BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 018395
(356 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3QAC|A Chain A, Structure Of Amaranth 11s Proglobulin Seed Storage Protein
From Amaranthus Hypochondriacus L
Length = 465
Score = 118 bits (295), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 96/407 (23%), Positives = 164/407 (40%), Gaps = 93/407 (22%)
Query: 19 GSYHAWCPNELPMLRQGNIGAAKLALEKNGFALPHYCDSARVAYVLQGSGVAGIVLP--- 75
G W NE R + + +E +G LP + + + Y+ QG+G+ G+++P
Sbjct: 33 GLTEVWDSNEQE-FRCAGVSVIRRTIEPHGLLLPSFTSAPELIYIEQGNGITGMMIPGCP 91
Query: 76 ----------------------------------EKEEKVVAIKKGDGIALPFGVVTWWY 101
++ +K+ +++GD A+P GV W Y
Sbjct: 92 ETYESGSQQFQGGEDERIREQGSRKFGMRGDRFQDQHQKIRHLREGDIFAMPAGVSHWAY 151
Query: 102 NKEDTELVVLFLGDTSKGHKAGEF-----TNFFLTG----------------------AN 134
N D LV + L DT+ + A + T F+L G
Sbjct: 152 NNGDQPLVAVILIDTA--NHANQLDKNFPTRFYLAGKPQQEHSGEHQFSRESRRGERNTG 209
Query: 135 GIFTGFSTEFVSRAWDLDENTVKTLVGKQTGKG-IVKLDANAKLPEPK----KEHRDG-- 187
IF GF T ++ ++ + E + L +Q +G IV++ + +P +E G
Sbjct: 210 NIFRGFETRLLAESFGVSEEIAQKLQAEQDDRGNIVRVQEGLHVIKPPSRAWEEREQGSR 269
Query: 188 -----------------MAFNCEE-APLDVDIKNGGRVVLLNTKNLPLVGEVGCGADLVR 229
+A N ++ + DV GR+ +N+ NLP++ + A
Sbjct: 270 GSRYLPNGVEETICSARLAVNVDDPSKADVYTPEAGRLTTVNSFNLPILRHLRLSAAKGV 329
Query: 230 LDGKAMCSPGFSCDSALQVTYIVRGSGRAQIVGPDGKRVLETTVKAGNLFIVPRFYVVSK 289
L AM +P ++ + A + Y VRG GR QIV G+ V + + G L +VP+ + + K
Sbjct: 330 LYRNAMMAPHYNLN-AHNIMYCVRGRGRIQIVNDQGQSVFDEELSRGQLVVVPQNFAIVK 388
Query: 290 IADPDGLAWFSIITTPNPIFTHLAGSIGTWKSLSPSVLEAAFNVPSD 336
A DG W S T+ N +F LAG +SL V+ + + +
Sbjct: 389 QAFEDGFEWVSFKTSENAMFQSLAGRTSAIRSLPIDVVSNIYQISRE 435
>pdb|2EVX|A Chain A, Crystal Structure Of Pumpkin Seed Globulin
pdb|2E9Q|A Chain A, Recombinant Pro-11s Globulin Of Pumpkin
Length = 459
Score = 116 bits (290), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 92/390 (23%), Positives = 166/390 (42%), Gaps = 74/390 (18%)
Query: 37 IGAAKLALEKNGFALPHYCDSARVAYVLQGSGVAGIVLP--------------------- 75
+ + + G LP + ++ ++ +V QG G+ GI +P
Sbjct: 63 VNMIRHTIRPKGLLLPGFSNAPKLIFVAQGFGIRGIAIPGCAETYQTDLRRSQSAGSAFK 122
Query: 76 EKEEKVVAIKKGDGIALPFGVVTWWYNKEDTELVVLFLGDTS-----------KGHKAG- 123
++ +K+ ++GD + +P GV W YN+ ++LV++ DT K + AG
Sbjct: 123 DQHQKIRPFREGDLLVVPAGVSHWMYNRGQSDLVLIVFADTRNVANQIDPYLRKFYLAGR 182
Query: 124 ---------EFTNFFLTGANG-----IFTGFSTEFVSRAWDLDENTVKTLVGKQTGKG-I 168
E+ G++G IF+GF+ EF+ A+ +D V+ L G+ + I
Sbjct: 183 PEQVERGVEEWERSSRKGSSGEKSGNIFSGFADEFLEEAFQIDGGLVRKLKGEDDERDRI 242
Query: 169 VKLDANAK--LPEPKKEHRDGMAF---------NCEEAPLDVDIKN-------------- 203
V++D + + LPE +E R + EE + +K
Sbjct: 243 VQVDEDFEVLLPEKDEEERSRGRYIESESESENGLEETICTLRLKQNIGRSERADVFNPR 302
Query: 204 GGRVVLLNTKNLPLVGEVGCGADLVRLDGKAMCSPGFSCDSALQVTYIVRGSGRAQIVGP 263
GGR+ N LP++ +V A+ L AM +P ++ +S V Y RG+ R Q+V
Sbjct: 303 GGRISTANYHTLPILRQVRLSAERGVLYSNAMVAPHYTVNSH-SVMYATRGNARVQVVDN 361
Query: 264 DGKRVLETTVKAGNLFIVPRFYVVSKIADPDGLAWFSIITTPNPIFTHLAGSIGTWKSLS 323
G+ V + V+ G + ++P+ +VV K A G W + T N I LAG + + L
Sbjct: 362 FGQSVFDGEVREGQVLMIPQNFVVIKRASDRGFEWIAFKTNDNAITNLLAGRVSQMRMLP 421
Query: 324 PSVLEAAFNVPSDVEKQFRSKRANEAIFFP 353
VL + + + ++ + + + P
Sbjct: 422 LGVLSNMYRISREEAQRLKYGQQEMRVLSP 451
Score = 33.1 bits (74), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 28/62 (45%), Gaps = 1/62 (1%)
Query: 13 VYGGNGGSYHAWCPNELPMLRQGNIGAAKLALEKNGFALPHYC-DSARVAYVLQGSGVAG 71
V+ GG + LP+LRQ + A + L N PHY +S V Y +G+
Sbjct: 298 VFNPRGGRISTANYHTLPILRQVRLSAERGVLYSNAMVAPHYTVNSHSVMYATRGNARVQ 357
Query: 72 IV 73
+V
Sbjct: 358 VV 359
>pdb|3EHK|A Chain A, Crystal Structure Of Pru Du Amandin, An Allergenic Protein
From Prunus Dulcis
pdb|3EHK|B Chain B, Crystal Structure Of Pru Du Amandin, An Allergenic Protein
From Prunus Dulcis
pdb|3EHK|C Chain C, Crystal Structure Of Pru Du Amandin, An Allergenic Protein
From Prunus Dulcis
pdb|3EHK|D Chain D, Crystal Structure Of Pru Du Amandin, An Allergenic Protein
From Prunus Dulcis
pdb|3EHK|E Chain E, Crystal Structure Of Pru Du Amandin, An Allergenic Protein
From Prunus Dulcis
pdb|3EHK|F Chain F, Crystal Structure Of Pru Du Amandin, An Allergenic Protein
From Prunus Dulcis
pdb|3FZ3|A Chain A, Crystal Structure Of Almond Pru1 Protein
pdb|3FZ3|B Chain B, Crystal Structure Of Almond Pru1 Protein
pdb|3FZ3|C Chain C, Crystal Structure Of Almond Pru1 Protein
pdb|3FZ3|D Chain D, Crystal Structure Of Almond Pru1 Protein
pdb|3FZ3|E Chain E, Crystal Structure Of Almond Pru1 Protein
