Query 018394
Match_columns 356
No_of_seqs 516 out of 4123
Neff 8.0
Searched_HMMs 29240
Date Mon Mar 25 14:34:37 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018394.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/018394hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4a9a_A Ribosome-interacting GT 100.0 9.8E-59 3.3E-63 448.8 22.6 317 6-324 59-376 (376)
2 1wxq_A GTP-binding protein; st 100.0 2E-40 6.9E-45 324.3 8.9 292 21-325 2-396 (397)
3 1jal_A YCHF protein; nucleotid 100.0 4.6E-40 1.6E-44 316.6 5.1 285 20-322 3-360 (363)
4 2ohf_A Protein OLA1, GTP-bindi 100.0 3.9E-39 1.3E-43 312.9 5.3 290 19-323 22-387 (396)
5 2dby_A GTP-binding protein; GD 100.0 1.1E-38 3.7E-43 308.5 7.8 283 21-322 3-365 (368)
6 1ni3_A YCHF GTPase, YCHF GTP-b 100.0 8.3E-37 2.8E-41 297.1 9.4 287 19-321 20-387 (392)
7 2eki_A DRG 1, developmentally- 99.9 1.9E-28 6.5E-33 186.9 5.9 84 241-327 6-90 (93)
8 3tif_A Uncharacterized ABC tra 99.9 6.9E-26 2.4E-30 206.4 10.9 177 8-207 22-223 (235)
9 3tui_C Methionine import ATP-b 99.9 1.5E-25 5.1E-30 215.4 13.6 186 8-216 45-251 (366)
10 3fvq_A Fe(3+) IONS import ATP- 99.9 5.7E-25 2E-29 211.2 14.0 177 8-208 21-218 (359)
11 3gfo_A Cobalt import ATP-bindi 99.9 6.4E-25 2.2E-29 204.3 13.0 177 8-208 25-223 (275)
12 2pcj_A ABC transporter, lipopr 99.9 4.7E-25 1.6E-29 199.4 11.4 175 8-205 21-215 (224)
13 3rlf_A Maltose/maltodextrin im 99.9 9.6E-25 3.3E-29 211.0 13.8 173 8-208 20-213 (381)
14 1z47_A CYSA, putative ABC-tran 99.9 1.9E-24 6.6E-29 207.5 15.1 173 8-208 32-225 (355)
15 1g6h_A High-affinity branched- 99.9 3.7E-24 1.3E-28 197.5 13.5 173 8-205 24-229 (257)
16 2olj_A Amino acid ABC transpor 99.9 1.9E-24 6.6E-29 199.9 11.3 176 8-207 41-237 (263)
17 1g29_1 MALK, maltose transport 99.9 5.9E-24 2E-28 205.7 14.1 178 8-208 20-219 (372)
18 2it1_A 362AA long hypothetical 99.9 4.4E-24 1.5E-28 205.7 12.9 173 8-208 20-213 (362)
19 3d31_A Sulfate/molybdate ABC t 99.9 2.3E-24 7.9E-29 206.7 10.9 172 8-208 17-207 (348)
20 2yyz_A Sugar ABC transporter, 99.9 4.7E-24 1.6E-28 205.2 12.6 173 8-208 20-213 (359)
21 1v43_A Sugar-binding transport 99.9 7.5E-24 2.6E-28 204.7 13.8 173 8-208 28-221 (372)
22 2onk_A Molybdate/tungstate ABC 99.9 5.3E-24 1.8E-28 194.5 12.0 172 8-208 16-206 (240)
23 4g1u_C Hemin import ATP-bindin 99.9 3.7E-24 1.3E-28 198.4 10.8 174 8-207 28-226 (266)
24 1b0u_A Histidine permease; ABC 99.9 4.9E-24 1.7E-28 197.2 11.2 177 8-207 23-231 (262)
25 1ji0_A ABC transporter; ATP bi 99.9 9.4E-24 3.2E-28 192.9 12.1 174 8-206 23-216 (240)
26 1oxx_K GLCV, glucose, ABC tran 99.9 5.4E-24 1.8E-28 204.7 10.7 175 8-208 22-220 (353)
27 1vpl_A ABC transporter, ATP-bi 99.9 1.4E-23 4.7E-28 193.5 11.7 173 8-207 32-224 (256)
28 1sgw_A Putative ABC transporte 99.9 2E-23 6.7E-28 187.4 9.8 152 8-183 26-196 (214)
29 2ihy_A ABC transporter, ATP-bi 99.9 4.2E-23 1.5E-27 192.5 11.9 172 8-205 38-239 (279)
30 2ff7_A Alpha-hemolysin translo 99.9 3.2E-23 1.1E-27 190.2 9.9 171 8-207 26-221 (247)
31 2qi9_C Vitamin B12 import ATP- 99.9 4.7E-23 1.6E-27 189.2 11.0 172 8-206 17-210 (249)
32 2yz2_A Putative ABC transporte 99.9 1.2E-22 4.1E-27 188.3 12.6 172 8-208 24-217 (266)
33 2d2e_A SUFC protein; ABC-ATPas 99.9 1.3E-22 4.3E-27 186.5 12.3 173 8-205 20-220 (250)
34 1mv5_A LMRA, multidrug resista 99.9 3.4E-23 1.2E-27 189.5 8.3 173 8-208 19-216 (243)
35 2zu0_C Probable ATP-dependent 99.9 1.4E-22 4.8E-27 187.9 12.3 177 8-206 37-242 (267)
36 3nh6_A ATP-binding cassette SU 99.9 3.2E-23 1.1E-27 195.4 7.0 170 8-208 71-267 (306)
37 2nq2_C Hypothetical ABC transp 99.9 2.7E-22 9.2E-27 184.6 12.4 159 8-205 22-205 (253)
38 2ixe_A Antigen peptide transpo 99.9 8.3E-23 2.8E-27 189.8 8.3 173 8-207 36-234 (271)
39 2ghi_A Transport protein; mult 99.9 9.5E-22 3.2E-26 181.6 10.8 168 8-207 37-231 (260)
40 2pjz_A Hypothetical protein ST 99.9 1.9E-21 6.6E-26 179.8 12.7 166 8-206 22-203 (263)
41 3gd7_A Fusion complex of cysti 99.9 2.1E-22 7.1E-27 195.8 6.4 170 8-208 38-232 (390)
42 3b5x_A Lipid A export ATP-bind 99.8 4E-21 1.4E-25 196.6 11.8 171 8-208 360-557 (582)
43 1udx_A The GTP-binding protein 99.8 7.4E-23 2.5E-27 200.6 -1.9 244 8-322 148-406 (416)
44 2pze_A Cystic fibrosis transme 99.8 7E-21 2.4E-25 172.6 11.0 155 8-207 25-207 (229)
45 2cbz_A Multidrug resistance-as 99.8 7.2E-21 2.4E-25 173.4 10.3 157 8-206 22-205 (237)
46 3b60_A Lipid A export ATP-bind 99.8 4.4E-21 1.5E-25 196.3 8.3 171 8-208 360-557 (582)
47 4a82_A Cystic fibrosis transme 99.8 7.7E-21 2.6E-25 194.4 9.0 170 8-208 358-554 (578)
48 3qf4_B Uncharacterized ABC tra 99.8 8.4E-21 2.9E-25 194.8 8.5 170 8-208 372-568 (598)
49 2yl4_A ATP-binding cassette SU 99.8 1.3E-20 4.5E-25 193.3 9.3 171 8-206 361-558 (595)
50 1lnz_A SPO0B-associated GTP-bi 99.8 2.9E-21 9.9E-26 185.0 2.6 162 19-246 158-330 (342)
51 2bbs_A Cystic fibrosis transme 99.8 2.9E-20 9.9E-25 174.2 9.1 154 8-207 55-236 (290)
52 3qf4_A ABC transporter, ATP-bi 99.8 1.3E-20 4.6E-25 192.8 6.9 172 8-208 360-556 (587)
53 3ozx_A RNAse L inhibitor; ATP 99.8 1.1E-19 3.8E-24 183.8 9.3 158 11-204 288-461 (538)
54 2qtf_A Protein HFLX, GTP-bindi 99.8 1.1E-19 3.7E-24 175.6 6.2 162 20-246 180-354 (364)
55 3gee_A MNME, tRNA modification 99.8 7.3E-20 2.5E-24 182.5 4.9 191 19-287 233-430 (476)
56 3bk7_A ABC transporter ATP-bin 99.8 3.3E-19 1.1E-23 182.6 9.2 153 10-203 375-546 (607)
57 1yqt_A RNAse L inhibitor; ATP- 99.8 3.2E-19 1.1E-23 180.7 8.3 153 10-203 305-476 (538)
58 4f4c_A Multidrug resistance pr 99.8 1.3E-19 4.6E-24 200.3 5.9 182 8-218 1096-1304(1321)
59 3geh_A MNME, tRNA modification 99.8 9.7E-20 3.3E-24 181.0 4.1 188 19-287 224-416 (462)
60 1xzp_A Probable tRNA modificat 99.8 1E-19 3.4E-24 181.7 3.8 186 19-286 243-435 (482)
61 1wf3_A GTP-binding protein; GT 99.8 4.6E-19 1.6E-23 167.0 6.6 157 21-245 9-172 (301)
62 3iby_A Ferrous iron transport 99.8 1.2E-19 4.1E-24 167.2 2.4 150 21-243 3-164 (256)
63 1mky_A Probable GTP-binding pr 99.8 4E-19 1.4E-23 175.8 5.5 156 20-245 2-165 (439)
64 3iev_A GTP-binding protein ERA 99.7 1.2E-18 4.2E-23 164.6 8.5 158 20-246 11-182 (308)
65 2gj8_A MNME, tRNA modification 99.7 7.2E-20 2.5E-24 157.8 -0.9 59 19-77 4-63 (172)
66 3i8s_A Ferrous iron transport 99.7 1.7E-19 5.8E-24 167.7 1.4 154 20-245 4-168 (274)
67 3g5u_A MCG1178, multidrug resi 99.7 2.1E-18 7.3E-23 190.3 9.8 173 8-208 1050-1248(1284)
68 1ega_A Protein (GTP-binding pr 99.7 1E-18 3.4E-23 164.7 5.7 155 20-245 9-174 (301)
69 3j16_B RLI1P; ribosome recycli 99.7 4.7E-18 1.6E-22 173.9 10.8 158 8-204 364-543 (608)
70 1mky_A Probable GTP-binding pr 99.7 2.2E-18 7.4E-23 170.6 7.9 60 19-78 180-240 (439)
71 3g5u_A MCG1178, multidrug resi 99.7 2.4E-18 8.1E-23 190.0 9.1 171 8-209 407-604 (1284)
72 1yqt_A RNAse L inhibitor; ATP- 99.7 7.6E-19 2.6E-23 177.9 4.6 156 8-183 39-221 (538)
73 2wji_A Ferrous iron transport 99.7 1.7E-18 5.6E-23 147.9 5.7 59 20-78 4-62 (165)
74 3b1v_A Ferrous iron uptake tra 99.7 8.4E-19 2.9E-23 162.9 3.3 180 20-288 4-191 (272)
75 4f4c_A Multidrug resistance pr 99.7 3.4E-18 1.2E-22 189.2 7.7 178 8-216 435-639 (1321)
76 3bk7_A ABC transporter ATP-bin 99.7 1.2E-18 4.2E-23 178.4 3.6 155 9-183 110-291 (607)
77 3a1s_A Iron(II) transport prot 99.7 2.3E-18 7.7E-23 158.7 4.3 182 20-288 6-195 (258)
78 3ozx_A RNAse L inhibitor; ATP 99.7 4.7E-19 1.6E-23 179.2 -0.5 148 19-183 25-200 (538)
79 3k53_A Ferrous iron transport 99.7 6.1E-18 2.1E-22 156.6 4.7 185 20-289 4-195 (271)
80 2hjg_A GTP-binding protein ENG 99.7 4.7E-18 1.6E-22 168.0 3.8 204 19-295 175-422 (436)
81 2dyk_A GTP-binding protein; GT 99.7 1.2E-17 3.9E-22 140.7 5.5 155 20-244 2-160 (161)
82 3j16_B RLI1P; ribosome recycli 99.7 5.8E-18 2E-22 173.3 3.3 71 114-184 200-285 (608)
83 3ux8_A Excinuclease ABC, A sub 99.7 1.7E-17 6E-22 172.3 5.8 65 118-182 184-266 (670)
84 2e87_A Hypothetical protein PH 99.7 1.2E-16 4.2E-21 153.8 9.3 163 19-245 167-335 (357)
85 4dhe_A Probable GTP-binding pr 99.7 1.1E-17 3.7E-22 149.3 1.6 59 19-77 29-90 (223)
86 3ux8_A Excinuclease ABC, A sub 99.7 1.5E-16 5E-21 165.4 10.2 79 114-202 521-618 (670)
87 2wjg_A FEOB, ferrous iron tran 99.7 2.5E-17 8.4E-22 142.7 3.2 58 20-77 8-65 (188)
88 2hjg_A GTP-binding protein ENG 99.7 2.6E-18 8.9E-23 169.8 -3.6 156 20-245 4-164 (436)
89 4dcu_A GTP-binding protein ENG 99.6 5.5E-17 1.9E-21 161.2 5.4 204 19-295 195-442 (456)
90 2iw3_A Elongation factor 3A; a 99.6 1.2E-16 4.2E-21 169.8 8.3 86 113-207 877-976 (986)
91 2lkc_A Translation initiation 99.6 3.7E-16 1.3E-20 133.8 8.9 151 19-246 8-171 (178)
92 3tw8_B RAS-related protein RAB 99.6 8E-16 2.7E-20 131.7 10.0 151 20-244 10-169 (181)
93 2iw3_A Elongation factor 3A; a 99.6 4.3E-16 1.5E-20 165.7 9.5 144 8-183 452-608 (986)
94 2qu8_A Putative nucleolar GTP- 99.6 3.2E-16 1.1E-20 140.9 5.1 60 19-78 29-88 (228)
95 4dcu_A GTP-binding protein ENG 99.6 2.4E-17 8.3E-22 163.8 -2.5 156 20-245 24-184 (456)
96 3lxw_A GTPase IMAP family memb 99.6 3.9E-16 1.3E-20 142.7 5.4 60 19-78 21-82 (247)
97 3pqc_A Probable GTP-binding pr 99.6 4.1E-16 1.4E-20 135.3 4.9 56 19-77 23-79 (195)
98 1m2o_B GTP-binding protein SAR 99.6 2.6E-15 9E-20 131.1 9.8 157 9-243 16-189 (190)
99 3tkl_A RAS-related protein RAB 99.6 2.3E-15 7.7E-20 131.0 8.7 153 20-245 17-178 (196)
100 1svi_A GTP-binding protein YSX 99.6 3.3E-16 1.1E-20 136.4 3.4 56 19-77 23-80 (195)
101 3qq5_A Small GTP-binding prote 99.6 8.8E-17 3E-21 157.9 -0.8 155 19-245 34-195 (423)
102 3pih_A Uvrabc system protein A 99.6 7.7E-15 2.6E-19 155.7 13.2 80 113-202 782-880 (916)
103 1ksh_A ARF-like protein 2; sma 99.6 4.7E-15 1.6E-19 128.1 8.4 152 19-245 18-179 (186)
104 1f6b_A SAR1; gtpases, N-termin 99.6 5.2E-15 1.8E-19 130.1 8.7 80 20-109 26-105 (198)
105 2h57_A ADP-ribosylation factor 99.6 1.8E-15 6.2E-20 131.5 5.5 156 19-245 21-186 (190)
106 3lvq_E ARF-GAP with SH3 domain 99.6 3.4E-15 1.2E-19 149.6 8.2 152 20-246 323-484 (497)
107 3cph_A RAS-related protein SEC 99.6 9E-15 3.1E-19 129.0 9.4 153 19-244 20-180 (213)
108 2h17_A ADP-ribosylation factor 99.6 3.4E-15 1.2E-19 128.9 6.5 149 19-242 21-179 (181)
109 1z2a_A RAS-related protein RAB 99.6 6.7E-15 2.3E-19 124.4 8.1 151 20-244 6-165 (168)
110 1g16_A RAS-related protein SEC 99.6 5.9E-15 2E-19 124.9 7.7 152 20-244 4-163 (170)
111 3lxx_A GTPase IMAP family memb 99.5 1.7E-15 5.7E-20 137.3 4.4 60 19-78 29-90 (239)
112 2bcg_Y Protein YP2, GTP-bindin 99.5 1.4E-14 4.8E-19 127.5 10.3 152 20-244 9-169 (206)
113 1r8s_A ADP-ribosylation factor 99.5 4.1E-15 1.4E-19 125.5 6.6 150 21-245 2-161 (164)
114 2q3h_A RAS homolog gene family 99.5 6.3E-15 2.2E-19 129.1 7.9 83 19-109 20-104 (201)
115 1upt_A ARL1, ADP-ribosylation 99.5 6.3E-15 2.1E-19 125.0 7.6 151 19-244 7-167 (171)
116 3reg_A RHO-like small GTPase; 99.5 1.4E-14 4.7E-19 126.3 9.6 151 20-244 24-186 (194)
117 1moz_A ARL1, ADP-ribosylation 99.5 3.2E-15 1.1E-19 128.6 5.3 151 19-244 18-178 (183)
118 1wms_A RAB-9, RAB9, RAS-relate 99.5 1.3E-14 4.4E-19 123.9 9.1 155 20-244 8-172 (177)
119 4bas_A ADP-ribosylation factor 99.5 1.1E-14 3.6E-19 127.0 8.6 161 19-245 17-188 (199)
120 2xtp_A GTPase IMAP family memb 99.5 2.7E-15 9.3E-20 137.5 5.0 60 19-78 22-83 (260)
121 4dsu_A GTPase KRAS, isoform 2B 99.5 6.5E-15 2.2E-19 127.0 7.1 153 20-245 5-165 (189)
122 2fu5_C RAS-related protein RAB 99.5 3.4E-15 1.2E-19 128.6 5.2 152 20-244 9-169 (183)
123 1vg8_A RAS-related protein RAB 99.5 1.5E-14 5E-19 127.1 9.1 156 20-244 9-173 (207)
124 3q85_A GTP-binding protein REM 99.5 8.4E-15 2.9E-19 124.2 7.3 154 20-244 3-165 (169)
125 1ky3_A GTP-binding protein YPT 99.5 1.4E-14 4.7E-19 124.0 8.7 157 19-244 8-176 (182)
126 3t5g_A GTP-binding protein RHE 99.5 1.3E-14 4.5E-19 124.6 8.6 153 20-245 7-168 (181)
127 2g6b_A RAS-related protein RAB 99.5 2E-14 6.7E-19 123.2 9.3 153 20-245 11-173 (180)
128 1zj6_A ADP-ribosylation factor 99.5 1.1E-14 3.6E-19 126.3 7.6 153 19-246 16-178 (187)
129 1zd9_A ADP-ribosylation factor 99.5 1E-14 3.6E-19 126.7 7.3 153 19-245 22-184 (188)
130 2atx_A Small GTP binding prote 99.5 2.3E-14 7.8E-19 124.8 9.5 82 20-109 19-102 (194)
131 1mh1_A RAC1; GTP-binding, GTPa 99.5 1.3E-14 4.5E-19 124.8 7.7 152 20-245 6-179 (186)
132 1fzq_A ADP-ribosylation factor 99.5 8.5E-15 2.9E-19 126.7 6.4 150 19-244 16-176 (181)
133 2bme_A RAB4A, RAS-related prot 99.5 9.4E-15 3.2E-19 126.0 6.6 152 20-244 11-171 (186)
134 2hxs_A RAB-26, RAS-related pro 99.5 9.2E-15 3.2E-19 125.0 6.4 155 20-245 7-172 (178)
135 4gzl_A RAS-related C3 botulinu 99.5 8.5E-15 2.9E-19 129.3 6.3 84 19-110 30-115 (204)
136 1u8z_A RAS-related protein RAL 99.5 9.7E-15 3.3E-19 123.0 6.4 152 20-244 5-165 (168)
137 2b6h_A ADP-ribosylation factor 99.5 7.7E-15 2.6E-19 128.3 5.9 151 19-244 29-189 (192)
138 2fn4_A P23, RAS-related protei 99.5 1.2E-14 3.9E-19 124.4 6.9 153 20-245 10-171 (181)
139 2ew1_A RAS-related protein RAB 99.5 1.7E-14 5.8E-19 127.4 8.1 152 20-244 27-187 (201)
140 2y8e_A RAB-protein 6, GH09086P 99.5 1.2E-14 4.3E-19 124.0 7.0 152 20-244 15-175 (179)
141 3cbq_A GTP-binding protein REM 99.5 1E-14 3.4E-19 128.1 6.3 155 19-244 23-186 (195)
142 1z08_A RAS-related protein RAB 99.5 1.5E-14 5.2E-19 122.5 7.1 152 20-244 7-167 (170)
143 3sop_A Neuronal-specific septi 99.5 3.8E-15 1.3E-19 138.0 3.6 148 20-214 3-159 (270)
144 3clv_A RAB5 protein, putative; 99.5 2.3E-14 7.7E-19 124.7 8.3 151 19-244 7-202 (208)
145 1ek0_A Protein (GTP-binding pr 99.5 1.3E-14 4.6E-19 122.5 6.5 152 20-244 4-167 (170)
146 2efe_B Small GTP-binding prote 99.5 3.1E-14 1.1E-18 122.0 8.9 153 20-245 13-174 (181)
147 2x77_A ADP-ribosylation factor 99.5 1E-14 3.4E-19 126.5 5.8 151 19-244 22-182 (189)
148 1wb1_A Translation elongation 99.5 1.7E-14 5.7E-19 144.3 8.0 149 20-245 20-188 (482)
149 2bov_A RAla, RAS-related prote 99.5 1.8E-14 6.2E-19 126.2 7.2 152 20-244 15-175 (206)
150 2a5j_A RAS-related protein RAB 99.5 2.3E-14 7.9E-19 124.7 7.8 152 20-244 22-182 (191)
151 2il1_A RAB12; G-protein, GDP, 99.5 1.2E-14 4.2E-19 126.8 5.9 152 20-244 27-188 (192)
152 2o52_A RAS-related protein RAB 99.5 1.6E-14 5.6E-19 126.9 6.6 152 20-244 26-186 (200)
153 2vf7_A UVRA2, excinuclease ABC 99.5 6.6E-15 2.3E-19 155.0 4.7 79 114-202 708-805 (842)
154 3cpj_B GTP-binding protein YPT 99.5 3.6E-14 1.2E-18 126.9 8.8 153 20-245 14-175 (223)
155 3bc1_A RAS-related protein RAB 99.5 2.4E-14 8.2E-19 123.7 7.3 153 20-244 12-183 (195)
156 2a9k_A RAS-related protein RAL 99.5 2.1E-14 7.3E-19 123.4 7.0 152 20-244 19-179 (187)
157 2nzj_A GTP-binding protein REM 99.5 5.9E-14 2E-18 119.4 9.6 153 20-244 5-167 (175)
158 3bwd_D RAC-like GTP-binding pr 99.5 8.3E-15 2.8E-19 125.7 4.3 152 19-244 8-179 (182)
159 3q72_A GTP-binding protein RAD 99.5 3.4E-14 1.2E-18 120.0 8.0 150 20-244 3-162 (166)
160 1x3s_A RAS-related protein RAB 99.5 2.8E-14 9.6E-19 123.8 7.6 154 19-244 15-176 (195)
161 2j1l_A RHO-related GTP-binding 99.5 2.1E-14 7.2E-19 127.6 6.9 151 20-244 35-207 (214)
162 3con_A GTPase NRAS; structural 99.5 5.2E-14 1.8E-18 122.0 9.2 153 20-245 22-182 (190)
163 1c1y_A RAS-related protein RAP 99.5 2.1E-14 7.3E-19 121.1 6.6 152 20-244 4-165 (167)
164 1z0j_A RAB-22, RAS-related pro 99.5 4.1E-14 1.4E-18 119.7 8.3 150 20-244 7-167 (170)
165 2gf9_A RAS-related protein RAB 99.5 4.8E-14 1.6E-18 122.4 8.7 152 20-244 23-183 (189)
166 3l0i_B RAS-related protein RAB 99.5 1.4E-15 4.8E-20 133.5 -1.1 152 20-244 34-194 (199)
167 1kao_A RAP2A; GTP-binding prot 99.5 2.4E-14 8.2E-19 120.5 6.5 152 20-244 4-164 (167)
168 2www_A Methylmalonic aciduria 99.5 8.8E-16 3E-20 147.4 -2.7 50 196-245 213-278 (349)
169 2fv8_A H6, RHO-related GTP-bin 99.5 2.4E-14 8.4E-19 126.4 6.8 82 20-109 26-109 (207)
170 2gco_A H9, RHO-related GTP-bin 99.5 6.6E-14 2.2E-18 123.0 9.4 82 20-109 26-109 (201)
171 2fg5_A RAB-22B, RAS-related pr 99.5 1.9E-14 6.3E-19 125.5 5.7 151 20-245 24-185 (192)
172 2cxx_A Probable GTP-binding pr 99.5 1.7E-14 5.8E-19 124.6 4.6 53 21-77 3-55 (190)
173 2hup_A RAS-related protein RAB 99.5 3.1E-14 1.1E-18 125.3 6.3 152 20-244 30-191 (201)
174 1zbd_A Rabphilin-3A; G protein 99.5 9.2E-14 3.1E-18 121.8 9.3 152 20-244 9-169 (203)
175 4gp7_A Metallophosphoesterase; 99.5 3.3E-15 1.1E-19 128.8 -0.1 55 130-184 80-163 (171)
176 2f7s_A C25KG, RAS-related prot 99.5 2.2E-14 7.7E-19 127.2 5.2 153 20-244 26-197 (217)
177 4aby_A DNA repair protein RECN 99.5 1.8E-14 6.1E-19 140.9 5.0 61 134-204 296-370 (415)
178 2j0v_A RAC-like GTP-binding pr 99.5 3.8E-14 1.3E-18 125.3 6.3 151 20-244 10-178 (212)
179 1r2q_A RAS-related protein RAB 99.5 4.7E-14 1.6E-18 119.2 6.6 152 20-244 7-167 (170)
180 2ce2_X GTPase HRAS; signaling 99.5 8E-14 2.7E-18 116.9 8.0 152 20-244 4-163 (166)
181 3b85_A Phosphate starvation-in 99.5 7.5E-15 2.6E-19 130.9 1.8 128 19-184 22-162 (208)
182 2iwr_A Centaurin gamma 1; ANK 99.5 6.8E-14 2.3E-18 119.8 7.2 148 20-244 8-167 (178)
183 2oil_A CATX-8, RAS-related pro 99.5 7.6E-14 2.6E-18 121.4 7.3 152 20-244 26-186 (193)
184 1z0f_A RAB14, member RAS oncog 99.5 7.7E-14 2.6E-18 119.0 7.2 151 20-244 16-176 (179)
185 3kkq_A RAS-related protein M-R 99.5 1.1E-13 3.8E-18 119.0 8.3 152 20-244 19-180 (183)
186 3oes_A GTPase rhebl1; small GT 99.5 9.2E-14 3.1E-18 122.0 7.6 154 19-245 24-186 (201)
187 1pui_A ENGB, probable GTP-bind 99.5 9.4E-15 3.2E-19 128.9 1.2 61 12-77 21-83 (210)
188 2r6f_A Excinuclease ABC subuni 99.4 6.6E-14 2.3E-18 148.1 7.6 78 115-202 824-920 (972)
189 3o47_A ADP-ribosylation factor 99.4 5.5E-14 1.9E-18 133.8 6.3 151 20-245 166-326 (329)
190 3t1o_A Gliding protein MGLA; G 99.4 3.1E-14 1.1E-18 123.5 3.7 153 20-244 15-190 (198)
191 3c5c_A RAS-like protein 12; GD 99.4 1.8E-13 6E-18 119.0 8.4 154 19-244 21-184 (187)
192 2qnr_A Septin-2, protein NEDD5 99.4 6.8E-14 2.3E-18 131.6 6.1 167 21-244 20-212 (301)
193 2npi_A Protein CLP1; CLP1-PCF1 99.4 4.5E-16 1.5E-20 154.5 -9.3 144 9-181 130-299 (460)
194 3th5_A RAS-related C3 botulinu 99.2 8.8E-15 3E-19 128.7 0.0 83 19-109 30-114 (204)
195 3ihw_A Centg3; RAS, centaurin, 99.4 1.7E-13 5.8E-18 118.9 8.1 146 20-244 21-178 (184)
196 3dz8_A RAS-related protein RAB 99.4 6.8E-14 2.3E-18 121.7 5.3 153 19-244 23-184 (191)
197 2aka_B Dynamin-1; fusion prote 99.4 1.9E-15 6.6E-20 140.9 -5.1 49 195-243 192-250 (299)
198 1z06_A RAS-related protein RAB 99.4 1.3E-13 4.3E-18 119.6 6.8 154 20-244 21-186 (189)
199 2p5s_A RAS and EF-hand domain 99.4 1E-13 3.5E-18 121.5 6.1 153 19-244 28-195 (199)
200 2f9l_A RAB11B, member RAS onco 99.4 1.8E-13 6E-18 120.1 7.5 58 20-77 6-65 (199)
201 3q3j_B RHO-related GTP-binding 99.4 2E-13 6.8E-18 121.5 7.7 152 19-244 27-201 (214)
202 3r7w_A Gtpase1, GTP-binding pr 99.4 1.4E-13 4.9E-18 129.7 7.0 89 19-109 3-93 (307)
203 1m7b_A RND3/RHOE small GTP-bin 99.4 2E-13 6.8E-18 118.0 7.4 82 20-109 8-91 (184)
204 2yc2_C IFT27, small RAB-relate 99.4 3.6E-14 1.2E-18 124.4 2.7 155 20-244 21-190 (208)
205 2ygr_A Uvrabc system protein A 99.4 1.9E-13 6.3E-18 145.1 8.5 78 115-202 842-938 (993)
206 1oix_A RAS-related protein RAB 99.4 1.6E-13 5.5E-18 119.8 6.7 58 20-77 30-89 (191)
207 3gj0_A GTP-binding nuclear pro 99.4 1.1E-14 3.7E-19 129.9 -0.8 151 20-244 16-173 (221)
208 2fh5_B SR-beta, signal recogni 99.4 1.4E-13 4.7E-18 121.8 6.3 81 19-108 7-90 (214)
209 2g3y_A GTP-binding protein GEM 99.4 5.7E-13 1.9E-17 118.9 10.3 154 20-244 38-201 (211)
210 2erx_A GTP-binding protein DI- 99.4 8.1E-14 2.8E-18 117.9 4.4 154 20-245 4-166 (172)
211 2qm8_A GTPase/ATPase; G protei 99.4 1.1E-14 3.8E-19 139.1 -1.2 34 9-44 47-80 (337)
212 1tq4_A IIGP1, interferon-induc 99.4 1E-14 3.4E-19 142.6 -1.6 141 21-191 71-249 (413)
213 2atv_A RERG, RAS-like estrogen 99.4 1.8E-13 6.2E-18 119.5 6.6 152 19-244 28-189 (196)
214 3izq_1 HBS1P, elongation facto 99.4 5.6E-14 1.9E-18 144.2 3.2 83 19-108 167-280 (611)
215 2zej_A Dardarin, leucine-rich 99.4 8.4E-14 2.9E-18 120.6 3.6 51 195-245 112-177 (184)
216 1gwn_A RHO-related GTP-binding 99.4 2.9E-13 9.8E-18 119.8 7.0 82 20-109 29-112 (205)
217 3j2k_7 ERF3, eukaryotic polype 99.4 1.3E-13 4.6E-18 136.1 5.3 84 19-109 17-131 (439)
218 2wkq_A NPH1-1, RAS-related C3 99.4 2.1E-13 7.3E-18 128.4 6.3 84 19-110 155-240 (332)
219 4djt_A GTP-binding nuclear pro 99.4 1.6E-13 5.6E-18 121.7 5.1 152 20-245 12-174 (218)
220 3t5d_A Septin-7; GTP-binding p 99.4 7.3E-14 2.5E-18 129.4 2.7 58 20-77 9-76 (274)
221 2gf0_A GTP-binding protein DI- 99.4 6E-13 2E-17 115.8 7.7 156 19-246 8-171 (199)
222 3izy_P Translation initiation 99.4 2.7E-14 9.3E-19 143.9 -1.1 151 19-246 4-168 (537)
223 3sjy_A Translation initiation 99.4 2.3E-13 7.9E-18 133.0 5.4 152 19-245 8-191 (403)
224 3mca_A HBS1, elongation factor 99.4 6E-14 2.1E-18 143.5 1.3 82 20-108 178-290 (592)
225 2cjw_A GTP-binding protein GEM 99.4 9.7E-13 3.3E-17 115.0 8.4 57 20-76 7-66 (192)
226 3p26_A Elongation factor 1 alp 99.4 1.4E-13 4.7E-18 137.7 3.3 83 20-109 34-147 (483)
227 2j69_A Bacterial dynamin-like 99.4 6.6E-14 2.3E-18 145.7 0.6 34 19-52 69-103 (695)
228 3tr5_A RF-3, peptide chain rel 99.4 1.3E-13 4.6E-18 139.0 2.6 83 20-109 14-118 (528)
229 1kk1_A EIF2gamma; initiation o 99.3 1.4E-12 4.7E-17 127.7 7.7 151 20-245 11-199 (410)
230 2p67_A LAO/AO transport system 99.3 9.6E-14 3.3E-18 132.8 -1.2 83 196-291 195-293 (341)
231 1e69_A Chromosome segregation 99.3 1.6E-12 5.5E-17 123.2 7.1 60 127-186 213-288 (322)
232 1jwy_B Dynamin A GTPase domain 99.3 2E-13 6.7E-18 128.4 0.4 37 19-55 24-69 (315)
233 3dpu_A RAB family protein; roc 99.3 4.6E-13 1.6E-17 135.5 2.3 150 19-245 41-207 (535)
234 2elf_A Protein translation elo 99.3 6.4E-13 2.2E-17 128.4 2.7 49 21-77 23-71 (370)
235 1s0u_A EIF-2-gamma, translatio 99.3 3.9E-12 1.3E-16 124.5 8.2 152 19-245 8-197 (408)
236 3llu_A RAS-related GTP-binding 99.3 3.2E-12 1.1E-16 111.7 6.6 84 19-109 20-108 (196)
237 2c78_A Elongation factor TU-A; 99.3 1.1E-12 3.7E-17 128.3 3.3 83 19-108 11-110 (405)
238 3qf7_A RAD50; ABC-ATPase, ATPa 99.3 5.1E-12 1.7E-16 121.9 7.7 69 127-205 273-360 (365)
239 2qag_C Septin-7; cell cycle, c 99.3 1.4E-11 4.8E-16 120.6 10.1 78 142-245 139-226 (418)
240 3def_A T7I23.11 protein; chlor 99.2 3.2E-12 1.1E-16 117.5 4.7 59 20-78 37-96 (262)
241 1zo1_I IF2, translation initia 99.2 3.2E-13 1.1E-17 135.0 -2.7 83 19-108 4-86 (501)
242 2x2e_A Dynamin-1; nitration, h 99.2 3.9E-13 1.3E-17 129.1 -2.0 48 195-242 197-254 (353)
243 3p32_A Probable GTPase RV1496/ 99.2 7.6E-13 2.6E-17 127.2 -1.3 50 196-245 218-283 (355)
244 1h65_A Chloroplast outer envel 99.2 6.8E-12 2.3E-16 115.8 5.1 59 20-78 40-99 (270)
245 4dkx_A RAS-related protein RAB 99.2 1.8E-11 6.1E-16 109.5 7.2 152 20-245 14-175 (216)
246 1zun_B Sulfate adenylate trans 99.2 5.8E-12 2E-16 124.2 4.3 82 20-108 25-139 (434)
247 1jny_A EF-1-alpha, elongation 99.2 6.2E-12 2.1E-16 124.1 3.0 83 20-109 7-120 (435)
248 1f60_A Elongation factor EEF1A 99.2 4.3E-12 1.5E-16 126.0 1.9 83 20-109 8-121 (458)
249 2ywe_A GTP-binding protein LEP 99.2 1.2E-11 4.2E-16 126.1 5.3 149 20-245 7-183 (600)
250 1d2e_A Elongation factor TU (E 99.2 1.1E-11 3.9E-16 120.7 4.7 82 20-108 4-101 (397)
251 3zvr_A Dynamin-1; hydrolase, D 99.2 1.9E-12 6.6E-17 134.7 -1.0 49 195-243 217-275 (772)
252 3c5h_A Glucocorticoid receptor 99.2 2.7E-11 9.3E-16 110.9 6.6 50 195-244 198-253 (255)
253 3szr_A Interferon-induced GTP- 99.1 4.3E-11 1.5E-15 122.8 7.5 159 21-210 47-229 (608)
254 3t34_A Dynamin-related protein 99.1 5E-12 1.7E-16 121.5 0.5 25 20-44 35-59 (360)
255 1z6g_A Guanylate kinase; struc 99.1 6.1E-12 2.1E-16 112.6 0.9 34 8-43 14-47 (218)
256 3cb4_D GTP-binding protein LEP 99.1 1.5E-11 5E-16 125.7 3.5 149 20-245 5-181 (599)
257 2xex_A Elongation factor G; GT 99.1 3.8E-11 1.3E-15 124.9 5.6 83 20-109 11-111 (693)
258 2h5e_A Peptide chain release f 99.1 5E-11 1.7E-15 120.2 5.8 84 19-109 13-118 (529)
259 1ye8_A Protein THEP1, hypothet 99.1 4.2E-11 1.4E-15 103.9 4.4 53 127-179 70-139 (178)
260 2pt7_A CAG-ALFA; ATPase, prote 99.1 2.7E-11 9.4E-16 115.2 3.5 111 10-189 164-284 (330)
261 1r5b_A Eukaryotic peptide chai 99.1 1.6E-11 5.4E-16 122.2 1.9 83 20-109 44-157 (467)
262 1g7s_A Translation initiation 99.1 6.4E-11 2.2E-15 120.9 6.2 81 20-108 6-105 (594)
263 1dar_A EF-G, elongation factor 99.1 1.1E-10 3.7E-15 121.5 7.1 84 19-109 12-113 (691)
264 1znw_A Guanylate kinase, GMP k 99.1 1.4E-11 4.7E-16 109.2 -0.3 31 12-44 15-45 (207)
265 2ged_A SR-beta, signal recogni 99.1 2.8E-11 9.5E-16 104.9 1.5 78 19-107 48-129 (193)
266 2dy1_A Elongation factor G; tr 99.0 7E-11 2.4E-15 122.4 4.2 64 12-77 4-85 (665)
267 2qpt_A EH domain-containing pr 99.0 2.8E-11 9.6E-16 122.7 0.6 36 19-54 65-103 (550)
268 3aez_A Pantothenate kinase; tr 99.0 9.3E-11 3.2E-15 110.7 2.9 109 19-157 90-209 (312)
269 2wsm_A Hydrogenase expression/ 99.0 7E-11 2.4E-15 104.9 1.5 50 196-245 155-213 (221)
270 2eyu_A Twitching motility prot 99.0 5.5E-10 1.9E-14 102.7 7.5 120 14-189 22-142 (261)
271 3b9q_A Chloroplast SRP recepto 99.0 4.8E-12 1.6E-16 119.0 -6.6 47 9-68 92-138 (302)
272 2qag_A Septin-2, protein NEDD5 99.0 4.7E-11 1.6E-15 115.0 -0.3 58 20-77 38-106 (361)
273 3avx_A Elongation factor TS, e 99.0 2.2E-10 7.5E-15 123.1 4.5 82 20-108 297-394 (1289)
274 3qkt_A DNA double-strand break 98.9 4.2E-09 1.4E-13 100.3 12.1 55 128-182 243-316 (339)
275 1puj_A YLQF, conserved hypothe 98.9 4.2E-10 1.5E-14 104.6 4.6 58 19-79 120-178 (282)
276 2dpy_A FLII, flagellum-specifi 98.9 9.2E-11 3.1E-15 115.6 -1.5 149 9-189 150-325 (438)
277 2rdo_7 EF-G, elongation factor 98.9 1.4E-09 4.7E-14 113.3 7.2 84 19-109 10-118 (704)
278 2og2_A Putative signal recogni 98.9 2.1E-11 7.1E-16 117.1 -6.7 47 9-68 149-195 (359)
279 2obl_A ESCN; ATPase, hydrolase 98.9 6.3E-10 2.2E-14 106.4 3.2 158 9-190 64-237 (347)
280 3thx_B DNA mismatch repair pro 98.9 1.6E-09 5.5E-14 115.2 5.9 45 146-190 756-806 (918)
281 1tf7_A KAIC; homohexamer, hexa 98.8 3.1E-11 1.1E-15 121.8 -7.6 145 8-182 29-187 (525)
282 1nrj_B SR-beta, signal recogni 98.8 7.5E-10 2.6E-14 97.8 2.1 52 19-77 12-66 (218)
283 1yrb_A ATP(GTP)binding protein 98.8 3.5E-10 1.2E-14 103.1 -0.6 51 195-245 171-256 (262)
284 2jeo_A Uridine-cytidine kinase 98.8 2.7E-09 9.2E-14 96.8 4.6 34 8-43 16-49 (245)
285 2qag_B Septin-6, protein NEDD5 98.8 1.2E-08 4E-13 99.8 9.1 65 9-76 32-105 (427)
286 3thx_A DNA mismatch repair pro 98.8 3E-09 1E-13 113.4 4.8 44 146-189 745-794 (934)
287 3ec1_A YQEH GTPase; atnos1, at 98.8 2.1E-10 7.3E-15 110.7 -3.7 58 19-79 162-225 (369)
288 1f5n_A Interferon-induced guan 98.8 4.4E-09 1.5E-13 106.9 5.2 58 20-78 39-103 (592)
289 3vqt_A RF-3, peptide chain rel 98.8 6.6E-09 2.3E-13 105.2 6.2 100 19-125 31-153 (548)
290 1cr0_A DNA primase/helicase; R 98.7 6.9E-10 2.4E-14 103.4 -1.9 35 9-45 27-61 (296)
291 2ehv_A Hypothetical protein PH 98.7 4.8E-09 1.6E-13 94.5 3.2 27 13-41 26-52 (251)
292 2rcn_A Probable GTPase ENGC; Y 98.7 3E-09 1E-13 101.8 1.2 100 19-145 215-325 (358)
293 3hvz_A Uncharacterized protein 98.7 5.5E-08 1.9E-12 72.3 7.1 55 261-325 15-69 (78)
294 1n0u_A EF-2, elongation factor 98.6 3.8E-09 1.3E-13 112.1 0.8 83 20-109 20-134 (842)
295 2v9p_A Replication protein E1; 98.6 1.5E-09 5E-14 101.9 -2.9 33 9-43 118-150 (305)
296 3h2y_A GTPase family protein; 98.6 4.9E-09 1.7E-13 101.0 0.7 57 19-78 160-223 (368)
297 3j25_A Tetracycline resistance 98.6 5.1E-09 1.7E-13 108.0 0.4 99 20-125 3-120 (638)
298 3cnl_A YLQF, putative uncharac 98.6 1.8E-08 6.2E-13 92.6 4.0 56 20-78 100-156 (262)
299 3jvv_A Twitching mobility prot 98.6 5.6E-08 1.9E-12 93.2 7.1 42 146-190 200-241 (356)
300 3ney_A 55 kDa erythrocyte memb 98.6 9E-09 3.1E-13 90.5 1.3 65 10-78 12-78 (197)
301 1tf7_A KAIC; homohexamer, hexa 98.6 1.3E-08 4.4E-13 102.6 2.5 120 12-180 276-417 (525)
302 2yv5_A YJEQ protein; hydrolase 98.6 1.4E-08 4.8E-13 95.2 2.6 122 19-145 165-299 (302)
303 2ewv_A Twitching motility prot 98.6 9.8E-08 3.4E-12 92.0 8.5 118 19-190 136-254 (372)
304 1htw_A HI0065; nucleotide-bind 98.6 4E-09 1.4E-13 89.6 -1.1 46 9-68 25-70 (158)
305 1wb9_A DNA mismatch repair pro 98.5 2.1E-08 7.3E-13 105.5 3.0 44 146-189 690-739 (800)
306 4a74_A DNA repair and recombin 98.5 2.2E-08 7.4E-13 89.0 1.8 29 14-44 22-50 (231)
307 1nlf_A Regulatory protein REPA 98.5 1E-07 3.5E-12 87.9 6.3 66 116-181 99-182 (279)
308 3asz_A Uridine kinase; cytidin 98.5 2.8E-08 9.5E-13 87.5 1.9 25 19-43 6-30 (211)
309 2i3b_A HCR-ntpase, human cance 98.5 2.7E-08 9.3E-13 86.9 1.7 25 19-43 1-25 (189)
310 3lnc_A Guanylate kinase, GMP k 98.5 2.6E-08 9E-13 89.2 1.6 52 7-60 17-70 (231)
311 1ewq_A DNA mismatch repair pro 98.5 1.1E-08 3.6E-13 107.3 -1.3 25 19-43 576-600 (765)
312 1nij_A Hypothetical protein YJ 98.4 1E-08 3.5E-13 96.8 -3.0 48 20-70 5-52 (318)
313 2vf7_A UVRA2, excinuclease ABC 98.4 2E-08 6.9E-13 105.9 -1.3 144 29-183 272-444 (842)
314 2hf9_A Probable hydrogenase ni 98.4 7.2E-07 2.5E-11 78.9 8.7 49 196-244 165-222 (226)
315 1f2t_B RAD50 ABC-ATPase; DNA d 98.4 1.4E-07 4.6E-12 79.2 3.5 69 127-205 51-138 (148)
316 3r7w_B Gtpase2, GTP-binding pr 98.4 8.2E-08 2.8E-12 90.7 2.2 84 21-109 1-85 (331)
317 2f1r_A Molybdopterin-guanine d 98.4 2.4E-08 8.3E-13 85.8 -1.4 46 20-73 3-48 (171)
318 2o8b_B DNA mismatch repair pro 98.4 4.7E-08 1.6E-12 105.4 0.1 39 146-184 872-916 (1022)
319 1kgd_A CASK, peripheral plasma 98.3 1.8E-07 6E-12 80.6 2.2 52 19-72 5-58 (180)
320 3a00_A Guanylate kinase, GMP k 98.3 1.3E-07 4.4E-12 81.9 1.3 49 20-70 2-52 (186)
321 2j37_W Signal recognition part 98.3 3.6E-08 1.2E-12 98.6 -2.8 22 19-40 101-122 (504)
322 1lvg_A Guanylate kinase, GMP k 98.3 1.2E-07 4.2E-12 83.1 0.6 52 19-72 4-57 (198)
323 1t9h_A YLOQ, probable GTPase E 98.2 2.1E-07 7.3E-12 87.3 0.8 61 12-78 168-236 (307)
324 1s96_A Guanylate kinase, GMP k 98.2 4.8E-07 1.7E-11 80.8 3.1 29 14-44 13-41 (219)
325 3euj_A Chromosome partition pr 98.2 1.3E-07 4.3E-12 94.0 -0.9 47 8-68 21-67 (483)
326 2w0m_A SSO2452; RECA, SSPF, un 98.2 2.7E-07 9.1E-12 81.7 1.2 30 13-44 19-48 (235)
327 1pzn_A RAD51, DNA repair and r 98.2 1.5E-06 5.1E-11 83.0 6.1 31 11-43 125-155 (349)
328 3pih_A Uvrabc system protein A 98.2 4.6E-07 1.6E-11 96.3 2.6 66 117-182 445-528 (916)
329 3ec2_A DNA replication protein 98.2 6E-07 2E-11 77.0 2.8 31 12-44 33-63 (180)
330 2r6f_A Excinuclease ABC subuni 98.2 4.1E-07 1.4E-11 96.6 1.4 66 118-183 486-569 (972)
331 2ygr_A Uvrabc system protein A 98.1 6.3E-07 2.1E-11 95.4 2.6 64 119-182 504-585 (993)
332 1u0l_A Probable GTPase ENGC; p 98.1 1E-06 3.5E-11 82.4 3.8 27 19-45 169-195 (301)
333 2gza_A Type IV secretion syste 98.1 3.5E-07 1.2E-11 87.8 0.4 46 8-66 166-211 (361)
334 3tr0_A Guanylate kinase, GMP k 98.1 1.1E-06 3.8E-11 76.5 3.2 31 11-43 1-31 (205)
335 1zp6_A Hypothetical protein AT 98.1 1.7E-06 5.9E-11 74.5 4.3 37 19-68 9-45 (191)
336 1p9r_A General secretion pathw 98.1 7.1E-07 2.4E-11 87.3 2.0 40 19-69 167-206 (418)
337 3q5d_A Atlastin-1; G protein, 98.1 1.6E-06 5.4E-11 85.3 4.4 59 20-78 68-152 (447)
338 2v3c_C SRP54, signal recogniti 98.1 1.9E-08 6.4E-13 98.9 -9.5 31 12-42 92-122 (432)
339 2yhs_A FTSY, cell division pro 98.0 6.6E-07 2.2E-11 88.8 0.4 47 8-67 284-330 (503)
340 3tau_A Guanylate kinase, GMP k 98.0 1.9E-06 6.6E-11 75.9 3.0 54 19-74 8-63 (208)
341 4fn5_A EF-G 1, elongation fact 98.0 2.2E-06 7.4E-11 89.4 3.5 99 20-125 14-138 (709)
342 1ls1_A Signal recognition part 98.0 1.4E-05 4.9E-10 74.4 7.6 44 8-66 91-134 (295)
343 1rj9_A FTSY, signal recognitio 97.9 2.3E-06 7.9E-11 80.1 2.1 41 18-69 101-141 (304)
344 3c8u_A Fructokinase; YP_612366 97.9 2E-06 6.7E-11 75.7 1.2 42 19-68 22-63 (208)
345 3e70_C DPA, signal recognition 97.8 4.1E-06 1.4E-10 79.3 1.3 41 18-69 128-168 (328)
346 3kta_B Chromosome segregation 97.8 4.7E-06 1.6E-10 71.6 1.5 52 129-180 60-127 (173)
347 1in4_A RUVB, holliday junction 97.8 2.7E-06 9.2E-11 80.6 -0.2 133 20-168 52-193 (334)
348 2j41_A Guanylate kinase; GMP, 97.8 1.1E-05 3.8E-10 70.1 3.7 30 13-44 2-31 (207)
349 2oap_1 GSPE-2, type II secreti 97.8 3.8E-06 1.3E-10 84.1 0.5 45 10-67 253-297 (511)
350 1sq5_A Pantothenate kinase; P- 97.8 8.3E-06 2.8E-10 76.4 2.6 34 19-63 80-115 (308)
351 1sxj_E Activator 1 40 kDa subu 97.8 3.4E-05 1.2E-09 72.9 6.9 37 21-68 38-75 (354)
352 1qhl_A Protein (cell division 97.7 8.9E-07 3.1E-11 79.5 -4.8 38 20-68 28-65 (227)
353 2bdt_A BH3686; alpha-beta prot 97.7 1.3E-05 4.4E-10 69.0 2.4 23 19-41 2-24 (189)
354 3vaa_A Shikimate kinase, SK; s 97.7 1.9E-05 6.6E-10 68.7 3.3 34 8-43 16-49 (199)
355 1ex7_A Guanylate kinase; subst 97.7 1E-05 3.5E-10 70.3 1.5 54 21-76 3-58 (186)
356 4ad8_A DNA repair protein RECN 97.7 1.7E-05 6E-10 79.5 3.2 66 130-205 393-473 (517)
357 3kta_A Chromosome segregation 97.6 2.5E-05 8.5E-10 66.7 2.8 34 8-44 18-51 (182)
358 2qor_A Guanylate kinase; phosp 97.6 1.5E-05 5E-10 69.7 1.4 53 19-73 12-66 (204)
359 3dm5_A SRP54, signal recogniti 97.6 9E-06 3.1E-10 79.8 -0.6 23 19-41 100-122 (443)
360 2bbw_A Adenylate kinase 4, AK4 97.5 4.3E-05 1.5E-09 68.7 3.4 27 19-45 27-56 (246)
361 4eun_A Thermoresistant glucoki 97.5 4.5E-05 1.5E-09 66.4 3.3 24 19-42 29-52 (200)
362 2x8a_A Nuclear valosin-contain 97.5 2E-05 6.8E-10 72.6 1.0 31 9-43 38-68 (274)
363 4e22_A Cytidylate kinase; P-lo 97.5 1.4E-05 4.9E-10 72.5 -0.4 27 19-45 27-56 (252)
364 1lw7_A Transcriptional regulat 97.5 4.1E-05 1.4E-09 73.2 2.7 37 9-45 160-196 (365)
365 1kag_A SKI, shikimate kinase I 97.4 6.2E-05 2.1E-09 63.4 2.9 25 19-43 4-28 (173)
366 3uie_A Adenylyl-sulfate kinase 97.4 8.6E-05 2.9E-09 64.6 3.2 25 19-43 25-49 (200)
367 1knq_A Gluconate kinase; ALFA/ 97.3 0.0001 3.5E-09 62.3 3.2 24 19-42 8-31 (175)
368 3auy_A DNA double-strand break 97.2 0.00013 4.5E-09 69.9 3.4 67 129-205 276-361 (371)
369 2ius_A DNA translocase FTSK; n 97.2 5.6E-05 1.9E-09 75.5 0.7 32 8-41 158-189 (512)
370 2vp4_A Deoxynucleoside kinase; 97.2 0.00013 4.3E-09 65.1 2.3 24 19-42 20-43 (230)
371 2kjq_A DNAA-related protein; s 97.1 0.00014 4.7E-09 60.6 2.0 26 19-44 36-61 (149)
372 1y63_A LMAJ004144AAA protein; 97.1 0.00018 6.2E-09 61.7 2.6 32 9-42 2-33 (184)
373 1ixz_A ATP-dependent metallopr 97.1 0.00011 3.9E-09 66.1 1.2 31 9-43 43-73 (254)
374 1cke_A CK, MSSA, protein (cyti 97.1 0.00024 8.4E-09 62.5 3.3 25 19-43 5-29 (227)
375 1rz3_A Hypothetical protein rb 97.1 0.00025 8.7E-09 61.7 3.2 25 19-43 22-46 (201)
376 2o5v_A DNA replication and rep 97.1 0.00019 6.6E-09 68.6 2.5 31 8-41 18-48 (359)
377 1svm_A Large T antigen; AAA+ f 97.1 9.1E-05 3.1E-09 71.3 0.2 31 10-42 162-192 (377)
378 1n0w_A DNA repair protein RAD5 97.1 0.00031 1E-08 62.3 3.6 27 14-42 21-47 (243)
379 1jjv_A Dephospho-COA kinase; P 97.0 0.00034 1.2E-08 60.8 3.4 22 21-42 4-25 (206)
380 1iy2_A ATP-dependent metallopr 97.0 0.00015 5.3E-09 66.3 1.3 31 9-43 67-97 (278)
381 2qt1_A Nicotinamide riboside k 97.0 0.00036 1.2E-08 60.7 3.5 25 19-43 21-45 (207)
382 2if2_A Dephospho-COA kinase; a 96.9 0.00038 1.3E-08 60.3 3.0 22 21-42 3-24 (204)
383 4eaq_A DTMP kinase, thymidylat 96.9 0.00028 9.5E-09 63.0 2.2 37 8-44 14-51 (229)
384 3tqc_A Pantothenate kinase; bi 96.9 0.00038 1.3E-08 65.4 3.1 25 20-44 93-117 (321)
385 1zu4_A FTSY; GTPase, signal re 96.9 0.00012 4.2E-09 68.8 -0.3 36 8-45 96-131 (320)
386 1vma_A Cell division protein F 96.9 0.00017 5.7E-09 67.5 0.1 27 19-45 104-130 (306)
387 1w1w_A Structural maintenance 96.9 0.00037 1.3E-08 68.1 2.6 65 131-205 331-412 (430)
388 2cvh_A DNA repair and recombin 96.9 0.00042 1.4E-08 60.4 2.7 23 19-41 20-42 (220)
389 1f2t_A RAD50 ABC-ATPase; DNA d 96.8 0.00066 2.3E-08 56.4 3.4 21 20-40 24-44 (149)
390 2pez_A Bifunctional 3'-phospho 96.8 0.00062 2.1E-08 57.8 3.3 25 19-43 5-29 (179)
391 1w1w_A Structural maintenance 96.8 0.00051 1.7E-08 67.0 2.5 27 19-45 26-52 (430)
392 3cr8_A Sulfate adenylyltranfer 96.7 0.00042 1.4E-08 69.9 1.7 27 19-45 369-395 (552)
393 3kb2_A SPBC2 prophage-derived 96.7 0.00091 3.1E-08 55.8 3.4 22 21-42 3-24 (173)
394 3nwj_A ATSK2; P loop, shikimat 96.7 0.00075 2.6E-08 61.2 2.8 35 9-43 37-72 (250)
395 1np6_A Molybdopterin-guanine d 96.7 0.00092 3.2E-08 57.1 3.2 24 20-43 7-30 (174)
396 3cm0_A Adenylate kinase; ATP-b 96.7 0.00086 2.9E-08 57.0 3.0 23 19-41 4-26 (186)
397 3t61_A Gluconokinase; PSI-biol 96.6 0.00079 2.7E-08 58.3 2.7 23 20-42 19-41 (202)
398 3lw7_A Adenylate kinase relate 96.6 0.001 3.5E-08 55.3 3.3 20 20-39 2-21 (179)
399 1odf_A YGR205W, hypothetical 3 96.6 0.0012 3.9E-08 61.2 3.4 26 19-44 31-56 (290)
400 3lda_A DNA repair protein RAD5 96.5 0.0018 6E-08 62.8 4.7 25 14-40 175-199 (400)
401 1kht_A Adenylate kinase; phosp 96.5 0.0015 5E-08 55.5 3.6 24 19-42 3-26 (192)
402 1qhx_A CPT, protein (chloramph 96.5 0.0016 5.3E-08 54.9 3.6 25 19-43 3-27 (178)
403 2yvu_A Probable adenylyl-sulfa 96.5 0.0014 4.7E-08 55.9 3.3 25 19-43 13-37 (186)
404 2jaq_A Deoxyguanosine kinase; 96.5 0.0015 5.2E-08 56.0 3.5 22 21-42 2-23 (205)
405 2yv5_A YJEQ protein; hydrolase 96.4 0.00038 1.3E-08 64.8 -0.7 46 196-241 111-164 (302)
406 1ly1_A Polynucleotide kinase; 96.4 0.0017 6E-08 54.5 3.4 22 20-41 3-24 (181)
407 3qks_A DNA double-strand break 96.4 0.0019 6.4E-08 56.4 3.4 21 20-40 24-44 (203)
408 2px0_A Flagellar biosynthesis 96.4 0.0016 5.3E-08 60.5 3.1 26 19-44 105-130 (296)
409 2kmm_A Guanosine-3',5'-BIS(dip 96.3 0.0055 1.9E-07 44.1 5.2 52 263-324 12-63 (73)
410 2v54_A DTMP kinase, thymidylat 96.3 0.0023 7.8E-08 55.1 3.6 25 19-43 4-28 (204)
411 2rhm_A Putative kinase; P-loop 96.3 0.0021 7.2E-08 54.7 3.3 24 19-42 5-28 (193)
412 2plr_A DTMP kinase, probable t 96.3 0.0023 8E-08 55.2 3.5 25 19-43 4-28 (213)
413 1m7g_A Adenylylsulfate kinase; 96.3 0.0021 7.2E-08 56.1 3.2 26 19-44 25-50 (211)
414 1nks_A Adenylate kinase; therm 96.2 0.0023 7.9E-08 54.3 3.2 22 21-42 3-24 (194)
415 2o5v_A DNA replication and rep 96.2 0.0012 4E-08 63.1 1.1 50 130-179 261-330 (359)
416 1via_A Shikimate kinase; struc 96.2 0.0024 8.3E-08 53.8 3.0 22 21-42 6-27 (175)
417 2dr3_A UPF0273 protein PH0284; 96.2 0.003 1E-07 55.9 3.7 26 14-41 20-45 (247)
418 3fb4_A Adenylate kinase; psych 96.2 0.0028 9.6E-08 55.2 3.4 22 21-42 2-23 (216)
419 3trf_A Shikimate kinase, SK; a 96.2 0.0031 1.1E-07 53.4 3.6 24 19-42 5-28 (185)
420 2wwf_A Thymidilate kinase, put 96.1 0.0029 9.8E-08 54.8 3.3 24 19-42 10-33 (212)
421 1vht_A Dephospho-COA kinase; s 96.1 0.0031 1.1E-07 55.1 3.5 23 19-41 4-26 (218)
422 1tev_A UMP-CMP kinase; ploop, 96.1 0.0032 1.1E-07 53.5 3.5 24 19-42 3-26 (196)
423 2c95_A Adenylate kinase 1; tra 96.1 0.0031 1.1E-07 53.8 3.4 24 19-42 9-32 (196)
424 1q3t_A Cytidylate kinase; nucl 96.1 0.0029 1E-07 56.2 3.3 24 19-42 16-39 (236)
425 3dl0_A Adenylate kinase; phosp 96.1 0.0031 1.1E-07 55.0 3.4 22 21-42 2-23 (216)
426 3iij_A Coilin-interacting nucl 96.1 0.003 1E-07 53.4 3.2 24 19-42 11-34 (180)
427 2ffh_A Protein (FFH); SRP54, s 96.1 0.0015 5.3E-08 63.7 1.4 34 8-45 91-124 (425)
428 1gtv_A TMK, thymidylate kinase 96.1 0.0015 5.1E-08 56.7 1.2 23 21-43 2-24 (214)
429 1nn5_A Similar to deoxythymidy 96.1 0.0034 1.2E-07 54.4 3.4 24 19-42 9-32 (215)
430 2bwj_A Adenylate kinase 5; pho 96.0 0.0035 1.2E-07 53.6 3.4 24 19-42 12-35 (199)
431 3m6a_A ATP-dependent protease 96.0 0.0023 7.8E-08 64.5 2.5 26 19-44 108-133 (543)
432 2z0h_A DTMP kinase, thymidylat 96.0 0.0037 1.3E-07 53.3 3.4 22 21-42 2-23 (197)
433 1aky_A Adenylate kinase; ATP:A 96.0 0.0041 1.4E-07 54.4 3.8 24 19-42 4-27 (220)
434 2cdn_A Adenylate kinase; phosp 96.0 0.0041 1.4E-07 53.6 3.6 24 19-42 20-43 (201)
435 2pt5_A Shikimate kinase, SK; a 96.0 0.0042 1.5E-07 51.6 3.5 23 20-42 1-23 (168)
436 2pbr_A DTMP kinase, thymidylat 96.0 0.0041 1.4E-07 52.8 3.4 22 21-42 2-23 (195)
437 3h2y_A GTPase family protein; 95.9 0.0069 2.4E-07 57.9 5.3 52 195-246 96-160 (368)
438 1uf9_A TT1252 protein; P-loop, 95.9 0.004 1.4E-07 53.4 3.2 24 19-42 8-31 (203)
439 2ze6_A Isopentenyl transferase 95.9 0.0037 1.3E-07 56.5 3.1 22 21-42 3-24 (253)
440 1cip_A Protein (guanine nucleo 95.9 0.0044 1.5E-07 58.9 3.7 43 59-108 186-228 (353)
441 1zd8_A GTP:AMP phosphotransfer 95.9 0.0043 1.5E-07 54.7 3.5 24 19-42 7-30 (227)
442 3r20_A Cytidylate kinase; stru 95.9 0.0049 1.7E-07 55.2 3.6 24 19-42 9-32 (233)
443 2dhr_A FTSH; AAA+ protein, hex 95.9 0.0026 8.8E-08 63.4 1.9 31 9-43 58-88 (499)
444 2iyv_A Shikimate kinase, SK; t 95.9 0.0042 1.4E-07 52.6 3.0 23 20-42 3-25 (184)
445 1puj_A YLQF, conserved hypothe 95.8 0.019 6.5E-07 52.7 7.6 50 195-244 50-104 (282)
446 1xjc_A MOBB protein homolog; s 95.8 0.0048 1.6E-07 52.4 3.2 24 20-43 5-28 (169)
447 2p5t_B PEZT; postsegregational 95.8 0.0032 1.1E-07 56.7 2.1 25 19-43 32-56 (253)
448 2vli_A Antibiotic resistance p 95.8 0.0038 1.3E-07 52.6 2.4 24 19-42 5-28 (183)
449 1lv7_A FTSH; alpha/beta domain 95.8 0.0044 1.5E-07 55.6 2.9 23 21-43 47-69 (257)
450 1e6c_A Shikimate kinase; phosp 95.8 0.0049 1.7E-07 51.4 3.1 23 20-42 3-25 (173)
451 1e4v_A Adenylate kinase; trans 95.7 0.0052 1.8E-07 53.6 3.3 22 21-42 2-23 (214)
452 1qf9_A UMP/CMP kinase, protein 95.7 0.0052 1.8E-07 52.0 3.2 23 20-42 7-29 (194)
453 3ec1_A YQEH GTPase; atnos1, at 95.7 0.014 4.6E-07 55.8 6.4 55 195-249 98-165 (369)
454 1gvn_B Zeta; postsegregational 95.7 0.0047 1.6E-07 56.9 3.0 24 19-42 33-56 (287)
455 1zak_A Adenylate kinase; ATP:A 95.7 0.0048 1.6E-07 54.1 2.9 24 19-42 5-28 (222)
456 1zcb_A G alpha I/13; GTP-bindi 95.7 0.0044 1.5E-07 59.2 2.8 42 60-108 195-236 (362)
457 2xb4_A Adenylate kinase; ATP-b 95.7 0.006 2E-07 53.8 3.5 22 21-42 2-23 (223)
458 3be4_A Adenylate kinase; malar 95.7 0.0062 2.1E-07 53.3 3.5 24 19-42 5-28 (217)
459 3sr0_A Adenylate kinase; phosp 95.7 0.0063 2.2E-07 53.3 3.4 23 20-42 1-23 (206)
460 1ukz_A Uridylate kinase; trans 95.6 0.0065 2.2E-07 52.3 3.4 24 19-42 15-38 (203)
461 3ake_A Cytidylate kinase; CMP 95.6 0.0063 2.1E-07 52.3 3.1 22 21-42 4-25 (208)
462 3a4m_A L-seryl-tRNA(SEC) kinas 95.6 0.007 2.4E-07 54.7 3.5 24 19-42 4-27 (260)
463 3tlx_A Adenylate kinase 2; str 95.6 0.0072 2.4E-07 54.1 3.5 24 19-42 29-52 (243)
464 3k1j_A LON protease, ATP-depen 95.6 0.0073 2.5E-07 61.5 4.0 34 10-45 53-86 (604)
465 1zuh_A Shikimate kinase; alpha 95.5 0.0082 2.8E-07 50.0 3.5 23 20-42 8-30 (168)
466 4ad8_A DNA repair protein RECN 95.4 0.0027 9.3E-08 63.4 0.1 31 9-42 53-83 (517)
467 1j8m_F SRP54, signal recogniti 95.4 0.0025 8.5E-08 59.2 -0.2 33 10-45 92-124 (297)
468 2grj_A Dephospho-COA kinase; T 95.3 0.0095 3.3E-07 51.5 3.4 23 20-42 13-35 (192)
469 1jbk_A CLPB protein; beta barr 95.3 0.011 3.8E-07 49.3 3.6 25 19-43 43-67 (195)
470 1ak2_A Adenylate kinase isoenz 95.3 0.011 3.7E-07 52.4 3.6 24 19-42 16-39 (233)
471 3ice_A Transcription terminati 95.3 0.0039 1.3E-07 59.9 0.8 32 9-42 166-197 (422)
472 4ido_A Atlastin-1; GTPase, GTP 95.3 0.01 3.5E-07 58.2 3.6 21 20-40 68-88 (457)
473 3hr8_A Protein RECA; alpha and 95.3 0.01 3.4E-07 56.5 3.5 25 19-43 61-85 (356)
474 3bos_A Putative DNA replicatio 95.2 0.012 4E-07 51.5 3.6 25 19-43 52-76 (242)
475 3umf_A Adenylate kinase; rossm 95.2 0.012 4E-07 52.1 3.5 24 19-42 29-52 (217)
476 1uj2_A Uridine-cytidine kinase 95.2 0.011 3.8E-07 53.0 3.4 24 19-42 22-45 (252)
477 4edh_A DTMP kinase, thymidylat 95.1 0.0076 2.6E-07 53.1 2.0 25 19-43 6-30 (213)
478 2w58_A DNAI, primosome compone 95.1 0.013 4.3E-07 50.4 3.3 24 20-43 55-78 (202)
479 2f6r_A COA synthase, bifunctio 95.0 0.012 4E-07 54.0 3.2 23 19-41 75-97 (281)
480 1ypw_A Transitional endoplasmi 95.0 0.0078 2.7E-07 63.4 2.0 30 12-43 233-262 (806)
481 3cf0_A Transitional endoplasmi 94.9 0.013 4.4E-07 54.1 3.3 25 19-43 49-73 (301)
482 1ltq_A Polynucleotide kinase; 94.9 0.014 4.8E-07 53.5 3.4 22 20-41 3-24 (301)
483 3auy_A DNA double-strand break 94.9 0.017 5.7E-07 55.1 4.0 21 20-40 26-46 (371)
484 3b9p_A CG5977-PA, isoform A; A 94.9 0.014 4.8E-07 53.3 3.3 25 19-43 54-78 (297)
485 2ga8_A Hypothetical 39.9 kDa p 94.8 0.014 4.7E-07 55.5 3.1 23 21-43 26-48 (359)
486 1u0l_A Probable GTPase ENGC; p 94.8 0.022 7.4E-07 52.7 4.4 47 195-241 115-168 (301)
487 2qby_A CDC6 homolog 1, cell di 94.7 0.014 4.9E-07 54.7 3.0 25 19-43 45-69 (386)
488 2p65_A Hypothetical protein PF 94.7 0.015 5E-07 48.5 2.7 25 19-43 43-67 (187)
489 1sxj_C Activator 1 40 kDa subu 94.6 0.015 5E-07 54.5 2.8 22 22-43 49-70 (340)
490 3gmt_A Adenylate kinase; ssgci 94.6 0.02 6.9E-07 51.0 3.5 24 19-42 8-31 (230)
491 1fnn_A CDC6P, cell division co 94.6 0.019 6.4E-07 54.2 3.5 24 21-44 46-69 (389)
492 2ce7_A Cell division protein F 94.6 0.011 3.8E-07 58.4 1.9 23 21-43 51-73 (476)
493 3n70_A Transport activator; si 94.5 0.028 9.6E-07 45.8 3.9 25 19-43 24-48 (145)
494 4ag6_A VIRB4 ATPase, type IV s 94.5 0.017 5.9E-07 55.3 2.9 25 19-43 35-59 (392)
495 3kl4_A SRP54, signal recogniti 94.5 0.016 5.4E-07 56.6 2.6 26 19-44 97-122 (433)
496 2zr9_A Protein RECA, recombina 94.5 0.022 7.6E-07 53.9 3.6 27 14-42 58-84 (349)
497 2qmh_A HPR kinase/phosphorylas 94.4 0.023 8E-07 49.5 3.4 25 19-43 34-58 (205)
498 1njg_A DNA polymerase III subu 94.4 0.023 7.8E-07 49.1 3.4 23 21-43 47-69 (250)
499 1l8q_A Chromosomal replication 94.4 0.018 6.3E-07 53.4 2.8 24 20-43 38-61 (324)
500 2h92_A Cytidylate kinase; ross 94.3 0.023 7.9E-07 49.3 3.2 24 19-42 3-26 (219)
No 1
>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}
Probab=100.00 E-value=9.8e-59 Score=448.82 Aligned_cols=317 Identities=56% Similarity=0.981 Sum_probs=290.3
Q ss_pred CCCCCCeEEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCccccccccccccceEEEECCEeecccCccccccccccCcc
Q 018394 6 SGAGEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKG 85 (356)
Q Consensus 6 ~~~~~s~~v~~~~g~~v~LvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~~D~pGl~~~~~~~~~ 85 (356)
++++.+|+|.++|...|||||+||||||||||+|||..+.+++|||||++|+.|.+.+.|.+++++||||++++++.+.+
T Consensus 59 ~~~~~~f~v~k~g~a~V~ivG~PNvGKSTL~n~Lt~~~~~v~~~pftT~~~~~g~~~~~~~~i~l~D~pGl~~~a~~~~~ 138 (376)
T 4a9a_A 59 GGAGIGFDVARTGVASVGFVGFPSVGKSTLLSKLTGTESEAAEYEFTTLVTVPGVIRYKGAKIQMLDLPGIIDGAKDGRG 138 (376)
T ss_dssp -CCSBTTTBCBCSSEEEEEECCCCHHHHHHHHHHHSBCCCGGGTCSSCCCEEEEEEEETTEEEEEEECGGGCCC-----C
T ss_pred CCCCCCceEeecCCCeEEEECCCCCCHHHHHHHHhCCCCcccCCCCceeeeeeEEEEeCCcEEEEEeCCCccCCchhhhH
Confidence 34678999999999999999999999999999999999999999999999999999999999999999999999888899
Q ss_pred ccccccccccchhHHHHHHhcCChHHHHHHHHHHHHHccCccccccCcccccceeccceeeeecCCCCCCCHHHHHHHHH
Q 018394 86 RGRQVIAVSKSSDIVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILH 165 (356)
Q Consensus 86 ~~~~~~~~~~~~d~i~~v~d~~~~~~~~~~i~~~L~~~~i~l~~~~~~lS~g~~qr~~ial~~DEp~~~LD~~~~~~il~ 165 (356)
++++++..++.+|++++|+|++.+..+.+.+..+|+.+++.+.+++..+...+..+.++.+....+...++.+.++.++.
T Consensus 139 ~g~~~l~~i~~ad~il~vvD~~~p~~~~~~i~~EL~~~~~~l~~k~~~i~~nK~d~~gi~i~~~~~~~~l~~eeik~il~ 218 (376)
T 4a9a_A 139 RGKQVIAVARTCNLLFIILDVNKPLHHKQIIEKELEGVGIRLNKTPPDILIKKKEKGGISITNTVPLTHLGNDEIRAVMS 218 (376)
T ss_dssp HHHHHHHHHHHCSEEEEEEETTSHHHHHHHHHHHHHHTTEEETCCCCCEEEEECSSSCEEEEESSCCSSCCHHHHHHHHH
T ss_pred HHHHHHHHHHhcCccccccccCccHHHHHHHHHHHHHhhHhhccCChhhhhhHhhhhhhhhhcchhhhhccHHHHHHHHH
Confidence 99999999999999999999999888888999999999998888888888888888899988888999999999999999
Q ss_pred HhcccCcEEEEccCCCHHHHHHHHhc-cccccceEEEeecCCCCChhhHHHHhcCCCEEEeccccccchHHHHHHHHHHh
Q 018394 166 EYKIHNAEVLFREDATVDDLIDVIEG-NRKYMKCVYVYNKIDVIGIDDVDKLARQPNSVVISCNLKLNLDRLLARMWEEM 244 (356)
Q Consensus 166 ~l~~~~~~i~~thd~~~~~~~~~i~~-~~~~~p~i~v~NK~Dl~~~~~~~~l~~~~~~i~iSa~~~~~l~~L~~~i~~~l 244 (356)
.+...+..++...+++.+++++.+.. .+.+.|+++++||+|....++++.+.+.+..+++|+..+.|+++|.+++|+.|
T Consensus 219 ~~~lt~kpv~~~~nv~eddl~d~~~~~~~~~~p~i~v~nKid~~~~eele~l~~~~~~~~is~~~e~gLd~Li~~~y~~L 298 (376)
T 4a9a_A 219 EYRINSAEIAFRCDATVDDLIDVLEASSRRYMPAIYVLNKIDSLSIEELELLYRIPNAVPISSGQDWNLDELLQVMWDRL 298 (376)
T ss_dssp HTTCCSEEEEECSCCCHHHHHHHHTTTTCEEECEEEEEECGGGSCHHHHHHHTTSTTEEECCTTTCTTHHHHHHHHHHHH
T ss_pred HhcccCCCeeecccCCHHHHHHHHHHHHhhccceEEEEecccccCHHHHHHHhcccchhhhhhhhcccchhHHHHHHHHc
Confidence 99888888888899999999998864 67789999999999999888888888778899999999999999999999999
Q ss_pred CceEEEeCCCCCCCCCCccEEeecCCCCCCHHHHHHHHHHhHhhcCcEeEEeccCCccCCcccCCCceeCCCCeEEEEec
Q 018394 245 GLVRVYTKPQGQQPDFTEPVVLSVDRGGCTVEDFCNHIHRSLVKDVKYVLVWGTSARHYPQHCGLGHVLQDEDVVQIVKK 324 (356)
Q Consensus 245 ~~i~~~~~~~~~~p~~~~~~~~~~~r~g~~v~~~a~~ih~~l~~~f~~a~~wg~s~~~~~~~vg~~~~l~d~Dvv~i~~~ 324 (356)
+++++||++++..++.+.|..++. .++|+.|+|..||+++.++|+||.+||+++|+.||++|+||+|+|||||+||++
T Consensus 299 ~Li~~fT~g~~E~rawt~~~~~~a--~~at~~D~a~~ih~d~~~~F~~a~v~Gs~~K~~~r~eGkdyvv~DGDVi~iv~k 376 (376)
T 4a9a_A 299 NLVRIYTKPKGQIPDFTDPVVLRS--DRCSVKDFCNQIHKSLVDDFRNALVYGSSVKHQPQYVGLSHILEDEDVVTILKK 376 (376)
T ss_dssp CCEEEEECCSSSCCCSSSCEEEBT--TBCBHHHHHHHHCGGGGGGEEEEEEESTTSSSSSEEECTTCBCCTTCEEEEEEC
T ss_pred CCcEEEeCCCCCcCCCCccccccC--CCCcHHHHHHHHHHHHHHhhhHhhhcCcccCCCCCccCCCcEEcCCCEEEEEeC
Confidence 999999999988888888888877 238999999999999999999999999999999999999999999999999985
No 2
>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2
Probab=100.00 E-value=2e-40 Score=324.27 Aligned_cols=292 Identities=24% Similarity=0.342 Sum_probs=192.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCccccccccccccceEEEE---------------------CC---EeecccCcccc
Q 018394 21 RVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHY---------------------ND---TKIQLLDLPGI 76 (356)
Q Consensus 21 ~v~LvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~---------------------~g---~~i~~~D~pGl 76 (356)
.|+|+|.||||||||||+|++..+.+++|||||++|+.|.+.+ ++ .++.++||||+
T Consensus 2 kI~ivG~pnvGKSTL~n~L~~~~~~~~~~p~tT~~~~~g~~~~~~~~~~~~l~~~~~p~~~~~~~~~~~~~i~lvDtpG~ 81 (397)
T 1wxq_A 2 EIGVVGKPNVGKSTFFSAATLVDVEIANYPFTTIEANVGVTYAITDHPCKELGCSPNPQNYEYRNGLALIPVKMVDVAGL 81 (397)
T ss_dssp EEEEEECTTSSHHHHHHHHHC--------------CCEEEEEEEEECSCSSSCCSCCCSSSCEETTEEEEEEEEEECC--
T ss_pred EEEEECCCCCCHHHHHHHHHCCCCcccCCCCcccCCceEEEeeccCCchHHhhhhcccccccccCCcceEEEEEEECCCc
Confidence 6899999999999999999999888999999999999998643 33 57899999999
Q ss_pred ccccccCccccccccccccchhHHHHHHhcCC-------------hHHHHHHHHHHHHHccC-ccccccCcccccceecc
Q 018394 77 IEGASEGKGRGRQVIAVSKSSDIVLMVLDASK-------------SEGHRQILTKELEAVGL-RLNKRPPQIYFKKKKTG 142 (356)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~d~i~~v~d~~~-------------~~~~~~~i~~~L~~~~i-~l~~~~~~lS~g~~qr~ 142 (356)
..+++.+.+++++++..++.+|++++|+|++. +.++.+.+..+|..+.+ .+++++..+.. +..+.
T Consensus 82 ~~~a~~~~~l~~~~l~~i~~aD~il~VvD~~~~~~~~g~~~~~~dp~~d~~~i~~EL~~~d~~~l~~~~~~~~k-~~~~~ 160 (397)
T 1wxq_A 82 VPGAHEGRGLGNKFLDDLRMASALIHVVDATGKTDPEGQPTDYHDPVEDIEFLEREIDYWIYGILSKGWDKFAK-RIKLQ 160 (397)
T ss_dssp -------------CCCSSTTCSEEEEEEETTCCBCTTSCBCSCCCHHHHHHHHHHHHHHHHHHHHHTTTHHHHS-TTTSS
T ss_pred ccchhhhhhHHHHHHHHHhcCCEEEEEEecccccCCCCcccCCCCcHHHHHHHHHHHHHHHHHHHhhhHHHHHH-HHhhc
Confidence 87666666777888888899999999999865 45677788888877755 45555554441 11111
Q ss_pred ceeee--ecCCC--CCCCHHHHHHHHHHhcccCcEEEEccCCCHHHHHHHHhcccc-ccceEEEeecCCCCChhhHHHHh
Q 018394 143 GISFN--STLPL--THVDEKLCYQILHEYKIHNAEVLFREDATVDDLIDVIEGNRK-YMKCVYVYNKIDVIGIDDVDKLA 217 (356)
Q Consensus 143 ~ial~--~DEp~--~~LD~~~~~~il~~l~~~~~~i~~thd~~~~~~~~~i~~~~~-~~p~i~v~NK~Dl~~~~~~~~l~ 217 (356)
++.+. +.+-+ -+.+.+.+.++++.+..++. ..+|+.++.......... .+|+++|+||+|+...+.++.+.
T Consensus 161 ~~~~~~~~~~~l~g~~~~~~~~~~~l~~l~~~~~----~~~~~~~e~~~l~~~~~~~~kP~i~v~NK~D~~~~~~l~~l~ 236 (397)
T 1wxq_A 161 KIKLESAIAEHLSGIGVNENDVWEAMHKLNLPED----PTKWSQDDLLAFASEIRRVNKPMVIAANKADAASDEQIKRLV 236 (397)
T ss_dssp CCCHHHHHHHHTGGGTCCHHHHHHHHHHTTCCSC----GGGCCHHHHHHHHHHHHHHHSCEEEEEECGGGSCHHHHHHHH
T ss_pred CccHHHHHHHHhcccCCCHHHHHHHHHHhccCCc----cccCCHHHHHHHHHhhhccCCCEEEEEeCccccchHHHHHHH
Confidence 11100 00001 13566778888888876654 236776664444333222 38999999999988554444443
Q ss_pred c-----CCCEEEeccccccchHHH------------------------------------------------H-HHHHHH
Q 018394 218 R-----QPNSVVISCNLKLNLDRL------------------------------------------------L-ARMWEE 243 (356)
Q Consensus 218 ~-----~~~~i~iSa~~~~~l~~L------------------------------------------------~-~~i~~~ 243 (356)
+ ..+++++||+.+.++++| + +.+|+.
T Consensus 237 ~~~~~~~~~vv~iSA~~e~~l~~L~~~~l~~~~p~~~~~~~~~~l~~~~~~~~e~ire~~l~~~g~~g~~~~i~~~~~~~ 316 (397)
T 1wxq_A 237 REEEKRGYIVIPTSAAAELTLRKAAKAGFIEYIPGASEFKVLRDMSEKQKRALMVIKEKVLDRFGSTGVQEVINRVVFDL 316 (397)
T ss_dssp HHHHHTTCEEEEECHHHHHHHHSCSSSCCCCSCC-----------------CTTHHHHHHTSSSSSCSHHHHHHHHHHTT
T ss_pred HHHhhcCCcEEEEeccchhhHHHHHhhhhhhhcCCCccccccccCCHHHHHHHHHHHHHHHHHhCcchHHHHHHHHHHHH
Confidence 2 235899999999887432 1 466899
Q ss_pred hCceEEEeCCCC------CCCCCCccEEeecCCCCCCHHHHHHHHHHhHhhcCcEeEEeccCCccCCcccCCCceeCCCC
Q 018394 244 MGLVRVYTKPQG------QQPDFTEPVVLSVDRGGCTVEDFCNHIHRSLVKDVKYVLVWGTSARHYPQHCGLGHVLQDED 317 (356)
Q Consensus 244 l~~i~~~~~~~~------~~p~~~~~~~~~~~r~g~~v~~~a~~ih~~l~~~f~~a~~wg~s~~~~~~~vg~~~~l~d~D 317 (356)
|+++++||.++. ..+++.++|++++ |+|+.|+|..||+||.++|.||.. ++ .+||||+||+|+|||
T Consensus 317 L~li~vft~~~~~~~~~~~g~~~~~~~~l~~---G~t~~d~a~~iH~d~~~~f~~a~~----~~-~~~~~g~~~~l~dgD 388 (397)
T 1wxq_A 317 LKLIPVYPVHDENKLTDQFGNVLPHVFLMKK---GSTPRDLAFKVHTDLGKGFLYAIN----AR-TKRRVGEDYELQFND 388 (397)
T ss_dssp SCEEEEEEESCC-----CCSCSSCCCEEEET---TCCHHHHHHHHCHHHHHTEEEEEE----TT-TCSBCCTTCCCCTTE
T ss_pred hCCeEEEeecccccccCCcCcccceeEEeCC---CCCHHHHHHHHhHHHHhhhhhhHH----hc-CCEEcCCCccccCCC
Confidence 999999994311 1134678999999 999999999999999999999985 43 889999999999999
Q ss_pred eEEEEecc
Q 018394 318 VVQIVKKK 325 (356)
Q Consensus 318 vv~i~~~~ 325 (356)
||+|++++
T Consensus 389 vv~i~~~~ 396 (397)
T 1wxq_A 389 IVKIVSVT 396 (397)
T ss_dssp EEEEEEC-
T ss_pred EEEEEeCC
Confidence 99999864
No 3
>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2
Probab=100.00 E-value=4.6e-40 Score=316.56 Aligned_cols=285 Identities=21% Similarity=0.291 Sum_probs=199.8
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcCCCCccccccccccccceEEEECC-----------------EeecccCcccccccccc
Q 018394 20 GRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYND-----------------TKIQLLDLPGIIEGASE 82 (356)
Q Consensus 20 ~~v~LvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g-----------------~~i~~~D~pGl~~~~~~ 82 (356)
..|+|+|.||||||||||+|++....+++|||||++|+.|.+.+++ ..++++||||+.++++.
T Consensus 3 ~kI~IVG~pnvGKSTL~n~Lt~~~~~v~~~p~tTi~p~~g~v~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~a~~ 82 (363)
T 1jal_A 3 FKCGIVGLPNVGKSTLFNALTKAGIEAANYPFCTIEPNTGVVPMPDPRLDALAEIVKPERILPTTMEFVDIAGLVAGASK 82 (363)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHTC------CCCCCCCCSSEEECCCHHHHHHHHHHCCSEEECCEEEEEECCSCCTTHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceECceEEEEecCCcccceeeeeecccceeeeEEEEEECCCCcccccc
Confidence 5899999999999999999999888899999999999999999877 46899999999887766
Q ss_pred CccccccccccccchhHHHHHHhcCC------------hHHHHHHHHHHHHHccC-ccccccCcccccceeccceeeeec
Q 018394 83 GKGRGRQVIAVSKSSDIVLMVLDASK------------SEGHRQILTKELEAVGL-RLNKRPPQIYFKKKKTGGISFNST 149 (356)
Q Consensus 83 ~~~~~~~~~~~~~~~d~i~~v~d~~~------------~~~~~~~i~~~L~~~~i-~l~~~~~~lS~g~~qr~~ial~~D 149 (356)
+.+++++++..++.+|++++|+|++. +..+.+.+..+|...++ .+.+++..+... .+.+..-...
T Consensus 83 ~~gl~~~fl~~ir~ad~il~VvD~~~~~~v~~v~~~~dp~~d~~~i~~EL~~~d~~~~~k~~~~~~k~--~k~g~~~~~~ 160 (363)
T 1jal_A 83 GEGLGNKFLANIRETDAIGHVVRCFENDDIVHVAGKIDPLDDIDTINTELALADLDSCERAIQRLQKR--AKGGDKEAKF 160 (363)
T ss_dssp HGGGTCCHHHHHHTCSEEEEEEECSCC---------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HTTTCHHHHH
T ss_pred cchHHHHHHHHHHhcCeEEEEEecCCCCceeeecCCcChHHHHHHHHHHHHhhhHHHHhhHHHHHHHH--hhccchhHHH
Confidence 66777888877888999988888764 45566777777766655 333333322210 0001000000
Q ss_pred CCCCCCCHHHHHHHHHHhcccCcEEEEccCCCHHHHHHHHhc--cccccceEEEeecCCCC--ChhhHHHHhc-----CC
Q 018394 150 LPLTHVDEKLCYQILHEYKIHNAEVLFREDATVDDLIDVIEG--NRKYMKCVYVYNKIDVI--GIDDVDKLAR-----QP 220 (356)
Q Consensus 150 Ep~~~LD~~~~~~il~~l~~~~~~i~~thd~~~~~~~~~i~~--~~~~~p~i~v~NK~Dl~--~~~~~~~l~~-----~~ 220 (356)
-.+.+.++...+..+.. ..+-+|+.++ ...+.. ....+|+++++|+.|.. .....+.+.. ..
T Consensus 161 ------~~~~l~~~~~~L~~~~~--~~~~~~~~~e-~~~l~~~~llt~KPvi~v~N~~e~~~~~n~~~~~v~~~~~~~~~ 231 (363)
T 1jal_A 161 ------ELSVMEKILPVLENAGM--IRSVGLDKEE-LQAIKSYNFLTLKPTMYIANVNEDGFENNPYLDRVREIAAKEGA 231 (363)
T ss_dssp ------HHHHHHHHHHHHHTTCC--GGGSCCCHHH-HHHHGGGCCSTTSCEEEEEECCTTCSSSCHHHHHHHHHHHHTTC
T ss_pred ------HHHHHHHHHHHHhcCCC--ccccCCCHHH-HHHHHHhhcccCCcEEEEEecccccccccHHHHHHHHHHHHcCC
Confidence 00112222222222111 1112455554 233332 33459999999999864 2333344332 23
Q ss_pred CEEEecccc----------------------ccchHHHHHHHHHHhCceEEEeCCCCCCCCCCccEEeecCCCCCCHHHH
Q 018394 221 NSVVISCNL----------------------KLNLDRLLARMWEEMGLVRVYTKPQGQQPDFTEPVVLSVDRGGCTVEDF 278 (356)
Q Consensus 221 ~~i~iSa~~----------------------~~~l~~L~~~i~~~l~~i~~~~~~~~~~p~~~~~~~~~~~r~g~~v~~~ 278 (356)
.++++||+. +.|++.|++++|+.|+++++||.. |++.+||++++ |+|+.++
T Consensus 232 ~~i~~sA~~E~el~~l~~~e~~~~l~~~g~~~~gl~~li~~~~~~L~li~~ft~g----~~e~raw~i~~---G~ta~~a 304 (363)
T 1jal_A 232 VVVPVCAAIESEIAELDDEEKVEFLQDLGIEEPGLNRVIRAGYALLNLQTYFTAG----VKEVRAWTVSV---GATAPKA 304 (363)
T ss_dssp EEEEECHHHHHHGGGSCSSTTHHHHTTSSCCSCTTHHHHHHHHHHTTEEEEEEEC----SSEEEEEEEET---TCBHHHH
T ss_pred CEEEechHHHHHHHhcCHHHHHHHHHHhCcccccHHHHHHHHHHHhCCEEEECCC----CCCcceeEecC---CCcHHHH
Confidence 588999775 367899999999999999999975 57889999999 9999999
Q ss_pred HHHHHHhHhhcCcEeEEecc----------CCccCC--cccCCCceeCCCCeEEEE
Q 018394 279 CNHIHRSLVKDVKYVLVWGT----------SARHYP--QHCGLGHVLQDEDVVQIV 322 (356)
Q Consensus 279 a~~ih~~l~~~f~~a~~wg~----------s~~~~~--~~vg~~~~l~d~Dvv~i~ 322 (356)
|..||+||.++|.+|.+|+. ++|..| +++|+||+++|||||+|.
T Consensus 305 Ag~IH~D~~~gFi~Aev~~~~d~~~~~~~~~~k~~g~~r~egk~y~v~dgDii~f~ 360 (363)
T 1jal_A 305 AAVIHTDFEKGFIRAEVIAYEDFIQFNGENGAKEAGKWRLEGKDYIVQDGDVMHFR 360 (363)
T ss_dssp HHTTCTTHHHHCCEEEEECHHHHHHTTSHHHHHHTTCCEEECTTCBCCTTCEEEEE
T ss_pred HHhhHHHHHhccEEEEEcCHHHHHHhCCHHHHHhcCCeeccCCccEecCCCEEEEE
Confidence 99999999999999999983 267677 777999999999999985
No 4
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=100.00 E-value=3.9e-39 Score=312.92 Aligned_cols=290 Identities=18% Similarity=0.259 Sum_probs=183.8
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHcCCCCccccccccccccceEEEECCE-----------------eecccCccccccccc
Q 018394 19 HGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDT-----------------KIQLLDLPGIIEGAS 81 (356)
Q Consensus 19 g~~v~LvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~-----------------~i~~~D~pGl~~~~~ 81 (356)
+..++|+|+||||||||||+|+|....++++||||++|+.|.+.+.+. .++++||||+..+++
T Consensus 22 ~~kvgIVG~pnvGKSTL~n~Ltg~~~~~~~~p~tTi~p~~g~v~v~~~r~~~l~~~~~p~~~~~~~i~lvDtpGl~~~as 101 (396)
T 2ohf_A 22 SLKIGIVGLPNVGKSTFFNVLTNSQASAENFPFCTIDPNESRVPVPDERFDFLCQYHKPASKIPAFLNVVDIAGLVKGAH 101 (396)
T ss_dssp CCCEEEECCSSSSHHHHHHHHHC-------------CCSEEEEECCCHHHHHHHHHHCCSEEECCEEEEEECCC------
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCCccccCCCccccCceeEEEEECCccceeeccccCcccccccccEEEECCCcccccc
Confidence 579999999999999999999999888999999999999999988763 378999999998777
Q ss_pred cCccccccccccccchhHHHHHHhcC------------ChHHHHHHHHHHHHHccC-ccccccCcccccceeccceeeee
Q 018394 82 EGKGRGRQVIAVSKSSDIVLMVLDAS------------KSEGHRQILTKELEAVGL-RLNKRPPQIYFKKKKTGGISFNS 148 (356)
Q Consensus 82 ~~~~~~~~~~~~~~~~d~i~~v~d~~------------~~~~~~~~i~~~L~~~~i-~l~~~~~~lS~g~~qr~~ial~~ 148 (356)
.+.+++++++..++.+|++++|+|++ .+..+.+.+..+|...++ .+.+....+.... .+.+.
T Consensus 102 ~~~glg~~~l~~ir~aD~Il~VvD~~~~~~i~~v~~~~dP~~di~~i~~El~l~d~~~~~k~~~~~~k~~-~~~g~---- 176 (396)
T 2ohf_A 102 NGQGLGNAFLSHISACDGIFHLTRAFEDDDITHVEGSVDPIRDIEIIHEELQLKDEEMIGPIIDKLEKVA-VRGGD---- 176 (396)
T ss_dssp -----CCHHHHHHHTSSSEEEEEEC------------CTTHHHHHHHHHHHHHHHHHHHHHHHHTTCSCC----------
T ss_pred hhhHHHHHHHHHHHhcCeEEEEEecCCCcchhhhcCCCChHHHHHHhhhhhhhhhHHHHHHhhhhhhhhh-hcccc----
Confidence 77777788888888999998887765 344556667777665544 2222221111000 00000
Q ss_pred cCCCCCCCHHHHHHHHHHhcccCcEEEEccCCCHHHHHHHHhc--cccccceEEEeecCC--CC--ChhhHHHHhc----
Q 018394 149 TLPLTHVDEKLCYQILHEYKIHNAEVLFREDATVDDLIDVIEG--NRKYMKCVYVYNKID--VI--GIDDVDKLAR---- 218 (356)
Q Consensus 149 DEp~~~LD~~~~~~il~~l~~~~~~i~~thd~~~~~~~~~i~~--~~~~~p~i~v~NK~D--l~--~~~~~~~l~~---- 218 (356)
............+...+..+...+....+++.++ ++.+.. ...++|+++++|+.+ +. ....+..+..
T Consensus 177 --~~~~~~~~ll~~i~~~L~e~~~~~~~~~~~~~~e-~e~i~~~~llt~KPviy~~Nv~e~~~~~~~n~~~~~v~~~~~~ 253 (396)
T 2ohf_A 177 --KKLKPEYDIMCKVKSWVIDQKKPVRFYHDWNDKE-IEVLNKHLFLTSKPMVYLVNLSEKDYIRKKNKWLIKIKEWVDK 253 (396)
T ss_dssp -----CCHHHHHHHHHHHTTC--CCGGGCCCCCHHH-HHHHHHHCCGGGSCEEEEEECCHHHHHHTCCHHHHHHHHHHHH
T ss_pred --hhhhhHHHHHHHHHHHHHhcCcchhhcccCCHHH-HHHHHHHHHHhCCceEEEEEecHHHhcccccHHHHHHHHHHHh
Confidence 0001111222233333332211111123677664 223332 345799999999973 32 1222222321
Q ss_pred ---CCCEEEeccccc---------------------cchHHHHHHHHHHhCceEEEeCCCCCCCCCCccEEeecCCCCCC
Q 018394 219 ---QPNSVVISCNLK---------------------LNLDRLLARMWEEMGLVRVYTKPQGQQPDFTEPVVLSVDRGGCT 274 (356)
Q Consensus 219 ---~~~~i~iSa~~~---------------------~~l~~L~~~i~~~l~~i~~~~~~~~~~p~~~~~~~~~~~r~g~~ 274 (356)
...++++||+.+ .|++.|.++.|+.|+++++||.+ |++.+||++++ |+|
T Consensus 254 ~~~~~~~v~~sa~~E~~l~~l~~~e~~~~l~~~g~~~~l~~li~~~~~~L~li~~fT~g----~~evrawti~~---g~t 326 (396)
T 2ohf_A 254 YDPGALVIPFSGALELKLQELSAEERQKYLEANMTQSALPKIIKAGFAALQLEYFFTAG----PDEVRAWTIRK---GTK 326 (396)
T ss_dssp HSTTCEEEEECHHHHHHHHHSCHHHHHHHHHHTTCCCSHHHHHHHHHHHTTEEEEEEES----SSEEEEEEEET---TCB
T ss_pred hCCCCeEEEEEcHHHHHHhhCCHHHHHHHHHHhCCCchHHHHHHHHHHHhCCEEEECCC----CCcceeEEecC---CCc
Confidence 134899999875 35899999999999999999996 57889999999 999
Q ss_pred HHHHHHHHHHhHhhcCcEeEEe--------cc--CCccCC--cccCCCceeCCCCeEEEEe
Q 018394 275 VEDFCNHIHRSLVKDVKYVLVW--------GT--SARHYP--QHCGLGHVLQDEDVVQIVK 323 (356)
Q Consensus 275 v~~~a~~ih~~l~~~f~~a~~w--------g~--s~~~~~--~~vg~~~~l~d~Dvv~i~~ 323 (356)
+.++|..||+||.++|.||.|| |. ++|..| +++|+||+|+|||||+|--
T Consensus 327 a~~aAg~IH~D~~~gFi~Aev~~~~d~~~~g~~~~~k~~g~~r~~Gk~y~v~dgDii~f~f 387 (396)
T 2ohf_A 327 APQAAGKIHTDFEKGFIMAEVMKYEDFKEEGSENAVKAAGKYRQQGRNYIVEDGDIIFFKF 387 (396)
T ss_dssp HHHHHHTTCTHHHHHEEEEEEECHHHHHHHCSHHHHHHTTCCEEECTTCBCCTTCEEEEEE
T ss_pred HHHHHhhhHHHHHhcceEEEEccHHHHHHhCCHHHHHhcCcccccCCCceeeCCCEEEEEe
Confidence 9999999999999999999999 65 477777 9999999999999999853
No 5
>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A
Probab=100.00 E-value=1.1e-38 Score=308.49 Aligned_cols=283 Identities=20% Similarity=0.269 Sum_probs=199.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCccccccccccccceEEEEC---------------------CEeecccCccccccc
Q 018394 21 RVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYN---------------------DTKIQLLDLPGIIEG 79 (356)
Q Consensus 21 ~v~LvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~---------------------g~~i~~~D~pGl~~~ 79 (356)
.++|+|+||||||||||+|++..+.+++|||||++|+.|.+.+. +..++++||||+..+
T Consensus 3 ~v~IVG~pnvGKSTL~n~L~~~~~~v~~~p~~Ti~pn~g~~~v~~~~l~~~~~~~~~~~~~~~~~~~~i~lvDtpGl~~~ 82 (368)
T 2dby_A 3 AVGIVGLPNVGKSTLFNALTRANALAANYPFATIDKNVGVVPLEDERLYALQRTFAKGERVPPVVPTHVEFVDIAGLVKG 82 (368)
T ss_dssp SEEEECCSSSSHHHHHHHHHHHHTTCSSCCGGGGSTTEEEEECCCHHHHHHHHHHCBTTBCCCEECCEEEEEECCSCCCC
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCcccCCCCceeccceeeEecChHHHHHHHHHhcccccccccCCceEEEEECCCcccc
Confidence 68999999999999999999987779999999999999988654 346889999999887
Q ss_pred cccCccccccccccccchhHHHHHHhcCC------------hHHHHHHHHHHHHHccC-ccccccCcccccceeccceee
Q 018394 80 ASEGKGRGRQVIAVSKSSDIVLMVLDASK------------SEGHRQILTKELEAVGL-RLNKRPPQIYFKKKKTGGISF 146 (356)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~d~i~~v~d~~~------------~~~~~~~i~~~L~~~~i-~l~~~~~~lS~g~~qr~~ial 146 (356)
++.+.+++++++..++.+|++++|+|++. +..+.+.+..+|...++ .+.+++..+... .+.
T Consensus 83 a~~~~~lg~~fl~~ir~ad~ii~VvD~~~~~~~~~v~~~~dp~~d~~~i~~EL~~~d~~~l~k~~~~~~~~--~~~---- 156 (368)
T 2dby_A 83 AHKGEGLGNQFLAHIREVAAIAHVLRCFPDPDVVHVMGRVDPLEDAEVVETELLLADLATLERRLERLRKE--ARA---- 156 (368)
T ss_dssp CCSSSCTTHHHHHHHHTCSEEEEEEECCCCH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHH----
T ss_pred ccccchHHHHHHHHHHhCCEEEEEEECCCCCceeEeecccChHHHHHHHhhHHHHccHHHHHHHHHHHHhh--hcc----
Confidence 77777777888878888999888888764 33455566666765554 233322222110 000
Q ss_pred eecCCCCCCCHHHHHHHHHHhcccCcEEEEccCCCHHHHHHHHhc--cccccceEEEeecCCC--CC---hhhHHHHhc-
Q 018394 147 NSTLPLTHVDEKLCYQILHEYKIHNAEVLFREDATVDDLIDVIEG--NRKYMKCVYVYNKIDV--IG---IDDVDKLAR- 218 (356)
Q Consensus 147 ~~DEp~~~LD~~~~~~il~~l~~~~~~i~~thd~~~~~~~~~i~~--~~~~~p~i~v~NK~Dl--~~---~~~~~~l~~- 218 (356)
+. ....-...+.+++..+..+... .+-+|+.++ ...+.. ....+|+++++||.|. .. ...++.+..
T Consensus 157 --~~-~~~~~~~~l~~~~~~L~~~~~~--~~~~~~~~~-~~~l~~~~~lt~KPvi~v~N~~e~d~~~~~~n~~~~~v~~~ 230 (368)
T 2dby_A 157 --DR-ERLPLLEAAEGLYVHLQEGKPA--RTFPPSEAV-ARFLKETPLLTAKPVIYVANVAEEDLPDGRGNPQVEAVRRK 230 (368)
T ss_dssp --CG-GGHHHHHHHHHHHHHHHTTCCG--GGSCCCHHH-HHHHHHSCCGGGSCEEEEEECCGGGTTTCTTCHHHHHHHHH
T ss_pred --ch-hHHHHHHHHHHHHHHHhcCCCc--ccCCCCHHH-HHHHHHHhhhhcCCeEEeccccHHhhcccchhhHHHHHHHH
Confidence 00 0000001122222222222111 123454443 222322 3345899999999963 32 233333322
Q ss_pred ----CCCEEEecccc----------------------ccchHHHHHHHHHHhCceEEEeCCCCCCCCCCccEEeecCCCC
Q 018394 219 ----QPNSVVISCNL----------------------KLNLDRLLARMWEEMGLVRVYTKPQGQQPDFTEPVVLSVDRGG 272 (356)
Q Consensus 219 ----~~~~i~iSa~~----------------------~~~l~~L~~~i~~~l~~i~~~~~~~~~~p~~~~~~~~~~~r~g 272 (356)
..+++++||++ +.|++.|++++|+.|+++++||.. |++.+||++++ |
T Consensus 231 a~~~g~~vv~iSAk~E~el~eL~~~~~~~~l~~~g~~~~gl~~li~~~~~~L~li~~ft~g----~~e~~aw~i~~---g 303 (368)
T 2dby_A 231 ALEEGAEVVVVSARLEAELAELSGEEARELLAAYGLQESGLQRLARAGYRALDLLTFFTAG----EKEVRAWTVRR---G 303 (368)
T ss_dssp HHHHTCEEEEECHHHHHHHHTSCHHHHHHHHHHTTCCSCHHHHHHHHHHHHTTEEEEEEES----SSCEEEEEEET---T
T ss_pred HHHcCCeEEEeechhHHHHHHhchHHHHHHHHHhCcchhhHHHHHHHHHHHhCCEEEECCC----CCCcceEEecC---C
Confidence 24689999887 367889999999999999999985 67899999999 9
Q ss_pred CCHHHHHHHHHHhHhhcCcEeEEecc----------CCccCC--cccCCCceeCCCCeEEEE
Q 018394 273 CTVEDFCNHIHRSLVKDVKYVLVWGT----------SARHYP--QHCGLGHVLQDEDVVQIV 322 (356)
Q Consensus 273 ~~v~~~a~~ih~~l~~~f~~a~~wg~----------s~~~~~--~~vg~~~~l~d~Dvv~i~ 322 (356)
+|+.++|..||+||.++|.||.+|+. .+|..| +++|+||+++|||||+|.
T Consensus 304 ~ta~~~a~~IH~d~~~~fi~A~v~~~~d~~~~~~~~~~k~~g~~r~~gk~y~v~dgdi~~~~ 365 (368)
T 2dby_A 304 TKAPRAAGEIHSDMERGFIRAEVIPWDKLVEAGGWARAKERGWVRLEGKDYEVQDGDVIYVL 365 (368)
T ss_dssp CBHHHHHHHHCHHHHHSCCEEEEEEHHHHHHHTSHHHHHHTTCCEEECTTCBCCTTEEEEEE
T ss_pred CcHHHHHHhhHHHHHhhCeEEEEccHHHHHHhCCHHHHHhcCCccccCCCceecCCCEEEEE
Confidence 99999999999999999999999983 267777 777999999999999985
No 6
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=100.00 E-value=8.3e-37 Score=297.12 Aligned_cols=287 Identities=17% Similarity=0.247 Sum_probs=200.6
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHcCCC-CccccccccccccceEEEECC-----------------EeecccCcccccccc
Q 018394 19 HGRVALIGFPSVGKSTLLTLLTGTHS-EAASYEFTTLTCIPGIIHYND-----------------TKIQLLDLPGIIEGA 80 (356)
Q Consensus 19 g~~v~LvG~~gaGKSTLln~L~g~~~-~vs~~p~TT~~~~~G~i~~~g-----------------~~i~~~D~pGl~~~~ 80 (356)
+..++|+|+||||||||||+|+|... .+++|||||++|+.|.+.+.| ..+.++|+||+..+.
T Consensus 20 g~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~~p~tTi~p~~G~v~v~~~r~~~l~~~~~~~~~v~~~i~lvD~pGl~~~~ 99 (392)
T 1ni3_A 20 NLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDIAGLTKGA 99 (392)
T ss_dssp CCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECCHHHHHHHHHHCCSEEECEEEEEECTGGGCCCC
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCCcccccCCCceeecceeeeeeeCCcchhhhhhhcccccccCcceEEEeccccccCC
Confidence 68999999999999999999999886 899999999999999999987 467899999998877
Q ss_pred ccCccccccccccccchhHHHHHHhcCC------------hHHHHHHHHHHHHHccC-ccccccCcccccceeccceeee
Q 018394 81 SEGKGRGRQVIAVSKSSDIVLMVLDASK------------SEGHRQILTKELEAVGL-RLNKRPPQIYFKKKKTGGISFN 147 (356)
Q Consensus 81 ~~~~~~~~~~~~~~~~~d~i~~v~d~~~------------~~~~~~~i~~~L~~~~i-~l~~~~~~lS~g~~qr~~ial~ 147 (356)
+.+.+++++++..++.+|.++++++++. +..+...+.+.+...++ .+.+.+..+..-.. +.+..++
T Consensus 100 s~~e~L~~~fl~~ir~~d~il~Vvd~~~d~~i~~v~~~~dP~~di~ildeel~~~D~~~~~k~~~~l~~~~~-~~g~ti~ 178 (392)
T 1ni3_A 100 STGVGLGNAFLSHVRAVDAIYQVVRAFDDAEIIHVEGDVDPIRDLSIIVDELLIKDAEFVEKHLEGLRKITS-RGANTLE 178 (392)
T ss_dssp CSSSSSCHHHHHHHTTCSEEEEEEECCCTTCSSCCSSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC-CSSCSSS
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHhccccceeeeeccccCcchhhhhchhhhHHHHHHHHHHHHHHHHHHHH-hcCCccc
Confidence 7666677778777888888888877653 33355555555554443 11111111100000 0000000
Q ss_pred ecCCCCCCCHHHHHHHHHHh----cccCcEEEEccCCCHHHHHHHHhc--cccccceEEEeecCCC--C-C-hhhHHHHh
Q 018394 148 STLPLTHVDEKLCYQILHEY----KIHNAEVLFREDATVDDLIDVIEG--NRKYMKCVYVYNKIDV--I-G-IDDVDKLA 217 (356)
Q Consensus 148 ~DEp~~~LD~~~~~~il~~l----~~~~~~i~~thd~~~~~~~~~i~~--~~~~~p~i~v~NK~Dl--~-~-~~~~~~l~ 217 (356)
.-+...+.+++..+ ..+... +...+++.++. +.+.. ...++|+++++|+.|. . . .+.++.+.
T Consensus 179 ------sh~~~~~~~l~~~i~~~L~~G~~~-~~~~~~~~~e~-e~i~~~~~lt~kp~~y~~Nv~e~~~~~~~~~~~~~~~ 250 (392)
T 1ni3_A 179 ------MKAKKEEQAIIEKVYQYLTETKQP-IRKGDWSNREV-EIINSLYLLTAKPVIYLVNMSERDFLRQKNKYLPKIK 250 (392)
T ss_dssp ------HHHHHHHHHHHHHHHHHHHTTCSC-GGGSCCCHHHH-HHHHTTCCGGGSCEEEEEECCHHHHTTTCCSSHHHHH
T ss_pred ------cccHHHHHHHHHHHHHHhccCCce-eecCCCCHHHH-HHHHHHhhhccCceEEEEEecchhhcccchHHHHHHH
Confidence 00111223333322 222011 12245665543 33322 4556999999999973 2 1 23333332
Q ss_pred c-----C--CCEEEecccc---------------------ccchHHHHHHHHHHhCceEEEeCCCCCCCCCCccEEeecC
Q 018394 218 R-----Q--PNSVVISCNL---------------------KLNLDRLLARMWEEMGLVRVYTKPQGQQPDFTEPVVLSVD 269 (356)
Q Consensus 218 ~-----~--~~~i~iSa~~---------------------~~~l~~L~~~i~~~l~~i~~~~~~~~~~p~~~~~~~~~~~ 269 (356)
. . ..++++||+. +.|++.|+++.++.|+++++||.+ |++.++|++++
T Consensus 251 ~~~~~~~p~~~~v~~sa~~E~~l~~l~~~~~~~~l~~~g~~~gl~~~i~~~~~~L~l~~~ft~g----~~e~rawti~~- 325 (392)
T 1ni3_A 251 KWIDENSPGDTLIPMSVAFEERLTNFTEEEAIEECKKLNTKSMLPKIIVTGYNALNLINYFTCG----EDEVRSWTIRK- 325 (392)
T ss_dssp HHHHTTSTTCCEEEECHHHHHHHTTSCHHHHHHHHHHTTCCCSHHHHHHHHHHHTTEEEEEECC----SSEEEEEEEET-
T ss_pred HHHHhcCCCCeEEEEEhHHHHHHhhCCHHHHHHHHHHhCCcccHHHHHHHHHHHhCCEEEECCC----CCcceeEEeCC-
Confidence 2 2 3589999987 578999999999999999999986 56789999999
Q ss_pred CCCCCHHHHHHHHHHhHhhcCcEeEEe--------ccC--Ccc-CCcc-cCCCceeCCCCeEEE
Q 018394 270 RGGCTVEDFCNHIHRSLVKDVKYVLVW--------GTS--ARH-YPQH-CGLGHVLQDEDVVQI 321 (356)
Q Consensus 270 r~g~~v~~~a~~ih~~l~~~f~~a~~w--------g~s--~~~-~~~~-vg~~~~l~d~Dvv~i 321 (356)
|+|+.++|..||+||.++|.+|.+| |.. +|. .++| .|+||+++|||||++
T Consensus 326 --G~~a~~aag~IH~d~~~gfi~ae~~~~~d~~~~g~~~~~k~~g~~r~~gk~y~v~dgdv~~f 387 (392)
T 1ni3_A 326 --GTKAPQAAGVIHTDFEKAFVVGEIMHYQDLFDYKTENACRAAGKYLTKGKEYVMESGDIAHW 387 (392)
T ss_dssp --TCBHHHHHHHHCHHHHHTCSEEEEECHHHHHHHTSHHHHHHTTCSCEEETTCBCCTTCEEEC
T ss_pred --CCcHHHHccccchhhhhccEEEEECCHHHHHHcCCHHHHHHcCCccccCCceeeeCCCEEEE
Confidence 9999999999999999999999999 533 343 3466 999999999999987
No 7
>2eki_A DRG 1, developmentally-regulated GTP-binding protein 1; protein NEDD3, neural precursor cell expressed developmentally DOWN-regulated protein 3; NMR {Homo sapiens}
Probab=99.95 E-value=1.9e-28 Score=186.93 Aligned_cols=84 Identities=57% Similarity=0.959 Sum_probs=79.9
Q ss_pred HHHhCceEEEeCCCCCCCCCCccEEe-ecCCCCCCHHHHHHHHHHhHhhcCcEeEEeccCCccCCcccCCCceeCCCCeE
Q 018394 241 WEEMGLVRVYTKPQGQQPDFTEPVVL-SVDRGGCTVEDFCNHIHRSLVKDVKYVLVWGTSARHYPQHCGLGHVLQDEDVV 319 (356)
Q Consensus 241 ~~~l~~i~~~~~~~~~~p~~~~~~~~-~~~r~g~~v~~~a~~ih~~l~~~f~~a~~wg~s~~~~~~~vg~~~~l~d~Dvv 319 (356)
|+.|+++|+||+++|..|++++|+++ ++ |+|++|+|++||++|.+.|+||+|||+|+||+|||||+||+|+|||||
T Consensus 6 ~~~L~lIrVYtk~~G~~pd~~dpviL~~~---GsTv~Dfa~~IH~di~~~fkyA~VwG~saK~~~qrVgldh~L~d~DVV 82 (93)
T 2eki_A 6 SGYLKLVRIYTKPKGQLPDYTSPVVLPYS---RTTVEDFCMKIHKNLIKEFKYALVWGLSVKHNPQKVGKDHTLEDEDVI 82 (93)
T ss_dssp SSSCCEEEEEECCTTSCCCSSSCEEEETT---SCCHHHHHHHHCTTCTTTEEEEEEBSTTSSSSSEEECSSCCCCSSEEE
T ss_pred hhhcCeEEEEeCCCCCCCCCCCCEEEecC---CCCHHHHHHHHHHHHHhhccEEEEecccccCCCEECCCCcEecCCCEE
Confidence 67899999999999999999999999 77 999999999999999999999999999999999999999999999999
Q ss_pred EEEecccc
Q 018394 320 QIVKKKEK 327 (356)
Q Consensus 320 ~i~~~~~~ 327 (356)
+|++++..
T Consensus 83 ~Iv~~~~~ 90 (93)
T 2eki_A 83 QIVKKSGP 90 (93)
T ss_dssp CEEECCSC
T ss_pred EEEeCCCC
Confidence 99997443
No 8
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=99.93 E-value=6.9e-26 Score=206.41 Aligned_cols=177 Identities=18% Similarity=0.182 Sum_probs=128.3
Q ss_pred CCCCeEEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCccccccccccccceEEEECCEeecccCccccccccccCcccc
Q 018394 8 AGEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRG 87 (356)
Q Consensus 8 ~~~s~~v~~~~g~~v~LvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~~D~pGl~~~~~~~~~~~ 87 (356)
+++||++.+ |++++|+|||||||||||++|+|...| ..|.|.++|.++...+...+.......+++.
T Consensus 22 ~~isl~i~~--Ge~~~iiG~nGsGKSTLl~~l~Gl~~p-----------~~G~I~~~g~~~~~~~~~~~~~~~~~~i~~v 88 (235)
T 3tif_A 22 KNVNLNIKE--GEFVSIMGPSGSGKSTMLNIIGCLDKP-----------TEGEVYIDNIKTNDLDDDELTKIRRDKIGFV 88 (235)
T ss_dssp EEEEEEECT--TCEEEEECSTTSSHHHHHHHHTTSSCC-----------SEEEEEETTEECTTCCHHHHHHHHHHHEEEE
T ss_pred EeeeEEEcC--CCEEEEECCCCCcHHHHHHHHhcCCCC-----------CceEEEECCEEcccCCHHHHHHHhhccEEEE
Confidence 578999999 889999999999999999999999877 8999999999876544322211112235555
Q ss_pred ccccccccc---hhHHHHHHhcC-----ChHHHHHHHHHHHHHccC--c-cccccCcccccceecccee---------ee
Q 018394 88 RQVIAVSKS---SDIVLMVLDAS-----KSEGHRQILTKELEAVGL--R-LNKRPPQIYFKKKKTGGIS---------FN 147 (356)
Q Consensus 88 ~~~~~~~~~---~d~i~~v~d~~-----~~~~~~~~i~~~L~~~~i--~-l~~~~~~lS~g~~qr~~ia---------l~ 147 (356)
+|....+.. .+.+.+..... ......+.+.+.|+.+++ . .++++.+||+||+||++|| ++
T Consensus 89 ~Q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~QRv~iAral~~~p~lll 168 (235)
T 3tif_A 89 FQQFNLIPLLTALENVELPLIFKYRGAMSGEERRKRALECLKMAELEERFANHKPNQLSGGQQQRVAIARALANNPPIIL 168 (235)
T ss_dssp CTTCCCCTTSCHHHHHHHHHHTCSSSCCCHHHHHHHHHHHHHHTTCCGGGTTCCGGGSCHHHHHHHHHHHHHTTCCSEEE
T ss_pred ecCCccCCCCcHHHHHHHHHHhhhccCCCHHHHHHHHHHHHHHCCCChhhhhCChhhCCHHHHHHHHHHHHHHcCCCEEE
Confidence 665544433 45555433221 233445678889999998 3 4889999999999999998 99
Q ss_pred ecCCCCCCCHHHHHHHH---HHhcc--cCcEEEEccCCCHHHHHHHHhccccccceEEEeecCCC
Q 018394 148 STLPLTHVDEKLCYQIL---HEYKI--HNAEVLFREDATVDDLIDVIEGNRKYMKCVYVYNKIDV 207 (356)
Q Consensus 148 ~DEp~~~LD~~~~~~il---~~l~~--~~~~i~~thd~~~~~~~~~i~~~~~~~p~i~v~NK~Dl 207 (356)
+||||++||+.....++ +.+.. +.++|++|||++... ++..+++++..-+
T Consensus 169 lDEPts~LD~~~~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~----------~~d~i~~l~~G~i 223 (235)
T 3tif_A 169 ADQPTWALDSKTGEKIMQLLKKLNEEDGKTVVVVTHDINVAR----------FGERIIYLKDGEV 223 (235)
T ss_dssp EESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEECSCHHHHT----------TSSEEEEEETTEE
T ss_pred EeCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEcCCHHHHH----------hCCEEEEEECCEE
Confidence 99999999998855544 44432 569999999974322 3467777776543
No 9
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=99.93 E-value=1.5e-25 Score=215.43 Aligned_cols=186 Identities=19% Similarity=0.208 Sum_probs=138.3
Q ss_pred CCCCeEEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCccccccccccccceEEEECCEeecccCccccccccccCcccc
Q 018394 8 AGEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRG 87 (356)
Q Consensus 8 ~~~s~~v~~~~g~~v~LvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~~D~pGl~~~~~~~~~~~ 87 (356)
+++||+|.+ |+++||+||||||||||+++|+|...| ..|.|.++|.++...+...+.. ....+++.
T Consensus 45 ~~vsl~i~~--Gei~~IiGpnGaGKSTLlr~i~GL~~p-----------~~G~I~i~G~~i~~~~~~~~~~-~r~~Ig~v 110 (366)
T 3tui_C 45 NNVSLHVPA--GQIYGVIGASGAGKSTLIRCVNLLERP-----------TEGSVLVDGQELTTLSESELTK-ARRQIGMI 110 (366)
T ss_dssp EEEEEEECT--TCEEEEECCTTSSHHHHHHHHHTSSCC-----------SEEEEEETTEECSSCCHHHHHH-HHTTEEEE
T ss_pred EeeEEEEcC--CCEEEEEcCCCchHHHHHHHHhcCCCC-----------CceEEEECCEECCcCCHHHHHH-HhCcEEEE
Confidence 478999999 889999999999999999999999877 8999999999986554332211 12456777
Q ss_pred ccccccccc---hhHHHHHHhcC--ChHHHHHHHHHHHHHccC--ccccccCcccccceecccee---------eeecCC
Q 018394 88 RQVIAVSKS---SDIVLMVLDAS--KSEGHRQILTKELEAVGL--RLNKRPPQIYFKKKKTGGIS---------FNSTLP 151 (356)
Q Consensus 88 ~~~~~~~~~---~d~i~~v~d~~--~~~~~~~~i~~~L~~~~i--~l~~~~~~lS~g~~qr~~ia---------l~~DEp 151 (356)
+|....+.. .+++.+..... ...+..+++.++|+.+|+ ..++++.+||+||+||++|| +++|||
T Consensus 111 ~Q~~~l~~~~TV~env~~~~~~~~~~~~~~~~~v~~lL~~vgL~~~~~~~~~~LSGGqkQRVaIArAL~~~P~lLLlDEP 190 (366)
T 3tui_C 111 FQHFNLLSSRTVFGNVALPLELDNTPKDEVKRRVTELLSLVGLGDKHDSYPSNLSGGQKQRVAIARALASNPKVLLCDQA 190 (366)
T ss_dssp CSSCCCCTTSCHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTCGGGTTCCTTTSCHHHHHHHHHHHHTTTCCSEEEEEST
T ss_pred eCCCccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEECC
Confidence 776554443 56665544332 233455678899999999 78999999999999999998 999999
Q ss_pred CCCCCHHHHHHHH---HHhcc--cCcEEEEccCCCHHHHHHHHhccccccceEEEeecCCCCChhhHHHH
Q 018394 152 LTHVDEKLCYQIL---HEYKI--HNAEVLFREDATVDDLIDVIEGNRKYMKCVYVYNKIDVIGIDDVDKL 216 (356)
Q Consensus 152 ~~~LD~~~~~~il---~~l~~--~~~~i~~thd~~~~~~~~~i~~~~~~~p~i~v~NK~Dl~~~~~~~~l 216 (356)
|++||+....+++ +.+.. +.|++++|||++.... .+..++++++.-+......+++
T Consensus 191 Ts~LD~~~~~~i~~lL~~l~~~~g~Tii~vTHdl~~~~~---------~aDrv~vl~~G~iv~~g~~~ev 251 (366)
T 3tui_C 191 TSALDPATTRSILELLKDINRRLGLTILLITHEMDVVKR---------ICDCVAVISNGELIEQDTVSEV 251 (366)
T ss_dssp TTTSCHHHHHHHHHHHHHHHHHSCCEEEEEESCHHHHHH---------HCSEEEEEETTEEEECCBHHHH
T ss_pred CccCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHH---------hCCEEEEEECCEEEEEcCHHHH
Confidence 9999998855554 44432 4599999999765432 2477888887655433333333
No 10
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=99.92 E-value=5.7e-25 Score=211.20 Aligned_cols=177 Identities=18% Similarity=0.189 Sum_probs=132.7
Q ss_pred CCCCeEEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCccccccccccccceEEEECCEeecccCccccccccccCcccc
Q 018394 8 AGEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRG 87 (356)
Q Consensus 8 ~~~s~~v~~~~g~~v~LvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~~D~pGl~~~~~~~~~~~ 87 (356)
+++||++.+ |++++|+|||||||||||++|+|...| .+|.|.++|.++.-.++ . .......+++.
T Consensus 21 ~~vsl~i~~--Ge~~~llGpsGsGKSTLLr~iaGl~~p-----------~~G~I~i~G~~i~~~~~-~-~~~~~r~ig~v 85 (359)
T 3fvq_A 21 NDISLSLDP--GEILFIIGASGCGKTTLLRCLAGFEQP-----------DSGEISLSGKTIFSKNT-N-LPVRERRLGYL 85 (359)
T ss_dssp EEEEEEECT--TCEEEEEESTTSSHHHHHHHHHTSSCC-----------SEEEEEETTEEEESSSC-B-CCGGGSCCEEE
T ss_pred EeeEEEEcC--CCEEEEECCCCchHHHHHHHHhcCCCC-----------CCcEEEECCEECccccc-c-cchhhCCEEEE
Confidence 478999999 889999999999999999999999877 89999999998842111 1 11123457777
Q ss_pred ccccccccc---hhHHHHHHhcC--ChHHHHHHHHHHHHHccC--ccccccCcccccceecccee---------eeecCC
Q 018394 88 RQVIAVSKS---SDIVLMVLDAS--KSEGHRQILTKELEAVGL--RLNKRPPQIYFKKKKTGGIS---------FNSTLP 151 (356)
Q Consensus 88 ~~~~~~~~~---~d~i~~v~d~~--~~~~~~~~i~~~L~~~~i--~l~~~~~~lS~g~~qr~~ia---------l~~DEp 151 (356)
+|....+.. .+++.+.+... ...+..+++.+.|+.+++ .+++++.+||+||+||++|| +++|||
T Consensus 86 fQ~~~l~p~ltV~eni~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~r~~~~LSGGq~QRValArAL~~~P~lLLLDEP 165 (359)
T 3fvq_A 86 VQEGVLFPHLTVYRNIAYGLGNGKGRTAQERQRIEAMLELTGISELAGRYPHELSGGQQQRAALARALAPDPELILLDEP 165 (359)
T ss_dssp CTTCCCCTTSCHHHHHHTTSTTSSCCSHHHHHHHHHHHHHHTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEEEST
T ss_pred eCCCcCCCCCCHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCC
Confidence 777666655 44444432221 233445678899999999 78999999999999999998 999999
Q ss_pred CCCCCHHHHHHHHHHh----c-ccCcEEEEccCCCHHHHHHHHhccccccceEEEeecCCCC
Q 018394 152 LTHVDEKLCYQILHEY----K-IHNAEVLFREDATVDDLIDVIEGNRKYMKCVYVYNKIDVI 208 (356)
Q Consensus 152 ~~~LD~~~~~~il~~l----~-~~~~~i~~thd~~~~~~~~~i~~~~~~~p~i~v~NK~Dl~ 208 (356)
|++||+....+++..+ + .+.++|++|||.+.... .+..++++++.-+.
T Consensus 166 ts~LD~~~r~~l~~~l~~~~~~~g~tvi~vTHd~~ea~~---------~aDri~vl~~G~i~ 218 (359)
T 3fvq_A 166 FSALDEQLRRQIREDMIAALRANGKSAVFVSHDREEALQ---------YADRIAVMKQGRIL 218 (359)
T ss_dssp TTTSCHHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHHH---------HCSEEEEEETTEEE
T ss_pred cccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHH---------HCCEEEEEECCEEE
Confidence 9999998866555433 2 24599999999765432 24778888877554
No 11
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=99.92 E-value=6.4e-25 Score=204.32 Aligned_cols=177 Identities=21% Similarity=0.232 Sum_probs=129.8
Q ss_pred CCCCeEEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCccccccccccccceEEEECCEeecccCccccccccccCcccc
Q 018394 8 AGEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRG 87 (356)
Q Consensus 8 ~~~s~~v~~~~g~~v~LvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~~D~pGl~~~~~~~~~~~ 87 (356)
+++||++.+ |++++|+||||||||||+++|+|...| ..|.|.++|.++...+ .... .....+++.
T Consensus 25 ~~isl~i~~--Ge~~~iiGpnGsGKSTLl~~l~Gl~~p-----------~~G~I~~~G~~i~~~~-~~~~-~~~~~ig~v 89 (275)
T 3gfo_A 25 KGINMNIKR--GEVTAILGGNGVGKSTLFQNFNGILKP-----------SSGRILFDNKPIDYSR-KGIM-KLRESIGIV 89 (275)
T ss_dssp EEEEEEEET--TSEEEEECCTTSSHHHHHHHHTTSSCC-----------SEEEEEETTEECCCSH-HHHH-HHHHSEEEE
T ss_pred EeeEEEEcC--CCEEEEECCCCCCHHHHHHHHHcCCCC-----------CCeEEEECCEECCccc-ccHH-HHhCcEEEE
Confidence 589999999 889999999999999999999999877 7999999999874211 1111 112345555
Q ss_pred ccccc----cccchhHHHHHHhcC--ChHHHHHHHHHHHHHccC--ccccccCcccccceecccee---------eeecC
Q 018394 88 RQVIA----VSKSSDIVLMVLDAS--KSEGHRQILTKELEAVGL--RLNKRPPQIYFKKKKTGGIS---------FNSTL 150 (356)
Q Consensus 88 ~~~~~----~~~~~d~i~~v~d~~--~~~~~~~~i~~~L~~~~i--~l~~~~~~lS~g~~qr~~ia---------l~~DE 150 (356)
+|... .....+.+.+..... ...+..+++.+.|+.+++ ..++++.+||+||+||++|| +++||
T Consensus 90 ~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~iAraL~~~P~lLlLDE 169 (275)
T 3gfo_A 90 FQDPDNQLFSASVYQDVSFGAVNMKLPEDEIRKRVDNALKRTGIEHLKDKPTHCLSFGQKKRVAIAGVLVMEPKVLILDE 169 (275)
T ss_dssp CSSGGGTCCSSBHHHHHHHHHHTSCCCHHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHHHHHHHHTTCCSEEEEEC
T ss_pred EcCcccccccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEEC
Confidence 65431 123355565544332 233445678899999999 68899999999999999998 99999
Q ss_pred CCCCCCHHHHHH---HHHHhc-c-cCcEEEEccCCCHHHHHHHHhccccccceEEEeecCCCC
Q 018394 151 PLTHVDEKLCYQ---ILHEYK-I-HNAEVLFREDATVDDLIDVIEGNRKYMKCVYVYNKIDVI 208 (356)
Q Consensus 151 p~~~LD~~~~~~---il~~l~-~-~~~~i~~thd~~~~~~~~~i~~~~~~~p~i~v~NK~Dl~ 208 (356)
||++||+..... +++.+. . +.++|++|||.+.... ++..++++++.-+.
T Consensus 170 Pts~LD~~~~~~i~~~l~~l~~~~g~tvi~vtHdl~~~~~---------~~drv~~l~~G~i~ 223 (275)
T 3gfo_A 170 PTAGLDPMGVSEIMKLLVEMQKELGITIIIATHDIDIVPL---------YCDNVFVMKEGRVI 223 (275)
T ss_dssp TTTTCCHHHHHHHHHHHHHHHHHHCCEEEEEESCCSSGGG---------GCSEEEEEETTEEE
T ss_pred ccccCCHHHHHHHHHHHHHHHhhCCCEEEEEecCHHHHHH---------hCCEEEEEECCEEE
Confidence 999999987554 455554 2 5699999999875432 34677888765443
No 12
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=99.92 E-value=4.7e-25 Score=199.44 Aligned_cols=175 Identities=15% Similarity=0.153 Sum_probs=124.1
Q ss_pred CCCCeEEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCccccccccccccceEEEECCEeecccCccccccccccCcccc
Q 018394 8 AGEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRG 87 (356)
Q Consensus 8 ~~~s~~v~~~~g~~v~LvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~~D~pGl~~~~~~~~~~~ 87 (356)
.++||++.+ |++++|+||||||||||+++|+|...| ..|.|.++|.++...+...........+++.
T Consensus 21 ~~vsl~i~~--Ge~~~iiG~nGsGKSTLl~~l~Gl~~p-----------~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~v 87 (224)
T 2pcj_A 21 KGISLSVKK--GEFVSIIGASGSGKSTLLYILGLLDAP-----------TEGKVFLEGKEVDYTNEKELSLLRNRKLGFV 87 (224)
T ss_dssp EEEEEEEET--TCEEEEEECTTSCHHHHHHHHTTSSCC-----------SEEEEEETTEECCSSCHHHHHHHHHHHEEEE
T ss_pred eeeEEEEcC--CCEEEEECCCCCCHHHHHHHHhcCCCC-----------CceEEEECCEECCCCCHHHHHHHHhCcEEEE
Confidence 578999999 889999999999999999999999876 7999999999875433211100001234444
Q ss_pred ccccccc---cchhHHHHHHhcC--ChHHHHHHHHHHHHHccC--ccccccCcccccceecccee---------eeecCC
Q 018394 88 RQVIAVS---KSSDIVLMVLDAS--KSEGHRQILTKELEAVGL--RLNKRPPQIYFKKKKTGGIS---------FNSTLP 151 (356)
Q Consensus 88 ~~~~~~~---~~~d~i~~v~d~~--~~~~~~~~i~~~L~~~~i--~l~~~~~~lS~g~~qr~~ia---------l~~DEp 151 (356)
.|....+ ...+.+.+..... ......+.+.+.|+.+++ .+++++.+||+||+||++|| +++|||
T Consensus 88 ~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~laral~~~p~lllLDEP 167 (224)
T 2pcj_A 88 FQFHYLIPELTALENVIVPMLKMGKPKKEAKERGEYLLSELGLGDKLSRKPYELSGGEQQRVAIARALANEPILLFADEP 167 (224)
T ss_dssp CSSCCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCTTCTTCCGGGSCHHHHHHHHHHHHTTTCCSEEEEEST
T ss_pred ecCcccCCCCCHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCC
Confidence 5543333 3345555443322 222334568889999999 67899999999999999998 999999
Q ss_pred CCCCCHHHHHHH---HHHhc-ccCcEEEEccCCCHHHHHHHHhccccccceEEEeecC
Q 018394 152 LTHVDEKLCYQI---LHEYK-IHNAEVLFREDATVDDLIDVIEGNRKYMKCVYVYNKI 205 (356)
Q Consensus 152 ~~~LD~~~~~~i---l~~l~-~~~~~i~~thd~~~~~~~~~i~~~~~~~p~i~v~NK~ 205 (356)
|++||+.....+ ++.+. .+.+++++|||....+ .+..++++++.
T Consensus 168 t~~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~~~~~----------~~d~v~~l~~G 215 (224)
T 2pcj_A 168 TGNLDSANTKRVMDIFLKINEGGTSIVMVTHERELAE----------LTHRTLEMKDG 215 (224)
T ss_dssp TTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHT----------TSSEEEEEETT
T ss_pred CCCCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHH----------hCCEEEEEECC
Confidence 999999885554 44443 3459999999954321 23566666643
No 13
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=99.92 E-value=9.6e-25 Score=211.04 Aligned_cols=173 Identities=19% Similarity=0.233 Sum_probs=133.7
Q ss_pred CCCCeEEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCccccccccccccceEEEECCEeecccCccccccccccCcccc
Q 018394 8 AGEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRG 87 (356)
Q Consensus 8 ~~~s~~v~~~~g~~v~LvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~~D~pGl~~~~~~~~~~~ 87 (356)
+++||++.+ |++++|+|||||||||||++|+|...| ..|.|.++|.++..... ....+++.
T Consensus 20 ~~vsl~i~~--Ge~~~llGpsGsGKSTLLr~iaGl~~p-----------~~G~I~i~G~~~~~~~~------~~r~ig~V 80 (381)
T 3rlf_A 20 KDINLDIHE--GEFVVFVGPSGCGKSTLLRMIAGLETI-----------TSGDLFIGEKRMNDTPP------AERGVGMV 80 (381)
T ss_dssp EEEEEEECT--TCEEEEECCTTSSHHHHHHHHHTSSCC-----------SEEEEEETTEECTTCCG------GGSCEEEE
T ss_pred eeeEEEECC--CCEEEEEcCCCchHHHHHHHHHcCCCC-----------CCeEEEECCEECCCCCH------HHCCEEEE
Confidence 578999999 889999999999999999999999877 89999999998764321 12456777
Q ss_pred ccccccccc---hhHHHHHHhcC--ChHHHHHHHHHHHHHccC--ccccccCcccccceecccee---------eeecCC
Q 018394 88 RQVIAVSKS---SDIVLMVLDAS--KSEGHRQILTKELEAVGL--RLNKRPPQIYFKKKKTGGIS---------FNSTLP 151 (356)
Q Consensus 88 ~~~~~~~~~---~d~i~~v~d~~--~~~~~~~~i~~~L~~~~i--~l~~~~~~lS~g~~qr~~ia---------l~~DEp 151 (356)
+|....+.. .+++.+..... ...+..+++.+.|+.+++ .+++++.+||+||+||++|| +++|||
T Consensus 81 fQ~~~l~p~ltV~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~p~~LSGGqrQRVaiArAL~~~P~lLLLDEP 160 (381)
T 3rlf_A 81 FQSYALYPHLSVAENMSFGLKLAGAKKEVINQRVNQVAEVLQLAHLLDRKPKALSGGQRQRVAIGRTLVAEPSVFLLDEP 160 (381)
T ss_dssp CTTCCCCTTSCHHHHHTHHHHHTTCCHHHHHHHHHHHHHHTTCGGGTTCCGGGSCHHHHHHHHHHHHHHHCCSEEEEEST
T ss_pred ecCCcCCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhcCChhHCCHHHHHHHHHHHHHHcCCCEEEEECC
Confidence 777665544 56665554432 233445678899999999 78999999999999999998 999999
Q ss_pred CCCCCHHHHHHH---HHHhcc--cCcEEEEccCCCHHHHHHHHhccccccceEEEeecCCCC
Q 018394 152 LTHVDEKLCYQI---LHEYKI--HNAEVLFREDATVDDLIDVIEGNRKYMKCVYVYNKIDVI 208 (356)
Q Consensus 152 ~~~LD~~~~~~i---l~~l~~--~~~~i~~thd~~~~~~~~~i~~~~~~~p~i~v~NK~Dl~ 208 (356)
|++||+....++ |+.+.. +.++|++|||.+.... .+..++++++.-+.
T Consensus 161 ts~LD~~~~~~l~~~l~~l~~~~g~tii~vTHd~~ea~~---------~aDri~vl~~G~i~ 213 (381)
T 3rlf_A 161 LSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQVEAMT---------LADKIVVLDAGRVA 213 (381)
T ss_dssp TTTSCHHHHHHHHHHHHHHHHHHCCEEEEECSCHHHHHH---------HCSEEEEEETTEEE
T ss_pred CcCCCHHHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHH---------hCCEEEEEECCEEE
Confidence 999999875554 444432 5699999999754322 24778888876554
No 14
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=99.91 E-value=1.9e-24 Score=207.52 Aligned_cols=173 Identities=18% Similarity=0.200 Sum_probs=130.6
Q ss_pred CCCCeEEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCccccccccccccceEEEECCEeecccCccccccccccCcccc
Q 018394 8 AGEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRG 87 (356)
Q Consensus 8 ~~~s~~v~~~~g~~v~LvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~~D~pGl~~~~~~~~~~~ 87 (356)
.++||++.+ |++++|+|||||||||||++|+|...| .+|.|.++|.++... +. ....+++.
T Consensus 32 ~~vsl~i~~--Ge~~~llGpnGsGKSTLLr~iaGl~~p-----------~~G~I~i~g~~i~~~--~~----~~r~ig~v 92 (355)
T 1z47_A 32 RGVSFQIRE--GEMVGLLGPSGSGKTTILRLIAGLERP-----------TKGDVWIGGKRVTDL--PP----QKRNVGLV 92 (355)
T ss_dssp EEEEEEEET--TCEEEEECSTTSSHHHHHHHHHTSSCC-----------SEEEEEETTEECTTC--CG----GGSSEEEE
T ss_pred eeeEEEECC--CCEEEEECCCCCcHHHHHHHHhCCCCC-----------CccEEEECCEECCcC--Ch----hhCcEEEE
Confidence 478999999 889999999999999999999999877 899999999987532 21 12346666
Q ss_pred ccccccccc---hhHHHHHHhcC--ChHHHHHHHHHHHHHccC--ccccccCcccccceecccee---------eeecCC
Q 018394 88 RQVIAVSKS---SDIVLMVLDAS--KSEGHRQILTKELEAVGL--RLNKRPPQIYFKKKKTGGIS---------FNSTLP 151 (356)
Q Consensus 88 ~~~~~~~~~---~d~i~~v~d~~--~~~~~~~~i~~~L~~~~i--~l~~~~~~lS~g~~qr~~ia---------l~~DEp 151 (356)
+|....+.. .+++.+..... ......+++.++|+.+++ .+++++.+||+||+||++|| +++|||
T Consensus 93 ~Q~~~l~~~ltv~eni~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~r~~~~LSGGq~QRvalArAL~~~P~lLLLDEP 172 (355)
T 1z47_A 93 FQNYALFQHMTVYDNVSFGLREKRVPKDEMDARVRELLRFMRLESYANRFPHELSGGQQQRVALARALAPRPQVLLFDEP 172 (355)
T ss_dssp CGGGCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEEEST
T ss_pred ecCcccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCC
Confidence 776555443 56666554332 223345678899999999 68999999999999999998 999999
Q ss_pred CCCCCHHHHHHHHH---Hhcc--cCcEEEEccCCCHHHHHHHHhccccccceEEEeecCCCC
Q 018394 152 LTHVDEKLCYQILH---EYKI--HNAEVLFREDATVDDLIDVIEGNRKYMKCVYVYNKIDVI 208 (356)
Q Consensus 152 ~~~LD~~~~~~il~---~l~~--~~~~i~~thd~~~~~~~~~i~~~~~~~p~i~v~NK~Dl~ 208 (356)
|++||+....++++ .+.. +.++|++|||.+.... ....++++++.-+.
T Consensus 173 ~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~---------~adri~vl~~G~i~ 225 (355)
T 1z47_A 173 FAAIDTQIRRELRTFVRQVHDEMGVTSVFVTHDQEEALE---------VADRVLVLHEGNVE 225 (355)
T ss_dssp TCCSSHHHHHHHHHHHHHHHHHHTCEEEEECSCHHHHHH---------HCSEEEEEETTEEE
T ss_pred cccCCHHHHHHHHHHHHHHHHhcCCEEEEECCCHHHHHH---------hCCEEEEEECCEEE
Confidence 99999988555544 4432 5699999999754322 23667777765443
No 15
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=99.91 E-value=3.7e-24 Score=197.50 Aligned_cols=173 Identities=21% Similarity=0.159 Sum_probs=124.4
Q ss_pred CCCCeEEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCccccccccccccceEEEECCEeecccCccccccccccCcccc
Q 018394 8 AGEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRG 87 (356)
Q Consensus 8 ~~~s~~v~~~~g~~v~LvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~~D~pGl~~~~~~~~~~~ 87 (356)
+++||++.+ |++++|+||||||||||+++|+|...| ..|.|.++|.++...+... .....+++.
T Consensus 24 ~~vsl~i~~--Ge~~~liG~nGsGKSTLlk~l~Gl~~p-----------~~G~i~~~g~~~~~~~~~~---~~~~~i~~v 87 (257)
T 1g6h_A 24 DGVSISVNK--GDVTLIIGPNGSGKSTLINVITGFLKA-----------DEGRVYFENKDITNKEPAE---LYHYGIVRT 87 (257)
T ss_dssp EEECCEEET--TCEEEEECSTTSSHHHHHHHHTTSSCC-----------SEEEEEETTEECTTCCHHH---HHHHTEEEC
T ss_pred eeeEEEEeC--CCEEEEECCCCCCHHHHHHHHhCCCCC-----------CCcEEEECCEECCCCCHHH---HHhCCEEEE
Confidence 578999999 889999999999999999999999876 7999999998875322111 112234555
Q ss_pred cccccccc---chhHHHHHHhc---------------CChHHHHHHHHHHHHHccC--ccccccCcccccceecccee--
Q 018394 88 RQVIAVSK---SSDIVLMVLDA---------------SKSEGHRQILTKELEAVGL--RLNKRPPQIYFKKKKTGGIS-- 145 (356)
Q Consensus 88 ~~~~~~~~---~~d~i~~v~d~---------------~~~~~~~~~i~~~L~~~~i--~l~~~~~~lS~g~~qr~~ia-- 145 (356)
.|....+. ..+.+.+.... .......+.+.+.|+.+++ .+++++.+||+||+||++||
T Consensus 88 ~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkQrv~iAra 167 (257)
T 1g6h_A 88 FQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLKLSHLYDRKAGELSGGQMKLVEIGRA 167 (257)
T ss_dssp CCCCGGGGGSBHHHHHHGGGTSTTSCHHHHHHHCSSCCCCHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHHHHHHH
T ss_pred ccCCccCCCCcHHHHHHHHHhhhccCcccccccccccCCHHHHHHHHHHHHHHcCCchhhCCCchhCCHHHHHHHHHHHH
Confidence 55443333 24444432211 1112334568889999999 67899999999999999998
Q ss_pred -------eeecCCCCCCCHHHHHHHH---HHhcc-cCcEEEEccCCCHHHHHHHHhccccccceEEEeecC
Q 018394 146 -------FNSTLPLTHVDEKLCYQIL---HEYKI-HNAEVLFREDATVDDLIDVIEGNRKYMKCVYVYNKI 205 (356)
Q Consensus 146 -------l~~DEp~~~LD~~~~~~il---~~l~~-~~~~i~~thd~~~~~~~~~i~~~~~~~p~i~v~NK~ 205 (356)
+++||||++||+.....++ +.+.. +.++|++|||.+.... .+..++++++.
T Consensus 168 L~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vtHd~~~~~~---------~~d~v~~l~~G 229 (257)
T 1g6h_A 168 LMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKAKGITFLIIEHRLDIVLN---------YIDHLYVMFNG 229 (257)
T ss_dssp HHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCCSTTGG---------GCSEEEEEETT
T ss_pred HHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHH---------hCCEEEEEECC
Confidence 9999999999998855544 44433 4599999999865321 24667777654
No 16
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=99.91 E-value=1.9e-24 Score=199.92 Aligned_cols=176 Identities=15% Similarity=0.114 Sum_probs=125.2
Q ss_pred CCCCeEEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCccccccccccccceEEEECCEeecccCccccccccccCcccc
Q 018394 8 AGEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRG 87 (356)
Q Consensus 8 ~~~s~~v~~~~g~~v~LvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~~D~pGl~~~~~~~~~~~ 87 (356)
.++||++.+ |++++|+||||||||||+++|+|...| ..|.|.++|.++. .+..... .....+++.
