~i~~v~d~~~~~~~~~~i~~~L~~~~i~l~~~~~~lS~g~~qr~~ia---------l~~DEp~~~LD 156 (356)
+..+....+....+.. .+.... . ...||+||+||+.++ +++||||++||
T Consensus 86 ~~~q~~~~~~~~t~~~-------------~i~~~~-~--------~~~LS~G~~qrv~laral~~~p~illlDEP~~~LD 143 (194)
T cd03213 86 YVPQDDILHPTLTVRE-------------TLMFAA-K--------LRGLSGGERKRVSIALELVSNPSLLFLDEPTSGLD 143 (194)
T ss_pred EccCcccCCCCCcHHH-------------HHHHHH-H--------hccCCHHHHHHHHHHHHHHcCCCEEEEeCCCcCCC
Confidence 3333222111111110 000000 0 017999999999988 99999999999
Q ss_pred HHHHHHH---HHHhcc-cCcEEEEccCCC
Q 018394 157 EKLCYQI---LHEYKI-HNAEVLFREDAT 181 (356)
Q Consensus 157 ~~~~~~i---l~~l~~-~~~~i~~thd~~ 181 (356)
......+ |+++.. +.+++++||+..
T Consensus 144 ~~~~~~l~~~l~~~~~~~~tiii~sh~~~ 172 (194)
T cd03213 144 SSSALQVMSLLRRLADTGRTIICSIHQPS 172 (194)
T ss_pred HHHHHHHHHHHHHHHhCCCEEEEEecCch
Confidence 9885554 444432 459999999975
No 372
>COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=99.73 E-value=3.9e-17 Score=146.60 Aligned_cols=166 Identities=18% Similarity=0.166 Sum_probs=123.8
Q ss_pred CCCCeEEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCccccccccccccceEEEECCEeecccCccccccccccCcccc
Q 018394 8 AGEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRG 87 (356)
Q Consensus 8 ~~~s~~v~~~~g~~v~LvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~~D~pGl~~~~~~~~~~~ 87 (356)
+|+||++.+ |+.+||||+||||||||++.|+|...| ++|.+.++|.-..+++.. .|+.
T Consensus 44 ~disf~i~~--Ge~vGiiG~NGaGKSTLlkliaGi~~P-----------t~G~v~v~G~v~~li~lg---------~Gf~ 101 (249)
T COG1134 44 KDISFEIYK--GERVGIIGHNGAGKSTLLKLIAGIYKP-----------TSGKVKVTGKVAPLIELG---------AGFD 101 (249)
T ss_pred cCceEEEeC--CCEEEEECCCCCcHHHHHHHHhCccCC-----------CCceEEEcceEehhhhcc---------cCCC
Confidence 589999999 889999999999999999999999988 899999999755444421 1211
Q ss_pred ccccccccchhHHHHHHh--cCChHHHHHHHHHHHHHccC--ccccccCcccccceecccee---------eeecCCCCC
Q 018394 88 RQVIAVSKSSDIVLMVLD--ASKSEGHRQILTKELEAVGL--RLNKRPPQIYFKKKKTGGIS---------FNSTLPLTH 154 (356)
Q Consensus 88 ~~~~~~~~~~d~i~~v~d--~~~~~~~~~~i~~~L~~~~i--~l~~~~~~lS~g~~qr~~ia---------l~~DEp~~~ 154 (356)
+ .+...+++.+..- .....+-.+.+++..+...| +++.+...+|-||+-|++.+ +++||.++-
T Consensus 102 p----elTGreNi~l~~~~~G~~~~ei~~~~~eIieFaELG~fi~~PvktYSSGM~aRLaFsia~~~~pdILllDEvlav 177 (249)
T COG1134 102 P----ELTGRENIYLRGLILGLTRKEIDEKVDEIIEFAELGDFIDQPVKTYSSGMYARLAFSVATHVEPDILLLDEVLAV 177 (249)
T ss_pred c----ccchHHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHhhCchhhccHHHHHHHHHhhhhhcCCCEEEEehhhhc
Confidence 2 2344555554322 23344445566777777677 89999999999999999876 899999999
Q ss_pred CCHHHH---HHHHHHh-cccCcEEEEccCCCHHHHHHHHhccccccceEEEeecCCCC
Q 018394 155 VDEKLC---YQILHEY-KIHNAEVLFREDATVDDLIDVIEGNRKYMKCVYVYNKIDVI 208 (356)
Q Consensus 155 LD~~~~---~~il~~l-~~~~~~i~~thd~~~~~~~~~i~~~~~~~p~i~v~NK~Dl~ 208 (356)
.|+.-. .+.++++ ....++|++|||.... +.+|+.++.+.+.-+.
T Consensus 178 GD~~F~~K~~~rl~e~~~~~~tiv~VSHd~~~I---------~~~Cd~~i~l~~G~i~ 226 (249)
T COG1134 178 GDAAFQEKCLERLNELVEKNKTIVLVSHDLGAI---------KQYCDRAIWLEHGQIR 226 (249)
T ss_pred CCHHHHHHHHHHHHHHHHcCCEEEEEECCHHHH---------HHhcCeeEEEeCCEEE
Confidence 998764 3445555 3456999999997543 2357888888887544
No 373
>PLN03130 ABC transporter C family member; Provisional
Probab=99.73 E-value=1.5e-17 Score=187.39 Aligned_cols=171 Identities=16% Similarity=0.133 Sum_probs=124.4
Q ss_pred CCCCeEEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCccccccccccccceEEEECCEeecccCccccccccccCcccc
Q 018394 8 AGEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRG 87 (356)
Q Consensus 8 ~~~s~~v~~~~g~~v~LvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~~D~pGl~~~~~~~~~~~ 87 (356)
+++||++++ |++|||||++|||||||+++|.|...+ ..|.|.++|.++.-++...++. .++.+
T Consensus 1256 ~~is~~I~~--GekVaIVGrSGSGKSTLl~lL~rl~~p-----------~~G~I~IDG~dI~~i~l~~LR~----~IsiV 1318 (1622)
T PLN03130 1256 HGLSFEISP--SEKVGIVGRTGAGKSSMLNALFRIVEL-----------ERGRILIDGCDISKFGLMDLRK----VLGII 1318 (1622)
T ss_pred cceeEEEcC--CCEEEEECCCCCCHHHHHHHHhCcCCC-----------CCceEEECCEecccCCHHHHHh----ccEEE
Confidence 789999999 889999999999999999999999866 8999999999998776655432 35566
Q ss_pred ccccccccchhHHHHHHhcCChHHHHHHHHHHHHHccC--c-----------cccccCcccccceecccee---------
Q 018394 88 RQVIAVSKSSDIVLMVLDASKSEGHRQILTKELEAVGL--R-----------LNKRPPQIYFKKKKTGGIS--------- 145 (356)
Q Consensus 88 ~~~~~~~~~~d~i~~v~d~~~~~~~~~~i~~~L~~~~i--~-----------l~~~~~~lS~g~~qr~~ia--------- 145 (356)
.|....+.. . |..-++.... ...+.+.+.|+..++ . +...-..||+||+||++||
T Consensus 1319 pQdp~LF~G-T-IreNLd~~~~-~tdeei~~Al~~a~l~~~I~~lp~GLdt~Vge~G~nLSgGQrQrlaLARALLr~p~I 1395 (1622)
T PLN03130 1319 PQAPVLFSG-T-VRFNLDPFNE-HNDADLWESLERAHLKDVIRRNSLGLDAEVSEAGENFSVGQRQLLSLARALLRRSKI 1395 (1622)
T ss_pred CCCCccccc-c-HHHHhCcCCC-CCHHHHHHHHHHcCcHHHHHhCccccCccccCCCCCCCHHHHHHHHHHHHHHcCCCE
Confidence 666655543 1 1122232221 123346666666655 2 2223358999999999998
Q ss_pred eeecCCCCCCCHHH---HHHHHHHhcccCcEEEEccCCCHHHHHHHHhccccccceEEEeecCCCC
Q 018394 146 FNSTLPLTHVDEKL---CYQILHEYKIHNAEVLFREDATVDDLIDVIEGNRKYMKCVYVYNKIDVI 208 (356)
Q Consensus 146 l~~DEp~~~LD~~~---~~~il~~l~~~~~~i~~thd~~~~~~~~~i~~~~~~~p~i~v~NK~Dl~ 208 (356)
+++||||++||.++ +.+.++....+.|+++++|+.+... ..+.|+|+.+.-+.
T Consensus 1396 LILDEATSaLD~~Te~~Iq~~I~~~~~~~TvI~IAHRL~tI~----------~~DrIlVLd~G~Iv 1451 (1622)
T PLN03130 1396 LVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTII----------DCDRILVLDAGRVV 1451 (1622)
T ss_pred EEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEEeCChHHHH----------hCCEEEEEECCEEE
Confidence 99999999999987 4555555545679999999975432 24778888876554
No 374
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.73 E-value=1.1e-17 Score=148.72 Aligned_cols=130 Identities=21% Similarity=0.207 Sum_probs=89.6
Q ss_pred CCCCeEEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCccccccccccccceEEEECCEeecccCccccccccccCcccc
Q 018394 8 AGEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRG 87 (356)
Q Consensus 8 ~~~s~~v~~~~g~~v~LvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~~D~pGl~~~~~~~~~~~ 87 (356)
.++||++.+ |++++|+|+||||||||+++|+|...+ .|..|++.++|.++. . ......++.
T Consensus 24 ~~vs~~i~~--Ge~~~l~G~nGsGKSTLl~~l~G~~~~---------~~~~G~i~~~g~~~~--~------~~~~~i~~~ 84 (192)
T cd03232 24 NNISGYVKP--GTLTALMGESGAGKTTLLDVLAGRKTA---------GVITGEILINGRPLD--K------NFQRSTGYV 84 (192)
T ss_pred EccEEEEeC--CcEEEEECCCCCCHHHHHHHHhCCCcC---------CCcceEEEECCEehH--H------HhhhceEEe
Confidence 588999999 889999999999999999999997531 127899999998764 1 011122222
Q ss_pred ccccccccc---hhHHHHHHhcCChHHHHHHHHHHHHHccCccccccCcccccceecccee---------eeecCCCCCC
Q 018394 88 RQVIAVSKS---SDIVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGIS---------FNSTLPLTHV 155 (356)
Q Consensus 88 ~~~~~~~~~---~d~i~~v~d~~~~~~~~~~i~~~L~~~~i~l~~~~~~lS~g~~qr~~ia---------l~~DEp~~~L 155 (356)
.|....+.. .+.+.+.. . . ..||+|++||++++ +++||||++|
T Consensus 85 ~q~~~~~~~~tv~~~l~~~~--------------~-------~----~~LSgGe~qrv~la~al~~~p~vlllDEP~~~L 139 (192)
T cd03232 85 EQQDVHSPNLTVREALRFSA--------------L-------L----RGLSVEQRKRLTIGVELAAKPSILFLDEPTSGL 139 (192)
T ss_pred cccCccccCCcHHHHHHHHH--------------H-------H----hcCCHHHhHHHHHHHHHhcCCcEEEEeCCCcCC
Confidence 332221211 12211100 0 0 17999999999988 9999999999
Q ss_pred CHHHHHHH---HHHhcc-cCcEEEEccCCC
Q 018394 156 DEKLCYQI---LHEYKI-HNAEVLFREDAT 181 (356)
Q Consensus 156 D~~~~~~i---l~~l~~-~~~~i~~thd~~ 181 (356)
|+.....+ ++++.. +.+++++||+.+
T Consensus 140 D~~~~~~l~~~l~~~~~~~~tiiivtH~~~ 169 (192)
T cd03232 140 DSQAAYNIVRFLKKLADSGQAILCTIHQPS 169 (192)
T ss_pred CHHHHHHHHHHHHHHHHcCCEEEEEEcCCh
Confidence 99885554 444433 459999999976
No 375
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=99.72 E-value=2e-17 Score=166.66 Aligned_cols=147 Identities=20% Similarity=0.247 Sum_probs=109.5
Q ss_pred CCCCeEEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCccccccccccccceEEEECC-EeecccCccccccccccCccc
Q 018394 8 AGEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYND-TKIQLLDLPGIIEGASEGKGR 86 (356)
Q Consensus 8 ~~~s~~v~~~~g~~v~LvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g-~~i~~~D~pGl~~~~~~~~~~ 86 (356)
.+++|.+.. |.+|||+||||+||||||+.|+|...+ ..|.+.+.- ..+-.+|
T Consensus 339 ~~~s~~i~~--g~riaiiG~NG~GKSTLlk~l~g~~~~-----------~~G~v~~g~~v~igyf~-------------- 391 (530)
T COG0488 339 KDLSFRIDR--GDRIAIVGPNGAGKSTLLKLLAGELGP-----------LSGTVKVGETVKIGYFD-------------- 391 (530)
T ss_pred cCceEEecC--CCEEEEECCCCCCHHHHHHHHhhhccc-----------CCceEEeCCceEEEEEE--------------
Confidence 578999999 889999999999999999999998876 588887643 2222221
Q ss_pred ccccccc-ccchhHHHHHHhcCChHHHHHHHHHHHHHccC---ccccccCcccccceecccee---------eeecCCCC
Q 018394 87 GRQVIAV-SKSSDIVLMVLDASKSEGHRQILTKELEAVGL---RLNKRPPQIYFKKKKTGGIS---------FNSTLPLT 153 (356)
Q Consensus 87 ~~~~~~~-~~~~d~i~~v~d~~~~~~~~~~i~~~L~~~~i---~l~~~~~~lS~g~~qr~~ia---------l~~DEp~~ 153 (356)
|.... ..+-.++.++.+.... .....++..|..+++ ...++...|||||+.|+.+| +++||||+
T Consensus 392 --Q~~~~l~~~~t~~d~l~~~~~~-~~e~~~r~~L~~f~F~~~~~~~~v~~LSGGEk~Rl~La~ll~~~pNvLiLDEPTN 468 (530)
T COG0488 392 --QHRDELDPDKTVLEELSEGFPD-GDEQEVRAYLGRFGFTGEDQEKPVGVLSGGEKARLLLAKLLLQPPNLLLLDEPTN 468 (530)
T ss_pred --ehhhhcCccCcHHHHHHhhCcc-ccHHHHHHHHHHcCCChHHHhCchhhcCHhHHHHHHHHHHhccCCCEEEEcCCCc
Confidence 11111 1122344444443321 124568889999998 57888999999999999988 99999999
Q ss_pred CCCHHHHHHHHHHhc-ccCcEEEEccCCCHHH
Q 018394 154 HVDEKLCYQILHEYK-IHNAEVLFREDATVDD 184 (356)
Q Consensus 154 ~LD~~~~~~il~~l~-~~~~~i~~thd~~~~~ 184 (356)
.||.+++..+-..+. ..+++|++|||-.+.+
T Consensus 469 hLDi~s~~aLe~aL~~f~Gtvl~VSHDr~Fl~ 500 (530)
T COG0488 469 HLDIESLEALEEALLDFEGTVLLVSHDRYFLD 500 (530)
T ss_pred cCCHHHHHHHHHHHHhCCCeEEEEeCCHHHHH
Confidence 999999888777776 4569999999965443
No 376
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=99.72 E-value=1.9e-17 Score=140.44 Aligned_cols=104 Identities=22% Similarity=0.245 Sum_probs=82.0
Q ss_pred CCCCeEEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCccccccccccccceEEEECCEeecccCccccccccccCcccc
Q 018394 8 AGEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRG 87 (356)
Q Consensus 8 ~~~s~~v~~~~g~~v~LvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~~D~pGl~~~~~~~~~~~ 87 (356)
.+++|++.+ |+.++|+|+||||||||+++|+|...+ .+|++.++|.. ..++.
T Consensus 17 ~~~~~~~~~--Ge~~~i~G~nGsGKStLl~~l~G~~~~-----------~~G~i~~~~~~---------------~i~~~ 68 (144)
T cd03221 17 KDISLTINP--GDRIGLVGRNGAGKSTLLKLIAGELEP-----------DEGIVTWGSTV---------------KIGYF 68 (144)
T ss_pred EeeEEEECC--CCEEEEECCCCCCHHHHHHHHcCCCCC-----------CceEEEECCeE---------------EEEEE
Confidence 578999999 889999999999999999999999866 79999998741 00111
Q ss_pred ccccccccchhHHHHHHhcCChHHHHHHHHHHHHHccCccccccCcccccceecccee---------eeecCCCCCCCHH
Q 018394 88 RQVIAVSKSSDIVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGIS---------FNSTLPLTHVDEK 158 (356)
Q Consensus 88 ~~~~~~~~~~d~i~~v~d~~~~~~~~~~i~~~L~~~~i~l~~~~~~lS~g~~qr~~ia---------l~~DEp~~~LD~~ 158 (356)
.+ ||+|++||++++ +++|||+++||..
T Consensus 69 ~~--------------------------------------------lS~G~~~rv~laral~~~p~illlDEP~~~LD~~ 104 (144)
T cd03221 69 EQ--------------------------------------------LSGGEKMRLALAKLLLENPNLLLLDEPTNHLDLE 104 (144)
T ss_pred cc--------------------------------------------CCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHH
Confidence 11 678888888877 8999999999998
Q ss_pred HHHHHHHHhcc-cCcEEEEccCCCHH
Q 018394 159 LCYQILHEYKI-HNAEVLFREDATVD 183 (356)
Q Consensus 159 ~~~~il~~l~~-~~~~i~~thd~~~~ 183 (356)
....+.+.+.. ..+++++||+.+..
T Consensus 105 ~~~~l~~~l~~~~~til~~th~~~~~ 130 (144)
T cd03221 105 SIEALEEALKEYPGTVILVSHDRYFL 130 (144)
T ss_pred HHHHHHHHHHHcCCEEEEEECCHHHH
Confidence 86666555542 45899999996543
No 377
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=99.72 E-value=1.7e-17 Score=145.44 Aligned_cols=103 Identities=14% Similarity=0.093 Sum_probs=80.3
Q ss_pred CeEEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCccccccccccccceEEEECCEeecccCccccccccccCccccccc
Q 018394 11 GFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQV 90 (356)
Q Consensus 11 s~~v~~~~g~~v~LvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~~D~pGl~~~~~~~~~~~~~~ 90 (356)
+|++.+ |++++|+|+||||||||+++|+|...+ ..|.+.++|..+..+ .|.
T Consensus 19 ~~~i~~--Ge~~~l~G~nGsGKSTLl~~l~Gl~~p-----------~~G~i~~~g~~i~~~----------------~q~ 69 (177)
T cd03222 19 LGVVKE--GEVIGIVGPNGTGKTTAVKILAGQLIP-----------NGDNDEWDGITPVYK----------------PQY 69 (177)
T ss_pred CcEECC--CCEEEEECCCCChHHHHHHHHHcCCCC-----------CCcEEEECCEEEEEE----------------ccc
Confidence 478888 789999999999999999999999876 789999988643211 110
Q ss_pred cccccchhHHHHHHhcCChHHHHHHHHHHHHHccCccccccCcccccceecccee---------eeecCCCCCCCHHHHH
Q 018394 91 IAVSKSSDIVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGIS---------FNSTLPLTHVDEKLCY 161 (356)
Q Consensus 91 ~~~~~~~d~i~~v~d~~~~~~~~~~i~~~L~~~~i~l~~~~~~lS~g~~qr~~ia---------l~~DEp~~~LD~~~~~ 161 (356)
. .||+||+||++++ +++||||++||+....
T Consensus 70 ~-----------------------------------------~LSgGq~qrv~laral~~~p~lllLDEPts~LD~~~~~ 108 (177)
T cd03222 70 I-----------------------------------------DLSGGELQRVAIAAALLRNATFYLFDEPSAYLDIEQRL 108 (177)
T ss_pred C-----------------------------------------CCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHH
Confidence 0 0789999999887 9999999999998855
Q ss_pred HH---HHHhcc-c-CcEEEEccCCCHH
Q 018394 162 QI---LHEYKI-H-NAEVLFREDATVD 183 (356)
Q Consensus 162 ~i---l~~l~~-~-~~~i~~thd~~~~ 183 (356)
.+ +.++.. . .+++++||+....
T Consensus 109 ~l~~~l~~~~~~~~~tiiivsH~~~~~ 135 (177)
T cd03222 109 NAARAIRRLSEEGKKTALVVEHDLAVL 135 (177)
T ss_pred HHHHHHHHHHHcCCCEEEEEECCHHHH
Confidence 44 444432 3 5899999997544
No 378
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.
Probab=99.72 E-value=2.6e-17 Score=185.22 Aligned_cols=171 Identities=14% Similarity=0.027 Sum_probs=123.6
Q ss_pred CCCCeEEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCccccccccccccceEEEECCEeecccCccccccccccCcccc
Q 018394 8 AGEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRG 87 (356)
Q Consensus 8 ~~~s~~v~~~~g~~v~LvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~~D~pGl~~~~~~~~~~~ 87 (356)
+++||++++ |++|||+|++|||||||+++|.|...+ ..|.|.++|.++.-++...++. .++..
T Consensus 1303 ~~is~~I~~--GekiaIVGrTGsGKSTL~~lL~rl~~~-----------~~G~I~IdG~dI~~i~~~~LR~----~i~iV 1365 (1522)
T TIGR00957 1303 RHINVTIHG--GEKVGIVGRTGAGKSSLTLGLFRINES-----------AEGEIIIDGLNIAKIGLHDLRF----KITII 1365 (1522)
T ss_pred cceeEEEcC--CCEEEEECCCCCCHHHHHHHHhcCccC-----------CCCeEEECCEEccccCHHHHHh----cCeEE
Confidence 689999999 889999999999999999999999765 8999999999998777554432 35566
Q ss_pred ccccccccchhHHHHHHhcCChHHHHHHHHHHHHHccC-------------ccccccCcccccceecccee---------
Q 018394 88 RQVIAVSKSSDIVLMVLDASKSEGHRQILTKELEAVGL-------------RLNKRPPQIYFKKKKTGGIS--------- 145 (356)
Q Consensus 88 ~~~~~~~~~~d~i~~v~d~~~~~~~~~~i~~~L~~~~i-------------~l~~~~~~lS~g~~qr~~ia--------- 145 (356)
.|....+.. -|-.-+|..+. ...+.+.+.|+..++ .+...-..||+||+||++||
T Consensus 1366 pQdp~LF~g--TIr~NLdp~~~-~sdeei~~al~~a~l~~~I~~lp~GLdt~v~e~G~~LSgGQrQrl~LARALLr~~~I 1442 (1522)
T TIGR00957 1366 PQDPVLFSG--SLRMNLDPFSQ-YSDEEVWWALELAHLKTFVSALPDKLDHECAEGGENLSVGQRQLVCLARALLRKTKI 1442 (1522)
T ss_pred CCCCcccCc--cHHHHcCcccC-CCHHHHHHHHHHcCcHHHHhhCccCCCceecCCCCcCCHHHHHHHHHHHHHHcCCCE
Confidence 666655553 12222233221 122345666666554 12223357999999999998
Q ss_pred eeecCCCCCCCHHH---HHHHHHHhcccCcEEEEccCCCHHHHHHHHhccccccceEEEeecCCCC
Q 018394 146 FNSTLPLTHVDEKL---CYQILHEYKIHNAEVLFREDATVDDLIDVIEGNRKYMKCVYVYNKIDVI 208 (356)
Q Consensus 146 l~~DEp~~~LD~~~---~~~il~~l~~~~~~i~~thd~~~~~~~~~i~~~~~~~p~i~v~NK~Dl~ 208 (356)
+++||||++||.++ +.+.++....+.|+++++|+.+... ..+.|+|+.+.-+.
T Consensus 1443 LiLDEaTSalD~~Te~~Iq~~l~~~~~~~TvI~IAHRl~ti~----------~~DrIlVld~G~Iv 1498 (1522)
T TIGR00957 1443 LVLDEATAAVDLETDNLIQSTIRTQFEDCTVLTIAHRLNTIM----------DYTRVIVLDKGEVA 1498 (1522)
T ss_pred EEEECCcccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHH----------hCCEEEEEECCEEE
Confidence 99999999999987 4455555445679999999975422 23778888876544
No 379
>cd01878 HflX HflX subfamily. A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.
Probab=99.72 E-value=1.3e-17 Score=149.19 Aligned_cols=160 Identities=28% Similarity=0.371 Sum_probs=102.5
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHcCCCCccccccccccccceEEEECCE-eecccCccccccccccCc-cccccccccccc
Q 018394 19 HGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDT-KIQLLDLPGIIEGASEGK-GRGRQVIAVSKS 96 (356)
Q Consensus 19 g~~v~LvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~-~i~~~D~pGl~~~~~~~~-~~~~~~~~~~~~ 96 (356)
-..|+|+|++|||||||+|+|++....+.+++++|+++..+.+.+.+. ++.++||||+........ .........+..
T Consensus 41 ~~~I~iiG~~g~GKStLl~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~~~~ 120 (204)
T cd01878 41 IPTVALVGYTNAGKSTLFNALTGADVYAEDQLFATLDPTTRRLRLPDGREVLLTDTVGFIRDLPHQLVEAFRSTLEEVAE 120 (204)
T ss_pred CCeEEEECCCCCCHHHHHHHHhcchhccCCccceeccceeEEEEecCCceEEEeCCCccccCCCHHHHHHHHHHHHHHhc
Confidence 469999999999999999999998777788999999999999988776 899999999753211000 000001111233
Q ss_pred hhHHHHHHhcCChHHHHHHHHHHHHHccCccccccCcccccceeccceeeeecCCCCCCCHHHHHHHHHHhcccCcEEEE
Q 018394 97 SDIVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNAEVLF 176 (356)
Q Consensus 97 ~d~i~~v~d~~~~~~~~~~i~~~L~~~~i~l~~~~~~lS~g~~qr~~ial~~DEp~~~LD~~~~~~il~~l~~~~~~i~~ 176 (356)
+|++++++|+..+.... +.....++++.+.
T Consensus 121 ~d~ii~v~D~~~~~~~~------------------------------------------~~~~~~~~l~~~~-------- 150 (204)
T cd01878 121 ADLLLHVVDASDPDYEE------------------------------------------QIETVEKVLKELG-------- 150 (204)
T ss_pred CCeEEEEEECCCCChhh------------------------------------------HHHHHHHHHHHcC--------
Confidence 44444444443321110 0011111221111
Q ss_pred ccCCCHHHHHHHHhccccccceEEEeecCCCCChhhHHHHh--cCCCEEEeccccccchHHHHHHHHHHh
Q 018394 177 REDATVDDLIDVIEGNRKYMKCVYVYNKIDVIGIDDVDKLA--RQPNSVVISCNLKLNLDRLLARMWEEM 244 (356)
Q Consensus 177 thd~~~~~~~~~i~~~~~~~p~i~v~NK~Dl~~~~~~~~l~--~~~~~i~iSa~~~~~l~~L~~~i~~~l 244 (356)
...+|+++|+||+|+.......... ...+++++||+++.|++++.+.|.+.|
T Consensus 151 ----------------~~~~~viiV~NK~Dl~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~L~~~~ 204 (204)
T cd01878 151 ----------------AEDIPMILVLNKIDLLDDEELEERLEAGRPDAVFISAKTGEGLDELLEAIEELL 204 (204)
T ss_pred ----------------cCCCCEEEEEEccccCChHHHHHHhhcCCCceEEEEcCCCCCHHHHHHHHHhhC
Confidence 1136999999999997654333222 224589999999999999999887643
No 380
>TIGR00954 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei.
Probab=99.71 E-value=1.7e-17 Score=173.06 Aligned_cols=149 Identities=13% Similarity=0.008 Sum_probs=101.2
Q ss_pred CCCCeEEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCccccccccccccceEEEECCEeecccCccccccccccCcccc
Q 018394 8 AGEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRG 87 (356)
Q Consensus 8 ~~~s~~v~~~~g~~v~LvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~~D~pGl~~~~~~~~~~~ 87 (356)
.++||++++ |+.++|+|+||||||||+++|+|...+ ..|.+.+++.. .++..
T Consensus 469 ~~isl~i~~--Ge~~~IvG~nGsGKSTLl~lL~Gl~~~-----------~~G~i~~~~~~---------------~i~~v 520 (659)
T TIGR00954 469 ESLSFEVPS--GNHLLICGPNGCGKSSLFRILGELWPV-----------YGGRLTKPAKG---------------KLFYV 520 (659)
T ss_pred ecceEEECC--CCEEEEECCCCCCHHHHHHHHhCCCCC-----------CCCeEeecCCC---------------cEEEE
Confidence 589999999 889999999999999999999999765 66887765311 11112
Q ss_pred cccccccc--chhHHHHHHh---cCChHHHHHHHHHHHHHccC--ccccc---------cCcccccceecccee------
Q 018394 88 RQVIAVSK--SSDIVLMVLD---ASKSEGHRQILTKELEAVGL--RLNKR---------PPQIYFKKKKTGGIS------ 145 (356)
Q Consensus 88 ~~~~~~~~--~~d~i~~v~d---~~~~~~~~~~i~~~L~~~~i--~l~~~---------~~~lS~g~~qr~~ia------ 145 (356)
.|....+. -.|.+.+... ...+....+.+.+.++.+++ .++++ ...||+||+||+++|
T Consensus 521 ~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~~~g~~~~~~~~~~LSgGqkQRl~iARal~~~ 600 (659)
T TIGR00954 521 PQRPYMTLGTLRDQIIYPDSSEDMKRRGLSDKDLEQILDNVQLTHILEREGGWSAVQDWMDVLSGGEKQRIAMARLFYHK 600 (659)
T ss_pred CCCCCCCCcCHHHHHhcCCChhhhhccCCCHHHHHHHHHHcCCHHHHhhcCCcccccccccCCCHHHHHHHHHHHHHHcC
Confidence 22221111 1233322110 00111123456777888887 34442 268999999999998
Q ss_pred ---eeecCCCCCCCHHHHHHHHHHhcc-cCcEEEEccCCCHHH
Q 018394 146 ---FNSTLPLTHVDEKLCYQILHEYKI-HNAEVLFREDATVDD 184 (356)
Q Consensus 146 ---l~~DEp~~~LD~~~~~~il~~l~~-~~~~i~~thd~~~~~ 184 (356)
+++||||++||++....+.+.+.. +.+++++||+.+...
T Consensus 601 p~illLDEpts~LD~~~~~~l~~~l~~~~~tvI~isH~~~~~~ 643 (659)
T TIGR00954 601 PQFAILDECTSAVSVDVEGYMYRLCREFGITLFSVSHRKSLWK 643 (659)
T ss_pred CCEEEEeCCccCCCHHHHHHHHHHHHHcCCEEEEEeCchHHHH
Confidence 999999999999987766666553 458999999987543
No 381
>PTZ00243 ABC transporter; Provisional
Probab=99.71 E-value=2.9e-17 Score=184.66 Aligned_cols=179 Identities=16% Similarity=0.113 Sum_probs=127.6
Q ss_pred CCCCeEEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCccccccccccccceEEEECCEeecccCccccccccccCcccc
Q 018394 8 AGEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRG 87 (356)
Q Consensus 8 ~~~s~~v~~~~g~~v~LvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~~D~pGl~~~~~~~~~~~ 87 (356)
+++||+|.+ |++|||||++|||||||+++|.|...+ ..|.|.++|.++.-++...++ ..++..
T Consensus 1327 ~~vsf~I~~--GekVaIVGrTGSGKSTLl~lLlrl~~p-----------~~G~I~IDG~di~~i~l~~LR----~~I~iV 1389 (1560)
T PTZ00243 1327 RGVSFRIAP--REKVGIVGRTGSGKSTLLLTFMRMVEV-----------CGGEIRVNGREIGAYGLRELR----RQFSMI 1389 (1560)
T ss_pred ecceEEECC--CCEEEEECCCCCCHHHHHHHHhCCCCC-----------CCcEEEECCEEcccCCHHHHH----hcceEE
Confidence 689999999 889999999999999999999999866 899999999999877655443 345666
Q ss_pred ccccccccchhHHHHHHhcCChHHHHHHHHHHHHHccC--cc-----------ccccCcccccceecccee---------
Q 018394 88 RQVIAVSKSSDIVLMVLDASKSEGHRQILTKELEAVGL--RL-----------NKRPPQIYFKKKKTGGIS--------- 145 (356)
Q Consensus 88 ~~~~~~~~~~d~i~~v~d~~~~~~~~~~i~~~L~~~~i--~l-----------~~~~~~lS~g~~qr~~ia--------- 145 (356)
.|....+.. . |-.-++.... ...+.+.+.|+..++ .+ ...-.+||+||+||++||
T Consensus 1390 pQdp~LF~g-T-IreNIdp~~~-~sdeeI~~Al~~a~l~~~I~~lp~Gldt~vge~G~nLSgGQrQrLaLARALL~~~~~ 1466 (1560)
T PTZ00243 1390 PQDPVLFDG-T-VRQNVDPFLE-ASSAEVWAALELVGLRERVASESEGIDSRVLEGGSNYSVGQRQLMCMARALLKKGSG 1466 (1560)
T ss_pred CCCCccccc-c-HHHHhCcccC-CCHHHHHHHHHHCCChHHHhhCcccccccccCCcCcCCHHHHHHHHHHHHHhcCCCC
Confidence 776665543 1 1111233221 223456777777766 22 122357999999999998
Q ss_pred -eeecCCCCCCCHHHH---HHHHHHhcccCcEEEEccCCCHHHHHHHHhccccccceEEEeecCCCCChhhHHHH
Q 018394 146 -FNSTLPLTHVDEKLC---YQILHEYKIHNAEVLFREDATVDDLIDVIEGNRKYMKCVYVYNKIDVIGIDDVDKL 216 (356)
Q Consensus 146 -l~~DEp~~~LD~~~~---~~il~~l~~~~~~i~~thd~~~~~~~~~i~~~~~~~p~i~v~NK~Dl~~~~~~~~l 216 (356)
+++||||++||.++- .+.++....+.|+|+++|+.+... ..+.|+|+.+.-+......+++
T Consensus 1467 ILlLDEATSaLD~~te~~Iq~~L~~~~~~~TvI~IAHRl~ti~----------~~DrIlVLd~G~VvE~Gt~~eL 1531 (1560)
T PTZ00243 1467 FILMDEATANIDPALDRQIQATVMSAFSAYTVITIAHRLHTVA----------QYDKIIVMDHGAVAEMGSPREL 1531 (1560)
T ss_pred EEEEeCCCccCCHHHHHHHHHHHHHHCCCCEEEEEeccHHHHH----------hCCEEEEEECCEEEEECCHHHH
Confidence 899999999999874 444555445679999999975332 2477888887655433333344
No 382
>cd03291 ABCC_CFTR1 The CFTR subfamily domain 1. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=99.71 E-value=3.3e-17 Score=154.07 Aligned_cols=145 Identities=13% Similarity=0.147 Sum_probs=92.9
Q ss_pred CCCCeEEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCccccccccccccceEEEECCEeecccCccccccccccCcccc
Q 018394 8 AGEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRG 87 (356)
Q Consensus 8 ~~~s~~v~~~~g~~v~LvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~~D~pGl~~~~~~~~~~~ 87 (356)
+++||++.+ |++++|+|+||||||||+++|+|...+ ..|.+.++|. +.++.
T Consensus 54 ~~vs~~i~~--Ge~~~liG~NGsGKSTLl~~I~Gl~~p-----------~~G~I~i~g~-i~yv~--------------- 104 (282)
T cd03291 54 KNINLKIEK--GEMLAITGSTGSGKTSLLMLILGELEP-----------SEGKIKHSGR-ISFSS--------------- 104 (282)
T ss_pred eeeeEEEcC--CCEEEEECCCCCCHHHHHHHHhCCCCC-----------CCcEEEECCE-EEEEe---------------
Confidence 578999999 889999999999999999999999866 7899998873 22211
Q ss_pred ccccccc--cchhHHHHHHhcCChHHHHH-----HHHHHHHHccC----ccccccCcccccceecccee---------ee
Q 018394 88 RQVIAVS--KSSDIVLMVLDASKSEGHRQ-----ILTKELEAVGL----RLNKRPPQIYFKKKKTGGIS---------FN 147 (356)
Q Consensus 88 ~~~~~~~--~~~d~i~~v~d~~~~~~~~~-----~i~~~L~~~~i----~l~~~~~~lS~g~~qr~~ia---------l~ 147 (356)
|....+ ...+.+.+... .......+ .+.+.+..+.. .+...+..||+|++||+++| ++
T Consensus 105 -q~~~l~~~tv~enl~~~~~-~~~~~~~~~l~~~~l~~~l~~~~~~~~~~~~~~~~~LSgGq~qrv~lAraL~~~p~iLi 182 (282)
T cd03291 105 -QFSWIMPGTIKENIIFGVS-YDEYRYKSVVKACQLEEDITKFPEKDNTVLGEGGITLSGGQRARISLARAVYKDADLYL 182 (282)
T ss_pred -CcccccccCHHHHhhcccc-cCHHHHHHHHHHhCCHHHHHhccccccceecCCCCcCCHHHHHHHHHHHHHhcCCCEEE
Confidence 100001 11222211100 00000000 01122222211 23344679999999999998 99
Q ss_pred ecCCCCCCCHHHHHHHHH----HhcccCcEEEEccCCCHH
Q 018394 148 STLPLTHVDEKLCYQILH----EYKIHNAEVLFREDATVD 183 (356)
Q Consensus 148 ~DEp~~~LD~~~~~~il~----~l~~~~~~i~~thd~~~~ 183 (356)
+||||++||+.....+++ .+..+.+++++||+....
T Consensus 183 LDEPt~gLD~~~~~~l~~~ll~~~~~~~tIiiisH~~~~~ 222 (282)
T cd03291 183 LDSPFGYLDVFTEKEIFESCVCKLMANKTRILVTSKMEHL 222 (282)
T ss_pred EECCCccCCHHHHHHHHHHHHHHhhCCCEEEEEeCChHHH
Confidence 999999999988665544 333456899999997653
No 383
>COG1101 PhnK ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.71 E-value=3.6e-17 Score=143.74 Aligned_cols=157 Identities=17% Similarity=0.192 Sum_probs=110.3
Q ss_pred CCCCeEEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCccccccccccccceEEEECCEeecccCccccccccccCcccc
Q 018394 8 AGEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRG 87 (356)
Q Consensus 8 ~~~s~~v~~~~g~~v~LvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~~D~pGl~~~~~~~~~~~ 87 (356)
.++++++.+ +.+|.++|-||||||||+|+|+|...+ ++|.|.++|.+++-..+.- ......++
T Consensus 23 ~~~sL~I~~--g~FvtViGsNGAGKSTlln~iaG~l~~-----------t~G~I~Idg~dVtk~~~~~----RA~~larV 85 (263)
T COG1101 23 NGLSLEIAE--GDFVTVIGSNGAGKSTLLNAIAGDLKP-----------TSGQILIDGVDVTKKSVAK----RANLLARV 85 (263)
T ss_pred hcCceeecC--CceEEEEcCCCccHHHHHHHhhCcccc-----------CCceEEECceecccCCHHH----HhhHHHHH
Confidence 489999999 789999999999999999999999877 8999999999987653221 11122333
Q ss_pred ccccc--ccc---chhHHHHH-Hhc----CC---hHHHHHHHHHHHHHccC----ccccccCcccccceecccee-----
Q 018394 88 RQVIA--VSK---SSDIVLMV-LDA----SK---SEGHRQILTKELEAVGL----RLNKRPPQIYFKKKKTGGIS----- 145 (356)
Q Consensus 88 ~~~~~--~~~---~~d~i~~v-~d~----~~---~~~~~~~i~~~L~~~~i----~l~~~~~~lS~g~~qr~~ia----- 145 (356)
+|.+. .+. -.+++++. ... .. .....+...+.|..+++ +++.+..-|||||+|-+.+.
T Consensus 86 fQdp~~gt~~~lTieENl~la~~Rg~~rgl~~~ln~~~~~~f~~~l~~l~lgLenrL~~~iglLSGGQRQalsL~MAtl~ 165 (263)
T COG1101 86 FQDPLAGTAPELTIEENLALAESRGKKRGLSSALNERRRSSFRERLARLGLGLENRLSDRIGLLSGGQRQALSLLMATLH 165 (263)
T ss_pred hcchhhCCcccccHHHHHHHHHhcCcccccchhhhHHHHHHHHHHHhhcccchhhhhcChhhhccchHHHHHHHHHHhcC
Confidence 44321 111 23333332 221 01 12233445667777766 78889999999999998765
Q ss_pred ----eeecCCCCCCCHHHHHHHHHHhc----ccC-cEEEEccCCC
Q 018394 146 ----FNSTLPLTHVDEKLCYQILHEYK----IHN-AEVLFREDAT 181 (356)
Q Consensus 146 ----l~~DEp~~~LD~~~~~~il~~l~----~~~-~~i~~thd~~ 181 (356)
+++||.|++|||.....+++.-. ..+ |.+|+||++.
T Consensus 166 ~pkiLLLDEHTAALDPkta~~vm~lT~kiV~~~klTtlMVTHnm~ 210 (263)
T COG1101 166 PPKILLLDEHTAALDPKTAEFVMELTAKIVEEHKLTTLMVTHNME 210 (263)
T ss_pred CCcEEEecchhhcCCcchHHHHHHHHHHHHHhcCCceEEEeccHH
Confidence 89999999999998666665432 233 8999999864
No 384
>COG4136 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.71 E-value=2.4e-17 Score=137.25 Aligned_cols=157 Identities=23% Similarity=0.310 Sum_probs=112.4
Q ss_pred CCCeEEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCccccccccccccceEEEECCEeecccCccccccccccCccccc
Q 018394 9 GEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGR 88 (356)
Q Consensus 9 ~~s~~v~~~~g~~v~LvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~~D~pGl~~~~~~~~~~~~ 88 (356)
++||+|.+ |+++.|+||+||||||||.-+.|...+ .|+ ..|++.++++++..+.+ ....+|+.+
T Consensus 20 ~~n~Tia~--GeivtlMGPSGcGKSTLls~~~G~La~----~F~----~~G~~~l~~~~l~~lPa------~qRq~GiLF 83 (213)
T COG4136 20 NVNFTIAK--GEIVTLMGPSGCGKSTLLSWMIGALAG----QFS----CTGELWLNEQRLDMLPA------AQRQIGILF 83 (213)
T ss_pred eeeEEecC--CcEEEEECCCCccHHHHHHHHHhhccc----Ccc----eeeEEEECCeeccccch------hhhheeeee
Confidence 68999999 889999999999999999999998864 222 67999999998876532 233445555
Q ss_pred cccccccchh---HHHHHHhcC-ChHHHHHHHHHHHHHccC--ccccccCcccccceecccee---------eeecCCCC
Q 018394 89 QVIAVSKSSD---IVLMVLDAS-KSEGHRQILTKELEAVGL--RLNKRPPQIYFKKKKTGGIS---------FNSTLPLT 153 (356)
Q Consensus 89 ~~~~~~~~~d---~i~~v~d~~-~~~~~~~~i~~~L~~~~i--~l~~~~~~lS~g~~qr~~ia---------l~~DEp~~ 153 (356)
|....+.... ++++.+.+. ........+...|++.++ ..++.|.++|+||+-|+++. +++|||++
T Consensus 84 QD~lLFphlsVg~Nl~fAlp~~~KG~aRr~~a~aAL~~~gL~g~f~~dP~tlSGGQrARvaL~R~Lla~Pk~lLLDEPFS 163 (213)
T COG4136 84 QDALLFPHLSVGQNLLFALPATLKGNARRNAANAALERSGLDGAFHQDPATLSGGQRARVALLRALLAQPKALLLDEPFS 163 (213)
T ss_pred cccccccccccccceEEecCcccccHHHHhhHHHHHHHhccchhhhcChhhcCcchHHHHHHHHHHHhCcceeeeCCchh
Confidence 5544444432 233322222 122344557788999999 78999999999999998764 89999999
Q ss_pred CCCHHHHHH----HHHHhcc-cCcEEEEccCCC
Q 018394 154 HVDEKLCYQ----ILHEYKI-HNAEVLFREDAT 181 (356)
Q Consensus 154 ~LD~~~~~~----il~~l~~-~~~~i~~thd~~ 181 (356)
.||..-..+ +..+.+. +-..+++|||..
T Consensus 164 ~LD~ALR~qfR~wVFs~~r~agiPtv~VTHD~~ 196 (213)
T COG4136 164 RLDVALRDQFRQWVFSEVRAAGIPTVQVTHDLQ 196 (213)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCeEEEecccc
Confidence 999865322 3344443 336788999864
No 385
>TIGR00955 3a01204 The Eye Pigment Precursor Transporter (EPP) Family protein.
Probab=99.70 E-value=1e-16 Score=166.29 Aligned_cols=157 Identities=15% Similarity=0.130 Sum_probs=112.0
Q ss_pred CCCCeEEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCccccccccccccceEEEECCEeecccCccccccccccCcccc
Q 018394 8 AGEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRG 87 (356)
Q Consensus 8 ~~~s~~v~~~~g~~v~LvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~~D~pGl~~~~~~~~~~~ 87 (356)
+++++.+.+ |+.++|+|||||||||||++|+|...+- ....|++.++|.++...+ .....+..
T Consensus 42 ~~vs~~i~~--Ge~~aI~G~sGsGKSTLL~~L~g~~~~~--------~~~~G~i~~~g~~~~~~~-------~~~~i~yv 104 (617)
T TIGR00955 42 KNVSGVAKP--GELLAVMGSSGAGKTTLMNALAFRSPKG--------VKGSGSVLLNGMPIDAKE-------MRAISAYV 104 (617)
T ss_pred cCCEEEEeC--CeEEEEECCCCCCHHHHHHHHhCCCCCC--------CcceeEEEECCEECCHHH-------Hhhhceee
Confidence 589999999 8899999999999999999999986441 014799999998764211 11223444
Q ss_pred ccccccc---cchhHHHHHHhcC-----ChHHHHHHHHHHHHHccC--ccccccC------cccccceecccee------
Q 018394 88 RQVIAVS---KSSDIVLMVLDAS-----KSEGHRQILTKELEAVGL--RLNKRPP------QIYFKKKKTGGIS------ 145 (356)
Q Consensus 88 ~~~~~~~---~~~d~i~~v~d~~-----~~~~~~~~i~~~L~~~~i--~l~~~~~------~lS~g~~qr~~ia------ 145 (356)
.|....+ ...+.+.+..... ...+..+.+.+.++.+++ ..+..+. .||+||+||+.||
T Consensus 105 ~Q~~~~~~~lTV~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~~LSgGqrkRvsia~aL~~~ 184 (617)
T TIGR00955 105 QQDDLFIPTLTVREHLMFQAHLRMPRRVTKKEKRERVDEVLQALGLRKCANTRIGVPGRVKGLSGGERKRLAFASELLTD 184 (617)
T ss_pred ccccccCccCcHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCchhcCcCccCCCCCCCCcCcchhhHHHHHHHHHcC
Confidence 4443333 3345555443321 122334568889999998 5566655 5999999999998
Q ss_pred ---eeecCCCCCCCHHHHHHHHHHhc---c-cCcEEEEccCCC
Q 018394 146 ---FNSTLPLTHVDEKLCYQILHEYK---I-HNAEVLFREDAT 181 (356)
Q Consensus 146 ---l~~DEp~~~LD~~~~~~il~~l~---~-~~~~i~~thd~~ 181 (356)
+++||||++||......+++.++ . +.++++++|+.+
T Consensus 185 p~vlllDEPtsgLD~~~~~~l~~~L~~l~~~g~tvi~~~hq~~ 227 (617)
T TIGR00955 185 PPLLFCDEPTSGLDSFMAYSVVQVLKGLAQKGKTIICTIHQPS 227 (617)
T ss_pred CCEEEeeCCCcchhHHHHHHHHHHHHHHHhCCCEEEEEeCCCC
Confidence 89999999999998665555443 3 468999999976
No 386
>PRK09554 feoB ferrous iron transport protein B; Reviewed
Probab=99.70 E-value=3.6e-17 Score=171.94 Aligned_cols=153 Identities=23% Similarity=0.310 Sum_probs=106.2
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcCCCCccccccccccccceEEEECCEeecccCccccccccccCc--ccccc---ccccc
Q 018394 20 GRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGK--GRGRQ---VIAVS 94 (356)
Q Consensus 20 ~~v~LvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~~D~pGl~~~~~~~~--~~~~~---~~~~~ 94 (356)
..|+|+|.||||||||||+|+|....++|+||||++...|.+.+++.++.++||||......... ....+ .....