pdb|3FZ3|F Chain F, Crystal Structure Of Almond Pru1 Protein
Length = 531
Score = 105 bits (263), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 83/349 (23%), Positives = 143/349 (40%), Gaps = 80/349 (22%)
Query: 76 EKEEKVVAIKKGDGIALPFGVVTWWYNKEDTELVVLFLGDTSKGHKAGEFT--NFFLTG- 132
++ +K I++GD +A+P GV W YN D ELV + L S H + F+L G
Sbjct: 168 DRHQKTRRIREGDVVAIPAGVAYWSYNDGDQELVAVNLFHVSSDHNQLDQNPRKFYLAGN 227
Query: 133 ----------------------------------------ANGIFTGFSTEFVSRAWDLD 152
N +F+GF+T+ +++A +++
Sbjct: 228 PENEFNQQGQSQPRQQGEQGRPGQHQQPFGRPRQQEQQGNGNNVFSGFNTQLLAQALNVN 287
Query: 153 ENTVKTLVGKQTGKG-IVKLDANAKLPEP---------------------KKEHRDGMAF 190
E T + L G+ + I+++ N +P +++ MA
Sbjct: 288 EETARNLQGQNDNRNQIIQVRGNLDFVQPPRGRQEREHEERQQEQLQQERQQQGEQLMAN 347
Query: 191 NCEEA------------PLDVDI--KNGGRVVLLNTKNLPLVGEVGCGADLVRLDGKAMC 236
EE P DI GR+ LN+ NLP++ + A+ +
Sbjct: 348 GLEETFCSLRLKENIGNPERADIFSPRAGRISTLNSHNLPILRFLRLSAERGFFYRNGIY 407
Query: 237 SPGFSCDSALQVTYIVRGSGRAQIVGPDGKRVLETTVKAGNLFIVPRFYVVSKIADPDGL 296
SP ++ + A V Y++RG+ R Q+V +G +L+ V+ G LFIVP+ + V + A G
Sbjct: 408 SPHWNVN-AHSVVYVIRGNARVQVVNENGDAILDQEVQQGQLFIVPQNHGVIQQAGNQGF 466
Query: 297 AWFSIITTPNPIFTHLAGSIGTWKSLSPSVLEAAFNVPSDVEKQFRSKR 345
+F+ T N LAG ++L VL A+ + + +Q + R
Sbjct: 467 EYFAFKTEENAFINTLAGRTSFLRALPDEVLANAYQISREQARQLKYNR 515
Score = 38.9 bits (89), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 13/38 (34%), Positives = 26/38 (68%)
Query: 37 IGAAKLALEKNGFALPHYCDSARVAYVLQGSGVAGIVL 74
+ A+++ +++NG LP Y ++ ++ Y++QG GV G V
Sbjct: 48 VAASRITIQRNGLHLPSYSNAPQLIYIVQGRGVLGAVF 85
>pdb|1FXZ|A Chain A, Crystal Structure Of Soybean Proglycinin A1ab1b Homotrimer
pdb|1FXZ|B Chain B, Crystal Structure Of Soybean Proglycinin A1ab1b Homotrimer
pdb|1FXZ|C Chain C, Crystal Structure Of Soybean Proglycinin A1ab1b Homotrimer
Length = 476
Score = 103 bits (258), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 96/442 (21%), Positives = 165/442 (37%), Gaps = 108/442 (24%)
Query: 18 GGSYHAWCPNELPMLRQGNIGAAKLALEKNGFALPHYCDSARVAYVLQGSGVAGIVLP-- 75
GG W PN P G + ++ L +N P Y + + Y+ QG G+ G++ P
Sbjct: 30 GGLIETWNPNNKPFQCAG-VALSRCTLNRNALRRPSYTNGPQEIYIQQGKGIFGMIYPGC 88
Query: 76 --------------------EKEEKVVAIKKGDGIALPFGVVTWWYNKEDTELVVLFLGD 115
++ +K+ ++GD IA+P GV W YN EDT +V + + D
Sbjct: 89 PSTFEEPQQPQQRGQSSRPQDRHQKIYNFREGDLIAVPTGVAWWMYNNEDTPVVAVSIID 148
Query: 116 TSK---------------GHKAGEFTNFFL-----------------TGANGIFTGFSTE 143
T+ G++ EF + I +GF+ E
Sbjct: 149 TNSLENQLDQMPRRFYLAGNQEQEFLKYQQEQGGHQSQKGKHQQEEENEGGSILSGFTLE 208
Query: 144 FVSRAWDLDENTVKTLVGKQTGK---GIVKL----------------------------- 171
F+ A+ +D+ K L G+ G+ IV +
Sbjct: 209 FLEHAFSVDKQIAKNLQGENEGEDKGAIVTVKGGLSVIKPPTDEQQQRPQEEEEEEEDEK 268
Query: 172 ------DANAKLPE--PKKEHRDGMAFNC----------EEAPLDVDIKNGGRVVLLNTK 213
D + + P K R+G+ + + D+ G V +
Sbjct: 269 PQCKGKDKHCQRPRGSQSKSRRNGIDETICTMRLRHNIGQTSSPDIYNPQAGSVTTATSL 328
Query: 214 NLPLVGEVGCGADLVRLDGKAMCSPGFSCDSALQVTYIVRGSGRAQIVGPDGKRVLETTV 273
+ P + + A+ L AM P ++ + A + Y + G Q+V +G+RV + +
Sbjct: 329 DFPALSWLRLSAEFGSLRKNAMFVPHYNLN-ANSIIYALNGRALIQVVNCNGERVFDGEL 387
Query: 274 KAGNLFIVPRFYVVSKIADPDGLAWFSIITTPNPIFTHLAGSIGTWKSLSPSVLEAAFNV 333
+ G + IVP+ +VV+ + D + S T P+ LAG+ +L V++ FN+
Sbjct: 388 QEGRVLIVPQNFVVAARSQSDNFEYVSFKTNDTPMIGTLAGANSLLNALPEEVIQHTFNL 447
Query: 334 PSDVEKQFRSKRANEAIFFPPP 355
S +Q K N F PP
Sbjct: 448 KSQQARQI--KNNNPFKFLVPP 467
>pdb|1UCX|A Chain A, Crystal Structure Of Proglycinin C12g Mutant
pdb|1UCX|B Chain B, Crystal Structure Of Proglycinin C12g Mutant
pdb|1UCX|C Chain C, Crystal Structure Of Proglycinin C12g Mutant
Length = 476
Score = 103 bits (258), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 96/442 (21%), Positives = 165/442 (37%), Gaps = 108/442 (24%)
Query: 18 GGSYHAWCPNELPMLRQGNIGAAKLALEKNGFALPHYCDSARVAYVLQGSGVAGIVLP-- 75
GG W PN P G + ++ L +N P Y + + Y+ QG G+ G++ P
Sbjct: 30 GGLIETWNPNNKPFQCAG-VALSRCTLNRNALRRPSYTNGPQEIYIQQGKGIFGMIYPGC 88
Query: 76 --------------------EKEEKVVAIKKGDGIALPFGVVTWWYNKEDTELVVLFLGD 115
++ +K+ ++GD IA+P GV W YN EDT +V + + D
Sbjct: 89 PSTFEEPQQPQQRGQSSRPQDRHQKIYNFREGDLIAVPTGVAWWMYNNEDTPVVAVSIID 148
Query: 116 TSK---------------GHKAGEFTNFFL-----------------TGANGIFTGFSTE 143
T+ G++ EF + I +GF+ E
Sbjct: 149 TNSLENQLDQMPRRFYLAGNQEQEFLKYQQEQGGHQSQKGKHQQEEENEGGSILSGFTLE 208
Query: 144 FVSRAWDLDENTVKTLVGKQTGK---GIVKL----------------------------- 171
F+ A+ +D+ K L G+ G+ IV +
Sbjct: 209 FLEHAFSVDKQIAKNLQGENEGEDKGAIVTVKGGLSVIKPPTDEQQQRPQEEEEEEEDEK 268
Query: 172 ------DANAKLPE--PKKEHRDGMAFNC----------EEAPLDVDIKNGGRVVLLNTK 213