T Consensus 41 ~~vsl~i~~--Gei~~liG~NGsGKSTLlk~l~Gl~~p-----------~~G~I~~~g~~i~-~~~~~~~-~~~~~i~~v 105 (263)
T 2olj_A 41 KGINVHIRE--GEVVVVIGPSGSGKSTFLRCLNLLEDF-----------DEGEIIIDGINLK-AKDTNLN-KVREEVGMV 105 (263)
T ss_dssp EEEEEEECT--TCEEEEECCTTSSHHHHHHHHTTSSCC-----------SEEEEEETTEESS-STTCCHH-HHHHHEEEE
T ss_pred EeeEEEEcC--CCEEEEEcCCCCcHHHHHHHHHcCCCC-----------CCcEEEECCEECC-CccccHH-HHhCcEEEE
Confidence 478999998 889999999999999999999999876 7999999999875 2211111 011224444
Q ss_pred cccccccc---chhHHHHHH-hcC--ChHHHHHHHHHHHHHccC--ccccccCcccccceecccee---------eeecC
Q 018394 88 RQVIAVSK---SSDIVLMVL-DAS--KSEGHRQILTKELEAVGL--RLNKRPPQIYFKKKKTGGIS---------FNSTL 150 (356)
Q Consensus 88 ~~~~~~~~---~~d~i~~v~-d~~--~~~~~~~~i~~~L~~~~i--~l~~~~~~lS~g~~qr~~ia---------l~~DE 150 (356)
.|....+. ..+.+.+.. ... ......+.+.++|+.+++ .+++++.+||+||+||++|| +++||
T Consensus 106 ~Q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~lAraL~~~p~lllLDE 185 (263)
T 2olj_A 106 FQRFNLFPHMTVLNNITLAPMKVRKWPREKAEAKAMELLDKVGLKDKAHAYPDSLSGGQAQRVAIARALAMEPKIMLFDE 185 (263)
T ss_dssp CSSCCCCTTSCHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEEES
T ss_pred eCCCcCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchHhcCChhhCCHHHHHHHHHHHHHHCCCCEEEEeC
Confidence 55433333 345555432 221 222334568889999999 67899999999999999998 99999
Q ss_pred CCCCCCHHHHHHH---HHHhcc-cCcEEEEccCCCHHHHHHHHhccccccceEEEeecCCC
Q 018394 151 PLTHVDEKLCYQI---LHEYKI-HNAEVLFREDATVDDLIDVIEGNRKYMKCVYVYNKIDV 207 (356)
Q Consensus 151 p~~~LD~~~~~~i---l~~l~~-~~~~i~~thd~~~~~~~~~i~~~~~~~p~i~v~NK~Dl 207 (356)
||++||+.....+ ++.+.. +.++|++|||.+.... .+..++++++.-+
T Consensus 186 Pts~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~~~~~~---------~~d~v~~l~~G~i 237 (263)
T 2olj_A 186 PTSALDPEMVGEVLSVMKQLANEGMTMVVVTHEMGFARE---------VGDRVLFMDGGYI 237 (263)
T ss_dssp TTTTSCHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHH---------HCSEEEEEETTEE
T ss_pred CcccCCHHHHHHHHHHHHHHHhCCCEEEEEcCCHHHHHH---------hCCEEEEEECCEE
Confidence 9999999885554 444433 4599999999654321 2366777776544
No 17
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=99.91 E-value=5.9e-24 Score=205.68 Aligned_cols=178 Identities=19% Similarity=0.206 Sum_probs=130.5
Q ss_pred CCCCeEEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCccccccccccccceEEEECCEeecccCcccc-ccccccCccc
Q 018394 8 AGEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGI-IEGASEGKGR 86 (356)
Q Consensus 8 ~~~s~~v~~~~g~~v~LvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~~D~pGl-~~~~~~~~~~ 86 (356)
.++||++.+ |++++|+|||||||||||++|+|...| ..|.|.++|.++.-.. .+. .......+++
T Consensus 20 ~~vsl~i~~--Ge~~~llGpnGsGKSTLLr~iaGl~~p-----------~~G~I~i~g~~~~~~~-~~~~~~~~~r~ig~ 85 (372)
T 1g29_1 20 REMSLEVKD--GEFMILLGPSGCGKTTTLRMIAGLEEP-----------SRGQIYIGDKLVADPE-KGIFVPPKDRDIAM 85 (372)
T ss_dssp EEEEEEEET--TCEEEEECSTTSSHHHHHHHHHTSSCC-----------SEEEEEETTEEEEEGG-GTEECCGGGSSEEE
T ss_pred eeeEEEEcC--CCEEEEECCCCcHHHHHHHHHHcCCCC-----------CccEEEECCEECcccc-ccccCCHhHCCEEE
Confidence 478999999 889999999999999999999999877 8999999999875310 000 0011235666
Q ss_pred cccccccccc---hhHHHHHHhcC--ChHHHHHHHHHHHHHccC--ccccccCcccccceecccee---------eeecC
Q 018394 87 GRQVIAVSKS---SDIVLMVLDAS--KSEGHRQILTKELEAVGL--RLNKRPPQIYFKKKKTGGIS---------FNSTL 150 (356)
Q Consensus 87 ~~~~~~~~~~---~d~i~~v~d~~--~~~~~~~~i~~~L~~~~i--~l~~~~~~lS~g~~qr~~ia---------l~~DE 150 (356)
.+|....+.. .+++.+..... ......+++.+.|+.+++ .+++++.+||+||+||++|| +++||
T Consensus 86 v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSGGq~QRvalArAL~~~P~lLLLDE 165 (372)
T 1g29_1 86 VFQSYALYPHMTVYDNIAFPLKLRKVPRQEIDQRVREVAELLGLTELLNRKPRELSGGQRQRVALGRAIVRKPQVFLMDE 165 (372)
T ss_dssp ECSCCCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHTCGGGTTCCGGGSCHHHHHHHHHHHHHHTCCSEEEEEC
T ss_pred EeCCCccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEECC
Confidence 6776554443 56666654432 223335678899999999 68999999999999999998 99999
Q ss_pred CCCCCCHHHHHHHHH---Hhcc--cCcEEEEccCCCHHHHHHHHhccccccceEEEeecCCCC
Q 018394 151 PLTHVDEKLCYQILH---EYKI--HNAEVLFREDATVDDLIDVIEGNRKYMKCVYVYNKIDVI 208 (356)
Q Consensus 151 p~~~LD~~~~~~il~---~l~~--~~~~i~~thd~~~~~~~~~i~~~~~~~p~i~v~NK~Dl~ 208 (356)
||++||+....+++. .+.. +.++|++|||...... ....++++++.-+.
T Consensus 166 P~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~---------~adri~vl~~G~i~ 219 (372)
T 1g29_1 166 PLSNLDAKLRVRMRAELKKLQRQLGVTTIYVTHDQVEAMT---------MGDRIAVMNRGVLQ 219 (372)
T ss_dssp TTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHH---------HCSEEEEEETTEEE
T ss_pred CCccCCHHHHHHHHHHHHHHHHhcCCEEEEECCCHHHHHH---------hCCEEEEEeCCEEE
Confidence 999999988555544 4432 5699999999754322 23667788766443
No 18
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=99.91 E-value=4.4e-24 Score=205.66 Aligned_cols=173 Identities=17% Similarity=0.182 Sum_probs=130.4
Q ss_pred CCCCeEEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCccccccccccccceEEEECCEeecccCccccccccccCcccc
Q 018394 8 AGEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRG 87 (356)
Q Consensus 8 ~~~s~~v~~~~g~~v~LvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~~D~pGl~~~~~~~~~~~ 87 (356)
.++||++.+ |++++|+|||||||||||++|+|...| ..|.|.++|.++.... . ....+++.
T Consensus 20 ~~vsl~i~~--Ge~~~llGpnGsGKSTLLr~iaGl~~p-----------~~G~I~i~g~~i~~~~--~----~~r~ig~v 80 (362)
T 2it1_A 20 NNINLKIKD--GEFMALLGPSGSGKSTLLYTIAGIYKP-----------TSGKIYFDEKDVTELP--P----KDRNVGLV 80 (362)
T ss_dssp EEEEEEECT--TCEEEEECCTTSSHHHHHHHHHTSSCC-----------SEEEEEETTEECTTSC--G----GGTTEEEE
T ss_pred EeeEEEECC--CCEEEEECCCCchHHHHHHHHhcCCCC-----------CceEEEECCEECCcCC--H----hHCcEEEE
Confidence 578999999 889999999999999999999999877 8999999999875332 1 12346666
Q ss_pred ccccccccc---hhHHHHHHhcC--ChHHHHHHHHHHHHHccC--ccccccCcccccceecccee---------eeecCC
Q 018394 88 RQVIAVSKS---SDIVLMVLDAS--KSEGHRQILTKELEAVGL--RLNKRPPQIYFKKKKTGGIS---------FNSTLP 151 (356)
Q Consensus 88 ~~~~~~~~~---~d~i~~v~d~~--~~~~~~~~i~~~L~~~~i--~l~~~~~~lS~g~~qr~~ia---------l~~DEp 151 (356)
+|....+.. .+++.+..... ...+..+++.+.|+.+++ .+++++.+||+||+||++|| +++|||
T Consensus 81 ~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSGGq~QRvalArAL~~~P~lLLLDEP 160 (362)
T 2it1_A 81 FQNWALYPHMTVYKNIAFPLELRKAPREEIDKKVREVAKMLHIDKLLNRYPWQLSGGQQQRVAIARALVKEPEVLLLDEP 160 (362)
T ss_dssp CTTCCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCTTCTTCCGGGSCHHHHHHHHHHHHHTTCCSEEEEESG
T ss_pred ecCcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchHhhCChhhCCHHHHHHHHHHHHHHcCCCEEEEECc
Confidence 776555443 56666654332 223345678899999999 68999999999999999998 999999
Q ss_pred CCCCCHHHHHHHHH---Hhcc--cCcEEEEccCCCHHHHHHHHhccccccceEEEeecCCCC
Q 018394 152 LTHVDEKLCYQILH---EYKI--HNAEVLFREDATVDDLIDVIEGNRKYMKCVYVYNKIDVI 208 (356)
Q Consensus 152 ~~~LD~~~~~~il~---~l~~--~~~~i~~thd~~~~~~~~~i~~~~~~~p~i~v~NK~Dl~ 208 (356)
|++||+....+++. .+.. +.++|++|||.+.... ....++++++.-+.
T Consensus 161 ~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~---------~adri~vl~~G~i~ 213 (362)
T 2it1_A 161 LSNLDALLRLEVRAELKRLQKELGITTVYVTHDQAEALA---------MADRIAVIREGEIL 213 (362)
T ss_dssp GGGSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHH---------HCSEEEEEETTEEE
T ss_pred cccCCHHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHH---------hCCEEEEEECCEEE
Confidence 99999988555544 4432 5699999999754321 23667777766443
No 19
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=99.90 E-value=2.3e-24 Score=206.65 Aligned_cols=172 Identities=13% Similarity=0.120 Sum_probs=128.2
Q ss_pred CCCCeEEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCccccccccccccceEEEECCEeecccCccccccccccCcccc
Q 018394 8 AGEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRG 87 (356)
Q Consensus 8 ~~~s~~v~~~~g~~v~LvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~~D~pGl~~~~~~~~~~~ 87 (356)
.++||++.+ |++++|+|||||||||||++|+|...| ..|.|.++|.++.- .+. ....+++.
T Consensus 17 ~~vsl~i~~--Ge~~~llGpnGsGKSTLLr~iaGl~~p-----------~~G~I~~~g~~i~~--~~~----~~r~ig~v 77 (348)
T 3d31_A 17 DNLSLKVES--GEYFVILGPTGAGKTLFLELIAGFHVP-----------DSGRILLDGKDVTD--LSP----EKHDIAFV 77 (348)
T ss_dssp EEEEEEECT--TCEEEEECCCTHHHHHHHHHHHTSSCC-----------SEEEEEETTEECTT--SCH----HHHTCEEE
T ss_pred eeeEEEEcC--CCEEEEECCCCccHHHHHHHHHcCCCC-----------CCcEEEECCEECCC--Cch----hhCcEEEE
Confidence 578999999 889999999999999999999999877 89999999998753 221 12346666
Q ss_pred ccccccccc---hhHHHHHHhcCChHHHHHHHHHHHHHccC--ccccccCcccccceecccee---------eeecCCCC
Q 018394 88 RQVIAVSKS---SDIVLMVLDASKSEGHRQILTKELEAVGL--RLNKRPPQIYFKKKKTGGIS---------FNSTLPLT 153 (356)
Q Consensus 88 ~~~~~~~~~---~d~i~~v~d~~~~~~~~~~i~~~L~~~~i--~l~~~~~~lS~g~~qr~~ia---------l~~DEp~~ 153 (356)
+|....+.. .+++.+.......... +++.+.|+.+++ .+++++.+||+||+||++|| +++||||+
T Consensus 78 ~Q~~~l~~~ltv~enl~~~~~~~~~~~~-~~v~~~l~~~~L~~~~~~~~~~LSgGq~QRvalAraL~~~P~lLLLDEP~s 156 (348)
T 3d31_A 78 YQNYSLFPHMNVKKNLEFGMRMKKIKDP-KRVLDTARDLKIEHLLDRNPLTLSGGEQQRVALARALVTNPKILLLDEPLS 156 (348)
T ss_dssp CTTCCCCTTSCHHHHHHHHHHHHCCCCH-HHHHHHHHHTTCTTTTTSCGGGSCHHHHHHHHHHHHTTSCCSEEEEESSST
T ss_pred ecCcccCCCCCHHHHHHHHHHHcCCCHH-HHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEECccc
Confidence 776554443 5666554432111112 678899999999 68999999999999999998 99999999
Q ss_pred CCCHHHHHHHHH---Hhcc--cCcEEEEccCCCHHHHHHHHhccccccceEEEeecCCCC
Q 018394 154 HVDEKLCYQILH---EYKI--HNAEVLFREDATVDDLIDVIEGNRKYMKCVYVYNKIDVI 208 (356)
Q Consensus 154 ~LD~~~~~~il~---~l~~--~~~~i~~thd~~~~~~~~~i~~~~~~~p~i~v~NK~Dl~ 208 (356)
+||+....++++ .+.. +.++|++|||...... ....++++++.-+.
T Consensus 157 ~LD~~~~~~l~~~l~~l~~~~g~tii~vTHd~~~~~~---------~adri~vl~~G~i~ 207 (348)
T 3d31_A 157 ALDPRTQENAREMLSVLHKKNKLTVLHITHDQTEARI---------MADRIAVVMDGKLI 207 (348)
T ss_dssp TSCHHHHHHHHHHHHHHHHHTTCEEEEEESCHHHHHH---------HCSEEEEESSSCEE
T ss_pred cCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHH---------hCCEEEEEECCEEE
Confidence 999988555444 4432 4599999999754321 23667777766543
No 20
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=99.90 E-value=4.7e-24 Score=205.22 Aligned_cols=173 Identities=19% Similarity=0.227 Sum_probs=128.7
Q ss_pred CCCCeEEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCccccccccccccceEEEECCEeecccCccccccccccCcccc
Q 018394 8 AGEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRG 87 (356)
Q Consensus 8 ~~~s~~v~~~~g~~v~LvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~~D~pGl~~~~~~~~~~~ 87 (356)
.++||++.+ |++++|+|||||||||||++|+|...| ..|.|.++|.++.... . ....+++.
T Consensus 20 ~~vsl~i~~--Ge~~~llGpnGsGKSTLLr~iaGl~~p-----------~~G~I~i~g~~i~~~~--~----~~r~ig~v 80 (359)
T 2yyz_A 20 DGVSFEVKD--GEFVALLGPSGCGKTTTLLMLAGIYKP-----------TSGEIYFDDVLVNDIP--P----KYREVGMV 80 (359)
T ss_dssp EEEEEEECT--TCEEEEECSTTSSHHHHHHHHHTSSCC-----------SEEEEEETTEECTTSC--G----GGTTEEEE
T ss_pred eeeEEEEcC--CCEEEEEcCCCchHHHHHHHHHCCCCC-----------CccEEEECCEECCCCC--h----hhCcEEEE
Confidence 478999999 889999999999999999999999876 8999999999875332 1 12346666
Q ss_pred ccccccccc---hhHHHHHHhcCCh--HHHHHHHHHHHHHccC--ccccccCcccccceecccee---------eeecCC
Q 018394 88 RQVIAVSKS---SDIVLMVLDASKS--EGHRQILTKELEAVGL--RLNKRPPQIYFKKKKTGGIS---------FNSTLP 151 (356)
Q Consensus 88 ~~~~~~~~~---~d~i~~v~d~~~~--~~~~~~i~~~L~~~~i--~l~~~~~~lS~g~~qr~~ia---------l~~DEp 151 (356)
+|....+.. .+++.+....... .+..+++.+.|+.+++ .+++++.+||+||+||++|| +++|||
T Consensus 81 ~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSgGq~QRvalArAL~~~P~lLLLDEP 160 (359)
T 2yyz_A 81 FQNYALYPHMTVFENIAFPLRARRISKDEVEKRVVEIARKLLIDNLLDRKPTQLSGGQQQRVALARALVKQPKVLLFDEP 160 (359)
T ss_dssp CSSCCCCTTSCHHHHHHGGGSSSCSHHHHTTHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEEEST
T ss_pred ecCcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEECC
Confidence 776555544 4455443322221 1224568899999999 68999999999999999998 999999
Q ss_pred CCCCCHHHHHHHHH---Hhcc--cCcEEEEccCCCHHHHHHHHhccccccceEEEeecCCCC
Q 018394 152 LTHVDEKLCYQILH---EYKI--HNAEVLFREDATVDDLIDVIEGNRKYMKCVYVYNKIDVI 208 (356)
Q Consensus 152 ~~~LD~~~~~~il~---~l~~--~~~~i~~thd~~~~~~~~~i~~~~~~~p~i~v~NK~Dl~ 208 (356)
|++||+....++++ .+.. +.+++++|||.+.... ....++++++.-+.
T Consensus 161 ~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~~~~---------~adri~vl~~G~i~ 213 (359)
T 2yyz_A 161 LSNLDANLRMIMRAEIKHLQQELGITSVYVTHDQAEAMT---------MASRIAVFNQGKLV 213 (359)
T ss_dssp TTTSCHHHHHHHHHHHHHHHHHHCCEEEEEESCHHHHHH---------HCSEEEEEETTEEE
T ss_pred cccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHH---------hCCEEEEEECCEEE
Confidence 99999988555544 4432 5699999999754322 23667788776543
No 21
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=99.90 E-value=7.5e-24 Score=204.72 Aligned_cols=173 Identities=17% Similarity=0.210 Sum_probs=124.7
Q ss_pred CCCCeEEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCccccccccccccceEEEECCEeecccCccccccccccCcccc
Q 018394 8 AGEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRG 87 (356)
Q Consensus 8 ~~~s~~v~~~~g~~v~LvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~~D~pGl~~~~~~~~~~~ 87 (356)
.++||++.+ |++++|+|||||||||||++|+|...| ..|.|.++|.++... +. ....+++.
T Consensus 28 ~~vsl~i~~--Ge~~~llGpnGsGKSTLLr~iaGl~~p-----------~~G~I~i~g~~i~~~--~~----~~r~ig~v 88 (372)
T 1v43_A 28 NKLNLTIKD--GEFLVLLGPSGCGKTTTLRMIAGLEEP-----------TEGRIYFGDRDVTYL--PP----KDRNISMV 88 (372)
T ss_dssp EEEEEEECT--TCEEEEECCTTSSHHHHHHHHHTSSCC-----------SEEEEEETTEECTTS--CG----GGGTEEEE
T ss_pred eeeEEEECC--CCEEEEECCCCChHHHHHHHHHcCCCC-----------CceEEEECCEECCCC--Ch----hhCcEEEE
Confidence 478999999 889999999999999999999999877 899999999987532 21 12346666
Q ss_pred ccccccccc---hhHHHHHHhcC--ChHHHHHHHHHHHHHccC--ccccccCcccccceecccee---------eeecCC
Q 018394 88 RQVIAVSKS---SDIVLMVLDAS--KSEGHRQILTKELEAVGL--RLNKRPPQIYFKKKKTGGIS---------FNSTLP 151 (356)
Q Consensus 88 ~~~~~~~~~---~d~i~~v~d~~--~~~~~~~~i~~~L~~~~i--~l~~~~~~lS~g~~qr~~ia---------l~~DEp 151 (356)
+|....+.. .+++.+..... ......+++.+.|+.+++ .+++++.+||+||+||++|| +++|||
T Consensus 89 ~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSGGq~QRvalArAL~~~P~lLLLDEP 168 (372)
T 1v43_A 89 FQSYAVWPHMTVYENIAFPLKIKKFPKDEIDKRVRWAAELLQIEELLNRYPAQLSGGQRQRVAVARAIVVEPDVLLMDEP 168 (372)
T ss_dssp EC------CCCHHHHHHTTCC--CCCHHHHHHHHHHHHHHTTCGGGTTSCTTTCCSSCHHHHHHHHHHTTCCSEEEEEST
T ss_pred ecCcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCC
Confidence 776555544 34444322211 222334678899999999 68999999999999999998 999999
Q ss_pred CCCCCHHHHHHHHH---Hhcc--cCcEEEEccCCCHHHHHHHHhccccccceEEEeecCCCC
Q 018394 152 LTHVDEKLCYQILH---EYKI--HNAEVLFREDATVDDLIDVIEGNRKYMKCVYVYNKIDVI 208 (356)
Q Consensus 152 ~~~LD~~~~~~il~---~l~~--~~~~i~~thd~~~~~~~~~i~~~~~~~p~i~v~NK~Dl~ 208 (356)
|++||+....+++. .+.. +.++|++|||...... ....++++++.-+.
T Consensus 169 ~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~---------~adri~vl~~G~i~ 221 (372)
T 1v43_A 169 LSNLDAKLRVAMRAEIKKLQQKLKVTTIYVTHDQVEAMT---------MGDRIAVMNRGQLL 221 (372)
T ss_dssp TTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHH---------HCSEEEEEETTEEE
T ss_pred CccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHH---------hCCEEEEEECCEEE
Confidence 99999988555544 4432 4699999999754321 23667777766443
No 22
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=99.90 E-value=5.3e-24 Score=194.47 Aligned_cols=172 Identities=19% Similarity=0.206 Sum_probs=123.0
Q ss_pred CCCCeEEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCccccccccccccceEEEECCEeecccCccccccccccCcccc
Q 018394 8 AGEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRG 87 (356)
Q Consensus 8 ~~~s~~v~~~~g~~v~LvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~~D~pGl~~~~~~~~~~~ 87 (356)
.++||++.+ + +++|+||||||||||+++|+|...| ..|.|.++|.++.-. +. ....+++.
T Consensus 16 ~~isl~i~~-e--~~~liG~nGsGKSTLl~~l~Gl~~p-----------~~G~i~~~g~~~~~~--~~----~~~~i~~v 75 (240)
T 2onk_A 16 LNVDFEMGR-D--YCVLLGPTGAGKSVFLELIAGIVKP-----------DRGEVRLNGADITPL--PP----ERRGIGFV 75 (240)
T ss_dssp EEEEEEECS-S--EEEEECCTTSSHHHHHHHHHTSSCC-----------SEEEEEETTEECTTS--CT----TTSCCBCC
T ss_pred eeeEEEECC-E--EEEEECCCCCCHHHHHHHHhCCCCC-----------CceEEEECCEECCcC--ch----hhCcEEEE
Confidence 467888887 5 9999999999999999999999876 799999999887421 11 12345555
Q ss_pred ccccccccc---hhHHHHHHhcCChHHHHHHHHHHHHHccC--ccccccCcccccceecccee---------eeecCCCC
Q 018394 88 RQVIAVSKS---SDIVLMVLDASKSEGHRQILTKELEAVGL--RLNKRPPQIYFKKKKTGGIS---------FNSTLPLT 153 (356)
Q Consensus 88 ~~~~~~~~~---~d~i~~v~d~~~~~~~~~~i~~~L~~~~i--~l~~~~~~lS~g~~qr~~ia---------l~~DEp~~ 153 (356)
.|....+.. .+.+.+...........+.+.+.|+.+++ ..++++.+||+||+||++|| +++||||+
T Consensus 76 ~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~lllLDEPts 155 (240)
T 2onk_A 76 PQDYALFPHLSVYRNIAYGLRNVERVERDRRVREMAEKLGIAHLLDRKPARLSGGERQRVALARALVIQPRLLLLDEPLS 155 (240)
T ss_dssp CSSCCCCTTSCHHHHHHTTCTTSCHHHHHHHHHHHHHTTTCTTTTTCCGGGSCHHHHHHHHHHHHHTTCCSSBEEESTTS
T ss_pred cCCCccCCCCcHHHHHHHHHHHcCCchHHHHHHHHHHHcCCHHHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcc
Confidence 565444433 34443322111212234568889999999 67899999999999999998 99999999
Q ss_pred CCCHHHHHHH---HHHhcc--cCcEEEEccCCCHHHHHHHHhccccccceEEEeecCCCC
Q 018394 154 HVDEKLCYQI---LHEYKI--HNAEVLFREDATVDDLIDVIEGNRKYMKCVYVYNKIDVI 208 (356)
Q Consensus 154 ~LD~~~~~~i---l~~l~~--~~~~i~~thd~~~~~~~~~i~~~~~~~p~i~v~NK~Dl~ 208 (356)
+||+.....+ +..+.. +.+++++|||...... .+..++++++.-+.
T Consensus 156 ~LD~~~~~~~~~~l~~l~~~~g~tvi~vtHd~~~~~~---------~~d~i~~l~~G~i~ 206 (240)
T 2onk_A 156 AVDLKTKGVLMEELRFVQREFDVPILHVTHDLIEAAM---------LADEVAVMLNGRIV 206 (240)
T ss_dssp SCCHHHHHHHHHHHHHHHHHHTCCEEEEESCHHHHHH---------HCSEEEEEETTEEE
T ss_pred cCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHH---------hCCEEEEEECCEEE
Confidence 9999885554 444432 5699999999754321 23667777765443
No 23
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=99.90 E-value=3.7e-24 Score=198.37 Aligned_cols=174 Identities=18% Similarity=0.168 Sum_probs=124.6
Q ss_pred CCCCeEEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCccccccccccccceEEEECCEeecccCccccccccccCcccc
Q 018394 8 AGEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRG 87 (356)
Q Consensus 8 ~~~s~~v~~~~g~~v~LvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~~D~pGl~~~~~~~~~~~ 87 (356)
+++||++.+ |++++|+||||||||||+++|+|...| ..|.|.++|.++.-.+...+. ..+++.
T Consensus 28 ~~vsl~i~~--Ge~~~liG~nGsGKSTLl~~l~Gl~~p-----------~~G~I~~~g~~~~~~~~~~~~----~~i~~v 90 (266)
T 4g1u_C 28 NDVSLHIAS--GEMVAIIGPNGAGKSTLLRLLTGYLSP-----------SHGECHLLGQNLNSWQPKALA----RTRAVM 90 (266)
T ss_dssp EEEEEEEET--TCEEEEECCTTSCHHHHHHHHTSSSCC-----------SSCEEEETTEETTTSCHHHHH----HHEEEE
T ss_pred EeeEEEEcC--CCEEEEECCCCCcHHHHHHHHhcCCCC-----------CCcEEEECCEECCcCCHHHHh----heEEEE
Confidence 578999999 889999999999999999999999877 799999999987644322111 122333
Q ss_pred ccccccc---cchhHHHHHHhcCChHHHHHHHHHHHHHccC--ccccccCcccccceecccee---------------ee
Q 018394 88 RQVIAVS---KSSDIVLMVLDASKSEGHRQILTKELEAVGL--RLNKRPPQIYFKKKKTGGIS---------------FN 147 (356)
Q Consensus 88 ~~~~~~~---~~~d~i~~v~d~~~~~~~~~~i~~~L~~~~i--~l~~~~~~lS~g~~qr~~ia---------------l~ 147 (356)
.|....+ ...+++.+...........+.+.+.|+.+++ ..++++.+||+||+||++|| ++
T Consensus 91 ~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~QRv~iAraL~~~~~~~~~p~lLl 170 (266)
T 4g1u_C 91 RQYSELAFPFSVSEVIQMGRAPYGGSQDRQALQQVMAQTDCLALAQRDYRVLSGGEQQRVQLARVLAQLWQPQPTPRWLF 170 (266)
T ss_dssp CSCCCCCSCCBHHHHHHGGGTTSCSTTHHHHHHHHHHHTTCSTTTTSBGGGCCHHHHHHHHHHHHHHHTCCSSCCCEEEE
T ss_pred ecCCccCCCCCHHHHHHhhhhhcCcHHHHHHHHHHHHHcCChhHhcCCcccCCHHHHHHHHHHHHHhcccccCCCCCEEE
Confidence 4433222 2244444332222223345678899999999 67889999999999999876 57
Q ss_pred ecCCCCCCCHHHHHHHH---HHhcc-cC-cEEEEccCCCHHHHHHHHhccccccceEEEeecCCC
Q 018394 148 STLPLTHVDEKLCYQIL---HEYKI-HN-AEVLFREDATVDDLIDVIEGNRKYMKCVYVYNKIDV 207 (356)
Q Consensus 148 ~DEp~~~LD~~~~~~il---~~l~~-~~-~~i~~thd~~~~~~~~~i~~~~~~~p~i~v~NK~Dl 207 (356)
+||||++||+....+++ +.+.. .+ +++++|||.+.... ++..++++++.-+
T Consensus 171 lDEPts~LD~~~~~~i~~~l~~l~~~~~~tvi~vtHdl~~~~~---------~~d~v~vl~~G~i 226 (266)
T 4g1u_C 171 LDEPTSALDLYHQQHTLRLLRQLTRQEPLAVCCVLHDLNLAAL---------YADRIMLLAQGKL 226 (266)
T ss_dssp ECCCCSSCCHHHHHHHHHHHHHHHHHSSEEEEEECSCHHHHHH---------HCSEEEEEETTEE
T ss_pred EeCccccCCHHHHHHHHHHHHHHHHcCCCEEEEEEcCHHHHHH---------hCCEEEEEECCEE
Confidence 89999999998855544 44433 33 89999999765332 2477888876544
No 24
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=99.90 E-value=4.9e-24 Score=197.20 Aligned_cols=177 Identities=17% Similarity=0.154 Sum_probs=125.0
Q ss_pred CCCCeEEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCccccccccccccceEEEECCEeecc----------cCccccc
Q 018394 8 AGEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQL----------LDLPGII 77 (356)
Q Consensus 8 ~~~s~~v~~~~g~~v~LvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~----------~D~pGl~ 77 (356)
.++||++.+ |++++|+||||||||||+++|+|...| ..|.|.++|.++.. .+.....
T Consensus 23 ~~vsl~i~~--Ge~~~liG~nGsGKSTLlk~l~Gl~~p-----------~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~ 89 (262)
T 1b0u_A 23 KGVSLQARA--GDVISIIGSSGSGKSTFLRCINFLEKP-----------SEGAIIVNGQNINLVRDKDGQLKVADKNQLR 89 (262)
T ss_dssp EEEEEEECT--TCEEEEECCTTSSHHHHHHHHTTSSCC-----------SEEEEEETTEECCEEECTTSSEEESCHHHHH
T ss_pred EeeEEEEcC--CCEEEEECCCCCCHHHHHHHHhcCCCC-----------CCcEEEECCEEccccccccccccccChhhHH
Confidence 478999999 889999999999999999999999876 79999999988641 1111100
Q ss_pred cccccCcccccccccccc---chhHHHHHH-hcC--ChHHHHHHHHHHHHHccC--c-cccccCcccccceecccee---
Q 018394 78 EGASEGKGRGRQVIAVSK---SSDIVLMVL-DAS--KSEGHRQILTKELEAVGL--R-LNKRPPQIYFKKKKTGGIS--- 145 (356)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~---~~d~i~~v~-d~~--~~~~~~~~i~~~L~~~~i--~-l~~~~~~lS~g~~qr~~ia--- 145 (356)
.....+++.+|....+. ..+.+.+.. ... ......+.+.++|+.+++ . +++++.+||+||+||++||
T Consensus 90 -~~~~~i~~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSgGq~qRv~lAraL 168 (262)
T 1b0u_A 90 -LLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKHDARERALKYLAKVGIDERAQGKYPVHLSGGQQQRVSIARAL 168 (262)
T ss_dssp -HHHHHEEEECSSCCCCTTSCHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTCCHHHHTSCGGGSCHHHHHHHHHHHHH
T ss_pred -HHhcceEEEecCcccCCCCcHHHHHHhhHHHhcCCCHHHHHHHHHHHHHHcCCCchhhcCCcccCCHHHHHHHHHHHHH
Confidence 01123445555443333 345554432 221 222334568889999999 5 7999999999999999998
Q ss_pred ------eeecCCCCCCCHHHHHHH---HHHhcc-cCcEEEEccCCCHHHHHHHHhccccccceEEEeecCCC
Q 018394 146 ------FNSTLPLTHVDEKLCYQI---LHEYKI-HNAEVLFREDATVDDLIDVIEGNRKYMKCVYVYNKIDV 207 (356)
Q Consensus 146 ------l~~DEp~~~LD~~~~~~i---l~~l~~-~~~~i~~thd~~~~~~~~~i~~~~~~~p~i~v~NK~Dl 207 (356)
+++||||++||+.....+ ++.+.. +.++|++|||.+.... .+..++++++.-+
T Consensus 169 ~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~~~~~~---------~~d~v~~l~~G~i 231 (262)
T 1b0u_A 169 AMEPDVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFARH---------VSSHVIFLHQGKI 231 (262)
T ss_dssp HTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCCEEEECSCHHHHHH---------HCSEEEEEETTEE
T ss_pred hcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHH---------hCCEEEEEECCEE
Confidence 999999999999885554 444433 4599999999654321 2366777776544
No 25
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=99.90 E-value=9.4e-24 Score=192.86 Aligned_cols=174 Identities=18% Similarity=0.139 Sum_probs=122.7
Q ss_pred CCCCeEEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCccccccccccccceEEEECCEeecccCccccccccccCcccc
Q 018394 8 AGEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRG 87 (356)
Q Consensus 8 ~~~s~~v~~~~g~~v~LvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~~D~pGl~~~~~~~~~~~ 87 (356)
.++||++.+ |++++|+|||||||||||++|+|...| ..|.|.++|.++...+.... ....+++.
T Consensus 23 ~~vsl~i~~--Ge~~~l~G~nGsGKSTLl~~l~Gl~~p-----------~~G~i~~~g~~~~~~~~~~~---~~~~i~~v 86 (240)
T 1ji0_A 23 KGIDLKVPR--GQIVTLIGANGAGKTTTLSAIAGLVRA-----------QKGKIIFNGQDITNKPAHVI---NRMGIALV 86 (240)
T ss_dssp EEEEEEEET--TCEEEEECSTTSSHHHHHHHHTTSSCC-----------SEEEEEETTEECTTCCHHHH---HHTTEEEE
T ss_pred eeeEEEEcC--CCEEEEECCCCCCHHHHHHHHhCCCCC-----------CCceEEECCEECCCCCHHHH---HhCCEEEE
Confidence 478999999 889999999999999999999999876 79999999998753322111 12234555
Q ss_pred ccccccccc---hhHHHHHHhc-CChHHHHHHHHHHHHHcc-C--ccccccCcccccceecccee---------eeecCC
Q 018394 88 RQVIAVSKS---SDIVLMVLDA-SKSEGHRQILTKELEAVG-L--RLNKRPPQIYFKKKKTGGIS---------FNSTLP 151 (356)
Q Consensus 88 ~~~~~~~~~---~d~i~~v~d~-~~~~~~~~~i~~~L~~~~-i--~l~~~~~~lS~g~~qr~~ia---------l~~DEp 151 (356)
.|....+.. .+.+.+.... .......+.+.+.++.++ + .+++++.+||+||+||++|| +++|||
T Consensus 87 ~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~LSgGq~qrv~lAraL~~~p~lllLDEP 166 (240)
T 1ji0_A 87 PEGRRIFPELTVYENLMMGAYNRKDKEGIKRDLEWIFSLFPRLKERLKQLGGTLSGGEQQMLAIGRALMSRPKLLMMDEP 166 (240)
T ss_dssp CSSCCCCTTSBHHHHHHGGGTTCCCSSHHHHHHHHHHHHCHHHHTTTTSBSSSSCHHHHHHHHHHHHHTTCCSEEEEECT
T ss_pred ecCCccCCCCcHHHHHHHhhhcCCCHHHHHHHHHHHHHHcccHhhHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEcCC
Confidence 555444433 3444332111 112233456778888884 8 67889999999999999998 999999
Q ss_pred CCCCCHHHHHHH---HHHhc-ccCcEEEEccCCCHHHHHHHHhccccccceEEEeecCC
Q 018394 152 LTHVDEKLCYQI---LHEYK-IHNAEVLFREDATVDDLIDVIEGNRKYMKCVYVYNKID 206 (356)
Q Consensus 152 ~~~LD~~~~~~i---l~~l~-~~~~~i~~thd~~~~~~~~~i~~~~~~~p~i~v~NK~D 206 (356)
|++||+.....+ ++.+. .+.+++++|||.+.... .+..++++++.-
T Consensus 167 ts~LD~~~~~~l~~~l~~~~~~g~tvi~vtHd~~~~~~---------~~d~v~~l~~G~ 216 (240)
T 1ji0_A 167 SLGLAPILVSEVFEVIQKINQEGTTILLVEQNALGALK---------VAHYGYVLETGQ 216 (240)
T ss_dssp TTTCCHHHHHHHHHHHHHHHHTTCCEEEEESCHHHHHH---------HCSEEEEEETTE
T ss_pred cccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHH---------hCCEEEEEECCE
Confidence 999999885554 44443 34599999999643221 235667776543
No 26
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=99.90 E-value=5.4e-24 Score=204.68 Aligned_cols=175 Identities=14% Similarity=0.186 Sum_probs=129.0
Q ss_pred CCCCeEEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCccccccccccccceEEEECCEeecccC---ccccccccccCc
Q 018394 8 AGEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLD---LPGIIEGASEGK 84 (356)
Q Consensus 8 ~~~s~~v~~~~g~~v~LvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~~D---~pGl~~~~~~~~ 84 (356)
.++||++.+ |++++|+|||||||||||++|+|...| ..|.|.++|.++.-.. .+. ....+
T Consensus 22 ~~vsl~i~~--Ge~~~llGpnGsGKSTLLr~iaGl~~p-----------~~G~I~i~g~~i~~~~~~~~~~----~~r~i 84 (353)
T 1oxx_K 22 DNVNINIEN--GERFGILGPSGAGKTTFMRIIAGLDVP-----------STGELYFDDRLVASNGKLIVPP----EDRKI 84 (353)
T ss_dssp EEEEEEECT--TCEEEEECSCHHHHHHHHHHHHTSSCC-----------SEEEEEETTEEEEETTEESSCG----GGSCE
T ss_pred eceEEEECC--CCEEEEECCCCCcHHHHHHHHhCCCCC-----------CceEEEECCEECcccccccCCh----hhCCE
Confidence 378999998 889999999999999999999999877 8999999999875311 221 22346
Q ss_pred cccccccccccc---hhHHHHHHhcC--ChHHHHHHHHHHHHHccC--ccccccCcccccceecccee---------eee
Q 018394 85 GRGRQVIAVSKS---SDIVLMVLDAS--KSEGHRQILTKELEAVGL--RLNKRPPQIYFKKKKTGGIS---------FNS 148 (356)
Q Consensus 85 ~~~~~~~~~~~~---~d~i~~v~d~~--~~~~~~~~i~~~L~~~~i--~l~~~~~~lS~g~~qr~~ia---------l~~ 148 (356)
++.+|....+.. .+++.+..... ......+++.+.|+.+++ .+++++.+||+||+||++|| +++
T Consensus 85 g~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~LSGGq~QRvalAraL~~~P~lLLL 164 (353)
T 1oxx_K 85 GMVFQTWALYPNLTAFENIAFPLTNMKMSKEEIRKRVEEVAKILDIHHVLNHFPRELSGAQQQRVALARALVKDPSLLLL 164 (353)
T ss_dssp EEEETTSCCCTTSCHHHHHHGGGTTSSCCHHHHHHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEE
T ss_pred EEEeCCCccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHhCCCEEEE
Confidence 667776555544 44554433222 222335678899999999 68999999999999999998 999
Q ss_pred cCCCCCCCHHHHHHH---HHHhcc--cCcEEEEccCCCHHHHHHHHhccccccceEEEeecCCCC
Q 018394 149 TLPLTHVDEKLCYQI---LHEYKI--HNAEVLFREDATVDDLIDVIEGNRKYMKCVYVYNKIDVI 208 (356)
Q Consensus 149 DEp~~~LD~~~~~~i---l~~l~~--~~~~i~~thd~~~~~~~~~i~~~~~~~p~i~v~NK~Dl~ 208 (356)
||||++||+....++ |+.+.. +.++|++|||.+.... ....++++++.-+.
T Consensus 165 DEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~~~~---------~adri~vl~~G~i~ 220 (353)
T 1oxx_K 165 DEPFSNLDARMRDSARALVKEVQSRLGVTLLVVSHDPADIFA---------IADRVGVLVKGKLV 220 (353)
T ss_dssp ESTTTTSCGGGHHHHHHHHHHHHHHHCCEEEEEESCHHHHHH---------HCSEEEEEETTEEE
T ss_pred ECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHH---------hCCEEEEEECCEEE
Confidence 999999999875544 444432 4699999999754322 23667788766443
No 27
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=99.90 E-value=1.4e-23 Score=193.49 Aligned_cols=173 Identities=13% Similarity=0.104 Sum_probs=124.4
Q ss_pred CCCCeEEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCccccccccccccceEEEECCEeecccCccccccccccCcccc
Q 018394 8 AGEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRG 87 (356)
Q Consensus 8 ~~~s~~v~~~~g~~v~LvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~~D~pGl~~~~~~~~~~~ 87 (356)
.++||++.+ |++++|+|||||||||||++|+|...| .+|.|.++|.++.- +.. .....+++.
T Consensus 32 ~~vsl~i~~--Gei~~l~G~NGsGKSTLlk~l~Gl~~p-----------~~G~I~~~g~~~~~-~~~----~~~~~i~~v 93 (256)
T 1vpl_A 32 KGISFEIEE--GEIFGLIGPNGAGKTTTLRIISTLIKP-----------SSGIVTVFGKNVVE-EPH----EVRKLISYL 93 (256)
T ss_dssp EEEEEEECT--TCEEEEECCTTSSHHHHHHHHTTSSCC-----------SEEEEEETTEETTT-CHH----HHHTTEEEE
T ss_pred EeeEEEEcC--CcEEEEECCCCCCHHHHHHHHhcCCCC-----------CceEEEECCEECCc-cHH----HHhhcEEEE
Confidence 478999998 889999999999999999999999876 79999999988642 111 112234555
Q ss_pred cccccccc---chhHHHHHHhc--CChHHHHHHHHHHHHHccC--ccccccCcccccceecccee---------eeecCC
Q 018394 88 RQVIAVSK---SSDIVLMVLDA--SKSEGHRQILTKELEAVGL--RLNKRPPQIYFKKKKTGGIS---------FNSTLP 151 (356)
Q Consensus 88 ~~~~~~~~---~~d~i~~v~d~--~~~~~~~~~i~~~L~~~~i--~l~~~~~~lS~g~~qr~~ia---------l~~DEp 151 (356)
.|....+. ..+.+.+.... .......+.+.++|+.+++ .+++++.+||+||+||++|| +++|||
T Consensus 94 ~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~qRv~lAraL~~~p~lllLDEP 173 (256)
T 1vpl_A 94 PEEAGAYRNMQGIEYLRFVAGFYASSSSEIEEMVERATEIAGLGEKIKDRVSTYSKGMVRKLLIARALMVNPRLAILDEP 173 (256)
T ss_dssp CTTCCCCTTSBHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCGGGGGSBGGGCCHHHHHHHHHHHHHTTCCSEEEEEST
T ss_pred cCCCCCCCCCcHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCchHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCC
Confidence 55443333 34555443221 1222234567889999999 67899999999999999998 999999
Q ss_pred CCCCCHHHHHHH---HHHhcc-cCcEEEEccCCCHHHHHHHHhccccccceEEEeecCCC
Q 018394 152 LTHVDEKLCYQI---LHEYKI-HNAEVLFREDATVDDLIDVIEGNRKYMKCVYVYNKIDV 207 (356)
Q Consensus 152 ~~~LD~~~~~~i---l~~l~~-~~~~i~~thd~~~~~~~~~i~~~~~~~p~i~v~NK~Dl 207 (356)
|++||+.....+ |+.+.. +.++|++|||.+... ..+..++++++.-+
T Consensus 174 ts~LD~~~~~~l~~~l~~l~~~g~tiiivtHd~~~~~---------~~~d~v~~l~~G~i 224 (256)
T 1vpl_A 174 TSGLDVLNAREVRKILKQASQEGLTILVSSHNMLEVE---------FLCDRIALIHNGTI 224 (256)
T ss_dssp TTTCCHHHHHHHHHHHHHHHHTTCEEEEEECCHHHHT---------TTCSEEEEEETTEE
T ss_pred ccccCHHHHHHHHHHHHHHHhCCCEEEEEcCCHHHHH---------HHCCEEEEEECCEE
Confidence 999999885544 444443 458999999965422 13466777776544
No 28
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=99.89 E-value=2e-23 Score=187.41 Aligned_cols=152 Identities=16% Similarity=0.155 Sum_probs=113.3
Q ss_pred CCCCeEEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCccccccccccccceEEEECCEeecccCccccccccccCcccc
Q 018394 8 AGEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRG 87 (356)
Q Consensus 8 ~~~s~~v~~~~g~~v~LvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~~D~pGl~~~~~~~~~~~ 87 (356)
.++||++.+ |++++|+|||||||||||++|+|...| ..|.|.++|.++. + . ...+++.
T Consensus 26 ~~vsl~i~~--Ge~~~iiG~NGsGKSTLlk~l~Gl~~p-----------~~G~I~~~g~~~~--~---~----~~~i~~v 83 (214)
T 1sgw_A 26 ERITMTIEK--GNVVNFHGPNGIGKTTLLKTISTYLKP-----------LKGEIIYNGVPIT--K---V----KGKIFFL 83 (214)
T ss_dssp EEEEEEEET--TCCEEEECCTTSSHHHHHHHHTTSSCC-----------SEEEEEETTEEGG--G---G----GGGEEEE
T ss_pred eeeEEEEcC--CCEEEEECCCCCCHHHHHHHHhcCCCC-----------CCeEEEECCEEhh--h---h----cCcEEEE
Confidence 478999999 889999999999999999999999876 7999999998764 1 1 1233444
Q ss_pred cccccccc---chhHHHHHHhcCC-hHHHHHHHHHHHHHccC--ccccccCcccccceecccee---------eeecCCC
Q 018394 88 RQVIAVSK---SSDIVLMVLDASK-SEGHRQILTKELEAVGL--RLNKRPPQIYFKKKKTGGIS---------FNSTLPL 152 (356)
Q Consensus 88 ~~~~~~~~---~~d~i~~v~d~~~-~~~~~~~i~~~L~~~~i--~l~~~~~~lS~g~~qr~~ia---------l~~DEp~ 152 (356)
.|....+. ..+.+.+...... ... .+.+.++|+.+++ . ++++.+||+||+||++|| +++||||
T Consensus 84 ~q~~~~~~~~tv~enl~~~~~~~~~~~~-~~~~~~~l~~~gl~~~-~~~~~~LSgGqkqrv~laraL~~~p~lllLDEPt 161 (214)
T 1sgw_A 84 PEEIIVPRKISVEDYLKAVASLYGVKVN-KNEIMDALESVEVLDL-KKKLGELSQGTIRRVQLASTLLVNAEIYVLDDPV 161 (214)
T ss_dssp CSSCCCCTTSBHHHHHHHHHHHTTCCCC-HHHHHHHHHHTTCCCT-TSBGGGSCHHHHHHHHHHHHTTSCCSEEEEESTT
T ss_pred eCCCcCCCCCCHHHHHHHHHHhcCCchH-HHHHHHHHHHcCCCcC-CCChhhCCHHHHHHHHHHHHHHhCCCEEEEECCC
Confidence 44433333 3455544332211 112 4567888999998 5 888999999999999998 9999999
Q ss_pred CCCCHHHHHH---HHHHhc-ccCcEEEEccCCCHH
Q 018394 153 THVDEKLCYQ---ILHEYK-IHNAEVLFREDATVD 183 (356)
Q Consensus 153 ~~LD~~~~~~---il~~l~-~~~~~i~~thd~~~~ 183 (356)
++||+..... +++.+. .+.+++++|||....
T Consensus 162 s~LD~~~~~~l~~~l~~~~~~g~tiiivtHd~~~~ 196 (214)
T 1sgw_A 162 VAIDEDSKHKVLKSILEILKEKGIVIISSREELSY 196 (214)
T ss_dssp TTSCTTTHHHHHHHHHHHHHHHSEEEEEESSCCTT
T ss_pred cCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHH
Confidence 9999987544 444444 346999999997643
No 29
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=99.89 E-value=4.2e-23 Score=192.52 Aligned_cols=172 Identities=13% Similarity=0.074 Sum_probs=121.5
Q ss_pred CCCCeEEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCccccccccccccceEEEECCEeec--ccCccccccccccCcc
Q 018394 8 AGEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQ--LLDLPGIIEGASEGKG 85 (356)
Q Consensus 8 ~~~s~~v~~~~g~~v~LvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~--~~D~pGl~~~~~~~~~ 85 (356)
.++||++.+ |++++|+|||||||||||++|+|...| ..|.|.++|.++. ..+... ....++
T Consensus 38 ~~isl~i~~--Ge~~~liG~NGsGKSTLlk~l~Gl~~p-----------~~G~I~~~g~~~~~~~~~~~~----~~~~i~ 100 (279)
T 2ihy_A 38 KKISWQIAK--GDKWILYGLNGAGKTTLLNILNAYEPA-----------TSGTVNLFGKMPGKVGYSAET----VRQHIG 100 (279)
T ss_dssp EEEEEEEET--TCEEEEECCTTSSHHHHHHHHTTSSCC-----------SEEEEEETTBCCC---CCHHH----HHTTEE
T ss_pred EeeeEEEcC--CCEEEEECCCCCcHHHHHHHHhCCCCC-----------CCeEEEECCEEcccccCCHHH----HcCcEE
Confidence 478999999 889999999999999999999999877 7999999998764 222111 122345
Q ss_pred cccccccc-c----cchhHHHHHHhc------CChHHHHHHHHHHHHHccC--ccccccCcccccceecccee-------
Q 018394 86 RGRQVIAV-S----KSSDIVLMVLDA------SKSEGHRQILTKELEAVGL--RLNKRPPQIYFKKKKTGGIS------- 145 (356)
Q Consensus 86 ~~~~~~~~-~----~~~d~i~~v~d~------~~~~~~~~~i~~~L~~~~i--~l~~~~~~lS~g~~qr~~ia------- 145 (356)
+..|.... + ...+.+.+.... .......+.+.+.|+.+++ .+++++.+||+||+||++||
T Consensus 101 ~v~Q~~~~~~~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqkqRv~lAraL~~~p 180 (279)
T 2ihy_A 101 FVSHSLLEKFQEGERVIDVVISGAFKSIGVYQDIDDEIRNEAHQLLKLVGMSAKAQQYIGYLSTGEKQRVMIARALMGQP 180 (279)
T ss_dssp EECHHHHTTSCTTSBHHHHHHTTC---------CCHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHHHHHHHHHTCC
T ss_pred EEEcCcccccCCCCCHHHHHHhhhhhccccccCCcHHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHhCCC
Confidence 55554321 1 234444331100 0122334567889999999 67899999999999999998
Q ss_pred --eeecCCCCCCCHHHHHHHHH---Hhcc-cCcE--EEEccCCCHHHHHHHHhccccccceEEEeecC
Q 018394 146 --FNSTLPLTHVDEKLCYQILH---EYKI-HNAE--VLFREDATVDDLIDVIEGNRKYMKCVYVYNKI 205 (356)
Q Consensus 146 --l~~DEp~~~LD~~~~~~il~---~l~~-~~~~--i~~thd~~~~~~~~~i~~~~~~~p~i~v~NK~ 205 (356)
+++||||++||+.....+++ .+.. +.++ |++|||..... ..+..++++++.
T Consensus 181 ~lLlLDEPts~LD~~~~~~l~~~l~~l~~~g~tv~~iivtHd~~~~~---------~~~d~v~~l~~G 239 (279)
T 2ihy_A 181 QVLILDEPAAGLDFIARESLLSILDSLSDSYPTLAMIYVTHFIEEIT---------ANFSKILLLKDG 239 (279)
T ss_dssp SEEEEESTTTTCCHHHHHHHHHHHHHHHHHCTTCEEEEEESCGGGCC---------TTCCEEEEEETT
T ss_pred CEEEEeCCccccCHHHHHHHHHHHHHHHHCCCEEEEEEEecCHHHHH---------HhCCEEEEEECC
Confidence 99999999999988555444 4433 4589 99999975421 134667777654
No 30
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=99.88 E-value=3.2e-23 Score=190.16 Aligned_cols=171 Identities=12% Similarity=0.075 Sum_probs=115.9
Q ss_pred CCCCeEEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCccccccccccccceEEEECCEeecccCccccccccccCcccc
Q 018394 8 AGEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRG 87 (356)
Q Consensus 8 ~~~s~~v~~~~g~~v~LvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~~D~pGl~~~~~~~~~~~ 87 (356)
.++||++.+ |++++|+|||||||||||++|+|...| ..|.|.++|.++.-.+...+ ...+++.
T Consensus 26 ~~vsl~i~~--Ge~~~i~G~nGsGKSTLl~~l~Gl~~p-----------~~G~I~i~g~~~~~~~~~~~----~~~i~~v 88 (247)
T 2ff7_A 26 DNINLSIKQ--GEVIGIVGRSGSGKSTLTKLIQRFYIP-----------ENGQVLIDGHDLALADPNWL----RRQVGVV 88 (247)
T ss_dssp EEEEEEEET--TCEEEEECSTTSSHHHHHHHHTTSSCC-----------SEEEEEETTEETTTSCHHHH----HHHEEEE
T ss_pred eeeEEEEcC--CCEEEEECCCCCCHHHHHHHHhcCCCC-----------CCcEEEECCEEhhhCCHHHH----HhcEEEE
Confidence 578999999 889999999999999999999999876 79999999998754332211 1223444
Q ss_pred ccccccccchhHHHHHHhcCChHHHHHHHHHHHHHccC--cc-----------ccccCcccccceecccee---------
Q 018394 88 RQVIAVSKSSDIVLMVLDASKSEGHRQILTKELEAVGL--RL-----------NKRPPQIYFKKKKTGGIS--------- 145 (356)
Q Consensus 88 ~~~~~~~~~~d~i~~v~d~~~~~~~~~~i~~~L~~~~i--~l-----------~~~~~~lS~g~~qr~~ia--------- 145 (356)
.|....+.. .+...+.-... ....+.+.+.++.+++ .+ ++++.+||+||+||++||
T Consensus 89 ~Q~~~l~~~-tv~enl~~~~~-~~~~~~~~~~l~~~~l~~~~~~~~~gl~~~~~~~~~~LSgGq~qRv~iAraL~~~p~l 166 (247)
T 2ff7_A 89 LQDNVLLNR-SIIDNISLANP-GMSVEKVIYAAKLAGAHDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKI 166 (247)
T ss_dssp CSSCCCTTS-BHHHHHTTTCT-TCCHHHHHHHHHHHTCHHHHHTSTTGGGCBCSTTTTCCCHHHHHHHHHHHHHTTCCSE
T ss_pred eCCCccccc-cHHHHHhccCC-CCCHHHHHHHHHHhChHHHHHhCcchhhhhhhCCCCCCCHHHHHHHHHHHHHhcCCCE
Confidence 554333321 22222211111 1112345566666666 22 345579999999999998
Q ss_pred eeecCCCCCCCHHHHHHH---HHHhcccCcEEEEccCCCHHHHHHHHhccccccceEEEeecCCC
Q 018394 146 FNSTLPLTHVDEKLCYQI---LHEYKIHNAEVLFREDATVDDLIDVIEGNRKYMKCVYVYNKIDV 207 (356)
Q Consensus 146 l~~DEp~~~LD~~~~~~i---l~~l~~~~~~i~~thd~~~~~~~~~i~~~~~~~p~i~v~NK~Dl 207 (356)
+++||||++||+.....+ ++.+..+.++|++||+.+... .+..++++++.-+
T Consensus 167 llLDEPts~LD~~~~~~i~~~l~~~~~g~tviivtH~~~~~~----------~~d~v~~l~~G~i 221 (247)
T 2ff7_A 167 LIFDEATSALDYESEHVIMRNMHKICKGRTVIIIAHRLSTVK----------NADRIIVMEKGKI 221 (247)
T ss_dssp EEECCCCSCCCHHHHHHHHHHHHHHHTTSEEEEECSSGGGGT----------TSSEEEEEETTEE
T ss_pred EEEeCCcccCCHHHHHHHHHHHHHHcCCCEEEEEeCCHHHHH----------hCCEEEEEECCEE
Confidence 999999999999885544 444444569999999976432 1466777776544
No 31
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=99.88 E-value=4.7e-23 Score=189.17 Aligned_cols=172 Identities=15% Similarity=0.111 Sum_probs=119.7
Q ss_pred CCCCeEEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCccccccccccccceEEEECCEeecccCccccccccccCcccc
Q 018394 8 AGEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRG 87 (356)
Q Consensus 8 ~~~s~~v~~~~g~~v~LvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~~D~pGl~~~~~~~~~~~ 87 (356)
.++||++.+ |++++|+|||||||||||++|+|...| . |.|.++|.++.-.+...+ ...+++.
T Consensus 17 ~~vsl~i~~--Ge~~~liG~NGsGKSTLlk~l~Gl~~p-----------~-G~i~~~g~~~~~~~~~~~----~~~i~~v 78 (249)
T 2qi9_C 17 GPLSGEVRA--GEILHLVGPNGAGKSTLLARMAGMTSG-----------K-GSIQFAGQPLEAWSATKL----ALHRAYL 78 (249)
T ss_dssp EEEEEEEET--TCEEEEECCTTSSHHHHHHHHTTSSCC-----------E-EEEEETTEEGGGSCHHHH----HHHEEEE
T ss_pred eeeEEEEcC--CCEEEEECCCCCcHHHHHHHHhCCCCC-----------C-eEEEECCEECCcCCHHHH----hceEEEE
Confidence 468999999 889999999999999999999999877 8 999999998754332211 1123444
Q ss_pred ccccccccchhHHHHHHhcCChHHHHHHHHHHHHHccC--ccccccCcccccceecccee----------------eeec
Q 018394 88 RQVIAVSKSSDIVLMVLDASKSEGHRQILTKELEAVGL--RLNKRPPQIYFKKKKTGGIS----------------FNST 149 (356)
Q Consensus 88 ~~~~~~~~~~d~i~~v~d~~~~~~~~~~i~~~L~~~~i--~l~~~~~~lS~g~~qr~~ia----------------l~~D 149 (356)
.|....+....+...+.-........+.+.+.|+.+++ .+++++.+||+||+||++|| +++|
T Consensus 79 ~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~lAraL~~~p~~~~~~~~lllLD 158 (249)
T 2qi9_C 79 SQQQTPPFATPVWHYLTLHQHDKTRTELLNDVAGALALDDKLGRSTNQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLD 158 (249)
T ss_dssp CSCCCCCTTCBHHHHHHTTCSSTTCHHHHHHHHHHTTCGGGTTSBGGGCCHHHHHHHHHHHHHHHHCTTTCTTCCEEEES
T ss_pred CCCCccCCCCcHHHHHHHhhccCCcHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHHcCCCcCCCCCeEEEEE
Confidence 44433333222222222111100014567889999999 67889999999999999987 6789
Q ss_pred CCCCCCCHHHHHHH---HHHhc-ccCcEEEEccCCCHHHHHHHHhccccccceEEEeecCC
Q 018394 150 LPLTHVDEKLCYQI---LHEYK-IHNAEVLFREDATVDDLIDVIEGNRKYMKCVYVYNKID 206 (356)
Q Consensus 150 Ep~~~LD~~~~~~i---l~~l~-~~~~~i~~thd~~~~~~~~~i~~~~~~~p~i~v~NK~D 206 (356)
|||++||+.....+ ++.+. .+.+++++|||.+.... .+..++++++..
T Consensus 159 EPts~LD~~~~~~l~~~l~~l~~~g~tviivtHd~~~~~~---------~~d~v~~l~~G~ 210 (249)
T 2qi9_C 159 EPMNSLDVAQQSALDKILSALSQQGLAIVMSSHDLNHTLR---------HAHRAWLLKGGK 210 (249)
T ss_dssp STTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHH---------HCSEEEEEETTE
T ss_pred CCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHH---------hCCEEEEEECCE
Confidence 99999999885554 44443 34599999999754321 235667776543
No 32
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=99.88 E-value=1.2e-22 Score=188.32 Aligned_cols=172 Identities=19% Similarity=0.208 Sum_probs=121.6
Q ss_pred CCCCeEEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCccccccccccccceEEEECCEeecccCccccccccccCcccc
Q 018394 8 AGEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRG 87 (356)
Q Consensus 8 ~~~s~~v~~~~g~~v~LvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~~D~pGl~~~~~~~~~~~ 87 (356)
.++||++.+ |++++|+|||||||||||++|+|...| ..|.|.++|.++.-. .+ ...+++.
T Consensus 24 ~~vsl~i~~--Ge~~~liG~nGsGKSTLl~~i~Gl~~p-----------~~G~I~~~g~~~~~~---~~----~~~i~~v 83 (266)
T 2yz2_A 24 ENVSLVINE--GECLLVAGNTGSGKSTLLQIVAGLIEP-----------TSGDVLYDGERKKGY---EI----RRNIGIA 83 (266)
T ss_dssp EEEEEEECT--TCEEEEECSTTSSHHHHHHHHTTSSCC-----------SEEEEEETTEECCHH---HH----GGGEEEE
T ss_pred eeeEEEEcC--CCEEEEECCCCCcHHHHHHHHhCCCCC-----------CCcEEEECCEECchH---Hh----hhhEEEE
Confidence 478999999 889999999999999999999999876 799999999876421 11 1223444
Q ss_pred cccc-cc---ccchhHHHHHHhc-CChHHHHHHHHHHHHHccCc----cccccCcccccceecccee---------eeec
Q 018394 88 RQVI-AV---SKSSDIVLMVLDA-SKSEGHRQILTKELEAVGLR----LNKRPPQIYFKKKKTGGIS---------FNST 149 (356)
Q Consensus 88 ~~~~-~~---~~~~d~i~~v~d~-~~~~~~~~~i~~~L~~~~i~----l~~~~~~lS~g~~qr~~ia---------l~~D 149 (356)
.|.. .. ....+.+.+.... .......+.+.+.|+.+++. +++++.+||+||+||++|| +++|
T Consensus 84 ~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~LSgGq~qRv~lAraL~~~p~lllLD 163 (266)
T 2yz2_A 84 FQYPEDQFFAERVFDEVAFAVKNFYPDRDPVPLVKKAMEFVGLDFDSFKDRVPFFLSGGEKRRVAIASVIVHEPDILILD 163 (266)
T ss_dssp CSSGGGGCCCSSHHHHHHHTTTTTCTTSCSHHHHHHHHHHTTCCHHHHTTCCGGGSCHHHHHHHHHHHHHTTCCSEEEEE
T ss_pred eccchhhcCCCcHHHHHHHHHHhcCCHHHHHHHHHHHHHHcCcCCcccccCChhhCCHHHHHHHHHHHHHHcCCCEEEEc
Confidence 4432 11 2234444442211 11112245678889999885 6788999999999999998 9999
Q ss_pred CCCCCCCHHHHHHH---HHHhc-ccCcEEEEccCCCHHHHHHHHhccccccceEEEeecCCCC
Q 018394 150 LPLTHVDEKLCYQI---LHEYK-IHNAEVLFREDATVDDLIDVIEGNRKYMKCVYVYNKIDVI 208 (356)
Q Consensus 150 Ep~~~LD~~~~~~i---l~~l~-~~~~~i~~thd~~~~~~~~~i~~~~~~~p~i~v~NK~Dl~ 208 (356)
|||++||+.....+ ++.+. .+.++|++|||.+.... .+..++++++.-+.
T Consensus 164 EPts~LD~~~~~~l~~~l~~l~~~g~tii~vtHd~~~~~~---------~~d~v~~l~~G~i~ 217 (266)
T 2yz2_A 164 EPLVGLDREGKTDLLRIVEKWKTLGKTVILISHDIETVIN---------HVDRVVVLEKGKKV 217 (266)
T ss_dssp STTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCCTTTGG---------GCSEEEEEETTEEE
T ss_pred CccccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHH---------hCCEEEEEECCEEE
Confidence 99999999885554 44443 34599999999865321 24667777765443
No 33
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=99.88 E-value=1.3e-22 Score=186.48 Aligned_cols=173 Identities=18% Similarity=0.084 Sum_probs=116.8
Q ss_pred CCCCeEEEecCCcEEEEEcCCCCcHHHHHHHHHcC--CCCccccccccccccceEEEECCEeecccCccccccccccCcc
Q 018394 8 AGEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGT--HSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKG 85 (356)
Q Consensus 8 ~~~s~~v~~~~g~~v~LvG~~gaGKSTLln~L~g~--~~~vs~~p~TT~~~~~G~i~~~g~~i~~~D~pGl~~~~~~~~~ 85 (356)
.++||++.+ |++++|+||||||||||+++|+|. ..| ..|.|.++|.++...+.... ....++
T Consensus 20 ~~vsl~i~~--Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~p-----------~~G~I~~~g~~~~~~~~~~~---~~~~i~ 83 (250)
T 2d2e_A 20 KGVNLVVPK--GEVHALMGPNGAGKSTLGKILAGDPEYTV-----------ERGEILLDGENILELSPDER---ARKGLF 83 (250)
T ss_dssp EEEEEEEET--TCEEEEECSTTSSHHHHHHHHHTCTTCEE-----------EEEEEEETTEECTTSCHHHH---HHTTBC
T ss_pred eceEEEEcC--CCEEEEECCCCCCHHHHHHHHhCCCCCCC-----------CceEEEECCEECCCCCHHHH---HhCcEE
Confidence 478999999 889999999999999999999998 334 79999999998753322111 112344
Q ss_pred cccccccccc---chhHHHHHHh---cC--ChHHHHHHHHHHHHHccC---ccccccCc-ccccceecccee--------
Q 018394 86 RGRQVIAVSK---SSDIVLMVLD---AS--KSEGHRQILTKELEAVGL---RLNKRPPQ-IYFKKKKTGGIS-------- 145 (356)
Q Consensus 86 ~~~~~~~~~~---~~d~i~~v~d---~~--~~~~~~~~i~~~L~~~~i---~l~~~~~~-lS~g~~qr~~ia-------- 145 (356)
+..|....+. ..+++.+... .. ......+.+.+.|+.+++ ..++++.+ ||+||+||++||
T Consensus 84 ~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~LSgGqkQrv~iAraL~~~p~ 163 (250)
T 2d2e_A 84 LAFQYPVEVPGVTIANFLRLALQAKLGREVGVAEFWTKVKKALELLDWDESYLSRYLNEGFSGGEKKRNEILQLLVLEPT 163 (250)
T ss_dssp CCCCCCC-CCSCBHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHTCCGGGGGSBTTCC----HHHHHHHHHHHHHCCS
T ss_pred EeccCCccccCCCHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHcCCChhHhcCCcccCCCHHHHHHHHHHHHHHcCCC
Confidence 4455443333 2455544321 11 112234567888999998 36788888 999999999998
Q ss_pred -eeecCCCCCCCHHHHHHH---HHHhcc-cCcEEEEccCCCHHHHHHHHhccccc-cceEEEeecC
Q 018394 146 -FNSTLPLTHVDEKLCYQI---LHEYKI-HNAEVLFREDATVDDLIDVIEGNRKY-MKCVYVYNKI 205 (356)
Q Consensus 146 -l~~DEp~~~LD~~~~~~i---l~~l~~-~~~~i~~thd~~~~~~~~~i~~~~~~-~p~i~v~NK~ 205 (356)
+++||||++||+.....+ ++.+.. +.++|++|||.+.... . +..++++++.
T Consensus 164 lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vtHd~~~~~~---------~~~d~v~~l~~G 220 (250)
T 2d2e_A 164 YAVLDETDSGLDIDALKVVARGVNAMRGPNFGALVITHYQRILNY---------IQPDKVHVMMDG 220 (250)
T ss_dssp EEEEECGGGTTCHHHHHHHHHHHHHHCSTTCEEEEECSSSGGGGT---------SCCSEEEEEETT
T ss_pred EEEEeCCCcCCCHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHH---------hcCCEEEEEECC
Confidence 999999999999885554 444433 4589999999764321 2 2567777654
No 34
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=99.88 E-value=3.4e-23 Score=189.47 Aligned_cols=173 Identities=16% Similarity=0.102 Sum_probs=118.9
Q ss_pred CCCCeEEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCccccccccccccceEEEECCEeecccCccccccccccCcccc
Q 018394 8 AGEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRG 87 (356)
Q Consensus 8 ~~~s~~v~~~~g~~v~LvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~~D~pGl~~~~~~~~~~~ 87 (356)
.++||++.+ |++++|+|||||||||||++|+|...| ..|.|.++|.++.-.+...+ ...+++.
T Consensus 19 ~~vsl~i~~--Ge~~~i~G~nGsGKSTLl~~l~Gl~~p-----------~~G~i~~~g~~~~~~~~~~~----~~~i~~v 81 (243)
T 1mv5_A 19 RDISFEAQP--NSIIAFAGPSGGGKSTIFSLLERFYQP-----------TAGEITIDGQPIDNISLENW----RSQIGFV 81 (243)
T ss_dssp EEEEEEECT--TEEEEEECCTTSSHHHHHHHHTTSSCC-----------SBSCEEETTEESTTTSCSCC----TTTCCEE
T ss_pred EEeEEEEcC--CCEEEEECCCCCCHHHHHHHHhcCCCC-----------CCcEEEECCEEhhhCCHHHH----HhhEEEE
Confidence 578999999 889999999999999999999999876 79999999998754332211 2234555
Q ss_pred ccccccccchhHHHHHHhcCChHHHHHHHHHHHHHccC--ccc-----------cccCcccccceecccee---------
Q 018394 88 RQVIAVSKSSDIVLMVLDASKSEGHRQILTKELEAVGL--RLN-----------KRPPQIYFKKKKTGGIS--------- 145 (356)
Q Consensus 88 ~~~~~~~~~~d~i~~v~d~~~~~~~~~~i~~~L~~~~i--~l~-----------~~~~~lS~g~~qr~~ia--------- 145 (356)
.|....+.. .+...+.-........+.+.+.++.+++ .++ +++.+||+||+||++||
T Consensus 82 ~q~~~l~~~-tv~enl~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~gl~~~~~~~~~~LSgGq~qrv~lAral~~~p~l 160 (243)
T 1mv5_A 82 SQDSAIMAG-TIRENLTYGLEGDYTDEDLWQVLDLAFARSFVENMPDQLNTEVGERGVKISGGQRQRLAIARAFLRNPKI 160 (243)
T ss_dssp CCSSCCCCE-EHHHHTTSCTTSCSCHHHHHHHHHHHTCTTTTTSSTTGGGCEESTTSBCCCHHHHHHHHHHHHHHHCCSE
T ss_pred cCCCccccc-cHHHHHhhhccCCCCHHHHHHHHHHhChHHHHHhCccchhchhccCcCcCCHHHHHHHHHHHHHhcCCCE
Confidence 554433332 2222221110111122346677777776 333 34579999999999998
Q ss_pred eeecCCCCCCCHHH---HHHHHHHhcccCcEEEEccCCCHHHHHHHHhccccccceEEEeecCCCC
Q 018394 146 FNSTLPLTHVDEKL---CYQILHEYKIHNAEVLFREDATVDDLIDVIEGNRKYMKCVYVYNKIDVI 208 (356)
Q Consensus 146 l~~DEp~~~LD~~~---~~~il~~l~~~~~~i~~thd~~~~~~~~~i~~~~~~~p~i~v~NK~Dl~ 208 (356)
+++||||++||+.. +.+++..+..+.+++++||+.+... .+..++++++.-+.
T Consensus 161 llLDEPts~LD~~~~~~i~~~l~~~~~~~tvi~vtH~~~~~~----------~~d~v~~l~~G~i~ 216 (243)
T 1mv5_A 161 LMLDEATASLDSESESMVQKALDSLMKGRTTLVIAHRLSTIV----------DADKIYFIEKGQIT 216 (243)
T ss_dssp EEEECCSCSSCSSSCCHHHHHHHHHHTTSEEEEECCSHHHHH----------HCSEEEEEETTEEC
T ss_pred EEEECCcccCCHHHHHHHHHHHHHhcCCCEEEEEeCChHHHH----------hCCEEEEEECCEEE
Confidence 99999999999876 5566666654569999999964322 13667777765443
No 35
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=99.88 E-value=1.4e-22 Score=187.91 Aligned_cols=177 Identities=15% Similarity=0.094 Sum_probs=119.7
Q ss_pred CCCCeEEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCccccccccccccceEEEECCEeecccCccccccccccCcccc
Q 018394 8 AGEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRG 87 (356)
Q Consensus 8 ~~~s~~v~~~~g~~v~LvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~~D~pGl~~~~~~~~~~~ 87 (356)
.++||++.+ |++++|+|||||||||||++|+|.... .|..|.|.++|.++.-.+.... ...++++.
T Consensus 37 ~~vsl~i~~--Ge~~~l~G~NGsGKSTLlk~l~Gl~~~---------~p~~G~I~~~g~~i~~~~~~~~---~~~~i~~v 102 (267)
T 2zu0_C 37 RGLSLDVHP--GEVHAIMGPNGSGKSTLSATLAGREDY---------EVTGGTVEFKGKDLLALSPEDR---AGEGIFMA 102 (267)
T ss_dssp EEEEEEECT--TCEEEEECCTTSSHHHHHHHHHTCTTC---------EEEEEEEEETTEEGGGSCHHHH---HHHTEEEE
T ss_pred EeeEEEEcC--CCEEEEECCCCCCHHHHHHHHhCCCCC---------CCCCeEEEECCEECCcCCHHHH---hhCCEEEE
Confidence 478999999 889999999999999999999998421 1378999999998754332111 11223444
Q ss_pred ccccccccc---hhHHHHHHh------cC---ChHHHHHHHHHHHHHccC---ccccccC-cccccceecccee------
Q 018394 88 RQVIAVSKS---SDIVLMVLD------AS---KSEGHRQILTKELEAVGL---RLNKRPP-QIYFKKKKTGGIS------ 145 (356)
Q Consensus 88 ~~~~~~~~~---~d~i~~v~d------~~---~~~~~~~~i~~~L~~~~i---~l~~~~~-~lS~g~~qr~~ia------ 145 (356)
.|....+.. .+++.+... .. ......+.+.+.|+.+++ ..++++. +||+||+||++||
T Consensus 103 ~Q~~~l~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~LSgGq~QRv~iAraL~~~ 182 (267)
T 2zu0_C 103 FQYPVEIPGVSNQFFLQTALNAVRSYRGQETLDRFDFQDLMEEKIALLKMPEDLLTRSVNVGFSGGEKKRNDILQMAVLE 182 (267)
T ss_dssp CSSCCCCTTCBHHHHHHHHHHHHHHGGGCCCCCHHHHHHHHHHHHHHTTCCTTTTTSBTTTTCCHHHHHHHHHHHHHHHC
T ss_pred ccCccccccccHHHHHHHHHHhhhhhhccccCCHHHHHHHHHHHHHHcCCChhHhcCCcccCCCHHHHHHHHHHHHHHhC
Confidence 454433332 344433221 11 112234567889999998 2466666 5999999999998
Q ss_pred ---eeecCCCCCCCHHHHHHHHHHhc---c-cCcEEEEccCCCHHHHHHHHhccccccceEEEeecCC
Q 018394 146 ---FNSTLPLTHVDEKLCYQILHEYK---I-HNAEVLFREDATVDDLIDVIEGNRKYMKCVYVYNKID 206 (356)
Q Consensus 146 ---l~~DEp~~~LD~~~~~~il~~l~---~-~~~~i~~thd~~~~~~~~~i~~~~~~~p~i~v~NK~D 206 (356)
+++||||++||+.....+++.+. . +.++|++|||.+.... ..+..++++++.-
T Consensus 183 p~lLlLDEPts~LD~~~~~~l~~~l~~l~~~g~tviivtHd~~~~~~--------~~~d~v~~l~~G~ 242 (267)
T 2zu0_C 183 PELCILDESDSGLDIDALKVVADGVNSLRDGKRSFIIVTHYQRILDY--------IKPDYVHVLYQGR 242 (267)
T ss_dssp CSEEEEESTTTTCCHHHHHHHHHHHHTTCCSSCEEEEECSSGGGGGT--------SCCSEEEEEETTE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeeCHHHHHh--------hcCCEEEEEECCE
Confidence 99999999999998666555443 2 4589999999754321 0136677776543
No 36
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=99.88 E-value=3.2e-23 Score=195.44 Aligned_cols=170 Identities=15% Similarity=0.121 Sum_probs=120.2
Q ss_pred CCCCeEEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCccccccccccccceEEEECCEeecccCccccccccccCcccc
Q 018394 8 AGEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRG 87 (356)
Q Consensus 8 ~~~s~~v~~~~g~~v~LvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~~D~pGl~~~~~~~~~~~ 87 (356)
+++||++.+ |+++||+||||||||||+++|+|...| ..|.|.++|.++.-++...++ ..++++
T Consensus 71 ~~isl~i~~--Ge~vaivG~sGsGKSTLl~ll~gl~~p-----------~~G~I~i~G~~i~~~~~~~~r----~~i~~v 133 (306)
T 3nh6_A 71 QDVSFTVMP--GQTLALVGPSGAGKSTILRLLFRFYDI-----------SSGCIRIDGQDISQVTQASLR----SHIGVV 133 (306)
T ss_dssp EEEEEEECT--TCEEEEESSSCHHHHHHHHHHTTSSCC-----------SEEEEEETTEETTSBCHHHHH----HTEEEE
T ss_pred eeeeEEEcC--CCEEEEECCCCchHHHHHHHHHcCCCC-----------CCcEEEECCEEcccCCHHHHh----cceEEE
Confidence 578999999 889999999999999999999999876 899999999998765543322 345566
Q ss_pred ccccccccc--hhHHHHHHhcCChHHHHHHHHHHHHHccC-------------ccccccCcccccceecccee-------
Q 018394 88 RQVIAVSKS--SDIVLMVLDASKSEGHRQILTKELEAVGL-------------RLNKRPPQIYFKKKKTGGIS------- 145 (356)
Q Consensus 88 ~~~~~~~~~--~d~i~~v~d~~~~~~~~~~i~~~L~~~~i-------------~l~~~~~~lS~g~~qr~~ia------- 145 (356)
.|....+.. .+++.+...... .+.+.+.++.+++ .+......||+||+||++||
T Consensus 134 ~Q~~~lf~~Tv~eNi~~~~~~~~----~~~~~~~~~~~~l~~~i~~lp~gl~t~~~~~g~~LSGGqrQRvaiARAL~~~p 209 (306)
T 3nh6_A 134 PQDTVLFNDTIADNIRYGRVTAG----NDEVEAAAQAAGIHDAIMAFPEGYRTQVGERGLKLSGGEKQRVAIARTILKAP 209 (306)
T ss_dssp CSSCCCCSEEHHHHHHTTSTTCC----HHHHHHHHHHHTCHHHHHHSTTGGGCEESTTSBCCCHHHHHHHHHHHHHHHCC
T ss_pred ecCCccCcccHHHHHHhhcccCC----HHHHHHHHHHhCcHHHHHhccchhhhHhcCCcCCCCHHHHHHHHHHHHHHhCC
Confidence 665554432 344333211111 1233444444433 34556679999999999998
Q ss_pred --eeecCCCCCCCHHHHHHHH---HHhcccCcEEEEccCCCHHHHHHHHhccccccceEEEeecCCCC
Q 018394 146 --FNSTLPLTHVDEKLCYQIL---HEYKIHNAEVLFREDATVDDLIDVIEGNRKYMKCVYVYNKIDVI 208 (356)
Q Consensus 146 --l~~DEp~~~LD~~~~~~il---~~l~~~~~~i~~thd~~~~~~~~~i~~~~~~~p~i~v~NK~Dl~ 208 (356)
+++||||++||+.....++ ..+..+.|+|++||+++... .+..|+++++.-+.
T Consensus 210 ~iLlLDEPts~LD~~~~~~i~~~l~~l~~~~Tvi~itH~l~~~~----------~aD~i~vl~~G~iv 267 (306)
T 3nh6_A 210 GIILLDEATSALDTSNERAIQASLAKVCANRTTIVVAHRLSTVV----------NADQILVIKDGCIV 267 (306)
T ss_dssp SEEEEECCSSCCCHHHHHHHHHHHHHHHTTSEEEEECCSHHHHH----------TCSEEEEEETTEEE
T ss_pred CEEEEECCcccCCHHHHHHHHHHHHHHcCCCEEEEEEcChHHHH----------cCCEEEEEECCEEE
Confidence 9999999999998855544 44445679999999965432 24778888876554
No 37
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=99.87 E-value=2.7e-22 Score=184.56 Aligned_cols=159 Identities=21% Similarity=0.182 Sum_probs=112.0
Q ss_pred CCCCeEEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCccccccccccccceEEEECCEeecccCccccccccccCcccc
Q 018394 8 AGEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRG 87 (356)
Q Consensus 8 ~~~s~~v~~~~g~~v~LvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~~D~pGl~~~~~~~~~~~ 87 (356)
.++||++.+ |++++|+|||||||||||++|+|...| ..|.|.+.. .+++.
T Consensus 22 ~~isl~i~~--Ge~~~l~G~nGsGKSTLl~~l~Gl~~p-----------~~G~I~~~~-----------------~i~~v 71 (253)
T 2nq2_C 22 QQLNFDLNK--GDILAVLGQNGCGKSTLLDLLLGIHRP-----------IQGKIEVYQ-----------------SIGFV 71 (253)
T ss_dssp EEEEEEEET--TCEEEEECCSSSSHHHHHHHHTTSSCC-----------SEEEEEECS-----------------CEEEE
T ss_pred EEEEEEECC--CCEEEEECCCCCCHHHHHHHHhCCCCC-----------CCcEEEEec-----------------cEEEE
Confidence 478999999 889999999999999999999999876 789887311 11122
Q ss_pred cccccc---ccchhHHHHHHhcC------ChHHHHHHHHHHHHHccC--ccccccCcccccceecccee---------ee
Q 018394 88 RQVIAV---SKSSDIVLMVLDAS------KSEGHRQILTKELEAVGL--RLNKRPPQIYFKKKKTGGIS---------FN 147 (356)
Q Consensus 88 ~~~~~~---~~~~d~i~~v~d~~------~~~~~~~~i~~~L~~~~i--~l~~~~~~lS~g~~qr~~ia---------l~ 147 (356)
.|.... ....+.+.+..... ......+.+.+.|+.+++ .+++++.+||+||+||++|| ++
T Consensus 72 ~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~lAraL~~~p~lll 151 (253)
T 2nq2_C 72 PQFFSSPFAYSVLDIVLMGRSTHINTFAKPKSHDYQVAMQALDYLNLTHLAKREFTSLSGGQRQLILIARAIASECKLIL 151 (253)
T ss_dssp CSCCCCSSCCBHHHHHHGGGGGGSCTTCCCCHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHHHHHHHHHTTCSEEE
T ss_pred cCCCccCCCCCHHHHHHHhhhhhcccccCCCHHHHHHHHHHHHHcCChHHhcCChhhCCHHHHHHHHHHHHHHcCCCEEE
Confidence 222211 12234444322111 122334668889999999 67889999999999999998 99
Q ss_pred ecCCCCCCCHHHHHHH---HHHhcc--cCcEEEEccCCCHHHHHHHHhccccccceEEEeecC
Q 018394 148 STLPLTHVDEKLCYQI---LHEYKI--HNAEVLFREDATVDDLIDVIEGNRKYMKCVYVYNKI 205 (356)
Q Consensus 148 ~DEp~~~LD~~~~~~i---l~~l~~--~~~~i~~thd~~~~~~~~~i~~~~~~~p~i~v~NK~ 205 (356)
+||||++||+.....+ +..+.. +.++|++|||.+.... .+..++++++.
T Consensus 152 LDEPts~LD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~~~~~---------~~d~v~~l~~G 205 (253)
T 2nq2_C 152 LDEPTSALDLANQDIVLSLLIDLAQSQNMTVVFTTHQPNQVVA---------IANKTLLLNKQ 205 (253)
T ss_dssp ESSSSTTSCHHHHHHHHHHHHHHHHTSCCEEEEEESCHHHHHH---------HCSEEEEEETT
T ss_pred EeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHH---------hCCEEEEEeCC
Confidence 9999999999885554 444443 4599999999754321 13556666543
No 38
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=99.87 E-value=8.3e-23 Score=189.85 Aligned_cols=173 Identities=13% Similarity=0.094 Sum_probs=117.8
Q ss_pred CCCCeEEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCccccccccccccceEEEECCEeecccCccccccccccCcccc
Q 018394 8 AGEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRG 87 (356)
Q Consensus 8 ~~~s~~v~~~~g~~v~LvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~~D~pGl~~~~~~~~~~~ 87 (356)
.++||++.+ |++++|+|||||||||||++|+|...| ..|.|.++|.++.-.+...+ ...+++.
T Consensus 36 ~~vsl~i~~--Ge~~~i~G~nGsGKSTLlk~l~Gl~~p-----------~~G~I~~~g~~i~~~~~~~~----~~~i~~v 98 (271)
T 2ixe_A 36 QGLTFTLYP--GKVTALVGPNGSGKSTVAALLQNLYQP-----------TGGKVLLDGEPLVQYDHHYL----HTQVAAV 98 (271)
T ss_dssp EEEEEEECT--TCEEEEECSTTSSHHHHHHHHTTSSCC-----------SEEEEEETTEEGGGBCHHHH----HHHEEEE
T ss_pred EeeEEEECC--CCEEEEECCCCCCHHHHHHHHhcCCCC-----------CCCEEEECCEEcccCCHHHH----hccEEEE
Confidence 478999999 889999999999999999999999876 79999999998754332211 1223444
Q ss_pred cccccccc--chhHHHHHHhcCCh-HH-----HHHHHHHHHHHc--cC--ccccccCcccccceecccee---------e
Q 018394 88 RQVIAVSK--SSDIVLMVLDASKS-EG-----HRQILTKELEAV--GL--RLNKRPPQIYFKKKKTGGIS---------F 146 (356)
Q Consensus 88 ~~~~~~~~--~~d~i~~v~d~~~~-~~-----~~~~i~~~L~~~--~i--~l~~~~~~lS~g~~qr~~ia---------l 146 (356)
.|....+. ..+++.+....... .. ....+.+.++.+ ++ .+++++.+||+||+||++|| +
T Consensus 99 ~Q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~~~~~LSgGq~QRv~lAraL~~~p~ll 178 (271)
T 2ixe_A 99 GQEPLLFGRSFRENIAYGLTRTPTMEEITAVAMESGAHDFISGFPQGYDTEVGETGNQLSGGQRQAVALARALIRKPRLL 178 (271)
T ss_dssp CSSCCCCSSBHHHHHHTTCSSCCCHHHHHHHHHHHTCHHHHHHSTTGGGSBCCGGGTTSCHHHHHHHHHHHHHTTCCSEE
T ss_pred ecCCccccccHHHHHhhhcccCChHHHHHHHHHHHhHHHHHHhhhcchhhhhcCCcCCCCHHHHHHHHHHHHHhcCCCEE
Confidence 45433332 23444332111111 11 111234566666 56 57888999999999999998 9
Q ss_pred eecCCCCCCCHHHHHHHHH---Hhcc--cCcEEEEccCCCHHHHHHHHhccccccceEEEeecCCC
Q 018394 147 NSTLPLTHVDEKLCYQILH---EYKI--HNAEVLFREDATVDDLIDVIEGNRKYMKCVYVYNKIDV 207 (356)
Q Consensus 147 ~~DEp~~~LD~~~~~~il~---~l~~--~~~~i~~thd~~~~~~~~~i~~~~~~~p~i~v~NK~Dl 207 (356)
++||||++||+.....+++ .+.. +.++|++|||.+... .+..++++++.-+
T Consensus 179 lLDEPts~LD~~~~~~i~~~l~~~~~~~g~tviivtHd~~~~~----------~~d~v~~l~~G~i 234 (271)
T 2ixe_A 179 ILDNATSALDAGNQLRVQRLLYESPEWASRTVLLITQQLSLAE----------RAHHILFLKEGSV 234 (271)
T ss_dssp EEESTTTTCCHHHHHHHHHHHHHCTTTTTSEEEEECSCHHHHT----------TCSEEEEEETTEE
T ss_pred EEECCccCCCHHHHHHHHHHHHHHHhhcCCEEEEEeCCHHHHH----------hCCEEEEEECCEE
Confidence 9999999999998655554 4432 458999999964321 1466777776533
No 39
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=99.86 E-value=9.5e-22 Score=181.65 Aligned_cols=168 Identities=14% Similarity=0.137 Sum_probs=114.3
Q ss_pred CCCCeEEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCccccccccccccceEEEECCEeecccCccccccccccCcccc
Q 018394 8 AGEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRG 87 (356)
Q Consensus 8 ~~~s~~v~~~~g~~v~LvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~~D~pGl~~~~~~~~~~~ 87 (356)
.++||++.+ |++++|+||||||||||+++|+|...+ .|.|.++|.++.-.+...+ ...+++.
T Consensus 37 ~~vsl~i~~--Ge~~~i~G~nGsGKSTLl~~l~Gl~~~------------~G~I~i~g~~i~~~~~~~~----~~~i~~v 98 (260)
T 2ghi_A 37 KSINFFIPS--GTTCALVGHTGSGKSTIAKLLYRFYDA------------EGDIKIGGKNVNKYNRNSI----RSIIGIV 98 (260)
T ss_dssp EEEEEEECT--TCEEEEECSTTSSHHHHHHHHTTSSCC------------EEEEEETTEEGGGBCHHHH----HTTEEEE
T ss_pred EeeEEEECC--CCEEEEECCCCCCHHHHHHHHhccCCC------------CeEEEECCEEhhhcCHHHH----hccEEEE
Confidence 478999999 889999999999999999999998643 6999999998754332211 2234555
Q ss_pred ccccccccc--hhHHHHHHhcCChHHHHHHHHHHHHHccC--c-----------cccccCcccccceecccee-------
Q 018394 88 RQVIAVSKS--SDIVLMVLDASKSEGHRQILTKELEAVGL--R-----------LNKRPPQIYFKKKKTGGIS------- 145 (356)
Q Consensus 88 ~~~~~~~~~--~d~i~~v~d~~~~~~~~~~i~~~L~~~~i--~-----------l~~~~~~lS~g~~qr~~ia------- 145 (356)
.|....+.. .+++.+ .... ...+.+.+.++.+++ . +++++.+||+||+||++||
T Consensus 99 ~Q~~~l~~~tv~enl~~---~~~~-~~~~~~~~~l~~~~l~~~~~~l~~~~~~~~~~~~~~LSgGqkqRv~lAraL~~~p 174 (260)
T 2ghi_A 99 PQDTILFNETIKYNILY---GKLD-ATDEEVIKATKSAQLYDFIEALPKKWDTIVGNKGMKLSGGERQRIAIARCLLKDP 174 (260)
T ss_dssp CSSCCCCSEEHHHHHHT---TCTT-CCHHHHHHHHHHTTCHHHHHTSTTGGGCEESSSSBCCCHHHHHHHHHHHHHHHCC
T ss_pred cCCCcccccCHHHHHhc---cCCC-CCHHHHHHHHHHhCCHHHHHhccccccccccCCcCcCCHHHHHHHHHHHHHHcCC
Confidence 554433322 333322 1111 112334555666555 1 2456789999999999998
Q ss_pred --eeecCCCCCCCHHHHHH---HHHHhcccCcEEEEccCCCHHHHHHHHhccccccceEEEeecCCC
Q 018394 146 --FNSTLPLTHVDEKLCYQ---ILHEYKIHNAEVLFREDATVDDLIDVIEGNRKYMKCVYVYNKIDV 207 (356)
Q Consensus 146 --l~~DEp~~~LD~~~~~~---il~~l~~~~~~i~~thd~~~~~~~~~i~~~~~~~p~i~v~NK~Dl 207 (356)
+++||||++||+..... ++..+..+.++|++||+..... .+..++++++.-+
T Consensus 175 ~lllLDEPts~LD~~~~~~i~~~l~~l~~~~tviivtH~~~~~~----------~~d~i~~l~~G~i 231 (260)
T 2ghi_A 175 KIVIFDEATSSLDSKTEYLFQKAVEDLRKNRTLIIIAHRLSTIS----------SAESIILLNKGKI 231 (260)
T ss_dssp SEEEEECCCCTTCHHHHHHHHHHHHHHTTTSEEEEECSSGGGST----------TCSEEEEEETTEE
T ss_pred CEEEEECccccCCHHHHHHHHHHHHHhcCCCEEEEEcCCHHHHH----------hCCEEEEEECCEE
Confidence 99999999999988554 4445544569999999975422 2466777776543
No 40
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=99.86 E-value=1.9e-21 Score=179.75 Aligned_cols=166 Identities=19% Similarity=0.198 Sum_probs=118.0
Q ss_pred CCCCeEEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCccccccccccccceEEEECCEeecccCccccccccccCcc-c
Q 018394 8 AGEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKG-R 86 (356)
Q Consensus 8 ~~~s~~v~~~~g~~v~LvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~~D~pGl~~~~~~~~~-~ 86 (356)
.++||++. + ++++|+|||||||||||++|+|.. | ..|.+.++|.++.-. + . ...++ +
T Consensus 22 ~~vsl~i~-G--e~~~i~G~NGsGKSTLlk~l~Gl~-p-----------~~G~I~~~g~~~~~~--~----~-~~~i~~~ 79 (263)
T 2pjz_A 22 ENINLEVN-G--EKVIILGPNGSGKTTLLRAISGLL-P-----------YSGNIFINGMEVRKI--R----N-YIRYSTN 79 (263)
T ss_dssp EEEEEEEC-S--SEEEEECCTTSSHHHHHHHHTTSS-C-----------CEEEEEETTEEGGGC--S----C-CTTEEEC
T ss_pred EeeeEEEC-C--EEEEEECCCCCCHHHHHHHHhCCC-C-----------CCcEEEECCEECcch--H----H-hhheEEE
Confidence 46778887 4 599999999999999999999998 7 799999999876421 1 1 22344 4
Q ss_pred ccccccc-ccchhHHHHHHhcCChHHHHHHHHHHHHHccCc---cccccCcccccceecccee---------eeecCCCC
Q 018394 87 GRQVIAV-SKSSDIVLMVLDASKSEGHRQILTKELEAVGLR---LNKRPPQIYFKKKKTGGIS---------FNSTLPLT 153 (356)
Q Consensus 87 ~~~~~~~-~~~~d~i~~v~d~~~~~~~~~~i~~~L~~~~i~---l~~~~~~lS~g~~qr~~ia---------l~~DEp~~ 153 (356)
..|.... ....+.+.+...... ...+.+.+.|+.+++. +++++.+||+||+||+++| +++||||+
T Consensus 80 v~Q~~~l~~tv~enl~~~~~~~~--~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqRv~lAraL~~~p~lllLDEPts 157 (263)
T 2pjz_A 80 LPEAYEIGVTVNDIVYLYEELKG--LDRDLFLEMLKALKLGEEILRRKLYKLSAGQSVLVRTSLALASQPEIVGLDEPFE 157 (263)
T ss_dssp CGGGSCTTSBHHHHHHHHHHHTC--CCHHHHHHHHHHTTCCGGGGGSBGGGSCHHHHHHHHHHHHHHTCCSEEEEECTTT
T ss_pred eCCCCccCCcHHHHHHHhhhhcc--hHHHHHHHHHHHcCCChhHhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEECCcc
Confidence 4444322 223455544332211 1234678889999884 7888999999999999998 99999999
Q ss_pred CCCHHHHHHHHHHhcc-cCcEEEEccCCCHHHHHHHHhccccccc-eEEEeecCC
Q 018394 154 HVDEKLCYQILHEYKI-HNAEVLFREDATVDDLIDVIEGNRKYMK-CVYVYNKID 206 (356)
Q Consensus 154 ~LD~~~~~~il~~l~~-~~~~i~~thd~~~~~~~~~i~~~~~~~p-~i~v~NK~D 206 (356)
+||+.....+++.+.. ..+++++|||...... .+. .++++.+.-
T Consensus 158 ~LD~~~~~~l~~~L~~~~~tviivtHd~~~~~~---------~~d~~i~~l~~G~ 203 (263)
T 2pjz_A 158 NVDAARRHVISRYIKEYGKEGILVTHELDMLNL---------YKEYKAYFLVGNR 203 (263)
T ss_dssp TCCHHHHHHHHHHHHHSCSEEEEEESCGGGGGG---------CTTSEEEEEETTE
T ss_pred ccCHHHHHHHHHHHHHhcCcEEEEEcCHHHHHH---------hcCceEEEEECCE
Confidence 9999987766665542 1299999999754321 235 666766543
No 41
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=99.86 E-value=2.1e-22 Score=195.79 Aligned_cols=170 Identities=18% Similarity=0.152 Sum_probs=124.6
Q ss_pred CCCCeEEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCccccccccccccceEEEECCEeecccCccccccccccCcccc
Q 018394 8 AGEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRG 87 (356)
Q Consensus 8 ~~~s~~v~~~~g~~v~LvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~~D~pGl~~~~~~~~~~~ 87 (356)
+++||+|.+ |++++|+|||||||||||++|+|... ..|.|.++|.++.-++...+ ...+++.
T Consensus 38 ~~vsl~i~~--Ge~~~llGpsGsGKSTLLr~iaGl~~------------~~G~I~i~G~~i~~~~~~~~----rr~ig~v 99 (390)
T 3gd7_A 38 ENISFSISP--GQRVGLLGRTGSGKSTLLSAFLRLLN------------TEGEIQIDGVSWDSITLEQW----RKAFGVI 99 (390)
T ss_dssp EEEEEEECT--TCEEEEEESTTSSHHHHHHHHHTCSE------------EEEEEEESSCBTTSSCHHHH----HHTEEEE
T ss_pred eceeEEEcC--CCEEEEECCCCChHHHHHHHHhCCCC------------CCeEEEECCEECCcCChHHH----hCCEEEE
Confidence 588999999 88999999999999999999999862 47999999998764432221 2345666
Q ss_pred ccccccccchhHHHHHHhcCChHHHHHHHHHHHHHccC--ccccccCc-----------ccccceecccee---------
Q 018394 88 RQVIAVSKSSDIVLMVLDASKSEGHRQILTKELEAVGL--RLNKRPPQ-----------IYFKKKKTGGIS--------- 145 (356)
Q Consensus 88 ~~~~~~~~~~d~i~~v~d~~~~~~~~~~i~~~L~~~~i--~l~~~~~~-----------lS~g~~qr~~ia--------- 145 (356)
+|....+.. .+...+. ... ....+.+.+.|+.+++ .+++++.. ||+||+||++||
T Consensus 100 ~Q~~~lf~~-tv~enl~-~~~-~~~~~~v~~~l~~~~L~~~~~~~p~~l~~~i~~~g~~LSGGqrQRvalARAL~~~P~l 176 (390)
T 3gd7_A 100 PQKVFIFSG-TFRKNLD-PNA-AHSDQEIWKVADEVGLRSVIEQFPGKLDFVLVDGGCVLSHGHKQLMCLARSVLSKAKI 176 (390)
T ss_dssp SCCCCCCSE-EHHHHHC-TTC-CSCHHHHHHHHHHTTCHHHHTTSTTGGGCEECTTTTTSCHHHHHHHHHHHHHHTTCCE
T ss_pred cCCcccCcc-CHHHHhh-hcc-ccCHHHHHHHHHHhCCHHHHhhcccccccccccccccCCHHHHHHHHHHHHHhcCCCE
Confidence 666555432 2222221 111 1123467788999999 67888887 999999999998
Q ss_pred eeecCCCCCCCHHHHHHHHHHhc---ccCcEEEEccCCCHHHHHHHHhccccccceEEEeecCCCC
Q 018394 146 FNSTLPLTHVDEKLCYQILHEYK---IHNAEVLFREDATVDDLIDVIEGNRKYMKCVYVYNKIDVI 208 (356)
Q Consensus 146 l~~DEp~~~LD~~~~~~il~~l~---~~~~~i~~thd~~~~~~~~~i~~~~~~~p~i~v~NK~Dl~ 208 (356)
+++||||++||+....+++..+. .+.+++++|||..... .+..|+++++.-+.
T Consensus 177 LLLDEPts~LD~~~~~~l~~~l~~~~~~~tvi~vtHd~e~~~----------~aDri~vl~~G~i~ 232 (390)
T 3gd7_A 177 LLLDEPSAHLDPVTYQIIRRTLKQAFADCTVILCEARIEAML----------ECDQFLVIEENKVR 232 (390)
T ss_dssp EEEESHHHHSCHHHHHHHHHHHHTTTTTSCEEEECSSSGGGT----------TCSEEEEEETTEEE
T ss_pred EEEeCCccCCCHHHHHHHHHHHHHHhCCCEEEEEEcCHHHHH----------hCCEEEEEECCEEE
Confidence 99999999999988666655554 3459999999964321 24778899887654
No 42
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=99.84 E-value=4e-21 Score=196.60 Aligned_cols=171 Identities=13% Similarity=0.151 Sum_probs=120.8
Q ss_pred CCCCeEEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCccccccccccccceEEEECCEeecccCccccccccccCcccc
Q 018394 8 AGEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRG 87 (356)
Q Consensus 8 ~~~s~~v~~~~g~~v~LvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~~D~pGl~~~~~~~~~~~ 87 (356)
+++||++++ |+.++|+||||||||||+++|+|...| ..|.|.++|.++.-.+...+ ...+++.
T Consensus 360 ~~i~l~i~~--G~~~~ivG~sGsGKSTll~~l~g~~~p-----------~~G~i~~~g~~~~~~~~~~~----~~~i~~v 422 (582)
T 3b5x_A 360 SHVSFSIPQ--GKTVALVGRSGSGKSTIANLFTRFYDV-----------DSGSICLDGHDVRDYKLTNL----RRHFALV 422 (582)
T ss_pred ccceEEECC--CCEEEEECCCCCCHHHHHHHHhcCCCC-----------CCCEEEECCEEhhhCCHHHH----hcCeEEE
Confidence 689999999 889999999999999999999999876 89999999998865443322 2234555
Q ss_pred ccccccccc--hhHHHHHHhcCChHHHHHHHHHHHHHccC--ccc-----------cccCcccccceecccee-------
Q 018394 88 RQVIAVSKS--SDIVLMVLDASKSEGHRQILTKELEAVGL--RLN-----------KRPPQIYFKKKKTGGIS------- 145 (356)
Q Consensus 88 ~~~~~~~~~--~d~i~~v~d~~~~~~~~~~i~~~L~~~~i--~l~-----------~~~~~lS~g~~qr~~ia------- 145 (356)
.|....+.. .|++.+. ..+....+.+.+.++.+++ .++ ....+||+||+||++||
T Consensus 423 ~Q~~~l~~~tv~eni~~~---~~~~~~~~~~~~~~~~~~l~~~~~~~p~g~~t~~~~~~~~LSgGq~qr~~iAral~~~p 499 (582)
T 3b5x_A 423 SQNVHLFNDTIANNIAYA---AEGEYTREQIEQAARQAHAMEFIENMPQGLDTVIGENGTSLSGGQRQRVAIARALLRDA 499 (582)
T ss_pred cCCCccccccHHHHHhcc---CCCCCCHHHHHHHHHHCCCHHHHHhCcccccchhcCCCCcCCHHHHHHHHHHHHHHcCC
Confidence 665444432 3333321 1011223456677777766 233 34579999999999998
Q ss_pred --eeecCCCCCCCHHHHHHHH---HHhcccCcEEEEccCCCHHHHHHHHhccccccceEEEeecCCCC
Q 018394 146 --FNSTLPLTHVDEKLCYQIL---HEYKIHNAEVLFREDATVDDLIDVIEGNRKYMKCVYVYNKIDVI 208 (356)
Q Consensus 146 --l~~DEp~~~LD~~~~~~il---~~l~~~~~~i~~thd~~~~~~~~~i~~~~~~~p~i~v~NK~Dl~ 208 (356)
+++||||++||+.....+. +.+..+.+++++||+.+.... ++.++++++.-+.
T Consensus 500 ~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~~----------~d~i~~l~~G~i~ 557 (582)
T 3b5x_A 500 PVLILDEATSALDTESERAIQAALDELQKNKTVLVIAHRLSTIEQ----------ADEILVVDEGEII 557 (582)
T ss_pred CEEEEECccccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHh----------CCEEEEEECCEEE
Confidence 9999999999998855544 444445699999999754322 3667787765443
No 43
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=99.84 E-value=7.4e-23 Score=200.60 Aligned_cols=244 Identities=25% Similarity=0.337 Sum_probs=156.6
Q ss_pred CCCCeEEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCccccccccccccceEEEECC-EeecccCccccccccccCccc
Q 018394 8 AGEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYND-TKIQLLDLPGIIEGASEGKGR 86 (356)
Q Consensus 8 ~~~s~~v~~~~g~~v~LvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g-~~i~~~D~pGl~~~~~~~~~~ 86 (356)
.+++|++.. ++.|+|+|+||||||||||+|++....+++|||||++|..|.+.+++ ..+.+.|+||+.+.+....++
T Consensus 148 ~~i~lelk~--g~~VgLVG~~gAGKSTLL~~Lsg~~~~i~~~~ftTl~p~~G~V~~~~~~~~~l~DtpGli~~a~~~~~L 225 (416)
T 1udx_A 148 RRLRLELML--IADVGLVGYPNAGKSSLLAAMTRAHPKIAPYPFTTLSPNLGVVEVSEEERFTLADIPGIIEGASEGKGL 225 (416)
T ss_dssp EEEEEEECC--SCSEEEECCGGGCHHHHHHHHCSSCCEECCCTTCSSCCEEEEEECSSSCEEEEEECCCCCCCGGGSCCS
T ss_pred eeeeeEEcC--CCEEEEECCCCCcHHHHHHHHHcCCccccCcccceecceeeEEEecCcceEEEEeccccccchhhhhhh
Confidence 367888888 78999999999999999999999988899999999999999999986 788899999987655544444
Q ss_pred cccccccccchhHHHHHHhcC-ChHHHHHHHHHHHHHccCccccccCcccccceeccceeeeecCCCCCCCHHHHHHHHH
Q 018394 87 GRQVIAVSKSSDIVLMVLDAS-KSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILH 165 (356)
Q Consensus 87 ~~~~~~~~~~~d~i~~v~d~~-~~~~~~~~i~~~L~~~~i~l~~~~~~lS~g~~qr~~ial~~DEp~~~LD~~~~~~il~ 165 (356)
...++...+.++.+++++|.. .+.. ++|.+++|+..++
T Consensus 226 ~~~fl~~~era~~lL~vvDls~~~~~---------------------~ls~g~~el~~la-------------------- 264 (416)
T 1udx_A 226 GLEFLRHIARTRVLLYVLDAADEPLK---------------------TLETLRKEVGAYD-------------------- 264 (416)
T ss_dssp CHHHHHHHTSSSEEEEEEETTSCHHH---------------------HHHHHHHHHHHHC--------------------
T ss_pred hHHHHHHHHHHHhhhEEeCCccCCHH---------------------HHHHHHHHHHHHh--------------------
Confidence 344433344455555555553 1111 1122222111110
Q ss_pred HhcccCcEEEEccCCCHHHHHHHHhccccccceEEEeecCCCCChhhHHHHh----c-CCCEEEeccccccchHHHHHHH
Q 018394 166 EYKIHNAEVLFREDATVDDLIDVIEGNRKYMKCVYVYNKIDVIGIDDVDKLA----R-QPNSVVISCNLKLNLDRLLARM 240 (356)
Q Consensus 166 ~l~~~~~~i~~thd~~~~~~~~~i~~~~~~~p~i~v~NK~Dl~~~~~~~~l~----~-~~~~i~iSa~~~~~l~~L~~~i 240 (356)
. ....+|.++|+||+|+.....++.+. . ...++++||+++.|+++|.+.|
T Consensus 265 ---------------------~----aL~~~P~ILVlNKlDl~~~~~~~~l~~~l~~~g~~vi~iSA~~g~gi~eL~~~i 319 (416)
T 1udx_A 265 ---------------------P----ALLRRPSLVALNKVDLLEEEAVKALADALAREGLAVLPVSALTGAGLPALKEAL 319 (416)
T ss_dssp ---------------------H----HHHHSCEEEEEECCTTSCHHHHHHHHHHHHTTTSCEEECCTTTCTTHHHHHHHH
T ss_pred ---------------------H----HhhcCCEEEEEECCChhhHHHHHHHHHHHHhcCCeEEEEECCCccCHHHHHHHH
Confidence 0 01135999999999998654333332 1 1358999999999999999999
Q ss_pred HHHhCceEEEeCCCC-CCCCCCccEEeecCC------CCCCHHHHHHHHHHhHhhcC-cEeEEeccCCccCCcccCCCce
Q 018394 241 WEEMGLVRVYTKPQG-QQPDFTEPVVLSVDR------GGCTVEDFCNHIHRSLVKDV-KYVLVWGTSARHYPQHCGLGHV 312 (356)
Q Consensus 241 ~~~l~~i~~~~~~~~-~~p~~~~~~~~~~~r------~g~~v~~~a~~ih~~l~~~f-~~a~~wg~s~~~~~~~vg~~~~ 312 (356)
.+.+...+.+...+. -.+...+++.+.+.. .|..+++++...+-+-.+.+ +++..|....-. ..+ +++-
T Consensus 320 ~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~gv~--~~l-~~~g 396 (416)
T 1udx_A 320 HALVRSTPPPEMPKPVPRKEVQAGVEVVPVAEGVYEVRAPEVERYLARIKGDLMEAAGYLQEVFRRQGVE--AAL-RAKG 396 (416)
T ss_dssp HHHHHTSCCCCCCCCCC----CCCCEEEEEETTEEEEECHHHHHHHTTEEECTGGGHHHHHHHHHHTTHH--HHH-HTTT
T ss_pred HHHHHhcccccccccccccccCCCcEEEEcCCCeEEEeChHHHHHHHhcCCCCHHHHHHHHHHHHHCCHH--HHH-HHcC
Confidence 988765443221100 001111234442111 26677788777766666665 455566533111 111 5678
Q ss_pred eCCCCeEEEE
Q 018394 313 LQDEDVVQIV 322 (356)
Q Consensus 313 l~d~Dvv~i~ 322 (356)
+++||.|.|.
T Consensus 397 ~~~gd~v~i~ 406 (416)
T 1udx_A 397 VRAGDLVRIG 406 (416)
T ss_dssp CCTTCEEEET
T ss_pred CCCCCEEEEe
Confidence 8999999984
No 44
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=99.84 E-value=7e-21 Score=172.57 Aligned_cols=155 Identities=14% Similarity=0.152 Sum_probs=103.3
Q ss_pred CCCCeEEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCccccccccccccceEEEECCEeecccCccccccccccCcccc
Q 018394 8 AGEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRG 87 (356)
Q Consensus 8 ~~~s~~v~~~~g~~v~LvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~~D~pGl~~~~~~~~~~~ 87 (356)
.++||++.+ |++++|+||||||||||+++|+|...| ..|.|.++|. +. +.
T Consensus 25 ~~vsl~i~~--Ge~~~i~G~nGsGKSTLl~~l~Gl~~p-----------~~G~i~~~g~-i~------~v---------- 74 (229)
T 2pze_A 25 KDINFKIER--GQLLAVAGSTGAGKTSLLMMIMGELEP-----------SEGKIKHSGR-IS------FC---------- 74 (229)
T ss_dssp EEEEEEEET--TCEEEEECCTTSSHHHHHHHHTTSSCC-----------SEEEEEECSC-EE------EE----------
T ss_pred eeeEEEEcC--CCEEEEECCCCCCHHHHHHHHhCCCcC-----------CccEEEECCE-EE------EE----------
Confidence 578999999 889999999999999999999999876 7999999882 21 11
Q ss_pred ccccccc--cchhHHHHHHhcCChHHHHHHHHHHHHHccC-------------ccccccCcccccceecccee-------
Q 018394 88 RQVIAVS--KSSDIVLMVLDASKSEGHRQILTKELEAVGL-------------RLNKRPPQIYFKKKKTGGIS------- 145 (356)
Q Consensus 88 ~~~~~~~--~~~d~i~~v~d~~~~~~~~~~i~~~L~~~~i-------------~l~~~~~~lS~g~~qr~~ia------- 145 (356)
.|....+ ...+++.+.. .... ....+.++.+++ .+.+++.+||+||+||++||
T Consensus 75 ~q~~~~~~~tv~enl~~~~--~~~~---~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LSgGqkqrv~lAral~~~p 149 (229)
T 2pze_A 75 SQFSWIMPGTIKENIIFGV--SYDE---YRYRSVIKACQLEEDISKFAEKDNIVLGEGGITLSGGQRARISLARAVYKDA 149 (229)
T ss_dssp CSSCCCCSBCHHHHHHTTS--CCCH---HHHHHHHHHTTCHHHHTTSTTGGGSCBCTTCTTSCHHHHHHHHHHHHHHSCC
T ss_pred ecCCcccCCCHHHHhhccC--CcCh---HHHHHHHHHhCcHHHHHhCcccccccccCCCCcCCHHHHHHHHHHHHHhcCC
Confidence 1111111 1223332211 0011 112222333332 12334579999999999998
Q ss_pred --eeecCCCCCCCHHHHHHHHHHh-c---ccCcEEEEccCCCHHHHHHHHhccccccceEEEeecCCC
Q 018394 146 --FNSTLPLTHVDEKLCYQILHEY-K---IHNAEVLFREDATVDDLIDVIEGNRKYMKCVYVYNKIDV 207 (356)
Q Consensus 146 --l~~DEp~~~LD~~~~~~il~~l-~---~~~~~i~~thd~~~~~~~~~i~~~~~~~p~i~v~NK~Dl 207 (356)
+++||||++||+.....+++.+ . .+.+++++||+.+.... +..++++++.-+
T Consensus 150 ~lllLDEPts~LD~~~~~~i~~~l~~~~~~~~tvi~vtH~~~~~~~----------~d~v~~l~~G~i 207 (229)
T 2pze_A 150 DLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTSKMEHLKK----------ADKILILHEGSS 207 (229)
T ss_dssp SEEEEESTTTTSCHHHHHHHHHHCCCCCTTTSEEEEECCCHHHHHH----------CSEEEEEETTEE
T ss_pred CEEEEECcccCCCHHHHHHHHHHHHHHhhCCCEEEEEcCChHHHHh----------CCEEEEEECCEE
Confidence 9999999999999988887753 2 24589999999643221 356777765543
No 45
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=99.83 E-value=7.2e-21 Score=173.40 Aligned_cols=157 Identities=15% Similarity=0.210 Sum_probs=105.1
Q ss_pred CCCCeEEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCccccccccccccceEEEECCEeecccCccccccccccCcccc
Q 018394 8 AGEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRG 87 (356)
Q Consensus 8 ~~~s~~v~~~~g~~v~LvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~~D~pGl~~~~~~~~~~~ 87 (356)
.++||++.+ |++++|+||||||||||+++|+|...| ..|.|.++|. +. +.
T Consensus 22 ~~vsl~i~~--Ge~~~i~G~nGsGKSTLl~~l~Gl~~p-----------~~G~I~~~g~-i~------~v---------- 71 (237)
T 2cbz_A 22 NGITFSIPE--GALVAVVGQVGCGKSSLLSALLAEMDK-----------VEGHVAIKGS-VA------YV---------- 71 (237)
T ss_dssp EEEEEEECT--TCEEEEECSTTSSHHHHHHHHTTCSEE-----------EEEEEEECSC-EE------EE----------
T ss_pred eeeEEEECC--CCEEEEECCCCCCHHHHHHHHhcCCCC-----------CCceEEECCE-EE------EE----------
Confidence 578999999 889999999999999999999999866 7999999883 21 11
Q ss_pred ccccc--cccchhHHHHHHhcCChHHHHHHHHHH---HHHccC-------ccccccCcccccceecccee---------e
Q 018394 88 RQVIA--VSKSSDIVLMVLDASKSEGHRQILTKE---LEAVGL-------RLNKRPPQIYFKKKKTGGIS---------F 146 (356)
Q Consensus 88 ~~~~~--~~~~~d~i~~v~d~~~~~~~~~~i~~~---L~~~~i-------~l~~~~~~lS~g~~qr~~ia---------l 146 (356)
.|... .....+.+.+.... .. ...+.+.+. ++.+++ .+++++.+||+||+||++|| +
T Consensus 72 ~Q~~~~~~~tv~enl~~~~~~-~~-~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LSgGqkqRv~lAraL~~~p~ll 149 (237)
T 2cbz_A 72 PQQAWIQNDSLRENILFGCQL-EE-PYYRSVIQACALLPDLEILPSGDRTEIGEKGVNLSGGQKQRVSLARAVYSNADIY 149 (237)
T ss_dssp CSSCCCCSEEHHHHHHTTSCC-CT-THHHHHHHHTTCHHHHTTSTTGGGSEESTTSBCCCHHHHHHHHHHHHHHHCCSEE
T ss_pred cCCCcCCCcCHHHHhhCcccc-CH-HHHHHHHHHHhhHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHhcCCCEE
Confidence 11110 11223333321111 11 111111111 222222 24678899999999999998 9
Q ss_pred eecCCCCCCCHHHHHHHHHHhc------ccCcEEEEccCCCHHHHHHHHhccccccceEEEeecCC
Q 018394 147 NSTLPLTHVDEKLCYQILHEYK------IHNAEVLFREDATVDDLIDVIEGNRKYMKCVYVYNKID 206 (356)
Q Consensus 147 ~~DEp~~~LD~~~~~~il~~l~------~~~~~i~~thd~~~~~~~~~i~~~~~~~p~i~v~NK~D 206 (356)
++||||++||+.....+++.+. .+.++|++|||.+.... +..++++++.-
T Consensus 150 lLDEPts~LD~~~~~~i~~~l~~~~~~~~~~tviivtH~~~~~~~----------~d~v~~l~~G~ 205 (237)
T 2cbz_A 150 LFDDPLSAVDAHVGKHIFENVIGPKGMLKNKTRILVTHSMSYLPQ----------VDVIIVMSGGK 205 (237)
T ss_dssp EEESTTTTSCHHHHHHHHHHTTSTTSTTTTSEEEEECSCSTTGGG----------SSEEEEEETTE
T ss_pred EEeCcccccCHHHHHHHHHHHHHHHhhcCCCEEEEEecChHHHHh----------CCEEEEEeCCE
Confidence 9999999999998877777662 24589999999865332 35666766543
No 46
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=99.83 E-value=4.4e-21 Score=196.33 Aligned_cols=171 Identities=13% Similarity=0.113 Sum_probs=120.4
Q ss_pred CCCCeEEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCccccccccccccceEEEECCEeecccCccccccccccCcccc
Q 018394 8 AGEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRG 87 (356)
Q Consensus 8 ~~~s~~v~~~~g~~v~LvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~~D~pGl~~~~~~~~~~~ 87 (356)
+++||++++ |+.++|+||||||||||+++|+|...| ..|.|.++|.++.-.+...+ ...+++.
T Consensus 360 ~~v~~~i~~--G~~~~ivG~sGsGKSTLl~~l~g~~~p-----------~~G~i~~~g~~~~~~~~~~~----~~~i~~v 422 (582)
T 3b60_A 360 RNINLKIPA--GKTVALVGRSGSGKSTIASLITRFYDI-----------DEGHILMDGHDLREYTLASL----RNQVALV 422 (582)
T ss_dssp EEEEEEECT--TCEEEEEECTTSSHHHHHHHHTTTTCC-----------SEEEEEETTEETTTBCHHHH----HHTEEEE
T ss_pred cceeEEEcC--CCEEEEECCCCCCHHHHHHHHhhccCC-----------CCCeEEECCEEccccCHHHH----HhhCeEE
Confidence 578999999 889999999999999999999999876 89999999998865443322 1234555
Q ss_pred ccccccccc--hhHHHHHHhcCChHHHHHHHHHHHHHccC--c-----------cccccCcccccceecccee-------
Q 018394 88 RQVIAVSKS--SDIVLMVLDASKSEGHRQILTKELEAVGL--R-----------LNKRPPQIYFKKKKTGGIS------- 145 (356)
Q Consensus 88 ~~~~~~~~~--~d~i~~v~d~~~~~~~~~~i~~~L~~~~i--~-----------l~~~~~~lS~g~~qr~~ia------- 145 (356)
.|....+.. .|++.+. ..+....+.+.+.++.+++ . +.....+||+||+||++||
T Consensus 423 ~Q~~~l~~~tv~eni~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~p~g~~~~~~~~~~~LSgGq~qrl~iAral~~~p 499 (582)
T 3b60_A 423 SQNVHLFNDTVANNIAYA---RTEEYSREQIEEAARMAYAMDFINKMDNGLDTIIGENGVLLSGGQRQRIAIARALLRDS 499 (582)
T ss_dssp CSSCCCCSSBHHHHHHTT---TTSCCCHHHHHHHHHTTTCHHHHHHSTTGGGSBCCTTSCSSCHHHHHHHHHHHHHHHCC
T ss_pred ccCCcCCCCCHHHHHhcc---CCCCCCHHHHHHHHHHcCCHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHHhCC
Confidence 565444432 3444332 1011123445666666665 2 3345579999999999998
Q ss_pred --eeecCCCCCCCHHHHHHH---HHHhcccCcEEEEccCCCHHHHHHHHhccccccceEEEeecCCCC
Q 018394 146 --FNSTLPLTHVDEKLCYQI---LHEYKIHNAEVLFREDATVDDLIDVIEGNRKYMKCVYVYNKIDVI 208 (356)
Q Consensus 146 --l~~DEp~~~LD~~~~~~i---l~~l~~~~~~i~~thd~~~~~~~~~i~~~~~~~p~i~v~NK~Dl~ 208 (356)
+++||||++||+.....+ ++.+..+.|++++||+.+... .++.++++++.-+.
T Consensus 500 ~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~----------~~d~i~~l~~G~i~ 557 (582)
T 3b60_A 500 PILILDEATSALDTESERAIQAALDELQKNRTSLVIAHRLSTIE----------QADEIVVVEDGIIV 557 (582)
T ss_dssp SEEEEETTTSSCCHHHHHHHHHHHHHHHTTSEEEEECSCGGGTT----------TCSEEEEEETTEEE
T ss_pred CEEEEECccccCCHHHHHHHHHHHHHHhCCCEEEEEeccHHHHH----------hCCEEEEEECCEEE
Confidence 999999999999885544 444444669999999975322 24678888765443
No 47
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=99.82 E-value=7.7e-21 Score=194.36 Aligned_cols=170 Identities=13% Similarity=0.118 Sum_probs=120.4
Q ss_pred CCCCeEEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCccccccccccccceEEEECCEeecccCccccccccccCcccc
Q 018394 8 AGEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRG 87 (356)
Q Consensus 8 ~~~s~~v~~~~g~~v~LvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~~D~pGl~~~~~~~~~~~ 87 (356)
+++||++++ |+.+||+||||||||||+++|+|...| .+|.|.++|.++.-.+...++ ..+++.
T Consensus 358 ~~isl~i~~--G~~~~ivG~sGsGKSTll~~l~g~~~p-----------~~G~i~~~g~~~~~~~~~~~r----~~i~~v 420 (578)
T 4a82_A 358 KDINLSIEK--GETVAFVGMSGGGKSTLINLIPRFYDV-----------TSGQILIDGHNIKDFLTGSLR----NQIGLV 420 (578)
T ss_dssp EEEEEEECT--TCEEEEECSTTSSHHHHHTTTTTSSCC-----------SEEEEEETTEEGGGSCHHHHH----HTEEEE
T ss_pred eeeEEEECC--CCEEEEECCCCChHHHHHHHHhcCCCC-----------CCcEEEECCEEhhhCCHHHHh----hheEEE
Confidence 578999999 889999999999999999999999876 899999999998766543332 235555
Q ss_pred ccccccccc--hhHHHHHHhcCChHHHHHHHHHHHHHccC-------------ccccccCcccccceecccee-------
Q 018394 88 RQVIAVSKS--SDIVLMVLDASKSEGHRQILTKELEAVGL-------------RLNKRPPQIYFKKKKTGGIS------- 145 (356)
Q Consensus 88 ~~~~~~~~~--~d~i~~v~d~~~~~~~~~~i~~~L~~~~i-------------~l~~~~~~lS~g~~qr~~ia------- 145 (356)
.|....+.. .|++.+ .... ...+.+.+.++..++ .+..+..+||+||+||++||
T Consensus 421 ~Q~~~l~~~tv~eni~~---~~~~-~~~~~~~~~~~~~~~~~~~~~lp~g~~t~~~~~g~~LSgGq~Qrv~lAral~~~p 496 (578)
T 4a82_A 421 QQDNILFSDTVKENILL---GRPT-ATDEEVVEAAKMANAHDFIMNLPQGYDTEVGERGVKLSGGQKQRLSIARIFLNNP 496 (578)
T ss_dssp CSSCCCCSSBHHHHHGG---GCSS-CCHHHHHHHHHHTTCHHHHHTSTTGGGCBCCGGGTTSCHHHHHHHHHHHHHHHCC
T ss_pred eCCCccCcccHHHHHhc---CCCC-CCHHHHHHHHHHhCcHHHHHhCcchhhhhhccCCCcCCHHHHHHHHHHHHHHcCC
Confidence 665544433 333322 2111 112334455555444 23344568999999999998
Q ss_pred --eeecCCCCCCCHHHHHH---HHHHhcccCcEEEEccCCCHHHHHHHHhccccccceEEEeecCCCC
Q 018394 146 --FNSTLPLTHVDEKLCYQ---ILHEYKIHNAEVLFREDATVDDLIDVIEGNRKYMKCVYVYNKIDVI 208 (356)
Q Consensus 146 --l~~DEp~~~LD~~~~~~---il~~l~~~~~~i~~thd~~~~~~~~~i~~~~~~~p~i~v~NK~Dl~ 208 (356)
+++||||++||+..... .++.+..+.|++++||+.+... .++.++++++.-+.
T Consensus 497 ~illlDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~----------~~d~i~~l~~G~i~ 554 (578)
T 4a82_A 497 PILILDEATSALDLESESIIQEALDVLSKDRTTLIVAHRLSTIT----------HADKIVVIENGHIV 554 (578)
T ss_dssp SEEEEESTTTTCCHHHHHHHHHHHHHHTTTSEEEEECSSGGGTT----------TCSEEEEEETTEEE
T ss_pred CEEEEECccccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHH----------cCCEEEEEECCEEE
Confidence 99999999999987444 4445555679999999976422 25778888876544
No 48
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=99.82 E-value=8.4e-21 Score=194.76 Aligned_cols=170 Identities=12% Similarity=0.120 Sum_probs=119.5
Q ss_pred CCCCeEEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCccccccccccccceEEEECCEeecccCccccccccccCcccc
Q 018394 8 AGEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRG 87 (356)
Q Consensus 8 ~~~s~~v~~~~g~~v~LvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~~D~pGl~~~~~~~~~~~ 87 (356)
+++||++++ |+.+||+||||||||||+++|+|...| .+|.|.++|.++.-++...++ ..+++.
T Consensus 372 ~~isl~i~~--G~~~~ivG~sGsGKSTll~~l~g~~~p-----------~~G~i~~~g~~i~~~~~~~~r----~~i~~v 434 (598)
T 3qf4_B 372 KDITFHIKP--GQKVALVGPTGSGKTTIVNLLMRFYDV-----------DRGQILVDGIDIRKIKRSSLR----SSIGIV 434 (598)
T ss_dssp CSEEEECCT--TCEEEEECCTTSSTTHHHHHHTTSSCC-----------SEEEEEETTEEGGGSCHHHHH----HHEEEE
T ss_pred cceEEEEcC--CCEEEEECCCCCcHHHHHHHHhcCcCC-----------CCeEEEECCEEhhhCCHHHHH----hceEEE
Confidence 688999999 889999999999999999999999876 899999999998766543332 234555
Q ss_pred ccccccccc--hhHHHHHHhcCChHHHHHHHHHHHHHccC--cccc-----------ccCcccccceecccee-------
Q 018394 88 RQVIAVSKS--SDIVLMVLDASKSEGHRQILTKELEAVGL--RLNK-----------RPPQIYFKKKKTGGIS------- 145 (356)
Q Consensus 88 ~~~~~~~~~--~d~i~~v~d~~~~~~~~~~i~~~L~~~~i--~l~~-----------~~~~lS~g~~qr~~ia------- 145 (356)
.|....+.. .+++.+ ... ....+.+.+.++..++ .+++ ...+||+||+||++||
T Consensus 435 ~Q~~~lf~~tv~eni~~---~~~-~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGq~Qrv~iAral~~~p 510 (598)
T 3qf4_B 435 LQDTILFSTTVKENLKY---GNP-GATDEEIKEAAKLTHSDHFIKHLPEGYETVLTDNGEDLSQGQRQLLAITRAFLANP 510 (598)
T ss_dssp CTTCCCCSSBHHHHHHS---SST-TCCTTHHHHHTTTTTCHHHHHTSTTGGGCBCHHHHTTSCHHHHHHHHHHHHHHTCC
T ss_pred eCCCccccccHHHHHhc---CCC-CCCHHHHHHHHHHhCCHHHHHhccccccchhcCCCCCCCHHHHHHHHHHHHHhcCC
Confidence 555444432 333332 111 1111234445544444 2232 3368999999999998
Q ss_pred --eeecCCCCCCCHHHHHHH---HHHhcccCcEEEEccCCCHHHHHHHHhccccccceEEEeecCCCC
Q 018394 146 --FNSTLPLTHVDEKLCYQI---LHEYKIHNAEVLFREDATVDDLIDVIEGNRKYMKCVYVYNKIDVI 208 (356)
Q Consensus 146 --l~~DEp~~~LD~~~~~~i---l~~l~~~~~~i~~thd~~~~~~~~~i~~~~~~~p~i~v~NK~Dl~ 208 (356)
+++||||++||+.....+ +..+..+.|++++||+.+.... ++.++++++.-+.
T Consensus 511 ~illlDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~----------~d~i~~l~~G~i~ 568 (598)
T 3qf4_B 511 KILILDEATSNVDTKTEKSIQAAMWKLMEGKTSIIIAHRLNTIKN----------ADLIIVLRDGEIV 568 (598)
T ss_dssp SEEEECCCCTTCCHHHHHHHHHHHHHHHTTSEEEEESCCTTHHHH----------CSEEEEECSSSEE
T ss_pred CEEEEECCccCCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHc----------CCEEEEEECCEEE
Confidence 999999999999875444 4444456799999999875432 4778888876554
No 49
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=99.82 E-value=1.3e-20 Score=193.28 Aligned_cols=171 Identities=15% Similarity=0.113 Sum_probs=118.9
Q ss_pred CCCCeEEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCccccccccccccceEEEECCEeecccCccccccccccCcccc
Q 018394 8 AGEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRG 87 (356)
Q Consensus 8 ~~~s~~v~~~~g~~v~LvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~~D~pGl~~~~~~~~~~~ 87 (356)
+++||++++ |+.+||+||||||||||+++|+|...| .+|.|.++|.++.-.+...+ ...+++.
T Consensus 361 ~~isl~i~~--G~~~~ivG~sGsGKSTLl~~l~g~~~p-----------~~G~i~~~g~~i~~~~~~~~----~~~i~~v 423 (595)
T 2yl4_A 361 QDFSLSIPS--GSVTALVGPSGSGKSTVLSLLLRLYDP-----------ASGTISLDGHDIRQLNPVWL----RSKIGTV 423 (595)
T ss_dssp EEEEEEECT--TCEEEEECCTTSSSTHHHHHHTTSSCC-----------SEEEEEETTEETTTBCHHHH----HHSEEEE
T ss_pred cceEEEEcC--CCEEEEECCCCCCHHHHHHHHhcCcCC-----------CCcEEEECCEEhhhCCHHHH----HhceEEE
Confidence 478999999 889999999999999999999999876 89999999998865443322 1234555
Q ss_pred ccccccccc--hhHHHHHHhcCChHHHHHHHHHHHHHccC--c-----------cccccCcccccceecccee-------
Q 018394 88 RQVIAVSKS--SDIVLMVLDASKSEGHRQILTKELEAVGL--R-----------LNKRPPQIYFKKKKTGGIS------- 145 (356)
Q Consensus 88 ~~~~~~~~~--~d~i~~v~d~~~~~~~~~~i~~~L~~~~i--~-----------l~~~~~~lS~g~~qr~~ia------- 145 (356)
.|....+.. .+++.+..... .....+.+.+.++.+++ . +..+..+||+||+||++||
T Consensus 424 ~Q~~~l~~~tv~eni~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~l~~g~~~~~~~~~~~LSgGq~qrv~iAral~~~p 502 (595)
T 2yl4_A 424 SQEPILFSCSIAENIAYGADDP-SSVTAEEIQRVAEVANAVAFIRNFPQGFNTVVGEKGVLLSGGQKQRIAIARALLKNP 502 (595)
T ss_dssp CSSCCCCSSBHHHHHHTTSSST-TTSCHHHHHHHHHHTTCHHHHHTSSSGGGCBCSSSSCCCCHHHHHHHHHHHHHHHCC
T ss_pred ccCCcccCCCHHHHHhhcCCCc-cccCHHHHHHHHHHcCCHHHHHhCcccccccccCCCCcCCHHHHHHHHHHHHHHcCC
Confidence 565444432 33433321110 01223456677777765 2 2233478999999999998
Q ss_pred --eeecCCCCCCCHHHHHHH---HHHhcccCcEEEEccCCCHHHHHHHHhccccccceEEEeecCC
Q 018394 146 --FNSTLPLTHVDEKLCYQI---LHEYKIHNAEVLFREDATVDDLIDVIEGNRKYMKCVYVYNKID 206 (356)
Q Consensus 146 --l~~DEp~~~LD~~~~~~i---l~~l~~~~~~i~~thd~~~~~~~~~i~~~~~~~p~i~v~NK~D 206 (356)
+++||||++||+.....+ ++.+..+.|++++||+.+.... ++.++++++.-
T Consensus 503 ~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~~----------~d~i~~l~~G~ 558 (595)
T 2yl4_A 503 KILLLDEATSALDAENEYLVQEALDRLMDGRTVLVIAHRLSTIKN----------ANMVAVLDQGK 558 (595)
T ss_dssp SEEEEECCCSSCCHHHHHHHHHHHHHHHTTSEEEEECCCHHHHHH----------SSEEEEEETTE
T ss_pred CEEEEECcccCCCHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHc----------CCEEEEEECCE
Confidence 999999999999885554 4444446799999999654322 36677776543
No 50
>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8
Probab=99.81 E-value=2.9e-21 Score=185.01 Aligned_cols=162 Identities=29% Similarity=0.429 Sum_probs=122.8
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHcCCCCccccccccccccceEEEECC-EeecccCccccccccccCccccccccccccch
Q 018394 19 HGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYND-TKIQLLDLPGIIEGASEGKGRGRQVIAVSKSS 97 (356)
Q Consensus 19 g~~v~LvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g-~~i~~~D~pGl~~~~~~~~~~~~~~~~~~~~~ 97 (356)
-..|+|+|.||||||||+|+|++....+++|||||++|+.|.+.+++ ..+.++||||+...++...++..+++..++.+
T Consensus 158 la~V~lvG~~nvGKSTLln~L~~~~~~i~~~~ftTl~p~~g~v~~~~~~~~~l~DtPG~i~~a~~~~~l~~~fl~~i~~~ 237 (342)
T 1lnz_A 158 LADVGLVGFPSVGKSTLLSVVSSAKPKIADYHFTTLVPNLGMVETDDGRSFVMADLPGLIEGAHQGVGLGHQFLRHIERT 237 (342)
T ss_dssp CCCEEEESSTTSSHHHHHHHSEEECCEESSTTSSCCCCCEEEEECSSSCEEEEEEHHHHHHHTTCTTTTHHHHHHHHHHC
T ss_pred cCeeeeeCCCCCCHHHHHHHHHcCCCccccCCccccCceEEEEEeCCCceEEEecCCCCcccccccchhHHHHHHHHHhc
Confidence 35799999999999999999999888889999999999999999986 88999999999877666666667777666778
Q ss_pred hHHHHHHhcCC-----hHHHHHHHHHHHHHccCccccccCcccccceeccceeeeecCCCCCCCHHHHHHHHHHhcccCc
Q 018394 98 DIVLMVLDASK-----SEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNA 172 (356)
Q Consensus 98 d~i~~v~d~~~-----~~~~~~~i~~~L~~~~i~l~~~~~~lS~g~~qr~~ial~~DEp~~~LD~~~~~~il~~l~~~~~ 172 (356)
+++++|+|++. +..+.+.+..+|..+.
T Consensus 238 d~ll~VvD~s~~~~~~~~~~~~~~~~eL~~~~------------------------------------------------ 269 (342)
T 1lnz_A 238 RVIVHVIDMSGLEGRDPYDDYLTINQELSEYN------------------------------------------------ 269 (342)
T ss_dssp CEEEEEEESSCSSCCCHHHHHHHHHHHHHHSC------------------------------------------------
T ss_pred cEEEEEEECCcccccChHHHHHHHHHHHHHhh------------------------------------------------
Confidence 88888888754 1122222222221110
Q ss_pred EEEEccCCCHHHHHHHHhccccccceEEEeecCCCCChhh-HHHHhc-C---CCEEEeccccccchHHHHHHHHHHhCc
Q 018394 173 EVLFREDATVDDLIDVIEGNRKYMKCVYVYNKIDVIGIDD-VDKLAR-Q---PNSVVISCNLKLNLDRLLARMWEEMGL 246 (356)
Q Consensus 173 ~i~~thd~~~~~~~~~i~~~~~~~p~i~v~NK~Dl~~~~~-~~~l~~-~---~~~i~iSa~~~~~l~~L~~~i~~~l~~ 246 (356)
.....+|+++|+||+|+....+ .+.+.+ . .+++++||+++.|+++|.+.|.+.+..
T Consensus 270 ------------------~~l~~~p~ilV~NK~Dl~~~~e~~~~l~~~l~~~~~v~~iSA~tg~gi~eL~~~l~~~l~~ 330 (342)
T 1lnz_A 270 ------------------LRLTERPQIIVANKMDMPEAAENLEAFKEKLTDDYPVFPISAVTREGLRELLFEVANQLEN 330 (342)
T ss_dssp ------------------SSTTTSCBCBEEECTTSTTHHHHHHHHHHHCCSCCCBCCCSSCCSSTTHHHHHHHHHHHTS
T ss_pred ------------------hhhcCCCEEEEEECccCCCCHHHHHHHHHHhhcCCCEEEEECCCCcCHHHHHHHHHHHHhh
Confidence 0012469999999999986532 444432 1 368899999999999999999998864
No 51
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=99.81 E-value=2.9e-20 Score=174.18 Aligned_cols=154 Identities=12% Similarity=0.138 Sum_probs=100.7
Q ss_pred CCCCeEEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCccccccccccccceEEEECCEeecccCccccccccccCcccc
Q 018394 8 AGEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRG 87 (356)
Q Consensus 8 ~~~s~~v~~~~g~~v~LvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~~D~pGl~~~~~~~~~~~ 87 (356)
.++||++.+ |++++|+|||||||||||++|+|...| ..|.|.++|. +. +.
T Consensus 55 ~~isl~i~~--Ge~~~i~G~NGsGKSTLlk~l~Gl~~p-----------~~G~I~~~g~-i~------~v---------- 104 (290)
T 2bbs_A 55 KDINFKIER--GQLLAVAGSTGAGKTSLLMMIMGELEP-----------SEGKIKHSGR-IS------FC---------- 104 (290)
T ss_dssp EEEEEEECT--TCEEEEEESTTSSHHHHHHHHTTSSCE-----------EEEEEECCSC-EE------EE----------
T ss_pred EeeEEEEcC--CCEEEEECCCCCcHHHHHHHHhcCCCC-----------CCcEEEECCE-EE------EE----------
Confidence 478899998 889999999999999999999999876 7899999872 21 11
Q ss_pred ccccccc--cchhHHHHHHhcCChHHHHHHHHHHHHHccC-------------ccccccCcccccceecccee-------
Q 018394 88 RQVIAVS--KSSDIVLMVLDASKSEGHRQILTKELEAVGL-------------RLNKRPPQIYFKKKKTGGIS------- 145 (356)
Q Consensus 88 ~~~~~~~--~~~d~i~~v~d~~~~~~~~~~i~~~L~~~~i-------------~l~~~~~~lS~g~~qr~~ia------- 145 (356)
.|....+ ...+++. ...... ..+.+.++.+++ .+.+.+.+||+||+||++||
T Consensus 105 ~Q~~~l~~~tv~enl~----~~~~~~--~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~LSgGq~QRv~lAraL~~~p 178 (290)
T 2bbs_A 105 SQNSWIMPGTIKENII----GVSYDE--YRYRSVIKACQLEEDISKFAEKDNIVLGEGGITLSGGQRARISLARAVYKDA 178 (290)
T ss_dssp CSSCCCCSSBHHHHHH----TTCCCH--HHHHHHHHHTTCHHHHHTSTTGGGCBC----CCCCHHHHHHHHHHHHHHSCC
T ss_pred eCCCccCcccHHHHhh----Ccccch--HHHHHHHHHhChHHHHHhccccccchhcCccCcCCHHHHHHHHHHHHHHCCC
Confidence 1111111 1123322 111000 112223333333 12334579999999999998
Q ss_pred --eeecCCCCCCCHHHHHHHHHHh-c---ccCcEEEEccCCCHHHHHHHHhccccccceEEEeecCCC
Q 018394 146 --FNSTLPLTHVDEKLCYQILHEY-K---IHNAEVLFREDATVDDLIDVIEGNRKYMKCVYVYNKIDV 207 (356)
Q Consensus 146 --l~~DEp~~~LD~~~~~~il~~l-~---~~~~~i~~thd~~~~~~~~~i~~~~~~~p~i~v~NK~Dl 207 (356)
+++||||++||+.....+++.+ . .+.+++++||+...... +..++++++.-+
T Consensus 179 ~lllLDEPts~LD~~~~~~i~~~ll~~~~~~~tviivtHd~~~~~~----------~d~i~~l~~G~i 236 (290)
T 2bbs_A 179 DLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTSKMEHLKK----------ADKILILHEGSS 236 (290)
T ss_dssp SEEEEESTTTTCCHHHHHHHHHHCCCCCTTTSEEEEECCCHHHHHH----------SSEEEEEETTEE
T ss_pred CEEEEECCcccCCHHHHHHHHHHHHHHhhCCCEEEEEecCHHHHHc----------CCEEEEEECCeE
Confidence 9999999999999988887753 2 24589999999643221 356677765433
No 52
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=99.81 E-value=1.3e-20 Score=192.83 Aligned_cols=172 Identities=16% Similarity=0.147 Sum_probs=119.2
Q ss_pred CCCCeEEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCccccccccccccceEEEECCEeecccCccccccccccCcccc
Q 018394 8 AGEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRG 87 (356)
Q Consensus 8 ~~~s~~v~~~~g~~v~LvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~~D~pGl~~~~~~~~~~~ 87 (356)
+++||++++ |+.++|+||||||||||+++|+|...| .+|.|.++|.++.-++...++ ..+++.
T Consensus 360 ~~isl~i~~--Ge~~~ivG~sGsGKSTll~~l~g~~~~-----------~~G~i~i~g~~i~~~~~~~~r----~~i~~v 422 (587)
T 3qf4_A 360 SGVNFSVKP--GSLVAVLGETGSGKSTLMNLIPRLIDP-----------ERGRVEVDELDVRTVKLKDLR----GHISAV 422 (587)
T ss_dssp EEEEEEECT--TCEEEEECSSSSSHHHHHHTTTTSSCC-----------SEEEEEESSSBGGGBCHHHHH----HHEEEE
T ss_pred eceEEEEcC--CCEEEEECCCCCCHHHHHHHHhCCccC-----------CCcEEEECCEEcccCCHHHHH----hheEEE
Confidence 588999999 889999999999999999999999876 899999999988766544332 234555
Q ss_pred ccccccccchhHHHHHHhcCChHHHHHHHHHHHHHc-----------cC--ccccccCcccccceecccee---------
Q 018394 88 RQVIAVSKSSDIVLMVLDASKSEGHRQILTKELEAV-----------GL--RLNKRPPQIYFKKKKTGGIS--------- 145 (356)
Q Consensus 88 ~~~~~~~~~~d~i~~v~d~~~~~~~~~~i~~~L~~~-----------~i--~l~~~~~~lS~g~~qr~~ia--------- 145 (356)
.|....+.. .+...+.-.... ...+.+.+.++.. |+ .+.++..+||+||+||++||
T Consensus 423 ~Q~~~lf~~-tv~eni~~~~~~-~~~~~~~~~~~~~~~~~~i~~l~~g~~~~~~~~~~~LSgGqrQrv~lARal~~~p~i 500 (587)
T 3qf4_A 423 PQETVLFSG-TIKENLKWGRED-ATDDEIVEAAKIAQIHDFIISLPEGYDSRVERGGRNFSGGQKQRLSIARALVKKPKV 500 (587)
T ss_dssp CSSCCCCSE-EHHHHHTTTCSS-CCHHHHHHHHHHTTCHHHHHTSSSGGGCEECSSSCSSCHHHHHHHHHHHHHHTCCSE
T ss_pred CCCCcCcCc-cHHHHHhccCCC-CCHHHHHHHHHHhCcHHHHHhcccchhhHhcCCCCCcCHHHHHHHHHHHHHHcCCCE
Confidence 555544432 222222111111 1112233333332 33 45677789999999999998
Q ss_pred eeecCCCCCCCHHHHHHHH---HHhcccCcEEEEccCCCHHHHHHHHhccccccceEEEeecCCCC
Q 018394 146 FNSTLPLTHVDEKLCYQIL---HEYKIHNAEVLFREDATVDDLIDVIEGNRKYMKCVYVYNKIDVI 208 (356)
Q Consensus 146 l~~DEp~~~LD~~~~~~il---~~l~~~~~~i~~thd~~~~~~~~~i~~~~~~~p~i~v~NK~Dl~ 208 (356)
+++||||++||+.....++ +.+..+.|++++||+.+... .++.++++++.-+.
