Query 018395
Match_columns 356
No_of_seqs 242 out of 2100
Neff 7.7
Searched_HMMs 46136
Date Fri Mar 29 08:39:44 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018395.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/018395hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00212 glutelin; Provisional 100.0 7.4E-74 1.6E-78 567.0 37.9 349 4-355 48-479 (493)
2 TIGR03404 bicupin_oxalic bicup 100.0 1.9E-51 4.1E-56 399.2 33.9 309 17-345 49-363 (367)
3 PF00190 Cupin_1: Cupin; Inte 99.9 4.7E-26 1E-30 194.5 14.3 134 190-338 1-143 (144)
4 PF00190 Cupin_1: Cupin; Inte 99.9 9.5E-25 2.1E-29 186.4 14.2 135 5-156 1-143 (144)
5 PLN00212 glutelin; Provisional 99.9 1.4E-23 3.1E-28 208.8 17.6 162 1-169 310-475 (493)
6 TIGR03404 bicupin_oxalic bicup 99.9 2.8E-23 6E-28 202.2 16.5 139 14-163 224-363 (367)
7 smart00835 Cupin_1 Cupin. This 99.9 2.3E-22 5E-27 172.1 17.4 141 10-156 3-145 (146)
8 smart00835 Cupin_1 Cupin. This 99.9 1.7E-21 3.6E-26 166.8 16.8 138 200-338 7-145 (146)
9 COG2140 Thermophilic glucose-6 99.8 6E-19 1.3E-23 155.7 12.9 190 141-345 2-200 (209)
10 TIGR03214 ura-cupin putative a 99.7 8E-14 1.7E-18 130.2 25.9 194 35-303 56-253 (260)
11 PRK11171 hypothetical protein; 99.7 2.9E-14 6.3E-19 133.7 22.6 197 34-305 58-260 (266)
12 COG2140 Thermophilic glucose-6 99.7 1.2E-15 2.5E-20 134.9 12.0 128 18-159 66-196 (209)
13 PF07883 Cupin_2: Cupin domain 99.3 1.1E-11 2.3E-16 92.2 9.3 69 41-114 2-71 (71)
14 COG0662 {ManC} Mannose-6-phosp 99.3 1.9E-11 4.1E-16 102.1 11.2 79 34-117 33-112 (127)
15 PRK04190 glucose-6-phosphate i 99.3 3.7E-11 8E-16 106.8 13.1 87 30-116 61-156 (191)
16 TIGR02272 gentisate_1_2 gentis 99.3 1.2E-10 2.5E-15 111.8 15.3 232 36-307 80-323 (335)
17 PRK13290 ectC L-ectoine syntha 99.2 9.4E-11 2E-15 97.5 11.2 77 35-116 33-109 (125)
18 COG3837 Uncharacterized conser 99.2 9.7E-11 2.1E-15 98.6 9.2 78 35-117 40-121 (161)
19 COG1917 Uncharacterized conser 99.2 1.6E-10 3.5E-15 96.8 10.5 81 31-116 37-118 (131)
20 PF01050 MannoseP_isomer: Mann 99.1 4.3E-09 9.3E-14 90.2 14.5 89 16-116 49-138 (151)
21 COG3435 Gentisate 1,2-dioxygen 99.0 5.3E-09 1.1E-13 96.7 13.9 236 30-307 80-335 (351)
22 TIGR03214 ura-cupin putative a 99.0 3.7E-09 8E-14 98.9 12.8 75 36-115 178-253 (260)
23 PF07883 Cupin_2: Cupin domain 99.0 3.1E-09 6.7E-14 78.8 9.3 69 227-302 2-71 (71)
24 PRK04190 glucose-6-phosphate i 99.0 6.4E-09 1.4E-13 92.5 12.7 86 218-305 63-157 (191)
25 PRK15460 cpsB mannose-1-phosph 99.0 4.2E-09 9E-14 106.2 11.5 78 34-116 382-460 (478)
26 TIGR01479 GMP_PMI mannose-1-ph 99.0 7.5E-09 1.6E-13 104.7 13.3 89 16-116 362-451 (468)
27 PRK09943 DNA-binding transcrip 99.0 6.9E-09 1.5E-13 92.2 11.3 76 35-115 105-181 (185)
28 COG4101 Predicted mannose-6-ph 98.9 5.1E-09 1.1E-13 83.9 9.2 79 35-115 44-123 (142)
29 PRK11171 hypothetical protein; 98.8 4.9E-08 1.1E-12 91.7 13.1 75 36-115 183-258 (266)
30 PF02041 Auxin_BP: Auxin bindi 98.8 7.2E-08 1.6E-12 80.5 11.6 83 35-117 42-129 (167)
31 PF06560 GPI: Glucose-6-phosph 98.8 7.4E-08 1.6E-12 84.7 11.7 87 30-116 43-146 (182)
32 PRK13290 ectC L-ectoine syntha 98.8 8E-08 1.7E-12 79.9 10.7 81 221-308 33-113 (125)
33 COG0662 {ManC} Mannose-6-phosp 98.7 1.6E-07 3.5E-12 78.4 9.4 78 222-306 35-113 (127)
34 COG1917 Uncharacterized conser 98.7 1.9E-07 4.2E-12 78.1 9.9 79 219-304 39-118 (131)
35 PF11699 CENP-C_C: Mif2/CENP-C 98.5 1.5E-06 3.2E-11 67.2 9.8 73 36-113 11-84 (85)
36 COG3837 Uncharacterized conser 98.5 7.2E-07 1.6E-11 75.4 8.3 82 216-306 37-122 (161)
37 PRK13264 3-hydroxyanthranilate 98.5 4.7E-07 1E-11 78.8 7.3 61 44-105 41-101 (177)
38 COG4297 Uncharacterized protei 98.4 5E-07 1.1E-11 74.4 6.4 69 231-303 50-119 (163)
39 TIGR03037 anthran_nbaC 3-hydro 98.4 1.9E-06 4.2E-11 73.9 8.8 65 41-106 31-96 (159)
40 COG4101 Predicted mannose-6-ph 98.3 5.5E-06 1.2E-10 66.7 8.8 84 222-309 45-129 (142)
41 PF01050 MannoseP_isomer: Mann 98.3 6.3E-06 1.4E-10 70.8 9.8 75 222-303 62-137 (151)
42 PF03079 ARD: ARD/ARD' family; 98.3 1E-05 2.2E-10 69.8 10.8 67 49-115 84-150 (157)
43 PRK15457 ethanolamine utilizat 98.2 1.3E-05 2.7E-10 72.6 11.1 74 34-117 154-228 (233)
44 TIGR01479 GMP_PMI mannose-1-ph 98.2 5.5E-06 1.2E-10 84.0 9.6 76 222-304 375-451 (468)
45 PF06339 Ectoine_synth: Ectoin 98.2 3.7E-05 8.1E-10 62.9 11.9 79 34-117 32-110 (126)
46 PF14499 DUF4437: Domain of un 98.2 1.6E-05 3.4E-10 73.5 11.0 210 35-302 34-244 (251)
47 PF02311 AraC_binding: AraC-li 98.2 7E-06 1.5E-10 67.4 7.4 66 46-116 12-77 (136)
48 PF06560 GPI: Glucose-6-phosph 98.1 2.3E-05 4.9E-10 69.1 10.0 70 236-305 69-147 (182)
49 PRK09943 DNA-binding transcrip 98.1 1.8E-05 3.8E-10 70.3 9.4 73 223-303 107-181 (185)
50 PF12973 Cupin_7: ChrR Cupin-l 98.1 1.3E-05 2.8E-10 62.8 7.5 66 35-111 22-87 (91)
51 PRK15460 cpsB mannose-1-phosph 98.1 1.4E-05 3E-10 81.0 9.4 76 222-304 384-460 (478)
52 COG1791 Uncharacterized conser 98.1 2.5E-05 5.5E-10 66.9 9.5 68 49-116 87-154 (181)
53 COG3257 GlxB Uncharacterized p 98.1 0.00054 1.2E-08 61.1 17.9 191 37-302 61-255 (264)
54 COG4297 Uncharacterized protei 98.0 2.2E-05 4.7E-10 64.9 6.6 67 44-113 49-117 (163)
55 TIGR02451 anti_sig_ChrR anti-s 97.9 2.9E-05 6.3E-10 70.6 7.9 71 36-115 126-196 (215)
56 TIGR03037 anthran_nbaC 3-hydro 97.9 4.2E-05 9.2E-10 65.7 7.3 52 238-291 41-92 (159)
57 PF05523 FdtA: WxcM-like, C-te 97.8 0.00033 7.1E-09 58.8 11.8 99 13-115 10-111 (131)
58 PRK13264 3-hydroxyanthranilate 97.8 6.1E-05 1.3E-09 65.7 7.5 66 231-301 42-107 (177)
59 PF03079 ARD: ARD/ARD' family; 97.8 0.00018 4E-09 62.1 10.0 68 235-305 84-152 (157)
60 PRK10371 DNA-binding transcrip 97.8 8.2E-05 1.8E-09 71.2 8.6 66 35-105 24-89 (302)
61 PRK15457 ethanolamine utilizat 97.8 0.00021 4.5E-09 64.8 10.1 70 222-302 156-225 (233)
62 PF05899 Cupin_3: Protein of u 97.7 0.00026 5.7E-09 53.2 8.2 60 36-101 6-65 (74)
63 PF06052 3-HAO: 3-hydroxyanthr 97.7 0.00043 9.4E-09 58.4 9.8 67 39-106 35-101 (151)
64 PF06249 EutQ: Ethanolamine ut 97.7 0.00029 6.4E-09 60.2 8.9 73 35-117 75-148 (152)
65 PF05523 FdtA: WxcM-like, C-te 97.7 0.00098 2.1E-08 55.9 11.9 96 202-302 13-110 (131)
66 PF11699 CENP-C_C: Mif2/CENP-C 97.6 0.00049 1.1E-08 53.2 8.5 71 222-299 11-82 (85)
67 PRK13501 transcriptional activ 97.6 0.00026 5.7E-09 67.0 8.1 56 45-105 26-81 (290)
68 PRK13500 transcriptional activ 97.6 0.00032 6.9E-09 67.3 8.8 61 40-105 51-111 (312)
69 PF02041 Auxin_BP: Auxin bindi 97.6 0.00098 2.1E-08 56.1 10.3 121 187-313 10-136 (167)
70 PF02311 AraC_binding: AraC-li 97.5 0.00029 6.2E-09 57.7 7.3 63 232-302 12-75 (136)
71 PF12973 Cupin_7: ChrR Cupin-l 97.5 0.00061 1.3E-08 53.2 8.7 65 222-299 23-87 (91)
72 PF06339 Ectoine_synth: Ectoin 97.5 0.0013 2.8E-08 53.9 10.3 80 219-305 31-110 (126)
73 PRK10296 DNA-binding transcrip 97.5 0.00065 1.4E-08 63.8 9.8 52 47-103 33-84 (278)
74 TIGR02272 gentisate_1_2 gentis 97.4 0.00052 1.1E-08 66.2 8.5 69 37-112 250-318 (335)
75 PRK13502 transcriptional activ 97.4 0.00054 1.2E-08 64.4 8.5 61 40-105 21-81 (282)
76 COG1791 Uncharacterized conser 97.3 0.0015 3.3E-08 56.2 9.3 69 235-306 87-156 (181)
77 PF05899 Cupin_3: Protein of u 97.3 0.00058 1.3E-08 51.3 6.1 58 223-289 7-64 (74)
78 TIGR02297 HpaA 4-hydroxyphenyl 97.3 0.00066 1.4E-08 63.9 7.3 61 46-111 32-93 (287)
79 COG4766 EutQ Ethanolamine util 97.3 0.002 4.3E-08 54.4 9.0 74 35-117 98-171 (176)
80 KOG2107 Uncharacterized conser 97.2 0.00061 1.3E-08 58.1 5.3 58 49-106 85-142 (179)
81 PRK13503 transcriptional activ 97.2 0.00064 1.4E-08 63.7 5.9 55 45-104 23-77 (278)
82 COG3450 Predicted enzyme of th 97.1 0.0064 1.4E-07 49.6 10.4 61 34-101 42-103 (116)
83 PRK10296 DNA-binding transcrip 97.0 0.0034 7.3E-08 59.0 8.7 50 233-290 33-82 (278)
84 TIGR02451 anti_sig_ChrR anti-s 97.0 0.0031 6.7E-08 57.4 7.9 71 223-305 127-198 (215)
85 PRK10371 DNA-binding transcrip 96.8 0.0031 6.6E-08 60.3 7.0 59 225-291 28-86 (302)
86 PRK13500 transcriptional activ 96.8 0.0048 1E-07 59.2 8.2 54 232-293 57-110 (312)
87 PF13621 Cupin_8: Cupin-like d 96.8 0.0074 1.6E-07 55.2 9.0 65 40-104 133-233 (251)
88 PRK05341 homogentisate 1,2-dio 96.7 0.071 1.5E-06 52.9 15.9 207 52-288 148-373 (438)
89 PF14499 DUF4437: Domain of un 96.7 0.0048 1E-07 57.2 7.2 72 222-300 35-107 (251)
90 TIGR01221 rmlC dTDP-4-dehydror 96.7 0.035 7.6E-07 48.9 12.1 71 44-115 51-132 (176)
91 COG3435 Gentisate 1,2-dioxygen 96.7 0.0053 1.1E-07 57.5 7.1 92 17-115 242-333 (351)
92 TIGR00218 manA mannose-6-phosp 96.6 0.035 7.7E-07 53.1 12.9 60 223-292 235-294 (302)
93 COG1898 RfbC dTDP-4-dehydrorha 96.6 0.015 3.2E-07 51.0 9.2 97 12-113 17-130 (173)
94 PRK13501 transcriptional activ 96.6 0.0065 1.4E-07 57.5 7.7 48 236-291 31-78 (290)
95 PRK15131 mannose-6-phosphate i 96.6 0.058 1.3E-06 53.5 14.4 61 223-293 321-381 (389)
96 PF04209 HgmA: homogentisate 1 96.5 0.01 2.3E-07 58.8 8.3 201 54-289 142-365 (424)
97 TIGR02297 HpaA 4-hydroxyphenyl 96.4 0.0066 1.4E-07 57.1 6.3 52 233-291 33-84 (287)
98 PF13621 Cupin_8: Cupin-like d 96.4 0.021 4.6E-07 52.2 9.3 66 225-292 132-232 (251)
99 PF06249 EutQ: Ethanolamine ut 96.4 0.017 3.7E-07 49.4 7.9 70 222-302 76-145 (152)
100 PRK13502 transcriptional activ 96.3 0.015 3.2E-07 54.7 8.1 56 230-293 25-80 (282)
101 PF06052 3-HAO: 3-hydroxyanthr 96.3 0.011 2.5E-07 50.0 6.2 55 231-289 41-95 (151)
102 COG1898 RfbC dTDP-4-dehydrorha 96.3 0.087 1.9E-06 46.1 11.8 69 232-301 54-130 (173)
103 TIGR01015 hmgA homogentisate 1 96.2 0.14 3E-06 50.8 14.3 213 45-288 133-368 (429)
104 KOG2107 Uncharacterized conser 96.2 0.0084 1.8E-07 51.3 4.8 55 234-291 84-138 (179)
105 PF00908 dTDP_sugar_isom: dTDP 96.2 0.038 8.2E-07 48.7 9.2 73 42-115 48-132 (176)
106 COG3450 Predicted enzyme of th 96.1 0.013 2.9E-07 47.8 5.8 57 224-289 46-102 (116)
107 PF00908 dTDP_sugar_isom: dTDP 96.1 0.057 1.2E-06 47.6 10.1 71 231-302 51-131 (176)
108 TIGR01221 rmlC dTDP-4-dehydror 96.0 0.11 2.4E-06 45.7 11.3 71 231-301 52-130 (176)
109 PF08007 Cupin_4: Cupin superf 95.9 0.047 1E-06 52.7 9.3 73 224-298 114-205 (319)
110 COG3257 GlxB Uncharacterized p 95.8 0.07 1.5E-06 47.9 9.2 85 22-115 171-256 (264)
111 PF04962 KduI: KduI/IolB famil 95.8 1.7 3.8E-05 40.7 19.5 87 20-115 13-107 (261)
112 PRK13503 transcriptional activ 95.7 0.024 5.2E-07 53.0 6.5 54 231-292 23-76 (278)
113 PF08007 Cupin_4: Cupin superf 95.5 0.18 3.8E-06 48.7 11.5 66 39-104 115-200 (319)
114 PF05995 CDO_I: Cysteine dioxy 95.3 0.31 6.8E-06 42.8 11.6 77 35-111 73-159 (175)
115 COG4766 EutQ Ethanolamine util 94.9 0.18 4E-06 42.7 8.4 68 223-301 100-167 (176)
116 PLN02288 mannose-6-phosphate i 94.8 0.45 9.8E-06 47.2 12.2 57 223-285 334-390 (394)
117 PF12852 Cupin_6: Cupin 94.7 0.13 2.7E-06 45.4 7.4 46 57-105 35-80 (186)
118 PRK00924 5-keto-4-deoxyuronate 94.6 4.1 8.8E-05 38.4 18.0 68 41-113 56-127 (276)
119 PF06172 Cupin_5: Cupin superf 94.5 0.82 1.8E-05 38.7 11.7 97 17-113 15-124 (139)
120 KOG3706 Uncharacterized conser 94.4 0.025 5.4E-07 56.2 2.4 86 202-289 285-401 (629)
121 PF13759 2OG-FeII_Oxy_5: Putat 94.2 0.33 7.2E-06 38.4 8.2 62 229-290 6-87 (101)
122 PF05726 Pirin_C: Pirin C-term 94.2 0.48 1E-05 37.8 9.1 67 40-114 2-69 (104)
123 COG1482 ManA Phosphomannose is 94.0 1.7 3.7E-05 41.6 13.8 60 223-293 242-302 (312)
124 PF05118 Asp_Arg_Hydrox: Aspar 93.7 0.33 7.1E-06 42.1 7.8 73 37-115 80-158 (163)
125 PRK10572 DNA-binding transcrip 93.4 0.25 5.5E-06 46.5 7.2 46 55-105 47-92 (290)
126 KOG2757 Mannose-6-phosphate is 93.2 0.61 1.3E-05 45.2 9.2 62 35-100 331-392 (411)
127 PF05726 Pirin_C: Pirin C-term 93.1 1.4 2.9E-05 35.2 10.0 68 226-302 2-69 (104)
128 PF02678 Pirin: Pirin; InterP 93.0 0.58 1.3E-05 37.7 7.7 63 47-113 39-105 (107)
129 PF12852 Cupin_6: Cupin 92.8 0.43 9.4E-06 41.9 7.4 41 246-290 36-76 (186)
130 KOG3995 3-hydroxyanthranilate 92.4 0.17 3.6E-06 45.3 4.0 64 42-106 38-101 (279)
131 PF09313 DUF1971: Domain of un 92.3 1 2.2E-05 34.5 7.7 67 232-298 12-79 (82)
132 PRK15131 mannose-6-phosphate i 91.9 1.9 4.1E-05 42.9 11.3 59 36-101 320-378 (389)
133 TIGR02466 conserved hypothetic 91.9 0.57 1.2E-05 42.2 6.9 75 227-302 100-197 (201)
134 PF02373 JmjC: JmjC domain, hy 91.8 0.23 4.9E-06 39.7 3.9 27 80-106 81-107 (114)
135 COG2850 Uncharacterized conser 91.6 0.28 6.2E-06 47.5 4.9 70 229-302 125-212 (383)
136 PRK12335 tellurite resistance 91.4 0.5 1.1E-05 44.7 6.5 72 231-302 19-92 (287)
137 PLN02658 homogentisate 1,2-dio 91.1 1.6 3.5E-05 43.6 9.6 214 45-288 132-367 (435)
138 COG3542 Uncharacterized conser 91.0 8.1 0.00018 32.9 12.3 118 16-140 19-149 (162)
139 PF05995 CDO_I: Cysteine dioxy 90.7 3.3 7E-05 36.4 10.5 80 223-303 75-163 (175)
140 PF04209 HgmA: homogentisate 1 90.7 1 2.2E-05 44.9 8.0 62 233-302 134-196 (424)
141 PRK09685 DNA-binding transcrip 90.4 1.2 2.5E-05 42.1 8.0 65 36-105 44-114 (302)
142 COG3508 HmgA Homogentisate 1,2 90.4 2 4.3E-05 41.6 9.3 224 35-288 123-365 (427)
143 KOG2757 Mannose-6-phosphate is 90.2 1.5 3.4E-05 42.5 8.4 70 223-300 333-403 (411)
144 KOG3706 Uncharacterized conser 90.2 0.21 4.6E-06 49.8 2.7 62 41-102 320-403 (629)
145 PF06865 DUF1255: Protein of u 90.1 6.4 0.00014 30.9 10.3 69 37-113 23-92 (94)
146 PRK09391 fixK transcriptional 89.9 2.2 4.8E-05 38.8 9.1 63 35-97 34-97 (230)
147 PRK05341 homogentisate 1,2-dio 89.6 2.9 6.2E-05 41.8 10.0 73 222-302 132-205 (438)
148 PLN02288 mannose-6-phosphate i 89.6 0.97 2.1E-05 44.9 6.8 60 35-97 332-391 (394)
149 COG2850 Uncharacterized conser 89.2 0.71 1.5E-05 44.9 5.4 72 30-103 114-202 (383)
150 PF09313 DUF1971: Domain of un 88.7 5.5 0.00012 30.5 8.9 61 46-106 12-76 (82)
151 PF13464 DUF4115: Domain of un 88.6 3.2 7E-05 31.0 7.7 53 250-302 3-55 (77)
152 PF13759 2OG-FeII_Oxy_5: Putat 88.6 2 4.3E-05 33.9 6.8 65 41-105 4-92 (101)
153 PF07847 DUF1637: Protein of u 88.4 2.8 6.1E-05 37.7 8.4 97 32-129 39-156 (200)
154 PRK10579 hypothetical protein; 88.4 6.4 0.00014 30.9 9.2 65 40-112 26-91 (94)
155 COG1741 Pirin-related protein 88.4 1.6 3.4E-05 41.3 7.0 71 41-115 48-123 (276)
156 PF07385 DUF1498: Protein of u 87.4 7.4 0.00016 35.4 10.3 78 36-115 86-187 (225)
157 TIGR00218 manA mannose-6-phosp 87.4 3.5 7.5E-05 39.4 8.9 61 34-101 232-292 (302)
158 PF06172 Cupin_5: Cupin superf 86.9 14 0.00031 31.1 11.3 97 203-302 15-125 (139)
159 PF11142 DUF2917: Protein of u 86.7 2.8 6.2E-05 30.3 6.0 57 42-102 2-58 (63)
160 PLN02658 homogentisate 1,2-dio 86.3 5.5 0.00012 39.9 9.6 72 222-301 125-197 (435)
161 TIGR01015 hmgA homogentisate 1 85.2 6.4 0.00014 39.3 9.6 71 222-301 126-197 (429)
162 COG3718 IolB Uncharacterized e 84.4 12 0.00026 34.4 10.0 88 16-106 11-103 (270)
163 PRK09391 fixK transcriptional 83.7 10 0.00022 34.3 9.9 79 221-301 34-113 (230)
164 PRK13918 CRP/FNR family transc 83.6 4.9 0.00011 35.3 7.5 56 225-281 6-62 (202)
165 PF00027 cNMP_binding: Cyclic 83.4 6.1 0.00013 29.2 7.0 49 229-279 3-51 (91)
166 COG3806 ChrR Transcriptional a 82.9 6 0.00013 35.3 7.4 90 12-115 108-197 (216)