D + + P K R+G+ + + D+ G V +
Sbjct: 269 PQCKGKDKHCQRPRGSQSKSRRNGIDETICTMRLRHNIGQTSSPDIYNPQAGSVTTATSL 328
Query: 214 NLPLVGEVGCGADLVRLDGKAMCSPGFSCDSALQVTYIVRGSGRAQIVGPDGKRVLETTV 273
+ P + + A+ L AM P ++ + A + Y + G Q+V +G+RV + +
Sbjct: 329 DFPALSWLRLSAEFGSLRKNAMFVPHYNLN-ANSIIYALNGRALIQVVNCNGERVFDGEL 387
Query: 274 KAGNLFIVPRFYVVSKIADPDGLAWFSIITTPNPIFTHLAGSIGTWKSLSPSVLEAAFNV 333
+ G + IVP+ +VV+ + D + S T P+ LAG+ +L V++ FN+
Sbjct: 388 QEGRVLIVPQNFVVAARSQSDNFEYVSFKTNDTPMIGTLAGANSLLNALPEEVIQHTFNL 447
Query: 334 PSDVEKQFRSKRANEAIFFPPP 355
S +Q K N F PP
Sbjct: 448 KSQQARQI--KNNNPFKFLVPP 467
>pdb|1UD1|A Chain A, Crystal Structure Of Proglycinin Mutant C88s
pdb|1UD1|B Chain B, Crystal Structure Of Proglycinin Mutant C88s
pdb|1UD1|C Chain C, Crystal Structure Of Proglycinin Mutant C88s
Length = 476
Score = 103 bits (258), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 96/442 (21%), Positives = 165/442 (37%), Gaps = 108/442 (24%)
Query: 18 GGSYHAWCPNELPMLRQGNIGAAKLALEKNGFALPHYCDSARVAYVLQGSGVAGIVLP-- 75
GG W PN P G + ++ L +N P Y + + Y+ QG G+ G++ P
Sbjct: 30 GGLIETWNPNNKPFQCAG-VALSRCTLNRNALRRPSYTNGPQEIYIQQGKGIFGMIYPGS 88
Query: 76 --------------------EKEEKVVAIKKGDGIALPFGVVTWWYNKEDTELVVLFLGD 115
++ +K+ ++GD IA+P GV W YN EDT +V + + D
Sbjct: 89 PSTFEEPQQPQQRGQSSRPQDRHQKIYNFREGDLIAVPTGVAWWMYNNEDTPVVAVSIID 148
Query: 116 TSK---------------GHKAGEFTNFFL-----------------TGANGIFTGFSTE 143
T+ G++ EF + I +GF+ E
Sbjct: 149 TNSLENQLDQMPRRFYLAGNQEQEFLKYQQEQGGHQSQKGKHQQEEENEGGSILSGFTLE 208
Query: 144 FVSRAWDLDENTVKTLVGKQTGK---GIVKL----------------------------- 171
F+ A+ +D+ K L G+ G+ IV +
Sbjct: 209 FLEHAFSVDKQIAKNLQGENEGEDKGAIVTVKGGLSVIKPPTDEQQQRPQEEEEEEEDEK 268
Query: 172 ------DANAKLPE--PKKEHRDGMAFNC----------EEAPLDVDIKNGGRVVLLNTK 213
D + + P K R+G+ + + D+ G V +
Sbjct: 269 PQCKGKDKHCQRPRGSQSKSRRNGIDETICTMRLRHNIGQTSSPDIYNPQAGSVTTATSL 328
Query: 214 NLPLVGEVGCGADLVRLDGKAMCSPGFSCDSALQVTYIVRGSGRAQIVGPDGKRVLETTV 273
+ P + + A+ L AM P ++ + A + Y + G Q+V +G+RV + +
Sbjct: 329 DFPALSWLRLSAEFGSLRKNAMFVPHYNLN-ANSIIYALNGRALIQVVNCNGERVFDGEL 387
Query: 274 KAGNLFIVPRFYVVSKIADPDGLAWFSIITTPNPIFTHLAGSIGTWKSLSPSVLEAAFNV 333
+ G + IVP+ +VV+ + D + S T P+ LAG+ +L V++ FN+
Sbjct: 388 QEGRVLIVPQNFVVAARSQSDNFEYVSFKTNDTPMIGTLAGANSLLNALPEEVIQHTFNL 447
Query: 334 PSDVEKQFRSKRANEAIFFPPP 355
S +Q K N F PP
Sbjct: 448 KSQQARQI--KNNNPFKFLVPP 467
>pdb|3KGL|A Chain A, Crystal Structure Of Procruciferin, 11s Globulin From
Brassica Napus
pdb|3KGL|B Chain B, Crystal Structure Of Procruciferin, 11s Globulin From
Brassica Napus
pdb|3KGL|C Chain C, Crystal Structure Of Procruciferin, 11s Globulin From
Brassica Napus
pdb|3KGL|D Chain D, Crystal Structure Of Procruciferin, 11s Globulin From
Brassica Napus
pdb|3KGL|E Chain E, Crystal Structure Of Procruciferin, 11s Globulin From
Brassica Napus
pdb|3KGL|F Chain F, Crystal Structure Of Procruciferin, 11s Globulin From
Brassica Napus
Length = 466
Score = 80.9 bits (198), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 71/294 (24%), Positives = 124/294 (42%), Gaps = 38/294 (12%)
Query: 76 EKEEKVVAIKKGDGIALPFGVVTWWYNKEDTELVVLFLGDTSKGHKAGEFTN---FFLTG 132
+ +KV I+ GD IA GV W+YN + LV++ + D + H+ N F+L G
Sbjct: 141 DMHQKVEHIRTGDTIATHPGVAQWFYNDGNQPLVIVSVLDLA-SHQNQLDRNPRPFYLAG 199
Query: 133 AN----------------GIFTGFSTEFVSRAWDLDENTVKTLVGKQTGKG-IVKLDANA 175
N I GF+ E +++A+ +D T + L +Q +G I+++
Sbjct: 200 NNPQGQVWIEGREQQPQKNILNGFTPEVLAKAFKIDVRTAQQLQNQQDNRGNIIRVQGPF 259
Query: 176 KLPEPK------KEHRDGM-----AFNCEEA---PLDVDIKNG--GRVVLLNTKNLPLVG 219
+ P +E +G+ + C + P + D+ G + LN+ +LP++
Sbjct: 260 SVIRPPLRSQRPQEEVNGLEETICSARCTDNLDDPSNADVYKPQLGYISTLNSYDLPILR 319
Query: 220 EVGCGADLVRLDGKAMCSPGFSCDSALQVTYIVRGSGRAQIVGPDGKRVLETTVKAGNLF 279
+ A + AM P ++ + A V Y+ G Q+V +G RV + V G L
Sbjct: 320 FLRLSALRGSIRQNAMVLPQWNAN-ANAVLYVTDGEAHVQVVNDNGDRVFDGQVSQGQLL 378
Query: 280 IVPRFYVVSKIADPDGLAWFSIITTPNPIFTHLAGSIGTWKSLSPSVLEAAFNV 333
+P+ + V K A + W T N LAG + L V+ + +
Sbjct: 379 SIPQGFSVVKRATSEQFRWIEFKTNANAQINTLAGRTSVLRGLPLEVISNGYQI 432
Score = 35.8 bits (81), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 17/64 (26%), Positives = 30/64 (46%), Gaps = 1/64 (1%)
Query: 12 QVYGGNGGSYHAWCPNELPMLRQGNIGAAKLALEKNGFALPHYCDSARVAYVLQGSGVAG 71
V G W + P LR + + +E G LP + +A++++V +G G+ G
Sbjct: 19 HVLKAEAGRIEVW-DHHAPQLRCSGVSFVRYIIESKGLYLPSFFSTAKLSFVAKGEGLMG 77
Query: 72 IVLP 75
V+P
Sbjct: 78 RVVP 81
>pdb|3KSC|A Chain A, Crystal Structure Of Pea Prolegumin, An 11s Seed Globulin
From Pisum Sativum L.