T Consensus 501 lllDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~~~----------~~d~i~vl~~G~i~ 556 (587)
T 3qf4_A 501 LILDDCTSSVDPITEKRILDGLKRYTKGCTTFIITQKIPTAL----------LADKILVLHEGKVA 556 (587)
T ss_dssp EEEESCCTTSCHHHHHHHHHHHHHHSTTCEEEEEESCHHHHT----------TSSEEEEEETTEEE
T ss_pred EEEECCcccCCHHHHHHHHHHHHHhCCCCEEEEEecChHHHH----------hCCEEEEEECCEEE
Confidence 9999999999998855544 44445679999999975322 35778888876554
No 53
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=99.79 E-value=1.1e-19 Score=183.83 Aligned_cols=158 Identities=11% Similarity=0.106 Sum_probs=107.9
Q ss_pred CeEEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCccccccccccccceEEEECCEeecccCccccccccccCccccccc
Q 018394 11 GFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQV 90 (356)
Q Consensus 11 s~~v~~~~g~~v~LvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~~D~pGl~~~~~~~~~~~~~~ 90 (356)
+|++.+ |+++||+|+||||||||+++|+|...| ..|.|.+++..+..+.. ... ..+
T Consensus 288 ~~~i~~--Gei~~i~G~nGsGKSTLl~~l~Gl~~p-----------~~G~i~~~~~~i~~~~q---------~~~--~~~ 343 (538)
T 3ozx_A 288 NGEAKE--GEIIGILGPNGIGKTTFARILVGEITA-----------DEGSVTPEKQILSYKPQ---------RIF--PNY 343 (538)
T ss_dssp CEEEET--TCEEEEECCTTSSHHHHHHHHTTSSCC-----------SBCCEESSCCCEEEECS---------SCC--CCC
T ss_pred cceECC--CCEEEEECCCCCCHHHHHHHHhCCCCC-----------CCcEEEECCeeeEeech---------hcc--ccc
Confidence 455677 889999999999999999999999877 78998877655433210 000 000
Q ss_pred cccccchhHHHHHHhcCChHHHHHHHHHHHHHccC--ccccccCcccccceecccee---------eeecCCCCCCCHHH
Q 018394 91 IAVSKSSDIVLMVLDASKSEGHRQILTKELEAVGL--RLNKRPPQIYFKKKKTGGIS---------FNSTLPLTHVDEKL 159 (356)
Q Consensus 91 ~~~~~~~d~i~~v~d~~~~~~~~~~i~~~L~~~~i--~l~~~~~~lS~g~~qr~~ia---------l~~DEp~~~LD~~~ 159 (356)
.....+++........ ......+.++|+.+++ .+++++.+||+||+||++|| +++||||++||+..
T Consensus 344 --~~tv~~~l~~~~~~~~-~~~~~~~~~~l~~~~l~~~~~~~~~~LSGGq~QRv~iAraL~~~p~lLlLDEPT~gLD~~~ 420 (538)
T 3ozx_A 344 --DGTVQQYLENASKDAL-STSSWFFEEVTKRLNLHRLLESNVNDLSGGELQKLYIAATLAKEADLYVLDQPSSYLDVEE 420 (538)
T ss_dssp --SSBHHHHHHHHCSSTT-CTTSHHHHHTTTTTTGGGCTTSBGGGCCHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHH
T ss_pred --CCCHHHHHHHhhhhcc-chhHHHHHHHHHHcCCHHHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHH
Confidence 0111233322211110 0122346777888888 68899999999999999998 99999999999987
Q ss_pred HHH---HHHHhcc--cCcEEEEccCCCHHHHHHHHhccccccceEEEeec
Q 018394 160 CYQ---ILHEYKI--HNAEVLFREDATVDDLIDVIEGNRKYMKCVYVYNK 204 (356)
Q Consensus 160 ~~~---il~~l~~--~~~~i~~thd~~~~~~~~~i~~~~~~~p~i~v~NK 204 (356)
..+ +++.+.. +.+++++|||...... .+..+++++.
T Consensus 421 ~~~i~~~l~~l~~~~g~tvi~vsHdl~~~~~---------~aDri~vl~~ 461 (538)
T 3ozx_A 421 RYIVAKAIKRVTRERKAVTFIIDHDLSIHDY---------IADRIIVFKG 461 (538)
T ss_dssp HHHHHHHHHHHHHHTTCEEEEECSCHHHHHH---------HCSEEEEEEE
T ss_pred HHHHHHHHHHHHHhCCCEEEEEeCCHHHHHH---------hCCEEEEEeC
Confidence 554 4555532 4589999999765432 2467777763
No 54
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=99.78 E-value=1.1e-19 Score=175.57 Aligned_cols=162 Identities=27% Similarity=0.335 Sum_probs=101.3
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcCCCCccccccccccccceEEEECCEeecccCccccccccccC-ccccccccccccchh
Q 018394 20 GRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEG-KGRGRQVIAVSKSSD 98 (356)
Q Consensus 20 ~~v~LvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~~D~pGl~~~~~~~-~~~~~~~~~~~~~~d 98 (356)
..|+|+|+||||||||||+|+|....++++||||+|+..+.+.++|.++.++||||++...... +......+..+..+|
T Consensus 180 ~~V~lvG~~naGKSTLln~L~~~~~~~~~~~~~T~d~~~~~i~~~g~~v~l~DT~G~i~~lp~~lve~f~~tl~~~~~aD 259 (364)
T 2qtf_A 180 PSIGIVGYTNSGKTSLFNSLTGLTQKVDTKLFTTMSPKRYAIPINNRKIMLVDTVGFIRGIPPQIVDAFFVTLSEAKYSD 259 (364)
T ss_dssp CEEEEECBTTSSHHHHHHHHHCC-----------CCSCEEEEEETTEEEEEEECCCBCSSCCGGGHHHHHHHHHGGGGSS
T ss_pred cEEEEECCCCCCHHHHHHHHHCCCccccCCcccccCCEEEEEEECCEEEEEEeCCCchhcCCHHHHHHHHHHHHHHHhCC
Confidence 3599999999999999999999988889999999999999999999999999999975431111 111112233456678
Q ss_pred HHHHHHhcCChHH-HHHHHHHHHHHccCccccccCcccccceeccceeeeecCCCCCCCHHHHHHHHHHhcccCcEEEEc
Q 018394 99 IVLMVLDASKSEG-HRQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNAEVLFR 177 (356)
Q Consensus 99 ~i~~v~d~~~~~~-~~~~i~~~L~~~~i~l~~~~~~lS~g~~qr~~ial~~DEp~~~LD~~~~~~il~~l~~~~~~i~~t 177 (356)
++++++|.+.+.. ..+.+. .+.++++.+.
T Consensus 260 ~il~VvD~s~~~~~~~~~~~-----------------------------------------~~~~~L~~l~--------- 289 (364)
T 2qtf_A 260 ALILVIDSTFSENLLIETLQ-----------------------------------------SSFEILREIG--------- 289 (364)
T ss_dssp EEEEEEETTSCHHHHHHHHH-----------------------------------------HHHHHHHHHT---------
T ss_pred EEEEEEECCCCcchHHHHHH-----------------------------------------HHHHHHHHhC---------
Confidence 8888888765431 111110 1112222211
Q ss_pred cCCCHHHHHHHHhccccccceEEEeecCCCCChh--h----H----HHH-hcCCCEEEeccccccchHHHHHHHHHHhCc
Q 018394 178 EDATVDDLIDVIEGNRKYMKCVYVYNKIDVIGID--D----V----DKL-ARQPNSVVISCNLKLNLDRLLARMWEEMGL 246 (356)
Q Consensus 178 hd~~~~~~~~~i~~~~~~~p~i~v~NK~Dl~~~~--~----~----~~l-~~~~~~i~iSa~~~~~l~~L~~~i~~~l~~ 246 (356)
...+|+++|.||+|+.+.. . . ..+ ...++++++||+++.|+++|.+.|.+.+..
T Consensus 290 ---------------~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~l~~~l~~~~~~~~~~SA~~g~gi~~L~~~I~~~l~~ 354 (364)
T 2qtf_A 290 ---------------VSGKPILVTLNKIDKINGDLYKKLDLVEKLSKELYSPIFDVIPISALKRTNLELLRDKIYQLATQ 354 (364)
T ss_dssp ---------------CCSCCEEEEEECGGGCCSCHHHHHHHHHHHHHHHCSCEEEEEECBTTTTBSHHHHHHHHHHHHHH
T ss_pred ---------------cCCCCEEEEEECCCCCCchHHHHHHHHHHHHHHhcCCCCcEEEEECCCCcCHHHHHHHHHHHhcc
Confidence 1135999999999997532 1 1 111 111247899999999999999999887754
No 55
>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*
Probab=99.78 E-value=7.3e-20 Score=182.53 Aligned_cols=191 Identities=21% Similarity=0.176 Sum_probs=108.9
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHcCC-CCccccccccccccceEEEECCEeecccCccccccccccCccc-cccccccccc
Q 018394 19 HGRVALIGFPSVGKSTLLTLLTGTH-SEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGR-GRQVIAVSKS 96 (356)
Q Consensus 19 g~~v~LvG~~gaGKSTLln~L~g~~-~~vs~~p~TT~~~~~G~i~~~g~~i~~~D~pGl~~~~~~~~~~-~~~~~~~~~~ 96 (356)
+..|+|+|+||||||||+|+|++.. ..++++||||++.....+.++|.++.++||||+.......... .......++.
T Consensus 233 ~~kV~ivG~~nvGKSSLln~L~~~~~a~vs~~~gtT~d~~~~~i~~~g~~l~liDT~G~~~~~~~ve~~gi~~~~~~~~~ 312 (476)
T 3gee_A 233 GVSTVIAGKPNAGKSTLLNTLLGQERAIVSHMPGTTRDYIEECFIHDKTMFRLTDTAGLREAGEEIEHEGIRRSRMKMAE 312 (476)
T ss_dssp CEEEEEECCTTSSHHHHHHHCC------------------CEEEEETTEEEEEEC--------------------CCCSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCceEEEEEEEEEECCeEEEEEECCCCCcchhHHHHHHHHHHHhhccc
Confidence 4679999999999999999999986 5689999999999999999999999999999986522111010 1223345677
Q ss_pred hhHHHHHHhcCChHHHHHHHHHHHHHccCccccccCcccccceeccceeeeecCCCCCCCHHHHHHHHHHhcccCcEEEE
Q 018394 97 SDIVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNAEVLF 176 (356)
Q Consensus 97 ~d~i~~v~d~~~~~~~~~~i~~~L~~~~i~l~~~~~~lS~g~~qr~~ial~~DEp~~~LD~~~~~~il~~l~~~~~~i~~ 176 (356)
+|++++|+|.+.+....+ +. ...++++.
T Consensus 313 aD~vl~VvD~s~~~s~~~-~~-----------------------------------------~~~~~l~~---------- 340 (476)
T 3gee_A 313 ADLILYLLDLGTERLDDE-LT-----------------------------------------EIRELKAA---------- 340 (476)
T ss_dssp CSEEEEEEETTTCSSGGG-HH-----------------------------------------HHHHHHHH----------
T ss_pred CCEEEEEEECCCCcchhh-hH-----------------------------------------HHHHHHHh----------
Confidence 888888888765422100 00 01111111
Q ss_pred ccCCCHHHHHHHHhccccccceEEEeecCCCCChhhHH--HHhc--CCCEEEeccccccchHHHHHHHHHHhC-ceEEEe
Q 018394 177 REDATVDDLIDVIEGNRKYMKCVYVYNKIDVIGIDDVD--KLAR--QPNSVVISCNLKLNLDRLLARMWEEMG-LVRVYT 251 (356)
Q Consensus 177 thd~~~~~~~~~i~~~~~~~p~i~v~NK~Dl~~~~~~~--~l~~--~~~~i~iSa~~~~~l~~L~~~i~~~l~-~i~~~~ 251 (356)
+. .+|+++|+||+|+....... .+.+ ..+++++||++|.|+++|.+.|.+.+. ..
T Consensus 341 ------------l~----~~piIvV~NK~Dl~~~~~~~~~~l~~~~~~~~i~vSAktg~GI~eL~~~i~~~~~~~~---- 400 (476)
T 3gee_A 341 ------------HP----AAKFLTVANKLDRAANADALIRAIADGTGTEVIGISALNGDGIDTLKQHMGDLVKNLD---- 400 (476)
T ss_dssp ------------CT----TSEEEEEEECTTSCTTTHHHHHHHHHHHTSCEEECBTTTTBSHHHHHHHHTHHHHSSC----
T ss_pred ------------cC----CCCEEEEEECcCCCCccchhHHHHHhcCCCceEEEEECCCCCHHHHHHHHHHHHhhcc----
Confidence 11 35999999999998654332 2332 367899999999999999999988774 21
Q ss_pred CCCCCCCCCCccEEeecCCCCCCHHHHHHHHHHhHh
Q 018394 252 KPQGQQPDFTEPVVLSVDRGGCTVEDFCNHIHRSLV 287 (356)
Q Consensus 252 ~~~~~~p~~~~~~~~~~~r~g~~v~~~a~~ih~~l~ 287 (356)
.+....+ ++.+.||...++.+..++...+.
T Consensus 401 -----~~~~~~~-~~~~~R~~~~l~~a~~~L~~~~~ 430 (476)
T 3gee_A 401 -----KLHEASV-LVTSLRHYEALRNASDALQNALE 430 (476)
T ss_dssp -----CCCTTSC-CCCSHHHHHHHHHHHHHHHHHHT
T ss_pred -----CCCCccc-ccccHHHHHHHHHHHHHHHHHHH
Confidence 1112233 34555777778888777776543
No 56
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=99.77 E-value=3.3e-19 Score=182.63 Aligned_cols=153 Identities=14% Similarity=0.225 Sum_probs=102.9
Q ss_pred CCeEEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCccccccccccccceEEEECCEeecccCccccccccccCcccccc
Q 018394 10 EGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQ 89 (356)
Q Consensus 10 ~s~~v~~~~g~~v~LvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~~D~pGl~~~~~~~~~~~~~ 89 (356)
++|++.+ |++++|+|||||||||||++|+|...| ..|.|.+. ..+ |+ ..|
T Consensus 375 ~~~~v~~--Gei~~i~G~NGsGKSTLlk~l~Gl~~p-----------~~G~I~~~-~~i------~~----------v~Q 424 (607)
T 3bk7_A 375 EPGEIRK--GEVIGIVGPNGIGKTTFVKMLAGVEEP-----------TEGKVEWD-LTV------AY----------KPQ 424 (607)
T ss_dssp CCEEEET--TCEEEEECCTTSSHHHHHHHHHTSSCC-----------SBSCCCCC-CCE------EE----------ECS
T ss_pred cccccCC--CCEEEEECCCCCCHHHHHHHHhcCCCC-----------CceEEEEe-eEE------EE----------Eec
Confidence 4455677 789999999999999999999999876 56766541 111 11 111
Q ss_pred cccc---ccchhHHHHHHhcCChHHHHHHHHHHHHHccC--ccccccCcccccceecccee---------eeecCCCCCC
Q 018394 90 VIAV---SKSSDIVLMVLDASKSEGHRQILTKELEAVGL--RLNKRPPQIYFKKKKTGGIS---------FNSTLPLTHV 155 (356)
Q Consensus 90 ~~~~---~~~~d~i~~v~d~~~~~~~~~~i~~~L~~~~i--~l~~~~~~lS~g~~qr~~ia---------l~~DEp~~~L 155 (356)
.... ....+++...... .....+.+.++|+.+++ .+++++.+||+||+||+.|| +++||||++|
T Consensus 425 ~~~~~~~~tv~e~~~~~~~~--~~~~~~~~~~~l~~~~l~~~~~~~~~~LSGGe~QRv~iAraL~~~p~lLlLDEPt~~L 502 (607)
T 3bk7_A 425 YIKAEYEGTVYELLSKIDSS--KLNSNFYKTELLKPLGIIDLYDRNVEDLSGGELQRVAIAATLLRDADIYLLDEPSAYL 502 (607)
T ss_dssp SCCCCCSSBHHHHHHHHHHH--HHHCHHHHHHTHHHHTCTTTTTSBGGGCCHHHHHHHHHHHHHTSCCSEEEEECTTTTC
T ss_pred CccCCCCCcHHHHHHhhhcc--CCCHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCccCC
Confidence 1111 1112222221000 01123457788999999 67889999999999999998 9999999999
Q ss_pred CHHHHHHH---HHHhc--ccCcEEEEccCCCHHHHHHHHhccccccceEEEee
Q 018394 156 DEKLCYQI---LHEYK--IHNAEVLFREDATVDDLIDVIEGNRKYMKCVYVYN 203 (356)
Q Consensus 156 D~~~~~~i---l~~l~--~~~~~i~~thd~~~~~~~~~i~~~~~~~p~i~v~N 203 (356)
|+.....+ |+.+. .+.++|++|||...... ....+++++
T Consensus 503 D~~~~~~l~~~l~~l~~~~g~tvi~vsHd~~~~~~---------~adrv~vl~ 546 (607)
T 3bk7_A 503 DVEQRLAVSRAIRHLMEKNEKTALVVEHDVLMIDY---------VSDRLIVFE 546 (607)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHH---------HCSEEEEEE
T ss_pred CHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHH---------hCCEEEEEc
Confidence 99885544 44543 25699999999755432 235666765
No 57
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=99.77 E-value=3.2e-19 Score=180.67 Aligned_cols=153 Identities=14% Similarity=0.226 Sum_probs=102.4
Q ss_pred CCeEEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCccccccccccccceEEEECCEeecccCccccccccccCcccccc
Q 018394 10 EGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQ 89 (356)
Q Consensus 10 ~s~~v~~~~g~~v~LvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~~D~pGl~~~~~~~~~~~~~ 89 (356)
++|++.+ |+++||+|+||||||||+++|+|...| ..|.|.+. ..+ |+. .|
T Consensus 305 ~~~~i~~--Ge~~~i~G~NGsGKSTLlk~l~Gl~~p-----------~~G~i~~~-~~i------~~v----------~Q 354 (538)
T 1yqt_A 305 EPGEIKK--GEVIGIVGPNGIGKTTFVKMLAGVEEP-----------TEGKIEWD-LTV------AYK----------PQ 354 (538)
T ss_dssp CCEEEET--TCEEEEECCTTSSHHHHHHHHHTSSCC-----------SBCCCCCC-CCE------EEE----------CS
T ss_pred CccccCC--CCEEEEECCCCCCHHHHHHHHhCCCCC-----------CCeEEEEC-ceE------EEE----------ec
Confidence 3455677 789999999999999999999999876 56766541 111 111 11
Q ss_pred cccc---ccchhHHHHHHhcCChHHHHHHHHHHHHHccC--ccccccCcccccceecccee---------eeecCCCCCC
Q 018394 90 VIAV---SKSSDIVLMVLDASKSEGHRQILTKELEAVGL--RLNKRPPQIYFKKKKTGGIS---------FNSTLPLTHV 155 (356)
Q Consensus 90 ~~~~---~~~~d~i~~v~d~~~~~~~~~~i~~~L~~~~i--~l~~~~~~lS~g~~qr~~ia---------l~~DEp~~~L 155 (356)
.... ....+++...... .....+.+.++|+.+++ ..++++..||+||+||+.|| +++||||++|
T Consensus 355 ~~~~~~~~tv~~~~~~~~~~--~~~~~~~~~~~l~~~~l~~~~~~~~~~LSGGe~qrv~lAraL~~~p~lLlLDEPt~~L 432 (538)
T 1yqt_A 355 YIKADYEGTVYELLSKIDAS--KLNSNFYKTELLKPLGIIDLYDREVNELSGGELQRVAIAATLLRDADIYLLDEPSAYL 432 (538)
T ss_dssp SCCCCCSSBHHHHHHHHHHH--HHTCHHHHHHTTTTTTCGGGTTSBGGGCCHHHHHHHHHHHHHTSCCSEEEEECTTTTC
T ss_pred CCcCCCCCcHHHHHHhhhcc--CCCHHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCcccC
Confidence 1100 1112222221000 00123456778888898 67889999999999999998 9999999999
Q ss_pred CHHHHHHH---HHHhc--ccCcEEEEccCCCHHHHHHHHhccccccceEEEee
Q 018394 156 DEKLCYQI---LHEYK--IHNAEVLFREDATVDDLIDVIEGNRKYMKCVYVYN 203 (356)
Q Consensus 156 D~~~~~~i---l~~l~--~~~~~i~~thd~~~~~~~~~i~~~~~~~p~i~v~N 203 (356)
|......+ |+.+. .+.++|++|||...... .+..+++++
T Consensus 433 D~~~~~~i~~~l~~l~~~~g~tvi~vsHd~~~~~~---------~~drv~vl~ 476 (538)
T 1yqt_A 433 DVEQRLAVSRAIRHLMEKNEKTALVVEHDVLMIDY---------VSDRLMVFE 476 (538)
T ss_dssp CHHHHHHHHHHHHHHHHHHTCEEEEECSCHHHHHH---------HCSEEEEEE
T ss_pred CHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHH---------hCCEEEEEe
Confidence 99885544 44443 25699999999765432 236677765
No 58
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=99.77 E-value=1.3e-19 Score=200.33 Aligned_cols=182 Identities=16% Similarity=0.159 Sum_probs=133.1
Q ss_pred CCCCeEEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCccccccccccccceEEEECCEeecccCccccccccccCcccc
Q 018394 8 AGEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRG 87 (356)
Q Consensus 8 ~~~s~~v~~~~g~~v~LvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~~D~pGl~~~~~~~~~~~ 87 (356)
+++||++++ |++|||||++|||||||+++|.|...| .+|.|.++|.++.-++...++. .++.+
T Consensus 1096 ~~isl~I~~--Ge~vaIVG~SGsGKSTL~~lL~rl~~p-----------~~G~I~iDG~di~~i~~~~lR~----~i~~V 1158 (1321)
T 4f4c_A 1096 KGLSFSVEP--GQTLALVGPSGCGKSTVVALLERFYDT-----------LGGEIFIDGSEIKTLNPEHTRS----QIAIV 1158 (1321)
T ss_dssp EEEEEEECT--TCEEEEECSTTSSTTSHHHHHTTSSCC-----------SSSEEEETTEETTTBCHHHHHT----TEEEE
T ss_pred cceeEEECC--CCEEEEECCCCChHHHHHHHHhcCccC-----------CCCEEEECCEEhhhCCHHHHHh----heEEE
Confidence 588999999 889999999999999999999999866 8999999999998877665543 35666
Q ss_pred ccccccccc--hhHHHHHHhcCChHHHHHHHHHHHHHccC--cc-----------ccccCcccccceecccee-------
Q 018394 88 RQVIAVSKS--SDIVLMVLDASKSEGHRQILTKELEAVGL--RL-----------NKRPPQIYFKKKKTGGIS------- 145 (356)
Q Consensus 88 ~~~~~~~~~--~d~i~~v~d~~~~~~~~~~i~~~L~~~~i--~l-----------~~~~~~lS~g~~qr~~ia------- 145 (356)
.|.+..+.. .++|.+..|.. ....+.+.+.++..++ .+ ...-.+||+||+||++||
T Consensus 1159 ~Qdp~LF~gTIreNI~~gld~~--~~sd~ei~~Al~~a~l~~~I~~Lp~GldT~vge~G~~LSgGQrQriaiARAllr~~ 1236 (1321)
T 4f4c_A 1159 SQEPTLFDCSIAENIIYGLDPS--SVTMAQVEEAARLANIHNFIAELPEGFETRVGDRGTQLSGGQKQRIAIARALVRNP 1236 (1321)
T ss_dssp CSSCCCCSEEHHHHHSSSSCTT--TSCHHHHHHHHHHTTCHHHHHTSTTTTCSEETTTSCSSCHHHHHHHHHHHHHHSCC
T ss_pred CCCCEeeCccHHHHHhccCCCC--CCCHHHHHHHHHHhCChHHHHcCcCCCCCEecCCCcccCHHHHHHHHHHHHHHhCC
Confidence 777666654 45554333321 1223456777777766 22 223357999999999998
Q ss_pred --eeecCCCCCCCHHHHH---HHHHHhcccCcEEEEccCCCHHHHHHHHhccccccceEEEeecCCCCChhhHHHHhc
Q 018394 146 --FNSTLPLTHVDEKLCY---QILHEYKIHNAEVLFREDATVDDLIDVIEGNRKYMKCVYVYNKIDVIGIDDVDKLAR 218 (356)
Q Consensus 146 --l~~DEp~~~LD~~~~~---~il~~l~~~~~~i~~thd~~~~~~~~~i~~~~~~~p~i~v~NK~Dl~~~~~~~~l~~ 218 (356)
+++||||++||.++-. +.++.+..+.|+|+++|..+-. ...+.|+|+.+.-+......++|.+
T Consensus 1237 ~ILiLDEaTSaLD~~tE~~Iq~~l~~~~~~~TvI~IAHRLsTi----------~~aD~I~Vld~G~IvE~Gth~eLl~ 1304 (1321)
T 4f4c_A 1237 KILLLDEATSALDTESEKVVQEALDRAREGRTCIVIAHRLNTV----------MNADCIAVVSNGTIIEKGTHTQLMS 1304 (1321)
T ss_dssp SEEEEESCCCSTTSHHHHHHHHHHTTTSSSSEEEEECSSSSTT----------TTCSEEEEESSSSEEEEECHHHHHH
T ss_pred CEEEEeCccccCCHHHHHHHHHHHHHHcCCCEEEEeccCHHHH----------HhCCEEEEEECCEEEEECCHHHHHh
Confidence 9999999999988744 4444444567999999987532 2358899998887664444455543
No 59
>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}
Probab=99.77 E-value=9.7e-20 Score=181.02 Aligned_cols=188 Identities=19% Similarity=0.218 Sum_probs=123.0
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHcCC-CCccccccccccccceEEEECCEeecccCccccccccccCccc-cccccccccc
Q 018394 19 HGRVALIGFPSVGKSTLLTLLTGTH-SEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGR-GRQVIAVSKS 96 (356)
Q Consensus 19 g~~v~LvG~~gaGKSTLln~L~g~~-~~vs~~p~TT~~~~~G~i~~~g~~i~~~D~pGl~~~~~~~~~~-~~~~~~~~~~ 96 (356)
+..|+|+|+||||||||+|+|++.. ..++++|+||++.....+.++|.++.++||||+.......... .......++.
T Consensus 224 ~~kV~ivG~~nvGKSSLln~L~~~~~a~v~~~~gtT~d~~~~~i~~~g~~v~liDT~G~~~~~~~ve~~gi~~~~~~~~~ 303 (462)
T 3geh_A 224 GLKVAIVGRPNVGKSSLLNAWSQSDRAIVTDLPGTTRDVVESQLVVGGIPVQVLDTAGIRETSDQVEKIGVERSRQAANT 303 (462)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHHHBSCCSCCTTCCHHHHHHEEEETTEEEEECC--------------------CCCCS
T ss_pred CCEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCeeEEEEEEEEEECCEEEEEEECCccccchhHHHHHHHHHHhhhhhc
Confidence 4689999999999999999999986 4689999999999999999999999999999986432111010 1223334567
Q ss_pred hhHHHHHHhcCChHHHHHHHHHHHHHccCccccccCcccccceeccceeeeecCCCCCCCHHHHHHHHHHhcccCcEEEE
Q 018394 97 SDIVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNAEVLF 176 (356)
Q Consensus 97 ~d~i~~v~d~~~~~~~~~~i~~~L~~~~i~l~~~~~~lS~g~~qr~~ial~~DEp~~~LD~~~~~~il~~l~~~~~~i~~ 176 (356)
+|++++|+|.+.+..... .++++
T Consensus 304 aD~vl~VvD~s~~~~~~~----------------------------------------------~~i~~----------- 326 (462)
T 3geh_A 304 ADLVLLTIDAATGWTTGD----------------------------------------------QEIYE----------- 326 (462)
T ss_dssp CSEEEEEEETTTCSCHHH----------------------------------------------HHHHH-----------
T ss_pred CCEEEEEeccCCCCCHHH----------------------------------------------HHHHH-----------
Confidence 888888877665322111 01111
Q ss_pred ccCCCHHHHHHHHhccccccceEEEeecCCCCChhhHHHHh---cCCCEEEeccccccchHHHHHHHHHHhCceEEEeCC
Q 018394 177 REDATVDDLIDVIEGNRKYMKCVYVYNKIDVIGIDDVDKLA---RQPNSVVISCNLKLNLDRLLARMWEEMGLVRVYTKP 253 (356)
Q Consensus 177 thd~~~~~~~~~i~~~~~~~p~i~v~NK~Dl~~~~~~~~l~---~~~~~i~iSa~~~~~l~~L~~~i~~~l~~i~~~~~~ 253 (356)
.+. .+|+++|+||+|+........+. ...+++++||++|.|+++|.+.|.+.+....
T Consensus 327 -----------~l~----~~piivV~NK~Dl~~~~~~~~~~~~~~~~~~i~iSAktg~Gi~eL~~~i~~~~~~~~----- 386 (462)
T 3geh_A 327 -----------QVK----HRPLILVMNKIDLVEKQLITSLEYPENITQIVHTAAAQKQGIDSLETAILEIVQTGK----- 386 (462)
T ss_dssp -----------HHT----TSCEEEEEECTTSSCGGGSTTCCCCTTCCCEEEEBTTTTBSHHHHHHHHHHHHTTSS-----
T ss_pred -----------hcc----CCcEEEEEECCCCCcchhhHHHHHhccCCcEEEEECCCCCCHHHHHHHHHHHHhccC-----
Confidence 111 25999999999998655433221 2346899999999999999999998875321
Q ss_pred CCCCCCCCccEEeecCCCCCCHHHHHHHHHHhHh
Q 018394 254 QGQQPDFTEPVVLSVDRGGCTVEDFCNHIHRSLV 287 (356)
Q Consensus 254 ~~~~p~~~~~~~~~~~r~g~~v~~~a~~ih~~l~ 287 (356)
.+....+ ++.+.||...++.+.+++...+.
T Consensus 387 ---~~~~~~~-~~~~~R~~~~L~~a~~~L~~~~~ 416 (462)
T 3geh_A 387 ---VQAADMD-LAINQRQAAALTQAKMSLEQVQA 416 (462)
T ss_dssp ---SSSCCSS-CCCCHHHHHHHHHHHHHHHHHHH
T ss_pred ---CCCcccc-eechHHHHHHHHHHHHHHHHHHH
Confidence 1112223 34555788888888888776553
No 60
>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*
Probab=99.76 E-value=1e-19 Score=181.75 Aligned_cols=186 Identities=25% Similarity=0.304 Sum_probs=125.4
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHcCC-CCccccccccccccceEEEECCEeecccCccccc-cccccCcccc-cccccccc
Q 018394 19 HGRVALIGFPSVGKSTLLTLLTGTH-SEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGII-EGASEGKGRG-RQVIAVSK 95 (356)
Q Consensus 19 g~~v~LvG~~gaGKSTLln~L~g~~-~~vs~~p~TT~~~~~G~i~~~g~~i~~~D~pGl~-~~~~~~~~~~-~~~~~~~~ 95 (356)
+..|+|+|+||||||||+|+|++.. +.++++||||+|+..+.+.++|.++.++||||+. .........+ ......++
T Consensus 243 ~~kV~ivG~pnvGKSSLln~L~~~~~a~vs~~~gTT~d~~~~~i~~~g~~~~l~DTaG~~~~~~~~ve~~gi~~~~~~~~ 322 (482)
T 1xzp_A 243 GLRMVIVGKPNVGKSTLLNRLLNEDRAIVTDIPGTTRDVISEEIVIRGILFRIVDTAGVRSETNDLVERLGIERTLQEIE 322 (482)
T ss_dssp CEEEEEECCHHHHTCHHHHHHHHHTBCCCCCSSCCSSCSCCEEEEETTEEEEEEESSCCCSSCCTTCCCCCHHHHHHHHH
T ss_pred CCEEEEECcCCCcHHHHHHHHHCCCCCccCCCCCeeeeeEEEEEecCCeEEEEEECCCccccchhhHHHHHHHHHHHHhh
Confidence 4689999999999999999999987 5699999999999999999999999999999986 4322111111 11223455
Q ss_pred chhHHHHHHhcCChHHHHHHHHHHHHHccCccccccCcccccceeccceeeeecCCCCCCCHHHHHHHHHHhcccCcEEE
Q 018394 96 SSDIVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNAEVL 175 (356)
Q Consensus 96 ~~d~i~~v~d~~~~~~~~~~i~~~L~~~~i~l~~~~~~lS~g~~qr~~ial~~DEp~~~LD~~~~~~il~~l~~~~~~i~ 175 (356)
.+|++++|+|.+.+....+ .+++
T Consensus 323 ~aD~vl~VvD~s~~~s~~~----------------------------------------------~~il----------- 345 (482)
T 1xzp_A 323 KADIVLFVLDASSPLDEED----------------------------------------------RKIL----------- 345 (482)
T ss_dssp HCSEEEEEEETTSCCCHHH----------------------------------------------HHHH-----------
T ss_pred cccEEEEEecCCCCCCHHH----------------------------------------------HHHH-----------
Confidence 6777777777654321100 0111
Q ss_pred EccCCCHHHHHHHHhccccccceEEEeecCCCCCh---hhHHHHhcC-CCEEEeccccccchHHHHHHHHHHhCceEEEe
Q 018394 176 FREDATVDDLIDVIEGNRKYMKCVYVYNKIDVIGI---DDVDKLARQ-PNSVVISCNLKLNLDRLLARMWEEMGLVRVYT 251 (356)
Q Consensus 176 ~thd~~~~~~~~~i~~~~~~~p~i~v~NK~Dl~~~---~~~~~l~~~-~~~i~iSa~~~~~l~~L~~~i~~~l~~i~~~~ 251 (356)
+.+ ..+|+++|+||+|+... +++..+... .+++++||++|.|+++|.+.|.+.+.. .+
T Consensus 346 -----------~~l----~~~piivV~NK~DL~~~~~~~~~~~~~~~~~~~i~iSAktg~Gi~eL~~~l~~~~~~-~~-- 407 (482)
T 1xzp_A 346 -----------ERI----KNKRYLVVINKVDVVEKINEEEIKNKLGTDRHMVKISALKGEGLEKLEESIYRETQE-IF-- 407 (482)
T ss_dssp -----------HHH----TTSSEEEEEEECSSCCCCCHHHHHHHHTCSTTEEEEEGGGTCCHHHHHHHHHHHTHH-HH--
T ss_pred -----------HHh----cCCCEEEEEECcccccccCHHHHHHHhcCCCcEEEEECCCCCCHHHHHHHHHHHHhh-hc--
Confidence 111 13599999999999743 233333222 468999999999999999999886531 00
Q ss_pred CCCCCCCCCCccEEeecCCCCCCHHHHHHHHHHhH
Q 018394 252 KPQGQQPDFTEPVVLSVDRGGCTVEDFCNHIHRSL 286 (356)
Q Consensus 252 ~~~~~~p~~~~~~~~~~~r~g~~v~~~a~~ih~~l 286 (356)
.....++ +.+.||...+..+.+++...+
T Consensus 408 ------~~~~~~~-~~~~R~~~~l~~a~~~L~~~~ 435 (482)
T 1xzp_A 408 ------ERGSDSL-ITNLRQKQLLENVKGHLEDAI 435 (482)
T ss_dssp ------HHHTTCS-CCSHHHHHHHHHHHHHHHHHH
T ss_pred ------CCCCcce-EhhHHHHHHHHHHHHHHHHHH
Confidence 0012233 345577777777777776543
No 61
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=99.76 E-value=4.6e-19 Score=166.99 Aligned_cols=157 Identities=22% Similarity=0.251 Sum_probs=106.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCC-CccccccccccccceEEEECCEeecccCcccccccccc-Cccccccccccccchh
Q 018394 21 RVALIGFPSVGKSTLLTLLTGTHS-EAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASE-GKGRGRQVIAVSKSSD 98 (356)
Q Consensus 21 ~v~LvG~~gaGKSTLln~L~g~~~-~vs~~p~TT~~~~~G~i~~~g~~i~~~D~pGl~~~~~~-~~~~~~~~~~~~~~~d 98 (356)
.|+|+|+||||||||+|+|+|... .+++.|+||++...|.+..++.++.++||||+...... ...+.......++.+|
T Consensus 9 ~V~ivG~~nvGKSTLln~l~g~~~~ivs~~~~tTr~~i~~i~~~~~~~l~l~DTpG~~~~~~~l~~~~~~~~~~~l~~ad 88 (301)
T 1wf3_A 9 FVAIVGKPNVGKSTLLNNLLGVKVAPISPRPQTTRKRLRGILTEGRRQIVFVDTPGLHKPMDALGEFMDQEVYEALADVN 88 (301)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEEEETTEEEEEEECCCCCCCCSHHHHHHHHHHHHHTSSCS
T ss_pred EEEEECCCCCCHHHHHHHHhCCceeeecCCCCceeEEEEEEEEeCCcEEEEecCccccchhhHHHHHHHHHHHHHHhcCC
Confidence 799999999999999999999874 57899999999999988889999999999998542110 0001112223445666
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHHccCccccccCcccccceeccceeeeecCCCCCCCHHHHHHHHHHhcccCcEEEEcc
Q 018394 99 IVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNAEVLFRE 178 (356)
Q Consensus 99 ~i~~v~d~~~~~~~~~~i~~~L~~~~i~l~~~~~~lS~g~~qr~~ial~~DEp~~~LD~~~~~~il~~l~~~~~~i~~th 178 (356)
++++|+|+.......+ ..+++.+
T Consensus 89 ~il~VvD~~~~~~~~~----------------------------------------------~~i~~~l----------- 111 (301)
T 1wf3_A 89 AVVWVVDLRHPPTPED----------------------------------------------ELVARAL----------- 111 (301)
T ss_dssp EEEEEEETTSCCCHHH----------------------------------------------HHHHHHH-----------
T ss_pred EEEEEEECCCCCChHH----------------------------------------------HHHHHHH-----------
Confidence 6666666644211100 0111111
Q ss_pred CCCHHHHHHHHhccccccceEEEeecCCCCChhh-HHH-Hhc---CCCEEEeccccccchHHHHHHHHHHhC
Q 018394 179 DATVDDLIDVIEGNRKYMKCVYVYNKIDVIGIDD-VDK-LAR---QPNSVVISCNLKLNLDRLLARMWEEMG 245 (356)
Q Consensus 179 d~~~~~~~~~i~~~~~~~p~i~v~NK~Dl~~~~~-~~~-l~~---~~~~i~iSa~~~~~l~~L~~~i~~~l~ 245 (356)
.......|+++|+||+|+..... +.. +.. +.+++++||++|.|+++|.+.+.+.+.
T Consensus 112 -----------~~~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~iSA~~g~gv~~l~~~l~~~l~ 172 (301)
T 1wf3_A 112 -----------KPLVGKVPILLVGNKLDAAKYPEEAMKAYHELLPEAEPRMLSALDERQVAELKADLLALMP 172 (301)
T ss_dssp -----------GGGTTTSCEEEEEECGGGCSSHHHHHHHHHHTSTTSEEEECCTTCHHHHHHHHHHHHTTCC
T ss_pred -----------HhhcCCCCEEEEEECcccCCchHHHHHHHHHhcCcCcEEEEeCCCCCCHHHHHHHHHHhcc
Confidence 10001369999999999985443 322 222 235899999999999999999988764
No 62
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=99.76 E-value=1.2e-19 Score=167.17 Aligned_cols=150 Identities=21% Similarity=0.297 Sum_probs=103.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCccccccccccccceEEEECCEeecccCccccccccccC----c--cccccccccc
Q 018394 21 RVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEG----K--GRGRQVIAVS 94 (356)
Q Consensus 21 ~v~LvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~~D~pGl~~~~~~~----~--~~~~~~~~~~ 94 (356)
.|+|+|.||||||||||+|+|....++++||+|++...|.+.++|..+.++||||........ . .....+ ...
T Consensus 3 kI~lvG~~n~GKSTL~n~L~g~~~~v~~~pg~Tv~~~~~~~~~~~~~~~lvDtpG~~~~~~~~~~~~~~e~i~~~~-~~~ 81 (256)
T 3iby_A 3 HALLIGNPNCGKTTLFNALTNANQRVGNWPGVTVEKKTGEFLLGEHLIEITDLPGVYSLVANAEGISQDEQIAAQS-VID 81 (256)
T ss_dssp EEEEEESTTSSHHHHHHHHHTTSEEEEECTTSSSEEEEEEEEETTEEEEEEECCCCSSCC------CHHHHHHHHH-HHH
T ss_pred EEEEECCCCCCHHHHHHHHHCCCCCccCCCCceEEEEEEEEEECCeEEEEEeCCCcccccccccCCCHHHHHHHHH-Hhh
Confidence 799999999999999999999988899999999999999999999999999999985432110 0 000011 011
Q ss_pred cchhHHHHHHhcCChHHHHHHHHHHHHHccCccccccCcccccceeccceeeeecCCCCCCCHHHHHHHHHHhcccCcEE
Q 018394 95 KSSDIVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNAEV 174 (356)
Q Consensus 95 ~~~d~i~~v~d~~~~~~~~~~i~~~L~~~~i~l~~~~~~lS~g~~qr~~ial~~DEp~~~LD~~~~~~il~~l~~~~~~i 174 (356)
+.+|++++|+|++....... +...
T Consensus 82 ~~~d~vi~VvDas~~~~~~~------------------------------------------------l~~~-------- 105 (256)
T 3iby_A 82 LEYDCIINVIDACHLERHLY------------------------------------------------LTSQ-------- 105 (256)
T ss_dssp SCCSEEEEEEEGGGHHHHHH------------------------------------------------HHHH--------
T ss_pred CCCCEEEEEeeCCCchhHHH------------------------------------------------HHHH--------
Confidence 45666666666554211110 0000
Q ss_pred EEccCCCHHHHHHHHhccccccceEEEeecCCCCChh----hHHHHhc--CCCEEEeccccccchHHHHHHHHHH
Q 018394 175 LFREDATVDDLIDVIEGNRKYMKCVYVYNKIDVIGID----DVDKLAR--QPNSVVISCNLKLNLDRLLARMWEE 243 (356)
Q Consensus 175 ~~thd~~~~~~~~~i~~~~~~~p~i~v~NK~Dl~~~~----~~~~l~~--~~~~i~iSa~~~~~l~~L~~~i~~~ 243 (356)
+. ....|+++|+||+|+.... ..+.+.. ..+++++||++|.|+++|.+.+.+.
T Consensus 106 --------------l~--~~~~pvilv~NK~Dl~~~~~~~~~~~~l~~~lg~~vi~~SA~~g~gi~el~~~i~~~ 164 (256)
T 3iby_A 106 --------------LF--ELGKPVVVALNMMDIAEHRGISIDTEKLESLLGCSVIPIQAHKNIGIPALQQSLLHC 164 (256)
T ss_dssp --------------HT--TSCSCEEEEEECHHHHHHTTCEECHHHHHHHHCSCEEECBGGGTBSHHHHHHHHHTC
T ss_pred --------------HH--HcCCCEEEEEEChhcCCcCCcHHHHHHHHHHcCCCEEEEECCCCCCHHHHHHHHHhh
Confidence 11 1135999999999986332 2233322 2468999999999999999999765
No 63
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=99.75 E-value=4e-19 Score=175.83 Aligned_cols=156 Identities=20% Similarity=0.319 Sum_probs=97.7
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcCC-CCccccccccccccceEEEECCEeecccCccccccccccCc--cccccccccccc
Q 018394 20 GRVALIGFPSVGKSTLLTLLTGTH-SEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGK--GRGRQVIAVSKS 96 (356)
Q Consensus 20 ~~v~LvG~~gaGKSTLln~L~g~~-~~vs~~p~TT~~~~~G~i~~~g~~i~~~D~pGl~~~~~~~~--~~~~~~~~~~~~ 96 (356)
..|+|+|.||||||||||.|+|.. +.++++||||+|...+.+.++|..+.++||||+........ .+..+....++.
T Consensus 2 ~~v~ivG~pnvGKStL~nrl~~~~~~~v~~~~g~T~d~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~~~ 81 (439)
T 1mky_A 2 ATVLIVGRPNVGKSTLFNKLVKKKKAIVEDEEGVTRDPVQDTVEWYGKTFKLVDTCGVFDNPQDIISQKMKEVTLNMIRE 81 (439)
T ss_dssp CEEEEECCTTSSHHHHHHHHHC--------------CCSEEEEEETTEEEEEEECTTTTSSGGGCCCHHHHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCceecCCCCCccceeeEEEEECCeEEEEEECCCccccccchHHHHHHHHHHHHHHh
Confidence 379999999999999999999987 45899999999999999999999999999999864221111 111233344567
Q ss_pred hhHHHHHHhcCChHHHHHHHHHHHHHccCccccccCcccccceeccceeeeecCCCCCCCHHHHHHHHHHhcccCcEEEE
Q 018394 97 SDIVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNAEVLF 176 (356)
Q Consensus 97 ~d~i~~v~d~~~~~~~~~~i~~~L~~~~i~l~~~~~~lS~g~~qr~~ial~~DEp~~~LD~~~~~~il~~l~~~~~~i~~ 176 (356)
+|++++|+|+.......+ ..+.++++
T Consensus 82 ad~il~V~D~~~~~~~~d-------------------------------------------~~i~~~l~----------- 107 (439)
T 1mky_A 82 ADLVLFVVDGKRGITKED-------------------------------------------ESLADFLR----------- 107 (439)
T ss_dssp CSEEEEEEETTTCCCHHH-------------------------------------------HHHHHHHH-----------
T ss_pred CCEEEEEEECCCCCCHHH-------------------------------------------HHHHHHHH-----------
Confidence 777777777654211110 00111111
Q ss_pred ccCCCHHHHHHHHhccccccceEEEeecCCCCCh--hhH-HHHhc--CCCEEEeccccccchHHHHHHHHHHhC
Q 018394 177 REDATVDDLIDVIEGNRKYMKCVYVYNKIDVIGI--DDV-DKLAR--QPNSVVISCNLKLNLDRLLARMWEEMG 245 (356)
Q Consensus 177 thd~~~~~~~~~i~~~~~~~p~i~v~NK~Dl~~~--~~~-~~l~~--~~~~i~iSa~~~~~l~~L~~~i~~~l~ 245 (356)
...+|+++|+||+|+... .+. .++.. ..+++++||++|.|+++|.+.+.+.+.
T Consensus 108 ----------------~~~~p~ilv~NK~D~~~~~~~~~~~~~~~lg~~~~~~iSA~~g~gv~~L~~~i~~~l~ 165 (439)
T 1mky_A 108 ----------------KSTVDTILVANKAENLREFEREVKPELYSLGFGEPIPVSAEHNINLDTMLETIIKKLE 165 (439)
T ss_dssp ----------------HHTCCEEEEEESCCSHHHHHHHTHHHHGGGSSCSCEECBTTTTBSHHHHHHHHHHHHH
T ss_pred ----------------HcCCCEEEEEeCCCCccccHHHHHHHHHhcCCCCEEEEeccCCCCHHHHHHHHHHhcc
Confidence 113699999999998633 122 33332 235799999999999999999987663
No 64
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=99.75 E-value=1.2e-18 Score=164.58 Aligned_cols=158 Identities=28% Similarity=0.307 Sum_probs=105.3
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcCCC-CccccccccccccceEEEEC-CEeecccCccccccccccC---ccccccccccc
Q 018394 20 GRVALIGFPSVGKSTLLTLLTGTHS-EAASYEFTTLTCIPGIIHYN-DTKIQLLDLPGIIEGASEG---KGRGRQVIAVS 94 (356)
Q Consensus 20 ~~v~LvG~~gaGKSTLln~L~g~~~-~vs~~p~TT~~~~~G~i~~~-g~~i~~~D~pGl~~~~~~~---~~~~~~~~~~~ 94 (356)
..|+|+|.||||||||+|+|+|... .+++.|+||++...|.+..+ +.++.++||||+....... ..+.......+
T Consensus 11 g~v~ivG~~nvGKSTLin~l~g~~~~i~s~~~~tT~~~~~~~~~~~~~~~i~lvDTPG~~~~~~~~~l~~~~~~~~~~~l 90 (308)
T 3iev_A 11 GYVAIVGKPNVGKSTLLNNLLGTKVSIISPKAGTTRMRVLGVKNIPNEAQIIFLDTPGIYEPKKSDVLGHSMVEIAKQSL 90 (308)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEEEETTTEEEEEEECCCCCCCCTTCHHHHHHHHHHHHHH
T ss_pred CEEEEECCCCCcHHHHHHHHhCCCccccCCCCCceeeEEEEEEecCCCCeEEEEECcCCCccccchhHHHHHHHHHHHHh
Confidence 4899999999999999999999884 58999999999999999998 9999999999985421000 00001111122
Q ss_pred cchhHHHHHHhcCChHHHHHHHHHHHHHccCccccccCcccccceeccceeeeecCCCCCCCHHHHHHHHHHhcccCcEE
Q 018394 95 KSSDIVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNAEV 174 (356)
Q Consensus 95 ~~~d~i~~v~d~~~~~~~~~~i~~~L~~~~i~l~~~~~~lS~g~~qr~~ial~~DEp~~~LD~~~~~~il~~l~~~~~~i 174 (356)
+.+|++++|+|+..... ......+++.+
T Consensus 91 ~~aD~il~VvD~~~~~~---------------------------------------------~~~~~~~~~~l------- 118 (308)
T 3iev_A 91 EEADVILFMIDATEGWR---------------------------------------------PRDEEIYQNFI------- 118 (308)
T ss_dssp HHCSEEEEEEETTTBSC---------------------------------------------HHHHHHHHHHT-------
T ss_pred hcCCEEEEEEeCCCCCC---------------------------------------------chhHHHHHHHH-------
Confidence 33444444444432211 11111111111
Q ss_pred EEccCCCHHHHHHHHhccccccceEEEeecCCCC-ChhhH----HHHh----cCCCEEEeccccccchHHHHHHHHHHhC
Q 018394 175 LFREDATVDDLIDVIEGNRKYMKCVYVYNKIDVI-GIDDV----DKLA----RQPNSVVISCNLKLNLDRLLARMWEEMG 245 (356)
Q Consensus 175 ~~thd~~~~~~~~~i~~~~~~~p~i~v~NK~Dl~-~~~~~----~~l~----~~~~~i~iSa~~~~~l~~L~~~i~~~l~ 245 (356)
. ....|+++|+||+|+. ..... ..+. ...+++++||++|.|+++|.+.+.+.+.
T Consensus 119 ---------------~--~~~~pvilV~NK~Dl~~~~~~~~~~~~~l~~~~~~~~~i~~vSA~~g~gv~~L~~~l~~~l~ 181 (308)
T 3iev_A 119 ---------------K--PLNKPVIVVINKIDKIGPAKNVLPLIDEIHKKHPELTEIVPISALKGANLDELVKTILKYLP 181 (308)
T ss_dssp ---------------G--GGCCCEEEEEECGGGSSSGGGGHHHHHHHHHHCTTCCCEEECBTTTTBSHHHHHHHHHHHSC
T ss_pred ---------------H--hcCCCEEEEEECccCCCCHHHHHHHHHHHHHhccCCCeEEEEeCCCCCCHHHHHHHHHHhCc
Confidence 1 1136999999999997 44332 2222 2356999999999999999999998885
Q ss_pred c
Q 018394 246 L 246 (356)
Q Consensus 246 ~ 246 (356)
.
T Consensus 182 ~ 182 (308)
T 3iev_A 182 E 182 (308)
T ss_dssp B
T ss_pred c
Confidence 3
No 65
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=99.74 E-value=7.2e-20 Score=157.84 Aligned_cols=59 Identities=27% Similarity=0.417 Sum_probs=54.5
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHcCCC-CccccccccccccceEEEECCEeecccCccccc
Q 018394 19 HGRVALIGFPSVGKSTLLTLLTGTHS-EAASYEFTTLTCIPGIIHYNDTKIQLLDLPGII 77 (356)
Q Consensus 19 g~~v~LvG~~gaGKSTLln~L~g~~~-~vs~~p~TT~~~~~G~i~~~g~~i~~~D~pGl~ 77 (356)
+..|+|+|+||||||||+|+|++... .++++|+||++...+.+.++|.++.++||||+.
T Consensus 4 ~~ki~ivG~~g~GKStLl~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~ 63 (172)
T 2gj8_A 4 GMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLR 63 (172)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSTTCCCSCEEEEEEETTEEEEEEECCCCS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCcceeeCCCCceeceeeEEEEECCeEEEEEECCCcc
Confidence 57999999999999999999999874 578999999999999999999999999999974
No 66
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=99.74 E-value=1.7e-19 Score=167.66 Aligned_cols=154 Identities=21% Similarity=0.285 Sum_probs=104.8
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcCCCCccccccccccccceEEEECCEeecccCccccccccccCc--cc---cccccccc
Q 018394 20 GRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGK--GR---GRQVIAVS 94 (356)
Q Consensus 20 ~~v~LvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~~D~pGl~~~~~~~~--~~---~~~~~~~~ 94 (356)
..|+|+|.+|||||||+|+|+|....++++||||+++..+.+.+++.++.++||||......... .. ........
T Consensus 4 ~~I~lvG~~n~GKSTLin~l~g~~~~v~~~~g~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~e~i~~~~~~~ 83 (274)
T 3i8s_A 4 LTIGLIGNPNSGKTTLFNQLTGSRQRVGNWAGVTVERKEGQFSTTDHQVTLVDLPGTYSLTTISSQTSLDEQIACHYILS 83 (274)
T ss_dssp EEEEEEECTTSSHHHHHHHHHTTCEEEEECTTSSSEEEEEEEECSSCEEEEEECCCCSCSCC----CCHHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCcccCCCCCeeEEEEEEEEEeCCCceEEEECcCCCccccccccCCHHHHHHHHHHhh
Confidence 58999999999999999999999988999999999999999999999999999999754321000 00 00000112
Q ss_pred cchhHHHHHHhcCChHHHHHHHHHHHHHccCccccccCcccccceeccceeeeecCCCCCCCHHHHHHHHHHhcccCcEE
Q 018394 95 KSSDIVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNAEV 174 (356)
Q Consensus 95 ~~~d~i~~v~d~~~~~~~~~~i~~~L~~~~i~l~~~~~~lS~g~~qr~~ial~~DEp~~~LD~~~~~~il~~l~~~~~~i 174 (356)
+.+|++++|+|+........ ++..
T Consensus 84 ~~~d~ii~VvD~~~~~~~~~------------------------------------------------~~~~-------- 107 (274)
T 3i8s_A 84 GDADLLINVVDASNLERNLY------------------------------------------------LTLQ-------- 107 (274)
T ss_dssp TCCSEEEEEEEGGGHHHHHH------------------------------------------------HHHH--------
T ss_pred cCCCEEEEEecCCChHHHHH------------------------------------------------HHHH--------
Confidence 44555555655543211110 0000
Q ss_pred EEccCCCHHHHHHHHhccccccceEEEeecCCCCChh----hHHHHhc--CCCEEEeccccccchHHHHHHHHHHhC
Q 018394 175 LFREDATVDDLIDVIEGNRKYMKCVYVYNKIDVIGID----DVDKLAR--QPNSVVISCNLKLNLDRLLARMWEEMG 245 (356)
Q Consensus 175 ~~thd~~~~~~~~~i~~~~~~~p~i~v~NK~Dl~~~~----~~~~l~~--~~~~i~iSa~~~~~l~~L~~~i~~~l~ 245 (356)
+. ....|+++|+||+|+.... ..+.+.. ..+++++||++|.|+++|.+.+.+.+.
T Consensus 108 --------------l~--~~~~p~ivv~NK~Dl~~~~~~~~~~~~l~~~lg~~~i~~SA~~g~gi~el~~~i~~~~~ 168 (274)
T 3i8s_A 108 --------------LL--ELGIPCIVALNMLDIAEKQNIRIEIDALSARLGCPVIPLVSTRGRGIEALKLAIDRYKA 168 (274)
T ss_dssp --------------HH--HHTCCEEEEEECHHHHHHTTEEECHHHHHHHHTSCEEECCCGGGHHHHHHHHHHHTCCC
T ss_pred --------------HH--hcCCCEEEEEECccchhhhhHHHHHHHHHHhcCCCEEEEEcCCCCCHHHHHHHHHHHHh
Confidence 00 0135999999999986432 2233322 246899999999999999999987653
No 67
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=99.74 E-value=2.1e-18 Score=190.34 Aligned_cols=173 Identities=15% Similarity=0.144 Sum_probs=119.5
Q ss_pred CCCCeEEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCccccccccccccceEEEECCEeecccCccccccccccCcccc
Q 018394 8 AGEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRG 87 (356)
Q Consensus 8 ~~~s~~v~~~~g~~v~LvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~~D~pGl~~~~~~~~~~~ 87 (356)
+++||++.+ |+++||+|+||||||||+++|+|...| ..|.|.++|.++..++...+ ...+++.
T Consensus 1050 ~~vsl~i~~--Ge~v~ivG~sGsGKSTl~~~l~g~~~p-----------~~G~I~i~g~~i~~~~~~~~----r~~i~~v 1112 (1284)
T 3g5u_A 1050 QGLSLEVKK--GQTLALVGSSGCGKSTVVQLLERFYDP-----------MAGSVFLDGKEIKQLNVQWL----RAQLGIV 1112 (1284)
T ss_dssp SSCCEEECS--SSEEEEECSSSTTHHHHHHHHTTSSCC-----------SEEEEESSSSCTTSSCHHHH----TTSCEEE
T ss_pred cceeEEEcC--CCEEEEECCCCCCHHHHHHHHhcCcCC-----------CCCEEEECCEEcccCCHHHH----HhceEEE
Confidence 689999999 889999999999999999999999876 89999999998875554322 2345666
Q ss_pred ccccccccchhHHHHHHhcCC-hHHHHHHHHHHHHHccC--c-----------cccccCcccccceecccee--------
Q 018394 88 RQVIAVSKSSDIVLMVLDASK-SEGHRQILTKELEAVGL--R-----------LNKRPPQIYFKKKKTGGIS-------- 145 (356)
Q Consensus 88 ~~~~~~~~~~d~i~~v~d~~~-~~~~~~~i~~~L~~~~i--~-----------l~~~~~~lS~g~~qr~~ia-------- 145 (356)
.|....+.. .+...+.-... .....+.+.+.++..++ . +......||+||+||++||
T Consensus 1113 ~Q~~~l~~~-ti~eNi~~~~~~~~~~~~~i~~~~~~~~~~~~i~~l~~gldt~vge~G~~LSgGq~Qrv~iARal~~~p~ 1191 (1284)
T 3g5u_A 1113 SQEPILFDC-SIAENIAYGDNSRVVSYEEIVRAAKEANIHQFIDSLPDKYNTRVGDKGTQLSGGQKQRIAIARALVRQPH 1191 (1284)
T ss_dssp ESSCCCCSS-BHHHHHTCCCSSCCCCHHHHHHHHHHHTCHHHHSSTTTGGGCBCSTTSCSSCHHHHHHHHHHHHHHHCCS
T ss_pred CCCCccccc-cHHHHHhccCCCCCCCHHHHHHHHHHhCcHHHHHhCccccccccCCCCCccCHHHHHHHHHHHHHHcCCC
Confidence 665544432 22222211110 00112234444554444 1 2233468999999999998
Q ss_pred -eeecCCCCCCCHHHH---HHHHHHhcccCcEEEEccCCCHHHHHHHHhccccccceEEEeecCCCC
Q 018394 146 -FNSTLPLTHVDEKLC---YQILHEYKIHNAEVLFREDATVDDLIDVIEGNRKYMKCVYVYNKIDVI 208 (356)
Q Consensus 146 -l~~DEp~~~LD~~~~---~~il~~l~~~~~~i~~thd~~~~~~~~~i~~~~~~~p~i~v~NK~Dl~ 208 (356)
+++||||++||.... .+.++.+..+.|+++++||.+... .++.|+|+.+.-+.
T Consensus 1192 iLiLDEpTs~lD~~~~~~i~~~l~~~~~~~tvi~isH~l~~i~----------~~dri~vl~~G~i~ 1248 (1284)
T 3g5u_A 1192 ILLLDEATSALDTESEKVVQEALDKAREGRTCIVIAHRLSTIQ----------NADLIVVIQNGKVK 1248 (1284)
T ss_dssp SEEEESCSSSCCHHHHHHHHHHHHHHSSSSCEEEECSCTTGGG----------SCSEEEEEETBEEE
T ss_pred EEEEeCCcccCCHHHHHHHHHHHHHhCCCCEEEEEecCHHHHH----------cCCEEEEEECCEEE
Confidence 999999999999874 444555445679999999987532 24778888876544
No 68
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=99.74 E-value=1e-18 Score=164.65 Aligned_cols=155 Identities=25% Similarity=0.320 Sum_probs=105.8
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcCCC-CccccccccccccceEEEECCEeecccCccccc-cccc-cCccccccccccccc
Q 018394 20 GRVALIGFPSVGKSTLLTLLTGTHS-EAASYEFTTLTCIPGIIHYNDTKIQLLDLPGII-EGAS-EGKGRGRQVIAVSKS 96 (356)
Q Consensus 20 ~~v~LvG~~gaGKSTLln~L~g~~~-~vs~~p~TT~~~~~G~i~~~g~~i~~~D~pGl~-~~~~-~~~~~~~~~~~~~~~ 96 (356)
..|+|+|+||||||||+|+|+|... .+++.|+||++...|.+..++.++.++||||+. .... ....+.......++.
T Consensus 9 ~~VaIvG~~nvGKSTLln~L~g~~~~i~s~~~~tTr~~~~gi~~~~~~~i~~iDTpG~~~~~~~~l~~~~~~~~~~~l~~ 88 (301)
T 1ega_A 9 GFIAIVGRPNVGKSTLLNKLLGQKISITSRKAQTTRHRIVGIHTEGAYQAIYVDTPGLHMEEKRAINRLMNKAASSSIGD 88 (301)
T ss_dssp EEEEEECSSSSSHHHHHHHHHTCSEEECCCCSSCCSSCEEEEEEETTEEEEEESSSSCCHHHHHHHHHHHTCCTTSCCCC
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCccccCCCCCcceeeEEEEEEECCeeEEEEECcCCCccchhhHHHHHHHHHHHHHhc
Confidence 4899999999999999999999874 578899999999999999999999999999975 2110 000111122334455
Q ss_pred hhHHHHHHhcCChHHHHHHHHHHHHHccCccccccCcccccceeccceeeeecCCCCCCCHHHHHHHHHHhcccCcEEEE
Q 018394 97 SDIVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNAEVLF 176 (356)
Q Consensus 97 ~d~i~~v~d~~~~~~~~~~i~~~L~~~~i~l~~~~~~lS~g~~qr~~ial~~DEp~~~LD~~~~~~il~~l~~~~~~i~~ 176 (356)
+|++++++|+.. ....+ ..+++.
T Consensus 89 ~D~vl~Vvd~~~-~~~~~----------------------------------------------~~i~~~---------- 111 (301)
T 1ega_A 89 VELVIFVVEGTR-WTPDD----------------------------------------------EMVLNK---------- 111 (301)
T ss_dssp EEEEEEEEETTC-CCHHH----------------------------------------------HHHHHH----------
T ss_pred CCEEEEEEeCCC-CCHHH----------------------------------------------HHHHHH----------
Confidence 666666655533 11100 011111
Q ss_pred ccCCCHHHHHHHHhccccccceEEEeecCCCCC-hhhH----HHHhcC---CCEEEeccccccchHHHHHHHHHHhC
Q 018394 177 REDATVDDLIDVIEGNRKYMKCVYVYNKIDVIG-IDDV----DKLARQ---PNSVVISCNLKLNLDRLLARMWEEMG 245 (356)
Q Consensus 177 thd~~~~~~~~~i~~~~~~~p~i~v~NK~Dl~~-~~~~----~~l~~~---~~~i~iSa~~~~~l~~L~~~i~~~l~ 245 (356)
+. ....|.++|+||+|+.. ...+ ..+.+. ..++++||+++.|+++|.+.+.+.+.
T Consensus 112 ------------l~--~~~~P~ilvlNK~D~~~~~~~~~~~l~~l~~~~~~~~~i~iSA~~g~~v~~l~~~i~~~l~ 174 (301)
T 1ega_A 112 ------------LR--EGKAPVILAVNKVDNVQEKADLLPHLQFLASQMNFLDIVPISAETGLNVDTIAAIVRKHLP 174 (301)
T ss_dssp ------------HH--SSSSCEEEEEESTTTCCCHHHHHHHHHHHHTTSCCSEEEECCTTTTTTHHHHHHHHHTTCC
T ss_pred ------------HH--hcCCCEEEEEECcccCccHHHHHHHHHHHHHhcCcCceEEEECCCCCCHHHHHHHHHHhCC
Confidence 11 11369999999999986 3322 333322 24899999999999999999988764
No 69
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=99.74 E-value=4.7e-18 Score=173.91 Aligned_cols=158 Identities=13% Similarity=0.145 Sum_probs=103.6
Q ss_pred CCCCeEEEec---CCcEEEEEcCCCCcHHHHHHHHHcCCCCccccccccccccceEEEECCEeecccCccccccccccCc
Q 018394 8 AGEGFEVTKF---GHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGK 84 (356)
Q Consensus 8 ~~~s~~v~~~---~g~~v~LvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~~D~pGl~~~~~~~~ 84 (356)
++++|++..+ .|++++|+|+||||||||+++|+|...| ..|.. +....+
T Consensus 364 ~~vsl~v~~G~~~~GEiv~iiG~NGsGKSTLlk~l~Gl~~p-----------~~G~~-~~~~~i---------------- 415 (608)
T 3j16_B 364 GDFVLNVEEGEFSDSEILVMMGENGTGKTTLIKLLAGALKP-----------DEGQD-IPKLNV---------------- 415 (608)
T ss_dssp SSCEEEECCEECCTTCEEEEESCTTSSHHHHHHHHHTSSCC-----------SBCCC-CCSCCE----------------
T ss_pred CceEEEEecCccccceEEEEECCCCCcHHHHHHHHhcCCCC-----------CCCcC-ccCCcE----------------
Confidence 4788988883 1278999999999999999999999877 34431 001001
Q ss_pred ccccccccc---ccchhHHHHHHhcCChHHHHHHHHHHHHHccC--ccccccCcccccceecccee---------eeecC
Q 018394 85 GRGRQVIAV---SKSSDIVLMVLDASKSEGHRQILTKELEAVGL--RLNKRPPQIYFKKKKTGGIS---------FNSTL 150 (356)
Q Consensus 85 ~~~~~~~~~---~~~~d~i~~v~d~~~~~~~~~~i~~~L~~~~i--~l~~~~~~lS~g~~qr~~ia---------l~~DE 150 (356)
++..|.... ....+++... ..........+.++|+.+++ .+++++.+||+||+||++|| +++||
T Consensus 416 ~~~~q~~~~~~~~tv~e~~~~~--~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~LSGGqkQRv~iAraL~~~p~lLlLDE 493 (608)
T 3j16_B 416 SMKPQKIAPKFPGTVRQLFFKK--IRGQFLNPQFQTDVVKPLRIDDIIDQEVQHLSGGELQRVAIVLALGIPADIYLIDE 493 (608)
T ss_dssp EEECSSCCCCCCSBHHHHHHHH--CSSTTTSHHHHHHTHHHHTSTTTSSSBSSSCCHHHHHHHHHHHHTTSCCSEEEECC
T ss_pred EEecccccccCCccHHHHHHHH--hhcccccHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEEC
Confidence 111111100 0112222111 11111123456778889998 68899999999999999998 99999
Q ss_pred CCCCCCHHHHH---HHHHHhc--ccCcEEEEccCCCHHHHHHHHhccccccceEEEeec
Q 018394 151 PLTHVDEKLCY---QILHEYK--IHNAEVLFREDATVDDLIDVIEGNRKYMKCVYVYNK 204 (356)
Q Consensus 151 p~~~LD~~~~~---~il~~l~--~~~~~i~~thd~~~~~~~~~i~~~~~~~p~i~v~NK 204 (356)
||++||+.... ++++.+. .+.+++++|||..+... ....+++++.
T Consensus 494 PT~gLD~~~~~~i~~ll~~l~~~~g~tviivtHdl~~~~~---------~aDrvivl~~ 543 (608)
T 3j16_B 494 PSAYLDSEQRIICSKVIRRFILHNKKTAFIVEHDFIMATY---------LADKVIVFEG 543 (608)
T ss_dssp TTTTCCHHHHHHHHHHHHHHHHHHTCEEEEECSCHHHHHH---------HCSEEEECEE
T ss_pred CCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHH---------hCCEEEEEeC
Confidence 99999998754 4555553 35699999999765432 2366777653
No 70
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=99.73 E-value=2.2e-18 Score=170.57 Aligned_cols=60 Identities=25% Similarity=0.327 Sum_probs=48.6
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHcCCC-CccccccccccccceEEEECCEeecccCcccccc
Q 018394 19 HGRVALIGFPSVGKSTLLTLLTGTHS-EAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIE 78 (356)
Q Consensus 19 g~~v~LvG~~gaGKSTLln~L~g~~~-~vs~~p~TT~~~~~G~i~~~g~~i~~~D~pGl~~ 78 (356)
...++|+|+||||||||+|+|+|... .++++||||+++..|.+.++|.++.++||||+..
T Consensus 180 ~~kvaivG~~gvGKSTLln~l~g~~~~~v~~~~gtT~d~~~~~i~~~g~~~~l~Dt~G~~~ 240 (439)
T 1mky_A 180 AIKVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGRKYVFVDTAGLRR 240 (439)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEEEETTEEEEESSCSCC--
T ss_pred CceEEEECCCCCCHHHHHHHHhCCcccccCCCCCCcCCceEEEEEECCEEEEEEECCCCcc
Confidence 36899999999999999999999874 5899999999999999999999999999999853
No 71
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=99.73 E-value=2.4e-18 Score=189.97 Aligned_cols=171 Identities=13% Similarity=0.142 Sum_probs=121.4
Q ss_pred CCCCeEEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCccccccccccccceEEEECCEeecccCccccccccccCcccc
Q 018394 8 AGEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRG 87 (356)
Q Consensus 8 ~~~s~~v~~~~g~~v~LvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~~D~pGl~~~~~~~~~~~ 87 (356)
+++||++++ |+.+||+|+||||||||+++|+|...| ..|.|.++|.++..++...++. .++++
T Consensus 407 ~~isl~i~~--G~~~~ivG~sGsGKSTl~~ll~g~~~~-----------~~G~i~i~g~~i~~~~~~~~r~----~i~~v 469 (1284)
T 3g5u_A 407 KGLNLKVKS--GQTVALVGNSGCGKSTTVQLMQRLYDP-----------LDGMVSIDGQDIRTINVRYLRE----IIGVV 469 (1284)
T ss_dssp EEEEEEECT--TCEEEEECCSSSSHHHHHHHTTTSSCC-----------SEEEEEETTEEGGGSCHHHHHH----HEEEE
T ss_pred ecceEEEcC--CCEEEEECCCCCCHHHHHHHHhCCCCC-----------CCeEEEECCEEHHhCCHHHHHh----heEEE
Confidence 578999999 889999999999999999999999876 8999999999988776544332 35556
Q ss_pred ccccccccc--hhHHHHHHhcCChHHHHHHHHHHHHHccC-------------ccccccCcccccceecccee-------
Q 018394 88 RQVIAVSKS--SDIVLMVLDASKSEGHRQILTKELEAVGL-------------RLNKRPPQIYFKKKKTGGIS------- 145 (356)
Q Consensus 88 ~~~~~~~~~--~d~i~~v~d~~~~~~~~~~i~~~L~~~~i-------------~l~~~~~~lS~g~~qr~~ia------- 145 (356)
.|....+.. .+++.+...... .+.+.+.++..++ .+......||+||+||++||
T Consensus 470 ~Q~~~l~~~ti~eNi~~g~~~~~----~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGq~QriaiARal~~~p 545 (1284)
T 3g5u_A 470 SQEPVLFATTIAENIRYGREDVT----MDEIEKAVKEANAYDFIMKLPHQFDTLVGERGAQLSGGQKQRIAIARALVRNP 545 (1284)
T ss_dssp CSSCCCCSSCHHHHHHHHCSSCC----HHHHHHHHHHTTCHHHHHHSTTGGGCCCSSSSCSSCHHHHHHHHHHHHHHHCC
T ss_pred cCCCccCCccHHHHHhcCCCCCC----HHHHHHHHHHhCcHHHHHhccccccccccCCCCccCHHHHHHHHHHHHHhcCC
Confidence 665554433 445444321111 1223333333222 34455678999999999998
Q ss_pred --eeecCCCCCCCHHHHH---HHHHHhcccCcEEEEccCCCHHHHHHHHhccccccceEEEeecCCCCC
Q 018394 146 --FNSTLPLTHVDEKLCY---QILHEYKIHNAEVLFREDATVDDLIDVIEGNRKYMKCVYVYNKIDVIG 209 (356)
Q Consensus 146 --l~~DEp~~~LD~~~~~---~il~~l~~~~~~i~~thd~~~~~~~~~i~~~~~~~p~i~v~NK~Dl~~ 209 (356)
+++||||++||++... +.++.+..+.|+++++|+.+... ..+.|+|+.+.-+..
T Consensus 546 ~iliLDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~l~~i~----------~~d~i~vl~~G~i~~ 604 (1284)
T 3g5u_A 546 KILLLDEATSALDTESEAVVQAALDKAREGRTTIVIAHRLSTVR----------NADVIAGFDGGVIVE 604 (1284)
T ss_dssp SEEEEESTTCSSCHHHHHHHHHHHHHHHTTSEEEEECSCHHHHT----------TCSEEEECSSSCCCC
T ss_pred CEEEEECCCCCCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHH----------cCCEEEEEECCEEEE
Confidence 9999999999998744 44444445679999999965321 247888988876653
No 72
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=99.73 E-value=7.6e-19 Score=177.90 Aligned_cols=156 Identities=13% Similarity=0.070 Sum_probs=96.3
Q ss_pred CCCCeEEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCccccccccccccceEE---------EECCEeecccCcccccc
Q 018394 8 AGEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGII---------HYNDTKIQLLDLPGIIE 78 (356)
Q Consensus 8 ~~~s~~v~~~~g~~v~LvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i---------~~~g~~i~~~D~pGl~~ 78 (356)
.+++ .+.+ |+++||+|+|||||||||++|+|...| ..|.+ .++|..++....+..
T Consensus 39 ~~vs-~i~~--Ge~~~LvG~NGaGKSTLlk~l~Gl~~p-----------~~G~~~~~~~~~~~~~~g~~~~~~~~~~~-- 102 (538)
T 1yqt_A 39 YRLP-VVKE--GMVVGIVGPNGTGKSTAVKILAGQLIP-----------NLCGDNDSWDGVIRAFRGNELQNYFEKLK-- 102 (538)
T ss_dssp ECCC-CCCT--TSEEEEECCTTSSHHHHHHHHHTSSCC-----------CTTTTCCSHHHHHHHTTTSTHHHHHHHHH--
T ss_pred cCcC-cCCC--CCEEEEECCCCCCHHHHHHHHhCCCCC-----------CCCccCcchhhhHHhhCCccHHHHHHHHH--
Confidence 3555 6667 889999999999999999999999866 33331 123332221000000
Q ss_pred ccccCccccccccccccc---hhHHHHHHhcCChHHHHHHHHHHHHHccC--ccccccCcccccceecccee--------
Q 018394 79 GASEGKGRGRQVIAVSKS---SDIVLMVLDASKSEGHRQILTKELEAVGL--RLNKRPPQIYFKKKKTGGIS-------- 145 (356)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~---~d~i~~v~d~~~~~~~~~~i~~~L~~~~i--~l~~~~~~lS~g~~qr~~ia-------- 145 (356)
......++..|....... ..+...+... ...+++.+.|+.+|+ .+++++.+||+||+||+.||
T Consensus 103 ~~~~~~~~~~q~~~~~~~~~~~~v~e~~~~~----~~~~~~~~~l~~lgl~~~~~~~~~~LSgGekQRv~iAraL~~~P~ 178 (538)
T 1yqt_A 103 NGEIRPVVKPQYVDLIPKAVKGKVIELLKKA----DETGKLEEVVKALELENVLEREIQHLSGGELQRVAIAAALLRNAT 178 (538)
T ss_dssp TTSCCCEEECSCGGGSGGGCCSBHHHHHHHH----CSSSCHHHHHHHTTCTTTTTSBGGGCCHHHHHHHHHHHHHHSCCS
T ss_pred HHhhhhhhhhhhhhhcchhhhccHHHHHhhh----hHHHHHHHHHHHcCCChhhhCChhhCCHHHHHHHHHHHHHhcCCC
Confidence 000111121221111110 0111111110 112346788999998 67889999999999999998
Q ss_pred -eeecCCCCCCCHHHHHH---HHHHhcc-cCcEEEEccCCCHH
Q 018394 146 -FNSTLPLTHVDEKLCYQ---ILHEYKI-HNAEVLFREDATVD 183 (356)
Q Consensus 146 -l~~DEp~~~LD~~~~~~---il~~l~~-~~~~i~~thd~~~~ 183 (356)
+++||||++||+..... +|+.+.. +.++|++|||....
T Consensus 179 lLlLDEPTs~LD~~~~~~l~~~L~~l~~~g~tvi~vsHd~~~~ 221 (538)
T 1yqt_A 179 FYFFDEPSSYLDIRQRLNAARAIRRLSEEGKSVLVVEHDLAVL 221 (538)
T ss_dssp EEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHHHH
T ss_pred EEEEECCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHH
Confidence 99999999999987554 4555543 56999999996543
No 73
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=99.73 E-value=1.7e-18 Score=147.90 Aligned_cols=59 Identities=37% Similarity=0.588 Sum_probs=49.7
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcCCCCccccccccccccceEEEECCEeecccCcccccc
Q 018394 20 GRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIE 78 (356)
Q Consensus 20 ~~v~LvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~~D~pGl~~ 78 (356)
..|+|+|+||||||||+|+|+|....++++|++|++...+.+.+++..+.++||||...
T Consensus 4 ~~v~lvG~~gvGKStL~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~l~i~Dt~G~~~ 62 (165)
T 2wji_A 4 YEIALIGNPNVGKSTIFNALTGENVYIGNWPGVTVEKKEGEFEYNGEKFKVVDLPGVYS 62 (165)
T ss_dssp EEEEEECSTTSSHHHHHHHHHCCSSSCC-----CCCCCEEEEEETTEEEEEEECCCCSC
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCeeccCCCCcceeeeEEEEEECCcEEEEEECCCccc
Confidence 47999999999999999999998878889999999999999999999999999999643
No 74
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=99.73 E-value=8.4e-19 Score=162.90 Aligned_cols=180 Identities=22% Similarity=0.307 Sum_probs=113.5
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcCCCCccccccccccccceEEEECCEeecccCccccccccccCc--cccccccccccch
Q 018394 20 GRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGK--GRGRQVIAVSKSS 97 (356)
Q Consensus 20 ~~v~LvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~~D~pGl~~~~~~~~--~~~~~~~~~~~~~ 97 (356)
..|+|+|+||||||||||+|+|....++++||+|+++..|.+.. +..+.++||||......... .....+. ....+
T Consensus 4 ~kI~lvG~~nvGKSTL~n~L~g~~~~v~~~pg~tv~~~~~~~~~-~~~l~l~DtpG~~~~~~~~~~e~v~~~~~-~~~~~ 81 (272)
T 3b1v_A 4 TEIALIGNPNSGKTSLFNLITGHNQRVGNWPGVTVERKSGLVKK-NKDLEIQDLPGIYSMSPYSPEAKVARDYL-LSQRA 81 (272)
T ss_dssp EEEEEECCTTSSHHHHHHHHHCCCCCCCSSSCCCCSCEEEECTT-CTTEEEEECCCCSCSSCSSHHHHHHHHHH-HTTCC
T ss_pred eEEEEECCCCCCHHHHHHHHHCCCCcccCCCCCcEEEEEEEEec-CCeEEEEECCCcCccCCCChHHHHHHHHH-hcCCC
Confidence 57999999999999999999999888999999999999888766 77889999999753211000 0001111 01235
Q ss_pred hHHHHHHhcCChHHHHHHHHHHHHHccCccccccCcccccceeccceeeeecCCCCCCCHHHHHHHHHHhcccCcEEEEc
Q 018394 98 DIVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNAEVLFR 177 (356)
Q Consensus 98 d~i~~v~d~~~~~~~~~~i~~~L~~~~i~l~~~~~~lS~g~~qr~~ial~~DEp~~~LD~~~~~~il~~l~~~~~~i~~t 177 (356)
|++++|+|++...... .+..+
T Consensus 82 d~vi~V~D~t~~e~~~------------------------------------------------~~~~~----------- 102 (272)
T 3b1v_A 82 DSILNVVDATNLERNL------------------------------------------------YLTTQ----------- 102 (272)
T ss_dssp SEEEEEEEGGGHHHHH------------------------------------------------HHHHH-----------
T ss_pred CEEEEEecCCchHhHH------------------------------------------------HHHHH-----------
Confidence 5555555554321110 00000
Q ss_pred cCCCHHHHHHHHhccccccceEEEeecCCCCChh----hHHHHhc--CCCEEEeccccccchHHHHHHHHHHhCceEEEe
Q 018394 178 EDATVDDLIDVIEGNRKYMKCVYVYNKIDVIGID----DVDKLAR--QPNSVVISCNLKLNLDRLLARMWEEMGLVRVYT 251 (356)
Q Consensus 178 hd~~~~~~~~~i~~~~~~~p~i~v~NK~Dl~~~~----~~~~l~~--~~~~i~iSa~~~~~l~~L~~~i~~~l~~i~~~~ 251 (356)
+. ....|+++|+||+|+.... +...+.. ..+++++||++|.|+++|.+.+.+.+..
T Consensus 103 -----------l~--~~~~p~ilv~NK~Dl~~~~~~~~~~~~l~~~lg~~vi~~SA~~g~gi~el~~~i~~~~~~----- 164 (272)
T 3b1v_A 103 -----------LI--ETGIPVTIALNMIDVLDGQGKKINVDKLSYHLGVPVVATSALKQTGVDQVVKKAAHTTTS----- 164 (272)
T ss_dssp -----------HH--HTCSCEEEEEECHHHHHHTTCCCCHHHHHHHHTSCEEECBTTTTBSHHHHHHHHHHSCTT-----
T ss_pred -----------HH--hcCCCEEEEEEChhhCCcCCcHHHHHHHHHHcCCCEEEEEccCCCCHHHHHHHHHHHHhh-----
Confidence 00 0135999999999985321 2233322 2368999999999999999999876532
Q ss_pred CCCCCCCCCCccEEeecCCCCCCHHHHHHHHHHhHhh
Q 018394 252 KPQGQQPDFTEPVVLSVDRGGCTVEDFCNHIHRSLVK 288 (356)
Q Consensus 252 ~~~~~~p~~~~~~~~~~~r~g~~v~~~a~~ih~~l~~ 288 (356)
+ ...+..+.. +..++.+...+...+..
T Consensus 165 ------~-~~~~~~~~~---~~~~e~~i~~~~~~~~~ 191 (272)
T 3b1v_A 165 ------T-VGDLAFPIY---DDRLEAAISQILEVLGN 191 (272)
T ss_dssp ------T-CCSCCCCCC---CHHHHHHHHHHHHHHGG
T ss_pred ------c-cCCCccCCC---CHHHHHHHHHHHHHHhh
Confidence 0 011211222 55667777766666643
No 75
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=99.72 E-value=3.4e-18 Score=189.19 Aligned_cols=178 Identities=16% Similarity=0.153 Sum_probs=130.0
Q ss_pred CCCCeEEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCccccccccccccceEEEECCEeecccCccccccccccCcccc
Q 018394 8 AGEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRG 87 (356)
Q Consensus 8 ~~~s~~v~~~~g~~v~LvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~~D~pGl~~~~~~~~~~~ 87 (356)
+++||++++ |+.+||||++|||||||+++|.|...| ..|.|.++|.++.-++..-++. .++++
T Consensus 435 ~~isl~i~~--G~~vaivG~sGsGKSTll~ll~~~~~~-----------~~G~I~idG~~i~~~~~~~lr~----~i~~v 497 (1321)
T 4f4c_A 435 RGMNLRVNA--GQTVALVGSSGCGKSTIISLLLRYYDV-----------LKGKITIDGVDVRDINLEFLRK----NVAVV 497 (1321)
T ss_dssp EEEEEEECT--TCEEEEEECSSSCHHHHHHHHTTSSCC-----------SEEEEEETTEETTTSCHHHHHH----HEEEE
T ss_pred eceEEeecC--CcEEEEEecCCCcHHHHHHHhcccccc-----------ccCcccCCCccchhccHHHHhh----ccccc
Confidence 588999999 889999999999999999999999866 8999999999998877655433 34566
Q ss_pred ccccccccc--hhHHHHHHhcCChHHHHHHHHHHHHHccC-------------ccccccCcccccceecccee-------
Q 018394 88 RQVIAVSKS--SDIVLMVLDASKSEGHRQILTKELEAVGL-------------RLNKRPPQIYFKKKKTGGIS------- 145 (356)
Q Consensus 88 ~~~~~~~~~--~d~i~~v~d~~~~~~~~~~i~~~L~~~~i-------------~l~~~~~~lS~g~~qr~~ia------- 145 (356)
.|....+.. .|+|.+... ....+.+.+.++..++ .+...-..|||||+||++||
T Consensus 498 ~Q~~~Lf~~TI~eNI~~g~~----~~~~~~v~~a~~~a~l~~~i~~lp~G~~T~vGe~G~~LSGGQkQRiaiARAl~~~~ 573 (1321)
T 4f4c_A 498 SQEPALFNCTIEENISLGKE----GITREEMVAACKMANAEKFIKTLPNGYNTLVGDRGTQLSGGQKQRIAIARALVRNP 573 (1321)
T ss_dssp CSSCCCCSEEHHHHHHTTCT----TCCHHHHHHHHHHTTCHHHHHHSTTTTSSEESSSSCCCCHHHHHHHHHHHHHTTCC
T ss_pred CCcceeeCCchhHHHhhhcc----cchHHHHHHHHHHccchhHHHcCCCCCccEecCCCCCCCHHHHHHHHHHHHHccCC
Confidence 666655543 556544321 1123345555555543 23344568999999999999
Q ss_pred --eeecCCCCCCCHHH---HHHHHHHhcccCcEEEEccCCCHHHHHHHHhccccccceEEEeecCCCCChhhHHHH
Q 018394 146 --FNSTLPLTHVDEKL---CYQILHEYKIHNAEVLFREDATVDDLIDVIEGNRKYMKCVYVYNKIDVIGIDDVDKL 216 (356)
Q Consensus 146 --l~~DEp~~~LD~~~---~~~il~~l~~~~~~i~~thd~~~~~~~~~i~~~~~~~p~i~v~NK~Dl~~~~~~~~l 216 (356)
+++||||++||.++ +.+.+..+..+.|+|+++|+.+... ..+.|+|+++.-+......++|
T Consensus 574 ~IliLDE~tSaLD~~te~~i~~~l~~~~~~~T~iiiaHrls~i~----------~aD~Iivl~~G~ive~Gth~eL 639 (1321)
T 4f4c_A 574 KILLLDEATSALDAESEGIVQQALDKAAKGRTTIIIAHRLSTIR----------NADLIISCKNGQVVEVGDHRAL 639 (1321)
T ss_dssp SEEEEESTTTTSCTTTHHHHHHHHHHHHTTSEEEEECSCTTTTT----------TCSEEEEEETTEEEEEECHHHH
T ss_pred CEEEEecccccCCHHHHHHHHHHHHHHhCCCEEEEEcccHHHHH----------hCCEEEEeeCCeeeccCCHHHH
Confidence 99999999999865 5555666666789999999976432 3578899988766543333333
No 76
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=99.72 E-value=1.2e-18 Score=178.39 Aligned_cols=155 Identities=12% Similarity=0.078 Sum_probs=96.0
Q ss_pred CCCeEEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCccccccccccccceEE---------EECCEeecccCccccccc
Q 018394 9 GEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGII---------HYNDTKIQLLDLPGIIEG 79 (356)
Q Consensus 9 ~~s~~v~~~~g~~v~LvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i---------~~~g~~i~~~D~pGl~~~ 79 (356)
+++ .+.+ |++++|+|+|||||||||++|+|...| ..|.+ .++|.+++..... .. .
T Consensus 110 ~vs-~i~~--Ge~~~LiG~NGsGKSTLlkiL~Gll~p-----------~~G~~~~~~~~~~~~~~G~~~~~~~~~-~~-~ 173 (607)
T 3bk7_A 110 RLP-IVKD--GMVVGIVGPNGTGKTTAVKILAGQLIP-----------NLCEDNDSWDNVIRAFRGNELQNYFER-LK-N 173 (607)
T ss_dssp CCC-CCCT--TSEEEEECCTTSSHHHHHHHHTTSSCC-----------CTTTTCCCHHHHHHHTTTSTHHHHHHH-HH-H
T ss_pred CCC-CCCC--CCEEEEECCCCChHHHHHHHHhCCCCC-----------CCCccccccchhhheeCCEehhhhhhh-hh-h
Confidence 455 5666 789999999999999999999999866 33432 1233322110000 00 0
Q ss_pred cccCccccccccccccc---hhHHHHHHhcCChHHHHHHHHHHHHHccC--ccccccCcccccceecccee---------
Q 018394 80 ASEGKGRGRQVIAVSKS---SDIVLMVLDASKSEGHRQILTKELEAVGL--RLNKRPPQIYFKKKKTGGIS--------- 145 (356)
Q Consensus 80 ~~~~~~~~~~~~~~~~~---~d~i~~v~d~~~~~~~~~~i~~~L~~~~i--~l~~~~~~lS~g~~qr~~ia--------- 145 (356)
.....++..|....... ..+..++ .... ..+.+.+.|+.+|+ .+++++.+||+||+||++||
T Consensus 174 ~~~~i~~~~q~~~~~~~~~~~tv~e~l-~~~~---~~~~~~~~L~~lgL~~~~~~~~~~LSGGekQRvaIAraL~~~P~l 249 (607)
T 3bk7_A 174 GEIRPVVKPQYVDLLPKAVKGKVRELL-KKVD---EVGKFEEVVKELELENVLDRELHQLSGGELQRVAIAAALLRKAHF 249 (607)
T ss_dssp TSCCCEEECSCGGGGGGTCCSBHHHHH-HHTC---CSSCHHHHHHHTTCTTGGGSBGGGCCHHHHHHHHHHHHHHSCCSE
T ss_pred hhcceEEeechhhhchhhccccHHHHh-hhhH---HHHHHHHHHHHcCCCchhCCChhhCCHHHHHHHHHHHHHhcCCCE
Confidence 00111111221111000 0111111 1111 12346788999999 68899999999999999998
Q ss_pred eeecCCCCCCCHHHHHH---HHHHhcc-cCcEEEEccCCCHH
Q 018394 146 FNSTLPLTHVDEKLCYQ---ILHEYKI-HNAEVLFREDATVD 183 (356)
Q Consensus 146 l~~DEp~~~LD~~~~~~---il~~l~~-~~~~i~~thd~~~~ 183 (356)
+++||||++||+..... +|+.+.. +.++|++|||....
T Consensus 250 LlLDEPTs~LD~~~~~~l~~~L~~l~~~g~tvIivsHdl~~~ 291 (607)
T 3bk7_A 250 YFFDEPSSYLDIRQRLKVARVIRRLANEGKAVLVVEHDLAVL 291 (607)
T ss_dssp EEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHHHH
T ss_pred EEEECCcccCCHHHHHHHHHHHHHHHhcCCEEEEEecChHHH
Confidence 99999999999987544 4555543 56999999997543
No 77
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=99.71 E-value=2.3e-18 Score=158.75 Aligned_cols=182 Identities=26% Similarity=0.316 Sum_probs=117.1
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcCCCCccccccccccccceEEEECCEeecccCccccccccccCc--cccccccccccch
Q 018394 20 GRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGK--GRGRQVIAVSKSS 97 (356)
Q Consensus 20 ~~v~LvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~~D~pGl~~~~~~~~--~~~~~~~~~~~~~ 97 (356)
..|+|+|.||||||||||+|+|....++++||+|++...|.+.+.+..+.++||||......... .....++ ....+
T Consensus 6 ~kI~lvG~~nvGKTsL~n~l~g~~~~~~~~pg~tv~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~e~v~~~~~-~~~~~ 84 (258)
T 3a1s_A 6 VKVALAGCPNVGKTSLFNALTGTKQYVANWPGVTVEKKEGVFTYKGYTINLIDLPGTYSLGYSSIDEKIARDYL-LKGDA 84 (258)
T ss_dssp EEEEEECCTTSSHHHHHHHHHTTCEEEEECTTSCCEEEEEEEEETTEEEEEEECCCCSSCCSSSHHHHHHHHHH-HHSCC
T ss_pred eEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceEEEEEEEEEECCeEEEEEECCCcCccCCCCHHHHHHHHHH-hhcCC
Confidence 57999999999999999999999878999999999999999999999999999999753211100 0000110 01345
Q ss_pred hHHHHHHhcCChHHHHHHHHHHHHHccCccccccCcccccceeccceeeeecCCCCCCCHHHHHHHHHHhcccCcEEEEc
Q 018394 98 DIVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNAEVLFR 177 (356)
Q Consensus 98 d~i~~v~d~~~~~~~~~~i~~~L~~~~i~l~~~~~~lS~g~~qr~~ial~~DEp~~~LD~~~~~~il~~l~~~~~~i~~t 177 (356)
|++++|+|+....... .++..
T Consensus 85 d~ii~V~D~t~~~~~~------------------------------------------------~~~~~----------- 105 (258)
T 3a1s_A 85 DLVILVADSVNPEQSL------------------------------------------------YLLLE----------- 105 (258)
T ss_dssp SEEEEEEETTSCHHHH------------------------------------------------HHHHH-----------
T ss_pred CEEEEEeCCCchhhHH------------------------------------------------HHHHH-----------
Confidence 5555555554422111 01110
Q ss_pred cCCCHHHHHHHHhccccccceEEEeecCCCCChh----hHHHHhc--CCCEEEeccccccchHHHHHHHHHHhCceEEEe
Q 018394 178 EDATVDDLIDVIEGNRKYMKCVYVYNKIDVIGID----DVDKLAR--QPNSVVISCNLKLNLDRLLARMWEEMGLVRVYT 251 (356)
Q Consensus 178 hd~~~~~~~~~i~~~~~~~p~i~v~NK~Dl~~~~----~~~~l~~--~~~~i~iSa~~~~~l~~L~~~i~~~l~~i~~~~ 251 (356)
+. ....|+++|+||+|+.... +...+.+ ..+++++||++|.|+++|.+.+.+.+..
T Consensus 106 -----------l~--~~~~pvilv~NK~Dl~~~~~i~~~~~~l~~~lg~~vi~~SA~~g~gi~el~~~i~~~~~~----- 167 (258)
T 3a1s_A 106 -----------IL--EMEKKVILAMTAIDEAKKTGMKIDRYELQKHLGIPVVFTSSVTGEGLEELKEKIVEYAQK----- 167 (258)
T ss_dssp -----------HH--TTTCCEEEEEECHHHHHHTTCCBCHHHHHHHHCSCEEECCTTTCTTHHHHHHHHHHHHHS-----
T ss_pred -----------HH--hcCCCEEEEEECcCCCCccchHHHHHHHHHHcCCCEEEEEeeCCcCHHHHHHHHHHHhhc-----
Confidence 11 1136999999999985321 2233322 2468999999999999999999876531
Q ss_pred CCCCCCCCCCccEEeecCCCCCCHHHHHHHHHHhHhh
Q 018394 252 KPQGQQPDFTEPVVLSVDRGGCTVEDFCNHIHRSLVK 288 (356)
Q Consensus 252 ~~~~~~p~~~~~~~~~~~r~g~~v~~~a~~ih~~l~~ 288 (356)
+....|..+.. +..++.....+...+..
T Consensus 168 ------~~~~~~~~~~y---~~~~~~~i~~~~~~~~~ 195 (258)
T 3a1s_A 168 ------NTILHRMILDY---GEKVESEIKKVENFLRD 195 (258)
T ss_dssp ------SSCSCCCCCCC---CHHHHHHHHHHHHHHTT
T ss_pred ------cccCCCcccCC---chhHHHHHHHHHHHHhh
Confidence 00111222233 55566677777666643
No 78
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=99.71 E-value=4.7e-19 Score=179.17 Aligned_cols=148 Identities=14% Similarity=0.085 Sum_probs=91.5
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHcCCCCccccccccccccceEE-----------EECCEeecccCccccccccccCcccc
Q 018394 19 HGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGII-----------HYNDTKIQLLDLPGIIEGASEGKGRG 87 (356)
Q Consensus 19 g~~v~LvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i-----------~~~g~~i~~~D~pGl~~~~~~~~~~~ 87 (356)
|+++||+|||||||||||++|+|...| ..|.+ .+.|.++...-.. ... ........
T Consensus 25 Gei~gLiGpNGaGKSTLlkiL~Gl~~p-----------~~G~i~~~~~~~~~~~~~~g~~i~~~~~~-~~~-~~~~~~~~ 91 (538)
T 3ozx_A 25 NTILGVLGKNGVGKTTVLKILAGEIIP-----------NFGDPNSKVGKDEVLKRFRGKEIYNYFKE-LYS-NELKIVHK 91 (538)
T ss_dssp TEEEEEECCTTSSHHHHHHHHTTSSCC-----------CTTCTTSCCCHHHHHHHHTTSTTHHHHHH-HHT-TCCCEEEE
T ss_pred CCEEEEECCCCCcHHHHHHHHhcCCCC-----------CCCccccccchhhHHhhcCCeeHHHHHHH-Hhh-cccchhhc
Confidence 689999999999999999999999876 44544 2333322110000 000 00000000
Q ss_pred cccccccc---chhHHHHHHhcCChHHHHHHHHHHHHHccC--ccccccCcccccceecccee---------eeecCCCC
Q 018394 88 RQVIAVSK---SSDIVLMVLDASKSEGHRQILTKELEAVGL--RLNKRPPQIYFKKKKTGGIS---------FNSTLPLT 153 (356)
Q Consensus 88 ~~~~~~~~---~~d~i~~v~d~~~~~~~~~~i~~~L~~~~i--~l~~~~~~lS~g~~qr~~ia---------l~~DEp~~ 153 (356)
.+...... ...+...+... ...+.+.+.++.+++ ..++++.+||+||+||+.|| +++||||+
T Consensus 92 ~~~~~~~~~~~~~~v~~~l~~~----~~~~~~~~~l~~l~l~~~~~~~~~~LSgGe~Qrv~iA~aL~~~p~illlDEPts 167 (538)
T 3ozx_A 92 IQYVEYASKFLKGTVNEILTKI----DERGKKDEVKELLNMTNLWNKDANILSGGGLQRLLVAASLLREADVYIFDQPSS 167 (538)
T ss_dssp CSCTTGGGTTCCSBHHHHHHHH----CCSSCHHHHHHHTTCGGGTTSBGGGCCHHHHHHHHHHHHHHSCCSEEEEESTTT
T ss_pred cchhhhhhhhccCcHHHHhhcc----hhHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEECCcc
Confidence 11110000 00111111111 111246678888998 67899999999999999998 99999999
Q ss_pred CCCHHHHH---HHHHHhcccCcEEEEccCCCHH
Q 018394 154 HVDEKLCY---QILHEYKIHNAEVLFREDATVD 183 (356)
Q Consensus 154 ~LD~~~~~---~il~~l~~~~~~i~~thd~~~~ 183 (356)
+||+.... ++++.+..+.++|++|||....
T Consensus 168 ~LD~~~~~~l~~~l~~l~~g~tii~vsHdl~~~ 200 (538)
T 3ozx_A 168 YLDVRERMNMAKAIRELLKNKYVIVVDHDLIVL 200 (538)
T ss_dssp TCCHHHHHHHHHHHHHHCTTSEEEEECSCHHHH
T ss_pred cCCHHHHHHHHHHHHHHhCCCEEEEEEeChHHH
Confidence 99998754 4555555566999999997543
No 79
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=99.70 E-value=6.1e-18 Score=156.64 Aligned_cols=185 Identities=19% Similarity=0.263 Sum_probs=118.9
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcCCCCccccccccccccceEEEECCEeecccCccccccccccCcc-ccccccccccchh
Q 018394 20 GRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKG-RGRQVIAVSKSSD 98 (356)
Q Consensus 20 ~~v~LvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~~D~pGl~~~~~~~~~-~~~~~~~~~~~~d 98 (356)
..|+|+|+||||||||+|+|+|....++++|++|++...+.+.+++..+.++||||.......... ...........+|
T Consensus 4 ~~i~lvG~~g~GKTTL~n~l~g~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~d 83 (271)
T 3k53_A 4 KTVALVGNPNVGKTTIFNALTGLRQHVGNWPGVTVEKKEGIMEYREKEFLVVDLPGIYSLTAHSIDELIARNFILDGNAD 83 (271)
T ss_dssp EEEEEEECSSSSHHHHHHHHHTTCEEEEECTTSSCEEEEEEEEETTEEEEEEECCCCSCCCSSCHHHHHHHHHHHTTCCS
T ss_pred eEEEEECCCCCCHHHHHHHHhCCCcccCCCCCeEEEeeEEEEEECCceEEEEeCCCccccccCCHHHHHHHHhhhccCCc
Confidence 579999999999999999999998889999999999999999999999999999997542211000 0000011123455
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHHccCccccccCcccccceeccceeeeecCCCCCCCHHHHHHHHHHhcccCcEEEEcc
Q 018394 99 IVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNAEVLFRE 178 (356)
Q Consensus 99 ~i~~v~d~~~~~~~~~~i~~~L~~~~i~l~~~~~~lS~g~~qr~~ial~~DEp~~~LD~~~~~~il~~l~~~~~~i~~th 178 (356)
++++++|+......... ..
T Consensus 84 ~vi~v~D~~~~~~~~~~------------------------------------------------~~------------- 102 (271)
T 3k53_A 84 VIVDIVDSTCLMRNLFL------------------------------------------------TL------------- 102 (271)
T ss_dssp EEEEEEEGGGHHHHHHH------------------------------------------------HH-------------
T ss_pred EEEEEecCCcchhhHHH------------------------------------------------HH-------------
Confidence 55555555442111000 00
Q ss_pred CCCHHHHHHHHhccccccceEEEeecCCCCChh----hHHHHhc--CCCEEEeccccccchHHHHHHHHHHhCceEEEeC
Q 018394 179 DATVDDLIDVIEGNRKYMKCVYVYNKIDVIGID----DVDKLAR--QPNSVVISCNLKLNLDRLLARMWEEMGLVRVYTK 252 (356)
Q Consensus 179 d~~~~~~~~~i~~~~~~~p~i~v~NK~Dl~~~~----~~~~l~~--~~~~i~iSa~~~~~l~~L~~~i~~~l~~i~~~~~ 252 (356)
.+.. ....|+++|+||+|+.... +...+.+ ..+++++||.+|.|+++|.+.+.+.+...
T Consensus 103 ---------~~~~-~~~~p~ilv~NK~Dl~~~~~~~~~~~~l~~~lg~~~~~~Sa~~g~gi~~l~~~i~~~~~~~----- 167 (271)
T 3k53_A 103 ---------ELFE-MEVKNIILVLNKFDLLKKKGAKIDIKKMRKELGVPVIPTNAKKGEGVEELKRMIALMAEGK----- 167 (271)
T ss_dssp ---------HHHH-TTCCSEEEEEECHHHHHHHTCCCCHHHHHHHHSSCEEECBGGGTBTHHHHHHHHHHHHHTC-----
T ss_pred ---------HHHh-cCCCCEEEEEEChhcCcccccHHHHHHHHHHcCCcEEEEEeCCCCCHHHHHHHHHHHHhcc-----
Confidence 0000 0015999999999975322 1223321 24689999999999999999998876321
Q ss_pred CCCCCCCCCccEEeecCCCCCCHHHHHHHHHHhHhhc
Q 018394 253 PQGQQPDFTEPVVLSVDRGGCTVEDFCNHIHRSLVKD 289 (356)
Q Consensus 253 ~~~~~p~~~~~~~~~~~r~g~~v~~~a~~ih~~l~~~ 289 (356)
. ...+..... ...+++++..+...+.+.
T Consensus 168 -----~-~~~~~~~~~---~~~~e~~~~~l~~~~~~~ 195 (271)
T 3k53_A 168 -----V-TTNPIIPRY---DEDIEREIKHISELLRGT 195 (271)
T ss_dssp -----C-CCCCCCCCC---CHHHHHHHHHHHHHHHSS
T ss_pred -----c-cCCCCCcCC---CHHHHHHHHHHHHHHhhc
Confidence 0 001111122 556778888877776654
No 80
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=99.69 E-value=4.7e-18 Score=167.99 Aligned_cols=204 Identities=20% Similarity=0.216 Sum_probs=117.3
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHcCCC-CccccccccccccceEEEECCEeecccCccccccccccCc--cc--ccccccc
Q 018394 19 HGRVALIGFPSVGKSTLLTLLTGTHS-EAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGK--GR--GRQVIAV 93 (356)
Q Consensus 19 g~~v~LvG~~gaGKSTLln~L~g~~~-~vs~~p~TT~~~~~G~i~~~g~~i~~~D~pGl~~~~~~~~--~~--~~~~~~~ 93 (356)
...|+|+|.||||||||+|+|+|... .++++||||++.....+.++|..+.++||||++....... .. .......
T Consensus 175 ~~ki~lvG~~nvGKSSLin~l~~~~~~~~~~~~gtT~d~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~e~~~~~~~~~~ 254 (436)
T 2hjg_A 175 VIQFCLIGRPNVGKSSLVNAMLGEERVIVSNVAGTTRDAVDTSFTYNQQEFVIVDTAGMRKKGKVYETTEKYSVLRALKA 254 (436)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHTSTTEEEC---------CCEEEEETTEEEEETTHHHHTCBTTBCCCCSHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHhCCCceeecCCCCceeeeeEEEEEECCeEEEEEECCCcCcCccccchHHHHHHHHHHHH
Confidence 36899999999999999999999875 4899999999999999999999999999999864321100 00 0000112
Q ss_pred ccchhHHHHHHhcCChHHHHHHHHHHHHHccCccccccCcccccceeccceeeeecCCCCCCCHHHHHHHHHHhcccCcE
Q 018394 94 SKSSDIVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNAE 173 (356)
Q Consensus 94 ~~~~d~i~~v~d~~~~~~~~~~i~~~L~~~~i~l~~~~~~lS~g~~qr~~ial~~DEp~~~LD~~~~~~il~~l~~~~~~ 173 (356)
++.+|++++|+|+..+.. .... .++.
T Consensus 255 ~~~ad~~llv~D~~~~~s---------------------------------------------~~~~-~~~~-------- 280 (436)
T 2hjg_A 255 IDRSEVVAVVLDGEEGII---------------------------------------------EQDK-RIAG-------- 280 (436)
T ss_dssp HHHCSEEEEEEETTTCCC---------------------------------------------HHHH-HHHH--------
T ss_pred HHhCCEEEEEEcCCcCCc---------------------------------------------HHHH-HHHH--------
Confidence 233344444444433211 1110 1111
Q ss_pred EEEccCCCHHHHHHHHhccccccceEEEeecCCCCChhh-----H-HHHh------cCCCEEEeccccccchHHHHHHHH
Q 018394 174 VLFREDATVDDLIDVIEGNRKYMKCVYVYNKIDVIGIDD-----V-DKLA------RQPNSVVISCNLKLNLDRLLARMW 241 (356)
Q Consensus 174 i~~thd~~~~~~~~~i~~~~~~~p~i~v~NK~Dl~~~~~-----~-~~l~------~~~~~i~iSa~~~~~l~~L~~~i~ 241 (356)
.+. ...+|+++|+||+|+..... . +.+. ...+++++||++|.|+++|.+.+.
T Consensus 281 --------------~~~--~~~~~iiiv~NK~Dl~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~SA~tg~~v~~l~~~i~ 344 (436)
T 2hjg_A 281 --------------YAH--EAGKAVVIVVNKWDAVDKDESTMKEFEENIRDHFQFLDYAPILFMSALTKKRIHTLMPAII 344 (436)
T ss_dssp --------------HHH--HTTCEEEEEEECGGGSCCCTTHHHHHHHHHHHHCGGGTTSCEEECCTTTCTTGGGHHHHHH
T ss_pred --------------HHH--HcCCcEEEEEECccCCCcchHHHHHHHHHHHHhcccCCCCCEEEEecccCCCHHHHHHHHH
Confidence 111 11369999999999975322 1 1111 134689999999999999887776
Q ss_pred HHhCce--EEEe--------------CCC---CC--------CCCCCccEEeecCCCCCCHHHHHHHHHHhHhhcCcEeE
Q 018394 242 EEMGLV--RVYT--------------KPQ---GQ--------QPDFTEPVVLSVDRGGCTVEDFCNHIHRSLVKDVKYVL 294 (356)
Q Consensus 242 ~~l~~i--~~~~--------------~~~---~~--------~p~~~~~~~~~~~r~g~~v~~~a~~ih~~l~~~f~~a~ 294 (356)
+.+... ++-| .+| +. .....+|.++-. .+....+-..+.++|.+.|+.++
T Consensus 345 ~~~~~~~~~~~t~~ln~~l~~~~~~~~pp~~~~~~~~i~y~~q~~~~pp~~~~~---~n~~~~~~~~y~r~l~~~~r~~~ 421 (436)
T 2hjg_A 345 KASENHSLRVQTNVLNDVIMDAVAMNPTPTHNGSRLKIYYATQVSVKPPSFVVF---VNDPELMHFSYERFLENRIRDAF 421 (436)
T ss_dssp HHHHHHTCCCCHHHHHHHHHHHHHHSCCCEETTEECCEEEEEEEETTTTEEEEE---ESCGGGCCHHHHHHHHHHHHHHH
T ss_pred HHHHHhhcCCCHHHHHHHHHHHHHhCCCCccCCcceeEEeEecCCCCCCEEEEE---eCCcccCCHHHHHHHHHHHHHHc
Confidence 544310 0000 000 00 011233555555 56667788888999999988876
Q ss_pred E
Q 018394 295 V 295 (356)
Q Consensus 295 ~ 295 (356)
.
T Consensus 422 ~ 422 (436)
T 2hjg_A 422 G 422 (436)
T ss_dssp C
T ss_pred C
Confidence 5
No 81
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=99.69 E-value=1.2e-17 Score=140.72 Aligned_cols=155 Identities=23% Similarity=0.291 Sum_probs=92.9
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcCCC-CccccccccccccceEEEECCEeecccCccccccccccCccccccccccccchh
Q 018394 20 GRVALIGFPSVGKSTLLTLLTGTHS-EAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQVIAVSKSSD 98 (356)
Q Consensus 20 ~~v~LvG~~gaGKSTLln~L~g~~~-~vs~~p~TT~~~~~G~i~~~g~~i~~~D~pGl~~~~~~~~~~~~~~~~~~~~~d 98 (356)
..|+++|++|||||||+|.+++... .++++|++|.+.....+.+++..+.++||||..................++.+|
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~ 81 (161)
T 2dyk_A 2 HKVVIVGRPNVGKSSLFNRLLKKRSAVVADVPGVTRDLKEGVVETDRGRFLLVDTGGLWSGDKWEKKIQEKVDRALEDAE 81 (161)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHCCC-----------CCEEEEEEETTEEEEEEECGGGCSSSSCCHHHHHHHHHHTTTCS
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCeeeccCCCCceecceEEEEEeCCceEEEEECCCCCCccchHHHHHHHHHHHHHhCC
Confidence 3789999999999999999998874 478899999999999999999999999999975321100000011112234455
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHHccCccccccCcccccceeccceeeeecCCCCCCCHHHHHHHHHHhcccCcEEEEcc
Q 018394 99 IVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNAEVLFRE 178 (356)
Q Consensus 99 ~i~~v~d~~~~~~~~~~i~~~L~~~~i~l~~~~~~lS~g~~qr~~ial~~DEp~~~LD~~~~~~il~~l~~~~~~i~~th 178 (356)
++++++|......... ..+.++++
T Consensus 82 ~~i~v~d~~~~~~~~~-------------------------------------------~~~~~~~~------------- 105 (161)
T 2dyk_A 82 VVLFAVDGRAELTQAD-------------------------------------------YEVAEYLR------------- 105 (161)
T ss_dssp EEEEEEESSSCCCHHH-------------------------------------------HHHHHHHH-------------
T ss_pred EEEEEEECCCcccHhH-------------------------------------------HHHHHHHH-------------
Confidence 5555555433211000 00111111
Q ss_pred CCCHHHHHHHHhccccccceEEEeecCCCCChh-hHHHHhc--CCCEEEeccccccchHHHHHHHHHHh
Q 018394 179 DATVDDLIDVIEGNRKYMKCVYVYNKIDVIGID-DVDKLAR--QPNSVVISCNLKLNLDRLLARMWEEM 244 (356)
Q Consensus 179 d~~~~~~~~~i~~~~~~~p~i~v~NK~Dl~~~~-~~~~l~~--~~~~i~iSa~~~~~l~~L~~~i~~~l 244 (356)
....|+++|+||+|+.... +...+.+ ..+++++||+++.|++++.+.+.+.+
T Consensus 106 --------------~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~l 160 (161)
T 2dyk_A 106 --------------RKGKPVILVATKVDDPKHELYLGPLYGLGFGDPIPTSSEHARGLEELLEAIWERL 160 (161)
T ss_dssp --------------HHTCCEEEEEECCCSGGGGGGCGGGGGGSSCSCEECBTTTTBSHHHHHHHHHHHC
T ss_pred --------------hcCCCEEEEEECcccccchHhHHHHHhCCCCCeEEEecccCCChHHHHHHHHHhC
Confidence 0135999999999997542 2222322 23589999999999999999988765
No 82
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=99.68 E-value=5.8e-18 Score=173.26 Aligned_cols=71 Identities=14% Similarity=0.122 Sum_probs=59.0
Q ss_pred HHHHHHHHHccC--ccccccCcccccceecccee---------eeecCCCCCCCHHHHHH---HHHHhcc-cCcEEEEcc
Q 018394 114 QILTKELEAVGL--RLNKRPPQIYFKKKKTGGIS---------FNSTLPLTHVDEKLCYQ---ILHEYKI-HNAEVLFRE 178 (356)
Q Consensus 114 ~~i~~~L~~~~i--~l~~~~~~lS~g~~qr~~ia---------l~~DEp~~~LD~~~~~~---il~~l~~-~~~~i~~th 178 (356)
+.+.+.|+.+++ .+++++.+||+||+||++|| +++||||++||+..... +++.+.. +.++|++||
T Consensus 200 ~~~~~~l~~~gl~~~~~~~~~~LSgGe~Qrv~iAraL~~~p~llllDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vtH 279 (608)
T 3j16_B 200 EDVKRYIKILQLENVLKRDIEKLSGGELQRFAIGMSCVQEADVYMFDEPSSYLDVKQRLNAAQIIRSLLAPTKYVICVEH 279 (608)
T ss_dssp HHHHHHHHHHTCTGGGGSCTTTCCHHHHHHHHHHHHHHSCCSEEEEECTTTTCCHHHHHHHHHHHHGGGTTTCEEEEECS
T ss_pred HHHHHHHHHcCCcchhCCChHHCCHHHHHHHHHHHHHHhCCCEEEEECcccCCCHHHHHHHHHHHHHHHhCCCEEEEEeC
Confidence 567888999999 78999999999999999998 99999999999987544 5555543 459999999
Q ss_pred CCCHHH
Q 018394 179 DATVDD 184 (356)
Q Consensus 179 d~~~~~ 184 (356)
|.....
T Consensus 280 dl~~~~ 285 (608)
T 3j16_B 280 DLSVLD 285 (608)
T ss_dssp CHHHHH
T ss_pred CHHHHH
Confidence 976543
No 83
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=99.68 E-value=1.7e-17 Score=172.30 Aligned_cols=65 Identities=14% Similarity=0.207 Sum_probs=52.1
Q ss_pred HHHHHccC---ccccccCcccccceecccee-----------eeecCCCCCCCHHHHHHH---HHHhc-ccCcEEEEccC
Q 018394 118 KELEAVGL---RLNKRPPQIYFKKKKTGGIS-----------FNSTLPLTHVDEKLCYQI---LHEYK-IHNAEVLFRED 179 (356)
Q Consensus 118 ~~L~~~~i---~l~~~~~~lS~g~~qr~~ia-----------l~~DEp~~~LD~~~~~~i---l~~l~-~~~~~i~~thd 179 (356)
..|+.+|+ .+++++.+||+||+||+.|| +++||||++||+.....+ ++.+. .+.|+|++|||
T Consensus 184 ~~l~~~gL~~~~~~~~~~~LSGGe~QRv~iArAL~~~p~~~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~g~tvi~vtHd 263 (670)
T 3ux8_A 184 GFLQNVGLDYLTLSRSAGTLSGGEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQRDNDRLIATLKSMRDLGNTLIVVEHD 263 (670)
T ss_dssp HHHHHTTCTTCCTTCBGGGSCHHHHHHHHHHHHHHTCCCSCEEEEECTTTTCCGGGHHHHHHHHHHHHHTTCEEEEECCC
T ss_pred HHHHHcCCchhhhcCCcccCCHHHHHHHHHHHHHhhCCCCCEEEEECCccCCCHHHHHHHHHHHHHHHHcCCEEEEEeCC
Confidence 34777888 36899999999999999987 888999999999875544 44554 34699999999
Q ss_pred CCH
Q 018394 180 ATV 182 (356)
Q Consensus 180 ~~~ 182 (356)
...
T Consensus 264 ~~~ 266 (670)
T 3ux8_A 264 EDT 266 (670)
T ss_dssp HHH
T ss_pred HHH
Confidence 754
No 84
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=99.66 E-value=1.2e-16 Score=153.80 Aligned_cols=163 Identities=25% Similarity=0.276 Sum_probs=112.3
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHcCCCCccccccccccccceEEEECCEeecccCccccccccccCccccccccccccchh
Q 018394 19 HGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQVIAVSKSSD 98 (356)
Q Consensus 19 g~~v~LvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~~D~pGl~~~~~~~~~~~~~~~~~~~~~d 98 (356)
...++++|+||||||||+|.|++....++++||+|.++..+.+...+..+.++||||+....... .+
T Consensus 167 ~~~v~lvG~~gvGKSTLin~L~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~-------------~~ 233 (357)
T 2e87_A 167 IPTVVIAGHPNVGKSTLLKALTTAKPEIASYPFTTRGINVGQFEDGYFRYQIIDTPGLLDRPISE-------------RN 233 (357)
T ss_dssp SCEEEEECSTTSSHHHHHHHHCSSCCEEECCTTCSSCEEEEEEEETTEEEEEEECTTTSSSCSTT-------------SC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCCccCCCCCeeeceeEEEEEecCceEEEEeCCCccccchhh-------------hh
Confidence 46899999999999999999999987788999999999999998899999999999975321100 00
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHHccCccccccCcccccceeccceeeeec-CCCCCCCHHHHHHHHHHhcccCcEEEEc
Q 018394 99 IVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNST-LPLTHVDEKLCYQILHEYKIHNAEVLFR 177 (356)
Q Consensus 99 ~i~~v~d~~~~~~~~~~i~~~L~~~~i~l~~~~~~lS~g~~qr~~ial~~D-Ep~~~LD~~~~~~il~~l~~~~~~i~~t 177 (356)
.+. ...+. .+ . .....+-++.| ++..++|......++..+..
T Consensus 234 ~~~-----------~~~~~----~~----~----------~~ad~illV~D~s~~~~~~~~~~~~~~~~i~~-------- 276 (357)
T 2e87_A 234 EIE-----------KQAIL----AL----R----------YLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHG-------- 276 (357)
T ss_dssp HHH-----------HHHHH----GG----G----------GTCSEEEEEECTTCTTSSCHHHHHHHHHHHHH--------
T ss_pred HHH-----------HHHHH----HH----H----------hcCCEEEEEEeCCccccCCHHHHHHHHHHHHH--------
Confidence 000 00000 00 0 00012335566 67777777766666554321
Q ss_pred cCCCHHHHHHHHhccccccceEEEeecCCCCChhhHHHHh-----cCCCEEEeccccccchHHHHHHHHHHhC
Q 018394 178 EDATVDDLIDVIEGNRKYMKCVYVYNKIDVIGIDDVDKLA-----RQPNSVVISCNLKLNLDRLLARMWEEMG 245 (356)
Q Consensus 178 hd~~~~~~~~~i~~~~~~~p~i~v~NK~Dl~~~~~~~~l~-----~~~~~i~iSa~~~~~l~~L~~~i~~~l~ 245 (356)
.. ..+|+++|+||+|+.....++... ...+++++||++|.|+++|.+.+.+.+.
T Consensus 277 -----------~~---~~~piilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~iSA~~g~gi~~l~~~i~~~l~ 335 (357)
T 2e87_A 277 -----------EF---KDLPFLVVINKIDVADEENIKRLEKFVKEKGLNPIKISALKGTGIDLVKEEIIKTLR 335 (357)
T ss_dssp -----------HT---TTSCEEEEECCTTTCCHHHHHHHHHHHHHTTCCCEECBTTTTBTHHHHHHHHHHHHH
T ss_pred -----------hc---CCCCEEEEEECcccCChHHHHHHHHHHHhcCCCeEEEeCCCCcCHHHHHHHHHHHHH
Confidence 00 146999999999998765443321 1346899999999999999999988764
No 85
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=99.66 E-value=1.1e-17 Score=149.29 Aligned_cols=59 Identities=24% Similarity=0.218 Sum_probs=50.6
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHcCC--CCccccccccccccceEEE-ECCEeecccCccccc
Q 018394 19 HGRVALIGFPSVGKSTLLTLLTGTH--SEAASYEFTTLTCIPGIIH-YNDTKIQLLDLPGII 77 (356)
Q Consensus 19 g~~v~LvG~~gaGKSTLln~L~g~~--~~vs~~p~TT~~~~~G~i~-~~g~~i~~~D~pGl~ 77 (356)
...|+|+|.+|||||||+|.|++.. ..++++|+||++.....+. .++..+.++||||+.
T Consensus 29 ~~~i~v~G~~~~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~ 90 (223)
T 4dhe_A 29 QPEIAFAGRSNAGKSTAINVLCNQKRLAFASKTPGRTQHINYFSVGPAAEPVAHLVDLPGYG 90 (223)
T ss_dssp SCEEEEEESCHHHHHHHHHHHTTCSSSSCTTCCCCSCCCEEEEEESCTTSCSEEEEECCCCC
T ss_pred CCEEEEEcCCCCCHHHHHHHHhCCCcceeecCCCCcccceEEEEecCCCCCcEEEEcCCCCC
Confidence 4689999999999999999999986 4789999999998766654 456789999999974
No 86
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=99.66 E-value=1.5e-16 Score=165.36 Aligned_cols=79 Identities=13% Similarity=0.114 Sum_probs=60.6
Q ss_pred HHHHHHHHHccC---ccccccCcccccceecccee------------eeecCCCCCCCHHHHHHH---HHHhcc-cCcEE
Q 018394 114 QILTKELEAVGL---RLNKRPPQIYFKKKKTGGIS------------FNSTLPLTHVDEKLCYQI---LHEYKI-HNAEV 174 (356)
Q Consensus 114 ~~i~~~L~~~~i---~l~~~~~~lS~g~~qr~~ia------------l~~DEp~~~LD~~~~~~i---l~~l~~-~~~~i 174 (356)
....+.|+.+++ .+++++.+||+||+||++|| +++||||++||+....++ ++.+.. +.|+|
T Consensus 521 ~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~iAraL~~~p~~p~llllDEPt~~LD~~~~~~i~~~l~~l~~~g~tvi 600 (670)
T 3ux8_A 521 KRKLETLYDVGLGYMKLGQPATTLSGGEAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVDNGDTVL 600 (670)
T ss_dssp HHHHHHHHHTTCTTSBTTCCGGGCCHHHHHHHHHHHHHHSCCCSCEEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEE
T ss_pred HHHHHHHHHcCCchhhccCCchhCCHHHHHHHHHHHHHhhCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEE
Confidence 445677888887 46788999999999999887 788999999999885554 444443 56999
Q ss_pred EEccCCCHHHHHHHHhccccccceEEEe
Q 018394 175 LFREDATVDDLIDVIEGNRKYMKCVYVY 202 (356)
Q Consensus 175 ~~thd~~~~~~~~~i~~~~~~~p~i~v~ 202 (356)
++|||++... +++.++++
T Consensus 601 ~vtHd~~~~~----------~~d~i~~l 618 (670)
T 3ux8_A 601 VIEHNLDVIK----------TADYIIDL 618 (670)
T ss_dssp EECCCHHHHT----------TCSEEEEE
T ss_pred EEeCCHHHHH----------hCCEEEEe
Confidence 9999975322 24677787
No 87
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=99.65 E-value=2.5e-17 Score=142.75 Aligned_cols=58 Identities=38% Similarity=0.596 Sum_probs=54.2
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcCCCCccccccccccccceEEEECCEeecccCccccc
Q 018394 20 GRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGII 77 (356)
Q Consensus 20 ~~v~LvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~~D~pGl~ 77 (356)
..|+|+|++|||||||+|.|++....++++|++|+++..+.+.+++..+.++||||..
T Consensus 8 ~~i~lvG~~gvGKStL~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~ 65 (188)
T 2wjg_A 8 YEIALIGNPNVGKSTIFNALTGENVYIGNWPGVTVEKKEGEFEYNGEKFKVVDLPGVY 65 (188)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTTCEEEEECTTSCCEEEEEEEEETTEEEEEEECCCCS
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCccccCCCCeeccceEEEEEeCCcEEEEEECCCcC
Confidence 5899999999999999999999887788999999999999999999999999999964
No 88
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=99.65 E-value=2.6e-18 Score=169.85 Aligned_cols=156 Identities=21% Similarity=0.244 Sum_probs=86.0
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcCC-CCccccccccccccceEEEECCEeecccCccccccccccC-ccccccccccccch
Q 018394 20 GRVALIGFPSVGKSTLLTLLTGTH-SEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEG-KGRGRQVIAVSKSS 97 (356)
Q Consensus 20 ~~v~LvG~~gaGKSTLln~L~g~~-~~vs~~p~TT~~~~~G~i~~~g~~i~~~D~pGl~~~~~~~-~~~~~~~~~~~~~~ 97 (356)
..|+|+|+||||||||||.|+|.. +.++++||+|+|...+.+.++|..+.++||||+......- ..+..+....++.+
T Consensus 4 ~~V~ivG~~nvGKStL~n~l~~~~~~~v~~~~g~T~d~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~~a 83 (436)
T 2hjg_A 4 PVVAIVGRPNVGKSTIFNRIAGERISIVEDTPGVTRDRIYSSAEWLNYDFNLIDTGGIDIGDEPFLAQIRQQAEIAMDEA 83 (436)
T ss_dssp CEEEEECSTTSSHHHHHHHHEEEECC-----------CEEEECTTCSSCCEEEC---------CHHHHHHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCceeecCCCCCccceEEEEEEECCceEEEEECCCCCCcchhHHHHHHHHHHHHHHhC
Confidence 479999999999999999999976 4589999999999999999999999999999975221000 00011112223344
Q ss_pred hHHHHHHhcCChHHHHHHHHHHHHHccCccccccCcccccceeccceeeeecCCCCCCCHHHHHHHHHHhcccCcEEEEc
Q 018394 98 DIVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNAEVLFR 177 (356)
Q Consensus 98 d~i~~v~d~~~~~~~~~~i~~~L~~~~i~l~~~~~~lS~g~~qr~~ial~~DEp~~~LD~~~~~~il~~l~~~~~~i~~t 177 (356)
|++++|+|+..+ +.... ..+
T Consensus 84 d~il~vvD~~~~---------------------------------------------~~~~d-~~~-------------- 103 (436)
T 2hjg_A 84 DVIIFMVNGREG---------------------------------------------VTAAD-EEV-------------- 103 (436)
T ss_dssp SEEEEEEETTTC---------------------------------------------SCHHH-HHH--------------
T ss_pred CEEEEEEeCCCC---------------------------------------------CCHHH-HHH--------------
Confidence 444444444322 11110 001
Q ss_pred cCCCHHHHHHHHhccccccceEEEeecCCCCChh-hHHHHh--cCCCEEEeccccccchHHHHHHHHHHhC
Q 018394 178 EDATVDDLIDVIEGNRKYMKCVYVYNKIDVIGID-DVDKLA--RQPNSVVISCNLKLNLDRLLARMWEEMG 245 (356)
Q Consensus 178 hd~~~~~~~~~i~~~~~~~p~i~v~NK~Dl~~~~-~~~~l~--~~~~~i~iSa~~~~~l~~L~~~i~~~l~ 245 (356)
.+.+. ...+|+++|+||+|+.... +..++. ....++++||++|.|+++|.+.+.+.+.
T Consensus 104 --------~~~l~--~~~~pvilv~NK~D~~~~~~~~~~~~~lg~~~~~~iSA~~g~gv~~L~~~i~~~l~ 164 (436)
T 2hjg_A 104 --------AKILY--RTKKPVVLAVNKLDNTEMRANIYDFYSLGFGEPYPISGTHGLGLGDLLDAVAEHFK 164 (436)
T ss_dssp --------HHHHT--TCCSCEEEEEECCCC-----CCCSSGGGSSCCCEECBTTTTBTHHHHHHHHHHTGG
T ss_pred --------HHHHH--HcCCCEEEEEECccCccchhhHHHHHHcCCCCeEEEeCcCCCChHHHHHHHHHhcC
Confidence 11111 1246999999999987432 111122 2246899999999999999999988764
No 89
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=99.65 E-value=5.5e-17 Score=161.21 Aligned_cols=204 Identities=21% Similarity=0.224 Sum_probs=120.7
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHcCC-CCccccccccccccceEEEECCEeecccCccccccccccCccc----ccccccc
Q 018394 19 HGRVALIGFPSVGKSTLLTLLTGTH-SEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGR----GRQVIAV 93 (356)
Q Consensus 19 g~~v~LvG~~gaGKSTLln~L~g~~-~~vs~~p~TT~~~~~G~i~~~g~~i~~~D~pGl~~~~~~~~~~----~~~~~~~ 93 (356)
...++++|.||+|||||+|+|++.. ..++++||||++.....+.++|..+.++||||++......... .......
T Consensus 195 ~~ki~ivG~~~vGKSslin~l~~~~~~~~~~~~gtt~~~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~e~~~~~~~~~~ 274 (456)
T 4dcu_A 195 VIQFCLIGRPNVGKSSLVNAMLGEERVIVSNVAGTTRDAVDTSFTYNQQEFVIVDTAGMRKKGKVYETTEKYSVLRALKA 274 (456)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHTSTTEEECC------CTTSEEEEETTEEEEETTGGGTTTBTTBCCCCSHHHHHHHHHH
T ss_pred cceeEEecCCCCCHHHHHHHHhCCCccccCCCCCeEEEEEEEEEEECCceEEEEECCCCCcCcccchHHHHHHHHHHHHH
Confidence 4689999999999999999999986 4689999999999999999999999999999986532111000 0001112
Q ss_pred ccchhHHHHHHhcCChHHHHHHHHHHHHHccCccccccCcccccceeccceeeeecCCCCCCCHHHHHHHHHHhcccCcE
Q 018394 94 SKSSDIVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNAE 173 (356)
Q Consensus 94 ~~~~d~i~~v~d~~~~~~~~~~i~~~L~~~~i~l~~~~~~lS~g~~qr~~ial~~DEp~~~LD~~~~~~il~~l~~~~~~ 173 (356)
++.+|++++++|+..... .. ...++.
T Consensus 275 ~~~ad~~llviD~~~~~~---------------------------------------------~~-~~~~~~-------- 300 (456)
T 4dcu_A 275 IDRSEVVAVVLDGEEGII---------------------------------------------EQ-DKRIAG-------- 300 (456)
T ss_dssp HHHCSEEEEEEETTTCCC---------------------------------------------HH-HHHHHH--------
T ss_pred HhhCCEEEEEEeCCCCcC---------------------------------------------HH-HHHHHH--------
Confidence 233344444444332111 10 011111
Q ss_pred EEEccCCCHHHHHHHHhccccccceEEEeecCCCCChh-----hH-HHHh------cCCCEEEeccccccchHHHHHHHH
Q 018394 174 VLFREDATVDDLIDVIEGNRKYMKCVYVYNKIDVIGID-----DV-DKLA------RQPNSVVISCNLKLNLDRLLARMW 241 (356)
Q Consensus 174 i~~thd~~~~~~~~~i~~~~~~~p~i~v~NK~Dl~~~~-----~~-~~l~------~~~~~i~iSa~~~~~l~~L~~~i~ 241 (356)
.+.. ..+|+++|+||+|+.... +. +.+. ...+++++||++|.|+++|.+.+.
T Consensus 301 --------------~~~~--~~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gv~~l~~~i~ 364 (456)
T 4dcu_A 301 --------------YAHE--AGKAVVIVVNKWDAVDKDESTMKEFEENIRDHFQFLDYAPILFMSALTKKRIHTLMPAII 364 (456)
T ss_dssp --------------HHHH--TTCEEEEEEECGGGSCCCSSHHHHHHHHHHHHCGGGTTSCEEECCTTTCTTGGGHHHHHH
T ss_pred --------------HHHH--cCCCEEEEEEChhcCCCchHHHHHHHHHHHHhcccCCCCCEEEEcCCCCcCHHHHHHHHH
Confidence 1111 136999999999997432 11 1111 135689999999999999888876
Q ss_pred HHhCce--EEEe-------------CC-C---CC--------CCCCCccEEeecCCCCCCHHHHHHHHHHhHhhcCcEeE
Q 018394 242 EEMGLV--RVYT-------------KP-Q---GQ--------QPDFTEPVVLSVDRGGCTVEDFCNHIHRSLVKDVKYVL 294 (356)
Q Consensus 242 ~~l~~i--~~~~-------------~~-~---~~--------~p~~~~~~~~~~~r~g~~v~~~a~~ih~~l~~~f~~a~ 294 (356)
+.+... ++-+ .+ | +. .....+|.++-. ++..+.+-..+.++|.+.|+.++
T Consensus 365 ~~~~~~~~~~~t~~ln~~l~~~~~~~~pp~~~~~~~ki~y~~q~~~~pp~~~~~---~n~~~~~~~~y~r~l~~~~r~~~ 441 (456)
T 4dcu_A 365 KASENHSLRVQTNVLNDVIMDAVAMNPTPTHNGSRLKIYYATQVSVKPPSFVVF---VNDPELMHFSYERFLENRIRDAF 441 (456)
T ss_dssp HHHHHHTCCCCHHHHHHHHHHHHHHSCCCEETTEECCEEEEEEEETTTTEEEEE---ESCGGGSCHHHHHHHHHHHHHHH
T ss_pred HHHHHhcccCCHHHHHHHHHHHHHhCCCCCCCCceeeEEEEecCCCCCCEEEEE---ecCcccCCHHHHHHHHHHHHHhC
Confidence 654210 0000 00 0 00 002233555555 56677778888888888888776
Q ss_pred E
Q 018394 295 V 295 (356)
Q Consensus 295 ~ 295 (356)
.
T Consensus 442 ~ 442 (456)
T 4dcu_A 442 G 442 (456)
T ss_dssp C
T ss_pred C
Confidence 5
No 90
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=99.65 E-value=1.2e-16 Score=169.83 Aligned_cols=86 Identities=12% Similarity=0.098 Sum_probs=67.5
Q ss_pred HHHHHHHHHHccC--c--cccccCcccccceecccee---------eeecCCCCCCCHHHHHHHHHHhcc-cCcEEEEcc
Q 018394 113 RQILTKELEAVGL--R--LNKRPPQIYFKKKKTGGIS---------FNSTLPLTHVDEKLCYQILHEYKI-HNAEVLFRE 178 (356)
Q Consensus 113 ~~~i~~~L~~~~i--~--l~~~~~~lS~g~~qr~~ia---------l~~DEp~~~LD~~~~~~il~~l~~-~~~~i~~th 178 (356)
.+.+++.|+.+|+ . .++++..||+||+||+.|| +++||||++||+.....+++.+.. +.++|++||
T Consensus 877 ~~~i~~~Le~lGL~~~~~~~~~~~~LSGGQkQRVaLArAL~~~P~LLLLDEPT~gLD~~s~~~L~~~L~~~g~tVIiISH 956 (986)
T 2iw3_A 877 RKEIEEHCSMLGLDPEIVSHSRIRGLSGGQKVKLVLAAGTWQRPHLIVLDEPTNYLDRDSLGALSKALKEFEGGVIIITH 956 (986)
T ss_dssp HHHHHHHHHHTTCCHHHHHHSCGGGCCHHHHHHHHHHHHHTTCCSEEEEECGGGTCCHHHHHHHHHHHHSCSSEEEEECS
T ss_pred HHHHHHHHHHcCCCchhhcCCCccccCHHHHHHHHHHHHHHhCCCEEEEECCccCCCHHHHHHHHHHHHHhCCEEEEEEC
Confidence 3567889999999 2 4778999999999999998 999999999999998888777763 469999999
Q ss_pred CCCHHHHHHHHhccccccceEEEeecCCC
Q 018394 179 DATVDDLIDVIEGNRKYMKCVYVYNKIDV 207 (356)
Q Consensus 179 d~~~~~~~~~i~~~~~~~p~i~v~NK~Dl 207 (356)
|.+... ..++.++++...-+
T Consensus 957 D~e~v~---------~l~DrVivL~~G~I 976 (986)
T 2iw3_A 957 SAEFTK---------NLTEEVWAVKDGRM 976 (986)
T ss_dssp CHHHHT---------TTCCEEECCBTTBC
T ss_pred CHHHHH---------HhCCEEEEEECCEE
Confidence 964321 13466777765433
No 91
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=99.64 E-value=3.7e-16 Score=133.78 Aligned_cols=151 Identities=22% Similarity=0.207 Sum_probs=104.9
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHcCCCCccccccccccccceEEEECCEeecccCccccccccccCccccccccccccchh
Q 018394 19 HGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQVIAVSKSSD 98 (356)
Q Consensus 19 g~~v~LvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~~D~pGl~~~~~~~~~~~~~~~~~~~~~d 98 (356)
...|+|+|++|||||||+|.|++.......+|++|.+.....+.+++..+.++||||...... .....+..+|
T Consensus 8 ~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~-------~~~~~~~~~d 80 (178)
T 2lkc_A 8 PPVVTIMGHVDHGKTTLLDAIRHSKVTEQEAGGITQHIGAYQVTVNDKKITFLDTPGHEAFTT-------MRARGAQVTD 80 (178)
T ss_dssp CCEEEEESCTTTTHHHHHHHHHTTCSSCSSCCSSSTTCCCCEEEETTEEEEESCCCSSSSSSC-------SCCSSCCCCC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCccccCCCCceeEeeeEEEEEeCCceEEEEECCCCHHHHH-------HHHHHHhhCC
Confidence 468999999999999999999998877777899999999999999999999999999632211 1112345677
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHHccCccccccCcccccceeccceeeeecCCCCCCCHHHHHHHHHHhcccCcEEEEcc
Q 018394 99 IVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNAEVLFRE 178 (356)
Q Consensus 99 ~i~~v~d~~~~~~~~~~i~~~L~~~~i~l~~~~~~lS~g~~qr~~ial~~DEp~~~LD~~~~~~il~~l~~~~~~i~~th 178 (356)
++++++|......... .+.+..
T Consensus 81 ~~i~v~d~~~~~~~~~----------------------------------------------~~~l~~------------ 102 (178)
T 2lkc_A 81 IVILVVAADDGVMPQT----------------------------------------------VEAINH------------ 102 (178)
T ss_dssp EEEEEEETTCCCCHHH----------------------------------------------HHHHHH------------
T ss_pred EEEEEEECCCCCcHHH----------------------------------------------HHHHHH------------
Confidence 7777776544211000 001110
Q ss_pred CCCHHHHHHHHhccccccceEEEeecCCCCCh--hhHHH-HhcC----------CCEEEeccccccchHHHHHHHHHHhC
Q 018394 179 DATVDDLIDVIEGNRKYMKCVYVYNKIDVIGI--DDVDK-LARQ----------PNSVVISCNLKLNLDRLLARMWEEMG 245 (356)
Q Consensus 179 d~~~~~~~~~i~~~~~~~p~i~v~NK~Dl~~~--~~~~~-l~~~----------~~~i~iSa~~~~~l~~L~~~i~~~l~ 245 (356)
+. ....|+++|+||+|+... +++.. +... ..++++||+++.|+++|.+.+.+.+.
T Consensus 103 ----------~~--~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~~~ 170 (178)
T 2lkc_A 103 ----------AK--AANVPIIVAINKMDKPEANPDRVMQELMEYNLVPEEWGGDTIFCKLSAKTKEGLDHLLEMILLVSE 170 (178)
T ss_dssp ----------HG--GGSCCEEEEEETTTSSCSCHHHHHHHHTTTTCCBTTTTSSEEEEECCSSSSHHHHHHHHHHHHHHH
T ss_pred ----------HH--hCCCCEEEEEECccCCcCCHHHHHHHHHhcCcChhHcCCcccEEEEecCCCCCHHHHHHHHHHhhh
Confidence 11 113699999999999753 22222 2111 24789999999999999999887664
Q ss_pred c
Q 018394 246 L 246 (356)
Q Consensus 246 ~ 246 (356)
.
T Consensus 171 ~ 171 (178)
T 2lkc_A 171 M 171 (178)
T ss_dssp H
T ss_pred h
Confidence 3
No 92
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=99.63 E-value=8e-16 Score=131.70 Aligned_cols=151 Identities=21% Similarity=0.175 Sum_probs=103.2
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcCCCCccccccccccccceEEEECC--EeecccCccccccccccCccccccccccccch
Q 018394 20 GRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYND--TKIQLLDLPGIIEGASEGKGRGRQVIAVSKSS 97 (356)
Q Consensus 20 ~~v~LvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g--~~i~~~D~pGl~~~~~~~~~~~~~~~~~~~~~ 97 (356)
..|+|+|++|||||||+|.|++........|.+|.+.....+.+++ ..+.++|+||..... ......++.+
T Consensus 10 ~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~-------~~~~~~~~~~ 82 (181)
T 3tw8_B 10 FKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGEKVKLQIWDTAGQERFR-------TITSTYYRGT 82 (181)
T ss_dssp EEEEEECCTTSCHHHHHHHHCSCC---CCTTTBSEEEEEEEEEETTEEEEEEEEEETTGGGCS-------SCCGGGGTTC
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCccCCCceeEEEEEEEEECCEEEEEEEEcCCCchhhh-------hhHHHHhccC
Confidence 5899999999999999999999876667778899998888999998 567889999953211 1122235678
Q ss_pred hHHHHHHhcCChHHHHHHHHHHHHHccCccccccCcccccceeccceeeeecCCCCCCCHHHHHHHHHHhcccCcEEEEc
Q 018394 98 DIVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNAEVLFR 177 (356)
Q Consensus 98 d~i~~v~d~~~~~~~~~~i~~~L~~~~i~l~~~~~~lS~g~~qr~~ial~~DEp~~~LD~~~~~~il~~l~~~~~~i~~t 177 (356)
|++++|+|...+... +.+..++ ..+.
T Consensus 83 d~~i~v~d~~~~~s~-~~~~~~~--------------------------------------------~~~~--------- 108 (181)
T 3tw8_B 83 HGVIVVYDVTSAESF-VNVKRWL--------------------------------------------HEIN--------- 108 (181)
T ss_dssp SEEEEEEETTCHHHH-HHHHHHH--------------------------------------------HHHH---------
T ss_pred CEEEEEEECCCHHHH-HHHHHHH--------------------------------------------HHHH---------
Confidence 888888887764321 1122221 1111
Q ss_pred cCCCHHHHHHHHhccccccceEEEeecCCCCChh-----hHHHHhc--CCCEEEeccccccchHHHHHHHHHHh
Q 018394 178 EDATVDDLIDVIEGNRKYMKCVYVYNKIDVIGID-----DVDKLAR--QPNSVVISCNLKLNLDRLLARMWEEM 244 (356)
Q Consensus 178 hd~~~~~~~~~i~~~~~~~p~i~v~NK~Dl~~~~-----~~~~l~~--~~~~i~iSa~~~~~l~~L~~~i~~~l 244 (356)
......|+++|+||+|+.... +...+.. ..+++++||++|.|++++.+.+.+.+
T Consensus 109 -------------~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~ 169 (181)
T 3tw8_B 109 -------------QNCDDVCRILVGNKNDDPERKVVETEDAYKFAGQMGIQLFETSAKENVNVEEMFNCITELV 169 (181)
T ss_dssp -------------HHCTTSEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCCEEECBTTTTBSHHHHHHHHHHHH
T ss_pred -------------HhCCCCCEEEEEECCCCchhcccCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 011135999999999986432 2222221 24689999999999999999887765
No 93
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=99.63 E-value=4.3e-16 Score=165.68 Aligned_cols=144 Identities=13% Similarity=0.152 Sum_probs=94.2
Q ss_pred CCCCeEEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCccccccccccccceEEEECCEeecccCccccccccccCcccc
Q 018394 8 AGEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRG 87 (356)
Q Consensus 8 ~~~s~~v~~~~g~~v~LvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~~D~pGl~~~~~~~~~~~ 87 (356)
.++||++.+ |++++|+|+|||||||||++|+|-. +...+.. . ..+ +.+-.. +...
T Consensus 452 ~~vsl~I~~--Ge~v~LiGpNGsGKSTLLk~LagG~--i~g~~~~-~--~~~-~~~v~q-----~~~~------------ 506 (986)
T 2iw3_A 452 NKTQLRLKR--ARRYGICGPNGCGKSTLMRAIANGQ--VDGFPTQ-E--ECR-TVYVEH-----DIDG------------ 506 (986)
T ss_dssp EEEEEEEET--TCEEEEECSTTSSHHHHHHHHHHTC--STTCCCT-T--TSC-EEETTC-----CCCC------------
T ss_pred ecceEEEcC--CCEEEEECCCCCCHHHHHHHHhCCC--cCCCccc-c--cee-EEEEcc-----cccc------------
Confidence 478999999 8899999999999999999999521 1111100 0 000 000000 0000
Q ss_pred ccccccccchhHHHHHHhcCChHHHHHHHHHHHHHccC---ccccccCcccccceecccee---------eeecCCCCCC
Q 018394 88 RQVIAVSKSSDIVLMVLDASKSEGHRQILTKELEAVGL---RLNKRPPQIYFKKKKTGGIS---------FNSTLPLTHV 155 (356)
Q Consensus 88 ~~~~~~~~~~d~i~~v~d~~~~~~~~~~i~~~L~~~~i---~l~~~~~~lS~g~~qr~~ia---------l~~DEp~~~L 155 (356)
....+...+.+.+ .... . .+.+.+.|+.+|+ .+++++.+||+||+||+.|| +++||||++|
T Consensus 507 --~~~~ltv~e~l~~--~~~~-~--~~~v~~~L~~lgL~~~~~~~~~~~LSGGqkQRvaLArAL~~~P~lLLLDEPTs~L 579 (986)
T 2iw3_A 507 --THSDTSVLDFVFE--SGVG-T--KEAIKDKLIEFGFTDEMIAMPISALSGGWKMKLALARAVLRNADILLLDEPTNHL 579 (986)
T ss_dssp --CCTTSBHHHHHHT--TCSS-C--HHHHHHHHHHTTCCHHHHHSBGGGCCHHHHHHHHHHHHHHTTCSEEEEESTTTTC
T ss_pred --cccCCcHHHHHHH--hhcC-H--HHHHHHHHHHcCCChhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEECCccCC
Confidence 0000111222221 1111 1 4567888999998 46889999999999999998 9999999999
Q ss_pred CHHHHHHHHHHhcc-cCcEEEEccCCCHH
Q 018394 156 DEKLCYQILHEYKI-HNAEVLFREDATVD 183 (356)
Q Consensus 156 D~~~~~~il~~l~~-~~~~i~~thd~~~~ 183 (356)
|+.....+++.+.. +.++|++|||....
T Consensus 580 D~~~~~~l~~~L~~~g~tvIivSHdl~~l 608 (986)
T 2iw3_A 580 DTVNVAWLVNYLNTCGITSITISHDSVFL 608 (986)
T ss_dssp CHHHHHHHHHHHHHSCSEEEEECSCHHHH
T ss_pred CHHHHHHHHHHHHhCCCEEEEEECCHHHH
Confidence 99987766665553 45999999997543
No 94
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=99.61 E-value=3.2e-16 Score=140.88 Aligned_cols=60 Identities=30% Similarity=0.564 Sum_probs=49.6
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHcCCCCccccccccccccceEEEECCEeecccCcccccc
Q 018394 19 HGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIE 78 (356)
Q Consensus 19 g~~v~LvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~~D~pGl~~ 78 (356)
...|+|+|++|||||||+|.|++....++++|+||++...+.+.+++..+.++||||...