167 PF00027 cNMP_binding: Cyclic 82.8 3.3 7.1E-05 30.7 5.2 49 43-91 3-52 (91)
168 TIGR02466 conserved hypothetic 82.2 7.3 0.00016 35.0 8.0 69 38-106 97-189 (201)
169 PRK10572 DNA-binding transcrip 82.0 3.7 8E-05 38.5 6.4 41 245-291 49-89 (290)
170 PF14525 AraC_binding_2: AraC- 82.0 12 0.00025 31.5 9.0 42 59-105 57-98 (172)
171 PRK12335 tellurite resistance 80.9 5.5 0.00012 37.6 7.1 58 46-103 20-81 (287)
172 PRK13918 CRP/FNR family transc 80.8 5.3 0.00011 35.1 6.6 54 40-93 7-63 (202)
173 PF06865 DUF1255: Protein of u 80.8 25 0.00055 27.6 9.4 69 225-302 25-93 (94)
174 PRK11753 DNA-binding transcrip 80.7 12 0.00026 33.0 8.9 53 40-92 21-74 (211)
175 PRK11753 DNA-binding transcrip 80.5 17 0.00038 31.9 9.9 76 225-302 20-100 (211)
176 PF11142 DUF2917: Protein of u 79.7 12 0.00026 27.0 6.9 57 228-291 2-58 (63)
177 COG3822 ABC-type sugar transpo 77.7 11 0.00024 33.4 7.3 71 35-105 84-178 (225)
178 COG3542 Uncharacterized conser 77.6 44 0.00095 28.5 11.9 58 226-286 47-110 (162)
179 COG5553 Predicted metal-depend 76.8 10 0.00022 32.8 6.6 38 223-262 73-110 (191)
180 PRK10579 hypothetical protein; 74.5 24 0.00053 27.7 7.7 66 227-301 27-92 (94)
181 COG5553 Predicted metal-depend 72.9 14 0.00029 32.0 6.4 70 37-107 73-148 (191)
182 cd00038 CAP_ED effector domain 72.9 16 0.00034 27.8 6.6 56 225-282 17-72 (115)
183 KOG2130 Phosphatidylserine-spe 72.3 8 0.00017 37.0 5.4 85 204-294 190-288 (407)
184 COG1482 ManA Phosphomannose is 71.9 23 0.00051 34.0 8.6 58 35-100 240-298 (312)
185 PF04962 KduI: KduI/IolB famil 71.8 40 0.00087 31.6 10.0 79 34-115 148-244 (261)
186 PF02678 Pirin: Pirin; InterP 71.6 12 0.00027 30.0 5.7 61 233-299 39-103 (107)
187 PF07847 DUF1637: Protein of u 70.7 21 0.00046 32.1 7.6 83 221-304 42-143 (200)
188 PRK10402 DNA-binding transcrip 70.4 9.2 0.0002 34.5 5.4 56 225-282 31-86 (226)
189 cd00038 CAP_ED effector domain 68.6 17 0.00036 27.6 5.9 53 40-92 18-71 (115)
190 TIGR03697 NtcA_cyano global ni 68.5 11 0.00023 32.8 5.2 36 245-280 11-46 (193)
191 PF02373 JmjC: JmjC domain, hy 68.3 11 0.00024 29.7 4.9 25 267-291 79-103 (114)
192 smart00100 cNMP Cyclic nucleot 67.9 14 0.0003 28.2 5.3 55 226-282 18-72 (120)
193 COG1741 Pirin-related protein 67.4 14 0.00031 34.8 6.1 56 227-288 48-103 (276)
194 smart00100 cNMP Cyclic nucleot 67.3 22 0.00049 26.9 6.5 53 40-93 18-72 (120)
195 KOG3995 3-hydroxyanthranilate 66.1 8 0.00017 34.8 3.8 49 239-289 47-95 (279)
196 PRK00924 5-keto-4-deoxyuronate 65.5 52 0.0011 31.1 9.3 78 35-114 173-257 (276)
197 PRK09685 DNA-binding transcrip 65.3 29 0.00064 32.5 7.9 62 223-291 45-111 (302)
198 PLN02868 acyl-CoA thioesterase 64.9 20 0.00044 35.7 7.0 54 39-92 31-84 (413)
199 PF05118 Asp_Arg_Hydrox: Aspar 64.8 46 0.00099 28.7 8.4 68 224-295 81-151 (163)
200 COG3508 HmgA Homogentisate 1,2 64.6 58 0.0013 31.8 9.5 62 222-291 124-186 (427)
201 PRK10402 DNA-binding transcrip 64.6 18 0.00038 32.6 6.0 54 40-93 32-86 (226)
202 PRK14584 hmsS hemin storage sy 60.1 19 0.00042 30.9 4.9 44 137-180 96-146 (153)
203 COG0664 Crp cAMP-binding prote 59.9 26 0.00057 30.2 6.2 59 38-96 22-81 (214)
204 PHA02890 hypothetical protein; 58.4 46 0.00099 31.0 7.3 53 60-116 95-147 (278)
205 PRK11161 fumarate/nitrate redu 56.6 24 0.00053 31.7 5.5 52 228-281 40-91 (235)
206 PRK11161 fumarate/nitrate redu 55.3 38 0.00082 30.4 6.5 51 42-92 40-91 (235)
207 PRK02290 3-dehydroquinate synt 54.2 81 0.0018 30.7 8.7 57 35-91 265-323 (344)
208 COG0664 Crp cAMP-binding prote 53.7 26 0.00056 30.3 5.0 59 224-284 22-80 (214)
209 PHA02984 hypothetical protein; 53.6 72 0.0016 29.9 7.8 60 56-117 90-151 (286)
210 TIGR03697 NtcA_cyano global ni 52.1 31 0.00068 29.7 5.3 37 56-92 10-47 (193)
211 PF14525 AraC_binding_2: AraC- 51.3 1.1E+02 0.0024 25.4 8.5 41 245-291 55-95 (172)
212 PRK09392 ftrB transcriptional 50.8 34 0.00074 30.8 5.5 51 40-91 31-82 (236)
213 PF07385 DUF1498: Protein of u 50.8 1.6E+02 0.0035 26.9 9.5 68 227-295 91-180 (225)
214 PF00166 Cpn10: Chaperonin 10 50.0 38 0.00082 26.3 4.8 54 231-289 20-74 (93)
215 PF04115 Ureidogly_hydro: Urei 48.9 88 0.0019 27.1 7.5 67 237-304 73-146 (165)
216 KOG3416 Predicted nucleic acid 48.4 88 0.0019 26.0 6.7 84 30-126 12-99 (134)
217 PRK00364 groES co-chaperonin G 47.2 83 0.0018 24.6 6.4 57 231-292 21-78 (95)
218 PF04074 DUF386: Domain of unk 46.6 1.8E+02 0.0039 24.6 9.3 51 51-101 62-134 (153)
219 COG2731 EbgC Beta-galactosidas 46.6 76 0.0017 27.3 6.5 67 36-102 45-134 (154)
220 PLN02868 acyl-CoA thioesterase 45.2 43 0.00093 33.4 5.6 53 226-281 32-84 (413)
221 COG3123 Uncharacterized protei 41.6 1.2E+02 0.0026 23.4 6.0 43 56-101 40-82 (94)
222 PF03971 IDH: Monomeric isocit 41.1 39 0.00086 35.2 4.5 35 248-282 421-455 (735)
223 PF01959 DHQS: 3-dehydroquinat 41.1 1.7E+02 0.0037 28.7 8.7 57 35-91 275-333 (354)
224 PF00166 Cpn10: Chaperonin 10 39.5 44 0.00094 26.0 3.7 54 47-103 22-77 (93)
225 KOG2131 Uncharacterized conser 39.2 24 0.00053 34.5 2.6 67 40-106 200-294 (427)
226 PF13640 2OG-FeII_Oxy_3: 2OG-F 38.6 71 0.0015 24.4 4.8 62 41-103 3-86 (100)
227 PRK00364 groES co-chaperonin G 37.5 1.3E+02 0.0029 23.4 6.2 41 59-102 36-77 (95)
228 PF13640 2OG-FeII_Oxy_3: 2OG-F 37.4 1.4E+02 0.0031 22.6 6.5 62 228-290 4-84 (100)
229 TIGR00022 uncharacterized prot 36.2 1.4E+02 0.0031 24.9 6.7 45 49-93 60-107 (142)
230 PRK02290 3-dehydroquinate synt 36.1 1.4E+02 0.0031 29.0 7.3 57 223-280 267-323 (344)
231 KOG2130 Phosphatidylserine-spe 36.1 39 0.00084 32.5 3.3 26 81-106 264-289 (407)
232 cd00320 cpn10 Chaperonin 10 Kd 35.4 1.3E+02 0.0027 23.5 5.7 26 77-102 51-76 (93)
233 PF14801 GCD14_N: tRNA methylt 34.6 94 0.002 21.8 4.2 32 257-289 11-42 (54)
234 PF04622 ERG2_Sigma1R: ERG2 an 33.8 1.2E+02 0.0025 27.7 5.9 100 48-160 112-212 (216)
235 KOG1356 Putative transcription 33.7 15 0.00032 39.6 0.2 56 43-103 761-822 (889)
236 PRK10202 ebgC cryptic beta-D-g 33.3 1.8E+02 0.0039 24.7 6.8 51 51-101 58-127 (149)
237 PHA00672 hypothetical protein 33.1 2.9E+02 0.0062 23.0 7.6 68 35-108 45-112 (152)
238 KOG2132 Uncharacterized conser 32.7 21 0.00045 34.5 1.0 67 223-291 250-348 (355)
239 PF04115 Ureidogly_hydro: Urei 32.4 3E+02 0.0065 23.7 8.2 65 51-115 73-145 (165)
240 PHA02984 hypothetical protein; 32.4 2.8E+02 0.006 26.2 8.1 52 248-301 96-147 (286)
241 PRK15186 AraC family transcrip 31.9 1.2E+02 0.0027 28.7 6.2 47 56-106 37-83 (291)
242 KOG3416 Predicted nucleic acid 31.4 2.1E+02 0.0046 23.8 6.5 63 216-289 12-78 (134)
243 KOG2968 Predicted esterase of 31.3 22 0.00048 38.8 1.0 61 30-90 499-560 (1158)
244 KOG2968 Predicted esterase of 31.1 23 0.0005 38.7 1.1 62 216-279 499-560 (1158)
245 PF10313 DUF2415: Uncharacteri 30.1 71 0.0015 21.3 2.9 31 233-264 1-33 (43)
246 COG3822 ABC-type sugar transpo 29.8 2.4E+02 0.0051 25.3 6.9 67 227-295 90-179 (225)
247 PRK04043 tolB translocation pr 29.8 3.4E+02 0.0074 27.1 9.2 49 229-278 363-414 (419)
248 PF01959 DHQS: 3-dehydroquinat 29.7 2.1E+02 0.0045 28.1 7.3 57 223-280 277-333 (354)
249 COG1465 Predicted alternative 29.7 2.1E+02 0.0046 27.4 7.1 54 39-92 301-356 (376)
250 PF00325 Crp: Bacterial regula 29.6 39 0.00084 21.0 1.5 23 140-162 3-25 (32)
251 PRK03606 ureidoglycolate hydro 29.0 3.3E+02 0.0072 23.6 7.8 65 236-301 71-140 (162)
252 cd04456 S1_IF1A_like S1_IF1A_l 28.7 2.1E+02 0.0046 21.5 5.8 28 254-281 11-47 (78)
253 PRK10856 cytoskeletal protein 28.4 1.6E+02 0.0036 28.5 6.4 57 246-302 252-308 (331)
254 PF06719 AraC_N: AraC-type tra 27.9 3.3E+02 0.0072 22.9 7.7 42 55-101 21-62 (155)
255 PRK09392 ftrB transcriptional 27.6 1.8E+02 0.0038 26.0 6.3 53 225-280 30-82 (236)
256 TIGR00178 monomer_idh isocitra 27.6 55 0.0012 34.2 3.0 34 248-281 425-458 (741)
257 PHA02951 Hypothetical protein; 27.3 2.1E+02 0.0045 27.5 6.5 44 245-289 124-167 (337)
258 COG3718 IolB Uncharacterized e 27.1 5.1E+02 0.011 24.0 9.7 88 202-294 11-102 (270)
259 PRK05467 Fe(II)-dependent oxyg 26.9 4.9E+02 0.011 23.8 8.9 23 80-102 141-163 (226)
260 COG3123 Uncharacterized protei 26.3 2.5E+02 0.0055 21.6 5.6 45 240-289 37-81 (94)
261 COG0234 GroS Co-chaperonin Gro 26.2 2.4E+02 0.0051 22.3 5.7 58 46-106 22-81 (96)
262 PLN03192 Voltage-dependent pot 25.6 1.3E+02 0.0028 33.0 5.7 52 40-91 398-449 (823)
263 PRK05467 Fe(II)-dependent oxyg 25.6 1.8E+02 0.0039 26.6 5.8 32 271-302 143-174 (226)
264 PF14326 DUF4384: Domain of un 25.5 2.9E+02 0.0062 20.6 6.4 61 245-306 19-81 (83)
265 PF04773 FecR: FecR protein; 25.2 2.9E+02 0.0064 20.6 8.4 58 41-100 20-79 (98)
266 PTZ00329 eukaryotic translatio 24.8 2.2E+02 0.0048 24.5 5.8 36 246-281 33-79 (155)
267 PF02796 HTH_7: Helix-turn-hel 24.5 83 0.0018 20.7 2.6 24 139-162 21-44 (45)
268 smart00783 A_amylase_inhib Alp 24.3 2.4E+02 0.0052 20.6 4.9 41 245-286 14-57 (69)
269 KOG1633 F-box protein JEMMA an 24.2 94 0.002 33.8 4.2 28 269-296 196-223 (776)
270 PLN00208 translation initiatio 24.0 2.4E+02 0.0051 24.0 5.8 37 245-281 32-79 (145)
271 COG0853 PanD Aspartate 1-decar 23.5 33 0.00072 28.2 0.5 37 245-283 52-88 (126)
272 cd06919 Asp_decarbox Aspartate 23.2 36 0.00079 27.5 0.7 35 247-283 54-88 (111)
273 COG3806 ChrR Transcriptional a 22.7 5.2E+02 0.011 23.3 7.8 85 201-302 111-196 (216)
274 KOG2131 Uncharacterized conser 22.7 77 0.0017 31.2 2.9 61 226-289 200-288 (427)
275 COG2967 ApaG Uncharacterized p 22.3 97 0.0021 25.5 3.0 24 48-71 45-70 (126)
276 PF01356 A_amylase_inhib: Alph 22.2 3.2E+02 0.007 20.0 5.5 41 245-286 13-56 (68)
277 PF10078 DUF2316: Uncharacteri 22.0 86 0.0019 24.4 2.5 26 137-162 21-46 (89)
278 KOG0501 K+-channel KCNQ [Inorg 21.6 58 0.0013 34.0 1.9 62 31-103 563-627 (971)
279 PTZ00490 Ferredoxin superfamil 21.2 1.6E+02 0.0034 25.0 4.2 35 56-90 24-58 (143)
280 COG0361 InfA Translation initi 20.6 2.1E+02 0.0045 21.5 4.2 10 272-281 46-55 (75)
281 TIGR00223 panD L-aspartate-alp 20.5 43 0.00094 27.7 0.6 34 248-283 56-89 (126)
282 PRK14533 groES co-chaperonin G 20.2 3.5E+02 0.0075 21.0 5.7 20 270-289 51-70 (91)
283 PHA02699 hypothetical protein; 20.1 3.1E+02 0.0068 27.0 6.4 98 241-342 164-263 (466)
284 PRK05449 aspartate alpha-decar 20.0 46 0.001 27.6 0.7 34 248-283 56-89 (126)
No 1
>PLN00212 glutelin; Provisional
Probab=100.00 E-value=7.4e-74 Score=567.04 Aligned_cols=349 Identities=26% Similarity=0.500 Sum_probs=317.3
Q ss_pred cCCCccccceeeCCCeEEEEeCCCCCCCcccCceEEEEEEecCCCcccCeeeCCCEEEEEEeCeEEEEEEcCCCc-----
Q 018395 4 DLTPKLAKQVYGGNGGSYHAWCPNELPMLRQGNIGAAKLALEKNGFALPHYCDSARVAYVLQGSGVAGIVLPEKE----- 78 (356)
Q Consensus 4 dl~~~~~~~~~~~~~G~i~~~~~~~~p~l~~~~~~~~~~~l~Pg~~~~pH~h~a~e~~yVl~G~~~~~vv~~~~~----- 78 (356)
.|++.+|+.++++++|.++.|+.. .+.|+|.++++.+++|+|+++.+||||++++++||++|+|+++++.|+|.
T Consensus 48 ~l~a~ep~~ri~se~G~~E~~~~~-~~q~~caGv~~~R~~i~p~gL~lP~y~na~~liyV~qG~G~~G~v~pGcpeT~~~ 126 (493)
T PLN00212 48 RLQAFEPLRKVRSEAGVTEYFDEK-NEQFQCTGVFVIRRVIEPQGLLLPRYSNTPGLVYIIQGRGSMGLTFPGCPATYQQ 126 (493)
T ss_pred ccccCCCchhhcccCceeeecCCC-ChhhcccceEEEEEEecCCcccCccccCCCeEEEEEeCeEEEEEEeCCCcchhhh
Confidence 478999999999999999999965 59999999999999999999999999999999999999999999987652
Q ss_pred --------------------eEEEEEcCCCEEEeCCCcEEEEEecCCCcEEEEEEeeCCCCCC---CCceeEEeeccc--
Q 018395 79 --------------------EKVVAIKKGDGIALPFGVVTWWYNKEDTELVVLFLGDTSKGHK---AGEFTNFFLTGA-- 133 (356)
Q Consensus 79 --------------------~~~~~l~~GDv~~iP~G~~H~~~N~g~e~l~~l~i~~~~~~~~---pg~~~~f~lag~-- 133 (356)
++++.|++|||++||+|++||++|+|++++++++++++++..| |+ +..|||||+
T Consensus 127 ~~~~~~~~~~~~~~~~~d~hqkv~~lr~GDViaiPaG~~hw~yN~Gd~~~v~v~~~d~~n~~Nqld~~-~r~F~LaG~~~ 205 (493)
T PLN00212 127 QFQQFLTEGQSQSQKFRDEHQKIHQFRQGDVVALPAGVAHWFYNDGDAPVVALYVYDINNNANQLEPR-QREFLLAGNNN 205 (493)
T ss_pred hcccccccccccccccccccccceEeccCCEEEECCCCeEEEEeCCCCcEEEEEEEeccccccccCCC-cceeeccCCCc
Confidence 2447999999999999999999999999999999999887655 53 579999996
Q ss_pred ---------------ccccccCcHHHHHhhccCCHHHHHHhhcccC-CceEEEcCCCCcCCCCCcc--------------
Q 018395 134 ---------------NGIFTGFSTEFVSRAWDLDENTVKTLVGKQT-GKGIVKLDANAKLPEPKKE-------------- 183 (356)
Q Consensus 134 ---------------~s~l~~~~~~vl~~af~~~~~~~~~l~~~q~-~~~iv~~~~~~~~~~p~~~-------------- 183 (356)
.++|++|++++|++|||++.++++||+.+|+ ++.||+++++++..+|..+
T Consensus 206 ~~~~~~~~~~~~~~~~nifsGF~~e~La~Afnv~~e~~~klq~~~d~rG~IVrv~~~l~~~~P~~~~~~e~~~~~~~~~~ 285 (493)
T PLN00212 206 RQQQVYGRSIEQHSGQNIFSGFSTELLSEALGINAQVAKRLQSQNDQRGEIIRVKNGLQLLQPTLTQQQEQAQQQQQRLY 285 (493)
T ss_pred cccccccccccccccCchhhcCCHHHHHHHHCCCHHHHHHHhccccCCccEEEECCCcccCCCchhhhhHHHHhhhhccc
Confidence 3599999999999999999999999998764 5899999987765555210
Q ss_pred --------c--------------CCCceeeccC-CCCCcccCCCcEEEEeCCCCCCCccccCceeEEEEecCCCeecccc
Q 018395 184 --------H--------------RDGMAFNCEE-APLDVDIKNGGRVVLLNTKNLPLVGEVGCGADLVRLDGKAMCSPGF 240 (356)
Q Consensus 184 --------~--------------~~~~~~~l~~-~~~~~~~~~gG~~~~~~~~~~p~l~~l~~s~~~v~l~~g~~~~PH~ 240 (356)
. +..+++||.. .+++++++.+|+++++++.+||+|++|+||+++++|.+|||++|||
T Consensus 286 ~~~~~~~~~~~~~~~ngleEt~c~~rlr~Ni~~p~~ad~y~~~~G~it~v~~~~~P~L~~L~LSa~rv~L~~gam~~PHw 365 (493)
T PLN00212 286 QQVQYQQSQQTSGRWNGLDENFCTIKVRLNIENPSRADTYNPRAGRITRLNSQKFPILNLIQMSATRVNLYQNALLSPFW 365 (493)
T ss_pred ccchhhhccccccCCCCccccccccccccccCCccccCccCCCceEEEEechhhCccccccCeeEEEEEEcCCcccCCee
Confidence 0 0124677763 5577889999999999999999999999999999999999999999
Q ss_pred cccCCeeEEEEEeceEEEEEEccCCceEEEEEecCCcEEEEcCCcEEEEeeCCCCeEEEEEEcCCCCceecccccccccc
Q 018395 241 SCDSALQVTYIVRGSGRAQIVGPDGKRVLETTVKAGNLFIVPRFYVVSKIADPDGLAWFSIITTPNPIFTHLAGSIGTWK 320 (356)
Q Consensus 241 h~~~A~ei~~v~~G~~~~~iv~~~g~~~~~~~l~~Gdv~vvP~g~~h~~~~~~~~~~~~~~~~~~~p~~~~laG~~s~l~ 320 (356)
|++ |++|+||++|+++++||+++|+++|+++|++||||||||||+|.+.|++++++|++|.+++++...++||++|+|+
T Consensus 366 n~n-A~eI~yV~rG~g~vqvV~~~g~~vf~~~L~~GdvfVVPqg~~v~~~A~~egfe~v~F~tna~~~~s~laG~~Sv~~ 444 (493)
T PLN00212 366 NVN-AHSVVYITQGRARVQVVSNNGKTVFNGVLRPGQLLIIPQHYAVLKKAEREGCQYIAFKTNANAMVSHIAGKNSIFR 444 (493)
T ss_pred cCC-CCEEEEEeecceEEEEEcCCCCEEEEEEEcCCCEEEECCCCeEEEeecCCceEEEEeecCCCccccccccHHHHHH
Confidence 999 9999999999999999999999999999999999999999999999999999999999999998889999999999
Q ss_pred CCCHHHHHHHcCCCHHHHHHHHhcCCCeEEecCCC
Q 018395 321 SLSPSVLEAAFNVPSDVEKQFRSKRANEAIFFPPP 355 (356)
Q Consensus 321 ~~p~~vl~~af~~~~~~~~~l~~~~~~~~~~~~p~ 355 (356)
+||.+||++||+++.+++++|+.++.+++++++|+
T Consensus 445 alp~eVla~Af~is~eea~~lk~n~~~e~~~~~p~ 479 (493)
T PLN00212 445 ALPVDVIANAYRISREEARRLKNNRGDELGAFTPR 479 (493)
T ss_pred hCCHHHHHHHcCCCHHHHHHHHhcccCceeecCCC
Confidence 99999999999999999999999988888999984
No 2
>TIGR03404 bicupin_oxalic bicupin, oxalate decarboxylase family. Members of this protein family are defined as bicupins as they have two copies of the cupin domain (pfam00190). Two different known activities for members of this family are oxalate decarboxylase (EC 4.1.1.2) and oxalate oxidase (EC 1.2.3.4), although the latter activity has more often been found in distantly related monocupin (germin) proteins.