pdb|3KSC|B Chain B, Crystal Structure Of Pea Prolegumin, An 11s Seed Globulin
From Pisum Sativum L.
pdb|3KSC|C Chain C, Crystal Structure Of Pea Prolegumin, An 11s Seed Globulin
From Pisum Sativum L.
pdb|3KSC|D Chain D, Crystal Structure Of Pea Prolegumin, An 11s Seed Globulin
From Pisum Sativum L.
pdb|3KSC|E Chain E, Crystal Structure Of Pea Prolegumin, An 11s Seed Globulin
From Pisum Sativum L.
pdb|3KSC|F Chain F, Crystal Structure Of Pea Prolegumin, An 11s Seed Globulin
From Pisum Sativum L
Length = 496
Score = 74.7 bits (182), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 53/221 (23%), Positives = 92/221 (41%), Gaps = 52/221 (23%)
Query: 18 GGSYHAWCPNELPMLRQGNIGAAKLALEKNGFALPHYCDSARVAYVLQGSGVAGIVLP-- 75
GG W PN R + ++ L++N P+Y ++ + ++ QG+G G+V P
Sbjct: 28 GGLIETWNPNN-KQFRCAGVALSRATLQRNALRRPYYSNAPQEIFIQQGNGYFGMVFPGC 86
Query: 76 -------------------EKEEKVVAIKKGDGIALPFGVVTWWYNKEDTELVVLFLGDT 116
++ +KV ++GD IA+P G+V W YN +DT ++ + L D
Sbjct: 87 PETFEEPQESEQGEGRRYRDRHQKVNRFREGDIIAVPTGIVFWMYNDQDTPVIAVSLTDI 146
Query: 117 SKGHK-----------AGEFTNFFL-------------TGANGIFTGFSTEFVSRAWDLD 152
+ AG FL N IF+GF +F+ A++++
Sbjct: 147 RSSNNQLDQMPRRFYLAGNHEQEFLQYQHQQGGKQEQENEGNNIFSGFKRDFLEDAFNVN 206
Query: 153 ENTVKTLVGKQTGK---GIVKLDANAKL---PEPKKEHRDG 187
+ V L G+ + IVK+ + PE + H+ G
Sbjct: 207 RHIVDRLQGRNEDEEKGAIVKVKGGLSIISPPEKQARHQRG 247
Score = 57.4 bits (137), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 38/146 (26%), Positives = 70/146 (47%), Gaps = 3/146 (2%)
Query: 200 DIKN--GGRVVLLNTKNLPLVGEVGCGADLVRLDGKAMCSPGFSCDSALQVTYIVRGSGR 257
DI N GR+ + + +LP++ + A+ L AM P ++ + A + Y ++G R
Sbjct: 333 DIYNPEAGRIKTVTSLDLPVLRWLKLSAEHGSLHKNAMFVPHYNLN-ANSIIYALKGRAR 391
Query: 258 AQIVGPDGKRVLETTVKAGNLFIVPRFYVVSKIADPDGLAWFSIITTPNPIFTHLAGSIG 317
Q+V +G V + ++AG VP+ Y V+ + D ++ + T LAG+
Sbjct: 392 LQVVNCNGNTVFDGELEAGRALTVPQNYAVAAKSLSDRFSYVAFKTNDRAGIARLAGTSS 451
Query: 318 TWKSLSPSVLEAAFNVPSDVEKQFRS 343
+L V+ A FN+ + +Q +S
Sbjct: 452 VINNLPLDVVAATFNLQRNEARQLKS 477
Score = 33.1 bits (74), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 18/74 (24%), Positives = 34/74 (45%), Gaps = 1/74 (1%)
Query: 1 MEIDLTPKLAKQVYGGNGGSYHAWCPNELPMLRQGNIGAAKLALEKNGFALPHY-CDSAR 59
+ +++ P + +Y G +LP+LR + A +L KN +PHY ++
Sbjct: 322 LRLNIGPSSSPDIYNPEAGRIKTVTSLDLPVLRWLKLSAEHGSLHKNAMFVPHYNLNANS 381
Query: 60 VAYVLQGSGVAGIV 73
+ Y L+G +V
Sbjct: 382 IIYALKGRARLQVV 395
>pdb|3C3V|A Chain A, Crystal Structure Of Peanut Major Allergen Ara H 3
Length = 510
Score = 62.4 bits (150), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 39/158 (24%), Positives = 73/158 (46%), Gaps = 3/158 (1%)
Query: 198 DVDIKNGGRVVLLNTKNLPLVGEVGCGADLVRLDGKAMCSPGFSCDSALQVTYIVRGSGR 257
D+ G + N NL ++ +G A+ L A+ P ++ + A + Y +RG
Sbjct: 347 DIYNPQAGSLKTANELNLLILRWLGLSAEYGNLYRNALFVPHYNTN-AHSIIYALRGRAH 405
Query: 258 AQIVGPDGKRVLETTVKAGNLFIVPRFYVVSKIADPDGLAWFSIITTPNPIFTHLAGSIG 317
Q+V +G RV + ++ G++ +VP+ + V+ + D + + T P +LAG
Sbjct: 406 VQVVDSNGNRVYDEELQEGHVLVVPQNFAVAGKSQSDNFEYVAFKTDSRPSIANLAGENS 465
Query: 318 TWKSLSPSVLEAAFNVPSDVEKQFRSKRANEAIFFPPP 355
+L V+ ++ +P + +Q K N FF PP
Sbjct: 466 VIDNLPEEVVANSYGLPREQARQL--KNNNPFKFFVPP 501
Score = 53.1 bits (126), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 34/135 (25%), Positives = 53/135 (39%), Gaps = 36/135 (26%)
Query: 18 GGSYHAWCPNELPMLRQGNIGAAKLALEKNGFALPHYCDSARVAYVLQGSGVAGIVLP-- 75
GG W PN G + ++L L +N P Y ++ + ++ QG G G++ P
Sbjct: 30 GGYIETWNPNNQEFECAG-VALSRLVLRRNALRRPFYSNAPQEIFIQQGRGYFGLIFPGC 88
Query: 76 ---------------------------------EKEEKVVAIKKGDGIALPFGVVTWWYN 102
+ +KV +GD IA+P GV W YN
Sbjct: 89 PSTYEEPAQQGRRYQSQRPPRRLQEEDQSQQQQDSHQKVHRFNEGDLIAVPTGVAFWLYN 148
Query: 103 KEDTELVVLFLGDTS 117
DT++V + L DT+
Sbjct: 149 DHDTDVVAVSLTDTN 163
>pdb|2D5F|A Chain A, Crystal Structure Of Recombinant Soybean Proglycinin A3b4
Subunit, Its Comparison With Mature Glycinin A3b4
Subunit, Responsible For Hexamer Assembly
pdb|2D5F|B Chain B, Crystal Structure Of Recombinant Soybean Proglycinin A3b4
Subunit, Its Comparison With Mature Glycinin A3b4
Subunit, Responsible For Hexamer Assembly
pdb|2D5H|A Chain A, Crystal Structure Of Recombinant Soybean Proglycinin A3b4
Subunit, Its Comparison With Mature Glycinin A3b4
Subunit, Responsible For Hexamer Assembly
pdb|2D5H|B Chain B, Crystal Structure Of Recombinant Soybean Proglycinin A3b4
Subunit, Its Comparison With Mature Glycinin A3b4
Subunit, Responsible For Hexamer Assembly
pdb|2D5H|C Chain C, Crystal Structure Of Recombinant Soybean Proglycinin A3b4