T Consensus 4 ~~IaLvG~pNvGKSTLfN~Ltg~~~~vgn~pGvTve~k~g~~~~~~~~i~lvDtPG~ysl~~~~~~~s~~E~i~~~~l~~ 83 (772)
T PRK09554 4 LTIGLIGNPNSGKTTLFNQLTGARQRVGNWAGVTVERKEGQFSTTDHQVTLVDLPGTYSLTTISSQTSLDEQIACHYILS 83 (772)
T ss_pred eEEEEECCCCCCHHHHHHHHhCCCCccCCCCCceEeeEEEEEEcCceEEEEEECCCccccccccccccHHHHHHHHHHhc
Confidence 47999999999999999999999988999999999999999999999999999999864321100 00000 00012
Q ss_pred cchhHHHHHHhcCChHHHHHHHHHHHHHccCccccccCcccccceeccceeeeecCCCCCCCHHHHHHHHHHhcccCcEE
Q 018394 95 KSSDIVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNAEV 174 (356)
Q Consensus 95 ~~~d~i~~v~d~~~~~~~~~~i~~~L~~~~i~l~~~~~~lS~g~~qr~~ial~~DEp~~~LD~~~~~~il~~l~~~~~~i 174 (356)
..+|++++|+|+.+..+... + .
T Consensus 84 ~~aD~vI~VvDat~ler~l~-l-----------------------------------------------~---------- 105 (772)
T PRK09554 84 GDADLLINVVDASNLERNLY-L-----------------------------------------------T---------- 105 (772)
T ss_pred cCCCEEEEEecCCcchhhHH-H-----------------------------------------------H----------
Confidence 34566666666654321110 0 0
Q ss_pred EEccCCCHHHHHHHHhccccccceEEEeecCCCCChh----hHHHHhc--CCCEEEeccccccchHHHHHHHHHHh
Q 018394 175 LFREDATVDDLIDVIEGNRKYMKCVYVYNKIDVIGID----DVDKLAR--QPNSVVISCNLKLNLDRLLARMWEEM 244 (356)
Q Consensus 175 ~~thd~~~~~~~~~i~~~~~~~p~i~v~NK~Dl~~~~----~~~~l~~--~~~~i~iSa~~~~~l~~L~~~i~~~l 244 (356)
..+. ...+|+++|+||+|+.... +.+.+.+ ..+++++||.++.|+++|.+.+.+..
T Consensus 106 ------------~ql~--e~giPvIvVlNK~Dl~~~~~i~id~~~L~~~LG~pVvpiSA~~g~GIdeL~~~I~~~~ 167 (772)
T PRK09554 106 ------------LQLL--ELGIPCIVALNMLDIAEKQNIRIDIDALSARLGCPVIPLVSTRGRGIEALKLAIDRHQ 167 (772)
T ss_pred ------------HHHH--HcCCCEEEEEEchhhhhccCcHHHHHHHHHHhCCCEEEEEeecCCCHHHHHHHHHHhh
Confidence 0000 1136999999999986332 2333332 24689999999999999999998765
No 387
>PRK00093 GTP-binding protein Der; Reviewed
Probab=99.70 E-value=3.1e-17 Score=163.43 Aligned_cols=204 Identities=22% Similarity=0.235 Sum_probs=126.6
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHcCC-CCccccccccccccceEEEECCEeecccCccccccccccCccc----ccccccc
Q 018394 19 HGRVALIGFPSVGKSTLLTLLTGTH-SEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGR----GRQVIAV 93 (356)
Q Consensus 19 g~~v~LvG~~gaGKSTLln~L~g~~-~~vs~~p~TT~~~~~G~i~~~g~~i~~~D~pGl~~~~~~~~~~----~~~~~~~ 93 (356)
...|+|+|.||||||||+|+|++.. ..++++||||++.....+.+++..+.++||||+.......... .......
T Consensus 173 ~~~v~ivG~~n~GKStlin~ll~~~~~~~~~~~gtt~~~~~~~~~~~~~~~~lvDT~G~~~~~~~~~~~e~~~~~~~~~~ 252 (435)
T PRK00093 173 PIKIAIIGRPNVGKSSLINALLGEERVIVSDIAGTTRDSIDTPFERDGQKYTLIDTAGIRRKGKVTEGVEKYSVIRTLKA 252 (435)
T ss_pred ceEEEEECCCCCCHHHHHHHHhCCCceeecCCCCceEEEEEEEEEECCeeEEEEECCCCCCCcchhhHHHHHHHHHHHHH
Confidence 4689999999999999999999987 4689999999999988888899999999999986432211000 0011122
Q ss_pred ccchhHHHHHHhcCChHHHHHHHHHHHHHccCccccccCcccccceeccceeeeecCCCCCCCHHHHHHHHHHhcccCcE
Q 018394 94 SKSSDIVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNAE 173 (356)
Q Consensus 94 ~~~~d~i~~v~d~~~~~~~~~~i~~~L~~~~i~l~~~~~~lS~g~~qr~~ial~~DEp~~~LD~~~~~~il~~l~~~~~~ 173 (356)
++.+|++++|+|+..+....+ . .++.
T Consensus 253 ~~~ad~~ilViD~~~~~~~~~------------------------------------------~----~i~~-------- 278 (435)
T PRK00093 253 IERADVVLLVIDATEGITEQD------------------------------------------L----RIAG-------- 278 (435)
T ss_pred HHHCCEEEEEEeCCCCCCHHH------------------------------------------H----HHHH--------
Confidence 334455555555443211110 0 0111
Q ss_pred EEEccCCCHHHHHHHHhccccccceEEEeecCCCCChhhHHHH----h------cCCCEEEeccccccchHHHHHHHHHH
Q 018394 174 VLFREDATVDDLIDVIEGNRKYMKCVYVYNKIDVIGIDDVDKL----A------RQPNSVVISCNLKLNLDRLLARMWEE 243 (356)
Q Consensus 174 i~~thd~~~~~~~~~i~~~~~~~p~i~v~NK~Dl~~~~~~~~l----~------~~~~~i~iSa~~~~~l~~L~~~i~~~ 243 (356)
.+. ...+|+++|+||+|+...+..+.+ . ...+++++||+++.|++++.+.+.+.
T Consensus 279 --------------~~~--~~~~~~ivv~NK~Dl~~~~~~~~~~~~~~~~l~~~~~~~i~~~SA~~~~gv~~l~~~i~~~ 342 (435)
T PRK00093 279 --------------LAL--EAGRALVIVVNKWDLVDEKTMEEFKKELRRRLPFLDYAPIVFISALTGQGVDKLLEAIDEA 342 (435)
T ss_pred --------------HHH--HcCCcEEEEEECccCCCHHHHHHHHHHHHHhcccccCCCEEEEeCCCCCCHHHHHHHHHHH
Confidence 111 113699999999999854332221 1 13468999999999999988877553
Q ss_pred hCceE--E--------------EeCCC--CC---------CCCCCccEEeecCCCCCCHHHHHHHHHHhHhhcCcEeEE
Q 018394 244 MGLVR--V--------------YTKPQ--GQ---------QPDFTEPVVLSVDRGGCTVEDFCNHIHRSLVKDVKYVLV 295 (356)
Q Consensus 244 l~~i~--~--------------~~~~~--~~---------~p~~~~~~~~~~~r~g~~v~~~a~~ih~~l~~~f~~a~~ 295 (356)
..... + ...+| .+ .....+|.++-. ......+...+.++|.+.|+.++.
T Consensus 343 ~~~~~~~i~t~~ln~~l~~~~~~~~~p~~~~~~~k~~~~~q~~~~pp~f~~~---~n~~~~~~~~y~~~l~~~~r~~~~ 418 (435)
T PRK00093 343 YENANRRISTSVLNRVLEEAVERHPPPLVKGRRLKIKYATQVGTNPPTFVLF---VNDPELLPFSYKRYLENQLREAFD 418 (435)
T ss_pred HHHHcCcCChHHHHHHHHHHHHcCCCCCCCCeeeeEEEEEcCCCCCCEEEEE---eCCcccCCHHHHHHHHHHHHHHcC
Confidence 32100 0 00000 00 012233545544 555667777888888888888776
No 388
>PRK03003 GTP-binding protein Der; Reviewed
Probab=99.69 E-value=4.5e-17 Score=163.84 Aligned_cols=157 Identities=23% Similarity=0.339 Sum_probs=104.2
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHcCCC-CccccccccccccceEEEECCEeecccCccccccccccCccc--c--cccccc
Q 018394 19 HGRVALIGFPSVGKSTLLTLLTGTHS-EAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGR--G--RQVIAV 93 (356)
Q Consensus 19 g~~v~LvG~~gaGKSTLln~L~g~~~-~vs~~p~TT~~~~~G~i~~~g~~i~~~D~pGl~~~~~~~~~~--~--~~~~~~ 93 (356)
...|+|+|+||||||||+|+|++... .++++||||+|+....+.++|.++.++||||++.......+. . ......
T Consensus 211 ~~kI~iiG~~nvGKSSLin~l~~~~~~~~s~~~gtT~d~~~~~~~~~~~~~~l~DTaG~~~~~~~~~~~e~~~~~~~~~~ 290 (472)
T PRK03003 211 PRRVALVGKPNVGKSSLLNKLAGEERSVVDDVAGTTVDPVDSLIELGGKTWRFVDTAGLRRRVKQASGHEYYASLRTHAA 290 (472)
T ss_pred ceEEEEECCCCCCHHHHHHHHhCCCcccccCCCCccCCcceEEEEECCEEEEEEECCCccccccccchHHHHHHHHHHHH
Confidence 46899999999999999999999874 689999999999999999999999999999986432111000 0 000112
Q ss_pred ccchhHHHHHHhcCChHHHHHHHHHHHHHccCccccccCcccccceeccceeeeecCCCCCCCHHHHHHHHHHhcccCcE
Q 018394 94 SKSSDIVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNAE 173 (356)
Q Consensus 94 ~~~~d~i~~v~d~~~~~~~~~~i~~~L~~~~i~l~~~~~~lS~g~~qr~~ial~~DEp~~~LD~~~~~~il~~l~~~~~~ 173 (356)
++.+|++++|+|+.......+ . .++
T Consensus 291 i~~ad~vilV~Da~~~~s~~~---------------------------------------------~-~~~--------- 315 (472)
T PRK03003 291 IEAAEVAVVLIDASEPISEQD---------------------------------------------Q-RVL--------- 315 (472)
T ss_pred HhcCCEEEEEEeCCCCCCHHH---------------------------------------------H-HHH---------
Confidence 344555555555543211110 0 011
Q ss_pred EEEccCCCHHHHHHHHhccccccceEEEeecCCCCChhhH----HHH----h--cCCCEEEeccccccchHHHHHHHHHH
Q 018394 174 VLFREDATVDDLIDVIEGNRKYMKCVYVYNKIDVIGIDDV----DKL----A--RQPNSVVISCNLKLNLDRLLARMWEE 243 (356)
Q Consensus 174 i~~thd~~~~~~~~~i~~~~~~~p~i~v~NK~Dl~~~~~~----~~l----~--~~~~~i~iSa~~~~~l~~L~~~i~~~ 243 (356)
..+. ...+|+|+|+||+|+...+.. ..+ . .+.+++++||++|.|+++|.+.+.+.
T Consensus 316 -------------~~~~--~~~~piIiV~NK~Dl~~~~~~~~~~~~i~~~l~~~~~~~~~~~SAk~g~gv~~lf~~i~~~ 380 (472)
T PRK03003 316 -------------SMVI--EAGRALVLAFNKWDLVDEDRRYYLEREIDRELAQVPWAPRVNISAKTGRAVDKLVPALETA 380 (472)
T ss_pred -------------HHHH--HcCCCEEEEEECcccCChhHHHHHHHHHHHhcccCCCCCEEEEECCCCCCHHHHHHHHHHH
Confidence 1111 123699999999999753211 111 1 13468999999999999998888765
Q ss_pred hC
Q 018394 244 MG 245 (356)
Q Consensus 244 l~ 245 (356)
+.
T Consensus 381 ~~ 382 (472)
T PRK03003 381 LE 382 (472)
T ss_pred HH
Confidence 53
No 389
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=99.69 E-value=4.5e-17 Score=161.98 Aligned_cols=203 Identities=26% Similarity=0.273 Sum_probs=127.2
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcCC-CCccccccccccccceEEEECCEeecccCccccccccccCccc----cccccccc
Q 018394 20 GRVALIGFPSVGKSTLLTLLTGTH-SEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGR----GRQVIAVS 94 (356)
Q Consensus 20 ~~v~LvG~~gaGKSTLln~L~g~~-~~vs~~p~TT~~~~~G~i~~~g~~i~~~D~pGl~~~~~~~~~~----~~~~~~~~ 94 (356)
..++++|.||||||||+|+|++.. ..++++||||+++....+.++|..+.++||||+.......... ..+....+
T Consensus 173 ~~v~ivG~~~~GKSsLin~l~~~~~~~~~~~~gtt~~~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~e~~~~~~~~~~~ 252 (429)
T TIGR03594 173 IKIAIIGRPNVGKSTLVNALLGEERVIVSDIAGTTRDSIDIPFERNGKKYLLIDTAGIRRKGKVTEGVEKYSVLRTLKAI 252 (429)
T ss_pred eEEEEECCCCCCHHHHHHHHHCCCeeecCCCCCceECcEeEEEEECCcEEEEEECCCccccccchhhHHHHHHHHHHHHH
Confidence 579999999999999999999987 4689999999999999999999999999999986432111000 00111233
Q ss_pred cchhHHHHHHhcCChHHHHHHHHHHHHHccCccccccCcccccceeccceeeeecCCCCCCCHHHHHHHHHHhcccCcEE
Q 018394 95 KSSDIVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNAEV 174 (356)
Q Consensus 95 ~~~d~i~~v~d~~~~~~~~~~i~~~L~~~~i~l~~~~~~lS~g~~qr~~ial~~DEp~~~LD~~~~~~il~~l~~~~~~i 174 (356)
+.+|++++|+|+..+....+. .++
T Consensus 253 ~~ad~~ilV~D~~~~~~~~~~----------------------------------------------~~~---------- 276 (429)
T TIGR03594 253 ERADVVLLVLDATEGITEQDL----------------------------------------------RIA---------- 276 (429)
T ss_pred HhCCEEEEEEECCCCccHHHH----------------------------------------------HHH----------
Confidence 455555556555432211100 011
Q ss_pred EEccCCCHHHHHHHHhccccccceEEEeecCCCC-ChhhHHH----Hh------cCCCEEEeccccccchHHHHHHHHHH
Q 018394 175 LFREDATVDDLIDVIEGNRKYMKCVYVYNKIDVI-GIDDVDK----LA------RQPNSVVISCNLKLNLDRLLARMWEE 243 (356)
Q Consensus 175 ~~thd~~~~~~~~~i~~~~~~~p~i~v~NK~Dl~-~~~~~~~----l~------~~~~~i~iSa~~~~~l~~L~~~i~~~ 243 (356)
..+. ...+|+++|+||+|+. ..+..+. +. ...+++++||++|.|++++.+.+.+.
T Consensus 277 ------------~~~~--~~~~~iiiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~vi~~SA~~g~~v~~l~~~i~~~ 342 (429)
T TIGR03594 277 ------------GLIL--EAGKALVIVVNKWDLVKDEKTREEFKKELRRKLPFLDFAPIVFISALTGQGVDKLLDAIDEV 342 (429)
T ss_pred ------------HHHH--HcCCcEEEEEECcccCCCHHHHHHHHHHHHHhcccCCCCceEEEeCCCCCCHHHHHHHHHHH
Confidence 1111 1136999999999997 3332222 11 12468999999999999988877654
Q ss_pred hCce--EEEe--------------CCC--CC---------CCCCCccEEeecCCCCCCHHHHHHHHHHhHhhcCcEeEE
Q 018394 244 MGLV--RVYT--------------KPQ--GQ---------QPDFTEPVVLSVDRGGCTVEDFCNHIHRSLVKDVKYVLV 295 (356)
Q Consensus 244 l~~i--~~~~--------------~~~--~~---------~p~~~~~~~~~~~r~g~~v~~~a~~ih~~l~~~f~~a~~ 295 (356)
+... ++-| .+| .+ .....+|.++-. ......+...+.++|.+.|+.++.
T Consensus 343 ~~~~~~~i~t~~ln~~l~~~~~~~~~p~~~~~~~k~~y~~q~~~~pp~~~~~---~n~~~~~~~~y~~~l~~~~~~~~~ 418 (429)
T TIGR03594 343 YENANRRISTSKLNRVLEEAVAAHPPPLVNGRRLKIKYATQVGTNPPTFVLF---GNRPELLPFSYKRYLENQFREAFG 418 (429)
T ss_pred HHHhcCcCCHHHHHHHHHHHHHcCCCCCCCCceeeEEEEECCCCCCCEEEEE---EcCcccCCHHHHHHHHHHHHHhcC
Confidence 3311 0000 000 00 012234555555 555667778888888888887775
No 390
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=99.69 E-value=2.6e-17 Score=163.63 Aligned_cols=155 Identities=25% Similarity=0.261 Sum_probs=105.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC-CCccccccccccccceEEEECCEeecccCcccccccccc-Cccccccccccccchh
Q 018394 21 RVALIGFPSVGKSTLLTLLTGTH-SEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASE-GKGRGRQVIAVSKSSD 98 (356)
Q Consensus 21 ~v~LvG~~gaGKSTLln~L~g~~-~~vs~~p~TT~~~~~G~i~~~g~~i~~~D~pGl~~~~~~-~~~~~~~~~~~~~~~d 98 (356)
+|+|+|+||||||||+|.|++.. +.++++||+|++...+.+.++|..+.++||||+...... ......+....++.+|
T Consensus 1 ~i~ivG~~nvGKStL~n~l~~~~~~~v~~~~g~t~d~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~ad 80 (429)
T TIGR03594 1 VVAIVGRPNVGKSTLFNRLTGKRDAIVSDTPGVTRDRKYGDAEWGGREFILIDTGGIEEDDDGLDKQIREQAEIAIEEAD 80 (429)
T ss_pred CEEEECCCCCCHHHHHHHHhCCCcceecCCCCcccCceEEEEEECCeEEEEEECCCCCCcchhHHHHHHHHHHHHHhhCC
Confidence 48999999999999999999987 468999999999999999999999999999997421100 0001112223345556
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHHccCccccccCcccccceeccceeeeecCCCCCCCHHHHHHHHHHhcccCcEEEEcc
Q 018394 99 IVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNAEVLFRE 178 (356)
Q Consensus 99 ~i~~v~d~~~~~~~~~~i~~~L~~~~i~l~~~~~~lS~g~~qr~~ial~~DEp~~~LD~~~~~~il~~l~~~~~~i~~th 178 (356)
++++|+|+.......+ ..+.++++
T Consensus 81 ~vl~vvD~~~~~~~~d-------------------------------------------~~i~~~l~------------- 104 (429)
T TIGR03594 81 VILFVVDGREGLTPED-------------------------------------------EEIAKWLR------------- 104 (429)
T ss_pred EEEEEEeCCCCCCHHH-------------------------------------------HHHHHHHH-------------
Confidence 6666665543211100 00111111
Q ss_pred CCCHHHHHHHHhccccccceEEEeecCCCCChhh-HHHHhc--CCCEEEeccccccchHHHHHHHHHHhC
Q 018394 179 DATVDDLIDVIEGNRKYMKCVYVYNKIDVIGIDD-VDKLAR--QPNSVVISCNLKLNLDRLLARMWEEMG 245 (356)
Q Consensus 179 d~~~~~~~~~i~~~~~~~p~i~v~NK~Dl~~~~~-~~~l~~--~~~~i~iSa~~~~~l~~L~~~i~~~l~ 245 (356)
+..+|+++|+||+|+...+. ..++.. ..+++++||.+|.|+++|.+.+.+.+.
T Consensus 105 --------------~~~~piilVvNK~D~~~~~~~~~~~~~lg~~~~~~vSa~~g~gv~~ll~~i~~~l~ 160 (429)
T TIGR03594 105 --------------KSGKPVILVANKIDGKKEDAVAAEFYSLGFGEPIPISAEHGRGIGDLLDAILELLP 160 (429)
T ss_pred --------------HhCCCEEEEEECccCCcccccHHHHHhcCCCCeEEEeCCcCCChHHHHHHHHHhcC
Confidence 11369999999999875432 233332 346899999999999999999988774
No 391
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein.
Probab=99.69 E-value=3e-16 Score=175.07 Aligned_cols=157 Identities=12% Similarity=0.076 Sum_probs=110.9
Q ss_pred CCCCeEEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCccccccccccccceEEEECCEeecccCccccccccccCcccc
Q 018394 8 AGEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRG 87 (356)
Q Consensus 8 ~~~s~~v~~~~g~~v~LvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~~D~pGl~~~~~~~~~~~ 87 (356)
+++|+.+.+ |+.+||+||||||||||||+|+|...+ | .+..|.|.++|.++.. .+ ....++.
T Consensus 780 ~~vs~~i~~--Ge~~aI~G~sGaGKSTLL~~Lag~~~~-----g---~~~~G~I~i~G~~~~~----~~----~~~i~yv 841 (1394)
T TIGR00956 780 NNVDGWVKP--GTLTALMGASGAGKTTLLNVLAERVTT-----G---VITGGDRLVNGRPLDS----SF----QRSIGYV 841 (1394)
T ss_pred eCCEEEEEC--CEEEEEECCCCCCHHHHHHHHhCCCCC-----C---CcceeEEEECCEECCh----hh----hcceeee
Confidence 589999999 889999999999999999999998742 0 1367999999988631 11 1223344
Q ss_pred ccccccc---cchhHHHHHHhcC-----ChHHHHHHHHHHHHHccC--ccccccC----cccccceecccee--------
Q 018394 88 RQVIAVS---KSSDIVLMVLDAS-----KSEGHRQILTKELEAVGL--RLNKRPP----QIYFKKKKTGGIS-------- 145 (356)
Q Consensus 88 ~~~~~~~---~~~d~i~~v~d~~-----~~~~~~~~i~~~L~~~~i--~l~~~~~----~lS~g~~qr~~ia-------- 145 (356)
.|....+ ...+.+.+..... ...+..+.+++.++.+++ ..++.+. .||+||+||+.|+
T Consensus 842 ~Q~~~~~~~~Tv~E~L~~~a~l~~~~~~~~~~~~~~v~~~l~~l~L~~~~d~~v~~~~~~LSgGqrqRl~Ia~aL~~~P~ 921 (1394)
T TIGR00956 842 QQQDLHLPTSTVRESLRFSAYLRQPKSVSKSEKMEYVEEVIKLLEMESYADAVVGVPGEGLNVEQRKRLTIGVELVAKPK 921 (1394)
T ss_pred cccccCCCCCCHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHcCChhhCCCeeCCCCCCCCHHHhhHHHHHHHHHcCCC
Confidence 4432222 2344444433221 112234567889999998 4566665 7999999999887
Q ss_pred --eeecCCCCCCCHHHHHH---HHHHhc-ccCcEEEEccCCCH
Q 018394 146 --FNSTLPLTHVDEKLCYQ---ILHEYK-IHNAEVLFREDATV 182 (356)
Q Consensus 146 --l~~DEp~~~LD~~~~~~---il~~l~-~~~~~i~~thd~~~ 182 (356)
+++||||++||...... +|+.+. .+.++|+++|+.+.
T Consensus 922 ~iLlLDEPTsgLD~~~~~~i~~~L~~la~~g~tvI~t~H~~~~ 964 (1394)
T TIGR00956 922 LLLFLDEPTSGLDSQTAWSICKLMRKLADHGQAILCTIHQPSA 964 (1394)
T ss_pred eEEEEcCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCH
Confidence 78999999999987554 444543 34599999999874
No 392
>cd01879 FeoB Ferrous iron transport protein B (FeoB) subfamily. E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent.
Probab=99.69 E-value=2.8e-17 Score=139.89 Aligned_cols=148 Identities=25% Similarity=0.319 Sum_probs=100.4
Q ss_pred EEcCCCCcHHHHHHHHHcCCCCccccccccccccceEEEECCEeecccCccccccccccC--ccccccccccccchhHHH
Q 018394 24 LIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEG--KGRGRQVIAVSKSSDIVL 101 (356)
Q Consensus 24 LvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~~D~pGl~~~~~~~--~~~~~~~~~~~~~~d~i~ 101 (356)
|+|.+|||||||+|++++....++++|+||++...+.+.++|..+.++||||........ ..+...+... ..+|+++
T Consensus 1 l~G~~~~GKssl~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~-~~~d~vi 79 (158)
T cd01879 1 LVGNPNVGKTTLFNALTGARQKVGNWPGVTVEKKEGRFKLGGKEIEIVDLPGTYSLSPYSEDEKVARDFLLG-EKPDLIV 79 (158)
T ss_pred CCCCCCCCHHHHHHHHhcCcccccCCCCcccccceEEEeeCCeEEEEEECCCccccCCCChhHHHHHHHhcC-CCCcEEE
Confidence 589999999999999999887788999999999999999999999999999975422110 0011111111 3566666
Q ss_pred HHHhcCChHHHHHHHHHHHHHccCccccccCcccccceeccceeeeecCCCCCCCHHHHHHHHHHhcccCcEEEEccCCC
Q 018394 102 MVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNAEVLFREDAT 181 (356)
Q Consensus 102 ~v~d~~~~~~~~~~i~~~L~~~~i~l~~~~~~lS~g~~qr~~ial~~DEp~~~LD~~~~~~il~~l~~~~~~i~~thd~~ 181 (356)
+++|+........ ++.
T Consensus 80 ~v~d~~~~~~~~~------------------------------------------------~~~---------------- 95 (158)
T cd01879 80 NVVDATNLERNLY------------------------------------------------LTL---------------- 95 (158)
T ss_pred EEeeCCcchhHHH------------------------------------------------HHH----------------
Confidence 6666543211100 000
Q ss_pred HHHHHHHHhccccccceEEEeecCCCCChh----hHHHHhc--CCCEEEeccccccchHHHHHHHHHHh
Q 018394 182 VDDLIDVIEGNRKYMKCVYVYNKIDVIGID----DVDKLAR--QPNSVVISCNLKLNLDRLLARMWEEM 244 (356)
Q Consensus 182 ~~~~~~~i~~~~~~~p~i~v~NK~Dl~~~~----~~~~l~~--~~~~i~iSa~~~~~l~~L~~~i~~~l 244 (356)
.+. ...+|.++|+||+|+.... +...+.. ..+++++||.++.|++++.+.+...+
T Consensus 96 ------~~~--~~~~~~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~iSa~~~~~~~~l~~~l~~~~ 156 (158)
T cd01879 96 ------QLL--ELGLPVVVALNMIDEAEKRGIKIDLDKLSELLGVPVVPTSARKGEGIDELKDAIAELA 156 (158)
T ss_pred ------HHH--HcCCCEEEEEehhhhcccccchhhHHHHHHhhCCCeEEEEccCCCCHHHHHHHHHHHh
Confidence 000 1136999999999997442 2223322 23589999999999999999887654
No 393
>cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes. It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance.
Probab=99.69 E-value=2.6e-17 Score=139.55 Aligned_cols=154 Identities=27% Similarity=0.311 Sum_probs=100.2
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHcCCC-CccccccccccccceEEEECCEeecccCccccccccccC-ccccccccccccc
Q 018394 19 HGRVALIGFPSVGKSTLLTLLTGTHS-EAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEG-KGRGRQVIAVSKS 96 (356)
Q Consensus 19 g~~v~LvG~~gaGKSTLln~L~g~~~-~vs~~p~TT~~~~~G~i~~~g~~i~~~D~pGl~~~~~~~-~~~~~~~~~~~~~ 96 (356)
|..|+++|++|||||||+|+|++... .++++|+||.+...+.+.+++.++.++||||+....... ..........+..
T Consensus 1 ~~~i~l~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~ 80 (157)
T cd04164 1 GIKVVIVGKPNVGKSSLLNALAGRDRAIVSDIAGTTRDVIEESIDIGGIPVRLIDTAGIRETEDEIEKIGIERAREAIEE 80 (157)
T ss_pred CcEEEEECCCCCCHHHHHHHHHCCceEeccCCCCCccceEEEEEEeCCEEEEEEECCCcCCCcchHHHHHHHHHHHHHhh
Confidence 46899999999999999999999873 578899999999999999999999999999974321100 0000011111223
Q ss_pred hhHHHHHHhcCChHHHHHHHHHHHHHccCccccccCcccccceeccceeeeecCCCCCCCHHHHHHHHHHhcccCcEEEE
Q 018394 97 SDIVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNAEVLF 176 (356)
Q Consensus 97 ~d~i~~v~d~~~~~~~~~~i~~~L~~~~i~l~~~~~~lS~g~~qr~~ial~~DEp~~~LD~~~~~~il~~l~~~~~~i~~ 176 (356)
+|++++++|+..+.. ..+. ++
T Consensus 81 ~~~~v~v~d~~~~~~------------------------------------------~~~~----~~------------- 101 (157)
T cd04164 81 ADLVLFVIDASRGLD------------------------------------------EEDL----EI------------- 101 (157)
T ss_pred CCEEEEEEECCCCCC------------------------------------------HHHH----HH-------------
Confidence 333333333332110 0000 00
Q ss_pred ccCCCHHHHHHHHhccccccceEEEeecCCCCChhhHHHHhcCCCEEEeccccccchHHHHHHHHHHh
Q 018394 177 REDATVDDLIDVIEGNRKYMKCVYVYNKIDVIGIDDVDKLARQPNSVVISCNLKLNLDRLLARMWEEM 244 (356)
Q Consensus 177 thd~~~~~~~~~i~~~~~~~p~i~v~NK~Dl~~~~~~~~l~~~~~~i~iSa~~~~~l~~L~~~i~~~l 244 (356)
... ...+|+++|+||+|+.............+++++||.++.|+++|.+.|.+.+
T Consensus 102 ---------~~~----~~~~~vi~v~nK~D~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~~ 156 (157)
T cd04164 102 ---------LEL----PADKPIIVVLNKSDLLPDSELLSLLAGKPIIAISAKTGEGLDELKEALLELA 156 (157)
T ss_pred ---------HHh----hcCCCEEEEEEchhcCCccccccccCCCceEEEECCCCCCHHHHHHHHHHhh
Confidence 000 1136999999999998654431111234689999999999999999988754
No 394
>KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.69 E-value=1.1e-16 Score=170.32 Aligned_cols=180 Identities=15% Similarity=0.132 Sum_probs=135.4
Q ss_pred CCCCeEEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCccccccccccccceEEEECCEeecccCccccccccccCcccc
Q 018394 8 AGEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRG 87 (356)
Q Consensus 8 ~~~s~~v~~~~g~~v~LvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~~D~pGl~~~~~~~~~~~ 87 (356)
+|++|+++. |..+|||||+||||||.+.+|-+.+-| ..|.|.+||.++.-+++.-++. .++.+
T Consensus 1007 ~~l~l~i~~--GqTvALVG~SGsGKSTvI~LLeRfYdp-----------~~G~V~IDg~dik~lnl~~LR~----~i~lV 1069 (1228)
T KOG0055|consen 1007 NNLSLSIRA--GQTVALVGPSGSGKSTVISLLERFYDP-----------DAGKVKIDGVDIKDLNLKWLRK----QIGLV 1069 (1228)
T ss_pred cCCcEEecC--CCEEEEECCCCCCHHHHHHHHHHhcCC-----------CCCeEEECCcccccCCHHHHHH----hccee
Confidence 588999999 889999999999999999999998755 8999999999999888766553 35666
Q ss_pred ccccccccc--hhHHHHHHhcCChHHHHHHHHHHHHHccC-------------ccccccCcccccceecccee-------
Q 018394 88 RQVIAVSKS--SDIVLMVLDASKSEGHRQILTKELEAVGL-------------RLNKRPPQIYFKKKKTGGIS------- 145 (356)
Q Consensus 88 ~~~~~~~~~--~d~i~~v~d~~~~~~~~~~i~~~L~~~~i-------------~l~~~~~~lS~g~~qr~~ia------- 145 (356)
.|.+.++.. .++|.+-.+ . -..+.+.+.++..++ ....+-.+|||||+||.+||
T Consensus 1070 sQEP~LF~~TIrENI~YG~~---~-vs~~eIi~Aak~ANaH~FI~sLP~GyDT~vGerG~QLSGGQKQRIAIARAilRnP 1145 (1228)
T KOG0055|consen 1070 SQEPVLFNGTIRENIAYGSE---E-VSEEEIIEAAKLANAHNFISSLPQGYDTRVGERGVQLSGGQKQRIAIARAILRNP 1145 (1228)
T ss_pred ccCchhhcccHHHHHhccCC---C-CCHHHHHHHHHHhhhHHHHhcCcCcccCccCcccCcCCchHHHHHHHHHHHHcCC
Confidence 666655543 566666521 1 122334445544443 33445578999999999999
Q ss_pred --eeecCCCCCCCHHH---HHHHHHHhcccCcEEEEccCCCHHHHHHHHhccccccceEEEeecCCCCChhhHHHHhc
Q 018394 146 --FNSTLPLTHVDEKL---CYQILHEYKIHNAEVLFREDATVDDLIDVIEGNRKYMKCVYVYNKIDVIGIDDVDKLAR 218 (356)
Q Consensus 146 --l~~DEp~~~LD~~~---~~~il~~l~~~~~~i~~thd~~~~~~~~~i~~~~~~~p~i~v~NK~Dl~~~~~~~~l~~ 218 (356)
|++||.|++||.+. +++.|+....+.|.|++.|.++... +.++|+|+...-......-++|.+
T Consensus 1146 kILLLDEATSALDseSErvVQeALd~a~~gRT~IvIAHRLSTIq----------naD~I~Vi~~G~VvE~GtH~~L~~ 1213 (1228)
T KOG0055|consen 1146 KILLLDEATSALDSESERVVQEALDRAMEGRTTIVIAHRLSTIQ----------NADVIAVLKNGKVVEQGTHDELLA 1213 (1228)
T ss_pred CeeeeeccchhhhhhhHHHHHHHHHHhhcCCcEEEEecchhhhh----------cCCEEEEEECCEEEecccHHHHHh
Confidence 99999999999876 7788888888899999999876433 357889988776665555555543
No 395
>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR). The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.
Probab=99.68 E-value=1.2e-16 Score=179.57 Aligned_cols=170 Identities=20% Similarity=0.119 Sum_probs=121.2
Q ss_pred CCCCeEEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCccccccccccccceEEEECCEeecccCccccccccccCcccc
Q 018394 8 AGEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRG 87 (356)
Q Consensus 8 ~~~s~~v~~~~g~~v~LvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~~D~pGl~~~~~~~~~~~ 87 (356)
+++||++++ |++|||+|++|||||||+++|.|... ..|.|.++|.++.-++...++ ..++..
T Consensus 1236 ~~is~~I~~--GekvaIvGrSGsGKSTLl~lL~rl~~------------~~G~I~IdG~di~~i~~~~lR----~~is~I 1297 (1490)
T TIGR01271 1236 QDLSFSVEG--GQRVGLLGRTGSGKSTLLSALLRLLS------------TEGEIQIDGVSWNSVTLQTWR----KAFGVI 1297 (1490)
T ss_pred eccEEEEcC--CCEEEEECCCCCCHHHHHHHHhhhcC------------CCcEEEECCEEcccCCHHHHH----hceEEE
Confidence 689999999 88999999999999999999999863 479999999998766654443 235566
Q ss_pred ccccccccchhHHHHHHhcCChHHHHHHHHHHHHHccC--ccccc-----------cCcccccceecccee---------
Q 018394 88 RQVIAVSKSSDIVLMVLDASKSEGHRQILTKELEAVGL--RLNKR-----------PPQIYFKKKKTGGIS--------- 145 (356)
Q Consensus 88 ~~~~~~~~~~d~i~~v~d~~~~~~~~~~i~~~L~~~~i--~l~~~-----------~~~lS~g~~qr~~ia--------- 145 (356)
.|....+.. . +..-+|.... ...+.+.+.|+.+++ .+... -..||+||+||+++|
T Consensus 1298 pQdp~LF~G-T-IR~NLdp~~~-~tdeei~~aL~~~~L~~~i~~lp~GLdt~v~e~G~nLSgGQrQrL~LARALLr~~~I 1374 (1490)
T TIGR01271 1298 PQKVFIFSG-T-FRKNLDPYEQ-WSDEEIWKVAEEVGLKSVIEQFPDKLDFVLVDGGYVLSNGHKQLMCLARSILSKAKI 1374 (1490)
T ss_pred eCCCccCcc-C-HHHHhCcccC-CCHHHHHHHHHHCCCHHHHHhCccccccccccCCCcCCHHHHHHHHHHHHHhCCCCE
Confidence 676666653 1 2222233321 123456777777776 22222 236999999999998
Q ss_pred eeecCCCCCCCHHHHH---HHHHHhcccCcEEEEccCCCHHHHHHHHhccccccceEEEeecCCCC
Q 018394 146 FNSTLPLTHVDEKLCY---QILHEYKIHNAEVLFREDATVDDLIDVIEGNRKYMKCVYVYNKIDVI 208 (356)
Q Consensus 146 l~~DEp~~~LD~~~~~---~il~~l~~~~~~i~~thd~~~~~~~~~i~~~~~~~p~i~v~NK~Dl~ 208 (356)
+++||||++||.++-. +.|+....+.|+|+++|..+... ..+.|+|+.+.-+.
T Consensus 1375 LlLDEaTS~lD~~Te~~I~~~L~~~~~~~TvI~IaHRl~ti~----------~~DrIlvL~~G~iv 1430 (1490)
T TIGR01271 1375 LLLDEPSAHLDPVTLQIIRKTLKQSFSNCTVILSEHRVEALL----------ECQQFLVIEGSSVK 1430 (1490)
T ss_pred EEEeCCcccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHH----------hCCEEEEEECCEEE
Confidence 9999999999998744 44444445679999999864322 23678888776544
No 396
>PLN03073 ABC transporter F family; Provisional
Probab=99.68 E-value=7.5e-17 Score=168.93 Aligned_cols=165 Identities=10% Similarity=-0.011 Sum_probs=103.0
Q ss_pred CCCCeEEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCccccccccccccceEEEECCEeecccCccc----------cc
Q 018394 8 AGEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPG----------II 77 (356)
Q Consensus 8 ~~~s~~v~~~~g~~v~LvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~~D~pG----------l~ 77 (356)
.++||+|.. |+++||||+|||||||||++|+|.... | -|..|.|.+.++.+..-|+.- ..
T Consensus 194 ~~isl~i~~--Ge~~gLvG~NGsGKSTLLr~l~g~~~~-----g---~p~~g~I~~~~Q~~~g~~~t~~~~v~~~~~~~~ 263 (718)
T PLN03073 194 VDASVTLAF--GRHYGLVGRNGTGKTTFLRYMAMHAID-----G---IPKNCQILHVEQEVVGDDTTALQCVLNTDIERT 263 (718)
T ss_pred ECCEEEECC--CCEEEEECCCCCCHHHHHHHHcCCCCC-----C---CCCCCEEEEEeccCCCCCCCHHHHHHHhhHHHH
Confidence 589999999 889999999999999999999997411 1 246777766444321111100 00
Q ss_pred cccccCcccccccccc----------------ccchhH------HHHHHhcCChHHHHHHHHHHHHHccC---ccccccC
Q 018394 78 EGASEGKGRGRQVIAV----------------SKSSDI------VLMVLDASKSEGHRQILTKELEAVGL---RLNKRPP 132 (356)
Q Consensus 78 ~~~~~~~~~~~~~~~~----------------~~~~d~------i~~v~d~~~~~~~~~~i~~~L~~~~i---~l~~~~~ 132 (356)
.......++..|.... ....++ +.--+...+......++...|..+|+ ..++++.
T Consensus 264 ~~~~~~~~~~~q~~~l~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~r~~~~L~~lgl~~~~~~~~~~ 343 (718)
T PLN03073 264 QLLEEEAQLVAQQRELEFETETGKGKGANKDGVDKDAVSQRLEEIYKRLELIDAYTAEARAASILAGLSFTPEMQVKATK 343 (718)
T ss_pred HHHHHHHHHHHHHHHhhhcccccccccccccccchHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHCCCChHHHhCchh
Confidence 0000001111110000 000000 00011111111223456778888888 3678899
Q ss_pred cccccceecccee---------eeecCCCCCCCHHHHHHHHHHhcc-cCcEEEEccCCCH
Q 018394 133 QIYFKKKKTGGIS---------FNSTLPLTHVDEKLCYQILHEYKI-HNAEVLFREDATV 182 (356)
Q Consensus 133 ~lS~g~~qr~~ia---------l~~DEp~~~LD~~~~~~il~~l~~-~~~~i~~thd~~~ 182 (356)
+||+|++||++|| +++||||++||+..+..+.+.+.. +.++|++|||...
T Consensus 344 ~LSgG~k~rv~LA~aL~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~~~tviivsHd~~~ 403 (718)
T PLN03073 344 TFSGGWRMRIALARALFIEPDLLLLDEPTNHLDLHAVLWLETYLLKWPKTFIVVSHAREF 403 (718)
T ss_pred hCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHcCCEEEEEECCHHH
Confidence 9999999999998 999999999999998777776663 5699999999654
No 397
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=99.68 E-value=1.1e-16 Score=179.00 Aligned_cols=170 Identities=15% Similarity=0.146 Sum_probs=116.0
Q ss_pred CCCCeEEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCccccccccccccceEEEE-CCEeecccCccccccccccCccc
Q 018394 8 AGEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHY-NDTKIQLLDLPGIIEGASEGKGR 86 (356)
Q Consensus 8 ~~~s~~v~~~~g~~v~LvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~-~g~~i~~~D~pGl~~~~~~~~~~ 86 (356)
++++|++++ |+++||+|+||||||||+++|+|...| ..|.|.+ +|.++.-++...+ ...+++
T Consensus 402 ~~isl~i~~--Ge~vaIvG~SGsGKSTLl~lL~gl~~p-----------~~G~I~i~~g~~i~~~~~~~l----r~~Ig~ 464 (1466)
T PTZ00265 402 KDLNFTLTE--GKTYAFVGESGCGKSTILKLIERLYDP-----------TEGDIIINDSHNLKDINLKWW----RSKIGV 464 (1466)
T ss_pred ccceEEEcC--CCEEEEECCCCCCHHHHHHHHHHhccC-----------CCCeEEEeCCcchhhCCHHHH----HHhccE
Confidence 689999999 889999999999999999999999876 8999999 4677654443222 223455
Q ss_pred cccccccccc--hhHHHHHHhcC-----------------------------------------------------ChHH
Q 018394 87 GRQVIAVSKS--SDIVLMVLDAS-----------------------------------------------------KSEG 111 (356)
Q Consensus 87 ~~~~~~~~~~--~d~i~~v~d~~-----------------------------------------------------~~~~ 111 (356)
+.|....+.. .+++.+..... ....
T Consensus 465 V~Q~~~LF~~TI~eNI~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 544 (1466)
T PTZ00265 465 VSQDPLLFSNSIKNNIKYSLYSLKDLEALSNYYNEDGNDSQENKNKRNSCRAKCAGDLNDMSNTTDSNELIEMRKNYQTI 544 (1466)
T ss_pred ecccccchhccHHHHHHhcCCCccccchhccccccccccccccccccccccccccchhhhcccccchhhhhhcccccccC
Confidence 5555444432 34443321000 0001
Q ss_pred HHHHHHHHHHHccC--c-----------cccccCcccccceecccee---------eeecCCCCCCCHHHHHH---HHHH
Q 018394 112 HRQILTKELEAVGL--R-----------LNKRPPQIYFKKKKTGGIS---------FNSTLPLTHVDEKLCYQ---ILHE 166 (356)
Q Consensus 112 ~~~~i~~~L~~~~i--~-----------l~~~~~~lS~g~~qr~~ia---------l~~DEp~~~LD~~~~~~---il~~ 166 (356)
..+.+.+.++.+++ . +......||+||+||++|| +++||||++||...... .|+.
T Consensus 545 ~~~~v~~a~~~~~l~~~i~~lp~g~dT~vg~~g~~LSGGQkQRiaIARAll~~P~ILlLDEpTSaLD~~se~~i~~~L~~ 624 (1466)
T PTZ00265 545 KDSEVVDVSKKVLIHDFVSALPDKYETLVGSNASKLSGGQKQRISIARAIIRNPKILILDEATSSLDNKSEYLVQKTINN 624 (1466)
T ss_pred CHHHHHHHHHHhCcHHHHHhCccccCceeCCCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHHHHHHHH
Confidence 12345666666655 2 3456778999999999998 99999999999987544 4554
Q ss_pred hc--ccCcEEEEccCCCHHHHHHHHhccccccceEEEeec
Q 018394 167 YK--IHNAEVLFREDATVDDLIDVIEGNRKYMKCVYVYNK 204 (356)
Q Consensus 167 l~--~~~~~i~~thd~~~~~~~~~i~~~~~~~p~i~v~NK 204 (356)
+. .+.|+|+++|+.+... ..+.|+++..