Probab=100.00 E-value=1.9e-51 Score=399.22 Aligned_cols=309 Identities=18% Similarity=0.246 Sum_probs=264.7
Q ss_pred CCeEEEEeCCCCCCCcccCceEEEEEEecCCCcccCeeeCCCEEEEEEeCeEEEEEEcCCCceEEEEEcCCCEEEeCCCc
Q 018395 17 NGGSYHAWCPNELPMLRQGNIGAAKLALEKNGFALPHYCDSARVAYVLQGSGVAGIVLPEKEEKVVAIKKGDGIALPFGV 96 (356)
Q Consensus 17 ~~G~i~~~~~~~~p~l~~~~~~~~~~~l~Pg~~~~pH~h~a~e~~yVl~G~~~~~vv~~~~~~~~~~l~~GDv~~iP~G~ 96 (356)
++|+++..+..++|.++. +++.+++|.||++++||||.+.|++||++|++++++++.+++.....|++||+++||+|.
T Consensus 49 ~gG~~~~~~~~~lP~l~~--ls~~~~~l~pG~~~~~HwH~~~E~~yVl~G~~~v~~~d~~g~~~~~~L~~GD~~~fP~g~ 126 (367)
T TIGR03404 49 NGGWAREVTVRDLPISTA--IAGVNMRLEPGAIRELHWHKEAEWAYVLYGSCRITAVDENGRNYIDDVGAGDLWYFPPGI 126 (367)
T ss_pred cCceEEEeChhhccCccc--ccceEEEEcCCCCCCcccCCCceEEEEEeeEEEEEEEcCCCcEEEeEECCCCEEEECCCC
Confidence 789999999999999975 789999999999999999977899999999999999987776665689999999999999
Q ss_pred EEEEEecCCCcEEEEEEeeCCCCCCCCceeEEeecccccccccCcHHHHHhhccCCHHHHHHhhcccCCceEEEcCCC--
Q 018395 97 VTWWYNKEDTELVVLFLGDTSKGHKAGEFTNFFLTGANGIFTGFSTEFVSRAWDLDENTVKTLVGKQTGKGIVKLDAN-- 174 (356)
Q Consensus 97 ~H~~~N~g~e~l~~l~i~~~~~~~~pg~~~~f~lag~~s~l~~~~~~vl~~af~~~~~~~~~l~~~q~~~~iv~~~~~-- 174 (356)
+|++.|.+ ++++++++++.+.++.+. .+.+ .++|+.+|.+||+++|+++.+++++|++.+. +|+.....
T Consensus 127 ~H~~~n~~-~~~~~l~vf~~~~f~~~~---~~~~---~~~l~~~p~~Vla~~f~l~~~~~~~l~~~~~--~~~~~~~~~~ 197 (367)
T TIGR03404 127 PHSLQGLD-EGCEFLLVFDDGNFSEDG---TFLV---TDWLAHTPKDVLAKNFGVPESAFDNLPLKEL--YIFPGTVPGP 197 (367)
T ss_pred eEEEEECC-CCeEEEEEeCCcccCCcc---eeeH---HHHHHhCCHHHHHHHhCCCHHHHHhccccCc--eEEecCCCCc
Confidence 99999985 458899888876555543 3343 3678889999999999999999999997765 67754211
Q ss_pred Cc---CCCCCcccCCCceeeccCCCCCcccCCCcEEEEeCCCCCCCccccCceeEEEEecCCCeecccccccCCeeEEEE
Q 018395 175 AK---LPEPKKEHRDGMAFNCEEAPLDVDIKNGGRVVLLNTKNLPLVGEVGCGADLVRLDGKAMCSPGFSCDSALQVTYI 251 (356)
Q Consensus 175 ~~---~~~p~~~~~~~~~~~l~~~~~~~~~~~gG~~~~~~~~~~p~l~~l~~s~~~v~l~~g~~~~PH~h~~~A~ei~~v 251 (356)
.. ...|.....+.++|++...+|. ...||+++.+++.+||++++ +|++.++|.||++++||||++ ++||.||
T Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~~p~--~~~gG~~~~~~~~~~p~~~~--~s~~~~~l~PG~~~~~H~H~~-~~E~~yv 272 (367)
T TIGR03404 198 LDQEAVTGPAGEVPGPFTYHLSEQKPK--QVPGGTVRIADSTNFPVSKT--IAAAIVTVEPGAMRELHWHPN-ADEWQYF 272 (367)
T ss_pred cccccCcCCCCCCCccEEEEhhhCCce--ecCCceEEEEChhhccCcce--EEEEEEEECCCCccCCeeCcC-CCeEEEE
Confidence 11 1112223345678899999984 47899999999999999985 899999999999999999999 9999999
Q ss_pred EeceEEEEEEccCCceEEEEEecCCcEEEEcCCcEEEE-eeCCCCeEEEEEEcCCCCceeccccccccccCCCHHHHHHH
Q 018395 252 VRGSGRAQIVGPDGKRVLETTVKAGNLFIVPRFYVVSK-IADPDGLAWFSIITTPNPIFTHLAGSIGTWKSLSPSVLEAA 330 (356)
Q Consensus 252 ~~G~~~~~iv~~~g~~~~~~~l~~Gdv~vvP~g~~h~~-~~~~~~~~~~~~~~~~~p~~~~laG~~s~l~~~p~~vl~~a 330 (356)
++|++++++++++|+. ....|++||+++||+|+.|++ |.|+++++|++++++..+....| ++||+.+|++||+++
T Consensus 273 l~G~~~~~v~d~~g~~-~~~~l~~GD~~~iP~g~~H~i~N~G~e~l~fL~if~s~~~~~i~l---~~~l~~~p~~vl~~~ 348 (367)
T TIGR03404 273 IQGQARMTVFAAGGNA-RTFDYQAGDVGYVPRNMGHYVENTGDETLVFLEVFKADRFADVSL---NQWLALTPPQLVAAH 348 (367)
T ss_pred EEEEEEEEEEecCCcE-EEEEECCCCEEEECCCCeEEEEECCCCCEEEEEEECCCCCceeEH---HHHHhhCCHHHHHHH
Confidence 9999999999988753 346899999999999999999 56899999999999988877766 599999999999999
Q ss_pred cCCCHHHHHHHHhcC
Q 018395 331 FNVPSDVEKQFRSKR 345 (356)
Q Consensus 331 f~~~~~~~~~l~~~~ 345 (356)
|+++.+++++|++.+
T Consensus 349 ~~~~~~~~~~l~~~~ 363 (367)
T TIGR03404 349 LNLDDEVIDSLKKEK 363 (367)
T ss_pred hCcCHHHHHhccccC
Confidence 999999999998753
No 3
>PF00190 Cupin_1: Cupin; InterPro: IPR006045 This family represents the conserved barrel domain of the 'cupin' superfamily ('cupa' is the Latin term for a small barrel). This family contains 11S and 7S plant seed storage proteins, and germins. Plant seed storage proteins provide the major nitrogen source for the developing plant. ; GO: 0045735 nutrient reservoir activity; PDB: 2E9Q_A 2EVX_A 1OD5_A 1UCX_A 1UD1_C 1FXZ_C 3KGL_C 3KSC_D 1UIJ_F 1IPK_B ....
Probab=99.94 E-value=4.7e-26 Score=194.51 Aligned_cols=134 Identities=29% Similarity=0.470 Sum_probs=108.3
Q ss_pred eeccCCCCCcccCCCcEEEEeCCCCCCCccccCceeEE-EEecCCCeecccccccCCeeEEEEEeceEEEEEEccCCc--
Q 018395 190 FNCEEAPLDVDIKNGGRVVLLNTKNLPLVGEVGCGADL-VRLDGKAMCSPGFSCDSALQVTYIVRGSGRAQIVGPDGK-- 266 (356)
Q Consensus 190 ~~l~~~~~~~~~~~gG~~~~~~~~~~p~l~~l~~s~~~-v~l~~g~~~~PH~h~~~A~ei~~v~~G~~~~~iv~~~g~-- 266 (356)
||+.+.++.+ ++++|+++.+++.+||+|..+..++.. +.|+||||++|||| + |+||+||++|+++++++++++.
T Consensus 1 fn~~~~~~~~-~~~~G~~~~~~~~~~p~~~~~~~~~~~~~~i~pg~~~~Ph~h-~-a~~i~~V~~G~~~~~~v~~~~~~~ 77 (144)
T PF00190_consen 1 FNLREPRPRV-SNEGGRIREADSEDFPILLGLNGVAVRRVLIEPGGLRAPHYH-N-ADEIVYVIEGRGRVGVVGPGGPQE 77 (144)
T ss_dssp EETCSSSEEE-EETTEEEEEESTTTSHCHHHHTTEEEEEEEEETTEEEEEEEE-S-SEEEEEEEESEEEEEEEETTCSSS
T ss_pred CCCCCCCCcc-cCCCEEEEEEChhhCcceecccceEEEeeehhcCCccceeEe-e-eeEEeeeeccceEEEEEecCCccc
Confidence 6888888865 789999999999999987777655555 55699999999999 8 9999999999999999999862
Q ss_pred --eEEEEE--ecCCcEEEEcCCcEEEEeeC-CC-CeEEEEEEcCCCCceeccccccccccCCCHHHHHHHcCCCHHHH
Q 018395 267 --RVLETT--VKAGNLFIVPRFYVVSKIAD-PD-GLAWFSIITTPNPIFTHLAGSIGTWKSLSPSVLEAAFNVPSDVE 338 (356)
Q Consensus 267 --~~~~~~--l~~Gdv~vvP~g~~h~~~~~-~~-~~~~~~~~~~~~p~~~~laG~~s~l~~~p~~vl~~af~~~~~~~ 338 (356)
+.+..+ |++|||++||+|++||+.|. ++ ...+++|.++..+.. +|++|++++|+++.+.+
T Consensus 78 ~~~~~~~~v~l~~Gdv~~vP~G~~h~~~n~~~~~~~~~~~f~~~~~~~~------------l~~~v~~~~F~~~~~~~ 143 (144)
T PF00190_consen 78 EFRDFSQKVRLKAGDVFVVPAGHPHWIINDGDDEALVLIIFDTNNPPNQ------------LPPEVLAKAFFLSGEEV 143 (144)
T ss_dssp EEEEEEEEEEEETTEEEEE-TT-EEEEEECSSSSEEEEEEEEESSTTGE------------SSHHHHHHHEESSHHHH
T ss_pred cceeeeceeeeecccceeeccceeEEEEcCCCCCCEEEEEEECCCCccc------------CCcHHHHHhcCCCcCcC
Confidence 455566 99999999999999999774 34 455666655444222 89999999999999764
No 4
>PF00190 Cupin_1: Cupin; InterPro: IPR006045 This family represents the conserved barrel domain of the 'cupin' superfamily ('cupa' is the Latin term for a small barrel). This family contains 11S and 7S plant seed storage proteins, and germins. Plant seed storage proteins provide the major nitrogen source for the developing plant. ; GO: 0045735 nutrient reservoir activity; PDB: 2E9Q_A 2EVX_A 1OD5_A 1UCX_A 1UD1_C 1FXZ_C 3KGL_C 3KSC_D 1UIJ_F 1IPK_B ....
Probab=99.92 E-value=9.5e-25 Score=186.42 Aligned_cols=135 Identities=24% Similarity=0.478 Sum_probs=111.4
Q ss_pred CCCccccceeeCCCeEEEEeCCCCCCCc-ccCceEEEEEEecCCCcccCeeeCCCEEEEEEeCeEEEEEEcCCC-----c
Q 018395 5 LTPKLAKQVYGGNGGSYHAWCPNELPML-RQGNIGAAKLALEKNGFALPHYCDSARVAYVLQGSGVAGIVLPEK-----E 78 (356)
Q Consensus 5 l~~~~~~~~~~~~~G~i~~~~~~~~p~l-~~~~~~~~~~~l~Pg~~~~pH~h~a~e~~yVl~G~~~~~vv~~~~-----~ 78 (356)
|++.++++++++++|+++.|+..++|.+ ...++++....|+||+++.||||++.|++||++|+++++++.+++ +
T Consensus 1 fn~~~~~~~~~~~~G~~~~~~~~~~p~~~~~~~~~~~~~~i~pg~~~~Ph~h~a~~i~~V~~G~~~~~~v~~~~~~~~~~ 80 (144)
T PF00190_consen 1 FNLREPRPRVSNEGGRIREADSEDFPILLGLNGVAVRRVLIEPGGLRAPHYHNADEIVYVIEGRGRVGVVGPGGPQEEFR 80 (144)
T ss_dssp EETCSSSEEEEETTEEEEEESTTTSHCHHHHTTEEEEEEEEETTEEEEEEEESSEEEEEEEESEEEEEEEETTCSSSEEE
T ss_pred CCCCCCCCcccCCCEEEEEEChhhCcceecccceEEEeeehhcCCccceeEeeeeEEeeeeccceEEEEEecCCccccce
Confidence 4678889999999999999999999844 457788888889999999999999999999999999999999876 2
Q ss_pred eEEEE--EcCCCEEEeCCCcEEEEEecCCCcEEEEEEeeCCCCCCCCceeEEeecccccccccCcHHHHHhhccCCHHHH
Q 018395 79 EKVVA--IKKGDGIALPFGVVTWWYNKEDTELVVLFLGDTSKGHKAGEFTNFFLTGANGIFTGFSTEFVSRAWDLDENTV 156 (356)
Q Consensus 79 ~~~~~--l~~GDv~~iP~G~~H~~~N~g~e~l~~l~i~~~~~~~~pg~~~~f~lag~~s~l~~~~~~vl~~af~~~~~~~ 156 (356)
....+ +++||++++|+|++||+.|.+|++...+.+++++ +|.. .+|+++++++|+++.++.
T Consensus 81 ~~~~~v~l~~Gdv~~vP~G~~h~~~n~~~~~~~~~~~f~~~---~~~~--------------~l~~~v~~~~F~~~~~~~ 143 (144)
T PF00190_consen 81 DFSQKVRLKAGDVFVVPAGHPHWIINDGDDEALVLIIFDTN---NPPN--------------QLPPEVLAKAFFLSGEEV 143 (144)
T ss_dssp EEEEEEEEETTEEEEE-TT-EEEEEECSSSSEEEEEEEEES---STTG--------------ESSHHHHHHHEESSHHHH
T ss_pred eeeceeeeecccceeeccceeEEEEcCCCCCCEEEEEEECC---CCcc--------------cCCcHHHHHhcCCCcCcC
Confidence 33344 9999999999999999999996656666666654 2211 199999999999999864
No 5
>PLN00212 glutelin; Provisional
Probab=99.91 E-value=1.4e-23 Score=208.79 Aligned_cols=162 Identities=14% Similarity=0.250 Sum_probs=138.5
Q ss_pred CcccCCCc--cccceeeCCCeEEEEeCCCCCCCcccCceEEEEEEecCCCcccCeee-CCCEEEEEEeCeEEEEEEcCCC
Q 018395 1 MEIDLTPK--LAKQVYGGNGGSYHAWCPNELPMLRQGNIGAAKLALEKNGFALPHYC-DSARVAYVLQGSGVAGIVLPEK 77 (356)
Q Consensus 1 ~~~dl~~~--~~~~~~~~~~G~i~~~~~~~~p~l~~~~~~~~~~~l~Pg~~~~pH~h-~a~e~~yVl~G~~~~~vv~~~~ 77 (356)
|++..+.. ...++|.+.+|++..+++.++|.|+..++++.++.|.||+|..|||| +|.+++||++|+++++||++++
T Consensus 310 ~rlr~Ni~~p~~ad~y~~~~G~it~v~~~~~P~L~~L~LSa~rv~L~~gam~~PHwn~nA~eI~yV~rG~g~vqvV~~~g 389 (493)
T PLN00212 310 IKVRLNIENPSRADTYNPRAGRITRLNSQKFPILNLIQMSATRVNLYQNALLSPFWNVNAHSVVYITQGRARVQVVSNNG 389 (493)
T ss_pred cccccccCCccccCccCCCceEEEEechhhCccccccCeeEEEEEEcCCcccCCeecCCCCEEEEEeecceEEEEEcCCC
Confidence 34444434 33478999999999999999999999999999999999999999999 9999999999999999999774
Q ss_pred -ceEEEEEcCCCEEEeCCCcEEEEEecCCCcEEEEEEeeCCCCCCCCceeEEeecccccccccCcHHHHHhhccCCHHHH
Q 018395 78 -EEKVVAIKKGDGIALPFGVVTWWYNKEDTELVVLFLGDTSKGHKAGEFTNFFLTGANGIFTGFSTEFVSRAWDLDENTV 156 (356)
Q Consensus 78 -~~~~~~l~~GDv~~iP~G~~H~~~N~g~e~l~~l~i~~~~~~~~pg~~~~f~lag~~s~l~~~~~~vl~~af~~~~~~~ 156 (356)
+....+|++||+++||+|++|..... ++.+.++++..+. ++ ...+|||..|+|+++|.+||++||+++.+++
T Consensus 390 ~~vf~~~L~~GdvfVVPqg~~v~~~A~-~egfe~v~F~tna---~~---~~s~laG~~Sv~~alp~eVla~Af~is~eea 462 (493)
T PLN00212 390 KTVFNGVLRPGQLLIIPQHYAVLKKAE-REGCQYIAFKTNA---NA---MVSHIAGKNSIFRALPVDVIANAYRISREEA 462 (493)
T ss_pred CEEEEEEEcCCCEEEECCCCeEEEeec-CCceEEEEeecCC---Cc---cccccccHHHHHHhCCHHHHHHHcCCCHHHH
Confidence 45567999999999999999988765 5569999866543 22 3456899999999999999999999999999
Q ss_pred HHhhcccCCceEE
Q 018395 157 KTLVGKQTGKGIV 169 (356)
Q Consensus 157 ~~l~~~q~~~~iv 169 (356)
++|+.++.+..++
T Consensus 463 ~~lk~n~~~e~~~ 475 (493)
T PLN00212 463 RRLKNNRGDELGA 475 (493)
T ss_pred HHHHhcccCceee
Confidence 9999987554443
No 6
>TIGR03404 bicupin_oxalic bicupin, oxalate decarboxylase family. Members of this protein family are defined as bicupins as they have two copies of the cupin domain (pfam00190). Two different known activities for members of this family are oxalate decarboxylase (EC 4.1.1.2) and oxalate oxidase (EC 1.2.3.4), although the latter activity has more often been found in distantly related monocupin (germin) proteins.
Probab=99.90 E-value=2.8e-23 Score=202.21 Aligned_cols=139 Identities=19% Similarity=0.275 Sum_probs=124.4
Q ss_pred eeCCCeEEEEeCCCCCCCcccCceEEEEEEecCCCcccCeee-CCCEEEEEEeCeEEEEEEcCCCceEEEEEcCCCEEEe
Q 018395 14 YGGNGGSYHAWCPNELPMLRQGNIGAAKLALEKNGFALPHYC-DSARVAYVLQGSGVAGIVLPEKEEKVVAIKKGDGIAL 92 (356)
Q Consensus 14 ~~~~~G~i~~~~~~~~p~l~~~~~~~~~~~l~Pg~~~~pH~h-~a~e~~yVl~G~~~~~vv~~~~~~~~~~l~~GDv~~i 92 (356)
+...+|+++.+++.++|.++ +++++.++|+||+++++||| +++||+||++|++++++++++++.++.+|++||+++|
T Consensus 224 ~~~~gG~~~~~~~~~~p~~~--~~s~~~~~l~PG~~~~~H~H~~~~E~~yvl~G~~~~~v~d~~g~~~~~~l~~GD~~~i 301 (367)
T TIGR03404 224 KQVPGGTVRIADSTNFPVSK--TIAAAIVTVEPGAMRELHWHPNADEWQYFIQGQARMTVFAAGGNARTFDYQAGDVGYV 301 (367)
T ss_pred eecCCceEEEEChhhccCcc--eEEEEEEEECCCCccCCeeCcCCCeEEEEEEEEEEEEEEecCCcEEEEEECCCCEEEE
Confidence 55789999999999999776 58999999999999999999 8999999999999999988877767789999999999
Q ss_pred CCCcEEEEEecCCCcEEEEEEeeCCCCCCCCceeEEeecccccccccCcHHHHHhhccCCHHHHHHhhccc
Q 018395 93 PFGVVTWWYNKEDTELVVLFLGDTSKGHKAGEFTNFFLTGANGIFTGFSTEFVSRAWDLDENTVKTLVGKQ 163 (356)
Q Consensus 93 P~G~~H~~~N~g~e~l~~l~i~~~~~~~~pg~~~~f~lag~~s~l~~~~~~vl~~af~~~~~~~~~l~~~q 163 (356)
|+|..|++.|.|+++++++|++++. . +.++.| .+||+.+|.+||+++|+++.+.+++|++.+
T Consensus 302 P~g~~H~i~N~G~e~l~fL~if~s~---~---~~~i~l---~~~l~~~p~~vl~~~~~~~~~~~~~l~~~~ 363 (367)
T TIGR03404 302 PRNMGHYVENTGDETLVFLEVFKAD---R---FADVSL---NQWLALTPPQLVAAHLNLDDEVIDSLKKEK 363 (367)
T ss_pred CCCCeEEEEECCCCCEEEEEEECCC---C---CceeEH---HHHHhhCCHHHHHHHhCcCHHHHHhccccC
Confidence 9999999999999999999998753 2 234444 489999999999999999999999998664
No 7
>smart00835 Cupin_1 Cupin. This family represents the conserved barrel domain of the 'cupin' superfamily ('cupa' is the Latin term for a small barrel). This family contains 11S and 7S plant seed storage proteins, and germins. Plant seed storage proteins provide the major nitrogen source for the developing plant.
Probab=99.90 E-value=2.3e-22 Score=172.09 Aligned_cols=141 Identities=26% Similarity=0.516 Sum_probs=124.3
Q ss_pred ccceeeCCCeEEEEeCCCCCCCcccCceEEEEEEecCCCcccCeee-CCCEEEEEEeCeEEEEEEcCC-CceEEEEEcCC
Q 018395 10 AKQVYGGNGGSYHAWCPNELPMLRQGNIGAAKLALEKNGFALPHYC-DSARVAYVLQGSGVAGIVLPE-KEEKVVAIKKG 87 (356)
Q Consensus 10 ~~~~~~~~~G~i~~~~~~~~p~l~~~~~~~~~~~l~Pg~~~~pH~h-~a~e~~yVl~G~~~~~vv~~~-~~~~~~~l~~G 87 (356)
+.+.+++++|+++.|+..++|.+++.++.+.+++++||+...+||| +++|++||++|++.+.+.+++ +++..+.+++|
T Consensus 3 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~i~pg~~~~~h~H~~~~e~~~Vl~G~~~~~~~~~~~~~~~~~~l~~G 82 (146)
T smart00835 3 PRPDFSNEGGRLREADPTNFPALNGLGISAARVNLEPGGMLPPHYHPRATELLYVVRGEGRVGVVDPNGNKVYDARLREG 82 (146)
T ss_pred ccccccCCCceEEEeCchhCcccccCceEEEEEEecCCcCcCCeeCCCCCEEEEEEeCeEEEEEEeCCCCeEEEEEecCC
Confidence 4457899999999999989999999999999999999999999999 799999999999999987653 24456899999
Q ss_pred CEEEeCCCcEEEEEecCCCcEEEEEEeeCCCCCCCCceeEEeecccccccccCcHHHHHhhccCCHHHH
Q 018395 88 DGIALPFGVVTWWYNKEDTELVVLFLGDTSKGHKAGEFTNFFLTGANGIFTGFSTEFVSRAWDLDENTV 156 (356)
Q Consensus 88 Dv~~iP~G~~H~~~N~g~e~l~~l~i~~~~~~~~pg~~~~f~lag~~s~l~~~~~~vl~~af~~~~~~~ 156 (356)
|+++||+|..|++.|.++++++++++.. . +|. ..+|++|..++|++|++++++++|+++.+++
T Consensus 83 D~~~ip~g~~H~~~n~~~~~~~~l~~~~-~---~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 145 (146)
T smart00835 83 DVFVVPQGHPHFQVNSGDENLEFVAFNT-N---DPN--RRFFLAGRNSVLRGLPPEVLAAAFGVSAEEV 145 (146)
T ss_pred CEEEECCCCEEEEEcCCCCCEEEEEEec-C---CCC--ceeEeecccchhhcCCHHHHHHHhCcChHHc
Confidence 9999999999999999999999997543 2 343 4678888889999999999999999999865
No 8
>smart00835 Cupin_1 Cupin. This family represents the conserved barrel domain of the 'cupin' superfamily ('cupa' is the Latin term for a small barrel). This family contains 11S and 7S plant seed storage proteins, and germins. Plant seed storage proteins provide the major nitrogen source for the developing plant.