T Consensus 29 ~~kI~vvG~~~vGKSsLin~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~ 88 (228)
T 2qu8_A 29 KKTIILSGAPNVGKSSFMNIVSRANVDVQSYSFTTKNLYVGHFDHKLNKYQIIDTPGLLD 88 (228)
T ss_dssp SEEEEEECSTTSSHHHHHHHHTTTCEEEECC-----CEEEEEEEETTEEEEEEECTTTTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCCccCCCCCcceeeeeeeeecCCCeEEEEECCCCcC
Confidence 468999999999999999999998766788999999999999999999999999999743
No 95
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=99.60 E-value=2.4e-17 Score=163.78 Aligned_cols=156 Identities=21% Similarity=0.234 Sum_probs=85.5
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcCC-CCccccccccccccceEEEECCEeecccCccccccccccCc-cccccccccccch
Q 018394 20 GRVALIGFPSVGKSTLLTLLTGTH-SEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGK-GRGRQVIAVSKSS 97 (356)
Q Consensus 20 ~~v~LvG~~gaGKSTLln~L~g~~-~~vs~~p~TT~~~~~G~i~~~g~~i~~~D~pGl~~~~~~~~-~~~~~~~~~~~~~ 97 (356)
..|+|+|+||||||||+|+|+|.. ..++++||+|++...+.+.+.+..+.++||||+........ .+..+....++.+
T Consensus 24 ~~V~lvG~~nvGKSTL~n~l~~~~~~~v~~~~g~t~~~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~~~~~~~~~~~~a 103 (456)
T 4dcu_A 24 PVVAIVGRPNVGKSTIFNRIAGERISIVEDTPGVTRDRIYSSAEWLNYDFNLIDTGGIDIGDEPFLAQIRQQAEIAMDEA 103 (456)
T ss_dssp CEEEEECSSSSSHHHHHHHHEEEEEC-----------CEEEECTTCSSCCEEECCCC------CCHHHHHHHHHHHHHHC
T ss_pred CEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCcceeEEEEEEEECCceEEEEECCCCCCcchHHHHHHHHHHHhhHhhC
Confidence 589999999999999999999987 45899999999999999988999999999999752110000 0001111122334
Q ss_pred hHHHHHHhcCChHHHHHHHHHHHHHccCccccccCcccccceeccceeeeecCCCCCCCHHHHHHHHHHhcccCcEEEEc
Q 018394 98 DIVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNAEVLFR 177 (356)
Q Consensus 98 d~i~~v~d~~~~~~~~~~i~~~L~~~~i~l~~~~~~lS~g~~qr~~ial~~DEp~~~LD~~~~~~il~~l~~~~~~i~~t 177 (356)
|++++|+|+... +.... .++.
T Consensus 104 d~il~VvD~~~~---------------------------------------------~~~~d-~~l~------------- 124 (456)
T 4dcu_A 104 DVIIFMVNGREG---------------------------------------------VTAAD-EEVA------------- 124 (456)
T ss_dssp SEEEEEEESSSC---------------------------------------------SCHHH-HHHH-------------
T ss_pred CEEEEEEeCCCC---------------------------------------------CChHH-HHHH-------------
Confidence 444444443221 11111 0111
Q ss_pred cCCCHHHHHHHHhccccccceEEEeecCCCCChhh-HHHHh--cCCCEEEeccccccchHHHHHHHHHHhC
Q 018394 178 EDATVDDLIDVIEGNRKYMKCVYVYNKIDVIGIDD-VDKLA--RQPNSVVISCNLKLNLDRLLARMWEEMG 245 (356)
Q Consensus 178 hd~~~~~~~~~i~~~~~~~p~i~v~NK~Dl~~~~~-~~~l~--~~~~~i~iSa~~~~~l~~L~~~i~~~l~ 245 (356)
+.+. ...+|+++|+||+|+..... ..++. .....+++||++|.|+++|.+.+.+.+.
T Consensus 125 ---------~~l~--~~~~pvilV~NK~D~~~~~~~~~e~~~lg~~~~~~iSA~~g~gv~~L~~~i~~~l~ 184 (456)
T 4dcu_A 125 ---------KILY--RTKKPVVLAVNKLDNTEMRANIYDFYSLGFGEPYPISGTHGLGLGDLLDAVAEHFK 184 (456)
T ss_dssp ---------HHHT--TCCSCEEEEEECC---------CCSGGGSSSSEEECCTTTCTTHHHHHHHHHTTGG
T ss_pred ---------HHHH--HcCCCEEEEEECccchhhhhhHHHHHHcCCCceEEeecccccchHHHHHHHHhhcc
Confidence 1111 12469999999999874321 11111 2345789999999999999999987664
No 96
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=99.60 E-value=3.9e-16 Score=142.74 Aligned_cols=60 Identities=22% Similarity=0.373 Sum_probs=49.0
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHcCCCCccccc--cccccccceEEEECCEeecccCcccccc
Q 018394 19 HGRVALIGFPSVGKSTLLTLLTGTHSEAASYE--FTTLTCIPGIIHYNDTKIQLLDLPGIIE 78 (356)
Q Consensus 19 g~~v~LvG~~gaGKSTLln~L~g~~~~vs~~p--~TT~~~~~G~i~~~g~~i~~~D~pGl~~ 78 (356)
...|+|+|+||||||||+|+|+|....++.++ +||+++..+.+.+++..+.++||||+..
T Consensus 21 ~l~I~lvG~~g~GKSSlin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~~~i~liDTPG~~~ 82 (247)
T 3lxw_A 21 TRRLILVGRTGAGKSATGNSILGQRRFFSRLGATSVTRACTTGSRRWDKCHVEVVDTPDIFS 82 (247)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHTSCCC---------CCSCEEEEEEETTEEEEEEECCSCSS
T ss_pred ceEEEEECCCCCcHHHHHHHHhCCCCccccCCCCCccccEEEEEEEECCcEEEEEECCCCCC
Confidence 46899999999999999999999987655554 4999999999999999999999999854
No 97
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=99.60 E-value=4.1e-16 Score=135.31 Aligned_cols=56 Identities=30% Similarity=0.345 Sum_probs=45.6
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHcCC-CCccccccccccccceEEEECCEeecccCccccc
Q 018394 19 HGRVALIGFPSVGKSTLLTLLTGTH-SEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGII 77 (356)
Q Consensus 19 g~~v~LvG~~gaGKSTLln~L~g~~-~~vs~~p~TT~~~~~G~i~~~g~~i~~~D~pGl~ 77 (356)
...|+|+|++|||||||+|.|++.. ..+++.+++|++..... .+..+.++||||+.
T Consensus 23 ~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~t~~~~~~~---~~~~~~i~Dt~G~~ 79 (195)
T 3pqc_A 23 KGEVAFVGRSNVGKSSLLNALFNRKIAFVSKTPGKTRSINFYL---VNSKYYFVDLPGYG 79 (195)
T ss_dssp TCEEEEEEBTTSSHHHHHHHHHTSCCSCCCSSCCCCCCEEEEE---ETTTEEEEECCCBS
T ss_pred CeEEEEECCCCCCHHHHHHHHHcCccccccCCCCCccCeEEEE---ECCcEEEEECCCCc
Confidence 4689999999999999999999987 56788899998866432 24567889999963
No 98
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=99.60 E-value=2.6e-15 Score=131.07 Aligned_cols=157 Identities=18% Similarity=0.202 Sum_probs=99.1
Q ss_pred CCCeEEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCccccccccccccceEEEECCEeecccCccccccccccCccccc
Q 018394 9 GEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGR 88 (356)
Q Consensus 9 ~~s~~v~~~~g~~v~LvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~~D~pGl~~~~~~~~~~~~ 88 (356)
++++.... ..|+++|++|||||||+|.+++.... .+ ..|..+..+.+.+++..+.++||||......
T Consensus 16 ~~~~~~~~---~ki~~vG~~~vGKSsli~~l~~~~~~--~~-~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~------- 82 (190)
T 1m2o_B 16 SLGLWNKH---GKLLFLGLDNAGKTTLLHMLKNDRLA--TL-QPTWHPTSEELAIGNIKFTTFDLGGHIQARR------- 82 (190)
T ss_dssp -----------CEEEEEESTTSSHHHHHHHHHHSCCC--CC-CCCCSCEEEEEEETTEEEEEEECCCSGGGTT-------
T ss_pred HhhccCCc---cEEEEECCCCCCHHHHHHHHhcCCCC--cc-ccCCCCCeEEEEECCEEEEEEECCCCHHHHH-------
Confidence 44555444 58999999999999999999986532 22 3566777889999999999999999643211
Q ss_pred cccccccchhHHHHHHhcCChHHHHHHHHHHHHHccCccccccCcccccceeccceeeeecCCCCCCCHHHHHHHHHHhc
Q 018394 89 QVIAVSKSSDIVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYK 168 (356)
Q Consensus 89 ~~~~~~~~~d~i~~v~d~~~~~~~~~~i~~~L~~~~i~l~~~~~~lS~g~~qr~~ial~~DEp~~~LD~~~~~~il~~l~ 168 (356)
.....++.+|++++++|...+..- +.+..++.. +++.
T Consensus 83 ~~~~~~~~~d~~i~v~d~~~~~s~-~~~~~~~~~----------------------------------------~~~~-- 119 (190)
T 1m2o_B 83 LWKDYFPEVNGIVFLVDAADPERF-DEARVELDA----------------------------------------LFNI-- 119 (190)
T ss_dssp SGGGGCTTCCEEEEEEETTCGGGH-HHHHHHHHH----------------------------------------HHTC--
T ss_pred HHHHHHhcCCEEEEEEECCChHHH-HHHHHHHHH----------------------------------------HHcc--
Confidence 112235678888888888765321 111111111 0000
Q ss_pred ccCcEEEEccCCCHHHHHHHHhccccccceEEEeecCCCCC---hhhHHHHhcC--------------CCEEEecccccc
Q 018394 169 IHNAEVLFREDATVDDLIDVIEGNRKYMKCVYVYNKIDVIG---IDDVDKLARQ--------------PNSVVISCNLKL 231 (356)
Q Consensus 169 ~~~~~i~~thd~~~~~~~~~i~~~~~~~p~i~v~NK~Dl~~---~~~~~~l~~~--------------~~~i~iSa~~~~ 231 (356)
......|+++|+||+|+.. .+++.+.... .+++++||++|.
T Consensus 120 ----------------------~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~ 177 (190)
T 1m2o_B 120 ----------------------AELKDVPFVILGNKIDAPNAVSEAELRSALGLLNTTGSQRIEGQRPVEVFMCSVVMRN 177 (190)
T ss_dssp ----------------------GGGTTCCEEEEEECTTSTTCCCHHHHHHHTTCSSCCC---CCSSCCEEEEECBTTTTB
T ss_pred ----------------------hhhcCCCEEEEEECCCCcCCCCHHHHHHHhCCccccccccccccceEEEEEeECCcCC
Confidence 0012369999999999974 2333333221 137889999999
Q ss_pred chHHHHHHHHHH
Q 018394 232 NLDRLLARMWEE 243 (356)
Q Consensus 232 ~l~~L~~~i~~~ 243 (356)
|++++.+.+.+.
T Consensus 178 gi~~l~~~l~~~ 189 (190)
T 1m2o_B 178 GYLEAFQWLSQY 189 (190)
T ss_dssp SHHHHHHHHHTT
T ss_pred CHHHHHHHHHhh
Confidence 999999988653
No 99
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=99.59 E-value=2.3e-15 Score=131.01 Aligned_cols=153 Identities=18% Similarity=0.167 Sum_probs=104.9
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcCCCCccccccccccccceEEEECCE--eecccCccccccccccCccccccccccccch
Q 018394 20 GRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDT--KIQLLDLPGIIEGASEGKGRGRQVIAVSKSS 97 (356)
Q Consensus 20 ~~v~LvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~--~i~~~D~pGl~~~~~~~~~~~~~~~~~~~~~ 97 (356)
..|+|+|++|||||||+|.|++........|.+|.+.....+.+++. .+.++|+||..... ......++.+
T Consensus 17 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~-------~~~~~~~~~~ 89 (196)
T 3tkl_A 17 FKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFR-------TITSSYYRGA 89 (196)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSCCCSCCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGC-------TTHHHHHTTC
T ss_pred eEEEEECcCCCCHHHHHHHHHcCCCCCCCCCcccceEEEEEEEECCEEEEEEEEECCCcHhhh-------hhHHHHHhhC
Confidence 58999999999999999999998777677888899988889999884 57889999953211 1112234667
Q ss_pred hHHHHHHhcCChHHHHHHHHHHHHHccCccccccCcccccceeccceeeeecCCCCCCCHHHHHHHHHHhcccCcEEEEc
Q 018394 98 DIVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNAEVLFR 177 (356)
Q Consensus 98 d~i~~v~d~~~~~~~~~~i~~~L~~~~i~l~~~~~~lS~g~~qr~~ial~~DEp~~~LD~~~~~~il~~l~~~~~~i~~t 177 (356)
|++++|+|....... +.+..++ ..+.
T Consensus 90 d~~i~v~d~~~~~s~-~~~~~~~--------------------------------------------~~i~--------- 115 (196)
T 3tkl_A 90 HGIIVVYDVTDQESF-NNVKQWL--------------------------------------------QEID--------- 115 (196)
T ss_dssp SEEEEEEETTCHHHH-HTHHHHH--------------------------------------------HHHH---------
T ss_pred CEEEEEEECcCHHHH-HHHHHHH--------------------------------------------HHHH---------
Confidence 888888887664321 1111111 1110
Q ss_pred cCCCHHHHHHHHhccccccceEEEeecCCCCChh-----hHHHHhc--CCCEEEeccccccchHHHHHHHHHHhC
Q 018394 178 EDATVDDLIDVIEGNRKYMKCVYVYNKIDVIGID-----DVDKLAR--QPNSVVISCNLKLNLDRLLARMWEEMG 245 (356)
Q Consensus 178 hd~~~~~~~~~i~~~~~~~p~i~v~NK~Dl~~~~-----~~~~l~~--~~~~i~iSa~~~~~l~~L~~~i~~~l~ 245 (356)
.. .....|+++|+||+|+.... +...+.. ..+++++||+++.|++++.+.+.+.+.
T Consensus 116 ----------~~--~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~i~ 178 (196)
T 3tkl_A 116 ----------RY--ASENVNKLLVGNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEIK 178 (196)
T ss_dssp ----------HH--SCTTCEEEEEEECTTCTTTCCSCHHHHHHHHHHTTCCEEEECTTTCTTHHHHHHHHHHHHH
T ss_pred ----------Hh--cCCCCCEEEEEECcccccccccCHHHHHHHHHHcCCcEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 00 01135999999999997442 2233322 246899999999999999888877653
No 100
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=99.59 E-value=3.3e-16 Score=136.40 Aligned_cols=56 Identities=29% Similarity=0.330 Sum_probs=37.2
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHcCC--CCccccccccccccceEEEECCEeecccCccccc
Q 018394 19 HGRVALIGFPSVGKSTLLTLLTGTH--SEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGII 77 (356)
Q Consensus 19 g~~v~LvG~~gaGKSTLln~L~g~~--~~vs~~p~TT~~~~~G~i~~~g~~i~~~D~pGl~ 77 (356)
...|+|+|++|||||||+|.|++.. ..+++.|++|++..... ++ ..+.++||||+.
T Consensus 23 ~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~--~~-~~~~l~Dt~G~~ 80 (195)
T 1svi_A 23 LPEIALAGRSNVGKSSFINSLINRKNLARTSSKPGKTQTLNFYI--IN-DELHFVDVPGYG 80 (195)
T ss_dssp CCEEEEEEBTTSSHHHHHHHHHTC-------------CCEEEEE--ET-TTEEEEECCCBC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCCccccCCCCCceeeEEEEE--EC-CcEEEEECCCCC
Confidence 4689999999999999999999875 45788899998876433 33 368899999964
No 101
>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana}
Probab=99.58 E-value=8.8e-17 Score=157.89 Aligned_cols=155 Identities=21% Similarity=0.273 Sum_probs=98.2
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHcCCC-CccccccccccccceEEEECCE-eecccCccccccccccCccccccccccccc
Q 018394 19 HGRVALIGFPSVGKSTLLTLLTGTHS-EAASYEFTTLTCIPGIIHYNDT-KIQLLDLPGIIEGASEGKGRGRQVIAVSKS 96 (356)
Q Consensus 19 g~~v~LvG~~gaGKSTLln~L~g~~~-~vs~~p~TT~~~~~G~i~~~g~-~i~~~D~pGl~~~~~~~~~~~~~~~~~~~~ 96 (356)
...|+|+|.+|+|||||+|+|++... .++++|+||+++....+.+.+. ++.++||||.......+..........++.
T Consensus 34 ~~kI~IvG~~~vGKSTLin~L~~~~~~~~~~~~gtT~d~~~~~~~~~~~~~l~liDTpG~~d~~~l~~~~~~~~~~~l~~ 113 (423)
T 3qq5_A 34 RRYIVVAGRRNVGKSSFMNALVGQNVSIVSDYAGTTTDPVYKSMELHPIGPVTLVDTPGLDDVGELGRLRVEKARRVFYR 113 (423)
T ss_dssp CEEEEEECSCSTTTTTTTTSSCC-------------CCCCEEEEEETTTEEEEEEECSSTTCCCTTCCCCHHHHHHHHTS
T ss_pred CEEEEEECCCCCCHHHHHHHHHcCCCCccCCCCCeeeeeEEEEEEECCCCeEEEEECcCCCcccchhHHHHHHHHHHHhc
Confidence 46899999999999999999999874 6889999999999999999876 899999999864322221122223334556
Q ss_pred hhHHHHHHhcCChHHHHHHHHHHHHHccCccccccCcccccceeccceeeeecCCCCCCCHHHHHHHHHHhcccCcEEEE
Q 018394 97 SDIVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNAEVLF 176 (356)
Q Consensus 97 ~d~i~~v~d~~~~~~~~~~i~~~L~~~~i~l~~~~~~lS~g~~qr~~ial~~DEp~~~LD~~~~~~il~~l~~~~~~i~~ 176 (356)
+|++++|+|+... ... ..++..+.
T Consensus 114 aD~vllVvD~~~~-~~~-----------------------------------------------~~~l~~l~-------- 137 (423)
T 3qq5_A 114 ADCGILVTDSAPT-PYE-----------------------------------------------DDVVNLFK-------- 137 (423)
T ss_dssp CSEEEEECSSSCC-HHH-----------------------------------------------HHHHHHHH--------
T ss_pred CCEEEEEEeCCCh-HHH-----------------------------------------------HHHHHHHH--------
Confidence 6776666666221 111 11111111
Q ss_pred ccCCCHHHHHHHHhccccccceEEEeecCCCCChhh---HHHHhc--CCCEEEeccccccchHHHHHHHHHHhC
Q 018394 177 REDATVDDLIDVIEGNRKYMKCVYVYNKIDVIGIDD---VDKLAR--QPNSVVISCNLKLNLDRLLARMWEEMG 245 (356)
Q Consensus 177 thd~~~~~~~~~i~~~~~~~p~i~v~NK~Dl~~~~~---~~~l~~--~~~~i~iSa~~~~~l~~L~~~i~~~l~ 245 (356)
....|+++|+||+|+..... .+.+.+ ..+++++||++|.|+++|.+.|.+.+.
T Consensus 138 ----------------~~~~piIvV~NK~Dl~~~~~~~~~~~l~~~~g~~v~~vSAktg~gI~eL~~~L~~~l~ 195 (423)
T 3qq5_A 138 ----------------EMEIPFVVVVNKIDVLGEKAEELKGLYESRYEAKVLLVSALQKKGFDDIGKTISEILP 195 (423)
T ss_dssp ----------------HTTCCEEEECCCCTTTTCCCTHHHHHSSCCTTCCCCCCSSCCTTSTTTHHHHHHHHSC
T ss_pred ----------------hcCCCEEEEEeCcCCCCccHHHHHHHHHHHcCCCEEEEECCCCCCHHHHHHHHHHhhh
Confidence 01359999999999985433 233322 135789999999999999999999884
No 102
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=99.58 E-value=7.7e-15 Score=155.72 Aligned_cols=80 Identities=10% Similarity=0.082 Sum_probs=62.6
Q ss_pred HHHHHHHHHHccC---ccccccCcccccceecccee------------eeecCCCCCCCHHHHHHHHHHhc----ccCcE
Q 018394 113 RQILTKELEAVGL---RLNKRPPQIYFKKKKTGGIS------------FNSTLPLTHVDEKLCYQILHEYK----IHNAE 173 (356)
Q Consensus 113 ~~~i~~~L~~~~i---~l~~~~~~lS~g~~qr~~ia------------l~~DEp~~~LD~~~~~~il~~l~----~~~~~ 173 (356)
.....+.|+.+|+ .+.+++.+||+||+||+.|| +++||||++||+.....+++.+. .+.|+
T Consensus 782 ~~~~~~~L~~vGL~~~~lgq~~~~LSGGErQRV~LAraL~~~p~~p~LLILDEPTsGLD~~~~~~L~~lL~~L~~~G~TV 861 (916)
T 3pih_A 782 IKRTLQVLHDVGLGYVKLGQPATTLSGGEAQRIKLASELRKRDTGRTLYILDEPTVGLHFEDVRKLVEVLHRLVDRGNTV 861 (916)
T ss_dssp HHHHHHHHHHTTGGGSBTTCCSTTCCHHHHHHHHHHHHHTSCCCSSEEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEE
T ss_pred HHHHHHHHHHcCCchhhccCCccCCCHHHHHHHHHHHHHhhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEE
Confidence 3456788999998 46789999999999999887 88999999999998666555443 35699
Q ss_pred EEEccCCCHHHHHHHHhccccccceEEEe
Q 018394 174 VLFREDATVDDLIDVIEGNRKYMKCVYVY 202 (356)
Q Consensus 174 i~~thd~~~~~~~~~i~~~~~~~p~i~v~ 202 (356)
|+++||++... ..+.|+++
T Consensus 862 IvI~HdL~~i~----------~ADrIivL 880 (916)
T 3pih_A 862 IVIEHNLDVIK----------NADHIIDL 880 (916)
T ss_dssp EEECCCHHHHT----------TCSEEEEE
T ss_pred EEEeCCHHHHH----------hCCEEEEe
Confidence 99999974321 24677777
No 103
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=99.56 E-value=4.7e-15 Score=128.15 Aligned_cols=152 Identities=18% Similarity=0.163 Sum_probs=99.7
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHcCCCCccccccccccccceEEEECCEeecccCccccccccccCccccccccccccchh
Q 018394 19 HGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQVIAVSKSSD 98 (356)
Q Consensus 19 g~~v~LvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~~D~pGl~~~~~~~~~~~~~~~~~~~~~d 98 (356)
...|+++|++|||||||+|.+++.. . ..+ ..|.......+.+++..+.++||||..... ......++.+|
T Consensus 18 ~~~i~v~G~~~~GKssl~~~l~~~~-~-~~~-~~t~~~~~~~~~~~~~~~~~~Dt~G~~~~~-------~~~~~~~~~~d 87 (186)
T 1ksh_A 18 ELRLLMLGLDNAGKTTILKKFNGED-V-DTI-SPTLGFNIKTLEHRGFKLNIWDVGGQKSLR-------SYWRNYFESTD 87 (186)
T ss_dssp CEEEEEECSTTSSHHHHHHHHTTCC-C-SSC-CCCSSEEEEEEEETTEEEEEEEECCSHHHH-------TTGGGGCTTCS
T ss_pred eeEEEEECCCCCCHHHHHHHHhcCC-C-Ccc-cccCccceEEEEECCEEEEEEECCCCHhHH-------HHHHHHhcCCC
Confidence 5799999999999999999999876 2 222 224455667788899999999999964321 11123356788
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHHccCccccccCcccccceeccceeeeecCCCCCCCHHHHHHHHHHhcccCcEEEEcc
Q 018394 99 IVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNAEVLFRE 178 (356)
Q Consensus 99 ~i~~v~d~~~~~~~~~~i~~~L~~~~i~l~~~~~~lS~g~~qr~~ial~~DEp~~~LD~~~~~~il~~l~~~~~~i~~th 178 (356)
++++|+|...+..- +.+..++.. +++.
T Consensus 88 ~ii~v~d~~~~~s~-~~~~~~~~~----------------------------------------~~~~------------ 114 (186)
T 1ksh_A 88 GLIWVVDSADRQRM-QDCQRELQS----------------------------------------LLVE------------ 114 (186)
T ss_dssp EEEEEEETTCGGGH-HHHHHHHHH----------------------------------------HHTC------------
T ss_pred EEEEEEECcCHHHH-HHHHHHHHH----------------------------------------HHhC------------
Confidence 88888887764321 111111111 0000
Q ss_pred CCCHHHHHHHHhccccccceEEEeecCCCCChhhHHHH---hc-------CCCEEEeccccccchHHHHHHHHHHhC
Q 018394 179 DATVDDLIDVIEGNRKYMKCVYVYNKIDVIGIDDVDKL---AR-------QPNSVVISCNLKLNLDRLLARMWEEMG 245 (356)
Q Consensus 179 d~~~~~~~~~i~~~~~~~p~i~v~NK~Dl~~~~~~~~l---~~-------~~~~i~iSa~~~~~l~~L~~~i~~~l~ 245 (356)
......|+++|+||+|+......+.+ .. ..+++++||+++.|++++.+.+.+.+.
T Consensus 115 ------------~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~ 179 (186)
T 1ksh_A 115 ------------ERLAGATLLIFANKQDLPGALSCNAIQEALELDSIRSHHWRIQGCSAVTGEDLLPGIDWLLDDIS 179 (186)
T ss_dssp ------------GGGTTCEEEEEEECTTSTTCCCHHHHHHHTTGGGCCSSCEEEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred ------------hhcCCCcEEEEEeCccCCCCCCHHHHHHHhChhhccCCceEEEEeeCCCCCCHHHHHHHHHHHHH
Confidence 00123699999999999754322222 11 114789999999999999999987764
No 104
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=99.56 E-value=5.2e-15 Score=130.10 Aligned_cols=80 Identities=19% Similarity=0.301 Sum_probs=55.8
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcCCCCccccccccccccceEEEECCEeecccCccccccccccCccccccccccccchhH
Q 018394 20 GRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQVIAVSKSSDI 99 (356)
Q Consensus 20 ~~v~LvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~~D~pGl~~~~~~~~~~~~~~~~~~~~~d~ 99 (356)
..|+|+|++|||||||+|.+++.... .+ ..|..+..+.+.+++..+.++||||...... .....++.+|.
T Consensus 26 ~ki~lvG~~~vGKSsLi~~l~~~~~~--~~-~~t~~~~~~~~~~~~~~l~i~Dt~G~~~~~~-------~~~~~~~~~d~ 95 (198)
T 1f6b_A 26 GKLVFLGLDNAGKTTLLHMLKDDRLG--QH-VPTLHPTSEELTIAGMTFTTFDLGGHIQARR-------VWKNYLPAING 95 (198)
T ss_dssp EEEEEEEETTSSHHHHHHHHSCC---------CCCCCSCEEEEETTEEEEEEEECC----CC-------GGGGGGGGCSE
T ss_pred cEEEEECCCCCCHHHHHHHHhcCCCC--cc-CCCCCceeEEEEECCEEEEEEECCCcHhhHH-------HHHHHHhcCCE
Confidence 58999999999999999999986532 22 2466667889999999999999999532111 11123567888
Q ss_pred HHHHHhcCCh
Q 018394 100 VLMVLDASKS 109 (356)
Q Consensus 100 i~~v~d~~~~ 109 (356)
+++++|...+
T Consensus 96 ~i~v~D~~~~ 105 (198)
T 1f6b_A 96 IVFLVDCADH 105 (198)
T ss_dssp EEEEEETTCG
T ss_pred EEEEEECCCH
Confidence 8888887764
No 105
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=99.56 E-value=1.8e-15 Score=131.52 Aligned_cols=156 Identities=14% Similarity=0.180 Sum_probs=101.9
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHcCCCCccccccccccccceEEEECCEeecccCccccccccccCccccccccccccchh
Q 018394 19 HGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQVIAVSKSSD 98 (356)
Q Consensus 19 g~~v~LvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~~D~pGl~~~~~~~~~~~~~~~~~~~~~d 98 (356)
...|+|+|.+|||||||+|.|++....... ..+|.+.....+.+++..+.++||||..... ......++.+|
T Consensus 21 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~~-~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~-------~~~~~~~~~~d 92 (190)
T 2h57_A 21 EVHVLCLGLDNSGKTTIINKLKPSNAQSQN-ILPTIGFSIEKFKSSSLSFTVFDMSGQGRYR-------NLWEHYYKEGQ 92 (190)
T ss_dssp CEEEEEEECTTSSHHHHHHHTSCGGGCCSS-CCCCSSEEEEEEECSSCEEEEEEECCSTTTG-------GGGGGGGGGCS
T ss_pred ccEEEEECCCCCCHHHHHHHHhcCCCCCCC-cCCccceeEEEEEECCEEEEEEECCCCHHHH-------HHHHHHHhcCC
Confidence 468999999999999999999987632233 3456677778888899999999999953211 11123356788
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHHccCccccccCcccccceeccceeeeecCCCCCCCHHHHHHHHHHhcccCcEEEEcc
Q 018394 99 IVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNAEVLFRE 178 (356)
Q Consensus 99 ~i~~v~d~~~~~~~~~~i~~~L~~~~i~l~~~~~~lS~g~~qr~~ial~~DEp~~~LD~~~~~~il~~l~~~~~~i~~th 178 (356)
++++|+|....... +.+..++.. ++...
T Consensus 93 ~ii~v~d~~~~~s~-~~~~~~~~~----------------------------------------~~~~~----------- 120 (190)
T 2h57_A 93 AIIFVIDSSDRLRM-VVAKEELDT----------------------------------------LLNHP----------- 120 (190)
T ss_dssp EEEEEEETTCHHHH-HHHHHHHHH----------------------------------------HHHST-----------
T ss_pred EEEEEEECCCHHHH-HHHHHHHHH----------------------------------------HHhCh-----------
Confidence 88888887764321 111111111 00000
Q ss_pred CCCHHHHHHHHhccccccceEEEeecCCCCCh---hhHHHHhc-------CCCEEEeccccccchHHHHHHHHHHhC
Q 018394 179 DATVDDLIDVIEGNRKYMKCVYVYNKIDVIGI---DDVDKLAR-------QPNSVVISCNLKLNLDRLLARMWEEMG 245 (356)
Q Consensus 179 d~~~~~~~~~i~~~~~~~p~i~v~NK~Dl~~~---~~~~~l~~-------~~~~i~iSa~~~~~l~~L~~~i~~~l~ 245 (356)
.......|+++|+||+|+... +++..... ...++++||+++.|+++|.+.|.+.+.
T Consensus 121 -----------~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~ 186 (190)
T 2h57_A 121 -----------DIKHRRIPILFFANKMDLRDAVTSVKVSQLLCLENIKDKPWHICASDAIKGEGLQEGVDWLQDQIQ 186 (190)
T ss_dssp -----------TTTTSCCCEEEEEECTTSTTCCCHHHHHHHHTGGGCCSSCEEEEECBTTTTBTHHHHHHHHHHHC-
T ss_pred -----------hhccCCCeEEEEEeCcCcccCCCHHHHHHHhChhhccCCceEEEEccCCCCcCHHHHHHHHHHHHH
Confidence 000024699999999999753 23333221 124789999999999999999988764
No 106
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=99.56 E-value=3.4e-15 Score=149.61 Aligned_cols=152 Identities=14% Similarity=0.122 Sum_probs=104.8
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcCCCCccccccccccccceEEEECCEeecccCccccccccccCccccccccccccchhH
Q 018394 20 GRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQVIAVSKSSDI 99 (356)
Q Consensus 20 ~~v~LvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~~D~pGl~~~~~~~~~~~~~~~~~~~~~d~ 99 (356)
..|+|+|.||||||||||.|++.. .+. .++|++...+.+.+.+..+.++||||..... ......++.+|+
T Consensus 323 ~ki~lvG~~nvGKSsLl~~l~~~~-~~~--~~~T~~~~~~~~~~~~~~~~l~Dt~G~~~~~-------~~~~~~~~~ad~ 392 (497)
T 3lvq_E 323 MRILMLGLDAAGKTTILYKLKLGQ-SVT--TIPTVGFNVETVTYKNVKFNVWDVGGQDKIR-------PLWRHYYTGTQG 392 (497)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSS-CCC--CCCCSSEEEEEEESSSCEEEEEEECCCGGGS-------GGGGGGGTTCCE
T ss_pred eeEEEEcCCCCCHHHHHHHHhcCC-CCC--cCCccceeEEEEEeCCEEEEEEECCCcHHHH-------HHHHHHhccCCE
Confidence 589999999999999999999876 333 3458999999999999999999999954321 112334678999
Q ss_pred HHHHHhcCChHHHHHHHHHHHHHccCccccccCcccccceeccceeeeecCCCCCCCHHHHHHHHHHhcccCcEEEEccC
Q 018394 100 VLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNAEVLFRED 179 (356)
Q Consensus 100 i~~v~d~~~~~~~~~~i~~~L~~~~i~l~~~~~~lS~g~~qr~~ial~~DEp~~~LD~~~~~~il~~l~~~~~~i~~thd 179 (356)
+++|+|....... +.+..++.. +++.
T Consensus 393 ~i~V~D~~~~~s~-~~~~~~~~~----------------------------------------~~~~------------- 418 (497)
T 3lvq_E 393 LIFVVDCADRDRI-DEARQELHR----------------------------------------IIND------------- 418 (497)
T ss_dssp EEEEEETTCGGGH-HHHHHHHHH----------------------------------------HHTS-------------
T ss_pred EEEEEECcchhHH-HHHHHHHHH----------------------------------------Hhhh-------------
Confidence 9999998765321 111111111 0000
Q ss_pred CCHHHHHHHHhccccccceEEEeecCCCCChh---hHHHHhcC-------CCEEEeccccccchHHHHHHHHHHhCc
Q 018394 180 ATVDDLIDVIEGNRKYMKCVYVYNKIDVIGID---DVDKLARQ-------PNSVVISCNLKLNLDRLLARMWEEMGL 246 (356)
Q Consensus 180 ~~~~~~~~~i~~~~~~~p~i~v~NK~Dl~~~~---~~~~l~~~-------~~~i~iSa~~~~~l~~L~~~i~~~l~~ 246 (356)
.....+|+|+|+||+|+.... ++...... ..++++||++|.|+++|.+.|.+.+..
T Consensus 419 -----------~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~~~l~~~~~~ 484 (497)
T 3lvq_E 419 -----------REMRDAIILIFANKQDLPDAMKPHEIQEKLGLTRIRDRNWYVQPSCATSGDGLYEGLTWLTSNYKS 484 (497)
T ss_dssp -----------GGGTTCEEEEEEECCSSSSCCCHHHHHHHTTCTTCCSSCEEEEECBTTTTBTHHHHHHHHHHHCC-
T ss_pred -----------hhcCCCcEEEEEECCCCCcCCCHHHHHHHhchhhhhcCCeEEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 001246999999999997542 23222111 137899999999999999999988753
No 107
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.55 E-value=9e-15 Score=129.01 Aligned_cols=153 Identities=18% Similarity=0.143 Sum_probs=103.2
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHcCCCCccccccccccccceEEEECC--EeecccCccccccccccCccccccccccccc
Q 018394 19 HGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYND--TKIQLLDLPGIIEGASEGKGRGRQVIAVSKS 96 (356)
Q Consensus 19 g~~v~LvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g--~~i~~~D~pGl~~~~~~~~~~~~~~~~~~~~ 96 (356)
...|+|+|++|||||||+|.|++........|.+|.+.....+.++| ..+.++||||..... ......++.
T Consensus 20 ~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~-------~~~~~~~~~ 92 (213)
T 3cph_A 20 IMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQERFR-------TITTAYYRG 92 (213)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHCCCCCSSSCCCSCCEEEEEEEETTEEEEEEEECCTTGGGGT-------CCCHHHHTT
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCCCCcccCCcccceEEEEEEEECCEEEEEEEEeCCCcHHHH-------HHHHHHhcc
Confidence 46899999999999999999998876666678888888888888888 568899999964321 111223466
Q ss_pred hhHHHHHHhcCChHHHHHHHHHHHHHccCccccccCcccccceeccceeeeecCCCCCCCHHHHHHHHHHhcccCcEEEE
Q 018394 97 SDIVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNAEVLF 176 (356)
Q Consensus 97 ~d~i~~v~d~~~~~~~~~~i~~~L~~~~i~l~~~~~~lS~g~~qr~~ial~~DEp~~~LD~~~~~~il~~l~~~~~~i~~ 176 (356)
+|++++|+|...+.. .+.+..++ ..+.
T Consensus 93 ~d~ii~v~d~~~~~s-~~~~~~~~--------------------------------------------~~i~-------- 119 (213)
T 3cph_A 93 AMGIILVYDVTDERT-FTNIKQWF--------------------------------------------KTVN-------- 119 (213)
T ss_dssp CSEEEEEEETTCHHH-HHTHHHHH--------------------------------------------HHHH--------
T ss_pred CCEEEEEEECCCHHH-HHHHHHHH--------------------------------------------HHHH--------
Confidence 788888887765432 11111111 1110
Q ss_pred ccCCCHHHHHHHHhccccccceEEEeecCCCCCh----hhHHHHhc--CCCEEEeccccccchHHHHHHHHHHh
Q 018394 177 REDATVDDLIDVIEGNRKYMKCVYVYNKIDVIGI----DDVDKLAR--QPNSVVISCNLKLNLDRLLARMWEEM 244 (356)
Q Consensus 177 thd~~~~~~~~~i~~~~~~~p~i~v~NK~Dl~~~----~~~~~l~~--~~~~i~iSa~~~~~l~~L~~~i~~~l 244 (356)
. . .....|+++|+||+|+... ++...+.. ..+++++||+++.|++++.+.|.+.+
T Consensus 120 ----------~-~--~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~ 180 (213)
T 3cph_A 120 ----------E-H--ANDEAQLLLVGNKSDMETRVVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTLAKLI 180 (213)
T ss_dssp ----------H-H--TTTCSEEEEEEECTTCSSCCSCHHHHHHHHHHHTCCEEECBTTTTBSSHHHHHHHHHHH
T ss_pred ----------H-h--cCCCCCEEEEEECCCCcccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHH
Confidence 0 0 0113589999999998522 22333322 23689999999999999988887655
No 108
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=99.55 E-value=3.4e-15 Score=128.85 Aligned_cols=149 Identities=17% Similarity=0.169 Sum_probs=96.0
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHcCCCCccccccccccccceEEEECCEeecccCccccccccccCccccccccccccchh
Q 018394 19 HGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQVIAVSKSSD 98 (356)
Q Consensus 19 g~~v~LvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~~D~pGl~~~~~~~~~~~~~~~~~~~~~d 98 (356)
...|+++|.+|||||||+|.|++... .....|.......+.+++..+.++||||..... ......++.+|
T Consensus 21 ~~~i~v~G~~~~GKSsli~~l~~~~~---~~~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~-------~~~~~~~~~~d 90 (181)
T 2h17_A 21 EHKVIIVGLDNAGKTTILYQFSMNEV---VHTSPTIGSNVEEIVINNTRFLMWDIGGQESLR-------SSWNTYYTNTE 90 (181)
T ss_dssp CEEEEEEEETTSSHHHHHHHHHTTSC---EEEECCSSSSCEEEEETTEEEEEEEESSSGGGT-------CGGGGGGTTCC
T ss_pred eeEEEEECCCCCCHHHHHHHHhcCCC---CccCCcCceeeEEEEECCEEEEEEECCCCHhHH-------HHHHHHhccCC
Confidence 46899999999999999999998764 112233344556788899999999999964321 11223456788
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHHccCccccccCcccccceeccceeeeecCCCCCCCHHHHHHHHHHhcccCcEEEEcc
Q 018394 99 IVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNAEVLFRE 178 (356)
Q Consensus 99 ~i~~v~d~~~~~~~~~~i~~~L~~~~i~l~~~~~~lS~g~~qr~~ial~~DEp~~~LD~~~~~~il~~l~~~~~~i~~th 178 (356)
++++|+|......- +.+..++ ..+..
T Consensus 91 ~ii~v~D~~~~~s~-~~~~~~~--------------------------------------------~~~~~--------- 116 (181)
T 2h17_A 91 FVIVVVDSTDRERI-SVTREEL--------------------------------------------YKMLA--------- 116 (181)
T ss_dssp EEEEEEETTCTTTH-HHHHHHH--------------------------------------------HHHHT---------
T ss_pred EEEEEEECCCHHHH-HHHHHHH--------------------------------------------HHHHh---------
Confidence 88888887654221 1111111 11000
Q ss_pred CCCHHHHHHHHhccccccceEEEeecCCCCCh---hhHHHHhc-----C--CCEEEeccccccchHHHHHHHHH
Q 018394 179 DATVDDLIDVIEGNRKYMKCVYVYNKIDVIGI---DDVDKLAR-----Q--PNSVVISCNLKLNLDRLLARMWE 242 (356)
Q Consensus 179 d~~~~~~~~~i~~~~~~~p~i~v~NK~Dl~~~---~~~~~l~~-----~--~~~i~iSa~~~~~l~~L~~~i~~ 242 (356)
.......|+++|+||+|+... +++..... . ..++++||+++.|++++.+.|.+
T Consensus 117 -----------~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~ 179 (181)
T 2h17_A 117 -----------HEDLRKAGLLIFANKQDVKECMTVAEISQFLKLTSIKDHQWHIQACCALTGEGLCQGLEWMMS 179 (181)
T ss_dssp -----------CGGGTTCEEEEEEECTTSTTCCCHHHHHHHTTGGGCCSSCEEEEECBTTTTBTHHHHHHHHHT
T ss_pred -----------ChhhCCCeEEEEEECCCcccCCCHHHHHHHhCcccccCCceEEEEccCCCCcCHHHHHHHHHh
Confidence 000124699999999999753 33332211 1 14789999999999999988865
No 109
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=99.55 E-value=6.7e-15 Score=124.35 Aligned_cols=151 Identities=17% Similarity=0.197 Sum_probs=97.7
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcCCCCccccccccccccceEEEECCE--eecccCccccccccccCccccccccccccch
Q 018394 20 GRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDT--KIQLLDLPGIIEGASEGKGRGRQVIAVSKSS 97 (356)
Q Consensus 20 ~~v~LvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~--~i~~~D~pGl~~~~~~~~~~~~~~~~~~~~~ 97 (356)
..|+++|++|||||||+|.|++........|.++.+.....+.+++. .+.++|+||..... . .....++.+
T Consensus 6 ~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~----~---~~~~~~~~~ 78 (168)
T 1z2a_A 6 IKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQEEFD----A---ITKAYYRGA 78 (168)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHCCCCCCSSCCCSSSEEEEEEEETTEEEEEEEECCTTGGGTT----C---CCHHHHTTC
T ss_pred EEEEEECcCCCCHHHHHHHHHcCCCCCCCCCceEEEEEEEEEEECCEEEEEEEEcCCCcHhHH----H---HHHHHhcCC
Confidence 57999999999999999999987654344455556666777777775 67888999953211 1 112234567
Q ss_pred hHHHHHHhcCChHHHHHHHHHHHHHccCccccccCcccccceeccceeeeecCCCCCCCHHHHHHHHHHhcccCcEEEEc
Q 018394 98 DIVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNAEVLFR 177 (356)
Q Consensus 98 d~i~~v~d~~~~~~~~~~i~~~L~~~~i~l~~~~~~lS~g~~qr~~ial~~DEp~~~LD~~~~~~il~~l~~~~~~i~~t 177 (356)
|++++++|...+... +.+..+ +..+.
T Consensus 79 d~~i~v~d~~~~~s~-~~~~~~--------------------------------------------~~~i~--------- 104 (168)
T 1z2a_A 79 QACVLVFSTTDRESF-EAISSW--------------------------------------------REKVV--------- 104 (168)
T ss_dssp CEEEEEEETTCHHHH-HTHHHH--------------------------------------------HHHHH---------
T ss_pred CEEEEEEECcCHHHH-HHHHHH--------------------------------------------HHHHH---------
Confidence 777777777654221 111111 11110
Q ss_pred cCCCHHHHHHHHhccccccceEEEeecCCCCCh-----hhHHHHhc--CCCEEEeccccccchHHHHHHHHHHh
Q 018394 178 EDATVDDLIDVIEGNRKYMKCVYVYNKIDVIGI-----DDVDKLAR--QPNSVVISCNLKLNLDRLLARMWEEM 244 (356)
Q Consensus 178 hd~~~~~~~~~i~~~~~~~p~i~v~NK~Dl~~~-----~~~~~l~~--~~~~i~iSa~~~~~l~~L~~~i~~~l 244 (356)
.. ....|+++|+||+|+... ++...+.. ..+++++||+++.|++++.+.+.+.+
T Consensus 105 ---------~~----~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~ 165 (168)
T 1z2a_A 105 ---------AE----VGDIPTALVQNKIDLLDDSCIKNEEAEGLAKRLKLRFYRTSVKEDLNVSEVFKYLAEKH 165 (168)
T ss_dssp ---------HH----HCSCCEEEEEECGGGGGGCSSCHHHHHHHHHHHTCEEEECBTTTTBSSHHHHHHHHHHH
T ss_pred ---------Hh----CCCCCEEEEEECcccCcccccCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHHHHHHH
Confidence 00 013599999999998642 22333322 23588999999999999999887654
No 110
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=99.55 E-value=5.9e-15 Score=124.92 Aligned_cols=152 Identities=17% Similarity=0.132 Sum_probs=95.5
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcCCCCccccccccccccceEEEECCE--eecccCccccccccccCccccccccccccch
Q 018394 20 GRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDT--KIQLLDLPGIIEGASEGKGRGRQVIAVSKSS 97 (356)
Q Consensus 20 ~~v~LvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~--~i~~~D~pGl~~~~~~~~~~~~~~~~~~~~~ 97 (356)
..|+++|++|||||||+|.|++........|.+|.+.....+.+++. .+.++|+||..... ......++.+
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~-------~~~~~~~~~~ 76 (170)
T 1g16_A 4 MKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQERFR-------TITTAYYRGA 76 (170)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHCCCCC-------CCEEEEEEESSSCEEEEEEECCTTGGGTS-------CCCHHHHTTE
T ss_pred eEEEEECcCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCCChhhh-------hhHHHHhccC
Confidence 47999999999999999999988765566677777777777777774 57788999953211 1112234667
Q ss_pred hHHHHHHhcCChHHHHHHHHHHHHHccCccccccCcccccceeccceeeeecCCCCCCCHHHHHHHHHHhcccCcEEEEc
Q 018394 98 DIVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNAEVLFR 177 (356)
Q Consensus 98 d~i~~v~d~~~~~~~~~~i~~~L~~~~i~l~~~~~~lS~g~~qr~~ial~~DEp~~~LD~~~~~~il~~l~~~~~~i~~t 177 (356)
|++++++|...+.. .+.+..++ ..+..
T Consensus 77 d~~i~v~d~~~~~s-~~~~~~~~--------------------------------------------~~i~~-------- 103 (170)
T 1g16_A 77 MGIILVYDITDERT-FTNIKQWF--------------------------------------------KTVNE-------- 103 (170)
T ss_dssp EEEEEEEETTCHHH-HHTHHHHH--------------------------------------------HHHHH--------
T ss_pred CEEEEEEECCCHHH-HHHHHHHH--------------------------------------------HHHHH--------
Confidence 87888887765432 11111111 11100
Q ss_pred cCCCHHHHHHHHhccccccceEEEeecCCCCCh----hhHHHHhc--CCCEEEeccccccchHHHHHHHHHHh
Q 018394 178 EDATVDDLIDVIEGNRKYMKCVYVYNKIDVIGI----DDVDKLAR--QPNSVVISCNLKLNLDRLLARMWEEM 244 (356)
Q Consensus 178 hd~~~~~~~~~i~~~~~~~p~i~v~NK~Dl~~~----~~~~~l~~--~~~~i~iSa~~~~~l~~L~~~i~~~l 244 (356)
. .....|+++|+||+|+... ++...+.+ ..+++++||+++.|++++.+.+.+.+
T Consensus 104 -----------~--~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~~ 163 (170)
T 1g16_A 104 -----------H--ANDEAQLLLVGNKSDMETRVVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTLAKLI 163 (170)
T ss_dssp -----------H--SCTTCEEEEEEECTTCTTCCSCHHHHHHHHHHHTCCEEECBTTTTBSHHHHHHHHHHHH
T ss_pred -----------h--cCCCCcEEEEEECccCCcCccCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 0 0113599999999998432 22333321 23689999999999999999887765
No 111
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=99.55 E-value=1.7e-15 Score=137.34 Aligned_cols=60 Identities=23% Similarity=0.365 Sum_probs=50.3
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHcCCCCccccc--cccccccceEEEECCEeecccCcccccc
Q 018394 19 HGRVALIGFPSVGKSTLLTLLTGTHSEAASYE--FTTLTCIPGIIHYNDTKIQLLDLPGIIE 78 (356)
Q Consensus 19 g~~v~LvG~~gaGKSTLln~L~g~~~~vs~~p--~TT~~~~~G~i~~~g~~i~~~D~pGl~~ 78 (356)
...|+|+|++|||||||+|+|+|.....+.+| ++|+++..+.+.+++..+.++||||+..
T Consensus 29 ~~~i~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~i~liDTpG~~~ 90 (239)
T 3lxx_A 29 QLRIVLVGKTGAGKSATGNSILGRKVFHSGTAAKSITKKCEKRSSSWKETELVVVDTPGIFD 90 (239)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHTSCCSCC-------CCSCEEEEEEETTEEEEEEECCSCC-
T ss_pred ceEEEEECCCCCCHHHHHHHHcCCCcCccCCCCCceeeeEEEEEEEeCCceEEEEECCCccC
Confidence 46899999999999999999999988777877 8999999999999999999999999864
No 112
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=99.55 E-value=1.4e-14 Score=127.48 Aligned_cols=152 Identities=18% Similarity=0.134 Sum_probs=103.3
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcCCCCccccccccccccceEEEECCE--eecccCccccccccccCccccccccccccch
Q 018394 20 GRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDT--KIQLLDLPGIIEGASEGKGRGRQVIAVSKSS 97 (356)
Q Consensus 20 ~~v~LvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~--~i~~~D~pGl~~~~~~~~~~~~~~~~~~~~~ 97 (356)
..|+|+|++|||||||+|.|++........|.++.+.....+.+++. .+.++||||..... ......++.+
T Consensus 9 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~-------~~~~~~~~~~ 81 (206)
T 2bcg_Y 9 FKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQERFR-------TITSSYYRGS 81 (206)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHCCCCTTCCCSSCCCEEEEEEEETTEEEEEEEECCTTTTTTT-------CCCGGGGTTC
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEeCCChHHHH-------HHHHHhccCC
Confidence 58999999999999999999988765556677777777778888885 67889999953211 1122335678
Q ss_pred hHHHHHHhcCChHHHHHHHHHHHHHccCccccccCcccccceeccceeeeecCCCCCCCHHHHHHHHHHhcccCcEEEEc
Q 018394 98 DIVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNAEVLFR 177 (356)
Q Consensus 98 d~i~~v~d~~~~~~~~~~i~~~L~~~~i~l~~~~~~lS~g~~qr~~ial~~DEp~~~LD~~~~~~il~~l~~~~~~i~~t 177 (356)
|++++|+|...+... +.+..++ ..+..
T Consensus 82 d~vilv~d~~~~~s~-~~~~~~~--------------------------------------------~~i~~-------- 108 (206)
T 2bcg_Y 82 HGIIIVYDVTDQESF-NGVKMWL--------------------------------------------QEIDR-------- 108 (206)
T ss_dssp SEEEEEEETTCHHHH-HHHHHHH--------------------------------------------HHHHH--------
T ss_pred CEEEEEEECcCHHHH-HHHHHHH--------------------------------------------HHHHH--------
Confidence 888888887764321 1121111 11100
Q ss_pred cCCCHHHHHHHHhccccccceEEEeecCCCCChh-----hHHHHhc--CCCEEEeccccccchHHHHHHHHHHh
Q 018394 178 EDATVDDLIDVIEGNRKYMKCVYVYNKIDVIGID-----DVDKLAR--QPNSVVISCNLKLNLDRLLARMWEEM 244 (356)
Q Consensus 178 hd~~~~~~~~~i~~~~~~~p~i~v~NK~Dl~~~~-----~~~~l~~--~~~~i~iSa~~~~~l~~L~~~i~~~l 244 (356)
. .....|+++|+||+|+.... +...+.. ..+++++||++|.|++++.+.+.+.+
T Consensus 109 -----------~--~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~i 169 (206)
T 2bcg_Y 109 -----------Y--ATSTVLKLLVGNKCDLKDKRVVEYDVAKEFADANKMPFLETSALDSTNVEDAFLTMARQI 169 (206)
T ss_dssp -----------H--SCTTCEEEEEEECTTCTTTCCSCHHHHHHHHHHTTCCEEECCTTTCTTHHHHHHHHHHHH
T ss_pred -----------h--cCCCCCEEEEEECCCCccccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHHH
Confidence 0 01135899999999997532 2333322 23689999999999999988887655
No 113
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=99.55 E-value=4.1e-15 Score=125.50 Aligned_cols=150 Identities=15% Similarity=0.106 Sum_probs=95.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCccccccccccccceEEEECCEeecccCccccccccccCccccccccccccchhHH
Q 018394 21 RVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQVIAVSKSSDIV 100 (356)
Q Consensus 21 ~v~LvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~~D~pGl~~~~~~~~~~~~~~~~~~~~~d~i 100 (356)
.|+++|++|||||||+|.+++.... ...| |+......+.+.+..+.++||||..... ......++.+|++
T Consensus 2 ki~~~G~~~~GKssl~~~l~~~~~~-~~~~--t~~~~~~~~~~~~~~~~i~Dt~G~~~~~-------~~~~~~~~~~d~~ 71 (164)
T 1r8s_A 2 RILMVGLDAAGKTTILYKLKLGEIV-TTIP--TIGFNVETVEYKNISFTVWDVGGQDKIR-------PLWRHYFQNTQGL 71 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHCSS-CCCC--CSSCCEEEEECSSCEEEEEECCCCGGGH-------HHHHHHTTTCSEE
T ss_pred EEEEECCCCCCHHHHHHHHHcCCcC-cccC--cCceeEEEEEECCEEEEEEEcCCChhhH-------HHHHHHhccCCEE
Confidence 6899999999999999999876532 2233 5555666777788899999999963211 1111235677888
Q ss_pred HHHHhcCChHHHHHHHHHHHHHccCccccccCcccccceeccceeeeecCCCCCCCHHHHHHHHHHhcccCcEEEEccCC
Q 018394 101 LMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNAEVLFREDA 180 (356)
Q Consensus 101 ~~v~d~~~~~~~~~~i~~~L~~~~i~l~~~~~~lS~g~~qr~~ial~~DEp~~~LD~~~~~~il~~l~~~~~~i~~thd~ 180 (356)
++++|...+..- +.+..++.. +..
T Consensus 72 i~v~d~~~~~s~-~~~~~~~~~--------------------------------------------~~~----------- 95 (164)
T 1r8s_A 72 IFVVDSNDRERV-NEAREELMR--------------------------------------------MLA----------- 95 (164)
T ss_dssp EEEEETTCGGGH-HHHHHHHHH--------------------------------------------HHT-----------
T ss_pred EEEEECCCHHHH-HHHHHHHHH--------------------------------------------HHh-----------
Confidence 888777654221 111111111 000
Q ss_pred CHHHHHHHHhccccccceEEEeecCCCCChh---hHHHHhcC-------CCEEEeccccccchHHHHHHHHHHhC
Q 018394 181 TVDDLIDVIEGNRKYMKCVYVYNKIDVIGID---DVDKLARQ-------PNSVVISCNLKLNLDRLLARMWEEMG 245 (356)
Q Consensus 181 ~~~~~~~~i~~~~~~~p~i~v~NK~Dl~~~~---~~~~l~~~-------~~~i~iSa~~~~~l~~L~~~i~~~l~ 245 (356)
.......|+++|+||+|+.... ++...... .+++++||+++.|++++.+.+.+.+.
T Consensus 96 ---------~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~ 161 (164)
T 1r8s_A 96 ---------EDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLSNQLR 161 (164)
T ss_dssp ---------CGGGTTCEEEEEEECTTSTTCCCHHHHHHHTTGGGCSSCCEEEEECBTTTTBTHHHHHHHHHHHC-
T ss_pred ---------chhhcCCeEEEEEECcCCcCCCCHHHHHHHhCcccccCccEEEEEcccCCCcCHHHHHHHHHHHHh
Confidence 0001136999999999997542 22221110 13788999999999999999987653
No 114
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=99.55 E-value=6.3e-15 Score=129.09 Aligned_cols=83 Identities=20% Similarity=0.236 Sum_probs=57.7
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHcCCCCccccccccccccceEEEECCEe--ecccCccccccccccCccccccccccccc
Q 018394 19 HGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTK--IQLLDLPGIIEGASEGKGRGRQVIAVSKS 96 (356)
Q Consensus 19 g~~v~LvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~--i~~~D~pGl~~~~~~~~~~~~~~~~~~~~ 96 (356)
...|+|+|.+|||||||++.+++.. ..++++.||.+.....+.+++.. +.++||||..... .. ....++.
T Consensus 20 ~~ki~~~G~~~~GKssl~~~l~~~~-~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~----~~---~~~~~~~ 91 (201)
T 2q3h_A 20 GVKCVLVGDGAVGKTSLVVSYTTNG-YPTEYIPTAFDNFSAVVSVDGRPVRLQLCDTAGQDEFD----KL---RPLCYTN 91 (201)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHC---------CCSSEEEEEEEEETTEEEEEEEEECCCSTTCS----SS---GGGGGTT
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCC-CCCCCCCcccceeEEEEEECCEEEEEEEEECCCCHHHH----HH---hHhhcCC
Confidence 5789999999999999999999875 45778889888888888888864 5689999964321 11 1123567
Q ss_pred hhHHHHHHhcCCh
Q 018394 97 SDIVLMVLDASKS 109 (356)
Q Consensus 97 ~d~i~~v~d~~~~ 109 (356)
+|++++|+|...+
T Consensus 92 ~~~~i~v~d~~~~ 104 (201)
T 2q3h_A 92 TDIFLLCFSVVSP 104 (201)
T ss_dssp CSEEEEEEETTCH
T ss_pred CcEEEEEEECCCH
Confidence 8888888887764
No 115
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=99.55 E-value=6.3e-15 Score=125.04 Aligned_cols=151 Identities=21% Similarity=0.228 Sum_probs=97.2
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHcCCCCccccccccccccceEEEECCEeecccCccccccccccCccccccccccccchh
Q 018394 19 HGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQVIAVSKSSD 98 (356)
Q Consensus 19 g~~v~LvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~~D~pGl~~~~~~~~~~~~~~~~~~~~~d 98 (356)
...|+++|++|||||||+|.|++.... .. ..|.......+.+++..+.++||||..... ......++.+|
T Consensus 7 ~~~i~v~G~~~~GKssl~~~l~~~~~~-~~--~~t~~~~~~~~~~~~~~~~~~Dt~G~~~~~-------~~~~~~~~~~d 76 (171)
T 1upt_A 7 EMRILILGLDGAGKTTILYRLQVGEVV-TT--IPTIGFNVETVTYKNLKFQVWDLGGLTSIR-------PYWRCYYSNTD 76 (171)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHSSCC-CC--CCCSSEEEEEEEETTEEEEEEEECCCGGGG-------GGGGGGCTTCS
T ss_pred ccEEEEECCCCCCHHHHHHHHhcCCCC-Cc--CCcCccceEEEEECCEEEEEEECCCChhhh-------HHHHHHhccCC
Confidence 368999999999999999999876532 11 224455566788899999999999964321 11223356788
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHHccCccccccCcccccceeccceeeeecCCCCCCCHHHHHHHHHHhcccCcEEEEcc
Q 018394 99 IVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNAEVLFRE 178 (356)
Q Consensus 99 ~i~~v~d~~~~~~~~~~i~~~L~~~~i~l~~~~~~lS~g~~qr~~ial~~DEp~~~LD~~~~~~il~~l~~~~~~i~~th 178 (356)
++++|+|...+..- +.+..++.. ++..
T Consensus 77 ~ii~v~d~~~~~s~-~~~~~~~~~----------------------------------------~~~~------------ 103 (171)
T 1upt_A 77 AVIYVVDSCDRDRI-GISKSELVA----------------------------------------MLEE------------ 103 (171)
T ss_dssp EEEEEEETTCCTTH-HHHHHHHHH----------------------------------------HHTC------------
T ss_pred EEEEEEECCCHHHH-HHHHHHHHH----------------------------------------HHhc------------
Confidence 88888887654221 111111110 0000
Q ss_pred CCCHHHHHHHHhccccccceEEEeecCCCCChh---hHHHHhc-------CCCEEEeccccccchHHHHHHHHHHh
Q 018394 179 DATVDDLIDVIEGNRKYMKCVYVYNKIDVIGID---DVDKLAR-------QPNSVVISCNLKLNLDRLLARMWEEM 244 (356)
Q Consensus 179 d~~~~~~~~~i~~~~~~~p~i~v~NK~Dl~~~~---~~~~l~~-------~~~~i~iSa~~~~~l~~L~~~i~~~l 244 (356)
......|+++|+||+|+.... ++..... ..+++++||+++.|++++.+.+.+.+
T Consensus 104 ------------~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i 167 (171)
T 1upt_A 104 ------------EELRKAILVVFANKQDMEQAMTSSEMANSLGLPALKDRKWQIFKTSATKGTGLDEAMEWLVETL 167 (171)
T ss_dssp ------------GGGTTCEEEEEEECTTSTTCCCHHHHHHHHTGGGCTTSCEEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred ------------hhhCCCEEEEEEECCCCcCCCCHHHHHHHhCchhccCCceEEEECcCCCCcCHHHHHHHHHHHH
Confidence 001246999999999997542 2222111 01478999999999999999988765
No 116
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=99.54 E-value=1.4e-14 Score=126.31 Aligned_cols=151 Identities=21% Similarity=0.234 Sum_probs=100.4
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcCCCCccccccccccccceEEEECCEee--cccCccccccccccCccccccccccccch
Q 018394 20 GRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKI--QLLDLPGIIEGASEGKGRGRQVIAVSKSS 97 (356)
Q Consensus 20 ~~v~LvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i--~~~D~pGl~~~~~~~~~~~~~~~~~~~~~ 97 (356)
..|+|+|.+|||||||+|.+++... ..+++.|+.+.....+.+++..+ .++||||..... ......++.+
T Consensus 24 ~ki~~vG~~~~GKSsl~~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~-------~~~~~~~~~~ 95 (194)
T 3reg_A 24 LKIVVVGDGAVGKTCLLLAFSKGEI-PTAYVPTVFENFSHVMKYKNEEFILHLWDTAGQEEYD-------RLRPLSYADS 95 (194)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSCC-CSSCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGT-------TTGGGGCTTC
T ss_pred eEEEEECcCCCCHHHHHHHHhcCCC-CCccCCeeeeeeEEEEEECCEEEEEEEEECCCcHHHH-------HHhHhhccCC
Confidence 5899999999999999999998763 45666777666666777887654 889999953211 1122245678
Q ss_pred hHHHHHHhcCChHHHHHHHHHHHHHccCccccccCcccccceeccceeeeecCCCCCCCHHHHHHHHHHhcccCcEEEEc
Q 018394 98 DIVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNAEVLFR 177 (356)
Q Consensus 98 d~i~~v~d~~~~~~~~~~i~~~L~~~~i~l~~~~~~lS~g~~qr~~ial~~DEp~~~LD~~~~~~il~~l~~~~~~i~~t 177 (356)
|++++|+|.............++ ..+
T Consensus 96 d~~i~v~d~~~~~s~~~~~~~~~--------------------------------------------~~~---------- 121 (194)
T 3reg_A 96 DVVLLCFAVNNRTSFDNISTKWE--------------------------------------------PEI---------- 121 (194)
T ss_dssp SEEEEEEETTCHHHHHHHHHTHH--------------------------------------------HHH----------
T ss_pred cEEEEEEECCCHHHHHHHHHHHH--------------------------------------------HHH----------
Confidence 88888888776432211111111 110
Q ss_pred cCCCHHHHHHHHhccccccceEEEeecCCCCCh-------hhHHHHh---cCCCEEEeccccccchHHHHHHHHHHh
Q 018394 178 EDATVDDLIDVIEGNRKYMKCVYVYNKIDVIGI-------DDVDKLA---RQPNSVVISCNLKLNLDRLLARMWEEM 244 (356)
Q Consensus 178 hd~~~~~~~~~i~~~~~~~p~i~v~NK~Dl~~~-------~~~~~l~---~~~~~i~iSa~~~~~l~~L~~~i~~~l 244 (356)
.......|+++|+||+|+... ++...+. ....++++||++|.|++++.+.+.+.+
T Consensus 122 ------------~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i 186 (194)
T 3reg_A 122 ------------KHYIDTAKTVLVGLKVDLRKDGSDDVTKQEGDDLCQKLGCVAYIEASSVAKIGLNEVFEKSVDCI 186 (194)
T ss_dssp ------------HHHCTTSEEEEEEECGGGCCTTTTCCCHHHHHHHHHHHTCSCEEECBTTTTBSHHHHHHHHHHHH
T ss_pred ------------HHhCCCCCEEEEEEChhhccCCCCcccHHHHHHHHHhcCCCEEEEeecCCCCCHHHHHHHHHHHH
Confidence 001113699999999998642 2223332 233489999999999999999998765
No 117
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.54 E-value=3.2e-15 Score=128.64 Aligned_cols=151 Identities=19% Similarity=0.158 Sum_probs=94.7
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHcCCCCccccccccccccceEEEECCEeecccCccccccccccCccccccccccccchh
Q 018394 19 HGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQVIAVSKSSD 98 (356)
Q Consensus 19 g~~v~LvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~~D~pGl~~~~~~~~~~~~~~~~~~~~~d 98 (356)
...|+++|++|||||||+|.+++... .....|.......+.+++..+.++||||..... ......++.+|
T Consensus 18 ~~~i~v~G~~~~GKssli~~l~~~~~---~~~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~-------~~~~~~~~~~d 87 (183)
T 1moz_A 18 ELRILILGLDGAGKTTILYRLQIGEV---VTTKPTIGFNVETLSYKNLKLNVWDLGGQTSIR-------PYWRCYYADTA 87 (183)
T ss_dssp CEEEEEEEETTSSHHHHHHHTCCSEE---EEECSSTTCCEEEEEETTEEEEEEEEC----CC-------TTGGGTTTTEE
T ss_pred ccEEEEECCCCCCHHHHHHHHhcCCc---CccCCcCccceEEEEECCEEEEEEECCCCHhHH-------HHHHHHhccCC
Confidence 46899999999999999999986543 112234445567788889999999999974311 11123356788
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHHccCccccccCcccccceeccceeeeecCCCCCCCHHHHHHHHHHhcccCcEEEEcc
Q 018394 99 IVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNAEVLFRE 178 (356)
Q Consensus 99 ~i~~v~d~~~~~~~~~~i~~~L~~~~i~l~~~~~~lS~g~~qr~~ial~~DEp~~~LD~~~~~~il~~l~~~~~~i~~th 178 (356)
++++++|...+..- +.+..++.. +...
T Consensus 88 ~ii~v~d~~~~~s~-~~~~~~~~~--------------------------------------------~~~~-------- 114 (183)
T 1moz_A 88 AVIFVVDSTDKDRM-STASKELHL--------------------------------------------MLQE-------- 114 (183)
T ss_dssp EEEEEEETTCTTTH-HHHHHHHHH--------------------------------------------HTTS--------
T ss_pred EEEEEEECCCHHHH-HHHHHHHHH--------------------------------------------HHcC--------
Confidence 88888887654221 111111111 1000
Q ss_pred CCCHHHHHHHHhccccccceEEEeecCCCCCh---hhHHHHhcC-------CCEEEeccccccchHHHHHHHHHHh
Q 018394 179 DATVDDLIDVIEGNRKYMKCVYVYNKIDVIGI---DDVDKLARQ-------PNSVVISCNLKLNLDRLLARMWEEM 244 (356)
Q Consensus 179 d~~~~~~~~~i~~~~~~~p~i~v~NK~Dl~~~---~~~~~l~~~-------~~~i~iSa~~~~~l~~L~~~i~~~l 244 (356)
......|+++|+||+|+... +++...... .+++++||+++.|++++.+.+.+.+
T Consensus 115 ------------~~~~~~piilv~nK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~ 178 (183)
T 1moz_A 115 ------------EELQDAALLVFANKQDQPGALSASEVSKELNLVELKDRSWSIVASSAIKGEGITEGLDWLIDVI 178 (183)
T ss_dssp ------------STTSSCEEEEEEECTTSTTCCCHHHHHHHTTTTTCCSSCEEEEEEBGGGTBTHHHHHHHHHHHH
T ss_pred ------------hhhCCCeEEEEEECCCCCCCCCHHHHHHHhCcccccCCceEEEEccCCCCcCHHHHHHHHHHHH
Confidence 00124699999999999753 233322211 1478999999999999999887765
No 118
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=99.54 E-value=1.3e-14 Score=123.95 Aligned_cols=155 Identities=16% Similarity=0.173 Sum_probs=98.5
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcCCCCccccccccccccceEEEECCE--eecccCccccccccccCccccccccccccch
Q 018394 20 GRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDT--KIQLLDLPGIIEGASEGKGRGRQVIAVSKSS 97 (356)
Q Consensus 20 ~~v~LvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~--~i~~~D~pGl~~~~~~~~~~~~~~~~~~~~~ 97 (356)
..|+++|++|||||||+|.|++........|.++.+.....+.+++. .+.++|+||..... ......++.+
T Consensus 8 ~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~-------~~~~~~~~~~ 80 (177)
T 1wms_A 8 FKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQERFR-------SLRTPFYRGS 80 (177)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSCCCC----CCSEEEEEEEEEETTEEEEEEEEECCCCGGGH-------HHHGGGGTTC
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeEEEEEEEECCEEEEEEEEeCCCchhhh-------hhHHHHHhcC
Confidence 58999999999999999999987655555666677777778888885 67889999953211 1112234667
Q ss_pred hHHHHHHhcCChHHHHHHHHHHHHHccCccccccCcccccceeccceeeeecCCCCCCCHHHHHHHHHHhcccCcEEEEc
Q 018394 98 DIVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNAEVLFR 177 (356)
Q Consensus 98 d~i~~v~d~~~~~~~~~~i~~~L~~~~i~l~~~~~~lS~g~~qr~~ial~~DEp~~~LD~~~~~~il~~l~~~~~~i~~t 177 (356)
|++++++|....... +.+..+++. +.
T Consensus 81 ~~~i~v~d~~~~~s~-~~~~~~~~~--------------------------------------------~~--------- 106 (177)
T 1wms_A 81 DCCLLTFSVDDSQSF-QNLSNWKKE--------------------------------------------FI--------- 106 (177)
T ss_dssp SEEEEEEETTCHHHH-HTHHHHHHH--------------------------------------------HH---------
T ss_pred CEEEEEEECcCHHHH-HHHHHHHHH--------------------------------------------HH---------
Confidence 777777776654321 111111111 10
Q ss_pred cCCCHHHHHHHHh-ccccccceEEEeecCCCCC----hhhHHHHhc---CCCEEEeccccccchHHHHHHHHHHh
Q 018394 178 EDATVDDLIDVIE-GNRKYMKCVYVYNKIDVIG----IDDVDKLAR---QPNSVVISCNLKLNLDRLLARMWEEM 244 (356)
Q Consensus 178 hd~~~~~~~~~i~-~~~~~~p~i~v~NK~Dl~~----~~~~~~l~~---~~~~i~iSa~~~~~l~~L~~~i~~~l 244 (356)
.... ......|+++|+||+|+.. .++...+.. ..+++++||++|.|++++.+.+.+.+
T Consensus 107 ---------~~~~~~~~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~ 172 (177)
T 1wms_A 107 ---------YYADVKEPESFPFVILGNKIDISERQVSTEEAQAWCRDNGDYPYFETSAKDATNVAAAFEEAVRRV 172 (177)
T ss_dssp ---------HHHTCSCTTTSCEEEEEECTTCSSCSSCHHHHHHHHHHTTCCCEEECCTTTCTTHHHHHHHHHHHH
T ss_pred ---------HHccccccCCCcEEEEEECCcccccccCHHHHHHHHHhcCCceEEEEeCCCCCCHHHHHHHHHHHH
Confidence 0000 0012469999999999862 223333332 24689999999999999999887654
No 119
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=99.54 E-value=1.1e-14 Score=127.04 Aligned_cols=161 Identities=14% Similarity=0.139 Sum_probs=98.3
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHcCCCCccccccccccccceEEEECCEeecccCccccccccccCccccccccccccchh
Q 018394 19 HGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQVIAVSKSSD 98 (356)
Q Consensus 19 g~~v~LvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~~D~pGl~~~~~~~~~~~~~~~~~~~~~d 98 (356)
...|+|+|.+|||||||+|.|++......+|. .|.......+...+..+.++||||..... ......++.+|
T Consensus 17 ~~ki~v~G~~~~GKSsl~~~l~~~~~~~~~~~-~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~-------~~~~~~~~~~d 88 (199)
T 4bas_A 17 KLQVVMCGLDNSGKTTIINQVKPAQSSSKHIT-ATVGYNVETFEKGRVAFTVFDMGGAKKFR-------GLWETYYDNID 88 (199)
T ss_dssp EEEEEEECCTTSCHHHHHHHHSCCC----CCC-CCSSEEEEEEEETTEEEEEEEECCSGGGG-------GGGGGGCTTCS
T ss_pred CcEEEEECCCCCCHHHHHHHHhcCCCcccccc-cccceeEEEEEeCCEEEEEEECCCCHhHH-------HHHHHHHhcCC
Confidence 36899999999999999999998774431222 23334555667788899999999974321 11123357789
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHHccCccccccCcccccceeccceeeeecCCCCCCCHHHHHHHHHHhcccCcEEEEcc
Q 018394 99 IVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNAEVLFRE 178 (356)
Q Consensus 99 ~i~~v~d~~~~~~~~~~i~~~L~~~~i~l~~~~~~lS~g~~qr~~ial~~DEp~~~LD~~~~~~il~~l~~~~~~i~~th 178 (356)
++++|+|......- +.+..++..+ +....
T Consensus 89 ~ii~v~D~~~~~s~-~~~~~~~~~~----------------------------------------~~~~~---------- 117 (199)
T 4bas_A 89 AVIFVVDSSDHLRL-CVVKSEIQAM----------------------------------------LKHED---------- 117 (199)
T ss_dssp EEEEEEETTCGGGH-HHHHHHHHHH----------------------------------------HTSHH----------
T ss_pred EEEEEEECCcHHHH-HHHHHHHHHH----------------------------------------HhChh----------
Confidence 99999888765321 1111111110 00000
Q ss_pred CCCHHHHHHHHhccccccceEEEeecCCCCCh---hhHHHHh------c--CCCEEEeccccccchHHHHHHHHHHhC
Q 018394 179 DATVDDLIDVIEGNRKYMKCVYVYNKIDVIGI---DDVDKLA------R--QPNSVVISCNLKLNLDRLLARMWEEMG 245 (356)
Q Consensus 179 d~~~~~~~~~i~~~~~~~p~i~v~NK~Dl~~~---~~~~~l~------~--~~~~i~iSa~~~~~l~~L~~~i~~~l~ 245 (356)
+. .........|+++|+||+|+... +++.... + ...++++||+++.|++++.+.|.+.+.
T Consensus 118 ------~~-~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~~~ 188 (199)
T 4bas_A 118 ------IR-RELPGGGRVPFLFFANKMDAAGAKTAAELVEILDLTTLMGDHPFVIFASNGLKGTGVHEGFSWLQETAS 188 (199)
T ss_dssp ------HH-SBCTTSCBCCEEEEEECTTSTTCCCHHHHHHHHTHHHHHTTSCEEEEECBTTTTBTHHHHHHHHHHHHH
T ss_pred ------hh-hcccccCCCCEEEEEECcCCCCCCCHHHHHHHhcchhhccCCeeEEEEeeCCCccCHHHHHHHHHHHHH
Confidence 00 00000114699999999999855 2222111 1 124789999999999999999887653
No 120
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=99.54 E-value=2.7e-15 Score=137.53 Aligned_cols=60 Identities=22% Similarity=0.297 Sum_probs=52.1
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHcCCC-Ccccccc-ccccccceEEEECCEeecccCcccccc
Q 018394 19 HGRVALIGFPSVGKSTLLTLLTGTHS-EAASYEF-TTLTCIPGIIHYNDTKIQLLDLPGIIE 78 (356)
Q Consensus 19 g~~v~LvG~~gaGKSTLln~L~g~~~-~vs~~p~-TT~~~~~G~i~~~g~~i~~~D~pGl~~ 78 (356)
...|+|+|++|||||||+|.|++... ..+..|. +|++...+.+.++|..+.++||||+..
T Consensus 22 ~~~I~lvG~~g~GKStl~n~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~i~iiDTpG~~~ 83 (260)
T 2xtp_A 22 ELRIILVGKTGTGKSAAGNSILRKQAFESKLGSQTLTKTCSKSQGSWGNREIVIIDTPDMFS 83 (260)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHTSCCSCCCTTSCCCCCSCEEEEEEETTEEEEEEECCGGGG
T ss_pred ceEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCceeeeeEEEEEEeCCCEEEEEECcCCCC
Confidence 46899999999999999999999874 4444566 899999999999999999999999864
No 121
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=99.54 E-value=6.5e-15 Score=127.03 Aligned_cols=153 Identities=19% Similarity=0.201 Sum_probs=98.6
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcCCCCccccccccccccceEEEECCEe--ecccCccccccccccCccccccccccccch
Q 018394 20 GRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTK--IQLLDLPGIIEGASEGKGRGRQVIAVSKSS 97 (356)
Q Consensus 20 ~~v~LvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~--i~~~D~pGl~~~~~~~~~~~~~~~~~~~~~ 97 (356)
..|+|+|++|||||||+|.|++.. .+.++++||.+.....+.+++.. +.++||||..... .. ....++.+
T Consensus 5 ~ki~v~G~~~~GKSsli~~l~~~~-~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~----~~---~~~~~~~~ 76 (189)
T 4dsu_A 5 YKLVVVGADGVGKSALTIQLIQNH-FVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYS----AM---RDQYMRTG 76 (189)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSS-CCCCCCTTCCEEEEEEEEETTEEEEEEEEECCCC---C----TT---HHHHHHHC
T ss_pred EEEEEECCCCCCHHHHHHHHHhCC-CCCCCCCCchheEEEEEEECCcEEEEEEEECCCcHHHH----HH---HHHHHhcC
Confidence 579999999999999999999765 45778899988888888888876 5669999953211 00 11123445
Q ss_pred hHHHHHHhcCChHHHHHHHHHHHHHccCccccccCcccccceeccceeeeecCCCCCCCHHHHHHHHHHhcccCcEEEEc
Q 018394 98 DIVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNAEVLFR 177 (356)
Q Consensus 98 d~i~~v~d~~~~~~~~~~i~~~L~~~~i~l~~~~~~lS~g~~qr~~ial~~DEp~~~LD~~~~~~il~~l~~~~~~i~~t 177 (356)
|.+++++|...+... +.+..++ ..+.
T Consensus 77 ~~~i~v~d~~~~~s~-~~~~~~~--------------------------------------------~~~~--------- 102 (189)
T 4dsu_A 77 EGFLCVFAINNTKSF-EDIHHYR--------------------------------------------EQIK--------- 102 (189)
T ss_dssp SEEEEEEETTCHHHH-HHHHHHH--------------------------------------------HHHH---------
T ss_pred CEEEEEEECCCHHHH-HHHHHHH--------------------------------------------HHHH---------
Confidence 666666666543221 1111111 1110
Q ss_pred cCCCHHHHHHHHhccccccceEEEeecCCCCCh----hhHHHHhc--CCCEEEeccccccchHHHHHHHHHHhC
Q 018394 178 EDATVDDLIDVIEGNRKYMKCVYVYNKIDVIGI----DDVDKLAR--QPNSVVISCNLKLNLDRLLARMWEEMG 245 (356)
Q Consensus 178 hd~~~~~~~~~i~~~~~~~p~i~v~NK~Dl~~~----~~~~~l~~--~~~~i~iSa~~~~~l~~L~~~i~~~l~ 245 (356)
... .....|+++|+||+|+... +....+.. ..+++++||++|.|++++.+.+.+.+.
T Consensus 103 ---------~~~--~~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~~~ 165 (189)
T 4dsu_A 103 ---------RVK--DSEDVPMVLVGNKCDLPSRTVDTKQAQDLARSYGIPFIETSAKTRQGVDDAFYTLVREIR 165 (189)
T ss_dssp ---------HHT--TCSCCCEEEEEECTTSSSCSSCHHHHHHHHHHHTCCEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred ---------Hhc--CCCCCcEEEEEECccCcccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 000 1124699999999999742 22333322 246899999999999999988877654
No 122
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=99.54 E-value=3.4e-15 Score=128.62 Aligned_cols=152 Identities=16% Similarity=0.142 Sum_probs=80.0
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcCCCCccccccccccccceEEEECC--EeecccCccccccccccCccccccccccccch
Q 018394 20 GRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYND--TKIQLLDLPGIIEGASEGKGRGRQVIAVSKSS 97 (356)
Q Consensus 20 ~~v~LvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g--~~i~~~D~pGl~~~~~~~~~~~~~~~~~~~~~ 97 (356)
..|+|+|++|||||||+|.+++........|.++.+.....+.++| ..+.++|+||..... ......++.+
T Consensus 9 ~ki~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~-------~~~~~~~~~~ 81 (183)
T 2fu5_C 9 FKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQERFR-------TITTAYYRGA 81 (183)
T ss_dssp EEEEEECCCCC----------------CHHHHHCEEEEEEEEEETTEEEEEEEEEC----------------CCTTTTTC
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCCCCCCcccceeEEEEEEECCEEEEEEEEcCCCChhhh-------hhHHHHHhcC
Confidence 4799999999999999999998765555667777777777888888 568889999963211 1112235678
Q ss_pred hHHHHHHhcCChHHHHHHHHHHHHHccCccccccCcccccceeccceeeeecCCCCCCCHHHHHHHHHHhcccCcEEEEc
Q 018394 98 DIVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNAEVLFR 177 (356)
Q Consensus 98 d~i~~v~d~~~~~~~~~~i~~~L~~~~i~l~~~~~~lS~g~~qr~~ial~~DEp~~~LD~~~~~~il~~l~~~~~~i~~t 177 (356)
|++++|+|...+.. .+.+..++ ..+..
T Consensus 82 d~~i~v~d~~~~~s-~~~~~~~~--------------------------------------------~~i~~-------- 108 (183)
T 2fu5_C 82 MGIMLVYDITNEKS-FDNIRNWI--------------------------------------------RNIEE-------- 108 (183)
T ss_dssp SEEEEEEETTCHHH-HHHHHHHH--------------------------------------------HHHHH--------
T ss_pred CEEEEEEECcCHHH-HHHHHHHH--------------------------------------------HHHHH--------
Confidence 88888888776432 11222111 11110
Q ss_pred cCCCHHHHHHHHhccccccceEEEeecCCCCCh-----hhHHHHhc--CCCEEEeccccccchHHHHHHHHHHh
Q 018394 178 EDATVDDLIDVIEGNRKYMKCVYVYNKIDVIGI-----DDVDKLAR--QPNSVVISCNLKLNLDRLLARMWEEM 244 (356)
Q Consensus 178 hd~~~~~~~~~i~~~~~~~p~i~v~NK~Dl~~~-----~~~~~l~~--~~~~i~iSa~~~~~l~~L~~~i~~~l 244 (356)
. .....|+++|+||+|+... ++...+.. ..+++++||+++.|++++.+.+.+.+
T Consensus 109 -----------~--~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~i 169 (183)
T 2fu5_C 109 -----------H--ASADVEKMILGNKCDVNDKRQVSKERGEKLALDYGIKFMETSAKANINVENAFFTLARDI 169 (183)
T ss_dssp -----------H--SCTTCEEEEEEEC--CCSCCCSCHHHHHHHHHHHTCEEEECCC---CCHHHHHHHHHHHH
T ss_pred -----------h--cCCCCCEEEEEECccCCccCcCCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHHH
Confidence 0 0113599999999999642 22333321 23588999999999999988887654
No 123
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=99.54 E-value=1.5e-14 Score=127.08 Aligned_cols=156 Identities=15% Similarity=0.172 Sum_probs=101.5
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcCCCCccccccccccccceEEEECC--EeecccCccccccccccCccccccccccccch
Q 018394 20 GRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYND--TKIQLLDLPGIIEGASEGKGRGRQVIAVSKSS 97 (356)
Q Consensus 20 ~~v~LvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g--~~i~~~D~pGl~~~~~~~~~~~~~~~~~~~~~ 97 (356)
..|+|+|++|||||||+|.|++........|.+|.+.....+.+++ ..+.++||||...... .....++.+
T Consensus 9 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~-------~~~~~~~~~ 81 (207)
T 1vg8_A 9 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQERFQS-------LGVAFYRGA 81 (207)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEESSSCEEEEEEEEECSSGGGSC-------SCCGGGTTC
T ss_pred eEEEEECcCCCCHHHHHHHHHcCCCCCCCCCcccceEEEEEEEECCEEEEEEEEeCCCcHHHHH-------hHHHHHhCC
Confidence 5899999999999999999998875544556666777777777776 4678899999533211 112235678
Q ss_pred hHHHHHHhcCChHHHHHHHHHHHHHccCccccccCcccccceeccceeeeecCCCCCCCHHHHHHHHHHhcccCcEEEEc
Q 018394 98 DIVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNAEVLFR 177 (356)
Q Consensus 98 d~i~~v~d~~~~~~~~~~i~~~L~~~~i~l~~~~~~lS~g~~qr~~ial~~DEp~~~LD~~~~~~il~~l~~~~~~i~~t 177 (356)
|++++|+|...+... +.+..++.. +.....
T Consensus 82 d~~i~v~d~~~~~s~-~~~~~~~~~----------------------------------------~~~~~~--------- 111 (207)
T 1vg8_A 82 DCCVLVFDVTAPNTF-KTLDSWRDE----------------------------------------FLIQAS--------- 111 (207)
T ss_dssp SEEEEEEETTCHHHH-HTHHHHHHH----------------------------------------HHHHHC---------
T ss_pred cEEEEEEECCCHHHH-HHHHHHHHH----------------------------------------HHHhcc---------
Confidence 888888887764321 111111111 000000
Q ss_pred cCCCHHHHHHHHhccccccceEEEeecCCCCCh----hhHHHHhc---CCCEEEeccccccchHHHHHHHHHHh
Q 018394 178 EDATVDDLIDVIEGNRKYMKCVYVYNKIDVIGI----DDVDKLAR---QPNSVVISCNLKLNLDRLLARMWEEM 244 (356)
Q Consensus 178 hd~~~~~~~~~i~~~~~~~p~i~v~NK~Dl~~~----~~~~~l~~---~~~~i~iSa~~~~~l~~L~~~i~~~l 244 (356)
.......|+++|+||+|+... ++...+.. ..+++++||++|.|++++.+.+.+.+
T Consensus 112 ------------~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~~ 173 (207)
T 1vg8_A 112 ------------PRDPENFPFVVLGNKIDLENRQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTIARNA 173 (207)
T ss_dssp ------------CSSGGGSCEEEEEECTTSSCCCSCHHHHHHHHHHTTSCCEEECBTTTTBSHHHHHHHHHHHH
T ss_pred ------------cccCCCCcEEEEEECCCCcccccCHHHHHHHHHhcCCceEEEEeCCCCCCHHHHHHHHHHHH
Confidence 000124699999999999732 22333322 24589999999999999998887654
No 124
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=99.54 E-value=8.4e-15 Score=124.18 Aligned_cols=154 Identities=18% Similarity=0.165 Sum_probs=89.4
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcCCCCccccccccccccceEEEECCEe--ecccCccccccccccCccccccccccccch
Q 018394 20 GRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTK--IQLLDLPGIIEGASEGKGRGRQVIAVSKSS 97 (356)
Q Consensus 20 ~~v~LvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~--i~~~D~pGl~~~~~~~~~~~~~~~~~~~~~ 97 (356)
..|+|+|++|||||||+|.+++........+.+|.+.....+.+++.. +.++|+||...... . .....++.+
T Consensus 3 ~ki~ivG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~----~--~~~~~~~~~ 76 (169)
T 3q85_A 3 FKVMLVGESGVGKSTLAGTFGGLQGDHAHEMENSEDTYERRIMVDKEEVTLIVYDIWEQGDAGG----W--LQDHCLQTG 76 (169)
T ss_dssp EEEEEECSTTSSHHHHHHHHHCC------------CEEEEEEEETTEEEEEEEECCCCC--------------CHHHHHC
T ss_pred EEEEEECCCCCCHHHHHHHHHhccCcccccCCCcCCeeeEEEEECCeEEEEEEEECCCccccch----h--hhhhhhccC
Confidence 479999999999999999999877655566777888888888898854 56789998632110 0 001123446
Q ss_pred hHHHHHHhcCChHHHHHHHHHHHHHccCccccccCcccccceeccceeeeecCCCCCCCHHHHHHHHHHhcccCcEEEEc
Q 018394 98 DIVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNAEVLFR 177 (356)
Q Consensus 98 d~i~~v~d~~~~~~~~~~i~~~L~~~~i~l~~~~~~lS~g~~qr~~ial~~DEp~~~LD~~~~~~il~~l~~~~~~i~~t 177 (356)
|++++++|...+.. .+.+..++ ..+.
T Consensus 77 d~~i~v~d~~~~~s-~~~~~~~~--------------------------------------------~~~~--------- 102 (169)
T 3q85_A 77 DAFLIVFSVTDRRS-FSKVPETL--------------------------------------------LRLR--------- 102 (169)
T ss_dssp SEEEEEEETTCHHH-HHTHHHHH--------------------------------------------HHHH---------
T ss_pred CEEEEEEECCChHH-HHHHHHHH--------------------------------------------HHHH---------
Confidence 66667777655322 11111111 1110
Q ss_pred cCCCHHHHHHHHhccccccceEEEeecCCCCCh-----hhHHHHhc--CCCEEEeccccccchHHHHHHHHHHh
Q 018394 178 EDATVDDLIDVIEGNRKYMKCVYVYNKIDVIGI-----DDVDKLAR--QPNSVVISCNLKLNLDRLLARMWEEM 244 (356)
Q Consensus 178 hd~~~~~~~~~i~~~~~~~p~i~v~NK~Dl~~~-----~~~~~l~~--~~~~i~iSa~~~~~l~~L~~~i~~~l 244 (356)
.. . .....|+++|+||+|+... ++...+.. ..+++++||+++.|++++.+.+.+.+
T Consensus 103 ---------~~-~-~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~i 165 (169)
T 3q85_A 103 ---------AG-R-PHHDLPVILVGNKSDLARSREVSLEEGRHLAGTLSCKHIETSAALHHNTRELFEGAVRQI 165 (169)
T ss_dssp ---------HH-S-TTSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECBTTTTBSHHHHHHHHHHHH
T ss_pred ---------hc-c-cCCCCCEEEEeeCcchhhcccCCHHHHHHHHHHcCCcEEEecCccCCCHHHHHHHHHHHH
Confidence 00 0 0114699999999998632 22333322 23578999999999999999988765
No 125
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=99.53 E-value=1.4e-14 Score=124.03 Aligned_cols=157 Identities=15% Similarity=0.175 Sum_probs=95.6
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHcCCCCccccccccccccceEEEECC---EeecccCccccccccccCcccccccccccc
Q 018394 19 HGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYND---TKIQLLDLPGIIEGASEGKGRGRQVIAVSK 95 (356)
Q Consensus 19 g~~v~LvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g---~~i~~~D~pGl~~~~~~~~~~~~~~~~~~~ 95 (356)
...|+++|++|||||||+|.|++........|.++.+.....+.+++ ..+.++|+||..... ......++
T Consensus 8 ~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~-------~~~~~~~~ 80 (182)
T 1ky3_A 8 ILKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDTAGQERFQ-------SLGVAFYR 80 (182)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHSCCCTTC---CCCSCEEEEECCSSSCCEEEEEECCC-----------------CCST
T ss_pred eEEEEEECCCCCCHHHHHHHHHhCcCCcccCCccceEEEEEEEEEcCCcEEEEEEEECCCChHhh-------hhhHHHhh
Confidence 35899999999999999999998765444456666777777777762 467889999953211 11122356
Q ss_pred chhHHHHHHhcCChHHHHHHHHHHHHHccCccccccCcccccceeccceeeeecCCCCCCCHHHHHHHHHHhcccCcEEE
Q 018394 96 SSDIVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNAEVL 175 (356)
Q Consensus 96 ~~d~i~~v~d~~~~~~~~~~i~~~L~~~~i~l~~~~~~lS~g~~qr~~ial~~DEp~~~LD~~~~~~il~~l~~~~~~i~ 175 (356)
.+|.+++++|...+... +.+..++.. +.....
T Consensus 81 ~~d~~i~v~d~~~~~s~-~~~~~~~~~----------------------------------------~~~~~~------- 112 (182)
T 1ky3_A 81 GADCCVLVYDVTNASSF-ENIKSWRDE----------------------------------------FLVHAN------- 112 (182)
T ss_dssp TCCEEEEEEETTCHHHH-HTHHHHHHH----------------------------------------HHHHHC-------
T ss_pred cCCEEEEEEECCChHHH-HHHHHHHHH----------------------------------------HHHHhc-------
Confidence 78888888887664321 111111111 000000
Q ss_pred EccCCCHHHHHHHHhccccccceEEEeecCCCCCh------hhHHHHhc---CCCEEEeccccccchHHHHHHHHHHh
Q 018394 176 FREDATVDDLIDVIEGNRKYMKCVYVYNKIDVIGI------DDVDKLAR---QPNSVVISCNLKLNLDRLLARMWEEM 244 (356)
Q Consensus 176 ~thd~~~~~~~~~i~~~~~~~p~i~v~NK~Dl~~~------~~~~~l~~---~~~~i~iSa~~~~~l~~L~~~i~~~l 244 (356)
.......|+++|+||+|+... ++...+.. ..+++++||++|.|++++.+.+.+.+
T Consensus 113 --------------~~~~~~~p~ilv~nK~Dl~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~ 176 (182)
T 1ky3_A 113 --------------VNSPETFPFVILGNKIDAEESKKIVSEKSAQELAKSLGDIPLFLTSAKNAINVDTAFEEIARSA 176 (182)
T ss_dssp --------------CSCTTTCCEEEEEECTTSCGGGCCSCHHHHHHHHHHTTSCCEEEEBTTTTBSHHHHHHHHHHHH
T ss_pred --------------ccCcCCCcEEEEEECCccccccccCCHHHHHHHHHhcCCCeEEEEecCCCCCHHHHHHHHHHHH
Confidence 001124699999999998532 22333332 34689999999999999999887654
No 126
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=99.53 E-value=1.3e-14 Score=124.63 Aligned_cols=153 Identities=20% Similarity=0.195 Sum_probs=100.8
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcCCCCccccccccccccceEEEECCE--eecccCccccccccccCccccccccccccch
Q 018394 20 GRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDT--KIQLLDLPGIIEGASEGKGRGRQVIAVSKSS 97 (356)
Q Consensus 20 ~~v~LvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~--~i~~~D~pGl~~~~~~~~~~~~~~~~~~~~~ 97 (356)
..|+|+|++|||||||+|.|++.. .+++++.|+.+.....+.+++. .+.++|+||..... . .....++.+
T Consensus 7 ~ki~~~G~~~~GKSsli~~l~~~~-~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~----~---~~~~~~~~~ 78 (181)
T 3t5g_A 7 RKIAILGYRSVGKSSLTIQFVEGQ-FVDSYDPTIENTFTKLITVNGQEYHLQLVDTAGQDEYS----I---FPQTYSIDI 78 (181)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSS-CCSCCCTTCCEEEEEEEEETTEEEEEEEEECCCCCTTC----C---CCGGGTTTC
T ss_pred EEEEEECcCCCCHHHHHHHHHcCC-CCCCCCCCccccEEEEEEECCEEEEEEEEeCCCchhhh----H---HHHHHHhcC
Confidence 589999999999999999999654 4567778888777788888885 45789999964321 1 111234667
Q ss_pred hHHHHHHhcCChHHHHHHHHHHHHHccCccccccCcccccceeccceeeeecCCCCCCCHHHHHHHHHHhcccCcEEEEc
Q 018394 98 DIVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNAEVLFR 177 (356)
Q Consensus 98 d~i~~v~d~~~~~~~~~~i~~~L~~~~i~l~~~~~~lS~g~~qr~~ial~~DEp~~~LD~~~~~~il~~l~~~~~~i~~t 177 (356)
|.+++++|...... .+.+..++.. +++.
T Consensus 79 ~~~i~v~d~~~~~s-~~~~~~~~~~----------------------------------------~~~~----------- 106 (181)
T 3t5g_A 79 NGYILVYSVTSIKS-FEVIKVIHGK----------------------------------------LLDM----------- 106 (181)
T ss_dssp SEEEEEEETTCHHH-HHHHHHHHHH----------------------------------------HHHH-----------
T ss_pred CEEEEEEECCCHHH-HHHHHHHHHH----------------------------------------HHHh-----------
Confidence 88888877765432 1112211111 1000
Q ss_pred cCCCHHHHHHHHhccccccceEEEeecCCCCCh-----hhHHHHhc--CCCEEEeccccccchHHHHHHHHHHhC
Q 018394 178 EDATVDDLIDVIEGNRKYMKCVYVYNKIDVIGI-----DDVDKLAR--QPNSVVISCNLKLNLDRLLARMWEEMG 245 (356)
Q Consensus 178 hd~~~~~~~~~i~~~~~~~p~i~v~NK~Dl~~~-----~~~~~l~~--~~~~i~iSa~~~~~l~~L~~~i~~~l~ 245 (356)
. .....|+++|+||+|+... ++...+.. ..+++++||+++.|++++.+.+.+.+.
T Consensus 107 -----------~--~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~~~ 168 (181)
T 3t5g_A 107 -----------V--GKVQIPIMLVGNKKDLHMERVISYEEGKALAESWNAAFLESSAKENQTAVDVFRRIILEAE 168 (181)
T ss_dssp -----------C------CCEEEEEECTTCTTTCCSCHHHHHHHHHHTTCEEEECCTTSHHHHHHHHHHHHHHHH
T ss_pred -----------c--CCCCCCEEEEEECccchhcceecHHHHHHHHHHhCCcEEEEecCCCCCHHHHHHHHHHHHH
Confidence 0 0113699999999998632 23333322 234889999999999999999987664
No 127
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.53 E-value=2e-14 Score=123.16 Aligned_cols=153 Identities=19% Similarity=0.194 Sum_probs=99.6
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcCCCC-ccccccccccccceEEEECCE--eecccCccccccccccCccccccccccccc
Q 018394 20 GRVALIGFPSVGKSTLLTLLTGTHSE-AASYEFTTLTCIPGIIHYNDT--KIQLLDLPGIIEGASEGKGRGRQVIAVSKS 96 (356)
Q Consensus 20 ~~v~LvG~~gaGKSTLln~L~g~~~~-vs~~p~TT~~~~~G~i~~~g~--~i~~~D~pGl~~~~~~~~~~~~~~~~~~~~ 96 (356)
..|+|+|++|||||||+|.|++.... ....|.++.+.....+.+++. .+.++|+||..... ......++.
T Consensus 11 ~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~-------~~~~~~~~~ 83 (180)
T 2g6b_A 11 FKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWDTAGQERFR-------SVTHAYYRD 83 (180)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSCCCCCCCCCCCSCEEEEEEEEETTEEEEEEEEECCCC---------------CCGGG
T ss_pred eEEEEECcCCCCHHHHHHHHHhCCCCCCCcCCceeeEEEEEEEEECCEEEEEEEEeCCCcHHHH-------HHHHHHccC
Confidence 58999999999999999999987753 344566777776677778875 67889999953211 112223567
Q ss_pred hhHHHHHHhcCChHHHHHHHHHHHHHccCccccccCcccccceeccceeeeecCCCCCCCHHHHHHHHHHhcccCcEEEE
Q 018394 97 SDIVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNAEVLF 176 (356)
Q Consensus 97 ~d~i~~v~d~~~~~~~~~~i~~~L~~~~i~l~~~~~~lS~g~~qr~~ial~~DEp~~~LD~~~~~~il~~l~~~~~~i~~ 176 (356)
+|++++|+|...+.. .+.+..++ ..+.
T Consensus 84 ~d~ii~v~d~~~~~s-~~~~~~~~--------------------------------------------~~i~-------- 110 (180)
T 2g6b_A 84 AHALLLLYDVTNKAS-FDNIQAWL--------------------------------------------TEIH-------- 110 (180)
T ss_dssp CSEEEEEEETTCHHH-HHTHHHHH--------------------------------------------HHHH--------
T ss_pred CCEEEEEEECCCHHH-HHHHHHHH--------------------------------------------HHHH--------
Confidence 888888888766432 11111111 1110
Q ss_pred ccCCCHHHHHHHHhccccccceEEEeecCCCCCh-----hhHHHHhc--CCCEEEeccccccchHHHHHHHHHHhC
Q 018394 177 REDATVDDLIDVIEGNRKYMKCVYVYNKIDVIGI-----DDVDKLAR--QPNSVVISCNLKLNLDRLLARMWEEMG 245 (356)
Q Consensus 177 thd~~~~~~~~~i~~~~~~~p~i~v~NK~Dl~~~-----~~~~~l~~--~~~~i~iSa~~~~~l~~L~~~i~~~l~ 245 (356)
.. .....|+++|+||+|+... ++...+.. ..+++++||+++.|++++.+.+.+.+.
T Consensus 111 -----------~~--~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~ 173 (180)
T 2g6b_A 111 -----------EY--AQHDVALMLLGNKVDSAHERVVKREDGEKLAKEYGLPFMETSAKTGLNVDLAFTAIAKELK 173 (180)
T ss_dssp -----------HH--SCTTCEEEEEEECCSTTSCCCSCHHHHHHHHHHHTCCEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred -----------Hh--CCCCCcEEEEEECcccCcccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 00 0123699999999999743 22333321 236899999999999999999887663
No 128
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.53 E-value=1.1e-14 Score=126.30 Aligned_cols=153 Identities=16% Similarity=0.171 Sum_probs=98.1
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHcCCCCccccccccccccceEEEECCEeecccCccccccccccCccccccccccccchh
Q 018394 19 HGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQVIAVSKSSD 98 (356)
Q Consensus 19 g~~v~LvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~~D~pGl~~~~~~~~~~~~~~~~~~~~~d 98 (356)
...|+++|.+|||||||+|.|++.... . ...|.......+.+++..+.++||||..... ......++.+|
T Consensus 16 ~~~i~v~G~~~~GKssl~~~l~~~~~~-~--~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~-------~~~~~~~~~~d 85 (187)
T 1zj6_A 16 EHKVIIVGLDNAGKTTILYQFSMNEVV-H--TSPTIGSNVEEIVINNTRFLMWDIGGQESLR-------SSWNTYYTNTE 85 (187)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHTTSCE-E--EECCSCSSCEEEEETTEEEEEEECCC----C-------GGGHHHHTTCC
T ss_pred ccEEEEECCCCCCHHHHHHHHhcCCCC-c--CcCCCccceEEEEECCEEEEEEECCCCHhHH-------HHHHHHhcCCC
Confidence 468999999999999999999976533 1 2335556677888999999999999964311 11112346678
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHHccCccccccCcccccceeccceeeeecCCCCCCCHHHHHHHHHHhcccCcEEEEcc
Q 018394 99 IVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNAEVLFRE 178 (356)
Q Consensus 99 ~i~~v~d~~~~~~~~~~i~~~L~~~~i~l~~~~~~lS~g~~qr~~ial~~DEp~~~LD~~~~~~il~~l~~~~~~i~~th 178 (356)
++++|+|...+..- +.+..++ ..+..
T Consensus 86 ~ii~v~d~~~~~s~-~~~~~~~--------------------------------------------~~~~~--------- 111 (187)
T 1zj6_A 86 FVIVVVDSTDRERI-SVTREEL--------------------------------------------YKMLA--------- 111 (187)
T ss_dssp EEEEEEETTCTTTH-HHHHHHH--------------------------------------------HHHHT---------
T ss_pred EEEEEEeCCCHHHH-HHHHHHH--------------------------------------------HHHHh---------
Confidence 88888877654211 1111111 11100
Q ss_pred CCCHHHHHHHHhccccccceEEEeecCCCCCh---hhHHHHhc---C----CCEEEeccccccchHHHHHHHHHHhCc
Q 018394 179 DATVDDLIDVIEGNRKYMKCVYVYNKIDVIGI---DDVDKLAR---Q----PNSVVISCNLKLNLDRLLARMWEEMGL 246 (356)
Q Consensus 179 d~~~~~~~~~i~~~~~~~p~i~v~NK~Dl~~~---~~~~~l~~---~----~~~i~iSa~~~~~l~~L~~~i~~~l~~ 246 (356)
.......|+++|+||+|+... +++..... . ..++++||++|.|++++.+.+.+.+..
T Consensus 112 -----------~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~~~~ 178 (187)
T 1zj6_A 112 -----------HEDLRKAGLLIFANKQDVKECMTVAEISQFLKLTSIKDHQWHIQACCALTGEGLCQGLEWMMSRLKI 178 (187)
T ss_dssp -----------SGGGTTCEEEEEEECTTSTTCCCHHHHHHHHTGGGCCSSCEEEEECBTTTTBTHHHHHHHHHHHHCC
T ss_pred -----------chhhCCCeEEEEEECCCCcCCCCHHHHHHHhChhhhcCCCcEEEEccCCCCcCHHHHHHHHHHHHHH
Confidence 000124699999999999753 33322211 1 147899999999999999999887743
No 129
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=99.53 E-value=1e-14 Score=126.70 Aligned_cols=153 Identities=19% Similarity=0.213 Sum_probs=96.0
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHcCCCCccccccccccccceEEEECCEeecccCccccccccccCccccccccccccchh
Q 018394 19 HGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQVIAVSKSSD 98 (356)
Q Consensus 19 g~~v~LvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~~D~pGl~~~~~~~~~~~~~~~~~~~~~d 98 (356)
...|+|+|++|||||||+|.|++...... ...|.......+...+..+.++|+||...... .....++.+|
T Consensus 22 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~--~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~-------~~~~~~~~~d 92 (188)
T 1zd9_A 22 EMELTLVGLQYSGKTTFVNVIASGQFNED--MIPTVGFNMRKITKGNVTIKLWDIGGQPRFRS-------MWERYCRGVS 92 (188)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCCCCS--CCCCCSEEEEEEEETTEEEEEEEECCSHHHHT-------THHHHHTTCS
T ss_pred ccEEEEECCCCCCHHHHHHHHHcCCCCCc--cCCCCceeEEEEEeCCEEEEEEECCCCHhHHH-------HHHHHHccCC
Confidence 36899999999999999999997654311 12344444456777889999999999643210 1112346677
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHHccCccccccCcccccceeccceeeeecCCCCCCCHHHHHHHHHHhcccCcEEEEcc
Q 018394 99 IVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNAEVLFRE 178 (356)
Q Consensus 99 ~i~~v~d~~~~~~~~~~i~~~L~~~~i~l~~~~~~lS~g~~qr~~ial~~DEp~~~LD~~~~~~il~~l~~~~~~i~~th 178 (356)
++++|+|....... +.+..++.. +++.
T Consensus 93 ~ii~v~D~~~~~s~-~~~~~~~~~----------------------------------------~~~~------------ 119 (188)
T 1zd9_A 93 AIVYMVDAADQEKI-EASKNELHN----------------------------------------LLDK------------ 119 (188)
T ss_dssp EEEEEEETTCGGGH-HHHHHHHHH----------------------------------------HHTC------------
T ss_pred EEEEEEECCCHHHH-HHHHHHHHH----------------------------------------HHhC------------
Confidence 78888877654221 111111111 0000
Q ss_pred CCCHHHHHHHHhccccccceEEEeecCCCCChh---hHHHHhc-------CCCEEEeccccccchHHHHHHHHHHhC
Q 018394 179 DATVDDLIDVIEGNRKYMKCVYVYNKIDVIGID---DVDKLAR-------QPNSVVISCNLKLNLDRLLARMWEEMG 245 (356)
Q Consensus 179 d~~~~~~~~~i~~~~~~~p~i~v~NK~Dl~~~~---~~~~l~~-------~~~~i~iSa~~~~~l~~L~~~i~~~l~ 245 (356)
......|+++|+||+|+.... ++..... ...++++||++|.|+++|.+.+.+.+.
T Consensus 120 ------------~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gv~~l~~~l~~~~~ 184 (188)
T 1zd9_A 120 ------------PQLQGIPVLVLGNKRDLPGALDEKELIEKMNLSAIQDREICCYSISCKEKDNIDITLQWLIQHSK 184 (188)
T ss_dssp ------------GGGTTCCEEEEEECTTSTTCCCHHHHHHHTTGGGCCSSCEEEEECCTTTCTTHHHHHHHHHHTCC
T ss_pred ------------cccCCCCEEEEEECCCCccCCCHHHHHHHhChhhhccCCeeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 001246999999999997532 2222111 113689999999999999999987664
No 130
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=99.53 E-value=2.3e-14 Score=124.80 Aligned_cols=82 Identities=17% Similarity=0.165 Sum_probs=60.7
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcCCCCccccccccccccceEEEECC--EeecccCccccccccccCccccccccccccch
Q 018394 20 GRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYND--TKIQLLDLPGIIEGASEGKGRGRQVIAVSKSS 97 (356)
Q Consensus 20 ~~v~LvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g--~~i~~~D~pGl~~~~~~~~~~~~~~~~~~~~~ 97 (356)
..|+++|++|||||||++.+++.. ...+++.|+.+.....+.+++ ..+.++|+||..... ......++.+
T Consensus 19 ~ki~v~G~~~~GKssli~~l~~~~-~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~-------~~~~~~~~~~ 90 (194)
T 2atx_A 19 LKCVVVGDGAVGKTCLLMSYANDA-FPEEYVPTVFDHYAVSVTVGGKQYLLGLYDTAGQEDYD-------RLRPLSYPMT 90 (194)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHSS-CCCSCCCSSCCCEEEEEESSSCEEEEEEECCCCSSSST-------TTGGGGCTTC
T ss_pred EEEEEECCCCCCHHHHHHHHhcCC-CCCCCCCcccceeEEEEEECCEEEEEEEEECCCCcchh-------HHHHHhcCCC
Confidence 589999999999999999999874 346777888777766777777 567889999963211 1112235678
Q ss_pred hHHHHHHhcCCh
Q 018394 98 DIVLMVLDASKS 109 (356)
Q Consensus 98 d~i~~v~d~~~~ 109 (356)
|++++|+|...+
T Consensus 91 d~~i~v~d~~~~ 102 (194)
T 2atx_A 91 DVFLICFSVVNP 102 (194)
T ss_dssp SEEEEEEETTCH
T ss_pred CEEEEEEECCCH
Confidence 888888887664
No 131
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=99.52 E-value=1.3e-14 Score=124.77 Aligned_cols=152 Identities=15% Similarity=0.115 Sum_probs=98.6
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcCCCCccccccccccccceEEEECCEe--ecccCccccccccccCccccccccccccch
Q 018394 20 GRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTK--IQLLDLPGIIEGASEGKGRGRQVIAVSKSS 97 (356)
Q Consensus 20 ~~v~LvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~--i~~~D~pGl~~~~~~~~~~~~~~~~~~~~~ 97 (356)
..|+++|++|||||||++.+++... ...+..|+.+.....+.+++.. +.++||||..... ......++.+
T Consensus 6 ~~i~~~G~~~~GKssl~~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~-------~~~~~~~~~~ 77 (186)
T 1mh1_A 6 IKCVVVGDGAVGKTCLLISYTTNAF-PGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYD-------RLRPLSYPQT 77 (186)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSSC-CSSCCCCSCCEEEEEEEETTEEEEEEEECCCCSGGGT-------TTGGGGCTTC
T ss_pred EEEEEECCCCCCHHHHHHHHHcCCC-CCCcCCcccceeEEEEEECCEEEEEEEEECCCCHhHH-------HHHHHhccCC
Confidence 5799999999999999999997543 3556677766666677778765 4588999974321 1111235678
Q ss_pred hHHHHHHhcCChHHHHHHHHHHHHHccCccccccCcccccceeccceeeeecCCCCCCCHHHHHHHHHHhcccCcEEEEc
Q 018394 98 DIVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNAEVLFR 177 (356)
Q Consensus 98 d~i~~v~d~~~~~~~~~~i~~~L~~~~i~l~~~~~~lS~g~~qr~~ial~~DEp~~~LD~~~~~~il~~l~~~~~~i~~t 177 (356)
|++++|+|...+.........++ ..+
T Consensus 78 d~~i~v~d~~~~~s~~~~~~~~~--------------------------------------------~~~---------- 103 (186)
T 1mh1_A 78 DVSLICFSLVSPASFENVRAKWY--------------------------------------------PEV---------- 103 (186)
T ss_dssp SEEEEEEETTCHHHHHHHHHTHH--------------------------------------------HHH----------
T ss_pred cEEEEEEECCChhhHHHHHHHHH--------------------------------------------HHH----------
Confidence 88888888776432211100111 110
Q ss_pred cCCCHHHHHHHHhccccccceEEEeecCCCCChh-----------------hHHHHhc---CCCEEEeccccccchHHHH
Q 018394 178 EDATVDDLIDVIEGNRKYMKCVYVYNKIDVIGID-----------------DVDKLAR---QPNSVVISCNLKLNLDRLL 237 (356)
Q Consensus 178 hd~~~~~~~~~i~~~~~~~p~i~v~NK~Dl~~~~-----------------~~~~l~~---~~~~i~iSa~~~~~l~~L~ 237 (356)
.......|+++|+||+|+.... +...+.. ..+++++||++|.|+++|.
T Consensus 104 ------------~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~ 171 (186)
T 1mh1_A 104 ------------RHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVF 171 (186)
T ss_dssp ------------HHHSTTSCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECCTTTCTTHHHHH
T ss_pred ------------HHhCCCCCEEEEeEcccccccchhhhhhcccccccCCHHHHHHHHHhcCCcEEEEecCCCccCHHHHH
Confidence 0001136999999999986432 1111221 1258899999999999999
Q ss_pred HHHHHHhC
Q 018394 238 ARMWEEMG 245 (356)
Q Consensus 238 ~~i~~~l~ 245 (356)
+.+.+.+-
T Consensus 172 ~~l~~~~~ 179 (186)
T 1mh1_A 172 DEAIRAVL 179 (186)
T ss_dssp HHHHHHHS
T ss_pred HHHHHHHh
Confidence 99988763
No 132
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=99.52 E-value=8.5e-15 Score=126.71 Aligned_cols=150 Identities=17% Similarity=0.192 Sum_probs=93.3
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHcCCCC-ccccccccccccceEEEECCEeecccCccccccccccCccccccccccccch
Q 018394 19 HGRVALIGFPSVGKSTLLTLLTGTHSE-AASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQVIAVSKSS 97 (356)
Q Consensus 19 g~~v~LvG~~gaGKSTLln~L~g~~~~-vs~~p~TT~~~~~G~i~~~g~~i~~~D~pGl~~~~~~~~~~~~~~~~~~~~~ 97 (356)
...|+|+|++|||||||++.|++.... +.+ |.......+.+++..+.++||||..... ......++.+
T Consensus 16 ~~ki~ivG~~~vGKSsL~~~l~~~~~~~~~~----t~g~~~~~~~~~~~~l~i~Dt~G~~~~~-------~~~~~~~~~~ 84 (181)
T 1fzq_A 16 EVRILLLGLDNAGKTTLLKQLASEDISHITP----TQGFNIKSVQSQGFKLNVWDIGGQRKIR-------PYWRSYFENT 84 (181)
T ss_dssp CEEEEEEESTTSSHHHHHHHHCCSCCEEEEE----ETTEEEEEEEETTEEEEEEECSSCGGGH-------HHHHHHHTTC
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCCcccC----cCCeEEEEEEECCEEEEEEECCCCHHHH-------HHHHHHhCCC
Confidence 468999999999999999999987421 111 2222233677889999999999953211 1112234667
Q ss_pred hHHHHHHhcCChHHHHHHHHHHHHHccCccccccCcccccceeccceeeeecCCCCCCCHHHHHHHHHHhcccCcEEEEc
Q 018394 98 DIVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNAEVLFR 177 (356)
Q Consensus 98 d~i~~v~d~~~~~~~~~~i~~~L~~~~i~l~~~~~~lS~g~~qr~~ial~~DEp~~~LD~~~~~~il~~l~~~~~~i~~t 177 (356)
|++++++|......- +.+..++..+ ++.
T Consensus 85 ~~~i~v~d~~~~~s~-~~~~~~~~~~----------------------------------------~~~----------- 112 (181)
T 1fzq_A 85 DILIYVIDSADRKRF-EETGQELTEL----------------------------------------LEE----------- 112 (181)
T ss_dssp SEEEEEEETTCGGGH-HHHHHHHHHH----------------------------------------TTC-----------
T ss_pred CEEEEEEECcCHHHH-HHHHHHHHHH----------------------------------------HhC-----------
Confidence 777777777654221 1111111110 000
Q ss_pred cCCCHHHHHHHHhccccccceEEEeecCCCCChhhHHHHh---c-------CCCEEEeccccccchHHHHHHHHHHh
Q 018394 178 EDATVDDLIDVIEGNRKYMKCVYVYNKIDVIGIDDVDKLA---R-------QPNSVVISCNLKLNLDRLLARMWEEM 244 (356)
Q Consensus 178 hd~~~~~~~~~i~~~~~~~p~i~v~NK~Dl~~~~~~~~l~---~-------~~~~i~iSa~~~~~l~~L~~~i~~~l 244 (356)
......|+++|+||+|+......+++. . ...++++||++|.|++++.+.+.+.+
T Consensus 113 -------------~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~~ 176 (181)
T 1fzq_A 113 -------------EKLSCVPVLIFANKQDLLTAAPASEIAEGLNLHTIRDRVWQIQSCSALTGEGVQDGMNWVCKNV 176 (181)
T ss_dssp -------------GGGTTCCEEEEEECTTSTTCCCHHHHHHHTTGGGCCSSCEEEEECCTTTCTTHHHHHHHHHHTC
T ss_pred -------------hhhcCCCEEEEEECcCcccCCCHHHHHHHhCchhccCCceEEEEccCCCCCCHHHHHHHHHHHH
Confidence 001236999999999997542222221 1 11378899999999999999988755
No 133
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=99.52 E-value=9.4e-15 Score=125.99 Aligned_cols=152 Identities=18% Similarity=0.153 Sum_probs=101.4
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcCCCCccccccccccccceEEEECC--EeecccCccccccccccCccccccccccccch
Q 018394 20 GRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYND--TKIQLLDLPGIIEGASEGKGRGRQVIAVSKSS 97 (356)
Q Consensus 20 ~~v~LvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g--~~i~~~D~pGl~~~~~~~~~~~~~~~~~~~~~ 97 (356)
..|+|+|++|||||||+|.|++........|.++.+.....+.+++ ..+.++|+||..... ......++.+
T Consensus 11 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~-------~~~~~~~~~~ 83 (186)
T 2bme_A 11 FKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQERFR-------SVTRSYYRGA 83 (186)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCSEEEEEEEEEEETTEEEEEEEEEECCSGGGH-------HHHHTTSTTC
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCcHHHH-------HHHHHHHhcC
Confidence 5899999999999999999998776555667777777778888888 467899999953211 1122345678
Q ss_pred hHHHHHHhcCChHHHHHHHHHHHHHccCccccccCcccccceeccceeeeecCCCCCCCHHHHHHHHHHhcccCcEEEEc
Q 018394 98 DIVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNAEVLFR 177 (356)
Q Consensus 98 d~i~~v~d~~~~~~~~~~i~~~L~~~~i~l~~~~~~lS~g~~qr~~ial~~DEp~~~LD~~~~~~il~~l~~~~~~i~~t 177 (356)
|++++++|...+... +.+..++ ..+.
T Consensus 84 d~~i~v~d~~~~~s~-~~~~~~~--------------------------------------------~~~~--------- 109 (186)
T 2bme_A 84 AGALLVYDITSRETY-NALTNWL--------------------------------------------TDAR--------- 109 (186)
T ss_dssp SEEEEEEETTCHHHH-HTHHHHH--------------------------------------------HHHH---------
T ss_pred CEEEEEEECcCHHHH-HHHHHHH--------------------------------------------HHHH---------
Confidence 888888887664321 1111111 1110
Q ss_pred cCCCHHHHHHHHhccccccceEEEeecCCCCCh-----hhHHHHhc--CCCEEEeccccccchHHHHHHHHHHh
Q 018394 178 EDATVDDLIDVIEGNRKYMKCVYVYNKIDVIGI-----DDVDKLAR--QPNSVVISCNLKLNLDRLLARMWEEM 244 (356)
Q Consensus 178 hd~~~~~~~~~i~~~~~~~p~i~v~NK~Dl~~~-----~~~~~l~~--~~~~i~iSa~~~~~l~~L~~~i~~~l 244 (356)
.. .....|+++|+||+|+... .+...+.. ...++++||+++.|++++.+.+.+.+
T Consensus 110 ----------~~--~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~ 171 (186)
T 2bme_A 110 ----------ML--ASQNIVIILCGNKKDLDADREVTFLEASRFAQENELMFLETSALTGENVEEAFVQCARKI 171 (186)
T ss_dssp ----------HH--SCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred ----------Hh--cCCCCcEEEEEECcccccccccCHHHHHHHHHHcCCEEEEecCCCCCCHHHHHHHHHHHH
Confidence 00 0123599999999998632 22222222 23478999999999999988887654
No 134
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=99.52 E-value=9.2e-15 Score=124.98 Aligned_cols=155 Identities=17% Similarity=0.139 Sum_probs=99.5
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcCCCCccccccccccccceEEEECC---EeecccCccccccccccCccccccccccccc
Q 018394 20 GRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYND---TKIQLLDLPGIIEGASEGKGRGRQVIAVSKS 96 (356)
Q Consensus 20 ~~v~LvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g---~~i~~~D~pGl~~~~~~~~~~~~~~~~~~~~ 96 (356)
..|+|+|++|||||||+|.|++........|.++.+.....+.+++ ..+.++||||..... . .....++.
T Consensus 7 ~ki~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~----~---~~~~~~~~ 79 (178)
T 2hxs_A 7 LKIVVLGDGASGKTSLTTCFAQETFGKQYKQTIGLDFFLRRITLPGNLNVTLQIWDIGGQTIGG----K---MLDKYIYG 79 (178)
T ss_dssp EEEEEECCTTSSHHHHHHHHHGGGTTHHHHHTTTSSEEEEEEEETTTEEEEEEEEECTTCCTTC----T---THHHHHTT
T ss_pred EEEEEECcCCCCHHHHHHHHHhCcCCCCCCCceeEEEEEEEEEeCCCCEEEEEEEECCCCcccc----c---hhhHHHhh
Confidence 5799999999999999999998764423335555677778888887 678999999953211 1 11223567
Q ss_pred hhHHHHHHhcCChHHHHHHHHHHHHHccCccccccCcccccceeccceeeeecCCCCCCCHHHHHHHHHHhcccCcEEEE
Q 018394 97 SDIVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNAEVLF 176 (356)
Q Consensus 97 ~d~i~~v~d~~~~~~~~~~i~~~L~~~~i~l~~~~~~lS~g~~qr~~ial~~DEp~~~LD~~~~~~il~~l~~~~~~i~~ 176 (356)
+|++++|+|...+... +.+..++. .+.
T Consensus 80 ~d~~i~v~d~~~~~s~-~~~~~~~~--------------------------------------------~i~-------- 106 (178)
T 2hxs_A 80 AQGVLLVYDITNYQSF-ENLEDWYT--------------------------------------------VVK-------- 106 (178)
T ss_dssp CSEEEEEEETTCHHHH-HTHHHHHH--------------------------------------------HHH--------
T ss_pred CCEEEEEEECCCHHHH-HHHHHHHH--------------------------------------------HHH--------
Confidence 8888888887664321 11111111 110
Q ss_pred ccCCCHHHHHHHHhccccccc-eEEEeecCCCCCh-----hhHHHHhc--CCCEEEeccccccchHHHHHHHHHHhC
Q 018394 177 REDATVDDLIDVIEGNRKYMK-CVYVYNKIDVIGI-----DDVDKLAR--QPNSVVISCNLKLNLDRLLARMWEEMG 245 (356)
Q Consensus 177 thd~~~~~~~~~i~~~~~~~p-~i~v~NK~Dl~~~-----~~~~~l~~--~~~~i~iSa~~~~~l~~L~~~i~~~l~ 245 (356)
.... .....| +++|+||+|+... ++...+.. ..+++++||+++.|++++.+.+.+.+.
T Consensus 107 ----------~~~~-~~~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~ 172 (178)
T 2hxs_A 107 ----------KVSE-ESETQPLVALVGNKIDLEHMRTIKPEKHLRFCQENGFSSHFVSAKTGDSVFLCFQKVAAEIL 172 (178)
T ss_dssp ----------HHHH-HHTCCCEEEEEEECGGGGGGCSSCHHHHHHHHHHHTCEEEEECTTTCTTHHHHHHHHHHHHT
T ss_pred ----------HHhc-ccCCCCeEEEEEEccccccccccCHHHHHHHHHHcCCcEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 0000 001235 7899999998642 23333322 235789999999999999999987663
No 135
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=99.52 E-value=8.5e-15 Score=129.26 Aligned_cols=84 Identities=18% Similarity=0.209 Sum_probs=60.5
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHcCCCCccccccccccccceEEEECCEeec--ccCccccccccccCccccccccccccc
Q 018394 19 HGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQ--LLDLPGIIEGASEGKGRGRQVIAVSKS 96 (356)
Q Consensus 19 g~~v~LvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~--~~D~pGl~~~~~~~~~~~~~~~~~~~~ 96 (356)
...|+++|.+|||||||++.+++.. ....++.||.+.....+.+++..+. ++||||..... ......++.
T Consensus 30 ~~ki~vvG~~~~GKSsLi~~l~~~~-~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~-------~~~~~~~~~ 101 (204)
T 4gzl_A 30 AIKCVVVGDGAVGKTCLLISYTTNA-FPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGLEDYD-------RLRPLSYPQ 101 (204)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHSC-CCC-CCCCSEEEEEEEEECC-CEEEEEEEEECCSGGGT-------TTGGGGCTT
T ss_pred eEEEEEECcCCCCHHHHHHHHHhCC-CCCCcCCeecceeEEEEEECCEEEEEEEEECCCchhhH-------HHHHHHhcc
Confidence 4799999999999999999999754 3466778888877777788876554 89999963321 111224567
Q ss_pred hhHHHHHHhcCChH
Q 018394 97 SDIVLMVLDASKSE 110 (356)
Q Consensus 97 ~d~i~~v~d~~~~~ 110 (356)
+|++++|+|.....
T Consensus 102 ~d~~i~v~d~~~~~ 115 (204)
T 4gzl_A 102 TDVFLICFSLVSPA 115 (204)
T ss_dssp CSEEEEEEETTCHH
T ss_pred CCEEEEEEECCCHH
Confidence 88888888877643
No 136
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=99.52 E-value=9.7e-15 Score=123.02 Aligned_cols=152 Identities=20% Similarity=0.195 Sum_probs=95.5
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcCCCCccccccccccccceEEEECCE--eecccCccccccccccCccccccccccccch
Q 018394 20 GRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDT--KIQLLDLPGIIEGASEGKGRGRQVIAVSKSS 97 (356)
Q Consensus 20 ~~v~LvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~--~i~~~D~pGl~~~~~~~~~~~~~~~~~~~~~ 97 (356)
..|+++|++|||||||+|.|++.. ....++.|+.+.....+.+++. .+.++|+||..... ......++.+
T Consensus 5 ~~i~v~G~~~~GKssl~~~l~~~~-~~~~~~~t~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~-------~~~~~~~~~~ 76 (168)
T 1u8z_A 5 HKVIMVGSGGVGKSALTLQFMYDE-FVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDYA-------AIRDNYFRSG 76 (168)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSC-CCSCCCTTCCEEEEEEEEETTEEEEEEEEECCC---CH-------HHHHHHHHHC
T ss_pred EEEEEECCCCCCHHHHHHHHHhCc-cCCCCCCCcceEEEEEEEECCEEEEEEEEECCCcchhH-------HHHHHHhhcC
Confidence 479999999999999999999865 3456777877777777788875 67889999953211 0111123445
Q ss_pred hHHHHHHhcCChHHHHHHHHHHHHHccCccccccCcccccceeccceeeeecCCCCCCCHHHHHHHHHHhcccCcEEEEc
Q 018394 98 DIVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNAEVLFR 177 (356)
Q Consensus 98 d~i~~v~d~~~~~~~~~~i~~~L~~~~i~l~~~~~~lS~g~~qr~~ial~~DEp~~~LD~~~~~~il~~l~~~~~~i~~t 177 (356)
|.+++++|...+.. .+.+..+ +..+.
T Consensus 77 d~~i~v~d~~~~~s-~~~~~~~--------------------------------------------~~~i~--------- 102 (168)
T 1u8z_A 77 EGFLCVFSITEMES-FAATADF--------------------------------------------REQIL--------- 102 (168)
T ss_dssp SEEEEEEETTCHHH-HHHHHHH--------------------------------------------HHHHH---------
T ss_pred CEEEEEEECCCHHH-HHHHHHH--------------------------------------------HHHHH---------
Confidence 66666666654322 1111111 11110
Q ss_pred cCCCHHHHHHHHhccccccceEEEeecCCCCCh-----hhHHHHhc--CCCEEEeccccccchHHHHHHHHHHh
Q 018394 178 EDATVDDLIDVIEGNRKYMKCVYVYNKIDVIGI-----DDVDKLAR--QPNSVVISCNLKLNLDRLLARMWEEM 244 (356)
Q Consensus 178 hd~~~~~~~~~i~~~~~~~p~i~v~NK~Dl~~~-----~~~~~l~~--~~~~i~iSa~~~~~l~~L~~~i~~~l 244 (356)
... .....|+++|+||+|+... ++...+.. ..+++++||+++.|++++.+.+.+.+
T Consensus 103 ---------~~~--~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i 165 (168)
T 1u8z_A 103 ---------RVK--EDENVPFLLVGNKSDLEDKRQVSVEEAKNRADQWNVNYVETSAKTRANVDKVFFDLMREI 165 (168)
T ss_dssp ---------HHH--CCTTSCEEEEEECGGGGGGCCSCHHHHHHHHHHHTCEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred ---------Hhc--CCCCCcEEEEEECccccccCccCHHHHHHHHHHcCCeEEEeCCCCCCCHHHHHHHHHHHH
Confidence 000 0113699999999998643 22222221 23588999999999999999887654
No 137
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=99.52 E-value=7.7e-15 Score=128.30 Aligned_cols=151 Identities=16% Similarity=0.117 Sum_probs=94.7
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHcCCCCccccccccccccceEEEECCEeecccCccccccccccCccccccccccccchh
Q 018394 19 HGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQVIAVSKSSD 98 (356)
Q Consensus 19 g~~v~LvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~~D~pGl~~~~~~~~~~~~~~~~~~~~~d 98 (356)
...|+|+|++|||||||+|.+++.... .. ..|++.....+.+++..+.++||||..... ......++.+|
T Consensus 29 ~~ki~v~G~~~vGKSsLi~~l~~~~~~-~~--~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~-------~~~~~~~~~~d 98 (192)
T 2b6h_A 29 QMRILMVGLDAAGKTTILYKLKLGEIV-TT--IPTIGFNVETVEYKNICFTVWDVGGQDKIR-------PLWRHYFQNTQ 98 (192)
T ss_dssp CEEEEEEESTTSSHHHHHHHHCSSCCE-EE--EEETTEEEEEEEETTEEEEEEECC-----C-------TTHHHHHHTCC
T ss_pred ccEEEEECCCCCCHHHHHHHHHhCCcc-cc--CCcCceeEEEEEECCEEEEEEECCCCHhHH-------HHHHHHhccCC
Confidence 478999999999999999999876532 22 236666667788889999999999963211 01112345677
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHHccCccccccCcccccceeccceeeeecCCCCCCCHHHHHHHHHHhcccCcEEEEcc
Q 018394 99 IVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNAEVLFRE 178 (356)
Q Consensus 99 ~i~~v~d~~~~~~~~~~i~~~L~~~~i~l~~~~~~lS~g~~qr~~ial~~DEp~~~LD~~~~~~il~~l~~~~~~i~~th 178 (356)
++++|+|...+.. .+.+..++.. +..
T Consensus 99 ~iilv~D~~~~~s-~~~~~~~l~~--------------------------------------------~~~--------- 124 (192)
T 2b6h_A 99 GLIFVVDSNDRER-VQESADELQK--------------------------------------------MLQ--------- 124 (192)
T ss_dssp EEEEEEETTCGGG-HHHHHHHHHH--------------------------------------------HHT---------
T ss_pred EEEEEEECCCHHH-HHHHHHHHHH--------------------------------------------Hhc---------
Confidence 7777777765422 1111111111 000
Q ss_pred CCCHHHHHHHHhccccccceEEEeecCCCCChh---hHHHHhcC-------CCEEEeccccccchHHHHHHHHHHh
Q 018394 179 DATVDDLIDVIEGNRKYMKCVYVYNKIDVIGID---DVDKLARQ-------PNSVVISCNLKLNLDRLLARMWEEM 244 (356)
Q Consensus 179 d~~~~~~~~~i~~~~~~~p~i~v~NK~Dl~~~~---~~~~l~~~-------~~~i~iSa~~~~~l~~L~~~i~~~l 244 (356)
.......|+++|+||+|+.... ++...... .+++++||++|.|++++.+.+.+.+
T Consensus 125 -----------~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~~~l~~~i 189 (192)
T 2b6h_A 125 -----------EDELRDAVLLVFANKQDMPNAMPVSELTDKLGLQHLRSRTWYVQATCATQGTGLYDGLDWLSHEL 189 (192)
T ss_dssp -----------CGGGTTCEEEEEEECTTSTTCCCHHHHHHHTTGGGCSSCCEEEEECBTTTTBTHHHHHHHHHHHT
T ss_pred -----------ccccCCCeEEEEEECCCCCCCCCHHHHHHHhCcccccCCceEEEECcCCCcCCHHHHHHHHHHHH
Confidence 0001136999999999997542 22221111 1378999999999999999998765
No 138
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=99.52 E-value=1.2e-14 Score=124.40 Aligned_cols=153 Identities=20% Similarity=0.235 Sum_probs=99.1
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcCCCCccccccccccccceEEEECCE--eecccCccccccccccCccccccccccccch
Q 018394 20 GRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDT--KIQLLDLPGIIEGASEGKGRGRQVIAVSKSS 97 (356)
Q Consensus 20 ~~v~LvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~--~i~~~D~pGl~~~~~~~~~~~~~~~~~~~~~ 97 (356)
..|+|+|.+|||||||+|.|++.. .+.+++.||.+.....+.+++. .+.++|+||..... .. ....++.+
T Consensus 10 ~~i~v~G~~~~GKssli~~l~~~~-~~~~~~~t~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~----~~---~~~~~~~~ 81 (181)
T 2fn4_A 10 HKLVVVGGGGVGKSALTIQFIQSY-FVSDYDPTIEDSYTKICSVDGIPARLDILDTAGQEEFG----AM---REQYMRAG 81 (181)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHSS-CCSSCCTTCCEEEEEEEEETTEEEEEEEEECCCTTTTS----CC---HHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHHhCc-CccccCCCcCceEEEEEEECCEEEEEEEEECCCchhhH----HH---HHHHHhhC
Confidence 589999999999999999999873 4567888888877777888875 57789999953211 11 11123456
Q ss_pred hHHHHHHhcCChHHHHHHHHHHHHHccCccccccCcccccceeccceeeeecCCCCCCCHHHHHHHHHHhcccCcEEEEc
Q 018394 98 DIVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNAEVLFR 177 (356)
Q Consensus 98 d~i~~v~d~~~~~~~~~~i~~~L~~~~i~l~~~~~~lS~g~~qr~~ial~~DEp~~~LD~~~~~~il~~l~~~~~~i~~t 177 (356)
|.+++++|....... +.+..++. ++++.
T Consensus 82 d~~i~v~d~~~~~s~-~~~~~~~~----------------------------------------~~~~~----------- 109 (181)
T 2fn4_A 82 HGFLLVFAINDRQSF-NEVGKLFT----------------------------------------QILRV----------- 109 (181)
T ss_dssp SEEEEEEETTCHHHH-HHHHHHHH----------------------------------------HHHHH-----------
T ss_pred CEEEEEEeCCCHHHH-HHHHHHHH----------------------------------------HHHHh-----------
Confidence 666666666553221 11111111 11110
Q ss_pred cCCCHHHHHHHHhccccccceEEEeecCCCCCh-----hhHHHHhc--CCCEEEeccccccchHHHHHHHHHHhC
Q 018394 178 EDATVDDLIDVIEGNRKYMKCVYVYNKIDVIGI-----DDVDKLAR--QPNSVVISCNLKLNLDRLLARMWEEMG 245 (356)
Q Consensus 178 hd~~~~~~~~~i~~~~~~~p~i~v~NK~Dl~~~-----~~~~~l~~--~~~~i~iSa~~~~~l~~L~~~i~~~l~ 245 (356)
. .....|+++|+||+|+... ++...+.. ...++++||++|.|++++.+.+.+.+.
T Consensus 110 -----------~--~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~~~ 171 (181)
T 2fn4_A 110 -----------K--DRDDFPVVLVGNKADLESQRQVPRSEASAFGASHHVAYFEASAKLRLNVDEAFEQLVRAVR 171 (181)
T ss_dssp -----------H--TSSCCCEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECBTTTTBSHHHHHHHHHHHHH
T ss_pred -----------c--CCCCCCEEEEEECcccccccccCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHHHHHH
Confidence 0 1124699999999998643 22233322 235789999999999999998887653
No 139
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.52 E-value=1.7e-14 Score=127.45 Aligned_cols=152 Identities=18% Similarity=0.190 Sum_probs=100.8
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcCCCCccccccccccccceEEEECCE--eecccCccccccccccCccccccccccccch
Q 018394 20 GRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDT--KIQLLDLPGIIEGASEGKGRGRQVIAVSKSS 97 (356)
Q Consensus 20 ~~v~LvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~--~i~~~D~pGl~~~~~~~~~~~~~~~~~~~~~ 97 (356)
..|+|+|++|||||||+|.|++........|.++.+.....+.++|. .+.++||||..... ......++.+
T Consensus 27 ~ki~lvG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~-------~~~~~~~~~~ 99 (201)
T 2ew1_A 27 FKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQERFR-------SITQSYYRSA 99 (201)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGH-------HHHGGGSTTC
T ss_pred eEEEEECcCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHHHH-------HHHHHHHhcC
Confidence 48999999999999999999987655455566667777778888885 67889999953211 1122345678
Q ss_pred hHHHHHHhcCChHHHHHHHHHHHHHccCccccccCcccccceeccceeeeecCCCCCCCHHHHHHHHHHhcccCcEEEEc
Q 018394 98 DIVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNAEVLFR 177 (356)
Q Consensus 98 d~i~~v~d~~~~~~~~~~i~~~L~~~~i~l~~~~~~lS~g~~qr~~ial~~DEp~~~LD~~~~~~il~~l~~~~~~i~~t 177 (356)
|++++++|...... .+.+..++ ..+.
T Consensus 100 d~~i~v~D~~~~~s-~~~~~~~~--------------------------------------------~~i~--------- 125 (201)
T 2ew1_A 100 NALILTYDITCEES-FRCLPEWL--------------------------------------------REIE--------- 125 (201)
T ss_dssp SEEEEEEETTCHHH-HHTHHHHH--------------------------------------------HHHH---------
T ss_pred CEEEEEEECCCHHH-HHHHHHHH--------------------------------------------HHHH---------
Confidence 88888888766432 11111111 1110
Q ss_pred cCCCHHHHHHHHhccccccceEEEeecCCCCCh-----hhHHHHhc--CCCEEEeccccccchHHHHHHHHHHh
Q 018394 178 EDATVDDLIDVIEGNRKYMKCVYVYNKIDVIGI-----DDVDKLAR--QPNSVVISCNLKLNLDRLLARMWEEM 244 (356)
Q Consensus 178 hd~~~~~~~~~i~~~~~~~p~i~v~NK~Dl~~~-----~~~~~l~~--~~~~i~iSa~~~~~l~~L~~~i~~~l 244 (356)
.. .....|+++|+||+|+... ++...+.. ...++++||++|.|++++.+.+.+.+
T Consensus 126 ----------~~--~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~i 187 (201)
T 2ew1_A 126 ----------QY--ASNKVITVLVGNKIDLAERREVSQQRAEEFSEAQDMYYLETSAKESDNVEKLFLDLACRL 187 (201)
T ss_dssp ----------HH--SCTTCEEEEEEECGGGGGGCSSCHHHHHHHHHHHTCCEEECCTTTCTTHHHHHHHHHHHH
T ss_pred ----------Hh--cCCCCCEEEEEECCCCccccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHH
Confidence 00 0113589999999998632 22333321 24589999999999999988887654
No 140
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=99.52 E-value=1.2e-14 Score=123.95 Aligned_cols=152 Identities=16% Similarity=0.210 Sum_probs=100.7
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcCCCCccccccccccccceEEEECCE--eecccCccccccccccCccccccccccccch
Q 018394 20 GRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDT--KIQLLDLPGIIEGASEGKGRGRQVIAVSKSS 97 (356)
Q Consensus 20 ~~v~LvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~--~i~~~D~pGl~~~~~~~~~~~~~~~~~~~~~ 97 (356)
..|+|+|++|||||||+|.|++........|.+|.+.....+.+++. .+.++||||..... ......++.+
T Consensus 15 ~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~-------~~~~~~~~~~ 87 (179)
T 2y8e_A 15 FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFR-------SLIPSYIRDS 87 (179)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGG-------GGSHHHHHTC
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEECCCcHHHH-------HHHHHHhcCC
Confidence 58999999999999999999987665556677888888888888884 67889999953211 1111224567
Q ss_pred hHHHHHHhcCChHHHHHHHHHHHHHccCccccccCcccccceeccceeeeecCCCCCCCHHHHHHHHHHhcccCcEEEEc
Q 018394 98 DIVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNAEVLFR 177 (356)
Q Consensus 98 d~i~~v~d~~~~~~~~~~i~~~L~~~~i~l~~~~~~lS~g~~qr~~ial~~DEp~~~LD~~~~~~il~~l~~~~~~i~~t 177 (356)
|++++++|...+... +.+..+ +..+.
T Consensus 88 d~~i~v~d~~~~~s~-~~~~~~--------------------------------------------~~~i~--------- 113 (179)
T 2y8e_A 88 TVAVVVYDITNTNSF-HQTSKW--------------------------------------------IDDVR--------- 113 (179)
T ss_dssp SEEEEEEETTCHHHH-HTHHHH--------------------------------------------HHHHH---------
T ss_pred CEEEEEEECCCHHHH-HHHHHH--------------------------------------------HHHHH---------
Confidence 777777776653221 111111 11110
Q ss_pred cCCCHHHHHHHHhccccccceEEEeecCCCCChh-----hHHHHhc--CCCEEEeccccccchHHHHHHHHHHh
Q 018394 178 EDATVDDLIDVIEGNRKYMKCVYVYNKIDVIGID-----DVDKLAR--QPNSVVISCNLKLNLDRLLARMWEEM 244 (356)
Q Consensus 178 hd~~~~~~~~~i~~~~~~~p~i~v~NK~Dl~~~~-----~~~~l~~--~~~~i~iSa~~~~~l~~L~~~i~~~l 244 (356)
.. .....|+++|+||+|+.... +...+.. ..+++++||+++.|++++.+.+.+.+
T Consensus 114 ---------~~---~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~ 175 (179)
T 2y8e_A 114 ---------TE---RGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAAL 175 (179)
T ss_dssp ---------HH---HTTSSEEEEEEECGGGGGGCCSCHHHHHHHHHHHTCEEEEEBTTTTBSHHHHHHHHHHTC
T ss_pred ---------Hh---cCCCCcEEEEEECCcccccCcCCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHHH
Confidence 00 01135899999999986432 2222221 23578999999999999999998765
No 141
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=99.51 E-value=1e-14 Score=128.06 Aligned_cols=155 Identities=19% Similarity=0.181 Sum_probs=100.5
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHcCCCCccccccccccccceEEEECCEee--cccCccccccccccCccccccccccccc
Q 018394 19 HGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKI--QLLDLPGIIEGASEGKGRGRQVIAVSKS 96 (356)
Q Consensus 19 g~~v~LvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i--~~~D~pGl~~~~~~~~~~~~~~~~~~~~ 96 (356)
...|+|+|.+|||||||+|.+++........|++|.+.....+.+++..+ .++||+|..... .... ...++.
T Consensus 23 ~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~----~~~~--~~~~~~ 96 (195)
T 3cbq_A 23 IFKVMLVGESGVGKSTLAGTFGGLQGDSAHEPENPEDTYERRIMVDKEEVTLVVYDIWEQGDAG----GWLR--DHCLQT 96 (195)
T ss_dssp EEEEEEECSTTSSHHHHHHHTCCEECCGGGTTTSCTTEEEEEEEETTEEEEEEEECCCCCSGGG----HHHH--HHHHHH
T ss_pred EEEEEEECCCCCCHHHHHHHHHhccCCccCCCCcccceEEEEEEECCEEEEEEEEecCCCccch----hhhH--HHhhcc
Confidence 36899999999999999999998766666788899998889999998754 567999853210 0000 012345
Q ss_pred hhHHHHHHhcCChHHHHHHHHHHHHHccCccccccCcccccceeccceeeeecCCCCCCCHHHHHHHHHHhcccCcEEEE
Q 018394 97 SDIVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNAEVLF 176 (356)
Q Consensus 97 ~d~i~~v~d~~~~~~~~~~i~~~L~~~~i~l~~~~~~lS~g~~qr~~ial~~DEp~~~LD~~~~~~il~~l~~~~~~i~~ 176 (356)
+|++++|+|...+.. .+.+.. ++..+..