T Consensus 625 ~~~~~g~TvIiIsHrls~i~----------~aD~Iivl~~ 654 (1466)
T PTZ00265 625 LKGNENRITIIIAHRLSTIR----------YANTIFVLSN 654 (1466)
T ss_pred HhhcCCCEEEEEeCCHHHHH----------hCCEEEEEeC
Confidence 43 2469999999975432 2366777765
No 398
>cd01894 EngA1 EngA1 subfamily. This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.67 E-value=4.1e-17 Score=138.41 Aligned_cols=151 Identities=26% Similarity=0.299 Sum_probs=97.0
Q ss_pred EEEcCCCCcHHHHHHHHHcCC-CCccccccccccccceEEEECCEeecccCccccccccc-cCccccccccccccchhHH
Q 018394 23 ALIGFPSVGKSTLLTLLTGTH-SEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGAS-EGKGRGRQVIAVSKSSDIV 100 (356)
Q Consensus 23 ~LvG~~gaGKSTLln~L~g~~-~~vs~~p~TT~~~~~G~i~~~g~~i~~~D~pGl~~~~~-~~~~~~~~~~~~~~~~d~i 100 (356)
+|+|.+|||||||+|.|++.. ..++++|+||++.....+.+++..+.++||||+..... ............++.+|++
T Consensus 1 ~l~G~~~~GKssl~~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~~d~i 80 (157)
T cd01894 1 AIVGRPNVGKSTLFNRLTGRRDAIVEDTPGVTRDRIYGEAEWGGREFILIDTGGIEPDDEGISKEIREQAELAIEEADVI 80 (157)
T ss_pred CccCCCCCCHHHHHHHHhCCcEEeecCCCCceeCceeEEEEECCeEEEEEECCCCCCchhHHHHHHHHHHHHHHHhCCEE
Confidence 589999999999999999976 45788999999999999999999999999999753211 0000000111122334444
Q ss_pred HHHHhcCChHHHHHHHHHHHHHccCccccccCcccccceeccceeeeecCCCCCCCHHHHHHHHHHhcccCcEEEEccCC
Q 018394 101 LMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNAEVLFREDA 180 (356)
Q Consensus 101 ~~v~d~~~~~~~~~~i~~~L~~~~i~l~~~~~~lS~g~~qr~~ial~~DEp~~~LD~~~~~~il~~l~~~~~~i~~thd~ 180 (356)
++++|....... .+. .+.++++
T Consensus 81 i~v~d~~~~~~~------------------------------------------~~~-~~~~~~~--------------- 102 (157)
T cd01894 81 LFVVDGREGLTP------------------------------------------ADE-EIAKYLR--------------- 102 (157)
T ss_pred EEEEeccccCCc------------------------------------------cHH-HHHHHHH---------------
Confidence 444443221100 000 0111111
Q ss_pred CHHHHHHHHhccccccceEEEeecCCCCChhhH-HHHhc--CCCEEEeccccccchHHHHHHHHHH
Q 018394 181 TVDDLIDVIEGNRKYMKCVYVYNKIDVIGIDDV-DKLAR--QPNSVVISCNLKLNLDRLLARMWEE 243 (356)
Q Consensus 181 ~~~~~~~~i~~~~~~~p~i~v~NK~Dl~~~~~~-~~l~~--~~~~i~iSa~~~~~l~~L~~~i~~~ 243 (356)
....|+++|+||+|+...... ..+.. ...++++||+++.|++++.+.+.+.
T Consensus 103 ------------~~~~piiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~ 156 (157)
T cd01894 103 ------------KSKKPVILVVNKVDNIKEEDEAAEFYSLGFGEPIPISAEHGRGIGDLLDAILEL 156 (157)
T ss_pred ------------hcCCCEEEEEECcccCChHHHHHHHHhcCCCCeEEEecccCCCHHHHHHHHHhh
Confidence 112699999999999865432 22222 2357999999999999999988764
No 399
>PRK03003 GTP-binding protein Der; Reviewed
Probab=99.67 E-value=6.5e-17 Score=162.68 Aligned_cols=155 Identities=22% Similarity=0.236 Sum_probs=106.5
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcCC-CCccccccccccccceEEEECCEeecccCccccccccccCc--cccccccccccc
Q 018394 20 GRVALIGFPSVGKSTLLTLLTGTH-SEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGK--GRGRQVIAVSKS 96 (356)
Q Consensus 20 ~~v~LvG~~gaGKSTLln~L~g~~-~~vs~~p~TT~~~~~G~i~~~g~~i~~~D~pGl~~~~~~~~--~~~~~~~~~~~~ 96 (356)
..|+|+|+||||||||||.|++.. +.+++.||+|++...+.+.++|..+.++||||+..... .. ....+....++.
T Consensus 39 ~~V~IvG~~nvGKSSL~nrl~~~~~~~v~~~~gvT~d~~~~~~~~~~~~~~l~DT~G~~~~~~-~~~~~~~~~~~~~~~~ 117 (472)
T PRK03003 39 PVVAVVGRPNVGKSTLVNRILGRREAVVEDVPGVTRDRVSYDAEWNGRRFTVVDTGGWEPDAK-GLQASVAEQAEVAMRT 117 (472)
T ss_pred CEEEEEcCCCCCHHHHHHHHhCcCcccccCCCCCCEeeEEEEEEECCcEEEEEeCCCcCCcch-hHHHHHHHHHHHHHHh
Confidence 479999999999999999999976 46889999999999999999999999999999742111 00 011122233556
Q ss_pred hhHHHHHHhcCChHHHHHHHHHHHHHccCccccccCcccccceeccceeeeecCCCCCCCHHHHHHHHHHhcccCcEEEE
Q 018394 97 SDIVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNAEVLF 176 (356)
Q Consensus 97 ~d~i~~v~d~~~~~~~~~~i~~~L~~~~i~l~~~~~~lS~g~~qr~~ial~~DEp~~~LD~~~~~~il~~l~~~~~~i~~ 176 (356)
+|++++|+|+.......+ ..+.+++
T Consensus 118 aD~il~VvD~~~~~s~~~-------------------------------------------~~i~~~l------------ 142 (472)
T PRK03003 118 ADAVLFVVDATVGATATD-------------------------------------------EAVARVL------------ 142 (472)
T ss_pred CCEEEEEEECCCCCCHHH-------------------------------------------HHHHHHH------------
Confidence 777777777654321100 0001111
Q ss_pred ccCCCHHHHHHHHhccccccceEEEeecCCCCChh-hHHHHh--cCCCEEEeccccccchHHHHHHHHHHhC
Q 018394 177 REDATVDDLIDVIEGNRKYMKCVYVYNKIDVIGID-DVDKLA--RQPNSVVISCNLKLNLDRLLARMWEEMG 245 (356)
Q Consensus 177 thd~~~~~~~~~i~~~~~~~p~i~v~NK~Dl~~~~-~~~~l~--~~~~~i~iSa~~~~~l~~L~~~i~~~l~ 245 (356)
. ...+|+++|+||+|+...+ +...+. .....+++||++|.|+++|.+.+.+.+.
T Consensus 143 -------------~--~~~~piilV~NK~Dl~~~~~~~~~~~~~g~~~~~~iSA~~g~gi~eL~~~i~~~l~ 199 (472)
T PRK03003 143 -------------R--RSGKPVILAANKVDDERGEADAAALWSLGLGEPHPVSALHGRGVGDLLDAVLAALP 199 (472)
T ss_pred -------------H--HcCCCEEEEEECccCCccchhhHHHHhcCCCCeEEEEcCCCCCcHHHHHHHHhhcc
Confidence 1 1136999999999986422 222222 2334689999999999999999987663
No 400
>COG4138 BtuD ABC-type cobalamin transport system, ATPase component [Coenzyme metabolism]
Probab=99.67 E-value=4.2e-16 Score=132.99 Aligned_cols=152 Identities=18% Similarity=0.202 Sum_probs=108.0
Q ss_pred CCCCeEEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCccccccccccccceEEEECCEeecccCccccccccccCcccc
Q 018394 8 AGEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRG 87 (356)
Q Consensus 8 ~~~s~~v~~~~g~~v~LvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~~D~pGl~~~~~~~~~~~ 87 (356)
...|..+.. |+++-+|||||||||||+..|+|+.+ .+|+|.+.|.+++-..+..+.+..
T Consensus 16 ~plS~qv~a--Ge~~HliGPNGaGKSTLLA~lAGm~~------------~sGsi~~~G~~l~~~~~~eLArhR------- 74 (248)
T COG4138 16 GPLSGEVRA--GEILHLVGPNGAGKSTLLARMAGMTS------------GSGSIQFAGQPLEAWSATELARHR------- 74 (248)
T ss_pred ccccccccc--ceEEEEECCCCccHHHHHHHHhCCCC------------CCceEEECCcchhHHhHhHHHHHH-------
Confidence 345667777 88999999999999999999999975 489999999998876655443211
Q ss_pred ccccccccchhHHHHH---HhcCChH-HHHHHHHHHHHHccC--ccccccCcccccceecccee----------------
Q 018394 88 RQVIAVSKSSDIVLMV---LDASKSE-GHRQILTKELEAVGL--RLNKRPPQIYFKKKKTGGIS---------------- 145 (356)
Q Consensus 88 ~~~~~~~~~~d~i~~v---~d~~~~~-~~~~~i~~~L~~~~i--~l~~~~~~lS~g~~qr~~ia---------------- 145 (356)
..++.-+.+-..+.| +....+. .....+..+...+++ ++.+...+||+|+.||+-+|
T Consensus 75 -AYLsQqq~p~f~mpV~~YL~L~qP~~~~a~~i~~i~~~L~l~DKL~Rs~~qLSGGEWQRVRLAav~LQv~Pd~NP~~~L 153 (248)
T COG4138 75 -AYLSQQQTPPFAMPVWHYLTLHQPDKTRTELLNDVAGALALDDKLGRSTNQLSGGEWQRVRLAAVVLQITPDANPAGQL 153 (248)
T ss_pred -HHHhhccCCcchhhhhhhhhhcCchHHHHHHHHHHHhhhcccchhhhhhhhcCcccceeeEEeEEEEEecCCCCcccee
Confidence 111111112222211 2222222 223345566666777 78889999999999999887
Q ss_pred eeecCCCCCCCHHH---HHHHHHHhc-ccCcEEEEccCCC
Q 018394 146 FNSTLPLTHVDEKL---CYQILHEYK-IHNAEVLFREDAT 181 (356)
Q Consensus 146 l~~DEp~~~LD~~~---~~~il~~l~-~~~~~i~~thd~~ 181 (356)
+++|||.++||... ...++..+. .+.++||.+||.+
T Consensus 154 LllDEP~~~LDvAQ~~aLdrll~~~c~~G~~vims~HDLN 193 (248)
T COG4138 154 LLLDEPMNSLDVAQQSALDRLLSALCQQGLAIVMSSHDLN 193 (248)
T ss_pred EEecCCCcchhHHHHHHHHHHHHHHHhCCcEEEEeccchh
Confidence 88999999999875 566777776 4559999999975
No 401
>PLN03140 ABC transporter G family member; Provisional
Probab=99.67 E-value=5.7e-16 Score=172.73 Aligned_cols=157 Identities=15% Similarity=0.104 Sum_probs=109.4
Q ss_pred CCCCeEEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCccccccccccccceEEEECCEeecccCccccccccccCcccc
Q 018394 8 AGEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRG 87 (356)
Q Consensus 8 ~~~s~~v~~~~g~~v~LvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~~D~pGl~~~~~~~~~~~ 87 (356)
+++|+.+.+ |+.++|+|||||||||||++|+|...+ | +..|.+.++|.+....+ .....++.
T Consensus 897 ~~vs~~i~~--Gel~aL~G~sGaGKTTLL~~LaG~~~~-----g----~~~G~I~inG~~~~~~~-------~~~~igyv 958 (1470)
T PLN03140 897 REVTGAFRP--GVLTALMGVSGAGKTTLMDVLAGRKTG-----G----YIEGDIRISGFPKKQET-------FARISGYC 958 (1470)
T ss_pred eCcEEEEEC--CeEEEEECCCCCCHHHHHHHHcCCCCC-----C----cccceEEECCccCChHH-------hhhheEEE
Confidence 489999999 889999999999999999999998532 1 25799999997643110 11123444
Q ss_pred cccccccc---chhHHHHHHhcC-----ChHHHHHHHHHHHHHccC--cccccc-----Ccccccceecccee-------
Q 018394 88 RQVIAVSK---SSDIVLMVLDAS-----KSEGHRQILTKELEAVGL--RLNKRP-----PQIYFKKKKTGGIS------- 145 (356)
Q Consensus 88 ~~~~~~~~---~~d~i~~v~d~~-----~~~~~~~~i~~~L~~~~i--~l~~~~-----~~lS~g~~qr~~ia------- 145 (356)
.|....+. ..+.+.+..... ...+..+.+++.|+.+++ ..+..+ ..||+||+||+.|+
T Consensus 959 ~Q~d~~~~~lTV~E~L~~~a~lr~~~~~~~~~~~~~v~~vl~~lgL~~~~~~~vg~~~~~~LSgGerkRvsIa~aL~~~P 1038 (1470)
T PLN03140 959 EQNDIHSPQVTVRESLIYSAFLRLPKEVSKEEKMMFVDEVMELVELDNLKDAIVGLPGVTGLSTEQRKRLTIAVELVANP 1038 (1470)
T ss_pred ccccccCCCCcHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHCCChhHhCCccCCCCCCCcCHHHHHHHHHHHHHhhCC
Confidence 44332222 244444432211 112234567889999998 455554 58999999999998
Q ss_pred --eeecCCCCCCCHHHHHHHHHHhc----ccCcEEEEccCCCH
Q 018394 146 --FNSTLPLTHVDEKLCYQILHEYK----IHNAEVLFREDATV 182 (356)
Q Consensus 146 --l~~DEp~~~LD~~~~~~il~~l~----~~~~~i~~thd~~~ 182 (356)
+++||||++||......+++.++ .+.++|+++|+.+.
T Consensus 1039 ~lL~LDEPTsgLD~~~a~~v~~~L~~l~~~g~tVI~t~Hq~~~ 1081 (1470)
T PLN03140 1039 SIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSI 1081 (1470)
T ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCH
Confidence 99999999999988655554443 34599999999874
No 402
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.66 E-value=3e-16 Score=134.85 Aligned_cols=116 Identities=21% Similarity=0.246 Sum_probs=84.5
Q ss_pred CCCCeEEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCccccccccccccceEEEECCEeecccCccccccccccCcccc
Q 018394 8 AGEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRG 87 (356)
Q Consensus 8 ~~~s~~v~~~~g~~v~LvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~~D~pGl~~~~~~~~~~~ 87 (356)
.+++|++.+ |+.++|+|+||+|||||+++|+|...+ ..|.+.++|.++...+.. ......++.
T Consensus 16 ~~~~~~i~~--g~~~~i~G~nGsGKStll~~l~g~~~~-----------~~G~i~~~~~~~~~~~~~----~~~~~i~~~ 78 (157)
T cd00267 16 DNVSLTLKA--GEIVALVGPNGSGKSTLLRAIAGLLKP-----------TSGEILIDGKDIAKLPLE----ELRRRIGYV 78 (157)
T ss_pred eeeEEEEcC--CCEEEEECCCCCCHHHHHHHHhCCCCC-----------CccEEEECCEEcccCCHH----HHHhceEEE
Confidence 578899998 789999999999999999999999765 789999999765422100 000001111
Q ss_pred ccccccccchhHHHHHHhcCChHHHHHHHHHHHHHccCccccccCcccccceecccee---------eeecCCCCCCCHH
Q 018394 88 RQVIAVSKSSDIVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGIS---------FNSTLPLTHVDEK 158 (356)
Q Consensus 88 ~~~~~~~~~~d~i~~v~d~~~~~~~~~~i~~~L~~~~i~l~~~~~~lS~g~~qr~~ia---------l~~DEp~~~LD~~ 158 (356)
++||+|++||+.++ +++||||++||..
T Consensus 79 --------------------------------------------~qlS~G~~~r~~l~~~l~~~~~i~ilDEp~~~lD~~ 114 (157)
T cd00267 79 --------------------------------------------PQLSGGQRQRVALARALLLNPDLLLLDEPTSGLDPA 114 (157)
T ss_pred --------------------------------------------eeCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHH
Confidence 11788898888877 8999999999998
Q ss_pred HHHHH---HHHhcc-cCcEEEEccCCCHHH
Q 018394 159 LCYQI---LHEYKI-HNAEVLFREDATVDD 184 (356)
Q Consensus 159 ~~~~i---l~~l~~-~~~~i~~thd~~~~~ 184 (356)
....+ +.++.. +.+++++||+.....
T Consensus 115 ~~~~l~~~l~~~~~~~~tii~~sh~~~~~~ 144 (157)
T cd00267 115 SRERLLELLRELAEEGRTVIIVTHDPELAE 144 (157)
T ss_pred HHHHHHHHHHHHHHCCCEEEEEeCCHHHHH
Confidence 75544 444433 358999999976544
No 403
>COG4167 SapF ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=99.66 E-value=7.5e-16 Score=132.32 Aligned_cols=180 Identities=21% Similarity=0.198 Sum_probs=129.3
Q ss_pred CCCCeEEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCccccccccccccceEEEECCEeecccCccccccccccCcccc
Q 018394 8 AGEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRG 87 (356)
Q Consensus 8 ~~~s~~v~~~~g~~v~LvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~~D~pGl~~~~~~~~~~~ 87 (356)
+.+||.+++ +..+|++|.||||||||.++|+|...| ++|.+.+||.++..-|-. .....+.+.
T Consensus 30 ~~vSFtL~~--~QTlaiIG~NGSGKSTLakMlaGmi~P-----------TsG~il~n~~~L~~~Dy~----~R~k~IRMi 92 (267)
T COG4167 30 KPVSFTLRE--GQTLAIIGENGSGKSTLAKMLAGMIEP-----------TSGEILINDHPLHFGDYS----FRSKRIRMI 92 (267)
T ss_pred cceEEEecC--CcEEEEEccCCCcHhHHHHHHhcccCC-----------CCceEEECCccccccchH----hhhhheeee
Confidence 578999999 889999999999999999999999887 899999999998876632 222334445
Q ss_pred ccccccccchhH-HHHHHhc-------CChHHHHHHHHHHHHHccC---ccccccCcccccceecccee---------ee
Q 018394 88 RQVIAVSKSSDI-VLMVLDA-------SKSEGHRQILTKELEAVGL---RLNKRPPQIYFKKKKTGGIS---------FN 147 (356)
Q Consensus 88 ~~~~~~~~~~d~-i~~v~d~-------~~~~~~~~~i~~~L~~~~i---~l~~~~~~lS~g~~qr~~ia---------l~ 147 (356)
+|.+...-+..+ +-.++|+ ..+....+++.+-|..+|+ ..+-++..|+.||+||+++| ++
T Consensus 93 FQDpnts~NPRl~iGqiLd~PL~l~T~~~~~~R~~~i~~TL~~VGL~Pdhan~~~~~la~~QKQRVaLARALIL~P~iII 172 (267)
T COG4167 93 FQDPNTSLNPRLRIGQILDFPLRLNTDLEPEQRRKQIFETLRMVGLLPDHANYYPHMLAPGQKQRVALARALILRPKIII 172 (267)
T ss_pred ecCCccccChhhhhhhHhcchhhhcccCChHHHHHHHHHHHHHhccCccccccchhhcCchhHHHHHHHHHHhcCCcEEE
Confidence 554432222111 1122232 2334456678888999999 57778999999999999998 88
Q ss_pred ecCCCCCCCHHHHHHHHHHh---c--ccCcEEEEccCCCHHHHHHHHhccccccceEEEeecCCCCChhhH
Q 018394 148 STLPLTHVDEKLCYQILHEY---K--IHNAEVLFREDATVDDLIDVIEGNRKYMKCVYVYNKIDVIGIDDV 213 (356)
Q Consensus 148 ~DEp~~~LD~~~~~~il~~l---~--~~~~~i~~thd~~~~~~~~~i~~~~~~~p~i~v~NK~Dl~~~~~~ 213 (356)
+||.+++||.....++++.+ . .+-+.|+++.+..+..-+ .+.++|+...+.+...+-
T Consensus 173 aDeAl~~LD~smrsQl~NL~LeLQek~GiSyiYV~QhlG~iKHi---------~D~viVM~EG~vvE~G~t 234 (267)
T COG4167 173 ADEALASLDMSMRSQLINLMLELQEKQGISYIYVTQHIGMIKHI---------SDQVLVMHEGEVVERGST 234 (267)
T ss_pred ehhhhhhccHHHHHHHHHHHHHHHHHhCceEEEEechhhHhhhh---------cccEEEEecCceeecCCh
Confidence 99999999998766665543 3 233678888776543322 266888888887644433
No 404
>KOG1423 consensus Ras-like GTPase ERA [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]
Probab=99.66 E-value=1.6e-16 Score=145.80 Aligned_cols=60 Identities=38% Similarity=0.521 Sum_probs=56.5
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcCC-CCccccccccccccceEEEECCEeecccCccccccc
Q 018394 20 GRVALIGFPSVGKSTLLTLLTGTH-SEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEG 79 (356)
Q Consensus 20 ~~v~LvG~~gaGKSTLln~L~g~~-~~vs~~p~TT~~~~~G~i~~~g~~i~~~D~pGl~~~ 79 (356)
..||+||+||+|||||-|.+.|.. ++||..+.||+..+.|.++-+..++.++||||++..
T Consensus 73 L~vavIG~PNvGKStLtN~mig~kv~~vS~K~~TTr~~ilgi~ts~eTQlvf~DTPGlvs~ 133 (379)
T KOG1423|consen 73 LYVAVIGAPNVGKSTLTNQMIGQKVSAVSRKVHTTRHRILGIITSGETQLVFYDTPGLVSK 133 (379)
T ss_pred EEEEEEcCCCcchhhhhhHhhCCccccccccccceeeeeeEEEecCceEEEEecCCccccc
Confidence 479999999999999999999998 689999999999999999999999999999999864
No 405
>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]
Probab=99.66 E-value=3.3e-16 Score=152.59 Aligned_cols=158 Identities=14% Similarity=0.171 Sum_probs=113.2
Q ss_pred CCCCeEEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCccccccccccccceEEEECCEeecccCccccccccccCcccc
Q 018394 8 AGEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRG 87 (356)
Q Consensus 8 ~~~s~~v~~~~g~~v~LvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~~D~pGl~~~~~~~~~~~ 87 (356)
+++||.+.+ |+.+|||||+|||||||.++|.|...| ..|.+.+||.++...|... ..+.+|+.
T Consensus 353 ~~isF~l~~--G~~lgIIGPSgSGKSTLaR~lvG~w~p-----------~~G~VRLDga~l~qWd~e~----lG~hiGYL 415 (580)
T COG4618 353 KGISFALQA--GEALGIIGPSGSGKSTLARLLVGIWPP-----------TSGSVRLDGADLRQWDREQ----LGRHIGYL 415 (580)
T ss_pred ecceeEecC--CceEEEECCCCccHHHHHHHHHccccc-----------CCCcEEecchhhhcCCHHH----hccccCcC
Confidence 589999999 889999999999999999999999887 8999999999998888433 23456777
Q ss_pred ccccccccc--hhHHHHHHhcCChHHHHHHHHHHHHHccC-------------ccccccCcccccceecccee-------
Q 018394 88 RQVIAVSKS--SDIVLMVLDASKSEGHRQILTKELEAVGL-------------RLNKRPPQIYFKKKKTGGIS------- 145 (356)
Q Consensus 88 ~~~~~~~~~--~d~i~~v~d~~~~~~~~~~i~~~L~~~~i-------------~l~~~~~~lS~g~~qr~~ia------- 145 (356)
.|....|.. +++|.-+-+. .+.+.+-+.....+. .+...-..||+||+||.++|
T Consensus 416 PQdVeLF~GTIaeNIaRf~~~----~d~~kIieAA~lAgvHelIl~lP~GYdT~iG~~G~~LSgGQRQRIaLARAlYG~P 491 (580)
T COG4618 416 PQDVELFDGTIAENIARFGEE----ADPEKVIEAARLAGVHELILRLPQGYDTRIGEGGATLSGGQRQRIALARALYGDP 491 (580)
T ss_pred cccceecCCcHHHHHHhcccc----CCHHHHHHHHHHcChHHHHHhCcCCccCccCCCCCCCCchHHHHHHHHHHHcCCC
Confidence 777666654 4444322211 112222222222222 23333467999999999998
Q ss_pred --eeecCCCCCCCHHH---HHHHHHHhc-ccCcEEEEccCCCHHHHH
Q 018394 146 --FNSTLPLTHVDEKL---CYQILHEYK-IHNAEVLFREDATVDDLI 186 (356)
Q Consensus 146 --l~~DEp~~~LD~~~---~~~il~~l~-~~~~~i~~thd~~~~~~~ 186 (356)
+++|||-++||.+. +.+.+...+ .+.++|+++|..+....+
T Consensus 492 ~lvVLDEPNsNLD~~GE~AL~~Ai~~~k~rG~~vvviaHRPs~L~~~ 538 (580)
T COG4618 492 FLVVLDEPNSNLDSEGEAALAAAILAAKARGGTVVVIAHRPSALASV 538 (580)
T ss_pred cEEEecCCCCCcchhHHHHHHHHHHHHHHcCCEEEEEecCHHHHhhc
Confidence 99999999999876 444455555 455899999998765543
No 406
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=99.66 E-value=1.4e-16 Score=167.43 Aligned_cols=157 Identities=25% Similarity=0.302 Sum_probs=104.7
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHcCCC-CccccccccccccceEEEECCEeecccCccccccccccCcccc----cccccc
Q 018394 19 HGRVALIGFPSVGKSTLLTLLTGTHS-EAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRG----RQVIAV 93 (356)
Q Consensus 19 g~~v~LvG~~gaGKSTLln~L~g~~~-~vs~~p~TT~~~~~G~i~~~g~~i~~~D~pGl~~~~~~~~~~~----~~~~~~ 93 (356)
...|+|+|+||||||||+|+|++... .++++||||+++....+.++|.++.++||||+.+......+.. ......
T Consensus 450 ~~kI~ivG~~nvGKSSLin~l~~~~~~~v~~~~gtT~d~~~~~~~~~~~~~~liDTaG~~~~~~~~~~~e~~~~~r~~~~ 529 (712)
T PRK09518 450 LRRVALVGRPNVGKSSLLNQLTHEERAVVNDLAGTTRDPVDEIVEIDGEDWLFIDTAGIKRRQHKLTGAEYYSSLRTQAA 529 (712)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCccccccCCCCCCCcCcceeEEEECCCEEEEEECCCcccCcccchhHHHHHHHHHHHH
Confidence 46999999999999999999999874 5899999999999999999999999999999864322111000 001112
Q ss_pred ccchhHHHHHHhcCChHHHHHHHHHHHHHccCccccccCcccccceeccceeeeecCCCCCCCHHHHHHHHHHhcccCcE
Q 018394 94 SKSSDIVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNAE 173 (356)
Q Consensus 94 ~~~~d~i~~v~d~~~~~~~~~~i~~~L~~~~i~l~~~~~~lS~g~~qr~~ial~~DEp~~~LD~~~~~~il~~l~~~~~~ 173 (356)
++.+|++++|+|+.......+ . .++
T Consensus 530 i~~advvilViDat~~~s~~~---------------------------------------------~-~i~--------- 554 (712)
T PRK09518 530 IERSELALFLFDASQPISEQD---------------------------------------------L-KVM--------- 554 (712)
T ss_pred hhcCCEEEEEEECCCCCCHHH---------------------------------------------H-HHH---------
Confidence 345555555555543321110 0 000
Q ss_pred EEEccCCCHHHHHHHHhccccccceEEEeecCCCCChhhHHHH----h------cCCCEEEeccccccchHHHHHHHHHH
Q 018394 174 VLFREDATVDDLIDVIEGNRKYMKCVYVYNKIDVIGIDDVDKL----A------RQPNSVVISCNLKLNLDRLLARMWEE 243 (356)
Q Consensus 174 i~~thd~~~~~~~~~i~~~~~~~p~i~v~NK~Dl~~~~~~~~l----~------~~~~~i~iSa~~~~~l~~L~~~i~~~ 243 (356)
..+. ...+|+++|+||+|+...+..+.+ . .+.+++++||++|.|+++|.+.+.+.
T Consensus 555 -------------~~~~--~~~~piIiV~NK~DL~~~~~~~~~~~~~~~~l~~~~~~~ii~iSAktg~gv~~L~~~i~~~ 619 (712)
T PRK09518 555 -------------SMAV--DAGRALVLVFNKWDLMDEFRRQRLERLWKTEFDRVTWARRVNLSAKTGWHTNRLAPAMQEA 619 (712)
T ss_pred -------------HHHH--HcCCCEEEEEEchhcCChhHHHHHHHHHHHhccCCCCCCEEEEECCCCCCHHHHHHHHHHH
Confidence 1111 113699999999999754322111 1 12457899999999999998887665
Q ss_pred hC
Q 018394 244 MG 245 (356)
Q Consensus 244 l~ 245 (356)
+.
T Consensus 620 ~~ 621 (712)
T PRK09518 620 LE 621 (712)
T ss_pred HH
Confidence 43
No 407
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein.
Probab=99.65 E-value=8.4e-16 Score=171.49 Aligned_cols=160 Identities=11% Similarity=0.041 Sum_probs=107.2
Q ss_pred CCCCeEEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCccccccccccccceEEEECCEeecccCccccccccccCcccc
Q 018394 8 AGEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRG 87 (356)
Q Consensus 8 ~~~s~~v~~~~g~~v~LvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~~D~pGl~~~~~~~~~~~ 87 (356)
+++|+.+.+ |+.++|+||||||||||||+|+|....- ..+.+|.|.++|.++.... . ......++.
T Consensus 78 ~~vs~~i~~--Ge~~aIlG~nGsGKSTLLk~LaG~~~~~-------~~~~~G~I~~~G~~~~~~~-~----~~r~~i~yv 143 (1394)
T TIGR00956 78 KPMDGLIKP--GELTVVLGRPGSGCSTLLKTIASNTDGF-------HIGVEGVITYDGITPEEIK-K----HYRGDVVYN 143 (1394)
T ss_pred eCCEEEEEC--CEEEEEECCCCCCHHHHHHHHhCCCCCC-------CCCceeEEEECCEehHHHH-h----hcCceeEEe
Confidence 589999999 8899999999999999999999985210 1137899999998764221 0 011123333
Q ss_pred ccccccc---cchhHHHHHHhcC---------ChHHHHHH-HHHHHHHccC--cccc-----ccCcccccceecccee--
Q 018394 88 RQVIAVS---KSSDIVLMVLDAS---------KSEGHRQI-LTKELEAVGL--RLNK-----RPPQIYFKKKKTGGIS-- 145 (356)
Q Consensus 88 ~~~~~~~---~~~d~i~~v~d~~---------~~~~~~~~-i~~~L~~~~i--~l~~-----~~~~lS~g~~qr~~ia-- 145 (356)
.|....+ ...+.+.+..... ...+..+. .+..|+.+|+ ..++ .+..||+||+||+.||
T Consensus 144 ~Q~d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGerkRvsIA~a 223 (1394)
T TIGR00956 144 AETDVHFPHLTVGETLDFAARCKTPQNRPDGVSREEYAKHIADVYMATYGLSHTRNTKVGNDFVRGVSGGERKRVSIAEA 223 (1394)
T ss_pred ccccccCCCCCHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHHHHHcCcccccCceeCCCcCCCCCcccchHHHHHHH
Confidence 4432222 3345554443321 11111222 3567888898 3443 3567999999999998
Q ss_pred -------eeecCCCCCCCHHHHHHHHH---Hhcc--cCcEEEEccCCC
Q 018394 146 -------FNSTLPLTHVDEKLCYQILH---EYKI--HNAEVLFREDAT 181 (356)
Q Consensus 146 -------l~~DEp~~~LD~~~~~~il~---~l~~--~~~~i~~thd~~ 181 (356)
+++||||++||.....++++ .+.. +.++++++|+..
T Consensus 224 L~~~p~vlllDEPTsgLD~~~~~~i~~~L~~la~~~g~tvii~~Hq~~ 271 (1394)
T TIGR00956 224 SLGGAKIQCWDNATRGLDSATALEFIRALKTSANILDTTPLVAIYQCS 271 (1394)
T ss_pred HHhCCCEEEEeCCCCCcCHHHHHHHHHHHHHHHHhcCCEEEEEecCCC
Confidence 89999999999988555544 4432 458999999964
No 408
>PRK00093 GTP-binding protein Der; Reviewed
Probab=99.65 E-value=1.2e-16 Score=159.34 Aligned_cols=155 Identities=26% Similarity=0.276 Sum_probs=104.9
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcCCC-CccccccccccccceEEEECCEeecccCcccccccccc-Cccccccccccccch
Q 018394 20 GRVALIGFPSVGKSTLLTLLTGTHS-EAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASE-GKGRGRQVIAVSKSS 97 (356)
Q Consensus 20 ~~v~LvG~~gaGKSTLln~L~g~~~-~vs~~p~TT~~~~~G~i~~~g~~i~~~D~pGl~~~~~~-~~~~~~~~~~~~~~~ 97 (356)
..|+|+|.||||||||+|.|+|... .++++|++|++...+.+.++|..+.++||||+...... ......+....+..+
T Consensus 2 ~~I~ivG~~~vGKStL~n~l~~~~~~~v~~~~~~t~d~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~~~~~~~~~~~~a 81 (435)
T PRK00093 2 PVVAIVGRPNVGKSTLFNRLTGKRDAIVADTPGVTRDRIYGEAEWLGREFILIDTGGIEPDDDGFEKQIREQAELAIEEA 81 (435)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCceeeCCCCCCcccceEEEEEECCcEEEEEECCCCCCcchhHHHHHHHHHHHHHHhC
Confidence 3799999999999999999999874 68999999999999999999999999999998541110 000111222234556
Q ss_pred hHHHHHHhcCChHHHHHHHHHHHHHccCccccccCcccccceeccceeeeecCCCCCCCHHHHHHHHHHhcccCcEEEEc
Q 018394 98 DIVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNAEVLFR 177 (356)
Q Consensus 98 d~i~~v~d~~~~~~~~~~i~~~L~~~~i~l~~~~~~lS~g~~qr~~ial~~DEp~~~LD~~~~~~il~~l~~~~~~i~~t 177 (356)
|++++++|+.......+ . .+.++++.
T Consensus 82 d~il~vvd~~~~~~~~~------------------------------------------~-~~~~~l~~----------- 107 (435)
T PRK00093 82 DVILFVVDGRAGLTPAD------------------------------------------E-EIAKILRK----------- 107 (435)
T ss_pred CEEEEEEECCCCCCHHH------------------------------------------H-HHHHHHHH-----------
Confidence 66666666543211110 0 01111111
Q ss_pred cCCCHHHHHHHHhccccccceEEEeecCCCCCh-hhHHHHhc--CCCEEEeccccccchHHHHHHHHHHh
Q 018394 178 EDATVDDLIDVIEGNRKYMKCVYVYNKIDVIGI-DDVDKLAR--QPNSVVISCNLKLNLDRLLARMWEEM 244 (356)
Q Consensus 178 hd~~~~~~~~~i~~~~~~~p~i~v~NK~Dl~~~-~~~~~l~~--~~~~i~iSa~~~~~l~~L~~~i~~~l 244 (356)
..+|+++|+||+|+... ....++.. ...++++||++|.|+++|.+.+.+.+
T Consensus 108 ----------------~~~piilv~NK~D~~~~~~~~~~~~~lg~~~~~~iSa~~g~gv~~l~~~I~~~~ 161 (435)
T PRK00093 108 ----------------SNKPVILVVNKVDGPDEEADAYEFYSLGLGEPYPISAEHGRGIGDLLDAILEEL 161 (435)
T ss_pred ----------------cCCcEEEEEECccCccchhhHHHHHhcCCCCCEEEEeeCCCCHHHHHHHHHhhC
Confidence 13599999999997642 22333332 33579999999999999999998743
No 409
>PLN03140 ABC transporter G family member; Provisional
Probab=99.64 E-value=1.9e-15 Score=168.60 Aligned_cols=157 Identities=18% Similarity=0.120 Sum_probs=106.6
Q ss_pred CCCCeEEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCccccccccccccceEEEECCEeecccCccccccccccCcccc
Q 018394 8 AGEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRG 87 (356)
Q Consensus 8 ~~~s~~v~~~~g~~v~LvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~~D~pGl~~~~~~~~~~~ 87 (356)
+++|+.+.+ |+.++|+|||||||||||++|+|...+- ....|.|.++|.++.-... ....++.
T Consensus 182 ~~vs~~i~~--Ge~~~llGpnGSGKSTLLk~LaG~l~~~--------~~~~G~I~~nG~~~~~~~~-------~~~i~yv 244 (1470)
T PLN03140 182 KDASGIIKP--SRMTLLLGPPSSGKTTLLLALAGKLDPS--------LKVSGEITYNGYRLNEFVP-------RKTSAYI 244 (1470)
T ss_pred cCCeEEEeC--CeEEEEEcCCCCCHHHHHHHHhCCCCCC--------CcceeEEEECCEechhhcc-------cceeEEe
Confidence 589999999 8899999999999999999999997540 0138999999988743221 1122333
Q ss_pred ccccccc---cchhHHHHHHhcCC------------hHH---------H---------------HHHHHHHHHHccC--c
Q 018394 88 RQVIAVS---KSSDIVLMVLDASK------------SEG---------H---------------RQILTKELEAVGL--R 126 (356)
Q Consensus 88 ~~~~~~~---~~~d~i~~v~d~~~------------~~~---------~---------------~~~i~~~L~~~~i--~ 126 (356)
.|....+ ...+.+.+...... ..+ + ...+...|+.+|| .
T Consensus 245 ~Q~d~~~~~lTV~EtL~f~a~~~~~~~~~~~~~~~~~~ek~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~L~~lGL~~~ 324 (1470)
T PLN03140 245 SQNDVHVGVMTVKETLDFSARCQGVGTRYDLLSELARREKDAGIFPEAEVDLFMKATAMEGVKSSLITDYTLKILGLDIC 324 (1470)
T ss_pred cccccCCCcCcHHHHHHHHHHhcCCCCcccchhhcCHHHHhccCCCchhhHHHHHHhhhhcchhhHHHHHHHHHcCCccc
Confidence 3332222 23444444332110 000 0 0124567888888 2
Q ss_pred c-----ccccCcccccceecccee---------eeecCCCCCCCHHHHHHHHHHhc---c--cCcEEEEccCCC
Q 018394 127 L-----NKRPPQIYFKKKKTGGIS---------FNSTLPLTHVDEKLCYQILHEYK---I--HNAEVLFREDAT 181 (356)
Q Consensus 127 l-----~~~~~~lS~g~~qr~~ia---------l~~DEp~~~LD~~~~~~il~~l~---~--~~~~i~~thd~~ 181 (356)
. +..+..+|+||+||+.|+ +++||||++||.....++++.++ . +.|+++++|+..
T Consensus 325 ~~t~vg~~~~rglSGGerkRVsia~aL~~~p~vlllDEPTsGLDs~t~~~i~~~Lr~la~~~g~Tviis~Hqp~ 398 (1470)
T PLN03140 325 KDTIVGDEMIRGISGGQKKRVTTGEMIVGPTKTLFMDEISTGLDSSTTYQIVKCLQQIVHLTEATVLMSLLQPA 398 (1470)
T ss_pred cCceeCCccccCCCcccceeeeehhhhcCCCcEEEEeCCCcCccHHHHHHHHHHHHHHHHhcCCEEEEEecCCC
Confidence 2 456679999999999998 99999999999998666555443 2 458999999864
No 410
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=99.64 E-value=1.6e-16 Score=133.02 Aligned_cols=121 Identities=21% Similarity=0.229 Sum_probs=83.6
Q ss_pred CCCCeEEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCccccccccccccceEEEECCEeecccCccccccccccCcccc
Q 018394 8 AGEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRG 87 (356)
Q Consensus 8 ~~~s~~v~~~~g~~v~LvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~~D~pGl~~~~~~~~~~~ 87 (356)
++++|++.+ |++++|+|+||||||||+++|+|...+ ..|.+.++|.++...+..-+ ....+..
T Consensus 2 ~~v~~~i~~--g~~~~i~G~nGsGKStLl~~l~g~~~~-----------~~G~i~~~~~~~~~~~~~~~----~~~i~~~ 64 (137)
T PF00005_consen 2 KNVSLEIKP--GEIVAIVGPNGSGKSTLLKALAGLLPP-----------DSGSILINGKDISDIDIEEL----RRRIGYV 64 (137)
T ss_dssp EEEEEEEET--TSEEEEEESTTSSHHHHHHHHTTSSHE-----------SEEEEEETTEEGTTSHHHHH----HHTEEEE
T ss_pred CceEEEEcC--CCEEEEEccCCCccccceeeecccccc-----------cccccccccccccccccccc----ccccccc
Confidence 367899999 889999999999999999999999866 79999999998865222111 1122222
Q ss_pred ccccccccchhHHHHHHhcCChHHHHHHHHHHHHHccC------ccccccCcccccceecccee---------eeecCCC
Q 018394 88 RQVIAVSKSSDIVLMVLDASKSEGHRQILTKELEAVGL------RLNKRPPQIYFKKKKTGGIS---------FNSTLPL 152 (356)
Q Consensus 88 ~~~~~~~~~~d~i~~v~d~~~~~~~~~~i~~~L~~~~i------~l~~~~~~lS~g~~qr~~ia---------l~~DEp~ 152 (356)
.+....+....+... .....+.+.++.+++ .++++...||+|++||+.++ +++||||
T Consensus 65 ~~~~~~~~~~tv~~~--------~~~~~~~~~l~~l~~~~~~~~~~~~~~~~LS~Ge~~rl~la~al~~~~~llllDEPt 136 (137)
T PF00005_consen 65 PQDPQLFPGLTVREN--------ESDERIEEVLKKLGLEDLLDRKIGQRASSLSGGEKQRLALARALLKNPKLLLLDEPT 136 (137)
T ss_dssp ESSHCHHTTSBHHHH--------HHHHHHHHHHHHTTHGGGTGSBGTSCGGGSCHHHHHHHHHHHHHHTTSSEEEEESTT
T ss_pred ccccccccccccccc--------cccccccccccccccccccccccccccchhhHHHHHHHHHHHHHHcCCCEEEEeCCC
Confidence 222211221111111 233456777777776 33444599999999999998 9999999
Q ss_pred C
Q 018394 153 T 153 (356)
Q Consensus 153 ~ 153 (356)
+
T Consensus 137 ~ 137 (137)
T PF00005_consen 137 N 137 (137)
T ss_dssp T
T ss_pred C
Confidence 5
No 411
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=99.64 E-value=1.9e-16 Score=166.46 Aligned_cols=156 Identities=23% Similarity=0.252 Sum_probs=107.4
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHcCC-CCccccccccccccceEEEECCEeecccCccccccccccCc--ccccccccccc
Q 018394 19 HGRVALIGFPSVGKSTLLTLLTGTH-SEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGK--GRGRQVIAVSK 95 (356)
Q Consensus 19 g~~v~LvG~~gaGKSTLln~L~g~~-~~vs~~p~TT~~~~~G~i~~~g~~i~~~D~pGl~~~~~~~~--~~~~~~~~~~~ 95 (356)
-..|+|+|.||||||||||+|+|.. +.++++||+|++...+...+++..+.++||||+.... ... ....+....++
T Consensus 275 ~~~V~IvG~~nvGKSSL~n~l~~~~~~iv~~~pGvT~d~~~~~~~~~~~~~~liDT~G~~~~~-~~~~~~~~~~~~~~~~ 353 (712)
T PRK09518 275 VGVVAIVGRPNVGKSTLVNRILGRREAVVEDTPGVTRDRVSYDAEWAGTDFKLVDTGGWEADV-EGIDSAIASQAQIAVS 353 (712)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCCceeecCCCCeeEEEEEEEEEECCEEEEEEeCCCcCCCC-ccHHHHHHHHHHHHHH
Confidence 3589999999999999999999986 4689999999999999999999999999999975311 110 11122223345
Q ss_pred chhHHHHHHhcCChHHHHHHHHHHHHHccCccccccCcccccceeccceeeeecCCCCCCCHHHHHHHHHHhcccCcEEE
Q 018394 96 SSDIVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNAEVL 175 (356)
Q Consensus 96 ~~d~i~~v~d~~~~~~~~~~i~~~L~~~~i~l~~~~~~lS~g~~qr~~ial~~DEp~~~LD~~~~~~il~~l~~~~~~i~ 175 (356)
.+|++++|+|+.......+. .+
T Consensus 354 ~aD~iL~VvDa~~~~~~~d~----------------------------------------------~i------------ 375 (712)
T PRK09518 354 LADAVVFVVDGQVGLTSTDE----------------------------------------------RI------------ 375 (712)
T ss_pred hCCEEEEEEECCCCCCHHHH----------------------------------------------HH------------
Confidence 67777777776532111100 00
Q ss_pred EccCCCHHHHHHHHhccccccceEEEeecCCCCChh-hHHHHh--cCCCEEEeccccccchHHHHHHHHHHhC
Q 018394 176 FREDATVDDLIDVIEGNRKYMKCVYVYNKIDVIGID-DVDKLA--RQPNSVVISCNLKLNLDRLLARMWEEMG 245 (356)
Q Consensus 176 ~thd~~~~~~~~~i~~~~~~~p~i~v~NK~Dl~~~~-~~~~l~--~~~~~i~iSa~~~~~l~~L~~~i~~~l~ 245 (356)
++.+. ...+|+++|+||+|+.... ...... ....++++||++|.|+++|++.+.+.+.
T Consensus 376 ----------~~~Lr--~~~~pvIlV~NK~D~~~~~~~~~~~~~lg~~~~~~iSA~~g~GI~eLl~~i~~~l~ 436 (712)
T PRK09518 376 ----------VRMLR--RAGKPVVLAVNKIDDQASEYDAAEFWKLGLGEPYPISAMHGRGVGDLLDEALDSLK 436 (712)
T ss_pred ----------HHHHH--hcCCCEEEEEECcccccchhhHHHHHHcCCCCeEEEECCCCCCchHHHHHHHHhcc
Confidence 11111 1246999999999986432 222222 2345789999999999999999987764
No 412
>cd04171 SelB SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo
Probab=99.64 E-value=4.2e-16 Score=133.28 Aligned_cols=82 Identities=22% Similarity=0.304 Sum_probs=59.8
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcCCC---CccccccccccccceEEEEC-CEeecccCccccccccccCcccccccccccc
Q 018394 20 GRVALIGFPSVGKSTLLTLLTGTHS---EAASYEFTTLTCIPGIIHYN-DTKIQLLDLPGIIEGASEGKGRGRQVIAVSK 95 (356)
Q Consensus 20 ~~v~LvG~~gaGKSTLln~L~g~~~---~vs~~p~TT~~~~~G~i~~~-g~~i~~~D~pGl~~~~~~~~~~~~~~~~~~~ 95 (356)
..|+|+|++|||||||+|+|++... +....+++|++.....+.+. +..+.++||||..... ......+.
T Consensus 1 ~~i~i~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~DtpG~~~~~-------~~~~~~~~ 73 (164)
T cd04171 1 MIIGTAGHIDHGKTTLIKALTGIETDRLPEEKKRGITIDLGFAYLDLPSGKRLGFIDVPGHEKFI-------KNMLAGAG 73 (164)
T ss_pred CEEEEEecCCCCHHHHHHHHhCcccccchhhhccCceEEeeeEEEEecCCcEEEEEECCChHHHH-------HHHHhhhh
Confidence 3689999999999999999998542 12234788999888888887 8889999999963211 11222345
Q ss_pred chhHHHHHHhcCC
Q 018394 96 SSDIVLMVLDASK 108 (356)
Q Consensus 96 ~~d~i~~v~d~~~ 108 (356)
.+|++++|+|+..
T Consensus 74 ~ad~ii~V~d~~~ 86 (164)
T cd04171 74 GIDLVLLVVAADE 86 (164)
T ss_pred cCCEEEEEEECCC
Confidence 6777777777654
No 413
>cd01895 EngA2 EngA2 subfamily. This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.62 E-value=9.6e-16 Score=131.77 Aligned_cols=59 Identities=36% Similarity=0.462 Sum_probs=53.0
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcCC-CCccccccccccccceEEEECCEeecccCcccccc
Q 018394 20 GRVALIGFPSVGKSTLLTLLTGTH-SEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIE 78 (356)
Q Consensus 20 ~~v~LvG~~gaGKSTLln~L~g~~-~~vs~~p~TT~~~~~G~i~~~g~~i~~~D~pGl~~ 78 (356)
..|+++|.+|+|||||+|+|++.. ...++.|+||++.....+..++.++.++||||+..