Probab=99.88 E-value=1.7e-21 Score=166.79 Aligned_cols=138 Identities=28% Similarity=0.491 Sum_probs=124.1
Q ss_pred ccCCCcEEEEeCCCCCCCccccCceeEEEEecCCCeecccccccCCeeEEEEEeceEEEEEEccCCceEEEEEecCCcEE
Q 018395 200 DIKNGGRVVLLNTKNLPLVGEVGCGADLVRLDGKAMCSPGFSCDSALQVTYIVRGSGRAQIVGPDGKRVLETTVKAGNLF 279 (356)
Q Consensus 200 ~~~~gG~~~~~~~~~~p~l~~l~~s~~~v~l~~g~~~~PH~h~~~A~ei~~v~~G~~~~~iv~~~g~~~~~~~l~~Gdv~ 279 (356)
+++++|+++.+++.++|.++..++.+.++.+.||++..||||++ +.|+.||++|++.+.+.+..+++.....+++||++
T Consensus 7 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~i~pg~~~~~h~H~~-~~e~~~Vl~G~~~~~~~~~~~~~~~~~~l~~GD~~ 85 (146)
T smart00835 7 FSNEGGRLREADPTNFPALNGLGISAARVNLEPGGMLPPHYHPR-ATELLYVVRGEGRVGVVDPNGNKVYDARLREGDVF 85 (146)
T ss_pred ccCCCceEEEeCchhCcccccCceEEEEEEecCCcCcCCeeCCC-CCEEEEEEeCeEEEEEEeCCCCeEEEEEecCCCEE
Confidence 47899999999999999999999999999999999999999998 89999999999999999987666677899999999
Q ss_pred EEcCCcEEEEee-CCCCeEEEEEEcCCCCceeccccccccccCCCHHHHHHHcCCCHHHH
Q 018395 280 IVPRFYVVSKIA-DPDGLAWFSIITTPNPIFTHLAGSIGTWKSLSPSVLEAAFNVPSDVE 338 (356)
Q Consensus 280 vvP~g~~h~~~~-~~~~~~~~~~~~~~~p~~~~laG~~s~l~~~p~~vl~~af~~~~~~~ 338 (356)
+||+|..|+..+ ++++++++++.+++.+...+++|.++++.+++++|++++|+++++++
T Consensus 86 ~ip~g~~H~~~n~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 145 (146)
T smart00835 86 VVPQGHPHFQVNSGDENLEFVAFNTNDPNRRFFLAGRNSVLRGLPPEVLAAAFGVSAEEV 145 (146)
T ss_pred EECCCCEEEEEcCCCCCEEEEEEecCCCCceeEeecccchhhcCCHHHHHHHhCcChHHc
Confidence 999999999954 67899999876555445556888889999999999999999999865
No 9
>COG2140 Thermophilic glucose-6-phosphate isomerase and related metalloenzymes [Carbohydrate transport and metabolism / General function prediction only]
Probab=99.80 E-value=6e-19 Score=155.65 Aligned_cols=190 Identities=21% Similarity=0.249 Sum_probs=153.5
Q ss_pred cHHHHHhhccCCHHHHHHhhcccCCceEEEcCCCCcC-CCC-----CcccCCCceeeccCCCCCcccCCCcEEEEeCCCC
Q 018395 141 STEFVSRAWDLDENTVKTLVGKQTGKGIVKLDANAKL-PEP-----KKEHRDGMAFNCEEAPLDVDIKNGGRVVLLNTKN 214 (356)
Q Consensus 141 ~~~vl~~af~~~~~~~~~l~~~q~~~~iv~~~~~~~~-~~p-----~~~~~~~~~~~l~~~~~~~~~~~gG~~~~~~~~~ 214 (356)
+...+.+.|+++.++...+..+|. +|.+.+..... ..+ -...+..+.|.+...+|.. ++|.++......
T Consensus 2 ~~~~~~~~~~vd~~~~~~~p~~~~--~i~~~~~~~~l~~d~~~~~~~~~~~~~~~yel~~~~~~~---~~g~L~~~~t~~ 76 (209)
T COG2140 2 PKLFEPKNFGVDVRTGKLLPLKQV--YIKRGSDPGGLYADEDAYSMLRKKEDDFVYELLESEPGE---RGGDLRLDVTRI 76 (209)
T ss_pred CceeccccccchhhhhhcCCccce--eEEeccCCcccccCHHHHHHhcCCCCceEEEeecccccc---cCCeEEEEeecc
Confidence 456778899999988887766664 56665533221 111 1123457899999888865 299999999999
Q ss_pred CCCccccCceeEEEEecCCCeecccccccCCee--EEEEEeceEEEEEEccCCceEEEEEecCCcEEEEcCCcEEEE-ee
Q 018395 215 LPLVGEVGCGADLVRLDGKAMCSPGFSCDSALQ--VTYIVRGSGRAQIVGPDGKRVLETTVKAGNLFIVPRFYVVSK-IA 291 (356)
Q Consensus 215 ~p~l~~l~~s~~~v~l~~g~~~~PH~h~~~A~e--i~~v~~G~~~~~iv~~~g~~~~~~~l~~Gdv~vvP~g~~h~~-~~ 291 (356)
+|.. +.+.+.++||+|++.||||+ |+| |.||++|++++.+.+++|+ +....+++||+.+||.++.|+. |.
T Consensus 77 ~pGs-----~g~e~~~t~G~~~~~H~Hp~-ade~E~y~vi~G~g~m~v~~~~G~-~~v~~~~~Gd~iyVPp~~gH~t~N~ 149 (209)
T COG2140 77 FPGS-----AGAEVFKTPGAMRELHYHPN-ADEPEIYYVLKGEGRMLVQKPEGE-ARVIAVRAGDVIYVPPGYGHYTINT 149 (209)
T ss_pred CCCc-----cceEEEecCCcccccccCCC-CCcccEEEEEeccEEEEEEcCCCc-EEEEEecCCcEEEeCCCcceEeecC
Confidence 9976 46788999999999999999 999 9999999999999999985 4567999999999999999999 55
Q ss_pred CCCCeEEEEEEcCCCCceeccccccccccCCCHHHHHHHcCCCHHHHHHHHhcC
Q 018395 292 DPDGLAWFSIITTPNPIFTHLAGSIGTWKSLSPSVLEAAFNVPSDVEKQFRSKR 345 (356)
Q Consensus 292 ~~~~~~~~~~~~~~~p~~~~laG~~s~l~~~p~~vl~~af~~~~~~~~~l~~~~ 345 (356)
|++++.|+.++..+.+....+ ..+++.++..+++..|+.+....|..+.+.
T Consensus 150 Gd~pLvf~~v~~~~~~~~y~~---~~~~~~~~~~~~~~~~~~~~~~~D~p~~~~ 200 (209)
T COG2140 150 GDEPLVFLNVYPADAGQDYDL---IAWLGGMPPVLVENGLNKNPKYVDVPRIKF 200 (209)
T ss_pred CCCCEEEEEEEeCCCCceeee---eehhccCCceeeccccccCcccccCccccc
Confidence 889999999997777666555 588899999999999999988777775443
No 10
>TIGR03214 ura-cupin putative allantoin catabolism protein. This model represents a protein containing a tandem arrangement of cupin domains (N-terminal part of pfam07883 and C-terminal more distantly related to pfam00190). This protein is found in the vicinity of genes involved in the catabolism of allantoin, a breakdown product of urate and sometimes of urate iteslf. The distribution of pathway components in the genomes in which this family is observed suggests that the function is linked to the allantoate catabolism to glyoxylate pathway (GenProp0686) since it is sometimes found in genomes lacking any elements of the xanthine-to-allantoin pathways (e.g. in Enterococcus faecalis).
Probab=99.66 E-value=8e-14 Score=130.24 Aligned_cols=194 Identities=13% Similarity=0.151 Sum_probs=130.8
Q ss_pred CceEEEEEEecCCCcc-cCeee-CCCEEEEEEeCeEEEEEEcCCCceEEEEEcCCCEEEeCCCcEEEEEecCCCcEEEEE
Q 018395 35 GNIGAAKLALEKNGFA-LPHYC-DSARVAYVLQGSGVAGIVLPEKEEKVVAIKKGDGIALPFGVVTWWYNKEDTELVVLF 112 (356)
Q Consensus 35 ~~~~~~~~~l~Pg~~~-~pH~h-~a~e~~yVl~G~~~~~vv~~~~~~~~~~l~~GDv~~iP~G~~H~~~N~g~e~l~~l~ 112 (356)
..+.+..++++||+-. .+|+| ..+|++||++|++++.+ ++ ..+.|++||.+++|+|..|.+.|.+++++++++
T Consensus 56 ~~f~~~~v~l~pgg~~~~~~~~~g~ee~iyVl~G~l~v~~---~g--~~~~L~~Gd~~y~pa~~~H~~~N~~~~~a~~l~ 130 (260)
T TIGR03214 56 ATFVQYIVEVHPGGGNTTGFGGEGIETFLFVISGEVNVTA---EG--ETHELREGGYAYLPPGSKWTLANAQAEDARFFL 130 (260)
T ss_pred CcEEEEEEEECCCCcCCCCCCCCceEEEEEEEeCEEEEEE---CC--EEEEECCCCEEEECCCCCEEEEECCCCCEEEEE
Confidence 5788899999998765 45556 45899999999999986 23 458999999999999999999999999999998
Q ss_pred EeeCCCCCCCCceeEEeecccccccccCcHHHHHhhccCCHHHHHHhhcccCCceEEEcCCCCcCCCCCcccCCCceeec
Q 018395 113 LGDTSKGHKAGEFTNFFLTGANGIFTGFSTEFVSRAWDLDENTVKTLVGKQTGKGIVKLDANAKLPEPKKEHRDGMAFNC 192 (356)
Q Consensus 113 i~~~~~~~~pg~~~~f~lag~~s~l~~~~~~vl~~af~~~~~~~~~l~~~q~~~~iv~~~~~~~~~~p~~~~~~~~~~~l 192 (356)
+... ++ -+.| + ..+ ..++. +....-..|..
T Consensus 131 v~k~--------y~--~~~g-------~---------------------~~~-~~vvg-~~~dv~~~~~~---------- 160 (260)
T TIGR03214 131 YKKR--------YQ--PVEG-------L---------------------HAP-ELVVG-NEKDIEPEPYE---------- 160 (260)
T ss_pred EEee--------eE--EcCC-------C---------------------CCC-Ceeec-CHHHCCccccC----------
Confidence 7542 11 0111 0 000 01111 00000000000
Q ss_pred cCCCCCcccCCCcEEEEeCCCCCCCccccCceeEEEEecCCCeec-ccccccCCeeEEEEEeceEEEEEEccCCceEEEE
Q 018395 193 EEAPLDVDIKNGGRVVLLNTKNLPLVGEVGCGADLVRLDGKAMCS-PGFSCDSALQVTYIVRGSGRAQIVGPDGKRVLET 271 (356)
Q Consensus 193 ~~~~~~~~~~~gG~~~~~~~~~~p~l~~l~~s~~~v~l~~g~~~~-PH~h~~~A~ei~~v~~G~~~~~iv~~~g~~~~~~ 271 (356)
-..+.+++.+-+.++.. ++.+..+.|.||+-.. .|.|.. .+..||++|+|.+.+ +|+. .
T Consensus 161 --------g~~~~~~~~llp~~~~~----~~~~~~~~~~PG~~~~~~~~H~~--eh~~yiL~G~G~~~~---~g~~---~ 220 (260)
T TIGR03214 161 --------GMDDVILTTLLPKELAF----DMNVHILSFEPGASHPYIETHVM--EHGLYVLEGKGVYNL---DNNW---V 220 (260)
T ss_pred --------CCCcEEEEEeCchhcCC----CcEEEEEEECCCcccCCcccccc--eeEEEEEeceEEEEE---CCEE---E
Confidence 01112222222222211 4667889999999997 466765 467799999998855 3322 5
Q ss_pred EecCCcEEEEcCCcEEEEee-CCCCeEEEEEEc
Q 018395 272 TVKAGNLFIVPRFYVVSKIA-DPDGLAWFSIIT 303 (356)
Q Consensus 272 ~l~~Gdv~vvP~g~~h~~~~-~~~~~~~~~~~~ 303 (356)
.|++||++++|+|.+|+..| |++++++|--.+
T Consensus 221 ~V~~GD~i~i~~~~~h~~~~~G~~~~~~l~ykd 253 (260)
T TIGR03214 221 PVEAGDYIWMGAYCPQACYAGGRGEFRYLLYKD 253 (260)
T ss_pred EecCCCEEEECCCCCEEEEecCCCcEEEEEEcc
Confidence 89999999999999999955 789999998653
No 11
>PRK11171 hypothetical protein; Provisional
Probab=99.65 E-value=2.9e-14 Score=133.67 Aligned_cols=197 Identities=14% Similarity=0.180 Sum_probs=135.3
Q ss_pred cCceEEEEEEecCCCcccCeee--CCCEEEEEEeCeEEEEEEcCCCceEEEEEcCCCEEEeCCCcEEEEEecCCCcEEEE
Q 018395 34 QGNIGAAKLALEKNGFALPHYC--DSARVAYVLQGSGVAGIVLPEKEEKVVAIKKGDGIALPFGVVTWWYNKEDTELVVL 111 (356)
Q Consensus 34 ~~~~~~~~~~l~Pg~~~~pH~h--~a~e~~yVl~G~~~~~vv~~~~~~~~~~l~~GDv~~iP~G~~H~~~N~g~e~l~~l 111 (356)
..++.+.+++++||+....|+| ..+|++||++|++++.+ ++ .++.|++||.+++|++.+|.+.|.++++++++
T Consensus 58 ~~~~~~~~~~l~PG~~~~~~~h~~~~eE~~~VlsG~l~v~~---~g--~~~~L~~GDsi~~p~~~~H~~~N~g~~~a~~l 132 (266)
T PRK11171 58 GATFSQYLVEVEPGGGSDQPEPDEGAETFLFVVEGEITLTL---EG--KTHALSEGGYAYLPPGSDWTLRNAGAEDARFH 132 (266)
T ss_pred CCcEEEEEEEECCCCcCCCCCCCCCceEEEEEEeCEEEEEE---CC--EEEEECCCCEEEECCCCCEEEEECCCCCEEEE
Confidence 4578889999999998776765 56899999999999986 23 45899999999999999999999999999999
Q ss_pred EEeeCCCCCCCCceeEEeecccccccccCcHHHHHhhccCCHHHHHHhhcccCCceEEEcCCCCcCCCCCcccCCCceee
Q 018395 112 FLGDTSKGHKAGEFTNFFLTGANGIFTGFSTEFVSRAWDLDENTVKTLVGKQTGKGIVKLDANAKLPEPKKEHRDGMAFN 191 (356)
Q Consensus 112 ~i~~~~~~~~pg~~~~f~lag~~s~l~~~~~~vl~~af~~~~~~~~~l~~~q~~~~iv~~~~~~~~~~p~~~~~~~~~~~ 191 (356)
++...- . | +.| .. .+ ..++.-.. +
T Consensus 133 ~v~~~y--~-~-------~~~-------~~---------------------~p-~~~~~~~~-----------------d 156 (266)
T PRK11171 133 WIRKRY--E-P-------VEG-------HE---------------------AP-EAFVGNES-----------------D 156 (266)
T ss_pred EEEcCC--e-E-------cCC-------CC---------------------CC-CeEecchh-----------------c
Confidence 875421 1 1 001 00 00 11221000 0
Q ss_pred ccCCCCCcccCCCcEEE--EeCCCCCCCccccCceeEEEEecCCCeeccc-ccccCCeeEEEEEeceEEEEEEccCCceE
Q 018395 192 CEEAPLDVDIKNGGRVV--LLNTKNLPLVGEVGCGADLVRLDGKAMCSPG-FSCDSALQVTYIVRGSGRAQIVGPDGKRV 268 (356)
Q Consensus 192 l~~~~~~~~~~~gG~~~--~~~~~~~p~l~~l~~s~~~v~l~~g~~~~PH-~h~~~A~ei~~v~~G~~~~~iv~~~g~~~ 268 (356)
+...+. ....|..++ .+++.+. ..++.+..+.|.||+-...| +|. ..|.+||++|++++.+= ++
T Consensus 157 ~~~~~~--~g~~g~~~~~~~~~p~~~----~~~~~~~~~~l~PG~~~~~~~~~~--~ee~i~Vl~G~~~~~~~---~~-- 223 (266)
T PRK11171 157 IEPIPM--PGTDGVWATTRLVDPEDL----RFDMHVNIVTFEPGASIPFVETHV--MEHGLYVLEGKGVYRLN---ND-- 223 (266)
T ss_pred cccccc--CCCCCeEEEEEeeCchhc----CCCcEEEEEEECCCCEEccCcCCC--ceEEEEEEeCEEEEEEC---CE--
Confidence 000000 001122221 1111111 11356888999999999875 554 67999999999999752 22
Q ss_pred EEEEecCCcEEEEcCCcEEEE-eeCCCCeEEEEEEcCC
Q 018395 269 LETTVKAGNLFIVPRFYVVSK-IADPDGLAWFSIITTP 305 (356)
Q Consensus 269 ~~~~l~~Gdv~vvP~g~~h~~-~~~~~~~~~~~~~~~~ 305 (356)
...|++||++.+|.+-+|+. |.|+++++|+...+-+
T Consensus 224 -~~~l~~GD~i~~~~~~~h~~~N~g~~~~~yl~~k~~n 260 (266)
T PRK11171 224 -WVEVEAGDFIWMRAYCPQACYAGGPGPFRYLLYKDVN 260 (266)
T ss_pred -EEEeCCCCEEEECCCCCEEEECCCCCcEEEEEEcccc
Confidence 35799999999999999999 4578999999886433
No 12
>COG2140 Thermophilic glucose-6-phosphate isomerase and related metalloenzymes [Carbohydrate transport and metabolism / General function prediction only]
Probab=99.65 E-value=1.2e-15 Score=134.89 Aligned_cols=128 Identities=23% Similarity=0.333 Sum_probs=108.0
Q ss_pred CeEEEEeCCCCCCCcccCceEEEEEEecCCCcccCeee-CCCE--EEEEEeCeEEEEEEcCCCceEEEEEcCCCEEEeCC
Q 018395 18 GGSYHAWCPNELPMLRQGNIGAAKLALEKNGFALPHYC-DSAR--VAYVLQGSGVAGIVLPEKEEKVVAIKKGDGIALPF 94 (356)
Q Consensus 18 ~G~i~~~~~~~~p~l~~~~~~~~~~~l~Pg~~~~pH~h-~a~e--~~yVl~G~~~~~vv~~~~~~~~~~l~~GDv~~iP~ 94 (356)
+|.++......+|.. ..+...++||++++.||| +++| |+||++|++++.+-.++++..+.++++||++|||+
T Consensus 66 ~g~L~~~~t~~~pGs-----~g~e~~~t~G~~~~~H~Hp~ade~E~y~vi~G~g~m~v~~~~G~~~v~~~~~Gd~iyVPp 140 (209)
T COG2140 66 GGDLRLDVTRIFPGS-----AGAEVFKTPGAMRELHYHPNADEPEIYYVLKGEGRMLVQKPEGEARVIAVRAGDVIYVPP 140 (209)
T ss_pred CCeEEEEeeccCCCc-----cceEEEecCCcccccccCCCCCcccEEEEEeccEEEEEEcCCCcEEEEEecCCcEEEeCC
Confidence 788887666555544 556889999999999999 9988 99999999999999999888899999999999999
Q ss_pred CcEEEEEecCCCcEEEEEEeeCCCCCCCCceeEEeecccccccccCcHHHHHhhccCCHHHHHHh
Q 018395 95 GVVTWWYNKEDTELVVLFLGDTSKGHKAGEFTNFFLTGANGIFTGFSTEFVSRAWDLDENTVKTL 159 (356)
Q Consensus 95 G~~H~~~N~g~e~l~~l~i~~~~~~~~pg~~~~f~lag~~s~l~~~~~~vl~~af~~~~~~~~~l 159 (356)
++.|+..|+|+++|+|+.++..+. . +.+.+ ..++++++..+++..|+.+....+..
T Consensus 141 ~~gH~t~N~Gd~pLvf~~v~~~~~---~---~~y~~---~~~~~~~~~~~~~~~~~~~~~~~D~p 196 (209)
T COG2140 141 GYGHYTINTGDEPLVFLNVYPADA---G---QDYDL---IAWLGGMPPVLVENGLNKNPKYVDVP 196 (209)
T ss_pred CcceEeecCCCCCEEEEEEEeCCC---C---ceeee---eehhccCCceeeccccccCcccccCc
Confidence 999999999999999999887542 1 34444 47888999999999998877655544
No 13
>PF07883 Cupin_2: Cupin domain; InterPro: IPR013096 This family represents the conserved barrel domain of the cupin superfamily [] (cupa is the Latin term for a small barrel). ; PDB: 2OPK_C 3BU7_B 2PHD_D 3NVC_A 3NKT_A 3NJZ_A 3NW4_A 3NST_A 3NL1_A 2H0V_A ....