Subunit, Its Comparison With Mature Glycinin A3b4
Subunit, Responsible For Hexamer Assembly
pdb|2D5H|D Chain D, Crystal Structure Of Recombinant Soybean Proglycinin A3b4
Subunit, Its Comparison With Mature Glycinin A3b4
Subunit, Responsible For Hexamer Assembly
pdb|2D5H|E Chain E, Crystal Structure Of Recombinant Soybean Proglycinin A3b4
Subunit, Its Comparison With Mature Glycinin A3b4
Subunit, Responsible For Hexamer Assembly
pdb|2D5H|F Chain F, Crystal Structure Of Recombinant Soybean Proglycinin A3b4
Subunit, Its Comparison With Mature Glycinin A3b4
Subunit, Responsible For Hexamer Assembly
Length = 493
Score = 62.0 bits (149), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 39/149 (26%), Positives = 72/149 (48%), Gaps = 6/149 (4%)
Query: 196 PLDVDIKN--GGRVVLLNTKNLPLVGEVGCGADLVRLDGKAMCSPGFSCDSALQVTYIVR 253
P D N GR+ LN+ LP + + G A V L + SP ++ + A V Y+ R
Sbjct: 338 PSRADFYNPKAGRISTLNSLTLPALRQFGLSAQYVVLYRNGIYSPHWNLN-ANSVIYVTR 396
Query: 254 GSGRAQIVGPDGKRVLETTVKAGNLFIVPRFYVVSKIADPDGLAWFSIITTPNPIFTHLA 313
G GR ++V G V + ++ G L +VP+ +VV++ GL + T N + +++
Sbjct: 397 GKGRVRVVNXQGNAVFDGELRRGQLLVVPQNFVVAEQGGEQGLEYVVFKTHHNAVSSYIK 456
Query: 314 GSIGTWKSLSPSVLEAAFNVPSDVEKQFR 342
++++ VL ++N+ +Q +
Sbjct: 457 ---DVFRAIPSEVLSNSYNLGQSQVRQLK 482
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 50/231 (21%), Positives = 82/231 (35%), Gaps = 74/231 (32%)
Query: 18 GGSYHAWCPNELPMLRQGNIGAAKLALEKNGFALPHYCDSARVAYVLQGSGVAGIVLP-- 75
GG W ++ P L+ + +K L +NG LP Y ++ V+QG G G P
Sbjct: 27 GGLIETWN-SQHPELQCAGVTVSKRTLNRNGLHLPSYSPYPQMIIVVQGKGAIGFAFPGC 85
Query: 76 -----------------------EKEEKVVAIKKGDGIALPFGVVTWWYNKEDTELVVLF 112
+ +K+ +GD + +P GV W YN D +V +
Sbjct: 86 PETFEKPQQQSSRRGSRSQQQLQDSHQKIRHFNEGDVLVIPPGVPYWTYNTGDEPVVAIS 145
Query: 113 LGDTSKGHKAGEFTN--------FFLTG-------------------------------- 132
L DTS F N F+L G
Sbjct: 146 LLDTSN------FNNQLDQNPRVFYLAGNPDIEHPETMQQQQQQKSHGGRKQGQHQQQEE 199
Query: 133 -ANGIFTGFSTEFVSRAWDLDENTVKTLVG-KQTGKGIVKLDANAKLPEPK 181
+ +GFS F++++++ +E+T + L K IV ++ + PK
Sbjct: 200 EGGSVLSGFSKHFLAQSFNTNEDTAEKLRSPDDERKQIVTVEGGLSVISPK 250
Score = 35.4 bits (80), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 33/135 (24%), Positives = 58/135 (42%), Gaps = 16/135 (11%)
Query: 29 LPMLRQGNIGAAKLALEKNGFALPHY-CDSARVAYVLQGSGVAGIVLPEKEEKVV---AI 84
LP LRQ + A + L +NG PH+ ++ V YV +G G +V + V +
Sbjct: 359 LPALRQFGLSAQYVVLYRNGIYSPHWNLNANSVIYVTRGKGRVRVV--NXQGNAVFDGEL 416
Query: 85 KKGDGIALPFGVVTWWYNKEDTELVVLFLGDTSKGHKAGEFTNFFLTGANGIFTGFSTEF 144
++G + +P V E V+F K H N + +F +E
Sbjct: 417 RRGQLLVVPQNFVVAEQGGEQGLEYVVF-----KTHH-----NAVSSYIKDVFRAIPSEV 466
Query: 145 VSRAWDLDENTVKTL 159
+S +++L ++ V+ L
Sbjct: 467 LSNSYNLGQSQVRQL 481
>pdb|1OD5|A Chain A, Crystal Structure Of Glycinin A3b4 Subunit Homohexamer
pdb|1OD5|B Chain B, Crystal Structure Of Glycinin A3b4 Subunit Homohexamer
Length = 492
Score = 61.2 bits (147), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 39/149 (26%), Positives = 72/149 (48%), Gaps = 6/149 (4%)
Query: 196 PLDVDIKN--GGRVVLLNTKNLPLVGEVGCGADLVRLDGKAMCSPGFSCDSALQVTYIVR 253
P D N GR+ LN+ LP + + G A V L + SP ++ + A V Y+ R
Sbjct: 337 PSRADFYNPKAGRISTLNSLTLPALRQFGLSAQYVVLYRNGIYSPHWNLN-ANSVIYVTR 395
Query: 254 GSGRAQIVGPDGKRVLETTVKAGNLFIVPRFYVVSKIADPDGLAWFSIITTPNPIFTHLA 313
G GR ++V G V + ++ G L +VP+ +VV++ GL + T N + +++
Sbjct: 396 GKGRVRVVNCQGNAVFDGELRRGQLLVVPQNFVVAEQGGEQGLEYVVFKTHHNAVSSYIK 455
Query: 314 GSIGTWKSLSPSVLEAAFNVPSDVEKQFR 342
++++ VL ++N+ +Q +
Sbjct: 456 ---DVFRAIPSEVLSNSYNLGQSQVRQLK 481
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 50/231 (21%), Positives = 82/231 (35%), Gaps = 74/231 (32%)
Query: 18 GGSYHAWCPNELPMLRQGNIGAAKLALEKNGFALPHYCDSARVAYVLQGSGVAGIVLP-- 75
GG W ++ P L+ + +K L +NG LP Y ++ V+QG G G P
Sbjct: 26 GGLIETWN-SQHPELQCAGVTVSKRTLNRNGLHLPSYSPYPQMIIVVQGKGAIGFAFPGC 84
Query: 76 -----------------------EKEEKVVAIKKGDGIALPFGVVTWWYNKEDTELVVLF 112
+ +K+ +GD + +P GV W YN D +V +
Sbjct: 85 PETFEKPQQQSSRRGSRSQQQLQDSHQKIRHFNEGDVLVIPPGVPYWTYNTGDEPVVAIS 144
Query: 113 LGDTSKGHKAGEFTN--------FFLTG-------------------------------- 132
L DTS F N F+L G
Sbjct: 145 LLDTSN------FNNQLDQNPRVFYLAGNPDIEHPETMQQQQQQKSHGGRKQGQHQQQEE 198
Query: 133 -ANGIFTGFSTEFVSRAWDLDENTVKTLVG-KQTGKGIVKLDANAKLPEPK 181
+ +GFS F++++++ +E+T + L K IV ++ + PK
Sbjct: 199 EGGSVLSGFSKHFLAQSFNTNEDTAEKLRSPDDERKQIVTVEGGLSVISPK 249
Score = 34.7 bits (78), Expect = 0.088, Method: Compositional matrix adjust.