T Consensus 3 ~~i~i~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiDtpG~~~ 62 (174)
T cd01895 3 IRIAIIGRPNVGKSSLVNALLGEERVIVSDIAGTTRDSIDVPFEYDGKKYTLIDTAGIRR 62 (174)
T ss_pred cEEEEEcCCCCCHHHHHHHHhCccceeccCCCCCccCceeeEEEECCeeEEEEECCCCcc
Confidence 479999999999999999999986 45788999999999899999999999999999753
No 414
>KOG0056 consensus Heavy metal exporter HMT1, ABC superfamily [Inorganic ion transport and metabolism]
Probab=99.62 E-value=5.2e-16 Score=150.23 Aligned_cols=180 Identities=16% Similarity=0.162 Sum_probs=119.0
Q ss_pred CCCCeEEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCccccccccccccceEEEECCEeecccCccccccccccCcccc
Q 018394 8 AGEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRG 87 (356)
Q Consensus 8 ~~~s~~v~~~~g~~v~LvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~~D~pGl~~~~~~~~~~~ 87 (356)
+++||.+.+ |..+|||||+|+||||+++.|....- .++|.|.++|++|..+-...++ ..+|.+
T Consensus 555 ~disF~v~p--GktvAlVG~SGaGKSTimRlLfRffd-----------v~sGsI~iDgqdIrnvt~~SLR----s~IGVV 617 (790)
T KOG0056|consen 555 SDISFTVQP--GKTVALVGPSGAGKSTIMRLLFRFFD-----------VNSGSITIDGQDIRNVTQSSLR----SSIGVV 617 (790)
T ss_pred ecceEEecC--CcEEEEECCCCCchhHHHHHHHHHhh-----------ccCceEEEcCchHHHHHHHHHH----HhcCcc
Confidence 689999999 88999999999999999999998763 3899999999999877544443 235555
Q ss_pred ccccccccchhHHHHHHhcCChHHHHHHHHHHHHHccC-------------ccccccCcccccceecccee---------
Q 018394 88 RQVIAVSKSSDIVLMVLDASKSEGHRQILTKELEAVGL-------------RLNKRPPQIYFKKKKTGGIS--------- 145 (356)
Q Consensus 88 ~~~~~~~~~~d~i~~v~d~~~~~~~~~~i~~~L~~~~i-------------~l~~~~~~lS~g~~qr~~ia--------- 145 (356)
+|....+.+ -|++-+.-..+....+.+.+.....+| +...+--+||||++||++||
T Consensus 618 PQDtvLFNd--TI~yNIryak~~AsneevyaAAkAA~IHdrIl~fPegY~t~VGERGLkLSGGEKQRVAiARtiLK~P~i 695 (790)
T KOG0056|consen 618 PQDTVLFND--TILYNIRYAKPSASNEEVYAAAKAAQIHDRILQFPEGYNTRVGERGLKLSGGEKQRVAIARTILKAPSI 695 (790)
T ss_pred cCcceeecc--eeeeheeecCCCCChHHHHHHHHHhhHHHHHhcCchhhhhhhhhcccccCCcchhhHHHHHHHhcCCcE
Confidence 554433332 122221111111111112222222221 33445568999999999998
Q ss_pred eeecCCCCCCCHHH---HHHHHHHhcccCcEEEEccCCCHHHHHHHHhccccccceEEEeecCCCCChhhHHHH
Q 018394 146 FNSTLPLTHVDEKL---CYQILHEYKIHNAEVLFREDATVDDLIDVIEGNRKYMKCVYVYNKIDVIGIDDVDKL 216 (356)
Q Consensus 146 l~~DEp~~~LD~~~---~~~il~~l~~~~~~i~~thd~~~~~~~~~i~~~~~~~p~i~v~NK~Dl~~~~~~~~l 216 (356)
+++||.|++||..+ ++..|..+..+.|.|++.|..+-. .+.+.|+|+.+.-+.....-+++
T Consensus 696 IlLDEATSALDT~tER~IQaaL~rlca~RTtIVvAHRLSTi----------vnAD~ILvi~~G~IvErG~HeeL 759 (790)
T KOG0056|consen 696 ILLDEATSALDTNTERAIQAALARLCANRTTIVVAHRLSTI----------VNADLILVISNGRIVERGRHEEL 759 (790)
T ss_pred EEEcchhhhcCCccHHHHHHHHHHHhcCCceEEEeeeehhe----------ecccEEEEEeCCeEeecCcHHHH
Confidence 89999999999655 666677777888888888876421 13366778777665544333443
No 415
>COG0218 Predicted GTPase [General function prediction only]
Probab=99.61 E-value=5.2e-16 Score=135.82 Aligned_cols=58 Identities=28% Similarity=0.360 Sum_probs=47.9
Q ss_pred ecCCcEEEEEcCCCCcHHHHHHHHHcCC--CCccccccccccccceEEEECCEeecccCcccc
Q 018394 16 KFGHGRVALIGFPSVGKSTLLTLLTGTH--SEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGI 76 (356)
Q Consensus 16 ~~~g~~v~LvG~~gaGKSTLln~L~g~~--~~vs~~p~TT~~~~~G~i~~~g~~i~~~D~pGl 76 (356)
.....-||++|++|||||||+|+|+|.. +.+|..||.|+.++- +.+++. +.++|.||+
T Consensus 21 ~~~~~EIaF~GRSNVGKSSlIN~l~~~k~LArtSktPGrTq~iNf--f~~~~~-~~lVDlPGY 80 (200)
T COG0218 21 EDDLPEIAFAGRSNVGKSSLINALTNQKNLARTSKTPGRTQLINF--FEVDDE-LRLVDLPGY 80 (200)
T ss_pred CCCCcEEEEEccCcccHHHHHHHHhCCcceeecCCCCCccceeEE--EEecCc-EEEEeCCCc
Confidence 3346789999999999999999999977 789999999999883 333332 678999986
No 416
>KOG0059 consensus Lipid exporter ABCA1 and related proteins, ABC superfamily [Lipid transport and metabolism; General function prediction only]
Probab=99.61 E-value=2.6e-15 Score=161.08 Aligned_cols=165 Identities=19% Similarity=0.178 Sum_probs=122.2
Q ss_pred CCCCeEEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCccccccccccccceEEEECCEeecccCccccccccccCcccc
Q 018394 8 AGEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRG 87 (356)
Q Consensus 8 ~~~s~~v~~~~g~~v~LvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~~D~pGl~~~~~~~~~~~ 87 (356)
++++|.|++ +++.|+.|+|||||||+|++|||...+ +.|.+.++|..+.. ++.- ......+|+.
T Consensus 582 ~~ls~~V~~--gecfgLLG~NGAGKtT~f~mltG~~~~-----------t~G~a~i~g~~i~~-~~~~--~~~~~~iGyC 645 (885)
T KOG0059|consen 582 RGLSFAVPP--GECFGLLGVNGAGKTTTFKMLTGETKP-----------TSGEALIKGHDITV-STDF--QQVRKQLGYC 645 (885)
T ss_pred cceEEEecC--CceEEEecCCCCCchhhHHHHhCCccC-----------CcceEEEecCcccc-ccch--hhhhhhcccC
Confidence 689999999 789999999999999999999999988 89999998887653 1110 0123345666
Q ss_pred cccccccc---chhHHHHHHhcC--ChHHHHHHHHHHHHHccC--ccccccCcccccceecccee---------eeecCC
Q 018394 88 RQVIAVSK---SSDIVLMVLDAS--KSEGHRQILTKELEAVGL--RLNKRPPQIYFKKKKTGGIS---------FNSTLP 151 (356)
Q Consensus 88 ~~~~~~~~---~~d~i~~v~d~~--~~~~~~~~i~~~L~~~~i--~l~~~~~~lS~g~~qr~~ia---------l~~DEp 151 (356)
+|.-.... .-+.+.+..... ....-.+.++..|+.+++ ..+++...+|+|+++|+.+| +++|||
T Consensus 646 PQ~d~l~~~lT~rEhL~~~arlrG~~~~di~~~v~~ll~~~~L~~~~~~~~~~ySgG~kRkLs~aialig~p~vi~LDEP 725 (885)
T KOG0059|consen 646 PQFDALWEELTGREHLEFYARLRGLPRSDIGSAIEKLLRLVGLGPYANKQVRTYSGGNKRRLSFAIALIGDPSVILLDEP 725 (885)
T ss_pred CchhhhhhhccHHHHHHHHHHHcCCChhHHHHHHHHHHHHcCChhhhccchhhCCCcchhhHHHHHHHhcCCCEEEecCC
Confidence 66533322 233333333222 223334568899999999 78999999999999998766 899999
Q ss_pred CCCCCHHH---HHHHHHHhcccC-cEEEEccCCCHHHH-HHH
Q 018394 152 LTHVDEKL---CYQILHEYKIHN-AEVLFREDATVDDL-IDV 188 (356)
Q Consensus 152 ~~~LD~~~---~~~il~~l~~~~-~~i~~thd~~~~~~-~~~ 188 (356)
++|+||.. +..++.++..+. +++++||.+++.|. |+.
T Consensus 726 stGmDP~arr~lW~ii~~~~k~g~aiiLTSHsMeE~EaLCtR 767 (885)
T KOG0059|consen 726 STGLDPKARRHLWDIIARLRKNGKAIILTSHSMEEAEALCTR 767 (885)
T ss_pred CCCCCHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHHhhh
Confidence 99999987 455666666655 99999999887654 443
No 417
>TIGR00437 feoB ferrous iron transporter FeoB. FeoB (773 amino acids in E. coli), a cytoplasmic membrane protein required for iron(II) update, is encoded in an operon with FeoA (75 amino acids), which is also required, and is regulated by Fur. There appear to be two copies in Archaeoglobus fulgidus and Clostridium acetobutylicum.
Probab=99.60 E-value=6.4e-16 Score=158.80 Aligned_cols=147 Identities=24% Similarity=0.319 Sum_probs=99.6
Q ss_pred cCCCCcHHHHHHHHHcCCCCccccccccccccceEEEECCEeecccCccccccccccCc-cccccccccccchhHHHHHH
Q 018394 26 GFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGK-GRGRQVIAVSKSSDIVLMVL 104 (356)
Q Consensus 26 G~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~~D~pGl~~~~~~~~-~~~~~~~~~~~~~d~i~~v~ 104 (356)
|.||||||||+|+|+|....++++||||++...|.+.++|..+.++||||......... ..........+.+|++++|+
T Consensus 1 G~pNvGKSSL~N~Ltg~~~~v~n~pG~Tv~~~~~~i~~~~~~i~lvDtPG~~~~~~~s~~e~v~~~~l~~~~aDvvI~Vv 80 (591)
T TIGR00437 1 GNPNVGKSTLFNALTGANQTVGNWPGVTVEKKEGKLGFQGEDIEIVDLPGIYSLTTFSLEEEVARDYLLNEKPDLVVNVV 80 (591)
T ss_pred CCCCCCHHHHHHHHhCCCCeecCCCCeEEEEEEEEEEECCeEEEEEECCCccccCccchHHHHHHHHHhhcCCCEEEEEe
Confidence 89999999999999999888999999999999999999999999999999754221100 00000001123456666666
Q ss_pred hcCChHHHHHHHHHHHHHccCccccccCcccccceeccceeeeecCCCCCCCHHHHHHHHHHhcccCcEEEEccCCCHHH
Q 018394 105 DASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNAEVLFREDATVDD 184 (356)
Q Consensus 105 d~~~~~~~~~~i~~~L~~~~i~l~~~~~~lS~g~~qr~~ial~~DEp~~~LD~~~~~~il~~l~~~~~~i~~thd~~~~~ 184 (356)
|++...+..... .+
T Consensus 81 Dat~ler~l~l~--------------------------------------------~q---------------------- 94 (591)
T TIGR00437 81 DASNLERNLYLT--------------------------------------------LQ---------------------- 94 (591)
T ss_pred cCCcchhhHHHH--------------------------------------------HH----------------------
Confidence 665421111000 00
Q ss_pred HHHHHhccccccceEEEeecCCCCChh----hHHHHhc--CCCEEEeccccccchHHHHHHHHHHh
Q 018394 185 LIDVIEGNRKYMKCVYVYNKIDVIGID----DVDKLAR--QPNSVVISCNLKLNLDRLLARMWEEM 244 (356)
Q Consensus 185 ~~~~i~~~~~~~p~i~v~NK~Dl~~~~----~~~~l~~--~~~~i~iSa~~~~~l~~L~~~i~~~l 244 (356)
+. ...+|+++|+||+|+.... +.+.+.+ ..+++++||++|.|++++.+.+.+..
T Consensus 95 ----l~--~~~~PiIIVlNK~Dl~~~~~i~~d~~~L~~~lg~pvv~tSA~tg~Gi~eL~~~i~~~~ 154 (591)
T TIGR00437 95 ----LL--ELGIPMILALNLVDEAEKKGIRIDEEKLEERLGVPVVPTSATEGRGIERLKDAIRKAI 154 (591)
T ss_pred ----HH--hcCCCEEEEEehhHHHHhCCChhhHHHHHHHcCCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 00 1136999999999986322 2233332 23589999999999999999998754
No 418
>KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only]
Probab=99.60 E-value=2.1e-15 Score=147.77 Aligned_cols=147 Identities=20% Similarity=0.197 Sum_probs=109.2
Q ss_pred CCCeEEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCccccccccccccceEEEECCEeecccCccccccccccCccccc
Q 018394 9 GEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGR 88 (356)
Q Consensus 9 ~~s~~v~~~~g~~v~LvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~~D~pGl~~~~~~~~~~~~ 88 (356)
+.+|-+.. +.+|++||||||||||||+.++|...| +.|++.-.-... .++.+
T Consensus 408 ~l~fgid~--~srvAlVGPNG~GKsTLlKl~~gdl~p-----------~~G~vs~~~H~~---------------~~~y~ 459 (614)
T KOG0927|consen 408 KLNFGIDL--DSRVALVGPNGAGKSTLLKLITGDLQP-----------TIGMVSRHSHNK---------------LPRYN 459 (614)
T ss_pred hhhcccCc--ccceeEecCCCCchhhhHHHHhhcccc-----------cccccccccccc---------------chhhh
Confidence 34566777 779999999999999999999999877 778775322111 01112
Q ss_pred cccccc--cchhHHHHHHhcCChHHHHHHHHHHHHHccC---ccccccCcccccceecccee---------eeecCCCCC
Q 018394 89 QVIAVS--KSSDIVLMVLDASKSEGHRQILTKELEAVGL---RLNKRPPQIYFKKKKTGGIS---------FNSTLPLTH 154 (356)
Q Consensus 89 ~~~~~~--~~~d~i~~v~d~~~~~~~~~~i~~~L~~~~i---~l~~~~~~lS~g~~qr~~ia---------l~~DEp~~~ 154 (356)
|..... -....+.++++........+.+..+|.++|+ ....+..+||.|++.|+..+ +++||||++
T Consensus 460 Qh~~e~ldl~~s~le~~~~~~~~~~~~e~~r~ilgrfgLtgd~q~~p~~~LS~Gqr~rVlFa~l~~kqP~lLlLDEPtnh 539 (614)
T KOG0927|consen 460 QHLAEQLDLDKSSLEFMMPKFPDEKELEEMRSILGRFGLTGDAQVVPMSQLSDGQRRRVLFARLAVKQPHLLLLDEPTNH 539 (614)
T ss_pred hhhHhhcCcchhHHHHHHHhccccchHHHHHHHHHHhCCCccccccchhhcccccchhHHHHHHHhcCCcEEEecCCCcC
Confidence 221111 1234466777776655567788999999999 45677899999999999887 999999999
Q ss_pred CCHHHHHHHHHHhc-ccCcEEEEccCCCHH
Q 018394 155 VDEKLCYQILHEYK-IHNAEVLFREDATVD 183 (356)
Q Consensus 155 LD~~~~~~il~~l~-~~~~~i~~thd~~~~ 183 (356)
||.+.+..+-+.+. ..+++|+++||..+.
T Consensus 540 LDi~tid~laeaiNe~~Ggvv~vSHDfrlI 569 (614)
T KOG0927|consen 540 LDIETIDALAEAINEFPGGVVLVSHDFRLI 569 (614)
T ss_pred CCchhHHHHHHHHhccCCceeeeechhhHH
Confidence 99998877766666 356899999998754
No 419
>cd04163 Era Era subfamily. Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.
Probab=99.60 E-value=1.2e-15 Score=129.92 Aligned_cols=58 Identities=43% Similarity=0.579 Sum_probs=50.6
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcCCC-CccccccccccccceEEEECCEeecccCccccc
Q 018394 20 GRVALIGFPSVGKSTLLTLLTGTHS-EAASYEFTTLTCIPGIIHYNDTKIQLLDLPGII 77 (356)
Q Consensus 20 ~~v~LvG~~gaGKSTLln~L~g~~~-~vs~~p~TT~~~~~G~i~~~g~~i~~~D~pGl~ 77 (356)
..|+++|++|||||||+|.++|... .+++.+.||+....+.....+..+.++||||+.
T Consensus 4 ~~i~~~G~~g~GKttl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~ 62 (168)
T cd04163 4 GFVAIVGRPNVGKSTLLNALVGQKISIVSPKPQTTRNRIRGIYTDDDAQIIFVDTPGIH 62 (168)
T ss_pred eEEEEECCCCCCHHHHHHHHhCCceEeccCCCCceeceEEEEEEcCCeEEEEEECCCCC
Confidence 4799999999999999999999873 567788999988888777777889999999974
No 420
>cd03278 ABC_SMC_barmotin Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function. Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, w
Probab=99.60 E-value=4.3e-16 Score=139.08 Aligned_cols=151 Identities=9% Similarity=0.016 Sum_probs=92.1
Q ss_pred CCCCeEEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCccccccccccccceEEEECCEeecccCccccccccccCcccc
Q 018394 8 AGEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRG 87 (356)
Q Consensus 8 ~~~s~~v~~~~g~~v~LvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~~D~pGl~~~~~~~~~~~ 87 (356)
.++++++.+ | +++|+||||||||||+++|++...+.... .-+.+..|.+.+.|.+.... + ....+++.
T Consensus 14 ~~~~l~~~~--g-~~~i~G~nGsGKStll~al~~l~~~~~~~--~~~~~~~~~~~~~~~~~~~~--~-----~~~~v~~v 81 (197)
T cd03278 14 DKTTIPFPP--G-LTAIVGPNGSGKSNIIDAIRWVLGEQSAK--SLRGEKMSDVIFAGSETRKP--A-----NFAEVTLT 81 (197)
T ss_pred CCeeeecCC--C-cEEEECCCCCCHHHHHHHHHHHhccccch--hhcccCHHHHhccCCCCCCC--C-----ceEEEEEE
Confidence 567888877 7 99999999999999999999886331000 00111234455555433210 0 01112333
Q ss_pred ccccccccchhHHHHHHhcCChHHHHHHHHHHHHHccCccccccCcccccceecccee-------------eeecCCCCC
Q 018394 88 RQVIAVSKSSDIVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGIS-------------FNSTLPLTH 154 (356)
Q Consensus 88 ~~~~~~~~~~d~i~~v~d~~~~~~~~~~i~~~L~~~~i~l~~~~~~lS~g~~qr~~ia-------------l~~DEp~~~ 154 (356)
+|.. +.. +.. . ..+.+.+.++..+ ..++.+..||+|++||++++ +++|||+++
T Consensus 82 fq~~------~~~-~~~---~---~~~~~~~~l~~~~-~~~~~~~~LS~G~kqrl~la~~l~~~~~~~~~illlDEP~~~ 147 (197)
T cd03278 82 FDNS------DGR-YSI---I---SQGDVSEIIEAPG-KKVQRLSLLSGGEKALTALALLFAIFRVRPSPFCVLDEVDAA 147 (197)
T ss_pred EEcC------CCc-eeE---E---ehhhHHHHHhCCC-ccccchhhcCHHHHHHHHHHHHHHHhccCCCCEEEEeCCccc
Confidence 3322 211 100 0 1234555555522 46778899999999998654 778999999
Q ss_pred CCHHHHHHHHH---HhcccCcEEEEccCCCHHH
Q 018394 155 VDEKLCYQILH---EYKIHNAEVLFREDATVDD 184 (356)
Q Consensus 155 LD~~~~~~il~---~l~~~~~~i~~thd~~~~~ 184 (356)
||+.....+++ ++....++|++||+....+
T Consensus 148 LD~~~~~~l~~~l~~~~~~~tiIiitH~~~~~~ 180 (197)
T cd03278 148 LDDANVERFARLLKEFSKETQFIVITHRKGTME 180 (197)
T ss_pred CCHHHHHHHHHHHHHhccCCEEEEEECCHHHHh
Confidence 99988655544 4434568999999976443
No 421
>cd03270 ABC_UvrA_I The excision repair protein UvrA domain I; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=99.59 E-value=3.3e-15 Score=136.22 Aligned_cols=66 Identities=14% Similarity=0.207 Sum_probs=53.1
Q ss_pred HHHHHHccC---ccccccCcccccceecccee-----------eeecCCCCCCCHHHHHHHHH---Hhc-ccCcEEEEcc
Q 018394 117 TKELEAVGL---RLNKRPPQIYFKKKKTGGIS-----------FNSTLPLTHVDEKLCYQILH---EYK-IHNAEVLFRE 178 (356)
Q Consensus 117 ~~~L~~~~i---~l~~~~~~lS~g~~qr~~ia-----------l~~DEp~~~LD~~~~~~il~---~l~-~~~~~i~~th 178 (356)
.+.|+.+++ .+++++..||+||+||+.++ +++||||++||+.....+++ .+. .+.+++++||
T Consensus 118 ~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~laral~~~p~~~llllDEPt~gLD~~~~~~l~~~l~~~~~~g~tii~itH 197 (226)
T cd03270 118 LGFLVDVGLGYLTLSRSAPTLSGGEAQRIRLATQIGSGLTGVLYVLDEPSIGLHPRDNDRLIETLKRLRDLGNTVLVVEH 197 (226)
T ss_pred HHHHHHCCCCcccccCccCcCCHHHHHHHHHHHHHHhCCCCCEEEEeCCccCCCHHHHHHHHHHHHHHHhCCCEEEEEEe
Confidence 567888888 36889999999999999876 78899999999987655544 443 3458999999
Q ss_pred CCCH
Q 018394 179 DATV 182 (356)
Q Consensus 179 d~~~ 182 (356)
+...
T Consensus 198 ~~~~ 201 (226)
T cd03270 198 DEDT 201 (226)
T ss_pred CHHH
Confidence 9754
No 422
>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....
Probab=99.59 E-value=3.3e-16 Score=127.52 Aligned_cols=59 Identities=46% Similarity=0.683 Sum_probs=53.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC-CCccccccccccccceEEEECCEeecccCccccccc
Q 018394 21 RVALIGFPSVGKSTLLTLLTGTH-SEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEG 79 (356)
Q Consensus 21 ~v~LvG~~gaGKSTLln~L~g~~-~~vs~~p~TT~~~~~G~i~~~g~~i~~~D~pGl~~~ 79 (356)
+|+|+|++|||||||+|+|++.. ..+++.|+||+++..+.+.+++..+.++||||+...
T Consensus 1 ~V~iiG~~~~GKSTlin~l~~~~~~~~~~~~~~T~~~~~~~~~~~~~~~~~vDtpG~~~~ 60 (116)
T PF01926_consen 1 RVAIIGRPNVGKSTLINALTGKKLAKVSNIPGTTRDPVYGQFEYNNKKFILVDTPGINDG 60 (116)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSTSSEESSSTTSSSSEEEEEEEETTEEEEEEESSSCSSS
T ss_pred CEEEECCCCCCHHHHHHHHhccccccccccccceeeeeeeeeeeceeeEEEEeCCCCccc
Confidence 58999999999999999999974 579999999999998999999999999999998653
No 423
>cd04160 Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.
Probab=99.59 E-value=1.7e-15 Score=130.38 Aligned_cols=82 Identities=22% Similarity=0.263 Sum_probs=59.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCc----cccccccccccceEEEECCEeecccCccccccccccCccccccccccccc
Q 018394 21 RVALIGFPSVGKSTLLTLLTGTHSEA----ASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQVIAVSKS 96 (356)
Q Consensus 21 ~v~LvG~~gaGKSTLln~L~g~~~~v----s~~p~TT~~~~~G~i~~~g~~i~~~D~pGl~~~~~~~~~~~~~~~~~~~~ 96 (356)
.|+|+|++|||||||++.|++...+. ...+.+|+....+.+.+++..+.++||||...... .....++.
T Consensus 1 ~i~~vG~~~~GKstLi~~l~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~-------~~~~~~~~ 73 (167)
T cd04160 1 SVLILGLDNAGKTTFLEQLKTLFSKYKGLPPSKITPTVGLNIGTIEVGNARLKFWDLGGQESLRS-------LWDKYYAE 73 (167)
T ss_pred CEEEEecCCCCHHHHHHHHhhhcccccCCcccccCCccccceEEEEECCEEEEEEECCCChhhHH-------HHHHHhCC
Confidence 37899999999999999999864321 22346788888889999999999999999643111 11123566
Q ss_pred hhHHHHHHhcCCh
Q 018394 97 SDIVLMVLDASKS 109 (356)
Q Consensus 97 ~d~i~~v~d~~~~ 109 (356)
+|++++++|....
T Consensus 74 ~~~~v~vvd~~~~ 86 (167)
T cd04160 74 CHAIIYVIDSTDR 86 (167)
T ss_pred CCEEEEEEECchH
Confidence 7777788776543
No 424
>KOG0061 consensus Transporter, ABC superfamily (Breast cancer resistance protein) [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.59 E-value=1.1e-14 Score=150.42 Aligned_cols=164 Identities=16% Similarity=0.139 Sum_probs=111.5
Q ss_pred CCCCeEEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCccccccccccccceEEEECCEeecccCccccccccccCcccc
Q 018394 8 AGEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRG 87 (356)
Q Consensus 8 ~~~s~~v~~~~g~~v~LvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~~D~pGl~~~~~~~~~~~ 87 (356)
++++..++. |+..||+||+|||||||||+|+|....- ....|.|.+||.+.. ...+ ..-.+.+
T Consensus 47 ~~vsg~~~~--Gel~AimG~SGsGKtTLL~~Lagr~~~~--------~~~~G~ilvNG~~~~---~~~~----~~~s~yV 109 (613)
T KOG0061|consen 47 KGVSGTAKP--GELLAIMGPSGSGKTTLLNALAGRLNGG--------LKLSGEILLNGRPRD---SRSF----RKISGYV 109 (613)
T ss_pred eCcEEEEec--CeEEEEECCCCCCHHHHHHHHhccccCC--------CcceEEEEECCccCc---hhhh----hheeEEE
Confidence 588999999 8899999999999999999999997531 126899999995432 1111 1112233
Q ss_pred ccccccccc---hhHHHHHHhcC-----ChHHHHHHHHHHHHHccC--ccccccC-----cccccceecccee-------
Q 018394 88 RQVIAVSKS---SDIVLMVLDAS-----KSEGHRQILTKELEAVGL--RLNKRPP-----QIYFKKKKTGGIS------- 145 (356)
Q Consensus 88 ~~~~~~~~~---~d~i~~v~d~~-----~~~~~~~~i~~~L~~~~i--~l~~~~~-----~lS~g~~qr~~ia------- 145 (356)
.|.-..+.. .+.+.+..... ...+..+++++.++.+|+ ..+...+ .+|+||++|+.||
T Consensus 110 ~QdD~l~~~LTV~EtL~f~A~lrlp~~~~~~~k~~~V~~vi~~LgL~~~~~t~ig~~~~rgiSGGErkRvsia~Ell~~P 189 (613)
T KOG0061|consen 110 QQDDVLLPTLTVRETLRFSALLRLPSSLSKEEKRERVEEVISELGLEKCADTLIGNPGIRGLSGGERKRVSIALELLTDP 189 (613)
T ss_pred cccccccccccHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCChhhccceecCCCCCccccchhhHHHHHHHHHcCC
Confidence 333222222 23333322221 224456789999999999 3555554 5999999999998
Q ss_pred --eeecCCCCCCCHHHHHHH---HHHhc-ccCcEEEEccCCCH--HHHHHH
Q 018394 146 --FNSTLPLTHVDEKLCYQI---LHEYK-IHNAEVLFREDATV--DDLIDV 188 (356)
Q Consensus 146 --l~~DEp~~~LD~~~~~~i---l~~l~-~~~~~i~~thd~~~--~~~~~~ 188 (356)
+++||||+|||.....++ |+.+. .+.++|++-|.++. -++.|.
T Consensus 190 ~iLflDEPTSGLDS~sA~~vv~~Lk~lA~~grtVi~tIHQPss~lf~lFD~ 240 (613)
T KOG0061|consen 190 SILFLDEPTSGLDSFSALQVVQLLKRLARSGRTVICTIHQPSSELFELFDK 240 (613)
T ss_pred CEEEecCCCCCcchhhHHHHHHHHHHHHhCCCEEEEEEeCCcHHHHHHHhH
Confidence 899999999999875554 44444 34588888898763 344443
No 425
>PRK04213 GTP-binding protein; Provisional
Probab=99.59 E-value=2.5e-15 Score=133.97 Aligned_cols=54 Identities=30% Similarity=0.392 Sum_probs=46.0
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHcCCCCccccccccccccceEEEECCEeecccCcccc
Q 018394 19 HGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGI 76 (356)
Q Consensus 19 g~~v~LvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~~D~pGl 76 (356)
...|+|+|++|||||||+|+|+|....++..||+|+++.. +.++ ++.++||||+
T Consensus 9 ~~~i~i~G~~~~GKSsLin~l~~~~~~~~~~~~~t~~~~~--~~~~--~~~l~Dt~G~ 62 (201)
T PRK04213 9 KPEIVFVGRSNVGKSTLVRELTGKKVRVGKRPGVTRKPNH--YDWG--DFILTDLPGF 62 (201)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCCccCCCCceeeCceE--Eeec--ceEEEeCCcc
Confidence 4689999999999999999999988778889999998763 3333 6888999996
No 426
>TIGR00231 small_GTP small GTP-binding protein domain. This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.
Probab=99.58 E-value=6.5e-15 Score=123.67 Aligned_cols=57 Identities=33% Similarity=0.406 Sum_probs=51.4
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcCCCCccccccccccccceEEEECC--EeecccCcccc
Q 018394 20 GRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYND--TKIQLLDLPGI 76 (356)
Q Consensus 20 ~~v~LvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g--~~i~~~D~pGl 76 (356)
..|+++|++|||||||+|.|++...+.+..|++|.+.....+.+++ ..+.++|+||.
T Consensus 2 ~ki~~~G~~~~GKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~ 60 (161)
T TIGR00231 2 IKIVIVGDPNVGKSTLLNRLLGNKFITEYKPGTTRNYVTTVIEEDGKTYKFNLLDTAGQ 60 (161)
T ss_pred eEEEEECCCCCCHHHHHHHHhCCCCcCcCCCCceeeeeEEEEEECCEEEEEEEEECCCc
Confidence 4799999999999999999999987778889999999988888988 67888999984
No 427
>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR). The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.
Probab=99.58 E-value=6.8e-15 Score=165.41 Aligned_cols=157 Identities=15% Similarity=0.157 Sum_probs=103.7
Q ss_pred CCCCeEEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCccccccccccccceEEEECCEeecccCccccccccccCcccc
Q 018394 8 AGEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRG 87 (356)
Q Consensus 8 ~~~s~~v~~~~g~~v~LvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~~D~pGl~~~~~~~~~~~ 87 (356)
++++|++.+ |+.++|+|||||||||||++|+|...+ ..|.+.++|. +..+
T Consensus 443 ~~i~l~i~~--G~~~~I~G~~GsGKSTLl~~l~G~~~~-----------~~G~i~~~g~-iayv---------------- 492 (1490)
T TIGR01271 443 KNISFKLEK--GQLLAVAGSTGSGKSSLLMMIMGELEP-----------SEGKIKHSGR-ISFS---------------- 492 (1490)
T ss_pred eeeEEEECC--CCEEEEECCCCCCHHHHHHHHhCCCCC-----------CCceEEECCE-EEEE----------------
Confidence 578999999 889999999999999999999999876 7899998873 2111
Q ss_pred ccccccc--cchhHHHHHHhcCChHHHHH-----HHHHHHHHccC----ccccccCcccccceecccee---------ee
Q 018394 88 RQVIAVS--KSSDIVLMVLDASKSEGHRQ-----ILTKELEAVGL----RLNKRPPQIYFKKKKTGGIS---------FN 147 (356)
Q Consensus 88 ~~~~~~~--~~~d~i~~v~d~~~~~~~~~-----~i~~~L~~~~i----~l~~~~~~lS~g~~qr~~ia---------l~ 147 (356)
.|....+ .-.|++.+... .......+ .+.+.++.+.. .+..+...||+||+||+++| ++
T Consensus 493 ~Q~~~l~~~Ti~eNI~~g~~-~~~~~~~~~~~~~~L~~~l~~l~~g~~t~vg~~g~~LSgGqkqRi~lARAl~~~~~ill 571 (1490)
T TIGR01271 493 PQTSWIMPGTIKDNIIFGLS-YDEYRYTSVIKACQLEEDIALFPEKDKTVLGEGGITLSGGQRARISLARAVYKDADLYL 571 (1490)
T ss_pred eCCCccCCccHHHHHHhccc-cchHHHHHHHHHHhHHHHHHhccccccccccCcCCCcCHHHHHHHHHHHHHHcCCCEEE
Confidence 1111111 12344433211 11100001 12222333221 24556789999999999998 99
Q ss_pred ecCCCCCCCHHHHHHHHHH----hcccCcEEEEccCCCHHHHHHHHhccccccceEEEeecC
Q 018394 148 STLPLTHVDEKLCYQILHE----YKIHNAEVLFREDATVDDLIDVIEGNRKYMKCVYVYNKI 205 (356)
Q Consensus 148 ~DEp~~~LD~~~~~~il~~----l~~~~~~i~~thd~~~~~~~~~i~~~~~~~p~i~v~NK~ 205 (356)
+||||++||......+++. +..+.|+|++||+...... ...+++++..
T Consensus 572 LDep~saLD~~~~~~i~~~~l~~~~~~~tvilvtH~~~~~~~----------ad~ii~l~~g 623 (1490)
T TIGR01271 572 LDSPFTHLDVVTEKEIFESCLCKLMSNKTRILVTSKLEHLKK----------ADKILLLHEG 623 (1490)
T ss_pred EeCCcccCCHHHHHHHHHHHHHHHhcCCeEEEEeCChHHHHh----------CCEEEEEECC
Confidence 9999999999987666553 3345699999999765332 3556666544
No 428
>cd01861 Rab6 Rab6 subfamily. Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate
Probab=99.57 E-value=9e-15 Score=125.03 Aligned_cols=151 Identities=17% Similarity=0.210 Sum_probs=101.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCccccccccccccceEEEECCE--eecccCccccccccccCccccccccccccchh
Q 018394 21 RVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDT--KIQLLDLPGIIEGASEGKGRGRQVIAVSKSSD 98 (356)
Q Consensus 21 ~v~LvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~--~i~~~D~pGl~~~~~~~~~~~~~~~~~~~~~d 98 (356)
.|+|+|++|||||||++.+++.....+..|++|.+.....+.+++. .+.++|+||..... ......++.+|
T Consensus 2 ki~liG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~-------~~~~~~~~~~~ 74 (161)
T cd01861 2 KLVFLGDQSVGKTSIITRFMYDTFDNQYQATIGIDFLSKTMYLEDKTVRLQLWDTAGQERFR-------SLIPSYIRDSS 74 (161)
T ss_pred EEEEECCCCCCHHHHHHHHHcCCCCccCCCceeeeEEEEEEEECCEEEEEEEEECCCcHHHH-------HHHHHHhccCC
Confidence 6899999999999999999998877788899999999998988885 47789999843211 01122346677
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHHccCccccccCcccccceeccceeeeecCCCCCCCHHHHHHHHHHhcccCcEEEEcc
Q 018394 99 IVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNAEVLFRE 178 (356)
Q Consensus 99 ~i~~v~d~~~~~~~~~~i~~~L~~~~i~l~~~~~~lS~g~~qr~~ial~~DEp~~~LD~~~~~~il~~l~~~~~~i~~th 178 (356)
++++++|...+..- +.+..++.. +..
T Consensus 75 ~ii~v~d~~~~~s~-~~~~~~~~~--------------------------------------------~~~--------- 100 (161)
T cd01861 75 VAVVVYDITNRQSF-DNTDKWIDD--------------------------------------------VRD--------- 100 (161)
T ss_pred EEEEEEECcCHHHH-HHHHHHHHH--------------------------------------------HHH---------
Confidence 77777776554321 112222111 100
Q ss_pred CCCHHHHHHHHhccccccceEEEeecCCCCCh-----hhHHHHhc--CCCEEEeccccccchHHHHHHHHHHh
Q 018394 179 DATVDDLIDVIEGNRKYMKCVYVYNKIDVIGI-----DDVDKLAR--QPNSVVISCNLKLNLDRLLARMWEEM 244 (356)
Q Consensus 179 d~~~~~~~~~i~~~~~~~p~i~v~NK~Dl~~~-----~~~~~l~~--~~~~i~iSa~~~~~l~~L~~~i~~~l 244 (356)
. .....|+++|+||+|+... ++...+.+ ...++++||+++.|++++.+.+.+.|
T Consensus 101 ---------~---~~~~~~iilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~i~~~l 161 (161)
T cd01861 101 ---------E---RGNDVIIVLVGNKTDLSDKRQVSTEEGEKKAKELNAMFIETSAKAGHNVKELFRKIASAL 161 (161)
T ss_pred ---------h---CCCCCEEEEEEEChhccccCccCHHHHHHHHHHhCCEEEEEeCCCCCCHHHHHHHHHHhC
Confidence 0 0013599999999999432 22222222 23478999999999999999987653
No 429
>KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.56 E-value=6.6e-15 Score=159.97 Aligned_cols=183 Identities=15% Similarity=0.117 Sum_probs=129.7
Q ss_pred CCCCeEEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCccccccccccccceEEEECCEeecccCccccccccccCcccc
Q 018394 8 AGEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRG 87 (356)
Q Consensus 8 ~~~s~~v~~~~g~~v~LvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~~D~pGl~~~~~~~~~~~ 87 (356)
+++||.+.+ +++|||||++|||||||.++|-+...+ ..|.|.+||.++.-+....++. ..+..
T Consensus 1157 k~is~~I~p--~eKVGIVGRTGaGKSSL~~aLFRl~e~-----------~~G~I~IDgvdI~~igL~dLRs----rlsII 1219 (1381)
T KOG0054|consen 1157 KGISFTIKP--GEKVGIVGRTGAGKSSLILALFRLVEP-----------AEGEILIDGVDISKIGLHDLRS----RLSII 1219 (1381)
T ss_pred cCceEEEcC--CceEEEeCCCCCCHHHHHHHHHHhcCc-----------cCCeEEEcCeecccccHHHHHh----cCeee
Confidence 789999999 889999999999999999999999765 7999999999987665444332 23444
Q ss_pred ccccccccchhHHHHHHhcCChHHHHHHHHHHHHHccC--c-----------cccccCcccccceecccee---------
Q 018394 88 RQVIAVSKSSDIVLMVLDASKSEGHRQILTKELEAVGL--R-----------LNKRPPQIYFKKKKTGGIS--------- 145 (356)
Q Consensus 88 ~~~~~~~~~~d~i~~v~d~~~~~~~~~~i~~~L~~~~i--~-----------l~~~~~~lS~g~~qr~~ia--------- 145 (356)
+|.+..+... +-+-+|..+.-. .+.+.+.|+..++ . +...-.++|.||||.+++|
T Consensus 1220 PQdPvLFsGT--vR~NLDPf~e~s-D~~IW~ALe~~~Lk~~v~~~p~~Ld~~v~egG~N~SvGQRQLlCLARALLr~skI 1296 (1381)
T KOG0054|consen 1220 PQDPVLFSGT--VRFNLDPFDEYS-DDEIWEALERCQLKDVVSSLPGGLDSEVSEGGENFSVGQRQLLCLARALLRKSKI 1296 (1381)
T ss_pred CCCCceecCc--cccccCcccccC-HHHHHHHHHHhChHHHHhhCCcCCCceecCCCccCChHHHHHHHHHHHHhccCCE
Confidence 5554444321 112234433222 2446667777655 1 1222367999999999998
Q ss_pred eeecCCCCCCCHHH---HHHHHHHhcccCcEEEEccCCCHHHHHHHHhccccccceEEEeecCCCCChhhHHHHhcCC
Q 018394 146 FNSTLPLTHVDEKL---CYQILHEYKIHNAEVLFREDATVDDLIDVIEGNRKYMKCVYVYNKIDVIGIDDVDKLARQP 220 (356)
Q Consensus 146 l~~DEp~~~LD~~~---~~~il~~l~~~~~~i~~thd~~~~~~~~~i~~~~~~~p~i~v~NK~Dl~~~~~~~~l~~~~ 220 (356)
+++||.|+++|+++ +++.+++--.+.|++.+-|..+-. ...+.|+|+.+..+..-....+|...+
T Consensus 1297 LvLDEATAsVD~~TD~lIQ~tIR~~F~dcTVltIAHRl~TV----------md~DrVlVld~G~v~EfdsP~~Ll~~~ 1364 (1381)
T KOG0054|consen 1297 LVLDEATASVDPETDALIQKTIREEFKDCTVLTIAHRLNTV----------MDSDRVLVLDAGRVVEFDSPAELLSDK 1364 (1381)
T ss_pred EEEecccccCChHHHHHHHHHHHHHhcCCeEEEEeeccchh----------hhcCeEEEeeCCeEeecCChHHHHhCC
Confidence 99999999999987 777777766778999999986421 124789999888776444445555433
No 430
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.
Probab=99.56 E-value=1.5e-14 Score=163.17 Aligned_cols=158 Identities=17% Similarity=0.243 Sum_probs=104.2
Q ss_pred CCCCeEEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCccccccccccccceEEEECCEeecccCccccccccccCcccc
Q 018394 8 AGEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRG 87 (356)
Q Consensus 8 ~~~s~~v~~~~g~~v~LvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~~D~pGl~~~~~~~~~~~ 87 (356)
++++|++++ |+.++|+|++|||||||+++|+|...+ ..|.+.++|. +..+
T Consensus 655 ~~isl~i~~--G~~v~IvG~~GsGKSTLl~~l~g~~~~-----------~~G~i~~~g~-i~yv---------------- 704 (1522)
T TIGR00957 655 NGITFSIPE--GALVAVVGQVGCGKSSLLSALLAEMDK-----------VEGHVHMKGS-VAYV---------------- 704 (1522)
T ss_pred eeeEEEEcC--CCEEEEECCCCCCHHHHHHHHhCCCcc-----------CCcEEEECCE-EEEE----------------
Confidence 588999999 889999999999999999999999876 7899998872 2111
Q ss_pred ccccccc--cchhHHHHHHhcCChHHHHHHHH------HHHHHc--cC--ccccccCcccccceecccee---------e
Q 018394 88 RQVIAVS--KSSDIVLMVLDASKSEGHRQILT------KELEAV--GL--RLNKRPPQIYFKKKKTGGIS---------F 146 (356)
Q Consensus 88 ~~~~~~~--~~~d~i~~v~d~~~~~~~~~~i~------~~L~~~--~i--~l~~~~~~lS~g~~qr~~ia---------l 146 (356)
.|....+ .-.|++.+... ... +..+.+. +.++.+ |. .+..+...||+||+||+++| +
T Consensus 705 ~Q~~~l~~~Ti~eNI~~g~~-~~~-~~~~~~~~~~~l~~~l~~~~~g~~t~ig~~g~~LSGGQkqRiaLARAl~~~~~il 782 (1522)
T TIGR00957 705 PQQAWIQNDSLRENILFGKA-LNE-KYYQQVLEACALLPDLEILPSGDRTEIGEKGVNLSGGQKQRVSLARAVYSNADIY 782 (1522)
T ss_pred cCCccccCCcHHHHhhcCCc-cCH-HHHHHHHHHhCCHHHHHhcCCCCCceecCCCCCCCHHHHHHHHHHHHHhcCCCEE
Confidence 1111111 11233332111 111 1111111 112221 11 34566789999999999998 9
Q ss_pred eecCCCCCCCHHHHHHHHHHhc------ccCcEEEEccCCCHHHHHHHHhccccccceEEEeecCCC
Q 018394 147 NSTLPLTHVDEKLCYQILHEYK------IHNAEVLFREDATVDDLIDVIEGNRKYMKCVYVYNKIDV 207 (356)
Q Consensus 147 ~~DEp~~~LD~~~~~~il~~l~------~~~~~i~~thd~~~~~~~~~i~~~~~~~p~i~v~NK~Dl 207 (356)
++||||++||......+++.+. .+.|+|++||+...... .+.+++++..-+
T Consensus 783 lLDEp~saLD~~~~~~i~~~l~~~~~~~~~~tvIlvTH~~~~l~~----------~D~ii~l~~G~i 839 (1522)
T TIGR00957 783 LFDDPLSAVDAHVGKHIFEHVIGPEGVLKNKTRILVTHGISYLPQ----------VDVIIVMSGGKI 839 (1522)
T ss_pred EEcCCccccCHHHHHHHHHHHhhhhhhhcCCEEEEEeCChhhhhh----------CCEEEEecCCeE
Confidence 9999999999998777766542 24699999999864332 356777765433
No 431
>PLN03130 ABC transporter C family member; Provisional
Probab=99.55 E-value=1.5e-14 Score=163.36 Aligned_cols=155 Identities=15% Similarity=0.168 Sum_probs=104.7
Q ss_pred CCCCeEEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCccccccccccccc-eEEEECCEeecccCccccccccccCccc
Q 018394 8 AGEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIP-GIIHYNDTKIQLLDLPGIIEGASEGKGR 86 (356)
Q Consensus 8 ~~~s~~v~~~~g~~v~LvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~-G~i~~~g~~i~~~D~pGl~~~~~~~~~~ 86 (356)
+++||++++ |+.++|+|++|||||||+++|+|...+ .. |.+.+.+. +++
T Consensus 634 ~~inl~i~~--Ge~vaIvG~sGSGKSTLl~lLlG~~~~-----------~~GG~I~l~~~-----------------Iay 683 (1622)
T PLN03130 634 SNINLDVPV--GSLVAIVGSTGEGKTSLISAMLGELPP-----------RSDASVVIRGT-----------------VAY 683 (1622)
T ss_pred eceeEEecC--CCEEEEECCCCCCHHHHHHHHHHhhcc-----------CCCceEEEcCe-----------------EEE
Confidence 689999999 889999999999999999999999866 67 78875432 122
Q ss_pred cccccccccc--hhHHHHHHhcCChHHHHHHHHHHHHHccC-------------ccccccCcccccceecccee------
Q 018394 87 GRQVIAVSKS--SDIVLMVLDASKSEGHRQILTKELEAVGL-------------RLNKRPPQIYFKKKKTGGIS------ 145 (356)
Q Consensus 87 ~~~~~~~~~~--~d~i~~v~d~~~~~~~~~~i~~~L~~~~i-------------~l~~~~~~lS~g~~qr~~ia------ 145 (356)
+.|....+.. .|+|.+.-. .+.+...+.++..++ .+...-..|||||+||+++|
T Consensus 684 v~Q~p~LfngTIreNI~fg~~-----~d~e~y~~vl~a~~L~~di~~LP~Gd~T~IGe~G~~LSGGQKQRIaLARAly~~ 758 (1622)
T PLN03130 684 VPQVSWIFNATVRDNILFGSP-----FDPERYERAIDVTALQHDLDLLPGGDLTEIGERGVNISGGQKQRVSMARAVYSN 758 (1622)
T ss_pred EcCccccCCCCHHHHHhCCCc-----ccHHHHHHHHHHhCcHHHHHhCCCcccccccCCCCCCCHHHHHHHHHHHHHhCC
Confidence 2333333222 344443211 122334444444443 23334457999999999998
Q ss_pred ---eeecCCCCCCCHHHHHHHHHH----hcccCcEEEEccCCCHHHHHHHHhccccccceEEEeecCCC
Q 018394 146 ---FNSTLPLTHVDEKLCYQILHE----YKIHNAEVLFREDATVDDLIDVIEGNRKYMKCVYVYNKIDV 207 (356)
Q Consensus 146 ---l~~DEp~~~LD~~~~~~il~~----l~~~~~~i~~thd~~~~~~~~~i~~~~~~~p~i~v~NK~Dl 207 (356)
+++||||++||.+..+.+++. +..+.|+|++||+...... .+.|+++.+.-+
T Consensus 759 ~~IlLLDEptSALD~~~~~~I~~~~l~~~l~~kTvIlVTH~l~~l~~----------aD~Ii~L~~G~i 817 (1622)
T PLN03130 759 SDVYIFDDPLSALDAHVGRQVFDKCIKDELRGKTRVLVTNQLHFLSQ----------VDRIILVHEGMI 817 (1622)
T ss_pred CCEEEECCCccccCHHHHHHHHHHHhhHHhcCCEEEEEECCHhHHHh----------CCEEEEEeCCEE
Confidence 999999999999876555433 3345799999999754332 356777765543
No 432
>PRK00454 engB GTP-binding protein YsxC; Reviewed
Probab=99.55 E-value=6.5e-15 Score=130.37 Aligned_cols=56 Identities=29% Similarity=0.328 Sum_probs=46.0
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHcCC--CCccccccccccccceEEEECCEeecccCccccc
Q 018394 19 HGRVALIGFPSVGKSTLLTLLTGTH--SEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGII 77 (356)
Q Consensus 19 g~~v~LvG~~gaGKSTLln~L~g~~--~~vs~~p~TT~~~~~G~i~~~g~~i~~~D~pGl~ 77 (356)
...|+|+|.+|||||||+|+|++.. ..+++.+|+|+++....+ +.++.++||||+.