Probab=99.32 E-value=1.1e-11 Score=92.19 Aligned_cols=69 Identities=29% Similarity=0.379 Sum_probs=61.5
Q ss_pred EEEecCCCcccCeeeCCC-EEEEEEeCeEEEEEEcCCCceEEEEEcCCCEEEeCCCcEEEEEecCCCcEEEEEEe
Q 018395 41 KLALEKNGFALPHYCDSA-RVAYVLQGSGVAGIVLPEKEEKVVAIKKGDGIALPFGVVTWWYNKEDTELVVLFLG 114 (356)
Q Consensus 41 ~~~l~Pg~~~~pH~h~a~-e~~yVl~G~~~~~vv~~~~~~~~~~l~~GDv~~iP~G~~H~~~N~g~e~l~~l~i~ 114 (356)
+++++||+..++|+|... |++||++|++.+.+ ++ ....+++||.+++|+|..|.+.|.++++++++.|+
T Consensus 2 ~~~~~pG~~~~~h~H~~~~e~~~vl~G~~~~~~---~~--~~~~l~~Gd~~~i~~~~~H~~~n~~~~~~~~l~V~ 71 (71)
T PF07883_consen 2 LVTLPPGGSIPPHRHPGEDEFFYVLSGEGTLTV---DG--ERVELKPGDAIYIPPGVPHQVRNPGDEPARFLVVY 71 (71)
T ss_dssp EEEEETTEEEEEEEESSEEEEEEEEESEEEEEE---TT--EEEEEETTEEEEEETTSEEEEEEESSSEEEEEEEE
T ss_pred EEEECCCCCCCCEECCCCCEEEEEEECCEEEEE---cc--EEeEccCCEEEEECCCCeEEEEECCCCCEEEEEEC
Confidence 689999999999999555 99999999999984 23 35899999999999999999999999999999874
No 14
>COG0662 {ManC} Mannose-6-phosphate isomerase [Carbohydrate transport and metabolism]
Probab=99.31 E-value=1.9e-11 Score=102.13 Aligned_cols=79 Identities=22% Similarity=0.281 Sum_probs=71.0
Q ss_pred cCceEEEEEEecCCCcccCeee-CCCEEEEEEeCeEEEEEEcCCCceEEEEEcCCCEEEeCCCcEEEEEecCCCcEEEEE
Q 018395 34 QGNIGAAKLALEKNGFALPHYC-DSARVAYVLQGSGVAGIVLPEKEEKVVAIKKGDGIALPFGVVTWWYNKEDTELVVLF 112 (356)
Q Consensus 34 ~~~~~~~~~~l~Pg~~~~pH~h-~a~e~~yVl~G~~~~~vv~~~~~~~~~~l~~GDv~~iP~G~~H~~~N~g~e~l~~l~ 112 (356)
+..+++..+.++||.-..+|+| ..+|++||++|+|.+.+ ++ +...|++||+++||+|..|++.|.|..+|++++
T Consensus 33 ~~~~~~~~~~v~pg~~~~~~~H~~~dE~~~Vl~G~g~v~~---~~--~~~~v~~gd~~~iP~g~~H~~~N~G~~~L~lie 107 (127)
T COG0662 33 GDRYSIARILVKPGEEISLHHHHHRDEHWYVLEGTGKVTI---GG--EEVEVKAGDSVYIPAGTPHRVRNTGKIPLVLIE 107 (127)
T ss_pred CCcEEEEEEEECCCcccCcccccCcceEEEEEeeEEEEEE---CC--EEEEecCCCEEEECCCCcEEEEcCCCcceEEEE
Confidence 3678999999999999888888 89999999999999987 23 458999999999999999999999999999999
Q ss_pred EeeCC
Q 018395 113 LGDTS 117 (356)
Q Consensus 113 i~~~~ 117 (356)
+..+.
T Consensus 108 i~~p~ 112 (127)
T COG0662 108 VQSPP 112 (127)
T ss_pred EecCC
Confidence 87654
No 15
>PRK04190 glucose-6-phosphate isomerase; Provisional
Probab=99.30 E-value=3.7e-11 Score=106.75 Aligned_cols=87 Identities=22% Similarity=0.269 Sum_probs=74.4
Q ss_pred CCcccCceEEEEEEecCCCc------ccCeee-CC--CEEEEEEeCeEEEEEEcCCCceEEEEEcCCCEEEeCCCcEEEE
Q 018395 30 PMLRQGNIGAAKLALEKNGF------ALPHYC-DS--ARVAYVLQGSGVAGIVLPEKEEKVVAIKKGDGIALPFGVVTWW 100 (356)
Q Consensus 30 p~l~~~~~~~~~~~l~Pg~~------~~pH~h-~a--~e~~yVl~G~~~~~vv~~~~~~~~~~l~~GDv~~iP~G~~H~~ 100 (356)
+.....++.++..+|.||.. ..+||| .. .|++||++|++.+.+-+.++......+++||+++||+|+.|.+
T Consensus 61 ~~~~~~~L~~g~t~l~PG~~g~e~~mt~gH~H~~~~~~EiyyvlsG~g~~~l~~~~G~~~~~~v~pGd~v~IPpg~~H~~ 140 (191)
T PRK04190 61 PEETEGDLNFGTTRLYPGKVGDEYFMTKGHFHAKADRAEIYYGLKGKGLMLLQDPEGEARWIEMEPGTVVYVPPYWAHRS 140 (191)
T ss_pred CCCcCCceEEEEEEECCCcEecccccCCCeEcCCCCCCEEEEEEeCEEEEEEecCCCcEEEEEECCCCEEEECCCCcEEe
Confidence 44566789999999999996 567999 44 4999999999999886555444568999999999999999999
Q ss_pred EecCCCcEEEEEEeeC
Q 018395 101 YNKEDTELVVLFLGDT 116 (356)
Q Consensus 101 ~N~g~e~l~~l~i~~~ 116 (356)
.|+|+++++++++...
T Consensus 141 iN~G~epl~fl~v~p~ 156 (191)
T PRK04190 141 VNTGDEPLVFLACYPA 156 (191)
T ss_pred EECCCCCEEEEEEEcC
Confidence 9999999999998753
No 16
>TIGR02272 gentisate_1_2 gentisate 1,2-dioxygenase. This family consists of gentisate 1,2-dioxygenases. This ring-opening enzyme acts in salicylate degradation that goes via gentisate rather than via catechol. It converts gentisate to maleylpyruvate. Some putative gentisate 1,2-dioxygenases are excluded by a relatively high trusted cutoff score because they are too closely related to known examples of 1-hydroxy-2-naphthoate dioxygenase. Therefore some homologs may be bona fide gentisate 1,2-dioxygenases even if they score below the given cutoffs.
Probab=99.27 E-value=1.2e-10 Score=111.76 Aligned_cols=232 Identities=16% Similarity=0.166 Sum_probs=135.3
Q ss_pred ceEEEEEEecCCCcccCeeeCCCEEEEEEeCeEEEEEEcCCCceEEEEEcCCCEEEeCCCcEEEEEecCCCcEEEEEEee
Q 018395 36 NIGAAKLALEKNGFALPHYCDSARVAYVLQGSGVAGIVLPEKEEKVVAIKKGDGIALPFGVVTWWYNKEDTELVVLFLGD 115 (356)
Q Consensus 36 ~~~~~~~~l~Pg~~~~pH~h~a~e~~yVl~G~~~~~vv~~~~~~~~~~l~~GDv~~iP~G~~H~~~N~g~e~l~~l~i~~ 115 (356)
.+.+..-.|.||....+|-|.+..+.||++|+|...+|+ + +...+++||+|++|++..|...|.+++++.++...|
T Consensus 80 tl~a~~q~l~pGe~~~~HRht~sAl~~vveG~G~~t~V~--g--~~~~~~~gD~~~tP~w~wH~H~n~~d~~~~wld~lD 155 (335)
T TIGR02272 80 SLYAGLQLILPGEVAPSHRHTQSALRFIVEGKGAFTAVD--G--ERTTMHPGDFIITPSWTWHDHGNPGDEPMIWLDGLD 155 (335)
T ss_pred hHHhhhEEeCCCCCCCccccccceEEEEEEcCceEEEEC--C--EEEeeeCCCEEEeCCCeeEecccCCCCcEEEEecCC
Confidence 566788899999999999999999999999999655553 3 348999999999999999999999999877765543
Q ss_pred CCCCCCCCceeEEeecccccccccCcHHHHHhhccCCHHHHHHhhcccCCceEEEcCCCCcCCCCCcccCCC-ceeeccC
Q 018395 116 TSKGHKAGEFTNFFLTGANGIFTGFSTEFVSRAWDLDENTVKTLVGKQTGKGIVKLDANAKLPEPKKEHRDG-MAFNCEE 194 (356)
Q Consensus 116 ~~~~~~pg~~~~f~lag~~s~l~~~~~~vl~~af~~~~~~~~~l~~~q~~~~iv~~~~~~~~~~p~~~~~~~-~~~~l~~ 194 (356)
- |- ++ +| | .+++...+.+.-..+-.-+ +...+ . .+.+..+.... .....+ +.|....
T Consensus 156 ~-----Pl-~~--~l-~-~~f~e~~~~~~~~~~~~~~-~~~~~-~----g~~l~P~~~~~------~~~~sP~~~ypw~~ 213 (335)
T TIGR02272 156 I-----PL-VQ--LF-D-CSFAEGYPEDQQPVTRPEG-DSLAR-Y----GHNMLPVRHKR------SDRSSPIFNYPYER 213 (335)
T ss_pred H-----HH-HH--hh-C-cceeccccccccccccCCc-chhhh-c----ccCcccccccc------CCCCCCceecCcHH
Confidence 2 21 00 11 1 0122111111000000000 00000 0 00011111000 000011 1121111
Q ss_pred CC---------CCcccCCCc-EEEEeCCCCCC-CccccCceeEEEEecCCCeecccccccCCeeEEEEEeceEEEEEEcc
Q 018395 195 AP---------LDVDIKNGG-RVVLLNTKNLP-LVGEVGCGADLVRLDGKAMCSPGFSCDSALQVTYIVRGSGRAQIVGP 263 (356)
Q Consensus 195 ~~---------~~~~~~~gG-~~~~~~~~~~p-~l~~l~~s~~~v~l~~g~~~~PH~h~~~A~ei~~v~~G~~~~~iv~~ 263 (356)
.. .+. ....| .+..+|+.+=+ .+.++ +...-.|.+|....+|=|+ ++.|.||++|+|++.|-+
T Consensus 214 ~~~aL~~~~~~~~~-~~~~g~~l~y~NP~TG~~~~pti--~~~~q~L~~G~~t~~~r~T--~s~Vf~VieG~G~s~ig~- 287 (335)
T TIGR02272 214 SREALDDLTRTGEW-DPWHGLKLRYVNPATGGYPMPTI--GAFIQLLPKGFRTATYRST--DATVFCVVEGRGQVRIGD- 287 (335)
T ss_pred HHHHHHHHHhccCC-CCCceEEEEEeCCCCCCCcchhH--HHHHhccCCCCCCCCcccc--ccEEEEEEeCeEEEEECC-
Confidence 00 000 12222 35566654444 45554 4555788999999999997 468999999999999832
Q ss_pred CCceEEEEEecCCcEEEEcCCcEEEEeeCCCCeEEEEEEcCCCC
Q 018395 264 DGKRVLETTVKAGNLFIVPRFYVVSKIADPDGLAWFSIITTPNP 307 (356)
Q Consensus 264 ~g~~~~~~~l~~Gdv~vvP~g~~h~~~~~~~~~~~~~~~~~~~p 307 (356)
+. .+.++||+|+||....|...+. +++.++.+ ++.|
T Consensus 288 ---~~--~~W~~gD~f~vPsW~~~~h~a~-~da~Lf~~--~D~P 323 (335)
T TIGR02272 288 ---AV--FRFSPKDVFVVPSWHPVRFEAS-DDAVLFSF--SDRP 323 (335)
T ss_pred ---EE--EEecCCCEEEECCCCcEecccC-CCeEEEEe--cCHH
Confidence 32 4799999999999888766554 44544444 3444
No 17
>PRK13290 ectC L-ectoine synthase; Reviewed
Probab=99.23 E-value=9.4e-11 Score=97.45 Aligned_cols=77 Identities=13% Similarity=0.135 Sum_probs=65.8
Q ss_pred CceEEEEEEecCCCcccCeeeCCCEEEEEEeCeEEEEEEcCCCceEEEEEcCCCEEEeCCCcEEEEEecCCCcEEEEEEe
Q 018395 35 GNIGAAKLALEKNGFALPHYCDSARVAYVLQGSGVAGIVLPEKEEKVVAIKKGDGIALPFGVVTWWYNKEDTELVVLFLG 114 (356)
Q Consensus 35 ~~~~~~~~~l~Pg~~~~pH~h~a~e~~yVl~G~~~~~vv~~~~~~~~~~l~~GDv~~iP~G~~H~~~N~g~e~l~~l~i~ 114 (356)
.++++.+++|+||+....|+|...|++||++|++++..++ ++ +++.|++||++++|++.+|++.|. +++++++++
T Consensus 33 ~~~~~~~~~l~pG~~~~~h~h~~~E~~yVL~G~~~~~~i~-~g--~~~~L~aGD~i~~~~~~~H~~~N~--e~~~~l~v~ 107 (125)
T PRK13290 33 MGFSFHETTIYAGTETHLHYKNHLEAVYCIEGEGEVEDLA-TG--EVHPIRPGTMYALDKHDRHYLRAG--EDMRLVCVF 107 (125)
T ss_pred CCEEEEEEEECCCCcccceeCCCEEEEEEEeCEEEEEEcC-CC--EEEEeCCCeEEEECCCCcEEEEcC--CCEEEEEEE
Confidence 5788899999999988889985469999999999997321 12 448999999999999999999997 789999987
Q ss_pred eC
Q 018395 115 DT 116 (356)
Q Consensus 115 ~~ 116 (356)
.+
T Consensus 108 tP 109 (125)
T PRK13290 108 NP 109 (125)
T ss_pred CC
Confidence 64
No 18
>COG3837 Uncharacterized conserved protein, contains double-stranded beta-helix domain [Function unknown]
Probab=99.19 E-value=9.7e-11 Score=98.62 Aligned_cols=78 Identities=23% Similarity=0.382 Sum_probs=69.0
Q ss_pred CceEEEEEEecCCCcc-cCeee-CCCEEEEEEeCeEEEEEEcCCCceEEEEEcCCCEEEeCCC--cEEEEEecCCCcEEE
Q 018395 35 GNIGAAKLALEKNGFA-LPHYC-DSARVAYVLQGSGVAGIVLPEKEEKVVAIKKGDGIALPFG--VVTWWYNKEDTELVV 110 (356)
Q Consensus 35 ~~~~~~~~~l~Pg~~~-~pH~h-~a~e~~yVl~G~~~~~vv~~~~~~~~~~l~~GDv~~iP~G--~~H~~~N~g~e~l~~ 110 (356)
..+.+....++||+.. ..||| ..+|++|||+|++++.+ ++. .+.|++||++-||+| ..|.++|.++..+++
T Consensus 40 ~~fGvn~~~v~PG~~Ss~~H~Hs~edEfv~ILeGE~~l~~---d~~--e~~lrpGD~~gFpAG~~~aHhliN~s~~~~~y 114 (161)
T COG3837 40 KRFGVNLEIVEPGGESSLRHWHSAEDEFVYILEGEGTLRE---DGG--ETRLRPGDSAGFPAGVGNAHHLINRSDVILRY 114 (161)
T ss_pred hhcccceEEeCCCCccccccccccCceEEEEEcCceEEEE---CCe--eEEecCCceeeccCCCcceeEEeecCCceEEE
Confidence 4677889999999976 79999 99999999999999865 332 379999999999999 999999999999999
Q ss_pred EEEeeCC
Q 018395 111 LFLGDTS 117 (356)
Q Consensus 111 l~i~~~~ 117 (356)
|++.+..
T Consensus 115 L~vG~r~ 121 (161)
T COG3837 115 LEVGTRE 121 (161)
T ss_pred EEecccc
Confidence 9998754
No 19
>COG1917 Uncharacterized conserved protein, contains double-stranded beta-helix domain [Function unknown]
Probab=99.19 E-value=1.6e-10 Score=96.84 Aligned_cols=81 Identities=25% Similarity=0.304 Sum_probs=70.2
Q ss_pred CcccCceEEEEEEecCCCcccCeeeC-CCEEEEEEeCeEEEEEEcCCCceEEEEEcCCCEEEeCCCcEEEEEecCCCcEE
Q 018395 31 MLRQGNIGAAKLALEKNGFALPHYCD-SARVAYVLQGSGVAGIVLPEKEEKVVAIKKGDGIALPFGVVTWWYNKEDTELV 109 (356)
Q Consensus 31 ~l~~~~~~~~~~~l~Pg~~~~pH~h~-a~e~~yVl~G~~~~~vv~~~~~~~~~~l~~GDv~~iP~G~~H~~~N~g~e~l~ 109 (356)
...+.++.+..++++||+....|.|. .++.+||++|++++++- + ..+.+++||++++|+|..||+.|.+++...
T Consensus 37 ~~~~~~~~~~~v~~~~G~~~~~H~hp~~~~~~~Vl~G~~~~~~~---g--~~~~l~~Gd~i~ip~g~~H~~~a~~~~~~~ 111 (131)
T COG1917 37 RNEGENLSVVLVTFEPGAVIPWHTHPLGEQTIYVLEGEGTVQLE---G--EKKELKAGDVIIIPPGVVHGLKAVEDEPMV 111 (131)
T ss_pred CCCCceEEEEEEEECCCcccccccCCCcceEEEEEecEEEEEec---C--CceEecCCCEEEECCCCeeeeccCCCCcee
Confidence 33467888999999999999999996 99999999999999972 2 348999999999999999999999888767
Q ss_pred EEEEeeC
Q 018395 110 VLFLGDT 116 (356)
Q Consensus 110 ~l~i~~~ 116 (356)
+|++...
T Consensus 112 ~l~v~~~ 118 (131)
T COG1917 112 LLLVFPL 118 (131)
T ss_pred EEEEeee
Confidence 7777653
No 20
>PF01050 MannoseP_isomer: Mannose-6-phosphate isomerase; InterPro: IPR001538 Mannose-6-phosphate isomerase or phosphomannose isomerase (5.3.1.8 from EC) (PMI) is the enzyme that catalyses the interconversion of mannose-6-phosphate and fructose-6-phosphate. In eukaryotes PMI is involved in the synthesis of GDP-mannose, a constituent of N- and O-linked glycans and GPI anchors and in prokaryotes it participates in a variety of pathways, including capsular polysaccharide biosynthesis and D-mannose metabolism. PMI's belong to the cupin superfamily whose functions range from isomerase and epimerase activities involved in the modification of cell wall carbohydrates in bacteria and plants, to non-enzymatic storage proteins in plant seeds, and transcription factors linked to congenital baldness in mammals []. Three classes of PMI have been defined []. The type II phosphomannose isomerases are bifunctional enzymes 5.3.1.8 from EC. This entry covers the isomerase region of the protein []. The guanosine diphospho-D-mannose pyrophosphorylase region is described in another InterPro entry (see IPR005836 from INTERPRO).; GO: 0016779 nucleotidyltransferase activity, 0005976 polysaccharide metabolic process
Probab=99.08 E-value=4.3e-09 Score=90.25 Aligned_cols=89 Identities=16% Similarity=0.214 Sum_probs=78.1
Q ss_pred CCCeEEEEeCCCCCCCcccCceEEEEEEecCCCcccCeee-CCCEEEEEEeCeEEEEEEcCCCceEEEEEcCCCEEEeCC
Q 018395 16 GNGGSYHAWCPNELPMLRQGNIGAAKLALEKNGFALPHYC-DSARVAYVLQGSGVAGIVLPEKEEKVVAIKKGDGIALPF 94 (356)
Q Consensus 16 ~~~G~i~~~~~~~~p~l~~~~~~~~~~~l~Pg~~~~pH~h-~a~e~~yVl~G~~~~~vv~~~~~~~~~~l~~GDv~~iP~ 94 (356)
..+|+++.++.. .++.+.++++.||.....|+| ...|..+|++|++.+.+ ++ ....+.+||+++||+
T Consensus 49 rpWG~~~~l~~~-------~~~~vkri~V~pG~~lSlq~H~~R~E~W~Vv~G~a~v~~---~~--~~~~~~~g~sv~Ip~ 116 (151)
T PF01050_consen 49 RPWGSYEVLDEG-------EGYKVKRITVNPGKRLSLQYHHHRSEHWTVVSGTAEVTL---DD--EEFTLKEGDSVYIPR 116 (151)
T ss_pred cCCcEEEEEEcc-------CCEEEEEEEEcCCCccceeeecccccEEEEEeCeEEEEE---CC--EEEEEcCCCEEEECC
Confidence 467888877642 368899999999999999999 89999999999999987 33 448999999999999
Q ss_pred CcEEEEEecCCCcEEEEEEeeC
Q 018395 95 GVVTWWYNKEDTELVVLFLGDT 116 (356)
Q Consensus 95 G~~H~~~N~g~e~l~~l~i~~~ 116 (356)
|..|.+.|.|+++|+++-+-..
T Consensus 117 g~~H~i~n~g~~~L~~IEVq~G 138 (151)
T PF01050_consen 117 GAKHRIENPGKTPLEIIEVQTG 138 (151)
T ss_pred CCEEEEECCCCcCcEEEEEecC
Confidence 9999999999999999998653
No 21
>COG3435 Gentisate 1,2-dioxygenase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.03 E-value=5.3e-09 Score=96.70 Aligned_cols=236 Identities=20% Similarity=0.220 Sum_probs=148.1
Q ss_pred CCcccCc-----eEEEEEEecCCCcccCeeeCCCEEEEEEeCeEEEEEEcCCCceEEEEEcCCCEEEeCCCcEEEEEecC
Q 018395 30 PMLRQGN-----IGAAKLALEKNGFALPHYCDSARVAYVLQGSGVAGIVLPEKEEKVVAIKKGDGIALPFGVVTWWYNKE 104 (356)
Q Consensus 30 p~l~~~~-----~~~~~~~l~Pg~~~~pH~h~a~e~~yVl~G~~~~~vv~~~~~~~~~~l~~GDv~~iP~G~~H~~~N~g 104 (356)
|.|++.. +=++.--|-||-..+.|-|+...+-||++|+|..++|+. ++ ..+++||.+..|++..|..-|.|
T Consensus 80 P~l~g~ssiT~TLyAglQlilPGEvApsHrHsqsAlRFvveG~Ga~T~VdG---er-~~M~~GDfilTP~w~wHdHgn~g 155 (351)
T COG3435 80 PGLRGRSSITPTLYAGLQLILPGEVAPSHRHNQSALRFVVEGKGAYTVVDG---ER-TPMEAGDFILTPAWTWHDHGNEG 155 (351)
T ss_pred CCCCCcccccHHHHhhhheecCcccCCcccccccceEEEEeccceeEeecC---ce-eeccCCCEEEccCceeccCCCCC
Confidence 7777653 123556789999999999999999999999999988853 34 69999999999999999999999
Q ss_pred CCcEEEEEEeeCCCCCCCCceeEEeecccccccccCcHHHHHhhccCCHHHHHHhhcccCCceEEEcCCCCc-----CC-
Q 018395 105 DTELVVLFLGDTSKGHKAGEFTNFFLTGANGIFTGFSTEFVSRAWDLDENTVKTLVGKQTGKGIVKLDANAK-----LP- 178 (356)
Q Consensus 105 ~e~l~~l~i~~~~~~~~pg~~~~f~lag~~s~l~~~~~~vl~~af~~~~~~~~~l~~~q~~~~iv~~~~~~~-----~~- 178 (356)
.+++.++--.|- |- -. .+ | ..++...|++.......... .+-|.-.+.+ ..
T Consensus 156 ~eP~iWlDgLDi-----pl--v~-~l-~-~gFfe~~~e~~q~v~~~~~d-------------~~ar~~~~~rP~~~r~~~ 212 (351)
T COG3435 156 TEPCIWLDGLDI-----PL--VN-SL-G-AGFFEEHPEEQQPVTRPEGD-------------SLARYGPGMRPLRHRWGK 212 (351)
T ss_pred CCceEEEcccch-----HH--HH-hh-c-ccccccCchhcCcccCCCCC-------------chhhcCCCccccccCCCC
Confidence 999888755442 20 00 11 1 13344444443332221111 1112111111 00
Q ss_pred --CCC-----cccCCCc-eeeccCCCCCcccCCCcEEEEeCCCCC-CCccccCceeEEEEecCCCeecccccccCCeeEE
Q 018395 179 --EPK-----KEHRDGM-AFNCEEAPLDVDIKNGGRVVLLNTKNL-PLVGEVGCGADLVRLDGKAMCSPGFSCDSALQVT 249 (356)
Q Consensus 179 --~p~-----~~~~~~~-~~~l~~~~~~~~~~~gG~~~~~~~~~~-p~l~~l~~s~~~v~l~~g~~~~PH~h~~~A~ei~ 249 (356)
.|- ...++-+ .+... .+|| ..+|-.++.+|+.+= -++-+ |++..-.|.||-.-.+|-|++ + .+.