T Consensus 97 ~d~~ilv~d~~~~~s-~~~~~~--------------------------------------------~~~~i~~------- 124 (195)
T 3cbq_A 97 GDAFLIVFSVTDRRS-FSKVPE--------------------------------------------TLLRLRA------- 124 (195)
T ss_dssp CSEEEEEEETTCHHH-HHTHHH--------------------------------------------HHHHHHH-------
T ss_pred CCEEEEEEECCCHHH-HHHHHH--------------------------------------------HHHHHHH-------
Confidence 666666666654322 111111 1111110
Q ss_pred ccCCCHHHHHHHHhccccccceEEEeecCCCCCh-----hhHHHHhc--CCCEEEeccccccchHHHHHHHHHHh
Q 018394 177 REDATVDDLIDVIEGNRKYMKCVYVYNKIDVIGI-----DDVDKLAR--QPNSVVISCNLKLNLDRLLARMWEEM 244 (356)
Q Consensus 177 thd~~~~~~~~~i~~~~~~~p~i~v~NK~Dl~~~-----~~~~~l~~--~~~~i~iSa~~~~~l~~L~~~i~~~l 244 (356)
.. .....|+++|.||+|+... ++...+.+ ...++++||+++.|++++.+.+.+.+
T Consensus 125 ------------~~-~~~~~piilv~nK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~Sa~~~~~v~~lf~~l~~~i 186 (195)
T 3cbq_A 125 ------------GR-PHHDLPVILVGNKSDLARSREVSLEEGRHLAGTLSCKHIETSAALHHNTRELFEGAVRQI 186 (195)
T ss_dssp ------------HS-TTSCCCEEEEEECTTCTTTCCSCHHHHHHHHHHTTCEEEEEBTTTTBSHHHHHHHHHHHH
T ss_pred ------------hc-CCCCCCEEEEeechhccccCCcCHHHHHHHHHHhCCEEEEEcCCCCCCHHHHHHHHHHHH
Confidence 00 0124699999999999643 23333332 13578999999999999999988765
No 142
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=99.51 E-value=1.5e-14 Score=122.53 Aligned_cols=152 Identities=15% Similarity=0.173 Sum_probs=97.1
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcCCCCccccccccccccceEEEECCE--eecccCccccccccccCccccccccccccch
Q 018394 20 GRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDT--KIQLLDLPGIIEGASEGKGRGRQVIAVSKSS 97 (356)
Q Consensus 20 ~~v~LvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~--~i~~~D~pGl~~~~~~~~~~~~~~~~~~~~~ 97 (356)
..|+++|++|||||||+|.+++........|.++.+.....+.+++. .+.++||||...... .....++.+
T Consensus 7 ~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~-------~~~~~~~~~ 79 (170)
T 1z08_A 7 FKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIWDTAGQERFHA-------LGPIYYRDS 79 (170)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHCCCCSSCCCCCSCEEEEEEEESSSCEEEEEEEECCCC--------------CCSSTTC
T ss_pred eEEEEECcCCCCHHHHHHHHHcCCCCcCCCCccceEEEEEEEEECCEEEEEEEEECCCcHhhhh-------hHHHHhccC
Confidence 47999999999999999999987654445566666666667777765 466779999532111 112235677
Q ss_pred hHHHHHHhcCChHHHHHHHHHHHHHccCccccccCcccccceeccceeeeecCCCCCCCHHHHHHHHHHhcccCcEEEEc
Q 018394 98 DIVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNAEVLFR 177 (356)
Q Consensus 98 d~i~~v~d~~~~~~~~~~i~~~L~~~~i~l~~~~~~lS~g~~qr~~ial~~DEp~~~LD~~~~~~il~~l~~~~~~i~~t 177 (356)
|.+++++|...... .+.+..++ ..+.
T Consensus 80 d~~i~v~d~~~~~s-~~~~~~~~--------------------------------------------~~~~--------- 105 (170)
T 1z08_A 80 NGAILVYDITDEDS-FQKVKNWV--------------------------------------------KELR--------- 105 (170)
T ss_dssp SEEEEEEETTCHHH-HHHHHHHH--------------------------------------------HHHH---------
T ss_pred CEEEEEEECcCHHH-HHHHHHHH--------------------------------------------HHHH---------
Confidence 88888888766432 11122111 1110
Q ss_pred cCCCHHHHHHHHhccccccceEEEeecCCCCCh-----hhHHHHhc--CCCEEEeccccccchHHHHHHHHHHh
Q 018394 178 EDATVDDLIDVIEGNRKYMKCVYVYNKIDVIGI-----DDVDKLAR--QPNSVVISCNLKLNLDRLLARMWEEM 244 (356)
Q Consensus 178 hd~~~~~~~~~i~~~~~~~p~i~v~NK~Dl~~~-----~~~~~l~~--~~~~i~iSa~~~~~l~~L~~~i~~~l 244 (356)
... ....|+++|+||+|+... ++...+.. ..+++++||+++.|++++.+.+.+.+
T Consensus 106 ---------~~~---~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~ 167 (170)
T 1z08_A 106 ---------KML---GNEICLCIVGNKIDLEKERHVSIQEAESYAESVGAKHYHTSAKQNKGIEELFLDLCKRM 167 (170)
T ss_dssp ---------HHH---GGGSEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEEEBTTTTBSHHHHHHHHHHHH
T ss_pred ---------Hhc---CCCCeEEEEEECcccccccccCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHHHHH
Confidence 000 113589999999998642 22333332 23578999999999999999987654
No 143
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=99.51 E-value=3.8e-15 Score=138.01 Aligned_cols=148 Identities=13% Similarity=0.063 Sum_probs=73.9
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcCCCCccccccccccccceEEEECCEeecccCccccccccccCcccccccccc---ccc
Q 018394 20 GRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQVIAV---SKS 96 (356)
Q Consensus 20 ~~v~LvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~~D~pGl~~~~~~~~~~~~~~~~~---~~~ 96 (356)
..++|+|+||||||||+|+|+|...+ ..|.+.++|.++.. +. ....++...|.... +..
T Consensus 3 f~v~lvG~nGaGKSTLln~L~g~~~~-----------~~G~i~~~g~~i~~--~~-----~~~~i~~v~q~~~~~~~ltv 64 (270)
T 3sop_A 3 FNIMVVGQSGLGKSTLVNTLFKSQVS-----------RKASSWNREEKIPK--TV-----EIKAIGHVIEEGGVKMKLTV 64 (270)
T ss_dssp EEEEEEESSSSSHHHHHHHHHHHHC-----------------------CCC--CC-----SCCEEEESCC----CCEEEE
T ss_pred eEEEEECCCCCCHHHHHHHHhCCCCC-----------CCCccccCCcccCc--ce-----eeeeeEEEeecCCCcCCceE
Confidence 36899999999999999999998766 56777666654411 00 00011111111100 000
Q ss_pred hhHHHHHHhcCChHHHHHHHHHHHHHccCccccccCcccccceecccee------eeecCCCCCCCHHHHHHHHHHhccc
Q 018394 97 SDIVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGIS------FNSTLPLTHVDEKLCYQILHEYKIH 170 (356)
Q Consensus 97 ~d~i~~v~d~~~~~~~~~~i~~~L~~~~i~l~~~~~~lS~g~~qr~~ia------l~~DEp~~~LD~~~~~~il~~l~~~ 170 (356)
.|.+.+...... ....+.+.+.++. -..+..+..||+|++||+.+| +++|||+.+||+.. .++++.+..
T Consensus 65 ~d~~~~g~~~~~-~~~~~~i~~~~~~--~~~~~~~~~LS~G~~qrv~iaRal~~lllldep~~gL~~lD-~~~l~~L~~- 139 (270)
T 3sop_A 65 IDTPGFGDQINN-ENCWEPIEKYINE--QYEKFLKEEVNIARKKRIPDTRVHCCLYFISPTGHSLRPLD-LEFMKHLSK- 139 (270)
T ss_dssp ECCCC--CCSBC-TTCSHHHHHHHHH--HHHHHHHHHSCTTCCSSCCCCSCCEEEEEECCCSSSCCHHH-HHHHHHHHT-
T ss_pred Eechhhhhhccc-HHHHHHHHHHHHH--HHHhhhHHhcCcccchhhhhheeeeeeEEEecCCCcCCHHH-HHHHHHHHh-
Confidence 111111000000 0000111111110 012334568999999999887 88899999999876 333433321
Q ss_pred CcEEEEccCCCHHHHHHHHhccccccceEEEeecCCCCChhhHH
Q 018394 171 NAEVLFREDATVDDLIDVIEGNRKYMKCVYVYNKIDVIGIDDVD 214 (356)
Q Consensus 171 ~~~i~~thd~~~~~~~~~i~~~~~~~p~i~v~NK~Dl~~~~~~~ 214 (356)
..++|+|+||+|..+.+++.
T Consensus 140 ------------------------~~~vI~Vi~K~D~lt~~e~~ 159 (270)
T 3sop_A 140 ------------------------VVNIIPVIAKADTMTLEEKS 159 (270)
T ss_dssp ------------------------TSEEEEEETTGGGSCHHHHH
T ss_pred ------------------------cCcEEEEEeccccCCHHHHH
Confidence 15889999999998776554
No 144
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=99.51 E-value=2.3e-14 Score=124.66 Aligned_cols=151 Identities=23% Similarity=0.217 Sum_probs=93.4
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHcCCCCccccccccccccceEEEECC---------------------------------
Q 018394 19 HGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYND--------------------------------- 65 (356)
Q Consensus 19 g~~v~LvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g--------------------------------- 65 (356)
...|+|+|++|||||||+|+|++........|.++.+.....+.+++
T Consensus 7 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (208)
T 3clv_A 7 SYKTVLLGESSVGKSSIVLRLTKDTFHENTNTTIGASFCTYVVNLNDINIKNNSNNEKNNNINSINDDNNVIITNQHNNY 86 (208)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSCEEEEEEEETTC-------------------------------CC
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCcCCCCcCccccceeEEEEEEecCccccccccccccccccccccccccccccccccc
Confidence 46899999999999999999999864433334333444444555554
Q ss_pred ------EeecccCccccccccccCccccccccccccchhHHHHHHhcCChHHHHHHHHHHHHHccCccccccCcccccce
Q 018394 66 ------TKIQLLDLPGIIEGASEGKGRGRQVIAVSKSSDIVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKK 139 (356)
Q Consensus 66 ------~~i~~~D~pGl~~~~~~~~~~~~~~~~~~~~~d~i~~v~d~~~~~~~~~~i~~~L~~~~i~l~~~~~~lS~g~~ 139 (356)
..+.++||||..... ......++.+|++++|+|...+... +.+..
T Consensus 87 ~~~~~~~~~~i~Dt~G~~~~~-------~~~~~~~~~~d~~i~v~D~~~~~s~-~~~~~--------------------- 137 (208)
T 3clv_A 87 NENLCNIKFDIWDTAGQERYA-------SIVPLYYRGATCAIVVFDISNSNTL-DRAKT--------------------- 137 (208)
T ss_dssp CTTTCEEEEEEEECTTGGGCT-------TTHHHHHTTCSEEEEEEETTCHHHH-HHHHH---------------------
T ss_pred cCccceeEEEEEECCCcHHHH-------HHHHHHhcCCCEEEEEEECCCHHHH-HHHHH---------------------
Confidence 677889999853211 1112234667777888877664321 11111
Q ss_pred eccceeeeecCCCCCCCHHHHHHHHHHhcccCcEEEEccCCCHHHHHHHHhccccccceEEEeecCCCCC----hhhHHH
Q 018394 140 KTGGISFNSTLPLTHVDEKLCYQILHEYKIHNAEVLFREDATVDDLIDVIEGNRKYMKCVYVYNKIDVIG----IDDVDK 215 (356)
Q Consensus 140 qr~~ial~~DEp~~~LD~~~~~~il~~l~~~~~~i~~thd~~~~~~~~~i~~~~~~~p~i~v~NK~Dl~~----~~~~~~ 215 (356)
++..+. .. ...|+++|+||+|+.. .++...
T Consensus 138 -----------------------~~~~i~----------------------~~-~~~piilv~NK~D~~~~~~~~~~~~~ 171 (208)
T 3clv_A 138 -----------------------WVNQLK----------------------IS-SNYIIILVANKIDKNKFQVDILEVQK 171 (208)
T ss_dssp -----------------------HHHHHH----------------------HH-SCCEEEEEEECTTCC-CCSCHHHHHH
T ss_pred -----------------------HHHHHH----------------------hh-CCCcEEEEEECCCcccccCCHHHHHH
Confidence 111111 00 0159999999999421 123333
Q ss_pred Hhc--CCCEEEeccccccchHHHHHHHHHHh
Q 018394 216 LAR--QPNSVVISCNLKLNLDRLLARMWEEM 244 (356)
Q Consensus 216 l~~--~~~~i~iSa~~~~~l~~L~~~i~~~l 244 (356)
+.. ..+++++||+++.|++++.+.+.+.+
T Consensus 172 ~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~ 202 (208)
T 3clv_A 172 YAQDNNLLFIQTSAKTGTNIKNIFYMLAEEI 202 (208)
T ss_dssp HHHHTTCEEEEECTTTCTTHHHHHHHHHHHH
T ss_pred HHHHcCCcEEEEecCCCCCHHHHHHHHHHHH
Confidence 322 23578999999999999998887654
No 145
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.51 E-value=1.3e-14 Score=122.55 Aligned_cols=152 Identities=18% Similarity=0.192 Sum_probs=96.9
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcCCCCccccccccccccceEEEECCE--eecccCccccccccccCccccccccccccch
Q 018394 20 GRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDT--KIQLLDLPGIIEGASEGKGRGRQVIAVSKSS 97 (356)
Q Consensus 20 ~~v~LvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~--~i~~~D~pGl~~~~~~~~~~~~~~~~~~~~~ 97 (356)
..|+++|++|||||||+|.|++........|.++.+.....+.+++. .+.++|+||..... ......++.+
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~-------~~~~~~~~~~ 76 (170)
T 1ek0_A 4 IKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQERFA-------SLAPXYYRNA 76 (170)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGG-------GGHHHHHTTC
T ss_pred EEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCChhhh-------hhhhhhhccC
Confidence 47999999999999999999987644344455555555666777765 67889999953211 1112234667
Q ss_pred hHHHHHHhcCChHHHHHHHHHHHHHccCccccccCcccccceeccceeeeecCCCCCCCHHHHHHHHHHhcccCcEEEEc
Q 018394 98 DIVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNAEVLFR 177 (356)
Q Consensus 98 d~i~~v~d~~~~~~~~~~i~~~L~~~~i~l~~~~~~lS~g~~qr~~ial~~DEp~~~LD~~~~~~il~~l~~~~~~i~~t 177 (356)
|++++++|...+... +.+..++ ..+.
T Consensus 77 d~~i~v~d~~~~~s~-~~~~~~~--------------------------------------------~~~~--------- 102 (170)
T 1ek0_A 77 QAALVVYDVTKPQSF-IKARHWV--------------------------------------------KELH--------- 102 (170)
T ss_dssp SEEEEEEETTCHHHH-HHHHHHH--------------------------------------------HHHH---------
T ss_pred cEEEEEEecCChHHH-HHHHHHH--------------------------------------------HHHH---------
Confidence 777788777664321 1111111 1110
Q ss_pred cCCCHHHHHHHHhccccccceEEEeecCCCCCh--------hhHHHHhc--CCCEEEeccccccchHHHHHHHHHHh
Q 018394 178 EDATVDDLIDVIEGNRKYMKCVYVYNKIDVIGI--------DDVDKLAR--QPNSVVISCNLKLNLDRLLARMWEEM 244 (356)
Q Consensus 178 hd~~~~~~~~~i~~~~~~~p~i~v~NK~Dl~~~--------~~~~~l~~--~~~~i~iSa~~~~~l~~L~~~i~~~l 244 (356)
.. .....|+++|+||+|+... ++...+.. ..+++++||+++.|++++.+.+.+.+
T Consensus 103 ---------~~---~~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i 167 (170)
T 1ek0_A 103 ---------EQ---ASKDIIIALVGNKIDXLQEGGERKVAREEGEKLAEEKGLLFFETSAKTGENVNDVFLGIGEKI 167 (170)
T ss_dssp ---------HH---SCTTCEEEEEEECGGGGGSSCCCCSCHHHHHHHHHHHTCEEEECCTTTCTTHHHHHHHHHTTS
T ss_pred ---------Hh---cCCCCcEEEEEECCCccccccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHH
Confidence 00 0113589999999998643 12222221 23588999999999999999887654
No 146
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=99.51 E-value=3.1e-14 Score=121.99 Aligned_cols=153 Identities=15% Similarity=0.160 Sum_probs=98.0
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcCCCCccccccccccccceEEEECCE--eecccCccccccccccCccccccccccccch
Q 018394 20 GRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDT--KIQLLDLPGIIEGASEGKGRGRQVIAVSKSS 97 (356)
Q Consensus 20 ~~v~LvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~--~i~~~D~pGl~~~~~~~~~~~~~~~~~~~~~ 97 (356)
..|+++|++|||||||+|.|++........|..+.+.....+.+++. .+.++|+||..... ......++.+
T Consensus 13 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~-------~~~~~~~~~~ 85 (181)
T 2efe_B 13 AKLVLLGDVGAGKSSLVLRFVKDQFVEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYH-------SLAPMYYRGA 85 (181)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHCCCTTTSCCCSCCSEEEEEEEETTEEEEEEEEECCCSGGGG-------GGTHHHHTTC
T ss_pred eEEEEECcCCCCHHHHHHHHHcCCCCCcCCCCceeEEEEEEEEECCEEEEEEEEeCCCChhhh-------hhhHHHhccC
Confidence 57999999999999999999987654344454454555556667654 67889999953211 1112234667
Q ss_pred hHHHHHHhcCChHHHHHHHHHHHHHccCccccccCcccccceeccceeeeecCCCCCCCHHHHHHHHHHhcccCcEEEEc
Q 018394 98 DIVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNAEVLFR 177 (356)
Q Consensus 98 d~i~~v~d~~~~~~~~~~i~~~L~~~~i~l~~~~~~lS~g~~qr~~ial~~DEp~~~LD~~~~~~il~~l~~~~~~i~~t 177 (356)
|++++|+|...+.. .+.+..++ ..+..
T Consensus 86 d~~i~v~d~~~~~s-~~~~~~~~--------------------------------------------~~~~~-------- 112 (181)
T 2efe_B 86 AAAIIVFDVTNQAS-FERAKKWV--------------------------------------------QELQA-------- 112 (181)
T ss_dssp SEEEEEEETTCHHH-HHHHHHHH--------------------------------------------HHHHH--------
T ss_pred CEEEEEEECCCHHH-HHHHHHHH--------------------------------------------HHHHH--------
Confidence 88888887765432 11111111 11110
Q ss_pred cCCCHHHHHHHHhccccccceEEEeecCCCCCh-----hhHHHHhc--CCCEEEeccccccchHHHHHHHHHHhC
Q 018394 178 EDATVDDLIDVIEGNRKYMKCVYVYNKIDVIGI-----DDVDKLAR--QPNSVVISCNLKLNLDRLLARMWEEMG 245 (356)
Q Consensus 178 hd~~~~~~~~~i~~~~~~~p~i~v~NK~Dl~~~-----~~~~~l~~--~~~~i~iSa~~~~~l~~L~~~i~~~l~ 245 (356)
......|+++|+||+|+... ++...+.. ..+++++||+++.|++++.+.|.+.+.
T Consensus 113 -------------~~~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~~~ 174 (181)
T 2efe_B 113 -------------QGNPNMVMALAGNKSDLLDARKVTAEDAQTYAQENGLFFMETSAKTATNVKEIFYEIARRLP 174 (181)
T ss_dssp -------------HSCTTCEEEEEEECTTCTTTCCSCHHHHHHHHHHTTCEEEECCSSSCTTHHHHHHHHHHTCC
T ss_pred -------------hcCCCCcEEEEEECCcccccccCCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHHH
Confidence 00113589999999999643 22333332 234889999999999999999987664
No 147
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=99.51 E-value=1e-14 Score=126.54 Aligned_cols=151 Identities=19% Similarity=0.190 Sum_probs=97.7
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHcCCCCccccccccccccceEEEECCEeecccCccccccccccCccccccccccccchh
Q 018394 19 HGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQVIAVSKSSD 98 (356)
Q Consensus 19 g~~v~LvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~~D~pGl~~~~~~~~~~~~~~~~~~~~~d 98 (356)
...|+++|++|||||||+|.+++.... ...| |.......+.+++..+.++||||..... ......++.+|
T Consensus 22 ~~~i~v~G~~~~GKssli~~l~~~~~~-~~~~--t~~~~~~~~~~~~~~~~~~Dt~G~~~~~-------~~~~~~~~~~d 91 (189)
T 2x77_A 22 KIRVLMLGLDNAGKTSILYRLHLGDVV-TTVP--TVGVNLETLQYKNISFEVWDLGGQTGVR-------PYWRCYFSDTD 91 (189)
T ss_dssp CEEEEEEEETTSSHHHHHHHTCCSCCE-EECS--STTCCEEEEEETTEEEEEEEECCSSSSC-------CCCSSSSTTCC
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCC-CcCC--CCceEEEEEEECCEEEEEEECCCCHhHH-------HHHHHHhhcCC
Confidence 468999999999999999999865432 2223 5556667788899999999999963211 11122356788
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHHccCccccccCcccccceeccceeeeecCCCCCCCHHHHHHHHHHhcccCcEEEEcc
Q 018394 99 IVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNAEVLFRE 178 (356)
Q Consensus 99 ~i~~v~d~~~~~~~~~~i~~~L~~~~i~l~~~~~~lS~g~~qr~~ial~~DEp~~~LD~~~~~~il~~l~~~~~~i~~th 178 (356)
++++|+|...+..- +.+..++.. ++..
T Consensus 92 ~ii~v~d~~~~~s~-~~~~~~~~~----------------------------------------~~~~------------ 118 (189)
T 2x77_A 92 AVIYVVDSTDRDRM-GVAKHELYA----------------------------------------LLDE------------ 118 (189)
T ss_dssp EEEEEEETTCCTTH-HHHHHHHHH----------------------------------------HHTC------------
T ss_pred EEEEEEeCCCHHHH-HHHHHHHHH----------------------------------------HHhh------------
Confidence 88888887654221 111111111 0000
Q ss_pred CCCHHHHHHHHhccccccceEEEeecCCCCCh---hhHHHHhc-----C--CCEEEeccccccchHHHHHHHHHHh
Q 018394 179 DATVDDLIDVIEGNRKYMKCVYVYNKIDVIGI---DDVDKLAR-----Q--PNSVVISCNLKLNLDRLLARMWEEM 244 (356)
Q Consensus 179 d~~~~~~~~~i~~~~~~~p~i~v~NK~Dl~~~---~~~~~l~~-----~--~~~i~iSa~~~~~l~~L~~~i~~~l 244 (356)
......|+++|+||+|+... +++..... . .+++++||+++.|++++.+.+.+.+
T Consensus 119 ------------~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i 182 (189)
T 2x77_A 119 ------------DELRKSLLLIFANKQDLPDAASEAEIAEQLGVSSIMNRTWTIVKSSSKTGDGLVEGMDWLVERL 182 (189)
T ss_dssp ------------STTTTCEEEEEEECTTSTTCCCHHHHHHHTTGGGCCSSCEEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred ------------hhcCCCeEEEEEECCCCcCCCCHHHHHHHhChhhccCCceEEEEccCCCccCHHHHHHHHHHHH
Confidence 00123699999999999754 22222111 1 1378999999999999999988765
No 148
>1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*
Probab=99.51 E-value=1.7e-14 Score=144.27 Aligned_cols=149 Identities=20% Similarity=0.282 Sum_probs=95.1
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcCC-------CCccccccccccccceEEEECCEeecccCccccccccccCccccccccc
Q 018394 20 GRVALIGFPSVGKSTLLTLLTGTH-------SEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQVIA 92 (356)
Q Consensus 20 ~~v~LvG~~gaGKSTLln~L~g~~-------~~vs~~p~TT~~~~~G~i~~~g~~i~~~D~pGl~~~~~~~~~~~~~~~~ 92 (356)
..|+++|.+|+|||||+++|++.. .+....+|+|++.....+.+++..+.++||||.... ......
T Consensus 20 ~~I~iiG~~d~GKSTLi~~L~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~i~iiDtPGh~~~-------~~~~~~ 92 (482)
T 1wb1_A 20 INLGIFGHIDHGKTTLSKVLTEIASTSAHDKLPESQKRGITIDIGFSAFKLENYRITLVDAPGHADL-------IRAVVS 92 (482)
T ss_dssp EEEEEEECTTSSHHHHHHHHHTTC--------------------CCCEEEETTEEEEECCCSSHHHH-------HHHHHH
T ss_pred CEEEEECCCCChHHHHHHHHHCCCcccccccccccccCccEEecceEEEEECCEEEEEEECCChHHH-------HHHHHH
Confidence 589999999999999999999976 344567899999998899999999999999996321 122333
Q ss_pred cccchhHHHHHHhcCChHHHHHHHHHHHHHccCccccccCcccccceeccceeeeecCCCCCCCHHHHHHHHHHhcccCc
Q 018394 93 VSKSSDIVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNA 172 (356)
Q Consensus 93 ~~~~~d~i~~v~d~~~~~~~~~~i~~~L~~~~i~l~~~~~~lS~g~~qr~~ial~~DEp~~~LD~~~~~~il~~l~~~~~ 172 (356)
.+..+|++++++|+........ .+.+ .+++
T Consensus 93 ~~~~aD~~ilVvda~~g~~~qt--~e~l-----------------------------------------~~~~------- 122 (482)
T 1wb1_A 93 AADIIDLALIVVDAKEGPKTQT--GEHM-----------------------------------------LILD------- 122 (482)
T ss_dssp HTTSCCEEEEEEETTTCSCHHH--HHHH-----------------------------------------HHHH-------
T ss_pred HHhhCCEEEEEEecCCCccHHH--HHHH-----------------------------------------HHHH-------
Confidence 4566787777777754211100 0000 0000
Q ss_pred EEEEccCCCHHHHHHHHhccccccceEEEeecCCCCChhhHH-------HHh-c-----CCCEEEeccccccchHHHHHH
Q 018394 173 EVLFREDATVDDLIDVIEGNRKYMKCVYVYNKIDVIGIDDVD-------KLA-R-----QPNSVVISCNLKLNLDRLLAR 239 (356)
Q Consensus 173 ~i~~thd~~~~~~~~~i~~~~~~~p~i~v~NK~Dl~~~~~~~-------~l~-~-----~~~~i~iSa~~~~~l~~L~~~ 239 (356)
....|.++|+||+|+...+..+ .+. . ..+++++||++|.|+++|.+.
T Consensus 123 --------------------~~~ip~IvviNK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~ii~vSA~~g~gI~~L~~~ 182 (482)
T 1wb1_A 123 --------------------HFNIPIIVVITKSDNAGTEEIKRTEMIMKSILQSTHNLKNSSIIPISAKTGFGVDELKNL 182 (482)
T ss_dssp --------------------HTTCCBCEEEECTTSSCHHHHHHHHHHHHHHHHHSSSGGGCCEEECCTTTCTTHHHHHHH
T ss_pred --------------------HcCCCEEEEEECCCcccchhHHHHHHHHHHHHhhhcccccceEEEEECcCCCCHHHHHHH
Confidence 0124889999999998653322 111 1 246899999999999999999
Q ss_pred HHHHhC
Q 018394 240 MWEEMG 245 (356)
Q Consensus 240 i~~~l~ 245 (356)
|.+.+.
T Consensus 183 L~~~i~ 188 (482)
T 1wb1_A 183 IITTLN 188 (482)
T ss_dssp HHHHHH
T ss_pred HHHhhc
Confidence 988654
No 149
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=99.51 E-value=1.8e-14 Score=126.23 Aligned_cols=152 Identities=20% Similarity=0.197 Sum_probs=97.6
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcCCCCccccccccccccceEEEECCE--eecccCccccccccccCccccccccccccch
Q 018394 20 GRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDT--KIQLLDLPGIIEGASEGKGRGRQVIAVSKSS 97 (356)
Q Consensus 20 ~~v~LvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~--~i~~~D~pGl~~~~~~~~~~~~~~~~~~~~~ 97 (356)
..|+|+|++|||||||+|.|++.. ...++++||.+.....+.+++. .+.++||||..... ......++.+
T Consensus 15 ~ki~v~G~~~~GKSsli~~l~~~~-~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~-------~~~~~~~~~~ 86 (206)
T 2bov_A 15 HKVIMVGSGGVGKSALTLQFMYDE-FVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDYA-------AIRDNYFRSG 86 (206)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSC-CCTTCCTTCCEEEEEEEEETTEEEEEEEEECCCTTCCH-------HHHHHHHHHC
T ss_pred EEEEEECCCCCCHHHHHHHHHhCC-CCCCCCCccceEEEEEEEECCEEEEEEEEcCCChhhhH-------HHHHHHHhhC
Confidence 589999999999999999999876 3567888888887788888885 67889999953211 0011123445
Q ss_pred hHHHHHHhcCChHHHHHHHHHHHHHccCccccccCcccccceeccceeeeecCCCCCCCHHHHHHHHHHhcccCcEEEEc
Q 018394 98 DIVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNAEVLFR 177 (356)
Q Consensus 98 d~i~~v~d~~~~~~~~~~i~~~L~~~~i~l~~~~~~lS~g~~qr~~ial~~DEp~~~LD~~~~~~il~~l~~~~~~i~~t 177 (356)
|.+++++|...... .+.+..++ ..+.
T Consensus 87 ~~~i~v~d~~~~~s-~~~~~~~~--------------------------------------------~~i~--------- 112 (206)
T 2bov_A 87 EGFLCVFSITEMES-FAATADFR--------------------------------------------EQIL--------- 112 (206)
T ss_dssp SEEEEEEETTCHHH-HHHHHHHH--------------------------------------------HHHH---------
T ss_pred CEEEEEEECCCHHH-HHHHHHHH--------------------------------------------HHHH---------
Confidence 55566666554321 11111111 1110
Q ss_pred cCCCHHHHHHHHhccccccceEEEeecCCCCCh-----hhHHHHhc--CCCEEEeccccccchHHHHHHHHHHh
Q 018394 178 EDATVDDLIDVIEGNRKYMKCVYVYNKIDVIGI-----DDVDKLAR--QPNSVVISCNLKLNLDRLLARMWEEM 244 (356)
Q Consensus 178 hd~~~~~~~~~i~~~~~~~p~i~v~NK~Dl~~~-----~~~~~l~~--~~~~i~iSa~~~~~l~~L~~~i~~~l 244 (356)
... .....|+++|+||+|+... ++...+.. ..+++++||++|.|++++.+.|.+.+
T Consensus 113 ---------~~~--~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~i 175 (206)
T 2bov_A 113 ---------RVK--EDENVPFLLVGNKSDLEDKRQVSVEEAKNRAEQWNVNYVETSAKTRANVDKVFFDLMREI 175 (206)
T ss_dssp ---------HHT--TCSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEEECTTTCTTHHHHHHHHHHHH
T ss_pred ---------Hhc--CCCCCCEEEEEeccCccccccccHHHHHHHHHHhCCeEEEEeCCCCCCHHHHHHHHHHHH
Confidence 000 0114699999999998643 22222321 23588999999999999988887655
No 150
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=99.50 E-value=2.3e-14 Score=124.69 Aligned_cols=152 Identities=19% Similarity=0.173 Sum_probs=96.3
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcCCCCccccccccccccceEEEECCE--eecccCccccccccccCccccccccccccch
Q 018394 20 GRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDT--KIQLLDLPGIIEGASEGKGRGRQVIAVSKSS 97 (356)
Q Consensus 20 ~~v~LvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~--~i~~~D~pGl~~~~~~~~~~~~~~~~~~~~~ 97 (356)
..|+|+|++|||||||+|.|++........|.++.+.....+.+++. .+.++||||..... . .....++.+
T Consensus 22 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~----~---~~~~~~~~~ 94 (191)
T 2a5j_A 22 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQESFR----S---ITRSYYRGA 94 (191)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHSCCCC-----CCSSEEEEEEEETTEEEEEEEECCTTGGGTS----C---CCHHHHTTC
T ss_pred eEEEEECcCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEECCCchhhh----h---hHHHHhccC
Confidence 47999999999999999999987755445566666666777888874 67889999953211 1 112234667
Q ss_pred hHHHHHHhcCChHHHHHHHHHHHHHccCccccccCcccccceeccceeeeecCCCCCCCHHHHHHHHHHhcccCcEEEEc
Q 018394 98 DIVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNAEVLFR 177 (356)
Q Consensus 98 d~i~~v~d~~~~~~~~~~i~~~L~~~~i~l~~~~~~lS~g~~qr~~ial~~DEp~~~LD~~~~~~il~~l~~~~~~i~~t 177 (356)
|++++|+|....... +.+..+ +..+..
T Consensus 95 d~ii~v~d~~~~~s~-~~~~~~--------------------------------------------l~~i~~-------- 121 (191)
T 2a5j_A 95 AGALLVYDITRRETF-NHLTSW--------------------------------------------LEDARQ-------- 121 (191)
T ss_dssp SEEEEEEETTCHHHH-HTHHHH--------------------------------------------HHHHHH--------
T ss_pred CEEEEEEECCCHHHH-HHHHHH--------------------------------------------HHHHHH--------
Confidence 888888887654321 111111 111110
Q ss_pred cCCCHHHHHHHHhccccccceEEEeecCCCCCh-----hhHHHHhc--CCCEEEeccccccchHHHHHHHHHHh
Q 018394 178 EDATVDDLIDVIEGNRKYMKCVYVYNKIDVIGI-----DDVDKLAR--QPNSVVISCNLKLNLDRLLARMWEEM 244 (356)
Q Consensus 178 hd~~~~~~~~~i~~~~~~~p~i~v~NK~Dl~~~-----~~~~~l~~--~~~~i~iSa~~~~~l~~L~~~i~~~l 244 (356)
. .....|+++|+||+|+... ++...+.. ...++++||+++.|++++.+.+.+.+
T Consensus 122 -----------~--~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i 182 (191)
T 2a5j_A 122 -----------H--SSSNMVIMLIGNKSDLESRRDVKREEGEAFAREHGLIFMETSAKTACNVEEAFINTAKEI 182 (191)
T ss_dssp -----------H--SCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEEECTTTCTTHHHHHHHHHHHH
T ss_pred -----------h--cCCCCCEEEEEECcccCCccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHH
Confidence 0 0113589999999998642 22333321 23578999999999999988887654
No 151
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=99.50 E-value=1.2e-14 Score=126.80 Aligned_cols=152 Identities=19% Similarity=0.198 Sum_probs=94.0
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcCCCCccccccccccccceEEEECCE--eecccCccccccccccCccccccccccccch
Q 018394 20 GRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDT--KIQLLDLPGIIEGASEGKGRGRQVIAVSKSS 97 (356)
Q Consensus 20 ~~v~LvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~--~i~~~D~pGl~~~~~~~~~~~~~~~~~~~~~ 97 (356)
..|+|+|.+|||||||+|.|++........|.++.+.....+.+++. .+.++||||..... ......++.+
T Consensus 27 ~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~-------~~~~~~~~~~ 99 (192)
T 2il1_A 27 LQVIIIGSRGVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVELRGKKIRLQIWDTAGQERFN-------SITSAYYRSA 99 (192)
T ss_dssp EEEEEECSTTSSHHHHHHHHCC--------CCTTEEEEEEEEEETTEEEEEEEEEECCSGGGH-------HHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCcCCCCccceeEEEEEEEECCeEEEEEEEeCCCcHHHH-------HHHHHHhcCC
Confidence 47999999999999999999987655445566677777778888874 67889999953211 1111234556
Q ss_pred hHHHHHHhcCChHHHHHHHHHHHHHccCccccccCcccccceeccceeeeecCCCCCCCHHHHHHHHHHhcccCcEEEEc
Q 018394 98 DIVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNAEVLFR 177 (356)
Q Consensus 98 d~i~~v~d~~~~~~~~~~i~~~L~~~~i~l~~~~~~lS~g~~qr~~ial~~DEp~~~LD~~~~~~il~~l~~~~~~i~~t 177 (356)
|++++|+|....... +.+..+ +..+.
T Consensus 100 d~iilV~D~~~~~s~-~~~~~~--------------------------------------------~~~i~--------- 125 (192)
T 2il1_A 100 KGIILVYDITKKETF-DDLPKW--------------------------------------------MKMID--------- 125 (192)
T ss_dssp SEEEEEEETTCHHHH-HTHHHH--------------------------------------------HHHHH---------
T ss_pred CEEEEEEECcCHHHH-HHHHHH--------------------------------------------HHHHH---------
Confidence 777777776654221 111111 11110
Q ss_pred cCCCHHHHHHHHhccccccceEEEeecCCCCCh-----hhHHHHhc---CCCEEEeccccccchHHHHHHHHHHh
Q 018394 178 EDATVDDLIDVIEGNRKYMKCVYVYNKIDVIGI-----DDVDKLAR---QPNSVVISCNLKLNLDRLLARMWEEM 244 (356)
Q Consensus 178 hd~~~~~~~~~i~~~~~~~p~i~v~NK~Dl~~~-----~~~~~l~~---~~~~i~iSa~~~~~l~~L~~~i~~~l 244 (356)
.. .....|+++|+||+|+... ++...+.+ ...++++||++|.|++++.+.+.+.+
T Consensus 126 ----------~~--~~~~~piilV~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~~~l~~~i 188 (192)
T 2il1_A 126 ----------KY--ASEDAELLLVGNKLDCETDREITRQQGEKFAQQITGMRFCEASAKDNFNVDEIFLKLVDDI 188 (192)
T ss_dssp ----------HH--SCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHTSTTCEEEECBTTTTBSHHHHHHHHHHHH
T ss_pred ----------Hh--cCCCCcEEEEEECcccccccccCHHHHHHHHHhcCCCeEEEEeCCCCCCHHHHHHHHHHHH
Confidence 00 0113699999999998643 22333432 23478999999999999999887654
No 152
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=99.50 E-value=1.6e-14 Score=126.92 Aligned_cols=152 Identities=16% Similarity=0.130 Sum_probs=92.8
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcCCCCccccccccccccceEEEECC--EeecccCccccccccccCccccccccccccch
Q 018394 20 GRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYND--TKIQLLDLPGIIEGASEGKGRGRQVIAVSKSS 97 (356)
Q Consensus 20 ~~v~LvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g--~~i~~~D~pGl~~~~~~~~~~~~~~~~~~~~~ 97 (356)
..|+|+|++|||||||+|.|++........|.++.+.....+.+++ ..+.++||||..... ......++.+
T Consensus 26 ~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~-------~~~~~~~~~~ 98 (200)
T 2o52_A 26 FKFLVIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNVGGKTVKLQIWDTAGQERFR-------SVTRSYYRGA 98 (200)
T ss_dssp EEEEEEESTTSSHHHHHHHHHC------------CCEEEEEEEETTEEEEEEEECCTTHHHHS-------CCCHHHHTTC
T ss_pred eEEEEECcCCCCHHHHHHHHHhCCCCccCCCcccceeEEEEEEECCeeeEEEEEcCCCcHhHH-------HHHHHHhccC
Confidence 5899999999999999999998775555567777777777888888 578899999963211 1112234667
Q ss_pred hHHHHHHhcCChHHHHHHHHHHHHHccCccccccCcccccceeccceeeeecCCCCCCCHHHHHHHHHHhcccCcEEEEc
Q 018394 98 DIVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNAEVLFR 177 (356)
Q Consensus 98 d~i~~v~d~~~~~~~~~~i~~~L~~~~i~l~~~~~~lS~g~~qr~~ial~~DEp~~~LD~~~~~~il~~l~~~~~~i~~t 177 (356)
|++++|+|...+... +.+..++ ..+..
T Consensus 99 d~~i~v~d~~~~~s~-~~~~~~~--------------------------------------------~~~~~-------- 125 (200)
T 2o52_A 99 AGALLVYDITSRETY-NSLAAWL--------------------------------------------TDART-------- 125 (200)
T ss_dssp SEEEEEEETTCHHHH-HTHHHHH--------------------------------------------HHHHH--------
T ss_pred CEEEEEEECcCHHHH-HHHHHHH--------------------------------------------HHHHH--------
Confidence 888888887664321 1111111 11100
Q ss_pred cCCCHHHHHHHHhccccccceEEEeecCCCCCh-----hhHHHHhc--CCCEEEeccccccchHHHHHHHHHHh
Q 018394 178 EDATVDDLIDVIEGNRKYMKCVYVYNKIDVIGI-----DDVDKLAR--QPNSVVISCNLKLNLDRLLARMWEEM 244 (356)
Q Consensus 178 hd~~~~~~~~~i~~~~~~~p~i~v~NK~Dl~~~-----~~~~~l~~--~~~~i~iSa~~~~~l~~L~~~i~~~l 244 (356)
. .....|+++|+||+|+... .+...+.. ...++++||++|.|++++.+.+.+.+
T Consensus 126 -----------~--~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~~~l~~~i 186 (200)
T 2o52_A 126 -----------L--ASPNIVVILCGNKKDLDPEREVTFLEASRFAQENELMFLETSALTGENVEEAFLKCARTI 186 (200)
T ss_dssp -----------H--TCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEEECTTTCTTHHHHHHHHHHHH
T ss_pred -----------h--cCCCCcEEEEEECCCcccccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHH
Confidence 0 0123589999999998632 22222322 23478999999999999988887654
No 153
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=99.50 E-value=6.6e-15 Score=155.03 Aligned_cols=79 Identities=15% Similarity=0.098 Sum_probs=61.7
Q ss_pred HHHHHHHHHccC---ccccccCcccccceecccee------------eeecCCCCCCCHHHHHHH---HHHhc-ccCcEE
Q 018394 114 QILTKELEAVGL---RLNKRPPQIYFKKKKTGGIS------------FNSTLPLTHVDEKLCYQI---LHEYK-IHNAEV 174 (356)
Q Consensus 114 ~~i~~~L~~~~i---~l~~~~~~lS~g~~qr~~ia------------l~~DEp~~~LD~~~~~~i---l~~l~-~~~~~i 174 (356)
..+.+.|+.+++ .+++++..||+|++||+.|| +++||||++||+.....+ |+.+. .+.++|
T Consensus 708 ~~~~~~L~~~gL~~~~l~~~~~~LSGGekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~G~tVI 787 (842)
T 2vf7_A 708 FRALDTLREVGLGYLRLGQPATELSGGEAQRIKLATELRRSGRGGTVYVLDEPTTGLHPADVERLQRQLVKLVDAGNTVI 787 (842)
T ss_dssp HHHHHHHHHTTCTTSBTTCCGGGCCHHHHHHHHHHHTTSSCCSSCEEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEE
T ss_pred HHHHHHHHHcCCCcccccCCcccCCHHHHHHHHHHHHHHhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEE
Confidence 457788999999 35889999999999999887 789999999999886555 44443 356999
Q ss_pred EEccCCCHHHHHHHHhccccccceEEEe
Q 018394 175 LFREDATVDDLIDVIEGNRKYMKCVYVY 202 (356)
Q Consensus 175 ~~thd~~~~~~~~~i~~~~~~~p~i~v~ 202 (356)
++|||.++.. .+..++++
T Consensus 788 visHdl~~i~----------~aDrii~L 805 (842)
T 2vf7_A 788 AVEHKMQVVA----------ASDWVLDI 805 (842)
T ss_dssp EECCCHHHHT----------TCSEEEEE
T ss_pred EEcCCHHHHH----------hCCEEEEE
Confidence 9999965432 23667776
No 154
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=99.50 E-value=3.6e-14 Score=126.86 Aligned_cols=153 Identities=21% Similarity=0.160 Sum_probs=96.5
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcCCCCccccccccccccceEEEECC--EeecccCccccccccccCccccccccccccch
Q 018394 20 GRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYND--TKIQLLDLPGIIEGASEGKGRGRQVIAVSKSS 97 (356)
Q Consensus 20 ~~v~LvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g--~~i~~~D~pGl~~~~~~~~~~~~~~~~~~~~~ 97 (356)
..|+|+|++|||||||+|.|++........|.++.+.....+.+++ ..+.++||||..... ......++.+
T Consensus 14 ~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~-------~~~~~~~~~~ 86 (223)
T 3cpj_B 14 FKIVLIGDSGVGKSNLLSRFTKNEFNMDSKSTIGVEFATRTLEIEGKRIKAQIWDTAGQERYR-------AITSAYYRGA 86 (223)
T ss_dssp EEEEEESCTTSSHHHHHHHHHHCCCCC------CCSEEEEEEEETTEEEEEEEECCTTTTTTT-------CCCGGGTTTC
T ss_pred eEEEEECcCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEECCCccchh-------hhHHHHhccC
Confidence 5899999999999999999998875555556667777777788888 477899999953211 1112335678
Q ss_pred hHHHHHHhcCChHHHHHHHHHHHHHccCccccccCcccccceeccceeeeecCCCCCCCHHHHHHHHHHhcccCcEEEEc
Q 018394 98 DIVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNAEVLFR 177 (356)
Q Consensus 98 d~i~~v~d~~~~~~~~~~i~~~L~~~~i~l~~~~~~lS~g~~qr~~ial~~DEp~~~LD~~~~~~il~~l~~~~~~i~~t 177 (356)
|++++|+|...+... +.+..++ ..+..
T Consensus 87 d~vilV~D~~~~~s~-~~~~~~l--------------------------------------------~~i~~-------- 113 (223)
T 3cpj_B 87 VGALIVYDISKSSSY-ENCNHWL--------------------------------------------SELRE-------- 113 (223)
T ss_dssp CEEEEEEC-CCHHHH-HHHHHHH--------------------------------------------HHHHH--------
T ss_pred CEEEEEEeCCCHHHH-HHHHHHH--------------------------------------------HHHHH--------
Confidence 888888887664321 1122211 11110
Q ss_pred cCCCHHHHHHHHhccccccceEEEeecCCCCCh-----hhHHHHhc--CCCEEEeccccccchHHHHHHHHHHhC
Q 018394 178 EDATVDDLIDVIEGNRKYMKCVYVYNKIDVIGI-----DDVDKLAR--QPNSVVISCNLKLNLDRLLARMWEEMG 245 (356)
Q Consensus 178 hd~~~~~~~~~i~~~~~~~p~i~v~NK~Dl~~~-----~~~~~l~~--~~~~i~iSa~~~~~l~~L~~~i~~~l~ 245 (356)
. .....|+++|+||+|+... ++...+.. ...++++||+++.|++++.+.+.+.+.
T Consensus 114 -----------~--~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~ 175 (223)
T 3cpj_B 114 -----------N--ADDNVAVGLIGNKSDLAHLRAVPTEESKTFAQENQLLFTETSALNSENVDKAFEELINTIY 175 (223)
T ss_dssp -----------H--CC--CEEEEEECCGGGGGGCCSCHHHHHHHHHHTTCEEEECCCC-CCCHHHHHHHHHHHHT
T ss_pred -----------h--CCCCCeEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 0 0113589999999998642 22333322 235788999999999999999987764
No 155
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=99.50 E-value=2.4e-14 Score=123.74 Aligned_cols=153 Identities=14% Similarity=0.129 Sum_probs=93.9
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcCCCCcccccccccccc-ceEEEECC-----------EeecccCccccccccccCcccc
Q 018394 20 GRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCI-PGIIHYND-----------TKIQLLDLPGIIEGASEGKGRG 87 (356)
Q Consensus 20 ~~v~LvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~-~G~i~~~g-----------~~i~~~D~pGl~~~~~~~~~~~ 87 (356)
..|+|+|++|||||||+|.|++........|..+.+.. ...+.+++ ..+.++||||.....
T Consensus 12 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~------- 84 (195)
T 3bc1_A 12 IKFLALGDSGVGKTSVLYQYTDGKFNSKFITTVGIDFREKRVVYRANGPDGAVGRGQRIHLQLWDTAGLERFR------- 84 (195)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEECTTSCCCSSCCCEEEEEEEEEECCSGGGH-------
T ss_pred EEEEEECCCCCCHHHHHHHHhcCCCCcCcccccceeeeeEEEEEecCCcccccccCcEEEEEEEeCCCcHHHH-------
Confidence 58999999999999999999986543222232222222 23444553 478899999963211
Q ss_pred ccccccccchhHHHHHHhcCChHHHHHHHHHHHHHccCccccccCcccccceeccceeeeecCCCCCCCHHHHHHHHHHh
Q 018394 88 RQVIAVSKSSDIVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEY 167 (356)
Q Consensus 88 ~~~~~~~~~~d~i~~v~d~~~~~~~~~~i~~~L~~~~i~l~~~~~~lS~g~~qr~~ial~~DEp~~~LD~~~~~~il~~l 167 (356)
......++.+|++++|+|...+... +.+..++ ..+
T Consensus 85 ~~~~~~~~~~d~~i~v~d~~~~~s~-~~~~~~~--------------------------------------------~~i 119 (195)
T 3bc1_A 85 SLTTAFFRDAMGFLLLFDLTNEQSF-LNVRNWI--------------------------------------------SQL 119 (195)
T ss_dssp HHHHHTTTTCSEEEEEEETTCHHHH-HTHHHHH--------------------------------------------HHH
T ss_pred HHHHHHHcCCCEEEEEEECCCHHHH-HHHHHHH--------------------------------------------HHH
Confidence 1122345678888888887664321 1111111 111
Q ss_pred cccCcEEEEccCCCHHHHHHHHhccccccceEEEeecCCCCCh-----hhHHHHhc--CCCEEEeccccccchHHHHHHH
Q 018394 168 KIHNAEVLFREDATVDDLIDVIEGNRKYMKCVYVYNKIDVIGI-----DDVDKLAR--QPNSVVISCNLKLNLDRLLARM 240 (356)
Q Consensus 168 ~~~~~~i~~thd~~~~~~~~~i~~~~~~~p~i~v~NK~Dl~~~-----~~~~~l~~--~~~~i~iSa~~~~~l~~L~~~i 240 (356)
.. . . .....|+++|+||+|+... ++...+.. ..+++++||+++.|++++.+.|
T Consensus 120 ~~------------------~-~-~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l 179 (195)
T 3bc1_A 120 QM------------------H-A-YSENPDIVLCGNKSDLEDQRAVKEEEARELAEKYGIPYFETSAANGTNISHAIEML 179 (195)
T ss_dssp HH------------------H-S-SSSSCCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCCEEECCTTTCTTHHHHHHHH
T ss_pred HH------------------h-c-CCCCCCEEEEEECcccccccccCHHHHHHHHHHcCCCEEEEECCCCCCHHHHHHHH
Confidence 00 0 0 0124699999999998642 22333321 2368999999999999999888
Q ss_pred HHHh
Q 018394 241 WEEM 244 (356)
Q Consensus 241 ~~~l 244 (356)
.+.+
T Consensus 180 ~~~~ 183 (195)
T 3bc1_A 180 LDLI 183 (195)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 7655
No 156
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=99.50 E-value=2.1e-14 Score=123.36 Aligned_cols=152 Identities=20% Similarity=0.207 Sum_probs=97.4
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcCCCCccccccccccccceEEEECCE--eecccCccccccccccCccccccccccccch
Q 018394 20 GRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDT--KIQLLDLPGIIEGASEGKGRGRQVIAVSKSS 97 (356)
Q Consensus 20 ~~v~LvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~--~i~~~D~pGl~~~~~~~~~~~~~~~~~~~~~ 97 (356)
..|+|+|++|||||||+|.|++.. ....++.||.+.....+.+++. .+.++|+||..... ......++.+
T Consensus 19 ~ki~v~G~~~~GKSsli~~l~~~~-~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~-------~~~~~~~~~~ 90 (187)
T 2a9k_A 19 HKVIMVGSGGVGKSALTLQFMYDE-FVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDYA-------AIRDNYFRSG 90 (187)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSC-CCCSCCTTCCEEEEEEEEETTEEEEEEEEECCCTTCCH-------HHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHhhCC-CCCcCCCccceEEEEEEEECCEEEEEEEEECCCCcccH-------HHHHHHhccC
Confidence 589999999999999999999865 3467788888877777888885 67889999953211 0111123445
Q ss_pred hHHHHHHhcCChHHHHHHHHHHHHHccCccccccCcccccceeccceeeeecCCCCCCCHHHHHHHHHHhcccCcEEEEc
Q 018394 98 DIVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNAEVLFR 177 (356)
Q Consensus 98 d~i~~v~d~~~~~~~~~~i~~~L~~~~i~l~~~~~~lS~g~~qr~~ial~~DEp~~~LD~~~~~~il~~l~~~~~~i~~t 177 (356)
|.+++++|...... .+.+..++ ..+
T Consensus 91 d~~i~v~d~~~~~s-~~~~~~~~--------------------------------------------~~i---------- 115 (187)
T 2a9k_A 91 EGFLCVFSITEMES-FAATADFR--------------------------------------------EQI---------- 115 (187)
T ss_dssp SEEEEEEETTCHHH-HHHHHHHH--------------------------------------------HHH----------
T ss_pred CEEEEEEECcCHHH-HHHHHHHH--------------------------------------------HHH----------
Confidence 66666666554321 11111111 111
Q ss_pred cCCCHHHHHHHHhccccccceEEEeecCCCCCh-----hhHHHHhc--CCCEEEeccccccchHHHHHHHHHHh
Q 018394 178 EDATVDDLIDVIEGNRKYMKCVYVYNKIDVIGI-----DDVDKLAR--QPNSVVISCNLKLNLDRLLARMWEEM 244 (356)
Q Consensus 178 hd~~~~~~~~~i~~~~~~~p~i~v~NK~Dl~~~-----~~~~~l~~--~~~~i~iSa~~~~~l~~L~~~i~~~l 244 (356)
.... .....|+++|+||+|+... ++...+.. ..+++++||+++.|++++.+.+.+.+
T Consensus 116 --------~~~~--~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i 179 (187)
T 2a9k_A 116 --------LRVK--EDENVPFLLVGNKSDLEDKRQVSVEEAKNRAEQWNVNYVETSAKTRANVDKVFFDLMREI 179 (187)
T ss_dssp --------HHHH--CCTTCCEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred --------HHhc--CCCCCCEEEEEECccccccCccCHHHHHHHHHHcCCeEEEeCCCCCCCHHHHHHHHHHHH
Confidence 0000 0113699999999998642 22333322 23578999999999999999887655
No 157
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=99.50 E-value=5.9e-14 Score=119.45 Aligned_cols=153 Identities=14% Similarity=0.146 Sum_probs=89.0
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcCCC-CccccccccccccceEEEECCE--eecccCccccccccccCccccccccccccc
Q 018394 20 GRVALIGFPSVGKSTLLTLLTGTHS-EAASYEFTTLTCIPGIIHYNDT--KIQLLDLPGIIEGASEGKGRGRQVIAVSKS 96 (356)
Q Consensus 20 ~~v~LvG~~gaGKSTLln~L~g~~~-~vs~~p~TT~~~~~G~i~~~g~--~i~~~D~pGl~~~~~~~~~~~~~~~~~~~~ 96 (356)
..|+|+|++|||||||+|.|++... ...+.+++|. ....+.+++. .+.++||||..... .. ......++.
T Consensus 5 ~ki~i~G~~~vGKSsl~~~l~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~D~~g~~~~~--~~---~~~~~~~~~ 77 (175)
T 2nzj_A 5 YRVVLLGDPGVGKTSLASLFAGKQERDLHEQLGEDV--YERTLTVDGEDTTLVVVDTWEAEKLD--KS---WSQESCLQG 77 (175)
T ss_dssp EEEEEECCTTSSHHHHHHHHHCC-----CCCSSSSE--EEEEEEETTEEEEEEEECCC---------C---HHHHHTTTS
T ss_pred EEEEEECCCCccHHHHHHHHhcCCCccccCccccce--eEEEEEECCEEEEEEEEecCCCCccc--hh---hhHHhhccc
Confidence 4799999999999999999998763 3444455544 4556778875 56789999963210 00 001122455
Q ss_pred hhHHHHHHhcCChHHHHHHHHHHHHHccCccccccCcccccceeccceeeeecCCCCCCCHHHHHHHHHHhcccCcEEEE
Q 018394 97 SDIVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNAEVLF 176 (356)
Q Consensus 97 ~d~i~~v~d~~~~~~~~~~i~~~L~~~~i~l~~~~~~lS~g~~qr~~ial~~DEp~~~LD~~~~~~il~~l~~~~~~i~~ 176 (356)
+|.+++++|...+.. .+.+..++ ..+...
T Consensus 78 ~~~~i~v~d~~~~~s-~~~~~~~~--------------------------------------------~~l~~~------ 106 (175)
T 2nzj_A 78 GSAYVIVYSIADRGS-FESASELR--------------------------------------------IQLRRT------ 106 (175)
T ss_dssp CSEEEEEEETTCHHH-HHHHHHHH--------------------------------------------HHHHHC------
T ss_pred CCEEEEEEECCCHHH-HHHHHHHH--------------------------------------------HHHHHh------
Confidence 666667766655322 11111111 111000
Q ss_pred ccCCCHHHHHHHHhccccccceEEEeecCCCCChh-----hHHHHhc--CCCEEEeccccccchHHHHHHHHHHh
Q 018394 177 REDATVDDLIDVIEGNRKYMKCVYVYNKIDVIGID-----DVDKLAR--QPNSVVISCNLKLNLDRLLARMWEEM 244 (356)
Q Consensus 177 thd~~~~~~~~~i~~~~~~~p~i~v~NK~Dl~~~~-----~~~~l~~--~~~~i~iSa~~~~~l~~L~~~i~~~l 244 (356)
. .....|+++|+||+|+.... +...+.. ..+++++||++|.|+++|.+.+.+.+
T Consensus 107 -------------~-~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~~ 167 (175)
T 2nzj_A 107 -------------H-QADHVPIILVGNKADLARCREVSVEEGRACAVVFDCKFIETSATLQHNVAELFEGVVRQL 167 (175)
T ss_dssp -------------C-----CCEEEEEECTTCTTTCCSCHHHHHHHHHHHTSEEEECBTTTTBSHHHHHHHHHHHH
T ss_pred -------------h-ccCCCCEEEEEEChhhccccccCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHHHHHHH
Confidence 0 01136999999999997432 2222221 23589999999999999999887765
No 158
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=99.50 E-value=8.3e-15 Score=125.73 Aligned_cols=152 Identities=17% Similarity=0.182 Sum_probs=87.1
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHcCCCCccccccccccccceEEEECCEe--ecccCccccccccccCccccccccccccc
Q 018394 19 HGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTK--IQLLDLPGIIEGASEGKGRGRQVIAVSKS 96 (356)
Q Consensus 19 g~~v~LvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~--i~~~D~pGl~~~~~~~~~~~~~~~~~~~~ 96 (356)
...|+++|++|||||||++.+++.. ...+++.|+.+.....+.+++.. +.++||||..... ......++.
T Consensus 8 ~~ki~v~G~~~~GKssl~~~~~~~~-~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~-------~~~~~~~~~ 79 (182)
T 3bwd_D 8 FIKCVTVGDGAVGKTCLLISYTSNT-FPTDYVPTVFDNFSANVVVNGATVNLGLWDTAGQEDYN-------RLRPLSYRG 79 (182)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHSC-CC----------CBCCCC-------CEEECCCC-CTTT-------TTGGGGGTT
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCC-CCCCCCCeeeeeEEEEEEECCEEEEEEEEECCCChhhh-------hhHHhhccC
Confidence 4689999999999999999999765 34566777766555555566654 4589999953211 111223567
Q ss_pred hhHHHHHHhcCChHHHHHHHHHHHHHccCccccccCcccccceeccceeeeecCCCCCCCHHHHHHHHHHhcccCcEEEE
Q 018394 97 SDIVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNAEVLF 176 (356)
Q Consensus 97 ~d~i~~v~d~~~~~~~~~~i~~~L~~~~i~l~~~~~~lS~g~~qr~~ial~~DEp~~~LD~~~~~~il~~l~~~~~~i~~ 176 (356)
+|++++++|...+..... +.+ .++..+.
T Consensus 80 ~d~~i~v~d~~~~~s~~~-~~~-------------------------------------------~~~~~~~-------- 107 (182)
T 3bwd_D 80 ADVFILAFSLISKASYEN-VSK-------------------------------------------KWIPELK-------- 107 (182)
T ss_dssp CSEEEEEEETTCHHHHHH-HHH-------------------------------------------THHHHHH--------
T ss_pred CCEEEEEEECCCHHHHHH-HHH-------------------------------------------HHHHHHH--------
Confidence 888888888766432111 110 0111110
Q ss_pred ccCCCHHHHHHHHhccccccceEEEeecCCCCChhh---------------HHHHh---cCCCEEEeccccccchHHHHH
Q 018394 177 REDATVDDLIDVIEGNRKYMKCVYVYNKIDVIGIDD---------------VDKLA---RQPNSVVISCNLKLNLDRLLA 238 (356)
Q Consensus 177 thd~~~~~~~~~i~~~~~~~p~i~v~NK~Dl~~~~~---------------~~~l~---~~~~~i~iSa~~~~~l~~L~~ 238 (356)
......|+++|+||+|+..... ...+. ...+++++||++|.|++++.+
T Consensus 108 --------------~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~ 173 (182)
T 3bwd_D 108 --------------HYAPGVPIVLVGTKLDLRDDKQFFIDHPGAVPITTVQGEELKKLIGAPAYIECSSKSQENVKGVFD 173 (182)
T ss_dssp --------------HHCTTCCEEEEEECHHHHTCHHHHHHC--CCCCCHHHHHHHHHHHTCSEEEECCTTTCTTHHHHHH
T ss_pred --------------HhCCCCCEEEEEechhhhcCcccccccccCCCCCHHHHHHHHHHcCCCEEEEEECCCCCCHHHHHH
Confidence 0011369999999999864321 22222 223588999999999999999
Q ss_pred HHHHHh
Q 018394 239 RMWEEM 244 (356)
Q Consensus 239 ~i~~~l 244 (356)
.+.+.+
T Consensus 174 ~l~~~i 179 (182)
T 3bwd_D 174 AAIRVV 179 (182)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 987754
No 159
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=99.50 E-value=3.4e-14 Score=119.99 Aligned_cols=150 Identities=17% Similarity=0.153 Sum_probs=83.6
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcCCC-CccccccccccccceEEEECCEe--ecccCccccccccccCccccccccccccc
Q 018394 20 GRVALIGFPSVGKSTLLTLLTGTHS-EAASYEFTTLTCIPGIIHYNDTK--IQLLDLPGIIEGASEGKGRGRQVIAVSKS 96 (356)
Q Consensus 20 ~~v~LvG~~gaGKSTLln~L~g~~~-~vs~~p~TT~~~~~G~i~~~g~~--i~~~D~pGl~~~~~~~~~~~~~~~~~~~~ 96 (356)
..|+|+|++|||||||+|.+++... ++++.+++|.+ ..+.+++.. +.++|+||...... .....++.
T Consensus 3 ~ki~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~i~D~~g~~~~~~-------~~~~~~~~ 72 (166)
T 3q72_A 3 YKVLLLGAPGVGKSALARIFGGVEDGPEAEAAGHTYD---RSIVVDGEEASLMVYDIWEQDGGRW-------LPGHCMAM 72 (166)
T ss_dssp CEEEEEESTTSSHHHHHHHHCCC----------CEEE---EEEEETTEEEEEEEEECC----------------------
T ss_pred EEEEEECCCCCCHHHHHHHHcCccccCCCCccccceE---EEEEECCEEEEEEEEECCCCccchh-------hhhhhhhh
Confidence 5799999999999999999998764 56777888875 345666654 56789998543111 11112355
Q ss_pred hhHHHHHHhcCChHHHHHHHHHHHHHccCccccccCcccccceeccceeeeecCCCCCCCHHHHHHHHHHhcccCcEEEE
Q 018394 97 SDIVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNAEVLF 176 (356)
Q Consensus 97 ~d~i~~v~d~~~~~~~~~~i~~~L~~~~i~l~~~~~~lS~g~~qr~~ial~~DEp~~~LD~~~~~~il~~l~~~~~~i~~ 176 (356)
+|.+++++|...+.. .+.+..++ ..+...
T Consensus 73 ~~~~i~v~d~~~~~s-~~~~~~~~--------------------------------------------~~~~~~------ 101 (166)
T 3q72_A 73 GDAYVIVYSVTDKGS-FEKASELR--------------------------------------------VQLRRA------ 101 (166)
T ss_dssp CCEEEEEEETTCHHH-HHHHHHHH--------------------------------------------HHHHHC------
T ss_pred CCEEEEEEECCCHHH-HHHHHHHH--------------------------------------------HHHHHh------
Confidence 676777777665422 11111111 111000
Q ss_pred ccCCCHHHHHHHHhccccccceEEEeecCCCCChh-----hHHHHhc--CCCEEEeccccccchHHHHHHHHHHh
Q 018394 177 REDATVDDLIDVIEGNRKYMKCVYVYNKIDVIGID-----DVDKLAR--QPNSVVISCNLKLNLDRLLARMWEEM 244 (356)
Q Consensus 177 thd~~~~~~~~~i~~~~~~~p~i~v~NK~Dl~~~~-----~~~~l~~--~~~~i~iSa~~~~~l~~L~~~i~~~l 244 (356)
......|+++|+||+|+.... +...+.. ..+++++||++|.|++++.+.+.+.+
T Consensus 102 --------------~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~ 162 (166)
T 3q72_A 102 --------------RQTDDVPIILVGNKSDLVRSREVSVDEGRACAVVFDCKFIETSAALHHNVQALFEGVVRQI 162 (166)
T ss_dssp --------------C---CCCEEEEEECTTCCSSCCSCHHHHHHHHHHTTCEEEECBGGGTBSHHHHHHHHHHHH
T ss_pred --------------cCCCCCCEEEEEeccccccccccCHHHHHHHHHHhCCcEEEeccCCCCCHHHHHHHHHHHH
Confidence 001136999999999987432 2222222 23578999999999999999988765
No 160
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=99.50 E-value=2.8e-14 Score=123.75 Aligned_cols=154 Identities=19% Similarity=0.166 Sum_probs=97.7
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHcCCCCccccccccccccceEEEECCE--eecccCccccccccccCccccccccccccc
Q 018394 19 HGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDT--KIQLLDLPGIIEGASEGKGRGRQVIAVSKS 96 (356)
Q Consensus 19 g~~v~LvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~--~i~~~D~pGl~~~~~~~~~~~~~~~~~~~~ 96 (356)
...|+|+|++|||||||+|.|++........|..+.+.....+.+++. .+.++||||..... ......++.
T Consensus 15 ~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~-------~~~~~~~~~ 87 (195)
T 1x3s_A 15 TLKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQERFR-------TLTPSYYRG 87 (195)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECSSGGGC-------CSHHHHHTT
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCCccCCCccceEEEEEEEEECCeEEEEEEEeCCCchhhh-------hhhHHHhcc
Confidence 358999999999999999999987644334454455555566777764 57788999953211 111223466
Q ss_pred hhHHHHHHhcCChHHHHHHHHHHHHHccCccccccCcccccceeccceeeeecCCCCCCCHHHHHHHHHHhcccCcEEEE
Q 018394 97 SDIVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNAEVLF 176 (356)
Q Consensus 97 ~d~i~~v~d~~~~~~~~~~i~~~L~~~~i~l~~~~~~lS~g~~qr~~ial~~DEp~~~LD~~~~~~il~~l~~~~~~i~~ 176 (356)
+|++++|+|...+... +.+..++ ..+...
T Consensus 88 ~d~ii~v~d~~~~~s~-~~~~~~~--------------------------------------------~~i~~~------ 116 (195)
T 1x3s_A 88 AQGVILVYDVTRRDTF-VKLDNWL--------------------------------------------NELETY------ 116 (195)
T ss_dssp CCEEEEEEETTCHHHH-HTHHHHH--------------------------------------------HHHTTC------
T ss_pred CCEEEEEEECcCHHHH-HHHHHHH--------------------------------------------HHHHHh------
Confidence 7888888887654321 1111111 111100
Q ss_pred ccCCCHHHHHHHHhccccccceEEEeecCCCCCh----hhHHHHhc--CCCEEEeccccccchHHHHHHHHHHh
Q 018394 177 REDATVDDLIDVIEGNRKYMKCVYVYNKIDVIGI----DDVDKLAR--QPNSVVISCNLKLNLDRLLARMWEEM 244 (356)
Q Consensus 177 thd~~~~~~~~~i~~~~~~~p~i~v~NK~Dl~~~----~~~~~l~~--~~~~i~iSa~~~~~l~~L~~~i~~~l 244 (356)
......|+++|+||+|+... ++...+.. ...++++||+++.|++++.+.+.+.+
T Consensus 117 --------------~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~ 176 (195)
T 1x3s_A 117 --------------CTRNDIVNMLVGNKIDKENREVDRNEGLKFARKHSMLFIEASAKTCDGVQCAFEELVEKI 176 (195)
T ss_dssp --------------CSCSCCEEEEEEECTTSSSCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred --------------cCcCCCcEEEEEECCcCcccccCHHHHHHHHHHcCCEEEEecCCCCCCHHHHHHHHHHHH
Confidence 00123689999999998532 22333322 23478999999999999999988765
No 161
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=99.50 E-value=2.1e-14 Score=127.64 Aligned_cols=151 Identities=18% Similarity=0.178 Sum_probs=88.8
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcCCCCccccccccccccceEEEECCE--eecccCccccccccccCccccccccccccch
Q 018394 20 GRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDT--KIQLLDLPGIIEGASEGKGRGRQVIAVSKSS 97 (356)
Q Consensus 20 ~~v~LvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~--~i~~~D~pGl~~~~~~~~~~~~~~~~~~~~~ 97 (356)
..|+|+|.+|||||||+|.|++... ...++.|+.+.....+.+++. .+.++||||..... ......++.+
T Consensus 35 ~ki~vvG~~~vGKSsli~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~-------~~~~~~~~~~ 106 (214)
T 2j1l_A 35 VKVVLVGDGGCGKTSLLMVFADGAF-PESYTPTVFERYMVNLQVKGKPVHLHIWDTAGQDDYD-------RLRPLFYPDA 106 (214)
T ss_dssp EEEEEEECTTSSHHHHHHHHHC--------CCCCCEEEEEEEEETTEEEEEEEEEC----------------------CE
T ss_pred EEEEEECcCCCCHHHHHHHHHcCCC-CCCCCCccceeEEEEEEECCEEEEEEEEECCCchhhh-------HHHHHHhccC
Confidence 5899999999999999999998653 345666776666677778876 57789999953211 0111234677
Q ss_pred hHHHHHHhcCChHHHHHHHHHHHHHccCccccccCcccccceeccceeeeecCCCCCCCHHHHHHHHHHhcccCcEEEEc
Q 018394 98 DIVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNAEVLFR 177 (356)
Q Consensus 98 d~i~~v~d~~~~~~~~~~i~~~L~~~~i~l~~~~~~lS~g~~qr~~ial~~DEp~~~LD~~~~~~il~~l~~~~~~i~~t 177 (356)
|++++|+|...+.........+ +..+.
T Consensus 107 d~~i~v~d~~~~~s~~~~~~~~--------------------------------------------~~~~~--------- 133 (214)
T 2j1l_A 107 SVLLLCFDVTSPNSFDNIFNRW--------------------------------------------YPEVN--------- 133 (214)
T ss_dssp EEEEEEEETTCHHHHHHHHHTH--------------------------------------------HHHHH---------
T ss_pred CEEEEEEECcCHHHHHHHHHHH--------------------------------------------HHHHH---------
Confidence 8888888876543211110011 11110
Q ss_pred cCCCHHHHHHHHhccccccceEEEeecCCCCChhh-----------------HHHHhc---CCCEEEeccccccchHHHH
Q 018394 178 EDATVDDLIDVIEGNRKYMKCVYVYNKIDVIGIDD-----------------VDKLAR---QPNSVVISCNLKLNLDRLL 237 (356)
Q Consensus 178 hd~~~~~~~~~i~~~~~~~p~i~v~NK~Dl~~~~~-----------------~~~l~~---~~~~i~iSa~~~~~l~~L~ 237 (356)
......|+++|+||+|+..... ...+.+ ...++++||++|.|++++.
T Consensus 134 -------------~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~SA~~g~gi~el~ 200 (214)
T 2j1l_A 134 -------------HFCKKVPIIVVGCKTDLRKDKSLVNKLRRNGLEPVTYHRGQEMARSVGAVAYLECSARLHDNVHAVF 200 (214)
T ss_dssp -------------HHCSSCCEEEEEECGGGGSCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECBTTTTBSHHHHH
T ss_pred -------------HhCCCCCEEEEEEChhhhccchhhhhhcccccCcccHHHHHHHHHhcCCCEEEEecCCCCCCHHHHH
Confidence 0011359999999999975321 122221 1258899999999999999
Q ss_pred HHHHHHh
Q 018394 238 ARMWEEM 244 (356)
Q Consensus 238 ~~i~~~l 244 (356)
+.+.+.+
T Consensus 201 ~~l~~~~ 207 (214)
T 2j1l_A 201 QEAAEVA 207 (214)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9887754
No 162
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=99.50 E-value=5.2e-14 Score=121.97 Aligned_cols=153 Identities=18% Similarity=0.181 Sum_probs=97.4
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcCCCCccccccccccccceEEEECCEe--ecccCccccccccccCccccccccccccch
Q 018394 20 GRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTK--IQLLDLPGIIEGASEGKGRGRQVIAVSKSS 97 (356)
Q Consensus 20 ~~v~LvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~--i~~~D~pGl~~~~~~~~~~~~~~~~~~~~~ 97 (356)
..|+++|.+|||||||+|.|++.. ....++.||.+.....+.+++.. +.++|+||...... .....++.+
T Consensus 22 ~ki~vvG~~~~GKSsli~~l~~~~-~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~-------~~~~~~~~~ 93 (190)
T 3con_A 22 YKLVVVGAGGVGKSALTIQLIQNH-FVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSA-------MRDQYMRTG 93 (190)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSS-CCSCCCTTCCEEEEEEEEETTEEEEEEEEECCC------------------CTTC
T ss_pred eEEEEECcCCCCHHHHHHHHHcCC-CccccCCccceEEEEEEEECCEEEEEEEEECCChHHHHH-------HHHHhhCcC
Confidence 589999999999999999999864 34567778877777788888754 77899999532110 111234567
Q ss_pred hHHHHHHhcCChHHHHHHHHHHHHHccCccccccCcccccceeccceeeeecCCCCCCCHHHHHHHHHHhcccCcEEEEc
Q 018394 98 DIVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNAEVLFR 177 (356)
Q Consensus 98 d~i~~v~d~~~~~~~~~~i~~~L~~~~i~l~~~~~~lS~g~~qr~~ial~~DEp~~~LD~~~~~~il~~l~~~~~~i~~t 177 (356)
|++++++|...... .+.+..++.. +.
T Consensus 94 d~~i~v~d~~~~~s-~~~~~~~~~~--------------------------------------------i~--------- 119 (190)
T 3con_A 94 EGFLCVFAINNSKS-FADINLYREQ--------------------------------------------IK--------- 119 (190)
T ss_dssp SEEEEEEETTCHHH-HHHHHHHHHH--------------------------------------------HH---------
T ss_pred CEEEEEEECcCHHH-HHHHHHHHHH--------------------------------------------HH---------
Confidence 77777777665422 1111111111 00
Q ss_pred cCCCHHHHHHHHhccccccceEEEeecCCCCCh----hhHHHHhc--CCCEEEeccccccchHHHHHHHHHHhC
Q 018394 178 EDATVDDLIDVIEGNRKYMKCVYVYNKIDVIGI----DDVDKLAR--QPNSVVISCNLKLNLDRLLARMWEEMG 245 (356)
Q Consensus 178 hd~~~~~~~~~i~~~~~~~p~i~v~NK~Dl~~~----~~~~~l~~--~~~~i~iSa~~~~~l~~L~~~i~~~l~ 245 (356)
... .....|+++|+||+|+... ++...+.+ ..+++++||+++.|++++.+.+.+.+.
T Consensus 120 ----------~~~-~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~ 182 (190)
T 3con_A 120 ----------RVK-DSDDVPMVLVGNKCDLPTRTVDTKQAHELAKSYGIPFIETSAKTRQGVEDAFYTLVREIR 182 (190)
T ss_dssp ----------HHH-TCSCCCEEEEEECTTCSCCCSCHHHHHHHHHHHTCCEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred ----------HHh-CCCCCeEEEEEECCcCCcccCCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 000 0113699999999998642 23333332 236899999999999999998877653
No 163
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=99.50 E-value=2.1e-14 Score=121.08 Aligned_cols=152 Identities=16% Similarity=0.152 Sum_probs=92.5
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcCCCCccccccccccccceEEEECC--EeecccCccccccccccCccccccccccccch
Q 018394 20 GRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYND--TKIQLLDLPGIIEGASEGKGRGRQVIAVSKSS 97 (356)
Q Consensus 20 ~~v~LvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g--~~i~~~D~pGl~~~~~~~~~~~~~~~~~~~~~ 97 (356)
..|+++|++|||||||+|.|++... ...++.|+.+.....+.+++ ..+.++|+||..... .. ....++.+
T Consensus 4 ~ki~v~G~~~~GKssli~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~----~~---~~~~~~~~ 75 (167)
T 1c1y_A 4 YKLVVLGSGGVGKSALTVQFVQGIF-VEKYDPTIEDSYRKQVEVDCQQCMLEILDTAGTEQFT----AM---RDLYMKNG 75 (167)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHCCC-CCSCCCCSEEEEEEEEESSSCEEEEEEEEECSSCSST----TH---HHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCC-CCCCCCCccceEEEEEEECCEEEEEEEEECCChHHHH----HH---HHHHhccC
Confidence 4799999999999999999998643 34555565555555555654 357789999953211 00 11123445
Q ss_pred hHHHHHHhcCChHHHHHHHHHHHHHccCccccccCcccccceeccceeeeecCCCCCCCHHHHHHHHHHhcccCcEEEEc
Q 018394 98 DIVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNAEVLFR 177 (356)
Q Consensus 98 d~i~~v~d~~~~~~~~~~i~~~L~~~~i~l~~~~~~lS~g~~qr~~ial~~DEp~~~LD~~~~~~il~~l~~~~~~i~~t 177 (356)
|.+++++|...+.. .+.+..+ +..+
T Consensus 76 d~~i~v~d~~~~~s-~~~~~~~--------------------------------------------~~~i---------- 100 (167)
T 1c1y_A 76 QGFALVYSITAQST-FNDLQDL--------------------------------------------REQI---------- 100 (167)
T ss_dssp SEEEEEEETTCHHH-HHTHHHH--------------------------------------------HHHH----------
T ss_pred CEEEEEEECCCHHH-HHHHHHH--------------------------------------------HHHH----------
Confidence 66666666554321 1111111 1110
Q ss_pred cCCCHHHHHHHHhccccccceEEEeecCCCCCh-----hhHHHHhc---CCCEEEeccccccchHHHHHHHHHHh
Q 018394 178 EDATVDDLIDVIEGNRKYMKCVYVYNKIDVIGI-----DDVDKLAR---QPNSVVISCNLKLNLDRLLARMWEEM 244 (356)
Q Consensus 178 hd~~~~~~~~~i~~~~~~~p~i~v~NK~Dl~~~-----~~~~~l~~---~~~~i~iSa~~~~~l~~L~~~i~~~l 244 (356)
.... .....|+++|+||+|+... ++...+.+ ..+++++||++|.|+++|.+.+.+.+
T Consensus 101 --------~~~~--~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i 165 (167)
T 1c1y_A 101 --------LRVK--DTEDVPMILVGNKCDLEDERVVGKEQGQNLARQWCNCAFLESSAKSKINVNEIFYDLVRQI 165 (167)
T ss_dssp --------HHHH--CCSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTSCEEEECBTTTTBSHHHHHHHHHHHH
T ss_pred --------HHhh--CcCCCcEEEEEECccccccccCCHHHHHHHHHHccCCcEEEecCCCCCCHHHHHHHHHHHH
Confidence 0000 1124699999999998643 22333322 24588999999999999999988765
No 164
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=99.49 E-value=4.1e-14 Score=119.70 Aligned_cols=150 Identities=18% Similarity=0.220 Sum_probs=93.2
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcCCCC--ccccccccccccceEEEECC--EeecccCccccccccccCcccccccccccc
Q 018394 20 GRVALIGFPSVGKSTLLTLLTGTHSE--AASYEFTTLTCIPGIIHYND--TKIQLLDLPGIIEGASEGKGRGRQVIAVSK 95 (356)
Q Consensus 20 ~~v~LvG~~gaGKSTLln~L~g~~~~--vs~~p~TT~~~~~G~i~~~g--~~i~~~D~pGl~~~~~~~~~~~~~~~~~~~ 95 (356)
..|+++|++|||||||+|.|++.... ..+.+++|... ..+.+++ ..+.++||||..... ......++
T Consensus 7 ~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~Dt~G~~~~~-------~~~~~~~~ 77 (170)
T 1z0j_A 7 LKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMT--KTVQYQNELHKFLIWDTAGLERFR-------ALAPMYYR 77 (170)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEE--EEEEETTEEEEEEEEEECCSGGGG-------GGTHHHHT
T ss_pred eEEEEECcCCCCHHHHHHHHHcCCCCCCCCCceeEEEEE--EEEEECCeEEEEEEEcCCCchhhh-------cccHhhCc
Confidence 58999999999999999999987632 23334444432 3445555 567889999963211 11112345
Q ss_pred chhHHHHHHhcCChHHHHHHHHHHHHHccCccccccCcccccceeccceeeeecCCCCCCCHHHHHHHHHHhcccCcEEE
Q 018394 96 SSDIVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNAEVL 175 (356)
Q Consensus 96 ~~d~i~~v~d~~~~~~~~~~i~~~L~~~~i~l~~~~~~lS~g~~qr~~ial~~DEp~~~LD~~~~~~il~~l~~~~~~i~ 175 (356)
.+|++++++|...+... +.+..++ ..+..
T Consensus 78 ~~~~~i~v~d~~~~~s~-~~~~~~~--------------------------------------------~~l~~------ 106 (170)
T 1z0j_A 78 GSAAAIIVYDITKEETF-STLKNWV--------------------------------------------RELRQ------ 106 (170)
T ss_dssp TCSEEEEEEETTCHHHH-HHHHHHH--------------------------------------------HHHHH------
T ss_pred CCCEEEEEEECcCHHHH-HHHHHHH--------------------------------------------HHHHH------
Confidence 67777777777654321 1111111 11110
Q ss_pred EccCCCHHHHHHHHhccccccceEEEeecCCCCCh-----hhHHHHhc--CCCEEEeccccccchHHHHHHHHHHh
Q 018394 176 FREDATVDDLIDVIEGNRKYMKCVYVYNKIDVIGI-----DDVDKLAR--QPNSVVISCNLKLNLDRLLARMWEEM 244 (356)
Q Consensus 176 ~thd~~~~~~~~~i~~~~~~~p~i~v~NK~Dl~~~-----~~~~~l~~--~~~~i~iSa~~~~~l~~L~~~i~~~l 244 (356)
. .....|+++|.||+|+... ++...+.. ..+++++||+++.|+++|.+.+.+.+
T Consensus 107 -------------~--~~~~~~iilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~i~~~i 167 (170)
T 1z0j_A 107 -------------H--GPPSIVVAIAGNKCDLTDVREVMERDAKDYADSIHAIFVETSAKNAININELFIEISRRI 167 (170)
T ss_dssp -------------H--SCTTSEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECBTTTTBSHHHHHHHHHHHC
T ss_pred -------------h--CCCCCcEEEEEECCccccccccCHHHHHHHHHHcCCEEEEEeCCCCcCHHHHHHHHHHHH
Confidence 0 1123589999999999643 22333322 23588999999999999999998765
No 165
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=99.49 E-value=4.8e-14 Score=122.37 Aligned_cols=152 Identities=19% Similarity=0.176 Sum_probs=95.5
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcCCCCccccccccccccceEEEECC--EeecccCccccccccccCccccccccccccch
Q 018394 20 GRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYND--TKIQLLDLPGIIEGASEGKGRGRQVIAVSKSS 97 (356)
Q Consensus 20 ~~v~LvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g--~~i~~~D~pGl~~~~~~~~~~~~~~~~~~~~~ 97 (356)
..|+|+|++|||||||+|.|++........|..+.+.....+.+++ ..+.++|+||..... ......++.+
T Consensus 23 ~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~-------~~~~~~~~~~ 95 (189)
T 2gf9_A 23 FKLLLIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTVYRHDKRIKLQIWDTAGQERYR-------TITTAYYRGA 95 (189)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCCCEEEEEEEEETTEEEEEEEEECCSCCSSC-------CSGGGGGTTC
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCcCCceeEEEEEEEEEECCeEEEEEEEeCCCcHHHh-------hhHHHhccCC
Confidence 4899999999999999999998764333334333344444566665 467889999953211 1122345678
Q ss_pred hHHHHHHhcCChHHHHHHHHHHHHHccCccccccCcccccceeccceeeeecCCCCCCCHHHHHHHHHHhcccCcEEEEc
Q 018394 98 DIVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNAEVLFR 177 (356)
Q Consensus 98 d~i~~v~d~~~~~~~~~~i~~~L~~~~i~l~~~~~~lS~g~~qr~~ial~~DEp~~~LD~~~~~~il~~l~~~~~~i~~t 177 (356)
|++++|+|...... .+.+..++ ..+..
T Consensus 96 d~ii~v~d~~~~~s-~~~~~~~~--------------------------------------------~~i~~-------- 122 (189)
T 2gf9_A 96 MGFLLMYDIANQES-FAAVQDWA--------------------------------------------TQIKT-------- 122 (189)
T ss_dssp SEEEEEEETTCHHH-HHTHHHHH--------------------------------------------HHHHH--------
T ss_pred CEEEEEEECCCHHH-HHHHHHHH--------------------------------------------HHHHH--------
Confidence 88888888765432 11111111 11110
Q ss_pred cCCCHHHHHHHHhccccccceEEEeecCCCCCh-----hhHHHHhc--CCCEEEeccccccchHHHHHHHHHHh
Q 018394 178 EDATVDDLIDVIEGNRKYMKCVYVYNKIDVIGI-----DDVDKLAR--QPNSVVISCNLKLNLDRLLARMWEEM 244 (356)
Q Consensus 178 hd~~~~~~~~~i~~~~~~~p~i~v~NK~Dl~~~-----~~~~~l~~--~~~~i~iSa~~~~~l~~L~~~i~~~l 244 (356)
. .....|+++|+||+|+... ++...+.+ ...++++||+++.|+++|.+.+.+.+
T Consensus 123 -----------~--~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~i 183 (189)
T 2gf9_A 123 -----------Y--SWDNAQVILVGNKCDLEDERVVPAEDGRRLADDLGFEFFEASAKENINVKQVFERLVDVI 183 (189)
T ss_dssp -----------H--SCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEECBTTTTBSHHHHHHHHHHHH
T ss_pred -----------h--cCCCCCEEEEEECcccccccCCCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 0 0113599999999998643 22333322 23588999999999999999887654
No 166
>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}
Probab=99.49 E-value=1.4e-15 Score=133.46 Aligned_cols=152 Identities=18% Similarity=0.149 Sum_probs=98.3
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcCCCCccccccccccccceEEEECCE--eecccCccccccccccCccccccccccccch
Q 018394 20 GRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDT--KIQLLDLPGIIEGASEGKGRGRQVIAVSKSS 97 (356)
Q Consensus 20 ~~v~LvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~--~i~~~D~pGl~~~~~~~~~~~~~~~~~~~~~ 97 (356)
..|+|+|++|||||||+|.|++........|.+|.+.....+.+++. .+.++||||..... ......++.+
T Consensus 34 ~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~-------~~~~~~~~~~ 106 (199)
T 3l0i_B 34 FKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFR-------TITSSYYRGA 106 (199)
T ss_dssp EEEEEECCTTSCCTTTTTSSBCCCCCCHHHHHHCCSEEEEEEEETTEEEEEEEECCTTCTTCC-------CCSCC--CCC
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCCcCCcccceEEEEEEEECCEEEEEEEEECCCcHhHH-------HHHHHHhhcC
Confidence 58999999999999999999988766667788888888889999884 57889999953211 1122345778
Q ss_pred hHHHHHHhcCChHHHHHHHHHHHHHccCccccccCcccccceeccceeeeecCCCCCCCHHHHHHHHHHhcccCcEEEEc
Q 018394 98 DIVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNAEVLFR 177 (356)
Q Consensus 98 d~i~~v~d~~~~~~~~~~i~~~L~~~~i~l~~~~~~lS~g~~qr~~ial~~DEp~~~LD~~~~~~il~~l~~~~~~i~~t 177 (356)
|++++|+|...... .+.+..++.. +..
T Consensus 107 d~~i~v~d~~~~~s-~~~~~~~~~~--------------------------------------------i~~-------- 133 (199)
T 3l0i_B 107 HGIIVVYDVTDQES-FNNVKQWLQE--------------------------------------------IDR-------- 133 (199)
T ss_dssp SEEEECC-CCCSHH-HHHHHHHHHH--------------------------------------------HHS--------
T ss_pred CEEEEEEECCCHHH-HHHHHHHHHH--------------------------------------------HHH--------
Confidence 88888888876432 1222222211 110
Q ss_pred cCCCHHHHHHHHhccccccceEEEeecCCCCChh-----hHHHHhc--CCCEEEeccccccchHHHHHHHHHHh
Q 018394 178 EDATVDDLIDVIEGNRKYMKCVYVYNKIDVIGID-----DVDKLAR--QPNSVVISCNLKLNLDRLLARMWEEM 244 (356)
Q Consensus 178 hd~~~~~~~~~i~~~~~~~p~i~v~NK~Dl~~~~-----~~~~l~~--~~~~i~iSa~~~~~l~~L~~~i~~~l 244 (356)
......|+++|+||+|+.... +...+.. ..+++++||+++.|++++.+.|.+.+
T Consensus 134 -------------~~~~~~p~ilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~vSA~~g~gv~~l~~~l~~~l 194 (199)
T 3l0i_B 134 -------------YASENVNKLLVGNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEI 194 (199)
T ss_dssp -------------CC-CCSEEEEC-CCSSCC--CCCCSCC-CHHHHTTTCCBCCCCC---HHHHHHHHHHTTTT
T ss_pred -------------hccCCCCEEEEEECccCCccccCCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 001135999999999986432 2223322 23578899999999999999887655
No 167
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=99.49 E-value=2.4e-14 Score=120.46 Aligned_cols=152 Identities=21% Similarity=0.183 Sum_probs=93.6
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcCCCCccccccccccccceEEEECCEe--ecccCccccccccccCccccccccccccch
Q 018394 20 GRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTK--IQLLDLPGIIEGASEGKGRGRQVIAVSKSS 97 (356)
Q Consensus 20 ~~v~LvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~--i~~~D~pGl~~~~~~~~~~~~~~~~~~~~~ 97 (356)
..|+++|++|||||||+|.+++.... ..++.|+.+.....+.+++.. +.++|+||...... .....++.+
T Consensus 4 ~~i~v~G~~~~GKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~-------~~~~~~~~~ 75 (167)
T 1kao_A 4 YKVVVLGSGGVGKSALTVQFVTGTFI-EKYDPTIEDFYRKEIEVDSSPSVLEILDTAGTEQFAS-------MRDLYIKNG 75 (167)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSCCC-SCCCTTCCEEEEEEEEETTEEEEEEEEECCCTTCCHH-------HHHHHHHHC
T ss_pred EEEEEECCCCCCHHHHHHHHHcCCCc-ccCCCCcceeEEEEEEECCEEEEEEEEECCCchhhHH-------HHHHHhccC
Confidence 57999999999999999999976532 455666666666677788765 77899999532110 011123445
Q ss_pred hHHHHHHhcCChHHHHHHHHHHHHHccCccccccCcccccceeccceeeeecCCCCCCCHHHHHHHHHHhcccCcEEEEc
Q 018394 98 DIVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNAEVLFR 177 (356)
Q Consensus 98 d~i~~v~d~~~~~~~~~~i~~~L~~~~i~l~~~~~~lS~g~~qr~~ial~~DEp~~~LD~~~~~~il~~l~~~~~~i~~t 177 (356)
|.+++++|...+... +.+..++ ..+
T Consensus 76 ~~~i~v~d~~~~~s~-~~~~~~~--------------------------------------------~~i---------- 100 (167)
T 1kao_A 76 QGFILVYSLVNQQSF-QDIKPMR--------------------------------------------DQI---------- 100 (167)
T ss_dssp SEEEEEEETTCHHHH-HHHHHHH--------------------------------------------HHH----------
T ss_pred CEEEEEEeCCCHHHH-HHHHHHH--------------------------------------------HHH----------
Confidence 555556555543211 1111111 110
Q ss_pred cCCCHHHHHHHHhccccccceEEEeecCCCCChh-----hHHHHhc--CCCEEEeccccccchHHHHHHHHHHh
Q 018394 178 EDATVDDLIDVIEGNRKYMKCVYVYNKIDVIGID-----DVDKLAR--QPNSVVISCNLKLNLDRLLARMWEEM 244 (356)
Q Consensus 178 hd~~~~~~~~~i~~~~~~~p~i~v~NK~Dl~~~~-----~~~~l~~--~~~~i~iSa~~~~~l~~L~~~i~~~l 244 (356)
.... .....|+++|+||+|+.... +...+.. ..+++++||++|.|+++|.+.+.+.+
T Consensus 101 --------~~~~--~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~ 164 (167)
T 1kao_A 101 --------IRVK--RYEKVPVILVGNKVDLESEREVSSSEGRALAEEWGCPFMETSAKSKTMVDELFAEIVRQM 164 (167)
T ss_dssp --------HHHT--TTSCCCEEEEEECGGGGGGCCSCHHHHHHHHHHHTSCEEEECTTCHHHHHHHHHHHHHHH
T ss_pred --------HHhc--CCCCCCEEEEEECCcccccccCCHHHHHHHHHHhCCCEEEecCCCCcCHHHHHHHHHHHH
Confidence 0000 01236999999999986432 2222321 23689999999999999999887754
No 168
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=99.49 E-value=8.8e-16 Score=147.43 Aligned_cols=50 Identities=16% Similarity=0.083 Sum_probs=37.0
Q ss_pred cceEEEeecCCCCChhh----HHHHh------------cCCCEEEeccccccchHHHHHHHHHHhC
Q 018394 196 MKCVYVYNKIDVIGIDD----VDKLA------------RQPNSVVISCNLKLNLDRLLARMWEEMG 245 (356)
Q Consensus 196 ~p~i~v~NK~Dl~~~~~----~~~l~------------~~~~~i~iSa~~~~~l~~L~~~i~~~l~ 245 (356)
.|.++|+||+|+..... ...+. ..++++++||+++.|+++|.+.|.+.+.
T Consensus 213 ~~~ivVlNK~Dl~~~~~~~~~~~~l~~~l~~~~~~a~~~~~~vi~iSA~~g~Gi~~L~~~I~~~~~ 278 (349)
T 2www_A 213 MADLVAVTKSDGDLIVPARRIQAEYVSALKLLRKRSQVWKPKVIRISARSGEGISEMWDKMKDFQD 278 (349)
T ss_dssp SCSEEEECCCSGGGHHHHHHHHHHHHHHHTTCC-----CCCEEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred cCCEEEEeeecCCCchhHHHHHHHHHHHHHhcCccccCCCceEEEEecCCCCCHHHHHHHHHHHHH
Confidence 48899999999975332 12221 0245789999999999999999988764
No 169
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.49 E-value=2.4e-14 Score=126.37 Aligned_cols=82 Identities=18% Similarity=0.257 Sum_probs=53.8
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcCCCCccccccccccccceEEEECCE--eecccCccccccccccCccccccccccccch
Q 018394 20 GRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDT--KIQLLDLPGIIEGASEGKGRGRQVIAVSKSS 97 (356)
Q Consensus 20 ~~v~LvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~--~i~~~D~pGl~~~~~~~~~~~~~~~~~~~~~ 97 (356)
..|+|+|.+|||||||+|.|++...+ ..+..|+.+.....+.+++. .+.++||||..... ......++.+
T Consensus 26 ~ki~vvG~~~~GKSsli~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~-------~~~~~~~~~~ 97 (207)
T 2fv8_A 26 KKLVVVGDGACGKTCLLIVFSKDEFP-EVYVPTVFENYVADIEVDGKQVELALWDTAGQEDYD-------RLRPLSYPDT 97 (207)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHSSCC--------CCEEEEEEEETTEEEEEEEEECTTCTTCT-------TTGGGGCTTC
T ss_pred cEEEEECcCCCCHHHHHHHHhcCCCC-CcCCCcccceEEEEEEECCEEEEEEEEECCCcHHHH-------HHHHhhcCCC
Confidence 58999999999999999999987643 34555555555556777874 57788999963211 1112235678
Q ss_pred hHHHHHHhcCCh
Q 018394 98 DIVLMVLDASKS 109 (356)
Q Consensus 98 d~i~~v~d~~~~ 109 (356)
|++++|+|...+
T Consensus 98 d~~i~v~d~~~~ 109 (207)
T 2fv8_A 98 DVILMCFSVDSP 109 (207)
T ss_dssp CEEEEEEETTCH
T ss_pred CEEEEEEECCCH
Confidence 888888877654
No 170
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=99.49 E-value=6.6e-14 Score=123.02 Aligned_cols=82 Identities=18% Similarity=0.258 Sum_probs=56.2
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcCCCCccccccccccccceEEEECCE--eecccCccccccccccCccccccccccccch
Q 018394 20 GRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDT--KIQLLDLPGIIEGASEGKGRGRQVIAVSKSS 97 (356)
Q Consensus 20 ~~v~LvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~--~i~~~D~pGl~~~~~~~~~~~~~~~~~~~~~ 97 (356)
..|+|+|.+|||||||+|.+++...+ ..+..|+.+.....+.+++. .+.++||||..... ......++.+
T Consensus 26 ~ki~vvG~~~~GKSsli~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~-------~~~~~~~~~~ 97 (201)
T 2gco_A 26 KKLVIVGDGACGKTCLLIVFSKDQFP-EVYVPTVFENYIADIEVDGKQVELALWDTAGQEDYD-------RLRPLSYPDT 97 (201)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSSCC-SSCCCSSCCCCEEEEEETTEEEEEEEECCCCSGGGT-------TTGGGGCTTC
T ss_pred eEEEEECCCCCCHHHHHHHHHhCcCC-cccCCcccceEEEEEEECCEEEEEEEEECCCchhHH-------HHHHHhcCCC
Confidence 58999999999999999999987643 33444444444456777775 67788999953211 1111235678
Q ss_pred hHHHHHHhcCCh
Q 018394 98 DIVLMVLDASKS 109 (356)
Q Consensus 98 d~i~~v~d~~~~ 109 (356)
|++++++|...+
T Consensus 98 d~~i~v~d~~~~ 109 (201)
T 2gco_A 98 DVILMCFSIDSP 109 (201)
T ss_dssp SEEEEEEETTCH
T ss_pred CEEEEEEECCCH
Confidence 888888777654
No 171
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=99.49 E-value=1.9e-14 Score=125.53 Aligned_cols=151 Identities=19% Similarity=0.192 Sum_probs=95.0
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcCCC--CccccccccccccceEEEEC--CEeecccCccccccccccCcccccccccccc
Q 018394 20 GRVALIGFPSVGKSTLLTLLTGTHS--EAASYEFTTLTCIPGIIHYN--DTKIQLLDLPGIIEGASEGKGRGRQVIAVSK 95 (356)
Q Consensus 20 ~~v~LvG~~gaGKSTLln~L~g~~~--~vs~~p~TT~~~~~G~i~~~--g~~i~~~D~pGl~~~~~~~~~~~~~~~~~~~ 95 (356)
..|+|+|++|||||||+|.|++... ...+.+++|.... .+.++ +..+.++||||..... ......++
T Consensus 24 ~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~i~Dt~G~~~~~-------~~~~~~~~ 94 (192)
T 2fg5_A 24 LKVCLLGDTGVGKSSIVCRFVQDHFDHNISPTIGASFMTK--TVPCGNELHKFLIWDTAGQERFH-------SLAPMYYR 94 (192)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHCCCCTTCCCCSSEEEEEE--EEECSSSEEEEEEEEECCSGGGG-------GGTHHHHT
T ss_pred eEEEEECcCCCCHHHHHHHHhcCCCCCCcCCCcceeEEEE--EEEeCCEEEEEEEEcCCCchhhH-------hhhHHhhc
Confidence 5899999999999999999998763 3445556554433 23333 3578889999953211 11122346
Q ss_pred chhHHHHHHhcCChHHHHHHHHHHHHHccCccccccCcccccceeccceeeeecCCCCCCCHHHHHHHHHHhcccCcEEE
Q 018394 96 SSDIVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNAEVL 175 (356)
Q Consensus 96 ~~d~i~~v~d~~~~~~~~~~i~~~L~~~~i~l~~~~~~lS~g~~qr~~ial~~DEp~~~LD~~~~~~il~~l~~~~~~i~ 175 (356)
.+|++++|+|...+... +.+..++ ..+..
T Consensus 95 ~~d~iilV~d~~~~~s~-~~~~~~~--------------------------------------------~~i~~------ 123 (192)
T 2fg5_A 95 GSAAAVIVYDITKQDSF-YTLKKWV--------------------------------------------KELKE------ 123 (192)
T ss_dssp TCSEEEEEEETTCTHHH-HHHHHHH--------------------------------------------HHHHH------
T ss_pred cCCEEEEEEeCCCHHHH-HHHHHHH--------------------------------------------HHHHH------
Confidence 67777788777654321 1111111 11110
Q ss_pred EccCCCHHHHHHHHhccccccceEEEeecCCCCCh-----hhHHHHhcC--CCEEEeccccccchHHHHHHHHHHhC
Q 018394 176 FREDATVDDLIDVIEGNRKYMKCVYVYNKIDVIGI-----DDVDKLARQ--PNSVVISCNLKLNLDRLLARMWEEMG 245 (356)
Q Consensus 176 ~thd~~~~~~~~~i~~~~~~~p~i~v~NK~Dl~~~-----~~~~~l~~~--~~~i~iSa~~~~~l~~L~~~i~~~l~ 245 (356)
. .....|+++|+||+|+... ++...+... .+++++||+++.|+++|.+.|.+.+.
T Consensus 124 -------------~--~~~~~piiiv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~ 185 (192)
T 2fg5_A 124 -------------H--GPENIVMAIAGNKCDLSDIREVPLKDAKEYAESIGAIVVETSAKNAINIEELFQGISRQIP 185 (192)
T ss_dssp -------------H--SCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHTTTCEEEECBTTTTBSHHHHHHHHHHTCC
T ss_pred -------------h--CCCCCcEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEeCCCCcCHHHHHHHHHHHHH
Confidence 0 0113599999999998632 233333322 34789999999999999999988663
No 172
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=99.48 E-value=1.7e-14 Score=124.63 Aligned_cols=53 Identities=28% Similarity=0.390 Sum_probs=44.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCccccccccccccceEEEECCEeecccCccccc
Q 018394 21 RVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGII 77 (356)
Q Consensus 21 ~v~LvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~~D~pGl~ 77 (356)
.|+++|++|||||||+|.+++....++..|++|+++... .+. .+.++||||+.
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~t~~~~~~--~~~--~~~l~Dt~G~~ 55 (190)
T 2cxx_A 3 TIIFAGRSNVGKSTLIYRLTGKKVRRGKRPGVTRKIIEI--EWK--NHKIIDMPGFG 55 (190)
T ss_dssp EEEEEEBTTSSHHHHHHHHHSCCCSSSSSTTCTTSCEEE--EET--TEEEEECCCBS
T ss_pred EEEEECCCCCCHHHHHHHHhCcCCccCCCCCccceeEEE--ecC--CEEEEECCCcc
Confidence 689999999999999999999887788889999876643 333 67789999963
No 173
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=99.48 E-value=3.1e-14 Score=125.32 Aligned_cols=152 Identities=14% Similarity=0.148 Sum_probs=92.6
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcCCCCccccccccccccceEEEECC--EeecccCccccccccccCccccccccccccch
Q 018394 20 GRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYND--TKIQLLDLPGIIEGASEGKGRGRQVIAVSKSS 97 (356)
Q Consensus 20 ~~v~LvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g--~~i~~~D~pGl~~~~~~~~~~~~~~~~~~~~~ 97 (356)
..|+|+|.+|||||||+|.|++........|.++.+.....+.+++ ..+.++||||..... ......++.+
T Consensus 30 ~ki~vvG~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~-------~~~~~~~~~~ 102 (201)
T 2hup_A 30 FKLVLVGDASVGKTCVVQRFKTGAFSERQGSTIGVDFTMKTLEIQGKRVKLQIWDTAGQERFR-------TITQSYYRSA 102 (201)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHSCC----------CEEEEEEEETTEEEEEEEECCTTCGGGH-------HHHHHHHTTC
T ss_pred eEEEEECcCCCCHHHHHHHHhhCCCCCCCCCCcceEEEEEEEEECCEEEEEEEEECCCcHhHH-------HHHHHHHhhC
Confidence 5899999999999999999998764322223334555567778887 478899999953211 1111234667
Q ss_pred hHHHHHHhcCChHHHHHHHHHHHHHccCccccccCcccccceeccceeeeecCCCCCCCHHHHHHHHHHhcccCcEEEEc
Q 018394 98 DIVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNAEVLFR 177 (356)
Q Consensus 98 d~i~~v~d~~~~~~~~~~i~~~L~~~~i~l~~~~~~lS~g~~qr~~ial~~DEp~~~LD~~~~~~il~~l~~~~~~i~~t 177 (356)
|++++|+|...... .+.+.. ++..+..
T Consensus 103 d~iilv~D~~~~~s-~~~~~~--------------------------------------------~~~~i~~-------- 129 (201)
T 2hup_A 103 NGAILAYDITKRSS-FLSVPH--------------------------------------------WIEDVRK-------- 129 (201)
T ss_dssp SEEEEEEETTBHHH-HHTHHH--------------------------------------------HHHHHHH--------
T ss_pred CEEEEEEECCCHHH-HHHHHH--------------------------------------------HHHHHHH--------
Confidence 77777777665322 111111 1111110
Q ss_pred cCCCHHHHHHHHhccccccceEEEeecCCCCCh-----hhHHHHhc---CCCEEEeccccccchHHHHHHHHHHh
Q 018394 178 EDATVDDLIDVIEGNRKYMKCVYVYNKIDVIGI-----DDVDKLAR---QPNSVVISCNLKLNLDRLLARMWEEM 244 (356)
Q Consensus 178 hd~~~~~~~~~i~~~~~~~p~i~v~NK~Dl~~~-----~~~~~l~~---~~~~i~iSa~~~~~l~~L~~~i~~~l 244 (356)
. .....|+++|+||+|+... ++...+.. ...++++||+++.|++++.+.|.+.+
T Consensus 130 -----------~--~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~~~l~~~i 191 (201)
T 2hup_A 130 -----------Y--AGSNIVQLLIGNKSDLSELREVSLAEAQSLAEHYDILCAIETSAKDSSNVEEAFLRVATEL 191 (201)
T ss_dssp -----------H--SCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCSEEEECBTTTTBSHHHHHHHHHHHH
T ss_pred -----------h--cCCCCCEEEEEECCccccccccCHHHHHHHHHHcCCCEEEEEeCCCCCCHHHHHHHHHHHH
Confidence 0 0123699999999998642 23333332 22578999999999999999887765
No 174
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=99.48 E-value=9.2e-14 Score=121.81 Aligned_cols=152 Identities=18% Similarity=0.166 Sum_probs=94.6
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcCCCCccccccccccccceEEEECC--EeecccCccccccccccCccccccccccccch
Q 018394 20 GRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYND--TKIQLLDLPGIIEGASEGKGRGRQVIAVSKSS 97 (356)
Q Consensus 20 ~~v~LvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g--~~i~~~D~pGl~~~~~~~~~~~~~~~~~~~~~ 97 (356)
..|+|+|++|||||||+|.|++........|..+.+.....+.+++ ..+.++||||..... ......++.+
T Consensus 9 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~-------~~~~~~~~~~ 81 (203)
T 1zbd_A 9 FKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGLERYR-------TITTAYYRGA 81 (203)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTCCCCSCCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGH-------HHHHTTGGGC
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCCcCCccceeEEEEEEEECCeEEEEEEEECCCchhhc-------chHHHhhcCC
Confidence 4799999999999999999998764333333333333444556665 467889999964321 1122335677
Q ss_pred hHHHHHHhcCChHHHHHHHHHHHHHccCccccccCcccccceeccceeeeecCCCCCCCHHHHHHHHHHhcccCcEEEEc
Q 018394 98 DIVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNAEVLFR 177 (356)
Q Consensus 98 d~i~~v~d~~~~~~~~~~i~~~L~~~~i~l~~~~~~lS~g~~qr~~ial~~DEp~~~LD~~~~~~il~~l~~~~~~i~~t 177 (356)
|++++|+|...+.. .+.+..++ ..+..
T Consensus 82 d~ii~v~d~~~~~s-~~~~~~~~--------------------------------------------~~i~~-------- 108 (203)
T 1zbd_A 82 MGFILMYDITNEES-FNAVQDWS--------------------------------------------TQIKT-------- 108 (203)
T ss_dssp SEEEEEEETTCHHH-HHHHHHHH--------------------------------------------HHHHH--------
T ss_pred CEEEEEEECcCHHH-HHHHHHHH--------------------------------------------HHHHH--------
Confidence 88888888766432 11111111 11100
Q ss_pred cCCCHHHHHHHHhccccccceEEEeecCCCCCh-----hhHHHHhc--CCCEEEeccccccchHHHHHHHHHHh
Q 018394 178 EDATVDDLIDVIEGNRKYMKCVYVYNKIDVIGI-----DDVDKLAR--QPNSVVISCNLKLNLDRLLARMWEEM 244 (356)
Q Consensus 178 hd~~~~~~~~~i~~~~~~~p~i~v~NK~Dl~~~-----~~~~~l~~--~~~~i~iSa~~~~~l~~L~~~i~~~l 244 (356)
. .....|+++|+||+|+... ++...+.. ..+++++||++|.|++++.+.+.+.+
T Consensus 109 -----------~--~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i 169 (203)
T 1zbd_A 109 -----------Y--SWDNAQVLLVGNKCDMEDERVVSSERGRQLADHLGFEFFEASAKDNINVKQTFERLVDVI 169 (203)
T ss_dssp -----------H--SCSSCEEEEEEECTTCTTSCCSCHHHHHHHHHHHTCEEEECBTTTTBSSHHHHHHHHHHH
T ss_pred -----------h--cCCCCCEEEEEECcccCcccccCHHHHHHHHHHCCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 0 0123699999999999743 22233322 23588999999999999888887654
No 175
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=99.47 E-value=3.3e-15 Score=128.84 Aligned_cols=55 Identities=11% Similarity=-0.035 Sum_probs=41.3
Q ss_pred ccCcccccceecccee---------eeecCCCCCCCHH----------------HHHHHHHH---hc-ccCcEEEEccCC
Q 018394 130 RPPQIYFKKKKTGGIS---------FNSTLPLTHVDEK----------------LCYQILHE---YK-IHNAEVLFREDA 180 (356)
Q Consensus 130 ~~~~lS~g~~qr~~ia---------l~~DEp~~~LD~~----------------~~~~il~~---l~-~~~~~i~~thd~ 180 (356)
.....|+|++||+.|| +++||||++||+. ...++++. +. .+.++|++|||+
T Consensus 80 ~~~~~s~g~~qrv~iAral~~~p~~lllDEPt~~Ld~~~~~R~~~~~~~~vi~~~~~~l~~~l~~l~~~g~tvi~vtH~~ 159 (171)
T 4gp7_A 80 ATNVQESARKPLIEMAKDYHCFPVAVVFNLPEKVCQERNKNRTDRQVEEYVIRKHTQQMKKSIKGLQREGFRYVYILNSP 159 (171)
T ss_dssp SCCCSHHHHHHHHHHHHHTTCEEEEEEECCCHHHHHHHHHTCSSCCCCHHHHHHHHHHHHHHSTTHHHHTCSEEEEECSH
T ss_pred CCCCCHHHHHHHHHHHHHcCCcEEEEEEeCCHHHHHHHHhcccCCCCCHHHHHHHHHHhhhhhhhHHhcCCcEEEEeCCH
Confidence 3445699999999988 8999999999998 43444444 32 345999999997
Q ss_pred CHHH
Q 018394 181 TVDD 184 (356)
Q Consensus 181 ~~~~ 184 (356)
+..+
T Consensus 160 ~~~~ 163 (171)
T 4gp7_A 160 EEVE 163 (171)
T ss_dssp HHHH
T ss_pred HHhh
Confidence 6543
No 176
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=99.47 E-value=2.2e-14 Score=127.21 Aligned_cols=153 Identities=16% Similarity=0.132 Sum_probs=95.8
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcCCCCccccccccccccceEEEECC------------EeecccCccccccccccCcccc
Q 018394 20 GRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYND------------TKIQLLDLPGIIEGASEGKGRG 87 (356)
Q Consensus 20 ~~v~LvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g------------~~i~~~D~pGl~~~~~~~~~~~ 87 (356)
..|+|+|++|||||||+|.|++........|.++.+.....+.+++ ..+.++||||.....
T Consensus 26 ~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~------- 98 (217)
T 2f7s_A 26 IKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGKAFKVHLQLWDTAGQERFR------- 98 (217)
T ss_dssp EEEEEESCTTSSHHHHHHHHHCSCCCCEEEEEEEEEEEEEEEEEEC-------CCEEEEEEEEEEEESHHHHH-------
T ss_pred EEEEEECcCCCCHHHHHHHHhcCCCCcCCCCceeEEEEEEEEEECCccccccccCceeEEEEEEECCCcHhHH-------
Confidence 4799999999999999999998765433334444444455566653 468889999953211
Q ss_pred ccccccccchhHHHHHHhcCChHHHHHHHHHHHHHccCccccccCcccccceeccceeeeecCCCCCCCHHHHHHHHHHh
Q 018394 88 RQVIAVSKSSDIVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEY 167 (356)
Q Consensus 88 ~~~~~~~~~~d~i~~v~d~~~~~~~~~~i~~~L~~~~i~l~~~~~~lS~g~~qr~~ial~~DEp~~~LD~~~~~~il~~l 167 (356)
......++.+|++++|+|...... .+.+..++.. +
T Consensus 99 ~~~~~~~~~~d~iilV~D~~~~~s-~~~~~~~l~~--------------------------------------------i 133 (217)
T 2f7s_A 99 SLTTAFFRDAMGFLLMFDLTSQQS-FLNVRNWMSQ--------------------------------------------L 133 (217)
T ss_dssp HHHHHHHTTCCEEEEEEETTCHHH-HHHHHHHHHT--------------------------------------------C
T ss_pred hHHHHHhcCCCEEEEEEECcCHHH-HHHHHHHHHH--------------------------------------------H
Confidence 111223466777777877765432 1122222211 1
Q ss_pred cccCcEEEEccCCCHHHHHHHHhccccccceEEEeecCCCCCh-----hhHHHHhc--CCCEEEeccccccchHHHHHHH
Q 018394 168 KIHNAEVLFREDATVDDLIDVIEGNRKYMKCVYVYNKIDVIGI-----DDVDKLAR--QPNSVVISCNLKLNLDRLLARM 240 (356)
Q Consensus 168 ~~~~~~i~~thd~~~~~~~~~i~~~~~~~p~i~v~NK~Dl~~~-----~~~~~l~~--~~~~i~iSa~~~~~l~~L~~~i 240 (356)
... ......|+++|+||+|+... ++...+.. ...++++||+++.|+++|.+.+
T Consensus 134 ~~~--------------------~~~~~~piilV~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l 193 (217)
T 2f7s_A 134 QAN--------------------AYCENPDIVLIGNKADLPDQREVNERQARELADKYGIPYFETSAATGQNVEKAVETL 193 (217)
T ss_dssp CCC--------------------CTTTCCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCCEEEEBTTTTBTHHHHHHHH
T ss_pred HHh--------------------cCcCCCCEEEEEECCccccccccCHHHHHHHHHHCCCcEEEEECCCCCCHHHHHHHH
Confidence 100 00023699999999998642 22333332 2358999999999999998888
Q ss_pred HHHh
Q 018394 241 WEEM 244 (356)
Q Consensus 241 ~~~l 244 (356)
.+.+
T Consensus 194 ~~~i 197 (217)
T 2f7s_A 194 LDLI 197 (217)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 7654
No 177
>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}
Probab=99.47 E-value=1.8e-14 Score=140.90 Aligned_cols=61 Identities=5% Similarity=-0.109 Sum_probs=45.7
Q ss_pred ccccceecccee-----------eeecCCCCCCCHHHHHHHHHH---hcccCcEEEEccCCCHHHHHHHHhccccccceE
Q 018394 134 IYFKKKKTGGIS-----------FNSTLPLTHVDEKLCYQILHE---YKIHNAEVLFREDATVDDLIDVIEGNRKYMKCV 199 (356)
Q Consensus 134 lS~g~~qr~~ia-----------l~~DEp~~~LD~~~~~~il~~---l~~~~~~i~~thd~~~~~~~~~i~~~~~~~p~i 199 (356)
+|+||+||+.|| +++||||++||+.....+++. +..+.++|++||+..+.+ .+..+
T Consensus 296 lSgGe~qrl~lA~~l~~~~~~~~LlLDEpt~~LD~~~~~~l~~~L~~l~~~~~vi~itH~~~~~~----------~~d~i 365 (415)
T 4aby_A 296 ASGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAEQLSRLADTRQVLVVTHLAQIAA----------RAHHH 365 (415)
T ss_dssp SCHHHHHHHHHHHHHHHCCSSSEEEESSTTTTCCHHHHHHHHHHHHHHTTTSEEEEECSCHHHHT----------TCSEE
T ss_pred cCHhHHHHHHHHHHHHhCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHhCCCEEEEEeCcHHHHh----------hcCeE
Confidence 699999999887 788999999999986655554 443569999999953322 23667
Q ss_pred EEeec
Q 018394 200 YVYNK 204 (356)
Q Consensus 200 ~v~NK 204 (356)
+++.|
T Consensus 366 ~~l~k 370 (415)
T 4aby_A 366 YKVEK 370 (415)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 77754
No 178
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=99.47 E-value=3.8e-14 Score=125.29 Aligned_cols=151 Identities=15% Similarity=0.167 Sum_probs=99.8
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcCCCCccccccccccccceEEEECCE--eecccCccccccccccCccccccccccccch
Q 018394 20 GRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDT--KIQLLDLPGIIEGASEGKGRGRQVIAVSKSS 97 (356)
Q Consensus 20 ~~v~LvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~--~i~~~D~pGl~~~~~~~~~~~~~~~~~~~~~ 97 (356)
..|+|+|.+|||||||++.+++... ..+++.|+.+.....+.+++. .+.++||||..... . .....++.+
T Consensus 10 ~ki~i~G~~~~GKTsli~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~----~---~~~~~~~~~ 81 (212)
T 2j0v_A 10 IKCVTVGDGAVGKTCMLICYTSNKF-PTDYIPTVFDNFSANVAVDGQIVNLGLWDTAGQEDYS----R---LRPLSYRGA 81 (212)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSCC-CSSCCCSSCCCEEEEEECSSCEEEEEEECCCCCCCCC----C-----CGGGTTC
T ss_pred EEEEEECCCCCCHHHHHHHHhcCCC-CccCCCccceeEEEEEEECCEEEEEEEEECCCcHHHH----H---HHHhhccCC
Confidence 5899999999999999999997653 456777877777677777774 67889999963211 1 111235678
Q ss_pred hHHHHHHhcCChHHHHHHHHHHHHHccCccccccCcccccceeccceeeeecCCCCCCCHHHHHHHHHHhcccCcEEEEc
Q 018394 98 DIVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNAEVLFR 177 (356)
Q Consensus 98 d~i~~v~d~~~~~~~~~~i~~~L~~~~i~l~~~~~~lS~g~~qr~~ial~~DEp~~~LD~~~~~~il~~l~~~~~~i~~t 177 (356)
|++++|+|...+.........++ ..+.
T Consensus 82 d~~ilv~d~~~~~s~~~~~~~~~--------------------------------------------~~~~--------- 108 (212)
T 2j0v_A 82 DIFVLAFSLISKASYENVLKKWM--------------------------------------------PELR--------- 108 (212)
T ss_dssp SEEEEEEETTCHHHHHHHHHTHH--------------------------------------------HHHH---------
T ss_pred CEEEEEEECCCHHHHHHHHHHHH--------------------------------------------HHHH---------
Confidence 88888888766432111100111 1110
Q ss_pred cCCCHHHHHHHHhccccccceEEEeecCCCCChh-------------hHHHHh---cCCCEEEeccccccchHHHHHHHH
Q 018394 178 EDATVDDLIDVIEGNRKYMKCVYVYNKIDVIGID-------------DVDKLA---RQPNSVVISCNLKLNLDRLLARMW 241 (356)
Q Consensus 178 hd~~~~~~~~~i~~~~~~~p~i~v~NK~Dl~~~~-------------~~~~l~---~~~~~i~iSa~~~~~l~~L~~~i~ 241 (356)
......|+++|+||+|+.... +...+. ...+++++||++|.|++++.+.+.
T Consensus 109 -------------~~~~~~piilv~nK~Dl~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~ 175 (212)
T 2j0v_A 109 -------------RFAPNVPIVLVGTKLDLRDDKGYLADHTNVITSTQGEELRKQIGAAAYIECSSKTQQNVKAVFDTAI 175 (212)
T ss_dssp -------------HHCTTCCEEEEEECHHHHTCHHHHHTCSSCCCHHHHHHHHHHHTCSEEEECCTTTCTTHHHHHHHHH
T ss_pred -------------HhCCCCCEEEEEeCHHhhhCccccccccCCCCHHHHHHHHHHcCCceEEEccCCCCCCHHHHHHHHH
Confidence 000135999999999986432 222222 123588999999999999999988
Q ss_pred HHh
Q 018394 242 EEM 244 (356)
Q Consensus 242 ~~l 244 (356)
+.+
T Consensus 176 ~~~ 178 (212)
T 2j0v_A 176 KVV 178 (212)
T ss_dssp HHH
T ss_pred HHH
Confidence 765
No 179
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=99.47 E-value=4.7e-14 Score=119.18 Aligned_cols=152 Identities=14% Similarity=0.156 Sum_probs=91.3
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcCCCCccccccccccccceEEEECC--EeecccCccccccccccCccccccccccccch
Q 018394 20 GRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYND--TKIQLLDLPGIIEGASEGKGRGRQVIAVSKSS 97 (356)
Q Consensus 20 ~~v~LvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g--~~i~~~D~pGl~~~~~~~~~~~~~~~~~~~~~ 97 (356)
..|+++|++|||||||+|.|++........|..+.+.....+.+++ ..+.++|+||..... ......++.+
T Consensus 7 ~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~-------~~~~~~~~~~ 79 (170)
T 1r2q_A 7 FKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYH-------SLAPMYYRGA 79 (170)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGG-------GGHHHHHTTC
T ss_pred EEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCcHHhh-------hhhHHhccCC
Confidence 5899999999999999999997653211112222222233455554 467889999953211 1112234667
Q ss_pred hHHHHHHhcCChHHHHHHHHHHHHHccCccccccCcccccceeccceeeeecCCCCCCCHHHHHHHHHHhcccCcEEEEc
Q 018394 98 DIVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNAEVLFR 177 (356)
Q Consensus 98 d~i~~v~d~~~~~~~~~~i~~~L~~~~i~l~~~~~~lS~g~~qr~~ial~~DEp~~~LD~~~~~~il~~l~~~~~~i~~t 177 (356)
|++++++|...+.. .+.+..++ ..+.
T Consensus 80 d~~i~v~d~~~~~s-~~~~~~~~--------------------------------------------~~~~--------- 105 (170)
T 1r2q_A 80 QAAIVVYDITNEES-FARAKNWV--------------------------------------------KELQ--------- 105 (170)
T ss_dssp SEEEEEEETTCHHH-HHHHHHHH--------------------------------------------HHHH---------
T ss_pred CEEEEEEECCCHHH-HHHHHHHH--------------------------------------------HHHH---------
Confidence 77777877765432 11111111 1110
Q ss_pred cCCCHHHHHHHHhccccccceEEEeecCCCCCh-----hhHHHHhc--CCCEEEeccccccchHHHHHHHHHHh
Q 018394 178 EDATVDDLIDVIEGNRKYMKCVYVYNKIDVIGI-----DDVDKLAR--QPNSVVISCNLKLNLDRLLARMWEEM 244 (356)
Q Consensus 178 hd~~~~~~~~~i~~~~~~~p~i~v~NK~Dl~~~-----~~~~~l~~--~~~~i~iSa~~~~~l~~L~~~i~~~l 244 (356)
.......|+++|.||+|+... ++...+.. ...++++||++|.|+++|.+.|.+.+
T Consensus 106 ------------~~~~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~i~~~~ 167 (170)
T 1r2q_A 106 ------------RQASPNIVIALSGNKADLANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKL 167 (170)
T ss_dssp ------------HHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHHHHTS
T ss_pred ------------HhcCCCCcEEEEEECccCccccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHHH
Confidence 000113588999999998642 22333322 23478899999999999999998765
No 180
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=99.47 E-value=8e-14 Score=116.91 Aligned_cols=152 Identities=18% Similarity=0.180 Sum_probs=93.6
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcCCCCccccccccccccceEEEECCEe--ecccCccccccccccCccccccccccccch
Q 018394 20 GRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTK--IQLLDLPGIIEGASEGKGRGRQVIAVSKSS 97 (356)
Q Consensus 20 ~~v~LvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~--i~~~D~pGl~~~~~~~~~~~~~~~~~~~~~ 97 (356)
..|+++|++|||||||+|.|++.. ....++.|+.+.....+.+++.. +.++|+||..... ......++.+
T Consensus 4 ~~i~v~G~~~~GKssl~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~-------~~~~~~~~~~ 75 (166)
T 2ce2_X 4 YKLVVVGAGGVGKSALTIQLIQNH-FVDECDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYS-------AMRDQYMRTG 75 (166)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSS-CCSCCCTTCCEEEEEEEEETTEEEEEEEEECCCCSSCC-------HHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHHhCc-CccccCCccceEEEEEEEECCEEEEEEEEECCCchhhh-------HHHHHhhccC
Confidence 479999999999999999999864 33456677766666677777754 6779999853211 0011122345
Q ss_pred hHHHHHHhcCChHHHHHHHHHHHHHccCccccccCcccccceeccceeeeecCCCCCCCHHHHHHHHHHhcccCcEEEEc
Q 018394 98 DIVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNAEVLFR 177 (356)
Q Consensus 98 d~i~~v~d~~~~~~~~~~i~~~L~~~~i~l~~~~~~lS~g~~qr~~ial~~DEp~~~LD~~~~~~il~~l~~~~~~i~~t 177 (356)
|.+++++|...... .+.+.. ++..+.
T Consensus 76 ~~~i~v~d~~~~~~-~~~~~~--------------------------------------------~~~~i~--------- 101 (166)
T 2ce2_X 76 EGFLCVFAINNTKS-FEDIHQ--------------------------------------------YREQIK--------- 101 (166)
T ss_dssp SEEEEEEETTCHHH-HHHHHH--------------------------------------------HHHHHH---------
T ss_pred CEEEEEEECCCHHH-HHHHHH--------------------------------------------HHHHHH---------
Confidence 55555555544321 111111 111110
Q ss_pred cCCCHHHHHHHHhccccccceEEEeecCCCCCh----hhHHHHhc--CCCEEEeccccccchHHHHHHHHHHh
Q 018394 178 EDATVDDLIDVIEGNRKYMKCVYVYNKIDVIGI----DDVDKLAR--QPNSVVISCNLKLNLDRLLARMWEEM 244 (356)
Q Consensus 178 hd~~~~~~~~~i~~~~~~~p~i~v~NK~Dl~~~----~~~~~l~~--~~~~i~iSa~~~~~l~~L~~~i~~~l 244 (356)
... .....|+++|+||+|+... ++...+.+ ..+++++||+++.|++++.+.+.+.+
T Consensus 102 ---------~~~--~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~ 163 (166)
T 2ce2_X 102 ---------RVK--DSDDVPMVLVGNKSDLAARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163 (166)
T ss_dssp ---------HHH--TCSCCCEEEEEECTTCSCCCSCHHHHHHHHHHHTCCEEEECTTTCTTHHHHHHHHHHHH
T ss_pred ---------Hhc--CCCCCcEEEEEEchhhhhcccCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHHHHH
Confidence 000 0113699999999998752 22333322 24689999999999999999887754
No 181
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=99.47 E-value=7.5e-15 Score=130.88 Aligned_cols=128 Identities=15% Similarity=0.041 Sum_probs=72.4
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHcCCCCccccccccccccceEEEECCEeecccCccccccccccCccccccccccccchh
Q 018394 19 HGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQVIAVSKSSD 98 (356)
Q Consensus 19 g~~v~LvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~~D~pGl~~~~~~~~~~~~~~~~~~~~~d 98 (356)
|++++|+|||||||||||++|+|. .| ..|.+.. ..+.. +.. .....+++..|.. .+
T Consensus 22 Ge~~~liG~nGsGKSTLl~~l~Gl-~p-----------~~G~I~~--~~~~~-~~~----~~~~~ig~v~q~~-----~e 77 (208)
T 3b85_A 22 NTIVFGLGPAGSGKTYLAMAKAVQ-AL-----------QSKQVSR--IILTR-PAV----EAGEKLGFLPGTL-----NE 77 (208)
T ss_dssp CSEEEEECCTTSSTTHHHHHHHHH-HH-----------HTTSCSE--EEEEE-CSC----CTTCCCCSSCC---------
T ss_pred CCEEEEECCCCCCHHHHHHHHhcC-CC-----------cCCeeee--EEecC-Cch----hhhcceEEecCCH-----HH
Confidence 689999999999999999999999 66 5666521 11110 100 0112233333322 11
Q ss_pred HH-HH---HHhcCChHHHHHHHHHHHHHccCccccccCcccccceecccee---------eeecCCCCCCCHHHHHHHHH
Q 018394 99 IV-LM---VLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGIS---------FNSTLPLTHVDEKLCYQILH 165 (356)
Q Consensus 99 ~i-~~---v~d~~~~~~~~~~i~~~L~~~~i~l~~~~~~lS~g~~qr~~ia---------l~~DEp~~~LD~~~~~~il~ 165 (356)
.+ .+ +.+........+.+.+.++. ++ ||+||++|| +++||||++ ....+.+++.
T Consensus 78 nl~~~~~~~~~~~~~~~~~~~~~~~l~~-gl-----------Gq~qrv~lAraL~~~p~lllLDEPts~-~~~~l~~~l~ 144 (208)
T 3b85_A 78 KIDPYLRPLHDALRDMVEPEVIPKLMEA-GI-----------VEVAPLAYMRGRTLNDAFVILDEAQNT-TPAQMKMFLT 144 (208)
T ss_dssp --CTTTHHHHHHHTTTSCTTHHHHHHHT-TS-----------EEEEEGGGGTTCCBCSEEEEECSGGGC-CHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHh-CC-----------chHHHHHHHHHHhcCCCEEEEeCCccc-cHHHHHHHHH
Confidence 11 01 01100000011234445544 33 999999998 999999999 6666777777
Q ss_pred HhcccCcEEEEccCCCHHH
Q 018394 166 EYKIHNAEVLFREDATVDD 184 (356)
Q Consensus 166 ~l~~~~~~i~~thd~~~~~ 184 (356)
.+..+.+++ +|||....+
T Consensus 145 ~l~~g~tii-vtHd~~~~~ 162 (208)
T 3b85_A 145 RLGFGSKMV-VTGDITQVD 162 (208)
T ss_dssp TBCTTCEEE-EEEC-----
T ss_pred HhcCCCEEE-EECCHHHHh
Confidence 773345777 999986544
No 182
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=99.46 E-value=6.8e-14 Score=119.80 Aligned_cols=148 Identities=16% Similarity=0.155 Sum_probs=93.2
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcCCCCccccccccccccceEEEECCE--eecccCccccccccccCccccccccccccch
Q 018394 20 GRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDT--KIQLLDLPGIIEGASEGKGRGRQVIAVSKSS 97 (356)
Q Consensus 20 ~~v~LvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~--~i~~~D~pGl~~~~~~~~~~~~~~~~~~~~~ 97 (356)
..|+++|.+|||||||+|.+++..... +..|+.+.....+.+++. .+.++||||... ...++.+
T Consensus 8 ~ki~~vG~~~vGKTsli~~l~~~~~~~--~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~------------~~~~~~~ 73 (178)
T 2iwr_A 8 LRLGVLGDARSGKSSLIHRFLTGSYQV--LEKTESEQYKKEMLVDGQTHLVLIREEAGAPD------------AKFSGWA 73 (178)
T ss_dssp EEEEEECCGGGCHHHHHHHHHHSCCCC--CSSCSSSEEEEEEEETTEEEEEEEEECSSSCC------------HHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCC--cCCCcceeEEEEEEECCEEEEEEEEECCCCch------------hHHHHhC
Confidence 589999999999999999999865432 333444445566777775 467789998532 1224567
Q ss_pred hHHHHHHhcCChHHHHHHHHHHHHHccCccccccCcccccceeccceeeeecCCCCCCCHHHHHHHHHHhcccCcEEEEc
Q 018394 98 DIVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNAEVLFR 177 (356)
Q Consensus 98 d~i~~v~d~~~~~~~~~~i~~~L~~~~i~l~~~~~~lS~g~~qr~~ial~~DEp~~~LD~~~~~~il~~l~~~~~~i~~t 177 (356)
|++++|+|...+.. .+.+..+++ .+..+.
T Consensus 74 d~~ilv~D~~~~~s-~~~~~~~~~-----------------------------------------~i~~~~--------- 102 (178)
T 2iwr_A 74 DAVIFVFSLEDENS-FQAVSRLHG-----------------------------------------QLSSLR--------- 102 (178)
T ss_dssp SEEEEEEETTCHHH-HHHHHHHHH-----------------------------------------HHHHHH---------
T ss_pred CEEEEEEECcCHHH-HHHHHHHHH-----------------------------------------HHHHHH---------
Confidence 77777877766432 111221111 111110
Q ss_pred cCCCHHHHHHHHhccccccceEEEeecCCCC-------ChhhHHHHhc---CCCEEEeccccccchHHHHHHHHHHh
Q 018394 178 EDATVDDLIDVIEGNRKYMKCVYVYNKIDVI-------GIDDVDKLAR---QPNSVVISCNLKLNLDRLLARMWEEM 244 (356)
Q Consensus 178 hd~~~~~~~~~i~~~~~~~p~i~v~NK~Dl~-------~~~~~~~l~~---~~~~i~iSa~~~~~l~~L~~~i~~~l 244 (356)
.......|+++|.||+|+. ..++...+.. ..+++++||++|.|++++.+.+.+.+
T Consensus 103 ------------~~~~~~~piilv~nK~Dl~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~lf~~l~~~~ 167 (178)
T 2iwr_A 103 ------------GEGRGGLALALVGTQDRISASSPRVVGDARARALXADMKRCSYYETXATYGLNVDRVFQEVAQKV 167 (178)
T ss_dssp ------------CSSSCCCEEEEEEECTTCBTTBCCCSCHHHHHHHHHHHSSEEEEEEBTTTTBTHHHHHHHHHHHH
T ss_pred ------------hcCCCCCCEEEEEECccccccccCcCCHHHHHHHHHhhcCCeEEEEeccccCCHHHHHHHHHHHH
Confidence 0001246999999999983 2233333322 23578999999999999988887654
No 183
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=99.46 E-value=7.6e-14 Score=121.36 Aligned_cols=152 Identities=20% Similarity=0.168 Sum_probs=91.6
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcCCCCccccccccccccceEEEECC--EeecccCccccccccccCccccccccccccch
Q 018394 20 GRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYND--TKIQLLDLPGIIEGASEGKGRGRQVIAVSKSS 97 (356)
Q Consensus 20 ~~v~LvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g--~~i~~~D~pGl~~~~~~~~~~~~~~~~~~~~~ 97 (356)
..|+|+|++|||||||+|.|++........|..+.+.....+.+++ ..+.++||||..... ......++.+
T Consensus 26 ~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~-------~~~~~~~~~~ 98 (193)
T 2oil_A 26 FKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTAAVKAQIWDTAGLERYR-------AITSAYYRGA 98 (193)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHSCCCSSCCCCSSEEEEEEEEEETTEEEEEEEEEESCCCTTC-------TTHHHHHTTC
T ss_pred eEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCCchhhh-------hhhHHHhccC
Confidence 4799999999999999999998764322222222222333445544 467889999963211 1112234667
Q ss_pred hHHHHHHhcCChHHHHHHHHHHHHHccCccccccCcccccceeccceeeeecCCCCCCCHHHHHHHHHHhcccCcEEEEc
Q 018394 98 DIVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNAEVLFR 177 (356)
Q Consensus 98 d~i~~v~d~~~~~~~~~~i~~~L~~~~i~l~~~~~~lS~g~~qr~~ial~~DEp~~~LD~~~~~~il~~l~~~~~~i~~t 177 (356)
|++++|+|...+... +.+..+ +..+..
T Consensus 99 d~vi~v~D~~~~~s~-~~~~~~--------------------------------------------l~~i~~-------- 125 (193)
T 2oil_A 99 VGALLVFDLTKHQTY-AVVERW--------------------------------------------LKELYD-------- 125 (193)
T ss_dssp CEEEEEEETTCHHHH-HTHHHH--------------------------------------------HHHHHT--------
T ss_pred CEEEEEEECCCHHHH-HHHHHH--------------------------------------------HHHHHH--------
Confidence 777777777654221 111111 111110
Q ss_pred cCCCHHHHHHHHhccccccceEEEeecCCCCCh-----hhHHHHhc--CCCEEEeccccccchHHHHHHHHHHh
Q 018394 178 EDATVDDLIDVIEGNRKYMKCVYVYNKIDVIGI-----DDVDKLAR--QPNSVVISCNLKLNLDRLLARMWEEM 244 (356)
Q Consensus 178 hd~~~~~~~~~i~~~~~~~p~i~v~NK~Dl~~~-----~~~~~l~~--~~~~i~iSa~~~~~l~~L~~~i~~~l 244 (356)
......|+++|+||+|+... ++...+.. ...++++||+++.|++++.+.|.+.+
T Consensus 126 -------------~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i 186 (193)
T 2oil_A 126 -------------HAEATIVVMLVGNKSDLSQAREVPTEEARMFAENNGLLFLETSALDSTNVELAFETVLKEI 186 (193)
T ss_dssp -------------TSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEEECTTTCTTHHHHHHHHHHHH
T ss_pred -------------hcCCCCeEEEEEECCCcccccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHH
Confidence 00123589999999998643 22333322 23478999999999999998887654
No 184
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=99.46 E-value=7.7e-14 Score=118.99 Aligned_cols=151 Identities=19% Similarity=0.170 Sum_probs=93.1
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcCCCCccccccc-cccccceEEEECCE--eecccCccccccccccCccccccccccccc
Q 018394 20 GRVALIGFPSVGKSTLLTLLTGTHSEAASYEFT-TLTCIPGIIHYNDT--KIQLLDLPGIIEGASEGKGRGRQVIAVSKS 96 (356)
Q Consensus 20 ~~v~LvG~~gaGKSTLln~L~g~~~~vs~~p~T-T~~~~~G~i~~~g~--~i~~~D~pGl~~~~~~~~~~~~~~~~~~~~ 96 (356)
..|+++|.+|||||||+|.|++.... ..++.| +.+.....+.+++. .+.++||||..... ......++.
T Consensus 16 ~~i~v~G~~~~GKSsli~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~-------~~~~~~~~~ 87 (179)
T 1z0f_A 16 FKYIIIGDMGVGKSCLLHQFTEKKFM-ADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFR-------AVTRSYYRG 87 (179)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSCCC-SSCTTSCCCCEEEEEEEETTEEEEEEEEECTTGGGTC-------HHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCC-CCCCCccceEEEEEEEEECCeEEEEEEEECCCChHhh-------hhHHHHhcc
Confidence 58999999999999999999987643 333333 33334455666664 67889999953211 111223456
Q ss_pred hhHHHHHHhcCChHHHHHHHHHHHHHccCccccccCcccccceeccceeeeecCCCCCCCHHHHHHHHHHhcccCcEEEE
Q 018394 97 SDIVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNAEVLF 176 (356)
Q Consensus 97 ~d~i~~v~d~~~~~~~~~~i~~~L~~~~i~l~~~~~~lS~g~~qr~~ial~~DEp~~~LD~~~~~~il~~l~~~~~~i~~ 176 (356)
+|++++++|....... +.+.. ++..+.
T Consensus 88 ~d~~i~v~d~~~~~s~-~~~~~--------------------------------------------~~~~~~-------- 114 (179)
T 1z0f_A 88 AAGALMVYDITRRSTY-NHLSS--------------------------------------------WLTDAR-------- 114 (179)
T ss_dssp CSEEEEEEETTCHHHH-HTHHH--------------------------------------------HHHHHH--------
T ss_pred CCEEEEEEeCcCHHHH-HHHHH--------------------------------------------HHHHHH--------
Confidence 6777777776654221 11111 111111
Q ss_pred ccCCCHHHHHHHHhccccccceEEEeecCCCCCh-----hhHHHHhc--CCCEEEeccccccchHHHHHHHHHHh
Q 018394 177 REDATVDDLIDVIEGNRKYMKCVYVYNKIDVIGI-----DDVDKLAR--QPNSVVISCNLKLNLDRLLARMWEEM 244 (356)
Q Consensus 177 thd~~~~~~~~~i~~~~~~~p~i~v~NK~Dl~~~-----~~~~~l~~--~~~~i~iSa~~~~~l~~L~~~i~~~l 244 (356)
.. .....|+++|+||+|+... ++...+.. ...++++||+++.|++++.+.+.+.+
T Consensus 115 -----------~~--~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i 176 (179)
T 1z0f_A 115 -----------NL--TNPNTVIILIGNKADLEAQRDVTYEEAKQFAEENGLLFLEASAKTGENVEDAFLEAAKKI 176 (179)
T ss_dssp -----------HH--SCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred -----------Hh--cCCCCcEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHH
Confidence 00 0123589999999998632 22333322 23578999999999999999887755
No 185
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=99.46 E-value=1.1e-13 Score=119.01 Aligned_cols=152 Identities=19% Similarity=0.213 Sum_probs=96.9
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcCCCCccccccccccccceEEEECCEee--cccCccccccccccCccccccccccccch
Q 018394 20 GRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKI--QLLDLPGIIEGASEGKGRGRQVIAVSKSS 97 (356)
Q Consensus 20 ~~v~LvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i--~~~D~pGl~~~~~~~~~~~~~~~~~~~~~ 97 (356)
..|+|+|++|||||||+|.|++.. ...+++.|+.+.....+.+++..+ .++|+||..... . .....++.+
T Consensus 19 ~ki~v~G~~~~GKSsl~~~l~~~~-~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~----~---~~~~~~~~~ 90 (183)
T 3kkq_A 19 YKLVVVGDGGVGKSALTIQFFQKI-FVDDYDPTIEDSYLKHTEIDNQWAILDVLDTAGQEEFS----A---MREQYMRTG 90 (183)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSC-CCSCCCTTCCEEEEEEEEETTEEEEEEEEECCSCGGGC----S---SHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHHhCC-CCCCCCCCccceeEEEEEeCCcEEEEEEEECCCchhhH----H---HHHHHHhcC
Confidence 589999999999999999999764 345666676666677778888754 459999953211 0 111224556
Q ss_pred hHHHHHHhcCChHHHHHHHHHHHHHccCccccccCcccccceeccceeeeecCCCCCCCHHHHHHHHHHhcccCcEEEEc
Q 018394 98 DIVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNAEVLFR 177 (356)
Q Consensus 98 d~i~~v~d~~~~~~~~~~i~~~L~~~~i~l~~~~~~lS~g~~qr~~ial~~DEp~~~LD~~~~~~il~~l~~~~~~i~~t 177 (356)
|++++++|...+.. .+.+..++.. +++
T Consensus 91 d~~i~v~d~~~~~s-~~~~~~~~~~----------------------------------------~~~------------ 117 (183)
T 3kkq_A 91 DGFLIVYSVTDKAS-FEHVDRFHQL----------------------------------------ILR------------ 117 (183)
T ss_dssp SEEEEEEETTCHHH-HHTHHHHHHH----------------------------------------HHH------------
T ss_pred CEEEEEEECCCHHH-HHHHHHHHHH----------------------------------------HHH------------
Confidence 77777777665422 1111111110 000
Q ss_pred cCCCHHHHHHHHhccccccceEEEeecCCCCCh-----hhHHHHhc--CCCEEEeccc-cccchHHHHHHHHHHh
Q 018394 178 EDATVDDLIDVIEGNRKYMKCVYVYNKIDVIGI-----DDVDKLAR--QPNSVVISCN-LKLNLDRLLARMWEEM 244 (356)
Q Consensus 178 hd~~~~~~~~~i~~~~~~~p~i~v~NK~Dl~~~-----~~~~~l~~--~~~~i~iSa~-~~~~l~~L~~~i~~~l 244 (356)
.. .....|+++|+||+|+... ++...+.. ..+++++||+ ++.|++++.+.+.+.+
T Consensus 118 ----------~~--~~~~~p~ilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~~v~~l~~~l~~~i 180 (183)
T 3kkq_A 118 ----------VK--DRESFPMILVANKVDLMHLRKVTRDQGKEMATKYNIPYIETSAKDPPLNVDKTFHDLVRVI 180 (183)
T ss_dssp ----------HH--TSSCCCEEEEEECTTCSTTCCSCHHHHHHHHHHHTCCEEEEBCSSSCBSHHHHHHHHHHHH
T ss_pred ----------hc--CCCCCcEEEEEECCCchhccCcCHHHHHHHHHHhCCeEEEeccCCCCCCHHHHHHHHHHHH
Confidence 00 1124699999999998642 22333321 2468999999 9999999999887754
No 186
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=99.45 E-value=9.2e-14 Score=121.98 Aligned_cols=154 Identities=16% Similarity=0.173 Sum_probs=97.2
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHcCCCCccccccccccccceEEEECC--EeecccCccccccccccCccccccccccccc
Q 018394 19 HGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYND--TKIQLLDLPGIIEGASEGKGRGRQVIAVSKS 96 (356)
Q Consensus 19 g~~v~LvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g--~~i~~~D~pGl~~~~~~~~~~~~~~~~~~~~ 96 (356)
...|+|+|.+|||||||+|.|++.... ..++.|+.+.....+.+++ ..+.++||||..... ......++.
T Consensus 24 ~~ki~vvG~~~~GKSsli~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~-------~~~~~~~~~ 95 (201)
T 3oes_A 24 YRKVVILGYRCVGKTSLAHQFVEGEFS-EGYDPTVENTYSKIVTLGKDEFHLHLVDTAGQDEYS-------ILPYSFIIG 95 (201)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSCCC-SCCCCCSEEEEEEEEC----CEEEEEEEECCCCTTC-------CCCGGGTTT
T ss_pred cEEEEEECCCCcCHHHHHHHHHhCCCC-CCCCCccceEEEEEEEECCEEEEEEEEECCCccchH-------HHHHHHHhc
Confidence 468999999999999999999987644 5566666655555555544 566889999953221 112233567
Q ss_pred hhHHHHHHhcCChHHHHHHHHHHHHHccCccccccCcccccceeccceeeeecCCCCCCCHHHHHHHHHHhcccCcEEEE
Q 018394 97 SDIVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNAEVLF 176 (356)
Q Consensus 97 ~d~i~~v~d~~~~~~~~~~i~~~L~~~~i~l~~~~~~lS~g~~qr~~ial~~DEp~~~LD~~~~~~il~~l~~~~~~i~~ 176 (356)
+|++++++|...... .+.+..++.. +..
T Consensus 96 ~d~~i~v~d~~~~~s-~~~~~~~~~~--------------------------------------------i~~------- 123 (201)
T 3oes_A 96 VHGYVLVYSVTSLHS-FQVIESLYQK--------------------------------------------LHE------- 123 (201)
T ss_dssp CCEEEEEEETTCHHH-HHHHHHHHHH--------------------------------------------HHC-------
T ss_pred CCEEEEEEeCCCHHH-HHHHHHHHHH--------------------------------------------HHH-------
Confidence 888888888776432 1112222111 110
Q ss_pred ccCCCHHHHHHHHhccccccceEEEeecCCCCChh-----hHHHHhc--CCCEEEeccccccchHHHHHHHHHHhC
Q 018394 177 REDATVDDLIDVIEGNRKYMKCVYVYNKIDVIGID-----DVDKLAR--QPNSVVISCNLKLNLDRLLARMWEEMG 245 (356)
Q Consensus 177 thd~~~~~~~~~i~~~~~~~p~i~v~NK~Dl~~~~-----~~~~l~~--~~~~i~iSa~~~~~l~~L~~~i~~~l~ 245 (356)
.. .....|+++|+||+|+.... +...+.. ...++++||++|.|++++.+.+.+.+.