T Consensus 24 ~~~v~ivG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~---~~~l~l~DtpG~~ 81 (196)
T PRK00454 24 GPEIAFAGRSNVGKSSLINALTNRKNLARTSKTPGRTQLINFFEV---NDKLRLVDLPGYG 81 (196)
T ss_pred CCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCceeEEEEEec---CCeEEEeCCCCCC
Confidence 3689999999999999999999964 567888999988764332 4678899999964
No 433
>PLN03232 ABC transporter C family member; Provisional
Probab=99.54 E-value=1.2e-14 Score=163.54 Aligned_cols=155 Identities=16% Similarity=0.171 Sum_probs=102.6
Q ss_pred CCCCeEEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCccccccccccccceEEE-ECCEeecccCccccccccccCccc
Q 018394 8 AGEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIH-YNDTKIQLLDLPGIIEGASEGKGR 86 (356)
Q Consensus 8 ~~~s~~v~~~~g~~v~LvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~-~~g~~i~~~D~pGl~~~~~~~~~~ 86 (356)
+++||++++ |+.++|+|++|||||||+++|+|...+ ..|.+. +.+ .+++
T Consensus 634 ~~inl~i~~--Ge~vaIvG~sGSGKSTLl~lLlG~~~~-----------~~G~i~~~~~-----------------~Iay 683 (1495)
T PLN03232 634 SDINLEIPV--GSLVAIVGGTGEGKTSLISAMLGELSH-----------AETSSVVIRG-----------------SVAY 683 (1495)
T ss_pred eeeEEEEcC--CCEEEEECCCCCcHHHHHHHHhCCCcc-----------cCCCEEEecC-----------------cEEE
Confidence 689999999 889999999999999999999999866 455332 111 1223
Q ss_pred cccccccccc--hhHHHHHHhcCChHHHHHHHHHHHHHccC-------------ccccccCcccccceecccee------
Q 018394 87 GRQVIAVSKS--SDIVLMVLDASKSEGHRQILTKELEAVGL-------------RLNKRPPQIYFKKKKTGGIS------ 145 (356)
Q Consensus 87 ~~~~~~~~~~--~d~i~~v~d~~~~~~~~~~i~~~L~~~~i-------------~l~~~~~~lS~g~~qr~~ia------ 145 (356)
..|....+.. .|+|.+.-. .+.+...+.++..++ .+...-..|||||+||+++|
T Consensus 684 v~Q~p~Lf~gTIreNI~fg~~-----~~~e~~~~vl~~~~L~~di~~Lp~Gd~T~IGe~G~~LSGGQkQRIaLARAly~~ 758 (1495)
T PLN03232 684 VPQVSWIFNATVRENILFGSD-----FESERYWRAIDVTALQHDLDLLPGRDLTEIGERGVNISGGQKQRVSMARAVYSN 758 (1495)
T ss_pred EcCccccccccHHHHhhcCCc-----cCHHHHHHHHHHhCCHHHHHhCCCCCCceecCCCcccCHHHHHHHHHHHHHhcC
Confidence 3344333332 445544311 122334444444443 22333457999999999999
Q ss_pred ---eeecCCCCCCCHHHHHHHHHH----hcccCcEEEEccCCCHHHHHHHHhccccccceEEEeecCCC
Q 018394 146 ---FNSTLPLTHVDEKLCYQILHE----YKIHNAEVLFREDATVDDLIDVIEGNRKYMKCVYVYNKIDV 207 (356)
Q Consensus 146 ---l~~DEp~~~LD~~~~~~il~~----l~~~~~~i~~thd~~~~~~~~~i~~~~~~~p~i~v~NK~Dl 207 (356)
+++||||++||.+..+.+++. ...+.|+|++||+.+.... .+.|++++..-+
T Consensus 759 ~~IlLLDEptSaLD~~t~~~I~~~~l~~~l~~kT~IlvTH~~~~l~~----------aD~Ii~L~~G~i 817 (1495)
T PLN03232 759 SDIYIFDDPLSALDAHVAHQVFDSCMKDELKGKTRVLVTNQLHFLPL----------MDRIILVSEGMI 817 (1495)
T ss_pred CCEEEEcCCccccCHHHHHHHHHHHhhhhhcCCEEEEEECChhhHHh----------CCEEEEEeCCEE
Confidence 999999999999876665543 2245699999999754322 356777765443
No 434
>PTZ00243 ABC transporter; Provisional
Probab=99.54 E-value=2.4e-14 Score=161.36 Aligned_cols=159 Identities=17% Similarity=0.175 Sum_probs=103.7
Q ss_pred CCCCeEEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCccccccccccccceEEEECCEeecccCccccccccccCcccc
Q 018394 8 AGEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRG 87 (356)
Q Consensus 8 ~~~s~~v~~~~g~~v~LvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~~D~pGl~~~~~~~~~~~ 87 (356)
+++||++.+ |+.++|+|+|||||||||++|+|...+ ..|.+.+.+. +. +.
T Consensus 677 ~~isl~i~~--G~~~~IiG~nGsGKSTLL~~i~G~~~~-----------~~G~i~~~~~-i~----------------yv 726 (1560)
T PTZ00243 677 RDVSVSVPR--GKLTVVLGATGSGKSTLLQSLLSQFEI-----------SEGRVWAERS-IA----------------YV 726 (1560)
T ss_pred eeeEEEECC--CCEEEEECCCCCcHHHHHHHHhcCCCC-----------CCcEEEECCe-EE----------------EE
Confidence 478899999 889999999999999999999999866 7888876421 11 11
Q ss_pred ccccccc--cchhHHHHHHhcCChHH-----HHHHHHHHHHHc--cC--ccccccCcccccceecccee---------ee
Q 018394 88 RQVIAVS--KSSDIVLMVLDASKSEG-----HRQILTKELEAV--GL--RLNKRPPQIYFKKKKTGGIS---------FN 147 (356)
Q Consensus 88 ~~~~~~~--~~~d~i~~v~d~~~~~~-----~~~~i~~~L~~~--~i--~l~~~~~~lS~g~~qr~~ia---------l~ 147 (356)
.|....+ .-.|++.+... ..... ....+.+.++.+ |+ .+..+...||+||+||+++| ++
T Consensus 727 ~Q~~~l~~~Tv~enI~~~~~-~~~~~~~~~~~~~~l~~~l~~l~~g~~t~i~~~g~~LSGGQkqRvaLARAl~~~p~ill 805 (1560)
T PTZ00243 727 PQQAWIMNATVRGNILFFDE-EDAARLADAVRVSQLEADLAQLGGGLETEIGEKGVNLSGGQKARVSLARAVYANRDVYL 805 (1560)
T ss_pred eCCCccCCCcHHHHHHcCCh-hhHHHHHHHHHHhhhHHHHHHhhccchHHhcCCCCCCCHHHHHHHHHHHHHhcCCCEEE
Confidence 1211111 11233332100 00000 001223344444 44 46777899999999999998 99
Q ss_pred ecCCCCCCCHHHHHHHHHHh----cccCcEEEEccCCCHHHHHHHHhccccccceEEEeecCCC
Q 018394 148 STLPLTHVDEKLCYQILHEY----KIHNAEVLFREDATVDDLIDVIEGNRKYMKCVYVYNKIDV 207 (356)
Q Consensus 148 ~DEp~~~LD~~~~~~il~~l----~~~~~~i~~thd~~~~~~~~~i~~~~~~~p~i~v~NK~Dl 207 (356)
+||||++||+.....+++.+ ..+.++|++||+...... .+.++++++.-+
T Consensus 806 LDEP~saLD~~~~~~i~~~~~~~~~~~~TvIlvTH~~~~~~~----------ad~ii~l~~G~i 859 (1560)
T PTZ00243 806 LDDPLSALDAHVGERVVEECFLGALAGKTRVLATHQVHVVPR----------ADYVVALGDGRV 859 (1560)
T ss_pred EcCccccCCHHHHHHHHHHHHHHhhCCCEEEEEeCCHHHHHh----------CCEEEEEECCEE
Confidence 99999999998766655432 235699999999765432 356777765443
No 435
>cd00880 Era_like Era (E. coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se
Probab=99.54 E-value=7.9e-15 Score=123.23 Aligned_cols=150 Identities=23% Similarity=0.320 Sum_probs=96.0
Q ss_pred EEcCCCCcHHHHHHHHHcCCCC-ccccccccccccceEEEEC-CEeecccCccccccccccCccccccccccccchhHHH
Q 018394 24 LIGFPSVGKSTLLTLLTGTHSE-AASYEFTTLTCIPGIIHYN-DTKIQLLDLPGIIEGASEGKGRGRQVIAVSKSSDIVL 101 (356)
Q Consensus 24 LvG~~gaGKSTLln~L~g~~~~-vs~~p~TT~~~~~G~i~~~-g~~i~~~D~pGl~~~~~~~~~~~~~~~~~~~~~d~i~ 101 (356)
|+|++|||||||+|.|++.... +++++++|.++....+.+. +..+.++|+||+.................++.+|+++
T Consensus 1 i~G~~gsGKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~~~~~d~il 80 (163)
T cd00880 1 LFGRTNAGKSSLLNALLGQEVAIVSPVPGTTTDPVEYVWELGPLGPVVLIDTPGIDEAGGLGREREELARRVLERADLIL 80 (163)
T ss_pred CcCCCCCCHHHHHHHHhCccccccCCCCCcEECCeEEEEEecCCCcEEEEECCCCCccccchhhHHHHHHHHHHhCCEEE
Confidence 5899999999999999998754 7889999999988887776 6788999999975432211110011112233444444
Q ss_pred HHHhcCChHHHHHHHHHHHHHccCccccccCcccccceeccceeeeecCCCCCCCHHHHHHHHHHhcccCcEEEEccCCC
Q 018394 102 MVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNAEVLFREDAT 181 (356)
Q Consensus 102 ~v~d~~~~~~~~~~i~~~L~~~~i~l~~~~~~lS~g~~qr~~ial~~DEp~~~LD~~~~~~il~~l~~~~~~i~~thd~~ 181 (356)
+++++......... . +
T Consensus 81 ~v~~~~~~~~~~~~---------------------------------------------~-~------------------ 96 (163)
T cd00880 81 FVVDADLRADEEEE---------------------------------------------K-L------------------ 96 (163)
T ss_pred EEEeCCCCCCHHHH---------------------------------------------H-H------------------
Confidence 44444332111100 0 0
Q ss_pred HHHHHHHHhccccccceEEEeecCCCCChhhHHHH-------h---cCCCEEEeccccccchHHHHHHHHHH
Q 018394 182 VDDLIDVIEGNRKYMKCVYVYNKIDVIGIDDVDKL-------A---RQPNSVVISCNLKLNLDRLLARMWEE 243 (356)
Q Consensus 182 ~~~~~~~i~~~~~~~p~i~v~NK~Dl~~~~~~~~l-------~---~~~~~i~iSa~~~~~l~~L~~~i~~~ 243 (356)
+... .....|.++|+||+|+....+.... . ...+++++||.++.|++++.+.+.+.
T Consensus 97 ----~~~~--~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~v~~l~~~l~~~ 162 (163)
T cd00880 97 ----LELL--RERGKPVLLVLNKIDLLPEEEEEELLELRLLILLLLLGLPVIAVSALTGEGIDELREALIEA 162 (163)
T ss_pred ----HHHH--HhcCCeEEEEEEccccCChhhHHHHHHHHHhhcccccCCceEEEeeeccCCHHHHHHHHHhh
Confidence 0000 1123699999999999865443221 1 12468899999999999999888754
No 436
>cd00879 Sar1 Sar1 subfamily. Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.
Probab=99.53 E-value=1.8e-14 Score=127.09 Aligned_cols=80 Identities=21% Similarity=0.322 Sum_probs=58.0
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcCCCCccccccccccccceEEEECCEeecccCccccccccccCccccccccccccchhH
Q 018394 20 GRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQVIAVSKSSDI 99 (356)
Q Consensus 20 ~~v~LvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~~D~pGl~~~~~~~~~~~~~~~~~~~~~d~ 99 (356)
..|+|+|++|||||||++.+++.... ...+|..+..+.+.+++.++.++|+||..... ......++.+|.
T Consensus 20 ~ki~ilG~~~~GKStLi~~l~~~~~~---~~~~T~~~~~~~i~~~~~~~~l~D~~G~~~~~-------~~~~~~~~~ad~ 89 (190)
T cd00879 20 AKILFLGLDNAGKTTLLHMLKDDRLA---QHVPTLHPTSEELTIGNIKFKTFDLGGHEQAR-------RLWKDYFPEVDG 89 (190)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCc---ccCCccCcceEEEEECCEEEEEEECCCCHHHH-------HHHHHHhccCCE
Confidence 57899999999999999999986532 23447778889999999999999999853211 011123456777
Q ss_pred HHHHHhcCCh
Q 018394 100 VLMVLDASKS 109 (356)
Q Consensus 100 i~~v~d~~~~ 109 (356)
+++++|.++.
T Consensus 90 iilV~D~~~~ 99 (190)
T cd00879 90 IVFLVDAADP 99 (190)
T ss_pred EEEEEECCcH
Confidence 7777776643
No 437
>cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily. IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s.
Probab=99.52 E-value=2.2e-14 Score=123.31 Aligned_cols=81 Identities=22% Similarity=0.185 Sum_probs=57.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCccccccccccccceEEEEC---CEeecccCccccccccccCccccccccccccch
Q 018394 21 RVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYN---DTKIQLLDLPGIIEGASEGKGRGRQVIAVSKSS 97 (356)
Q Consensus 21 ~v~LvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~---g~~i~~~D~pGl~~~~~~~~~~~~~~~~~~~~~ 97 (356)
.|+|+|++|||||||+|+|++........+++|.+.....+... +.++.++||||...... .....+..+
T Consensus 2 ~i~iiG~~~~GKtsli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~iiDtpG~~~~~~-------~~~~~~~~~ 74 (168)
T cd01887 2 VVTVMGHVDHGKTTLLDKIRKTNVAAGEAGGITQHIGAFEVPAEVLKIPGITFIDTPGHEAFTN-------MRARGASLT 74 (168)
T ss_pred EEEEEecCCCCHHHHHHHHHhcccccccCCCeEEeeccEEEecccCCcceEEEEeCCCcHHHHH-------HHHHHHhhc
Confidence 68999999999999999999876555566788888777777764 67899999999632110 001123456
Q ss_pred hHHHHHHhcCC
Q 018394 98 DIVLMVLDASK 108 (356)
Q Consensus 98 d~i~~v~d~~~ 108 (356)
|++++++|+..
T Consensus 75 d~il~v~d~~~ 85 (168)
T cd01887 75 DIAILVVAADD 85 (168)
T ss_pred CEEEEEEECCC
Confidence 66666666654
No 438
>cd01889 SelB_euk SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and euk
Probab=99.52 E-value=1.2e-14 Score=128.80 Aligned_cols=81 Identities=26% Similarity=0.329 Sum_probs=56.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC-------CCCccccccccccccceEEEEC--------------CEeecccCccccccc
Q 018394 21 RVALIGFPSVGKSTLLTLLTGT-------HSEAASYEFTTLTCIPGIIHYN--------------DTKIQLLDLPGIIEG 79 (356)
Q Consensus 21 ~v~LvG~~gaGKSTLln~L~g~-------~~~vs~~p~TT~~~~~G~i~~~--------------g~~i~~~D~pGl~~~ 79 (356)
.|+|+|.+|+|||||+++|++. ..+.+..+++|+++....+.+. +..+.++||||....
T Consensus 2 ~i~i~G~~~~GKstLi~~l~~~~~~~~~~~~~~e~~~g~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~ 81 (192)
T cd01889 2 NVGVLGHVDSGKTSLAKALSEIASTAAFDKNPQSQERGITLDLGFSSFYVDKPKHLRELINPGEENLQITLVDCPGHASL 81 (192)
T ss_pred eEEEEecCCCCHHHHHHHHHhccchhhhccCHHHHHcCCeeeecceEEEecccccccccccccccCceEEEEECCCcHHH
Confidence 6899999999999999999973 2334556799999988777776 678899999996321
Q ss_pred cccCccccccccccccchhHHHHHHhcCC
Q 018394 80 ASEGKGRGRQVIAVSKSSDIVLMVLDASK 108 (356)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~d~i~~v~d~~~ 108 (356)
..........+|.+++|+|+..
T Consensus 82 -------~~~~~~~~~~~d~vi~VvD~~~ 103 (192)
T cd01889 82 -------IRTIIGGAQIIDLMLLVVDATK 103 (192)
T ss_pred -------HHHHHHHHhhCCEEEEEEECCC
Confidence 1122222334555666666543
No 439
>cd04142 RRP22 RRP22 subfamily. RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated.
Probab=99.51 E-value=5.7e-14 Score=125.48 Aligned_cols=161 Identities=17% Similarity=0.171 Sum_probs=97.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCccccccccccccceEEEECCE--eecccCccccccccc-cCccccccccccccch
Q 018394 21 RVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDT--KIQLLDLPGIIEGAS-EGKGRGRQVIAVSKSS 97 (356)
Q Consensus 21 ~v~LvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~--~i~~~D~pGl~~~~~-~~~~~~~~~~~~~~~~ 97 (356)
.|+|+|.+|||||||++.+++...+....|.++.+...-.+.++|. .+.++||||...... .+..+.......++.+
T Consensus 2 kI~ivG~~~vGKTsLi~~~~~~~f~~~~~pt~~~~~~~~~i~~~~~~~~l~i~Dt~G~~~~~~~~~~e~~~~~~~~~~~a 81 (198)
T cd04142 2 RVAVLGAPGVGKTAIVRQFLAQEFPEEYIPTEHRRLYRPAVVLSGRVYDLHILDVPNMQRYPGTAGQEWMDPRFRGLRNS 81 (198)
T ss_pred EEEEECCCCCcHHHHHHHHHcCCCCcccCCccccccceeEEEECCEEEEEEEEeCCCcccCCccchhHHHHHHHhhhccC
Confidence 6899999999999999999986644334556655555556778884 566899999743210 0000001122235678
Q ss_pred hHHHHHHhcCChHHHHHHHHHHHHHccCccccccCcccccceeccceeeeecCCCCCCCHHHHHHHHHHhcccCcEEEEc
Q 018394 98 DIVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNAEVLFR 177 (356)
Q Consensus 98 d~i~~v~d~~~~~~~~~~i~~~L~~~~i~l~~~~~~lS~g~~qr~~ial~~DEp~~~LD~~~~~~il~~l~~~~~~i~~t 177 (356)
|++++|+|...+.. .+.+..+++. +++.
T Consensus 82 d~iilv~D~~~~~S-~~~~~~~~~~----------------------------------------i~~~----------- 109 (198)
T cd04142 82 RAFILVYDICSPDS-FHYVKLLRQQ----------------------------------------ILET----------- 109 (198)
T ss_pred CEEEEEEECCCHHH-HHHHHHHHHH----------------------------------------HHHh-----------
Confidence 88888888765422 1111111111 0000
Q ss_pred cCCCHHHHHHHHhccccccceEEEeecCCCCCh-----hhHHHHhc---CCCEEEeccccccchHHHHHHHHHHh
Q 018394 178 EDATVDDLIDVIEGNRKYMKCVYVYNKIDVIGI-----DDVDKLAR---QPNSVVISCNLKLNLDRLLARMWEEM 244 (356)
Q Consensus 178 hd~~~~~~~~~i~~~~~~~p~i~v~NK~Dl~~~-----~~~~~l~~---~~~~i~iSa~~~~~l~~L~~~i~~~l 244 (356)
........|+++|.||+|+... ++...+.. ..+++++||++|.|+++|.+.+.+.+
T Consensus 110 -----------~~~~~~~~piiivgNK~Dl~~~~~~~~~~~~~~~~~~~~~~~~e~Sak~g~~v~~lf~~i~~~~ 173 (198)
T cd04142 110 -----------RPAGNKEPPIVVVGNKRDQQRHRFAPRHVLSVLVRKSWKCGYLECSAKYNWHILLLFKELLISA 173 (198)
T ss_pred -----------cccCCCCCCEEEEEECccccccccccHHHHHHHHHHhcCCcEEEecCCCCCCHHHHHHHHHHHh
Confidence 0000123699999999999532 22333321 24579999999999999998887643
No 440
>TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB. Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes.
Probab=99.51 E-value=1.1e-14 Score=127.62 Aligned_cols=56 Identities=29% Similarity=0.301 Sum_probs=46.0
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHcCC--CCccccccccccccceEEEECCEeecccCccccc
Q 018394 19 HGRVALIGFPSVGKSTLLTLLTGTH--SEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGII 77 (356)
Q Consensus 19 g~~v~LvG~~gaGKSTLln~L~g~~--~~vs~~p~TT~~~~~G~i~~~g~~i~~~D~pGl~ 77 (356)
...|+|+|++|||||||+|.|++.. ..+++.+++|.++....+ + ..+.++||||+.
T Consensus 18 ~~~i~ivG~~~~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~--~-~~~~liDtpG~~ 75 (179)
T TIGR03598 18 GPEIAFAGRSNVGKSSLINALTNRKKLARTSKTPGRTQLINFFEV--N-DGFRLVDLPGYG 75 (179)
T ss_pred CCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCcceEEEEEEe--C-CcEEEEeCCCCc
Confidence 5789999999999999999999974 457889999998765433 3 368899999963
No 441
>cd01868 Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP
Probab=99.50 E-value=6.5e-14 Score=120.39 Aligned_cols=152 Identities=20% Similarity=0.185 Sum_probs=98.1
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcCCCCccccccccccccceEEEECCE--eecccCccccccccccCccccccccccccch
Q 018394 20 GRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDT--KIQLLDLPGIIEGASEGKGRGRQVIAVSKSS 97 (356)
Q Consensus 20 ~~v~LvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~--~i~~~D~pGl~~~~~~~~~~~~~~~~~~~~~ 97 (356)
..|+++|+||||||||++.+++........|.++.+.....+.+++. .+.++|+||...... .....++.+
T Consensus 4 ~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~-------~~~~~~~~~ 76 (165)
T cd01868 4 FKIVLIGDSGVGKSNLLSRFTRNEFNLDSKSTIGVEFATRSIQIDGKTIKAQIWDTAGQERYRA-------ITSAYYRGA 76 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCChHHHHH-------HHHHHHCCC
Confidence 47999999999999999999988755556677777777777888885 467889998642111 011223556
Q ss_pred hHHHHHHhcCChHHHHHHHHHHHHHccCccccccCcccccceeccceeeeecCCCCCCCHHHHHHHHHHhcccCcEEEEc
Q 018394 98 DIVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNAEVLFR 177 (356)
Q Consensus 98 d~i~~v~d~~~~~~~~~~i~~~L~~~~i~l~~~~~~lS~g~~qr~~ial~~DEp~~~LD~~~~~~il~~l~~~~~~i~~t 177 (356)
+.+++++|.+.... .+.+.++ +..+..
T Consensus 77 ~~~i~v~d~~~~~s-~~~~~~~--------------------------------------------~~~~~~-------- 103 (165)
T cd01868 77 VGALLVYDITKKQT-FENVERW--------------------------------------------LKELRD-------- 103 (165)
T ss_pred CEEEEEEECcCHHH-HHHHHHH--------------------------------------------HHHHHH--------
Confidence 66677777664322 1112221 111110
Q ss_pred cCCCHHHHHHHHhccccccceEEEeecCCCCChh-----hHHHHhc--CCCEEEeccccccchHHHHHHHHHHh
Q 018394 178 EDATVDDLIDVIEGNRKYMKCVYVYNKIDVIGID-----DVDKLAR--QPNSVVISCNLKLNLDRLLARMWEEM 244 (356)
Q Consensus 178 hd~~~~~~~~~i~~~~~~~p~i~v~NK~Dl~~~~-----~~~~l~~--~~~~i~iSa~~~~~l~~L~~~i~~~l 244 (356)
. .....|+++|.||+|+.... +...+.. ...++++||++|.|++++.+.+.+.+
T Consensus 104 -----------~--~~~~~pi~vv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~i 164 (165)
T cd01868 104 -----------H--ADSNIVIMLVGNKSDLRHLRAVPTEEAKAFAEKNGLSFIETSALDGTNVEEAFKQLLTEI 164 (165)
T ss_pred -----------h--CCCCCeEEEEEECccccccccCCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 0 01135999999999986422 2223322 23488999999999999999887643
No 442
>cd04155 Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.
Probab=99.50 E-value=3.8e-14 Score=122.85 Aligned_cols=76 Identities=20% Similarity=0.337 Sum_probs=52.8
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHcCCCCccccccccccccce----EEEECCEeecccCccccccccccCccccccccccc
Q 018394 19 HGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPG----IIHYNDTKIQLLDLPGIIEGASEGKGRGRQVIAVS 94 (356)
Q Consensus 19 g~~v~LvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G----~i~~~g~~i~~~D~pGl~~~~~~~~~~~~~~~~~~ 94 (356)
...|+|+|+||||||||++.|++.... +..|+.| .+.++|..+.++|+||..... ......+
T Consensus 14 ~~~v~i~G~~g~GKStLl~~l~~~~~~-------~~~~t~g~~~~~i~~~~~~~~~~D~~G~~~~~-------~~~~~~~ 79 (173)
T cd04155 14 EPRILILGLDNAGKTTILKQLASEDIS-------HITPTQGFNIKTVQSDGFKLNVWDIGGQRAIR-------PYWRNYF 79 (173)
T ss_pred ccEEEEEccCCCCHHHHHHHHhcCCCc-------ccCCCCCcceEEEEECCEEEEEEECCCCHHHH-------HHHHHHh
Confidence 468999999999999999999997431 1223344 778889999999999853211 1111234
Q ss_pred cchhHHHHHHhcCC
Q 018394 95 KSSDIVLMVLDASK 108 (356)
Q Consensus 95 ~~~d~i~~v~d~~~ 108 (356)
+.+|.+++++|...
T Consensus 80 ~~~~~ii~v~D~~~ 93 (173)
T cd04155 80 ENTDCLIYVIDSAD 93 (173)
T ss_pred cCCCEEEEEEeCCC
Confidence 56777777777664
No 443
>cd00881 GTP_translation_factor GTP translation factor family. This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function.
Probab=99.50 E-value=3.5e-14 Score=124.18 Aligned_cols=81 Identities=23% Similarity=0.295 Sum_probs=55.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCcc----------------ccccccccccceEEEECCEeecccCccccccccccCc
Q 018394 21 RVALIGFPSVGKSTLLTLLTGTHSEAA----------------SYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGK 84 (356)
Q Consensus 21 ~v~LvG~~gaGKSTLln~L~g~~~~vs----------------~~p~TT~~~~~G~i~~~g~~i~~~D~pGl~~~~~~~~ 84 (356)
.|+|+|.+|||||||+|+|++...... ..+++|.+.....+.+.+..+.++||||.....
T Consensus 1 ~v~v~G~~~~GKStlln~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~---- 76 (189)
T cd00881 1 NVGIAGHVDHGKTTLTERLLYVTGDIERDGTVEETFLDVLKEERERGITIKSGVATFEWPDRRVNFIDTPGHEDFS---- 76 (189)
T ss_pred CEEEEeCCCCCHHHHHHHHHHhcCCCCcCCceecccccCCHHHHHcCCCeecceEEEeeCCEEEEEEeCCCcHHHH----
Confidence 389999999999999999998864422 235677777777777788889999999964211
Q ss_pred cccccccccccchhHHHHHHhcCC
Q 018394 85 GRGRQVIAVSKSSDIVLMVLDASK 108 (356)
Q Consensus 85 ~~~~~~~~~~~~~d~i~~v~d~~~ 108 (356)
......++.+|.+++++|+..
T Consensus 77 ---~~~~~~~~~~d~~i~v~d~~~ 97 (189)
T cd00881 77 ---SEVIRGLSVSDGAILVVDANE 97 (189)
T ss_pred ---HHHHHHHHhcCEEEEEEECCC
Confidence 111122345566666665543
No 444
>cd04159 Arl10_like Arl10-like subfamily. Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.
Probab=99.50 E-value=4e-14 Score=119.64 Aligned_cols=78 Identities=17% Similarity=0.270 Sum_probs=51.6
Q ss_pred EEEEcCCCCcHHHHHHHHHcCCCCccccccccccccceEEEECCEeecccCccccccccccCccccccccccccchhHHH
Q 018394 22 VALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQVIAVSKSSDIVL 101 (356)
Q Consensus 22 v~LvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~~D~pGl~~~~~~~~~~~~~~~~~~~~~d~i~ 101 (356)
|+|+|++|||||||+|+|++........|.+ ......+..++..+.++|+||..... ......++.+|+++
T Consensus 2 i~i~G~~~~GKssl~~~l~~~~~~~~~~~t~--~~~~~~~~~~~~~~~~~D~~g~~~~~-------~~~~~~~~~~d~ii 72 (159)
T cd04159 2 ITLVGLQNSGKTTLVNVIAGGQFSEDTIPTV--GFNMRKVTKGNVTLKVWDLGGQPRFR-------SMWERYCRGVNAIV 72 (159)
T ss_pred EEEEcCCCCCHHHHHHHHccCCCCcCccCCC--CcceEEEEECCEEEEEEECCCCHhHH-------HHHHHHHhcCCEEE
Confidence 7999999999999999999986543333433 33334566677788899999853211 01112245567777
Q ss_pred HHHhcCC
Q 018394 102 MVLDASK 108 (356)
Q Consensus 102 ~v~d~~~ 108 (356)
+++|...
T Consensus 73 ~v~d~~~ 79 (159)
T cd04159 73 YVVDAAD 79 (159)
T ss_pred EEEECCC
Confidence 7777654
No 445
>PRK15467 ethanolamine utilization protein EutP; Provisional
Probab=99.50 E-value=2.3e-14 Score=123.44 Aligned_cols=139 Identities=21% Similarity=0.281 Sum_probs=84.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCccccccccccccceEEEECCEeecccCccccccccccCccccccccccccchhHH
Q 018394 21 RVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQVIAVSKSSDIV 100 (356)
Q Consensus 21 ~v~LvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~~D~pGl~~~~~~~~~~~~~~~~~~~~~d~i 100 (356)
.|+++|+||||||||+|+|+|.... ....+.+.+++. .++||||....... ........++.+|++
T Consensus 3 ~i~~iG~~~~GKstl~~~l~~~~~~---------~~~~~~v~~~~~--~~iDtpG~~~~~~~---~~~~~~~~~~~ad~i 68 (158)
T PRK15467 3 RIAFVGAVGAGKTTLFNALQGNYTL---------ARKTQAVEFNDK--GDIDTPGEYFSHPR---WYHALITTLQDVDML 68 (158)
T ss_pred EEEEECCCCCCHHHHHHHHcCCCcc---------CccceEEEECCC--CcccCCccccCCHH---HHHHHHHHHhcCCEE
Confidence 6999999999999999999987532 123455566554 36899996422110 011112224556666
Q ss_pred HHHHhcCChHHHHHHHHHHHHHccCccccccCcccccceeccceeeeecCCCCCCCHHHHHHHHHHhcccCcEEEEccCC
Q 018394 101 LMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNAEVLFREDA 180 (356)
Q Consensus 101 ~~v~d~~~~~~~~~~i~~~L~~~~i~l~~~~~~lS~g~~qr~~ial~~DEp~~~LD~~~~~~il~~l~~~~~~i~~thd~ 180 (356)
++++|+...... ++.
T Consensus 69 l~v~d~~~~~s~------------------------------------------~~~----------------------- 83 (158)
T PRK15467 69 IYVHGANDPESR------------------------------------------LPA----------------------- 83 (158)
T ss_pred EEEEeCCCcccc------------------------------------------cCH-----------------------
Confidence 666655432110 000
Q ss_pred CHHHHHHHHhccccccceEEEeecCCCCChh--hHHHH-hcC---CCEEEeccccccchHHHHHHHHHHhC
Q 018394 181 TVDDLIDVIEGNRKYMKCVYVYNKIDVIGID--DVDKL-ARQ---PNSVVISCNLKLNLDRLLARMWEEMG 245 (356)
Q Consensus 181 ~~~~~~~~i~~~~~~~p~i~v~NK~Dl~~~~--~~~~l-~~~---~~~i~iSa~~~~~l~~L~~~i~~~l~ 245 (356)
.+.+ + ...+|.++++||+|+.... .+..+ ... .+++++||++|.|+++|.+.+.+.+.
T Consensus 84 ---~~~~-~---~~~~~ii~v~nK~Dl~~~~~~~~~~~~~~~~~~~p~~~~Sa~~g~gi~~l~~~l~~~~~ 147 (158)
T PRK15467 84 ---GLLD-I---GVSKRQIAVISKTDMPDADVAATRKLLLETGFEEPIFELNSHDPQSVQQLVDYLASLTK 147 (158)
T ss_pred ---HHHh-c---cCCCCeEEEEEccccCcccHHHHHHHHHHcCCCCCEEEEECCCccCHHHHHHHHHHhch
Confidence 0000 0 0135899999999986422 22222 122 36899999999999999999988764
No 446
>smart00178 SAR Sar1p-like members of the Ras-family of small GTPases. Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus.
Probab=99.50 E-value=7.1e-14 Score=123.21 Aligned_cols=81 Identities=20% Similarity=0.271 Sum_probs=60.4
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHcCCCCccccccccccccceEEEECCEeecccCccccccccccCccccccccccccchh
Q 018394 19 HGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQVIAVSKSSD 98 (356)
Q Consensus 19 g~~v~LvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~~D~pGl~~~~~~~~~~~~~~~~~~~~~d 98 (356)
...|+++|++|||||||++.+++... +. ..+|+.+..+.+.+++.++.++|+||...... .....++.+|
T Consensus 17 ~~~i~ivG~~~~GKTsli~~l~~~~~--~~-~~~t~~~~~~~~~~~~~~~~~~D~~G~~~~~~-------~~~~~~~~ad 86 (184)
T smart00178 17 HAKILFLGLDNAGKTTLLHMLKNDRL--AQ-HQPTQHPTSEELAIGNIKFTTFDLGGHQQARR-------LWKDYFPEVN 86 (184)
T ss_pred cCEEEEECCCCCCHHHHHHHHhcCCC--cc-cCCccccceEEEEECCEEEEEEECCCCHHHHH-------HHHHHhCCCC
Confidence 36899999999999999999998642 12 24577778888888999999999999643211 1112356788
Q ss_pred HHHHHHhcCCh
Q 018394 99 IVLMVLDASKS 109 (356)
Q Consensus 99 ~i~~v~d~~~~ 109 (356)
.+++|+|++.+
T Consensus 87 ~ii~vvD~~~~ 97 (184)
T smart00178 87 GIVYLVDAYDK 97 (184)
T ss_pred EEEEEEECCcH
Confidence 88888888764
No 447
>cd04157 Arl6 Arl6 subfamily. Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that A
Probab=99.50 E-value=3.8e-14 Score=121.14 Aligned_cols=81 Identities=15% Similarity=0.204 Sum_probs=52.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCccccccccccccceEEEECCEeecccCccccccccccCccccccccccccchhHH
Q 018394 21 RVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQVIAVSKSSDIV 100 (356)
Q Consensus 21 ~v~LvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~~D~pGl~~~~~~~~~~~~~~~~~~~~~d~i 100 (356)
+|+++|++|||||||++.+++.....+.+. .|.......+...+..+.++||||...... .....++.+|.+
T Consensus 1 ~i~~vG~~~~GKTsl~~~l~~~~~~~~~~~-~t~g~~~~~~~~~~~~~~l~Dt~G~~~~~~-------~~~~~~~~~d~i 72 (162)
T cd04157 1 NILVVGLDNSGKTTIINQLKPENAQSQIIV-PTVGFNVESFEKGNLSFTAFDMSGQGKYRG-------LWEHYYKNIQGI 72 (162)
T ss_pred CEEEECCCCCCHHHHHHHHcccCCCcceec-CccccceEEEEECCEEEEEEECCCCHhhHH-------HHHHHHccCCEE
Confidence 478999999999999999998643222222 222222334456778889999999642111 111234678888
Q ss_pred HHHHhcCCh
Q 018394 101 LMVLDASKS 109 (356)
Q Consensus 101 ~~v~d~~~~ 109 (356)
++++|.+..
T Consensus 73 i~v~D~~~~ 81 (162)
T cd04157 73 IFVIDSSDR 81 (162)
T ss_pred EEEEeCCcH
Confidence 888887654
No 448
>cd04151 Arl1 Arl1 subfamily. Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability.
Probab=99.49 E-value=5.2e-14 Score=120.41 Aligned_cols=79 Identities=22% Similarity=0.320 Sum_probs=54.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCccccccccccccceEEEECCEeecccCccccccccccCccccccccccccchhHH
Q 018394 21 RVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQVIAVSKSSDIV 100 (356)
Q Consensus 21 ~v~LvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~~D~pGl~~~~~~~~~~~~~~~~~~~~~d~i 100 (356)
+|+|+|++|||||||++.|+..... .. .+|.......+.+.+..+.++|+||..... ......+..+|++
T Consensus 1 kv~lvG~~~~GKTsl~~~l~~~~~~-~~--~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~-------~~~~~~~~~~~~i 70 (158)
T cd04151 1 RILILGLDNAGKTTILYRLQLGEVV-TT--IPTIGFNVETVTYKNLKFQVWDLGGQTSIR-------PYWRCYYSNTDAI 70 (158)
T ss_pred CEEEECCCCCCHHHHHHHHccCCCc-Cc--CCccCcCeEEEEECCEEEEEEECCCCHHHH-------HHHHHHhcCCCEE
Confidence 4789999999999999999765432 22 235445555667778889999999964311 1112235678888
Q ss_pred HHHHhcCCh
Q 018394 101 LMVLDASKS 109 (356)
Q Consensus 101 ~~v~d~~~~ 109 (356)
++++|....
T Consensus 71 i~v~d~~~~ 79 (158)
T cd04151 71 IYVVDSTDR 79 (158)
T ss_pred EEEEECCCH
Confidence 888887654
No 449
>cd04158 ARD1 ARD1 subfamily. ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membra
Probab=99.49 E-value=6.7e-14 Score=121.44 Aligned_cols=149 Identities=19% Similarity=0.205 Sum_probs=95.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCccccccccccccceEEEECCEeecccCccccccccccCccccccccccccchhHH
Q 018394 21 RVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQVIAVSKSSDIV 100 (356)
Q Consensus 21 ~v~LvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~~D~pGl~~~~~~~~~~~~~~~~~~~~~d~i 100 (356)
+|+|+|.+|||||||++.+++... .+ +.+|+.+....+.+.+..+.++|+||..... ......++.+|.+
T Consensus 1 ~vvlvG~~~~GKTsl~~~l~~~~~--~~-~~~T~~~~~~~~~~~~~~i~l~Dt~G~~~~~-------~~~~~~~~~ad~i 70 (169)
T cd04158 1 RVVTLGLDGAGKTTILFKLKQDEF--MQ-PIPTIGFNVETVEYKNLKFTIWDVGGKHKLR-------PLWKHYYLNTQAV 70 (169)
T ss_pred CEEEECCCCCCHHHHHHHHhcCCC--CC-cCCcCceeEEEEEECCEEEEEEECCCChhcc-------hHHHHHhccCCEE
Confidence 478999999999999999998642 22 4566666666777888899999999963211 1112235778888
Q ss_pred HHHHhcCChHHHHHHHHHHHHHccCccccccCcccccceeccceeeeecCCCCCCCHHHHHHHHHHhcccCcEEEEccCC
Q 018394 101 LMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNAEVLFREDA 180 (356)
Q Consensus 101 ~~v~d~~~~~~~~~~i~~~L~~~~i~l~~~~~~lS~g~~qr~~ial~~DEp~~~LD~~~~~~il~~l~~~~~~i~~thd~ 180 (356)
++|+|.+.+..- +.+..++.. +++.
T Consensus 71 i~V~D~s~~~s~-~~~~~~~~~----------------------------------------~~~~-------------- 95 (169)
T cd04158 71 VFVVDSSHRDRV-SEAHSELAK----------------------------------------LLTE-------------- 95 (169)
T ss_pred EEEEeCCcHHHH-HHHHHHHHH----------------------------------------HhcC--------------
Confidence 888887764221 111111111 0000
Q ss_pred CHHHHHHHHhccccccceEEEeecCCCCCh---hhHHHHhcC----C----CEEEeccccccchHHHHHHHHHHh
Q 018394 181 TVDDLIDVIEGNRKYMKCVYVYNKIDVIGI---DDVDKLARQ----P----NSVVISCNLKLNLDRLLARMWEEM 244 (356)
Q Consensus 181 ~~~~~~~~i~~~~~~~p~i~v~NK~Dl~~~---~~~~~l~~~----~----~~i~iSa~~~~~l~~L~~~i~~~l 244 (356)
.....+|+++|.||+|+... ++...+... . .++++||++|.|++++.+.+.+.+
T Consensus 96 ----------~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~~f~~l~~~~ 160 (169)
T cd04158 96 ----------KELRDALLLIFANKQDVAGALSVEEMTELLSLHKLCCGRSWYIQGCDARSGMGLYEGLDWLSRQL 160 (169)
T ss_pred ----------hhhCCCCEEEEEeCcCcccCCCHHHHHHHhCCccccCCCcEEEEeCcCCCCCCHHHHHHHHHHHH
Confidence 00113599999999998632 333333221 1 356789999999999999887655
No 450
>cd01876 YihA_EngB The YihA (EngB) subfamily. This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.
Probab=99.48 E-value=3.4e-14 Score=121.26 Aligned_cols=53 Identities=34% Similarity=0.407 Sum_probs=41.9
Q ss_pred EEEEcCCCCcHHHHHHHHH--cCCCCccccccccccccceEEEECCEeecccCccccc
Q 018394 22 VALIGFPSVGKSTLLTLLT--GTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGII 77 (356)
Q Consensus 22 v~LvG~~gaGKSTLln~L~--g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~~D~pGl~ 77 (356)
|+|+|++|||||||+|.|+ +...+.++.+++|.+... +.+++ .+.++|+||+.
T Consensus 2 i~l~G~~g~GKTtL~~~l~~~~~~~~~~~~~~~t~~~~~--~~~~~-~~~~~D~~g~~ 56 (170)
T cd01876 2 IAFAGRSNVGKSSLINALTNRKKLARTSKTPGKTQLINF--FNVND-KFRLVDLPGYG 56 (170)
T ss_pred EEEEcCCCCCHHHHHHHHhcCCceeeecCCCCcceeEEE--EEccC-eEEEecCCCcc
Confidence 7999999999999999999 455667888888887643 23333 78889999863
No 451
>cd03271 ABC_UvrA_II The excision repair protein UvrA domain II; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=99.48 E-value=1.5e-13 Score=127.46 Aligned_cols=71 Identities=15% Similarity=0.125 Sum_probs=56.7
Q ss_pred HHHHHHHHHccC---ccccccCcccccceecccee------------eeecCCCCCCCHHHHHHHHHHhc----ccCcEE
Q 018394 114 QILTKELEAVGL---RLNKRPPQIYFKKKKTGGIS------------FNSTLPLTHVDEKLCYQILHEYK----IHNAEV 174 (356)
Q Consensus 114 ~~i~~~L~~~~i---~l~~~~~~lS~g~~qr~~ia------------l~~DEp~~~LD~~~~~~il~~l~----~~~~~i 174 (356)
....+.|+.+|+ .+++++..||+|++||+.++ +++||||++||+.....+++.+. .+.+++
T Consensus 147 ~~~~~~L~~vgL~~l~l~~~~~~LSgGe~QRl~LAraL~~~~~~p~lllLDEPtsgLD~~~~~~l~~~L~~l~~~g~tvI 226 (261)
T cd03271 147 ARKLQTLCDVGLGYIKLGQPATTLSGGEAQRIKLAKELSKRSTGKTLYILDEPTTGLHFHDVKKLLEVLQRLVDKGNTVV 226 (261)
T ss_pred HHHHHHHHHcCCchhhhcCccccCCHHHHHHHHHHHHHhcCCCCCcEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEE
Confidence 456678888998 36889999999999999876 78899999999998665555443 356999
Q ss_pred EEccCCCHHH
Q 018394 175 LFREDATVDD 184 (356)
Q Consensus 175 ~~thd~~~~~ 184 (356)
+++|+.+..+
T Consensus 227 iitH~~~~i~ 236 (261)
T cd03271 227 VIEHNLDVIK 236 (261)
T ss_pred EEeCCHHHHH
Confidence 9999986543
No 452
>cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily. This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali
Probab=99.47 E-value=1.9e-13 Score=117.06 Aligned_cols=152 Identities=18% Similarity=0.189 Sum_probs=95.8
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcCCCCccccccccccccceEEEECCE--eecccCccccccccccCccccccccccccch
Q 018394 20 GRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDT--KIQLLDLPGIIEGASEGKGRGRQVIAVSKSS 97 (356)
Q Consensus 20 ~~v~LvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~--~i~~~D~pGl~~~~~~~~~~~~~~~~~~~~~ 97 (356)
..++++|++|||||||++.+++.. .+++++.|+.+.....+.++|. .+.++||||..... .+ ....++.+
T Consensus 3 ~ki~i~G~~~~GKtsl~~~~~~~~-~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~----~~---~~~~~~~~ 74 (164)
T cd04145 3 YKLVVVGGGGVGKSALTIQFIQSY-FVTDYDPTIEDSYTKQCEIDGQWAILDILDTAGQEEFS----AM---REQYMRTG 74 (164)
T ss_pred eEEEEECCCCCcHHHHHHHHHhCC-CCcccCCCccceEEEEEEECCEEEEEEEEECCCCcchh----HH---HHHHHhhC
Confidence 479999999999999999998754 4577777877666666677775 46679999953211 01 11123556
Q ss_pred hHHHHHHhcCChHHHHHHHHHHHHHccCccccccCcccccceeccceeeeecCCCCCCCHHHHHHHHHHhcccCcEEEEc
Q 018394 98 DIVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNAEVLFR 177 (356)
Q Consensus 98 d~i~~v~d~~~~~~~~~~i~~~L~~~~i~l~~~~~~lS~g~~qr~~ial~~DEp~~~LD~~~~~~il~~l~~~~~~i~~t 177 (356)
|.+++++|...... .+.+..++ ..+.