T Consensus 213 ~~SPlf~Y~w~~t~eAL~~la~~-e~~d--p~dG~~~ryvNP~TGg~~mpt--I~a~mqlL~~Gf~~~~~r~t~-s-~iy 285 (351)
T COG3435 213 PYSPLFNYAWDRTREALERLARL-EEPD--PFDGYKMRYVNPVTGGYAMPT--IGAFMQLLPPGFHGKAHRHTD-S-TIY 285 (351)
T ss_pred CCCcccccccccHHHHHHHHHhc-cCCC--CCCcceEEEecCCCCCCcCch--HHHHHHhcCCcccCCceeccC-C-EEE
Confidence 110 0000000 00000 1222 134555666654421 11223 445555678888889999997 4 588
Q ss_pred EEEeceEEEEEEccCCceEEEEEecCCcEEEEcCCcEEEEeeCCCCeEEEEEEcCCCC
Q 018395 250 YIVRGSGRAQIVGPDGKRVLETTVKAGNLFIVPRFYVVSKIADPDGLAWFSIITTPNP 307 (356)
Q Consensus 250 ~v~~G~~~~~iv~~~g~~~~~~~l~~Gdv~vvP~g~~h~~~~~~~~~~~~~~~~~~~p 307 (356)
-|.+|++++.|-+ ++ .+.++||+||||.=+.|-..++++++.+++|. +.|
T Consensus 286 ~V~eGsg~~~Ig~---~r---f~~~~~D~fvVPsW~~~~~~~gs~da~LFsfs--D~P 335 (351)
T COG3435 286 HVVEGSGYTIIGG---ER---FDWSAGDIFVVPSWAWHEHVNGSEDAVLFSFS--DRP 335 (351)
T ss_pred EEEecceeEEECC---EE---eeccCCCEEEccCcceeecccCCcceEEEecC--CcH
Confidence 8999999988754 23 56889999999999999888888889888875 554
No 22
>TIGR03214 ura-cupin putative allantoin catabolism protein. This model represents a protein containing a tandem arrangement of cupin domains (N-terminal part of pfam07883 and C-terminal more distantly related to pfam00190). This protein is found in the vicinity of genes involved in the catabolism of allantoin, a breakdown product of urate and sometimes of urate iteslf. The distribution of pathway components in the genomes in which this family is observed suggests that the function is linked to the allantoate catabolism to glyoxylate pathway (GenProp0686) since it is sometimes found in genomes lacking any elements of the xanthine-to-allantoin pathways (e.g. in Enterococcus faecalis).
Probab=99.02 E-value=3.7e-09 Score=98.91 Aligned_cols=75 Identities=21% Similarity=0.208 Sum_probs=65.4
Q ss_pred ceEEEEEEecCCCcccCee-eCCCEEEEEEeCeEEEEEEcCCCceEEEEEcCCCEEEeCCCcEEEEEecCCCcEEEEEEe
Q 018395 36 NIGAAKLALEKNGFALPHY-CDSARVAYVLQGSGVAGIVLPEKEEKVVAIKKGDGIALPFGVVTWWYNKEDTELVVLFLG 114 (356)
Q Consensus 36 ~~~~~~~~l~Pg~~~~pH~-h~a~e~~yVl~G~~~~~vv~~~~~~~~~~l~~GDv~~iP~G~~H~~~N~g~e~l~~l~i~ 114 (356)
++.+.+++++||+....|. |..++.+|||+|+|.+.+ ++ +.+++++||++++|++.+||++|.|++++++|.--
T Consensus 178 ~~~~~~~~~~PG~~~~~~~~H~~eh~~yiL~G~G~~~~---~g--~~~~V~~GD~i~i~~~~~h~~~~~G~~~~~~l~yk 252 (260)
T TIGR03214 178 DMNVHILSFEPGASHPYIETHVMEHGLYVLEGKGVYNL---DN--NWVPVEAGDYIWMGAYCPQACYAGGRGEFRYLLYK 252 (260)
T ss_pred CcEEEEEEECCCcccCCcccccceeEEEEEeceEEEEE---CC--EEEEecCCCEEEECCCCCEEEEecCCCcEEEEEEc
Confidence 6788889999999998655 488899999999999976 33 34899999999999999999999999999999744
Q ss_pred e
Q 018395 115 D 115 (356)
Q Consensus 115 ~ 115 (356)
|
T Consensus 253 d 253 (260)
T TIGR03214 253 D 253 (260)
T ss_pred c
Confidence 3
No 23
>PF07883 Cupin_2: Cupin domain; InterPro: IPR013096 This family represents the conserved barrel domain of the cupin superfamily [] (cupa is the Latin term for a small barrel). ; PDB: 2OPK_C 3BU7_B 2PHD_D 3NVC_A 3NKT_A 3NJZ_A 3NW4_A 3NST_A 3NL1_A 2H0V_A ....
Probab=99.00 E-value=3.1e-09 Score=78.80 Aligned_cols=69 Identities=17% Similarity=0.256 Sum_probs=59.3
Q ss_pred EEEecCCCeecccccccCCeeEEEEEeceEEEEEEccCCceEEEEEecCCcEEEEcCCcEEEEe-eCCCCeEEEEEE
Q 018395 227 LVRLDGKAMCSPGFSCDSALQVTYIVRGSGRAQIVGPDGKRVLETTVKAGNLFIVPRFYVVSKI-ADPDGLAWFSII 302 (356)
Q Consensus 227 ~v~l~~g~~~~PH~h~~~A~ei~~v~~G~~~~~iv~~~g~~~~~~~l~~Gdv~vvP~g~~h~~~-~~~~~~~~~~~~ 302 (356)
+++|.||+-..+|+|+. ..|+.||++|++.+. ++ ++ ...|++||.+++|++-.|... .+++++.++.++
T Consensus 2 ~~~~~pG~~~~~h~H~~-~~e~~~vl~G~~~~~-~~--~~---~~~l~~Gd~~~i~~~~~H~~~n~~~~~~~~l~V~ 71 (71)
T PF07883_consen 2 LVTLPPGGSIPPHRHPG-EDEFFYVLSGEGTLT-VD--GE---RVELKPGDAIYIPPGVPHQVRNPGDEPARFLVVY 71 (71)
T ss_dssp EEEEETTEEEEEEEESS-EEEEEEEEESEEEEE-ET--TE---EEEEETTEEEEEETTSEEEEEEESSSEEEEEEEE
T ss_pred EEEECCCCCCCCEECCC-CCEEEEEEECCEEEE-Ec--cE---EeEccCCEEEEECCCCeEEEEECCCCCEEEEEEC
Confidence 57899999999999987 779999999999999 54 22 357999999999999999994 577889998764
No 24
>PRK04190 glucose-6-phosphate isomerase; Provisional
Probab=98.99 E-value=6.4e-09 Score=92.46 Aligned_cols=86 Identities=16% Similarity=0.262 Sum_probs=71.4
Q ss_pred ccccCceeEEEEecCCCe------ecccccccCCe--eEEEEEeceEEEEEEccCCceEEEEEecCCcEEEEcCCcEEEE
Q 018395 218 VGEVGCGADLVRLDGKAM------CSPGFSCDSAL--QVTYIVRGSGRAQIVGPDGKRVLETTVKAGNLFIVPRFYVVSK 289 (356)
Q Consensus 218 l~~l~~s~~~v~l~~g~~------~~PH~h~~~A~--ei~~v~~G~~~~~iv~~~g~~~~~~~l~~Gdv~vvP~g~~h~~ 289 (356)
++.-++.+..+.|.||.+ ..+|||++ .. |+.||++|++.+.+-+.+|.. ....+++||+++||+|+.|..
T Consensus 63 ~~~~~L~~g~t~l~PG~~g~e~~mt~gH~H~~-~~~~EiyyvlsG~g~~~l~~~~G~~-~~~~v~pGd~v~IPpg~~H~~ 140 (191)
T PRK04190 63 ETEGDLNFGTTRLYPGKVGDEYFMTKGHFHAK-ADRAEIYYGLKGKGLMLLQDPEGEA-RWIEMEPGTVVYVPPYWAHRS 140 (191)
T ss_pred CcCCceEEEEEEECCCcEecccccCCCeEcCC-CCCCEEEEEEeCEEEEEEecCCCcE-EEEEECCCCEEEECCCCcEEe
Confidence 344468899999999996 56799986 54 999999999999998877642 346899999999999999988
Q ss_pred -eeCCCCeEEEEEEcCC
Q 018395 290 -IADPDGLAWFSIITTP 305 (356)
Q Consensus 290 -~~~~~~~~~~~~~~~~ 305 (356)
|.|+++++++++....
T Consensus 141 iN~G~epl~fl~v~p~~ 157 (191)
T PRK04190 141 VNTGDEPLVFLACYPAD 157 (191)
T ss_pred EECCCCCEEEEEEEcCC
Confidence 5588899999987444
No 25
>PRK15460 cpsB mannose-1-phosphate guanyltransferase; Provisional
Probab=98.96 E-value=4.2e-09 Score=106.23 Aligned_cols=78 Identities=12% Similarity=0.151 Sum_probs=69.2
Q ss_pred cCceEEEEEEecCCCcccCeee-CCCEEEEEEeCeEEEEEEcCCCceEEEEEcCCCEEEeCCCcEEEEEecCCCcEEEEE
Q 018395 34 QGNIGAAKLALEKNGFALPHYC-DSARVAYVLQGSGVAGIVLPEKEEKVVAIKKGDGIALPFGVVTWWYNKEDTELVVLF 112 (356)
Q Consensus 34 ~~~~~~~~~~l~Pg~~~~pH~h-~a~e~~yVl~G~~~~~vv~~~~~~~~~~l~~GDv~~iP~G~~H~~~N~g~e~l~~l~ 112 (356)
+.++.+.+++++||+....|+| ..+|..||++|++++.+ ++ +++.|++||.++||+|.+|.+.|.|++++++|+
T Consensus 382 g~~~~v~~i~v~PG~~~~~~~H~~~~E~~~VlsG~~~v~i---dg--~~~~L~~GDSi~ip~g~~H~~~N~g~~~l~iI~ 456 (478)
T PRK15460 382 GDRYQVKRITVKPGEGLSVQMHHHRAEHWVVVAGTAKVTI---DG--DIKLLGENESIYIPLGATHCLENPGKIPLDLIE 456 (478)
T ss_pred CCcEEEEEEEECCCCcCCcCCCCCCceEEEEEeeEEEEEE---CC--EEEEecCCCEEEECCCCcEEEEcCCCCCEEEEE
Confidence 3468889999999998877877 77899999999999987 33 458999999999999999999999999999999
Q ss_pred EeeC
Q 018395 113 LGDT 116 (356)
Q Consensus 113 i~~~ 116 (356)
+...
T Consensus 457 V~~g 460 (478)
T PRK15460 457 VRSG 460 (478)
T ss_pred EEcC
Confidence 8653
No 26
>TIGR01479 GMP_PMI mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase. This enzyme is known to be bifunctional, as both mannose-6-phosphate isomerase (EC 5.3.1.8) (PMI) and mannose-1-phosphate guanylyltransferase (EC 2.7.7.22) in Pseudomonas aeruginosa, Xanthomonas campestris, and Gluconacetobacter xylinus. The literature on the enzyme from E. coli attributes mannose-6-phosphate isomerase activity to an adjacent gene, but the present sequence has not been shown to lack the activity. The PMI domain is C-terminal.
Probab=98.96 E-value=7.5e-09 Score=104.71 Aligned_cols=89 Identities=12% Similarity=0.168 Sum_probs=75.1
Q ss_pred CCCeEEEEeCCCCCCCcccCceEEEEEEecCCCcccCeee-CCCEEEEEEeCeEEEEEEcCCCceEEEEEcCCCEEEeCC
Q 018395 16 GNGGSYHAWCPNELPMLRQGNIGAAKLALEKNGFALPHYC-DSARVAYVLQGSGVAGIVLPEKEEKVVAIKKGDGIALPF 94 (356)
Q Consensus 16 ~~~G~i~~~~~~~~p~l~~~~~~~~~~~l~Pg~~~~pH~h-~a~e~~yVl~G~~~~~vv~~~~~~~~~~l~~GDv~~iP~ 94 (356)
..+|+...... +.++.+..++++||+...+|+| ..+|.+||++|++++.+ ++ +++.|++||++++|+
T Consensus 362 ~pWG~~~~~~~-------~~~~~~~~~~i~PG~~~~~h~H~~~~E~~~Vl~G~~~v~~---dg--~~~~l~~GDsi~ip~ 429 (468)
T TIGR01479 362 RPWGKYDSIDQ-------GDRYQVKRITVKPGEKLSLQMHHHRAEHWIVVSGTARVTI---GD--ETLLLTENESTYIPL 429 (468)
T ss_pred CCCCceEEEec-------CCCEEEEEEEECCCCccCccccCCCceEEEEEeeEEEEEE---CC--EEEEecCCCEEEECC
Confidence 45666665432 3478899999999998888888 77888899999999987 33 448999999999999
Q ss_pred CcEEEEEecCCCcEEEEEEeeC
Q 018395 95 GVVTWWYNKEDTELVVLFLGDT 116 (356)
Q Consensus 95 G~~H~~~N~g~e~l~~l~i~~~ 116 (356)
|.+|.+.|.|+++++++++...
T Consensus 430 ~~~H~~~N~g~~~~~~i~v~~~ 451 (468)
T TIGR01479 430 GVIHRLENPGKIPLELIEVQSG 451 (468)
T ss_pred CCcEEEEcCCCCCEEEEEEEcC
Confidence 9999999999999999998753
No 27
>PRK09943 DNA-binding transcriptional repressor PuuR; Provisional
Probab=98.95 E-value=6.9e-09 Score=92.19 Aligned_cols=76 Identities=12% Similarity=0.060 Sum_probs=64.8
Q ss_pred CceEEEEEEecCCCccc-CeeeCCCEEEEEEeCeEEEEEEcCCCceEEEEEcCCCEEEeCCCcEEEEEecCCCcEEEEEE
Q 018395 35 GNIGAAKLALEKNGFAL-PHYCDSARVAYVLQGSGVAGIVLPEKEEKVVAIKKGDGIALPFGVVTWWYNKEDTELVVLFL 113 (356)
Q Consensus 35 ~~~~~~~~~l~Pg~~~~-pH~h~a~e~~yVl~G~~~~~vv~~~~~~~~~~l~~GDv~~iP~G~~H~~~N~g~e~l~~l~i 113 (356)
..+.+...+++||+... .|+|...|++||++|++.+.+ ++ ..+.|++||.+++|++.+|.+.|.++++++++++
T Consensus 105 ~~~~~~~~~~~pg~~~~~~~~h~~~E~~~Vl~G~~~~~~---~~--~~~~l~~Gd~~~~~~~~~H~~~n~~~~~~~~l~~ 179 (185)
T PRK09943 105 RTLAMIFETYQPGTTTGERIKHQGEEIGTVLEGEIVLTI---NG--QDYHLVAGQSYAINTGIPHSFSNTSAGICRIISA 179 (185)
T ss_pred CeeEEEEEEccCCCCcccccccCCcEEEEEEEeEEEEEE---CC--EEEEecCCCEEEEcCCCCeeeeCCCCCCeEEEEE
Confidence 45666777899999764 556688999999999999987 33 4589999999999999999999999999999987
Q ss_pred ee
Q 018395 114 GD 115 (356)
Q Consensus 114 ~~ 115 (356)
..
T Consensus 180 ~~ 181 (185)
T PRK09943 180 HT 181 (185)
T ss_pred eC
Confidence 64
No 28
>COG4101 Predicted mannose-6-phosphate isomerase [Carbohydrate transport and metabolism]
Probab=98.95 E-value=5.1e-09 Score=83.91 Aligned_cols=79 Identities=19% Similarity=0.159 Sum_probs=67.9
Q ss_pred CceEEEEEEecCCCcccCeee-CCCEEEEEEeCeEEEEEEcCCCceEEEEEcCCCEEEeCCCcEEEEEecCCCcEEEEEE
Q 018395 35 GNIGAAKLALEKNGFALPHYC-DSARVAYVLQGSGVAGIVLPEKEEKVVAIKKGDGIALPFGVVTWWYNKEDTELVVLFL 113 (356)
Q Consensus 35 ~~~~~~~~~l~Pg~~~~pH~h-~a~e~~yVl~G~~~~~vv~~~~~~~~~~l~~GDv~~iP~G~~H~~~N~g~e~l~~l~i 113 (356)
.++-+..++|.||+....|.| .-+..+||++|++.+-+-+ .-+...++++||.||||+|++|.-.|.+++++..+.+
T Consensus 44 s~i~~~~vTi~pgAkakaH~H~~hEtaIYvlsG~ah~w~G~--rLE~ha~~~pGDf~YiPpgVPHqp~N~S~ep~s~vIa 121 (142)
T COG4101 44 SGICMHLVTIPPGAKAKAHLHEEHETAIYVLSGEAHTWYGN--RLEEHAEVGPGDFFYIPPGVPHQPANLSTEPLSAVIA 121 (142)
T ss_pred ceeeEEEEeeCCCccccccccccccEEEEEEeceeeeeecc--ceeeeEEecCCCeEEcCCCCCCcccccCCCCeEEEEE
Confidence 577788999999999999999 8888999999999997732 1245679999999999999999999999999887765
Q ss_pred ee
Q 018395 114 GD 115 (356)
Q Consensus 114 ~~ 115 (356)
-.
T Consensus 122 Rs 123 (142)
T COG4101 122 RS 123 (142)
T ss_pred cc
Confidence 43
No 29
>PRK11171 hypothetical protein; Provisional
Probab=98.83 E-value=4.9e-08 Score=91.67 Aligned_cols=75 Identities=19% Similarity=0.152 Sum_probs=66.4
Q ss_pred ceEEEEEEecCCCcccCe-eeCCCEEEEEEeCeEEEEEEcCCCceEEEEEcCCCEEEeCCCcEEEEEecCCCcEEEEEEe
Q 018395 36 NIGAAKLALEKNGFALPH-YCDSARVAYVLQGSGVAGIVLPEKEEKVVAIKKGDGIALPFGVVTWWYNKEDTELVVLFLG 114 (356)
Q Consensus 36 ~~~~~~~~l~Pg~~~~pH-~h~a~e~~yVl~G~~~~~vv~~~~~~~~~~l~~GDv~~iP~G~~H~~~N~g~e~l~~l~i~ 114 (356)
++.+..++|+||+....| +|..+|.+||++|++++.+ ++ +.+.|++||++++|++.+|++.|.|+++++++..-
T Consensus 183 ~~~~~~~~l~PG~~~~~~~~~~~ee~i~Vl~G~~~~~~---~~--~~~~l~~GD~i~~~~~~~h~~~N~g~~~~~yl~~k 257 (266)
T PRK11171 183 DMHVNIVTFEPGASIPFVETHVMEHGLYVLEGKGVYRL---NN--DWVEVEAGDFIWMRAYCPQACYAGGPGPFRYLLYK 257 (266)
T ss_pred CcEEEEEEECCCCEEccCcCCCceEEEEEEeCEEEEEE---CC--EEEEeCCCCEEEECCCCCEEEECCCCCcEEEEEEc
Confidence 468899999999999885 5689999999999999986 33 44899999999999999999999999999999865
Q ss_pred e
Q 018395 115 D 115 (356)
Q Consensus 115 ~ 115 (356)
+
T Consensus 258 ~ 258 (266)
T PRK11171 258 D 258 (266)
T ss_pred c
Confidence 4
No 30
>PF02041 Auxin_BP: Auxin binding protein; InterPro: IPR000526 Auxin binding protein is located in the lumen of the endoplasmic reticulum (ER). The primary structure contains an N-terminal hydrophobic leader sequence of 30-40 amino acids, which could represent a signal for translocation of the protein to the ER [, ]. The mature protein comprises around 165 residues, and contains a number of potential N-glycosylation sites. In vitro transport studies have demonstrated co-translational glycosylation []. Retention within the lumen of the ER correlates with an additional signal located at the C terminus, represented by the sequence Lys-Asp-Glu-Leu, known to be responsible for preventing secretion of proteins from the lumen of the ER in eukaryotic cells [, ].; GO: 0004872 receptor activity, 0005788 endoplasmic reticulum lumen; PDB: 1LR5_D 1LRH_D.
Probab=98.81 E-value=7.2e-08 Score=80.53 Aligned_cols=83 Identities=16% Similarity=0.158 Sum_probs=56.2
Q ss_pred CceEEEEEEecCCCcccCeeeCCCEEEEEEeCeEEEEEEcCC----CceEEEEEcCCCEEEeCCCcEEEEEecC-CCcEE
Q 018395 35 GNIGAAKLALEKNGFALPHYCDSARVAYVLQGSGVAGIVLPE----KEEKVVAIKKGDGIALPFGVVTWWYNKE-DTELV 109 (356)
Q Consensus 35 ~~~~~~~~~l~Pg~~~~pH~h~a~e~~yVl~G~~~~~vv~~~----~~~~~~~l~~GDv~~iP~G~~H~~~N~g-~e~l~ 109 (356)
..+.+-+-++.||+..++|-|..+|+++|++|+|++.+.... |+.+.+.+-+++.|+||.+.+|.++|++ .+++.
T Consensus 42 kevEVwlQTfAPG~~TPiHRHsCEEVFvVLkG~GTl~l~~~~~~~pG~pqef~~~pnSTf~IPvn~~HQv~NT~e~eDlq 121 (167)
T PF02041_consen 42 KEVEVWLQTFAPGSATPIHRHSCEEVFVVLKGSGTLYLASSHEKYPGKPQEFPIFPNSTFHIPVNDAHQVWNTNEHEDLQ 121 (167)
T ss_dssp SSEEEEEEEE-TT-B--EEEESS-EEEEEEE--EEEEE--SSSSS--S-EEEEE-TTEEEEE-TT--EEEE---SSS-EE
T ss_pred eeeeEEeeeecCCCCCCCccccccEEEEEEecceEEEEecccccCCCCceEEEecCCCeEEeCCCCcceeecCCCCcceE
Confidence 457888999999999999999999999999999999987653 4455689999999999999999999998 48999
Q ss_pred EEEEeeCC
Q 018395 110 VLFLGDTS 117 (356)
Q Consensus 110 ~l~i~~~~ 117 (356)
++.+....
T Consensus 122 vlViiSrp 129 (167)
T PF02041_consen 122 VLVIISRP 129 (167)
T ss_dssp EEEEEESS
T ss_pred EEEEecCC
Confidence 99887643
No 31
>PF06560 GPI: Glucose-6-phosphate isomerase (GPI); InterPro: IPR010551 This entry consists of several bacterial and archaeal glucose-6-phosphate isomerase (GPI) proteins (5.3.1.9 from EC), which are involved in glycolysis and in gluconeogenesis and catalyse the conversion of D-glucose 6-phosphate to D-fructose 6-phosphate. The deduced amino acid sequence of the first archaeal PGI isolated from Pyrococcus furiosus revealed that it is not related to its eukaryotic and many of its bacterial counterparts. In contrast, this archaeal PGI shares similarity with the cupin superfamily that consists of a variety of proteins that are generally involved in sugar metabolism in both prokaryotes and eukaryotes [].; GO: 0004347 glucose-6-phosphate isomerase activity, 0006094 gluconeogenesis, 0006096 glycolysis, 0005737 cytoplasm; PDB: 1J3Q_B 1J3R_B 1J3P_A 2GC0_A 1X8E_A 1X82_A 1QY4_B 2GC2_B 1QXJ_A 1QXR_B ....