T Consensus 124 -----------~~--~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~i~ 186 (201)
T 3oes_A 124 -----------GH--GKTRVPVVLVGNKADLSPEREVQAVEGKKLAESWGATFMESSARENQLTQGIFTKVIQEIA 186 (201)
T ss_dssp ------------------CCCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEECCTTCHHHHHHHHHHHHHHHH
T ss_pred -----------hc--CCCCCCEEEEEECccCccccccCHHHHHHHHHHhCCeEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 00 01136999999999986432 2222221 235889999999999999999987664
No 187
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=99.45 E-value=9.4e-15 Score=128.86 Aligned_cols=61 Identities=26% Similarity=0.294 Sum_probs=40.1
Q ss_pred eEEEecCCcEEEEEcCCCCcHHHHHHHHHcCC--CCccccccccccccceEEEECCEeecccCccccc
Q 018394 12 FEVTKFGHGRVALIGFPSVGKSTLLTLLTGTH--SEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGII 77 (356)
Q Consensus 12 ~~v~~~~g~~v~LvG~~gaGKSTLln~L~g~~--~~vs~~p~TT~~~~~G~i~~~g~~i~~~D~pGl~ 77 (356)
|.+.+ +..|+|+|+||||||||+|+|+|.. ..+++.+|+|+.. +.+.+++ .+.++||||+.
T Consensus 21 ~~~~~--~~~v~lvG~~g~GKSTLl~~l~g~~~~~~~~~~~G~~~~~--~~~~~~~-~~~l~Dt~G~~ 83 (210)
T 1pui_A 21 LPSDT--GIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLI--NLFEVAD-GKRLVDLPGYG 83 (210)
T ss_dssp SSCSC--SEEEEEEECTTSSHHHHHTTTCCC-------------CCE--EEEEEET-TEEEEECCCCC
T ss_pred CCCCC--CcEEEEECCCCCCHHHHHHHHhCCCccccccCCCccceee--EEEEecC-CEEEEECcCCc
Confidence 55555 7899999999999999999999987 4567788988853 5555555 56778999864
No 188
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=99.45 E-value=6.6e-14 Score=148.07 Aligned_cols=78 Identities=12% Similarity=0.089 Sum_probs=60.7
Q ss_pred HHHHHHHHccC---ccccccCcccccceecccee------------eeecCCCCCCCHHHHHHHHH---Hhc-ccCcEEE
Q 018394 115 ILTKELEAVGL---RLNKRPPQIYFKKKKTGGIS------------FNSTLPLTHVDEKLCYQILH---EYK-IHNAEVL 175 (356)
Q Consensus 115 ~i~~~L~~~~i---~l~~~~~~lS~g~~qr~~ia------------l~~DEp~~~LD~~~~~~il~---~l~-~~~~~i~ 175 (356)
...+.|+.+++ .+++++..||+||+||+.|| +++||||++||+.....+++ .+. .+.++|+
T Consensus 824 ~~~~~L~~~gL~~~~l~~~~~~LSGGekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~G~TVIv 903 (972)
T 2r6f_A 824 RKLETLYDVGLGYMKLGQPATTLSGGEAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVDNGDTVLV 903 (972)
T ss_dssp HHHHHHHHTTCSSSBTTCCGGGCCHHHHHHHHHHHHHSSCCCSCEEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEE
T ss_pred HHHHHHHHcCCCcccccCchhhCCHHHHHHHHHHHHHhcCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEE
Confidence 45678899998 46889999999999999887 68999999999988665554 443 3569999
Q ss_pred EccCCCHHHHHHHHhccccccceEEEe
Q 018394 176 FREDATVDDLIDVIEGNRKYMKCVYVY 202 (356)
Q Consensus 176 ~thd~~~~~~~~~i~~~~~~~p~i~v~ 202 (356)
+|||++... ....++++
T Consensus 904 isHdl~~i~----------~aDrIivL 920 (972)
T 2r6f_A 904 IEHNLDVIK----------TADYIIDL 920 (972)
T ss_dssp ECCCHHHHT----------TCSEEEEE
T ss_pred EcCCHHHHH----------hCCEEEEE
Confidence 999965321 24667777
No 189
>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}
Probab=99.45 E-value=5.5e-14 Score=133.80 Aligned_cols=151 Identities=15% Similarity=0.129 Sum_probs=97.1
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcCCCCccccccccccccceEEEECCEeecccCccccccccccCccccccccccccchhH
Q 018394 20 GRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQVIAVSKSSDI 99 (356)
Q Consensus 20 ~~v~LvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~~D~pGl~~~~~~~~~~~~~~~~~~~~~d~ 99 (356)
..|+|+|.+|||||||++.|++... +..+| |++.....+...+..+.++||||-.... ......++.+|+
T Consensus 166 ~kI~ivG~~~vGKSsLl~~l~~~~~-~~~~p--T~~~~~~~~~~~~~~l~i~Dt~G~~~~~-------~~~~~~~~~ad~ 235 (329)
T 3o47_A 166 MRILMVGLDAAGKTTILYKLKLGEI-VTTIP--TIGFNVETVEYKNISFTVWDVGGQDKIR-------PLWRHYFQNTQG 235 (329)
T ss_dssp EEEEEEESTTSSHHHHHHHTCSSCC-EEEEE--ETTEEEEEEEETTEEEEEEECC-----C-------CSHHHHHTTEEE
T ss_pred ceEEEECCCCccHHHHHHHHhCCCC-CCccc--ccceEEEEEecCcEEEEEEECCCCHhHH-------HHHHHHhccCCE
Confidence 5899999999999999999988653 34444 7777788888899999999999942210 111223466788
Q ss_pred HHHHHhcCChHHHHHHHHHHHHHccCccccccCcccccceeccceeeeecCCCCCCCHHHHHHHHHHhcccCcEEEEccC
Q 018394 100 VLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNAEVLFRED 179 (356)
Q Consensus 100 i~~v~d~~~~~~~~~~i~~~L~~~~i~l~~~~~~lS~g~~qr~~ial~~DEp~~~LD~~~~~~il~~l~~~~~~i~~thd 179 (356)
+++|+|+.....-. .+...+. +++..
T Consensus 236 vilV~D~~~~~s~~-~~~~~~~----------------------------------------~~~~~------------- 261 (329)
T 3o47_A 236 LIFVVDSNDRERVN-EAREELM----------------------------------------RMLAE------------- 261 (329)
T ss_dssp EEEEEETTCSSSHH-HHHHHHH----------------------------------------HHHTC-------------
T ss_pred EEEEEECCchHHHH-HHHHHHH----------------------------------------HHHhh-------------
Confidence 88888775432111 1111110 00000
Q ss_pred CCHHHHHHHHhccccccceEEEeecCCCCChhhHHHH---hcC-------CCEEEeccccccchHHHHHHHHHHhC
Q 018394 180 ATVDDLIDVIEGNRKYMKCVYVYNKIDVIGIDDVDKL---ARQ-------PNSVVISCNLKLNLDRLLARMWEEMG 245 (356)
Q Consensus 180 ~~~~~~~~~i~~~~~~~p~i~v~NK~Dl~~~~~~~~l---~~~-------~~~i~iSa~~~~~l~~L~~~i~~~l~ 245 (356)
......|+++|+||+|+......+.+ ... ..++++||++|.|+++|.+.|.+.+.
T Consensus 262 -----------~~~~~~piilV~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~vSAk~g~gi~el~~~l~~~l~ 326 (329)
T 3o47_A 262 -----------DELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLSNQLR 326 (329)
T ss_dssp -----------GGGTTCEEEEEEECTTSTTCCCHHHHHHHHTCTTCCSSCEEEEECBTTTTBTHHHHHHHHHHHHT
T ss_pred -----------hccCCCeEEEEEECccCCcccCHHHHHHHhchhhhhcCCCEEEEEECCCCcCHHHHHHHHHHHHH
Confidence 01124699999999999754322222 111 13789999999999999999988763
No 190
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=99.44 E-value=3.1e-14 Score=123.49 Aligned_cols=153 Identities=15% Similarity=0.072 Sum_probs=90.8
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcCCCCcccccccc------ccccceE------E-EEC--CEeecccCccccccccccCc
Q 018394 20 GRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTT------LTCIPGI------I-HYN--DTKIQLLDLPGIIEGASEGK 84 (356)
Q Consensus 20 ~~v~LvG~~gaGKSTLln~L~g~~~~vs~~p~TT------~~~~~G~------i-~~~--g~~i~~~D~pGl~~~~~~~~ 84 (356)
..|+|+|++|||||||+|.|.+.... .+..++ ..|+.|. + .++ +..+.++||||.....
T Consensus 15 ~ki~vvG~~~~GKssL~~~l~~~~~~--~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~---- 88 (198)
T 3t1o_A 15 FKIVYYGPGLSGKTTNLKWIYSKVPE--GRKGEMVSLATEDERTLFFDFLPLDIGEVKGFKTRFHLYTVPGQVFYN---- 88 (198)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHTSCG--GGBCCCEEEECSSCEEEEEEECCSSCCCSSSCEEEEEEEECCSCCSCS----
T ss_pred cEEEEECCCCCCHHHHHHHHHhhccc--cccccccccccccccceeeeecccccccccCCceEEEEEeCCChHHHH----
Confidence 58999999999999999999987543 221111 1122221 1 122 2457889999853211
Q ss_pred cccccccccccchhHHHHHHhcCChHHHH--HHHHHHHHHccCccccccCcccccceeccceeeeecCCCCCCCHHHHHH
Q 018394 85 GRGRQVIAVSKSSDIVLMVLDASKSEGHR--QILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQ 162 (356)
Q Consensus 85 ~~~~~~~~~~~~~d~i~~v~d~~~~~~~~--~~i~~~L~~~~i~l~~~~~~lS~g~~qr~~ial~~DEp~~~LD~~~~~~ 162 (356)
......++.+|++++|+|...+.... +.+. .+..
T Consensus 89 ---~~~~~~~~~~d~~i~v~D~~~~~~~~~~~s~~-----------------------------------------~l~~ 124 (198)
T 3t1o_A 89 ---ASRKLILRGVDGIVFVADSAPNRLRANAESMR-----------------------------------------NMRE 124 (198)
T ss_dssp ---HHHHHHTTTCCEEEEEEECCGGGHHHHHHHHH-----------------------------------------HHHH
T ss_pred ---HHHHHHHhcCCEEEEEEECCcchhhHhHHHHH-----------------------------------------HHHH
Confidence 11122356788888888877432111 1111 1112
Q ss_pred HHHHhcccCcEEEEccCCCHHHHHHHHhccccccceEEEeecCCCCCh---hhHHHHhcC--C-CEEEeccccccchHHH
Q 018394 163 ILHEYKIHNAEVLFREDATVDDLIDVIEGNRKYMKCVYVYNKIDVIGI---DDVDKLARQ--P-NSVVISCNLKLNLDRL 236 (356)
Q Consensus 163 il~~l~~~~~~i~~thd~~~~~~~~~i~~~~~~~p~i~v~NK~Dl~~~---~~~~~l~~~--~-~~i~iSa~~~~~l~~L 236 (356)
++..+. ......|+++|+||+|+... ++...+... . .++++||++|.|++++
T Consensus 125 ~l~~~~----------------------~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l 182 (198)
T 3t1o_A 125 NLAEYG----------------------LTLDDVPIVIQVNKRDLPDALPVEMVRAVVDPEGKFPVLEAVATEGKGVFET 182 (198)
T ss_dssp HHHHTT----------------------CCTTSSCEEEEEECTTSTTCCCHHHHHHHHCTTCCSCEEECBGGGTBTHHHH
T ss_pred HHHhhc----------------------cccCCCCEEEEEEchhcccccCHHHHHHHHHhcCCceEEEEecCCCcCHHHH
Confidence 222211 01124699999999999743 334444322 2 6899999999999999
Q ss_pred HHHHHHHh
Q 018394 237 LARMWEEM 244 (356)
Q Consensus 237 ~~~i~~~l 244 (356)
.+.+.+.+
T Consensus 183 ~~~l~~~i 190 (198)
T 3t1o_A 183 LKEVSRLV 190 (198)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 98887654
No 191
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=99.44 E-value=1.8e-13 Score=118.97 Aligned_cols=154 Identities=12% Similarity=0.076 Sum_probs=96.2
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHcCCCCccccccccccccceEEEECCE--eecccCccccccccccCccccccccccccc
Q 018394 19 HGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDT--KIQLLDLPGIIEGASEGKGRGRQVIAVSKS 96 (356)
Q Consensus 19 g~~v~LvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~--~i~~~D~pGl~~~~~~~~~~~~~~~~~~~~ 96 (356)
...|+|+|.+|||||||+|.+++.. ...+++.|+.+.....+.+++. .+.++||||..... . ....++.
T Consensus 21 ~~ki~vvG~~~vGKTsLi~~l~~~~-~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~----~----~~~~~~~ 91 (187)
T 3c5c_A 21 EVNLAILGRRGAGKSALTVKFLTKR-FISEYDPNLEDTYSSEETVDHQPVHLRVMDTADLDTPR----N----CERYLNW 91 (187)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHSS-CCSCCCTTCCEEEEEEEEETTEEEEEEEEECCC---CC----C----THHHHTT
T ss_pred eEEEEEECCCCCcHHHHHHHHHhCC-CCcccCCCccceeeEEEEECCEEEEEEEEECCCCCcch----h----HHHHHhh
Confidence 3689999999999999999999865 3466777777665556677775 56779999963211 1 1123456
Q ss_pred hhHHHHHHhcCChHHHHHHHHHHHHHccCccccccCcccccceeccceeeeecCCCCCCCHHHHHHHHHHhcccCcEEEE
Q 018394 97 SDIVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNAEVLF 176 (356)
Q Consensus 97 ~d~i~~v~d~~~~~~~~~~i~~~L~~~~i~l~~~~~~lS~g~~qr~~ial~~DEp~~~LD~~~~~~il~~l~~~~~~i~~ 176 (356)
+|++++|+|...... .+.+..++.. +.
T Consensus 92 ~~~~ilv~d~~~~~s-~~~~~~~~~~--------------------------------------------i~-------- 118 (187)
T 3c5c_A 92 AHAFLVVYSVDSRQS-FDSSSSYLEL--------------------------------------------LA-------- 118 (187)
T ss_dssp CSEEEEEEETTCHHH-HHHHHHHHHH--------------------------------------------HH--------
T ss_pred CCEEEEEEECCCHHH-HHHHHHHHHH--------------------------------------------HH--------
Confidence 777777777665322 1112222111 10
Q ss_pred ccCCCHHHHHHHHhccccccceEEEeecCCCCCh-----hhHHHHhc--CCCEEEecc-ccccchHHHHHHHHHHh
Q 018394 177 REDATVDDLIDVIEGNRKYMKCVYVYNKIDVIGI-----DDVDKLAR--QPNSVVISC-NLKLNLDRLLARMWEEM 244 (356)
Q Consensus 177 thd~~~~~~~~~i~~~~~~~p~i~v~NK~Dl~~~-----~~~~~l~~--~~~~i~iSa-~~~~~l~~L~~~i~~~l 244 (356)
..........|+++|+||+|+... ++...+.. ...++.+|| +++.|++++.+.+.+.+
T Consensus 119 ----------~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~g~gv~~lf~~l~~~i 184 (187)
T 3c5c_A 119 ----------LHAKETQRSIPALLLGNKLDMAQYRQVTKAEGVALAGRFGCLFFEVSACLDFEHVQHVFHEAVREA 184 (187)
T ss_dssp ----------HHHHHHCCCCCEEEEEECGGGGGGCSSCHHHHHHHHHHHTCEEEECCSSSCSHHHHHHHHHHHHHH
T ss_pred ----------HHhhccCCCCCEEEEEECcchhhcCccCHHHHHHHHHHcCCcEEEEeecCccccHHHHHHHHHHHH
Confidence 000000124699999999998532 22333322 235789999 89999999999887654
No 192
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=99.44 E-value=6.8e-14 Score=131.57 Aligned_cols=167 Identities=13% Similarity=0.115 Sum_probs=80.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC-CCCcccccc------cccccc-ceEE-EECC--EeecccCccccccccccCcccccc
Q 018394 21 RVALIGFPSVGKSTLLTLLTGT-HSEAASYEF------TTLTCI-PGII-HYND--TKIQLLDLPGIIEGASEGKGRGRQ 89 (356)
Q Consensus 21 ~v~LvG~~gaGKSTLln~L~g~-~~~vs~~p~------TT~~~~-~G~i-~~~g--~~i~~~D~pGl~~~~~~~~~~~~~ 89 (356)
.|+|+|+||||||||+|+|.|. ..+.+..++ .|.... .+.+ ..++ ..++++|++|+..... ..
T Consensus 20 ~I~lvG~nG~GKSTLl~~L~g~~~~~~~gi~~~g~~~~~t~~~~~~~~~~q~~~~~~~ltv~Dt~g~~~~~~------~~ 93 (301)
T 2qnr_A 20 TLMVVGESGLGKSTLINSLFLTDLYPERVISGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYGDAIN------CR 93 (301)
T ss_dssp EEEEEEETTSSHHHHHHHHHC------------------------CEEEEC---CCEEEEEEEEC---------------
T ss_pred EEEEECCCCCCHHHHHHHHhCCCccCCCCcccCCcccCCcceEeeEEEEecCCCcccCcchhhhhhhhhhcC------cH
Confidence 4499999999999999999997 444332221 111111 1111 1122 2456677776521100 00
Q ss_pred ccccccchhHHHHHHhcCChHHHHHHHHHHHHHccCccccccCcccccceecccee-----eeecCCCCC-CCHHHHHHH
Q 018394 90 VIAVSKSSDIVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGIS-----FNSTLPLTH-VDEKLCYQI 163 (356)
Q Consensus 90 ~~~~~~~~d~i~~v~d~~~~~~~~~~i~~~L~~~~i~l~~~~~~lS~g~~qr~~ia-----l~~DEp~~~-LD~~~~~~i 163 (356)
..++ .++-. +.+. .+.++..+|+|++|++.++ +++|||+++ ||+... ++
T Consensus 94 --e~~~--~l~~~-------------l~~~-------~~~~~~~~sgg~rqrv~~ara~~ll~ldePt~~~Ld~~~~-~~ 148 (301)
T 2qnr_A 94 --DCFK--TIISY-------------IDEQ-------FERYLHDESGLNRRHIIDNRVHCCFYFISPFGHGLKPLDV-AF 148 (301)
T ss_dssp ----CT--THHHH-------------HHHH-------HHHHHHHHTSSCCTTCCCCCCCEEEEEECSSSSSCCHHHH-HH
T ss_pred --HHHH--HHHHH-------------HHHH-------HHHHHHHhCHHhhhhhhhhhhhheeeeecCcccCCCHHHH-HH
Confidence 0000 00000 1111 1234467899999998875 888999984 999763 44
Q ss_pred HHHhcccCcEEEEccCCCHHHHHHHHhccccccceEEEeecCCCCChhhHH----H---H-hc-CCCEEEeccccccchH
Q 018394 164 LHEYKIHNAEVLFREDATVDDLIDVIEGNRKYMKCVYVYNKIDVIGIDDVD----K---L-AR-QPNSVVISCNLKLNLD 234 (356)
Q Consensus 164 l~~l~~~~~~i~~thd~~~~~~~~~i~~~~~~~p~i~v~NK~Dl~~~~~~~----~---l-~~-~~~~i~iSa~~~~~l~ 234 (356)
++.+. ...|+++|+||.|+....++. . . .. ...++++||+++ +++
T Consensus 149 l~~l~-------------------------~~~~iilV~~K~Dl~~~~e~~~~~~~~~~~~~~~~~~~~e~Sa~~~-~v~ 202 (301)
T 2qnr_A 149 MKAIH-------------------------NKVNIVPVIAKADTLTLKERERLKKRILDEIEEHNIKIYHLPDAES-DED 202 (301)
T ss_dssp HHHHT-------------------------TTSCEEEEECCGGGSCHHHHHHHHHHHHHHHHHTTCCCCCCC--------
T ss_pred HHHHH-------------------------hcCCEEEEEEeCCCCCHHHHHHHHHHHHHHHHHcCCeEEecCCccc-ccc
Confidence 43321 124899999999998654432 1 1 11 235788999999 998
Q ss_pred HHHHHHHHHh
Q 018394 235 RLLARMWEEM 244 (356)
Q Consensus 235 ~L~~~i~~~l 244 (356)
++.+.+.+.+
T Consensus 203 e~f~~l~~~i 212 (301)
T 2qnr_A 203 EDFKEQTRLL 212 (301)
T ss_dssp --CHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 8766665543
No 193
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=99.44 E-value=4.5e-16 Score=154.50 Aligned_cols=144 Identities=14% Similarity=0.089 Sum_probs=88.2
Q ss_pred CCCeEEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCccccccccccccce-E-EEECCEeecccCccccccccccCccc
Q 018394 9 GEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPG-I-IHYNDTKIQLLDLPGIIEGASEGKGR 86 (356)
Q Consensus 9 ~~s~~v~~~~g~~v~LvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G-~-i~~~g~~i~~~D~pGl~~~~~~~~~~ 86 (356)
+++|++.+ |++++|+||||||||||+++|+|...+ ..| . +.++|.. ..+++.
T Consensus 130 ~vsl~i~~--Ge~v~IvGpnGsGKSTLlr~L~Gl~~p-----------~~G~~pI~vdg~~-------------~~~i~~ 183 (460)
T 2npi_A 130 KIRMSNFE--GPRVVIVGGSQTGKTSLSRTLCSYALK-----------FNAYQPLYINLDP-------------QQPIFT 183 (460)
T ss_dssp HHHHHSSS--CCCEEEEESTTSSHHHHHHHHHHTTHH-----------HHCCCCEEEECCT-------------TSCSSS
T ss_pred cCceEeCC--CCEEEEECCCCCCHHHHHHHHhCcccc-----------cCCceeEEEcCCc-------------cCCeee
Confidence 35677777 789999999999999999999999765 678 7 8887621 011222
Q ss_pred ccccccc------ccchhHHHHHHhcCChHHHHHHHHHHHHHccC-ccccccCcccccceecccee--------------
Q 018394 87 GRQVIAV------SKSSDIVLMVLDASKSEGHRQILTKELEAVGL-RLNKRPPQIYFKKKKTGGIS-------------- 145 (356)
Q Consensus 87 ~~~~~~~------~~~~d~i~~v~d~~~~~~~~~~i~~~L~~~~i-~l~~~~~~lS~g~~qr~~ia-------------- 145 (356)
..|.... +...+.+ +...........+.+.++++.+|+ .... +.+||+||+||+++|
T Consensus 184 vpq~~~l~~~~~~~tv~eni-~~~~~~~~~~~~~~~~~ll~~~gl~~~~~-~~~LSgGq~qrlalAra~rL~~~p~i~~s 261 (460)
T 2npi_A 184 VPGCISATPISDILDAQLPT-WGQSLTSGATLLHNKQPMVKNFGLERINE-NKDLYLECISQLGQVVGQRLHLDPQVRRS 261 (460)
T ss_dssp CSSCCEEEECCSCCCTTCTT-CSCBCBSSCCSSCCBCCEECCCCSSSGGG-CHHHHHHHHHHHHHHHHHHHHHCHHHHHS
T ss_pred eccchhhcccccccchhhhh-cccccccCcchHHHHHHHHHHhCCCcccc-hhhhhHHHHHHHHHHHHHHhccCcccCcc
Confidence 2222211 1111111 111000000011123344556676 2222 789999999999765
Q ss_pred -eeecC-CCCCCCHHHHHHHHHHhc-ccCcEEEEccCCC
Q 018394 146 -FNSTL-PLTHVDEKLCYQILHEYK-IHNAEVLFREDAT 181 (356)
Q Consensus 146 -l~~DE-p~~~LD~~~~~~il~~l~-~~~~~i~~thd~~ 181 (356)
+++|| ||++||+. ...+.+.+. .+.++++++|+..
T Consensus 262 GLlLDEpPts~LD~~-~~~l~~l~~~~~~tviiVth~~~ 299 (460)
T 2npi_A 262 GCIVDTPSISQLDEN-LAELHHIIEKLNVNIMLVLCSET 299 (460)
T ss_dssp CEEEECCCGGGSCSS-CHHHHHHHHHTTCCEEEEECCSS
T ss_pred eEEEeCCcccccChh-HHHHHHHHHHhCCCEEEEEccCc
Confidence 78999 99999987 322222222 2458999999987
No 194
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}
Probab=99.16 E-value=8.8e-15 Score=128.71 Aligned_cols=83 Identities=18% Similarity=0.190 Sum_probs=60.7
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHcCCCCccccccccccccceEEEECCEee--cccCccccccccccCccccccccccccc
Q 018394 19 HGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKI--QLLDLPGIIEGASEGKGRGRQVIAVSKS 96 (356)
Q Consensus 19 g~~v~LvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i--~~~D~pGl~~~~~~~~~~~~~~~~~~~~ 96 (356)
...|+++|.+|||||||++.+++... ...++.||.+.....+.+++..+ .++||||..... ......++.
T Consensus 30 ~~ki~v~G~~~~GKSsli~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~-------~~~~~~~~~ 101 (204)
T 3th5_A 30 AIKCVVVGDGAVGKTCLLISYTTNAF-PGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYD-------RLRPLSYPQ 101 (204)
Confidence 47899999999999999999986543 45667777777777777777654 488999964321 111223577
Q ss_pred hhHHHHHHhcCCh
Q 018394 97 SDIVLMVLDASKS 109 (356)
Q Consensus 97 ~d~i~~v~d~~~~ 109 (356)
+|++++|+|...+
T Consensus 102 ~d~iilv~D~~~~ 114 (204)
T 3th5_A 102 TDVFLICFSLVSP 114 (204)
Confidence 9999999987654
No 195
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=99.44 E-value=1.7e-13 Score=118.94 Aligned_cols=146 Identities=16% Similarity=0.085 Sum_probs=91.3
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcCCCCccccccccccccceEEEECCEe--ecccCccccccccccCccccccccccccch
Q 018394 20 GRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTK--IQLLDLPGIIEGASEGKGRGRQVIAVSKSS 97 (356)
Q Consensus 20 ~~v~LvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~--i~~~D~pGl~~~~~~~~~~~~~~~~~~~~~ 97 (356)
..|+|+|.+|||||||+|.+++..... .+. +|.+.....+.++|.. +.++||+|.... + .++.+
T Consensus 21 ~ki~ivG~~~vGKSsL~~~~~~~~~~~-~~~-~t~~~~~~~~~~~~~~~~l~i~Dt~G~~~~---------~---~~~~~ 86 (184)
T 3ihw_A 21 LKVGIVGNLSSGKSALVHRYLTGTYVQ-EES-PEGGRFKKEIVVDGQSYLLLIRDEGGPPEL---------Q---FAAWV 86 (184)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHSSCCC-CCC-TTCEEEEEEEEETTEEEEEEEEECSSSCCH---------H---HHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCC-CcC-CCcceEEEEEEECCEEEEEEEEECCCChhh---------h---eecCC
Confidence 689999999999999999888765331 222 2334344577888854 566899985321 1 34556
Q ss_pred hHHHHHHhcCChHHHHHHHHHHHHHccCccccccCcccccceeccceeeeecCCCCCCCHHHHHHHHHHhcccCcEEEEc
Q 018394 98 DIVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNAEVLFR 177 (356)
Q Consensus 98 d~i~~v~d~~~~~~~~~~i~~~L~~~~i~l~~~~~~lS~g~~qr~~ial~~DEp~~~LD~~~~~~il~~l~~~~~~i~~t 177 (356)
|++++|+|...... .+.+..++ ..+...
T Consensus 87 ~~~i~v~d~~~~~s-~~~~~~~~--------------------------------------------~~i~~~------- 114 (184)
T 3ihw_A 87 DAVVFVFSLEDEIS-FQTVYNYF--------------------------------------------LRLCSF------- 114 (184)
T ss_dssp SEEEEEEETTCHHH-HHHHHHHH--------------------------------------------HHHHTT-------
T ss_pred CEEEEEEECcCHHH-HHHHHHHH--------------------------------------------HHHHHh-------
Confidence 77777777765432 11112222 111100
Q ss_pred cCCCHHHHHHHHhccccccceEEEeecCCCC-------ChhhHHHHhc-C--CCEEEeccccccchHHHHHHHHHHh
Q 018394 178 EDATVDDLIDVIEGNRKYMKCVYVYNKIDVI-------GIDDVDKLAR-Q--PNSVVISCNLKLNLDRLLARMWEEM 244 (356)
Q Consensus 178 hd~~~~~~~~~i~~~~~~~p~i~v~NK~Dl~-------~~~~~~~l~~-~--~~~i~iSa~~~~~l~~L~~~i~~~l 244 (356)
......|+++|.||+|+. ..++...+.. . ..++.+||++|.|++++.+.+.+.+
T Consensus 115 -------------~~~~~~piilv~nK~Dl~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~gv~~lf~~l~~~i 178 (184)
T 3ihw_A 115 -------------RNASEVPMVLVGTQDAISAANPRVIDDSRARKLSTDLKRCTYYETCATYGLNVERVFQDVAQKV 178 (184)
T ss_dssp -------------SCGGGSCEEEEEECTTCBTTBCCCSCHHHHHHHHHHTTTCEEEEEBTTTTBTHHHHHHHHHHHH
T ss_pred -------------cCCCCCCEEEEEECcccccccccccCHHHHHHHHHHcCCCeEEEecCCCCCCHHHHHHHHHHHH
Confidence 001246999999999983 2233333332 2 4578999999999999999887654
No 196
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.43 E-value=6.8e-14 Score=121.69 Aligned_cols=153 Identities=16% Similarity=0.140 Sum_probs=93.6
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHcCCCCccccccccccccceEEEEC--CEeecccCccccccccccCccccccccccccc
Q 018394 19 HGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYN--DTKIQLLDLPGIIEGASEGKGRGRQVIAVSKS 96 (356)
Q Consensus 19 g~~v~LvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~--g~~i~~~D~pGl~~~~~~~~~~~~~~~~~~~~ 96 (356)
-..|+|+|++|||||||+|.|++........|..+.+.....+.++ +..+.++|+||..... ......++.
T Consensus 23 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~-------~~~~~~~~~ 95 (191)
T 3dz8_A 23 MFKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYRHEKRVKLQIWDTAGQERYR-------TITTAYYRG 95 (191)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHTTCCCEEEEETTTEEEEEEEETTTTEEEEEECHHHHHHCH-------HHHHHHHTT
T ss_pred eeEEEEECCCCcCHHHHHHHHhcCCCCcccCCCeeeEEEEEEEEECCEEEEEEEEeCCChHHHH-------HHHHHHHcc
Confidence 3589999999999999999999876432323333333344455554 4578899999953211 111223466
Q ss_pred hhHHHHHHhcCChHHHHHHHHHHHHHccCccccccCcccccceeccceeeeecCCCCCCCHHHHHHHHHHhcccCcEEEE
Q 018394 97 SDIVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNAEVLF 176 (356)
Q Consensus 97 ~d~i~~v~d~~~~~~~~~~i~~~L~~~~i~l~~~~~~lS~g~~qr~~ial~~DEp~~~LD~~~~~~il~~l~~~~~~i~~ 176 (356)
+|++++|+|...... .+.+.. ++..+..
T Consensus 96 ~d~~i~v~d~~~~~s-~~~~~~--------------------------------------------~~~~i~~------- 123 (191)
T 3dz8_A 96 AMGFILMYDITNEES-FNAVQD--------------------------------------------WATQIKT------- 123 (191)
T ss_dssp CCEEEEEEETTCHHH-HHTHHH--------------------------------------------HHHHHHH-------
T ss_pred CCEEEEEEECcCHHH-HHHHHH--------------------------------------------HHHHHHH-------
Confidence 777777777765322 111111 1111110
Q ss_pred ccCCCHHHHHHHHhccccccceEEEeecCCCCCh-----hhHHHHhc--CCCEEEeccccccchHHHHHHHHHHh
Q 018394 177 REDATVDDLIDVIEGNRKYMKCVYVYNKIDVIGI-----DDVDKLAR--QPNSVVISCNLKLNLDRLLARMWEEM 244 (356)
Q Consensus 177 thd~~~~~~~~~i~~~~~~~p~i~v~NK~Dl~~~-----~~~~~l~~--~~~~i~iSa~~~~~l~~L~~~i~~~l 244 (356)
. .....|+++|+||+|+... ++...+.. ...++++||++|.|++++.+.+.+.+
T Consensus 124 ------------~--~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i 184 (191)
T 3dz8_A 124 ------------Y--SWDNAQVILVGNKCDMEEERVVPTEKGQLLAEQLGFDFFEASAKENISVRQAFERLVDAI 184 (191)
T ss_dssp ------------H--SCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEECBTTTTBSHHHHHHHHHHHH
T ss_pred ------------h--cCCCCCEEEEEECCCCccccccCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 0 1124699999999998532 22222221 23588999999999999999887754
No 197
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=99.43 E-value=1.9e-15 Score=140.95 Aligned_cols=49 Identities=18% Similarity=0.045 Sum_probs=35.5
Q ss_pred ccceEEEeecCCCCChhh--HHHHhc--------CCCEEEeccccccchHHHHHHHHHH
Q 018394 195 YMKCVYVYNKIDVIGIDD--VDKLAR--------QPNSVVISCNLKLNLDRLLARMWEE 243 (356)
Q Consensus 195 ~~p~i~v~NK~Dl~~~~~--~~~l~~--------~~~~i~iSa~~~~~l~~L~~~i~~~ 243 (356)
.+|+++|+||+|+..... .+.+.. +.+++++||+++.|+++|.+.+.+.
T Consensus 192 ~~~~i~V~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~v~~~SA~~~~gi~~l~~~l~~~ 250 (299)
T 2aka_B 192 GQRTIGVITKLDLMDEGTDARDVLENKLLPLRRGYIGVVNRSQKDIDGKKDITAALAAE 250 (299)
T ss_dssp CSSEEEEEECGGGSCTTCCCHHHHTTCSSCCTTCEEECCCCCCBCTTSCBCHHHHHHHH
T ss_pred CCeEEEEEEccccCCCCchHHHHHhCCcCcCCCCcEEEECCChhhccccccHHHHHHHH
Confidence 469999999999975432 222221 1236779999999999999988763
No 198
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=99.43 E-value=1.3e-13 Score=119.65 Aligned_cols=154 Identities=18% Similarity=0.152 Sum_probs=96.3
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcCCCCccccccccccccceEEEECC--EeecccCccccccccccCccccccccccccch
Q 018394 20 GRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYND--TKIQLLDLPGIIEGASEGKGRGRQVIAVSKSS 97 (356)
Q Consensus 20 ~~v~LvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g--~~i~~~D~pGl~~~~~~~~~~~~~~~~~~~~~ 97 (356)
..|+|+|.+|||||||+|.|++........|.++.+.....+.+++ ..+.++||||...... . .....++.+
T Consensus 21 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~---~---~~~~~~~~~ 94 (189)
T 1z06_A 21 FKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQERFRK---S---MVQHYYRNV 94 (189)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSSCCSSCCCCCSCCEEEEEEEETTEEEEEEEEECCCSHHHHT---T---THHHHHTTC
T ss_pred EEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCcceEEEEEEEEECCEEEEEEEEECCCchhhhh---h---hhHHHhcCC
Confidence 5899999999999999999998765444456666666677788887 4678899999532110 0 111234667
Q ss_pred hHHHHHHhcCChHHHHHHHHHHHHHccCccccccCcccccceeccceeeeecCCCCCCCHHHHHHHHHHhcccCcEEEEc
Q 018394 98 DIVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNAEVLFR 177 (356)
Q Consensus 98 d~i~~v~d~~~~~~~~~~i~~~L~~~~i~l~~~~~~lS~g~~qr~~ial~~DEp~~~LD~~~~~~il~~l~~~~~~i~~t 177 (356)
|++++|+|....... +.+..++ ..+.
T Consensus 95 d~iilv~D~~~~~s~-~~~~~~~--------------------------------------------~~i~--------- 120 (189)
T 1z06_A 95 HAVVFVYDMTNMASF-HSLPAWI--------------------------------------------EECK--------- 120 (189)
T ss_dssp CEEEEEEETTCHHHH-HTHHHHH--------------------------------------------HHHH---------
T ss_pred CEEEEEEECcCHHHH-HHHHHHH--------------------------------------------HHHH---------
Confidence 888888877654221 1111111 1110
Q ss_pred cCCCHHHHHHHHhccccccceEEEeecCCCCCh-----hhHHHHhc--CCCEEEeccccc---cchHHHHHHHHHHh
Q 018394 178 EDATVDDLIDVIEGNRKYMKCVYVYNKIDVIGI-----DDVDKLAR--QPNSVVISCNLK---LNLDRLLARMWEEM 244 (356)
Q Consensus 178 hd~~~~~~~~~i~~~~~~~p~i~v~NK~Dl~~~-----~~~~~l~~--~~~~i~iSa~~~---~~l~~L~~~i~~~l 244 (356)
... .....|+++|+||+|+... ++...+.. ...++++||+++ .|++++.+.+.+.+
T Consensus 121 ---------~~~--~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~~~~i~~l~~~l~~~i 186 (189)
T 1z06_A 121 ---------QHL--LANDIPRILVGNKCDLRSAIQVPTDLAQKFADTHSMPLFETSAKNPNDNDHVEAIFMTLAHKL 186 (189)
T ss_dssp ---------HHC--CCSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTCCEEECCSSSGGGGSCHHHHHHHHC---
T ss_pred ---------Hhc--CCCCCCEEEEEECccccccceeCHHHHHHHHHHcCCEEEEEeCCcCCcccCHHHHHHHHHHHH
Confidence 000 0123699999999998643 22333332 235899999999 88888888775543
No 199
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=99.43 E-value=1e-13 Score=121.51 Aligned_cols=153 Identities=17% Similarity=0.099 Sum_probs=88.8
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHcCCCCccccccccccccceEEEECCE--eecccCccccccccccCccccccccccccc
Q 018394 19 HGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDT--KIQLLDLPGIIEGASEGKGRGRQVIAVSKS 96 (356)
Q Consensus 19 g~~v~LvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~--~i~~~D~pGl~~~~~~~~~~~~~~~~~~~~ 96 (356)
...|+|+|++|||||||+|.|++........|.++.+.....+.+++. .+.++||||..... ......++.
T Consensus 28 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~-------~~~~~~~~~ 100 (199)
T 2p5s_A 28 AYKIVLAGDAAVGKSSFLMRLCKNEFRENISATLGVDFQMKTLIVDGERTVLQLWDTAGQERFR-------SIAKSYFRK 100 (199)
T ss_dssp CEEEEEESSTTSSHHHHHHHHHHCCCC----------CEEEEEEETTEEEEEEEEECTTCTTCH-------HHHHHHHHH
T ss_pred CeEEEEECcCCCCHHHHHHHHHhCCCCccCCCCccceeEEEEEEECCEEEEEEEEECCCCcchh-------hhHHHHHhh
Confidence 579999999999999999999987633222233333334456667774 57889999953211 111122455
Q ss_pred hhHHHHHHhcCChHHHHHHHHHHHHHccCccccccCcccccceeccceeeeecCCCCCCCHHHHHHHHHHhcccCcEEEE
Q 018394 97 SDIVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNAEVLF 176 (356)
Q Consensus 97 ~d~i~~v~d~~~~~~~~~~i~~~L~~~~i~l~~~~~~lS~g~~qr~~ial~~DEp~~~LD~~~~~~il~~l~~~~~~i~~ 176 (356)
+|++++|+|....... +.+.. ++..+.
T Consensus 101 ~d~iilv~d~~~~~s~-~~~~~--------------------------------------------~~~~i~-------- 127 (199)
T 2p5s_A 101 ADGVLLLYDVTCEKSF-LNIRE--------------------------------------------WVDMIE-------- 127 (199)
T ss_dssp CSEEEEEEETTCHHHH-HTHHH--------------------------------------------HHHHHH--------
T ss_pred CCEEEEEEECCChHHH-HHHHH--------------------------------------------HHHHHH--------
Confidence 6777777776553221 11111 111110
Q ss_pred ccCCCHHHHHHHHhccccccceEEEeecCCCCCh-----------hhHHHHhc--CCCEEEeccccccchHHHHHHHHHH
Q 018394 177 REDATVDDLIDVIEGNRKYMKCVYVYNKIDVIGI-----------DDVDKLAR--QPNSVVISCNLKLNLDRLLARMWEE 243 (356)
Q Consensus 177 thd~~~~~~~~~i~~~~~~~p~i~v~NK~Dl~~~-----------~~~~~l~~--~~~~i~iSa~~~~~l~~L~~~i~~~ 243 (356)
.. .....|+++|+||+|+... ++...+.. ...++++||++|.|++++.+.+.+.
T Consensus 128 -----------~~--~~~~~piilv~NK~Dl~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~SA~~g~gv~el~~~l~~~ 194 (199)
T 2p5s_A 128 -----------DA--AHETVPIMLVGNKADIRDTAATEGQKCVPGHFGEKLAMTYGALFCETSAKDGSNIVEAVLHLARE 194 (199)
T ss_dssp -----------HH--C---CCEEEEEECGGGHHHHHHTTCCCCCHHHHHHHHHHHTCEEEECCTTTCTTHHHHHHHHHHH
T ss_pred -----------Hh--cCCCCCEEEEEECcccccccccccccccCHHHHHHHHHHcCCeEEEeeCCCCCCHHHHHHHHHHH
Confidence 00 0113599999999998521 11222221 2357899999999999999988876
Q ss_pred h
Q 018394 244 M 244 (356)
Q Consensus 244 l 244 (356)
+
T Consensus 195 i 195 (199)
T 2p5s_A 195 V 195 (199)
T ss_dssp H
T ss_pred H
Confidence 5
No 200
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=99.43 E-value=1.8e-13 Score=120.07 Aligned_cols=58 Identities=28% Similarity=0.269 Sum_probs=46.5
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcCCCCccccccccccccceEEEECCEe--ecccCccccc
Q 018394 20 GRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTK--IQLLDLPGII 77 (356)
Q Consensus 20 ~~v~LvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~--i~~~D~pGl~ 77 (356)
..++|+|+||||||||+|+|+|........|.++.++..|.+.++|.+ +.++|++|..
T Consensus 6 ~kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~ 65 (199)
T 2f9l_A 6 FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQE 65 (199)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHSCCCC---CCCSCEEEEEEEEETTEEEEEEEEECSSGG
T ss_pred EEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCch
Confidence 479999999999999999999987655555777778889999999975 4568999853
No 201
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=99.42 E-value=2e-13 Score=121.47 Aligned_cols=152 Identities=16% Similarity=0.112 Sum_probs=95.9
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHcCCCCccccccccccccceEEEECC--EeecccCccccccccccCccccccccccccc
Q 018394 19 HGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYND--TKIQLLDLPGIIEGASEGKGRGRQVIAVSKS 96 (356)
Q Consensus 19 g~~v~LvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g--~~i~~~D~pGl~~~~~~~~~~~~~~~~~~~~ 96 (356)
...|+|+|.+|||||||++.+++... ...++.|+.+.....+.+++ ..+.++||+|..... . .....++.
T Consensus 27 ~~ki~vvG~~~vGKSsL~~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~----~---~~~~~~~~ 98 (214)
T 3q3j_B 27 RCKLVLVGDVQCGKTAMLQVLAKDCY-PETYVPTVFENYTACLETEEQRVELSLWDTSGSPYYD----N---VRPLCYSD 98 (214)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHSCC-CSSCCCCSEEEEEEEEEC--CEEEEEEEEECCSGGGT----T---TGGGGCTT
T ss_pred eEEEEEECcCCCCHHHHHHHHhcCCC-CCCcCCeeeeeEEEEEEECCEEEEEEEEECCCCHhHH----H---HHHHHcCC
Confidence 46899999999999999999998653 34555555554444555555 457789999953221 1 11223567
Q ss_pred hhHHHHHHhcCChHHHHHHHHHHHHHccCccccccCcccccceeccceeeeecCCCCCCCHHHHHHHHHHhcccCcEEEE
Q 018394 97 SDIVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNAEVLF 176 (356)
Q Consensus 97 ~d~i~~v~d~~~~~~~~~~i~~~L~~~~i~l~~~~~~lS~g~~qr~~ial~~DEp~~~LD~~~~~~il~~l~~~~~~i~~ 176 (356)
+|++++|+|..........+..++ ..+.
T Consensus 99 ~d~~i~v~d~~~~~s~~~~~~~~~--------------------------------------------~~i~-------- 126 (214)
T 3q3j_B 99 SDAVLLCFDISRPETVDSALKKWR--------------------------------------------TEIL-------- 126 (214)
T ss_dssp CSEEEEEEETTCTHHHHHHHTHHH--------------------------------------------HHHH--------
T ss_pred CeEEEEEEECcCHHHHHHHHHHHH--------------------------------------------HHHH--------
Confidence 888888888876533221111111 1111
Q ss_pred ccCCCHHHHHHHHhccccccceEEEeecCCCCCh-----------------hhHHHHh---cCCCEEEeccccccc-hHH
Q 018394 177 REDATVDDLIDVIEGNRKYMKCVYVYNKIDVIGI-----------------DDVDKLA---RQPNSVVISCNLKLN-LDR 235 (356)
Q Consensus 177 thd~~~~~~~~~i~~~~~~~p~i~v~NK~Dl~~~-----------------~~~~~l~---~~~~~i~iSa~~~~~-l~~ 235 (356)
......|+++|.||+|+... ++...+. ....++.+||+++.| +++
T Consensus 127 --------------~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~SA~~g~g~v~~ 192 (214)
T 3q3j_B 127 --------------DYCPSTRVLLIGCKTDLRTDLSTLMELSHQKQAPISYEQGCAIAKQLGAEIYLEGSAFTSEKSIHS 192 (214)
T ss_dssp --------------HHCTTSEEEEEEECGGGGGCHHHHHHHHHTTCCCCCHHHHHHHHHHHTCSEEEECCTTTCHHHHHH
T ss_pred --------------HhCCCCCEEEEEEChhhccchhhhhhhcccccCccCHHHHHHHHHHcCCCEEEEeccCCCcccHHH
Confidence 00113599999999998531 2222222 122578999999998 999
Q ss_pred HHHHHHHHh
Q 018394 236 LLARMWEEM 244 (356)
Q Consensus 236 L~~~i~~~l 244 (356)
+.+.+.+.+
T Consensus 193 lf~~l~~~~ 201 (214)
T 3q3j_B 193 IFRTASMLC 201 (214)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999988765
No 202
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*
Probab=99.42 E-value=1.4e-13 Score=129.67 Aligned_cols=89 Identities=13% Similarity=0.145 Sum_probs=65.1
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHcCC-CCccccccccccccceEEEE-CCEeecccCccccccccccCccccccccccccc
Q 018394 19 HGRVALIGFPSVGKSTLLTLLTGTH-SEAASYEFTTLTCIPGIIHY-NDTKIQLLDLPGIIEGASEGKGRGRQVIAVSKS 96 (356)
Q Consensus 19 g~~v~LvG~~gaGKSTLln~L~g~~-~~vs~~p~TT~~~~~G~i~~-~g~~i~~~D~pGl~~~~~~~~~~~~~~~~~~~~ 96 (356)
...|+|+|.+|||||||+|.+++.. ..++++|++|++...+.+.+ ++..+.++||||........ . .......++.
T Consensus 3 ~~KI~lvG~~~vGKSSLi~~l~~~~~~~~~~~~~~Ti~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~-~-~~~~~~~~~~ 80 (307)
T 3r7w_A 3 GSKLLLMGRSGSGKSSMRSIIFSNYSAFDTRRLGATIDVEHSHLRFLGNMTLNLWDCGGQDVFMENY-F-TKQKDHIFQM 80 (307)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHSCCCTGGGGGCCCCCSEEEEEEEETTTEEEEEEEECCSHHHHHHH-H-TTTHHHHHTT
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCCCCccccCcCCccceEEEEEEeCCceEEEEEECCCcHHHhhhh-h-hhHHHHHhcc
Confidence 3589999999999999999998875 45788999999999999888 56789999999964320000 0 0111123466
Q ss_pred hhHHHHHHhcCCh
Q 018394 97 SDIVLMVLDASKS 109 (356)
Q Consensus 97 ~d~i~~v~d~~~~ 109 (356)
+|++++|+|+...
T Consensus 81 ad~vi~V~D~t~~ 93 (307)
T 3r7w_A 81 VQVLIHVFDVEST 93 (307)
T ss_dssp CSEEEEEEETTCS
T ss_pred CCEEEEEEECCCh
Confidence 7888888887654
No 203
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=99.42 E-value=2e-13 Score=118.02 Aligned_cols=82 Identities=20% Similarity=0.244 Sum_probs=54.1
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcCCCCccccccccccccceEEEECC--EeecccCccccccccccCccccccccccccch
Q 018394 20 GRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYND--TKIQLLDLPGIIEGASEGKGRGRQVIAVSKSS 97 (356)
Q Consensus 20 ~~v~LvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g--~~i~~~D~pGl~~~~~~~~~~~~~~~~~~~~~ 97 (356)
..|+++|++|||||||+|.|++...+ ..+..|+.+.....+.+++ ..+.++|+||..... . .....++.+
T Consensus 8 ~ki~v~G~~~vGKSsli~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~----~---~~~~~~~~~ 79 (184)
T 1m7b_A 8 CKIVVVGDSQCGKTALLHVFAKDCFP-ENYVPTVFENYTASFEIDTQRIELSLWDTSGSPYYD----N---VRPLSYPDS 79 (184)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSCCC-SSCCCCSEEEEEEEEECSSCEEEEEEEEECCSGGGT----T---TGGGGCTTC
T ss_pred EEEEEECCCCCCHHHHHHHHhcCCCC-CCCCCccceeEEEEEEECCEEEEEEEEECCCChhhh----h---hHHhhcCCC
Confidence 57999999999999999999986533 3344444333344555555 457789999953211 0 111235678
Q ss_pred hHHHHHHhcCCh
Q 018394 98 DIVLMVLDASKS 109 (356)
Q Consensus 98 d~i~~v~d~~~~ 109 (356)
|++++++|...+
T Consensus 80 ~~~i~v~d~~~~ 91 (184)
T 1m7b_A 80 DAVLICFDISRP 91 (184)
T ss_dssp SEEEEEEETTCH
T ss_pred cEEEEEEECCCH
Confidence 888888887664
No 204
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=99.42 E-value=3.6e-14 Score=124.35 Aligned_cols=155 Identities=22% Similarity=0.233 Sum_probs=66.9
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcCCC-Ccccccccc-ccccceEEEECC----EeecccCccccccccccCcccccccccc
Q 018394 20 GRVALIGFPSVGKSTLLTLLTGTHS-EAASYEFTT-LTCIPGIIHYND----TKIQLLDLPGIIEGASEGKGRGRQVIAV 93 (356)
Q Consensus 20 ~~v~LvG~~gaGKSTLln~L~g~~~-~vs~~p~TT-~~~~~G~i~~~g----~~i~~~D~pGl~~~~~~~~~~~~~~~~~ 93 (356)
..|+|+|++|||||||+|.|++... ..++++.|| .+.....+.+++ ..+.++||||..... ......
T Consensus 21 ~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~-------~~~~~~ 93 (208)
T 2yc2_C 21 CKVAVVGEATVGKSALISMFTSKGSKFLKDYAMTSGVEVVVAPVTIPDTTVSVELFLLDTAGSDLYK-------EQISQY 93 (208)
T ss_dssp EEEEEC----------------------------------CEEEECTTSSEEEEEEEEETTTTHHHH-------HHHSTT
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCcccCCCCCccceEEEEEEEEECCcccEEEEEEEECCCcHHHH-------HHHHHH
Confidence 5899999999999999999998742 345666665 477778888885 478899999974321 112233
Q ss_pred ccchhHHHHHHhcCChHHHHHHHHHHHHHccCccccccCcccccceeccceeeeecCCCCCCCHHHHHHHHHHhcccCcE
Q 018394 94 SKSSDIVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNAE 173 (356)
Q Consensus 94 ~~~~d~i~~v~d~~~~~~~~~~i~~~L~~~~i~l~~~~~~lS~g~~qr~~ial~~DEp~~~LD~~~~~~il~~l~~~~~~ 173 (356)
++.+|++++|+|...+... +.+..++. .+..
T Consensus 94 ~~~~d~~i~v~d~~~~~s~-~~~~~~~~--------------------------------------------~i~~---- 124 (208)
T 2yc2_C 94 WNGVYYAILVFDVSSMESF-ESCKAWFE--------------------------------------------LLKS---- 124 (208)
T ss_dssp CCCCCEEEEEEETTCHHHH-HHHHHHHH--------------------------------------------HHHH----
T ss_pred HhhCcEEEEEEECCCHHHH-HHHHHHHH--------------------------------------------HHHH----
Confidence 5678888888887764321 11212211 1110
Q ss_pred EEEccCCCHHHHHHHHhccccccceEEEeecCCCCC-h-----hhHHHHhc--CCCEEEecccc-ccchHHHHHHHHHHh
Q 018394 174 VLFREDATVDDLIDVIEGNRKYMKCVYVYNKIDVIG-I-----DDVDKLAR--QPNSVVISCNL-KLNLDRLLARMWEEM 244 (356)
Q Consensus 174 i~~thd~~~~~~~~~i~~~~~~~p~i~v~NK~Dl~~-~-----~~~~~l~~--~~~~i~iSa~~-~~~l~~L~~~i~~~l 244 (356)
.........|+++|+||+|+.. . ++...+.. ...++++||++ +.|++++.+.+.+.+
T Consensus 125 --------------~~~~~~~~~piilv~nK~Dl~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~gi~~l~~~i~~~~ 190 (208)
T 2yc2_C 125 --------------ARPDRERPLRAVLVANKTDLPPQRHQVRLDMAQDWATTNTLDFFDVSANPPGKDADAPFLSIATTF 190 (208)
T ss_dssp --------------HCSCTTSCCEEEEEEECC-------CCCHHHHHHHHHHTTCEEEECCC-------CHHHHHHHHHH
T ss_pred --------------hhcccccCCcEEEEEECcccchhhccCCHHHHHHHHHHcCCEEEEeccCCCCcCHHHHHHHHHHHH
Confidence 0000012469999999999976 2 23333332 23578999999 999999988887654
No 205
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=99.42 E-value=1.9e-13 Score=145.14 Aligned_cols=78 Identities=15% Similarity=0.150 Sum_probs=60.5
Q ss_pred HHHHHHHHccC---ccccccCcccccceecccee------------eeecCCCCCCCHHHHHHHHH---Hhc-ccCcEEE
Q 018394 115 ILTKELEAVGL---RLNKRPPQIYFKKKKTGGIS------------FNSTLPLTHVDEKLCYQILH---EYK-IHNAEVL 175 (356)
Q Consensus 115 ~i~~~L~~~~i---~l~~~~~~lS~g~~qr~~ia------------l~~DEp~~~LD~~~~~~il~---~l~-~~~~~i~ 175 (356)
...+.|+.+++ .+++++..||+||+||+.|| +++||||++||+.....+++ .+. .+.++|+
T Consensus 842 ~~~~~L~~lgL~~~~l~~~~~~LSGGekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~G~TVIv 921 (993)
T 2ygr_A 842 RYLRTLVDVGLGYVRLGQPAPTLSGGEAQRVKLASELQKRSTGRTVYILDEPTTGLHFDDIRKLLNVINGLVDKGNTVIV 921 (993)
T ss_dssp HHHHHHHHTTGGGSBTTCCGGGSCHHHHHHHHHHHHHSSCCCSSEEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEE
T ss_pred HHHHHHHHcCCCcccccCccccCCHHHHHHHHHHHHHHhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEE
Confidence 45678889998 46788999999999999887 78999999999988665554 443 3569999
Q ss_pred EccCCCHHHHHHHHhccccccceEEEe
Q 018394 176 FREDATVDDLIDVIEGNRKYMKCVYVY 202 (356)
Q Consensus 176 ~thd~~~~~~~~~i~~~~~~~p~i~v~ 202 (356)
+|||..+.. .+..++++
T Consensus 922 isHdl~~i~----------~aDrIivL 938 (993)
T 2ygr_A 922 IEHNLDVIK----------TSDWIIDL 938 (993)
T ss_dssp ECCCHHHHT----------TCSEEEEE
T ss_pred EcCCHHHHH----------hCCEEEEE
Confidence 999965422 24667777
No 206
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=99.42 E-value=1.6e-13 Score=119.84 Aligned_cols=58 Identities=28% Similarity=0.316 Sum_probs=49.7
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcCCCCccccccccccccceEEEECCEeec--ccCccccc
Q 018394 20 GRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQ--LLDLPGII 77 (356)
Q Consensus 20 ~~v~LvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~--~~D~pGl~ 77 (356)
..++|+|+||||||||+|.|+|...+....|.++.+...|.+.++|.++. ++|++|..
T Consensus 30 ~kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~ 89 (191)
T 1oix_A 30 FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLE 89 (191)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEETTEEEEEEEEEECSCC
T ss_pred eEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEECCCCc
Confidence 48999999999999999999998876666787888888999999997654 58999863
No 207
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...
Probab=99.42 E-value=1.1e-14 Score=129.85 Aligned_cols=151 Identities=13% Similarity=0.093 Sum_probs=95.5
Q ss_pred cEEEEEcCCCCcHHHHHHH-HHcCC-CCccccccccccccceEEEECCEeecccCccccccccccCccccccccccccch
Q 018394 20 GRVALIGFPSVGKSTLLTL-LTGTH-SEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQVIAVSKSS 97 (356)
Q Consensus 20 ~~v~LvG~~gaGKSTLln~-L~g~~-~~vs~~p~TT~~~~~G~i~~~g~~i~~~D~pGl~~~~~~~~~~~~~~~~~~~~~ 97 (356)
..|+|+|.+|||||||+|. +.+.. ....+.+++|.......+...+..+.++||||..... . .....++.+
T Consensus 16 ~ki~v~G~~~~GKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~----~---~~~~~~~~~ 88 (221)
T 3gj0_A 16 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFG----G---LRDGYYIQA 88 (221)
T ss_dssp EEEEEEECTTSSHHHHHTTBHHHHHTCEEETTTTEEEEEEEEEETTEEEEEEEEEECSGGGTS----C---CCHHHHTTC
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCChHHHh----H---HHHHHHhcC
Confidence 5799999999999999999 65553 3456777888776654443334567889999953211 1 111234567
Q ss_pred hHHHHHHhcCChHHHHHHHHHHHHHccCccccccCcccccceeccceeeeecCCCCCCCHHHHHHHHHHhcccCcEEEEc
Q 018394 98 DIVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNAEVLFR 177 (356)
Q Consensus 98 d~i~~v~d~~~~~~~~~~i~~~L~~~~i~l~~~~~~lS~g~~qr~~ial~~DEp~~~LD~~~~~~il~~l~~~~~~i~~t 177 (356)
|++++|+|....... +.+..++ ..+.
T Consensus 89 ~~~i~v~d~~~~~s~-~~~~~~~--------------------------------------------~~~~--------- 114 (221)
T 3gj0_A 89 QCAIIMFDVTSRVTY-KNVPNWH--------------------------------------------RDLV--------- 114 (221)
T ss_dssp CEEEEEEETTCHHHH-HTHHHHH--------------------------------------------HHHH---------
T ss_pred CEEEEEEECCCHHHH-HHHHHHH--------------------------------------------HHHH---------
Confidence 888888877664321 1111111 1110
Q ss_pred cCCCHHHHHHHHhccccccceEEEeecCCCCChhh---HHHHh--cCCCEEEeccccccchHHHHHHHHHHh
Q 018394 178 EDATVDDLIDVIEGNRKYMKCVYVYNKIDVIGIDD---VDKLA--RQPNSVVISCNLKLNLDRLLARMWEEM 244 (356)
Q Consensus 178 hd~~~~~~~~~i~~~~~~~p~i~v~NK~Dl~~~~~---~~~l~--~~~~~i~iSa~~~~~l~~L~~~i~~~l 244 (356)
......|+++|+||+|+..... ...+. ....++++||+++.|++++.+.+.+.+
T Consensus 115 -------------~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~l 173 (221)
T 3gj0_A 115 -------------RVCENIPIVLCGNKVDIKDRKVKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKL 173 (221)
T ss_dssp -------------HHSTTCCEEEEEECTTSSSCSSCGGGCCHHHHHTCEEEECBGGGTBTTTHHHHHHHHHH
T ss_pred -------------HhCCCCCEEEEEECCccccccccHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHH
Confidence 0011359999999999874321 11111 123588999999999999999888765
No 208
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=99.42 E-value=1.4e-13 Score=121.81 Aligned_cols=81 Identities=22% Similarity=0.274 Sum_probs=54.2
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHcCCCCccccccccccccceEEEEC---CEeecccCccccccccccCcccccccccccc
Q 018394 19 HGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYN---DTKIQLLDLPGIIEGASEGKGRGRQVIAVSK 95 (356)
Q Consensus 19 g~~v~LvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~---g~~i~~~D~pGl~~~~~~~~~~~~~~~~~~~ 95 (356)
...|+|+|.+|||||||++.+++.. ....++.|+.+ ...+.++ +..+.++||||....... . ....++
T Consensus 7 ~~ki~vvG~~~~GKTsli~~l~~~~-~~~~~~~~~~~--~~~~~~~~~~~~~~~i~Dt~G~~~~~~~---~---~~~~~~ 77 (214)
T 2fh5_B 7 QRAVLFVGLCDSGKTLLFVRLLTGQ-YRDTQTSITDS--SAIYKVNNNRGNSLTLIDLPGHESLRFQ---L---LDRFKS 77 (214)
T ss_dssp -CEEEEECSTTSSHHHHHHHHHHSC-CCCBCCCCSCE--EEEEECSSTTCCEEEEEECCCCHHHHHH---H---HHHHGG
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC-cccccCCccee--eEEEEecCCCccEEEEEECCCChhHHHH---H---HHHHHh
Confidence 3689999999999999999999865 33556644433 3446776 567899999996432110 0 011246
Q ss_pred chhHHHHHHhcCC
Q 018394 96 SSDIVLMVLDASK 108 (356)
Q Consensus 96 ~~d~i~~v~d~~~ 108 (356)
.+|++++|+|...
T Consensus 78 ~~~~~i~v~d~~~ 90 (214)
T 2fh5_B 78 SARAVVFVVDSAA 90 (214)
T ss_dssp GEEEEEEEEETTT
T ss_pred hCCEEEEEEECCC
Confidence 6777777777665
No 209
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=99.42 E-value=5.7e-13 Score=118.87 Aligned_cols=154 Identities=19% Similarity=0.173 Sum_probs=92.6
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcCC-CCccccccccccccceEEEECCEee--cccCccccccccccCccccccccccccc
Q 018394 20 GRVALIGFPSVGKSTLLTLLTGTH-SEAASYEFTTLTCIPGIIHYNDTKI--QLLDLPGIIEGASEGKGRGRQVIAVSKS 96 (356)
Q Consensus 20 ~~v~LvG~~gaGKSTLln~L~g~~-~~vs~~p~TT~~~~~G~i~~~g~~i--~~~D~pGl~~~~~~~~~~~~~~~~~~~~ 96 (356)
..|+|+|.+|||||||+|.+++.. ..++++|.|+.+.....+.++|..+ .++||+|..... ..+ . ...++.
T Consensus 38 ~kVvlvG~~~vGKSSLl~r~~~~~~~~~~~~~~~g~d~~~~~i~~~~~~~~l~~~Dt~g~~~~~---~~l-~--~~~~~~ 111 (211)
T 2g3y_A 38 YRVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTLMVDGESATIILLDMWENKGEN---EWL-H--DHCMQV 111 (211)
T ss_dssp EEEEEECCTTSSHHHHHHHHHCCCCTTCCC---CCTTEEEEEEEETTEEEEEEEECCTTTTHHH---HHH-H--HCCCCC
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCCCCcCCccceeeEEEEEEECCeeeEEEEeecCCCcchh---hhH-H--HHHHhh
Confidence 479999999999999999999865 3456777777777777888888764 567998753210 000 0 112344
Q ss_pred hhHHHHHHhcCChHHHHHHHHHHHHHccCccccccCcccccceeccceeeeecCCCCCCCHHHHHHHHHHhcccCcEEEE
Q 018394 97 SDIVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNAEVLF 176 (356)
Q Consensus 97 ~d~i~~v~d~~~~~~~~~~i~~~L~~~~i~l~~~~~~lS~g~~qr~~ial~~DEp~~~LD~~~~~~il~~l~~~~~~i~~ 176 (356)
+|.+++|+|...... .+.+..++ ..+..
T Consensus 112 a~~~ilVydvt~~~s-f~~~~~~~--------------------------------------------~~l~~------- 139 (211)
T 2g3y_A 112 GDAYLIVYSITDRAS-FEKASELR--------------------------------------------IQLRR------- 139 (211)
T ss_dssp CSEEEEEEETTCHHH-HHHHHHHH--------------------------------------------HHHHT-------
T ss_pred CCEEEEEEECCCHHH-HHHHHHHH--------------------------------------------HHHHH-------
Confidence 555555655544321 11111111 11000
Q ss_pred ccCCCHHHHHHHHhccccccceEEEeecCCCCCh-----hhHHHHhc--CCCEEEeccccccchHHHHHHHHHHh
Q 018394 177 REDATVDDLIDVIEGNRKYMKCVYVYNKIDVIGI-----DDVDKLAR--QPNSVVISCNLKLNLDRLLARMWEEM 244 (356)
Q Consensus 177 thd~~~~~~~~~i~~~~~~~p~i~v~NK~Dl~~~-----~~~~~l~~--~~~~i~iSa~~~~~l~~L~~~i~~~l 244 (356)
.. .....|+++|.||+|+... ++...+.. ...++++||++|.|++++.+.+.+.+
T Consensus 140 ------------~~-~~~~~piilVgNK~DL~~~r~v~~~e~~~~a~~~~~~~~e~SAk~g~~v~elf~~l~~~i 201 (211)
T 2g3y_A 140 ------------AR-QTEDIPIILVGNKSDLVRCREVSVSEGRACAVVFDCKFIETSAAVQHNVKELFEGIVRQV 201 (211)
T ss_dssp ------------SG-GGTTSCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEECBTTTTBSHHHHHHHHHHHH
T ss_pred ------------Hh-CCCCCcEEEEEEChHHhcCceEeHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHH
Confidence 00 0113699999999998632 11122211 23578999999999999999887765
No 210
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=99.41 E-value=8.1e-14 Score=117.91 Aligned_cols=154 Identities=20% Similarity=0.210 Sum_probs=87.7
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcCCCCccccccccccccceEEEECCE--eecccCccccccccccCccccccccccccch
Q 018394 20 GRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDT--KIQLLDLPGIIEGASEGKGRGRQVIAVSKSS 97 (356)
Q Consensus 20 ~~v~LvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~--~i~~~D~pGl~~~~~~~~~~~~~~~~~~~~~ 97 (356)
..|+++|++|||||||+|.|++...... +..|+-......+.+++. .+.++||||..... ......++.+
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~~~~~~~-~~~t~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~-------~~~~~~~~~~ 75 (172)
T 2erx_A 4 YRVAVFGAGGVGKSSLVLRFVKGTFRES-YIPTVEDTYRQVISCDKSICTLQITDTTGSHQFP-------AMQRLSISKG 75 (172)
T ss_dssp EEEEEECCTTSSHHHHHHHHHTCCCCSS-CCCCSCEEEEEEEEETTEEEEEEEEECCSCSSCH-------HHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCC-CCCCccccEEEEEEECCEEEEEEEEECCCchhhH-------HHHHHhcccC
Confidence 5799999999999999999998653211 212211222233455553 57889999953211 0111123445
Q ss_pred hHHHHHHhcCChHHHHHHHHHHHHHccCccccccCcccccceeccceeeeecCCCCCCCHHHHHHHHHHhcccCcEEEEc
Q 018394 98 DIVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNAEVLFR 177 (356)
Q Consensus 98 d~i~~v~d~~~~~~~~~~i~~~L~~~~i~l~~~~~~lS~g~~qr~~ial~~DEp~~~LD~~~~~~il~~l~~~~~~i~~t 177 (356)
|.+++++|...+... +.+. .++..+.
T Consensus 76 ~~~i~v~d~~~~~~~-~~~~--------------------------------------------~~~~~i~--------- 101 (172)
T 2erx_A 76 HAFILVYSITSRQSL-EELK--------------------------------------------PIYEQIC--------- 101 (172)
T ss_dssp SEEEEEEETTCHHHH-HTTH--------------------------------------------HHHHHHH---------
T ss_pred CEEEEEEECcCHHHH-HHHH--------------------------------------------HHHHHHH---------
Confidence 666666665543211 1111 1111100
Q ss_pred cCCCHHHHHHHHhccccccceEEEeecCCCCChh-----hHHHHhc--CCCEEEeccccccchHHHHHHHHHHhC
Q 018394 178 EDATVDDLIDVIEGNRKYMKCVYVYNKIDVIGID-----DVDKLAR--QPNSVVISCNLKLNLDRLLARMWEEMG 245 (356)
Q Consensus 178 hd~~~~~~~~~i~~~~~~~p~i~v~NK~Dl~~~~-----~~~~l~~--~~~~i~iSa~~~~~l~~L~~~i~~~l~ 245 (356)
.........|+++|+||+|+.... +...+.. ..+++++||+++.|++++.+.+.+.+.
T Consensus 102 ----------~~~~~~~~~pii~v~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~ 166 (172)
T 2erx_A 102 ----------EIKGDVESIPIMLVGNKCDESPSREVQSSEAEALARTWKCAFMETSAKLNHNVKELFQELLNLEK 166 (172)
T ss_dssp ----------HHHC---CCCEEEEEECGGGGGGCCSCHHHHHHHHHHHTCEEEECBTTTTBSHHHHHHHHHHTCC
T ss_pred ----------HHhCCCCCCCEEEEEEccccccccccCHHHHHHHHHHhCCeEEEecCCCCcCHHHHHHHHHHHHh
Confidence 000011236999999999986432 2222221 235789999999999999999988664
No 211
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=99.41 E-value=1.1e-14 Score=139.13 Aligned_cols=34 Identities=29% Similarity=0.332 Sum_probs=29.3
Q ss_pred CCCeEEEecCCcEEEEEcCCCCcHHHHHHHHHcCCC
Q 018394 9 GEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHS 44 (356)
Q Consensus 9 ~~s~~v~~~~g~~v~LvG~~gaGKSTLln~L~g~~~ 44 (356)
+++|++.+ +.+++|+|+||||||||+|+|+|...
T Consensus 47 ~i~~~~~~--g~~v~i~G~~GaGKSTLl~~l~g~~~ 80 (337)
T 2qm8_A 47 AVLPQTGR--AIRVGITGVPGVGKSTTIDALGSLLT 80 (337)
T ss_dssp HHGGGCCC--SEEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred hCCcccCC--CeEEEEECCCCCCHHHHHHHHHHhhh
Confidence 46677777 78999999999999999999997653
No 212
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=99.41 E-value=1e-14 Score=142.62 Aligned_cols=141 Identities=15% Similarity=0.009 Sum_probs=80.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCccccccccccccceEEEECCEeecccCccccccccccCccccccccccccchhHH
Q 018394 21 RVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQVIAVSKSSDIV 100 (356)
Q Consensus 21 ~v~LvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~~D~pGl~~~~~~~~~~~~~~~~~~~~~d~i 100 (356)
.+||+|+||||||||+|+|+|...+ ..|.+.++|.++.. .++..... ...+ + .-.|.+
T Consensus 71 ~valvG~nGaGKSTLln~L~Gl~~p-----------~~GsI~~~g~~~t~---~~~v~q~~----~~~~-l---tv~D~~ 128 (413)
T 1tq4_A 71 NVAVTGETGSGKSSFINTLRGIGNE-----------EEGAAKTGVVEVTM---ERHPYKHP----NIPN-V---VFWDLP 128 (413)
T ss_dssp EEEEEECTTSSHHHHHHHHHTCCTT-----------STTSCCCCC----C---CCEEEECS----SCTT-E---EEEECC
T ss_pred EEEEECCCCCcHHHHHHHHhCCCCc-----------cCceEEECCeecce---eEEecccc----ccCC-e---eehHhh
Confidence 9999999999999999999998765 44555444433210 01110000 0000 0 000000
Q ss_pred HHHHhcCChHHHHHHHHHHHHHccC-ccccccCccccc--ceecccee-------------------eeecCCCCCCCHH
Q 018394 101 LMVLDASKSEGHRQILTKELEAVGL-RLNKRPPQIYFK--KKKTGGIS-------------------FNSTLPLTHVDEK 158 (356)
Q Consensus 101 ~~v~d~~~~~~~~~~i~~~L~~~~i-~l~~~~~~lS~g--~~qr~~ia-------------------l~~DEp~~~LD~~ 158 (356)
-+. . ....+.+.|+.+++ ..+..+. +|+| ++|++.++ +++||||++||+.
T Consensus 129 g~~-~------~~~~~~~~L~~~~L~~~~~~~~-lS~G~~~kqrv~la~aL~~~~~p~~lV~tkpdlllLDEPtsgLD~~ 200 (413)
T 1tq4_A 129 GIG-S------TNFPPDTYLEKMKFYEYDFFII-ISATRFKKNDIDIAKAISMMKKEFYFVRTKVDSDITNEADGEPQTF 200 (413)
T ss_dssp CGG-G------SSCCHHHHHHHTTGGGCSEEEE-EESSCCCHHHHHHHHHHHHTTCEEEEEECCHHHHHHHHHTTCCTTC
T ss_pred ccc-c------hHHHHHHHHHHcCCCccCCeEE-eCCCCccHHHHHHHHHHHhcCCCeEEEEecCcccccCcccccCCHH
Confidence 000 0 01134566777776 3333333 8988 88888775 5789999999986
Q ss_pred H---HHHHHHHhc-----c-----cCcEEEEccCCC---HHHHHHHHhc
Q 018394 159 L---CYQILHEYK-----I-----HNAEVLFREDAT---VDDLIDVIEG 191 (356)
Q Consensus 159 ~---~~~il~~l~-----~-----~~~~i~~thd~~---~~~~~~~i~~ 191 (356)
. +.++++.+. . ..++++++|+.+ .+++++.+..
T Consensus 201 ~~~~l~~~l~~l~~~~l~~~g~~~~~iiliSsh~l~~~~~e~L~d~I~~ 249 (413)
T 1tq4_A 201 DKEKVLQDIRLNCVNTFRENGIAEPPIFLLSNKNVCHYDFPVLMDKLIS 249 (413)
T ss_dssp CHHHHHHHHHHHHHHHHHHTTCSSCCEEECCTTCTTSTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCCCcEEEEecCcCCccCHHHHHHHHHH
Confidence 5 444444442 1 124667888755 6777887754
No 213
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.41 E-value=1.8e-13 Score=119.46 Aligned_cols=152 Identities=18% Similarity=0.167 Sum_probs=95.4
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHcCCCCccccccccccccceEEEECCE--eecccCccccccccccCccccccccccccc
Q 018394 19 HGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDT--KIQLLDLPGIIEGASEGKGRGRQVIAVSKS 96 (356)
Q Consensus 19 g~~v~LvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~--~i~~~D~pGl~~~~~~~~~~~~~~~~~~~~ 96 (356)
...|+|+|.+|||||||+|.|++... ...++.|+.+.....+.+++. .+.++|+||... . ......++.
T Consensus 28 ~~ki~v~G~~~vGKSsli~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~-----~---~~~~~~~~~ 98 (196)
T 2atv_A 28 EVKLAIFGRAGVGKSALVVRFLTKRF-IWEYDPTLESTYRHQATIDDEVVSMEILDTAGQED-----T---IQREGHMRW 98 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHSCC-CSCCCTTCCEEEEEEEEETTEEEEEEEEECCCCCC-----C---HHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCCC-CcccCCCCCceEEEEEEECCEEEEEEEEECCCCCc-----c---cchhhhhcc
Confidence 46899999999999999999998653 234555555555556777764 578899999643 0 111123455
Q ss_pred hhHHHHHHhcCChHHHHHHHHHHHHHccCccccccCcccccceeccceeeeecCCCCCCCHHHHHHHHHHhcccCcEEEE
Q 018394 97 SDIVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNAEVLF 176 (356)
Q Consensus 97 ~d~i~~v~d~~~~~~~~~~i~~~L~~~~i~l~~~~~~lS~g~~qr~~ial~~DEp~~~LD~~~~~~il~~l~~~~~~i~~ 176 (356)
+|++++|+|...+.. .+.+..++ ..+.
T Consensus 99 ~d~iilv~D~~~~~s-~~~~~~~~--------------------------------------------~~i~-------- 125 (196)
T 2atv_A 99 GEGFVLVYDITDRGS-FEEVLPLK--------------------------------------------NILD-------- 125 (196)
T ss_dssp CSEEEEEEETTCHHH-HHTHHHHH--------------------------------------------HHHH--------
T ss_pred CCEEEEEEECcCHHH-HHHHHHHH--------------------------------------------HHHH--------
Confidence 677777777665422 11111111 1110
Q ss_pred ccCCCHHHHHHHHhccccccceEEEeecCCCCCh-----hhHHHHhc--CCCEEEecccccc-chHHHHHHHHHHh
Q 018394 177 REDATVDDLIDVIEGNRKYMKCVYVYNKIDVIGI-----DDVDKLAR--QPNSVVISCNLKL-NLDRLLARMWEEM 244 (356)
Q Consensus 177 thd~~~~~~~~~i~~~~~~~p~i~v~NK~Dl~~~-----~~~~~l~~--~~~~i~iSa~~~~-~l~~L~~~i~~~l 244 (356)
... .....|+++|+||+|+... ++...+.. ..+++++||+++. |++++.+.+.+.+
T Consensus 126 ----------~~~--~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~g~~gi~~l~~~l~~~i 189 (196)
T 2atv_A 126 ----------EIK--KPKNVTLILVGNKADLDHSRQVSTEEGEKLATELACAFYECSACTGEGNITEIFYELCREV 189 (196)
T ss_dssp ----------HHH--TTSCCCEEEEEECGGGGGGCCSCHHHHHHHHHHHTSEEEECCTTTCTTCHHHHHHHHHHHH
T ss_pred ----------Hhh--CCCCCcEEEEEECcccccccccCHHHHHHHHHHhCCeEEEECCCcCCcCHHHHHHHHHHHH
Confidence 000 0124699999999998642 22233321 2357899999999 9999999887654
No 214
>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae}
Probab=99.40 E-value=5.6e-14 Score=144.17 Aligned_cols=83 Identities=19% Similarity=0.221 Sum_probs=66.3
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHcCCCCccc-------------------------------cccccccccceEEEECCEe
Q 018394 19 HGRVALIGFPSVGKSTLLTLLTGTHSEAAS-------------------------------YEFTTLTCIPGIIHYNDTK 67 (356)
Q Consensus 19 g~~v~LvG~~gaGKSTLln~L~g~~~~vs~-------------------------------~p~TT~~~~~G~i~~~g~~ 67 (356)
...|+|+|.+|||||||+|.|++....+.. .+|+|++.....+...+..
T Consensus 167 ~lkV~ivG~~n~GKSTLin~Ll~~~~~i~~~~i~~~~~~~~~~g~~~~~~a~~~d~~~~e~~~GiTid~~~~~~~~~~~~ 246 (611)
T 3izq_1 167 HLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFSTHRAN 246 (611)
T ss_dssp CCEEEEECCSSSCHHHHHHHHHSCSSCSCCHHHHHHHHHSSCSSSSCCSSSHHHHHHHHHHHTTTCCSCSCCEEECSSCE
T ss_pred ceEEEEEECCCCCHHHHHHHHHHhcCCccHHHHHHHHhhhhhccccccceeeeeccchhhhhCCeeEeeeeEEEecCCce
Confidence 468999999999999999999987544333 3799999999999999999
Q ss_pred ecccCccccccccccCccccccccccccchhHHHHHHhcCC
Q 018394 68 IQLLDLPGIIEGASEGKGRGRQVIAVSKSSDIVLMVLDASK 108 (356)
Q Consensus 68 i~~~D~pGl~~~~~~~~~~~~~~~~~~~~~d~i~~v~d~~~ 108 (356)
+.++||||.... .......++.+|++++|+|+..
T Consensus 247 ~~iiDTPG~e~f-------~~~~~~~~~~aD~~llVVDa~~ 280 (611)
T 3izq_1 247 FTIVDAPGHRDF-------VPNAIMGISQADMAILCVDCST 280 (611)
T ss_dssp EEEEECCSSSCH-------HHHHTTTSSCCSEEEEEEECSH
T ss_pred EEEEECCCCccc-------HHHHHHHHhhcCceEEEEECCC
Confidence 999999996431 2334445677899999988765
No 215
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=99.40 E-value=8.4e-14 Score=120.62 Aligned_cols=51 Identities=14% Similarity=0.077 Sum_probs=36.7
Q ss_pred ccceEEEeecCCCCChhhH--------HHHhc-C-CC----EEEecccccc-chHHHHHHHHHHhC
Q 018394 195 YMKCVYVYNKIDVIGIDDV--------DKLAR-Q-PN----SVVISCNLKL-NLDRLLARMWEEMG 245 (356)
Q Consensus 195 ~~p~i~v~NK~Dl~~~~~~--------~~l~~-~-~~----~i~iSa~~~~-~l~~L~~~i~~~l~ 245 (356)
..|+++|.||+|+...... ..+.. . .. ++++||+++. ++++|.+.|.+.+.
T Consensus 112 ~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~~~~~l~~~i~~~~~ 177 (184)
T 2zej_A 112 SSPVILVGTHLDVSDEKQRKACMSKITKELLNKRGFPAIRDYHFVNATEESDALAKLRKTIINESL 177 (184)
T ss_dssp TCEEEEEEECGGGCCHHHHHHHHHHHHHHTTTCTTSCEEEEEEECCTTSCCHHHHHHHHHHHHHHH
T ss_pred CCcEEEEEECCCcccchhhHHHHHHHHHHHHHhcCCcchhheEEEecccCchhHHHHHHHHHHHHh
Confidence 3589999999999765432 12221 1 12 7889999996 99999999987653
No 216
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=99.40 E-value=2.9e-13 Score=119.80 Aligned_cols=82 Identities=20% Similarity=0.242 Sum_probs=54.8
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcCCCCccccccccccccceEEEECC--EeecccCccccccccccCccccccccccccch
Q 018394 20 GRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYND--TKIQLLDLPGIIEGASEGKGRGRQVIAVSKSS 97 (356)
Q Consensus 20 ~~v~LvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g--~~i~~~D~pGl~~~~~~~~~~~~~~~~~~~~~ 97 (356)
..|+|+|++|||||||+|.|++.... .++..|+.......+.+++ ..+.++||||..... .. ....++.+
T Consensus 29 ~ki~vvG~~~vGKSsLi~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~----~~---~~~~~~~~ 100 (205)
T 1gwn_A 29 CKIVVVGDSQCGKTALLHVFAKDCFP-ENYVPTVFENYTASFEIDTQRIELSLWDTSGSPYYD----NV---RPLSYPDS 100 (205)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSCCC-SSCCCCSEEEEEEEEESSSSEEEEEEEEECCSGGGT----TT---GGGGCTTC
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCC-CCcCCccceeEEEEEEECCEEEEEEEEeCCCcHhhh----HH---HHhhccCC
Confidence 58999999999999999999987543 3344444333344555555 467889999953221 11 11235678
Q ss_pred hHHHHHHhcCCh
Q 018394 98 DIVLMVLDASKS 109 (356)
Q Consensus 98 d~i~~v~d~~~~ 109 (356)
|++++++|....
T Consensus 101 d~~ilv~D~~~~ 112 (205)
T 1gwn_A 101 DAVLICFDISRP 112 (205)
T ss_dssp SEEEEEEETTCH
T ss_pred CEEEEEEECCCH
Confidence 888888887764
No 217
>3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus}
Probab=99.40 E-value=1.3e-13 Score=136.15 Aligned_cols=84 Identities=21% Similarity=0.236 Sum_probs=62.4
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHcCCCC-------------------------------ccccccccccccceEEEECCEe
Q 018394 19 HGRVALIGFPSVGKSTLLTLLTGTHSE-------------------------------AASYEFTTLTCIPGIIHYNDTK 67 (356)
Q Consensus 19 g~~v~LvG~~gaGKSTLln~L~g~~~~-------------------------------vs~~p~TT~~~~~G~i~~~g~~ 67 (356)
...|+++|.+|+|||||+|.|++.... ....+|+|++.....+..++..
T Consensus 17 ~~~i~iiG~~d~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTid~~~~~~~~~~~~ 96 (439)
T 3j2k_7 17 HVNVVFIGHVDAGKSTIGGQIMYLTGMVDKRTLEKYEREAKEKNRETWYLSWALDTNQEERDKGKTVEVGRAYFETEKKH 96 (439)
T ss_pred eeEEEEEeCCCCCHHHHHHHHHHHcCCCchHHHHHHHHHHHhccccchhhhhhhccchhHhhcCceEEEeEEEEecCCeE
Confidence 468999999999999999999654211 1112688999888888889999
Q ss_pred ecccCccccccccccCccccccccccccchhHHHHHHhcCCh
Q 018394 68 IQLLDLPGIIEGASEGKGRGRQVIAVSKSSDIVLMVLDASKS 109 (356)
Q Consensus 68 i~~~D~pGl~~~~~~~~~~~~~~~~~~~~~d~i~~v~d~~~~ 109 (356)
+.++||||.... .......++.+|++++|+|+...
T Consensus 97 ~~iiDTPGh~~f-------~~~~~~~~~~aD~~ilVVDa~~g 131 (439)
T 3j2k_7 97 FTILDAPGHKSF-------VPNMIGGASQADLAVLVISARKG 131 (439)
T ss_pred EEEEECCChHHH-------HHHHHhhHhhCCEEEEEEECCCC
Confidence 999999996432 12233345678888888887653
No 218
>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*
Probab=99.39 E-value=2.1e-13 Score=128.44 Aligned_cols=84 Identities=18% Similarity=0.209 Sum_probs=63.2
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHcCCCCccccccccccccceEEEECCEeec--ccCccccccccccCccccccccccccc
Q 018394 19 HGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQ--LLDLPGIIEGASEGKGRGRQVIAVSKS 96 (356)
Q Consensus 19 g~~v~LvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~--~~D~pGl~~~~~~~~~~~~~~~~~~~~ 96 (356)
...|+++|.+|||||||++.+++... ...++.||.+.....+.+++..+. ++||||..... ......++.
T Consensus 155 ~~~i~i~G~~~~GKssli~~~~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~-------~~~~~~~~~ 226 (332)
T 2wkq_A 155 LIKCVVVGDGAVGKTCLLISYTTNAF-PGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGLEDYD-------RLRPLSYPQ 226 (332)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHSCC-CCSCCCCSEEEEEEEEEETTEEEEEEEEEECCCGGGT-------TTGGGGCTT
T ss_pred eeEEEEECCCCCChHHHHHHHHhCCC-CcccCCcccceeEEEEEECCEEEEEEEEeCCCchhhh-------HHHHHhccC
Confidence 35899999999999999999997543 467788888888888888887655 89999964321 111223567
Q ss_pred hhHHHHHHhcCChH
Q 018394 97 SDIVLMVLDASKSE 110 (356)
Q Consensus 97 ~d~i~~v~d~~~~~ 110 (356)
+|++++|+|...+.
T Consensus 227 ~d~~i~v~d~~~~~ 240 (332)
T 2wkq_A 227 TDVFLICFSLVSPA 240 (332)
T ss_dssp CSEEEEEEETTCHH
T ss_pred CCEEEEEEeCCCHH
Confidence 88888888877643
No 219
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=99.39 E-value=1.6e-13 Score=121.67 Aligned_cols=152 Identities=18% Similarity=0.161 Sum_probs=89.3
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcCCCCccccccccccccceEEEE-C-C--EeecccCccccccccccCcccccccccccc
Q 018394 20 GRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHY-N-D--TKIQLLDLPGIIEGASEGKGRGRQVIAVSK 95 (356)
Q Consensus 20 ~~v~LvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~-~-g--~~i~~~D~pGl~~~~~~~~~~~~~~~~~~~ 95 (356)
..|+|+|.+|||||||+|.|++.... ..+..|+-......... . + ..+.++||||..... ......++
T Consensus 12 ~ki~vvG~~~~GKSsli~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~-------~~~~~~~~ 83 (218)
T 4djt_A 12 YKICLIGDGGVGKTTYINRVLDGRFE-KNYNATVGAVNHPVTFLDDQGNVIKFNVWDTAGQEKKA-------VLKDVYYI 83 (218)
T ss_dssp EEEEEECCTTSSHHHHHCBCTTCSTT-CEEETTTTEEEEEEEEEBTTSCEEEEEEEEECSGGGTS-------CCCHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHhcCCCC-CCCCCccceeeEEEEEEeCCCcEEEEEEEecCCchhhc-------hHHHHHhh
Confidence 58999999999999999999976532 22222221112122222 2 2 568889999964321 11112345
Q ss_pred chhHHHHHHhcCChHHHHHHHHHHHHHccCccccccCcccccceeccceeeeecCCCCCCCHHHHHHHHHHhcccCcEEE
Q 018394 96 SSDIVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNAEVL 175 (356)
Q Consensus 96 ~~d~i~~v~d~~~~~~~~~~i~~~L~~~~i~l~~~~~~lS~g~~qr~~ial~~DEp~~~LD~~~~~~il~~l~~~~~~i~ 175 (356)
.+|++++++|....... +.+..++ ..+.
T Consensus 84 ~~d~~i~v~d~~~~~s~-~~~~~~~--------------------------------------------~~~~------- 111 (218)
T 4djt_A 84 GASGAILFFDVTSRITC-QNLARWV--------------------------------------------KEFQ------- 111 (218)
T ss_dssp TCSEEEEEEETTCHHHH-HTHHHHH--------------------------------------------HHHH-------
T ss_pred cCCEEEEEEeCCCHHHH-HHHHHHH--------------------------------------------HHHH-------
Confidence 67888888887664321 1111111 1110
Q ss_pred EccCCCHHHHHHHHhccccccceEEEeecCCCCChhh-----HHHHhc--CCCEEEeccccccchHHHHHHHHHHhC
Q 018394 176 FREDATVDDLIDVIEGNRKYMKCVYVYNKIDVIGIDD-----VDKLAR--QPNSVVISCNLKLNLDRLLARMWEEMG 245 (356)
Q Consensus 176 ~thd~~~~~~~~~i~~~~~~~p~i~v~NK~Dl~~~~~-----~~~l~~--~~~~i~iSa~~~~~l~~L~~~i~~~l~ 245 (356)
... ....|+++|+||+|+..... ...+.. ...++++||++|.|++++.+.+.+.+.
T Consensus 112 ------------~~~--~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~~~ 174 (218)
T 4djt_A 112 ------------AVV--GNEAPIVVCANKIDIKNRQKISKKLVMEVLKGKNYEYFEISAKTAHNFGLPFLHLARIFT 174 (218)
T ss_dssp ------------HHH--CSSSCEEEEEECTTCC----CCHHHHHHHTTTCCCEEEEEBTTTTBTTTHHHHHHHHHHH
T ss_pred ------------Hhc--CCCCCEEEEEECCCCccccccCHHHHHHHHHHcCCcEEEEecCCCCCHHHHHHHHHHHHh
Confidence 000 11369999999999975421 223322 234899999999999999999987664
No 220
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=99.39 E-value=7.3e-14 Score=129.38 Aligned_cols=58 Identities=22% Similarity=0.271 Sum_probs=38.1
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcCCCCccccc------cccccccceEEEE--CCE--eecccCccccc
Q 018394 20 GRVALIGFPSVGKSTLLTLLTGTHSEAASYE------FTTLTCIPGIIHY--NDT--KIQLLDLPGII 77 (356)
Q Consensus 20 ~~v~LvG~~gaGKSTLln~L~g~~~~vs~~p------~TT~~~~~G~i~~--~g~--~i~~~D~pGl~ 77 (356)
..|+|+|.+|||||||+|+|++......++| .+|+++......+ +|. .+.++||||+.
T Consensus 9 ~~I~vvG~~g~GKSTLin~L~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~liDTpG~~ 76 (274)
T 3t5d_A 9 FTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFG 76 (274)
T ss_dssp EEEEEEECTTSSHHHHHHHHSSSCC---------------CCCEEEEEEECC--CCEEEEEEECCCCS
T ss_pred EEEEEECCCCCCHHHHHHHHhCCCccccCCCCcccccCCceEEEEEEEEEecCCeEEEEEEEECCCcc
Confidence 5799999999999999999999887666664 5555555444444 453 78899999974
No 221
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.38 E-value=6e-13 Score=115.81 Aligned_cols=156 Identities=17% Similarity=0.192 Sum_probs=89.6
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHcCCCCccccccccccccceEEEECCE--eecccCccccccccccCccccccccccccc
Q 018394 19 HGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDT--KIQLLDLPGIIEGASEGKGRGRQVIAVSKS 96 (356)
Q Consensus 19 g~~v~LvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~--~i~~~D~pGl~~~~~~~~~~~~~~~~~~~~ 96 (356)
...|+|+|++|||||||+|.|++..... .+..|+-....-.+.+++. .+.++||||..... ......++.
T Consensus 8 ~~ki~vvG~~~~GKSsli~~l~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~-------~~~~~~~~~ 79 (199)
T 2gf0_A 8 DYRVVVFGAGGVGKSSLVLRFVKGTFRD-TYIPTIEDTYRQVISCDKSVCTLQITDTTGSHQFP-------AMQRLSISK 79 (199)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHSCCCC-TTSCCCCEEEEEEEEETTEEEEEEEEECCGGGSCH-------HHHHHHHHH
T ss_pred eeEEEEECCCCCcHHHHHHHHHcCCCCC-cccCccccceeEEEEECCEEEEEEEEeCCChHHhH-------HHHHHhhcc
Confidence 4689999999999999999999865321 1211211112233445554 57889999953211 001112344
Q ss_pred hhHHHHHHhcCChHHHHHHHHHHHHHccCccccccCcccccceeccceeeeecCCCCCCCHHHHHHHHHHhcccCcEEEE
Q 018394 97 SDIVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNAEVLF 176 (356)
Q Consensus 97 ~d~i~~v~d~~~~~~~~~~i~~~L~~~~i~l~~~~~~lS~g~~qr~~ial~~DEp~~~LD~~~~~~il~~l~~~~~~i~~ 176 (356)
+|++++++|...+... +.+..++ ..+..
T Consensus 80 ~d~~i~v~d~~~~~s~-~~~~~~~-----------------------------------------~~i~~---------- 107 (199)
T 2gf0_A 80 GHAFILVFSVTSKQSL-EELGPIY-----------------------------------------KLIVQ---------- 107 (199)
T ss_dssp CSEEEEEEETTCHHHH-HTTHHHH-----------------------------------------HHHHH----------
T ss_pred CCEEEEEEECcCHHHH-HHHHHHH-----------------------------------------HHHHH----------
Confidence 5666666665543211 1010000 00111
Q ss_pred ccCCCHHHHHHHHhccccccceEEEeecCCCCCh----hhHHHHhc--CCCEEEeccccccchHHHHHHHHHHhCc
Q 018394 177 REDATVDDLIDVIEGNRKYMKCVYVYNKIDVIGI----DDVDKLAR--QPNSVVISCNLKLNLDRLLARMWEEMGL 246 (356)
Q Consensus 177 thd~~~~~~~~~i~~~~~~~p~i~v~NK~Dl~~~----~~~~~l~~--~~~~i~iSa~~~~~l~~L~~~i~~~l~~ 246 (356)
+.......|+++|+||+|+... ++...+.. ...++++||++|.|+++|.+.+.+.+..
T Consensus 108 ------------~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~ 171 (199)
T 2gf0_A 108 ------------IKGSVEDIPVMLVGNKCDETQREVDTREAQAVAQEWKCAFMETSAKMNYNVKELFQELLTLETR 171 (199)
T ss_dssp ------------HHSCGGGSCEEEEEECTTCSSCSSCHHHHHHHHHHHTCEEEECBTTTTBSHHHHHHHHHHHCSS
T ss_pred ------------HhcCCCCCCEEEEEECccCCccccCHHHHHHHHHHhCCeEEEEecCCCCCHHHHHHHHHHHHhh
Confidence 1111124699999999998742 22222221 2357899999999999999999887653
No 222
>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus}
Probab=99.38 E-value=2.7e-14 Score=143.86 Aligned_cols=151 Identities=21% Similarity=0.181 Sum_probs=103.9
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHcCCCCccccccccccccceEEEE-CCEeecccCccccccccccCccccccccccccch
Q 018394 19 HGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHY-NDTKIQLLDLPGIIEGASEGKGRGRQVIAVSKSS 97 (356)
Q Consensus 19 g~~v~LvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~-~g~~i~~~D~pGl~~~~~~~~~~~~~~~~~~~~~ 97 (356)
...|+|+|.+|+|||||+++|++........|++|.+.....+.+ ++..+.++||||..... ......++.+
T Consensus 4 ~pkV~IvG~~~vGKTSLl~~L~~~~~~~~~~~giT~~i~~~~v~~~~g~~i~~iDTPGhe~f~-------~~~~~~~~~a 76 (537)
T 3izy_P 4 SPVVTIMGHVDHGKTTLLDKLRKTQVAAMEAGGITQHIGAFLVSLPSGEKITFLDTPGHAAFS-------AMRARGTQVT 76 (537)
T ss_dssp CCBCEEEESTTTTHHHHHHHHHHHHHHHSSSCCBCCCTTSCCBCSSCSSCCBCEECSSSCCTT-------TSBBSSSBSB
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCcccccCCceeEEEeEEEEEeCCCCEEEEEECCChHHHH-------HHHHHHHccC
Confidence 358999999999999999999987755567899999998888877 57789999999953211 1122235668
Q ss_pred hHHHHHHhcCChHHHHHHHHHHHHHccCccccccCcccccceeccceeeeecCCCCCCCHHHHHHHHHHhcccCcEEEEc
Q 018394 98 DIVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNAEVLFR 177 (356)
Q Consensus 98 d~i~~v~d~~~~~~~~~~i~~~L~~~~i~l~~~~~~lS~g~~qr~~ial~~DEp~~~LD~~~~~~il~~l~~~~~~i~~t 177 (356)
|++++|+|+........ . +.+..
T Consensus 77 D~vILVVDa~dg~~~qt-~---------------------------------------------e~l~~----------- 99 (537)
T 3izy_P 77 DIVILVVAADDGVMKQT-V---------------------------------------------ESIQH----------- 99 (537)
T ss_dssp SSCEEECBSSSCCCHHH-H---------------------------------------------HHHHH-----------
T ss_pred CEEEEEEECCCCccHHH-H---------------------------------------------HHHHH-----------
Confidence 88888888765321110 0 00110
Q ss_pred cCCCHHHHHHHHhccccccceEEEeecCCCCChh------hHHHHh----cC---CCEEEeccccccchHHHHHHHHHHh
Q 018394 178 EDATVDDLIDVIEGNRKYMKCVYVYNKIDVIGID------DVDKLA----RQ---PNSVVISCNLKLNLDRLLARMWEEM 244 (356)
Q Consensus 178 hd~~~~~~~~~i~~~~~~~p~i~v~NK~Dl~~~~------~~~~l~----~~---~~~i~iSa~~~~~l~~L~~~i~~~l 244 (356)
+. ....|+++|+||+|+.... ++.... .+ .+++++||++|.|+++|.+.+...+
T Consensus 100 -----------~~--~~~vPiIVViNKiDl~~~~~~~v~~~l~~~~~~~e~~~~~~~iv~vSAktG~GI~eLle~I~~l~ 166 (537)
T 3izy_P 100 -----------AK--DAHVPIVLAINKCDKAEADPEKVKKELLAYDVVCEDYGGDVQAVHVSALTGENMMALAEATIALA 166 (537)
T ss_dssp -----------HH--TTTCCEEECCBSGGGTTTSCCSSSSHHHHTTSCCCCSSSSEEECCCCSSSSCSSHHHHHHHHHHH
T ss_pred -----------HH--HcCCcEEEEEecccccccchHHHHHHHHhhhhhHHhcCCCceEEEEECCCCCCchhHHHHHHHhh
Confidence 00 1135999999999987421 122211 11 2478899999999999999998876
Q ss_pred Cc
Q 018394 245 GL 246 (356)
Q Consensus 245 ~~ 246 (356)
..
T Consensus 167 ~~ 168 (537)
T 3izy_P 167 EM 168 (537)
T ss_dssp TT
T ss_pred hc
Confidence 53
No 223
>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*
Probab=99.38 E-value=2.3e-13 Score=132.97 Aligned_cols=152 Identities=19% Similarity=0.254 Sum_probs=91.7
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHcCCC-Cccccccccccccc-------------------eEEEECCEeecccCcccccc
Q 018394 19 HGRVALIGFPSVGKSTLLTLLTGTHS-EAASYEFTTLTCIP-------------------GIIHYNDTKIQLLDLPGIIE 78 (356)
Q Consensus 19 g~~v~LvG~~gaGKSTLln~L~g~~~-~vs~~p~TT~~~~~-------------------G~i~~~g~~i~~~D~pGl~~ 78 (356)
...|+++|.+|+|||||+|+|++... ....++++|..... +........+.++||||...
T Consensus 8 ~~~I~vvG~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiDtPGh~~ 87 (403)
T 3sjy_A 8 EVNIGVVGHVDHGKTTLVQAITGIWTSKKLGYAETNIGVCESCKKPEAYVTEPSCKSCGSDDEPKFLRRISFIDAPGHEV 87 (403)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHSCCCCSSSEEEEEEEEECTTSCTTTTEESSSCCGGGTCCSCCEEEEEEEEEECCCCGG
T ss_pred CcEEEEECCCCCCHHHHHHHHhCcccccccCccccceeeccccccccceecccccccccccccccccceEEEEECCCcHH
Confidence 46899999999999999999999653 23444444432100 00011125678899999422
Q ss_pred ccccCccccccccccccchhHHHHHHhcCChHHHHHHHHHHHHHccCccccccCcccccceeccceeeeecCCCCCCCHH
Q 018394 79 GASEGKGRGRQVIAVSKSSDIVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEK 158 (356)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~d~i~~v~d~~~~~~~~~~i~~~L~~~~i~l~~~~~~lS~g~~qr~~ial~~DEp~~~LD~~ 158 (356)
. .......+..+|++++++|+.......+.
T Consensus 88 ~-------~~~~~~~~~~~D~~ilVvda~~~~~~~qt------------------------------------------- 117 (403)
T 3sjy_A 88 L-------MATMLSGAALMDGAILVVAANEPFPQPQT------------------------------------------- 117 (403)
T ss_dssp G-------HHHHHHHHTTCSEEEEEEETTSCSSCHHH-------------------------------------------
T ss_pred H-------HHHHHHHHhhCCEEEEEEECCCCCCcHHH-------------------------------------------
Confidence 1 12223334567777777776643211000
Q ss_pred HHHHHHHHhcccCcEEEEccCCCHHHHHHHHhccccccceEEEeecCCCCChhhH----HHHhc--------CCCEEEec
Q 018394 159 LCYQILHEYKIHNAEVLFREDATVDDLIDVIEGNRKYMKCVYVYNKIDVIGIDDV----DKLAR--------QPNSVVIS 226 (356)
Q Consensus 159 ~~~~il~~l~~~~~~i~~thd~~~~~~~~~i~~~~~~~p~i~v~NK~Dl~~~~~~----~~l~~--------~~~~i~iS 226 (356)
.+.+.. +..+ ..+|+++|+||+|+...++. +++.+ ..+++++|
T Consensus 118 --~~~~~~-------------------~~~~----~~~~iivviNK~Dl~~~~~~~~~~~~i~~~l~~~~~~~~~ii~vS 172 (403)
T 3sjy_A 118 --REHFVA-------------------LGII----GVKNLIIVQNKVDVVSKEEALSQYRQIKQFTKGTWAENVPIIPVS 172 (403)
T ss_dssp --HHHHHH-------------------HHHH----TCCCEEEEEECGGGSCHHHHHHHHHHHHHHHTTSTTTTCCEEECB
T ss_pred --HHHHHH-------------------HHHc----CCCCEEEEEECccccchHHHHHHHHHHHHHHHhhCCCCCEEEEEE
Confidence 011100 0000 12489999999999876532 22211 23589999
Q ss_pred cccccchHHHHHHHHHHhC
Q 018394 227 CNLKLNLDRLLARMWEEMG 245 (356)
Q Consensus 227 a~~~~~l~~L~~~i~~~l~ 245 (356)
|++|.|+++|++.+.+.+.
T Consensus 173 A~~g~gi~~L~~~l~~~l~ 191 (403)
T 3sjy_A 173 ALHKINIDSLIEGIEEYIK 191 (403)
T ss_dssp TTTTBSHHHHHHHHHHHSC
T ss_pred CCCCcChHHHHHHHHHhCC
Confidence 9999999999999988664
No 224
>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}
Probab=99.38 E-value=6e-14 Score=143.47 Aligned_cols=82 Identities=21% Similarity=0.205 Sum_probs=37.5
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcCCC-C------------------------------ccccccccccccceEEEECCEee
Q 018394 20 GRVALIGFPSVGKSTLLTLLTGTHS-E------------------------------AASYEFTTLTCIPGIIHYNDTKI 68 (356)
Q Consensus 20 ~~v~LvG~~gaGKSTLln~L~g~~~-~------------------------------vs~~p~TT~~~~~G~i~~~g~~i 68 (356)
..|+|+|.+|+|||||+|.|++... . ....+|+|++.....+.+++..+
T Consensus 178 ~~I~iiG~~d~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~GiTid~~~~~~~~~~~~i 257 (592)
T 3mca_A 178 VHLVVTGHVDSGKSTMLGRIMFELGEINSRSMQKLHNEAANSGKGSFSYAWLLDTTEEERARGVTMDVASTTFESDKKIY 257 (592)
T ss_dssp EEEEEECCSSSTHHHHHHHHHHHHHCC-----------------------------------------------------
T ss_pred cEEEEEcCCCCCHHHHHHHHHHHcCCcchHHHHHHHHhHhhcCCcchhhhhhhccchhhhcCCeeEEeeEEEEEeCCeEE
Confidence 4699999999999999999964210 0 11157999999999999899999
Q ss_pred cccCccccccccccCccccccccccccchhHHHHHHhcCC
Q 018394 69 QLLDLPGIIEGASEGKGRGRQVIAVSKSSDIVLMVLDASK 108 (356)
Q Consensus 69 ~~~D~pGl~~~~~~~~~~~~~~~~~~~~~d~i~~v~d~~~ 108 (356)
.++||||.... .......+..+|++++|+|+..
T Consensus 258 ~iiDTPGh~~f-------~~~~~~~~~~aD~alLVVDa~~ 290 (592)
T 3mca_A 258 EIGDAPGHRDF-------ISGMIAGASSADFAVLVVDSSQ 290 (592)
T ss_dssp -CCEEESSSEE-------EEECCC-------CCSEEEEEE
T ss_pred EEEECCChHHH-------HHHHHHHHhhCCEEEEEEECCC
Confidence 99999997432 1223344577899999988764
No 225
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=99.37 E-value=9.7e-13 Score=114.99 Aligned_cols=57 Identities=32% Similarity=0.341 Sum_probs=43.6
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcCC-CCccccccccccccceEEEECCEee--cccCcccc
Q 018394 20 GRVALIGFPSVGKSTLLTLLTGTH-SEAASYEFTTLTCIPGIIHYNDTKI--QLLDLPGI 76 (356)
Q Consensus 20 ~~v~LvG~~gaGKSTLln~L~g~~-~~vs~~p~TT~~~~~G~i~~~g~~i--~~~D~pGl 76 (356)
..|+|+|.||||||||+|.++|.. ..+++++.|+.+.....+.++|..+ .++||+|.
T Consensus 7 ~kv~lvG~~~vGKSsL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Dt~~~ 66 (192)
T 2cjw_A 7 YRVVLIGEQGVGKSTLANIFAGVHDSMDSDXEVLGEDTYERTLMVDGESATIILLDMWEN 66 (192)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHSCCC----GGGCTTEEEEEEEETTEEEEEEEECCCCC
T ss_pred EEEEEECCCCCCHHHHHHHHhcCcCCcCccccccceeEEEEEEEECCeEEEEEEEEeccC
Confidence 479999999999999999999854 4456777788887777888898754 56799874
No 226
>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*
Probab=99.37 E-value=1.4e-13 Score=137.72 Aligned_cols=83 Identities=18% Similarity=0.215 Sum_probs=60.7
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcCCC-------------------------------CccccccccccccceEEEECCEee
Q 018394 20 GRVALIGFPSVGKSTLLTLLTGTHS-------------------------------EAASYEFTTLTCIPGIIHYNDTKI 68 (356)
Q Consensus 20 ~~v~LvG~~gaGKSTLln~L~g~~~-------------------------------~vs~~p~TT~~~~~G~i~~~g~~i 68 (356)
..|+|+|.+|+|||||+|.|++... .....+|+|++.....+...+..+
T Consensus 34 ~ki~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~~ 113 (483)
T 3p26_A 34 LSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFSTHRANF 113 (483)
T ss_dssp EEEEEESCGGGTHHHHHHHHHHHTTSSCHHHHHHHCC------------------------CCSSCCCCEEEEECSSCEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcCCccHHHHHHHHHHHHhcCCCcchhhhhhccchhHhhcCcceEeeeEEEecCCceE
Confidence 5899999999999999999976521 123346889998888888888999
Q ss_pred cccCccccccccccCccccccccccccchhHHHHHHhcCCh
Q 018394 69 QLLDLPGIIEGASEGKGRGRQVIAVSKSSDIVLMVLDASKS 109 (356)
Q Consensus 69 ~~~D~pGl~~~~~~~~~~~~~~~~~~~~~d~i~~v~d~~~~ 109 (356)
.++||||.... .......++.+|++++|+|+...
T Consensus 114 ~iiDTPG~~~f-------~~~~~~~~~~aD~~llVvDa~~g 147 (483)
T 3p26_A 114 TIVDAPGHRDF-------VPNAIMGISQADMAILCVDCSTN 147 (483)
T ss_dssp EEECCCCCGGG-------HHHHHHHHTTCSEEEEEEECCC-
T ss_pred EEEECCCcHHH-------HHHHHHhhhhCCEEEEEEECCCC
Confidence 99999997431 12333445678888888887654
No 227
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Probab=99.36 E-value=6.6e-14 Score=145.71 Aligned_cols=34 Identities=29% Similarity=0.280 Sum_probs=31.0
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHcCC-CCccccccc
Q 018394 19 HGRVALIGFPSVGKSTLLTLLTGTH-SEAASYEFT 52 (356)
Q Consensus 19 g~~v~LvG~~gaGKSTLln~L~g~~-~~vs~~p~T 52 (356)
+..|+|+|.+|||||||+|+|+|.. .++++.|+|
T Consensus 69 ~~~V~VvG~~naGKSSLlNaLlg~~~~~v~~~p~T 103 (695)
T 2j69_A 69 VFRLLVLGDMKRGKSTFLNALIGENLLPSDVNPCT 103 (695)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHTSSCSCCCCCTTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCCCCCCCCCCc
Confidence 5789999999999999999999987 578888888
No 228
>3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii}
Probab=99.36 E-value=1.3e-13 Score=138.96 Aligned_cols=83 Identities=29% Similarity=0.318 Sum_probs=62.3
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcCC----------------CCccc------cccccccccceEEEECCEeecccCccccc
Q 018394 20 GRVALIGFPSVGKSTLLTLLTGTH----------------SEAAS------YEFTTLTCIPGIIHYNDTKIQLLDLPGII 77 (356)
Q Consensus 20 ~~v~LvG~~gaGKSTLln~L~g~~----------------~~vs~------~p~TT~~~~~G~i~~~g~~i~~~D~pGl~ 77 (356)
..|+|+|.+|||||||+|+|++.. ..+++ .+|+|++.....+.+.+..+.++||||..
T Consensus 14 r~IaIiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~i~liDTPG~~ 93 (528)
T 3tr5_A 14 RTFAIISHPDAGKTTLTEKLLLFGGAIQLAGTIKSRKAARHATSDWMELEKQRGISVTTSVMQFPYKDYLINLLDTPGHA 93 (528)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHTTCHHHHHHHHTC----CCHHHHHHHHHHHCCSSSSSEEEEEETTEEEEEECCCCST
T ss_pred CEEEEECCCCCcHHHHHHHHHhhcCCcccceeeeccccccceecccchhhhcCCeeEEEeEEEEEeCCEEEEEEECCCch
Confidence 589999999999999999996211 11222 37889998889999999999999999974
Q ss_pred cccccCccccccccccccchhHHHHHHhcCCh
Q 018394 78 EGASEGKGRGRQVIAVSKSSDIVLMVLDASKS 109 (356)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~d~i~~v~d~~~~ 109 (356)
... ......++.+|.+++|+|+...
T Consensus 94 df~-------~~~~~~l~~aD~allVvDa~~g 118 (528)
T 3tr5_A 94 DFT-------EDTYRTLTAVDSALMVIDAAKG 118 (528)
T ss_dssp TCC-------HHHHHGGGGCSEEEEEEETTTC
T ss_pred hHH-------HHHHHHHHhCCEEEEEEeCCCC
Confidence 321 2233445678888888887653
No 229
>1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A*
Probab=99.33 E-value=1.4e-12 Score=127.73 Aligned_cols=151 Identities=18% Similarity=0.193 Sum_probs=94.8
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcCCCC---ccccccccccccceEEEEC-----------------C------EeecccCc
Q 018394 20 GRVALIGFPSVGKSTLLTLLTGTHSE---AASYEFTTLTCIPGIIHYN-----------------D------TKIQLLDL 73 (356)
Q Consensus 20 ~~v~LvG~~gaGKSTLln~L~g~~~~---vs~~p~TT~~~~~G~i~~~-----------------g------~~i~~~D~ 73 (356)
..|+++|.+|+|||||+++|+|.... ....+|+|++.......+. | ..+.++||
T Consensus 11 ~~I~iiG~~~~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~i~iiDt 90 (410)
T 1kk1_A 11 VNIGMVGHVDHGKTTLTKALTGVWTDTHSEELRRGITIKIGFADAEIRRCPNCGRYSTSPVCPYCGHETEFVRRVSFIDA 90 (410)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTCCCC--CGGGGSCSSSCCEEEEEEEEECTTTCCEESSSBCTTTCCBCEEEEEEEEEEC
T ss_pred cEEEEECCCCCCHHHHHHHHhCCccccChhhhcCCcEEEEeeeeeecccccccccccccccccccCcccccccEEEEEEC
Confidence 57999999999999999999987532 2234788887654444331 1 56889999
Q ss_pred cccccccccCccccccccccccchhHHHHHHhcCChHHHHHHHHHHHHHccCccccccCcccccceeccceeeeecCCCC
Q 018394 74 PGIIEGASEGKGRGRQVIAVSKSSDIVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLT 153 (356)
Q Consensus 74 pGl~~~~~~~~~~~~~~~~~~~~~d~i~~v~d~~~~~~~~~~i~~~L~~~~i~l~~~~~~lS~g~~qr~~ial~~DEp~~ 153 (356)
||.... .......+..+|++++|+|+.......+..+ .+
T Consensus 91 PGh~~f-------~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e-~l--------------------------------- 129 (410)
T 1kk1_A 91 PGHEAL-------MTTMLAGASLMDGAILVIAANEPCPRPQTRE-HL--------------------------------- 129 (410)
T ss_dssp SSHHHH-------HHHHHHCGGGCSEEEEEEETTSCSSCHHHHH-HH---------------------------------
T ss_pred CChHHH-------HHHHHhhhhhCCEEEEEEECCCCCCChhHHH-HH---------------------------------
Confidence 995321 1122233455677777777664310000000 00
Q ss_pred CCCHHHHHHHHHHhcccCcEEEEccCCCHHHHHHHHhccccccceEEEeecCCCCChhh----HHHH---hc-----CCC
Q 018394 154 HVDEKLCYQILHEYKIHNAEVLFREDATVDDLIDVIEGNRKYMKCVYVYNKIDVIGIDD----VDKL---AR-----QPN 221 (356)
Q Consensus 154 ~LD~~~~~~il~~l~~~~~~i~~thd~~~~~~~~~i~~~~~~~p~i~v~NK~Dl~~~~~----~~~l---~~-----~~~ 221 (356)
.++..+ ..+|+++|+||+|+...++ .+++ .. ..+
T Consensus 130 --------~~~~~~--------------------------~~~~iivviNK~Dl~~~~~~~~~~~~i~~~l~~~~~~~~~ 175 (410)
T 1kk1_A 130 --------MALQII--------------------------GQKNIIIAQNKIELVDKEKALENYRQIKEFIEGTVAENAP 175 (410)
T ss_dssp --------HHHHHH--------------------------TCCCEEEEEECGGGSCHHHHHHHHHHHHHHHTTSTTTTCC
T ss_pred --------HHHHHc--------------------------CCCcEEEEEECccCCCHHHHHHHHHHHHHHHHhcCcCCCe
Confidence 000000 0247899999999986542 2222 21 236
Q ss_pred EEEeccccccchHHHHHHHHHHhC
Q 018394 222 SVVISCNLKLNLDRLLARMWEEMG 245 (356)
Q Consensus 222 ~i~iSa~~~~~l~~L~~~i~~~l~ 245 (356)
++++||++|.|+++|++.|.+.+.
T Consensus 176 ~i~vSA~~g~gi~~L~~~l~~~~~ 199 (410)
T 1kk1_A 176 IIPISALHGANIDVLVKAIEDFIP 199 (410)
T ss_dssp EEECBTTTTBSHHHHHHHHHHHSC
T ss_pred EEEeeCCCCCCHHHHHHHHHHhCC
Confidence 899999999999999999988664
No 230
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=99.32 E-value=9.6e-14 Score=132.79 Aligned_cols=83 Identities=19% Similarity=0.123 Sum_probs=51.5
Q ss_pred cceEEEeecCCCCChhhHH----HHh------c------CCCEEEeccccccchHHHHHHHHHHhCceEEEeCCCCCCCC
Q 018394 196 MKCVYVYNKIDVIGIDDVD----KLA------R------QPNSVVISCNLKLNLDRLLARMWEEMGLVRVYTKPQGQQPD 259 (356)
Q Consensus 196 ~p~i~v~NK~Dl~~~~~~~----~l~------~------~~~~i~iSa~~~~~l~~L~~~i~~~l~~i~~~~~~~~~~p~ 259 (356)
.|.++|+||+|+....... .+. . .++++++||++|.|+++|.+.|.+.+.. |.. +
T Consensus 195 ~p~ivv~NK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~vi~iSA~~g~gi~~L~~~l~~~~~~---~~~--~---- 265 (341)
T 2p67_A 195 VADLIVINKDDGDNHTNVAIARHMYESALHILRRKYDEWQPRVLTCSALEKRGIDEIWHAIIDFKTA---LTA--S---- 265 (341)
T ss_dssp HCSEEEECCCCTTCHHHHHHHHHHHHHHHHHSCCSBTTBCCEEEECBGGGTBSHHHHHHHHHHHHHH---HHH--T----
T ss_pred ccCEEEEECCCCCChHHHHHHHHHHHHHHHhccccccCCCCcEEEeeCCCCCCHHHHHHHHHHHHHH---HHh--C----
Confidence 4889999999998643321 221 1 2457899999999999999999886532 111 0
Q ss_pred CCccEEeecCCCCCCHHHHHHHHHHhHhhcCc
Q 018394 260 FTEPVVLSVDRGGCTVEDFCNHIHRSLVKDVK 291 (356)
Q Consensus 260 ~~~~~~~~~~r~g~~v~~~a~~ih~~l~~~f~ 291 (356)
+ .++..|+......+.+.+...+.+.|.
T Consensus 266 ---~-~~~~~r~~~~~~~~~e~i~e~l~~~~~ 293 (341)
T 2p67_A 266 ---G-RLQQVRQQQSVEWLRKQTEEEVLNHLF 293 (341)
T ss_dssp ---T-HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ---C-hHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1 222334344445566666665555443
No 231
>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12
Probab=99.32 E-value=1.6e-12 Score=123.23 Aligned_cols=60 Identities=10% Similarity=0.067 Sum_probs=45.4
Q ss_pred cccccCcccccceecccee-------------eeecCCCCCCCHHHHHHHHH---HhcccCcEEEEccCCCHHHHH
Q 018394 127 LNKRPPQIYFKKKKTGGIS-------------FNSTLPLTHVDEKLCYQILH---EYKIHNAEVLFREDATVDDLI 186 (356)
Q Consensus 127 l~~~~~~lS~g~~qr~~ia-------------l~~DEp~~~LD~~~~~~il~---~l~~~~~~i~~thd~~~~~~~ 186 (356)
.+.++..||+||+|++.|| +++||||++||+.....+++ .+..+.+++++||+....+.+
T Consensus 213 ~~~~~~~lS~Gq~q~v~ia~~l~~~~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~vi~~tH~~~~~~~~ 288 (322)
T 1e69_A 213 RDQKLSLLSGGEKALVGLALLFALMEIKPSPFYVLDEVDSPLDDYNAERFKRLLKENSKHTQFIVITHNKIVMEAA 288 (322)
T ss_dssp CCCBGGGSCHHHHHHHHHHHHHHHTTTSCCSEEEEESCCSSCCHHHHHHHHHHHHHHTTTSEEEEECCCTTGGGGC
T ss_pred ccCchhhCCHHHHHHHHHHHHHHHhccCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEECCHHHHhhC
Confidence 3456789999999999765 77899999999987655544 443345899999997655443
No 232
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=99.31 E-value=2e-13 Score=128.42 Aligned_cols=37 Identities=22% Similarity=0.225 Sum_probs=26.8
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHcCCC------Cccccc---ccccc
Q 018394 19 HGRVALIGFPSVGKSTLLTLLTGTHS------EAASYE---FTTLT 55 (356)
Q Consensus 19 g~~v~LvG~~gaGKSTLln~L~g~~~------~vs~~p---~TT~~ 55 (356)
-..|+|+|.+|||||||+|+|+|... .++..| .||++
T Consensus 24 ~~~I~vvG~~~~GKSTlln~l~g~~~lp~~~~~~t~~p~~~~~~~~ 69 (315)
T 1jwy_B 24 LPQIVVVGSQSSGKSSVLENIVGRDFLPRGSGIVTRRPLILQLTHL 69 (315)
T ss_dssp CCEEEEEECSSSSHHHHHHHHHTSCCCCC--------CEEEEEEEC
T ss_pred CCeEEEEcCCCCCHHHHHHHHHCCCcCCCCCCceeeeeEEEEEEeC
Confidence 36899999999999999999999863 244566 45554
No 233
>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum}
Probab=99.30 E-value=4.6e-13 Score=135.46 Aligned_cols=150 Identities=17% Similarity=0.138 Sum_probs=84.9
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHcCCC------CccccccccccccceEEEEC----CEeecccCccccccccccCccccc
Q 018394 19 HGRVALIGFPSVGKSTLLTLLTGTHS------EAASYEFTTLTCIPGIIHYN----DTKIQLLDLPGIIEGASEGKGRGR 88 (356)
Q Consensus 19 g~~v~LvG~~gaGKSTLln~L~g~~~------~vs~~p~TT~~~~~G~i~~~----g~~i~~~D~pGl~~~~~~~~~~~~ 88 (356)
...|+|+|.||||||||+|.|++... .++...+|+..++.|.+.++ +..+.++|+||..... ....
T Consensus 41 ~~kV~lvG~~~vGKSSLl~~l~~~~~~~~~~~t~g~~~~~~~~~~~~~v~~~~~~~~~~~~i~Dt~G~e~~~----~~~~ 116 (535)
T 3dpu_A 41 EIKVHLIGDGMAGKTSLLKQLIGETFDPKESQTHGLNVVTKQAPNIKGLENDDELKECLFHFWDFGGQEIMH----ASHQ 116 (535)
T ss_dssp EEEEEEESSSCSSHHHHHHHHHC-----------CCCEEEEEGGGSGGGTTCSTTTTCEEEEECCCSCCTTT----TTCH
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceEEEEeccccccceeecCCCceEEEEEEECCcHHHHH----HHHH
Confidence 36899999999999999999998762 12233333333333333333 4678899999942211 1111
Q ss_pred cccccccchhHHHHHHhcCChHHHHHHHHHHHHHccCccccccCcccccceeccceeeeecCCCCCCCHHHHHHHHHHhc
Q 018394 89 QVIAVSKSSDIVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYK 168 (356)
Q Consensus 89 ~~~~~~~~~d~i~~v~d~~~~~~~~~~i~~~L~~~~i~l~~~~~~lS~g~~qr~~ial~~DEp~~~LD~~~~~~il~~l~ 168 (356)
..++.+|++++|+|++.... .. .++..+.
T Consensus 117 ---~~l~~~d~ii~V~D~s~~~~-~~-----------------------------------------------~~~~~l~ 145 (535)
T 3dpu_A 117 ---FFMTRSSVYMLLLDSRTDSN-KH-----------------------------------------------YWLRHIE 145 (535)
T ss_dssp ---HHHHSSEEEEEEECGGGGGG-HH-----------------------------------------------HHHHHHH
T ss_pred ---HHccCCcEEEEEEeCCCchh-HH-----------------------------------------------HHHHHHH
Confidence 12355777777777654311 11 1111111
Q ss_pred ccCcEEEEccCCCHHHHHHHHhccccccceEEEeecCCCCChhh-----HHHHhc--CCCEEEeccccccchHHHHHHHH
Q 018394 169 IHNAEVLFREDATVDDLIDVIEGNRKYMKCVYVYNKIDVIGIDD-----VDKLAR--QPNSVVISCNLKLNLDRLLARMW 241 (356)
Q Consensus 169 ~~~~~i~~thd~~~~~~~~~i~~~~~~~p~i~v~NK~Dl~~~~~-----~~~l~~--~~~~i~iSa~~~~~l~~L~~~i~ 241 (356)
......|+++|+||+|+..... ...... ..+++++||++|.|+++|.+.+.
T Consensus 146 ----------------------~~~~~~pvilV~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~vSA~~g~gi~eL~~~l~ 203 (535)
T 3dpu_A 146 ----------------------KYGGKSPVIVVMNKIDENPSYNIEQKKINERFPAIENRFHRISCKNGDGVESIAKSLK 203 (535)
T ss_dssp ----------------------HHSSSCCEEEEECCTTTCTTCCCCHHHHHHHCGGGTTCEEECCC-----CTTHHHHHH
T ss_pred ----------------------HhCCCCCEEEEEECCCcccccccCHHHHHHHHHhcCCceEEEecCcccCHHHHHHHHH
Confidence 0001359999999999974322 222222 13489999999999999999998
Q ss_pred HHhC
Q 018394 242 EEMG 245 (356)
Q Consensus 242 ~~l~ 245 (356)
+.+.
T Consensus 204 ~~~~ 207 (535)
T 3dpu_A 204 SAVL 207 (535)
T ss_dssp HHHT
T ss_pred HHHh
Confidence 8775
No 234
>2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei}
Probab=99.29 E-value=6.4e-13 Score=128.42 Aligned_cols=49 Identities=18% Similarity=0.123 Sum_probs=42.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCccccccccccccceEEEECCEeecccCccccc
Q 018394 21 RVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGII 77 (356)
Q Consensus 21 ~v~LvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~~D~pGl~ 77 (356)
.|+++|.+|+|||||+++|+ ..++|++.....+.+++..+.++||||..
T Consensus 23 ~i~iiG~~d~GKSTL~~~L~--------~~giTi~~~~~~~~~~~~~i~iiDtPGh~ 71 (370)
T 2elf_A 23 NVAIIGTEKSGRTSLAANLG--------KKGTSSDITMYNNDKEGRNMVFVDAHSYP 71 (370)
T ss_dssp EEEEEESTTSSHHHHHHTTS--------EEEEESSSEEEEECSSSSEEEEEECTTTT
T ss_pred EEEEECCCCCCHHHHHHHHH--------hCCEEEEeeEEEEecCCeEEEEEECCChH
Confidence 79999999999999999998 46788887777777778889999999963
No 235
>1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=99.29 E-value=3.9e-12 Score=124.46 Aligned_cols=152 Identities=18% Similarity=0.208 Sum_probs=86.6
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHcCCCC---ccccccccccccceEEEE---------------C--C------EeecccC
Q 018394 19 HGRVALIGFPSVGKSTLLTLLTGTHSE---AASYEFTTLTCIPGIIHY---------------N--D------TKIQLLD 72 (356)
Q Consensus 19 g~~v~LvG~~gaGKSTLln~L~g~~~~---vs~~p~TT~~~~~G~i~~---------------~--g------~~i~~~D 72 (356)
...|+++|.+|+|||||+++|+|.... ....+|.|++.......+ + | ..+.++|
T Consensus 8 ~~~I~iiG~~d~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~i~iiD 87 (408)
T 1s0u_A 8 EVNIGMVGHVDHGKTSLTKALTGVWTDRHSEELRRGISIRLGYADCEIRKCPQCGTYTTKPRCPNCLAETEFLRRVSFVD 87 (408)
T ss_dssp CEEEEEESCTTSSHHHHHHHHHSCCCCC-------CCCCCCEEEEEEEEECTTTCCEESSSBCTTSCCBCEEEEEEEEEE
T ss_pred ceEEEEEcCCCCCHHHHHHHHhCCccccCcccccCCcEEEecccccccccccccccccccccccccCcccccccEEEEEE
Confidence 468999999999999999999987521 222367788765433332 1 1 5688899
Q ss_pred ccccccccccCccccccccccccchhHHHHHHhcCChHHHHHHHHHHHHHccCccccccCcccccceeccceeeeecCCC
Q 018394 73 LPGIIEGASEGKGRGRQVIAVSKSSDIVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPL 152 (356)
Q Consensus 73 ~pGl~~~~~~~~~~~~~~~~~~~~~d~i~~v~d~~~~~~~~~~i~~~L~~~~i~l~~~~~~lS~g~~qr~~ial~~DEp~ 152 (356)
|||.... .......+..+|++++|+|+.......+..+ .+
T Consensus 88 tPGh~~f-------~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e-~l-------------------------------- 127 (408)
T 1s0u_A 88 SPGHETL-------MATMLSGASLMDGAILVIAANEPCPQPQTKE-HL-------------------------------- 127 (408)
T ss_dssp CSSHHHH-------HHHHHTTCSCCSEEEEEEETTSCSSCHHHHH-HH--------------------------------
T ss_pred CCCHHHH-------HHHHHHhHhhCCEEEEEEECCCCCCCchhHH-HH--------------------------------
Confidence 9995321 1122233456677777777764310000000 00
Q ss_pred CCCCHHHHHHHHHHhcccCcEEEEccCCCHHHHHHHHhccccccceEEEeecCCCCChhh----HH---HHhc-----CC
Q 018394 153 THVDEKLCYQILHEYKIHNAEVLFREDATVDDLIDVIEGNRKYMKCVYVYNKIDVIGIDD----VD---KLAR-----QP 220 (356)
Q Consensus 153 ~~LD~~~~~~il~~l~~~~~~i~~thd~~~~~~~~~i~~~~~~~p~i~v~NK~Dl~~~~~----~~---~l~~-----~~ 220 (356)
.+++. ...+|.++|+||+|+...++ .+ .+.. ..
T Consensus 128 ---------~~~~~--------------------------l~~~~iivv~NK~Dl~~~~~~~~~~~~i~~~l~~~~~~~~ 172 (408)
T 1s0u_A 128 ---------MALEI--------------------------LGIDKIIIVQNKIDLVDEKQAEENYEQIKEFVKGTIAENA 172 (408)
T ss_dssp ---------HHHHH--------------------------TTCCCEEEEEECTTSSCTTTTTTHHHHHHHHHTTSTTTTC
T ss_pred ---------HHHHH--------------------------cCCCeEEEEEEccCCCCHHHHHHHHHHHHHHHhhcCCCCC
Confidence 00000 01248899999999975421 22 2221 24
Q ss_pred CEEEeccccccchHHHHHHHHHHhC
Q 018394 221 NSVVISCNLKLNLDRLLARMWEEMG 245 (356)
Q Consensus 221 ~~i~iSa~~~~~l~~L~~~i~~~l~ 245 (356)
+++++||++|.|+++|.+.|.+.+.
T Consensus 173 ~~i~vSA~~g~gi~~L~~~l~~~i~ 197 (408)
T 1s0u_A 173 PIIPISAHHEANIDVLLKAIQDFIP 197 (408)
T ss_dssp CEEEC------CHHHHHHHHHHHSC
T ss_pred eEEEeeCCCCCCHHHHHHHHHHhCC
Confidence 5899999999999999999988664
No 236
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=99.28 E-value=3.2e-12 Score=111.69 Aligned_cols=84 Identities=20% Similarity=0.280 Sum_probs=51.6
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHcCCCCccccccccccccceEEE--EC---CEeecccCccccccccccCcccccccccc
Q 018394 19 HGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIH--YN---DTKIQLLDLPGIIEGASEGKGRGRQVIAV 93 (356)
Q Consensus 19 g~~v~LvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~--~~---g~~i~~~D~pGl~~~~~~~~~~~~~~~~~ 93 (356)
...|+|+|.+|||||||+|.+++...+. +..+.+.....+. +. ...++++||||..... .........
T Consensus 20 ~~ki~~vG~~~vGKTsLi~~l~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~----~~~~~~~~~ 92 (196)
T 3llu_A 20 KPRILLMGLRRSGKSSIQKVVFHKMSPN---ETLFLESTNKIYKDDISNSSFVNFQIWDFPGQMDFF----DPTFDYEMI 92 (196)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHSCCCGG---GGGGCCCCCSCEEEEECCTTSCCEEEEECCSSCCTT----CTTCCHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHhcCCCc---ceeeeccccceeeeeccCCCeeEEEEEECCCCHHHH----hhhhhcccc
Confidence 4689999999999999999999965431 2223333333333 32 2567889999853211 011000223
Q ss_pred ccchhHHHHHHhcCCh
Q 018394 94 SKSSDIVLMVLDASKS 109 (356)
Q Consensus 94 ~~~~d~i~~v~d~~~~ 109 (356)
++.+|++++|+|....
T Consensus 93 ~~~~~~~i~v~d~~~~ 108 (196)
T 3llu_A 93 FRGTGALIYVIDAQDD 108 (196)
T ss_dssp HHTCSEEEEEEETTSC
T ss_pred cccCCEEEEEEECCCc
Confidence 4667878888777653
No 237
>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ...
Probab=99.27 E-value=1.1e-12 Score=128.26 Aligned_cols=83 Identities=22% Similarity=0.197 Sum_probs=56.6
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHcCCC---------Cc--c------ccccccccccceEEEECCEeecccCccccccccc
Q 018394 19 HGRVALIGFPSVGKSTLLTLLTGTHS---------EA--A------SYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGAS 81 (356)
Q Consensus 19 g~~v~LvG~~gaGKSTLln~L~g~~~---------~v--s------~~p~TT~~~~~G~i~~~g~~i~~~D~pGl~~~~~ 81 (356)
...|+++|.+|+|||||+++|++... .. . ..+|+|++.....+...+..+.++||||....
T Consensus 11 ~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~~~iiDtpG~~~f-- 88 (405)
T 2c78_A 11 HVNVGTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDIDKAPEERARGITINTAHVEYETAKRHYSHVDCPGHADY-- 88 (405)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHHHHHSCTTSCCCCHHHHSCSHHHHHHTCCCSCEEEEEECSSCEEEEEECCCSGGG--
T ss_pred eEEEEEEcCCCCCHHHHHHHHHhhhhhcCccccccchhhccCCHHHHHcCCCEEeeeeEeccCCeEEEEEECCChHHH--
Confidence 36899999999999999999998310 00 0 14677887755555556788999999996431
Q ss_pred cCccccccccccccchhHHHHHHhcCC
Q 018394 82 EGKGRGRQVIAVSKSSDIVLMVLDASK 108 (356)
Q Consensus 82 ~~~~~~~~~~~~~~~~d~i~~v~d~~~ 108 (356)
.......++.+|++++++|+..
T Consensus 89 -----~~~~~~~~~~aD~~ilVvda~~ 110 (405)
T 2c78_A 89 -----IKNMITGAAQMDGAILVVSAAD 110 (405)
T ss_dssp -----HHHHHHHHTTCSSEEEEEETTT
T ss_pred -----HHHHHHHHHHCCEEEEEEECCC
Confidence 1222233456777777777654
No 238
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=99.27 E-value=5.1e-12 Score=121.90 Aligned_cols=69 Identities=10% Similarity=0.054 Sum_probs=51.1
Q ss_pred cccccCcccccceecccee---------------eeecCCCCCCCHHHHHHHHHHh---c-ccCcEEEEccCCCHHHHHH
Q 018394 127 LNKRPPQIYFKKKKTGGIS---------------FNSTLPLTHVDEKLCYQILHEY---K-IHNAEVLFREDATVDDLID 187 (356)
Q Consensus 127 l~~~~~~lS~g~~qr~~ia---------------l~~DEp~~~LD~~~~~~il~~l---~-~~~~~i~~thd~~~~~~~~ 187 (356)
+++++.+||+||+||+.|| +++||||++||+.....+++.+ . .+.+++++|||.....
T Consensus 273 ~~~~~~~LSgGe~qr~~la~al~~~~~~~~~p~~lllDEpt~~LD~~~~~~~~~~l~~l~~~g~tvi~itH~~~~~~--- 349 (365)
T 3qf7_A 273 IERPARGLSGGERALISISLAMSLAEVASGRLDAFFIDEGFSSLDTENKEKIASVLKELERLNKVIVFITHDREFSE--- 349 (365)
T ss_dssp EEEEGGGSCHHHHHHHHHHHHHHHHHHTTTTCCEEEEESCCTTSCHHHHHHHHHHHHGGGGSSSEEEEEESCHHHHT---
T ss_pred cCCCchhCCHHHHHHHHHHHHHHhhhcccCCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEecchHHHH---
Confidence 3567889999999999863 8899999999999866655544 3 2459999999975422
Q ss_pred HHhccccccceEEEeecC
Q 018394 188 VIEGNRKYMKCVYVYNKI 205 (356)
Q Consensus 188 ~i~~~~~~~p~i~v~NK~ 205 (356)
..+.++++++.
T Consensus 350 -------~~d~~~~l~~G 360 (365)
T 3qf7_A 350 -------AFDRKLRITGG 360 (365)
T ss_dssp -------TCSCEEEEETT
T ss_pred -------hCCEEEEEECC
Confidence 23566676654
No 239
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.25 E-value=1.4e-11 Score=120.64 Aligned_cols=78 Identities=5% Similarity=0.069 Sum_probs=38.7
Q ss_pred cceeeeecCCC-CCCCHHHHHHHHHHhcccCcEEEEccCCCHHHHHHHHhccccccceEEEeecCCCCChhhHHHHh---
Q 018394 142 GGISFNSTLPL-THVDEKLCYQILHEYKIHNAEVLFREDATVDDLIDVIEGNRKYMKCVYVYNKIDVIGIDDVDKLA--- 217 (356)
Q Consensus 142 ~~ial~~DEp~-~~LD~~~~~~il~~l~~~~~~i~~thd~~~~~~~~~i~~~~~~~p~i~v~NK~Dl~~~~~~~~l~--- 217 (356)
+.+.+++|||| .+||+... .+++.+. ...|+|+|+||+|+....++..+.
T Consensus 139 ~~vlL~ldePt~~~L~~~d~-~~lk~L~-------------------------~~v~iIlVinK~Dll~~~ev~~~k~~i 192 (418)
T 2qag_C 139 VQCCLYFIAPSGHGLKPLDI-EFMKRLH-------------------------EKVNIIPLIAKADTLTPEECQQFKKQI 192 (418)
T ss_dssp CCEEEEECCC-CCSCCHHHH-HHHHHHT-------------------------TTSEEEEEEESTTSSCHHHHHHHHHHH
T ss_pred eeEEEEEecCcccCCCHHHH-HHHHHHh-------------------------ccCcEEEEEEcccCccHHHHHHHHHHH
Confidence 34458899999 69998653 3444332 135899999999998765543321
Q ss_pred ------cCCCEEEeccccccchHHHHHHHHHHhC
Q 018394 218 ------RQPNSVVISCNLKLNLDRLLARMWEEMG 245 (356)
Q Consensus 218 ------~~~~~i~iSa~~~~~l~~L~~~i~~~l~ 245 (356)
....++.+||.++.+.+++...+.+.+.
T Consensus 193 ~~~~~~~~i~~~~~sa~~~~~v~~~~~~l~~~iP 226 (418)
T 2qag_C 193 MKEIQEHKIKIYEFPETDDEEENKLVKKIKDRLP 226 (418)
T ss_dssp HHHHHHHTCCCCCCC-----------------CC
T ss_pred HHHHHHcCCeEEeCCCCCCcCHHHHHHHHHhhCC
Confidence 1235678899999988877666665544
No 240
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=99.25 E-value=3.2e-12 Score=117.53 Aligned_cols=59 Identities=24% Similarity=0.372 Sum_probs=53.4
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcCCC-CccccccccccccceEEEECCEeecccCcccccc
Q 018394 20 GRVALIGFPSVGKSTLLTLLTGTHS-EAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIE 78 (356)
Q Consensus 20 ~~v~LvG~~gaGKSTLln~L~g~~~-~vs~~p~TT~~~~~G~i~~~g~~i~~~D~pGl~~ 78 (356)
..|+|+|.+|||||||+|+|+|... .++++++||.++....+.+++..+.++||||+..
T Consensus 37 ~~I~lvG~~g~GKSSLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~l~liDTpG~~~ 96 (262)
T 3def_A 37 MTVLVLGKGGVGKSSTVNSLIGEQVVRVSPFQAEGLRPVMVSRTMGGFTINIIDTPGLVE 96 (262)
T ss_dssp EEEEEEECTTSSHHHHHHHHHTSCCSCCCSSCC-CCCCEEEEEEETTEEEEEEECCCSEE
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCcceeeEEEEEEECCeeEEEEECCCCCC
Confidence 5899999999999999999999874 6889999999999999999999999999999754
No 241
>1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli}
Probab=99.24 E-value=3.2e-13 Score=135.01 Aligned_cols=83 Identities=22% Similarity=0.245 Sum_probs=61.9
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHcCCCCccccccccccccceEEEECCEeecccCccccccccccCccccccccccccchh
Q 018394 19 HGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQVIAVSKSSD 98 (356)
Q Consensus 19 g~~v~LvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~~D~pGl~~~~~~~~~~~~~~~~~~~~~d 98 (356)
...|+++|.+|+|||||+++|++.....+..+|+|.+.....+.+++..+.++||||..... ......+..+|
T Consensus 4 ~~~V~IvGhvd~GKTTLl~~L~~~~v~~~e~~GIT~~i~~~~v~~~~~~i~~iDTPGhe~f~-------~~~~~~~~~aD 76 (501)
T 1zo1_I 4 APVVTIMGHVDHGKTSLLEYIRSTKVASGEAGGITQHIGAYHVETENGMITFLDTPGHAAFT-------SMRARGAQATD 76 (501)
T ss_dssp CCCEEEEESTTSSSHHHHHHHHHHHHSBTTBCCCCCCSSCCCCCTTSSCCCEECCCTTTCCT-------TSBCSSSBSCS
T ss_pred CeEEEEECCCCCCHHHHHHHHHcCCCccccCCCeeEeEEEEEEEECCEEEEEEECCCcHHHH-------HHHHHHHhhCC
Confidence 35899999999999999999998654455668889887777777788899999999963211 11122346678
Q ss_pred HHHHHHhcCC
Q 018394 99 IVLMVLDASK 108 (356)
Q Consensus 99 ~i~~v~d~~~ 108 (356)
++++|+|+..
T Consensus 77 ~aILVVda~~ 86 (501)
T 1zo1_I 77 IVVLVVAADD 86 (501)
T ss_dssp SEEEEEETTT
T ss_pred EEEEEeeccc
Confidence 8888777654
No 242
>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A
Probab=99.24 E-value=3.9e-13 Score=129.05 Aligned_cols=48 Identities=17% Similarity=0.036 Sum_probs=34.6
Q ss_pred ccceEEEeecCCCCChhh-H-HHHhc--------CCCEEEeccccccchHHHHHHHHH
Q 018394 195 YMKCVYVYNKIDVIGIDD-V-DKLAR--------QPNSVVISCNLKLNLDRLLARMWE 242 (356)
Q Consensus 195 ~~p~i~v~NK~Dl~~~~~-~-~~l~~--------~~~~i~iSa~~~~~l~~L~~~i~~ 242 (356)
..|+++|+||+|+..... . +.+.. +..++++||+++.|+++|.+.+.+
T Consensus 197 ~~~~i~V~NK~Dl~~~~~~~~~~~~~~~~~l~~~~~~v~~~SA~~~~~i~~l~~~l~~ 254 (353)
T 2x2e_A 197 GQRTIGVITKLDLMDEGTDARDVLENKLLPLRRGYIGVVNRSQKDIDGKKDITAALAA 254 (353)
T ss_dssp CTTEEEEEECGGGSCTTCCCHHHHTTCSSCCTTCEEECCCCCHHHHHTTCCHHHHHHH
T ss_pred CCceEEEeccccccCcchhHHHHHhCCcccccCCceEEEeCCcccccccccHHHHHHH
Confidence 469999999999985432 2 22211 123567999999999999888876
No 243
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=99.21 E-value=7.6e-13 Score=127.17 Aligned_cols=50 Identities=18% Similarity=0.149 Sum_probs=38.0
Q ss_pred cceEEEeecCCCCChhhH----HHHhc------------CCCEEEeccccccchHHHHHHHHHHhC
Q 018394 196 MKCVYVYNKIDVIGIDDV----DKLAR------------QPNSVVISCNLKLNLDRLLARMWEEMG 245 (356)
Q Consensus 196 ~p~i~v~NK~Dl~~~~~~----~~l~~------------~~~~i~iSa~~~~~l~~L~~~i~~~l~ 245 (356)
.|.++|+||+|+...... ..+.. ..+++++||++|.|+++|.+.|.+.+.
T Consensus 218 ~p~ivVlNK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~vi~iSA~~g~Gi~~L~~~i~~~~~ 283 (355)
T 3p32_A 218 LADIVVVNKADGEHHKEARLAARELSAAIRLIYPREALWRPPVLTMSAVEGRGLAELWDTVERHRQ 283 (355)
T ss_dssp GCSEEEEECCCGGGHHHHHHHHHHHHHHHHHHSTTCCSCCCCEEEEBGGGTBSHHHHHHHHHHHHH
T ss_pred cCCEEEEECCCCcChhHHHHHHHHHHHHHhhccccccCCCCceEEEEcCCCCCHHHHHHHHHHHHH
Confidence 599999999998754321 12211 256999999999999999999988764
No 244
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=99.21 E-value=6.8e-12 Score=115.77 Aligned_cols=59 Identities=19% Similarity=0.295 Sum_probs=53.5
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcCC-CCccccccccccccceEEEECCEeecccCcccccc
Q 018394 20 GRVALIGFPSVGKSTLLTLLTGTH-SEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIE 78 (356)
Q Consensus 20 ~~v~LvG~~gaGKSTLln~L~g~~-~~vs~~p~TT~~~~~G~i~~~g~~i~~~D~pGl~~ 78 (356)
..|+++|.+|+|||||+|+|++.. ..++++++||.++....+..++..+.++||||+..
T Consensus 40 ~~I~vvG~~g~GKSSLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~l~iiDTpG~~~ 99 (270)
T 1h65_A 40 LTILVMGKGGVGKSSTVNSIIGERVVSISPFQSEGPRPVMVSRSRAGFTLNIIDTPGLIE 99 (270)
T ss_dssp EEEEEEESTTSSHHHHHHHHHTSCCSCCCSSSCCCSSCEEEEEEETTEEEEEEECCCSEE
T ss_pred eEEEEECCCCCCHHHHHHHHhCCCcccccCCCCcceeeEEEEEeeCCeEEEEEECCCCCC
Confidence 589999999999999999999987 46889999999998888888999999999999753
No 245
>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*
Probab=99.20 E-value=1.8e-11 Score=109.52 Aligned_cols=152 Identities=18% Similarity=0.237 Sum_probs=87.0
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcCCCCcccc-ccccccccceEEEECCE--eecccCccccccccccCccccccccccccc
Q 018394 20 GRVALIGFPSVGKSTLLTLLTGTHSEAASY-EFTTLTCIPGIIHYNDT--KIQLLDLPGIIEGASEGKGRGRQVIAVSKS 96 (356)
Q Consensus 20 ~~v~LvG~~gaGKSTLln~L~g~~~~vs~~-p~TT~~~~~G~i~~~g~--~i~~~D~pGl~~~~~~~~~~~~~~~~~~~~ 96 (356)
..|+|+|.+|||||||++.++.-..+ .+| |-...+...-.+.+++. .++++||+|.-... .+ ....++.