Identities = 32/133 (24%), Positives = 57/133 (42%), Gaps = 12/133 (9%)
Query: 29 LPMLRQGNIGAAKLALEKNGFALPHY-CDSARVAYVLQGSGVAGIVLPEKEEKVVA-IKK 86
LP LRQ + A + L +NG PH+ ++ V YV +G G +V + +++
Sbjct: 358 LPALRQFGLSAQYVVLYRNGIYSPHWNLNANSVIYVTRGKGRVRVVNCQGNAVFDGELRR 417
Query: 87 GDGIALPFGVVTWWYNKEDTELVVLFLGDTSKGHKAGEFTNFFLTGANGIFTGFSTEFVS 146
G + +P V E V+F K H N + +F +E +S
Sbjct: 418 GQLLVVPQNFVVAEQGGEQGLEYVVF-----KTHH-----NAVSSYIKDVFRAIPSEVLS 467
Query: 147 RAWDLDENTVKTL 159
+++L ++ V+ L
Sbjct: 468 NSYNLGQSQVRQL 480
>pdb|1CAU|A Chain A, Determination Of Three Crystal Structures Of Canavalin By
Molecular Replacement
pdb|1CAV|A Chain A, The Three-Dimensional Structure Of Canavalin From Jack
Bean (Canavalia Ensiformis)
pdb|1CAW|A Chain A, Determination Of Three Crystal Structures Of Canavalin By
Molecular Replacement
pdb|1CAX|A Chain A, Determination Of Three Crystal Structures Of Canavalin By
Molecular Replacement
pdb|1CAX|C Chain C, Determination Of Three Crystal Structures Of Canavalin By
Molecular Replacement
pdb|1CAX|E Chain E, Determination Of Three Crystal Structures Of Canavalin By
Molecular Replacement
Length = 181
Score = 44.7 bits (104), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 28/127 (22%), Positives = 61/127 (48%), Gaps = 7/127 (5%)
Query: 47 NGFALPHYCDSARVAYVLQGSGVAGIVLPEKEEKVVAIKKGDGIALPFGVVTWWYNKEDT 106
N LPH+ DS + VL+G + +V P+ + + +GD I + G + N ++
Sbjct: 53 NTLLLPHHSDSDLLVLVLEGQAILVLVNPDGRD-TYKLDQGDAIKIQAGTPFYLINPDNN 111
Query: 107 E-LVVLFLGDTSKGHKAGEFTNFFLTGANGI---FTGFSTEFVSRAWDLDENTVKTLVGK 162
+ L +L T + + G +FFL+ + + FS F+ ++D + ++ + +
Sbjct: 112 QNLRILKFAITFR--RPGTVEDFFLSSTKRLPSYLSAFSKNFLEASYDSPYDEIEQTLLQ 169
Query: 163 QTGKGIV 169
+ +G++
Sbjct: 170 EEQEGVI 176
>pdb|2CAU|A Chain A, Canavalin From Jack Bean
pdb|2CAV|A Chain A, Canavalin From Jack Bean
Length = 445
Score = 44.7 bits (104), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 28/127 (22%), Positives = 61/127 (48%), Gaps = 7/127 (5%)
Query: 47 NGFALPHYCDSARVAYVLQGSGVAGIVLPEKEEKVVAIKKGDGIALPFGVVTWWYNKEDT 106
N LPH+ DS + VL+G + +V P+ + + +GD I + G + N ++
Sbjct: 96 NTLLLPHHSDSDLLVLVLEGQAILVLVNPDGRD-TYKLDQGDAIKIQAGTPFYLINPDNN 154
Query: 107 E-LVVLFLGDTSKGHKAGEFTNFFLTGANGI---FTGFSTEFVSRAWDLDENTVKTLVGK 162
+ L +L T + + G +FFL+ + + FS F+ ++D + ++ + +
Sbjct: 155 QNLRILKFAITFR--RPGTVEDFFLSSTKRLPSYLSAFSKNFLEASYDSPYDEIEQTLLQ 212
Query: 163 QTGKGIV 169
+ +G++
Sbjct: 213 EEQEGVI 219
>pdb|1DGR|A Chain A, Refined Crystal Structure Of Canavalin From Jack Bean
pdb|1DGR|B Chain B, Refined Crystal Structure Of Canavalin From Jack Bean
pdb|1DGR|C Chain C, Refined Crystal Structure Of Canavalin From Jack Bean
pdb|1DGW|A Chain A, Structure Of The Rhombohedral Crystal Of Canavalin From
Jack Bean
Length = 178
Score = 44.7 bits (104), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 28/127 (22%), Positives = 61/127 (48%), Gaps = 7/127 (5%)
Query: 47 NGFALPHYCDSARVAYVLQGSGVAGIVLPEKEEKVVAIKKGDGIALPFGVVTWWYNKEDT 106
N LPH+ DS + VL+G + +V P+ + + +GD I + G + N ++
Sbjct: 51 NTLLLPHHSDSDLLVLVLEGQAILVLVNPDGRD-TYKLDQGDAIKIQAGTPFYLINPDNN 109
Query: 107 E-LVVLFLGDTSKGHKAGEFTNFFLTGANGI---FTGFSTEFVSRAWDLDENTVKTLVGK 162
+ L +L T + + G +FFL+ + + FS F+ ++D + ++ + +
Sbjct: 110 QNLRILKFAITFR--RPGTVEDFFLSSTKRLPSYLSAFSKNFLEASYDSPYDEIEQTLLQ 167
Query: 163 QTGKGIV 169
+ +G++
Sbjct: 168 EEQEGVI 174
>pdb|1IPJ|A Chain A, Crystal Structures Of Recombinant And Native Soybean
Beta-Conglycinin Beta Homotrimers Complexes With
N-Acetyl-D-Glucosamine
pdb|1IPJ|B Chain B, Crystal Structures Of Recombinant And Native Soybean
Beta-Conglycinin Beta Homotrimers Complexes With
N-Acetyl-D-Glucosamine
pdb|1IPJ|C Chain C, Crystal Structures Of Recombinant And Native Soybean
Beta-Conglycinin Beta Homotrimers Complexes With
N-Acetyl-D-Glucosamine
Length = 416
Score = 38.1 bits (87), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 69/335 (20%), Positives = 131/335 (39%), Gaps = 44/335 (13%)
Query: 47 NGFALPHYCDSARVAYVLQGSGVAGIVLPEKEEKVVAIKKGDGIALPFGVVTWWYNKEDT 106
N LPH+ D+ + +VL G + +V + + + GD +P G + N D
Sbjct: 59 NTILLPHHADADFLLFVLSGRAILTLVNNDDRDS-YNLHPGDAQRIPAGTTYYLVNPHDH 117
Query: 107 E-LVVLFLGDTSKGHKAGEFTNFFLTGANG---IFTGFSTEFVSRAWDLD-ENTVKTLVG 161
+ L ++ L +K G + +FFL+ GFS + ++ + E + L+G
Sbjct: 118 QNLKIIKLA--IPVNKPGRYDDFFLSSTQAQQSYLQGFSHNILETSFHSEFEEINRVLLG 175
Query: 162 KQ-------------TGKGIVKLDANAKLPEPKKEHRDGMAFNCE-EAPLDVDIKNGGRV 207
++ + + I +L AK K + FN P+ + N G+
Sbjct: 176 EEEEQRQQEGVIVELSKEQIRQLSRRAKSSSRKTISSEDEPFNLRSRNPIYSN--NFGKF 233
Query: 208 VLLNTKNLPLVGEVGCGADLVRLDGKAMCSPGFSCDSALQVTYIVRGSGRAQIVG----- 262
+ + P + ++ V ++ A+ P F+ A+ + I G ++VG