Probab=98.78 E-value=7.4e-08 Score=84.71 Aligned_cols=87 Identities=23% Similarity=0.206 Sum_probs=57.7
Q ss_pred CCcccCceEEEEEEecCCCc------ccCeee-C------CCEEEEEEeCeEEEEEEcCCC----ceEEEEEcCCCEEEe
Q 018395 30 PMLRQGNIGAAKLALEKNGF------ALPHYC-D------SARVAYVLQGSGVAGIVLPEK----EEKVVAIKKGDGIAL 92 (356)
Q Consensus 30 p~l~~~~~~~~~~~l~Pg~~------~~pH~h-~------a~e~~yVl~G~~~~~vv~~~~----~~~~~~l~~GDv~~i 92 (356)
..++..++......|.||.+ ..=||| . ..|+++|++|+|.+-+-..++ .....++++||+++|
T Consensus 43 ~~~~~~~L~ygiTvi~Pg~vG~E~~~T~GH~H~~~~~~~~~pEvY~vl~G~g~~lLq~~~~~~~~~~~~v~~~~G~~v~I 122 (182)
T PF06560_consen 43 EWLQKRNLRYGITVIPPGKVGGEYFMTKGHYHPISPCGLSYPEVYEVLSGEGLILLQKEEGDDVGDVIAVEAKPGDVVYI 122 (182)
T ss_dssp -------EEEEEEEE---EETTEE-B---BB-SS----TT--EEEEEEESSEEEEEE-TTS-----EEEEEE-TTEEEEE
T ss_pred ccceeeeEEeeeEEEcCcccCCccccCCCccCCccccCCCCCcEEEEEeCEEEEEEEecCCCcceeEEEEEeCCCCEEEE
Confidence 44666789999999999875 356999 7 799999999999999888776 455689999999999
Q ss_pred CCCcEEEEEecCCCcEEEEEEeeC
Q 018395 93 PFGVVTWWYNKEDTELVVLFLGDT 116 (356)
Q Consensus 93 P~G~~H~~~N~g~e~l~~l~i~~~ 116 (356)
|+++.|...|+|+++|++.++...
T Consensus 123 Pp~yaH~tIN~g~~~L~~~~~~~~ 146 (182)
T PF06560_consen 123 PPGYAHRTINTGDEPLVFAAWVPR 146 (182)
T ss_dssp -TT-EEEEEE-SSS-EEEEEEEET
T ss_pred CCCceEEEEECCCCcEEEEEEEec
Confidence 999999999999999999988763
No 32
>PRK13290 ectC L-ectoine synthase; Reviewed
Probab=98.76 E-value=8e-08 Score=79.91 Aligned_cols=81 Identities=11% Similarity=0.241 Sum_probs=66.1
Q ss_pred cCceeEEEEecCCCeecccccccCCeeEEEEEeceEEEEEEccCCceEEEEEecCCcEEEEcCCcEEEEeeCCCCeEEEE
Q 018395 221 VGCGADLVRLDGKAMCSPGFSCDSALQVTYIVRGSGRAQIVGPDGKRVLETTVKAGNLFIVPRFYVVSKIADPDGLAWFS 300 (356)
Q Consensus 221 l~~s~~~v~l~~g~~~~PH~h~~~A~ei~~v~~G~~~~~iv~~~g~~~~~~~l~~Gdv~vvP~g~~h~~~~~~~~~~~~~ 300 (356)
.++++.++.|+||+-...|+|.. .|+.||++|++++..++. | + ...|++||.+++|++.+|.+.|. +++++++
T Consensus 33 ~~~~~~~~~l~pG~~~~~h~h~~--~E~~yVL~G~~~~~~i~~-g-~--~~~L~aGD~i~~~~~~~H~~~N~-e~~~~l~ 105 (125)
T PRK13290 33 MGFSFHETTIYAGTETHLHYKNH--LEAVYCIEGEGEVEDLAT-G-E--VHPIRPGTMYALDKHDRHYLRAG-EDMRLVC 105 (125)
T ss_pred CCEEEEEEEECCCCcccceeCCC--EEEEEEEeCEEEEEEcCC-C-E--EEEeCCCeEEEECCCCcEEEEcC-CCEEEEE
Confidence 35788999999999888899865 499999999999984421 1 2 35799999999999999999776 8999999
Q ss_pred EEcCCCCc
Q 018395 301 IITTPNPI 308 (356)
Q Consensus 301 ~~~~~~p~ 308 (356)
+.+..-++
T Consensus 106 v~tP~~~~ 113 (125)
T PRK13290 106 VFNPPLTG 113 (125)
T ss_pred EECCCCCC
Confidence 98654433
No 33
>COG0662 {ManC} Mannose-6-phosphate isomerase [Carbohydrate transport and metabolism]
Probab=98.65 E-value=1.6e-07 Score=78.39 Aligned_cols=78 Identities=18% Similarity=0.185 Sum_probs=68.1
Q ss_pred CceeEEEEecCCCeecccccccCCeeEEEEEeceEEEEEEccCCceEEEEEecCCcEEEEcCCcEEEEe-eCCCCeEEEE
Q 018395 222 GCGADLVRLDGKAMCSPGFSCDSALQVTYIVRGSGRAQIVGPDGKRVLETTVKAGNLFIVPRFYVVSKI-ADPDGLAWFS 300 (356)
Q Consensus 222 ~~s~~~v~l~~g~~~~PH~h~~~A~ei~~v~~G~~~~~iv~~~g~~~~~~~l~~Gdv~vvP~g~~h~~~-~~~~~~~~~~ 300 (356)
..+++++.+.||+-..+|.|.+ ..|+.||++|++.+.+=+ + ...|++||.++||+|.+|.+. .|+.++++++
T Consensus 35 ~~~~~~~~v~pg~~~~~~~H~~-~dE~~~Vl~G~g~v~~~~---~---~~~v~~gd~~~iP~g~~H~~~N~G~~~L~lie 107 (127)
T COG0662 35 RYSIARILVKPGEEISLHHHHH-RDEHWYVLEGTGKVTIGG---E---EVEVKAGDSVYIPAGTPHRVRNTGKIPLVLIE 107 (127)
T ss_pred cEEEEEEEECCCcccCcccccC-cceEEEEEeeEEEEEECC---E---EEEecCCCEEEECCCCcEEEEcCCCcceEEEE
Confidence 5789999999999999999998 899999999999998763 2 357999999999999999994 4788999999
Q ss_pred EEcCCC
Q 018395 301 IITTPN 306 (356)
Q Consensus 301 ~~~~~~ 306 (356)
+.....
T Consensus 108 i~~p~~ 113 (127)
T COG0662 108 VQSPPY 113 (127)
T ss_pred EecCCc
Confidence 875554
No 34
>COG1917 Uncharacterized conserved protein, contains double-stranded beta-helix domain [Function unknown]
Probab=98.65 E-value=1.9e-07 Score=78.07 Aligned_cols=79 Identities=20% Similarity=0.274 Sum_probs=65.1
Q ss_pred cccCceeEEEEecCCCeecccccccCCeeEEEEEeceEEEEEEccCCceEEEEEecCCcEEEEcCCcEEEEee-CCCCeE
Q 018395 219 GEVGCGADLVRLDGKAMCSPGFSCDSALQVTYIVRGSGRAQIVGPDGKRVLETTVKAGNLFIVPRFYVVSKIA-DPDGLA 297 (356)
Q Consensus 219 ~~l~~s~~~v~l~~g~~~~PH~h~~~A~ei~~v~~G~~~~~iv~~~g~~~~~~~l~~Gdv~vvP~g~~h~~~~-~~~~~~ 297 (356)
.+-.+++..+.+.||+....|.||- ..+.+||++|++++++-. +. ..+++||++++|+|-.|+..| +++.+.
T Consensus 39 ~~~~~~~~~v~~~~G~~~~~H~hp~-~~~~~~Vl~G~~~~~~~g---~~---~~l~~Gd~i~ip~g~~H~~~a~~~~~~~ 111 (131)
T COG1917 39 EGENLSVVLVTFEPGAVIPWHTHPL-GEQTIYVLEGEGTVQLEG---EK---KELKAGDVIIIPPGVVHGLKAVEDEPMV 111 (131)
T ss_pred CCceEEEEEEEECCCcccccccCCC-cceEEEEEecEEEEEecC---Cc---eEecCCCEEEECCCCeeeeccCCCCcee
Confidence 3446789999999999999999995 679999999999999872 22 579999999999999999955 444467
Q ss_pred EEEEEcC
Q 018395 298 WFSIITT 304 (356)
Q Consensus 298 ~~~~~~~ 304 (356)
++++...
T Consensus 112 ~l~v~~~ 118 (131)
T COG1917 112 LLLVFPL 118 (131)
T ss_pred EEEEeee
Confidence 7776644
No 35
>PF11699 CENP-C_C: Mif2/CENP-C like; PDB: 2VPV_B.
Probab=98.48 E-value=1.5e-06 Score=67.18 Aligned_cols=73 Identities=25% Similarity=0.333 Sum_probs=56.7
Q ss_pred ceEEEEEEecCCCcccCeee-CCCEEEEEEeCeEEEEEEcCCCceEEEEEcCCCEEEeCCCcEEEEEecCCCcEEEEEE
Q 018395 36 NIGAAKLALEKNGFALPHYC-DSARVAYVLQGSGVAGIVLPEKEEKVVAIKKGDGIALPFGVVTWWYNKEDTELVVLFL 113 (356)
Q Consensus 36 ~~~~~~~~l~Pg~~~~pH~h-~a~e~~yVl~G~~~~~vv~~~~~~~~~~l~~GDv~~iP~G~~H~~~N~g~e~l~~l~i 113 (356)
-++.+.++|+||+.-.+-.. +..-++||++|...+.+ ++..+.+.+||+|+||+|-.-.+.|.++++++++++
T Consensus 11 ~fa~G~l~Lpp~~~K~~k~s~~~~~vF~V~~G~v~Vti-----~~~~f~v~~G~~F~VP~gN~Y~i~N~~~~~a~LfF~ 84 (85)
T PF11699_consen 11 FFASGMLELPPGGEKPPKNSRDNTMVFYVIKGKVEVTI-----HETSFVVTKGGSFQVPRGNYYSIKNIGNEEAKLFFV 84 (85)
T ss_dssp S-EEEEEEE-TCCCEEEEE--SEEEEEEEEESEEEEEE-----TTEEEEEETT-EEEE-TT-EEEEEE-SSS-EEEEEE
T ss_pred CceeEEEEeCCCCccCCcccCCcEEEEEEEeCEEEEEE-----cCcEEEEeCCCEEEECCCCEEEEEECCCCcEEEEEe
Confidence 57889999999998777666 88889999999999998 335589999999999999999999999998887753
No 36
>COG3837 Uncharacterized conserved protein, contains double-stranded beta-helix domain [Function unknown]
Probab=98.46 E-value=7.2e-07 Score=75.44 Aligned_cols=82 Identities=17% Similarity=0.160 Sum_probs=66.4
Q ss_pred CCccccCceeEEEEecCCCee-cccccccCCeeEEEEEeceEEEEEEccCCceEEEEEecCCcEEEEcCC--cEEEEee-
Q 018395 216 PLVGEVGCGADLVRLDGKAMC-SPGFSCDSALQVTYIVRGSGRAQIVGPDGKRVLETTVKAGNLFIVPRF--YVVSKIA- 291 (356)
Q Consensus 216 p~l~~l~~s~~~v~l~~g~~~-~PH~h~~~A~ei~~v~~G~~~~~iv~~~g~~~~~~~l~~Gdv~vvP~g--~~h~~~~- 291 (356)
=.|+. +++....+.||+-. .+|||.. -.|++||++|++.+.+=+ . .+.|++||++-||+| ..|+.+|
T Consensus 37 ~Gl~~--fGvn~~~v~PG~~Ss~~H~Hs~-edEfv~ILeGE~~l~~d~---~---e~~lrpGD~~gFpAG~~~aHhliN~ 107 (161)
T COG3837 37 LGLKR--FGVNLEIVEPGGESSLRHWHSA-EDEFVYILEGEGTLREDG---G---ETRLRPGDSAGFPAGVGNAHHLINR 107 (161)
T ss_pred cChhh--cccceEEeCCCCcccccccccc-CceEEEEEcCceEEEECC---e---eEEecCCceeeccCCCcceeEEeec
Confidence 34554 55888899999887 6999998 999999999999776533 1 357999999999999 8999855
Q ss_pred CCCCeEEEEEEcCCC
Q 018395 292 DPDGLAWFSIITTPN 306 (356)
Q Consensus 292 ~~~~~~~~~~~~~~~ 306 (356)
++..++++++-+...
T Consensus 108 s~~~~~yL~vG~r~~ 122 (161)
T COG3837 108 SDVILRYLEVGTREP 122 (161)
T ss_pred CCceEEEEEeccccc
Confidence 677899999965444
No 37
>PRK13264 3-hydroxyanthranilate 3,4-dioxygenase; Provisional
Probab=98.46 E-value=4.7e-07 Score=78.79 Aligned_cols=61 Identities=20% Similarity=0.133 Sum_probs=52.7
Q ss_pred ecCCCcccCeeeCCCEEEEEEeCeEEEEEEcCCCceEEEEEcCCCEEEeCCCcEEEEEecCC
Q 018395 44 LEKNGFALPHYCDSARVAYVLQGSGVAGIVLPEKEEKVVAIKKGDGIALPFGVVTWWYNKED 105 (356)
Q Consensus 44 l~Pg~~~~pH~h~a~e~~yVl~G~~~~~vv~~~~~~~~~~l~~GDv~~iP~G~~H~~~N~g~ 105 (356)
=.||.....|+|..+|++|+++|+..+.+++.+ +.++..|++||++++|+|++|..+...+
T Consensus 41 gGpn~r~d~H~~~tdE~FyqleG~~~l~v~d~g-~~~~v~L~eGd~fllP~gvpHsP~r~~~ 101 (177)
T PRK13264 41 GGPNARTDFHYDPGEEFFYQLEGDMYLKVQEDG-KRRDVPIREGEMFLLPPHVPHSPQREAG 101 (177)
T ss_pred ccCCcccccccCCCceEEEEECCeEEEEEEcCC-ceeeEEECCCCEEEeCCCCCcCCccCCC
Confidence 378888899999999999999999999998743 3356899999999999999999987433
No 38
>COG4297 Uncharacterized protein containing double-stranded beta helix domain [Function unknown]
Probab=98.43 E-value=5e-07 Score=74.38 Aligned_cols=69 Identities=17% Similarity=0.252 Sum_probs=59.3
Q ss_pred cCCCee-cccccccCCeeEEEEEeceEEEEEEccCCceEEEEEecCCcEEEEcCCcEEEEeeCCCCeEEEEEEc
Q 018395 231 DGKAMC-SPGFSCDSALQVTYIVRGSGRAQIVGPDGKRVLETTVKAGNLFIVPRFYVVSKIADPDGLAWFSIIT 303 (356)
Q Consensus 231 ~~g~~~-~PH~h~~~A~ei~~v~~G~~~~~iv~~~g~~~~~~~l~~Gdv~vvP~g~~h~~~~~~~~~~~~~~~~ 303 (356)
=.|+++ --|||++ |||++.|++|++.++|-.++|+. -++.+||++++|+|..|.-.-++-++..++.+.
T Consensus 50 W~g~Vf~yHHYHs~-aHEVl~vlrgqA~l~iGG~~G~e---l~v~~GDvlliPAGvGH~rl~sS~DF~VvGaYp 119 (163)
T COG4297 50 WRGGVFNYHHYHSG-AHEVLGVLRGQAGLQIGGADGQE---LEVGEGDVLLIPAGVGHCRLHSSADFQVVGAYP 119 (163)
T ss_pred ccccccccccccCC-cceEEEEecceeEEEecCCCCce---eeecCCCEEEEecCcccccccCCCCeEEEcccC
Confidence 345555 4789999 99999999999999999999866 369999999999999999877788888888763
No 39
>TIGR03037 anthran_nbaC 3-hydroxyanthranilate 3,4-dioxygenase. Members of this protein family, from both bacteria and eukaryotes, are the enzyme 3-hydroxyanthranilate 3,4-dioxygenase. This enzyme acts on the tryptophan metabolite 3-hydroxyanthranilate and produces 2-amino-3-carboxymuconate semialdehyde, which can rearrange spontaneously to quinolinic acid and feed into nicotinamide biosynthesis, or undergo further enzymatic degradation.
Probab=98.37 E-value=1.9e-06 Score=73.88 Aligned_cols=65 Identities=18% Similarity=0.090 Sum_probs=53.4
Q ss_pred EEEe-cCCCcccCeeeCCCEEEEEEeCeEEEEEEcCCCceEEEEEcCCCEEEeCCCcEEEEEecCCC
Q 018395 41 KLAL-EKNGFALPHYCDSARVAYVLQGSGVAGIVLPEKEEKVVAIKKGDGIALPFGVVTWWYNKEDT 106 (356)
Q Consensus 41 ~~~l-~Pg~~~~pH~h~a~e~~yVl~G~~~~~vv~~~~~~~~~~l~~GDv~~iP~G~~H~~~N~g~e 106 (356)
.+.+ .||+....|.|..+|++|+++|+..+.+.+.+ +.++..|++||++++|+|++|......++
T Consensus 31 v~~vgGpn~R~d~H~~~tdE~FyqleG~~~l~v~d~g-~~~~v~L~eGd~flvP~gvpHsP~r~~~t 96 (159)
T TIGR03037 31 VTVVGGPNARTDFHDDPGEEFFYQLKGEMYLKVTEEG-KREDVPIREGDIFLLPPHVPHSPQRPAGS 96 (159)
T ss_pred EEEeCCCCCCcccccCCCceEEEEEcceEEEEEEcCC-cEEEEEECCCCEEEeCCCCCcccccCCCc
Confidence 3344 77777778888899999999999999987643 34568999999999999999999886544
No 40
>COG4101 Predicted mannose-6-phosphate isomerase [Carbohydrate transport and metabolism]
Probab=98.28 E-value=5.5e-06 Score=66.71 Aligned_cols=84 Identities=17% Similarity=0.175 Sum_probs=67.9
Q ss_pred CceeEEEEecCCCeecccccccCCeeEEEEEeceEEEEEEccCCceEEEEEecCCcEEEEcCCcEEEE-eeCCCCeEEEE
Q 018395 222 GCGADLVRLDGKAMCSPGFSCDSALQVTYIVRGSGRAQIVGPDGKRVLETTVKAGNLFIVPRFYVVSK-IADPDGLAWFS 300 (356)
Q Consensus 222 ~~s~~~v~l~~g~~~~PH~h~~~A~ei~~v~~G~~~~~iv~~~g~~~~~~~l~~Gdv~vvP~g~~h~~-~~~~~~~~~~~ 300 (356)
+|-+-.|.+.||+-.--|.|-+ -...+||++|++++-.-+. --+..++++||+|+||+|.+|-- |++++++..+.
T Consensus 45 ~i~~~~vTi~pgAkakaH~H~~-hEtaIYvlsG~ah~w~G~r---LE~ha~~~pGDf~YiPpgVPHqp~N~S~ep~s~vI 120 (142)
T COG4101 45 GICMHLVTIPPGAKAKAHLHEE-HETAIYVLSGEAHTWYGNR---LEEHAEVGPGDFFYIPPGVPHQPANLSTEPLSAVI 120 (142)
T ss_pred eeeEEEEeeCCCcccccccccc-ccEEEEEEeceeeeeeccc---eeeeEEecCCCeEEcCCCCCCcccccCCCCeEEEE
Confidence 4667788999999999999987 6778999999998876542 13456899999999999999998 66888888887
Q ss_pred EEcCCCCce
Q 018395 301 IITTPNPIF 309 (356)
Q Consensus 301 ~~~~~~p~~ 309 (356)
..+..++..
T Consensus 121 aRsDp~~~E 129 (142)
T COG4101 121 ARSDPNPQE 129 (142)
T ss_pred EccCCCCCc
Confidence 766555544
No 41
>PF01050 MannoseP_isomer: Mannose-6-phosphate isomerase; InterPro: IPR001538 Mannose-6-phosphate isomerase or phosphomannose isomerase (5.3.1.8 from EC) (PMI) is the enzyme that catalyses the interconversion of mannose-6-phosphate and fructose-6-phosphate. In eukaryotes PMI is involved in the synthesis of GDP-mannose, a constituent of N- and O-linked glycans and GPI anchors and in prokaryotes it participates in a variety of pathways, including capsular polysaccharide biosynthesis and D-mannose metabolism. PMI's belong to the cupin superfamily whose functions range from isomerase and epimerase activities involved in the modification of cell wall carbohydrates in bacteria and plants, to non-enzymatic storage proteins in plant seeds, and transcription factors linked to congenital baldness in mammals []. Three classes of PMI have been defined []. The type II phosphomannose isomerases are bifunctional enzymes 5.3.1.8 from EC. This entry covers the isomerase region of the protein []. The guanosine diphospho-D-mannose pyrophosphorylase region is described in another InterPro entry (see IPR005836 from INTERPRO).; GO: 0016779 nucleotidyltransferase activity, 0005976 polysaccharide metabolic process
Probab=98.27 E-value=6.3e-06 Score=70.75 Aligned_cols=75 Identities=16% Similarity=0.150 Sum_probs=65.4
Q ss_pred CceeEEEEecCCCeecccccccCCeeEEEEEeceEEEEEEccCCceEEEEEecCCcEEEEcCCcEEEEee-CCCCeEEEE
Q 018395 222 GCGADLVRLDGKAMCSPGFSCDSALQVTYIVRGSGRAQIVGPDGKRVLETTVKAGNLFIVPRFYVVSKIA-DPDGLAWFS 300 (356)
Q Consensus 222 ~~s~~~v~l~~g~~~~PH~h~~~A~ei~~v~~G~~~~~iv~~~g~~~~~~~l~~Gdv~vvP~g~~h~~~~-~~~~~~~~~ 300 (356)
+..+.++.+.||.-..+|.|.. -+|.-+|++|+|.+++= + + ...+.+||.++||+|..|.+.| |+.+++++.
T Consensus 62 ~~~vkri~V~pG~~lSlq~H~~-R~E~W~Vv~G~a~v~~~---~-~--~~~~~~g~sv~Ip~g~~H~i~n~g~~~L~~IE 134 (151)
T PF01050_consen 62 GYKVKRITVNPGKRLSLQYHHH-RSEHWTVVSGTAEVTLD---D-E--EFTLKEGDSVYIPRGAKHRIENPGKTPLEIIE 134 (151)
T ss_pred CEEEEEEEEcCCCccceeeecc-cccEEEEEeCeEEEEEC---C-E--EEEEcCCCEEEECCCCEEEEECCCCcCcEEEE
Confidence 4668999999999999999998 88999999999999972 2 2 2579999999999999999955 788999999
Q ss_pred EEc
Q 018395 301 IIT 303 (356)
Q Consensus 301 ~~~ 303 (356)
+-.