T Consensus 14 ~KivlvGd~~VGKTsLi~r~~~~~f~-~~~~~Tig~d~~~k~~~~~~~~v~l~iwDtaGqe~~~----~l---~~~~~~~ 85 (216)
T 4dkx_A 14 FKLVFLGEQSVGKTSLITRFMYDSFD-NTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGLERFR----SL---IPSYIRD 85 (216)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSCCC-----------CEEEEEECSSCEEEEEEECCSCTTTCG----GG---HHHHHTT
T ss_pred EEEEEECcCCcCHHHHHHHHHhCCCC-CCcCCccceEEEEEEEEecceEEEEEEEECCCchhhh----hH---HHHHhcc
Confidence 57999999999999999998865422 222 21122333334555664 45688999853211 11 1122456
Q ss_pred hhHHHHHHhcCChHHHHHHHHHHHHHccCccccccCcccccceeccceeeeecCCCCCCCHHHHHHHHHHhcccCcEEEE
Q 018394 97 SDIVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNAEVLF 176 (356)
Q Consensus 97 ~d~i~~v~d~~~~~~~~~~i~~~L~~~~i~l~~~~~~lS~g~~qr~~ial~~DEp~~~LD~~~~~~il~~l~~~~~~i~~ 176 (356)
++.++++.|...... .+.+..++ ..+.
T Consensus 86 a~~~ilv~di~~~~S-f~~i~~~~--------------------------------------------~~i~-------- 112 (216)
T 4dkx_A 86 SAAAVVVYDITNVNS-FQQTTKWI--------------------------------------------DDVR-------- 112 (216)
T ss_dssp CSEEEEEEETTCHHH-HHTHHHHH--------------------------------------------HHHH--------
T ss_pred ccEEEEEeecchhHH-HHHHHHHH--------------------------------------------HHHH--------
Confidence 676666666655322 11122111 1111
Q ss_pred ccCCCHHHHHHHHhccccccceEEEeecCCCCCh-----hhHHHHhc--CCCEEEeccccccchHHHHHHHHHHhC
Q 018394 177 REDATVDDLIDVIEGNRKYMKCVYVYNKIDVIGI-----DDVDKLAR--QPNSVVISCNLKLNLDRLLARMWEEMG 245 (356)
Q Consensus 177 thd~~~~~~~~~i~~~~~~~p~i~v~NK~Dl~~~-----~~~~~l~~--~~~~i~iSa~~~~~l~~L~~~i~~~l~ 245 (356)
.. .....|+++|.||+|+... ++...+.+ ....+.+||++|.|++++.+.|.+.+.
T Consensus 113 ----------~~---~~~~~piilVgNK~Dl~~~r~V~~~e~~~~a~~~~~~~~e~SAktg~nV~e~F~~i~~~i~ 175 (216)
T 4dkx_A 113 ----------TE---RGSDVIIMLVGNKTDLADKRQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALP 175 (216)
T ss_dssp ----------HH---HTTSSEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEEEBTTTTBSHHHHHHHHHHHC-
T ss_pred ----------Hh---cCCCCeEEEEeeccchHhcCcccHHHHhhHHHHhCCeeEEEeCCCCcCHHHHHHHHHHHHH
Confidence 00 0113589999999998643 33333332 234788999999999999998887664
No 246
>1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=99.20 E-value=5.8e-12 Score=124.20 Aligned_cols=82 Identities=22% Similarity=0.218 Sum_probs=49.8
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcCCC-----------Ccccccccc----------------------ccccceEEEECCE
Q 018394 20 GRVALIGFPSVGKSTLLTLLTGTHS-----------EAASYEFTT----------------------LTCIPGIIHYNDT 66 (356)
Q Consensus 20 ~~v~LvG~~gaGKSTLln~L~g~~~-----------~vs~~p~TT----------------------~~~~~G~i~~~g~ 66 (356)
..|+++|.+|+|||||+|+|++... ..+.+++|| ++.....+..++.
T Consensus 25 ~~i~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~i~~~s~~~gt~~~~~~~~~~~d~~~~E~~rGiTi~~~~~~~~~~~~ 104 (434)
T 1zun_B 25 LRFLTCGNVDDGKSTLIGRLLHDSKMIYEDHLEAITRDSKKSGTTGDDVDLALLVDGLQAEREQGITIDVAYRYFSTAKR 104 (434)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHTTCC------------------CCC--CHHHHHHHHC-----CCCCCEEEEEECSSE
T ss_pred eEEEEEECCCCCHHHHHHHHHhhcCCCchhhhhhhhhhhhccCccccchhhhhhhccChhHHHCCcEEEeeeeEeecCCc
Confidence 5799999999999999999986531 123345554 3333333445678
Q ss_pred eecccCccccccccccCccccccccccccchhHHHHHHhcCC
Q 018394 67 KIQLLDLPGIIEGASEGKGRGRQVIAVSKSSDIVLMVLDASK 108 (356)
Q Consensus 67 ~i~~~D~pGl~~~~~~~~~~~~~~~~~~~~~d~i~~v~d~~~ 108 (356)
.+.++||||..... ......+..+|++++|+|+..
T Consensus 105 ~~~iiDtpGh~~f~-------~~~~~~~~~aD~~ilVvDa~~ 139 (434)
T 1zun_B 105 KFIIADTPGHEQYT-------RNMATGASTCDLAIILVDARY 139 (434)
T ss_dssp EEEEEECCCSGGGH-------HHHHHHHTTCSEEEEEEETTT
T ss_pred eEEEEECCChHHHH-------HHHHHHHhhCCEEEEEEECCC
Confidence 89999999953211 122223466777777777654
No 247
>1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A*
Probab=99.17 E-value=6.2e-12 Score=124.07 Aligned_cols=83 Identities=20% Similarity=0.192 Sum_probs=53.3
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcCCCCc-------------------------cc------cccccccccceEEEECCEee
Q 018394 20 GRVALIGFPSVGKSTLLTLLTGTHSEA-------------------------AS------YEFTTLTCIPGIIHYNDTKI 68 (356)
Q Consensus 20 ~~v~LvG~~gaGKSTLln~L~g~~~~v-------------------------s~------~p~TT~~~~~G~i~~~g~~i 68 (356)
..|+++|.+|+|||||+++|++....+ .+ .+|+|++.....+...+..+
T Consensus 7 ~~I~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~giTi~~~~~~~~~~~~~~ 86 (435)
T 1jny_A 7 LNLIVIGHVDHGKSTLVGRLLMDRGFIDEKTVKEAEEAAKKLGKESEKFAFLLDRLKEERERGVTINLTFMRFETKKYFF 86 (435)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHHBCCCHHHHHHHHHHHHHHTCTHHHHHHHHHHHHHC-----------CEEECSSCEE
T ss_pred EEEEEEeCCCCCHHHHHHHHHHHcCCcCHHHHhhhhhhhhhcCCcchhhhhhhccChHHHhcCceeEeeEEEEecCCeEE
Confidence 589999999999999999998541111 11 46889988877788888899
Q ss_pred cccCccccccccccCccccccccccccchhHHHHHHhcCCh
Q 018394 69 QLLDLPGIIEGASEGKGRGRQVIAVSKSSDIVLMVLDASKS 109 (356)
Q Consensus 69 ~~~D~pGl~~~~~~~~~~~~~~~~~~~~~d~i~~v~d~~~~ 109 (356)
.++||||..... ......++.+|.+++|+|+...
T Consensus 87 ~iiDtpG~~~f~-------~~~~~~~~~aD~~ilVvDa~~g 120 (435)
T 1jny_A 87 TIIDAPGHRDFV-------KNMITGASQADAAILVVSAKKG 120 (435)
T ss_dssp EECCCSSSTTHH-------HHHHHTSSCCSEEEEEEECSTT
T ss_pred EEEECCCcHHHH-------HHHHhhhhhcCEEEEEEECCCC
Confidence 999999964321 2233345778888888888753
No 248
>1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A
Probab=99.17 E-value=4.3e-12 Score=126.02 Aligned_cols=83 Identities=17% Similarity=0.157 Sum_probs=60.6
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcCCCC-------------------------ccc------cccccccccceEEEECCEee
Q 018394 20 GRVALIGFPSVGKSTLLTLLTGTHSE-------------------------AAS------YEFTTLTCIPGIIHYNDTKI 68 (356)
Q Consensus 20 ~~v~LvG~~gaGKSTLln~L~g~~~~-------------------------vs~------~p~TT~~~~~G~i~~~g~~i 68 (356)
..|+++|.+|+|||||+|.|++.... +.+ .+|+|++.....+...+..+
T Consensus 8 ~~i~iiG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTi~~~~~~~~~~~~~~ 87 (458)
T 1f60_A 8 INVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKGSFKYAWVLDKLKAERERGITIDIALWKFETPKYQV 87 (458)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHSCSSHHHHHHHHHHGGGGSSSCCCHHHHHHHHHHHHHTTCCCSCSCEEEECSSEEE
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHcCCcChHHHHHhhhhHHhcCCcchhhhhhhccchhHHhcCcEEEEEEEEEecCCceE
Confidence 57999999999999999999864110 111 26889888887777888899
Q ss_pred cccCccccccccccCccccccccccccchhHHHHHHhcCCh
Q 018394 69 QLLDLPGIIEGASEGKGRGRQVIAVSKSSDIVLMVLDASKS 109 (356)
Q Consensus 69 ~~~D~pGl~~~~~~~~~~~~~~~~~~~~~d~i~~v~d~~~~ 109 (356)
.++||||.... .......+..+|++++|+|+...
T Consensus 88 ~iiDtPGh~~f-------~~~~~~~~~~aD~~ilVvda~~g 121 (458)
T 1f60_A 88 TVIDAPGHRDF-------IKNMITGTSQADCAILIIAGGVG 121 (458)
T ss_dssp EEEECCCCTTH-------HHHHHHSSSCCSEEEEEEECSHH
T ss_pred EEEECCCcHHH-------HHHHHhhhhhCCEEEEEEeCCcC
Confidence 99999995321 12233445778888888887643
No 249
>2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A*
Probab=99.17 E-value=1.2e-11 Score=126.10 Aligned_cols=149 Identities=19% Similarity=0.251 Sum_probs=88.5
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcC---CC------Cccc------cccccccccceEEEEC---C--EeecccCccccccc
Q 018394 20 GRVALIGFPSVGKSTLLTLLTGT---HS------EAAS------YEFTTLTCIPGIIHYN---D--TKIQLLDLPGIIEG 79 (356)
Q Consensus 20 ~~v~LvG~~gaGKSTLln~L~g~---~~------~vs~------~p~TT~~~~~G~i~~~---g--~~i~~~D~pGl~~~ 79 (356)
..++|+|.+|+|||||++.|+.. .. .+.+ ..|.|+......+.+. | ..+.++||||....
T Consensus 7 rnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGITI~~~~~~~~~~~~dg~~~~inliDTPGh~dF 86 (600)
T 2ywe_A 7 RNFCIIAHVDHGKSTLADRLLEYTGAISEREKREQLLDTLDVERERGITVKMQAVRMFYKAKDGNTYKLHLIDTPGHVDF 86 (600)
T ss_dssp EEEEEECC--CCHHHHHHHHHHHHTC-----------------------CCCCSEEEEEECTTSCEEEEEEECCCCSGGG
T ss_pred eEEEEECCCCCCHHHHHHHHHhccCCcccccccccccccchhhhcccceeeeeEEEEEEEcCCCCeEEEEEEECCCcHhH
Confidence 47999999999999999999652 11 1111 2567777777777764 2 57889999997532
Q ss_pred cccCccccccccccccchhHHHHHHhcCChHHHHHHHHHHHHHccCccccccCcccccceeccceeeeecCCCCCCCHHH
Q 018394 80 ASEGKGRGRQVIAVSKSSDIVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKL 159 (356)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~d~i~~v~d~~~~~~~~~~i~~~L~~~~i~l~~~~~~lS~g~~qr~~ial~~DEp~~~LD~~~ 159 (356)
. ......++.+|.+++|+|+....... +
T Consensus 87 ~-------~ev~r~l~~aD~aILVVDa~~gv~~q---------------------------------------------t 114 (600)
T 2ywe_A 87 S-------YEVSRALAACEGALLLIDASQGIEAQ---------------------------------------------T 114 (600)
T ss_dssp H-------HHHHHHHHTCSEEEEEEETTTBCCHH---------------------------------------------H
T ss_pred H-------HHHHHHHHhCCEEEEEEECCCCccHH---------------------------------------------H
Confidence 1 11222345566666677765432111 1
Q ss_pred HHHHHHHhcccCcEEEEccCCCHHHHHHHHhccccccceEEEeecCCCCChh--h-HHHHhcC-----CCEEEecccccc
Q 018394 160 CYQILHEYKIHNAEVLFREDATVDDLIDVIEGNRKYMKCVYVYNKIDVIGID--D-VDKLARQ-----PNSVVISCNLKL 231 (356)
Q Consensus 160 ~~~il~~l~~~~~~i~~thd~~~~~~~~~i~~~~~~~p~i~v~NK~Dl~~~~--~-~~~l~~~-----~~~i~iSa~~~~ 231 (356)
...+... . ....|.++|+||+|+.... . .+.+.+. .+++++||++|.
T Consensus 115 ~~~~~~a----------------------~---~~~ipiIvviNKiDl~~a~~~~v~~el~~~lg~~~~~vi~vSAktg~ 169 (600)
T 2ywe_A 115 VANFWKA----------------------V---EQDLVIIPVINKIDLPSADVDRVKKQIEEVLGLDPEEAILASAKEGI 169 (600)
T ss_dssp HHHHHHH----------------------H---HTTCEEEEEEECTTSTTCCHHHHHHHHHHTSCCCGGGCEECBTTTTB
T ss_pred HHHHHHH----------------------H---HCCCCEEEEEeccCccccCHHHHHHHHHHhhCCCcccEEEEEeecCC
Confidence 1010000 0 1135899999999997432 1 2333321 137999999999
Q ss_pred chHHHHHHHHHHhC
Q 018394 232 NLDRLLARMWEEMG 245 (356)
Q Consensus 232 ~l~~L~~~i~~~l~ 245 (356)
|+++|++.|.+.+.
T Consensus 170 GI~~Lle~I~~~lp 183 (600)
T 2ywe_A 170 GIEEILEAIVNRIP 183 (600)
T ss_dssp SHHHHHHHHHHHSC
T ss_pred CchHHHHHHHHhcc
Confidence 99999999988764
No 250
>1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A*
Probab=99.17 E-value=1.1e-11 Score=120.74 Aligned_cols=82 Identities=20% Similarity=0.170 Sum_probs=54.5
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcCCC--------Cc--------cccccccccccceEEEECCEeecccCccccccccccC
Q 018394 20 GRVALIGFPSVGKSTLLTLLTGTHS--------EA--------ASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEG 83 (356)
Q Consensus 20 ~~v~LvG~~gaGKSTLln~L~g~~~--------~v--------s~~p~TT~~~~~G~i~~~g~~i~~~D~pGl~~~~~~~ 83 (356)
..|+++|.+|+|||||+++|++... .. ....|+|++...-.+...+..+.++||||.....
T Consensus 4 ~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~~~iiDtpG~~~f~--- 80 (397)
T 1d2e_A 4 VNVGTIGHVDHGKTTLTAAITKILAEGGGAKFKKYEEIDNAPEERARGITINAAHVEYSTAARHYAHTDCPGHADYV--- 80 (397)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHHHHTTSBCCCCHHHHHSCCEEEETTEEEECEEEEEECSSCEEEEEECSSHHHHH---
T ss_pred EEEEEEeCCCCCHHHHHHHHhChhhhcCccccchhhhhhcCHHHHhcCcEEEeeeEEeccCCeEEEEEECCChHHHH---
Confidence 5799999999999999999997421 00 1134666665443344456789999999964311
Q ss_pred ccccccccccccchhHHHHHHhcCC
Q 018394 84 KGRGRQVIAVSKSSDIVLMVLDASK 108 (356)
Q Consensus 84 ~~~~~~~~~~~~~~d~i~~v~d~~~ 108 (356)
......++.+|++++++|+..
T Consensus 81 ----~~~~~~~~~aD~~ilVvda~~ 101 (397)
T 1d2e_A 81 ----KNMITGTAPLDGCILVVAAND 101 (397)
T ss_dssp ----HHHHHTSSCCSEEEEEEETTT
T ss_pred ----HHHHhhHhhCCEEEEEEECCC
Confidence 122233566787777777765
No 251
>3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A
Probab=99.17 E-value=1.9e-12 Score=134.69 Aligned_cols=49 Identities=14% Similarity=0.018 Sum_probs=36.0
Q ss_pred ccceEEEeecCCCCChhh-HHHHhc---------CCCEEEeccccccchHHHHHHHHHH
Q 018394 195 YMKCVYVYNKIDVIGIDD-VDKLAR---------QPNSVVISCNLKLNLDRLLARMWEE 243 (356)
Q Consensus 195 ~~p~i~v~NK~Dl~~~~~-~~~l~~---------~~~~i~iSa~~~~~l~~L~~~i~~~ 243 (356)
.+|+++|+||+|+...+. ...+.. +.+++++||++|.|+++|.+++.+.
T Consensus 217 g~pvIlVlNKiDlv~~~~~~~~il~~~~~~l~lg~~~VV~iSA~~G~GvdeL~eaI~~e 275 (772)
T 3zvr_A 217 GQRTIGVITKLDLMDEGTDARDVLENKLLPLRRGYIGVVNRSQKDIDGKKDITAALAAE 275 (772)
T ss_dssp CSSEEEEEECTTSSCTTCCSHHHHTTCSSCCSSCEEECCCCCCEESSSSEEHHHHHHHH
T ss_pred CCCEEEEEeCcccCCcchhhHHHHHHHhhhhhccCCceEEecccccccchhHHHHHHHH
Confidence 369999999999985432 122211 1246789999999999999998763
No 252
>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens}
Probab=99.16 E-value=2.7e-11 Score=110.87 Aligned_cols=50 Identities=18% Similarity=0.082 Sum_probs=37.9
Q ss_pred ccceEEEeecCCCCChhhH---HHHhc---CCCEEEeccccccchHHHHHHHHHHh
Q 018394 195 YMKCVYVYNKIDVIGIDDV---DKLAR---QPNSVVISCNLKLNLDRLLARMWEEM 244 (356)
Q Consensus 195 ~~p~i~v~NK~Dl~~~~~~---~~l~~---~~~~i~iSa~~~~~l~~L~~~i~~~l 244 (356)
..|+++|+||+|+.....+ ..+.. ...++++||+++.|++++.+.+.+.+
T Consensus 198 ~~piilV~NK~Dl~~~~~v~~~~~~~~~~~~~~~~e~SAk~g~gv~elf~~l~~~l 253 (255)
T 3c5h_A 198 KKPIVVVLTKCDEGVERYIRDAHTFALSKKNLQVVETSARSNVNVDLAFSTLVQLI 253 (255)
T ss_dssp TCCEEEEEECGGGBCHHHHHHHHHHHHTSSSCCEEECBTTTTBSHHHHHHHHHHHH
T ss_pred CCCEEEEEEcccccccHHHHHHHHHHHhcCCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 3699999999999754333 23322 23588999999999999999887654
No 253
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=99.14 E-value=4.3e-11 Score=122.78 Aligned_cols=159 Identities=18% Similarity=0.191 Sum_probs=81.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCccccccccccccceEEEECCEeecccCccccccccccCccccccccccccchhHH
Q 018394 21 RVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQVIAVSKSSDIV 100 (356)
Q Consensus 21 ~v~LvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~~D~pGl~~~~~~~~~~~~~~~~~~~~~d~i 100 (356)
.+||+|+|||||||||++|+|...|. ..|.+.++|.++.+...+.... ....+++..|.........+
T Consensus 47 ~iaIvG~nGsGKSTLL~~I~Gl~~P~----------~sG~vt~~g~~i~~~~~~~~~~-~~~~i~~v~Q~~~l~~~~tv- 114 (608)
T 3szr_A 47 AIAVIGDQSSGKSSVLEALSGVALPR----------GSGIVTRCPLVLKLKKLVNEDK-WRGKVSYQDYEIEISDASEV- 114 (608)
T ss_dssp CEECCCCTTSCHHHHHHHHHSCC-----------------CCCSCEEEEEEECSSSSC-CEEEESCC---CCCCCHHHH-
T ss_pred eEEEECCCCChHHHHHHHHhCCCCCC----------CCCeEEEcCEEEEEecCCcccc-ceeEEeeecccccCCCHHHH-
Confidence 59999999999999999999996441 4799999998876543321110 11122333332222111111
Q ss_pred HHHHhcCChHHHHHHHHHHHHHccCccccccCcccccceeccce-------eeeecCC------CCCCCHHH---HHHHH
Q 018394 101 LMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGI-------SFNSTLP------LTHVDEKL---CYQIL 164 (356)
Q Consensus 101 ~~v~d~~~~~~~~~~i~~~L~~~~i~l~~~~~~lS~g~~qr~~i-------al~~DEp------~~~LD~~~---~~~il 164 (356)
.+.+......++. ....+|. ..-.+.+ -+++||| |++||+.. +.+++
T Consensus 115 ------------~e~i~~~~~~~~~----~~~~~s~-~~i~l~i~~~~~p~LlLlDePGi~~~~t~~LD~~~~~~i~~li 177 (608)
T 3szr_A 115 ------------EKEINKAQNAIAG----EGMGISH-ELITLEISSRDVPDLTLIDLPGITRVAVGNQPADIGYKIKTLI 177 (608)
T ss_dssp ------------HTTHHHHHHHHHC----SSSCCCS-CCEEEEEEESSSCCEEEEECCC------CCSSCSHHHHHHHHH
T ss_pred ------------HHHHHHHHHHhcC----Cccccch-HHHHHHhcCCCCCceeEeeCCCccccccCCCCHHHHHHHHHHH
Confidence 1111111111111 0011111 0011111 1788999 99999865 45556
Q ss_pred HHhc-ccC--cEEEEccCCCHH-----HHHHHHhccccccceEEEeecCCCCCh
Q 018394 165 HEYK-IHN--AEVLFREDATVD-----DLIDVIEGNRKYMKCVYVYNKIDVIGI 210 (356)
Q Consensus 165 ~~l~-~~~--~~i~~thd~~~~-----~~~~~i~~~~~~~p~i~v~NK~Dl~~~ 210 (356)
..+. ... .+++++|+.+.. .+++.+. ....++|+|+||+|+...
T Consensus 178 ~~~l~~~~~iil~vvt~~~d~a~~~~l~la~~v~--~~g~rtI~VlTK~Dlv~~ 229 (608)
T 3szr_A 178 KKYIQRQETISLVVVPSNVDIATTEALSMAQEVD--PEGDRTIGILTKPDLVDK 229 (608)
T ss_dssp HHHTTSSSCCEEEEEESSSCTTTCHHHHHHHHHC--SSCCSEEEEEECGGGSSS
T ss_pred HHHHhcCCCCceEEEeccchhccHHHHHHHHHHh--hcCCceEEEecchhhcCc
Confidence 6643 222 567889997643 2333332 224689999999999854
No 254
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=99.14 E-value=5e-12 Score=121.53 Aligned_cols=25 Identities=32% Similarity=0.465 Sum_probs=22.8
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcCCC
Q 018394 20 GRVALIGFPSVGKSTLLTLLTGTHS 44 (356)
Q Consensus 20 ~~v~LvG~~gaGKSTLln~L~g~~~ 44 (356)
..|+|+|.+|||||||||+|+|...
T Consensus 35 p~I~vvG~~~sGKSSLln~l~g~~~ 59 (360)
T 3t34_A 35 PAIAVVGGQSSGKSSVLESIVGKDF 59 (360)
T ss_dssp CEEEEECBTTSSHHHHHHHHHTSCC
T ss_pred CEEEEECCCCCcHHHHHHHHhCCCc
Confidence 4899999999999999999999653
No 255
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=99.14 E-value=6.1e-12 Score=112.60 Aligned_cols=34 Identities=21% Similarity=0.157 Sum_probs=24.7
Q ss_pred CCCCeEEEecCCcEEEEEcCCCCcHHHHHHHHHcCC
Q 018394 8 AGEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTH 43 (356)
Q Consensus 8 ~~~s~~v~~~~g~~v~LvG~~gaGKSTLln~L~g~~ 43 (356)
+++||++.+ |..++|+||||||||||+++|+|..
T Consensus 14 ~~isl~i~~--G~~~~lvGpsGsGKSTLl~~L~g~~ 47 (218)
T 1z6g_A 14 LVPRGSMNN--IYPLVICGPSGVGKGTLIKKLLNEF 47 (218)
T ss_dssp --------C--CCCEEEECSTTSSHHHHHHHHHHHS
T ss_pred cCCceecCC--CCEEEEECCCCCCHHHHHHHHHhhC
Confidence 689999999 7899999999999999999999975
No 256
>3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C*
Probab=99.13 E-value=1.5e-11 Score=125.65 Aligned_cols=149 Identities=17% Similarity=0.241 Sum_probs=83.5
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcCCCC---------ccc------cccccccccceEEEECC-----EeecccCccccccc
Q 018394 20 GRVALIGFPSVGKSTLLTLLTGTHSE---------AAS------YEFTTLTCIPGIIHYND-----TKIQLLDLPGIIEG 79 (356)
Q Consensus 20 ~~v~LvG~~gaGKSTLln~L~g~~~~---------vs~------~p~TT~~~~~G~i~~~g-----~~i~~~D~pGl~~~ 79 (356)
..++|+|.+|+|||||++.|+..... +.+ ..|.|+......+.+.+ ..+.++||||....
T Consensus 5 rnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGiTi~~~~~~~~~~~~~g~~~~l~liDTPGh~dF 84 (599)
T 3cb4_D 5 RNFSIIAHIDHGKSTLSDRIIQICGGLSDREMEAQVLDSMDLERERGITIKAQSVTLDYKASDGETYQLNFIDTPGHVDF 84 (599)
T ss_dssp EEEEEECCC----CCHHHHHHHHTTC--------------------------CEEEEEEECTTSCEEEEEEEECCCCGGG
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcCCcccccccccccccchhhhcccceeeeeEEEEEEecCCCCeEEEEEEECCCchHH
Confidence 47999999999999999999753211 111 24667776666676642 67889999996432
Q ss_pred cccCccccccccccccchhHHHHHHhcCChHHHHHHHHHHHHHccCccccccCcccccceeccceeeeecCCCCCCCHHH
Q 018394 80 ASEGKGRGRQVIAVSKSSDIVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKL 159 (356)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~d~i~~v~d~~~~~~~~~~i~~~L~~~~i~l~~~~~~lS~g~~qr~~ial~~DEp~~~LD~~~ 159 (356)
. ......++.+|.+++|+|+...... .+
T Consensus 85 ~-------~ev~~~l~~aD~aILVVDa~~gv~~---------------------------------------------qt 112 (599)
T 3cb4_D 85 S-------YEVSRSLAACEGALLVVDAGQGVEA---------------------------------------------QT 112 (599)
T ss_dssp H-------HHHHHHHHHCSEEEEEEETTTCCCT---------------------------------------------HH
T ss_pred H-------HHHHHHHHHCCEEEEEEECCCCCCH---------------------------------------------HH
Confidence 1 1122233455666666666442211 11
Q ss_pred HHHHHHHhcccCcEEEEccCCCHHHHHHHHhccccccceEEEeecCCCCCh--hh-HHHHh---cC--CCEEEecccccc
Q 018394 160 CYQILHEYKIHNAEVLFREDATVDDLIDVIEGNRKYMKCVYVYNKIDVIGI--DD-VDKLA---RQ--PNSVVISCNLKL 231 (356)
Q Consensus 160 ~~~il~~l~~~~~~i~~thd~~~~~~~~~i~~~~~~~p~i~v~NK~Dl~~~--~~-~~~l~---~~--~~~i~iSa~~~~ 231 (356)
...+... . ....|.++|+||+|+... ++ .+.+. .. .+++++||++|.
T Consensus 113 ~~~~~~~----------------------~---~~~ipiIvViNKiDl~~a~~~~v~~ei~~~lg~~~~~vi~vSAktg~ 167 (599)
T 3cb4_D 113 LANCYTA----------------------M---EMDLEVVPVLNKIDLPAADPERVAEEIEDIVGIDATDAVRCSAKTGV 167 (599)
T ss_dssp HHHHHHH----------------------H---HTTCEEEEEEECTTSTTCCHHHHHHHHHHHTCCCCTTCEEECTTTCT
T ss_pred HHHHHHH----------------------H---HCCCCEEEeeeccCcccccHHHHHHHHHHHhCCCcceEEEeecccCC
Confidence 1111000 0 113599999999999752 11 23332 22 248999999999
Q ss_pred chHHHHHHHHHHhC
Q 018394 232 NLDRLLARMWEEMG 245 (356)
Q Consensus 232 ~l~~L~~~i~~~l~ 245 (356)
|+++|++.+.+.+.
T Consensus 168 GI~~Ll~~I~~~lp 181 (599)
T 3cb4_D 168 GVQDVLERLVRDIP 181 (599)
T ss_dssp THHHHHHHHHHHSC
T ss_pred CchhHHHHHhhcCC
Confidence 99999999988764
No 257
>2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus}
Probab=99.11 E-value=3.8e-11 Score=124.94 Aligned_cols=83 Identities=18% Similarity=0.249 Sum_probs=57.4
Q ss_pred cEEEEEcCCCCcHHHHHHHHH---cCCC---------Cccc------cccccccccceEEEECCEeecccCccccccccc
Q 018394 20 GRVALIGFPSVGKSTLLTLLT---GTHS---------EAAS------YEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGAS 81 (356)
Q Consensus 20 ~~v~LvG~~gaGKSTLln~L~---g~~~---------~vs~------~p~TT~~~~~G~i~~~g~~i~~~D~pGl~~~~~ 81 (356)
..|+|+|.+|||||||+|.|+ |... .+++ .+++|+....+.+.+++..+.++||||....
T Consensus 11 ~~I~IvG~~~aGKSTL~~~Ll~~~~~~~~~g~v~~~~~~~D~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~~df-- 88 (693)
T 2xex_A 11 RNIGIMAHIDAGKTTTTERILYYTGRIHKIGETHEGASQMDWMEQEQDRGITITSAATTAAWEGHRVNIIDTPGHVDF-- 88 (693)
T ss_dssp EEEEEECCGGGTHHHHHHHHHHHHSSCC-------------------------CCSEEEEEETTEEEEEECCCCCSSC--
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCceecccchhhhhcCceEeeeeEEEEECCeeEEEEECcCCcch--
Confidence 589999999999999999998 3321 1223 3688999988999999999999999997431
Q ss_pred cCccccccccccccchhHHHHHHhcCCh
Q 018394 82 EGKGRGRQVIAVSKSSDIVLMVLDASKS 109 (356)
Q Consensus 82 ~~~~~~~~~~~~~~~~d~i~~v~d~~~~ 109 (356)
.......++.+|.+++++|+...
T Consensus 89 -----~~~~~~~l~~aD~~llVvDa~~g 111 (693)
T 2xex_A 89 -----TVEVERSLRVLDGAVTVLDAQSG 111 (693)
T ss_dssp -----CHHHHHHHHHCSEEEEEEETTTB
T ss_pred -----HHHHHHHHHHCCEEEEEECCCCC
Confidence 12233345668888888888654
No 258
>2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W*
Probab=99.10 E-value=5e-11 Score=120.24 Aligned_cols=84 Identities=25% Similarity=0.305 Sum_probs=57.6
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHcCCC----------------Cccc------cccccccccceEEEECCEeecccCcccc
Q 018394 19 HGRVALIGFPSVGKSTLLTLLTGTHS----------------EAAS------YEFTTLTCIPGIIHYNDTKIQLLDLPGI 76 (356)
Q Consensus 19 g~~v~LvG~~gaGKSTLln~L~g~~~----------------~vs~------~p~TT~~~~~G~i~~~g~~i~~~D~pGl 76 (356)
...|+|+|.+|||||||++.|++... .+++ ..|+|++.....+.+++..+.++||||.
T Consensus 13 ~~~I~IiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~~~i~liDTPG~ 92 (529)
T 2h5e_A 13 RRTFAIISHPDAGKTTITEKVLLFGQAIQTAGTVKGRGSNQHAKSDWMEMEKQRGISITTSVMQFPYHDCLVNLLDTPGH 92 (529)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHSCC-------------------------------CCTTEEEEEETTEEEEEECCCCS
T ss_pred CCEEEEECCCCChHHHHHHHHHhhcCCccccceeecCccccceeeccchhcccCCcceeeeEEEEEECCeEEEEEECCCC
Confidence 35899999999999999999986421 1111 4566777777778889999999999997
Q ss_pred ccccccCccccccccccccchhHHHHHHhcCCh
Q 018394 77 IEGASEGKGRGRQVIAVSKSSDIVLMVLDASKS 109 (356)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~d~i~~v~d~~~~ 109 (356)
.... ......++.+|.+++|+|+...
T Consensus 93 ~df~-------~~~~~~l~~aD~~IlVvDa~~g 118 (529)
T 2h5e_A 93 EDFS-------EDTYRTLTAVDCCLMVIDAAKG 118 (529)
T ss_dssp TTCC-------HHHHHGGGGCSEEEEEEETTTC
T ss_pred hhHH-------HHHHHHHHHCCEEEEEEeCCcc
Confidence 4311 2233345778888888888654
No 259
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=99.10 E-value=4.2e-11 Score=103.89 Aligned_cols=53 Identities=8% Similarity=-0.098 Sum_probs=41.4
Q ss_pred cccccCcccccceeccce---------e-----eeecC--CCCCCCHHHHHHHHHHhcccC-cEEEEccC
Q 018394 127 LNKRPPQIYFKKKKTGGI---------S-----FNSTL--PLTHVDEKLCYQILHEYKIHN-AEVLFRED 179 (356)
Q Consensus 127 l~~~~~~lS~g~~qr~~i---------a-----l~~DE--p~~~LD~~~~~~il~~l~~~~-~~i~~thd 179 (356)
+++++..||+||+||+.+ + +++|| ||+++|+.....+.+.+...+ ++++++|.
T Consensus 70 ~~~~~~~lSgG~~qr~~la~aa~~~~l~~~p~llilDEigp~~~ld~~~~~~l~~~l~~~~~~~i~~~H~ 139 (178)
T 1ye8_A 70 VGSYGVNVQYFEELAIPILERAYREAKKDRRKVIIIDEIGKMELFSKKFRDLVRQIMHDPNVNVVATIPI 139 (178)
T ss_dssp ETTEEECHHHHHHHHHHHHHHHHHHHHHCTTCEEEECCCSTTGGGCHHHHHHHHHHHTCTTSEEEEECCS
T ss_pred ccccccCcCHHHHHHHHHHhhccccccccCCCEEEEeCCCCcccCCHHHHHHHHHHHhcCCCeEEEEEcc
Confidence 466778899999998643 2 78899 999999998777777776555 48888873
No 260
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=99.10 E-value=2.7e-11 Score=115.19 Aligned_cols=111 Identities=9% Similarity=-0.001 Sum_probs=75.3
Q ss_pred CCeEEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCccccccccccccceEEEECCEeecccCccccccccccCcccccc
Q 018394 10 EGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQ 89 (356)
Q Consensus 10 ~s~~v~~~~g~~v~LvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~~D~pGl~~~~~~~~~~~~~ 89 (356)
++|.+.+ |..++|+|+||||||||+++|+|...+ ..|.+.++|.+. +..+.. .+
T Consensus 164 l~~~i~~--g~~v~i~G~~GsGKTTll~~l~g~~~~-----------~~g~i~i~~~~e--~~~~~~-----------~~ 217 (330)
T 2pt7_A 164 IKDGIAI--GKNVIVCGGTGSGKTTYIKSIMEFIPK-----------EERIISIEDTEE--IVFKHH-----------KN 217 (330)
T ss_dssp HHHHHHH--TCCEEEEESTTSCHHHHHHHGGGGSCT-----------TSCEEEEESSCC--CCCSSC-----------SS
T ss_pred hhhhccC--CCEEEEECCCCCCHHHHHHHHhCCCcC-----------CCcEEEECCeec--cccccc-----------hh
Confidence 4566766 679999999999999999999999766 789999987541 111100 00
Q ss_pred ccccccchhHHHHHHhcCChHHHHHHHHHHHHHccCccccccCcccccceecccee---------eeecCCCCCCCHHHH
Q 018394 90 VIAVSKSSDIVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGIS---------FNSTLPLTHVDEKLC 160 (356)
Q Consensus 90 ~~~~~~~~d~i~~v~d~~~~~~~~~~i~~~L~~~~i~l~~~~~~lS~g~~qr~~ia---------l~~DEp~~~LD~~~~ 160 (356)
....+.. +|++|+..++ +++|||++ ..+
T Consensus 218 ~i~~~~g---------------------------------------gg~~~r~~la~aL~~~p~ilildE~~~----~e~ 254 (330)
T 2pt7_A 218 YTQLFFG---------------------------------------GNITSADCLKSCLRMRPDRIILGELRS----SEA 254 (330)
T ss_dssp EEEEECB---------------------------------------TTBCHHHHHHHHTTSCCSEEEECCCCS----THH
T ss_pred EEEEEeC---------------------------------------CChhHHHHHHHHhhhCCCEEEEcCCCh----HHH
Confidence 0000100 2444444443 78999998 235
Q ss_pred HHHHHHhcccC-cEEEEccCCCHHHHHHHH
Q 018394 161 YQILHEYKIHN-AEVLFREDATVDDLIDVI 189 (356)
Q Consensus 161 ~~il~~l~~~~-~~i~~thd~~~~~~~~~i 189 (356)
.++++.+..+. ++++++|+.+..+.++.+
T Consensus 255 ~~~l~~~~~g~~tvi~t~H~~~~~~~~dri 284 (330)
T 2pt7_A 255 YDFYNVLCSGHKGTLTTLHAGSSEEAFIRL 284 (330)
T ss_dssp HHHHHHHHTTCCCEEEEEECSSHHHHHHHH
T ss_pred HHHHHHHhcCCCEEEEEEcccHHHHHhhhh
Confidence 56777777655 789999999877777655
No 261
>1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A
Probab=99.10 E-value=1.6e-11 Score=122.21 Aligned_cols=83 Identities=23% Similarity=0.206 Sum_probs=49.6
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcCCC-------------------------Cccc------cccccccccceEEEECCEee
Q 018394 20 GRVALIGFPSVGKSTLLTLLTGTHS-------------------------EAAS------YEFTTLTCIPGIIHYNDTKI 68 (356)
Q Consensus 20 ~~v~LvG~~gaGKSTLln~L~g~~~-------------------------~vs~------~p~TT~~~~~G~i~~~g~~i 68 (356)
..|+++|.+|+|||||++.|+.... .+.+ ..|+|++.....+.+++..+
T Consensus 44 ~~i~iiG~vd~GKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~G~~~~~~~~~~D~~~~er~~giTi~~~~~~~~~~~~~~ 123 (467)
T 1r5b_A 44 VNIVFIGHVDAGKSTLGGNILFLTGMVDKRTMEKIEREAKEAGKESWYLSWALDSTSEEREKGKTVEVGRAYFETEHRRF 123 (467)
T ss_dssp EEEEEEECGGGTHHHHHHHHHHHTTSSCHHHHHHHHHHTCC----------------------------CCEEECSSEEE
T ss_pred eEEEEEECCCCCHHHHHHHHHHHhCCCChHHHHHHHhHHHhcCCcchhhhhhcccchhhhhcCceEEeeeEEEecCCeEE
Confidence 5799999999999999999964211 1111 35788888877888889999
Q ss_pred cccCccccccccccCccccccccccccchhHHHHHHhcCCh
Q 018394 69 QLLDLPGIIEGASEGKGRGRQVIAVSKSSDIVLMVLDASKS 109 (356)
Q Consensus 69 ~~~D~pGl~~~~~~~~~~~~~~~~~~~~~d~i~~v~d~~~~ 109 (356)
.++||||.... .......+..+|++++|+|+...
T Consensus 124 ~iiDtPGh~~f-------~~~~~~~~~~aD~~ilVvDa~~g 157 (467)
T 1r5b_A 124 SLLDAPGHKGY-------VTNMINGASQADIGVLVISARRG 157 (467)
T ss_dssp EECCCCC------------------TTSCSEEEEEEECSTT
T ss_pred EEEECCCcHHH-------HHHHHhhcccCCEEEEEEeCCcC
Confidence 99999996432 12223345678888888888754
No 262
>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A*
Probab=99.09 E-value=6.4e-11 Score=120.90 Aligned_cols=81 Identities=19% Similarity=0.197 Sum_probs=48.4
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcCCCCccccc-cccccccceEEEE------------------CCEeecccCcccccccc
Q 018394 20 GRVALIGFPSVGKSTLLTLLTGTHSEAASYE-FTTLTCIPGIIHY------------------NDTKIQLLDLPGIIEGA 80 (356)
Q Consensus 20 ~~v~LvG~~gaGKSTLln~L~g~~~~vs~~p-~TT~~~~~G~i~~------------------~g~~i~~~D~pGl~~~~ 80 (356)
..|+|+|.+|+|||||+++|++.... ...| ++|.+...-.+.+ ....+.++||||.....
T Consensus 6 ~~V~IvGh~d~GKTTLl~~L~~~~v~-~~e~ggiT~~ig~~~~~~~~~~~~~~~~~~~~~v~~~~~~i~liDTPGhe~F~ 84 (594)
T 1g7s_A 6 PIVSVLGHVDHGKTTLLDHIRGSAVA-SREAGGITQHIGATEIPMDVIEGICGDFLKKFSIRETLPGLFFIDTPGHEAFT 84 (594)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHHS-CC----CCCBTTEEEEEHHHHHHHSCGGGGGCGGGGTCCEEEEECCCTTSCCT
T ss_pred cEEEEECCCCCcHHHHHHHHhcccCc-cccCCceecccCeEEEeechhhhhccccccccccccccCCEEEEECCCcHHHH
Confidence 68999999999999999999975321 1223 4444321111111 11247899999964321
Q ss_pred ccCccccccccccccchhHHHHHHhcCC
Q 018394 81 SEGKGRGRQVIAVSKSSDIVLMVLDASK 108 (356)
Q Consensus 81 ~~~~~~~~~~~~~~~~~d~i~~v~d~~~ 108 (356)
. .....++.+|.+++|+|+..
T Consensus 85 ~-------~~~r~~~~aD~aILVvDa~~ 105 (594)
T 1g7s_A 85 T-------LRKRGGALADLAILIVDINE 105 (594)
T ss_dssp T-------SBCSSSBSCSEEEEEEETTT
T ss_pred H-------HHHHHHhhCCEEEEEEECCC
Confidence 1 11123466888888888765
No 263
>1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ...
Probab=99.07 E-value=1.1e-10 Score=121.47 Aligned_cols=84 Identities=19% Similarity=0.263 Sum_probs=54.8
Q ss_pred CcEEEEEcCCCCcHHHHHHHHH---cCCCC---------ccc------cccccccccceEEEECCEeecccCcccccccc
Q 018394 19 HGRVALIGFPSVGKSTLLTLLT---GTHSE---------AAS------YEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGA 80 (356)
Q Consensus 19 g~~v~LvG~~gaGKSTLln~L~---g~~~~---------vs~------~p~TT~~~~~G~i~~~g~~i~~~D~pGl~~~~ 80 (356)
-..|+|+|.+|||||||++.|+ |.... +.+ ..++|+......+.+++..+.++||||....
T Consensus 12 ~~~I~IvG~~~aGKTTL~~~Ll~~~g~~~~~g~v~~~~~~~d~~~~E~~~giTi~~~~~~~~~~~~~i~liDTPG~~df- 90 (691)
T 1dar_A 12 LRNIGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITAAVTTCFWKDHRINIIDTPGHVDF- 90 (691)
T ss_dssp EEEEEEEECTTSCHHHHHHHHHHHHCC----------------------------CCEEEEEETTEEEEEECCCSSTTC-
T ss_pred ccEEEEECCCCCCHHHHHHHHHHhcCCCcccceecCCceeccCchhhhhcccccccceEEEEECCeEEEEEECcCccch-
Confidence 3589999999999999999998 32211 122 4578888888888999999999999997431
Q ss_pred ccCccccccccccccchhHHHHHHhcCCh
Q 018394 81 SEGKGRGRQVIAVSKSSDIVLMVLDASKS 109 (356)
Q Consensus 81 ~~~~~~~~~~~~~~~~~d~i~~v~d~~~~ 109 (356)
.......++.+|.+++++|+...
T Consensus 91 ------~~~~~~~l~~aD~~ilVvDa~~g 113 (691)
T 1dar_A 91 ------TIEVERSMRVLDGAIVVFDSSQG 113 (691)
T ss_dssp ------HHHHHHHHHHCSEEEEEEETTTC
T ss_pred ------HHHHHHHHHHCCEEEEEEECCCC
Confidence 12223345667888888887653
No 264
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=99.06 E-value=1.4e-11 Score=109.15 Aligned_cols=31 Identities=29% Similarity=0.242 Sum_probs=25.3
Q ss_pred eEEEecCCcEEEEEcCCCCcHHHHHHHHHcCCC
Q 018394 12 FEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHS 44 (356)
Q Consensus 12 ~~v~~~~g~~v~LvG~~gaGKSTLln~L~g~~~ 44 (356)
.++.+ |++++|+||||||||||+++|+|...
T Consensus 15 ~~i~~--Gei~~l~GpnGsGKSTLl~~l~gl~~ 45 (207)
T 1znw_A 15 QPAAV--GRVVVLSGPSAVGKSTVVRCLRERIP 45 (207)
T ss_dssp ----C--CCEEEEECSTTSSHHHHHHHHHHHST
T ss_pred CCCCC--CCEEEEECCCCCCHHHHHHHHHhhCC
Confidence 57778 88999999999999999999999864
No 265
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=99.06 E-value=2.8e-11 Score=104.87 Aligned_cols=78 Identities=19% Similarity=0.340 Sum_probs=46.2
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHcCCCCc---cccccccccccceEEEECCEeecccCccccccccccCcccccccc-ccc
Q 018394 19 HGRVALIGFPSVGKSTLLTLLTGTHSEA---ASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQVI-AVS 94 (356)
Q Consensus 19 g~~v~LvG~~gaGKSTLln~L~g~~~~v---s~~p~TT~~~~~G~i~~~g~~i~~~D~pGl~~~~~~~~~~~~~~~-~~~ 94 (356)
...|+|+|++|||||||+|.|++..... +..|.+|.+. .+..+.++||||...... .....+ ..+
T Consensus 48 ~~~i~vvG~~g~GKSsll~~l~~~~~~~~~~~~~~~~~~~~-------~~~~~~l~Dt~G~~~~~~----~~~~~~~~~~ 116 (193)
T 2ged_A 48 QPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSAADY-------DGSGVTLVDFPGHVKLRY----KLSDYLKTRA 116 (193)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHSSCC------------CC-------CCTTCSEEEETTCCBSSC----CHHHHHHHHG
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCCCCcccccCCCceeeee-------cCCeEEEEECCCCchHHH----HHHHHHHhhc
Confidence 4689999999999999999999876321 3334444432 566788899999743211 011111 112
Q ss_pred cchhHHHHHHhcC
Q 018394 95 KSSDIVLMVLDAS 107 (356)
Q Consensus 95 ~~~d~i~~v~d~~ 107 (356)
..+|.+++|+|..
T Consensus 117 ~~~~~~i~v~d~~ 129 (193)
T 2ged_A 117 KFVKGLIFMVDST 129 (193)
T ss_dssp GGEEEEEEEEETT
T ss_pred ccCCEEEEEEECC
Confidence 3367777777766
No 266
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=99.05 E-value=7e-11 Score=122.42 Aligned_cols=64 Identities=25% Similarity=0.249 Sum_probs=46.5
Q ss_pred eEEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCC------------ccc------cccccccccceEEEECCEeecccCc
Q 018394 12 FEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSE------------AAS------YEFTTLTCIPGIIHYNDTKIQLLDL 73 (356)
Q Consensus 12 ~~v~~~~g~~v~LvG~~gaGKSTLln~L~g~~~~------------vs~------~p~TT~~~~~G~i~~~g~~i~~~D~ 73 (356)
+.+.+ +..++|+|++|||||||+++|++...+ +.+ ..+.|..+....+.+.+..+.++||
T Consensus 4 ~~~~~--~~~i~IiG~~gaGKTTLl~~L~~~~~~~~~~G~V~~g~~~~d~~~~e~~~giti~~~~~~~~~~~~~~nliDT 81 (665)
T 2dy1_A 4 EGGAM--IRTVALVGHAGSGKTTLTEALLYKTGAKERRGRVEEGTTTTDYTPEAKLHRTTVRTGVAPLLFRGHRVFLLDA 81 (665)
T ss_dssp --CCC--EEEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCGGGTCCSSCCSHHHHHTTSCCSCEEEEEEETTEEEEEEEC
T ss_pred CccCC--CcEEEEECCCCChHHHHHHHHHHhcCCCCccceecCCcccccCCHHHHhcCCeEEecceEEeeCCEEEEEEeC
Confidence 44455 679999999999999999999954322 111 1356666666777778888999999
Q ss_pred cccc
Q 018394 74 PGII 77 (356)
Q Consensus 74 pGl~ 77 (356)
||..
T Consensus 82 pG~~ 85 (665)
T 2dy1_A 82 PGYG 85 (665)
T ss_dssp CCSG
T ss_pred CCcc
Confidence 9853
No 267
>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}
Probab=99.03 E-value=2.8e-11 Score=122.67 Aligned_cols=36 Identities=19% Similarity=0.182 Sum_probs=32.1
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHcCCC---Cccccccccc
Q 018394 19 HGRVALIGFPSVGKSTLLTLLTGTHS---EAASYEFTTL 54 (356)
Q Consensus 19 g~~v~LvG~~gaGKSTLln~L~g~~~---~vs~~p~TT~ 54 (356)
-..|+|+|.+|||||||+|+|+|... ++++.|.||+
T Consensus 65 ~~~V~vvG~~n~GKSTLIN~Llg~~~~~~~vs~~p~T~~ 103 (550)
T 2qpt_A 65 KPMVLVAGQYSTGKTSFIQYLLEQEVPGSRVGPEPTTDC 103 (550)
T ss_dssp CCEEEEEEBTTSCHHHHHHHHHTSCCSSCCCCSSCCCCS
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCccccCccCCCCccce
Confidence 46999999999999999999999874 5888999876
No 268
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=99.01 E-value=9.3e-11 Score=110.65 Aligned_cols=109 Identities=11% Similarity=-0.067 Sum_probs=62.4
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHcCCCCccccccccccccceEEEECCEeecccCccccccccccCccccccccccccchh
Q 018394 19 HGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQVIAVSKSSD 98 (356)
Q Consensus 19 g~~v~LvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~~D~pGl~~~~~~~~~~~~~~~~~~~~~d 98 (356)
|.++||+|+||||||||+++|+|...+. +|. ...+.+.-++. +.+. -. .+
T Consensus 90 g~ivgI~G~sGsGKSTL~~~L~gll~~~---~G~---~~v~~v~qd~~---~~~~-t~--------------------~e 139 (312)
T 3aez_A 90 PFIIGVAGSVAVGKSTTARVLQALLARW---DHH---PRVDLVTTDGF---LYPN-AE--------------------LQ 139 (312)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHHHTS---TTC---CCEEEEEGGGG---BCCH-HH--------------------HH
T ss_pred CEEEEEECCCCchHHHHHHHHHhhcccc---CCC---CeEEEEecCcc---CCcc-cH--------------------HH
Confidence 7899999999999999999999987541 111 00111111100 0000 00 00
Q ss_pred HHHHHH-hcCChHHHHHHHHHHHHHccC-ccccccCcccccceecccee---------eeecCCCCCCCH
Q 018394 99 IVLMVL-DASKSEGHRQILTKELEAVGL-RLNKRPPQIYFKKKKTGGIS---------FNSTLPLTHVDE 157 (356)
Q Consensus 99 ~i~~v~-d~~~~~~~~~~i~~~L~~~~i-~l~~~~~~lS~g~~qr~~ia---------l~~DEp~~~LD~ 157 (356)
.+.+.. .......+.+.+.+.|+.++- ..+..++.+|+|++||++++ +++|||+..+|.
T Consensus 140 ~~~~~~~~g~~~~~d~~~~~~~L~~l~~~~~~~~~~~lS~G~~qRv~~a~al~~~p~ilIlDep~~~~d~ 209 (312)
T 3aez_A 140 RRNLMHRKGFPESYNRRALMRFVTSVKSGSDYACAPVYSHLHYDIIPGAEQVVRHPDILILEGLNVLQTG 209 (312)
T ss_dssp HTTCTTCTTSGGGBCHHHHHHHHHHHHTTCSCEEEEEEETTTTEEEEEEEEEECSCSEEEEECTTTTCCC
T ss_pred HHHHHHhcCCChHHHHHHHHHHHHHhCCCcccCCcccCChhhhhhhhhHHHhccCCCEEEECCccccCCc
Confidence 000000 000011123445566666553 34567889999999999886 889999987763
No 269
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=98.99 E-value=7e-11 Score=104.85 Aligned_cols=50 Identities=6% Similarity=0.121 Sum_probs=37.1
Q ss_pred cceEEEeecCCCCCh-----hhHH-HHhc---CCCEEEeccccccchHHHHHHHHHHhC
Q 018394 196 MKCVYVYNKIDVIGI-----DDVD-KLAR---QPNSVVISCNLKLNLDRLLARMWEEMG 245 (356)
Q Consensus 196 ~p~i~v~NK~Dl~~~-----~~~~-~l~~---~~~~i~iSa~~~~~l~~L~~~i~~~l~ 245 (356)
.|.++|+||+|+... +++. .+.. ..+++++||++|.|+++|.+.+.+.+.
T Consensus 155 ~~~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~g~gi~~l~~~l~~~~~ 213 (221)
T 2wsm_A 155 VADLIVINKVALAEAVGADVEKMKADAKLINPRAKIIEMDLKTGKGFEEWIDFLRGILN 213 (221)
T ss_dssp TCSEEEEECGGGHHHHTCCHHHHHHHHHHHCTTSEEEECBTTTTBTHHHHHHHHHHHHC
T ss_pred cCCEEEEecccCCcchhhHHHHHHHHHHHhCCCCeEEEeecCCCCCHHHHHHHHHHHHH
Confidence 589999999998632 1221 1211 235889999999999999999988764
No 270
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=98.99 E-value=5.5e-10 Score=102.72 Aligned_cols=120 Identities=17% Similarity=0.032 Sum_probs=74.0
Q ss_pred EEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCcccccccccccc-ceEEEECCEeecccCccccccccccCccccccccc
Q 018394 14 VTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCI-PGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQVIA 92 (356)
Q Consensus 14 v~~~~g~~v~LvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~-~G~i~~~g~~i~~~D~pGl~~~~~~~~~~~~~~~~ 92 (356)
+.+ |..++|+||||||||||+++|+|...+ . .|.|.++|.++..+. .. ......|...
T Consensus 22 i~~--g~~v~i~Gp~GsGKSTll~~l~g~~~~-----------~~~G~I~~~g~~i~~~~-~~-------~~~~v~q~~~ 80 (261)
T 2eyu_A 22 HRK--MGLILVTGPTGSGKSTTIASMIDYINQ-----------TKSYHIITIEDPIEYVF-KH-------KKSIVNQREV 80 (261)
T ss_dssp GCS--SEEEEEECSTTCSHHHHHHHHHHHHHH-----------HCCCEEEEEESSCCSCC-CC-------SSSEEEEEEB
T ss_pred hCC--CCEEEEECCCCccHHHHHHHHHHhCCC-----------CCCCEEEEcCCcceeec-CC-------cceeeeHHHh
Confidence 455 689999999999999999999998644 5 799988887664331 00 0111111000
Q ss_pred cccchhHHHHHHhcCChHHHHHHHHHHHHHccCccccccCcccccceeccceeeeecCCCCCCCHHHHHHHHHHhcccCc
Q 018394 93 VSKSSDIVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNA 172 (356)
Q Consensus 93 ~~~~~d~i~~v~d~~~~~~~~~~i~~~L~~~~i~l~~~~~~lS~g~~qr~~ial~~DEp~~~LD~~~~~~il~~l~~~~~ 172 (356)
.+....+ ...+...|.. .| =.+++|||+ |++.+..+++....+.+
T Consensus 81 gl~~~~l-------------~~~la~aL~~-------~p------------~illlDEp~---D~~~~~~~l~~~~~g~~ 125 (261)
T 2eyu_A 81 GEDTKSF-------------ADALRAALRE-------DP------------DVIFVGEMR---DLETVETALRAAETGHL 125 (261)
T ss_dssp TTTBSCH-------------HHHHHHHHHH-------CC------------SEEEESCCC---SHHHHHHHHHHHHTTCE
T ss_pred CCCHHHH-------------HHHHHHHHhh-------CC------------CEEEeCCCC---CHHHHHHHHHHHccCCE
Confidence 0000000 0111111110 00 027889999 88888887777656678
Q ss_pred EEEEccCCCHHHHHHHH
Q 018394 173 EVLFREDATVDDLIDVI 189 (356)
Q Consensus 173 ~i~~thd~~~~~~~~~i 189 (356)
+++++|+.+..+.++.+
T Consensus 126 vl~t~H~~~~~~~~dri 142 (261)
T 2eyu_A 126 VFGTLHTNTAIDTIHRI 142 (261)
T ss_dssp EEEEECCSSHHHHHHHH
T ss_pred EEEEeCcchHHHHHHHH
Confidence 99999998877776655
No 271
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=98.99 E-value=4.8e-12 Score=118.98 Aligned_cols=47 Identities=15% Similarity=0.106 Sum_probs=40.0
Q ss_pred CCCeEEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCccccccccccccceEEEECCEee
Q 018394 9 GEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKI 68 (356)
Q Consensus 9 ~~s~~v~~~~g~~v~LvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i 68 (356)
.++|++.+ |.+++|+|+||||||||++.|+|...+ ..|.+.+.|.++
T Consensus 92 ~l~~~~~~--g~vi~lvG~nGsGKTTll~~Lag~l~~-----------~~g~V~l~g~d~ 138 (302)
T 3b9q_A 92 ELQLGFRK--PAVIMIVGVNGGGKTTSLGKLAHRLKN-----------EGTKVLMAAGDT 138 (302)
T ss_dssp SCCCCSSS--CEEEEEECCTTSCHHHHHHHHHHHHHH-----------TTCCEEEECCCC
T ss_pred ccccccCC--CcEEEEEcCCCCCHHHHHHHHHHHHHH-----------cCCeEEEEeecc
Confidence 56777766 789999999999999999999998755 678998888654
No 272
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=98.98 E-value=4.7e-11 Score=114.95 Aligned_cols=58 Identities=22% Similarity=0.210 Sum_probs=30.3
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcCCCCcccc-c------ccccc--ccceEEEECCE--eecccCccccc
Q 018394 20 GRVALIGFPSVGKSTLLTLLTGTHSEAASY-E------FTTLT--CIPGIIHYNDT--KIQLLDLPGII 77 (356)
Q Consensus 20 ~~v~LvG~~gaGKSTLln~L~g~~~~vs~~-p------~TT~~--~~~G~i~~~g~--~i~~~D~pGl~ 77 (356)
..|+|+|++|||||||+|+|.+.......+ | ..|+. .....+..+|. .+.++||||+.
T Consensus 38 ~~I~vvG~~g~GKSTLln~L~~~~~~~~~~~~~~~~~~~~ti~~~~~~~~~~~~~~~~~l~i~DTpG~g 106 (361)
T 2qag_A 38 FTLMVVGESGLGKSTLINSLFLTDLYPERVIPGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYG 106 (361)
T ss_dssp ECEEECCCTTSCHHHHHHHHTTCCC---------------CEEEEEEEEC----CEEEEEEEEC-----
T ss_pred EEEEEEcCCCCCHHHHHHHHhCCCCCCCCcccCCCcccCCceeEEEEEEEeecCCcccceEEEEecccc
Confidence 358999999999999999998876443332 1 12332 22222334554 57889999973
No 273
>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B
Probab=98.97 E-value=2.2e-10 Score=123.06 Aligned_cols=82 Identities=20% Similarity=0.185 Sum_probs=51.4
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcCCC----------------CccccccccccccceEEEECCEeecccCccccccccccC
Q 018394 20 GRVALIGFPSVGKSTLLTLLTGTHS----------------EAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEG 83 (356)
Q Consensus 20 ~~v~LvG~~gaGKSTLln~L~g~~~----------------~vs~~p~TT~~~~~G~i~~~g~~i~~~D~pGl~~~~~~~ 83 (356)
..|+++|.+|+|||||+++|++... +.....|+|++...-.+...+..+.++||||.....
T Consensus 297 lnIvIIGhvDvGKSTLInrLt~~~~~~G~a~f~~~a~lD~~~~ErerGITIdva~v~f~~~~~kI~IIDTPGHedF~--- 373 (1289)
T 3avx_A 297 VNVGTIGHVDHGKTTLTAAITTVLAKTYGGAARAFDQIDNAPEEKARGITINTSHVEYDTPTRHYAHVDCPGHADYV--- 373 (1289)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHHHHHSCC---------------------CCSCEEEECSSCEEEEEECCCHHHHH---
T ss_pred eEEEEEcCCCCCHHHHHHHHHhhhccccccccccccccccccccccCceeEEEEEEEEcCCCEEEEEEECCChHHHH---
Confidence 5799999999999999999997410 111245777776554455567889999999964321
Q ss_pred ccccccccccccchhHHHHHHhcCC
Q 018394 84 KGRGRQVIAVSKSSDIVLMVLDASK 108 (356)
Q Consensus 84 ~~~~~~~~~~~~~~d~i~~v~d~~~ 108 (356)
......++.+|++++|+|+..
T Consensus 374 ----~~mi~gas~AD~aILVVDAtd 394 (1289)
T 3avx_A 374 ----KNMITGAAQMDGAILVVAATD 394 (1289)
T ss_dssp ----HHHHHTSCCCSEEEEEEETTT
T ss_pred ----HHHHHHHhhCCEEEEEEcCCc
Confidence 122234566777777777654
No 274
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Probab=98.95 E-value=4.2e-09 Score=100.34 Aligned_cols=55 Identities=15% Similarity=0.152 Sum_probs=41.3
Q ss_pred ccccCcccccceeccc------ee---------eeecCCCCCCCHHHHHHHHH---Hhc-ccCcEEEEccCCCH
Q 018394 128 NKRPPQIYFKKKKTGG------IS---------FNSTLPLTHVDEKLCYQILH---EYK-IHNAEVLFREDATV 182 (356)
Q Consensus 128 ~~~~~~lS~g~~qr~~------ia---------l~~DEp~~~LD~~~~~~il~---~l~-~~~~~i~~thd~~~ 182 (356)
++++..||+|++|+++ ++ +++||||++||+.....++. .+. .+.+++++|||..+
T Consensus 243 ~~~~~~lS~G~~~~~~la~~l~~a~~l~~~p~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~~vi~~sH~~~~ 316 (339)
T 3qkt_A 243 ERPLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVSHDEEL 316 (339)
T ss_dssp EECGGGSCHHHHHHHHHHHHHHHHHHTTTTTCEEEEECCCTTCCHHHHHHHHHHHHHTGGGSSEEEEEESCGGG
T ss_pred cCChHHCCHHHHHHHHHHHHHHHHHHhcCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEEChHHH
Confidence 4567899999999653 32 88999999999988655544 433 34489999999543
No 275
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=98.94 E-value=4.2e-10 Score=104.63 Aligned_cols=58 Identities=31% Similarity=0.440 Sum_probs=38.0
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHcCC-CCccccccccccccceEEEECCEeecccCccccccc
Q 018394 19 HGRVALIGFPSVGKSTLLTLLTGTH-SEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEG 79 (356)
Q Consensus 19 g~~v~LvG~~gaGKSTLln~L~g~~-~~vs~~p~TT~~~~~G~i~~~g~~i~~~D~pGl~~~ 79 (356)
...++++|.||||||||+|+|+|.. ..+++.||||+++. .+.+ +..+.++||||+...
T Consensus 120 ~~~v~~vG~~nvGKSsliN~l~~~~~~~~~~~~g~T~~~~--~~~~-~~~~~l~DtpG~~~~ 178 (282)
T 1puj_A 120 AIRALIIGIPNVGKSTLINRLAKKNIAKTGDRPGITTSQQ--WVKV-GKELELLDTPGILWP 178 (282)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHTSCCC------------C--CEEE-TTTEEEEECCCCCCS
T ss_pred CceEEEEecCCCchHHHHHHHhcCceeecCCCCCeeeeeE--EEEe-CCCEEEEECcCcCCC
Confidence 4689999999999999999999988 67999999999986 3444 457889999999753
No 276
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=98.90 E-value=9.2e-11 Score=115.63 Aligned_cols=149 Identities=10% Similarity=0.081 Sum_probs=87.3
Q ss_pred CCCeEEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCccccccccccccceEEEECCE---eecccC-c-cccccccccC
Q 018394 9 GEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDT---KIQLLD-L-PGIIEGASEG 83 (356)
Q Consensus 9 ~~s~~v~~~~g~~v~LvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~---~i~~~D-~-pGl~~~~~~~ 83 (356)
++ |.+.+ |.+++|+|+||||||||+++|+|...+ ..|.+.+.|. ++.-+. . .+. ......
T Consensus 150 ~v-l~i~~--Gq~~~IvG~sGsGKSTLl~~Iag~~~~-----------~~G~i~~~G~r~~ev~~~~~~~~~~-~~l~r~ 214 (438)
T 2dpy_A 150 AL-LTVGR--GQRMGLFAGSGVGKSVLLGMMARYTRA-----------DVIVVGLIGERGREVKDFIENILGP-DGRARS 214 (438)
T ss_dssp HH-SCCBT--TCEEEEEECTTSSHHHHHHHHHHHSCC-----------SEEEEEEESCCHHHHHHHHHTTTHH-HHHHTE
T ss_pred ee-EEecC--CCEEEEECCCCCCHHHHHHHHhcccCC-----------CeEEEEEeceecHHHHHHHHhhccc-cccCce
Confidence 46 77777 789999999999999999999999765 7899999887 332110 0 000 000111
Q ss_pred ccccccc-cccc---cchhHHHHHHhcCChHHHHHHHHHHHHHc--cC-ccccccCcccccceeccceeeeecCC--CCC
Q 018394 84 KGRGRQV-IAVS---KSSDIVLMVLDASKSEGHRQILTKELEAV--GL-RLNKRPPQIYFKKKKTGGISFNSTLP--LTH 154 (356)
Q Consensus 84 ~~~~~~~-~~~~---~~~d~i~~v~d~~~~~~~~~~i~~~L~~~--~i-~l~~~~~~lS~g~~qr~~ial~~DEp--~~~ 154 (356)
++...|. ...+ ..++.+.+. .+.+... .+ .+-.....+|+|+ ||++++ +.+| |++
T Consensus 215 i~~v~q~~~~~~~~~~v~~~~~~~-------------ae~~~~~~~~v~~~ld~l~~lS~g~-qrvslA--l~~p~~t~g 278 (438)
T 2dpy_A 215 VVIAAPADVSPLLRMQGAAYATRI-------------AEDFRDRGQHVLLIMDSLTRYAMAQ-REIALA--IGEPPATKG 278 (438)
T ss_dssp EEEEECTTSCHHHHHHHHHHHHHH-------------HHHHHTTTCEEEEEEECHHHHHHHH-HHHHHH--TTCCCCSSS
T ss_pred EEEEECCCCCHHHHHHHHHHHHHH-------------HHHHHhCCCCHHHHHHhHHHHHHHH-HHHHHH--hCCCccccc
Confidence 1222221 0000 001111111 0111111 11 1222367789999 999988 6666 889
Q ss_pred CCHHHHHHHHHHh---cc---c-C------cEEEEccCCCHHHHHHHH
Q 018394 155 VDEKLCYQILHEY---KI---H-N------AEVLFREDATVDDLIDVI 189 (356)
Q Consensus 155 LD~~~~~~il~~l---~~---~-~------~~i~~thd~~~~~~~~~i 189 (356)
||+.....+.+.+ .. . + ++++++||++ +.++|.+
T Consensus 279 lD~~~~~~l~~ll~r~~~~~~~~GsiT~~~tVlv~tHdl~-~~iad~v 325 (438)
T 2dpy_A 279 YPPSVFAKLPALVERAGNGIHGGGSITAFYTVLTEGDDQQ-DPIADSA 325 (438)
T ss_dssp CCTTHHHHHHHHHTTCSCCSTTSCEEEEEEEEECSSSCSC-CHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHhccCCCCcccceeEEEEeCCCcc-chhhceE
Confidence 9998765555544 33 1 3 7889999998 6666655
No 277
>2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H
Probab=98.90 E-value=1.4e-09 Score=113.34 Aligned_cols=84 Identities=17% Similarity=0.172 Sum_probs=59.4
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHc---CCCC---------ccc------cccccccccceEEEECC-------EeecccCc
Q 018394 19 HGRVALIGFPSVGKSTLLTLLTG---THSE---------AAS------YEFTTLTCIPGIIHYND-------TKIQLLDL 73 (356)
Q Consensus 19 g~~v~LvG~~gaGKSTLln~L~g---~~~~---------vs~------~p~TT~~~~~G~i~~~g-------~~i~~~D~ 73 (356)
-..|+|+|.+|+|||||++.|+. .... +.+ ..+.|+......+.+++ ..+.++||
T Consensus 10 ~~~I~IiG~~~~GKTTL~~~Ll~~~g~~~~~g~v~~g~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~i~liDT 89 (704)
T 2rdo_7 10 YRNIGISAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTAFWSGMAKQYEPHRINIIDT 89 (704)
T ss_pred ccEEEEECCCCCCHHHHHHHHHHhcCCcccccccCCCceeecChhhHHhcCceeeeceEEEEECCccccCCceeEEEEeC
Confidence 46899999999999999999963 2211 112 24667777667777777 88999999
Q ss_pred cccccccccCccccccccccccchhHHHHHHhcCCh
Q 018394 74 PGIIEGASEGKGRGRQVIAVSKSSDIVLMVLDASKS 109 (356)
Q Consensus 74 pGl~~~~~~~~~~~~~~~~~~~~~d~i~~v~d~~~~ 109 (356)
||..... ......++.+|.+++++|+...
T Consensus 90 PG~~df~-------~~~~~~l~~aD~aIlVvDa~~g 118 (704)
T 2rdo_7 90 PGHVDFT-------IEVERSMRVLDGAVMVYCAVGG 118 (704)
T ss_pred CCccchH-------HHHHHHHHHCCEEEEEEeCCCC
Confidence 9964311 1233345678888888888754
No 278
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=98.88 E-value=2.1e-11 Score=117.10 Aligned_cols=47 Identities=15% Similarity=0.106 Sum_probs=39.9
Q ss_pred CCCeEEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCccccccccccccceEEEECCEee
Q 018394 9 GEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKI 68 (356)
Q Consensus 9 ~~s~~v~~~~g~~v~LvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i 68 (356)
.++|++.+ |.+++|+|+||||||||++.|+|...+ ..|.+.+.|.++
T Consensus 149 ~l~l~~~~--g~vi~lvG~nGsGKTTll~~Lag~l~~-----------~~G~V~l~g~D~ 195 (359)
T 2og2_A 149 ELQLGFRK--PAVIMIVGVNGGGKTTSLGKLAHRLKN-----------EGTKVLMAAGDT 195 (359)
T ss_dssp SCCCCSSS--SEEEEEECCTTSCHHHHHHHHHHHHHH-----------TTCCEEEECCCC
T ss_pred CcceecCC--CeEEEEEcCCCChHHHHHHHHHhhccc-----------cCCEEEEecccc
Confidence 46777766 789999999999999999999998755 678998888654
No 279
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=98.87 E-value=6.3e-10 Score=106.44 Aligned_cols=158 Identities=11% Similarity=0.078 Sum_probs=85.7
Q ss_pred CCCeEEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCccccccccccccceEEEECCEeecccCccccccccccCccccc
Q 018394 9 GEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGR 88 (356)
Q Consensus 9 ~~s~~v~~~~g~~v~LvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~~D~pGl~~~~~~~~~~~~ 88 (356)
++ |.+.+ |++++|+|+||||||||+++|+|...+ ..|.+.+.|.+..-+ ..+....... .+.+
T Consensus 64 ~l-l~i~~--Gq~~gIiG~nGaGKTTLl~~I~g~~~~-----------~~g~i~~~G~~~~ev--~~~i~~~~~~-~~~~ 126 (347)
T 2obl_A 64 GL-LTCGI--GQRIGIFAGSGVGKSTLLGMICNGASA-----------DIIVLALIGERGREV--NEFLALLPQS-TLSK 126 (347)
T ss_dssp HH-SCEET--TCEEEEEECTTSSHHHHHHHHHHHSCC-----------SEEEEEEESCCHHHH--HHHHTTSCHH-HHTT
T ss_pred ee-eeecC--CCEEEEECCCCCCHHHHHHHHhcCCCC-----------CEEEEEEecccHHHH--HHHHHhhhhh-hhhc
Confidence 56 88888 889999999999999999999999765 678888777542100 0000000000 0000
Q ss_pred cccccccc-hhHHHHHHhcCChHHHHHHHHHHHHHccC---ccccccCcccccceeccceeeeecCC-CCCCCHHHHHHH
Q 018394 89 QVIAVSKS-SDIVLMVLDASKSEGHRQILTKELEAVGL---RLNKRPPQIYFKKKKTGGISFNSTLP-LTHVDEKLCYQI 163 (356)
Q Consensus 89 ~~~~~~~~-~d~i~~v~d~~~~~~~~~~i~~~L~~~~i---~l~~~~~~lS~g~~qr~~ial~~DEp-~~~LD~~~~~~i 163 (356)
......+. ......+.. ......+.+.+...+- .+-..+..+|.|+ |+++++ +.+.| |+++|+....++
T Consensus 127 ~v~~~~~~~~~~~~r~~~----~~~~~~~ae~~~~~~~~vl~~ld~~~~lS~g~-r~v~la-l~~p~~t~Gldp~~~~~l 200 (347)
T 2obl_A 127 CVLVVTTSDRPALERMKA----AFTATTIAEYFRDQGKNVLLMMDSVTRYARAA-RDVGLA-SGEPDVRGGFPPSVFSSL 200 (347)
T ss_dssp EEEEEECTTSCHHHHHHH----HHHHHHHHHHHHTTTCEEEEEEETHHHHHHHH-HHHHHH-TTCCCCBTTBCHHHHHHH
T ss_pred eEEEEECCCCCHHHHHHH----HHHHHHHHHHHHhccccHHHHHhhHHHHHHHH-HHHHHH-cCCCCcccCCCHHHHHHH
Confidence 00000000 000000000 0000001111111111 1225678899999 899988 34444 589999886655
Q ss_pred HHHh---cc---cC-----cEEEEccCCCHHHHHHHHh
Q 018394 164 LHEY---KI---HN-----AEVLFREDATVDDLIDVIE 190 (356)
Q Consensus 164 l~~l---~~---~~-----~~i~~thd~~~~~~~~~i~ 190 (356)
.+.+ .. +. ++++.+||++ +.++|.+.
T Consensus 201 ~~ller~~~~~~GsiT~~~tVl~~thdl~-~~i~d~v~ 237 (347)
T 2obl_A 201 PKLLERAGPAPKGSITAIYTVLLESDNVN-DPIGDEVR 237 (347)
T ss_dssp HHHHTTCEECSSSEEEEEEEEECCSSCCC-CHHHHHHH
T ss_pred HHHHHHHhCCCCCCeeeEEEEEEeCCCCC-ChhhhheE
Confidence 5544 32 23 6788999998 66666653
No 280
>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*
Probab=98.85 E-value=1.6e-09 Score=115.24 Aligned_cols=45 Identities=7% Similarity=-0.077 Sum_probs=34.6
Q ss_pred eeecCCCCCCCHHHHH----HHHHHhc--ccCcEEEEccCCCHHHHHHHHh
Q 018394 146 FNSTLPLTHVDEKLCY----QILHEYK--IHNAEVLFREDATVDDLIDVIE 190 (356)
Q Consensus 146 l~~DEp~~~LD~~~~~----~il~~l~--~~~~~i~~thd~~~~~~~~~i~ 190 (356)
+++|||++++|+.... .+++.+. .+.+++++||+.++.++++...
T Consensus 756 lLLDEP~~GlD~~~~~~i~~~il~~L~~~~g~tvl~vTH~~el~~l~~~~~ 806 (918)
T 3thx_B 756 VILDELGRGTSTHDGIAIAYATLEYFIRDVKSLTLFVTHYPPVCELEKNYS 806 (918)
T ss_dssp EEEESTTTTSCHHHHHHHHHHHHHHHHHTTCCEEEEECSCGGGGGHHHHTT
T ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHHHhcCCeEEEEeCcHHHHHHHhhcc
Confidence 8899999999997633 4556553 3568999999998888776543
No 281
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=98.84 E-value=3.1e-11 Score=121.77 Aligned_cols=145 Identities=11% Similarity=0.069 Sum_probs=83.2
Q ss_pred CCCCe-EEEecCCcEEEEEcCCCCcHHHHHHH--HHcCCCCccccccccccccceEEEECCEeecccCccccccccccCc
Q 018394 8 AGEGF-EVTKFGHGRVALIGFPSVGKSTLLTL--LTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGK 84 (356)
Q Consensus 8 ~~~s~-~v~~~~g~~v~LvG~~gaGKSTLln~--L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~~D~pGl~~~~~~~~ 84 (356)
.+++| .+++ |+.++|+|+||||||||+++ ++|...+ ..|.++++|.+... .+.. .....
T Consensus 29 d~i~~G~i~~--Ge~~~l~G~nGsGKSTL~~~~ll~Gl~~~-----------~~g~i~v~g~~~~~----~~~~-~~~~~ 90 (525)
T 1tf7_A 29 DDISHGGLPI--GRSTLVSGTSGTGKTLFSIQFLYNGIIEF-----------DEPGVFVTFEETPQ----DIIK-NARSF 90 (525)
T ss_dssp HHHTTSSEET--TSEEEEEESTTSSHHHHHHHHHHHHHHHH-----------CCCEEEEESSSCHH----HHHH-HHGGG
T ss_pred HHhcCCCCCC--CeEEEEEcCCCCCHHHHHHHHHHHHHHhC-----------CCCEEEEEEeCCHH----HHHH-HHHHc
Confidence 36889 9999 88999999999999999999 6787644 57889988765210 0111 11122
Q ss_pred cccccccccccchhHHHHHHhcCChHHHHHHHHHHHHHccC--ccccccCcccccceeccceeeeecCCCC-----CCCH
Q 018394 85 GRGRQVIAVSKSSDIVLMVLDASKSEGHRQILTKELEAVGL--RLNKRPPQIYFKKKKTGGISFNSTLPLT-----HVDE 157 (356)
Q Consensus 85 ~~~~~~~~~~~~~d~i~~v~d~~~~~~~~~~i~~~L~~~~i--~l~~~~~~lS~g~~qr~~ial~~DEp~~-----~LD~ 157 (356)
++..|......+ + +.++...... ..+.|+.+++ .+++.+..||+++.|+ +++||||+ ++|+
T Consensus 91 g~~~q~~~~~~~---l-~~~~~~~~~~----~~~~l~~~~l~~~~~~~~~~LS~g~~~~----lilDe~t~~~~~~~lD~ 158 (525)
T 1tf7_A 91 GWDLAKLVDEGK---L-FILDASPDPE----GQEVVGGFDLSALIERINYAIQKYRARR----VSIDSVTSVFQQYDASS 158 (525)
T ss_dssp TCCHHHHHHTTS---E-EEEECCCCSS----CCSCCSSHHHHHHHHHHHHHHHHHTCSE----EEEECSTTTSTTTCCHH
T ss_pred CCChHHhhccCc---E-EEEecCcccc----hhhhhcccCHHHHHHHHHHHHHHcCCCE----EEECCHHHHHHhcCCHH
Confidence 333322110000 0 0000000000 0011112222 2445566788888886 56788887 4577
Q ss_pred HH---HHHHHHHhcc-cCcEEEEccCCCH
Q 018394 158 KL---CYQILHEYKI-HNAEVLFREDATV 182 (356)
Q Consensus 158 ~~---~~~il~~l~~-~~~~i~~thd~~~ 182 (356)
.. +.++++.++. +.++++++|+.+.
T Consensus 159 ~~~~~l~~ll~~l~~~g~tvl~itH~~~~ 187 (525)
T 1tf7_A 159 VVRRELFRLVARLKQIGATTVMTTERIEE 187 (525)
T ss_dssp HHHHHHHHHHHHHHHHTCEEEEEEECSSS
T ss_pred HHHHHHHHHHHHHHHCCCEEEEEecCCCC
Confidence 65 4455555543 4599999999765
No 282
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=98.83 E-value=7.5e-10 Score=97.82 Aligned_cols=52 Identities=25% Similarity=0.464 Sum_probs=38.4
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHcCCCCc---cccccccccccceEEEECCEeecccCccccc
Q 018394 19 HGRVALIGFPSVGKSTLLTLLTGTHSEA---ASYEFTTLTCIPGIIHYNDTKIQLLDLPGII 77 (356)
Q Consensus 19 g~~v~LvG~~gaGKSTLln~L~g~~~~v---s~~p~TT~~~~~G~i~~~g~~i~~~D~pGl~ 77 (356)
...|+|+|++|||||||+|.|++..... +..|.++.+. .+..+.++||||..
T Consensus 12 ~~~i~~~G~~g~GKTsl~~~l~~~~~~~~~~~~~~~~~~~~-------~~~~~~l~Dt~G~~ 66 (218)
T 1nrj_B 12 QPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSAADY-------DGSGVTLVDFPGHV 66 (218)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHSSCCCBCCCSSCEEETTG-------GGSSCEEEECCCCG
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCCCCCeeeecCceEEEEe-------eCceEEEEECCCcH
Confidence 4689999999999999999999876321 2334444433 45677889999973
No 283
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=98.82 E-value=3.5e-10 Score=103.08 Aligned_cols=51 Identities=16% Similarity=0.258 Sum_probs=37.8
Q ss_pred ccceEEEeecCCCCChhhHH---H-----------H------------------hc--C-CCEEEeccccccchHHHHHH
Q 018394 195 YMKCVYVYNKIDVIGIDDVD---K-----------L------------------AR--Q-PNSVVISCNLKLNLDRLLAR 239 (356)
Q Consensus 195 ~~p~i~v~NK~Dl~~~~~~~---~-----------l------------------~~--~-~~~i~iSa~~~~~l~~L~~~ 239 (356)
..|.++|+||+|+....+.+ . + .. . .+++++||+++.|+++|.+.
T Consensus 171 ~~p~~iv~NK~D~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~SA~~~~gi~~l~~~ 250 (262)
T 1yrb_A 171 GATTIPALNKVDLLSEEEKERHRKYFEDIDYLTARLKLDPSMQGLMAYKMCSMMTEVLPPVRVLYLSAKTREGFEDLETL 250 (262)
T ss_dssp TSCEEEEECCGGGCCHHHHHHHHHHHHCHHHHHHHHHHCCSHHHHHHHHHHHHHHHHSCCCCCEECCTTTCTTHHHHHHH
T ss_pred CCCeEEEEecccccccccHHHHHHHHhChHHHHHHHhccccccchhHhHHHHHHHHhcCcccceEEEecCcccHHHHHHH
Confidence 36999999999997643211 1 0 11 1 26899999999999999999
Q ss_pred HHHHhC
Q 018394 240 MWEEMG 245 (356)
Q Consensus 240 i~~~l~ 245 (356)
|.+.+.
T Consensus 251 i~~~~~ 256 (262)
T 1yrb_A 251 AYEHYC 256 (262)
T ss_dssp HHHHHH
T ss_pred HHHHhc
Confidence 988764
No 284
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=98.80 E-value=2.7e-09 Score=96.79 Aligned_cols=34 Identities=18% Similarity=0.109 Sum_probs=25.3
Q ss_pred CCCCeEEEecCCcEEEEEcCCCCcHHHHHHHHHcCC
Q 018394 8 AGEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTH 43 (356)
Q Consensus 8 ~~~s~~v~~~~g~~v~LvG~~gaGKSTLln~L~g~~ 43 (356)
.++||++.+ +.+|||+|+||||||||+++|+|..
T Consensus 16 ~~isl~i~~--g~iigI~G~~GsGKSTl~k~L~~~l 49 (245)
T 2jeo_A 16 ENLYFQSMR--PFLIGVSGGTASGKSTVCEKIMELL 49 (245)
T ss_dssp -------CC--SEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred cceeccCCC--CEEEEEECCCCCCHHHHHHHHHHHh
Confidence 478999998 8899999999999999999999864
No 285
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=98.79 E-value=1.2e-08 Score=99.81 Aligned_cols=65 Identities=20% Similarity=0.135 Sum_probs=41.0
Q ss_pred CCCeEEEecCCcE--EEEEcCCCCcHHHHHHHHHcCCC---Cccc-cccccccccceEEEEC-C--EeecccCcccc
Q 018394 9 GEGFEVTKFGHGR--VALIGFPSVGKSTLLTLLTGTHS---EAAS-YEFTTLTCIPGIIHYN-D--TKIQLLDLPGI 76 (356)
Q Consensus 9 ~~s~~v~~~~g~~--v~LvG~~gaGKSTLln~L~g~~~---~vs~-~p~TT~~~~~G~i~~~-g--~~i~~~D~pGl 76 (356)
+++|++.+ |.. ++|+|+||||||||||+|+|... ++.. .|++|+.. .|.+.-. + ..++++|++|+
T Consensus 32 ~vsl~i~~--Gei~~vaLvG~nGaGKSTLln~L~G~~l~g~~~~~~~~~~~~~~-i~~v~Q~~~l~~~ltv~D~~~~ 105 (427)
T 2qag_B 32 LVNKSVSQ--GFCFNILCVGETGLGKSTLMDTLFNTKFEGEPATHTQPGVQLQS-NTYDLQESNVRLKLTIVSTVGF 105 (427)
T ss_dssp HHHHSCC---CCEEEEEEECSTTSSSHHHHHHHHTSCC-------CCSSCEEEE-EEEEEEC--CEEEEEEEEEECC
T ss_pred CCceEecC--CCeeEEEEECCCCCCHHHHHHHHhCccccCCcCCCCCccceEee-EEEEeecCccccccchhhhhhh
Confidence 57888888 778 99999999999999999999852 2222 34555542 2222211 1 14556676664
No 286
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=98.78 E-value=3e-09 Score=113.43 Aligned_cols=44 Identities=7% Similarity=-0.164 Sum_probs=33.5
Q ss_pred eeecCCCCCCCHHHH----HHHHHHhcc--cCcEEEEccCCCHHHHHHHH
Q 018394 146 FNSTLPLTHVDEKLC----YQILHEYKI--HNAEVLFREDATVDDLIDVI 189 (356)
Q Consensus 146 l~~DEp~~~LD~~~~----~~il~~l~~--~~~~i~~thd~~~~~~~~~i 189 (356)
+++|||++|+|+... ..+++.+.. +.+++++||+.++.++++.+
T Consensus 745 lLLDEp~~GlD~~~~~~i~~~il~~l~~~~g~~vl~aTH~~el~~lad~~ 794 (934)
T 3thx_A 745 IIIDELGRGTSTYDGFGLAWAISEYIATKIGAFCMFATHFHELTALANQI 794 (934)
T ss_dssp EEEESCSCSSCHHHHHHHHHHHHHHHHHTTCCEEEEEESCGGGGGGGGTC
T ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCCEEEEEcCcHHHHHHhccc
Confidence 789999999999763 455666653 56899999998777766543
No 287
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=98.78 E-value=2.1e-10 Score=110.68 Aligned_cols=58 Identities=31% Similarity=0.411 Sum_probs=47.5
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHcC------CCCccccccccccccceEEEECCEeecccCccccccc
Q 018394 19 HGRVALIGFPSVGKSTLLTLLTGT------HSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEG 79 (356)
Q Consensus 19 g~~v~LvG~~gaGKSTLln~L~g~------~~~vs~~p~TT~~~~~G~i~~~g~~i~~~D~pGl~~~ 79 (356)
+..++++|.||+|||||+|+|++. ...++++||||+++..+. + +..+.++||||+...
T Consensus 162 ~~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~gtT~~~~~~~--~-~~~~~liDtPG~~~~ 225 (369)
T 3ec1_A 162 GGDVYVVGCTNVGKSTFINRIIEEATGKGNVITTSYFPGTTLDMIEIP--L-ESGATLYDTPGIINH 225 (369)
T ss_dssp TSCEEEECCTTSSHHHHHHHHHHHHHHTTCCCEEEECTTSSCEEEEEE--C-STTCEEEECCSCCCC
T ss_pred cCcEEEEcCCCCchHHHHHHHHhhccCCccceeecCCCCeEEeeEEEE--e-CCCeEEEeCCCcCcH
Confidence 357999999999999999999997 466899999999987543 2 234788999998643
No 288
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=98.76 E-value=4.4e-09 Score=106.89 Aligned_cols=58 Identities=29% Similarity=0.361 Sum_probs=50.9
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcCCCCccccccccccccceEEEE-------CCEeecccCcccccc
Q 018394 20 GRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHY-------NDTKIQLLDLPGIIE 78 (356)
Q Consensus 20 ~~v~LvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~-------~g~~i~~~D~pGl~~ 78 (356)
.+|+|+|+||+|||||+|+|+|....+ ++++||++.+.|...+ .+..+.++||||+..
T Consensus 39 ~~VaivG~pnvGKStLiN~L~g~~~~~-~~~~tt~~~T~gi~~~~~~~~~~~~~~i~LiDTpGi~~ 103 (592)
T 1f5n_A 39 VVVAIVGLYRTGKSYLMNKLAGKKKGF-SLGSTVQSHTKGIWMWCVPHPKKPGHILVLLDTEGLGD 103 (592)
T ss_dssp EEEEEEEBTTSSHHHHHHHHTTCSSCS-CCCCSSSCCCCSEEEEEEECSSSTTCEEEEEEECCBCC
T ss_pred cEEEEECCCCCCHHHHHHhHcCCCCcc-ccCCCCCCceeEEEEeecccccCCCceEEEecCCCcCc
Confidence 579999999999999999999987544 8899999999998765 567899999999864
No 289
>3vqt_A RF-3, peptide chain release factor 3; translation, GTPase; HET: GDP; 1.80A {Desulfovibrio vulgaris} PDB: 3vr1_A*
Probab=98.75 E-value=6.6e-09 Score=105.20 Aligned_cols=100 Identities=25% Similarity=0.315 Sum_probs=66.8
Q ss_pred CcEEEEEcCCCCcHHHHHHHHH---cCC-------------CCcccc------ccccccccceEEEECCEeecccCcccc
Q 018394 19 HGRVALIGFPSVGKSTLLTLLT---GTH-------------SEAASY------EFTTLTCIPGIIHYNDTKIQLLDLPGI 76 (356)
Q Consensus 19 g~~v~LvG~~gaGKSTLln~L~---g~~-------------~~vs~~------p~TT~~~~~G~i~~~g~~i~~~D~pGl 76 (356)
-..|||+|..++|||||.-+|. |.. ..++++ -|.|+....-.+.|++..|.++||||-
T Consensus 31 ~RNiaIiaHvdaGKTTLtE~lL~~tG~i~~~G~V~~~~~~~~~~~D~~~~EreRGITI~s~~~~~~~~~~~iNlIDTPGH 110 (548)
T 3vqt_A 31 RRTFAIISHPDAGKTTLTEKLLLFGGAIQMAGSVKARKAARHATSDWMAMERERGISVTTSVMQFPYRDRVVNLLDTPGH 110 (548)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHHTTCHHHHHHHHHC--------------------CTTTEEEEEETTEEEEEECCCCG
T ss_pred cceEEEEeCCCCCHHHHHHHHHHhcCcccccceeecCccccccccCChHHHHHCCCcEeeceEEEEECCEEEEEEeCCCc
Confidence 3579999999999999999884 211 122332 377888888889999999999999997
Q ss_pred ccccccCccccccccccccchhHHHHHHhcCChHH-HHHHHHHHHHHccC
Q 018394 77 IEGASEGKGRGRQVIAVSKSSDIVLMVLDASKSEG-HRQILTKELEAVGL 125 (356)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~d~i~~v~d~~~~~~-~~~~i~~~L~~~~i 125 (356)
.... .+....++.+|..++|+|+....+ +.+.+.+.+...++
T Consensus 111 vDF~-------~Ev~raL~~~DgAvlVvda~~GV~~qT~~v~~~a~~~~l 153 (548)
T 3vqt_A 111 QDFS-------EDTYRVLTAVDSALVVIDAAKGVEAQTRKLMDVCRMRAT 153 (548)
T ss_dssp GGCS-------HHHHHHHHSCSEEEEEEETTTBSCHHHHHHHHHHHHTTC
T ss_pred HHHH-------HHHHHHHHhcCceEEEeecCCCcccccHHHHHHHHHhCC
Confidence 5422 234445567787888888876433 44556666666665
No 290
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=98.72 E-value=6.9e-10 Score=103.39 Aligned_cols=35 Identities=11% Similarity=0.077 Sum_probs=30.2
Q ss_pred CCCeEEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCC
Q 018394 9 GEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSE 45 (356)
Q Consensus 9 ~~s~~v~~~~g~~v~LvG~~gaGKSTLln~L~g~~~~ 45 (356)
++++.+.+ |..++|+|+||||||||++.|++...+
T Consensus 27 ~i~~~l~~--G~~~~i~G~~G~GKTTl~~~ia~~~~~ 61 (296)
T 1cr0_A 27 DKTLGARG--GEVIMVTSGSGMGKSTFVRQQALQWGT 61 (296)
T ss_dssp HHHCSBCT--TCEEEEEESTTSSHHHHHHHHHHHHHH
T ss_pred HHhcCCCC--CeEEEEEeCCCCCHHHHHHHHHHHHHH
Confidence 45667777 789999999999999999999998654
No 291
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=98.71 E-value=4.8e-09 Score=94.46 Aligned_cols=27 Identities=22% Similarity=0.204 Sum_probs=24.3
Q ss_pred EEEecCCcEEEEEcCCCCcHHHHHHHHHc
Q 018394 13 EVTKFGHGRVALIGFPSVGKSTLLTLLTG 41 (356)
Q Consensus 13 ~v~~~~g~~v~LvG~~gaGKSTLln~L~g 41 (356)
.+++ |+.++|+||||||||||+++|++
T Consensus 26 gi~~--G~~~~l~GpnGsGKSTLl~~i~~ 52 (251)
T 2ehv_A 26 GFPE--GTTVLLTGGTGTGKTTFAAQFIY 52 (251)
T ss_dssp SEET--TCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCC--CcEEEEEeCCCCCHHHHHHHHHH
Confidence 4677 78999999999999999999993
No 292
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=98.68 E-value=3e-09 Score=101.84 Aligned_cols=100 Identities=19% Similarity=0.095 Sum_probs=58.7
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHcCCC-C-ccccc---c----ccccccceEEEECCEeecccCccccccccccCcccccc
Q 018394 19 HGRVALIGFPSVGKSTLLTLLTGTHS-E-AASYE---F----TTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQ 89 (356)
Q Consensus 19 g~~v~LvG~~gaGKSTLln~L~g~~~-~-vs~~p---~----TT~~~~~G~i~~~g~~i~~~D~pGl~~~~~~~~~~~~~ 89 (356)
|.+++|+|+||||||||+|+|+|... + .+... | ||+...-+ .+. ....++|+||+.+.. +
T Consensus 215 G~~~~lvG~sG~GKSTLln~L~g~~~~~~~G~I~~~~G~g~~tt~~~~i~--~v~-q~~~l~dtpgv~e~~-----l--- 283 (358)
T 2rcn_A 215 GRISIFAGQSGVGKSSLLNALLGLQNEILTNDVSNVSGLGQHTTTAARLY--HFP-HGGDVIDSPGVREFG-----L--- 283 (358)
T ss_dssp TSEEEEECCTTSSHHHHHHHHHCCSSCCCCC-------------CCCEEE--ECT-TSCEEEECHHHHTCC-----C---
T ss_pred CCEEEEECCCCccHHHHHHHHhccccccccCCccccCCCCccceEEEEEE--EEC-CCCEecCcccHHHhh-----h---
Confidence 67999999999999999999999876 5 22221 2 23222111 111 112345666654310 0
Q ss_pred ccccccchhHHHHHHhcCChHHHHHHHHHHHHHccC--ccccccCcccccceecccee
Q 018394 90 VIAVSKSSDIVLMVLDASKSEGHRQILTKELEAVGL--RLNKRPPQIYFKKKKTGGIS 145 (356)
Q Consensus 90 ~~~~~~~~d~i~~v~d~~~~~~~~~~i~~~L~~~~i--~l~~~~~~lS~g~~qr~~ia 145 (356)
...........+.+.++.+++ +.+..+..+| |++|+++++
T Consensus 284 ---------------~~l~~~e~~~~~~e~l~~~gl~~f~~~~~~~lS-G~~~r~ala 325 (358)
T 2rcn_A 284 ---------------WHLEPEQITQGFVEFHDYLGHCKYRDCKHDADP-GCAIREAVE 325 (358)
T ss_dssp ---------------CCCCHHHHHHTSGGGGGGTTCSSSTTCCSSSCT-TCHHHHHHH
T ss_pred ---------------cCCCHHHHHHHHHHHHHHcCCchhcCCCcccCC-HHHHHHHHH
Confidence 001111222345566777777 5788889999 999999887
No 293
>3hvz_A Uncharacterized protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium; 2.20A {Clostridium leptum}
Probab=98.66 E-value=5.5e-08 Score=72.30 Aligned_cols=55 Identities=18% Similarity=0.298 Sum_probs=49.9
Q ss_pred CccEEeecCCCCCCHHHHHHHHHHhHhhcCcEeEEeccCCccCCcccCCCceeCCCCeEEEEecc
Q 018394 261 TEPVVLSVDRGGCTVEDFCNHIHRSLVKDVKYVLVWGTSARHYPQHCGLGHVLQDEDVVQIVKKK 325 (356)
Q Consensus 261 ~~~~~~~~~r~g~~v~~~a~~ih~~l~~~f~~a~~wg~s~~~~~~~vg~~~~l~d~Dvv~i~~~~ 325 (356)
.+.+.++. |+|+.|+|++||+++.+.+.+|.+ .|++|+++|+|++||+|+|++.+
T Consensus 15 G~~~~lp~---GaT~~D~A~~Ih~~lg~~~v~AkV-------NG~~v~L~~~L~~gd~VeIit~~ 69 (78)
T 3hvz_A 15 GDVISLPI---GSTVIDFAYAIHSAVGNRMIGAKV-------DGRIVPIDYKVKTGEIIDVLTTK 69 (78)
T ss_dssp SCEEEEET---TCBHHHHHHHHCHHHHHTEEEEEE-------TTEEECTTCBCCTTCBEEEEECC
T ss_pred CCEEEecC---CCCHHHHHHHhhhhhhcceEEEEE-------CCEEcCCCcccCCCCEEEEEccC
Confidence 34677888 999999999999999999999987 67889999999999999999864
No 294
>1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation; HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A* 1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T* 2zit_A* 1u2r_A* 3b78_A* 3b8h_A*
Probab=98.65 E-value=3.8e-09 Score=112.06 Aligned_cols=83 Identities=24% Similarity=0.250 Sum_probs=54.9
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcCCC-Ccc---------------ccccccccccceEEEEC----------------CEe
Q 018394 20 GRVALIGFPSVGKSTLLTLLTGTHS-EAA---------------SYEFTTLTCIPGIIHYN----------------DTK 67 (356)
Q Consensus 20 ~~v~LvG~~gaGKSTLln~L~g~~~-~vs---------------~~p~TT~~~~~G~i~~~----------------g~~ 67 (356)
..|+|+|.+|+|||||++.|++... ..+ ..++.|+......+.+. +..
T Consensus 20 rnI~IiG~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~D~~~~E~~rgiTI~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 99 (842)
T 1n0u_A 20 RNMSVIAHVDHGKSTLTDSLVQRAGIISAAKAGEARFTDTRKDEQERGITIKSTAISLYSEMSDEDVKEIKQKTDGNSFL 99 (842)
T ss_dssp EEEEEECCGGGTHHHHHHHHHHHHBCCBC------------------CCCBCCCEEEEEEECCHHHHHHCSSCCCSSEEE
T ss_pred cEEEEECCCCCCHHHHHHHHHHhcCCcccccCCCceeecCchhhhhcceeEeeceeEEEecccccccccccccccCCCce
Confidence 4799999999999999999986421 111 13456666666667675 678
Q ss_pred ecccCccccccccccCccccccccccccchhHHHHHHhcCCh
Q 018394 68 IQLLDLPGIIEGASEGKGRGRQVIAVSKSSDIVLMVLDASKS 109 (356)
Q Consensus 68 i~~~D~pGl~~~~~~~~~~~~~~~~~~~~~d~i~~v~d~~~~ 109 (356)
+.++||||..... ......++.+|.+++|+|+...
T Consensus 100 i~liDTPG~~df~-------~~~~~~l~~aD~ailVvDa~~g 134 (842)
T 1n0u_A 100 INLIDSPGHVDFS-------SEVTAALRVTDGALVVVDTIEG 134 (842)
T ss_dssp EEEECCCCCCSSC-------HHHHHHHHTCSEEEEEEETTTB
T ss_pred EEEEECcCchhhH-------HHHHHHHHhCCEEEEEEeCCCC
Confidence 8999999974321 1223334567777777776653
No 295
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=98.62 E-value=1.5e-09 Score=101.92 Aligned_cols=33 Identities=30% Similarity=0.201 Sum_probs=29.9
Q ss_pred CCCeEEEecCCcEEEEEcCCCCcHHHHHHHHHcCC
Q 018394 9 GEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTH 43 (356)
Q Consensus 9 ~~s~~v~~~~g~~v~LvG~~gaGKSTLln~L~g~~ 43 (356)
+++|++++ |++++|+||||||||||+++|+|..
T Consensus 118 ~vsl~i~~--Ge~vaIvGpsGsGKSTLl~lL~gl~ 150 (305)
T 2v9p_A 118 LWLKGIPK--KNCLAFIGPPNTGKSMLCNSLIHFL 150 (305)
T ss_dssp HHHHTCTT--CSEEEEECSSSSSHHHHHHHHHHHH
T ss_pred cceEEecC--CCEEEEECCCCCcHHHHHHHHhhhc
Confidence 56788888 8899999999999999999999984
No 296
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=98.62 E-value=4.9e-09 Score=101.04 Aligned_cols=57 Identities=30% Similarity=0.381 Sum_probs=42.3
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHcC-------CCCccccccccccccceEEEECCEeecccCcccccc
Q 018394 19 HGRVALIGFPSVGKSTLLTLLTGT-------HSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIE 78 (356)
Q Consensus 19 g~~v~LvG~~gaGKSTLln~L~g~-------~~~vs~~p~TT~~~~~G~i~~~g~~i~~~D~pGl~~ 78 (356)
+..++++|.||+|||||+|+|++. ...++++||||+++.... +. ..+.++||||+..
T Consensus 160 ~~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~~gtT~~~~~~~--~~-~~~~liDtPG~~~ 223 (368)
T 3h2y_A 160 GKDVYVVGCTNVGKSTFINRMIKEFSDETENVITTSHFPGTTLDLIDIP--LD-EESSLYDTPGIIN 223 (368)
T ss_dssp TSCEEEEEBTTSSHHHHHHHHHHHHTTSCSSCCEEECCC----CEEEEE--SS-SSCEEEECCCBCC
T ss_pred cceEEEecCCCCChhHHHHHHHhhhccccccceecCCCCCeecceEEEE--ec-CCeEEEeCCCcCc
Confidence 458999999999999999999986 234799999999887643 22 2378899999864
No 297
>3j25_A Tetracycline resistance protein TETM; antibiotic resistance, translation; HET: GCP; 7.20A {Enterococcus faecalis}
Probab=98.61 E-value=5.1e-09 Score=107.96 Aligned_cols=99 Identities=20% Similarity=0.312 Sum_probs=69.2
Q ss_pred cEEEEEcCCCCcHHHHHHHH---HcCCCC---------ccccc------cccccccceEEEECCEeecccCccccccccc
Q 018394 20 GRVALIGFPSVGKSTLLTLL---TGTHSE---------AASYE------FTTLTCIPGIIHYNDTKIQLLDLPGIIEGAS 81 (356)
Q Consensus 20 ~~v~LvG~~gaGKSTLln~L---~g~~~~---------vs~~p------~TT~~~~~G~i~~~g~~i~~~D~pGl~~~~~ 81 (356)
..|||+|...+|||||.-+| +|.... +.++- |.|+....-.+.|++..|.++||||-....
T Consensus 3 RNi~IiaHvD~GKTTL~e~LL~~~G~i~~~g~v~~g~~~~D~~~~EreRGITI~s~~~~~~~~~~~iNlIDTPGH~DF~- 81 (638)
T 3j25_A 3 INIGVLAHVDAGKTTLTESLLYNSGAITELGSVDKGTTRTDNTLLERQRGITIQTGITSFQWENTKVNIIDTPGHMDFL- 81 (638)
T ss_dssp CCCEEECCSTTSSHHHHHHHHHHHTCCSSCSSCCCSCCSTTCSTTHHHHSSCSSCCCCCCBCSSCBCCCEECCCSSSTH-
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHcCCCccccccccCCcccCCcHHHHhCCCcEEeeeEEEEECCEEEEEEECCCcHHHH-
Confidence 36899999999999999888 455432 22221 667777777788999999999999965421
Q ss_pred cCccccccccccccchhHHHHHHhcCChHH-HHHHHHHHHHHccC
Q 018394 82 EGKGRGRQVIAVSKSSDIVLMVLDASKSEG-HRQILTKELEAVGL 125 (356)
Q Consensus 82 ~~~~~~~~~~~~~~~~d~i~~v~d~~~~~~-~~~~i~~~L~~~~i 125 (356)
.+....++.+|..++|+|+..... +.+.+...+...++
T Consensus 82 ------~Ev~raL~~~DgavlVVDa~~GV~~qT~~v~~~a~~~~l 120 (638)
T 3j25_A 82 ------AEVYRSLSVLDGAILLISAKDGVQAQTRILFHALRKMGI 120 (638)
T ss_dssp ------HHHHHHHTTCSEEECCEESSCTTCSHHHHHHHHHHHHTC
T ss_pred ------HHHHHHHHHhCEEEEEEeCCCCCcHHHHHHHHHHHHcCC
Confidence 344445677888888888876433 34455555555555
No 298
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=98.61 E-value=1.8e-08 Score=92.57 Aligned_cols=56 Identities=29% Similarity=0.500 Sum_probs=38.4
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcCCC-CccccccccccccceEEEECCEeecccCcccccc
Q 018394 20 GRVALIGFPSVGKSTLLTLLTGTHS-EAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIE 78 (356)
Q Consensus 20 ~~v~LvG~~gaGKSTLln~L~g~~~-~vs~~p~TT~~~~~G~i~~~g~~i~~~D~pGl~~ 78 (356)
..++++|.||+|||||+|+|+|... .+++.||||+... .+.+ +..+.++||||+..
T Consensus 100 ~~v~~vG~~~vGKSslin~l~~~~~~~~~~~~g~T~~~~--~~~~-~~~~~l~DtpG~~~ 156 (262)
T 3cnl_A 100 ARVLIVGVPNTGKSTIINKLKGKRASSVGAQPGITKGIQ--WFSL-ENGVKILDTPGILY 156 (262)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTCC----------CCSC--EEEC-TTSCEEESSCEECC
T ss_pred hheEEeCCCCCCHHHHHHHHhcccccccCCCCCCccceE--EEEe-CCCEEEEECCCccc
Confidence 3899999999999999999999874 6899999999864 2333 44688999999864
No 299
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=98.59 E-value=5.6e-08 Score=93.19 Aligned_cols=42 Identities=10% Similarity=-0.120 Sum_probs=32.8
Q ss_pred eeecCCCCCCCHHHHHHHHHHhcccCcEEEEccCCCHHHHHHHHh
Q 018394 146 FNSTLPLTHVDEKLCYQILHEYKIHNAEVLFREDATVDDLIDVIE 190 (356)
Q Consensus 146 l~~DEp~~~LD~~~~~~il~~l~~~~~~i~~thd~~~~~~~~~i~ 190 (356)
+++|||+ |.+....+++....+.++++++|+.+..+.++.+.
T Consensus 200 illDEp~---d~e~~~~~~~~~~~G~~vl~t~H~~~~~~~~dRli 241 (356)
T 3jvv_A 200 ILVGEMR---DLETIRLALTAAETGHLVFGTLHTTSAAKTIDRVV 241 (356)
T ss_dssp EEESCCC---SHHHHHHHHHHHHTTCEEEEEESCSSHHHHHHHHH
T ss_pred EecCCCC---CHHHHHHHHHHHhcCCEEEEEEccChHHHHHHHHh
Confidence 7899999 67776666666556779999999999887777653
No 300
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=98.59 E-value=9e-09 Score=90.53 Aligned_cols=65 Identities=15% Similarity=0.180 Sum_probs=51.1
Q ss_pred CCeEEEecCCcEEEEEcCCCCcHHHHHHHHHcCCC--CccccccccccccceEEEECCEeecccCcccccc
Q 018394 10 EGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHS--EAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIE 78 (356)
Q Consensus 10 ~s~~v~~~~g~~v~LvG~~gaGKSTLln~L~g~~~--~vs~~p~TT~~~~~G~i~~~g~~i~~~D~pGl~~ 78 (356)
.++...+ |..++|+||||||||||+++|++... .....+.|||.|..|. ++|.++.++|...+..
T Consensus 12 ~~~~~~~--g~~ivl~GPSGaGKsTL~~~L~~~~~~~~~~~vs~TTR~p~~gE--~~G~~y~fvs~~~f~~ 78 (197)
T 3ney_A 12 ENLYFQG--RKTLVLIGASGVGRSHIKNALLSQNPEKFVYPVPYTTRPPRKSE--EDGKEYHFISTEEMTR 78 (197)
T ss_dssp ----CCS--CCEEEEECCTTSSHHHHHHHHHHHCTTTEECCCCEECSCCCTTC--CTTSSCEECCHHHHHH
T ss_pred ccCCCCC--CCEEEEECcCCCCHHHHHHHHHhhCCccEEeeecccccCCcCCe--eccccceeccHHHhhh
Confidence 4555556 78999999999999999999998764 3567789999999997 6888888888776543
No 301
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=98.58 E-value=1.3e-08 Score=102.60 Aligned_cols=120 Identities=11% Similarity=0.073 Sum_probs=77.0
Q ss_pred eEEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCccccccccccccceE--EEECCEeecccCccccccccccCcccccc
Q 018394 12 FEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGI--IHYNDTKIQLLDLPGIIEGASEGKGRGRQ 89 (356)
Q Consensus 12 ~~v~~~~g~~v~LvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~--i~~~g~~i~~~D~pGl~~~~~~~~~~~~~ 89 (356)
..+.+ |..++|+|+||||||||++.++|...+ . |. +.+.+. +.+. +
T Consensus 276 g~i~~--G~i~~i~G~~GsGKSTLl~~l~g~~~~-----------~-G~~vi~~~~e-----e~~~-------------~ 323 (525)
T 1tf7_A 276 GGFFK--DSIILATGATGTGKTLLVSRFVENACA-----------N-KERAILFAYE-----ESRA-------------Q 323 (525)
T ss_dssp SSEES--SCEEEEEECTTSSHHHHHHHHHHHHHT-----------T-TCCEEEEESS-----SCHH-------------H
T ss_pred CCCCC--CcEEEEEeCCCCCHHHHHHHHHHHHHh-----------C-CCCEEEEEEe-----CCHH-------------H
Confidence 46777 789999999999999999999997543 1 21 222111 1110 0
Q ss_pred ccccccchhHHHHHHhcCChHHHHHHHHHHHHHccC--ccccccCcccccceecccee---------eeecCCCCCCCHH
Q 018394 90 VIAVSKSSDIVLMVLDASKSEGHRQILTKELEAVGL--RLNKRPPQIYFKKKKTGGIS---------FNSTLPLTHVDEK 158 (356)
Q Consensus 90 ~~~~~~~~d~i~~v~d~~~~~~~~~~i~~~L~~~~i--~l~~~~~~lS~g~~qr~~ia---------l~~DEp~~~LD~~ 158 (356)
+. .. .. ..... +.+ +...|+ ..+..+..||+|++|++.++ +++| ||++||..
T Consensus 324 l~---~~------~~-~~g~~-----~~~-~~~~g~~~~~~~~p~~LS~g~~q~~~~a~~l~~~p~llilD-p~~~Ld~~ 386 (525)
T 1tf7_A 324 LL---RN------AY-SWGMD-----FEE-MERQNLLKIVCAYPESAGLEDHLQIIKSEINDFKPARIAID-SLSALARG 386 (525)
T ss_dssp HH---HH------HH-TTSCC-----HHH-HHHTTSEEECCCCGGGSCHHHHHHHHHHHHHTTCCSEEEEE-CHHHHTSS
T ss_pred HH---HH------HH-HcCCC-----HHH-HHhCCCEEEEEeccccCCHHHHHHHHHHHHHhhCCCEEEEc-ChHHHHhh
Confidence 00 00 00 00000 111 233454 46777889999999999887 8899 99999977
Q ss_pred -----H---HHHHHHHhcc-cCcEEEEccCC
Q 018394 159 -----L---CYQILHEYKI-HNAEVLFREDA 180 (356)
Q Consensus 159 -----~---~~~il~~l~~-~~~~i~~thd~ 180 (356)
. +.++++.++. +.++++++|+.
T Consensus 387 ~~~~~~~~~i~~ll~~l~~~g~tvilvsh~~ 417 (525)
T 1tf7_A 387 VSNNAFRQFVIGVTGYAKQEEITGLFTNTSD 417 (525)
T ss_dssp SCHHHHHHHHHHHHHHHHHTTCEEEEEEECS
T ss_pred CChHHHHHHHHHHHHHHHhCCCEEEEEECcc
Confidence 4 4455665554 45899999997
No 302
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=98.58 E-value=1.4e-08 Score=95.23 Aligned_cols=122 Identities=16% Similarity=0.074 Sum_probs=61.7
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHcCCCC-cccccc-------ccccccceEEEECCEeecccCccccccccc-cCcccccc
Q 018394 19 HGRVALIGFPSVGKSTLLTLLTGTHSE-AASYEF-------TTLTCIPGIIHYNDTKIQLLDLPGIIEGAS-EGKGRGRQ 89 (356)
Q Consensus 19 g~~v~LvG~~gaGKSTLln~L~g~~~~-vs~~p~-------TT~~~~~G~i~~~g~~i~~~D~pGl~~~~~-~~~~~~~~ 89 (356)
+.+++|+|+||||||||+|+|+ ...+ .+...+ ||+.+. .+...+. -.++|+||+..... .... ...
T Consensus 165 G~i~~l~G~sG~GKSTLln~l~-~~~~~~G~i~~~~~~G~~~t~~~~--~~~~~~~-g~v~d~pg~~~~~l~~~lt-~e~ 239 (302)
T 2yv5_A 165 GFICILAGPSGVGKSSILSRLT-GEELRTQEVSEKTERGRHTTTGVR--LIPFGKG-SFVGDTPGFSKVEATMFVK-PRE 239 (302)
T ss_dssp TCEEEEECSTTSSHHHHHHHHH-SCCCCCSCC---------CCCCEE--EEEETTT-EEEESSCCCSSCCGGGTSC-GGG
T ss_pred CcEEEEECCCCCCHHHHHHHHH-HhhCcccccccccCCCCCceeeEE--EEEcCCC-cEEEECcCcCcCcccccCC-HHH
Confidence 6799999999999999999999 7654 344443 443321 1222111 12457887642110 0000 011
Q ss_pred ccccccchhHHHHHH-hcCChHHHHHHHHHHHHHccC---ccccccCcccccceecccee
Q 018394 90 VIAVSKSSDIVLMVL-DASKSEGHRQILTKELEAVGL---RLNKRPPQIYFKKKKTGGIS 145 (356)
Q Consensus 90 ~~~~~~~~d~i~~v~-d~~~~~~~~~~i~~~L~~~~i---~l~~~~~~lS~g~~qr~~ia 145 (356)
....+....-+..-. +.....+....+.++|+.++| +.++++..||+.+++++.+|
T Consensus 240 l~~~f~~~~~~~c~~~~~~~~~e~~~~v~~~l~~~~L~~~~~~~~~~~ls~~~~R~~~~~ 299 (302)
T 2yv5_A 240 VRNYFREFLRYQCKYPDCTHTNEPGCAVKEAVKNGEISCERYKSYLKIIKVYLEEIKELC 299 (302)
T ss_dssp GGGGCGGGHHHHHHSTTCCSSSCTTCHHHHHHHTTSSCHHHHHHHHHHTTCCCTTHHHHS
T ss_pred HHHHHHHHHHccCCCCCCCCCCCCCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHh
Confidence 111111100010001 111112223467888999998 45677778887555544443
No 303
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=98.58 E-value=9.8e-08 Score=92.05 Aligned_cols=118 Identities=17% Similarity=0.037 Sum_probs=70.0
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHcCCCCcccccccccccc-ceEEEECCEeecccCccccccccccCccccccccccccch
Q 018394 19 HGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCI-PGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQVIAVSKSS 97 (356)
Q Consensus 19 g~~v~LvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~-~G~i~~~g~~i~~~D~pGl~~~~~~~~~~~~~~~~~~~~~ 97 (356)
|..++|+||||||||||+++|+|...+ . .|.|.+.+.++.. .. ....+...|.....
T Consensus 136 g~~i~ivG~~GsGKTTll~~l~~~~~~-----------~~~g~I~~~e~~~e~-~~-------~~~~~~v~Q~~~g~--- 193 (372)
T 2ewv_A 136 MGLILVTGPTGSGKSTTIASMIDYINQ-----------TKSYHIITIEDPIEY-VF-------KHKKSIVNQREVGE--- 193 (372)
T ss_dssp SEEEEEECSSSSSHHHHHHHHHHHHHH-----------HSCCEEEEEESSCCS-CC-------CCSSSEEEEEEBTT---
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhcCc-----------CCCcEEEEecccHhh-hh-------ccCceEEEeeecCC---
Confidence 679999999999999999999998644 4 6888665544432 10 11122222210000
Q ss_pred hHHHHHHhcCChHHHHHHHHHHHHHccCccccccCcccccceeccceeeeecCCCCCCCHHHHHHHHHHhcccCcEEEEc
Q 018394 98 DIVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNAEVLFR 177 (356)
Q Consensus 98 d~i~~v~d~~~~~~~~~~i~~~L~~~~i~l~~~~~~lS~g~~qr~~ial~~DEp~~~LD~~~~~~il~~l~~~~~~i~~t 177 (356)
+ ...- ...+...| ...| =.+++|||+ |++.+..+++....+.+++.++
T Consensus 194 ~-------~~~~---~~~l~~~L-------~~~p------------d~illdE~~---d~e~~~~~l~~~~~g~~vi~t~ 241 (372)
T 2ewv_A 194 D-------TKSF---ADALRAAL-------REDP------------DVIFVGEMR---DLETVETALRAAETGHLVFGTL 241 (372)
T ss_dssp T-------BSCS---HHHHHHHT-------TSCC------------SEEEESCCC---SHHHHHHHHHHHTTTCEEEECC
T ss_pred C-------HHHH---HHHHHHHh-------hhCc------------CEEEECCCC---CHHHHHHHHHHHhcCCEEEEEE
Confidence 0 0000 00111111 0001 127889999 7887777777766667888999
Q ss_pred cCCCHHHHHHHHh
Q 018394 178 EDATVDDLIDVIE 190 (356)
Q Consensus 178 hd~~~~~~~~~i~ 190 (356)
|+.+..+.++.+.
T Consensus 242 H~~~~~~~~~rl~ 254 (372)
T 2ewv_A 242 HTNTAIDTIHRIV 254 (372)
T ss_dssp CCCSHHHHHHHHH
T ss_pred CcchHHHHHHHHH
Confidence 9988777776653
No 304
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=98.58 E-value=4e-09 Score=89.61 Aligned_cols=46 Identities=20% Similarity=0.035 Sum_probs=38.6
Q ss_pred CCCeEEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCccccccccccccceEEEECCEee
Q 018394 9 GEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKI 68 (356)
Q Consensus 9 ~~s~~v~~~~g~~v~LvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i 68 (356)
++||++.+ |++++|+||||||||||+++|+|.. + ..|.+.++|.++
T Consensus 25 ~vsl~i~~--Ge~v~L~G~nGaGKTTLlr~l~g~l-~-----------~~G~V~~~g~~i 70 (158)
T 1htw_A 25 LLKLHTEK--AIMVYLNGDLGAGKTTLTRGMLQGI-G-----------HQGNVKSPTYTL 70 (158)
T ss_dssp HHHHCCSS--CEEEEEECSTTSSHHHHHHHHHHHT-T-----------CCSCCCCCTTTC
T ss_pred ccccccCC--CCEEEEECCCCCCHHHHHHHHHHhC-C-----------CCCeEEECCEee
Confidence 46788888 8899999999999999999999987 6 567777766544
No 305
>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*
Probab=98.55 E-value=2.1e-08 Score=105.50 Aligned_cols=44 Identities=2% Similarity=-0.134 Sum_probs=32.6
Q ss_pred eeecCCCCCCCHHH----HHHHHHHhcc--cCcEEEEccCCCHHHHHHHH
Q 018394 146 FNSTLPLTHVDEKL----CYQILHEYKI--HNAEVLFREDATVDDLIDVI 189 (356)
Q Consensus 146 l~~DEp~~~LD~~~----~~~il~~l~~--~~~~i~~thd~~~~~~~~~i 189 (356)
+++|||++|+|+.. ...+++.+.. +.+++++||+..+.++++.+
T Consensus 690 lLLDEp~~Gtd~~d~~~i~~~ll~~l~~~~g~~vl~~TH~~el~~l~d~~ 739 (800)
T 1wb9_A 690 VLMDEIGRGTSTYDGLSLAWACAENLANKIKALTLFATHYFELTQLPEKM 739 (800)
T ss_dssp EEEESCCCCSSSSHHHHHHHHHHHHHHHTTCCEEEEECSCGGGGGHHHHS
T ss_pred EEEECCCCCCChhHHHHHHHHHHHHHHhccCCeEEEEeCCHHHHHHhhhh
Confidence 78999988777643 2566777654 45899999998877766654
No 306
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=98.52 E-value=2.2e-08 Score=88.95 Aligned_cols=29 Identities=17% Similarity=0.173 Sum_probs=25.7
Q ss_pred EEecCCcEEEEEcCCCCcHHHHHHHHHcCCC
Q 018394 14 VTKFGHGRVALIGFPSVGKSTLLTLLTGTHS 44 (356)
Q Consensus 14 v~~~~g~~v~LvG~~gaGKSTLln~L~g~~~ 44 (356)
+++ |+.++|+||||||||||+++|+|...
T Consensus 22 i~~--G~~~~l~G~nGsGKSTll~~l~g~~~ 50 (231)
T 4a74_A 22 IET--QAITEVFGEFGSGKTQLAHTLAVMVQ 50 (231)
T ss_dssp EES--SEEEEEEESTTSSHHHHHHHHHHHTT
T ss_pred CCC--CcEEEEECCCCCCHHHHHHHHHHHHh
Confidence 566 78999999999999999999999543
No 307
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=98.51 E-value=1e-07 Score=87.93 Aligned_cols=66 Identities=6% Similarity=-0.070 Sum_probs=42.6
Q ss_pred HHHHHHHccC--ccccccCcccccceecccee------eeecCCCC--CCCHH---HHHHH---HHHhc--ccCcEEEEc
Q 018394 116 LTKELEAVGL--RLNKRPPQIYFKKKKTGGIS------FNSTLPLT--HVDEK---LCYQI---LHEYK--IHNAEVLFR 177 (356)
Q Consensus 116 i~~~L~~~~i--~l~~~~~~lS~g~~qr~~ia------l~~DEp~~--~LD~~---~~~~i---l~~l~--~~~~~i~~t 177 (356)
....++.+.+ ..++.+..+|.++.+++... +++|||++ ++|+. .+.++ |..+. .+.++|+++
T Consensus 99 ~~~~~~~l~l~~~~~~~~~~ls~g~~~~i~~l~~~~~livlDe~~~~~~~d~~~~~~~~~~~~~L~~l~~~~g~tvi~i~ 178 (279)
T 1nlf_A 99 RQAVADGLLIQPLIGSLPNIMAPEWFDGLKRAAEGRRLMVLDTLRRFHIEEENASGPMAQVIGRMEAIAADTGCSIVFLH 178 (279)
T ss_dssp HHHHHHHEEECCCTTSCCCTTSHHHHHHHHHHHTTCSEEEEECGGGGCCSCTTCHHHHHHHHHHHHHHHHHHCCEEEEEE
T ss_pred hhhccCceEEeecCCCCcccCCHHHHHHHHHhcCCCCEEEECCHHHhcCCCcCchHHHHHHHHHHHHHHHHcCCEEEEEe
Confidence 3455666666 45667888999887765321 89999999 88862 22333 44442 245888999
Q ss_pred cCCC
Q 018394 178 EDAT 181 (356)
Q Consensus 178 hd~~ 181 (356)
|+..
T Consensus 179 H~~~ 182 (279)
T 1nlf_A 179 HASK 182 (279)
T ss_dssp EC--
T ss_pred cCCC
Confidence 9764
No 308
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=98.50 E-value=2.8e-08 Score=87.51 Aligned_cols=25 Identities=28% Similarity=0.248 Sum_probs=23.5
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHcCC
Q 018394 19 HGRVALIGFPSVGKSTLLTLLTGTH 43 (356)
Q Consensus 19 g~~v~LvG~~gaGKSTLln~L~g~~ 43 (356)
+.+++|+|+||||||||+++|+|..
T Consensus 6 ~~~i~i~G~~GsGKSTl~~~l~~~~ 30 (211)
T 3asz_A 6 PFVIGIAGGTASGKTTLAQALARTL 30 (211)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHh
Confidence 6899999999999999999999974
No 309
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=98.49 E-value=2.7e-08 Score=86.91 Aligned_cols=25 Identities=36% Similarity=0.445 Sum_probs=23.1
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHcCC
Q 018394 19 HGRVALIGFPSVGKSTLLTLLTGTH 43 (356)
Q Consensus 19 g~~v~LvG~~gaGKSTLln~L~g~~ 43 (356)
|++++|+|+||||||||+++|+|..
T Consensus 1 G~~i~i~G~nG~GKTTll~~l~g~~ 25 (189)
T 2i3b_A 1 ARHVFLTGPPGVGKTTLIHKASEVL 25 (189)
T ss_dssp CCCEEEESCCSSCHHHHHHHHHHHH
T ss_pred CCEEEEECCCCChHHHHHHHHHhhc
Confidence 4689999999999999999999975
No 310
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=98.49 E-value=2.6e-08 Score=89.22 Aligned_cols=52 Identities=17% Similarity=0.076 Sum_probs=29.4
Q ss_pred CCCCCeEEEecCCcEEEEEcCCCCcHHHHHHHHH-cCCCC-ccccccccccccceE
Q 018394 7 GAGEGFEVTKFGHGRVALIGFPSVGKSTLLTLLT-GTHSE-AASYEFTTLTCIPGI 60 (356)
Q Consensus 7 ~~~~s~~v~~~~g~~v~LvG~~gaGKSTLln~L~-g~~~~-vs~~p~TT~~~~~G~ 60 (356)
.+++||++.+ |.+++|+||||||||||+++|+ |...+ ....+-+|+.|..|.
T Consensus 17 ~~~~sl~v~~--G~ii~l~Gp~GsGKSTl~~~L~~~~~~~~~~~~~~~~~~~~~g~ 70 (231)
T 3lnc_A 17 QGPGSMLKSV--GVILVLSSPSGCGKTTVANKLLEKQKNNIVKSVSVTTRAARKGE 70 (231)
T ss_dssp -----CCEEC--CCEEEEECSCC----CHHHHHHC----CEEECCCEESSCCCTTC
T ss_pred cCCCCcccCC--CCEEEEECCCCCCHHHHHHHHHhcCCCCcccccccCCCCCCccc
Confidence 4689999999 7899999999999999999999 98643 222344555555553
No 311
>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*
Probab=98.48 E-value=1.1e-08 Score=107.27 Aligned_cols=25 Identities=32% Similarity=0.271 Sum_probs=23.2
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHcCC
Q 018394 19 HGRVALIGFPSVGKSTLLTLLTGTH 43 (356)
Q Consensus 19 g~~v~LvG~~gaGKSTLln~L~g~~ 43 (356)
|..++|+|||||||||||++|+|..
T Consensus 576 g~i~~I~GpNGsGKSTlLr~iagl~ 600 (765)
T 1ewq_A 576 HELVLITGPNMAGKSTFLRQTALIA 600 (765)
T ss_dssp SCEEEEESCSSSSHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCChHHHHHHHHhhh
Confidence 5799999999999999999999864
No 312
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=98.42 E-value=1e-08 Score=96.79 Aligned_cols=48 Identities=25% Similarity=0.340 Sum_probs=34.3
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcCCCCccccccccccccceEEEECCEeecc
Q 018394 20 GRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQL 70 (356)
Q Consensus 20 ~~v~LvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~ 70 (356)
+.++|+|++|||||||+|.|.|.... +--.-+.+..|.+.++|.++..
T Consensus 5 ~v~~i~G~~GaGKTTll~~l~~~~~~---~~~aVi~~d~G~i~idg~~l~~ 52 (318)
T 1nij_A 5 AVTLLTGFLGAGKTTLLRHILNEQHG---YKIAVIENEFGEVSVDDQLIGD 52 (318)
T ss_dssp EEEEEEESSSSSCHHHHHHHHHSCCC---CCEEEECSSCCSCCEEEEEECT
T ss_pred cEEEEEecCCCCHHHHHHHHHhhcCC---CcEEEEEecCcccCccHHHHhC
Confidence 58999999999999999999987510 0000112367888888877654
No 313
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=98.41 E-value=2e-08 Score=105.85 Aligned_cols=144 Identities=13% Similarity=0.066 Sum_probs=87.5
Q ss_pred CCcHHHHHHHHHcCCCCccccccccccccceEEEECCEeecccCccccccccccCccccccccc----------ccc-ch
Q 018394 29 SVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQVIA----------VSK-SS 97 (356)
Q Consensus 29 gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~~D~pGl~~~~~~~~~~~~~~~~----------~~~-~~ 97 (356)
..||++|.+.++....| .+-|+-+.+..|.+.++|.+|.-+..-.+.+ ..++..+... .+. ..
T Consensus 272 ~~~~~~~~~~~~~~~Cp--~C~G~Rl~~~~~~v~~~G~~I~~~~~~~v~e----~~~~~~~~~~~~~~~~~~~~~~~~~~ 345 (842)
T 2vf7_A 272 ASMKKRVQGYMISEECP--LCHGKRLRQEALNVTFAGLDITELSRLPLAR----VSELLRPYAEEREPGHAERVKNRPEQ 345 (842)
T ss_dssp HHHHHHHGGGCEEEECS--SSSSSCBCTTTTTCBBTTBCHHHHHHSBHHH----HHHHHHHHHTTCSSCSTTSSSSCSSH
T ss_pred HHHHHHHHhhccccCCC--CCCCCccCHHHhhcccCCccHHHHhhcCHHH----HHHHHHhhhhhhhhcccchhhcchhh
Confidence 35788887777665444 4668888888999999998764210000000 0000000000 000 00
Q ss_pred hHHHHHHhcCChHHHHHHHHHHHHHccC---ccccccCcccccceecccee-----------eeecCCCCCCCHHHHHHH
Q 018394 98 DIVLMVLDASKSEGHRQILTKELEAVGL---RLNKRPPQIYFKKKKTGGIS-----------FNSTLPLTHVDEKLCYQI 163 (356)
Q Consensus 98 d~i~~v~d~~~~~~~~~~i~~~L~~~~i---~l~~~~~~lS~g~~qr~~ia-----------l~~DEp~~~LD~~~~~~i 163 (356)
.-+..-+ ..+-..++. .|..+|+ .+++.+.+||+||+||+.|| +++||||++||+..+..+
T Consensus 346 ~~i~~~i----~~ei~~rl~-~L~~vGL~~l~l~r~~~tLSGGe~QRV~LA~aL~~~p~~~llILDEPT~~Ld~~~~~~L 420 (842)
T 2vf7_A 346 AIALQRM----AADLVKRLD-VLLHLGLGYLGLDRSTPTLSPGELQRLRLATQLYSNLFGVVYVLDEPSAGLHPADTEAL 420 (842)
T ss_dssp HHHHHHH----HHHHHHHHH-HHHHTTCTTSBTTCBGGGSCHHHHHHHHHHHHTTTCCCSCEEEEECTTTTCCGGGHHHH
T ss_pred HHHHHHH----HHHHHHHHH-HHHhCCCCcCCccCCcCcCCHHHHHHHHHHHHHhhCCCCeEEEeeCccccCCHHHHHHH
Confidence 0011000 112223444 5778888 36899999999999999977 889999999998876555
Q ss_pred HH---Hhc-ccCcEEEEccCCCHH
Q 018394 164 LH---EYK-IHNAEVLFREDATVD 183 (356)
Q Consensus 164 l~---~l~-~~~~~i~~thd~~~~ 183 (356)
++ .+. .++++|+++||..+.
T Consensus 421 ~~~l~~L~~~G~TVIvVeHdl~~l 444 (842)
T 2vf7_A 421 LSALENLKRGGNSLFVVEHDLDVI 444 (842)
T ss_dssp HHHHHHHHTTTCEEEEECCCHHHH
T ss_pred HHHHHHHHHcCCEEEEEcCCHHHH
Confidence 44 554 367999999997543
No 314
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=98.40 E-value=7.2e-07 Score=78.94 Aligned_cols=49 Identities=20% Similarity=0.278 Sum_probs=36.0
Q ss_pred cceEEEeecCCCCCh-----hhHHHH-hc---CCCEEEeccccccchHHHHHHHHHHh
Q 018394 196 MKCVYVYNKIDVIGI-----DDVDKL-AR---QPNSVVISCNLKLNLDRLLARMWEEM 244 (356)
Q Consensus 196 ~p~i~v~NK~Dl~~~-----~~~~~l-~~---~~~~i~iSa~~~~~l~~L~~~i~~~l 244 (356)
+|.++|+||+|+... ++.... .. ..+++++||++|.|+++|.+.+.+.+
T Consensus 165 ~~~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~~ 222 (226)
T 2hf9_A 165 TADLIVINKIDLADAVGADIKKMENDAKRINPDAEVVLLSLKTMEGFDKVLEFIEKSV 222 (226)
T ss_dssp TCSEEEEECGGGHHHHTCCHHHHHHHHHHHCTTSEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred cCCEEEEeccccCchhHHHHHHHHHHHHHhCCCCeEEEEEecCCCCHHHHHHHHHHHH
Confidence 588999999998643 122222 11 23588999999999999999987765
No 315
>1f2t_B RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_B* 1us8_B*
Probab=98.39 E-value=1.4e-07 Score=79.19 Aligned_cols=69 Identities=13% Similarity=0.096 Sum_probs=50.6
Q ss_pred cccccCcccccceecccee---------------eeecCCCCCCCHHHHHHHHH---Hhc-ccCcEEEEccCCCHHHHHH
Q 018394 127 LNKRPPQIYFKKKKTGGIS---------------FNSTLPLTHVDEKLCYQILH---EYK-IHNAEVLFREDATVDDLID 187 (356)
Q Consensus 127 l~~~~~~lS~g~~qr~~ia---------------l~~DEp~~~LD~~~~~~il~---~l~-~~~~~i~~thd~~~~~~~~ 187 (356)
.++++..||+||+||+++| +++||||++||+.....+++ .+. .+.+++++||+....+
T Consensus 51 ~~~~~~~LSgGe~qrv~lA~~Lalaral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tiiivsH~~~~~~--- 127 (148)
T 1f2t_B 51 KERPLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVSHDEELKD--- 127 (148)
T ss_dssp EEECGGGSCHHHHHHHHHHHHHHHHHHHHSSCSEEEEESCSCTTCHHHHHHHHHHHHHTGGGSSEEEEEESCGGGGG---
T ss_pred ccCChhHCCHHHHHHHHHHhhhHHHHHHcCCCCEEEEECCCccCCHHHHHHHHHHHHHHHccCCEEEEEEChHHHHH---
Confidence 4677899999999999651 88999999999988555544 443 2458999999974322
Q ss_pred HHhccccccceEEEeecC
Q 018394 188 VIEGNRKYMKCVYVYNKI 205 (356)
Q Consensus 188 ~i~~~~~~~p~i~v~NK~ 205 (356)
.++.+++++|.
T Consensus 128 -------~~d~ii~l~~~ 138 (148)
T 1f2t_B 128 -------AADHVIRISLE 138 (148)
T ss_dssp -------GCSEEEEEEEE
T ss_pred -------hCCEEEEEEcC
Confidence 24667777653
No 316
>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_B*
Probab=98.38 E-value=8.2e-08 Score=90.70 Aligned_cols=84 Identities=18% Similarity=0.207 Sum_probs=50.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCc-cccccccccccceEEEECCEeecccCccccccccccCccccccccccccchhH
Q 018394 21 RVALIGFPSVGKSTLLTLLTGTHSEA-ASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQVIAVSKSSDI 99 (356)
Q Consensus 21 ~v~LvG~~gaGKSTLln~L~g~~~~v-s~~p~TT~~~~~G~i~~~g~~i~~~D~pGl~~~~~~~~~~~~~~~~~~~~~d~ 99 (356)
+|.|+|.+|||||||++.+.+...+- ....+.|.......+. ....++++||||--+.... .+ .....++.++.
T Consensus 1 KIvllGdsgvGKTSLl~~~~~~~~~~~~~~~~~Tig~~~~~v~-~~v~LqIWDTAGQErf~~~--~l--~~~~yyr~a~~ 75 (331)
T 3r7w_B 1 MVLLMGVRRCGKSSICKVVFHNMQPLDTLYLESTSNPSLEHFS-TLIDLAVMELPGQLNYFEP--SY--DSERLFKSVGA 75 (331)
T ss_dssp CEEEECSTTSSTTHHHHHHHSCCCSGGGTTCCCCCSCCCEEEC-SSSCEEEEECCSCSSSCCC--SH--HHHHHHTTCSE
T ss_pred CEEEECCCCCCHHHHHHHHHcCCCCCccceecCeeeeeeEEEc-cEEEEEEEECCCchhccch--hh--hhhhhccCCCE
Confidence 37899999999999999888664331 1123455555544431 2256788999984321000 00 11223567777
Q ss_pred HHHHHhcCCh
Q 018394 100 VLMVLDASKS 109 (356)
Q Consensus 100 i~~v~d~~~~ 109 (356)
+++|+|....
T Consensus 76 ~IlV~Ditd~ 85 (331)
T 3r7w_B 76 LVYVIDSQDE 85 (331)
T ss_dssp EEEECCCSSC
T ss_pred EEEEEECCch
Confidence 7777776653
No 317
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=98.38 E-value=2.4e-08 Score=85.84 Aligned_cols=46 Identities=17% Similarity=0.165 Sum_probs=29.4
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcCCCCccccccccccccceEEEECCEeecccCc
Q 018394 20 GRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDL 73 (356)
Q Consensus 20 ~~v~LvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~~D~ 73 (356)
..++|+|++|||||||+++|++...+- ....|.|.++|.++.-+|.
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~~~~--------g~~~G~I~~dg~~i~~~~~ 48 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPILRER--------GLRVAVVKRHAHGDFEIDK 48 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHHHHT--------TCCEEEEEC----------
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhhhc--------CCceEEEEEcCcccccCCc
Confidence 479999999999999999999986540 0027999999988654553
No 318
>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*
Probab=98.37 E-value=4.7e-08 Score=105.36 Aligned_cols=39 Identities=3% Similarity=-0.159 Sum_probs=30.3
Q ss_pred eeecCCCCCCCHHH----HHHHHHHhcc--cCcEEEEccCCCHHH
Q 018394 146 FNSTLPLTHVDEKL----CYQILHEYKI--HNAEVLFREDATVDD 184 (356)
Q Consensus 146 l~~DEp~~~LD~~~----~~~il~~l~~--~~~~i~~thd~~~~~ 184 (356)
+++|||++++|+.. +..+++.+.. +.+++++||+.++..
T Consensus 872 lLLDEp~~Gtd~~dg~~~~~~il~~L~~~~g~~vl~~TH~~el~~ 916 (1022)
T 2o8b_B 872 VLVDELGRGTATFDGTAIANAVVKELAETIKCRTLFSTHYHSLVE 916 (1022)
T ss_dssp EEEECTTTTSCHHHHHHHHHHHHHHHHHTSCCEEEEECCCHHHHH
T ss_pred EEEECCCCCCChHHHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHH
Confidence 78999999999875 4566777753 458999999976544
No 319
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=98.30 E-value=1.8e-07 Score=80.64 Aligned_cols=52 Identities=19% Similarity=0.213 Sum_probs=36.7
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHcCCCC--ccccccccccccceEEEECCEeecccC
Q 018394 19 HGRVALIGFPSVGKSTLLTLLTGTHSE--AASYEFTTLTCIPGIIHYNDTKIQLLD 72 (356)
Q Consensus 19 g~~v~LvG~~gaGKSTLln~L~g~~~~--vs~~p~TT~~~~~G~i~~~g~~i~~~D 72 (356)
|..++|+||||||||||+++|++...+ ....+.||+.|..|. ++|.++.+++
T Consensus 5 g~~i~i~GpsGsGKSTL~~~L~~~~~~~~~~~i~~ttr~~~~ge--~~g~~~~~~~ 58 (180)
T 1kgd_A 5 RKTLVLLGAHGVGRRHIKNTLITKHPDRFAYPIPHTTRPPKKDE--ENGKNYYFVS 58 (180)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHCTTTEECCCCEECSCC---C--CBTTTBEECC
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCCccEEEeeeccCCCCCccc--cCCCeeEEeC
Confidence 579999999999999999999987642 244567888887764 3555544444
No 320
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=98.30 E-value=1.3e-07 Score=81.91 Aligned_cols=49 Identities=29% Similarity=0.272 Sum_probs=37.1
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcCCCC--ccccccccccccceEEEECCEeecc
Q 018394 20 GRVALIGFPSVGKSTLLTLLTGTHSE--AASYEFTTLTCIPGIIHYNDTKIQL 70 (356)
Q Consensus 20 ~~v~LvG~~gaGKSTLln~L~g~~~~--vs~~p~TT~~~~~G~i~~~g~~i~~ 70 (356)
..++|+||||||||||+++|+|...+ -.....||+.|..|.+ +|..+..
T Consensus 2 ~ii~l~GpsGaGKsTl~~~L~~~~~~~~~~~~~~~tr~~~~ge~--~g~~~~~ 52 (186)
T 3a00_A 2 RPIVISGPSGTGKSTLLKKLFAEYPDSFGFSVSSTTRTPRAGEV--NGKDYNF 52 (186)
T ss_dssp CCEEEESSSSSSHHHHHHHHHHHCGGGEECCCEEECSCCCTTCC--BTTTBEE
T ss_pred CEEEEECCCCCCHHHHHHHHHhhCCccceEEeeccccCCCCCcc--CCeeeee
Confidence 57999999999999999999998753 2234578888888764 5544443
No 321
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=98.29 E-value=3.6e-08 Score=98.55 Aligned_cols=22 Identities=23% Similarity=0.454 Sum_probs=20.3
Q ss_pred CcEEEEEcCCCCcHHHHHHHHH
Q 018394 19 HGRVALIGFPSVGKSTLLTLLT 40 (356)
Q Consensus 19 g~~v~LvG~~gaGKSTLln~L~ 40 (356)
...|+|+|+||||||||++.|+
T Consensus 101 ~~vI~ivG~~GvGKTTl~~kLA 122 (504)
T 2j37_W 101 QNVIMFVGLQGSGKTTTCSKLA 122 (504)
T ss_dssp -EEEEEECSTTSSHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHH
Confidence 4689999999999999999999
No 322
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=98.28 E-value=1.2e-07 Score=83.07 Aligned_cols=52 Identities=33% Similarity=0.298 Sum_probs=38.2
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHcCCCC--ccccccccccccceEEEECCEeecccC
Q 018394 19 HGRVALIGFPSVGKSTLLTLLTGTHSE--AASYEFTTLTCIPGIIHYNDTKIQLLD 72 (356)
Q Consensus 19 g~~v~LvG~~gaGKSTLln~L~g~~~~--vs~~p~TT~~~~~G~i~~~g~~i~~~D 72 (356)
|..++|+||||||||||+++|+|.... -.+...||+.|..|. ++|.++..++
T Consensus 4 g~~i~lvGpsGaGKSTLl~~L~~~~~~~~~~~v~~ttr~~~~g~--~~g~~~~~~~ 57 (198)
T 1lvg_A 4 PRPVVLSGPSGAGKSTLLKKLFQEHSSIFGFSVSHTTRNPRPGE--EDGKDYYFVT 57 (198)
T ss_dssp -CCEEEECCTTSSHHHHHHHHHHHHTTTEEECCCEECSCCCTTC--CBTTTBEECC
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCchhceeeeeeeccCCCCcc--cCCceEEEcc
Confidence 579999999999999999999997532 123456788888886 4666555444
No 323
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=98.21 E-value=2.1e-07 Score=87.26 Aligned_cols=61 Identities=23% Similarity=0.267 Sum_probs=35.7
Q ss_pred eEEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCC-ccccc-------cccccccceEEEECCEeecccCcccccc
Q 018394 12 FEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSE-AASYE-------FTTLTCIPGIIHYNDTKIQLLDLPGIIE 78 (356)
Q Consensus 12 ~~v~~~~g~~v~LvG~~gaGKSTLln~L~g~~~~-vs~~p-------~TT~~~~~G~i~~~g~~i~~~D~pGl~~ 78 (356)
+++.+ |.+++|+|+||||||||+|+|+|...+ .+.++ .||+... .+...+ ..++|+||+..
T Consensus 168 ~~~~~--G~~~~lvG~sG~GKSTLln~L~g~~~~~~G~I~~~~~~G~~tt~~~~--~~~~~~--g~v~dtpg~~~ 236 (307)
T 1t9h_A 168 IPHFQ--DKTTVFAGQSGVGKSSLLNAISPELGLRTNEISEHLGRGKHTTRHVE--LIHTSG--GLVADTPGFSS 236 (307)
T ss_dssp GGGGT--TSEEEEEESHHHHHHHHHHHHCC-------------------CCCCC--EEEETT--EEEESSCSCSS
T ss_pred HhhcC--CCEEEEECCCCCCHHHHHHHhcccccccccceeeecCCCcccccHHH--HhhcCC--EEEecCCCccc
Confidence 44555 789999999999999999999998754 44444 3555432 233321 24568888753
No 324
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=98.21 E-value=4.8e-07 Score=80.75 Aligned_cols=29 Identities=21% Similarity=0.226 Sum_probs=25.1
Q ss_pred EEecCCcEEEEEcCCCCcHHHHHHHHHcCCC
Q 018394 14 VTKFGHGRVALIGFPSVGKSTLLTLLTGTHS 44 (356)
Q Consensus 14 v~~~~g~~v~LvG~~gaGKSTLln~L~g~~~ 44 (356)
.++ |..++|+||||||||||+++|+|...