T Consensus 75 ~~~ilv~d~~~~~s-~~~~~~~~--------------------------------------------~~~~--------- 100 (164)
T cd04145 75 EGFLLVFSVTDRGS-FEEVDKFH--------------------------------------------TQIL--------- 100 (164)
T ss_pred CEEEEEEECCCHHH-HHHHHHHH--------------------------------------------HHHH---------
Confidence 66667766654322 11111111 1100
Q ss_pred cCCCHHHHHHHHhccccccceEEEeecCCCCChh-----hHHHHhc--CCCEEEeccccccchHHHHHHHHHHh
Q 018394 178 EDATVDDLIDVIEGNRKYMKCVYVYNKIDVIGID-----DVDKLAR--QPNSVVISCNLKLNLDRLLARMWEEM 244 (356)
Q Consensus 178 hd~~~~~~~~~i~~~~~~~p~i~v~NK~Dl~~~~-----~~~~l~~--~~~~i~iSa~~~~~l~~L~~~i~~~l 244 (356)
. .. .....|+++|+||+|+.... +...+.+ ..+++++||++|.|++++.+.+.+.+
T Consensus 101 ---------~-~~-~~~~~piiiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~ 163 (164)
T cd04145 101 ---------R-VK-DRDEFPMILVGNKADLEHQRKVSREEGQELARKLKIPYIETSAKDRLNVDKAFHDLVRVI 163 (164)
T ss_pred ---------H-Hh-CCCCCCEEEEeeCccccccceecHHHHHHHHHHcCCcEEEeeCCCCCCHHHHHHHHHHhh
Confidence 0 00 11235999999999986432 2222221 23589999999999999999887654
No 453
>cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t
Probab=99.47 E-value=1.7e-13 Score=117.95 Aligned_cols=152 Identities=18% Similarity=0.168 Sum_probs=97.6
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcCCCCccccccccccccceEEEECCE--eecccCccccccccccCccccccccccccch
Q 018394 20 GRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDT--KIQLLDLPGIIEGASEGKGRGRQVIAVSKSS 97 (356)
Q Consensus 20 ~~v~LvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~--~i~~~D~pGl~~~~~~~~~~~~~~~~~~~~~ 97 (356)
..++++|++|||||||++.+++........|.++.+.....+.++|. .++++|+||..... ......++.+
T Consensus 3 ~ki~i~G~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~-------~~~~~~~~~~ 75 (166)
T cd01869 3 FKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFR-------TITSSYYRGA 75 (166)
T ss_pred EEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHhHH-------HHHHHHhCcC
Confidence 47899999999999999999987654444455555555566777775 56788999853211 1112235678
Q ss_pred hHHHHHHhcCChHHHHHHHHHHHHHccCccccccCcccccceeccceeeeecCCCCCCCHHHHHHHHHHhcccCcEEEEc
Q 018394 98 DIVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNAEVLFR 177 (356)
Q Consensus 98 d~i~~v~d~~~~~~~~~~i~~~L~~~~i~l~~~~~~lS~g~~qr~~ial~~DEp~~~LD~~~~~~il~~l~~~~~~i~~t 177 (356)
|.+++++|..+... .+.+.+++.. +..
T Consensus 76 ~~ii~v~d~~~~~s-~~~l~~~~~~--------------------------------------------~~~-------- 102 (166)
T cd01869 76 HGIIIVYDVTDQES-FNNVKQWLQE--------------------------------------------IDR-------- 102 (166)
T ss_pred CEEEEEEECcCHHH-HHhHHHHHHH--------------------------------------------HHH--------
Confidence 88888888766432 2222222211 110
Q ss_pred cCCCHHHHHHHHhccccccceEEEeecCCCCChh-----hHHHHhc--CCCEEEeccccccchHHHHHHHHHHh
Q 018394 178 EDATVDDLIDVIEGNRKYMKCVYVYNKIDVIGID-----DVDKLAR--QPNSVVISCNLKLNLDRLLARMWEEM 244 (356)
Q Consensus 178 hd~~~~~~~~~i~~~~~~~p~i~v~NK~Dl~~~~-----~~~~l~~--~~~~i~iSa~~~~~l~~L~~~i~~~l 244 (356)
. .....|.++|.||+|+.... +...+.. ..+++++||++|.|++++.+.+.+.+
T Consensus 103 -----------~--~~~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~ 163 (166)
T cd01869 103 -----------Y--ASENVNKLLVGNKCDLTDKRVVDYSEAQEFADELGIPFLETSAKNATNVEQAFMTMAREI 163 (166)
T ss_pred -----------h--CCCCCcEEEEEEChhcccccCCCHHHHHHHHHHcCCeEEEEECCCCcCHHHHHHHHHHHH
Confidence 0 01135999999999986432 2222222 23589999999999999999887754
No 454
>KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis]
Probab=99.47 E-value=1.5e-13 Score=131.78 Aligned_cols=160 Identities=19% Similarity=0.191 Sum_probs=103.7
Q ss_pred CCCCeEEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCccccccccccccceEEEECCE-eecccCccccccccccCccc
Q 018394 8 AGEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDT-KIQLLDLPGIIEGASEGKGR 86 (356)
Q Consensus 8 ~~~s~~v~~~~g~~v~LvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~-~i~~~D~pGl~~~~~~~~~~ 86 (356)
..++|-|.- ..+||||||||+||||||..|+|...| +.|.+.-+-. .|-..|- . .
T Consensus 604 kkldFGiDm--dSRiaIVGPNGVGKSTlLkLL~Gkl~P-----------~~GE~RKnhrL~iG~FdQ------h-~---- 659 (807)
T KOG0066|consen 604 KKLDFGIDM--DSRIAIVGPNGVGKSTLLKLLIGKLDP-----------NDGELRKNHRLRIGWFDQ------H-A---- 659 (807)
T ss_pred hcccccccc--cceeEEECCCCccHHHHHHHHhcCCCC-----------Ccchhhccceeeeechhh------h-h----
Confidence 345666666 569999999999999999999999755 7887764432 1111110 0 0
Q ss_pred cccccccccchhHHHHHHhcCChHHHHHHHHHHHHHccCc--cc-cccCcccccceecccee---------eeecCCCCC
Q 018394 87 GRQVIAVSKSSDIVLMVLDASKSEGHRQILTKELEAVGLR--LN-KRPPQIYFKKKKTGGIS---------FNSTLPLTH 154 (356)
Q Consensus 87 ~~~~~~~~~~~d~i~~v~d~~~~~~~~~~i~~~L~~~~i~--l~-~~~~~lS~g~~qr~~ia---------l~~DEp~~~ 154 (356)
.+.+. -.-.-+.++...++. ..+.++..|-.+|+. .+ -....||+|++-|+.++ +++||||++
T Consensus 660 -~E~L~--~Eetp~EyLqr~FNl--pyq~ARK~LG~fGL~sHAHTikikdLSGGQKaRValaeLal~~PDvlILDEPTNN 734 (807)
T KOG0066|consen 660 -NEALN--GEETPVEYLQRKFNL--PYQEARKQLGTFGLASHAHTIKIKDLSGGQKARVALAELALGGPDVLILDEPTNN 734 (807)
T ss_pred -HHhhc--cccCHHHHHHHhcCC--ChHHHHHHhhhhhhhhccceEeeeecCCcchHHHHHHHHhcCCCCEEEecCCCCC
Confidence 00010 001112233333322 234567778888882 22 24678999999999887 999999999
Q ss_pred CCHHHHHHHHHHhcc-cCcEEEEccCCCHHHHHHHHhccccccceEEEeec
Q 018394 155 VDEKLCYQILHEYKI-HNAEVLFREDATVDDLIDVIEGNRKYMKCVYVYNK 204 (356)
Q Consensus 155 LD~~~~~~il~~l~~-~~~~i~~thd~~~~~~~~~i~~~~~~~p~i~v~NK 204 (356)
||.+++..+-+.++. ...+||++||..+.. ...|...+|-|.
T Consensus 735 LDIESIDALaEAIney~GgVi~VsHDeRLi~--------eT~C~LwVvE~Q 777 (807)
T KOG0066|consen 735 LDIESIDALAEAINEYNGGVIMVSHDERLIV--------ETDCNLWVVENQ 777 (807)
T ss_pred cchhhHHHHHHHHHhccCcEEEEecccceee--------ecCceEEEEccC
Confidence 999998877777774 458999999975421 223555666554
No 455
>KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.47 E-value=2.2e-13 Score=148.28 Aligned_cols=164 Identities=18% Similarity=0.226 Sum_probs=112.8
Q ss_pred CCCCeEEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCccccccccccccceEEEECCEeecccCccccccccccCcccc
Q 018394 8 AGEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRG 87 (356)
Q Consensus 8 ~~~s~~v~~~~g~~v~LvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~~D~pGl~~~~~~~~~~~ 87 (356)
++++|++++ |+.+|++|+.||||||||.+|+|.... .+|.+.++|. +.. +
T Consensus 538 ~dIn~~i~~--G~lvaVvG~vGsGKSSLL~AiLGEm~~-----------~sG~v~v~gs-iaY----------------v 587 (1381)
T KOG0054|consen 538 KDINFEIKK--GQLVAVVGPVGSGKSSLLSAILGEMPK-----------LSGSVAVNGS-VAY----------------V 587 (1381)
T ss_pred cceeEEecC--CCEEEEECCCCCCHHHHHHHHhcCccc-----------ccceEEEcCe-EEE----------------e
Confidence 689999999 889999999999999999999999877 7899999886 111 1
Q ss_pred cccccccc--chhHHHHHHhcCChHHHHHHHHHHHHHccC-------------ccccccCcccccceecccee-------
Q 018394 88 RQVIAVSK--SSDIVLMVLDASKSEGHRQILTKELEAVGL-------------RLNKRPPQIYFKKKKTGGIS------- 145 (356)
Q Consensus 88 ~~~~~~~~--~~d~i~~v~d~~~~~~~~~~i~~~L~~~~i-------------~l~~~~~~lS~g~~qr~~ia------- 145 (356)
.|.+..+. --|+|+|.-. -+.++-++.++.+.+ .+..+--+||||||||+.+|
T Consensus 588 ~Q~pWI~ngTvreNILFG~~-----~d~~rY~~Vi~aC~L~~Dle~Lp~GD~TeIGErGinLSGGQKqRIsLARAVY~~a 662 (1381)
T KOG0054|consen 588 PQQPWIQNGTVRENILFGSP-----YDEERYDKVIKACALKKDLEILPFGDLTEIGERGINLSGGQKQRISLARAVYQDA 662 (1381)
T ss_pred ccccHhhCCcHHHhhhcCcc-----ccHHHHHHHHHHccCHhHHhhcCCCCcceecCCccCCcHhHHHHHHHHHHHhccC
Confidence 22222221 1455555321 122333333333322 34455678999999999998
Q ss_pred --eeecCCCCCCCHHHHHHHHHH----hcccCcEEEEccCCCHHHHHHHHhccccccceEEEeecCCCCChhhHHHH
Q 018394 146 --FNSTLPLTHVDEKLCYQILHE----YKIHNAEVLFREDATVDDLIDVIEGNRKYMKCVYVYNKIDVIGIDDVDKL 216 (356)
Q Consensus 146 --l~~DEp~~~LD~~~~~~il~~----l~~~~~~i~~thd~~~~~~~~~i~~~~~~~p~i~v~NK~Dl~~~~~~~~l 216 (356)
+++|.|++++|...-+.++++ +-.++|+|++||....-. ....|+++...-+......+++
T Consensus 663 dIYLLDDplSAVDahvg~~if~~ci~~~L~~KT~ILVTHql~~L~----------~ad~Iivl~~G~I~~~Gty~el 729 (1381)
T KOG0054|consen 663 DIYLLDDPLSAVDAHVGKHIFEECIRGLLRGKTVILVTHQLQFLP----------HADQIIVLKDGKIVESGTYEEL 729 (1381)
T ss_pred CEEEEcCcchhhhHhhhHHHHHHHHHhhhcCCEEEEEeCchhhhh----------hCCEEEEecCCeEecccCHHHH
Confidence 999999999999885555443 335679999999654322 2467888877665544444444
No 456
>cd04153 Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date.
Probab=99.46 E-value=1.3e-13 Score=120.27 Aligned_cols=81 Identities=19% Similarity=0.248 Sum_probs=57.6
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHcCCCCccccccccccccceEEEECCEeecccCccccccccccCccccccccccccchh
Q 018394 19 HGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQVIAVSKSSD 98 (356)
Q Consensus 19 g~~v~LvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~~D~pGl~~~~~~~~~~~~~~~~~~~~~d 98 (356)
...|+++|++|||||||++.|++.... . +..|..+..+.+.+++..+.++|+||..... ......++.+|
T Consensus 15 ~~kv~~~G~~~~GKTsl~~~l~~~~~~-~--~~~t~~~~~~~~~~~~~~~~l~D~~G~~~~~-------~~~~~~~~~~d 84 (174)
T cd04153 15 EYKVIIVGLDNAGKTTILYQFLLGEVV-H--TSPTIGSNVEEIVYKNIRFLMWDIGGQESLR-------SSWNTYYTNTD 84 (174)
T ss_pred ccEEEEECCCCCCHHHHHHHHccCCCC-C--cCCccccceEEEEECCeEEEEEECCCCHHHH-------HHHHHHhhcCC
Confidence 358999999999999999999865422 1 2345555667788888899999999963211 11122356788
Q ss_pred HHHHHHhcCCh
Q 018394 99 IVLMVLDASKS 109 (356)
Q Consensus 99 ~i~~v~d~~~~ 109 (356)
++++|+|.+..
T Consensus 85 ~vi~V~D~s~~ 95 (174)
T cd04153 85 AVILVIDSTDR 95 (174)
T ss_pred EEEEEEECCCH
Confidence 88888887654
No 457
>cd04166 CysN_ATPS CysN_ATPS subfamily. CysN, together with protein CysD, form the ATP sulfurylase (ATPS) complex in some bacteria and lower eukaryotes. ATPS catalyzes the production of ATP sulfurylase (APS) and pyrophosphate (PPi) from ATP and sulfate. CysD, which catalyzes ATP hydrolysis, is a member of the ATP pyrophosphatase (ATP PPase) family. CysN hydrolysis of GTP is required for CysD hydrolysis of ATP; however, CysN hydrolysis of GTP is not dependent on CysD hydrolysis of ATP. CysN is an example of lateral gene transfer followed by acquisition of new function. In many organisms, an ATPS exists which is not GTP-dependent and shares no sequence or structural similarity to CysN.
Probab=99.46 E-value=3.9e-14 Score=127.48 Aligned_cols=82 Identities=22% Similarity=0.241 Sum_probs=60.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCcc-------------------------------ccccccccccceEEEECCEeec
Q 018394 21 RVALIGFPSVGKSTLLTLLTGTHSEAA-------------------------------SYEFTTLTCIPGIIHYNDTKIQ 69 (356)
Q Consensus 21 ~v~LvG~~gaGKSTLln~L~g~~~~vs-------------------------------~~p~TT~~~~~G~i~~~g~~i~ 69 (356)
+|+|+|.+|||||||+++|++....+. ..+|+|+++....+.+++.++.
T Consensus 1 ~i~iiG~~~~GKStL~~~Ll~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~~~~~~~ 80 (208)
T cd04166 1 RFLTCGSVDDGKSTLIGRLLYDSKSIFEDQLAALESKSCGTGGEPLDLALLVDGLQAEREQGITIDVAYRYFSTPKRKFI 80 (208)
T ss_pred CEEEEECCCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCCcceeeeccCChhhhcCCcCeecceeEEecCCceEE
Confidence 489999999999999999986543222 1278999999999989999999
Q ss_pred ccCccccccccccCccccccccccccchhHHHHHHhcCCh
Q 018394 70 LLDLPGIIEGASEGKGRGRQVIAVSKSSDIVLMVLDASKS 109 (356)
Q Consensus 70 ~~D~pGl~~~~~~~~~~~~~~~~~~~~~d~i~~v~d~~~~ 109 (356)
++||||..... ......++.+|++++|+|+..+
T Consensus 81 liDTpG~~~~~-------~~~~~~~~~ad~~llVvD~~~~ 113 (208)
T cd04166 81 IADTPGHEQYT-------RNMVTGASTADLAILLVDARKG 113 (208)
T ss_pred EEECCcHHHHH-------HHHHHhhhhCCEEEEEEECCCC
Confidence 99999964311 1122234667777777776543
No 458
>smart00175 RAB Rab subfamily of small GTPases. Rab GTPases are implicated in vesicle trafficking.
Probab=99.46 E-value=2.4e-13 Score=116.26 Aligned_cols=151 Identities=20% Similarity=0.192 Sum_probs=97.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCccccccccccccceEEEECC--EeecccCccccccccccCccccccccccccchh
Q 018394 21 RVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYND--TKIQLLDLPGIIEGASEGKGRGRQVIAVSKSSD 98 (356)
Q Consensus 21 ~v~LvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g--~~i~~~D~pGl~~~~~~~~~~~~~~~~~~~~~d 98 (356)
.|+++|++|||||||++.+++........|.++.+...-.+.+++ ..+.++|+||..... ......+..+|
T Consensus 2 kv~v~G~~~~GKTtli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~-------~~~~~~~~~~d 74 (164)
T smart00175 2 KIILIGDSGVGKSSLLSRFTDGKFSEQYKSTIGVDFKTKTIEVDGKRVKLQIWDTAGQERFR-------SITSSYYRGAV 74 (164)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCChHHHH-------HHHHHHhCCCC
Confidence 689999999999999999998875545556666655556677777 457789999853211 01112346678
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHHccCccccccCcccccceeccceeeeecCCCCCCCHHHHHHHHHHhcccCcEEEEcc
Q 018394 99 IVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNAEVLFRE 178 (356)
Q Consensus 99 ~i~~v~d~~~~~~~~~~i~~~L~~~~i~l~~~~~~lS~g~~qr~~ial~~DEp~~~LD~~~~~~il~~l~~~~~~i~~th 178 (356)
++++++|...+... +.+..++ ..+...
T Consensus 75 ~~ilv~d~~~~~s~-~~~~~~l--------------------------------------------~~~~~~-------- 101 (164)
T smart00175 75 GALLVYDITNRESF-ENLKNWL--------------------------------------------KELREY-------- 101 (164)
T ss_pred EEEEEEECCCHHHH-HHHHHHH--------------------------------------------HHHHHh--------
Confidence 88888777654322 1121122 111100
Q ss_pred CCCHHHHHHHHhccccccceEEEeecCCCCChh-----hHHHHhc--CCCEEEeccccccchHHHHHHHHHHh
Q 018394 179 DATVDDLIDVIEGNRKYMKCVYVYNKIDVIGID-----DVDKLAR--QPNSVVISCNLKLNLDRLLARMWEEM 244 (356)
Q Consensus 179 d~~~~~~~~~i~~~~~~~p~i~v~NK~Dl~~~~-----~~~~l~~--~~~~i~iSa~~~~~l~~L~~~i~~~l 244 (356)
.....|+++|+||+|+.... ....+.+ ..+++++||.++.|++++.+.|.+.+
T Consensus 102 -------------~~~~~pivvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~l~~~i~~~~ 161 (164)
T smart00175 102 -------------ADPNVVIMLVGNKSDLEDQRQVSREEAEAFAEEHGLPFFETSAKTNTNVEEAFEELAREI 161 (164)
T ss_pred -------------CCCCCeEEEEEEchhcccccCCCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHHH
Confidence 01136999999999986422 2222222 23489999999999999999988765
No 459
>cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi
Probab=99.45 E-value=2.4e-13 Score=117.50 Aligned_cols=152 Identities=16% Similarity=0.157 Sum_probs=95.1
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcCCCCccccccccccccceEEEECCE--eecccCccccccccccCccccccccccccch
Q 018394 20 GRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDT--KIQLLDLPGIIEGASEGKGRGRQVIAVSKSS 97 (356)
Q Consensus 20 ~~v~LvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~--~i~~~D~pGl~~~~~~~~~~~~~~~~~~~~~ 97 (356)
.+|+++|++|||||||++.+++........|.++.+.....+.+++. .+.++|+||...... .....++++
T Consensus 4 ~ki~vvG~~~~GKSsl~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~-------~~~~~~~~a 76 (167)
T cd01867 4 FKLLLIGDSGVGKSCLLLRFSEDSFNPSFISTIGIDFKIRTIELDGKKIKLQIWDTAGQERFRT-------ITTAYYRGA 76 (167)
T ss_pred eEEEEECCCCCCHHHHHHHHhhCcCCcccccCccceEEEEEEEECCEEEEEEEEeCCchHHHHH-------HHHHHhCCC
Confidence 47999999999999999999987643333344444444455667775 467889998532111 112235678
Q ss_pred hHHHHHHhcCChHHHHHHHHHHHHHccCccccccCcccccceeccceeeeecCCCCCCCHHHHHHHHHHhcccCcEEEEc
Q 018394 98 DIVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNAEVLFR 177 (356)
Q Consensus 98 d~i~~v~d~~~~~~~~~~i~~~L~~~~i~l~~~~~~lS~g~~qr~~ial~~DEp~~~LD~~~~~~il~~l~~~~~~i~~t 177 (356)
|++++++|...+.. .+.+.+++.. +..
T Consensus 77 d~~i~v~d~~~~~s-~~~~~~~~~~--------------------------------------------i~~-------- 103 (167)
T cd01867 77 MGIILVYDITDEKS-FENIRNWMRN--------------------------------------------IEE-------- 103 (167)
T ss_pred CEEEEEEECcCHHH-HHhHHHHHHH--------------------------------------------HHH--------
Confidence 88888887755322 2222222211 110
Q ss_pred cCCCHHHHHHHHhccccccceEEEeecCCCCChh-----hHHHHhc--CCCEEEeccccccchHHHHHHHHHHh
Q 018394 178 EDATVDDLIDVIEGNRKYMKCVYVYNKIDVIGID-----DVDKLAR--QPNSVVISCNLKLNLDRLLARMWEEM 244 (356)
Q Consensus 178 hd~~~~~~~~~i~~~~~~~p~i~v~NK~Dl~~~~-----~~~~l~~--~~~~i~iSa~~~~~l~~L~~~i~~~l 244 (356)
. .....|+++|.||+|+.... +...+.. ..+++++||+++.|++++.+.+.+.+
T Consensus 104 -----------~--~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~ 164 (167)
T cd01867 104 -----------H--ASEDVERMLVGNKCDMEEKRVVSKEEGEALADEYGIKFLETSAKANINVEEAFFTLAKDI 164 (167)
T ss_pred -----------h--CCCCCcEEEEEECcccccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHH
Confidence 0 01135999999999997321 2222221 23579999999999999998887654
No 460
>cd01862 Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-
Probab=99.45 E-value=3e-13 Score=116.72 Aligned_cols=155 Identities=15% Similarity=0.198 Sum_probs=92.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCccccccccccccceEEEECCEe--ecccCccccccccccCccccccccccccchh
Q 018394 21 RVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTK--IQLLDLPGIIEGASEGKGRGRQVIAVSKSSD 98 (356)
Q Consensus 21 ~v~LvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~--i~~~D~pGl~~~~~~~~~~~~~~~~~~~~~d 98 (356)
.|+++|++|||||||+|++++........|-.+.+.....+.+++.. +.++|+||..... ......++.+|
T Consensus 2 ki~viG~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~-------~~~~~~~~~~d 74 (172)
T cd01862 2 KVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVTVDDKLVTLQIWDTAGQERFQ-------SLGVAFYRGAD 74 (172)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCcCcCCccceEEEEEEEEECCEEEEEEEEeCCChHHHH-------hHHHHHhcCCC
Confidence 68999999999999999999875432222222334444556677754 4578999853211 11122356678
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHHccCccccccCcccccceeccceeeeecCCCCCCCHHHHHHHHHHhcccCcEEEEcc
Q 018394 99 IVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNAEVLFRE 178 (356)
Q Consensus 99 ~i~~v~d~~~~~~~~~~i~~~L~~~~i~l~~~~~~lS~g~~qr~~ial~~DEp~~~LD~~~~~~il~~l~~~~~~i~~th 178 (356)
.+++++|...+... +.+..+.. .++....
T Consensus 75 ~~i~v~d~~~~~~~-~~~~~~~~----------------------------------------~~~~~~~---------- 103 (172)
T cd01862 75 CCVLVYDVTNPKSF-ESLDSWRD----------------------------------------EFLIQAS---------- 103 (172)
T ss_pred EEEEEEECCCHHHH-HHHHHHHH----------------------------------------HHHHhcC----------
Confidence 77777776654321 11111110 0111000
Q ss_pred CCCHHHHHHHHhccccccceEEEeecCCCCC-----hhhHHHHhc---CCCEEEeccccccchHHHHHHHHHHh
Q 018394 179 DATVDDLIDVIEGNRKYMKCVYVYNKIDVIG-----IDDVDKLAR---QPNSVVISCNLKLNLDRLLARMWEEM 244 (356)
Q Consensus 179 d~~~~~~~~~i~~~~~~~p~i~v~NK~Dl~~-----~~~~~~l~~---~~~~i~iSa~~~~~l~~L~~~i~~~l 244 (356)
......+|.++|+||+|+.. .++...+.+ ...++++||.+|.|++++.+.+.+.+
T Consensus 104 -----------~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~i~~~~ 166 (172)
T cd01862 104 -----------PSDPENFPFVVLGNKIDLEEKRQVSTKKAQQWCQSNGNIPYFETSAKEAINVEQAFETIARKA 166 (172)
T ss_pred -----------ccCCCCceEEEEEECcccccccccCHHHHHHHHHHcCCceEEEEECCCCCCHHHHHHHHHHHH
Confidence 00112469999999999972 223333322 24588999999999999999887654
No 461
>cd04112 Rab26 Rab26 subfamily. First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.45 E-value=2.7e-13 Score=120.12 Aligned_cols=153 Identities=20% Similarity=0.215 Sum_probs=97.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCccccccccccccce-EEEECCE--eecccCccccccccccCccccccccccccch
Q 018394 21 RVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPG-IIHYNDT--KIQLLDLPGIIEGASEGKGRGRQVIAVSKSS 97 (356)
Q Consensus 21 ~v~LvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G-~i~~~g~--~i~~~D~pGl~~~~~~~~~~~~~~~~~~~~~ 97 (356)
.|+|+|++|||||||++.+++......+++.|+...... .+.+++. .+.++||||-..... .....++.+
T Consensus 2 Ki~vvG~~~vGKTSli~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~-------~~~~~~~~a 74 (191)
T cd04112 2 KVMLLGDSGVGKTCLLVRFKDGAFLNGNFIATVGIDFRNKVVTVDGVKVKLQIWDTAGQERFRS-------VTHAYYRDA 74 (191)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCccCcCCcccceeEEEEEEECCEEEEEEEEeCCCcHHHHH-------hhHHHccCC
Confidence 689999999999999999998776555665555433333 4667774 566789998422110 111235678
Q ss_pred hHHHHHHhcCChHHHHHHHHHHHHHccCccccccCcccccceeccceeeeecCCCCCCCHHHHHHHHHHhcccCcEEEEc
Q 018394 98 DIVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNAEVLFR 177 (356)
Q Consensus 98 d~i~~v~d~~~~~~~~~~i~~~L~~~~i~l~~~~~~lS~g~~qr~~ial~~DEp~~~LD~~~~~~il~~l~~~~~~i~~t 177 (356)
|++++++|...... .+.+..++.. +.
T Consensus 75 d~~i~v~D~~~~~s-~~~~~~~~~~--------------------------------------------i~--------- 100 (191)
T cd04112 75 HALLLLYDITNKAS-FDNIRAWLTE--------------------------------------------IK--------- 100 (191)
T ss_pred CEEEEEEECCCHHH-HHHHHHHHHH--------------------------------------------HH---------
Confidence 88888888765422 1112211111 10
Q ss_pred cCCCHHHHHHHHhccccccceEEEeecCCCCCh-----hhHHHHhc--CCCEEEeccccccchHHHHHHHHHHhCc
Q 018394 178 EDATVDDLIDVIEGNRKYMKCVYVYNKIDVIGI-----DDVDKLAR--QPNSVVISCNLKLNLDRLLARMWEEMGL 246 (356)
Q Consensus 178 hd~~~~~~~~~i~~~~~~~p~i~v~NK~Dl~~~-----~~~~~l~~--~~~~i~iSa~~~~~l~~L~~~i~~~l~~ 246 (356)
.. .....|+++|+||+|+... ++...+.. ..+++++||++|.|+++|.+.+.+.+..
T Consensus 101 ----------~~--~~~~~piiiv~NK~Dl~~~~~~~~~~~~~l~~~~~~~~~e~Sa~~~~~v~~l~~~l~~~~~~ 164 (191)
T cd04112 101 ----------EY--AQEDVVIMLLGNKADMSGERVVKREDGERLAKEYGVPFMETSAKTGLNVELAFTAVAKELKH 164 (191)
T ss_pred ----------Hh--CCCCCcEEEEEEcccchhccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHHHHH
Confidence 00 1113599999999998632 23333332 2358999999999999999999876643
No 462
>cd04154 Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis.
Probab=99.45 E-value=1.6e-13 Score=119.40 Aligned_cols=147 Identities=20% Similarity=0.209 Sum_probs=91.1
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcCCCCccccccccccccceEEEECCEeecccCccccccccccCccccccccccccchhH
Q 018394 20 GRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQVIAVSKSSDI 99 (356)
Q Consensus 20 ~~v~LvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~~D~pGl~~~~~~~~~~~~~~~~~~~~~d~ 99 (356)
..|+++|++|||||||++.+++.... .+ -.|.......+.+++..+.++|+||...... .....++.+|.
T Consensus 15 ~kv~ivG~~~~GKTsL~~~l~~~~~~--~~-~~t~g~~~~~~~~~~~~l~l~D~~G~~~~~~-------~~~~~~~~~d~ 84 (173)
T cd04154 15 MRILILGLDNAGKTTILKKLLGEDID--TI-SPTLGFQIKTLEYEGYKLNIWDVGGQKTLRP-------YWRNYFESTDA 84 (173)
T ss_pred cEEEEECCCCCCHHHHHHHHccCCCC--Cc-CCccccceEEEEECCEEEEEEECCCCHHHHH-------HHHHHhCCCCE
Confidence 58999999999999999999987421 11 1122233445677888899999998632110 11123567888
Q ss_pred HHHHHhcCChHHHHHHHHHHHHHccCccccccCcccccceeccceeeeecCCCCCCCHHHHHHHHHHhcccCcEEEEccC
Q 018394 100 VLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNAEVLFRED 179 (356)
Q Consensus 100 i~~v~d~~~~~~~~~~i~~~L~~~~i~l~~~~~~lS~g~~qr~~ial~~DEp~~~LD~~~~~~il~~l~~~~~~i~~thd 179 (356)
+++|+|........ .+..++. .++..
T Consensus 85 ~i~v~d~~~~~s~~-~~~~~~~----------------------------------------~~~~~------------- 110 (173)
T cd04154 85 LIWVVDSSDRLRLD-DCKRELK----------------------------------------ELLQE------------- 110 (173)
T ss_pred EEEEEECCCHHHHH-HHHHHHH----------------------------------------HHHhC-------------
Confidence 88888876642211 1111111 11100
Q ss_pred CCHHHHHHHHhccccccceEEEeecCCCCCh---hhHHHHhc-------CCCEEEeccccccchHHHHHHHH
Q 018394 180 ATVDDLIDVIEGNRKYMKCVYVYNKIDVIGI---DDVDKLAR-------QPNSVVISCNLKLNLDRLLARMW 241 (356)
Q Consensus 180 ~~~~~~~~~i~~~~~~~p~i~v~NK~Dl~~~---~~~~~l~~-------~~~~i~iSa~~~~~l~~L~~~i~ 241 (356)
......|+++|+||+|+... +++..... ..+++++||++|.|++++.+.+.
T Consensus 111 -----------~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~ 171 (173)
T cd04154 111 -----------ERLAGATLLILANKQDLPGALSEEEIREALELDKISSHHWRIQPCSAVTGEGLLQGIDWLV 171 (173)
T ss_pred -----------hhhcCCCEEEEEECcccccCCCHHHHHHHhCccccCCCceEEEeccCCCCcCHHHHHHHHh
Confidence 00113699999999998643 33333321 12488999999999999988764
No 463
>cd01866 Rab2 Rab2 subfamily. Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur
Probab=99.44 E-value=3.3e-13 Score=116.81 Aligned_cols=152 Identities=19% Similarity=0.167 Sum_probs=95.5
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcCCCCccccccccccccceEEEECCE--eecccCccccccccccCccccccccccccch
Q 018394 20 GRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDT--KIQLLDLPGIIEGASEGKGRGRQVIAVSKSS 97 (356)
Q Consensus 20 ~~v~LvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~--~i~~~D~pGl~~~~~~~~~~~~~~~~~~~~~ 97 (356)
..++|+|++|||||||++.+++........|.++.+.....+.+++. .+.++|+||..... ......++.+
T Consensus 5 ~ki~vvG~~~vGKSsLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~-------~~~~~~~~~~ 77 (168)
T cd01866 5 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIWDTAGQESFR-------SITRSYYRGA 77 (168)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHHHH-------HHHHHHhccC
Confidence 47999999999999999999987644333344455555566777763 56788999843211 1112234667
Q ss_pred hHHHHHHhcCChHHHHHHHHHHHHHccCccccccCcccccceeccceeeeecCCCCCCCHHHHHHHHHHhcccCcEEEEc
Q 018394 98 DIVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNAEVLFR 177 (356)
Q Consensus 98 d~i~~v~d~~~~~~~~~~i~~~L~~~~i~l~~~~~~lS~g~~qr~~ial~~DEp~~~LD~~~~~~il~~l~~~~~~i~~t 177 (356)
|++++++|...+.. .+.+..++ ..+..
T Consensus 78 d~il~v~d~~~~~s-~~~~~~~~--------------------------------------------~~~~~-------- 104 (168)
T cd01866 78 AGALLVYDITRRET-FNHLTSWL--------------------------------------------EDARQ-------- 104 (168)
T ss_pred CEEEEEEECCCHHH-HHHHHHHH--------------------------------------------HHHHH--------
Confidence 88888888765322 22222222 11110
Q ss_pred cCCCHHHHHHHHhccccccceEEEeecCCCCCh-----hhHHHHhc--CCCEEEeccccccchHHHHHHHHHHh
Q 018394 178 EDATVDDLIDVIEGNRKYMKCVYVYNKIDVIGI-----DDVDKLAR--QPNSVVISCNLKLNLDRLLARMWEEM 244 (356)
Q Consensus 178 hd~~~~~~~~~i~~~~~~~p~i~v~NK~Dl~~~-----~~~~~l~~--~~~~i~iSa~~~~~l~~L~~~i~~~l 244 (356)
......|+++|.||+|+... ++...+.. ...++++||.++.|++++.+.+.+.+
T Consensus 105 -------------~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~~~~~~~~~~ 165 (168)
T cd01866 105 -------------HSNSNMTIMLIGNKCDLESRREVSYEEGEAFAKEHGLIFMETSAKTASNVEEAFINTAKEI 165 (168)
T ss_pred -------------hCCCCCcEEEEEECcccccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHH
Confidence 00124699999999998632 22222321 23578999999999999888776654
No 464
>cd01863 Rab18 Rab18 subfamily. Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of mos
Probab=99.44 E-value=5e-13 Score=114.28 Aligned_cols=151 Identities=19% Similarity=0.210 Sum_probs=91.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCccccccccccccceEEEECC--EeecccCccccccccccCccccccccccccchh
Q 018394 21 RVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYND--TKIQLLDLPGIIEGASEGKGRGRQVIAVSKSSD 98 (356)
Q Consensus 21 ~v~LvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g--~~i~~~D~pGl~~~~~~~~~~~~~~~~~~~~~d 98 (356)
+++++|++|||||||+++|++........|-.+.+.....+.+++ ..+.++|+||...... .....++.+|
T Consensus 2 ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~-------~~~~~~~~~d 74 (161)
T cd01863 2 KILLIGDSGVGKSSLLLRFTDDTFDPDLAATIGVDFKVKTLTVDGKKVKLAIWDTAGQERFRT-------LTSSYYRGAQ 74 (161)
T ss_pred EEEEECCCCCCHHHHHHHHHcCCCCcccCCcccceEEEEEEEECCEEEEEEEEECCCchhhhh-------hhHHHhCCCC
Confidence 689999999999999999998764332223333333333455555 4567889998532111 1112346788
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHHccCccccccCcccccceeccceeeeecCCCCCCCHHHHHHHHHHhcccCcEEEEcc
Q 018394 99 IVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNAEVLFRE 178 (356)
Q Consensus 99 ~i~~v~d~~~~~~~~~~i~~~L~~~~i~l~~~~~~lS~g~~qr~~ial~~DEp~~~LD~~~~~~il~~l~~~~~~i~~th 178 (356)
.+++++|...+..- +.+..++..+ ..+
T Consensus 75 ~~i~v~d~~~~~s~-~~~~~~~~~i-----------------------------------------~~~----------- 101 (161)
T cd01863 75 GVILVYDVTRRDTF-TNLETWLNEL-----------------------------------------ETY----------- 101 (161)
T ss_pred EEEEEEECCCHHHH-HhHHHHHHHH-----------------------------------------HHh-----------
Confidence 88888887654321 1122111110 000
Q ss_pred CCCHHHHHHHHhccccccceEEEeecCCCCCh----hhHHHHhc--CCCEEEeccccccchHHHHHHHHHH
Q 018394 179 DATVDDLIDVIEGNRKYMKCVYVYNKIDVIGI----DDVDKLAR--QPNSVVISCNLKLNLDRLLARMWEE 243 (356)
Q Consensus 179 d~~~~~~~~~i~~~~~~~p~i~v~NK~Dl~~~----~~~~~l~~--~~~~i~iSa~~~~~l~~L~~~i~~~ 243 (356)
......|.++|.||+|+... ++...+.. ...++++||++|.|++++.+.+.+.
T Consensus 102 ------------~~~~~~~~~iv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~~~~~ 160 (161)
T cd01863 102 ------------STNNDIVKMLVGNKIDKENREVTREEGLKFARKHNMLFIETSAKTRDGVQQAFEELVEK 160 (161)
T ss_pred ------------CCCCCCcEEEEEECCcccccccCHHHHHHHHHHcCCEEEEEecCCCCCHHHHHHHHHHh
Confidence 01123689999999999722 22222222 2348999999999999999888764
No 465
>cd04109 Rab28 Rab28 subfamily. First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumbly the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs
Probab=99.44 E-value=3.7e-13 Score=121.59 Aligned_cols=155 Identities=17% Similarity=0.186 Sum_probs=97.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCccccccccccccceEEEECC---EeecccCccccccccccCccccccccccccch
Q 018394 21 RVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYND---TKIQLLDLPGIIEGASEGKGRGRQVIAVSKSS 97 (356)
Q Consensus 21 ~v~LvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g---~~i~~~D~pGl~~~~~~~~~~~~~~~~~~~~~ 97 (356)
.|+|+|.+|||||||++.+++........|..+.|...-.+.+++ ..+.++|++|..... .+ ....++.+
T Consensus 2 Ki~ivG~~~vGKSsLi~~l~~~~~~~~~~~T~~~d~~~~~i~~~~~~~~~~~i~Dt~G~~~~~----~l---~~~~~~~a 74 (215)
T cd04109 2 KIVVLGDGAVGKTSLCRRFAKEGFGKSYKQTIGLDFFSKRVTLPGNLNVTLQVWDIGGQSIGG----KM---LDKYIYGA 74 (215)
T ss_pred EEEEECcCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEeCCCCEEEEEEEECCCcHHHH----HH---HHHHhhcC
Confidence 689999999999999999998654433345556676666677754 467889999852211 11 11235788
Q ss_pred hHHHHHHhcCChHHHHHHHHHHHHHccCccccccCcccccceeccceeeeecCCCCCCCHHHHHHHHHHhcccCcEEEEc
Q 018394 98 DIVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNAEVLFR 177 (356)
Q Consensus 98 d~i~~v~d~~~~~~~~~~i~~~L~~~~i~l~~~~~~lS~g~~qr~~ial~~DEp~~~LD~~~~~~il~~l~~~~~~i~~t 177 (356)
|++++|+|...+... +.+..+++. +..
T Consensus 75 d~iilV~D~t~~~s~-~~~~~w~~~--------------------------------------------l~~-------- 101 (215)
T cd04109 75 HAVFLVYDVTNSQSF-ENLEDWYSM--------------------------------------------VRK-------- 101 (215)
T ss_pred CEEEEEEECCCHHHH-HHHHHHHHH--------------------------------------------HHH--------
Confidence 999999888765321 222222211 100
Q ss_pred cCCCHHHHHHHHhccccccceEEEeecCCCCChh-----hHHHHhcC--CCEEEeccccccchHHHHHHHHHHhC
Q 018394 178 EDATVDDLIDVIEGNRKYMKCVYVYNKIDVIGID-----DVDKLARQ--PNSVVISCNLKLNLDRLLARMWEEMG 245 (356)
Q Consensus 178 hd~~~~~~~~~i~~~~~~~p~i~v~NK~Dl~~~~-----~~~~l~~~--~~~i~iSa~~~~~l~~L~~~i~~~l~ 245 (356)
.........|+++|.||+|+.... +...+.+. .+.+++||++|.|++++.+.+.+.+.
T Consensus 102 ----------~~~~~~~~~piilVgNK~DL~~~~~v~~~~~~~~~~~~~~~~~~iSAktg~gv~~lf~~l~~~l~ 166 (215)
T cd04109 102 ----------VLKSSETQPLVVLVGNKTDLEHNRTVKDDKHARFAQANGMESCLVSAKTGDRVNLLFQQLAAELL 166 (215)
T ss_pred ----------hccccCCCceEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHHH
Confidence 000001134789999999996322 22333321 24788999999999999999887654
No 466
>cd01865 Rab3 Rab3 subfamily. The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promot
Probab=99.44 E-value=3.7e-13 Score=116.03 Aligned_cols=151 Identities=19% Similarity=0.184 Sum_probs=90.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCccccccccccccceEEEECC--EeecccCccccccccccCccccccccccccchh
Q 018394 21 RVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYND--TKIQLLDLPGIIEGASEGKGRGRQVIAVSKSSD 98 (356)
Q Consensus 21 ~v~LvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g--~~i~~~D~pGl~~~~~~~~~~~~~~~~~~~~~d 98 (356)
.++++|++|||||||++.+++........|.++.+...-.+..++ ..+.++|+||...... .....++.+|
T Consensus 3 ki~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~g~~~~~~-------~~~~~~~~~~ 75 (165)
T cd01865 3 KLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRNDKRVKLQIWDTAGQERYRT-------ITTAYYRGAM 75 (165)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCChHHHHH-------HHHHHccCCc
Confidence 689999999999999999998753222223222222222344455 3577899998543211 1122356788
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHHccCccccccCcccccceeccceeeeecCCCCCCCHHHHHHHHHHhcccCcEEEEcc
Q 018394 99 IVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNAEVLFRE 178 (356)
Q Consensus 99 ~i~~v~d~~~~~~~~~~i~~~L~~~~i~l~~~~~~lS~g~~qr~~ial~~DEp~~~LD~~~~~~il~~l~~~~~~i~~th 178 (356)
.+++++|...... .+.+.+++.. +..
T Consensus 76 ~~l~v~d~~~~~s-~~~~~~~~~~--------------------------------------------i~~--------- 101 (165)
T cd01865 76 GFILMYDITNEES-FNAVQDWSTQ--------------------------------------------IKT--------- 101 (165)
T ss_pred EEEEEEECCCHHH-HHHHHHHHHH--------------------------------------------HHH---------
Confidence 8888877765322 2222222211 110
Q ss_pred CCCHHHHHHHHhccccccceEEEeecCCCCChh-----hHHHHhcC--CCEEEeccccccchHHHHHHHHHHh
Q 018394 179 DATVDDLIDVIEGNRKYMKCVYVYNKIDVIGID-----DVDKLARQ--PNSVVISCNLKLNLDRLLARMWEEM 244 (356)
Q Consensus 179 d~~~~~~~~~i~~~~~~~p~i~v~NK~Dl~~~~-----~~~~l~~~--~~~i~iSa~~~~~l~~L~~~i~~~l 244 (356)
. .....|.++|+||+|+.... +...+... .+++++||+++.|+++|.+.+.+.+
T Consensus 102 ----------~--~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~~ 162 (165)
T cd01865 102 ----------Y--SWDNAQVILVGNKCDMEDERVVSSERGRQLADQLGFEFFEASAKENINVKQVFERLVDII 162 (165)
T ss_pred ----------h--CCCCCCEEEEEECcccCcccccCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHH
Confidence 0 01135899999999986432 22223221 2488999999999999999887654
No 467
>cd01864 Rab19 Rab19 subfamily. Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.44 E-value=2.9e-13 Score=116.53 Aligned_cols=151 Identities=15% Similarity=0.123 Sum_probs=91.3
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcCCCCccccccccccccceEEEECCE--eecccCccccccccccCccccccccccccch
Q 018394 20 GRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDT--KIQLLDLPGIIEGASEGKGRGRQVIAVSKSS 97 (356)
Q Consensus 20 ~~v~LvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~--~i~~~D~pGl~~~~~~~~~~~~~~~~~~~~~ 97 (356)
..|+++|++|||||||++.+.+........+..+.+...-.+.+++. .+.++|+||..... ......++.+
T Consensus 4 ~kv~vvG~~~~GKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~-------~~~~~~~~~~ 76 (165)
T cd01864 4 FKIILIGDSNVGKTCVVQRFKSGTFSERQGNTIGVDFTMKTLEIEGKRVKLQIWDTAGQERFR-------TITQSYYRSA 76 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHhhCCCcccCCCccceEEEEEEEEECCEEEEEEEEECCChHHHH-------HHHHHHhccC
Confidence 47999999999999999999865422111122223344445667774 56788999953211 0111234667
Q ss_pred hHHHHHHhcCChHHHHHHHHHHHHHccCccccccCcccccceeccceeeeecCCCCCCCHHHHHHHHHHhcccCcEEEEc
Q 018394 98 DIVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNAEVLFR 177 (356)
Q Consensus 98 d~i~~v~d~~~~~~~~~~i~~~L~~~~i~l~~~~~~lS~g~~qr~~ial~~DEp~~~LD~~~~~~il~~l~~~~~~i~~t 177 (356)
|++++++|...+.. .+.+..++ ..+..