Sbjct: 234 FEITPEKNPQLRDLDIFLSSVDINEGALLLPHFNS-KAIVILVINEGDANIELVGIKEQQ 292
Query: 263 --------PDGKRVLETTVKAGNLFIVPRFY--VVSKIADPDGLAWFSIITTPNPIFTHL 312
P + + ++F++P Y VV+ ++ + LA+ I N L
Sbjct: 293 QKQKQEEEPLEVQRYRAELSEDDVFVIPAAYPFVVNATSNLNFLAFG--INAENNQRNFL 350
Query: 313 AGSI-GTWKSLSPSVLEAAF-NVPSDVEKQFRSKR 345
AG + + V E AF DVE+ + +R
Sbjct: 351 AGEKDNVVRQIERQVQELAFPGSAQDVERLLKKQR 385
Score = 32.3 bits (72), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 18/62 (29%), Positives = 28/62 (45%), Gaps = 1/62 (1%)
Query: 13 VYGGNGGSYHAWCPNELPMLRQGNIGAAKLALEKNGFALPHYCDSARVAYVLQGSGVAGI 72
+Y N G + P + P LR +I + + + + LPH+ A V V+ G A I
Sbjct: 225 IYSNNFGKFFEITPEKNPQLRDLDIFLSSVDINEGALLLPHFNSKAIVILVI-NEGDANI 283
Query: 73 VL 74
L
Sbjct: 284 EL 285
>pdb|1UIJ|A Chain A, Crystal Structure Of Soybean Beta-Conglycinin Beta
Homotrimer (I122mK124W)
pdb|1UIJ|B Chain B, Crystal Structure Of Soybean Beta-Conglycinin Beta
Homotrimer (I122mK124W)
pdb|1UIJ|C Chain C, Crystal Structure Of Soybean Beta-Conglycinin Beta
Homotrimer (I122mK124W)
pdb|1UIJ|D Chain D, Crystal Structure Of Soybean Beta-Conglycinin Beta
Homotrimer (I122mK124W)
pdb|1UIJ|E Chain E, Crystal Structure Of Soybean Beta-Conglycinin Beta
Homotrimer (I122mK124W)
pdb|1UIJ|F Chain F, Crystal Structure Of Soybean Beta-Conglycinin Beta
Homotrimer (I122mK124W)
Length = 416
Score = 37.7 bits (86), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 69/335 (20%), Positives = 130/335 (38%), Gaps = 44/335 (13%)
Query: 47 NGFALPHYCDSARVAYVLQGSGVAGIVLPEKEEKVVAIKKGDGIALPFGVVTWWYNKEDT 106
N LPH+ D+ + +VL G + +V + + + GD +P G + N D
Sbjct: 59 NTILLPHHADADFLLFVLSGRAILTLVNNDDRDS-YNLHPGDAQRIPAGTTYYLVNPHDH 117
Query: 107 E-LVVLFLGDTSKGHKAGEFTNFFLTGANG---IFTGFSTEFVSRAWDLD-ENTVKTLVG 161
+ L +++L +K G + +FFL+ GFS + ++ + E + L G
Sbjct: 118 QNLKMIWLA--IPVNKPGRYDDFFLSSTQAQQSYLQGFSHNILETSFHSEFEEINRVLFG 175
Query: 162 -------------KQTGKGIVKLDANAKLPEPKKEHRDGMAFNCE-EAPLDVDIKNGGRV 207
+ + + I +L AK K + FN P+ + N G+
Sbjct: 176 EEEEQRQQEGVIVELSKEQIRQLSRRAKSSSRKTISSEDEPFNLRSRNPIYSN--NFGKF 233
Query: 208 VLLNTKNLPLVGEVGCGADLVRLDGKAMCSPGFSCDSALQVTYIVRGSGRAQIVG----- 262
+ + P + ++ V ++ A+ P F+ A+ + I G ++VG
Sbjct: 234 FEITPEKNPQLRDLDIFLSSVDINEGALLLPHFNS-KAIVILVINEGDANIELVGIKEQQ 292
Query: 263 --------PDGKRVLETTVKAGNLFIVPRFY--VVSKIADPDGLAWFSIITTPNPIFTHL 312
P + + ++F++P Y VV+ ++ + LA+ I N L
Sbjct: 293 QKQKQEEEPLEVQRYRAELSEDDVFVIPAAYPFVVNATSNLNFLAF--GINAENNQRNFL 350
Query: 313 AGSI-GTWKSLSPSVLEAAF-NVPSDVEKQFRSKR 345
AG + + V E AF DVE+ + +R
Sbjct: 351 AGEKDNVVRQIERQVQELAFPGSAQDVERLLKKQR 385
Score = 32.3 bits (72), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 18/62 (29%), Positives = 28/62 (45%), Gaps = 1/62 (1%)
Query: 13 VYGGNGGSYHAWCPNELPMLRQGNIGAAKLALEKNGFALPHYCDSARVAYVLQGSGVAGI 72
+Y N G + P + P LR +I + + + + LPH+ A V V+ G A I
Sbjct: 225 IYSNNFGKFFEITPEKNPQLRDLDIFLSSVDINEGALLLPHFNSKAIVILVI-NEGDANI 283
Query: 73 VL 74
L
Sbjct: 284 EL 285
>pdb|1IPK|A Chain A, Crystal Structures Of Recombinant And Native Soybean Beta-
Conglycinin Beta Homotrimers
pdb|1IPK|B Chain B, Crystal Structures Of Recombinant And Native Soybean Beta-
Conglycinin Beta Homotrimers
pdb|1IPK|C Chain C, Crystal Structures Of Recombinant And Native Soybean Beta-
Conglycinin Beta Homotrimers
Length = 416
Score = 37.4 bits (85), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 69/335 (20%), Positives = 130/335 (38%), Gaps = 44/335 (13%)
Query: 47 NGFALPHYCDSARVAYVLQGSGVAGIVLPEKEEKVVAIKKGDGIALPFGVVTWWYNKEDT 106
N LPH+ D+ + +VL G + +V + + + GD +P G + N D
Sbjct: 59 NTILLPHHADADFLLFVLSGRAILTLVNNDDRDS-YNLHPGDAQRIPAGTTYYLVNPHDH 117
Query: 107 E-LVVLFLGDTSKGHKAGEFTNFFLTGANG---IFTGFSTEFVSRAWDLD-ENTVKTLVG 161
+ L ++ L +K G + +FFL+ GFS + ++ + E + L G
Sbjct: 118 QNLKIIKLA--IPVNKPGRYDDFFLSSTQAQQSYLQGFSHNILETSFHSEFEEINRVLFG 175
Query: 162 KQ-------------TGKGIVKLDANAKLPEPKKEHRDGMAFNCE-EAPLDVDIKNGGRV 207
++ + + I +L AK K + FN P+ + N G+
Sbjct: 176 EEEEQRQQEGVIVELSKEQIRQLSRRAKSSSRKTISSEDEPFNLRSRNPIYSN--NFGKF 233
Query: 208 VLLNTKNLPLVGEVGCGADLVRLDGKAMCSPGFSCDSALQVTYIVRGSGRAQIVG----- 262
+ + P + ++ V ++ A+ P F+ A+ + I G ++VG
Sbjct: 234 FEITPEKNPQLRDLDIFLSSVDINEGALLLPHFNS-KAIVILVINEGDANIELVGIKEQQ 292
Query: 263 --------PDGKRVLETTVKAGNLFIVPRFY--VVSKIADPDGLAWFSIITTPNPIFTHL 312
P + + ++F++P Y VV+ ++ + LA+ I N L
Sbjct: 293 QKQKQEEEPLEVQRYRAELSEDDVFVIPAAYPFVVNATSNLNFLAFG--INAENNQRNFL 350
Query: 313 AGSI-GTWKSLSPSVLEAAF-NVPSDVEKQFRSKR 345
AG + + V E AF DVE+ + +R
Sbjct: 351 AGEKDNVVRQIERQVQELAFPGSAQDVERLLKKQR 385
Score = 32.3 bits (72), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 18/62 (29%), Positives = 28/62 (45%), Gaps = 1/62 (1%)
Query: 13 VYGGNGGSYHAWCPNELPMLRQGNIGAAKLALEKNGFALPHYCDSARVAYVLQGSGVAGI 72