T Consensus 13 ~~~--G~ii~l~GpsGsGKSTLlk~L~g~~~ 41 (219)
T 1s96_A 13 MAQ--GTLYIVSAPSGAGKSSLIQALLKTQP 41 (219)
T ss_dssp --C--CCEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred CCC--CcEEEEECCCCCCHHHHHHHHhccCC
Confidence 455 78999999999999999999999875
No 325
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=98.21 E-value=1.3e-07 Score=93.99 Aligned_cols=47 Identities=17% Similarity=0.162 Sum_probs=37.5
Q ss_pred CCCCeEEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCccccccccccccceEEEECCEee
Q 018394 8 AGEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKI 68 (356)
Q Consensus 8 ~~~s~~v~~~~g~~v~LvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i 68 (356)
.+++|++.+ ++++|+|||||||||||++|+|...| ..|.+.++|.++
T Consensus 21 ~~vsl~i~~---e~~~liG~nGsGKSTLl~~l~Gl~~p-----------~~G~I~~~g~~~ 67 (483)
T 3euj_A 21 FARTFDFDE---LVTTLSGGNGAGKSTTMAGFVTALIP-----------DLTLLNFRNTTE 67 (483)
T ss_dssp EEEEEECCS---SEEEEECCTTSSHHHHHHHHHHHHCC-----------CTTTCCCCCTTS
T ss_pred cceEEEEcc---ceEEEECCCCCcHHHHHHHHhcCCCC-----------CCCEEEECCEEc
Confidence 367788777 49999999999999999999998765 556666666544
No 326
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=98.20 E-value=2.7e-07 Score=81.71 Aligned_cols=30 Identities=20% Similarity=0.219 Sum_probs=25.9
Q ss_pred EEEecCCcEEEEEcCCCCcHHHHHHHHHcCCC
Q 018394 13 EVTKFGHGRVALIGFPSVGKSTLLTLLTGTHS 44 (356)
Q Consensus 13 ~v~~~~g~~v~LvG~~gaGKSTLln~L~g~~~ 44 (356)
.+.+ |..++|+|+||||||||++.|++...
T Consensus 19 gi~~--G~~~~i~G~~GsGKTtl~~~l~~~~~ 48 (235)
T 2w0m_A 19 GIPQ--GFFIALTGEPGTGKTIFSLHFIAKGL 48 (235)
T ss_dssp SEET--TCEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCcC--CCEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 3666 78999999999999999999997653
No 327
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=98.19 E-value=1.5e-06 Score=83.01 Aligned_cols=31 Identities=19% Similarity=0.166 Sum_probs=27.6
Q ss_pred CeEEEecCCcEEEEEcCCCCcHHHHHHHHHcCC
Q 018394 11 GFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTH 43 (356)
Q Consensus 11 s~~v~~~~g~~v~LvG~~gaGKSTLln~L~g~~ 43 (356)
++.+++ |.+++|+|+||||||||++.|++..
T Consensus 125 ~ggi~~--G~i~~I~G~~GsGKTTL~~~l~~~~ 155 (349)
T 1pzn_A 125 GGGIET--QAITEVFGEFGSGKTQLAHTLAVMV 155 (349)
T ss_dssp TSSEES--SEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred cCCCCC--CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 355777 7899999999999999999999976
No 328
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=98.18 E-value=4.6e-07 Score=96.33 Aligned_cols=66 Identities=14% Similarity=0.223 Sum_probs=52.8
Q ss_pred HHHHHHccC---ccccccCcccccceecccee-----------eeecCCCCCCCHHHHHHHHH---Hhc-ccCcEEEEcc
Q 018394 117 TKELEAVGL---RLNKRPPQIYFKKKKTGGIS-----------FNSTLPLTHVDEKLCYQILH---EYK-IHNAEVLFRE 178 (356)
Q Consensus 117 ~~~L~~~~i---~l~~~~~~lS~g~~qr~~ia-----------l~~DEp~~~LD~~~~~~il~---~l~-~~~~~i~~th 178 (356)
.+.|..+|+ .+++++.+||+||+||+.|| +++||||++||+.....+++ .+. .++|+|+++|
T Consensus 445 ~~~L~~vgL~~l~l~r~~~~LSGGe~QRv~LAraL~~~p~~~lllLDEPT~gLD~~~~~~l~~~L~~L~~~G~TvivVtH 524 (916)
T 3pih_A 445 LEFLVDVGLEYLTLSRSATTLSGGESQRIRLATQIGSGLTGVIYVLDEPTIGLHPRDTERLIKTLKKLRDLGNTVIVVEH 524 (916)
T ss_dssp HHHHHTTTCTTCBTTSBGGGCCHHHHHHHHHHHHHHTTCCSCEEEEECTTTTCCGGGHHHHHHHHHHTTTTTCEEEEECC
T ss_pred HHHHHHcCCccccccCCcccCCHHHHHHHHHHHHHhhCCCCcEEEEECCccCCCHHHHHHHHHHHHHHHhcCCEEEEEeC
Confidence 455667787 36889999999999999988 88999999999987655554 444 3569999999
Q ss_pred CCCH
Q 018394 179 DATV 182 (356)
Q Consensus 179 d~~~ 182 (356)
|.+.
T Consensus 525 d~~~ 528 (916)
T 3pih_A 525 DEEV 528 (916)
T ss_dssp CHHH
T ss_pred CHHH
Confidence 9643
No 329
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=98.18 E-value=6e-07 Score=76.97 Aligned_cols=31 Identities=23% Similarity=0.343 Sum_probs=25.9
Q ss_pred eEEEecCCcEEEEEcCCCCcHHHHHHHHHcCCC
Q 018394 12 FEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHS 44 (356)
Q Consensus 12 ~~v~~~~g~~v~LvG~~gaGKSTLln~L~g~~~ 44 (356)
|.+.. +..++|+||||+|||||+++|++...
T Consensus 33 ~~~~~--g~~~~l~G~~G~GKTtL~~~i~~~~~ 63 (180)
T 3ec2_A 33 FNPEE--GKGLTFVGSPGVGKTHLAVATLKAIY 63 (180)
T ss_dssp CCGGG--CCEEEECCSSSSSHHHHHHHHHHHHH
T ss_pred ccccC--CCEEEEECCCCCCHHHHHHHHHHHHH
Confidence 34444 67999999999999999999998753
No 330
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=98.15 E-value=4.1e-07 Score=96.56 Aligned_cols=66 Identities=12% Similarity=0.183 Sum_probs=53.4
Q ss_pred HHHHHccC---ccccccCcccccceecccee-----------eeecCCCCCCCHHHHHHHH---HHhc-ccCcEEEEccC
Q 018394 118 KELEAVGL---RLNKRPPQIYFKKKKTGGIS-----------FNSTLPLTHVDEKLCYQIL---HEYK-IHNAEVLFRED 179 (356)
Q Consensus 118 ~~L~~~~i---~l~~~~~~lS~g~~qr~~ia-----------l~~DEp~~~LD~~~~~~il---~~l~-~~~~~i~~thd 179 (356)
+.|..+|+ .+++.+.+||+||+||+.|| +++||||++||+.....++ +.++ .++|+|+++||
T Consensus 486 ~~L~~vGL~~l~ldR~~~tLSGGEkQRV~LA~aL~~~~~~~llILDEPTagLdp~~~~~L~~~L~~Lr~~G~TVIvVeHd 565 (972)
T 2r6f_A 486 GFLQNVGLDYLTLSRSAGTLSGGEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQRDNDRLIATLKSMRDLGNTLIVVEHD 565 (972)
T ss_dssp HHHHHHTCTTSBSSSBGGGCCHHHHHHHHHHHHHTTCCCSCEEEEECTTTTCCGGGHHHHHHHHHHHHTTTCEEEEECCC
T ss_pred HHhhhCCCCccccCCccccCCHHHHHHHHHHHHHhhCCCCCEEEEeCcccCCCHHHHHHHHHHHHHHHhCCCEEEEEecC
Confidence 34777888 36899999999999999987 8899999999998755554 4554 46799999999
Q ss_pred CCHH
Q 018394 180 ATVD 183 (356)
Q Consensus 180 ~~~~ 183 (356)
....
T Consensus 566 l~~i 569 (972)
T 2r6f_A 566 EDTM 569 (972)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 7543
No 331
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=98.14 E-value=6.3e-07 Score=95.45 Aligned_cols=64 Identities=13% Similarity=0.200 Sum_probs=52.5
Q ss_pred HHHHccC---ccccccCcccccceecccee-----------eeecCCCCCCCHHHHHHHHH---Hhc-ccCcEEEEccCC
Q 018394 119 ELEAVGL---RLNKRPPQIYFKKKKTGGIS-----------FNSTLPLTHVDEKLCYQILH---EYK-IHNAEVLFREDA 180 (356)
Q Consensus 119 ~L~~~~i---~l~~~~~~lS~g~~qr~~ia-----------l~~DEp~~~LD~~~~~~il~---~l~-~~~~~i~~thd~ 180 (356)
.|..+|+ .+++.+.+||+||+||+.|| +++||||++||+.....+++ .++ .++|+|+++||.
T Consensus 504 ~L~~vGL~~l~l~r~~~tLSGGEkQRV~LA~aL~~~~~~~llILDEPTagLdp~~~~~L~~~L~~Lr~~G~TVIvVeHdl 583 (993)
T 2ygr_A 504 FLLDVGLEYLSLSRAAATLSGGEAQRIRLATQIGSGLVGVLYVLDEPSIGLHQRDNRRLIETLTRLRDLGNTLIVVEHDE 583 (993)
T ss_dssp HHHHHTGGGSCTTCBGGGCCHHHHHHHHHHHHHTTCCCSCEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCH
T ss_pred HHhhCCCCccccCCCcccCCHHHHHHHHHHHHHhhCCCCcEEEEeCcccCCCHHHHHHHHHHHHHHHHcCCEEEEECCCH
Confidence 4677788 36899999999999999887 88999999999988665554 444 467999999997
Q ss_pred CH
Q 018394 181 TV 182 (356)
Q Consensus 181 ~~ 182 (356)
..
T Consensus 584 ~~ 585 (993)
T 2ygr_A 584 DT 585 (993)
T ss_dssp HH
T ss_pred HH
Confidence 54
No 332
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=98.14 E-value=1e-06 Score=82.36 Aligned_cols=27 Identities=26% Similarity=0.326 Sum_probs=25.3
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHcCCCC
Q 018394 19 HGRVALIGFPSVGKSTLLTLLTGTHSE 45 (356)
Q Consensus 19 g~~v~LvG~~gaGKSTLln~L~g~~~~ 45 (356)
+.+++|+|+||||||||+|+|+|...+
T Consensus 169 geiv~l~G~sG~GKSTll~~l~g~~~~ 195 (301)
T 1u0l_A 169 GKISTMAGLSGVGKSSLLNAINPGLKL 195 (301)
T ss_dssp SSEEEEECSTTSSHHHHHHHHSTTCCC
T ss_pred CCeEEEECCCCCcHHHHHHHhcccccc
Confidence 679999999999999999999999865
No 333
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=98.13 E-value=3.5e-07 Score=87.81 Aligned_cols=46 Identities=20% Similarity=0.122 Sum_probs=39.3
Q ss_pred CCCCeEEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCccccccccccccceEEEECCE
Q 018394 8 AGEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDT 66 (356)
Q Consensus 8 ~~~s~~v~~~~g~~v~LvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~ 66 (356)
.+++|.+.+ |..++|+|+||||||||+|+|+|...+ ..|.+.++|.
T Consensus 166 ~~l~~~i~~--G~~i~ivG~sGsGKSTll~~l~~~~~~-----------~~g~I~ie~~ 211 (361)
T 2gza_A 166 SFLRRAVQL--ERVIVVAGETGSGKTTLMKALMQEIPF-----------DQRLITIEDV 211 (361)
T ss_dssp HHHHHHHHT--TCCEEEEESSSSCHHHHHHHHHTTSCT-----------TSCEEEEESS
T ss_pred HHHHHHHhc--CCEEEEECCCCCCHHHHHHHHHhcCCC-----------CceEEEECCc
Confidence 345667777 789999999999999999999999766 7899998864
No 334
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=98.11 E-value=1.1e-06 Score=76.53 Aligned_cols=31 Identities=16% Similarity=0.182 Sum_probs=24.9
Q ss_pred CeEEEecCCcEEEEEcCCCCcHHHHHHHHHcCC
Q 018394 11 GFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTH 43 (356)
Q Consensus 11 s~~v~~~~g~~v~LvG~~gaGKSTLln~L~g~~ 43 (356)
|+++.+ |.+++|+||||||||||+++|+|..
T Consensus 1 s~~m~~--g~ii~l~Gp~GsGKSTl~~~L~~~~ 31 (205)
T 3tr0_A 1 SNAMNK--ANLFIISAPSGAGKTSLVRALVKAL 31 (205)
T ss_dssp ----CC--CCEEEEECCTTSCHHHHHHHHHHHS
T ss_pred CCcCCC--CcEEEEECcCCCCHHHHHHHHHhhC
Confidence 355666 7899999999999999999999974
No 335
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=98.11 E-value=1.7e-06 Score=74.45 Aligned_cols=37 Identities=24% Similarity=0.363 Sum_probs=31.5
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHcCCCCccccccccccccceEEEECCEee
Q 018394 19 HGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKI 68 (356)
Q Consensus 19 g~~v~LvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i 68 (356)
|..++|+|+||||||||+++|++. + ..|.+.+++.++
T Consensus 9 g~~i~l~G~~GsGKSTl~~~La~~--~-----------~~g~i~i~~d~~ 45 (191)
T 1zp6_A 9 GNILLLSGHPGSGKSTIAEALANL--P-----------GVPKVHFHSDDL 45 (191)
T ss_dssp TEEEEEEECTTSCHHHHHHHHHTC--S-----------SSCEEEECTTHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHhc--c-----------CCCeEEEcccch
Confidence 689999999999999999999997 3 467788877554
No 336
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=98.11 E-value=7.1e-07 Score=87.28 Aligned_cols=40 Identities=25% Similarity=0.184 Sum_probs=33.6
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHcCCCCccccccccccccceEEEECCEeec
Q 018394 19 HGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQ 69 (356)
Q Consensus 19 g~~v~LvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~ 69 (356)
+..++|+|||||||||||++|+|...+ ..|.|.+.+.++.
T Consensus 167 ggii~I~GpnGSGKTTlL~allg~l~~-----------~~g~I~~~ed~ie 206 (418)
T 1p9r_A 167 HGIILVTGPTGSGKSTTLYAGLQELNS-----------SERNILTVEDPIE 206 (418)
T ss_dssp SEEEEEECSTTSCHHHHHHHHHHHHCC-----------TTSCEEEEESSCC
T ss_pred CCeEEEECCCCCCHHHHHHHHHhhcCC-----------CCCEEEEecccch
Confidence 579999999999999999999998655 5787877776654
No 337
>3q5d_A Atlastin-1; G protein, GTPase, GDP/GTP binding, hydrolase; HET: GDP; 2.70A {Homo sapiens} PDB: 3q5e_A* 3qnu_A* 3qof_A*
Probab=98.10 E-value=1.6e-06 Score=85.30 Aligned_cols=59 Identities=20% Similarity=0.231 Sum_probs=44.8
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcC---------------CCCccccccccccccceEEEEC-----------CEeecccCc
Q 018394 20 GRVALIGFPSVGKSTLLTLLTGT---------------HSEAASYEFTTLTCIPGIIHYN-----------DTKIQLLDL 73 (356)
Q Consensus 20 ~~v~LvG~~gaGKSTLln~L~g~---------------~~~vs~~p~TT~~~~~G~i~~~-----------g~~i~~~D~ 73 (356)
..|+|+|++++|||||||.|.|. ...+-....||+..+.|...+. ...+.++||
T Consensus 68 ~vVsV~G~~~~GKStLLN~llg~~~~~~~~~wl~~~~~~~~~f~~~~t~~~~T~GIw~~~~p~~~~~~~~~~~~vvllDT 147 (447)
T 3q5d_A 68 VAVSVAGAFRKGKSFLMDFMLRYMYNQESVDWVGDYNEPLTGFSWRGGSERETTGIQIWSEIFLINKPDGKKVAVLLMDT 147 (447)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHHHCCSTTTSSCCTTSBCCSSCSCCSSCCCCCEEEEESSCEEEECSSSCEEEEEEEEE
T ss_pred EEEEEECCCCCcHHHHHHHHhhhcccccccccccccccccceecCCCCCCCceeEEEEecCccccccCCCCcceEEEEcC
Confidence 47999999999999999999974 1122223348888899987774 246888999
Q ss_pred ccccc
Q 018394 74 PGIIE 78 (356)
Q Consensus 74 pGl~~ 78 (356)
+|+..
T Consensus 148 eG~~~ 152 (447)
T 3q5d_A 148 QGTFD 152 (447)
T ss_dssp ECCCS
T ss_pred Ccccc
Confidence 99853
No 338
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=98.10 E-value=1.9e-08 Score=98.93 Aligned_cols=31 Identities=23% Similarity=0.322 Sum_probs=24.3
Q ss_pred eEEEecCCcEEEEEcCCCCcHHHHHHHHHcC
Q 018394 12 FEVTKFGHGRVALIGFPSVGKSTLLTLLTGT 42 (356)
Q Consensus 12 ~~v~~~~g~~v~LvG~~gaGKSTLln~L~g~ 42 (356)
|.+..+....|+|+|+|||||||+.+.|++.
T Consensus 92 ~~~~~~~~~vI~ivG~~GvGKTTla~~La~~ 122 (432)
T 2v3c_C 92 LELNPKKQNVILLVGIQGSGKTTTAAKLARY 122 (432)
T ss_dssp CCCCSSSCCCEEEECCSSSSTTHHHHHHHHH
T ss_pred ccccCCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 3334322368999999999999999999974
No 339
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=98.05 E-value=6.6e-07 Score=88.80 Aligned_cols=47 Identities=15% Similarity=0.122 Sum_probs=40.1
Q ss_pred CCCCeEEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCccccccccccccceEEEECCEe
Q 018394 8 AGEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTK 67 (356)
Q Consensus 8 ~~~s~~v~~~~g~~v~LvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~ 67 (356)
.+++|++.+ |.+++|+|+||||||||+++|+|...+ ..|.+.+.+.+
T Consensus 284 ~~Isl~i~~--GeVI~LVGpNGSGKTTLl~~LAgll~~-----------~~G~V~l~g~D 330 (503)
T 2yhs_A 284 EPLNVEGKA--PFVILMVGVNGVGKTTTIGKLARQFEQ-----------QGKSVMLAAGD 330 (503)
T ss_dssp CCCCCCSCT--TEEEEEECCTTSSHHHHHHHHHHHHHH-----------TTCCEEEECCC
T ss_pred CCceeeccC--CeEEEEECCCcccHHHHHHHHHHHhhh-----------cCCeEEEecCc
Confidence 578888777 789999999999999999999998654 67888886654
No 340
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=98.02 E-value=1.9e-06 Score=75.86 Aligned_cols=54 Identities=19% Similarity=0.037 Sum_probs=40.6
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHcCCC--CccccccccccccceEEEECCEeecccCcc
Q 018394 19 HGRVALIGFPSVGKSTLLTLLTGTHS--EAASYEFTTLTCIPGIIHYNDTKIQLLDLP 74 (356)
Q Consensus 19 g~~v~LvG~~gaGKSTLln~L~g~~~--~vs~~p~TT~~~~~G~i~~~g~~i~~~D~p 74 (356)
|..++|+||||||||||++.|++... .....+.||+.|..|. .+|.++.+++..
T Consensus 8 g~~i~l~GpsGsGKsTl~~~L~~~~~~~~~~~~~~~tr~~~~~e--~~g~~y~~~~~~ 63 (208)
T 3tau_A 8 GLLIVLSGPSGVGKGTVREAVFKDPETSFDYSISMTTRLPREGE--QDGVDYYFRSRE 63 (208)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHSTTCCCEECCCEESSCCCTTC--CBTTTBEECCHH
T ss_pred CcEEEEECcCCCCHHHHHHHHHhhCCCcEEEEEecccccCcCcc--cCCceeEEecHH
Confidence 68999999999999999999999874 3445577888887774 345555444433
No 341
>4fn5_A EF-G 1, elongation factor G 1; translation, translation-antibiotic compl; HET: 0UO; 2.90A {Pseudomonas aeruginosa}
Probab=98.01 E-value=2.2e-06 Score=89.37 Aligned_cols=99 Identities=14% Similarity=0.249 Sum_probs=59.5
Q ss_pred cEEEEEcCCCCcHHHHHHHHH---cCCC---C------cccc------ccccccccceEEEEC-------CEeecccCcc
Q 018394 20 GRVALIGFPSVGKSTLLTLLT---GTHS---E------AASY------EFTTLTCIPGIIHYN-------DTKIQLLDLP 74 (356)
Q Consensus 20 ~~v~LvG~~gaGKSTLln~L~---g~~~---~------vs~~------p~TT~~~~~G~i~~~-------g~~i~~~D~p 74 (356)
..|||+|...+|||||.-+|. |... . +.++ -|.|+....-++.|. +..|.++|||
T Consensus 14 RNi~IiaHvd~GKTTL~d~LL~~~g~i~~~g~v~~~~~~~D~~~~E~eRGITI~s~~~s~~~~~~~~~~~~~~iNlIDTP 93 (709)
T 4fn5_A 14 RNIGICAHVDAGKTTTTERVLFYTGVNHKLGEVHDGAATTDWMVQEQERGITITSAAVTTFWKGSRGQYDNYRVNVIDTP 93 (709)
T ss_dssp EEEEEECCSSSCHHHHHHHHHHHHHHHHHC------------------------CCEEEEEECCTTSCSCCEEEEEECCC
T ss_pred eEEEEEcCCCCCHHHHHHHHHHhcCCCCcCceecCCCccCCChHHHHHcCCeEEeeeEEEEeccCcCCCCCEEEEEEeCC
Confidence 579999999999999998875 3211 1 1221 255666666666664 4678999999
Q ss_pred ccccccccCccccccccccccchhHHHHHHhcCChHH-HHHHHHHHHHHccC
Q 018394 75 GIIEGASEGKGRGRQVIAVSKSSDIVLMVLDASKSEG-HRQILTKELEAVGL 125 (356)
Q Consensus 75 Gl~~~~~~~~~~~~~~~~~~~~~d~i~~v~d~~~~~~-~~~~i~~~L~~~~i 125 (356)
|-.... .+....++-+|..++|+|+..... +.+.+.+.+...++
T Consensus 94 GHvDF~-------~Ev~~aLr~~DgavlvVDaveGV~~qT~~v~~~a~~~~l 138 (709)
T 4fn5_A 94 GHVDFT-------IEVERSLRVLDGAVVVFCGTSGVEPQSETVWRQANKYGV 138 (709)
T ss_dssp SCTTCH-------HHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHHHHHHTC
T ss_pred CCcccH-------HHHHHHHHHhCeEEEEEECCCCCchhHHHHHHHHHHcCC
Confidence 965422 234445566777778888765433 34455555555555
No 342
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=97.95 E-value=1.4e-05 Score=74.39 Aligned_cols=44 Identities=14% Similarity=-0.032 Sum_probs=34.5
Q ss_pred CCCCeEEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCccccccccccccceEEEECCE
Q 018394 8 AGEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDT 66 (356)
Q Consensus 8 ~~~s~~v~~~~g~~v~LvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~ 66 (356)
.+++|+ + +.+++++|+||+||||++..|++...+ ..|.+.+.+.
T Consensus 91 ~~i~~~--~--~~~i~i~g~~G~GKTT~~~~la~~~~~-----------~~~~v~l~~~ 134 (295)
T 1ls1_A 91 RLPVLK--D--RNLWFLVGLQGSGKTTTAAKLALYYKG-----------KGRRPLLVAA 134 (295)
T ss_dssp CCCCCC--S--SEEEEEECCTTTTHHHHHHHHHHHHHH-----------TTCCEEEEEC
T ss_pred ceeecC--C--CeEEEEECCCCCCHHHHHHHHHHHHHH-----------cCCeEEEecC
Confidence 466776 4 689999999999999999999998654 4566665544
No 343
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=97.95 E-value=2.3e-06 Score=80.14 Aligned_cols=41 Identities=17% Similarity=0.188 Sum_probs=35.7
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHcCCCCccccccccccccceEEEECCEeec
Q 018394 18 GHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQ 69 (356)
Q Consensus 18 ~g~~v~LvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~ 69 (356)
.+.+++|+||||||||||+++|+|...+ ..|.+.+.|.++.
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll~~-----------~~g~V~l~g~D~~ 141 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYYQN-----------LGKKVMFCAGDTF 141 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHHHT-----------TTCCEEEECCCCS
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHh-----------cCCEEEEEeecCC
Confidence 3689999999999999999999999766 6889998887653
No 344
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=97.93 E-value=2e-06 Score=75.69 Aligned_cols=42 Identities=29% Similarity=0.285 Sum_probs=32.5
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHcCCCCccccccccccccceEEEECCEee
Q 018394 19 HGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKI 68 (356)
Q Consensus 19 g~~v~LvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i 68 (356)
|.+++|+|+||||||||+++|+|...+. | +..|.+.++|..+
T Consensus 22 g~~v~I~G~sGsGKSTl~~~l~~~~~~~----g----~~~g~v~~d~~~~ 63 (208)
T 3c8u_A 22 RQLVALSGAPGSGKSTLSNPLAAALSAQ----G----LPAEVVPMDGFHL 63 (208)
T ss_dssp CEEEEEECCTTSCTHHHHHHHHHHHHHT----T----CCEEEEESGGGBC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHhhc----C----CceEEEecCCCcC
Confidence 7899999999999999999999986431 1 2467777666543
No 345
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=97.81 E-value=4.1e-06 Score=79.29 Aligned_cols=41 Identities=15% Similarity=0.113 Sum_probs=35.4
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHcCCCCccccccccccccceEEEECCEeec
Q 018394 18 GHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQ 69 (356)
Q Consensus 18 ~g~~v~LvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~ 69 (356)
.+.+++|+|+||||||||++.|+|...+ ..|.+.+.|.++.
T Consensus 128 ~g~vi~lvG~nGaGKTTll~~Lag~l~~-----------~~g~V~l~g~D~~ 168 (328)
T 3e70_C 128 KPYVIMFVGFNGSGKTTTIAKLANWLKN-----------HGFSVVIAASDTF 168 (328)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHH-----------TTCCEEEEEECCS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHh-----------cCCEEEEEeeccc
Confidence 3789999999999999999999998755 6888888877653
No 346
>3kta_B Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xew_Y 1xex_B*
Probab=97.81 E-value=4.7e-06 Score=71.61 Aligned_cols=52 Identities=12% Similarity=0.054 Sum_probs=40.9
Q ss_pred cccCcccccceecccee-------------eeecCCCCCCCHHHHHHHHH---HhcccCcEEEEccCC
Q 018394 129 KRPPQIYFKKKKTGGIS-------------FNSTLPLTHVDEKLCYQILH---EYKIHNAEVLFREDA 180 (356)
Q Consensus 129 ~~~~~lS~g~~qr~~ia-------------l~~DEp~~~LD~~~~~~il~---~l~~~~~~i~~thd~ 180 (356)
+.+..||+|++|++++| +++|||+++||+.....+.+ .+....+++++||+.
T Consensus 60 ~~~~~LSgGekqr~ala~~la~~~~~~~~~llLDEp~a~LD~~~~~~~~~~l~~~~~~~~~ivith~~ 127 (173)
T 3kta_B 60 KRIEAMSGGEKALTALAFVFAIQKFKPAPFYLFDEIDAHLDDANVKRVADLIKESSKESQFIVITLRD 127 (173)
T ss_dssp CCGGGCCHHHHHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHTTTSEEEEECSCH
T ss_pred cccccCCHHHHHHHHHHHHHHhcccCCCCEEEECCCccCCCHHHHHHHHHHHHHhccCCEEEEEEecH
Confidence 45678999999998876 78899999999988655544 444456889999984
No 347
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=97.80 E-value=2.7e-06 Score=80.56 Aligned_cols=133 Identities=13% Similarity=0.177 Sum_probs=62.3
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcCCCCccccccccccccceEEEECCEeecccCcccccccc-ccCcccccccccccc-ch
Q 018394 20 GRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGA-SEGKGRGRQVIAVSK-SS 97 (356)
Q Consensus 20 ~~v~LvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~~D~pGl~~~~-~~~~~~~~~~~~~~~-~~ 97 (356)
..++|+||||+|||||+++|++.... ...+..|.+..++.++ ..+.... ...+....+.-.... ..
T Consensus 52 ~~~ll~Gp~G~GKTTLa~~ia~~l~~-------~~~~~sg~~~~~~~~l-----~~~~~~~~~~~v~~iDE~~~l~~~~~ 119 (334)
T 1in4_A 52 DHVLLAGPPGLGKTTLAHIIASELQT-------NIHVTSGPVLVKQGDM-----AAILTSLERGDVLFIDEIHRLNKAVE 119 (334)
T ss_dssp CCEEEESSTTSSHHHHHHHHHHHHTC-------CEEEEETTTCCSHHHH-----HHHHHHCCTTCEEEEETGGGCCHHHH
T ss_pred CeEEEECCCCCcHHHHHHHHHHHhCC-------CEEEEechHhcCHHHH-----HHHHHHccCCCEEEEcchhhcCHHHH
Confidence 57999999999999999999987511 0011222222222111 1110000 011111122111111 12
Q ss_pred hHHHHHHhcCC------hHHHHHHHHHHHHHccC-ccccccCcccccceeccceeeeecCCCCCCCHHHHHHHHHHhc
Q 018394 98 DIVLMVLDASK------SEGHRQILTKELEAVGL-RLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYK 168 (356)
Q Consensus 98 d~i~~v~d~~~------~~~~~~~i~~~L~~~~i-~l~~~~~~lS~g~~qr~~ial~~DEp~~~LD~~~~~~il~~l~ 168 (356)
+++...+.... .......+...+..+++ ....++..||+++++|.+++.-+|-+ +.+.+.++++...
T Consensus 120 e~L~~~~~~~~~~i~~~~~~~~~~i~~~l~~~~li~at~~~~~Ls~~l~sR~~l~~~Ld~~----~~~~l~~iL~~~~ 193 (334)
T 1in4_A 120 ELLYSAIEDFQIDIMIGKGPSAKSIRIDIQPFTLVGATTRSGLLSSPLRSRFGIILELDFY----TVKELKEIIKRAA 193 (334)
T ss_dssp HHHHHHHHTSCCCC---------------CCCEEEEEESCGGGSCHHHHTTCSEEEECCCC----CHHHHHHHHHHHH
T ss_pred HHHHHHHHhcccceeeccCcccccccccCCCeEEEEecCCcccCCHHHHHhcCceeeCCCC----CHHHHHHHHHHHH
Confidence 23322222111 01112233444444555 45667789999999999887666543 4566666666543
No 348
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=97.79 E-value=1.1e-05 Score=70.11 Aligned_cols=30 Identities=27% Similarity=0.214 Sum_probs=25.4
Q ss_pred EEEecCCcEEEEEcCCCCcHHHHHHHHHcCCC
Q 018394 13 EVTKFGHGRVALIGFPSVGKSTLLTLLTGTHS 44 (356)
Q Consensus 13 ~v~~~~g~~v~LvG~~gaGKSTLln~L~g~~~ 44 (356)
++.+ |..++|+|+||||||||+++|++...
T Consensus 2 ~i~~--g~~i~l~G~~GsGKSTl~~~L~~~~~ 31 (207)
T 2j41_A 2 DNEK--GLLIVLSGPSGVGKGTVRKRIFEDPS 31 (207)
T ss_dssp --CC--CCEEEEECSTTSCHHHHHHHHHHCTT
T ss_pred CCCC--CCEEEEECCCCCCHHHHHHHHHHhhC
Confidence 4556 78999999999999999999999863
No 349
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=97.78 E-value=3.8e-06 Score=84.15 Aligned_cols=45 Identities=16% Similarity=0.169 Sum_probs=36.3
Q ss_pred CCeEEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCccccccccccccceEEEECCEe
Q 018394 10 EGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTK 67 (356)
Q Consensus 10 ~s~~v~~~~g~~v~LvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~ 67 (356)
+++.+.. |..++|+|+||||||||+|+|+|...+ ..|.+.++|..
T Consensus 253 l~~~v~~--g~~i~I~GptGSGKTTlL~aL~~~i~~-----------~~giitied~~ 297 (511)
T 2oap_1 253 LWLAIEH--KFSAIVVGETASGKTTTLNAIMMFIPP-----------DAKVVSIEDTR 297 (511)
T ss_dssp HHHHHHT--TCCEEEEESTTSSHHHHHHHHGGGSCT-----------TCCEEEEESSC
T ss_pred HHHHHhC--CCEEEEECCCCCCHHHHHHHHHhhCCC-----------CCCEEEEcCcc
Confidence 3444555 678999999999999999999998865 67888887653
No 350
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=97.77 E-value=8.3e-06 Score=76.36 Aligned_cols=34 Identities=24% Similarity=0.179 Sum_probs=29.8
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHcCCC--CccccccccccccceEEEE
Q 018394 19 HGRVALIGFPSVGKSTLLTLLTGTHS--EAASYEFTTLTCIPGIIHY 63 (356)
Q Consensus 19 g~~v~LvG~~gaGKSTLln~L~g~~~--~vs~~p~TT~~~~~G~i~~ 63 (356)
+.+|||+|+||||||||+++|+|... + ..|.+.+
T Consensus 80 g~iigI~G~~GsGKSTl~~~L~~~l~~~~-----------~~G~i~v 115 (308)
T 1sq5_A 80 PYIISIAGSVAVGKSTTARVLQALLSRWP-----------EHRRVEL 115 (308)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHHHTTST-----------TCCCEEE
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHhhCC-----------CCCeEEE
Confidence 68999999999999999999999754 4 6787777
No 351
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.77 E-value=3.4e-05 Score=72.89 Aligned_cols=37 Identities=16% Similarity=0.060 Sum_probs=24.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHc-CCCCccccccccccccceEEEECCEee
Q 018394 21 RVALIGFPSVGKSTLLTLLTG-THSEAASYEFTTLTCIPGIIHYNDTKI 68 (356)
Q Consensus 21 ~v~LvG~~gaGKSTLln~L~g-~~~~vs~~p~TT~~~~~G~i~~~g~~i 68 (356)
.+.|.||||+|||||+++|++ ...+ ..|.+.++|.++
T Consensus 38 ~~ll~Gp~G~GKTtl~~~la~~l~~~-----------~~g~i~~~~~~~ 75 (354)
T 1sxj_E 38 HLLLYGPNGTGKKTRCMALLESIFGP-----------GVYRLKIDVRQF 75 (354)
T ss_dssp CEEEECSTTSSHHHHHHTHHHHHSCT-----------TCCC--------
T ss_pred eEEEECCCCCCHHHHHHHHHHHHcCC-----------CCCeEEecceee
Confidence 499999999999999999999 4444 566677666543
No 352
>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12
Probab=97.71 E-value=8.9e-07 Score=79.47 Aligned_cols=38 Identities=21% Similarity=0.195 Sum_probs=27.8
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcCCCCccccccccccccceEEEECCEee
Q 018394 20 GRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKI 68 (356)
Q Consensus 20 ~~v~LvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i 68 (356)
.+++|+|||||||||||++|+|...+ ..|.|.++|.++
T Consensus 28 ~~~~i~GpnGsGKSTll~~i~g~~~~-----------~~G~i~~~g~~~ 65 (227)
T 1qhl_A 28 LVTTLSGGNGAGKSTTMAAFVTALIP-----------DLTLLHFRNTTE 65 (227)
T ss_dssp HHHHHHSCCSHHHHHHHHHHHHHHSC-----------CTTTC-------
T ss_pred cEEEEECCCCCCHHHHHHHHhccccc-----------CCCeEEECCEEc
Confidence 47899999999999999999999766 678888888765
No 353
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=97.69 E-value=1.3e-05 Score=68.99 Aligned_cols=23 Identities=30% Similarity=0.280 Sum_probs=21.2
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHc
Q 018394 19 HGRVALIGFPSVGKSTLLTLLTG 41 (356)
Q Consensus 19 g~~v~LvG~~gaGKSTLln~L~g 41 (356)
|..++|+|+||||||||+++|++
T Consensus 2 g~ii~l~G~~GaGKSTl~~~L~~ 24 (189)
T 2bdt_A 2 KKLYIITGPAGVGKSTTCKRLAA 24 (189)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCcHHHHHHHHhc
Confidence 35899999999999999999986
No 354
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=97.67 E-value=1.9e-05 Score=68.70 Aligned_cols=34 Identities=24% Similarity=0.272 Sum_probs=23.8
Q ss_pred CCCCeEEEecCCcEEEEEcCCCCcHHHHHHHHHcCC
Q 018394 8 AGEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTH 43 (356)
Q Consensus 8 ~~~s~~v~~~~g~~v~LvG~~gaGKSTLln~L~g~~ 43 (356)
.+++|.+.+ +..|+|+|+|||||||+.+.|++..
T Consensus 16 ~~~~~~~~~--~~~i~l~G~~GsGKsTl~~~La~~l 49 (199)
T 3vaa_A 16 ENLYFQSNA--MVRIFLTGYMGAGKTTLGKAFARKL 49 (199)
T ss_dssp --------C--CCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CceeEecCC--CCEEEEEcCCCCCHHHHHHHHHHHc
Confidence 589999988 7899999999999999999998653
No 355
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=97.67 E-value=1e-05 Score=70.28 Aligned_cols=54 Identities=26% Similarity=0.235 Sum_probs=41.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCC--CccccccccccccceEEEECCEeecccCcccc
Q 018394 21 RVALIGFPSVGKSTLLTLLTGTHS--EAASYEFTTLTCIPGIIHYNDTKIQLLDLPGI 76 (356)
Q Consensus 21 ~v~LvG~~gaGKSTLln~L~g~~~--~vs~~p~TT~~~~~G~i~~~g~~i~~~D~pGl 76 (356)
-|+|+||+|||||||++.|....+ ..-..+.|||.|-+|.+ +|.+..+++...+
T Consensus 3 pIVi~GPSG~GK~Tl~~~L~~~~~~~~~~svs~TTR~pR~gE~--~G~dY~Fvs~~eF 58 (186)
T 1ex7_A 3 PIVISGPSGTGKSTLLKKLFAEYPDSFGFSVSSTTRTPRAGEV--NGKDYNFVSVDEF 58 (186)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHCTTTEEECCCEECSCCCTTCC--BTTTBEECCHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHhCCCCeEEEEEEeccCCCCCCc--CCceeEeecHHHH
Confidence 478999999999999999986543 23467899999999964 6777777764433
No 356
>4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans}
Probab=97.66 E-value=1.7e-05 Score=79.47 Aligned_cols=66 Identities=6% Similarity=-0.101 Sum_probs=49.0
Q ss_pred ccCcc-cccceecccee-----------eeecCCCCCCCHHHHH---HHHHHhcccCcEEEEccCCCHHHHHHHHhcccc
Q 018394 130 RPPQI-YFKKKKTGGIS-----------FNSTLPLTHVDEKLCY---QILHEYKIHNAEVLFREDATVDDLIDVIEGNRK 194 (356)
Q Consensus 130 ~~~~l-S~g~~qr~~ia-----------l~~DEp~~~LD~~~~~---~il~~l~~~~~~i~~thd~~~~~~~~~i~~~~~ 194 (356)
++..| |+|++||+.+| +++||||++||+.... ++|+.+..+.++|++||+..+...
T Consensus 393 ~~~~l~SgG~~qrv~la~~l~~~~~~~~lilDEp~~gld~~~~~~i~~~l~~~~~~~~vi~itH~~~~~~~--------- 463 (517)
T 4ad8_A 393 PLSDVASGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAEQLSRLADTRQVLVVTHLAQIAAR--------- 463 (517)
T ss_dssp BSSSSSCSSHHHHHHHHHHHHHCCCSSEEEECSCSSSCCTHHHHHHHHHHHHHHHHSEEEEECCCHHHHHH---------
T ss_pred cHHhcCCHHHHHHHHHHHHHHhCCCCCEEEEeCCcCCCCHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHh---------
Confidence 34567 99999999887 7889999999988744 455555556799999999654332
Q ss_pred ccceEEEeecC
Q 018394 195 YMKCVYVYNKI 205 (356)
Q Consensus 195 ~~p~i~v~NK~ 205 (356)
+..++++.|.
T Consensus 464 -~d~~~~~~~~ 473 (517)
T 4ad8_A 464 -AHHHYKVEKQ 473 (517)
T ss_dssp -SSEEEEEECC
T ss_pred -CCEEEEEecc
Confidence 3567777664
No 357
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=97.60 E-value=2.5e-05 Score=66.67 Aligned_cols=34 Identities=18% Similarity=0.096 Sum_probs=27.7
Q ss_pred CCCCeEEEecCCcEEEEEcCCCCcHHHHHHHHHcCCC
Q 018394 8 AGEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHS 44 (356)
Q Consensus 8 ~~~s~~v~~~~g~~v~LvG~~gaGKSTLln~L~g~~~ 44 (356)
.++++++.+ + ..+|+|+||||||||+.+|.+...
T Consensus 18 ~~~~~~~~~--g-~~~i~G~NGsGKStll~ai~~~l~ 51 (182)
T 3kta_A 18 KKVVIPFSK--G-FTAIVGANGSGKSNIGDAILFVLG 51 (182)
T ss_dssp SCEEEECCS--S-EEEEEECTTSSHHHHHHHHHHHTT
T ss_pred ccEEEecCC--C-cEEEECCCCCCHHHHHHHHHHHHc
Confidence 455666665 5 899999999999999999987653
No 358
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=97.59 E-value=1.5e-05 Score=69.74 Aligned_cols=53 Identities=21% Similarity=0.123 Sum_probs=37.5
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHcCCC--CccccccccccccceEEEECCEeecccCc
Q 018394 19 HGRVALIGFPSVGKSTLLTLLTGTHS--EAASYEFTTLTCIPGIIHYNDTKIQLLDL 73 (356)
Q Consensus 19 g~~v~LvG~~gaGKSTLln~L~g~~~--~vs~~p~TT~~~~~G~i~~~g~~i~~~D~ 73 (356)
+..++|+|+||||||||.+.|..... .....+.|||.+..|.+ +|.++.+++.
T Consensus 12 ~~~i~l~G~sGsGKsTl~~~L~~~~~~~~~~~~~~ttR~~~~~e~--~g~~~~~~~~ 66 (204)
T 2qor_A 12 IPPLVVCGPSGVGKGTLIKKVLSEFPSRFRFSISCTTRNKREKET--NGVDYYFVDK 66 (204)
T ss_dssp CCCEEEECCTTSCHHHHHHHHHHHCTTTEEECCEEECSCCCTTCC--BTTTEEECCH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhCccceeeeeeecCCCCCCCCC--CCcceeeCCH
Confidence 67999999999999999999987552 12234678888876654 3544444443
No 359
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=97.56 E-value=9e-06 Score=79.78 Aligned_cols=23 Identities=22% Similarity=0.365 Sum_probs=21.0
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHc
Q 018394 19 HGRVALIGFPSVGKSTLLTLLTG 41 (356)
Q Consensus 19 g~~v~LvG~~gaGKSTLln~L~g 41 (356)
...|+++|+|||||||++..|+.
T Consensus 100 p~vIlivG~~G~GKTTt~~kLA~ 122 (443)
T 3dm5_A 100 PTILLMVGIQGSGKTTTVAKLAR 122 (443)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEECcCCCCHHHHHHHHHH
Confidence 46999999999999999999984
No 360
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=97.52 E-value=4.3e-05 Score=68.72 Aligned_cols=27 Identities=26% Similarity=0.393 Sum_probs=24.4
Q ss_pred CcEEEEEcCCCCcHHHHHHHHH---cCCCC
Q 018394 19 HGRVALIGFPSVGKSTLLTLLT---GTHSE 45 (356)
Q Consensus 19 g~~v~LvG~~gaGKSTLln~L~---g~~~~ 45 (356)
+.+++|+|+||||||||+++|+ |...+
T Consensus 27 ~~~i~l~G~~GsGKSTl~k~La~~lg~~~~ 56 (246)
T 2bbw_A 27 LLRAVILGPPGSGKGTVCQRIAQNFGLQHL 56 (246)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHCCCCE
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHhCCeEe
Confidence 4799999999999999999999 88654
No 361
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=97.51 E-value=4.5e-05 Score=66.40 Aligned_cols=24 Identities=21% Similarity=0.372 Sum_probs=22.7
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHcC
Q 018394 19 HGRVALIGFPSVGKSTLLTLLTGT 42 (356)
Q Consensus 19 g~~v~LvG~~gaGKSTLln~L~g~ 42 (356)
+..++|+|+||||||||+++|++.
T Consensus 29 g~~i~l~G~~GsGKSTl~~~L~~~ 52 (200)
T 4eun_A 29 TRHVVVMGVSGSGKTTIAHGVADE 52 (200)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHh
Confidence 689999999999999999999986
No 362
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=97.50 E-value=2e-05 Score=72.56 Aligned_cols=31 Identities=26% Similarity=0.357 Sum_probs=26.4
Q ss_pred CCCeEEEecCCcEEEEEcCCCCcHHHHHHHHHcCC
Q 018394 9 GEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTH 43 (356)
Q Consensus 9 ~~s~~v~~~~g~~v~LvG~~gaGKSTLln~L~g~~ 43 (356)
++++.+.+ | ++|+||||||||||+++|+|..
T Consensus 38 ~~~l~~~~--G--vlL~Gp~GtGKTtLakala~~~ 68 (274)
T 2x8a_A 38 ALGLVTPA--G--VLLAGPPGCGKTLLAKAVANES 68 (274)
T ss_dssp HTTCCCCS--E--EEEESSTTSCHHHHHHHHHHHT
T ss_pred HcCCCCCC--e--EEEECCCCCcHHHHHHHHHHHc
Confidence 35666666 4 9999999999999999999975
No 363
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=97.47 E-value=1.4e-05 Score=72.47 Aligned_cols=27 Identities=22% Similarity=0.154 Sum_probs=24.1
Q ss_pred CcEEEEEcCCCCcHHHHHHHHH---cCCCC
Q 018394 19 HGRVALIGFPSVGKSTLLTLLT---GTHSE 45 (356)
Q Consensus 19 g~~v~LvG~~gaGKSTLln~L~---g~~~~ 45 (356)
+.+|+|+|+||||||||+++|+ |...+
T Consensus 27 g~~I~I~G~~GsGKSTl~k~La~~Lg~~~~ 56 (252)
T 4e22_A 27 APVITVDGPSGAGKGTLCKALAESLNWRLL 56 (252)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHHTTCEEE
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhcCCCcC
Confidence 6799999999999999999999 76544
No 364
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=97.46 E-value=4.1e-05 Score=73.20 Aligned_cols=37 Identities=30% Similarity=0.230 Sum_probs=29.9
Q ss_pred CCCeEEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCC
Q 018394 9 GEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSE 45 (356)
Q Consensus 9 ~~s~~v~~~~g~~v~LvG~~gaGKSTLln~L~g~~~~ 45 (356)
.+++.|.+.=+..++|+|+||||||||+++|+|...+
T Consensus 160 ~v~~~v~~~lg~k~~IvG~nGsGKSTLlk~L~gl~~~ 196 (365)
T 1lw7_A 160 FIPKEARPFFAKTVAILGGESSGKSVLVNKLAAVFNT 196 (365)
T ss_dssp GSCTTTGGGTCEEEEEECCTTSHHHHHHHHHHHHTTC
T ss_pred hCCHHHHHhhhCeEEEECCCCCCHHHHHHHHHHHhCC
Confidence 3555555533569999999999999999999999765
No 365
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=97.41 E-value=6.2e-05 Score=63.44 Aligned_cols=25 Identities=28% Similarity=0.288 Sum_probs=22.8
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHcCC
Q 018394 19 HGRVALIGFPSVGKSTLLTLLTGTH 43 (356)
Q Consensus 19 g~~v~LvG~~gaGKSTLln~L~g~~ 43 (356)
+..|+|+|+||||||||.++|++..
T Consensus 4 ~~~i~l~G~~GsGKSTl~~~La~~l 28 (173)
T 1kag_A 4 KRNIFLVGPMGAGKSTIGRQLAQQL 28 (173)
T ss_dssp CCCEEEECCTTSCHHHHHHHHHHHT
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHh
Confidence 4689999999999999999999864
No 366
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=97.36 E-value=8.6e-05 Score=64.57 Aligned_cols=25 Identities=28% Similarity=0.272 Sum_probs=23.4
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHcCC
Q 018394 19 HGRVALIGFPSVGKSTLLTLLTGTH 43 (356)
Q Consensus 19 g~~v~LvG~~gaGKSTLln~L~g~~ 43 (356)
|..|+|+|+||||||||.++|++..
T Consensus 25 g~~i~l~G~sGsGKSTl~~~La~~l 49 (200)
T 3uie_A 25 GCVIWVTGLSGSGKSTLACALNQML 49 (200)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 7899999999999999999999875
No 367
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=97.32 E-value=0.0001 Score=62.34 Aligned_cols=24 Identities=25% Similarity=0.378 Sum_probs=22.3
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHcC
Q 018394 19 HGRVALIGFPSVGKSTLLTLLTGT 42 (356)
Q Consensus 19 g~~v~LvG~~gaGKSTLln~L~g~ 42 (356)
+..++|+|+||||||||.++|++.
T Consensus 8 g~~i~l~G~~GsGKSTl~~~l~~~ 31 (175)
T 1knq_A 8 HHIYVLMGVSGSGKSAVASEVAHQ 31 (175)
T ss_dssp SEEEEEECSTTSCHHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHh
Confidence 679999999999999999999875
No 368
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=97.24 E-value=0.00013 Score=69.90 Aligned_cols=67 Identities=9% Similarity=0.054 Sum_probs=47.8
Q ss_pred cccCcccccceecccee----------------eeecCCCCCCCHHHHHHHHHHhc---ccCcEEEEccCCCHHHHHHHH
Q 018394 129 KRPPQIYFKKKKTGGIS----------------FNSTLPLTHVDEKLCYQILHEYK---IHNAEVLFREDATVDDLIDVI 189 (356)
Q Consensus 129 ~~~~~lS~g~~qr~~ia----------------l~~DEp~~~LD~~~~~~il~~l~---~~~~~i~~thd~~~~~~~~~i 189 (356)
.++..+|+||+|++.+| +++||||++||+.....+++.+. ...+++++||+.....
T Consensus 276 ~~~~~lS~G~~~~~~lal~la~a~~l~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~vi~~th~~~~~~----- 350 (371)
T 3auy_A 276 LTIDNLSGGEQIAVALSLRLAIANALIGNRVECIILDEPTVYLDENRRAKLAEIFRKVKSIPQMIIITHHRELED----- 350 (371)
T ss_dssp ECGGGSCHHHHHHHHHHHHHHHHHHHHSSCCSEEEEESTTTTCCHHHHHHHHHHHHHCCSCSEEEEEESCGGGGG-----
T ss_pred cchHhcCHHHHHHHHHHHHHHHHHHHhcCCCCeEEEeCCCCcCCHHHHHHHHHHHHHhccCCeEEEEEChHHHHh-----
Confidence 34568999999987431 88999999999998666655543 3348999999964322
Q ss_pred hccccccceEEEeecC
Q 018394 190 EGNRKYMKCVYVYNKI 205 (356)
Q Consensus 190 ~~~~~~~p~i~v~NK~ 205 (356)
..+.+++++|.
T Consensus 351 -----~~d~~~~l~k~ 361 (371)
T 3auy_A 351 -----VADVIINVKKD 361 (371)
T ss_dssp -----GCSEEEEEEES
T ss_pred -----hCCEEEEEEec
Confidence 23566777663
No 369
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=97.24 E-value=5.6e-05 Score=75.51 Aligned_cols=32 Identities=13% Similarity=0.058 Sum_probs=27.3
Q ss_pred CCCCeEEEecCCcEEEEEcCCCCcHHHHHHHHHc
Q 018394 8 AGEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTG 41 (356)
Q Consensus 8 ~~~s~~v~~~~g~~v~LvG~~gaGKSTLln~L~g 41 (356)
..+.+++.+ +..+.|+|.+||||||++|+|..
T Consensus 158 ~pv~ldL~~--~pHlLIaG~TGSGKSt~L~~li~ 189 (512)
T 2ius_A 158 EPVVADLAK--MPHLLVAGTTGSGASVGVNAMIL 189 (512)
T ss_dssp CEEEEEGGG--SCSEEEECCTTSSHHHHHHHHHH
T ss_pred CEEEEEccc--CceEEEECCCCCCHHHHHHHHHH
Confidence 346777777 67999999999999999999875
No 370
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=97.18 E-value=0.00013 Score=65.07 Aligned_cols=24 Identities=25% Similarity=0.160 Sum_probs=22.8
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHcC
Q 018394 19 HGRVALIGFPSVGKSTLLTLLTGT 42 (356)
Q Consensus 19 g~~v~LvG~~gaGKSTLln~L~g~ 42 (356)
|..|+|.|++|||||||+++|++.
T Consensus 20 g~~i~i~G~~GsGKSTl~~~L~~~ 43 (230)
T 2vp4_A 20 PFTVLIEGNIGSGKTTYLNHFEKY 43 (230)
T ss_dssp CEEEEEECSTTSCHHHHHHTTGGG
T ss_pred ceEEEEECCCCCCHHHHHHHHHhc
Confidence 789999999999999999999986
No 371
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=97.14 E-value=0.00014 Score=60.62 Aligned_cols=26 Identities=23% Similarity=0.174 Sum_probs=23.8
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHcCCC
Q 018394 19 HGRVALIGFPSVGKSTLLTLLTGTHS 44 (356)
Q Consensus 19 g~~v~LvG~~gaGKSTLln~L~g~~~ 44 (356)
+..++|+|+||+|||||+++|++...
T Consensus 36 g~~~~l~G~~G~GKTtL~~~i~~~~~ 61 (149)
T 2kjq_A 36 GQFIYVWGEEGAGKSHLLQAWVAQAL 61 (149)
T ss_dssp CSEEEEESSSTTTTCHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHH
Confidence 67999999999999999999998753
No 372
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=97.12 E-value=0.00018 Score=61.66 Aligned_cols=32 Identities=19% Similarity=0.385 Sum_probs=25.0
Q ss_pred CCCeEEEecCCcEEEEEcCCCCcHHHHHHHHHcC
Q 018394 9 GEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGT 42 (356)
Q Consensus 9 ~~s~~v~~~~g~~v~LvG~~gaGKSTLln~L~g~ 42 (356)
++|+...+ +..|+|+|+|||||||+.+.|...
T Consensus 2 ~~~~~~~~--~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 2 PGSMEQPK--GINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp ----CCCS--SCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CcCcCCCC--CCEEEEECCCCCCHHHHHHHHHHh
Confidence 45677666 679999999999999999999865
No 373
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=97.10 E-value=0.00011 Score=66.10 Aligned_cols=31 Identities=35% Similarity=0.548 Sum_probs=25.8
Q ss_pred CCCeEEEecCCcEEEEEcCCCCcHHHHHHHHHcCC
Q 018394 9 GEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTH 43 (356)
Q Consensus 9 ~~s~~v~~~~g~~v~LvG~~gaGKSTLln~L~g~~ 43 (356)
++++.+++ | ++|+||||+|||||+++|++..
T Consensus 43 ~~~~~~~~--g--~ll~G~~G~GKTtl~~~i~~~~ 73 (254)
T 1ixz_A 43 EMGARIPK--G--VLLVGPPGVGKTHLARAVAGEA 73 (254)
T ss_dssp HTTCCCCS--E--EEEECCTTSSHHHHHHHHHHHT
T ss_pred HcCCCCCC--e--EEEECCCCCCHHHHHHHHHHHh
Confidence 34566666 4 9999999999999999999864
No 374
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=97.09 E-value=0.00024 Score=62.48 Aligned_cols=25 Identities=20% Similarity=0.234 Sum_probs=22.3
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHcCC
Q 018394 19 HGRVALIGFPSVGKSTLLTLLTGTH 43 (356)
Q Consensus 19 g~~v~LvG~~gaGKSTLln~L~g~~ 43 (356)
+..|+|+|+|||||||+.+.|.+..
T Consensus 5 ~~~i~i~G~~GsGKSTl~~~L~~~~ 29 (227)
T 1cke_A 5 APVITIDGPSGAGKGTLCKAMAEAL 29 (227)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 3589999999999999999998753
No 375
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=97.08 E-value=0.00025 Score=61.67 Aligned_cols=25 Identities=28% Similarity=0.320 Sum_probs=23.3
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHcCC
Q 018394 19 HGRVALIGFPSVGKSTLLTLLTGTH 43 (356)
Q Consensus 19 g~~v~LvG~~gaGKSTLln~L~g~~ 43 (356)
+.+++|+|+||||||||+++|.+..
T Consensus 22 ~~~i~i~G~~GsGKstl~~~l~~~~ 46 (201)
T 1rz3_A 22 RLVLGIDGLSRSGKTTLANQLSQTL 46 (201)
T ss_dssp SEEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 6899999999999999999999865
No 376
>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}
Probab=97.06 E-value=0.00019 Score=68.57 Aligned_cols=31 Identities=19% Similarity=0.171 Sum_probs=26.7
Q ss_pred CCCCeEEEecCCcEEEEEcCCCCcHHHHHHHHHc
Q 018394 8 AGEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTG 41 (356)
Q Consensus 8 ~~~s~~v~~~~g~~v~LvG~~gaGKSTLln~L~g 41 (356)
.+++|++.+ | +++|+|||||||||||++|.+
T Consensus 18 ~~~~~~~~~--g-~~~i~G~nG~GKttll~ai~~ 48 (359)
T 2o5v_A 18 APGTLNFPE--G-VTGIYGENGAGKTNLLEAAYL 48 (359)
T ss_dssp CSEEEECCS--E-EEEEECCTTSSHHHHHHHHHH
T ss_pred eeeEEEEcC--C-eEEEECCCCCChhHHHHHHHH
Confidence 456777766 6 999999999999999999986
No 377
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=97.06 E-value=9.1e-05 Score=71.30 Aligned_cols=31 Identities=23% Similarity=0.188 Sum_probs=27.0
Q ss_pred CCeEEEecCCcEEEEEcCCCCcHHHHHHHHHcC
Q 018394 10 EGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGT 42 (356)
Q Consensus 10 ~s~~v~~~~g~~v~LvG~~gaGKSTLln~L~g~ 42 (356)
+++.+.+ +..++|+||||||||||+++|++.
T Consensus 162 ~~~~i~~--~~~i~l~G~~GsGKSTl~~~l~~~ 192 (377)
T 1svm_A 162 MVYNIPK--KRYWLFKGPIDSGKTTLAAALLEL 192 (377)
T ss_dssp HHHCCTT--CCEEEEECSTTSSHHHHHHHHHHH
T ss_pred cccccCC--CCEEEEECCCCCCHHHHHHHHHhh
Confidence 4566677 779999999999999999999985
No 378
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=97.05 E-value=0.00031 Score=62.30 Aligned_cols=27 Identities=19% Similarity=0.212 Sum_probs=24.4
Q ss_pred EEecCCcEEEEEcCCCCcHHHHHHHHHcC
Q 018394 14 VTKFGHGRVALIGFPSVGKSTLLTLLTGT 42 (356)
Q Consensus 14 v~~~~g~~v~LvG~~gaGKSTLln~L~g~ 42 (356)
+++ |..++|+|+||||||||++.|++.
T Consensus 21 i~~--G~~~~i~G~~GsGKTtl~~~l~~~ 47 (243)
T 1n0w_A 21 IET--GSITEMFGEFRTGKTQICHTLAVT 47 (243)
T ss_dssp EET--TSEEEEECCTTSSHHHHHHHHHHH
T ss_pred CcC--CeEEEEECCCCCcHHHHHHHHHHH
Confidence 556 789999999999999999999984
No 379
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=97.02 E-value=0.00034 Score=60.80 Aligned_cols=22 Identities=36% Similarity=0.400 Sum_probs=20.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q 018394 21 RVALIGFPSVGKSTLLTLLTGT 42 (356)
Q Consensus 21 ~v~LvG~~gaGKSTLln~L~g~ 42 (356)
.|+|+|+|||||||+.+.|++.
T Consensus 4 ~i~l~G~~GsGKST~~~~La~l 25 (206)
T 1jjv_A 4 IVGLTGGIGSGKTTIANLFTDL 25 (206)
T ss_dssp EEEEECSTTSCHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHHHC
Confidence 7999999999999999999984
No 380
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=97.02 E-value=0.00015 Score=66.29 Aligned_cols=31 Identities=35% Similarity=0.548 Sum_probs=25.9
Q ss_pred CCCeEEEecCCcEEEEEcCCCCcHHHHHHHHHcCC
Q 018394 9 GEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTH 43 (356)
Q Consensus 9 ~~s~~v~~~~g~~v~LvG~~gaGKSTLln~L~g~~ 43 (356)
++++.+++ | ++|+||||||||||+++|++..
T Consensus 67 ~~~~~~~~--g--vll~Gp~GtGKTtl~~~i~~~~ 97 (278)
T 1iy2_A 67 EMGARIPK--G--VLLVGPPGVGKTHLARAVAGEA 97 (278)
T ss_dssp HTTCCCCC--E--EEEECCTTSSHHHHHHHHHHHT
T ss_pred HcCCCCCC--e--EEEECCCcChHHHHHHHHHHHc
Confidence 35566666 4 9999999999999999999875
No 381
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=97.01 E-value=0.00036 Score=60.74 Aligned_cols=25 Identities=24% Similarity=0.239 Sum_probs=23.3
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHcCC
Q 018394 19 HGRVALIGFPSVGKSTLLTLLTGTH 43 (356)
Q Consensus 19 g~~v~LvG~~gaGKSTLln~L~g~~ 43 (356)
+..|+|+|+||||||||.+.|.+..
T Consensus 21 ~~~i~i~G~~GsGKSTl~~~L~~~~ 45 (207)
T 2qt1_A 21 TFIIGISGVTNSGKTTLAKNLQKHL 45 (207)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHTTS
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhc
Confidence 6799999999999999999999874
No 382
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=96.94 E-value=0.00038 Score=60.31 Aligned_cols=22 Identities=32% Similarity=0.465 Sum_probs=20.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q 018394 21 RVALIGFPSVGKSTLLTLLTGT 42 (356)
Q Consensus 21 ~v~LvG~~gaGKSTLln~L~g~ 42 (356)
.|+|+|+|||||||+.+.|++.
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~~ 24 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFREL 24 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHHT
T ss_pred EEEEECCCCcCHHHHHHHHHHC
Confidence 6999999999999999999983
No 383
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=96.94 E-value=0.00028 Score=63.02 Aligned_cols=37 Identities=14% Similarity=0.102 Sum_probs=25.4
Q ss_pred CCCCeEEE-ecCCcEEEEEcCCCCcHHHHHHHHHcCCC
Q 018394 8 AGEGFEVT-KFGHGRVALIGFPSVGKSTLLTLLTGTHS 44 (356)
Q Consensus 8 ~~~s~~v~-~~~g~~v~LvG~~gaGKSTLln~L~g~~~ 44 (356)
.++++.+. ...|..|+|.|+|||||||+++.|.....
T Consensus 14 ~~~~~~~~~~~~g~~i~i~G~~GsGKsT~~~~l~~~l~ 51 (229)
T 4eaq_A 14 GTENLYFQSNAMSAFITFEGPEGSGKTTVINEVYHRLV 51 (229)
T ss_dssp ------CCCCCCCEEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred cCCCeeEeecCCCeEEEEEcCCCCCHHHHHHHHHHHHh
Confidence 35566664 11278999999999999999999997653
No 384
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=96.93 E-value=0.00038 Score=65.44 Aligned_cols=25 Identities=32% Similarity=0.295 Sum_probs=22.7
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcCCC
Q 018394 20 GRVALIGFPSVGKSTLLTLLTGTHS 44 (356)
Q Consensus 20 ~~v~LvG~~gaGKSTLln~L~g~~~ 44 (356)
.++||+|+||||||||+++|.+...
T Consensus 93 ~iigI~GpsGSGKSTl~~~L~~ll~ 117 (321)
T 3tqc_A 93 YIIGIAGSVAVGKSTTSRVLKALLS 117 (321)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred EEEEEECCCCCCHHHHHHHHHHHhc
Confidence 4899999999999999999998754
No 385
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=96.93 E-value=0.00012 Score=68.85 Aligned_cols=36 Identities=22% Similarity=0.290 Sum_probs=30.0
Q ss_pred CCCCeEEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCC
Q 018394 8 AGEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSE 45 (356)
Q Consensus 8 ~~~s~~v~~~~g~~v~LvG~~gaGKSTLln~L~g~~~~ 45 (356)
.+++|.+.+ +.+++|+|+|||||||++..|++...+
T Consensus 96 ~~l~~~~~~--~~vI~ivG~~G~GKTT~~~~LA~~l~~ 131 (320)
T 1zu4_A 96 YRIDFKENR--LNIFMLVGVNGTGKTTSLAKMANYYAE 131 (320)
T ss_dssp CCCCCCTTS--CEEEEEESSTTSSHHHHHHHHHHHHHH
T ss_pred cCccccCCC--CeEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 356776555 789999999999999999999987654
No 386
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=96.87 E-value=0.00017 Score=67.50 Aligned_cols=27 Identities=19% Similarity=0.208 Sum_probs=24.6
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHcCCCC
Q 018394 19 HGRVALIGFPSVGKSTLLTLLTGTHSE 45 (356)
Q Consensus 19 g~~v~LvG~~gaGKSTLln~L~g~~~~ 45 (356)
+.+++|+|+|||||||++..|++...+
T Consensus 104 ~~vi~ivG~~GsGKTTl~~~LA~~l~~ 130 (306)
T 1vma_A 104 PFVIMVVGVNGTGKTTSCGKLAKMFVD 130 (306)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred CeEEEEEcCCCChHHHHHHHHHHHHHh
Confidence 689999999999999999999988654
No 387
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12
Probab=96.87 E-value=0.00037 Score=68.07 Aligned_cols=65 Identities=8% Similarity=-0.077 Sum_probs=47.0
Q ss_pred cCcccccceecccee-------------eeecCCCCCCCHHHHHHHHHHhc---c-cCcEEEEccCCCHHHHHHHHhccc
Q 018394 131 PPQIYFKKKKTGGIS-------------FNSTLPLTHVDEKLCYQILHEYK---I-HNAEVLFREDATVDDLIDVIEGNR 193 (356)
Q Consensus 131 ~~~lS~g~~qr~~ia-------------l~~DEp~~~LD~~~~~~il~~l~---~-~~~~i~~thd~~~~~~~~~i~~~~ 193 (356)
+..+|+||++++.+| +++|||+++||+.....+++.+. . +.+++++||+....+
T Consensus 331 ~~~lS~Gq~~~~~la~~la~~~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~~~ii~th~~~~~~--------- 401 (430)
T 1w1w_A 331 MEYLSGGEKTVAALALLFAINSYQPSPFFVLDEVDAALDITNVQRIAAYIRRHRNPDLQFIVISLKNTMFE--------- 401 (430)
T ss_dssp GGGSCHHHHHHHHHHHHHHHHTSSCCSEEEESSTTTTCCHHHHHHHHHHHHHHCBTTBEEEEECSCHHHHT---------
T ss_pred cccCCcchHHHHHHHHHHHHhcCCCCCEEEeCCCcccCCHHHHHHHHHHHHHHhcCCCEEEEEECCHHHHH---------
Confidence 345999999999877 78899999999998766665554 2 347899999843221
Q ss_pred cccceEEEeecC
Q 018394 194 KYMKCVYVYNKI 205 (356)
Q Consensus 194 ~~~p~i~v~NK~ 205 (356)
....++++.+.
T Consensus 402 -~~d~~~~~~~~ 412 (430)
T 1w1w_A 402 -KSDALVGVYRQ 412 (430)
T ss_dssp -TCSEEEEEEEE
T ss_pred -hCCEEEEEEEe
Confidence 23566666653
No 388
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=96.86 E-value=0.00042 Score=60.42 Aligned_cols=23 Identities=22% Similarity=0.013 Sum_probs=22.1
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHc
Q 018394 19 HGRVALIGFPSVGKSTLLTLLTG 41 (356)
Q Consensus 19 g~~v~LvG~~gaGKSTLln~L~g 41 (356)
|..++|+|+||||||||++.|++
T Consensus 20 G~~~~i~G~~GsGKTtl~~~l~~ 42 (220)
T 2cvh_A 20 GVLTQVYGPYASGKTTLALQTGL 42 (220)
T ss_dssp TSEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHH
Confidence 68999999999999999999998
No 389
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=96.82 E-value=0.00066 Score=56.38 Aligned_cols=21 Identities=38% Similarity=0.507 Sum_probs=19.4
Q ss_pred cEEEEEcCCCCcHHHHHHHHH
Q 018394 20 GRVALIGFPSVGKSTLLTLLT 40 (356)
Q Consensus 20 ~~v~LvG~~gaGKSTLln~L~ 40 (356)
...+|+|||||||||||.+|.
T Consensus 24 g~~~I~G~NGsGKStil~Ai~ 44 (149)
T 1f2t_A 24 GINLIIGQNGSGKSSLLDAIL 44 (149)
T ss_dssp EEEEEECCTTSSHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHH
Confidence 488999999999999999986
No 390
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=96.81 E-value=0.00062 Score=57.76 Aligned_cols=25 Identities=28% Similarity=0.270 Sum_probs=22.9
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHcCC
Q 018394 19 HGRVALIGFPSVGKSTLLTLLTGTH 43 (356)
Q Consensus 19 g~~v~LvG~~gaGKSTLln~L~g~~ 43 (356)
|..|+|+|++||||||+.++|.+..
T Consensus 5 g~~i~l~G~~GsGKST~~~~L~~~l 29 (179)
T 2pez_A 5 GCTVWLTGLSGAGKTTVSMALEEYL 29 (179)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHH
Confidence 6899999999999999999999864
No 391
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12
Probab=96.75 E-value=0.00051 Score=67.05 Aligned_cols=27 Identities=19% Similarity=0.234 Sum_probs=24.1
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHcCCCC
Q 018394 19 HGRVALIGFPSVGKSTLLTLLTGTHSE 45 (356)
Q Consensus 19 g~~v~LvG~~gaGKSTLln~L~g~~~~ 45 (356)
+..++|+|||||||||||++|++...+
T Consensus 26 ~~~~~i~G~nG~GKstll~ai~~~~~~ 52 (430)
T 1w1w_A 26 SNFTSIIGPNGSGKSNMMDAISFVLGV 52 (430)
T ss_dssp CSEEEEECSTTSSHHHHHHHHHHHTTC
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhhcc
Confidence 579999999999999999999987644
No 392
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=96.72 E-value=0.00042 Score=69.95 Aligned_cols=27 Identities=33% Similarity=0.326 Sum_probs=24.9
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHcCCCC
Q 018394 19 HGRVALIGFPSVGKSTLLTLLTGTHSE 45 (356)
Q Consensus 19 g~~v~LvG~~gaGKSTLln~L~g~~~~ 45 (356)
|..++|+|+||||||||+++|++...+
T Consensus 369 G~iI~LiG~sGSGKSTLar~La~~L~~ 395 (552)
T 3cr8_A 369 GFTVFFTGLSGAGKSTLARALAARLME 395 (552)
T ss_dssp CEEEEEEESSCHHHHHHHHHHHHHHHT
T ss_pred ceEEEEECCCCChHHHHHHHHHHhhcc
Confidence 789999999999999999999998654
No 393
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=96.69 E-value=0.00091 Score=55.82 Aligned_cols=22 Identities=27% Similarity=0.149 Sum_probs=20.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q 018394 21 RVALIGFPSVGKSTLLTLLTGT 42 (356)
Q Consensus 21 ~v~LvG~~gaGKSTLln~L~g~ 42 (356)
.|+|+|+|||||||+.+.|...
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~ 24 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKE 24 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999999865
No 394
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=96.67 E-value=0.00075 Score=61.16 Aligned_cols=35 Identities=20% Similarity=0.324 Sum_probs=26.7
Q ss_pred CCCeEEEec-CCcEEEEEcCCCCcHHHHHHHHHcCC
Q 018394 9 GEGFEVTKF-GHGRVALIGFPSVGKSTLLTLLTGTH 43 (356)
Q Consensus 9 ~~s~~v~~~-~g~~v~LvG~~gaGKSTLln~L~g~~ 43 (356)
+++|.+.+. .+..|+|+|+|||||||+.++|++..
T Consensus 37 ~~~~~i~~~l~g~~i~l~G~~GsGKSTl~~~La~~l 72 (250)
T 3nwj_A 37 KKAEEVKPYLNGRSMYLVGMMGSGKTTVGKIMARSL 72 (250)
T ss_dssp HHHHTTHHHHTTCCEEEECSTTSCHHHHHHHHHHHH
T ss_pred hhhhhhhhhcCCCEEEEECCCCCCHHHHHHHHHHhc
Confidence 455555540 03599999999999999999999753
No 395
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=96.66 E-value=0.00092 Score=57.14 Aligned_cols=24 Identities=29% Similarity=0.373 Sum_probs=21.8
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcCC
Q 018394 20 GRVALIGFPSVGKSTLLTLLTGTH 43 (356)
Q Consensus 20 ~~v~LvG~~gaGKSTLln~L~g~~ 43 (356)
..++|+|++|||||||++.|.+..
T Consensus 7 ~~i~i~G~sGsGKTTl~~~l~~~l 30 (174)
T 1np6_A 7 PLLAFAAWSGTGKTTLLKKLIPAL 30 (174)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHH
T ss_pred eEEEEEeCCCCCHHHHHHHHHHhc
Confidence 479999999999999999999764
No 396
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=96.65 E-value=0.00086 Score=56.96 Aligned_cols=23 Identities=30% Similarity=0.408 Sum_probs=21.2
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHc
Q 018394 19 HGRVALIGFPSVGKSTLLTLLTG 41 (356)
Q Consensus 19 g~~v~LvG~~gaGKSTLln~L~g 41 (356)
|..|+|+|+|||||||+.+.|+.
T Consensus 4 g~~I~l~G~~GsGKST~~~~La~ 26 (186)
T 3cm0_A 4 GQAVIFLGPPGAGKGTQASRLAQ 26 (186)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 57899999999999999999985
No 397
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=96.64 E-value=0.00079 Score=58.27 Aligned_cols=23 Identities=22% Similarity=0.482 Sum_probs=21.2
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcC
Q 018394 20 GRVALIGFPSVGKSTLLTLLTGT 42 (356)
Q Consensus 20 ~~v~LvG~~gaGKSTLln~L~g~ 42 (356)
..|+|+|+||||||||.+.|++.
T Consensus 19 ~~I~l~G~~GsGKSTla~~L~~~ 41 (202)
T 3t61_A 19 GSIVVMGVSGSGKSSVGEAIAEA 41 (202)
T ss_dssp SCEEEECSTTSCHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 47999999999999999999865
No 398
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=96.64 E-value=0.001 Score=55.34 Aligned_cols=20 Identities=35% Similarity=0.617 Sum_probs=18.9
Q ss_pred cEEEEEcCCCCcHHHHHHHH
Q 018394 20 GRVALIGFPSVGKSTLLTLL 39 (356)
Q Consensus 20 ~~v~LvG~~gaGKSTLln~L 39 (356)
..|+|+|+|||||||+.+.|
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHH
Confidence 47999999999999999999
No 399
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=96.56 E-value=0.0012 Score=61.24 Aligned_cols=26 Identities=15% Similarity=-0.046 Sum_probs=23.6
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHcCCC
Q 018394 19 HGRVALIGFPSVGKSTLLTLLTGTHS 44 (356)
Q Consensus 19 g~~v~LvG~~gaGKSTLln~L~g~~~ 44 (356)
+.+|+|+|++|||||||.+.|.+...
T Consensus 31 ~~ii~I~G~sGsGKSTla~~L~~~l~ 56 (290)
T 1odf_A 31 PLFIFFSGPQGSGKSFTSIQIYNHLM 56 (290)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhh
Confidence 57999999999999999999998764
No 400
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=96.55 E-value=0.0018 Score=62.77 Aligned_cols=25 Identities=32% Similarity=0.284 Sum_probs=21.5
Q ss_pred EEecCCcEEEEEcCCCCcHHHHHHHHH
Q 018394 14 VTKFGHGRVALIGFPSVGKSTLLTLLT 40 (356)
Q Consensus 14 v~~~~g~~v~LvG~~gaGKSTLln~L~ 40 (356)
+++ |..++|+|+||||||||++.|+
T Consensus 175 I~~--Gei~~I~G~sGsGKTTLl~~la 199 (400)
T 3lda_A 175 VET--GSITELFGEFRTGKSQLCHTLA 199 (400)
T ss_dssp EET--TSEEEEEESTTSSHHHHHHHHH
T ss_pred cCC--CcEEEEEcCCCCChHHHHHHHH
Confidence 455 7899999999999999999554
No 401
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=96.53 E-value=0.0015 Score=55.53 Aligned_cols=24 Identities=29% Similarity=0.421 Sum_probs=21.5
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHcC
Q 018394 19 HGRVALIGFPSVGKSTLLTLLTGT 42 (356)
Q Consensus 19 g~~v~LvG~~gaGKSTLln~L~g~ 42 (356)
+..|+|.|+|||||||+.+.|...
T Consensus 3 ~~~I~i~G~~GsGKsT~~~~L~~~ 26 (192)
T 1kht_A 3 NKVVVVTGVPGVGSTTSSQLAMDN 26 (192)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 468999999999999999999764
No 402
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=96.50 E-value=0.0016 Score=54.90 Aligned_cols=25 Identities=28% Similarity=0.280 Sum_probs=22.1
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHcCC
Q 018394 19 HGRVALIGFPSVGKSTLLTLLTGTH 43 (356)
Q Consensus 19 g~~v~LvG~~gaGKSTLln~L~g~~ 43 (356)
+..|.|+|+|||||||+.+.|....
T Consensus 3 ~~~i~l~G~~GsGKST~a~~La~~l 27 (178)
T 1qhx_A 3 TRMIILNGGSSAGKSGIVRCLQSVL 27 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhc
Confidence 3589999999999999999998754
No 403
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=96.50 E-value=0.0014 Score=55.93 Aligned_cols=25 Identities=36% Similarity=0.376 Sum_probs=23.0
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHcCC
Q 018394 19 HGRVALIGFPSVGKSTLLTLLTGTH 43 (356)
Q Consensus 19 g~~v~LvG~~gaGKSTLln~L~g~~ 43 (356)
+..|+|+|+|||||||+.+.|+...
T Consensus 13 ~~~i~l~G~~GsGKsT~~~~L~~~l 37 (186)
T 2yvu_A 13 GIVVWLTGLPGSGKTTIATRLADLL 37 (186)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 6899999999999999999998764
No 404
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=96.48 E-value=0.0015 Score=56.05 Aligned_cols=22 Identities=27% Similarity=0.477 Sum_probs=20.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q 018394 21 RVALIGFPSVGKSTLLTLLTGT 42 (356)
Q Consensus 21 ~v~LvG~~gaGKSTLln~L~g~ 42 (356)
.|+|+|++||||||+.+.|...
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~ 23 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKK 23 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHHh
Confidence 6899999999999999999875
No 405
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=96.44 E-value=0.00038 Score=64.81 Aligned_cols=46 Identities=20% Similarity=0.370 Sum_probs=33.7
Q ss_pred cceEEEeecCCCCChhh---HHH---Hh-c-CCCEEEeccccccchHHHHHHHH
Q 018394 196 MKCVYVYNKIDVIGIDD---VDK---LA-R-QPNSVVISCNLKLNLDRLLARMW 241 (356)
Q Consensus 196 ~p~i~v~NK~Dl~~~~~---~~~---l~-~-~~~~i~iSa~~~~~l~~L~~~i~ 241 (356)
+|.++|+||+|+.+..+ .+. .+ . ..+++++||++|.|+++|.+.+.
T Consensus 111 ~~~ilV~NK~DL~~~~~v~~~~~~~~~~~~~g~~~~~~SA~~g~gi~~L~~~l~ 164 (302)
T 2yv5_A 111 VEPVIVFNKIDLLNEEEKKELERWISIYRDAGYDVLKVSAKTGEGIDELVDYLE 164 (302)
T ss_dssp CEEEEEECCGGGCCHHHHHHHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHTT
T ss_pred CCEEEEEEcccCCCccccHHHHHHHHHHHHCCCeEEEEECCCCCCHHHHHhhcc
Confidence 58999999999986542 222 22 1 13589999999999999877654
No 406
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=96.42 E-value=0.0017 Score=54.46 Aligned_cols=22 Identities=32% Similarity=0.386 Sum_probs=20.2
Q ss_pred cEEEEEcCCCCcHHHHHHHHHc
Q 018394 20 GRVALIGFPSVGKSTLLTLLTG 41 (356)
Q Consensus 20 ~~v~LvG~~gaGKSTLln~L~g 41 (356)
..|.|.|+|||||||+.+.|..
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 3789999999999999999986
No 407
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=96.37 E-value=0.0019 Score=56.45 Aligned_cols=21 Identities=38% Similarity=0.507 Sum_probs=19.3
Q ss_pred cEEEEEcCCCCcHHHHHHHHH
Q 018394 20 GRVALIGFPSVGKSTLLTLLT 40 (356)
Q Consensus 20 ~~v~LvG~~gaGKSTLln~L~ 40 (356)
...+|+|+|||||||+|.+|.
T Consensus 24 ~~~~I~G~NgsGKStil~ai~ 44 (203)
T 3qks_A 24 GINLIIGQNGSGKSSLLDAIL 44 (203)
T ss_dssp EEEEEECCTTSSHHHHHHHHH
T ss_pred CeEEEEcCCCCCHHHHHHHHH
Confidence 489999999999999999885
No 408
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=96.37 E-value=0.0016 Score=60.52 Aligned_cols=26 Identities=27% Similarity=0.353 Sum_probs=23.9
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHcCCC
Q 018394 19 HGRVALIGFPSVGKSTLLTLLTGTHS 44 (356)
Q Consensus 19 g~~v~LvG~~gaGKSTLln~L~g~~~ 44 (356)
+.+++|+|+|||||||+++.|++...
T Consensus 105 g~vi~lvG~~GsGKTTl~~~LA~~l~ 130 (296)
T 2px0_A 105 SKYIVLFGSTGAGKTTTLAKLAAISM 130 (296)
T ss_dssp SSEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHH
Confidence 67999999999999999999998764
No 409
>2kmm_A Guanosine-3',5'-BIS(diphosphate) 3'- pyrophosphohydrolase; methods development, TGS domain, predominantly beta-sheet structure; NMR {Porphyromonas gingivalis}
Probab=96.33 E-value=0.0055 Score=44.08 Aligned_cols=52 Identities=23% Similarity=0.217 Sum_probs=43.7
Q ss_pred cEEeecCCCCCCHHHHHHHHHHhHhhcCcEeEEeccCCccCCcccCCCceeCCCCeEEEEec
Q 018394 263 PVVLSVDRGGCTVEDFCNHIHRSLVKDVKYVLVWGTSARHYPQHCGLGHVLQDEDVVQIVKK 324 (356)
Q Consensus 263 ~~~~~~~r~g~~v~~~a~~ih~~l~~~f~~a~~wg~s~~~~~~~vg~~~~l~d~Dvv~i~~~ 324 (356)
..-++. |+|+.++++.++..+.+...-|. ..|+.+.++++|++||.|+|+..
T Consensus 12 ~~~~~~---g~T~~dla~~i~~~l~~~~vaa~-------vNg~lvdl~~~L~~~~~Veivt~ 63 (73)
T 2kmm_A 12 IKRLPQ---GATALDFAYSLHSDLGDHCIGAK-------VNHKLVPLSYVLNSGDQVEVLSS 63 (73)
T ss_dssp EEEECT---TCBHHHHHHHHCSHHHHTEEEEE-------ETTEECCTTCBCCSSSBEEEEEC
T ss_pred EEEcCC---CCcHHHHHHHHhhccccceEEEE-------ECCEEeCCCcCcCCCCEEEEEEC
Confidence 456677 99999999999988887654444 47889999999999999999976
No 410
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=96.32 E-value=0.0023 Score=55.06 Aligned_cols=25 Identities=16% Similarity=0.191 Sum_probs=22.8
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHcCC
Q 018394 19 HGRVALIGFPSVGKSTLLTLLTGTH 43 (356)
Q Consensus 19 g~~v~LvG~~gaGKSTLln~L~g~~ 43 (356)
+..|+|.|++||||||+.+.|....
T Consensus 4 ~~~I~l~G~~GsGKsT~~~~L~~~l 28 (204)
T 2v54_A 4 GALIVFEGLDKSGKTTQCMNIMESI 28 (204)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHTS
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 5799999999999999999998764
No 411
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=96.30 E-value=0.0021 Score=54.71 Aligned_cols=24 Identities=29% Similarity=0.457 Sum_probs=21.4
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHcC
Q 018394 19 HGRVALIGFPSVGKSTLLTLLTGT 42 (356)
Q Consensus 19 g~~v~LvG~~gaGKSTLln~L~g~ 42 (356)
+..|.|+|+|||||||+.+.|...
T Consensus 5 ~~~I~l~G~~GsGKST~~~~L~~~ 28 (193)
T 2rhm_A 5 PALIIVTGHPATGKTTLSQALATG 28 (193)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 468999999999999999999753
No 412
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=96.29 E-value=0.0023 Score=55.19 Aligned_cols=25 Identities=32% Similarity=0.267 Sum_probs=22.2
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHcCC
Q 018394 19 HGRVALIGFPSVGKSTLLTLLTGTH 43 (356)
Q Consensus 19 g~~v~LvG~~gaGKSTLln~L~g~~ 43 (356)
+..|+|.|+|||||||+.+.|....
T Consensus 4 ~~~I~i~G~~GsGKsT~~~~L~~~l 28 (213)
T 2plr_A 4 GVLIAFEGIDGSGKSSQATLLKDWI 28 (213)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHH
Confidence 4689999999999999999998643
No 413
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=96.27 E-value=0.0021 Score=56.07 Aligned_cols=26 Identities=31% Similarity=0.259 Sum_probs=23.4
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHcCCC
Q 018394 19 HGRVALIGFPSVGKSTLLTLLTGTHS 44 (356)
Q Consensus 19 g~~v~LvG~~gaGKSTLln~L~g~~~ 44 (356)
+..|+|+|+|||||||+.+.|.+...
T Consensus 25 ~~~i~~~G~~GsGKsT~~~~l~~~l~ 50 (211)
T 1m7g_A 25 GLTIWLTGLSASGKSTLAVELEHQLV 50 (211)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhc
Confidence 67999999999999999999987653
No 414
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=96.25 E-value=0.0023 Score=54.28 Aligned_cols=22 Identities=36% Similarity=0.501 Sum_probs=20.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q 018394 21 RVALIGFPSVGKSTLLTLLTGT 42 (356)
Q Consensus 21 ~v~LvG~~gaGKSTLln~L~g~ 42 (356)
.|+|.|+|||||||+.+.|...
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~~ 24 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKEI 24 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999999864
No 415
>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}
Probab=96.18 E-value=0.0012 Score=63.08 Aligned_cols=50 Identities=12% Similarity=-0.126 Sum_probs=40.4
Q ss_pred ccC-cccccceecccee------------------eeecCCCCCCCHHHHHHHHHHhcc-cCcEEEEccC
Q 018394 130 RPP-QIYFKKKKTGGIS------------------FNSTLPLTHVDEKLCYQILHEYKI-HNAEVLFRED 179 (356)
Q Consensus 130 ~~~-~lS~g~~qr~~ia------------------l~~DEp~~~LD~~~~~~il~~l~~-~~~~i~~thd 179 (356)
++. .+|+||+|++.+| +++||||++||+.....+++.+.. ..++|++||.
T Consensus 261 ~~~~~lS~Gqqq~l~lA~~La~~~l~~~~~~~p~iLLLDEp~s~LD~~~~~~l~~~l~~~~qt~i~~th~ 330 (359)
T 2o5v_A 261 PASDYASRGEGRTVALALRRAELELLREKFGEDPVLLLDDFTAELDPHRRQYLLDLAASVPQAIVTGTEL 330 (359)
T ss_dssp EHHHHCCHHHHHHHHHHHHHHHHHHHHHHHSSCCEEEECCGGGCCCHHHHHHHHHHHHHSSEEEEEESSC
T ss_pred chhhhCCHHHHHHHHHHHHHHHhhhhhhccCCCCEEEEeCccccCCHHHHHHHHHHHHhcCcEEEEEEec
Confidence 444 6999999999876 889999999999987777766653 2588888984
No 416
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=96.18 E-value=0.0024 Score=53.78 Aligned_cols=22 Identities=41% Similarity=0.599 Sum_probs=20.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q 018394 21 RVALIGFPSVGKSTLLTLLTGT 42 (356)
Q Consensus 21 ~v~LvG~~gaGKSTLln~L~g~ 42 (356)
.|+|+|+|||||||+.+.|+..
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~ 27 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKD 27 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHH
Confidence 6899999999999999999864
No 417
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=96.17 E-value=0.003 Score=55.86 Aligned_cols=26 Identities=23% Similarity=0.295 Sum_probs=21.6
Q ss_pred EEecCCcEEEEEcCCCCcHHHHHHHHHc
Q 018394 14 VTKFGHGRVALIGFPSVGKSTLLTLLTG 41 (356)
Q Consensus 14 v~~~~g~~v~LvG~~gaGKSTLln~L~g 41 (356)
+.+ |..++|+|+||||||||+..++.
T Consensus 20 l~~--G~~~~i~G~~GsGKTtl~~~~~~ 45 (247)
T 2dr3_A 20 IPE--RNVVLLSGGPGTGKTIFSQQFLW 45 (247)
T ss_dssp EET--TCEEEEEECTTSSHHHHHHHHHH
T ss_pred CCC--CcEEEEECCCCCCHHHHHHHHHH
Confidence 566 77999999999999999665543
No 418
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=96.16 E-value=0.0028 Score=55.20 Aligned_cols=22 Identities=27% Similarity=0.552 Sum_probs=19.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q 018394 21 RVALIGFPSVGKSTLLTLLTGT 42 (356)
Q Consensus 21 ~v~LvG~~gaGKSTLln~L~g~ 42 (356)
.|+|.|+|||||||+.+.|+..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~ 23 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEK 23 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999999653
No 419
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=96.16 E-value=0.0031 Score=53.44 Aligned_cols=24 Identities=25% Similarity=0.351 Sum_probs=21.2
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHcC
Q 018394 19 HGRVALIGFPSVGKSTLLTLLTGT 42 (356)
Q Consensus 19 g~~v~LvG~~gaGKSTLln~L~g~ 42 (356)
...|.|+|+|||||||+.+.|+..
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~~ 28 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAKL 28 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHH
Confidence 358999999999999999999754
No 420
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=96.14 E-value=0.0029 Score=54.78 Aligned_cols=24 Identities=29% Similarity=0.275 Sum_probs=21.8
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHcC
Q 018394 19 HGRVALIGFPSVGKSTLLTLLTGT 42 (356)
Q Consensus 19 g~~v~LvG~~gaGKSTLln~L~g~ 42 (356)
+..|+|.|++||||||+.+.|...
T Consensus 10 ~~~I~l~G~~GsGKST~~~~L~~~ 33 (212)
T 2wwf_A 10 GKFIVFEGLDRSGKSTQSKLLVEY 33 (212)
T ss_dssp SCEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHH
Confidence 579999999999999999999854
No 421
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=96.13 E-value=0.0031 Score=55.13 Aligned_cols=23 Identities=35% Similarity=0.273 Sum_probs=21.3
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHc
Q 018394 19 HGRVALIGFPSVGKSTLLTLLTG 41 (356)
Q Consensus 19 g~~v~LvG~~gaGKSTLln~L~g 41 (356)
+..|+|.|++||||||+.+.|..
T Consensus 4 ~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 4 RYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999987
No 422
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=96.13 E-value=0.0032 Score=53.46 Aligned_cols=24 Identities=25% Similarity=0.249 Sum_probs=21.1
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHcC
Q 018394 19 HGRVALIGFPSVGKSTLLTLLTGT 42 (356)
Q Consensus 19 g~~v~LvG~~gaGKSTLln~L~g~ 42 (356)
+..|+|.|+|||||||+.+.|...
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~~~ 26 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIVEK 26 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHH
Confidence 468999999999999999998753
No 423
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=96.11 E-value=0.0031 Score=53.75 Aligned_cols=24 Identities=21% Similarity=0.295 Sum_probs=21.5
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHcC
Q 018394 19 HGRVALIGFPSVGKSTLLTLLTGT 42 (356)
Q Consensus 19 g~~v~LvG~~gaGKSTLln~L~g~ 42 (356)
+..|+|+|+|||||||+.+.|+..
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~La~~ 32 (196)
T 2c95_A 9 TNIIFVVGGPGSGKGTQCEKIVQK 32 (196)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHH
Confidence 468999999999999999999853
No 424
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=96.11 E-value=0.0029 Score=56.22 Aligned_cols=24 Identities=29% Similarity=0.360 Sum_probs=22.1
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHcC
Q 018394 19 HGRVALIGFPSVGKSTLLTLLTGT 42 (356)
Q Consensus 19 g~~v~LvG~~gaGKSTLln~L~g~ 42 (356)
+..|+|+|+|||||||+.+.|++.
T Consensus 16 ~~~i~i~G~~gsGKst~~~~l~~~ 39 (236)
T 1q3t_A 16 TIQIAIDGPASSGKSTVAKIIAKD 39 (236)
T ss_dssp CCEEEEECSSCSSHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHH
Confidence 679999999999999999999863
No 425
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=96.10 E-value=0.0031 Score=54.95 Aligned_cols=22 Identities=27% Similarity=0.484 Sum_probs=19.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q 018394 21 RVALIGFPSVGKSTLLTLLTGT 42 (356)
Q Consensus 21 ~v~LvG~~gaGKSTLln~L~g~ 42 (356)
.|+|+|+|||||||+.+.|+..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~ 23 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEK 23 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999999754
No 426
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=96.09 E-value=0.003 Score=53.39 Aligned_cols=24 Identities=38% Similarity=0.469 Sum_probs=21.1
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHcC
Q 018394 19 HGRVALIGFPSVGKSTLLTLLTGT 42 (356)
Q Consensus 19 g~~v~LvG~~gaGKSTLln~L~g~ 42 (356)
+..|.|+|+|||||||+.+.|...
T Consensus 11 ~~~i~i~G~~GsGKst~~~~l~~~ 34 (180)
T 3iij_A 11 LPNILLTGTPGVGKTTLGKELASK 34 (180)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHHH
T ss_pred CCeEEEEeCCCCCHHHHHHHHHHH
Confidence 457999999999999999999843
No 427
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=96.08 E-value=0.0015 Score=63.65 Aligned_cols=34 Identities=18% Similarity=0.090 Sum_probs=28.7
Q ss_pred CCCCeEEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCC
Q 018394 8 AGEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSE 45 (356)
Q Consensus 8 ~~~s~~v~~~~g~~v~LvG~~gaGKSTLln~L~g~~~~ 45 (356)
.+++|. + +.+++++|++||||||++..|++...+
T Consensus 91 ~~i~l~--~--~~vi~i~G~~GsGKTT~~~~LA~~l~~ 124 (425)
T 2ffh_A 91 RLPVLK--D--RNLWFLVGLQGSGKTTTAAKLALYYKG 124 (425)
T ss_dssp CCCCCC--S--SEEEEEECCTTSSHHHHHHHHHHHHHT
T ss_pred ccccCC--C--CeEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 456776 4 689999999999999999999988654
No 428
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=96.07 E-value=0.0015 Score=56.70 Aligned_cols=23 Identities=35% Similarity=0.554 Sum_probs=20.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 018394 21 RVALIGFPSVGKSTLLTLLTGTH 43 (356)
Q Consensus 21 ~v~LvG~~gaGKSTLln~L~g~~ 43 (356)
.|+|.|++||||||+.+.|....
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~l 24 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGAF 24 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHH
Confidence 68999999999999999998754
No 429
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=96.05 E-value=0.0034 Score=54.36 Aligned_cols=24 Identities=29% Similarity=0.274 Sum_probs=21.9
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHcC
Q 018394 19 HGRVALIGFPSVGKSTLLTLLTGT 42 (356)
Q Consensus 19 g~~v~LvG~~gaGKSTLln~L~g~ 42 (356)
+..|+|.|++||||||+.+.|...
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~L~~~ 32 (215)
T 1nn5_A 9 GALIVLEGVDRAGKSTQSRKLVEA 32 (215)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHH
Confidence 579999999999999999999854
No 430
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=96.05 E-value=0.0035 Score=53.58 Aligned_cols=24 Identities=29% Similarity=0.306 Sum_probs=21.5
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHcC
Q 018394 19 HGRVALIGFPSVGKSTLLTLLTGT 42 (356)
Q Consensus 19 g~~v~LvG~~gaGKSTLln~L~g~ 42 (356)
+..|+|.|+|||||||+.+.|...
T Consensus 12 ~~~I~l~G~~GsGKsT~a~~L~~~ 35 (199)
T 2bwj_A 12 CKIIFIIGGPGSGKGTQCEKLVEK 35 (199)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHH
Confidence 468999999999999999999864
No 431
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=96.04 E-value=0.0023 Score=64.47 Aligned_cols=26 Identities=27% Similarity=0.388 Sum_probs=23.6
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHcCCC
Q 018394 19 HGRVALIGFPSVGKSTLLTLLTGTHS 44 (356)
Q Consensus 19 g~~v~LvG~~gaGKSTLln~L~g~~~ 44 (356)
+..++|+||||||||||+++|++...
T Consensus 108 g~~vll~Gp~GtGKTtlar~ia~~l~ 133 (543)
T 3m6a_A 108 GPILCLAGPPGVGKTSLAKSIAKSLG 133 (543)
T ss_dssp SCEEEEESSSSSSHHHHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhcC
Confidence 67999999999999999999998753
No 432
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=96.02 E-value=0.0037 Score=53.34 Aligned_cols=22 Identities=32% Similarity=0.418 Sum_probs=20.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q 018394 21 RVALIGFPSVGKSTLLTLLTGT 42 (356)
Q Consensus 21 ~v~LvG~~gaGKSTLln~L~g~ 42 (356)
.|+|.|++||||||+.+.|...
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~ 23 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQY 23 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999999865
No 433
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=96.01 E-value=0.0041 Score=54.44 Aligned_cols=24 Identities=38% Similarity=0.426 Sum_probs=21.7
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHcC
Q 018394 19 HGRVALIGFPSVGKSTLLTLLTGT 42 (356)
Q Consensus 19 g~~v~LvG~~gaGKSTLln~L~g~ 42 (356)
+..|+|+|+|||||||+.+.|+..
T Consensus 4 ~~~I~l~G~~GsGKsT~a~~La~~ 27 (220)
T 1aky_A 4 SIRMVLIGPPGAGKGTQAPNLQER 27 (220)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHH
Confidence 578999999999999999999754
No 434
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=96.00 E-value=0.0041 Score=53.63 Aligned_cols=24 Identities=42% Similarity=0.540 Sum_probs=21.6
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHcC
Q 018394 19 HGRVALIGFPSVGKSTLLTLLTGT 42 (356)
Q Consensus 19 g~~v~LvG~~gaGKSTLln~L~g~ 42 (356)
+..|+|+|+|||||||+.+.|...
T Consensus 20 ~~~I~l~G~~GsGKST~a~~La~~ 43 (201)
T 2cdn_A 20 HMRVLLLGPPGAGKGTQAVKLAEK 43 (201)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 578999999999999999999754
No 435
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=95.97 E-value=0.0042 Score=51.62 Aligned_cols=23 Identities=48% Similarity=0.635 Sum_probs=20.4
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcC
Q 018394 20 GRVALIGFPSVGKSTLLTLLTGT 42 (356)
Q Consensus 20 ~~v~LvG~~gaGKSTLln~L~g~ 42 (356)
+.|+|.|++||||||+.+.|...
T Consensus 1 m~I~l~G~~GsGKsT~a~~L~~~ 23 (168)
T 2pt5_A 1 MRIYLIGFMCSGKSTVGSLLSRS 23 (168)
T ss_dssp CEEEEESCTTSCHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 36899999999999999999863
No 436
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=95.96 E-value=0.0041 Score=52.78 Aligned_cols=22 Identities=27% Similarity=0.264 Sum_probs=20.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q 018394 21 RVALIGFPSVGKSTLLTLLTGT 42 (356)
Q Consensus 21 ~v~LvG~~gaGKSTLln~L~g~ 42 (356)
.|+|.|++||||||+.+.|...
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~ 23 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEY 23 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999999763
No 437
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=95.95 E-value=0.0069 Score=57.87 Aligned_cols=52 Identities=23% Similarity=0.144 Sum_probs=38.0
Q ss_pred ccceEEEeecCCCCChh----hHHH----Hh-c--C--CCEEEeccccccchHHHHHHHHHHhCc
Q 018394 195 YMKCVYVYNKIDVIGID----DVDK----LA-R--Q--PNSVVISCNLKLNLDRLLARMWEEMGL 246 (356)
Q Consensus 195 ~~p~i~v~NK~Dl~~~~----~~~~----l~-~--~--~~~i~iSa~~~~~l~~L~~~i~~~l~~ 246 (356)
.+|.++|+||+|+...+ .+.+ .. . . .+++++||++|.|+++|.+.+.+.+.-
T Consensus 96 ~~p~ilV~NK~DL~~~~~~~~~~~~~l~~~~~~~g~~~~~v~~iSA~~g~gi~~L~~~l~~~~~~ 160 (368)
T 3h2y_A 96 NNKVLLVGNKADLIPKSVKHDKVKHWMRYSAKQLGLKPEDVFLISAAKGQGIAELADAIEYYRGG 160 (368)
T ss_dssp SSCEEEEEECGGGSCTTSCHHHHHHHHHHHHHHTTCCCSEEEECCTTTCTTHHHHHHHHHHHHTT
T ss_pred CCcEEEEEEChhcCCcccCHHHHHHHHHHHHHHcCCCcccEEEEeCCCCcCHHHHHhhhhhhccc
Confidence 47999999999997542 1211 11 1 2 157899999999999999999876543
No 438
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=95.93 E-value=0.004 Score=53.40 Aligned_cols=24 Identities=29% Similarity=0.259 Sum_probs=21.8
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHcC
Q 018394 19 HGRVALIGFPSVGKSTLLTLLTGT 42 (356)
Q Consensus 19 g~~v~LvG~~gaGKSTLln~L~g~ 42 (356)
...|+|+|++||||||+.+.|...
T Consensus 8 ~~~I~i~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 8 PIIIGITGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHT
T ss_pred ceEEEEECCCCCCHHHHHHHHHHC
Confidence 368999999999999999999875
No 439
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=95.93 E-value=0.0037 Score=56.45 Aligned_cols=22 Identities=14% Similarity=0.179 Sum_probs=20.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q 018394 21 RVALIGFPSVGKSTLLTLLTGT 42 (356)
Q Consensus 21 ~v~LvG~~gaGKSTLln~L~g~ 42 (356)
.++|+|+||||||||-+.|+..
T Consensus 3 li~I~G~~GSGKSTla~~La~~ 24 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQIAQE 24 (253)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHhc
Confidence 6899999999999999999864
No 440
>1cip_A Protein (guanine nucleotide-binding protein alpha-1 subunit); GTPase, hydrolase; HET: GNP; 1.50A {Rattus norvegicus} SCOP: a.66.1.1 c.37.1.8 PDB: 1agr_A* 1bof_A* 1gdd_A* 1gfi_A* 1gia_A* 1gp2_A* 3ffa_A* 3ffb_A* 1gg2_A* 1git_A* 1svs_A* 1svk_A* 2zjz_A* 2zjy_A* 3ums_A* 2pz2_A* 2pz3_A* 1as0_A* 1as2_A* 1as3_A* ...
Probab=95.92 E-value=0.0044 Score=58.94 Aligned_cols=43 Identities=12% Similarity=0.257 Sum_probs=29.2
Q ss_pred eEEEECCEeecccCccccccccccCccccccccccccchhHHHHHHhcCC
Q 018394 59 GIIHYNDTKIQLLDLPGIIEGASEGKGRGRQVIAVSKSSDIVLMVLDASK 108 (356)
Q Consensus 59 G~i~~~g~~i~~~D~pGl~~~~~~~~~~~~~~~~~~~~~d~i~~v~d~~~ 108 (356)
..+.+++..+.++||+|-.... ......+++++.+++|+|.+.
T Consensus 186 ~~~~~~~~~l~iwDt~GQe~~r-------~~w~~yf~~a~~iIfV~dls~ 228 (353)
T 1cip_A 186 THFTFKDLHFKMFDVGGQRSER-------KKWIHCFEGVTAIIFCVALSD 228 (353)
T ss_dssp EEEEETTEEEEEEEECCSGGGG-------GGGGGGCTTCSEEEEEEEGGG
T ss_pred EEEeeCCeeEEEEeCCCchhhh-------HHHHHHHhcCCEEEEEEECcc
Confidence 3466788899999999854321 112234678888888888765
No 441
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=95.91 E-value=0.0043 Score=54.65 Aligned_cols=24 Identities=29% Similarity=0.429 Sum_probs=21.6
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHcC
Q 018394 19 HGRVALIGFPSVGKSTLLTLLTGT 42 (356)
Q Consensus 19 g~~v~LvG~~gaGKSTLln~L~g~ 42 (356)
...|+|+|+|||||||+.+.|+..
T Consensus 7 ~~~I~l~G~~GsGKsT~a~~La~~ 30 (227)
T 1zd8_A 7 LLRAVIMGAPGSGKGTVSSRITTH 30 (227)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHH
Confidence 468999999999999999999854
No 442
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=95.87 E-value=0.0049 Score=55.17 Aligned_cols=24 Identities=29% Similarity=0.189 Sum_probs=21.5
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHcC
Q 018394 19 HGRVALIGFPSVGKSTLLTLLTGT 42 (356)
Q Consensus 19 g~~v~LvG~~gaGKSTLln~L~g~ 42 (356)
...++|.|||||||||+.+.|+..
T Consensus 9 ~~~i~i~G~~GsGKsTla~~la~~ 32 (233)
T 3r20_A 9 SLVVAVDGPAGTGKSSVSRGLARA 32 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 368999999999999999999854
No 443
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=95.87 E-value=0.0026 Score=63.38 Aligned_cols=31 Identities=35% Similarity=0.548 Sum_probs=26.2
Q ss_pred CCCeEEEecCCcEEEEEcCCCCcHHHHHHHHHcCC
Q 018394 9 GEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTH 43 (356)
Q Consensus 9 ~~s~~v~~~~g~~v~LvG~~gaGKSTLln~L~g~~ 43 (356)
++++.+++ | +.|+||||+|||||+++|++..
T Consensus 58 ~lg~~ip~--G--vLL~GppGtGKTtLaraIa~~~ 88 (499)
T 2dhr_A 58 EMGARIPK--G--VLLVGPPGVGKTHLARAVAGEA 88 (499)
T ss_dssp TTSCCCCS--E--EEEECSSSSSHHHHHHHHHHHT
T ss_pred hccCCCCc--e--EEEECCCCCCHHHHHHHHHHHh
Confidence 45666666 4 9999999999999999999864
No 444
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=95.86 E-value=0.0042 Score=52.63 Aligned_cols=23 Identities=35% Similarity=0.560 Sum_probs=20.5
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcC
Q 018394 20 GRVALIGFPSVGKSTLLTLLTGT 42 (356)
Q Consensus 20 ~~v~LvG~~gaGKSTLln~L~g~ 42 (356)
..|+|+|+|||||||+-+.|...
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~ 25 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAKA 25 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 47999999999999999999754
No 445
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=95.83 E-value=0.019 Score=52.71 Aligned_cols=50 Identities=14% Similarity=0.111 Sum_probs=38.2
Q ss_pred ccceEEEeecCCCCChhhHHH----Hhc-CCCEEEeccccccchHHHHHHHHHHh
Q 018394 195 YMKCVYVYNKIDVIGIDDVDK----LAR-QPNSVVISCNLKLNLDRLLARMWEEM 244 (356)
Q Consensus 195 ~~p~i~v~NK~Dl~~~~~~~~----l~~-~~~~i~iSa~~~~~l~~L~~~i~~~l 244 (356)
.+|.++|+||+|+.+.+..+. +.. ..+++++||.++.|+++|.+.+.+.+
T Consensus 50 ~kp~ilVlNK~DL~~~~~~~~~~~~~~~~g~~~i~iSA~~~~gi~~L~~~i~~~l 104 (282)
T 1puj_A 50 NKPRIMLLNKADKADAAVTQQWKEHFENQGIRSLSINSVNGQGLNQIVPASKEIL 104 (282)
T ss_dssp SSCEEEEEECGGGSCHHHHHHHHHHHHTTTCCEEECCTTTCTTGGGHHHHHHHHH
T ss_pred CCCEEEEEECcccCCHHHHHHHHHHHHhcCCcEEEEECCCcccHHHHHHHHHHHH
Confidence 579999999999987644322 212 23688999999999999988877665
No 446
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=95.82 E-value=0.0048 Score=52.42 Aligned_cols=24 Identities=21% Similarity=0.396 Sum_probs=21.4
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcCC
Q 018394 20 GRVALIGFPSVGKSTLLTLLTGTH 43 (356)
Q Consensus 20 ~~v~LvG~~gaGKSTLln~L~g~~ 43 (356)
..++|+|++|||||||++.|....
T Consensus 5 ~~i~i~G~sGsGKTTl~~~L~~~l 28 (169)
T 1xjc_A 5 NVWQVVGYKHSGKTTLMEKWVAAA 28 (169)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHhh
Confidence 479999999999999999998753
No 447
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=95.79 E-value=0.0032 Score=56.69 Aligned_cols=25 Identities=20% Similarity=0.189 Sum_probs=22.5
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHcCC
Q 018394 19 HGRVALIGFPSVGKSTLLTLLTGTH 43 (356)
Q Consensus 19 g~~v~LvG~~gaGKSTLln~L~g~~ 43 (356)
+..+.|+|+|||||||+.+.|....
T Consensus 32 ~~~i~l~G~~GsGKSTla~~L~~~l 56 (253)
T 2p5t_B 32 PIAILLGGQSGAGKTTIHRIKQKEF 56 (253)
T ss_dssp CEEEEEESCGGGTTHHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhc
Confidence 5789999999999999999998754
No 448
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=95.77 E-value=0.0038 Score=52.64 Aligned_cols=24 Identities=21% Similarity=0.109 Sum_probs=17.5
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHcC
Q 018394 19 HGRVALIGFPSVGKSTLLTLLTGT 42 (356)
Q Consensus 19 g~~v~LvG~~gaGKSTLln~L~g~ 42 (356)
+..|.|.|+|||||||+.+.|...
T Consensus 5 ~~~I~l~G~~GsGKST~a~~La~~ 28 (183)
T 2vli_A 5 SPIIWINGPFGVGKTHTAHTLHER 28 (183)
T ss_dssp CCEEEEECCC----CHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHh
Confidence 468999999999999999999754
No 449
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=95.77 E-value=0.0044 Score=55.62 Aligned_cols=23 Identities=30% Similarity=0.562 Sum_probs=20.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 018394 21 RVALIGFPSVGKSTLLTLLTGTH 43 (356)
Q Consensus 21 ~v~LvG~~gaGKSTLln~L~g~~ 43 (356)
-+.|+||||+|||||.++|++..
T Consensus 47 ~vll~G~~GtGKT~la~~la~~~ 69 (257)
T 1lv7_A 47 GVLMVGPPGTGKTLLAKAIAGEA 69 (257)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred eEEEECcCCCCHHHHHHHHHHHc
Confidence 58999999999999999999763
No 450
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=95.76 E-value=0.0049 Score=51.41 Aligned_cols=23 Identities=17% Similarity=0.242 Sum_probs=20.4
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcC
Q 018394 20 GRVALIGFPSVGKSTLLTLLTGT 42 (356)
Q Consensus 20 ~~v~LvG~~gaGKSTLln~L~g~ 42 (356)
..|+|.|+|||||||+.+.|...
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~ 25 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELARA 25 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHH
Confidence 36899999999999999999854
No 451
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=95.75 E-value=0.0052 Score=53.59 Aligned_cols=22 Identities=32% Similarity=0.579 Sum_probs=19.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q 018394 21 RVALIGFPSVGKSTLLTLLTGT 42 (356)
Q Consensus 21 ~v~LvG~~gaGKSTLln~L~g~ 42 (356)
.|+|.|+|||||||+.+.|...
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~ 23 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEK 23 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999999753
No 452
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=95.75 E-value=0.0052 Score=52.00 Aligned_cols=23 Identities=26% Similarity=0.313 Sum_probs=20.6
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcC
Q 018394 20 GRVALIGFPSVGKSTLLTLLTGT 42 (356)
Q Consensus 20 ~~v~LvG~~gaGKSTLln~L~g~ 42 (356)
..|+|.|+|||||||+.+.|...
T Consensus 7 ~~I~l~G~~GsGKsT~~~~L~~~ 29 (194)
T 1qf9_A 7 NVVFVLGGPGSGKGTQCANIVRD 29 (194)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHH
Confidence 48999999999999999999753
No 453
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=95.74 E-value=0.014 Score=55.82 Aligned_cols=55 Identities=13% Similarity=0.105 Sum_probs=39.5
Q ss_pred ccceEEEeecCCCCChh----hHH----HHh-c--C--CCEEEeccccccchHHHHHHHHHHhCceEE
Q 018394 195 YMKCVYVYNKIDVIGID----DVD----KLA-R--Q--PNSVVISCNLKLNLDRLLARMWEEMGLVRV 249 (356)
Q Consensus 195 ~~p~i~v~NK~Dl~~~~----~~~----~l~-~--~--~~~i~iSa~~~~~l~~L~~~i~~~l~~i~~ 249 (356)
.+|.++|+||+|+.+.+ .+. ... . . ..++++||++|.|+++|.+.+.+.+.-.++
T Consensus 98 ~~piilV~NK~DLl~~~~~~~~~~~~l~~~~~~~g~~~~~v~~iSA~~g~gi~~L~~~I~~~~~~~~i 165 (369)
T 3ec1_A 98 DNPILLVGNKADLLPRSVKYPKLLRWMRRMAEELGLCPVDVCLVSAAKGIGMAKVMEAINRYREGGDV 165 (369)
T ss_dssp TSCEEEEEECGGGSCTTCCHHHHHHHHHHHHHTTTCCCSEEEECBTTTTBTHHHHHHHHHHHHTTSCE
T ss_pred CCCEEEEEEChhcCCCccCHHHHHHHHHHHHHHcCCCcccEEEEECCCCCCHHHHHHHHHhhcccCcE
Confidence 47999999999997542 121 111 1 1 247899999999999999999887654333
No 454
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=95.73 E-value=0.0047 Score=56.92 Aligned_cols=24 Identities=25% Similarity=0.296 Sum_probs=21.5
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHcC
Q 018394 19 HGRVALIGFPSVGKSTLLTLLTGT 42 (356)
Q Consensus 19 g~~v~LvG~~gaGKSTLln~L~g~ 42 (356)
+..+.|.|+||||||||.+.|...
T Consensus 33 ~~livl~G~sGsGKSTla~~L~~~ 56 (287)
T 1gvn_B 33 PTAFLLGGQPGSGKTSLRSAIFEE 56 (287)
T ss_dssp CEEEEEECCTTSCTHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 468999999999999999999754
No 455
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=95.72 E-value=0.0048 Score=54.10 Aligned_cols=24 Identities=29% Similarity=0.394 Sum_probs=21.4
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHcC
Q 018394 19 HGRVALIGFPSVGKSTLLTLLTGT 42 (356)
Q Consensus 19 g~~v~LvG~~gaGKSTLln~L~g~ 42 (356)
...|+|+|+|||||||+.+.|+..
T Consensus 5 ~~~I~l~G~~GsGKsT~~~~La~~ 28 (222)
T 1zak_A 5 PLKVMISGAPASGKGTQCELIKTK 28 (222)
T ss_dssp SCCEEEEESTTSSHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 468999999999999999999854
No 456
>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*
Probab=95.71 E-value=0.0044 Score=59.18 Aligned_cols=42 Identities=12% Similarity=0.235 Sum_probs=26.6
Q ss_pred EEEECCEeecccCccccccccccCccccccccccccchhHHHHHHhcCC
Q 018394 60 IIHYNDTKIQLLDLPGIIEGASEGKGRGRQVIAVSKSSDIVLMVLDASK 108 (356)
Q Consensus 60 ~i~~~g~~i~~~D~pGl~~~~~~~~~~~~~~~~~~~~~d~i~~v~d~~~ 108 (356)
.+.+++..+.++||+|-.... ......+++++.+++|+|.+.
T Consensus 195 ~~~~~~~~l~i~Dt~Gq~~~r-------~~w~~~f~~~~~iIfv~dls~ 236 (362)
T 1zcb_A 195 DFEIKNVPFKMVDVGGQRSER-------KRWFECFDSVTSILFLVSSSE 236 (362)
T ss_dssp EEEETTEEEEEEEECC--------------CTTSCTTCCEEEEEEETTC
T ss_pred EeeeCCeEEEEEeccchhhhh-------hhHHHHhCCCCEEEEEEECcc
Confidence 456788899999999864321 112234577888888888765
No 457
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=95.70 E-value=0.006 Score=53.76 Aligned_cols=22 Identities=23% Similarity=0.314 Sum_probs=19.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q 018394 21 RVALIGFPSVGKSTLLTLLTGT 42 (356)
Q Consensus 21 ~v~LvG~~gaGKSTLln~L~g~ 42 (356)
.|+|.|+|||||||+.+.|+..
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~ 23 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDK 23 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999999753
No 458
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=95.68 E-value=0.0062 Score=53.33 Aligned_cols=24 Identities=29% Similarity=0.459 Sum_probs=21.5
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHcC
Q 018394 19 HGRVALIGFPSVGKSTLLTLLTGT 42 (356)
Q Consensus 19 g~~v~LvG~~gaGKSTLln~L~g~ 42 (356)
+..|+|+|+|||||||+.+.|+..
T Consensus 5 ~~~I~l~G~~GsGKsT~a~~La~~ 28 (217)
T 3be4_A 5 KHNLILIGAPGSGKGTQCEFIKKE 28 (217)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHH
Confidence 468999999999999999999754
No 459
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=95.66 E-value=0.0063 Score=53.30 Aligned_cols=23 Identities=26% Similarity=0.333 Sum_probs=20.4
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcC
Q 018394 20 GRVALIGFPSVGKSTLLTLLTGT 42 (356)
Q Consensus 20 ~~v~LvG~~gaGKSTLln~L~g~ 42 (356)
++|.|+|||||||+|.-..|+..
T Consensus 1 M~Iil~GpPGsGKgTqa~~La~~ 23 (206)
T 3sr0_A 1 MILVFLGPPGAGKGTQAKRLAKE 23 (206)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHH
Confidence 46889999999999999999864
No 460
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=95.62 E-value=0.0065 Score=52.26 Aligned_cols=24 Identities=25% Similarity=0.302 Sum_probs=21.3
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHcC
Q 018394 19 HGRVALIGFPSVGKSTLLTLLTGT 42 (356)
Q Consensus 19 g~~v~LvG~~gaGKSTLln~L~g~ 42 (356)
...|+|.|++||||||+.+.|...
T Consensus 15 ~~~I~l~G~~GsGKsT~~~~L~~~ 38 (203)
T 1ukz_A 15 VSVIFVLGGPGAGKGTQCEKLVKD 38 (203)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHH
Confidence 468999999999999999999854
No 461
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=95.58 E-value=0.0063 Score=52.33 Aligned_cols=22 Identities=23% Similarity=0.291 Sum_probs=20.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q 018394 21 RVALIGFPSVGKSTLLTLLTGT 42 (356)
Q Consensus 21 ~v~LvG~~gaGKSTLln~L~g~ 42 (356)
.|+|.|++||||||+.+.|+..
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~ 25 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAA 25 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHh
Confidence 7999999999999999999874
No 462
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=95.58 E-value=0.007 Score=54.69 Aligned_cols=24 Identities=38% Similarity=0.448 Sum_probs=21.5
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHcC
Q 018394 19 HGRVALIGFPSVGKSTLLTLLTGT 42 (356)
Q Consensus 19 g~~v~LvG~~gaGKSTLln~L~g~ 42 (356)
...|.|+|+|||||||+.+.|...
T Consensus 4 ~~lIvl~G~pGSGKSTla~~La~~ 27 (260)
T 3a4m_A 4 IMLIILTGLPGVGKSTFSKNLAKI 27 (260)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHH
Confidence 468999999999999999999864
No 463
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=95.58 E-value=0.0072 Score=54.10 Aligned_cols=24 Identities=33% Similarity=0.488 Sum_probs=21.5
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHcC
Q 018394 19 HGRVALIGFPSVGKSTLLTLLTGT 42 (356)
Q Consensus 19 g~~v~LvG~~gaGKSTLln~L~g~ 42 (356)
...|+|.|+|||||||+.+.|...
T Consensus 29 ~~~I~l~G~~GsGKsT~a~~L~~~ 52 (243)
T 3tlx_A 29 DGRYIFLGAPGSGKGTQSLNLKKS 52 (243)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHH
Confidence 568999999999999999999753
No 464
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=95.57 E-value=0.0073 Score=61.50 Aligned_cols=34 Identities=26% Similarity=0.263 Sum_probs=28.0
Q ss_pred CCeEEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCC
Q 018394 10 EGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSE 45 (356)
Q Consensus 10 ~s~~v~~~~g~~v~LvG~~gaGKSTLln~L~g~~~~ 45 (356)
+++.+.. +..++|+||||+|||||+++|++...+
T Consensus 53 l~~~i~~--g~~vll~Gp~GtGKTtlar~ia~~l~~ 86 (604)
T 3k1j_A 53 IKTAANQ--KRHVLLIGEPGTGKSMLGQAMAELLPT 86 (604)
T ss_dssp HHHHHHT--TCCEEEECCTTSSHHHHHHHHHHTSCC
T ss_pred ccccccC--CCEEEEEeCCCCCHHHHHHHHhccCCc
Confidence 3444555 679999999999999999999998754
No 465
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=95.51 E-value=0.0082 Score=50.02 Aligned_cols=23 Identities=39% Similarity=0.475 Sum_probs=20.7
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcC
Q 018394 20 GRVALIGFPSVGKSTLLTLLTGT 42 (356)
Q Consensus 20 ~~v~LvG~~gaGKSTLln~L~g~ 42 (356)
..|+|.|++||||||+-+.|...
T Consensus 8 ~~i~l~G~~GsGKSTva~~La~~ 30 (168)
T 1zuh_A 8 QHLVLIGFMGSGKSSLAQELGLA 30 (168)
T ss_dssp CEEEEESCTTSSHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHH
Confidence 47999999999999999999754
No 466
>4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans}
Probab=95.40 E-value=0.0027 Score=63.43 Aligned_cols=31 Identities=23% Similarity=0.164 Sum_probs=24.7
Q ss_pred CCCeEEEecCCcEEEEEcCCCCcHHHHHHHHHcC
Q 018394 9 GEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGT 42 (356)
Q Consensus 9 ~~s~~v~~~~g~~v~LvG~~gaGKSTLln~L~g~ 42 (356)
+++|++.+ | ..+|+|+|||||||||.+|...
T Consensus 53 ~~~l~f~~--g-~n~i~G~NGaGKS~lleAl~~l 83 (517)
T 4ad8_A 53 QLELELGG--G-FCAFTGETGAGKSIIVDALGLL 83 (517)
T ss_dssp CEEEECCC--S-EEEEEESHHHHHHHHTHHHHHH
T ss_pred eEEEecCC--C-eEEEEcCCCCCHHHHHHHHHHH
Confidence 34555544 5 9999999999999999999644
No 467
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=95.38 E-value=0.0025 Score=59.16 Aligned_cols=33 Identities=18% Similarity=0.039 Sum_probs=26.8
Q ss_pred CCeEEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCC
Q 018394 10 EGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSE 45 (356)
Q Consensus 10 ~s~~v~~~~g~~v~LvG~~gaGKSTLln~L~g~~~~ 45 (356)
++|.. + +.+++++|+||+||||+++.|++...+
T Consensus 92 i~~~~-~--~~vi~i~G~~G~GKTT~~~~la~~~~~ 124 (297)
T 1j8m_F 92 VIPDK-I--PYVIMLVGVQGTGKTTTAGKLAYFYKK 124 (297)
T ss_dssp CSCSS-S--SEEEEEECSSCSSTTHHHHHHHHHHHH
T ss_pred cccCC-C--CeEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 56653 2 579999999999999999999987543
No 468
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=95.33 E-value=0.0095 Score=51.52 Aligned_cols=23 Identities=26% Similarity=0.328 Sum_probs=21.0
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcC
Q 018394 20 GRVALIGFPSVGKSTLLTLLTGT 42 (356)
Q Consensus 20 ~~v~LvG~~gaGKSTLln~L~g~ 42 (356)
..|+|+|.+||||||+-+.|...
T Consensus 13 ~iIgltG~~GSGKSTva~~L~~~ 35 (192)
T 2grj_A 13 MVIGVTGKIGTGKSTVCEILKNK 35 (192)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHh
Confidence 68999999999999999999854
No 469
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=95.28 E-value=0.011 Score=49.32 Aligned_cols=25 Identities=32% Similarity=0.466 Sum_probs=21.5
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHcCC
Q 018394 19 HGRVALIGFPSVGKSTLLTLLTGTH 43 (356)
Q Consensus 19 g~~v~LvG~~gaGKSTLln~L~g~~ 43 (356)
...+.|.|+||+|||||++.++...
T Consensus 43 ~~~~ll~G~~G~GKT~l~~~~~~~~ 67 (195)
T 1jbk_A 43 KNNPVLIGEPGVGKTAIVEGLAQRI 67 (195)
T ss_dssp SCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCceEEECCCCCCHHHHHHHHHHHH
Confidence 3578999999999999999998653
No 470
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=95.28 E-value=0.011 Score=52.37 Aligned_cols=24 Identities=33% Similarity=0.415 Sum_probs=21.6
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHcC
Q 018394 19 HGRVALIGFPSVGKSTLLTLLTGT 42 (356)
Q Consensus 19 g~~v~LvG~~gaGKSTLln~L~g~ 42 (356)
+..|+|+|+|||||||+.+.|+..
T Consensus 16 ~~~I~l~G~~GsGKsT~a~~La~~ 39 (233)
T 1ak2_A 16 GVRAVLLGPPGAGKGTQAPKLAKN 39 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 468999999999999999999854
No 471
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=95.27 E-value=0.0039 Score=59.91 Aligned_cols=32 Identities=19% Similarity=0.283 Sum_probs=26.9
Q ss_pred CCCeEEEecCCcEEEEEcCCCCcHHHHHHHHHcC
Q 018394 9 GEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGT 42 (356)
Q Consensus 9 ~~s~~v~~~~g~~v~LvG~~gaGKSTLln~L~g~ 42 (356)
++.+.+.+ |.+++|+|++|+|||||++.|++.
T Consensus 166 D~~~pi~r--GQr~~IvG~sG~GKTtLl~~Iar~ 197 (422)
T 3ice_A 166 DLASPIGR--GQRGLIVAPPKAGKTMLLQNIAQS 197 (422)
T ss_dssp HHHSCCBT--TCEEEEECCSSSSHHHHHHHHHHH
T ss_pred eeeeeecC--CcEEEEecCCCCChhHHHHHHHHH
Confidence 34555666 789999999999999999999875
No 472
>4ido_A Atlastin-1; GTPase, GTP/GDP binding, hydrolase; HET: GDP; 2.09A {Homo sapiens} PDB: 4idn_A* 3q5d_A* 3q5e_A* 4idq_A* 4idp_A* 3qnu_A* 3qof_A*
Probab=95.26 E-value=0.01 Score=58.16 Aligned_cols=21 Identities=29% Similarity=0.324 Sum_probs=19.1
Q ss_pred cEEEEEcCCCCcHHHHHHHHH
Q 018394 20 GRVALIGFPSVGKSTLLTLLT 40 (356)
Q Consensus 20 ~~v~LvG~~gaGKSTLln~L~ 40 (356)
..|+|+|+.++|||+|+|.|.
T Consensus 68 ~vvsv~G~~~~gks~l~N~ll 88 (457)
T 4ido_A 68 VAVSVAGAFRKGKSFLMDFML 88 (457)
T ss_dssp EEEEEEEBTTSSHHHHHHHHH
T ss_pred EEEEEECCCCCchhHHHHHHH
Confidence 578999999999999999775
No 473
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=95.25 E-value=0.01 Score=56.53 Aligned_cols=25 Identities=28% Similarity=0.246 Sum_probs=22.7
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHcCC
Q 018394 19 HGRVALIGFPSVGKSTLLTLLTGTH 43 (356)
Q Consensus 19 g~~v~LvG~~gaGKSTLln~L~g~~ 43 (356)
|..+.|+||||||||||+..++...
T Consensus 61 G~i~~I~GppGsGKSTLal~la~~~ 85 (356)
T 3hr8_A 61 GRIVEIFGQESSGKTTLALHAIAEA 85 (356)
T ss_dssp TEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHH
Confidence 6799999999999999999998764
No 474
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=95.21 E-value=0.012 Score=51.47 Aligned_cols=25 Identities=16% Similarity=0.178 Sum_probs=22.0
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHcCC
Q 018394 19 HGRVALIGFPSVGKSTLLTLLTGTH 43 (356)
Q Consensus 19 g~~v~LvG~~gaGKSTLln~L~g~~ 43 (356)
+..+.|.||||+|||||++++....
T Consensus 52 ~~~~ll~G~~G~GKT~la~~l~~~~ 76 (242)
T 3bos_A 52 VQAIYLWGPVKSGRTHLIHAACARA 76 (242)
T ss_dssp CSEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHH
Confidence 4689999999999999999998653
No 475
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=95.16 E-value=0.012 Score=52.05 Aligned_cols=24 Identities=25% Similarity=0.285 Sum_probs=20.7
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHcC
Q 018394 19 HGRVALIGFPSVGKSTLLTLLTGT 42 (356)
Q Consensus 19 g~~v~LvG~~gaGKSTLln~L~g~ 42 (356)
..+|.|+|||||||+|.-..|+..
T Consensus 29 ~kiI~llGpPGsGKgTqa~~L~~~ 52 (217)
T 3umf_A 29 AKVIFVLGGPGSGKGTQCEKLVQK 52 (217)
T ss_dssp CEEEEEECCTTCCHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHH
Confidence 347889999999999999999854
No 476
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=95.15 E-value=0.011 Score=52.96 Aligned_cols=24 Identities=17% Similarity=0.134 Sum_probs=21.3
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHcC
Q 018394 19 HGRVALIGFPSVGKSTLLTLLTGT 42 (356)
Q Consensus 19 g~~v~LvG~~gaGKSTLln~L~g~ 42 (356)
-..|+|.|++||||||+-+.|...
T Consensus 22 ~~iI~I~G~~GSGKST~a~~L~~~ 45 (252)
T 1uj2_A 22 PFLIGVSGGTASGKSSVCAKIVQL 45 (252)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHH
T ss_pred cEEEEEECCCCCCHHHHHHHHHHH
Confidence 358999999999999999999864
No 477
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=95.08 E-value=0.0076 Score=53.05 Aligned_cols=25 Identities=32% Similarity=0.137 Sum_probs=22.3
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHcCC
Q 018394 19 HGRVALIGFPSVGKSTLLTLLTGTH 43 (356)
Q Consensus 19 g~~v~LvG~~gaGKSTLln~L~g~~ 43 (356)
|..|+|.|++||||||+.+.|....
T Consensus 6 g~~i~~eG~~gsGKsT~~~~l~~~l 30 (213)
T 4edh_A 6 GLFVTLEGPEGAGKSTNRDYLAERL 30 (213)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHHH
Confidence 6799999999999999999997543
No 478
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=95.05 E-value=0.013 Score=50.36 Aligned_cols=24 Identities=29% Similarity=0.303 Sum_probs=21.5
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcCC
Q 018394 20 GRVALIGFPSVGKSTLLTLLTGTH 43 (356)
Q Consensus 20 ~~v~LvG~~gaGKSTLln~L~g~~ 43 (356)
..+.|.|+||+|||||+++|+...
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~~ 78 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANEL 78 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHH
Confidence 579999999999999999998754
No 479
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=95.04 E-value=0.012 Score=53.97 Aligned_cols=23 Identities=26% Similarity=0.315 Sum_probs=20.7
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHc
Q 018394 19 HGRVALIGFPSVGKSTLLTLLTG 41 (356)
Q Consensus 19 g~~v~LvG~~gaGKSTLln~L~g 41 (356)
...|+|.|++||||||+.+.|..
T Consensus 75 ~~iI~I~G~~GSGKSTva~~La~ 97 (281)
T 2f6r_A 75 LYVLGLTGISGSGKSSVAQRLKN 97 (281)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHH
Confidence 35899999999999999999983
No 480
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=94.96 E-value=0.0078 Score=63.43 Aligned_cols=30 Identities=20% Similarity=0.319 Sum_probs=25.5
Q ss_pred eEEEecCCcEEEEEcCCCCcHHHHHHHHHcCC
Q 018394 12 FEVTKFGHGRVALIGFPSVGKSTLLTLLTGTH 43 (356)
Q Consensus 12 ~~v~~~~g~~v~LvG~~gaGKSTLln~L~g~~ 43 (356)
|.+.. +..+.|+||||||||||+++|++..
T Consensus 233 l~i~~--~~~vLL~Gp~GtGKTtLarala~~l 262 (806)
T 1ypw_A 233 IGVKP--PRGILLYGPPGTGKTLIARAVANET 262 (806)
T ss_dssp SCCCC--CCEEEECSCTTSSHHHHHHHHHHTT
T ss_pred cCCCC--CCeEEEECcCCCCHHHHHHHHHHHc
Confidence 34455 6689999999999999999999875
No 481
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=94.95 E-value=0.013 Score=54.09 Aligned_cols=25 Identities=24% Similarity=0.349 Sum_probs=22.4
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHcCC
Q 018394 19 HGRVALIGFPSVGKSTLLTLLTGTH 43 (356)
Q Consensus 19 g~~v~LvG~~gaGKSTLln~L~g~~ 43 (356)
+..+.|.||||+|||||.++|++..
T Consensus 49 ~~~vLL~Gp~GtGKT~la~ala~~~ 73 (301)
T 3cf0_A 49 SKGVLFYGPPGCGKTLLAKAIANEC 73 (301)
T ss_dssp CSEEEEECSSSSSHHHHHHHHHHHT
T ss_pred CceEEEECCCCcCHHHHHHHHHHHh
Confidence 4679999999999999999999764
No 482
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=94.92 E-value=0.014 Score=53.47 Aligned_cols=22 Identities=32% Similarity=0.386 Sum_probs=20.2
Q ss_pred cEEEEEcCCCCcHHHHHHHHHc
Q 018394 20 GRVALIGFPSVGKSTLLTLLTG 41 (356)
Q Consensus 20 ~~v~LvG~~gaGKSTLln~L~g 41 (356)
..|.|+|+|||||||+.+.|..
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~ 24 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIA 24 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4789999999999999999986
No 483
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=94.92 E-value=0.017 Score=55.12 Aligned_cols=21 Identities=38% Similarity=0.550 Sum_probs=19.4
Q ss_pred cEEEEEcCCCCcHHHHHHHHH
Q 018394 20 GRVALIGFPSVGKSTLLTLLT 40 (356)
Q Consensus 20 ~~v~LvG~~gaGKSTLln~L~ 40 (356)
...+|+|+|||||||||-+|.
T Consensus 26 gl~vi~G~NGaGKT~ileAI~ 46 (371)
T 3auy_A 26 GIVAIIGENGSGKSSIFEAVF 46 (371)
T ss_dssp EEEEEEECTTSSHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHH
Confidence 489999999999999999986
No 484
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=94.87 E-value=0.014 Score=53.32 Aligned_cols=25 Identities=24% Similarity=0.303 Sum_probs=22.2
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHcCC
Q 018394 19 HGRVALIGFPSVGKSTLLTLLTGTH 43 (356)
Q Consensus 19 g~~v~LvG~~gaGKSTLln~L~g~~ 43 (356)
...+.|.||||+|||||.+++++..
T Consensus 54 ~~~vll~Gp~GtGKT~la~~la~~~ 78 (297)
T 3b9p_A 54 AKGLLLFGPPGNGKTLLARAVATEC 78 (297)
T ss_dssp CSEEEEESSSSSCHHHHHHHHHHHT
T ss_pred CCeEEEECcCCCCHHHHHHHHHHHh
Confidence 4579999999999999999999754
No 485
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=94.83 E-value=0.014 Score=55.48 Aligned_cols=23 Identities=39% Similarity=0.453 Sum_probs=21.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 018394 21 RVALIGFPSVGKSTLLTLLTGTH 43 (356)
Q Consensus 21 ~v~LvG~~gaGKSTLln~L~g~~ 43 (356)
.++|+|+|||||||+.++|++..
T Consensus 26 ~i~l~G~~G~GKTTl~~~la~~l 48 (359)
T 2ga8_A 26 CVILVGSPGSGKSTIAEELCQII 48 (359)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHHHh
Confidence 49999999999999999998764
No 486
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=94.80 E-value=0.022 Score=52.70 Aligned_cols=47 Identities=26% Similarity=0.291 Sum_probs=34.5
Q ss_pred ccceEEEeecCCCCChhh---HHHHh---cC-CCEEEeccccccchHHHHHHHH
Q 018394 195 YMKCVYVYNKIDVIGIDD---VDKLA---RQ-PNSVVISCNLKLNLDRLLARMW 241 (356)
Q Consensus 195 ~~p~i~v~NK~Dl~~~~~---~~~l~---~~-~~~i~iSa~~~~~l~~L~~~i~ 241 (356)
.+|.++|+||+|+..... ...+. .. ..++++||++|.|++++.+.+.
T Consensus 115 ~~piilv~NK~DL~~~~~v~~~~~~~~~~~~~~~~~~~SAktg~gv~~lf~~l~ 168 (301)
T 1u0l_A 115 ELETVMVINKMDLYDEDDLRKVRELEEIYSGLYPIVKTSAKTGMGIEELKEYLK 168 (301)
T ss_dssp TCEEEEEECCGGGCCHHHHHHHHHHHHHHTTTSCEEECCTTTCTTHHHHHHHHS
T ss_pred CCCEEEEEeHHHcCCchhHHHHHHHHHHHhhhCcEEEEECCCCcCHHHHHHHhc
Confidence 369999999999986543 22221 21 4689999999999999877654
No 487
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=94.72 E-value=0.014 Score=54.75 Aligned_cols=25 Identities=12% Similarity=0.379 Sum_probs=22.3
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHcCC
Q 018394 19 HGRVALIGFPSVGKSTLLTLLTGTH 43 (356)
Q Consensus 19 g~~v~LvG~~gaGKSTLln~L~g~~ 43 (356)
+..+.|.|+||+|||||++.+++..
T Consensus 45 ~~~vli~G~~G~GKTtl~~~l~~~~ 69 (386)
T 2qby_A 45 PNNIFIYGLTGTGKTAVVKFVLSKL 69 (386)
T ss_dssp CCCEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHH
Confidence 4689999999999999999999754
No 488
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=94.69 E-value=0.015 Score=48.54 Aligned_cols=25 Identities=28% Similarity=0.388 Sum_probs=21.4
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHcCC
Q 018394 19 HGRVALIGFPSVGKSTLLTLLTGTH 43 (356)
Q Consensus 19 g~~v~LvG~~gaGKSTLln~L~g~~ 43 (356)
...+.|.|+||+|||||++.+....
T Consensus 43 ~~~vll~G~~G~GKT~la~~~~~~~ 67 (187)
T 2p65_A 43 KNNPILLGDPGVGKTAIVEGLAIKI 67 (187)
T ss_dssp SCEEEEESCGGGCHHHHHHHHHHHH
T ss_pred CCceEEECCCCCCHHHHHHHHHHHH
Confidence 3578899999999999999998653
No 489
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=94.63 E-value=0.015 Score=54.52 Aligned_cols=22 Identities=23% Similarity=0.412 Sum_probs=20.6
Q ss_pred EEEEcCCCCcHHHHHHHHHcCC
Q 018394 22 VALIGFPSVGKSTLLTLLTGTH 43 (356)
Q Consensus 22 v~LvG~~gaGKSTLln~L~g~~ 43 (356)
+.|.||||+||||+++++++..
T Consensus 49 ~ll~Gp~G~GKTtla~~la~~l 70 (340)
T 1sxj_C 49 LLFYGPPGTGKTSTIVALAREI 70 (340)
T ss_dssp EEEECSSSSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
Confidence 8999999999999999999864
No 490
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=94.61 E-value=0.02 Score=51.00 Aligned_cols=24 Identities=33% Similarity=0.584 Sum_probs=20.9
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHcC
Q 018394 19 HGRVALIGFPSVGKSTLLTLLTGT 42 (356)
Q Consensus 19 g~~v~LvG~~gaGKSTLln~L~g~ 42 (356)
..++||+|+|||||||+.+.|+..
T Consensus 8 ~~~~~~~G~pGsGKsT~a~~L~~~ 31 (230)
T 3gmt_A 8 HMRLILLGAPGAGKGTQANFIKEK 31 (230)
T ss_dssp -CEEEEECCTTSCHHHHHHHHHHH
T ss_pred ccceeeECCCCCCHHHHHHHHHHH
Confidence 468999999999999999999754
No 491
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=94.60 E-value=0.019 Score=54.19 Aligned_cols=24 Identities=33% Similarity=0.440 Sum_probs=21.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCC
Q 018394 21 RVALIGFPSVGKSTLLTLLTGTHS 44 (356)
Q Consensus 21 ~v~LvG~~gaGKSTLln~L~g~~~ 44 (356)
.+.|.||||+|||||++++.+...
T Consensus 46 ~~li~G~~G~GKTtl~~~l~~~~~ 69 (389)
T 1fnn_A 46 RATLLGRPGTGKTVTLRKLWELYK 69 (389)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHT
T ss_pred eEEEECCCCCCHHHHHHHHHHHHh
Confidence 799999999999999999997653
No 492
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=94.58 E-value=0.011 Score=58.39 Aligned_cols=23 Identities=30% Similarity=0.556 Sum_probs=20.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 018394 21 RVALIGFPSVGKSTLLTLLTGTH 43 (356)
Q Consensus 21 ~v~LvG~~gaGKSTLln~L~g~~ 43 (356)
-+.|+||||+|||||.+++++..
T Consensus 51 gvLL~GppGtGKT~Laraia~~~ 73 (476)
T 2ce7_A 51 GILLVGPPGTGKTLLARAVAGEA 73 (476)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHc
Confidence 38899999999999999999853
No 493
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=94.52 E-value=0.028 Score=45.78 Aligned_cols=25 Identities=28% Similarity=0.194 Sum_probs=21.8
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHcCC
Q 018394 19 HGRVALIGFPSVGKSTLLTLLTGTH 43 (356)
Q Consensus 19 g~~v~LvG~~gaGKSTLln~L~g~~ 43 (356)
+..|.|.|+||+|||+|.++|....
T Consensus 24 ~~~vll~G~~GtGKt~lA~~i~~~~ 48 (145)
T 3n70_A 24 DIAVWLYGAPGTGRMTGARYLHQFG 48 (145)
T ss_dssp CSCEEEESSTTSSHHHHHHHHHHSS
T ss_pred CCCEEEECCCCCCHHHHHHHHHHhC
Confidence 3578999999999999999998753
No 494
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=94.47 E-value=0.017 Score=55.25 Aligned_cols=25 Identities=20% Similarity=0.262 Sum_probs=22.3
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHcCC
Q 018394 19 HGRVALIGFPSVGKSTLLTLLTGTH 43 (356)
Q Consensus 19 g~~v~LvG~~gaGKSTLln~L~g~~ 43 (356)
+..++|+|+||||||||++.|+...
T Consensus 35 ~~~~~i~G~~G~GKs~~~~~~~~~~ 59 (392)
T 4ag6_A 35 NSNWTILAKPGAGKSFTAKMLLLRE 59 (392)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHH
T ss_pred cCceEEEcCCCCCHHHHHHHHHHHH
Confidence 5689999999999999999998754
No 495
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=94.47 E-value=0.016 Score=56.62 Aligned_cols=26 Identities=23% Similarity=0.144 Sum_probs=23.1
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHcCCC
Q 018394 19 HGRVALIGFPSVGKSTLLTLLTGTHS 44 (356)
Q Consensus 19 g~~v~LvG~~gaGKSTLln~L~g~~~ 44 (356)
+..++++|+|||||||++..|+....
T Consensus 97 ~~vI~lvG~~GsGKTTt~~kLA~~l~ 122 (433)
T 3kl4_A 97 PFIIMLVGVQGSGKTTTAGKLAYFYK 122 (433)
T ss_dssp SEEEEECCCTTSCHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 57999999999999999999997653
No 496
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=94.46 E-value=0.022 Score=53.93 Aligned_cols=27 Identities=19% Similarity=0.247 Sum_probs=22.6
Q ss_pred EEecCCcEEEEEcCCCCcHHHHHHHHHcC
Q 018394 14 VTKFGHGRVALIGFPSVGKSTLLTLLTGT 42 (356)
Q Consensus 14 v~~~~g~~v~LvG~~gaGKSTLln~L~g~ 42 (356)
+++ |..+.|.|+||+|||||+..++..
T Consensus 58 l~~--G~iv~I~G~pGsGKTtLal~la~~ 84 (349)
T 2zr9_A 58 LPR--GRVIEIYGPESSGKTTVALHAVAN 84 (349)
T ss_dssp EET--TSEEEEEESTTSSHHHHHHHHHHH
T ss_pred ccC--CeEEEEECCCCCCHHHHHHHHHHH
Confidence 445 679999999999999998877754
No 497
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=94.43 E-value=0.023 Score=49.49 Aligned_cols=25 Identities=28% Similarity=0.143 Sum_probs=22.0
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHcCC
Q 018394 19 HGRVALIGFPSVGKSTLLTLLTGTH 43 (356)
Q Consensus 19 g~~v~LvG~~gaGKSTLln~L~g~~ 43 (356)
+..|+|+|++|+|||||...|...-
T Consensus 34 g~~ilI~GpsGsGKStLA~~La~~g 58 (205)
T 2qmh_A 34 GLGVLITGDSGVGKSETALELVQRG 58 (205)
T ss_dssp TEEEEEECCCTTTTHHHHHHHHTTT
T ss_pred CEEEEEECCCCCCHHHHHHHHHHhC
Confidence 4789999999999999999998653
No 498
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=94.41 E-value=0.023 Score=49.12 Aligned_cols=23 Identities=26% Similarity=0.339 Sum_probs=20.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 018394 21 RVALIGFPSVGKSTLLTLLTGTH 43 (356)
Q Consensus 21 ~v~LvG~~gaGKSTLln~L~g~~ 43 (356)
.+.|.|++|+|||||++.+....
T Consensus 47 ~~ll~G~~G~GKT~l~~~~~~~~ 69 (250)
T 1njg_A 47 AYLFSGTRGVGKTSIARLLAKGL 69 (250)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 68999999999999999998643
No 499
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=94.37 E-value=0.018 Score=53.36 Aligned_cols=24 Identities=21% Similarity=0.277 Sum_probs=21.4
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcCC
Q 018394 20 GRVALIGFPSVGKSTLLTLLTGTH 43 (356)
Q Consensus 20 ~~v~LvG~~gaGKSTLln~L~g~~ 43 (356)
..+.|.||||+|||||++++.+..
T Consensus 38 ~~lll~G~~GtGKT~la~~i~~~~ 61 (324)
T 1l8q_A 38 NPIFIYGSVGTGKTHLLQAAGNEA 61 (324)
T ss_dssp SSEEEECSSSSSHHHHHHHHHHHH
T ss_pred CeEEEECCCCCcHHHHHHHHHHHH
Confidence 478999999999999999998754
No 500
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=94.34 E-value=0.023 Score=49.35 Aligned_cols=24 Identities=29% Similarity=0.303 Sum_probs=21.4
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHcC
Q 018394 19 HGRVALIGFPSVGKSTLLTLLTGT 42 (356)
Q Consensus 19 g~~v~LvG~~gaGKSTLln~L~g~ 42 (356)
+..|+|+|++||||||+.+.|...
T Consensus 3 ~~~i~i~G~~gsGkst~~~~l~~~ 26 (219)
T 2h92_A 3 AINIALDGPAAAGKSTIAKRVASE 26 (219)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHh
Confidence 358999999999999999999864
Done!