T Consensus 77 d~~llv~d~~~~~s-~~~~~~~~--------------------------------------------~~i~~-------- 103 (165)
T cd01864 77 NGAIIAYDITRRSS-FESVPHWI--------------------------------------------EEVEK-------- 103 (165)
T ss_pred CEEEEEEECcCHHH-HHhHHHHH--------------------------------------------HHHHH--------
Confidence 88888877765432 11122222 11110
Q ss_pred cCCCHHHHHHHHhccccccceEEEeecCCCCChh-----hHHHHhc---CCCEEEeccccccchHHHHHHHHHH
Q 018394 178 EDATVDDLIDVIEGNRKYMKCVYVYNKIDVIGID-----DVDKLAR---QPNSVVISCNLKLNLDRLLARMWEE 243 (356)
Q Consensus 178 hd~~~~~~~~~i~~~~~~~p~i~v~NK~Dl~~~~-----~~~~l~~---~~~~i~iSa~~~~~l~~L~~~i~~~ 243 (356)
. .....|.++|+||+|+.... +...+.+ ...++++||++|.|++++.+.+.+.
T Consensus 104 -----------~--~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~~~~l~~~ 164 (165)
T cd01864 104 -----------Y--GASNVVLLLIGNKCDLEEQREVLFEEACTLAEKNGMLAVLETSAKESQNVEEAFLLMATE 164 (165)
T ss_pred -----------h--CCCCCcEEEEEECcccccccccCHHHHHHHHHHcCCcEEEEEECCCCCCHHHHHHHHHHh
Confidence 0 01135899999999986432 2223322 2347999999999999999988764
No 468
>cd01669 TGS_Ygr210_C TGS_Ygr210_C: The C-terminal TGS domain of Ygr210 GTP-binding protein which is a member of Obg-like family of GTPases, and present in archaea. Several Obg-like family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. TGS is a small domain of about 50 amino acid residues with a predominantly beta-sheet structure. There is no direct information on the function of the TGS domain, but its presence in two types of regulatory proteins (the GTPases and guanosine polyphosphate phosphohydrolases/synthetases) suggests a ligand (most likely nucleotide)-binding, regulatory role.
Probab=99.44 E-value=2.3e-13 Score=102.07 Aligned_cols=57 Identities=25% Similarity=0.350 Sum_probs=52.7
Q ss_pred CCCccEEeecCCCCCCHHHHHHHHHHhHhhcCcEeEEeccCCccCCcccCCCceeCCCCeEEEEe
Q 018394 259 DFTEPVVLSVDRGGCTVEDFCNHIHRSLVKDVKYVLVWGTSARHYPQHCGLGHVLQDEDVVQIVK 323 (356)
Q Consensus 259 ~~~~~~~~~~~r~g~~v~~~a~~ih~~l~~~f~~a~~wg~s~~~~~~~vg~~~~l~d~Dvv~i~~ 323 (356)
.+++||++++ |+|+.|+|.+||++|.+.|++|++ ++ .||++|+||+|+|||||+|++
T Consensus 20 ~~~d~~~l~~---GaTv~D~A~~IHtdi~~~f~~Ai~----~k-~~~~vg~~~~L~dgDvV~Ii~ 76 (76)
T cd01669 20 VLPDAFLLPK---GSTARDLAYAIHTDIGDGFLHAID----AR-TGRRVGEDYELKHRDVIKIVS 76 (76)
T ss_pred CccceEEECC---CCCHHHHHHHHHHHHHhcceeeEE----ee-CCEEeCCCcEecCCCEEEEeC
Confidence 3678999999 999999999999999999999988 45 699999999999999999984
No 469
>cd01852 AIG1 AIG1 (avrRpt2-induced gene 1). This represents Arabidoposis protein AIG1 that appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 exhibits RPS2- and avrRpt1-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2. This subfamily also includes IAN-4 protein, which has GTP-binding activity and shares sequence homology with a novel family of putative GTP-binding proteins: the immuno-associated nucleotide (IAN) family. The evolutionary conservation of the IAN family provides a unique example of a plant pathogen response gene conserved in animals. The IAN/IMAP subfamily has been proposed to regulate apoptosis in vertebrates and angiosperm plants, particularly in relation to cancer, diabetes, and infections. The human IAN genes were renamed GIMAP (GTPase of the immunity associated proteins).
Probab=99.43 E-value=1.7e-13 Score=122.08 Aligned_cols=58 Identities=22% Similarity=0.411 Sum_probs=51.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCccc--cccccccccceEEEECCEeecccCcccccc
Q 018394 21 RVALIGFPSVGKSTLLTLLTGTHSEAAS--YEFTTLTCIPGIIHYNDTKIQLLDLPGIIE 78 (356)
Q Consensus 21 ~v~LvG~~gaGKSTLln~L~g~~~~vs~--~p~TT~~~~~G~i~~~g~~i~~~D~pGl~~ 78 (356)
.|+|+|+||||||||+|+|+|.....+. .+++|+++..+...++|..+.++||||+..
T Consensus 2 ~i~lvG~~g~GKSsl~N~ilg~~~~~~~~~~~~~T~~~~~~~~~~~~~~i~viDTPG~~d 61 (196)
T cd01852 2 RLVLVGKTGAGKSATGNTILGREVFESKLSASSVTKTCQKESAVWDGRRVNVIDTPGLFD 61 (196)
T ss_pred EEEEECCCCCCHHHHHHHhhCCCccccccCCCCcccccceeeEEECCeEEEEEECcCCCC
Confidence 6899999999999999999998754333 578999999999999999999999999864
No 470
>PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site. The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C ....
Probab=99.43 E-value=1.5e-13 Score=121.51 Aligned_cols=148 Identities=24% Similarity=0.273 Sum_probs=96.5
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcCCCCccc------------------cccccccccceEEE--ECCEeecccCccccccc
Q 018394 20 GRVALIGFPSVGKSTLLTLLTGTHSEAAS------------------YEFTTLTCIPGIIH--YNDTKIQLLDLPGIIEG 79 (356)
Q Consensus 20 ~~v~LvG~~gaGKSTLln~L~g~~~~vs~------------------~p~TT~~~~~G~i~--~~g~~i~~~D~pGl~~~ 79 (356)
..|+++|+.++|||||+++|++....+.+ ..+.|.+.....+. .++..+.++|+||....
T Consensus 4 ~~I~i~G~~~sGKTTL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~ti~~~~~~~~~~~~~~~i~~iDtPG~~~f 83 (188)
T PF00009_consen 4 RNIAIIGHVDSGKTTLLGALLGKAGAIDKRGIEETKNAFLDKHPEERERGITIDLSFISFEKNENNRKITLIDTPGHEDF 83 (188)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHHTSSSSHHHHHHHHCHHHSSHHHHHCTSSSSSEEEEEEBTESSEEEEEEEESSSHHH
T ss_pred EEEEEECCCCCCcEeechhhhhhccccccccccccccccccccchhhhcccccccccccccccccccceeecccccccce
Confidence 47999999999999999999966533221 23666766667777 78899999999995321
Q ss_pred cccCccccccccccccchhHHHHHHhcCChHHHHHHHHHHHHHccCccccccCcccccceeccceeeeecCCCCCCCHHH
Q 018394 80 ASEGKGRGRQVIAVSKSSDIVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKL 159 (356)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~d~i~~v~d~~~~~~~~~~i~~~L~~~~i~l~~~~~~lS~g~~qr~~ial~~DEp~~~LD~~~ 159 (356)
..+....++.+|.+++|+|+.......
T Consensus 84 -------~~~~~~~~~~~D~ailvVda~~g~~~~---------------------------------------------- 110 (188)
T PF00009_consen 84 -------IKEMIRGLRQADIAILVVDANDGIQPQ---------------------------------------------- 110 (188)
T ss_dssp -------HHHHHHHHTTSSEEEEEEETTTBSTHH----------------------------------------------
T ss_pred -------eecccceecccccceeeeecccccccc----------------------------------------------
Confidence 122333456677777777765432111
Q ss_pred HHHHHHHhcccCcEEEEccCCCHHHHHHHHhccccccceEEEeecCCCCChh---hHHHHh-------c-----CCCEEE
Q 018394 160 CYQILHEYKIHNAEVLFREDATVDDLIDVIEGNRKYMKCVYVYNKIDVIGID---DVDKLA-------R-----QPNSVV 224 (356)
Q Consensus 160 ~~~il~~l~~~~~~i~~thd~~~~~~~~~i~~~~~~~p~i~v~NK~Dl~~~~---~~~~l~-------~-----~~~~i~ 224 (356)
..+.+..+ . ....|.++|+||+|+...+ ..+++. . ..++++
T Consensus 111 ~~~~l~~~----------------------~--~~~~p~ivvlNK~D~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~vi~ 166 (188)
T PF00009_consen 111 TEEHLKIL----------------------R--ELGIPIIVVLNKMDLIEKELEEIIEEIKEKLLKEYGENGEEIVPVIP 166 (188)
T ss_dssp HHHHHHHH----------------------H--HTT-SEEEEEETCTSSHHHHHHHHHHHHHHHHHHTTSTTTSTEEEEE
T ss_pred cccccccc----------------------c--ccccceEEeeeeccchhhhHHHHHHHHHHHhccccccCccccceEEE
Confidence 01111110 0 1135899999999998321 112221 1 124899
Q ss_pred eccccccchHHHHHHHHHHh
Q 018394 225 ISCNLKLNLDRLLARMWEEM 244 (356)
Q Consensus 225 iSa~~~~~l~~L~~~i~~~l 244 (356)
+||.+|+|+++|++.+.+.+
T Consensus 167 ~Sa~~g~gi~~Ll~~l~~~~ 186 (188)
T PF00009_consen 167 ISALTGDGIDELLEALVELL 186 (188)
T ss_dssp EBTTTTBTHHHHHHHHHHHS
T ss_pred EecCCCCCHHHHHHHHHHhC
Confidence 99999999999999998876
No 471
>cd04119 RJL RJL (RabJ-Like) subfamily. RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.
Probab=99.43 E-value=4.5e-13 Score=114.80 Aligned_cols=156 Identities=18% Similarity=0.180 Sum_probs=93.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCccccccccccccceEEEECCE--eecccCccccccccccCccccccccccccchh
Q 018394 21 RVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDT--KIQLLDLPGIIEGASEGKGRGRQVIAVSKSSD 98 (356)
Q Consensus 21 ~v~LvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~--~i~~~D~pGl~~~~~~~~~~~~~~~~~~~~~d 98 (356)
.|+++|++|||||||+|.+++...+....|-.+.+...-.+.+++. .+.++||||..... .. ....++.+|
T Consensus 2 ki~~vG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~----~~---~~~~~~~~d 74 (168)
T cd04119 2 KVISMGNSGVGKSCIIKRYCEGRFVSKYLPTIGIDYGVKKVSVRNKEVRVNFFDLSGHPEYL----EV---RNEFYKDTQ 74 (168)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCeEEEEEEEECCccHHHH----HH---HHHHhccCC
Confidence 6899999999999999999988654333333333333345566654 56788999853211 01 112246688
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHHccCccccccCcccccceeccceeeeecCCCCCCCHHHHHHHHHHhcccCcEEEEcc
Q 018394 99 IVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNAEVLFRE 178 (356)
Q Consensus 99 ~i~~v~d~~~~~~~~~~i~~~L~~~~i~l~~~~~~lS~g~~qr~~ial~~DEp~~~LD~~~~~~il~~l~~~~~~i~~th 178 (356)
++++++|.+.+... +.+..++..+ .+.... |
T Consensus 75 ~~ilv~D~~~~~s~-~~~~~~~~~~----------------------------------------~~~~~~--------~ 105 (168)
T cd04119 75 GVLLVYDVTDRQSF-EALDSWLKEM----------------------------------------KQEGGP--------H 105 (168)
T ss_pred EEEEEEECCCHHHH-HhHHHHHHHH----------------------------------------HHhccc--------c
Confidence 88888887664321 1222222111 000000 0
Q ss_pred CCCHHHHHHHHhccccccceEEEeecCCCCCh-----hhHHHHhc--CCCEEEeccccccchHHHHHHHHHHh
Q 018394 179 DATVDDLIDVIEGNRKYMKCVYVYNKIDVIGI-----DDVDKLAR--QPNSVVISCNLKLNLDRLLARMWEEM 244 (356)
Q Consensus 179 d~~~~~~~~~i~~~~~~~p~i~v~NK~Dl~~~-----~~~~~l~~--~~~~i~iSa~~~~~l~~L~~~i~~~l 244 (356)
......|.++|+||+|+... ++...+.. ..+++++||+++.|++++.+.+.+.+
T Consensus 106 ------------~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~l 166 (168)
T cd04119 106 ------------GNMENIVVVVCANKIDLTKHRAVSEDEGRLWAESKGFKYFETSACTGEGVNEMFQTLFSSI 166 (168)
T ss_pred ------------ccCCCceEEEEEEchhcccccccCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 00123699999999998622 22222221 23578999999999999999987654
No 472
>cd01892 Miro2 Miro2 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the putative GTPase domain in the C terminus of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=99.43 E-value=6.1e-13 Score=115.57 Aligned_cols=150 Identities=17% Similarity=0.163 Sum_probs=94.4
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcCCCCcccccccccccc-ceEEEECCEe--ecccCccccccccccCccccccccccccc
Q 018394 20 GRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCI-PGIIHYNDTK--IQLLDLPGIIEGASEGKGRGRQVIAVSKS 96 (356)
Q Consensus 20 ~~v~LvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~-~G~i~~~g~~--i~~~D~pGl~~~~~~~~~~~~~~~~~~~~ 96 (356)
..++|+|.+|||||||++.+++....+.+|..|+.... ...+.++|.. +.+.|++|-.... ......++.
T Consensus 5 ~kv~~vG~~~vGKTsli~~~~~~~f~~~~~~~T~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~-------~~~~~~~~~ 77 (169)
T cd01892 5 FLCFVLGAKGSGKSALLRAFLGRSFSLNAYSPTIKPRYAVNTVEVYGQEKYLILREVGEDEVAI-------LLNDAELAA 77 (169)
T ss_pred EEEEEECCCCCcHHHHHHHHhCCCCCcccCCCccCcceEEEEEEECCeEEEEEEEecCCccccc-------ccchhhhhc
Confidence 57999999999999999999986544356666654432 2456777743 5566877642210 111123477
Q ss_pred hhHHHHHHhcCChHHHHHHHHHHHHHccCccccccCcccccceeccceeeeecCCCCCCCHHHHHHHHHHhcccCcEEEE
Q 018394 97 SDIVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNAEVLF 176 (356)
Q Consensus 97 ~d~i~~v~d~~~~~~~~~~i~~~L~~~~i~l~~~~~~lS~g~~qr~~ial~~DEp~~~LD~~~~~~il~~l~~~~~~i~~ 176 (356)
+|++++++|...+.. .+.+.+++ +.+.
T Consensus 78 ~d~~llv~d~~~~~s-~~~~~~~~--------------------------------------------~~~~-------- 104 (169)
T cd01892 78 CDVACLVYDSSDPKS-FSYCAEVY--------------------------------------------KKYF-------- 104 (169)
T ss_pred CCEEEEEEeCCCHHH-HHHHHHHH--------------------------------------------HHhc--------
Confidence 899988888766422 11111111 1110
Q ss_pred ccCCCHHHHHHHHhccccccceEEEeecCCCCChh-----hHHHHh---cCCCEEEeccccccchHHHHHHHHHHh
Q 018394 177 REDATVDDLIDVIEGNRKYMKCVYVYNKIDVIGID-----DVDKLA---RQPNSVVISCNLKLNLDRLLARMWEEM 244 (356)
Q Consensus 177 thd~~~~~~~~~i~~~~~~~p~i~v~NK~Dl~~~~-----~~~~l~---~~~~~i~iSa~~~~~l~~L~~~i~~~l 244 (356)
.....|+++|+||+|+.... +.+.+. .....+++||+++.|++++.+.+.+.+
T Consensus 105 ---------------~~~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~lf~~l~~~~ 165 (169)
T cd01892 105 ---------------MLGEIPCLFVAAKADLDEQQQRYEVQPDEFCRKLGLPPPLHFSSKLGDSSNELFTKLATAA 165 (169)
T ss_pred ---------------cCCCCeEEEEEEcccccccccccccCHHHHHHHcCCCCCEEEEeccCccHHHHHHHHHHHh
Confidence 01135999999999986322 223332 223468999999999999999988764
No 473
>cd00876 Ras Ras family. The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m
Probab=99.43 E-value=3.2e-13 Score=114.77 Aligned_cols=150 Identities=18% Similarity=0.190 Sum_probs=95.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCccccccccccccceEEEECC--EeecccCccccccccccCccccccccccccchh
Q 018394 21 RVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYND--TKIQLLDLPGIIEGASEGKGRGRQVIAVSKSSD 98 (356)
Q Consensus 21 ~v~LvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g--~~i~~~D~pGl~~~~~~~~~~~~~~~~~~~~~d 98 (356)
.|+|+|++|||||||++++++.. .++.++.||.+.....+.+++ ..+.++|+||...... .....++.+|
T Consensus 1 ki~i~G~~~~GKTsli~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~-------~~~~~~~~~~ 72 (160)
T cd00876 1 KVVVLGAGGVGKSAITIQFVKGT-FVEEYDPTIEDSYRKTIVVDGETYTLDILDTAGQEEFSA-------MRDLYIRQGD 72 (160)
T ss_pred CEEEECCCCCCHHHHHHHHHhCC-CCcCcCCChhHeEEEEEEECCEEEEEEEEECCChHHHHH-------HHHHHHhcCC
Confidence 47899999999999999999876 567788888888888888875 4577899998532110 1112234566
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHHccCccccccCcccccceeccceeeeecCCCCCCCHHHHHHHHHHhcccCcEEEEcc
Q 018394 99 IVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNAEVLFRE 178 (356)
Q Consensus 99 ~i~~v~d~~~~~~~~~~i~~~L~~~~i~l~~~~~~lS~g~~qr~~ial~~DEp~~~LD~~~~~~il~~l~~~~~~i~~th 178 (356)
++++++|...+... +.+.. +...+.
T Consensus 73 ~~i~v~d~~~~~s~-~~~~~--------------------------------------------~~~~~~---------- 97 (160)
T cd00876 73 GFILVYSITDRESF-EEIKG--------------------------------------------YREQIL---------- 97 (160)
T ss_pred EEEEEEECCCHHHH-HHHHH--------------------------------------------HHHHHH----------
Confidence 66666665443211 11111 110000
Q ss_pred CCCHHHHHHHHhccccccceEEEeecCCCCChh-----hHHHHh-c-CCCEEEeccccccchHHHHHHHHHH
Q 018394 179 DATVDDLIDVIEGNRKYMKCVYVYNKIDVIGID-----DVDKLA-R-QPNSVVISCNLKLNLDRLLARMWEE 243 (356)
Q Consensus 179 d~~~~~~~~~i~~~~~~~p~i~v~NK~Dl~~~~-----~~~~l~-~-~~~~i~iSa~~~~~l~~L~~~i~~~ 243 (356)
+ .. ....+|+++|+||+|+.... +...+. . ..+++++||+++.|++++.+.|.+.
T Consensus 98 --------~-~~-~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~l~~~l~~~ 159 (160)
T cd00876 98 --------R-VK-DDEDIPIVLVGNKCDLENERQVSKEEGKALAKEWGCPFIETSAKDNINIDEVFKLLVRE 159 (160)
T ss_pred --------H-hc-CCCCCcEEEEEECCcccccceecHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHHHhh
Confidence 0 00 01246999999999987421 222222 2 2468999999999999999988753
No 474
>cd04114 Rab30 Rab30 subfamily. Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.43 E-value=3e-13 Score=116.57 Aligned_cols=151 Identities=17% Similarity=0.182 Sum_probs=94.5
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcCCCCccccccccccccceEEEECCEe--ecccCccccccccccCccccccccccccch
Q 018394 20 GRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTK--IQLLDLPGIIEGASEGKGRGRQVIAVSKSS 97 (356)
Q Consensus 20 ~~v~LvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~--i~~~D~pGl~~~~~~~~~~~~~~~~~~~~~ 97 (356)
..++++|++|||||||++.+++........|..+.+.....+.++|.. +.++|+||..... ......+..+
T Consensus 8 ~~v~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~-------~~~~~~~~~~ 80 (169)
T cd04114 8 FKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEIKGEKIKLQIWDTAGQERFR-------SITQSYYRSA 80 (169)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCcHHHH-------HHHHHHhcCC
Confidence 589999999999999999999655433334555556666777888855 5667999853211 1112235667
Q ss_pred hHHHHHHhcCChHHHHHHHHHHHHHccCccccccCcccccceeccceeeeecCCCCCCCHHHHHHHHHHhcccCcEEEEc
Q 018394 98 DIVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNAEVLFR 177 (356)
Q Consensus 98 d~i~~v~d~~~~~~~~~~i~~~L~~~~i~l~~~~~~lS~g~~qr~~ial~~DEp~~~LD~~~~~~il~~l~~~~~~i~~t 177 (356)
|.+++++|...... .+.+..++ ..+.
T Consensus 81 d~~i~v~d~~~~~s-~~~~~~~~--------------------------------------------~~l~--------- 106 (169)
T cd04114 81 NALILTYDITCEES-FRCLPEWL--------------------------------------------REIE--------- 106 (169)
T ss_pred CEEEEEEECcCHHH-HHHHHHHH--------------------------------------------HHHH---------
Confidence 77777777654322 11111111 1110
Q ss_pred cCCCHHHHHHHHhccccccceEEEeecCCCCChhh-----HHHHhc--CCCEEEeccccccchHHHHHHHHHH
Q 018394 178 EDATVDDLIDVIEGNRKYMKCVYVYNKIDVIGIDD-----VDKLAR--QPNSVVISCNLKLNLDRLLARMWEE 243 (356)
Q Consensus 178 hd~~~~~~~~~i~~~~~~~p~i~v~NK~Dl~~~~~-----~~~l~~--~~~~i~iSa~~~~~l~~L~~~i~~~ 243 (356)
... ....|.++|+||+|+....+ ...+.. ...++++||++|.|++++.+.+.+.
T Consensus 107 ----------~~~--~~~~~~i~v~NK~D~~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~i~~~ 167 (169)
T cd04114 107 ----------QYA--NNKVITILVGNKIDLAERREVSQQRAEEFSDAQDMYYLETSAKESDNVEKLFLDLACR 167 (169)
T ss_pred ----------HhC--CCCCeEEEEEECcccccccccCHHHHHHHHHHcCCeEEEeeCCCCCCHHHHHHHHHHH
Confidence 000 11258899999999864322 122221 2347899999999999999988764
No 475
>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.
Probab=99.43 E-value=4.4e-13 Score=114.16 Aligned_cols=152 Identities=18% Similarity=0.189 Sum_probs=91.1
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcCCCCccccccccccccceEEEECCEe--ecccCccccccccccCccccccccccccch
Q 018394 20 GRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTK--IQLLDLPGIIEGASEGKGRGRQVIAVSKSS 97 (356)
Q Consensus 20 ~~v~LvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~--i~~~D~pGl~~~~~~~~~~~~~~~~~~~~~ 97 (356)
.+|+++|++|||||||+|.+++.. .+..++.|+.+.....+.+++.. +.++||||..... .+ ....++.+
T Consensus 2 ~ki~iiG~~~vGKTsl~~~~~~~~-~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~----~l---~~~~~~~~ 73 (162)
T cd04138 2 YKLVVVGAGGVGKSALTIQLIQNH-FVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYS----AM---RDQYMRTG 73 (162)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCC-CcCCcCCcchheEEEEEEECCEEEEEEEEECCCCcchH----HH---HHHHHhcC
Confidence 368999999999999999999764 23456666665555666777754 6678999852210 00 11123445
Q ss_pred hHHHHHHhcCChHHHHHHHHHHHHHccCccccccCcccccceeccceeeeecCCCCCCCHHHHHHHHHHhcccCcEEEEc
Q 018394 98 DIVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNAEVLFR 177 (356)
Q Consensus 98 d~i~~v~d~~~~~~~~~~i~~~L~~~~i~l~~~~~~lS~g~~qr~~ial~~DEp~~~LD~~~~~~il~~l~~~~~~i~~t 177 (356)
+.++++++...... .+.+..++.. +++
T Consensus 74 ~~~i~v~~~~~~~s-~~~~~~~~~~----------------------------------------i~~------------ 100 (162)
T cd04138 74 EGFLCVFAINSRKS-FEDIHTYREQ----------------------------------------IKR------------ 100 (162)
T ss_pred CEEEEEEECCCHHH-HHHHHHHHHH----------------------------------------HHH------------
Confidence 65555555543221 1111111100 000
Q ss_pred cCCCHHHHHHHHhccccccceEEEeecCCCCChh----hHHHHhc--CCCEEEeccccccchHHHHHHHHHHh
Q 018394 178 EDATVDDLIDVIEGNRKYMKCVYVYNKIDVIGID----DVDKLAR--QPNSVVISCNLKLNLDRLLARMWEEM 244 (356)
Q Consensus 178 hd~~~~~~~~~i~~~~~~~p~i~v~NK~Dl~~~~----~~~~l~~--~~~~i~iSa~~~~~l~~L~~~i~~~l 244 (356)
. . .....|+++|+||+|+.... +...+.+ ..+++++||++|.|++++.+.+.+.+
T Consensus 101 ----------~-~-~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~ 161 (162)
T cd04138 101 ----------V-K-DSDDVPMVLVGNKCDLAARTVSSRQGQDLAKSYGIPYIETSAKTRQGVEEAFYTLVREI 161 (162)
T ss_pred ----------h-c-CCCCCCEEEEEECcccccceecHHHHHHHHHHhCCeEEEecCCCCCCHHHHHHHHHHHh
Confidence 0 0 01246999999999986422 2222322 23588999999999999998887643
No 476
>cd00154 Rab Rab family. Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di
Probab=99.43 E-value=4.3e-13 Score=113.11 Aligned_cols=148 Identities=21% Similarity=0.215 Sum_probs=92.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCccccccccccccceEEEECC--EeecccCccccccccccCccccccccccccchh
Q 018394 21 RVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYND--TKIQLLDLPGIIEGASEGKGRGRQVIAVSKSSD 98 (356)
Q Consensus 21 ~v~LvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g--~~i~~~D~pGl~~~~~~~~~~~~~~~~~~~~~d 98 (356)
+|+++|++|||||||+|.+++........|.++.+.....+.+++ ..+.++|+||...... .....++++|
T Consensus 2 ~i~~~G~~~~GKStl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~-------~~~~~~~~~d 74 (159)
T cd00154 2 KIVLIGDSGVGKTSLLLRFVDGKFDENYKSTIGVDFKSKTIEIDGKTVKLQIWDTAGQERFRS-------ITPSYYRGAH 74 (159)
T ss_pred eEEEECCCCCCHHHHHHHHHhCcCCCccCCceeeeeEEEEEEECCEEEEEEEEecCChHHHHH-------HHHHHhcCCC
Confidence 689999999999999999998876544445555555555555544 5677889999632111 1122345677
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHHccCccccccCcccccceeccceeeeecCCCCCCCHHHHHHHHHHhcccCcEEEEcc
Q 018394 99 IVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNAEVLFRE 178 (356)
Q Consensus 99 ~i~~v~d~~~~~~~~~~i~~~L~~~~i~l~~~~~~lS~g~~qr~~ial~~DEp~~~LD~~~~~~il~~l~~~~~~i~~th 178 (356)
++++++|...+.. .+.+..++. .+..
T Consensus 75 ~ii~v~d~~~~~~-~~~~~~~~~--------------------------------------------~~~~--------- 100 (159)
T cd00154 75 GAILVYDITNRES-FENLDKWLK--------------------------------------------ELKE--------- 100 (159)
T ss_pred EEEEEEECCCHHH-HHHHHHHHH--------------------------------------------HHHH---------
Confidence 7777777765321 222222211 1110
Q ss_pred CCCHHHHHHHHhccccccceEEEeecCCCCCh-----hhHHHHhc--CCCEEEeccccccchHHHHHHHH
Q 018394 179 DATVDDLIDVIEGNRKYMKCVYVYNKIDVIGI-----DDVDKLAR--QPNSVVISCNLKLNLDRLLARMW 241 (356)
Q Consensus 179 d~~~~~~~~~i~~~~~~~p~i~v~NK~Dl~~~-----~~~~~l~~--~~~~i~iSa~~~~~l~~L~~~i~ 241 (356)
......|.++++||+|+..+ ++...+.. ..+++.+||.++.|++++.+.|.
T Consensus 101 ------------~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~i~ 158 (159)
T cd00154 101 ------------YAPENIPIILVGNKIDLEDQRQVSTEEAQQFAKENGLLFFETSAKTGENVEELFQSLA 158 (159)
T ss_pred ------------hCCCCCcEEEEEEcccccccccccHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHHHh
Confidence 00013699999999999522 23333332 24589999999999999988764
No 477
>cd01890 LepA LepA subfamily. LepA belongs to the GTPase family of and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype.
Probab=99.43 E-value=2.8e-13 Score=118.05 Aligned_cols=147 Identities=19% Similarity=0.274 Sum_probs=88.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCc---------------cccccccccccceEEEE---C--CEeecccCcccccccc
Q 018394 21 RVALIGFPSVGKSTLLTLLTGTHSEA---------------ASYEFTTLTCIPGIIHY---N--DTKIQLLDLPGIIEGA 80 (356)
Q Consensus 21 ~v~LvG~~gaGKSTLln~L~g~~~~v---------------s~~p~TT~~~~~G~i~~---~--g~~i~~~D~pGl~~~~ 80 (356)
.|+++|.+|||||||++++++....+ ....|+|.++..-.+.+ + +..+.++||||.....
T Consensus 2 ni~~vG~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~ 81 (179)
T cd01890 2 NFSIIAHIDHGKSTLADRLLELTGTVSKREMKEQVLDSMDLERERGITIKAQTVRLNYKAKDGQEYLLNLIDTPGHVDFS 81 (179)
T ss_pred cEEEEeecCCCHHHHHHHHHHHhCCCCcCCCceEeccCChhHHHCCCeEecceEEEEEecCCCCcEEEEEEECCCChhhH
Confidence 58999999999999999998743111 11235566555444444 2 4557789999974321
Q ss_pred ccCccccccccccccchhHHHHHHhcCChHHHHHHHHHHHHHccCccccccCcccccceeccceeeeecCCCCCCCHHHH
Q 018394 81 SEGKGRGRQVIAVSKSSDIVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLC 160 (356)
Q Consensus 81 ~~~~~~~~~~~~~~~~~d~i~~v~d~~~~~~~~~~i~~~L~~~~i~l~~~~~~lS~g~~qr~~ial~~DEp~~~LD~~~~ 160 (356)
......++.+|++++|+|......... .
T Consensus 82 -------~~~~~~~~~ad~~i~v~D~~~~~~~~~---------------------------------------------~ 109 (179)
T cd01890 82 -------YEVSRSLAACEGALLLVDATQGVEAQT---------------------------------------------L 109 (179)
T ss_pred -------HHHHHHHHhcCeEEEEEECCCCccHhh---------------------------------------------H
Confidence 111123456777777777654321100 0
Q ss_pred HHHHHHhcccCcEEEEccCCCHHHHHHHHhccccccceEEEeecCCCCChhh---HHHHh---cCC--CEEEeccccccc
Q 018394 161 YQILHEYKIHNAEVLFREDATVDDLIDVIEGNRKYMKCVYVYNKIDVIGIDD---VDKLA---RQP--NSVVISCNLKLN 232 (356)
Q Consensus 161 ~~il~~l~~~~~~i~~thd~~~~~~~~~i~~~~~~~p~i~v~NK~Dl~~~~~---~~~l~---~~~--~~i~iSa~~~~~ 232 (356)
..+. .+. ...+|+++|+||+|+..... .+.+. ..+ .++++||++|.|
T Consensus 110 ~~~~-----------------------~~~--~~~~~iiiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~g 164 (179)
T cd01890 110 ANFY-----------------------LAL--ENNLEIIPVINKIDLPSADPERVKQQIEDVLGLDPSEAILVSAKTGLG 164 (179)
T ss_pred HHHH-----------------------HHH--HcCCCEEEEEECCCCCcCCHHHHHHHHHHHhCCCcccEEEeeccCCCC
Confidence 0000 000 01358999999999863211 12222 222 478999999999
Q ss_pred hHHHHHHHHHHh
Q 018394 233 LDRLLARMWEEM 244 (356)
Q Consensus 233 l~~L~~~i~~~l 244 (356)
+++|.+.+.+.+
T Consensus 165 i~~l~~~l~~~~ 176 (179)
T cd01890 165 VEDLLEAIVERI 176 (179)
T ss_pred HHHHHHHHHhhC
Confidence 999999887654
No 478
>KOG0410 consensus Predicted GTP binding protein [General function prediction only]
Probab=99.42 E-value=2.1e-14 Score=132.90 Aligned_cols=160 Identities=23% Similarity=0.238 Sum_probs=108.7
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHcCCCCccccccccccccceEEEE-CCEeecccCccccccccccCccc-cccccccccc
Q 018394 19 HGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHY-NDTKIQLLDLPGIIEGASEGKGR-GRQVIAVSKS 96 (356)
Q Consensus 19 g~~v~LvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~-~g~~i~~~D~pGl~~~~~~~~~~-~~~~~~~~~~ 96 (356)
...|++||.+|||||||+|+||+......+.-|.|+||+.-...+ .|..+.+.||.|++...+...-- ....+..+..
T Consensus 178 ~pviavVGYTNaGKsTLikaLT~Aal~p~drLFATLDpT~h~a~Lpsg~~vlltDTvGFisdLP~~LvaAF~ATLeeVae 257 (410)
T KOG0410|consen 178 SPVIAVVGYTNAGKSTLIKALTKAALYPNDRLFATLDPTLHSAHLPSGNFVLLTDTVGFISDLPIQLVAAFQATLEEVAE 257 (410)
T ss_pred CceEEEEeecCccHHHHHHHHHhhhcCccchhheeccchhhhccCCCCcEEEEeechhhhhhCcHHHHHHHHHHHHHHhh
Confidence 569999999999999999999977655577889999999776666 56778889999998654322111 1223445567
Q ss_pred hhHHHHHHhcCChHHHH--HHHHHHHHHccCccccccCcccccceeccceeeeecCCCCCCCHHHHHHHHHHhcccCcEE
Q 018394 97 SDIVLMVLDASKSEGHR--QILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNAEV 174 (356)
Q Consensus 97 ~d~i~~v~d~~~~~~~~--~~i~~~L~~~~i~l~~~~~~lS~g~~qr~~ial~~DEp~~~LD~~~~~~il~~l~~~~~~i 174 (356)
+|++++|+|.+.|.... +.+...|..+|+ .
T Consensus 258 adlllHvvDiShP~ae~q~e~Vl~vL~~igv--------------------------------------------~---- 289 (410)
T KOG0410|consen 258 ADLLLHVVDISHPNAEEQRETVLHVLNQIGV--------------------------------------------P---- 289 (410)
T ss_pred cceEEEEeecCCccHHHHHHHHHHHHHhcCC--------------------------------------------C----
Confidence 99999999999875432 223333333322 0
Q ss_pred EEccCCCHHHHHHHHhccccccceEEEeecCCCCChhhHHHHhcCCCEEEeccccccchHHHHHHHHHHhC
Q 018394 175 LFREDATVDDLIDVIEGNRKYMKCVYVYNKIDVIGIDDVDKLARQPNSVVISCNLKLNLDRLLARMWEEMG 245 (356)
Q Consensus 175 ~~thd~~~~~~~~~i~~~~~~~p~i~v~NK~Dl~~~~~~~~l~~~~~~i~iSa~~~~~l~~L~~~i~~~l~ 245 (356)
.... ...++-|.||+|..... .+. .....+++||.+|.|+++++.++...+.
T Consensus 290 -------~~pk---------l~~mieVdnkiD~e~~~-~e~--E~n~~v~isaltgdgl~el~~a~~~kv~ 341 (410)
T KOG0410|consen 290 -------SEPK---------LQNMIEVDNKIDYEEDE-VEE--EKNLDVGISALTGDGLEELLKAEETKVA 341 (410)
T ss_pred -------cHHH---------HhHHHhhcccccccccc-Ccc--ccCCccccccccCccHHHHHHHHHHHhh
Confidence 0001 11456688999975321 110 1122789999999999999999877654
No 479
>KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.42 E-value=2.3e-12 Score=137.98 Aligned_cols=164 Identities=15% Similarity=0.111 Sum_probs=112.8
Q ss_pred CCCCeEEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCccccccccccccceEEEECCEeecccCccccccccccCcccc
Q 018394 8 AGEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRG 87 (356)
Q Consensus 8 ~~~s~~v~~~~g~~v~LvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~~D~pGl~~~~~~~~~~~ 87 (356)
++|+=.+.+ |...||+|.+|||||||||.|+|... .-.++|.|.++|.+... + ...+..|++
T Consensus 808 ~~V~G~~kP--G~LTALMG~SGAGKTTLLdvLA~R~t---------~G~I~Gdi~i~G~p~~q-~------tF~R~~GYv 869 (1391)
T KOG0065|consen 808 NNVSGAFKP--GVLTALMGESGAGKTTLLDVLAGRKT---------GGYIEGDILISGFPKDQ-E------TFARVSGYV 869 (1391)
T ss_pred hcCceEecC--CceeehhcCCCCchHHHHHHHhcCcc---------cceEEeEEEECCeeCch-h------hhcccccee
Confidence 477777888 88999999999999999999999862 22378999999998642 1 122334555
Q ss_pred ccccccccchh---HHHHHHhcC-----ChHHHHHHHHHHHHHccC--cccccc----Ccccccceecccee--------
Q 018394 88 RQVIAVSKSSD---IVLMVLDAS-----KSEGHRQILTKELEAVGL--RLNKRP----PQIYFKKKKTGGIS-------- 145 (356)
Q Consensus 88 ~~~~~~~~~~d---~i~~v~d~~-----~~~~~~~~i~~~L~~~~i--~l~~~~----~~lS~g~~qr~~ia-------- 145 (356)
.|.-.+..... -+.+-...+ ...+..+.+++.++.+++ ..+.-+ ..||.+||+|+.|+
T Consensus 870 qQ~DiH~~~~TVrESL~fSA~LRlp~~v~~~ek~~yVe~Vi~lleL~~~~daiVG~~G~GLs~eQRKrLTIgVELvA~P~ 949 (1391)
T KOG0065|consen 870 EQQDIHSPELTVRESLRFSAALRLPKEVSDEEKYEYVEEVIELLELKEYADALVGLPGSGLSTEQRKRLTIGVELVANPS 949 (1391)
T ss_pred ecccccCcccchHHHHHHHHHHcCCCcCCHHHHHHHHHHHHHHhCchhhhhhhccCCCCCCCHHHhceeeEEEEEecCCc
Confidence 55443333332 233322222 223344778889988888 333333 45999999999998
Q ss_pred --eeecCCCCCCCHHHHHHHHHHh---c-ccCcEEEEccCCCHH--HHHHHH
Q 018394 146 --FNSTLPLTHVDEKLCYQILHEY---K-IHNAEVLFREDATVD--DLIDVI 189 (356)
Q Consensus 146 --l~~DEp~~~LD~~~~~~il~~l---~-~~~~~i~~thd~~~~--~~~~~i 189 (356)
|++||||+|||.....-+++.+ . .+.+++.+-|.++.+ +..|.+
T Consensus 950 ~ilFLDEPTSGLDsqaA~~i~~~lrkla~tGqtIlCTIHQPS~~ife~FD~L 1001 (1391)
T KOG0065|consen 950 SILFLDEPTSGLDSQAAAIVMRFLRKLADTGQTILCTIHQPSIDIFEAFDEL 1001 (1391)
T ss_pred eeEEecCCCCCccHHHHHHHHHHHHHHHhcCCeEEEEecCCcHHHHHHHhHH
Confidence 8899999999998855554444 3 466999988987643 444444
No 480
>cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases. Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu
Probab=99.41 E-value=5.1e-13 Score=113.96 Aligned_cols=79 Identities=18% Similarity=0.267 Sum_probs=54.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCccccccccccccceEEEECCEeecccCccccccccccCccccccccccccchhHH
Q 018394 21 RVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQVIAVSKSSDIV 100 (356)
Q Consensus 21 ~v~LvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~~D~pGl~~~~~~~~~~~~~~~~~~~~~d~i 100 (356)
+|+++|.+|||||||++++++.... . ...|.......+.+.+..+.++|+||..... ......+..+|++
T Consensus 1 ki~iiG~~~~GKssli~~~~~~~~~--~-~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~-------~~~~~~~~~~~~~ 70 (158)
T cd00878 1 RILILGLDGAGKTTILYKLKLGEVV--T-TIPTIGFNVETVEYKNVSFTVWDVGGQDKIR-------PLWKHYYENTNGI 70 (158)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCCC--C-CCCCcCcceEEEEECCEEEEEEECCCChhhH-------HHHHHHhccCCEE
Confidence 4799999999999999999988621 1 2233344445567788899999999954311 1111234567888
Q ss_pred HHHHhcCCh
Q 018394 101 LMVLDASKS 109 (356)
Q Consensus 101 ~~v~d~~~~ 109 (356)
++++|+..+
T Consensus 71 i~v~D~~~~ 79 (158)
T cd00878 71 IFVVDSSDR 79 (158)
T ss_pred EEEEECCCH
Confidence 888887754
No 481
>cd04149 Arf6 Arf6 subfamily. Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed t
Probab=99.41 E-value=4.3e-13 Score=116.48 Aligned_cols=81 Identities=17% Similarity=0.245 Sum_probs=54.4
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHcCCCCccccccccccccceEEEECCEeecccCccccccccccCccccccccccccchh
Q 018394 19 HGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQVIAVSKSSD 98 (356)
Q Consensus 19 g~~v~LvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~~D~pGl~~~~~~~~~~~~~~~~~~~~~d 98 (356)
...|+++|.+|||||||++.|+.... ....|.++. ....+...+..++++||||...... .....++.+|
T Consensus 9 ~~kv~i~G~~~~GKTsli~~l~~~~~-~~~~~t~g~--~~~~~~~~~~~~~l~Dt~G~~~~~~-------~~~~~~~~a~ 78 (168)
T cd04149 9 EMRILMLGLDAAGKTTILYKLKLGQS-VTTIPTVGF--NVETVTYKNVKFNVWDVGGQDKIRP-------LWRHYYTGTQ 78 (168)
T ss_pred ccEEEEECcCCCCHHHHHHHHccCCC-ccccCCccc--ceEEEEECCEEEEEEECCCCHHHHH-------HHHHHhccCC
Confidence 35899999999999999999976432 222232222 2335556778899999999642211 1122457788
Q ss_pred HHHHHHhcCCh
Q 018394 99 IVLMVLDASKS 109 (356)
Q Consensus 99 ~i~~v~d~~~~ 109 (356)
++++|+|+...
T Consensus 79 ~ii~v~D~t~~ 89 (168)
T cd04149 79 GLIFVVDSADR 89 (168)
T ss_pred EEEEEEeCCch
Confidence 89999987764
No 482
>smart00174 RHO Rho (Ras homology) subfamily of Ras-like small GTPases. Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms.
Probab=99.41 E-value=7.6e-13 Score=114.74 Aligned_cols=80 Identities=18% Similarity=0.208 Sum_probs=52.5
Q ss_pred EEEEcCCCCcHHHHHHHHHcCCCCccccccccccccceEEEECCEe--ecccCccccccccccCccccccccccccchhH
Q 018394 22 VALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTK--IQLLDLPGIIEGASEGKGRGRQVIAVSKSSDI 99 (356)
Q Consensus 22 v~LvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~--i~~~D~pGl~~~~~~~~~~~~~~~~~~~~~d~ 99 (356)
|+|+|.+|||||||++.+++...+ ..+..|+.+.....+.+++.. +.++||||...... -....++.+|+
T Consensus 1 i~i~G~~~vGKTsli~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~-------~~~~~~~~~d~ 72 (174)
T smart00174 1 LVVVGDGAVGKTCLLISYTTNAFP-EDYVPTVFENYSADVEVDGKPVELGLWDTAGQEDYDR-------LRPLSYPDTDV 72 (174)
T ss_pred CEEECCCCCCHHHHHHHHHhCCCC-CCCCCcEEeeeeEEEEECCEEEEEEEEECCCCcccch-------hchhhcCCCCE
Confidence 579999999999999999986543 334344444444566777764 67889998532111 01113466788
Q ss_pred HHHHHhcCCh
Q 018394 100 VLMVLDASKS 109 (356)
Q Consensus 100 i~~v~d~~~~ 109 (356)
++++.|....
T Consensus 73 ~ilv~d~~~~ 82 (174)
T smart00174 73 FLICFSVDSP 82 (174)
T ss_pred EEEEEECCCH
Confidence 8888777654
No 483
>cd04139 RalA_RalB RalA/RalB subfamily. The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo
Probab=99.41 E-value=9.9e-13 Score=112.32 Aligned_cols=55 Identities=24% Similarity=0.320 Sum_probs=43.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCccccccccccccceEEEECCE--eecccCcccc
Q 018394 21 RVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDT--KIQLLDLPGI 76 (356)
Q Consensus 21 ~v~LvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~--~i~~~D~pGl 76 (356)
.|+++|++|||||||++.+++... +.++.+||.+.....+.+++. .+.++|+||.