+Y N G + P + P LR +I + + + + LPH+ A V V+ G A I
Sbjct: 225 IYSNNFGKFFEITPEKNPQLRDLDIFLSSVDINEGALLLPHFNSKAIVILVI-NEGDANI 283
Query: 73 VL 74
L
Sbjct: 284 EL 285
>pdb|2EA7|A Chain A, Crystal Structure Of Adzuki Bean 7s Globulin-1
pdb|2EA7|B Chain B, Crystal Structure Of Adzuki Bean 7s Globulin-1
pdb|2EA7|C Chain C, Crystal Structure Of Adzuki Bean 7s Globulin-1
Length = 434
Score = 32.7 bits (73), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 17/65 (26%), Positives = 31/65 (47%), Gaps = 1/65 (1%)
Query: 10 AKQVYGGNGGSYHAWCPNELPMLRQGNIGAAKLALEKNGFALPHYCDSARVAYVLQGSGV 69
+K +Y G ++ P + P L+ ++ + + +++ LPHY A V V+ G
Sbjct: 239 SKPIYSNKFGRWYEMTPEKNPQLKDLDVFISSVDMKEGALLLPHYSSKAIVIMVI-NEGE 297
Query: 70 AGIVL 74
A I L
Sbjct: 298 AKIEL 302
>pdb|2EAA|A Chain A, Crystal Structure Of Adzuki Bean 7s Globulin-3
pdb|2EAA|B Chain B, Crystal Structure Of Adzuki Bean 7s Globulin-3
pdb|2EAA|C Chain C, Crystal Structure Of Adzuki Bean 7s Globulin-3
Length = 433
Score = 32.0 bits (71), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 17/65 (26%), Positives = 31/65 (47%), Gaps = 1/65 (1%)
Query: 10 AKQVYGGNGGSYHAWCPNELPMLRQGNIGAAKLALEKNGFALPHYCDSARVAYVLQGSGV 69
+K +Y G ++ P + P L+ ++ + + +++ LPHY A V V+ G
Sbjct: 238 SKPIYSNKFGRWYEMTPEKNPQLKDLDVFISSVDMKEGALLLPHYNSKAIVIMVI-NEGE 296
Query: 70 AGIVL 74
A I L
Sbjct: 297 AKIEL 301
>pdb|2CV6|A Chain A, Crystal Structure Of 8salpha Globulin, The Major Seed
Storage Protein Of Mungbean
Length = 424
Score = 30.8 bits (68), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 18/64 (28%), Positives = 28/64 (43%), Gaps = 1/64 (1%)
Query: 11 KQVYGGNGGSYHAWCPNELPMLRQGNIGAAKLALEKNGFALPHYCDSARVAYVLQGSGVA 70
K +Y G + P + P LR ++ + +++ LPHY A V V+ G A
Sbjct: 235 KPIYSNKLGRWFEITPEKNPQLRDLDMFIRSVDMKEGSLLLPHYNSKAIVILVI-NEGKA 293
Query: 71 GIVL 74
I L
Sbjct: 294 NIEL 297
>pdb|1VR3|A Chain A, Crystal Structure Of Acireductone Dioxygenase (13543033)
From Mus Musculus At 2.06 A Resolution
Length = 191
Score = 30.4 bits (67), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 27/50 (54%), Gaps = 4/50 (8%)
Query: 49 FALPHYCDSARVAYVLQGSGVAGIVLPEKEEKVVAI--KKGDGIALPFGV 96
F H + Y+L+GSG + +KE+K + I +KGD I LP G+
Sbjct: 96 FFEEHLHLDEEIRYILEGSGYFDVR--DKEDKWIRISXEKGDXITLPAGI 143
>pdb|3HT2|A Chain A, Zink Containing Polyketide Cyclase Remf From
Streptomyces Resistomycificus
pdb|3HT2|C Chain C, Zink Containing Polyketide Cyclase Remf From
Streptomyces Resistomycificus
Length = 145
Score = 29.3 bits (64), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 17/56 (30%), Positives = 29/56 (51%), Gaps = 3/56 (5%)
Query: 40 AKLALEKNGFALPHYCDSARVAYVLQGSGVAGIVLPEKEEKVVAIKKGDGIALPFG 95
+ + NG PH+ + YVL+GS G+VLP++ + + G+ I +P G
Sbjct: 42 TEFEVSPNGSTPPHFHEWEHEIYVLEGS--XGLVLPDQ-GRTEEVGPGEAIFIPRG 94
>pdb|3HT1|A Chain A, 1.2a Structure Of The Polyketide Cyclase Remf From
Streptomyces Resistomycificus
Length = 145
Score = 29.3 bits (64), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 17/56 (30%), Positives = 29/56 (51%), Gaps = 3/56 (5%)
Query: 40 AKLALEKNGFALPHYCDSARVAYVLQGSGVAGIVLPEKEEKVVAIKKGDGIALPFG 95
+ + NG PH+ + YVL+GS G+VLP++ + + G+ I +P G
Sbjct: 42 TEFEVSPNGSTPPHFHEWEHEIYVLEGS--MGLVLPDQ-GRTEEVGPGEAIFIPRG 94
>pdb|3JPX|A Chain A, Eed: A Novel Histone Trimethyllysine Binder Within The
Eed-Ezh2 Polycomb Complex
pdb|3JZG|A Chain A, Structure Of Eed In Complex With H3k27me3
pdb|3JZH|A Chain A, Eed-H3k79me3
Length = 402
Score = 27.7 bits (60), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 25/96 (26%), Positives = 37/96 (38%), Gaps = 8/96 (8%)
Query: 80 KVVAIKKGDGIALPFGVVTWWYNKEDTELVVLFLGDTS----KGHKAGEFTNFFLTGANG 135
K V K D FGV W++KE LV +G + H GE +
Sbjct: 44 KCVNSLKEDHNQPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQGEIRLL----QSY 99
Query: 136 IFTGFSTEFVSRAWDLDENTVKTLVGKQTGKGIVKL 171
+ F + AW D NT L+ +GI+++
Sbjct: 100 VDADADENFYTCAWTYDSNTSHPLLAVAGSRGIIRI 135
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.138 0.421
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,700,077
Number of Sequences: 62578
Number of extensions: 533630
Number of successful extensions: 1319
Number of sequences better than 100.0: 33
Number of HSP's better than 100.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 16
Number of HSP's that attempted gapping in prelim test: 1252
Number of HSP's gapped (non-prelim): 66
length of query: 356
length of database: 14,973,337
effective HSP length: 100
effective length of query: 256
effective length of database: 8,715,537
effective search space: 2231177472
effective search space used: 2231177472
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 52 (24.6 bits)