T Consensus 2 ki~~~G~~~~GKTsl~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~ 58 (164)
T cd04139 2 KVIVVGAGGVGKSALTLQFMYDEF-VEDYEPTKADSYRKKVVLDGEDVQLNILDTAGQ 58 (164)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCC-ccccCCcchhhEEEEEEECCEEEEEEEEECCCh
Confidence 689999999999999999997543 456777777766666677764 4677899985
No 484
>smart00173 RAS Ras subfamily of RAS small GTPases. Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades
Probab=99.41 E-value=7e-13 Score=113.73 Aligned_cols=151 Identities=23% Similarity=0.252 Sum_probs=91.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCccccccccccccceEEEECCE--eecccCccccccccccCccccccccccccchh
Q 018394 21 RVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDT--KIQLLDLPGIIEGASEGKGRGRQVIAVSKSSD 98 (356)
Q Consensus 21 ~v~LvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~--~i~~~D~pGl~~~~~~~~~~~~~~~~~~~~~d 98 (356)
+|+++|++|||||||++++.+... ...++.|+.+...-.+.+++. .+.++||||..... .. ....++.+|
T Consensus 2 ki~v~G~~~~GKTsli~~~~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~----~~---~~~~~~~~~ 73 (164)
T smart00173 2 KLVVLGSGGVGKSALTIQFVQGHF-VDDYDPTIEDSYRKQIEIDGEVCLLDILDTAGQEEFS----AM---RDQYMRTGE 73 (164)
T ss_pred EEEEECCCCCCHHHHHHHHHhCcC-CcccCCchhhhEEEEEEECCEEEEEEEEECCCcccch----HH---HHHHHhhCC
Confidence 689999999999999999998653 345666766655555666664 46678999853211 00 011234556
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHHccCccccccCcccccceeccceeeeecCCCCCCCHHHHHHHHHHhcccCcEEEEcc
Q 018394 99 IVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNAEVLFRE 178 (356)
Q Consensus 99 ~i~~v~d~~~~~~~~~~i~~~L~~~~i~l~~~~~~lS~g~~qr~~ial~~DEp~~~LD~~~~~~il~~l~~~~~~i~~th 178 (356)
.+++++|...+.. .+.+..+.+ .+.+
T Consensus 74 ~~i~v~d~~~~~s-~~~~~~~~~----------------------------------------~i~~------------- 99 (164)
T smart00173 74 GFLLVYSITDRQS-FEEIKKFRE----------------------------------------QILR------------- 99 (164)
T ss_pred EEEEEEECCCHHH-HHHHHHHHH----------------------------------------HHHH-------------
Confidence 5566666554321 111111100 0000
Q ss_pred CCCHHHHHHHHhccccccceEEEeecCCCCChh-----hHHHHhc--CCCEEEeccccccchHHHHHHHHHHh
Q 018394 179 DATVDDLIDVIEGNRKYMKCVYVYNKIDVIGID-----DVDKLAR--QPNSVVISCNLKLNLDRLLARMWEEM 244 (356)
Q Consensus 179 d~~~~~~~~~i~~~~~~~p~i~v~NK~Dl~~~~-----~~~~l~~--~~~~i~iSa~~~~~l~~L~~~i~~~l 244 (356)
.. .....|+++|.||+|+.... ....+.+ ..+++++||+++.|++++.+.+.+.+
T Consensus 100 ----------~~-~~~~~pii~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~ 161 (164)
T smart00173 100 ----------VK-DRDDVPIVLVGNKCDLESERVVSTEEGKELARQWGCPFLETSAKERVNVDEAFYDLVREI 161 (164)
T ss_pred ----------hc-CCCCCCEEEEEECccccccceEcHHHHHHHHHHcCCEEEEeecCCCCCHHHHHHHHHHHH
Confidence 00 01136999999999986422 2222222 24589999999999999999887755
No 485
>cd04144 Ras2 Ras2 subfamily. The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=99.40 E-value=7e-13 Score=117.35 Aligned_cols=154 Identities=17% Similarity=0.166 Sum_probs=95.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCccccccccccccceEEEECCEe--ecccCccccccccccCccccccccccccchh
Q 018394 21 RVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTK--IQLLDLPGIIEGASEGKGRGRQVIAVSKSSD 98 (356)
Q Consensus 21 ~v~LvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~--i~~~D~pGl~~~~~~~~~~~~~~~~~~~~~d 98 (356)
.|+++|.+|||||||++.+++-. ...+++.|+.+...-.+.++|.. ++++||||...... -....++.+|
T Consensus 1 ki~ivG~~~vGKTsli~~l~~~~-f~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~-------~~~~~~~~ad 72 (190)
T cd04144 1 KLVVLGDGGVGKTALTIQLCLNH-FVETYDPTIEDSYRKQVVVDGQPCMLEVLDTAGQEEYTA-------LRDQWIREGE 72 (190)
T ss_pred CEEEECCCCCCHHHHHHHHHhCC-CCccCCCchHhhEEEEEEECCEEEEEEEEECCCchhhHH-------HHHHHHHhCC
Confidence 37899999999999999998543 33457777766655566777765 67799999532110 0112346677
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHHccCccccccCcccccceeccceeeeecCCCCCCCHHHHHHHHHHhcccCcEEEEcc
Q 018394 99 IVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNAEVLFRE 178 (356)
Q Consensus 99 ~i~~v~d~~~~~~~~~~i~~~L~~~~i~l~~~~~~lS~g~~qr~~ial~~DEp~~~LD~~~~~~il~~l~~~~~~i~~th 178 (356)
++++++|...... .+.+..+++. +..
T Consensus 73 ~~ilv~d~~~~~s-~~~~~~~~~~--------------------------------------------i~~--------- 98 (190)
T cd04144 73 GFILVYSITSRST-FERVERFREQ--------------------------------------------IQR--------- 98 (190)
T ss_pred EEEEEEECCCHHH-HHHHHHHHHH--------------------------------------------HHH---------
Confidence 7777777655322 1222222211 100
Q ss_pred CCCHHHHHHHHhccccccceEEEeecCCCCCh-----hhHHHHhc--CCCEEEeccccccchHHHHHHHHHHhC
Q 018394 179 DATVDDLIDVIEGNRKYMKCVYVYNKIDVIGI-----DDVDKLAR--QPNSVVISCNLKLNLDRLLARMWEEMG 245 (356)
Q Consensus 179 d~~~~~~~~~i~~~~~~~p~i~v~NK~Dl~~~-----~~~~~l~~--~~~~i~iSa~~~~~l~~L~~~i~~~l~ 245 (356)
.........|+++|.||+|+... .+...+.+ ....+++||++|.|++++.+.+.+.+.
T Consensus 99 ---------~~~~~~~~~piilvgNK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~SAk~~~~v~~l~~~l~~~l~ 163 (190)
T cd04144 99 ---------VKDESAADVPIMIVGNKCDKVYEREVSTEEGAALARRLGCEFIEASAKTNVNVERAFYTLVRALR 163 (190)
T ss_pred ---------HhcccCCCCCEEEEEEChhccccCccCHHHHHHHHHHhCCEEEEecCCCCCCHHHHHHHHHHHHH
Confidence 00000113599999999998532 22222222 134789999999999999998887654
No 486
>cd04150 Arf1_5_like Arf1-Arf5-like subfamily. This subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents
Probab=99.40 E-value=5e-13 Score=114.88 Aligned_cols=79 Identities=16% Similarity=0.238 Sum_probs=53.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCccccccccccccceEEEECCEeecccCccccccccccCccccccccccccchhHH
Q 018394 21 RVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQVIAVSKSSDIV 100 (356)
Q Consensus 21 ~v~LvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~~D~pGl~~~~~~~~~~~~~~~~~~~~~d~i 100 (356)
+|+++|.+|||||||++.+...... +..| |.......+.+....+.++|+||..... ......++.+|++
T Consensus 2 kv~~~G~~~~GKTsli~~l~~~~~~-~~~p--t~g~~~~~~~~~~~~~~l~D~~G~~~~~-------~~~~~~~~~ad~~ 71 (159)
T cd04150 2 RILMVGLDAAGKTTILYKLKLGEIV-TTIP--TIGFNVETVEYKNISFTVWDVGGQDKIR-------PLWRHYFQNTQGL 71 (159)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCc-ccCC--CCCcceEEEEECCEEEEEEECCCCHhHH-------HHHHHHhcCCCEE
Confidence 6899999999999999999643322 2222 3333344566777889999999963211 0112246788999
Q ss_pred HHHHhcCCh
Q 018394 101 LMVLDASKS 109 (356)
Q Consensus 101 ~~v~d~~~~ 109 (356)
++|+|....
T Consensus 72 i~v~D~~~~ 80 (159)
T cd04150 72 IFVVDSNDR 80 (159)
T ss_pred EEEEeCCCH
Confidence 999888764
No 487
>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process
Probab=99.40 E-value=2.5e-13 Score=113.93 Aligned_cols=133 Identities=23% Similarity=0.299 Sum_probs=83.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCccccccccccccceEEEECCEeecccCccccccccccCccccccccccccchhHH
Q 018394 21 RVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQVIAVSKSSDIV 100 (356)
Q Consensus 21 ~v~LvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~~D~pGl~~~~~~~~~~~~~~~~~~~~~d~i 100 (356)
+|.|||++|||||||+++|.|..... . ..=.+.+.+ ..+||||-.- +...+....+....+||++
T Consensus 3 rimliG~~g~GKTTL~q~L~~~~~~~---~------KTq~i~~~~---~~IDTPGEyi---E~~~~y~aLi~ta~dad~V 67 (143)
T PF10662_consen 3 RIMLIGPSGSGKTTLAQALNGEEIRY---K------KTQAIEYYD---NTIDTPGEYI---ENPRFYHALIVTAQDADVV 67 (143)
T ss_pred eEEEECCCCCCHHHHHHHHcCCCCCc---C------ccceeEecc---cEEECChhhe---eCHHHHHHHHHHHhhCCEE
Confidence 78999999999999999999987431 0 111234433 2379998431 1112223334445567777
Q ss_pred HHHHhcCChHHHHHHHHHHHHHccCccccccCcccccceeccceeeeecCCCCCCCHHHHHHHHHHhcccCcEEEEccCC
Q 018394 101 LMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNAEVLFREDA 180 (356)
Q Consensus 101 ~~v~d~~~~~~~~~~i~~~L~~~~i~l~~~~~~lS~g~~qr~~ial~~DEp~~~LD~~~~~~il~~l~~~~~~i~~thd~ 180 (356)
+++.|+..+.. ..|+.++
T Consensus 68 ~ll~dat~~~~-----------------~~pP~fa--------------------------------------------- 85 (143)
T PF10662_consen 68 LLLQDATEPRS-----------------VFPPGFA--------------------------------------------- 85 (143)
T ss_pred EEEecCCCCCc-----------------cCCchhh---------------------------------------------
Confidence 77776654311 1111111
Q ss_pred CHHHHHHHHhccccccceEEEeecCCCC-ChhhHHHHh------cCCCEEEeccccccchHHHHHHHH
Q 018394 181 TVDDLIDVIEGNRKYMKCVYVYNKIDVI-GIDDVDKLA------RQPNSVVISCNLKLNLDRLLARMW 241 (356)
Q Consensus 181 ~~~~~~~~i~~~~~~~p~i~v~NK~Dl~-~~~~~~~l~------~~~~~i~iSa~~~~~l~~L~~~i~ 241 (356)
....+|+|-|++|+|+. +.++++... ...+++++|+.+|+|+++|.+.|.
T Consensus 86 -----------~~f~~pvIGVITK~Dl~~~~~~i~~a~~~L~~aG~~~if~vS~~~~eGi~eL~~~L~ 142 (143)
T PF10662_consen 86 -----------SMFNKPVIGVITKIDLPSDDANIERAKKWLKNAGVKEIFEVSAVTGEGIEELKDYLE 142 (143)
T ss_pred -----------cccCCCEEEEEECccCccchhhHHHHHHHHHHcCCCCeEEEECCCCcCHHHHHHHHh
Confidence 12247999999999998 444443322 234689999999999999998775
No 488
>cd04156 ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h
Probab=99.40 E-value=5e-13 Score=114.18 Aligned_cols=79 Identities=23% Similarity=0.269 Sum_probs=50.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCccccccccccccceEEEEC-CEeecccCccccccccccCccccccccccccchhH
Q 018394 21 RVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYN-DTKIQLLDLPGIIEGASEGKGRGRQVIAVSKSSDI 99 (356)
Q Consensus 21 ~v~LvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~-g~~i~~~D~pGl~~~~~~~~~~~~~~~~~~~~~d~ 99 (356)
.|+|+|++|||||||++.+++.... ...| |.......+.+. +..+.++|+||..... ......+..+|+
T Consensus 1 ~i~i~G~~~~GKTsl~~~~~~~~~~-~~~~--t~~~~~~~~~~~~~~~l~i~D~~G~~~~~-------~~~~~~~~~~~~ 70 (160)
T cd04156 1 QVLLLGLDSAGKSTLLYKLKHAELV-TTIP--TVGFNVEMLQLEKHLSLTVWDVGGQEKMR-------TVWKCYLENTDG 70 (160)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCcc-cccC--ccCcceEEEEeCCceEEEEEECCCCHhHH-------HHHHHHhccCCE
Confidence 4789999999999999999987532 2222 332333445554 3578889999863211 011123566788
Q ss_pred HHHHHhcCCh
Q 018394 100 VLMVLDASKS 109 (356)
Q Consensus 100 i~~v~d~~~~ 109 (356)
+++++|...+
T Consensus 71 iv~v~D~~~~ 80 (160)
T cd04156 71 LVYVVDSSDE 80 (160)
T ss_pred EEEEEECCcH
Confidence 8888887654
No 489
>cd04136 Rap_like Rap-like subfamily. The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres.
Probab=99.40 E-value=1e-12 Score=112.39 Aligned_cols=152 Identities=20% Similarity=0.190 Sum_probs=94.3
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcCCCCccccccccccccceEEEECCEe--ecccCccccccccccCccccccccccccch
Q 018394 20 GRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTK--IQLLDLPGIIEGASEGKGRGRQVIAVSKSS 97 (356)
Q Consensus 20 ~~v~LvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~--i~~~D~pGl~~~~~~~~~~~~~~~~~~~~~ 97 (356)
..|+++|++|||||||++.+.+.. .+..++.|+.+.....+.+++.. +.++||||...... + . ...++.+
T Consensus 2 ~ki~i~G~~~vGKTsl~~~~~~~~-~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~----~-~--~~~~~~~ 73 (163)
T cd04136 2 YKVVVLGSGGVGKSALTVQFVQGI-FVEKYDPTIEDSYRKQIEVDGQQCMLEILDTAGTEQFTA----M-R--DLYIKNG 73 (163)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCC-CCcccCCchhhhEEEEEEECCEEEEEEEEECCCccccch----H-H--HHHhhcC
Confidence 479999999999999999998654 34566777766666677788754 56789999532110 0 0 1124556
Q ss_pred hHHHHHHhcCChHHHHHHHHHHHHHccCccccccCcccccceeccceeeeecCCCCCCCHHHHHHHHHHhcccCcEEEEc
Q 018394 98 DIVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNAEVLFR 177 (356)
Q Consensus 98 d~i~~v~d~~~~~~~~~~i~~~L~~~~i~l~~~~~~lS~g~~qr~~ial~~DEp~~~LD~~~~~~il~~l~~~~~~i~~t 177 (356)
|.+++++|...... .+.+..++ ..+..
T Consensus 74 ~~~ilv~d~~~~~s-~~~~~~~~--------------------------------------------~~i~~-------- 100 (163)
T cd04136 74 QGFVLVYSITSQSS-FNDLQDLR--------------------------------------------EQILR-------- 100 (163)
T ss_pred CEEEEEEECCCHHH-HHHHHHHH--------------------------------------------HHHHH--------
Confidence 76666666654322 11111111 11100
Q ss_pred cCCCHHHHHHHHhccccccceEEEeecCCCCChh-----hHHHHhc--CCCEEEeccccccchHHHHHHHHHHh
Q 018394 178 EDATVDDLIDVIEGNRKYMKCVYVYNKIDVIGID-----DVDKLAR--QPNSVVISCNLKLNLDRLLARMWEEM 244 (356)
Q Consensus 178 hd~~~~~~~~~i~~~~~~~p~i~v~NK~Dl~~~~-----~~~~l~~--~~~~i~iSa~~~~~l~~L~~~i~~~l 244 (356)
.. .....|+++|+||+|+.... +...+.+ ..+++++||+++.|++++.+.+.+.+
T Consensus 101 -----------~~-~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~~ 162 (163)
T cd04136 101 -----------VK-DTENVPMVLVGNKCDLEDERVVSREEGQALARQWGCPFYETSAKSKINVDEVFADLVRQI 162 (163)
T ss_pred -----------hc-CCCCCCEEEEEECccccccceecHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHHHhc
Confidence 00 01136999999999986422 1222222 13578999999999999999887643
No 490
>cd04175 Rap1 Rap1 subgroup. The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the n
Probab=99.39 E-value=9.5e-13 Score=113.10 Aligned_cols=152 Identities=18% Similarity=0.187 Sum_probs=93.7
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcCCCCccccccccccccceEEEECCEe--ecccCccccccccccCccccccccccccch
Q 018394 20 GRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTK--IQLLDLPGIIEGASEGKGRGRQVIAVSKSS 97 (356)
Q Consensus 20 ~~v~LvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~--i~~~D~pGl~~~~~~~~~~~~~~~~~~~~~ 97 (356)
..|+++|.+|||||||++.++.-. .+.+++.|+.+...-.+.+++.. +.++||||...... + ....++.+
T Consensus 2 ~ki~~~G~~~~GKTsli~~~~~~~-~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~----~---~~~~~~~~ 73 (164)
T cd04175 2 YKLVVLGSGGVGKSALTVQFVQGI-FVEKYDPTIEDSYRKQVEVDGQQCMLEILDTAGTEQFTA----M---RDLYMKNG 73 (164)
T ss_pred cEEEEECCCCCCHHHHHHHHHhCC-CCcccCCcchheEEEEEEECCEEEEEEEEECCCcccchh----H---HHHHHhhC
Confidence 378999999999999999988542 34567777776666667777765 45789998532110 0 01123556
Q ss_pred hHHHHHHhcCChHHHHHHHHHHHHHccCccccccCcccccceeccceeeeecCCCCCCCHHHHHHHHHHhcccCcEEEEc
Q 018394 98 DIVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNAEVLFR 177 (356)
Q Consensus 98 d~i~~v~d~~~~~~~~~~i~~~L~~~~i~l~~~~~~lS~g~~qr~~ial~~DEp~~~LD~~~~~~il~~l~~~~~~i~~t 177 (356)
|.+++++|...... .+.+.+++.. +++.
T Consensus 74 d~~ilv~d~~~~~s-~~~~~~~~~~----------------------------------------i~~~----------- 101 (164)
T cd04175 74 QGFVLVYSITAQST-FNDLQDLREQ----------------------------------------ILRV----------- 101 (164)
T ss_pred CEEEEEEECCCHHH-HHHHHHHHHH----------------------------------------HHHh-----------
Confidence 66666666544321 1111111111 0000
Q ss_pred cCCCHHHHHHHHhccccccceEEEeecCCCCCh-----hhHHHHhc--CCCEEEeccccccchHHHHHHHHHHh
Q 018394 178 EDATVDDLIDVIEGNRKYMKCVYVYNKIDVIGI-----DDVDKLAR--QPNSVVISCNLKLNLDRLLARMWEEM 244 (356)
Q Consensus 178 hd~~~~~~~~~i~~~~~~~p~i~v~NK~Dl~~~-----~~~~~l~~--~~~~i~iSa~~~~~l~~L~~~i~~~l 244 (356)
. .....|+++|.||+|+... ++...+.+ ..+++++||++|.|++++.+.+.+.+
T Consensus 102 ------------~-~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~~~l 162 (164)
T cd04175 102 ------------K-DTEDVPMILVGNKCDLEDERVVGKEQGQNLARQWGCAFLETSAKAKINVNEIFYDLVRQI 162 (164)
T ss_pred ------------c-CCCCCCEEEEEECCcchhccEEcHHHHHHHHHHhCCEEEEeeCCCCCCHHHHHHHHHHHh
Confidence 0 0113599999999999632 22233322 13588999999999999999887755
No 491
>cd04152 Arl4_Arl7 Arl4/Arl7 subfamily. Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily.
Probab=99.39 E-value=1e-12 Score=115.68 Aligned_cols=152 Identities=16% Similarity=0.181 Sum_probs=90.8
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcCCCCccccccccccccceEEEE---CCEeecccCccccccccccCccccccccccccc
Q 018394 20 GRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHY---NDTKIQLLDLPGIIEGASEGKGRGRQVIAVSKS 96 (356)
Q Consensus 20 ~~v~LvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~---~g~~i~~~D~pGl~~~~~~~~~~~~~~~~~~~~ 96 (356)
..|+++|.+|||||||++.+++... +..+|.++.+...-.+.+ .+..+.++||||..... ......++.
T Consensus 4 ~kv~~vG~~~~GKTsli~~~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~-------~~~~~~~~~ 75 (183)
T cd04152 4 LHIVMLGLDSAGKTTVLYRLKFNEF-VNTVPTKGFNTEKIKVSLGNSKGITFHFWDVGGQEKLR-------PLWKSYTRC 75 (183)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCc-CCcCCccccceeEEEeeccCCCceEEEEEECCCcHhHH-------HHHHHHhcc
Confidence 4799999999999999999987543 233443222222212222 34678889999853211 011223567
Q ss_pred hhHHHHHHhcCChHHHHHHHHHHHHHccCccccccCcccccceeccceeeeecCCCCCCCHHHHHHHHHHhcccCcEEEE
Q 018394 97 SDIVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNAEVLF 176 (356)
Q Consensus 97 ~d~i~~v~d~~~~~~~~~~i~~~L~~~~i~l~~~~~~lS~g~~qr~~ial~~DEp~~~LD~~~~~~il~~l~~~~~~i~~ 176 (356)
+|++++++|+..... .+.+..++.. ++.
T Consensus 76 ~d~ii~v~D~~~~~~-~~~~~~~~~~----------------------------------------i~~----------- 103 (183)
T cd04152 76 TDGIVFVVDSVDVER-MEEAKTELHK----------------------------------------ITR----------- 103 (183)
T ss_pred CCEEEEEEECCCHHH-HHHHHHHHHH----------------------------------------HHh-----------
Confidence 888888888766422 1111111111 000
Q ss_pred ccCCCHHHHHHHHhccccccceEEEeecCCCCC---hhhHHHHhc---C-----CCEEEeccccccchHHHHHHHHHHh
Q 018394 177 REDATVDDLIDVIEGNRKYMKCVYVYNKIDVIG---IDDVDKLAR---Q-----PNSVVISCNLKLNLDRLLARMWEEM 244 (356)
Q Consensus 177 thd~~~~~~~~~i~~~~~~~p~i~v~NK~Dl~~---~~~~~~l~~---~-----~~~i~iSa~~~~~l~~L~~~i~~~l 244 (356)
.. ....+|+++|+||+|+.. .++++.+.. . .+++++||+++.|+++|.+.+.+.+
T Consensus 104 -----------~~--~~~~~p~iiv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gi~~l~~~l~~~l 169 (183)
T cd04152 104 -----------FS--ENQGVPVLVLANKQDLPNALSVSEVEKLLALHELSASTPWHVQPACAIIGEGLQEGLEKLYEMI 169 (183)
T ss_pred -----------hh--hcCCCcEEEEEECcCccccCCHHHHHHHhCccccCCCCceEEEEeecccCCCHHHHHHHHHHHH
Confidence 00 012369999999999863 233333321 1 1367899999999999999888766
No 492
>cd04118 Rab24 Rab24 subfamily. Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilita
Probab=99.39 E-value=1.3e-12 Score=115.46 Aligned_cols=150 Identities=18% Similarity=0.202 Sum_probs=92.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCcccccccccccc-ceEEEECCEee--cccCccccccccccCccccccccccccch
Q 018394 21 RVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCI-PGIIHYNDTKI--QLLDLPGIIEGASEGKGRGRQVIAVSKSS 97 (356)
Q Consensus 21 ~v~LvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~-~G~i~~~g~~i--~~~D~pGl~~~~~~~~~~~~~~~~~~~~~ 97 (356)
.|+++|++|||||||++.+++......+|..|+.... .-.+.++|..+ .++|++|...... . . ...++.+
T Consensus 2 ki~vvG~~~vGKSsLi~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~----~-~--~~~~~~~ 74 (193)
T cd04118 2 KVVMLGKESVGKTSLVERYVHHRFLVGPYQNTIGAAFVAKRMVVGERVVTLGIWDTAGSERYEA----M-S--RIYYRGA 74 (193)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCcCCcCcccceeeEEEEEEEEECCEEEEEEEEECCCchhhhh----h-h--HhhcCCC
Confidence 6899999999999999999986544445555543322 23566777654 4789998532110 0 1 1134567
Q ss_pred hHHHHHHhcCChHHHHHHHHHHHHHccCccccccCcccccceeccceeeeecCCCCCCCHHHHHHHHHHhcccCcEEEEc
Q 018394 98 DIVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNAEVLFR 177 (356)
Q Consensus 98 d~i~~v~d~~~~~~~~~~i~~~L~~~~i~l~~~~~~lS~g~~qr~~ial~~DEp~~~LD~~~~~~il~~l~~~~~~i~~t 177 (356)
|++++++|...... .+.+..++ ..+.
T Consensus 75 d~iilv~d~~~~~s-~~~~~~~~--------------------------------------------~~i~--------- 100 (193)
T cd04118 75 KAAIVCYDLTDSSS-FERAKFWV--------------------------------------------KELQ--------- 100 (193)
T ss_pred CEEEEEEECCCHHH-HHHHHHHH--------------------------------------------HHHH---------
Confidence 88888877665422 11112121 1111
Q ss_pred cCCCHHHHHHHHhccccccceEEEeecCCCCChh---------hHHHHhc--CCCEEEeccccccchHHHHHHHHHHh
Q 018394 178 EDATVDDLIDVIEGNRKYMKCVYVYNKIDVIGID---------DVDKLAR--QPNSVVISCNLKLNLDRLLARMWEEM 244 (356)
Q Consensus 178 hd~~~~~~~~~i~~~~~~~p~i~v~NK~Dl~~~~---------~~~~l~~--~~~~i~iSa~~~~~l~~L~~~i~~~l 244 (356)
......|+++|.||+|+.... +...+.. ...++++||+++.|+++|.+.+.+.+
T Consensus 101 -------------~~~~~~piilv~nK~Dl~~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~i~~~~ 165 (193)
T cd04118 101 -------------NLEEHCKIYLCGTKSDLIEQDRSLRQVDFHDVQDFADEIKAQHFETSSKTGQNVDELFQKVAEDF 165 (193)
T ss_pred -------------hcCCCCCEEEEEEcccccccccccCccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHHH
Confidence 001135999999999986321 1222221 13478999999999999999998765
No 493
>cd04124 RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b
Probab=99.39 E-value=1.6e-12 Score=111.71 Aligned_cols=149 Identities=19% Similarity=0.178 Sum_probs=87.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCccccccc-cccccceEEEECCE--eecccCccccccccccCccccccccccccch
Q 018394 21 RVALIGFPSVGKSTLLTLLTGTHSEAASYEFT-TLTCIPGIIHYNDT--KIQLLDLPGIIEGASEGKGRGRQVIAVSKSS 97 (356)
Q Consensus 21 ~v~LvG~~gaGKSTLln~L~g~~~~vs~~p~T-T~~~~~G~i~~~g~--~i~~~D~pGl~~~~~~~~~~~~~~~~~~~~~ 97 (356)
.|+++|.+|||||||++.+.+..... .++.| ..+...-.+.+++. .+.++||+|-.... ......++.+
T Consensus 2 ki~vvG~~~vGKTsli~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~-------~~~~~~~~~~ 73 (161)
T cd04124 2 KIILLGDSAVGKSKLVERFLMDGYEP-QQLSTYALTLYKHNAKFEGKTILVDFWDTAGQERFQ-------TMHASYYHKA 73 (161)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCCC-CcCCceeeEEEEEEEEECCEEEEEEEEeCCCchhhh-------hhhHHHhCCC
Confidence 68999999999999999988654321 11111 11112223445554 46788999853211 1111235678
Q ss_pred hHHHHHHhcCChHHHHHHHHHHHHHccCccccccCcccccceeccceeeeecCCCCCCCHHHHHHHHHHhcccCcEEEEc
Q 018394 98 DIVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNAEVLFR 177 (356)
Q Consensus 98 d~i~~v~d~~~~~~~~~~i~~~L~~~~i~l~~~~~~lS~g~~qr~~ial~~DEp~~~LD~~~~~~il~~l~~~~~~i~~t 177 (356)
|++++++|...+... +.+..++ ..+.
T Consensus 74 d~~i~v~d~~~~~s~-~~~~~~~--------------------------------------------~~i~--------- 99 (161)
T cd04124 74 HACILVFDVTRKITY-KNLSKWY--------------------------------------------EELR--------- 99 (161)
T ss_pred CEEEEEEECCCHHHH-HHHHHHH--------------------------------------------HHHH---------
Confidence 888888887654321 1112111 1111
Q ss_pred cCCCHHHHHHHHhccccccceEEEeecCCCCChh--hHHHHhc--CCCEEEeccccccchHHHHHHHHHHh
Q 018394 178 EDATVDDLIDVIEGNRKYMKCVYVYNKIDVIGID--DVDKLAR--QPNSVVISCNLKLNLDRLLARMWEEM 244 (356)
Q Consensus 178 hd~~~~~~~~~i~~~~~~~p~i~v~NK~Dl~~~~--~~~~l~~--~~~~i~iSa~~~~~l~~L~~~i~~~l 244 (356)
......|+++|+||+|+.... +...+.. ..+++++||++|.|++++.+.+.+.+
T Consensus 100 -------------~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~~ 157 (161)
T cd04124 100 -------------EYRPEIPCIVVANKIDLDPSVTQKKFNFAEKHNLPLYYVSAADGTNVVKLFQDAIKLA 157 (161)
T ss_pred -------------HhCCCCcEEEEEECccCchhHHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHHH
Confidence 001135999999999985321 1122221 23578999999999999999887643
No 494
>COG4615 PvdE ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism]
Probab=99.39 E-value=1.2e-12 Score=124.42 Aligned_cols=158 Identities=18% Similarity=0.106 Sum_probs=105.7
Q ss_pred CCCCeEEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCccccccccccccceEEEECCEeecccCccccccccccCcccc
Q 018394 8 AGEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRG 87 (356)
Q Consensus 8 ~~~s~~v~~~~g~~v~LvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~~D~pGl~~~~~~~~~~~ 87 (356)
+.+|+++.+ |+.|-|+|.||||||||+..|||...| .+|.|.+||.++.- +++.-. .
T Consensus 340 gPiNl~ikr--GelvFliG~NGsGKST~~~LLtGL~~P-----------qsG~I~ldg~pV~~-e~ledY---------R 396 (546)
T COG4615 340 GPINLTIKR--GELVFLIGGNGSGKSTLAMLLTGLYQP-----------QSGEILLDGKPVSA-EQLEDY---------R 396 (546)
T ss_pred cceeeEEec--CcEEEEECCCCCcHHHHHHHHhcccCC-----------CCCceeECCccCCC-CCHHHH---------H
Confidence 678999999 889999999999999999999999988 89999999998742 211100 0
Q ss_pred ccccccccchhHHHHHHhcCChHHHHHHHHHHHHHccC-----cccc--ccCcccccceecccee---------eeecCC
Q 018394 88 RQVIAVSKSSDIVLMVLDASKSEGHRQILTKELEAVGL-----RLNK--RPPQIYFKKKKTGGIS---------FNSTLP 151 (356)
Q Consensus 88 ~~~~~~~~~~d~i~~v~d~~~~~~~~~~i~~~L~~~~i-----~l~~--~~~~lS~g~~qr~~ia---------l~~DEp 151 (356)
.-+...+.+..+.--.+.... ....+.++.+|+++.+ ..+. .+.+||.||++|++.- +++||.
T Consensus 397 ~LfSavFsDyhLF~~ll~~e~-~as~q~i~~~LqrLel~~ktsl~d~~fs~~kLStGQkKRlAll~AllEeR~Ilv~DEW 475 (546)
T COG4615 397 KLFSAVFSDYHLFDQLLGPEG-KASPQLIEKWLQRLELAHKTSLNDGRFSNLKLSTGQKKRLALLLALLEERDILVLDEW 475 (546)
T ss_pred HHHHHHhhhHhhhHhhhCCcc-CCChHHHHHHHHHHHHhhhhcccCCcccccccccchHHHHHHHHHHHhhCCeEEeehh
Confidence 112222322222211221111 1234556777777655 1222 3568999999998754 889999
Q ss_pred CCCCCHHHHHH----HHHHhc-ccCcEEEEccCCCHHHHHHHH
Q 018394 152 LTHVDEKLCYQ----ILHEYK-IHNAEVLFREDATVDDLIDVI 189 (356)
Q Consensus 152 ~~~LD~~~~~~----il~~l~-~~~~~i~~thd~~~~~~~~~i 189 (356)
-+.-||.-.+. +|-.++ .++|++.+|||..--+..|.+
T Consensus 476 AADQDPaFRR~FY~~lLp~LK~qGKTI~aIsHDd~YF~~ADrl 518 (546)
T COG4615 476 AADQDPAFRREFYQVLLPLLKEQGKTIFAISHDDHYFIHADRL 518 (546)
T ss_pred hccCChHHHHHHHHHHhHHHHHhCCeEEEEecCchhhhhHHHH
Confidence 99999986443 444555 467999999996544444433
No 495
>cd00157 Rho Rho (Ras homology) family. Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein
Probab=99.39 E-value=9.3e-13 Score=113.53 Aligned_cols=81 Identities=20% Similarity=0.264 Sum_probs=50.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCccccccccccccceEEEECCE--eecccCccccccccccCccccccccccccchh
Q 018394 21 RVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDT--KIQLLDLPGIIEGASEGKGRGRQVIAVSKSSD 98 (356)
Q Consensus 21 ~v~LvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~--~i~~~D~pGl~~~~~~~~~~~~~~~~~~~~~d 98 (356)
+|+++|++|||||||+++|++...... +..|+.+...-.+.+++. .++++|+||..... ......++.+|
T Consensus 2 ki~i~G~~~~GKSsli~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~D~~g~~~~~-------~~~~~~~~~~~ 73 (171)
T cd00157 2 KIVVVGDGAVGKTCLLISYTTGKFPTE-YVPTVFDNYSATVTVDGKQVNLGLWDTAGQEEYD-------RLRPLSYPNTD 73 (171)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCCCC-CCCceeeeeEEEEEECCEEEEEEEEeCCCccccc-------ccchhhcCCCC
Confidence 689999999999999999998764322 222222223333444543 47789999864311 01111236688
Q ss_pred HHHHHHhcCCh
Q 018394 99 IVLMVLDASKS 109 (356)
Q Consensus 99 ~i~~v~d~~~~ 109 (356)
++++++|....
T Consensus 74 ~~i~v~d~~~~ 84 (171)
T cd00157 74 VFLICFSVDSP 84 (171)
T ss_pred EEEEEEECCCH
Confidence 88888887654
No 496
>cd04147 Ras_dva Ras-dva subfamily. Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=99.39 E-value=9.3e-13 Score=117.38 Aligned_cols=154 Identities=20% Similarity=0.192 Sum_probs=98.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCccccccccccccceEEEECC--EeecccCccccccccccCccccccccccccchh
Q 018394 21 RVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYND--TKIQLLDLPGIIEGASEGKGRGRQVIAVSKSSD 98 (356)
Q Consensus 21 ~v~LvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g--~~i~~~D~pGl~~~~~~~~~~~~~~~~~~~~~d 98 (356)
.|+++|.+|||||||++.+++... ...++.|+.+.....+.++| ..+.++|+||...... + . ...+..+|
T Consensus 1 kv~vvG~~~vGKTsll~~~~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~----~-~--~~~~~~ad 72 (198)
T cd04147 1 RLVFMGAAGVGKTALIQRFLYDTF-EPKYRRTVEEMHRKEYEVGGVSLTLDILDTSGSYSFPA----M-R--KLSIQNSD 72 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCC-CccCCCchhhheeEEEEECCEEEEEEEEECCCchhhhH----H-H--HHHhhcCC
Confidence 378999999999999999988653 35566777666666778888 4677899998543211 0 0 11346788
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHHccCccccccCcccccceeccceeeeecCCCCCCCHHHHHHHHHHhcccCcEEEEcc
Q 018394 99 IVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNAEVLFRE 178 (356)
Q Consensus 99 ~i~~v~d~~~~~~~~~~i~~~L~~~~i~l~~~~~~lS~g~~qr~~ial~~DEp~~~LD~~~~~~il~~l~~~~~~i~~th 178 (356)
++++++|...+.. .+.+..++.. +++
T Consensus 73 ~vilv~d~~~~~s-~~~~~~~~~~----------------------------------------i~~------------- 98 (198)
T cd04147 73 AFALVYAVDDPES-FEEVERLREE----------------------------------------ILE------------- 98 (198)
T ss_pred EEEEEEECCCHHH-HHHHHHHHHH----------------------------------------HHH-------------
Confidence 8888888765322 1111111110 000
Q ss_pred CCCHHHHHHHHhccccccceEEEeecCCCCCh-h-----hHHHHh--c-CCCEEEeccccccchHHHHHHHHHHhCce
Q 018394 179 DATVDDLIDVIEGNRKYMKCVYVYNKIDVIGI-D-----DVDKLA--R-QPNSVVISCNLKLNLDRLLARMWEEMGLV 247 (356)
Q Consensus 179 d~~~~~~~~~i~~~~~~~p~i~v~NK~Dl~~~-~-----~~~~l~--~-~~~~i~iSa~~~~~l~~L~~~i~~~l~~i 247 (356)
.. .....|+++|+||+|+... . ...... . ...++++||++|.|++++.+.+.+.+...
T Consensus 99 ---------~~--~~~~~piilv~NK~Dl~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~~~~~ 165 (198)
T cd04147 99 ---------VK--EDKFVPIVVVGNKADSLEEERQVPAKDALSTVELDWNCGFVETSAKDNENVLEVFKELLRQANLP 165 (198)
T ss_pred ---------hc--CCCCCcEEEEEEccccccccccccHHHHHHHHHhhcCCcEEEecCCCCCCHHHHHHHHHHHhhcc
Confidence 00 0124699999999998642 2 111111 1 13578899999999999999998877643
No 497
>cd04146 RERG_RasL11_like RERG/RasL11-like subfamily. RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tu
Probab=99.38 E-value=1.4e-12 Score=112.25 Aligned_cols=153 Identities=16% Similarity=0.241 Sum_probs=95.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCccccccccccccceEEEECCEe--ecccCccccccccccCccccccccccccchh
Q 018394 21 RVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTK--IQLLDLPGIIEGASEGKGRGRQVIAVSKSSD 98 (356)
Q Consensus 21 ~v~LvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~--i~~~D~pGl~~~~~~~~~~~~~~~~~~~~~d 98 (356)
.|+++|++|||||||++.+.... ...+|+.|+.......+.+++.. ++++|+||...... ......++.+|
T Consensus 1 ki~vvG~~~~GKtsli~~~~~~~-~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~------~~~~~~~~~~d 73 (165)
T cd04146 1 KIAVLGASGVGKSALVVRFLTKR-FIGEYDPNLESLYSRQVTIDGEQVSLEILDTAGQQQADT------EQLERSIRWAD 73 (165)
T ss_pred CEEEECCCCCcHHHHHHHHHhCc-cccccCCChHHhceEEEEECCEEEEEEEEECCCCccccc------chHHHHHHhCC
Confidence 37899999999999998887633 34567777766666677788765 67899998642100 01122346678
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHHccCccccccCcccccceeccceeeeecCCCCCCCHHHHHHHHHHhcccCcEEEEcc
Q 018394 99 IVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNAEVLFRE 178 (356)
Q Consensus 99 ~i~~v~d~~~~~~~~~~i~~~L~~~~i~l~~~~~~lS~g~~qr~~ial~~DEp~~~LD~~~~~~il~~l~~~~~~i~~th 178 (356)
++++++|...... .+.+..++.. +..+
T Consensus 74 ~~i~v~d~~~~~s-~~~~~~~~~~-----------------------------------------~~~~----------- 100 (165)
T cd04146 74 GFVLVYSITDRSS-FDEISQLKQL-----------------------------------------IREI----------- 100 (165)
T ss_pred EEEEEEECCCHHH-HHHHHHHHHH-----------------------------------------HHHH-----------
Confidence 8888887765422 2222221111 1000
Q ss_pred CCCHHHHHHHHhccccccceEEEeecCCCCCh-----hhHHHHhc--CCCEEEecccccc-chHHHHHHHHHHh
Q 018394 179 DATVDDLIDVIEGNRKYMKCVYVYNKIDVIGI-----DDVDKLAR--QPNSVVISCNLKL-NLDRLLARMWEEM 244 (356)
Q Consensus 179 d~~~~~~~~~i~~~~~~~p~i~v~NK~Dl~~~-----~~~~~l~~--~~~~i~iSa~~~~-~l~~L~~~i~~~l 244 (356)
.......|+++|.||+|+... ++...+.+ ..+++++||+++. |++++.+.+.+.+
T Consensus 101 -----------~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~~v~~~f~~l~~~~ 163 (165)
T cd04146 101 -----------KKRDREIPVILVGNKADLLHYRQVSTEEGEKLASELGCLFFEVSAAEDYDGVHSVFHELCREV 163 (165)
T ss_pred -----------hcCCCCCCEEEEEECCchHHhCccCHHHHHHHHHHcCCEEEEeCCCCCchhHHHHHHHHHHHH
Confidence 000113699999999998532 22222321 2357899999995 9999998887654
No 498
>cd04107 Rab32_Rab38 Rab38/Rab32 subfamily. Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.38 E-value=2e-12 Score=115.40 Aligned_cols=155 Identities=15% Similarity=0.204 Sum_probs=93.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCccccccccccccceEEEEC-C--EeecccCccccccccccCccccccccccccch
Q 018394 21 RVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYN-D--TKIQLLDLPGIIEGASEGKGRGRQVIAVSKSS 97 (356)
Q Consensus 21 ~v~LvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~-g--~~i~~~D~pGl~~~~~~~~~~~~~~~~~~~~~ 97 (356)
.|+++|++|||||||++.+++........|....+...-.+.++ + ..+.++||||..... . -....++++
T Consensus 2 KivivG~~~vGKTsli~~l~~~~~~~~~~~t~~~d~~~~~v~~~~~~~~~l~l~Dt~G~~~~~----~---~~~~~~~~a 74 (201)
T cd04107 2 KVLVIGDLGVGKTSIIKRYVHGIFSQHYKATIGVDFALKVIEWDPNTVVRLQLWDIAGQERFG----G---MTRVYYRGA 74 (201)
T ss_pred EEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEECCCCEEEEEEEECCCchhhh----h---hHHHHhCCC
Confidence 68999999999999999998764322222322333334455665 4 356789999852210 0 111235778
Q ss_pred hHHHHHHhcCChHHHHHHHHHHHHHccCccccccCcccccceeccceeeeecCCCCCCCHHHHHHHHHHhcccCcEEEEc
Q 018394 98 DIVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNAEVLFR 177 (356)
Q Consensus 98 d~i~~v~d~~~~~~~~~~i~~~L~~~~i~l~~~~~~lS~g~~qr~~ial~~DEp~~~LD~~~~~~il~~l~~~~~~i~~t 177 (356)
+.+++++|...+.. .+.+..+++.+. ..+.
T Consensus 75 ~~~ilv~D~t~~~s-~~~~~~~~~~i~----------------------------------------~~~~--------- 104 (201)
T cd04107 75 VGAIIVFDVTRPST-FEAVLKWKADLD----------------------------------------SKVT--------- 104 (201)
T ss_pred CEEEEEEECCCHHH-HHHHHHHHHHHH----------------------------------------Hhhc---------
Confidence 88888888766432 222222221110 0000
Q ss_pred cCCCHHHHHHHHhccccccceEEEeecCCCCC-----hhhHHHHhc---CCCEEEeccccccchHHHHHHHHHHh
Q 018394 178 EDATVDDLIDVIEGNRKYMKCVYVYNKIDVIG-----IDDVDKLAR---QPNSVVISCNLKLNLDRLLARMWEEM 244 (356)
Q Consensus 178 hd~~~~~~~~~i~~~~~~~p~i~v~NK~Dl~~-----~~~~~~l~~---~~~~i~iSa~~~~~l~~L~~~i~~~l 244 (356)
.......|+++|.||+|+.. .++...+.+ ...++++||++|.|++++.+.+.+.+
T Consensus 105 ------------~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~e~Sak~~~~v~e~f~~l~~~l 167 (201)
T cd04107 105 ------------LPNGEPIPCLLLANKCDLKKRLAKDGEQMDQFCKENGFIGWFETSAKEGINIEEAMRFLVKNI 167 (201)
T ss_pred ------------ccCCCCCcEEEEEECCCcccccccCHHHHHHHHHHcCCceEEEEeCCCCCCHHHHHHHHHHHH
Confidence 00012469999999999862 233444432 23588999999999999999887755
No 499
>TIGR02528 EutP ethanolamine utilization protein, EutP. This protein is found within operons which code for polyhedral organelles containing the enzyme ethanolamine ammonia lyase. The function of this gene is unknown, although the presence of an N-terminal GxxGxGK motif implies a GTP-binding site.
Probab=99.38 E-value=2e-13 Score=114.53 Aligned_cols=45 Identities=18% Similarity=0.179 Sum_probs=32.5
Q ss_pred cceEEEeecCCCCCh----hhHHHHh-c--CCCEEEeccccccchHHHHHHH
Q 018394 196 MKCVYVYNKIDVIGI----DDVDKLA-R--QPNSVVISCNLKLNLDRLLARM 240 (356)
Q Consensus 196 ~p~i~v~NK~Dl~~~----~~~~~l~-~--~~~~i~iSa~~~~~l~~L~~~i 240 (356)
+|.++|+||+|+... +...++. . ..+++++||+++.|+++|.+.+
T Consensus 89 ~p~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l 140 (142)
T TIGR02528 89 KPVIGLVTKIDLAEADVDIERAKELLETAGAEPIFEISSVDEQGLEALVDYL 140 (142)
T ss_pred CCeEEEEEeeccCCcccCHHHHHHHHHHcCCCcEEEEecCCCCCHHHHHHHH
Confidence 399999999998642 1222222 1 2358899999999999998766
No 500
>cd04106 Rab23_lke Rab23-like subfamily. Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G
Probab=99.38 E-value=1.4e-12 Score=111.44 Aligned_cols=148 Identities=18% Similarity=0.230 Sum_probs=88.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCccccccccccccceEEEEC----CEeecccCccccccccccCccccccccccccc
Q 018394 21 RVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYN----DTKIQLLDLPGIIEGASEGKGRGRQVIAVSKS 96 (356)
Q Consensus 21 ~v~LvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~----g~~i~~~D~pGl~~~~~~~~~~~~~~~~~~~~ 96 (356)
.|+++|.+|||||||++.+++....-...|..+.+.....+.+. +..+.++|+||...... .....++.
T Consensus 2 kv~~vG~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~-------~~~~~~~~ 74 (162)
T cd04106 2 KVIVVGNGNVGKSSMIQRFVKGIFTKDYKKTIGVDFLEKQIFLRQSDEDVRLMLWDTAGQEEFDA-------ITKAYYRG 74 (162)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCCCCcEEEEEEEEEEEEcCCCCEEEEEEeeCCchHHHHH-------hHHHHhcC
Confidence 68999999999999999999865332222333344434455555 34678899998432110 01123456
Q ss_pred hhHHHHHHhcCChHHHHHHHHHHHHHccCccccccCcccccceeccceeeeecCCCCCCCHHHHHHHHHHhcccCcEEEE
Q 018394 97 SDIVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNAEVLF 176 (356)
Q Consensus 97 ~d~i~~v~d~~~~~~~~~~i~~~L~~~~i~l~~~~~~lS~g~~qr~~ial~~DEp~~~LD~~~~~~il~~l~~~~~~i~~ 176 (356)
+|.++++.+...+.. .+.+.. ++..+.
T Consensus 75 ~~~~v~v~d~~~~~s-~~~l~~--------------------------------------------~~~~~~-------- 101 (162)
T cd04106 75 AQACILVFSTTDRES-FEAIES--------------------------------------------WKEKVE-------- 101 (162)
T ss_pred CCEEEEEEECCCHHH-HHHHHH--------------------------------------------HHHHHH--------
Confidence 676666666554321 111111 111111
Q ss_pred ccCCCHHHHHHHHhccccccceEEEeecCCCCCh-----hhHHHHhc--CCCEEEeccccccchHHHHHHHHH
Q 018394 177 REDATVDDLIDVIEGNRKYMKCVYVYNKIDVIGI-----DDVDKLAR--QPNSVVISCNLKLNLDRLLARMWE 242 (356)
Q Consensus 177 thd~~~~~~~~~i~~~~~~~p~i~v~NK~Dl~~~-----~~~~~l~~--~~~~i~iSa~~~~~l~~L~~~i~~ 242 (356)
......|.++|+||+|+... ++...+.+ ..+++++||+++.|++++.+.+.+
T Consensus 102 --------------~~~~~~p~iiv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~ 160 (162)
T cd04106 102 --------------AECGDIPMVLVQTKIDLLDQAVITNEEAEALAKRLQLPLFRTSVKDDFNVTELFEYLAE 160 (162)
T ss_pred --------------HhCCCCCEEEEEEChhcccccCCCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHHH
Confidence 00113599999999998643 22233332 235889999999999999888764
Done!