T Consensus 135 Vq~ 137 (151)
T PF01050_consen 135 VQT 137 (151)
T ss_pred Eec
Confidence 863
No 42
>PF03079 ARD: ARD/ARD' family; InterPro: IPR004313 The two acireductone dioxygenase enzymes (ARD and ARD', previously known as E-2 and E-2') from Klebsiella pneumoniae share the same amino acid sequence Q9ZFE7 from SWISSPROT, but bind different metal ions: ARD binds Ni2+, ARD' binds Fe2+ []. ARD and ARD' can be experimentally interconverted by removal of the bound metal ion and reconstitution with the appropriate metal ion. The two enzymes share the same substrate, 1,2-dihydroxy-3-keto-5-(methylthio)pentene, but yield different products. ARD' yields the alpha-keto precursor of methionine (and formate), thus forming part of the ubiquitous methionine salvage pathway that converts 5'-methylthioadenosine (MTA) to methionine. This pathway is responsible for the tight control of the concentration of MTA, which is a powerful inhibitor of polyamine biosynthesis and transmethylation reactions []. ARD yields methylthiopropanoate, carbon monoxide and formate, and thus prevents the conversion of MTA to methionine. The role of the ARD catalysed reaction is unclear: methylthiopropanoate is cytotoxic, and carbon monoxide can activate guanylyl cyclase, leading to increased intracellular cGMP levels [, ]. This family also contains other proteins, whose functions are not well characterised.; GO: 0010309 acireductone dioxygenase [iron(II)-requiring] activity, 0055114 oxidation-reduction process; PDB: 1VR3_A 1ZRR_A 2HJI_A.
Probab=98.26 E-value=1e-05 Score=69.83 Aligned_cols=67 Identities=22% Similarity=0.254 Sum_probs=50.3
Q ss_pred cccCeeeCCCEEEEEEeCeEEEEEEcCCCceEEEEEcCCCEEEeCCCcEEEEEecCCCcEEEEEEee
Q 018395 49 FALPHYCDSARVAYVLQGSGVAGIVLPEKEEKVVAIKKGDGIALPFGVVTWWYNKEDTELVVLFLGD 115 (356)
Q Consensus 49 ~~~pH~h~a~e~~yVl~G~~~~~vv~~~~~~~~~~l~~GDv~~iP~G~~H~~~N~g~e~l~~l~i~~ 115 (356)
+...|.|..+|+-|+++|+|.+.+...++......+++||.+++|+|+.||..=+.+..++.+=+|.
T Consensus 84 f~~EH~H~deEvR~i~~G~g~Fdvr~~~~~wiri~~e~GDli~vP~g~~HrF~~~~~~~i~aiRlF~ 150 (157)
T PF03079_consen 84 FFEEHTHEDEEVRYIVDGSGYFDVRDGDDVWIRILCEKGDLIVVPAGTYHRFTLGESPYIKAIRLFK 150 (157)
T ss_dssp HCS-EEESS-EEEEEEECEEEEEEE-TTCEEEEEEEETTCEEEE-TT--EEEEESTTSSEEEEEEES
T ss_pred hheeEecChheEEEEeCcEEEEEEEcCCCEEEEEEEcCCCEEecCCCCceeEEcCCCCcEEEEEeec
Confidence 4568999999999999999999998776654447999999999999999999765555677776665
No 43
>PRK15457 ethanolamine utilization protein EutQ; Provisional
Probab=98.22 E-value=1.3e-05 Score=72.56 Aligned_cols=74 Identities=16% Similarity=0.184 Sum_probs=57.1
Q ss_pred cCceEEEEEEecCCCcccCeee-CCCEEEEEEeCeEEEEEEcCCCceEEEEEcCCCEEEeCCCcEEEEEecCCCcEEEEE
Q 018395 34 QGNIGAAKLALEKNGFALPHYC-DSARVAYVLQGSGVAGIVLPEKEEKVVAIKKGDGIALPFGVVTWWYNKEDTELVVLF 112 (356)
Q Consensus 34 ~~~~~~~~~~l~Pg~~~~pH~h-~a~e~~yVl~G~~~~~vv~~~~~~~~~~l~~GDv~~iP~G~~H~~~N~g~e~l~~l~ 112 (356)
+..|+++.++++-.. ..|| +.+|+.||++|+.++.+ ++ +++.+++||+++||+|..|.+.+.+ ..++++
T Consensus 154 ~s~m~aGf~~~~~~s---f~wtl~~dEi~YVLEGe~~l~I---dG--~t~~l~pGDvlfIPkGs~~hf~tp~--~aRfly 223 (233)
T PRK15457 154 GSSMAAGFMQWENAF---FPWTLNYDEIDMVLEGELHVRH---EG--ETMIAKAGDVMFIPKGSSIEFGTPS--SVRFLY 223 (233)
T ss_pred CCceeeEEEEEecCc---cceeccceEEEEEEEeEEEEEE---CC--EEEEeCCCcEEEECCCCeEEecCCC--CeeEEE
Confidence 457888889998633 3477 99999999999999987 33 4589999999999999995444443 567777
Q ss_pred EeeCC
Q 018395 113 LGDTS 117 (356)
Q Consensus 113 i~~~~ 117 (356)
+..++
T Consensus 224 V~~Pa 228 (233)
T PRK15457 224 VAWPA 228 (233)
T ss_pred EEecC
Confidence 66543
No 44
>TIGR01479 GMP_PMI mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase. This enzyme is known to be bifunctional, as both mannose-6-phosphate isomerase (EC 5.3.1.8) (PMI) and mannose-1-phosphate guanylyltransferase (EC 2.7.7.22) in Pseudomonas aeruginosa, Xanthomonas campestris, and Gluconacetobacter xylinus. The literature on the enzyme from E. coli attributes mannose-6-phosphate isomerase activity to an adjacent gene, but the present sequence has not been shown to lack the activity. The PMI domain is C-terminal.
Probab=98.21 E-value=5.5e-06 Score=84.00 Aligned_cols=76 Identities=9% Similarity=0.022 Sum_probs=65.7
Q ss_pred CceeEEEEecCCCeecccccccCCeeEEEEEeceEEEEEEccCCceEEEEEecCCcEEEEcCCcEEEE-eeCCCCeEEEE
Q 018395 222 GCGADLVRLDGKAMCSPGFSCDSALQVTYIVRGSGRAQIVGPDGKRVLETTVKAGNLFIVPRFYVVSK-IADPDGLAWFS 300 (356)
Q Consensus 222 ~~s~~~v~l~~g~~~~PH~h~~~A~ei~~v~~G~~~~~iv~~~g~~~~~~~l~~Gdv~vvP~g~~h~~-~~~~~~~~~~~ 300 (356)
++.+..+.+.||+-..+|+|+. ..|..||++|++++.+=+ + ...|++||.++||+|.+|.+ |.|++++++++
T Consensus 375 ~~~~~~~~i~PG~~~~~h~H~~-~~E~~~Vl~G~~~v~~dg---~---~~~l~~GDsi~ip~~~~H~~~N~g~~~~~~i~ 447 (468)
T TIGR01479 375 RYQVKRITVKPGEKLSLQMHHH-RAEHWIVVSGTARVTIGD---E---TLLLTENESTYIPLGVIHRLENPGKIPLELIE 447 (468)
T ss_pred CEEEEEEEECCCCccCccccCC-CceEEEEEeeEEEEEECC---E---EEEecCCCEEEECCCCcEEEEcCCCCCEEEEE
Confidence 5788999999999888999998 889899999999998543 2 35799999999999999999 45789999999
Q ss_pred EEcC
Q 018395 301 IITT 304 (356)
Q Consensus 301 ~~~~ 304 (356)
+.+.
T Consensus 448 v~~~ 451 (468)
T TIGR01479 448 VQSG 451 (468)
T ss_pred EEcC
Confidence 8753
No 45
>PF06339 Ectoine_synth: Ectoine synthase; InterPro: IPR010462 This family consists of several bacterial ectoine synthase proteins. The ectABC genes encode the diaminobutyric acid acetyltransferase (EctA), the diaminobutyric acid aminotransferase (EctB), and the ectoine synthase (EctC). Together these proteins constitute the ectoine biosynthetic pathway [].; GO: 0016836 hydro-lyase activity, 0006596 polyamine biosynthetic process
Probab=98.18 E-value=3.7e-05 Score=62.86 Aligned_cols=79 Identities=15% Similarity=0.138 Sum_probs=70.0
Q ss_pred cCceEEEEEEecCCCcccCeeeCCCEEEEEEeCeEEEEEEcCCCceEEEEEcCCCEEEeCCCcEEEEEecCCCcEEEEEE
Q 018395 34 QGNIGAAKLALEKNGFALPHYCDSARVAYVLQGSGVAGIVLPEKEEKVVAIKKGDGIALPFGVVTWWYNKEDTELVVLFL 113 (356)
Q Consensus 34 ~~~~~~~~~~l~Pg~~~~pH~h~a~e~~yVl~G~~~~~vv~~~~~~~~~~l~~GDv~~iP~G~~H~~~N~g~e~l~~l~i 113 (356)
+.|+|+-.-+|.||+-...||-+--|-+||++|+|.+..... + +++.+++|.++.+.+--.|++.... +++++|+
T Consensus 32 gmGFS~h~T~i~aGtet~~~YknHlEAvyci~G~Gev~~~~~-G--~~~~i~pGt~YaLd~hD~H~lra~~--dm~~vCV 106 (126)
T PF06339_consen 32 GMGFSFHETTIYAGTETHIHYKNHLEAVYCIEGEGEVEDLDT-G--EVHPIKPGTMYALDKHDRHYLRAKT--DMRLVCV 106 (126)
T ss_pred CCCEEEEEEEEeCCCeeEEEecCceEEEEEEeceEEEEEccC-C--cEEEcCCCeEEecCCCccEEEEecC--CEEEEEE
Confidence 578999999999999999999999999999999999987643 2 4599999999999999999999865 6999999
Q ss_pred eeCC
Q 018395 114 GDTS 117 (356)
Q Consensus 114 ~~~~ 117 (356)
|.++
T Consensus 107 FnPp 110 (126)
T PF06339_consen 107 FNPP 110 (126)
T ss_pred cCCC
Confidence 9753
No 46
>PF14499 DUF4437: Domain of unknown function (DUF4437); PDB: 2QDR_A.
Probab=98.18 E-value=1.6e-05 Score=73.49 Aligned_cols=210 Identities=16% Similarity=0.176 Sum_probs=95.3
Q ss_pred CceEEEEEEecCCCcccCeeeCCCEEEEEEeCeEEEEEEcCCCceEEEEEcCCCEEEeCCCcEEEEEecCCCcEEEEEEe
Q 018395 35 GNIGAAKLALEKNGFALPHYCDSARVAYVLQGSGVAGIVLPEKEEKVVAIKKGDGIALPFGVVTWWYNKEDTELVVLFLG 114 (356)
Q Consensus 35 ~~~~~~~~~l~Pg~~~~pH~h~a~e~~yVl~G~~~~~vv~~~~~~~~~~l~~GDv~~iP~G~~H~~~N~g~e~l~~l~i~ 114 (356)
.+.+..++++++|-..+||+|++++-+||++|....+ +.+.....|.+|.-+..|+|..|+....+++.+.++.+.
T Consensus 34 ~g~~~~~vkf~~g~~~pph~H~~~~~~~Vi~G~~~~~----~~~a~~~~l~~Gsy~~~PaG~~h~~~~~~~~~~~~~e~g 109 (251)
T PF14499_consen 34 DGPSGMRVKFPAGFSSPPHIHNADYRGTVISGELHNG----DPKAAAMWLPAGSYWFQPAGEPHITAAEGETNLLFIEIG 109 (251)
T ss_dssp TS-EEEEEEE-TT-EE--BEESS-EEEEEEESEEEET----TEE-----E-TTEEEEE-TT-EEEETTS-EE-EEEEE-S
T ss_pred CCcceEEEEcCCCccCCCcceeeeEEEEEEEeEEEcC----CCcccceecCCCceEeccCCCceeeeccCccEEEEEEeC
Confidence 4667889999999999999999999999999986552 222223569999999999999999888777766665432
Q ss_pred eCCCCCCCCceeEEeecccccccccCcHHHHHhhccCCHHHHHHhhcccCCceEEEcCCCCc-CCCCCcccCCCceeecc
Q 018395 115 DTSKGHKAGEFTNFFLTGANGIFTGFSTEFVSRAWDLDENTVKTLVGKQTGKGIVKLDANAK-LPEPKKEHRDGMAFNCE 193 (356)
Q Consensus 115 ~~~~~~~pg~~~~f~lag~~s~l~~~~~~vl~~af~~~~~~~~~l~~~q~~~~iv~~~~~~~-~~~p~~~~~~~~~~~l~ 193 (356)
.. | |. + -|. +++|.-.+.-+ +.....|+=++..+. ...
T Consensus 110 ~g-----p--~~---v---------~p~---~~~~~~~e~p~-----n~~~~~ivwld~~dl~W~~-------------- 148 (251)
T PF14499_consen 110 EG-----P--YD---V---------KPS---EEAFDNGERPI-----NVDKDNIVWLDASDLEWIS-------------- 148 (251)
T ss_dssp ----------EE------------------------SS--TT-------GGG-EEEEECCCS--EE--------------
T ss_pred CC-----c--cc---c---------ccc---ccccccccccc-----ccccccceEeccccCCccc--------------
Confidence 21 1 11 0 010 01221111111 111123443332211 000
Q ss_pred CCCCCcccCCCcEEEEeCCCCCCCccccCceeEEEEecCCCeecccccccCCeeEEEEEeceEEEEEEccCCceEEEEEe
Q 018395 194 EAPLDVDIKNGGRVVLLNTKNLPLVGEVGCGADLVRLDGKAMCSPGFSCDSALQVTYIVRGSGRAQIVGPDGKRVLETTV 273 (356)
Q Consensus 194 ~~~~~~~~~~gG~~~~~~~~~~p~l~~l~~s~~~v~l~~g~~~~PH~h~~~A~ei~~v~~G~~~~~iv~~~g~~~~~~~l 273 (356)
.++. ...+-.+..+-.. | ++-.+....++|..|---.+|+|+. .+=.|||+|+...++-.-.. ...|
T Consensus 149 -~~~~--~~~g~~~a~Lwgd--~--~~g~~~gll~kLPagf~g~i~~h~~--~eraVvI~G~~~~~~~~~~~----~~~L 215 (251)
T PF14499_consen 149 -APPG--PPPGAQIAFLWGD--P--NTGQYTGLLLKLPAGFTGRIHTHAS--NERAVVISGELDYQSYGASN----FGTL 215 (251)
T ss_dssp --SSS--TT-SEEEEEEEE---T--TS-EE-EEEEE-SSEE--SEEE--S---EEEEEEEEEEEETTEEEET----TEEE
T ss_pred -cCCC--CCCcceEEEEecC--C--CCCceeeEEEEcCCCCcCceeccCC--ceEEEEEEeEEEEeecccCC----Cccc
Confidence 0000 0111112111110 0 0001334566777776678999974 79999999999886554211 2479
Q ss_pred cCCcEEEEcCCcEEEEeeCCCCeEEEEEE
Q 018395 274 KAGNLFIVPRFYVVSKIADPDGLAWFSII 302 (356)
Q Consensus 274 ~~Gdv~vvP~g~~h~~~~~~~~~~~~~~~ 302 (356)
.+|.-|.-|....|-+..+++++.++.-.
T Consensus 216 ~~GSYf~s~~~~~H~~~~~e~~~vlyIRt 244 (251)
T PF14499_consen 216 DPGSYFGSPGHITHGIFITEDECVLYIRT 244 (251)
T ss_dssp EE-TT-EE--E------EESS-EEEEEEE
T ss_pred cCCcccccCCcccccccccCCCEEEEEEE
Confidence 99999999999999986556666666543
No 47
>PF02311 AraC_binding: AraC-like ligand binding domain; InterPro: IPR003313 This entry defines the arabinose-binding and dimerisation domain of the bacterial gene regulatory protein AraC. The crystal structure of the arabinose-binding and dimerization domain of the Escherichia coli gene regulatory protein AraC was determined in the presence and absence of L-arabinose. The arabinose-bound molecule shows that the protein adopts an unusual fold, binding sugar within a beta barrel and completely burying the arabinose with the amino-terminal arm of the protein. Dimer contacts in the presence of arabinose are mediated by an antiparallel coiled-coil. In the uncomplexed protein, the amino-terminal arm is disordered, uncovering the sugar-binding pocket and allowing it to serve as an oligomerization interface [].; GO: 0006355 regulation of transcription, DNA-dependent; PDB: 1XJA_B 2ARA_A 2AAC_B 2ARC_A.
Probab=98.15 E-value=7e-06 Score=67.43 Aligned_cols=66 Identities=24% Similarity=0.336 Sum_probs=48.3
Q ss_pred CCCcccCeeeCCCEEEEEEeCeEEEEEEcCCCceEEEEEcCCCEEEeCCCcEEEEEecCCCcEEEEEEeeC
Q 018395 46 KNGFALPHYCDSARVAYVLQGSGVAGIVLPEKEEKVVAIKKGDGIALPFGVVTWWYNKEDTELVVLFLGDT 116 (356)
Q Consensus 46 Pg~~~~pH~h~a~e~~yVl~G~~~~~vv~~~~~~~~~~l~~GDv~~iP~G~~H~~~N~g~e~l~~l~i~~~ 116 (356)
|+....+|+|+.-++.||++|++.+.+ ++ +.+.+++||++.+|+|..|.+...+++++....+...
T Consensus 12 ~~~~~~~h~h~~~~i~~v~~G~~~~~~---~~--~~~~l~~g~~~li~p~~~H~~~~~~~~~~~~~~i~~~ 77 (136)
T PF02311_consen 12 PNFEFPPHWHDFYEIIYVLSGEGTLHI---DG--QEYPLKPGDLFLIPPGQPHSYYPDSNEPWEYYWIYFS 77 (136)
T ss_dssp TT-SEEEETT-SEEEEEEEEE-EEEEE---TT--EEEEE-TT-EEEE-TTS-EEEEE-TTSEEEEEEEEE-
T ss_pred CCCccCCEECCCEEEEEEeCCEEEEEE---CC--EEEEEECCEEEEecCCccEEEecCCCCCEEEEEEEEC
Confidence 455668999999999999999999976 33 4589999999999999999999887777887777664
No 48
>PF06560 GPI: Glucose-6-phosphate isomerase (GPI); InterPro: IPR010551 This entry consists of several bacterial and archaeal glucose-6-phosphate isomerase (GPI) proteins (5.3.1.9 from EC), which are involved in glycolysis and in gluconeogenesis and catalyse the conversion of D-glucose 6-phosphate to D-fructose 6-phosphate. The deduced amino acid sequence of the first archaeal PGI isolated from Pyrococcus furiosus revealed that it is not related to its eukaryotic and many of its bacterial counterparts. In contrast, this archaeal PGI shares similarity with the cupin superfamily that consists of a variety of proteins that are generally involved in sugar metabolism in both prokaryotes and eukaryotes [].; GO: 0004347 glucose-6-phosphate isomerase activity, 0006094 gluconeogenesis, 0006096 glycolysis, 0005737 cytoplasm; PDB: 1J3Q_B 1J3R_B 1J3P_A 2GC0_A 1X8E_A 1X82_A 1QY4_B 2GC2_B 1QXJ_A 1QXR_B ....
Probab=98.11 E-value=2.3e-05 Score=69.11 Aligned_cols=70 Identities=16% Similarity=0.244 Sum_probs=47.7
Q ss_pred eccccccc-----CCeeEEEEEeceEEEEEEccCCc---eEEEEEecCCcEEEEcCCcEEEE-eeCCCCeEEEEEEcCC
Q 018395 236 CSPGFSCD-----SALQVTYIVRGSGRAQIVGPDGK---RVLETTVKAGNLFIVPRFYVVSK-IADPDGLAWFSIITTP 305 (356)
Q Consensus 236 ~~PH~h~~-----~A~ei~~v~~G~~~~~iv~~~g~---~~~~~~l~~Gdv~vvP~g~~h~~-~~~~~~~~~~~~~~~~ 305 (356)
..-|||+. +-.|+-+|++|+|.+-+-++.+. +.+.-.+++||+++||.+|.|.. |.|++++.+.....++
T Consensus 69 T~GH~H~~~~~~~~~pEvY~vl~G~g~~lLq~~~~~~~~~~~~v~~~~G~~v~IPp~yaH~tIN~g~~~L~~~~~~~~~ 147 (182)
T PF06560_consen 69 TKGHYHPISPCGLSYPEVYEVLSGEGLILLQKEEGDDVGDVIAVEAKPGDVVYIPPGYAHRTINTGDEPLVFAAWVPRD 147 (182)
T ss_dssp ---BB-SS----TT--EEEEEEESSEEEEEE-TTS-----EEEEEE-TTEEEEE-TT-EEEEEE-SSS-EEEEEEEETT
T ss_pred CCCccCCccccCCCCCcEEEEEeCEEEEEEEecCCCcceeEEEEEeCCCCEEEECCCceEEEEECCCCcEEEEEEEecC
Confidence 44588874 46799999999999999999872 34556899999999999999999 5588889988876433
No 49
>PRK09943 DNA-binding transcriptional repressor PuuR; Provisional
Probab=98.10 E-value=1.8e-05 Score=70.30 Aligned_cols=73 Identities=11% Similarity=-0.020 Sum_probs=58.1
Q ss_pred ceeEEEEecCCCeec-ccccccCCeeEEEEEeceEEEEEEccCCceEEEEEecCCcEEEEcCCcEEEEee-CCCCeEEEE
Q 018395 223 CGADLVRLDGKAMCS-PGFSCDSALQVTYIVRGSGRAQIVGPDGKRVLETTVKAGNLFIVPRFYVVSKIA-DPDGLAWFS 300 (356)
Q Consensus 223 ~s~~~v~l~~g~~~~-PH~h~~~A~ei~~v~~G~~~~~iv~~~g~~~~~~~l~~Gdv~vvP~g~~h~~~~-~~~~~~~~~ 300 (356)
+.+....+.||+-.. .||| . ..|+.||++|++.+.+-+ + ...|++||.++||.+.+|...+ ++++++++.
T Consensus 107 ~~~~~~~~~pg~~~~~~~~h-~-~~E~~~Vl~G~~~~~~~~----~--~~~l~~Gd~~~~~~~~~H~~~n~~~~~~~~l~ 178 (185)
T PRK09943 107 LAMIFETYQPGTTTGERIKH-Q-GEEIGTVLEGEIVLTING----Q--DYHLVAGQSYAINTGIPHSFSNTSAGICRIIS 178 (185)
T ss_pred eEEEEEEccCCCCccccccc-C-CcEEEEEEEeEEEEEECC----E--EEEecCCCEEEEcCCCCeeeeCCCCCCeEEEE
Confidence 556667889998654 5556 4 689999999999988632 2 3579999999999999999844 678898888
Q ss_pred EEc
Q 018395 301 IIT 303 (356)
Q Consensus 301 ~~~ 303 (356)
+.+
T Consensus 179 ~~~ 181 (185)
T PRK09943 179 AHT 181 (185)
T ss_pred EeC
Confidence 764
No 50
>PF12973 Cupin_7: ChrR Cupin-like domain; PDB: 3O14_B 2Z2S_F 2Q1Z_B 3EBR_A.
Probab=98.10 E-value=1.3e-05 Score=62.82 Aligned_cols=66 Identities=23% Similarity=0.175 Sum_probs=52.1
Q ss_pred CceEEEEEEecCCCcccCeeeCCCEEEEEEeCeEEEEEEcCCCceEEEEEcCCCEEEeCCCcEEEEEecCCCcEEEE
Q 018395 35 GNIGAAKLALEKNGFALPHYCDSARVAYVLQGSGVAGIVLPEKEEKVVAIKKGDGIALPFGVVTWWYNKEDTELVVL 111 (356)
Q Consensus 35 ~~~~~~~~~l~Pg~~~~pH~h~a~e~~yVl~G~~~~~vv~~~~~~~~~~l~~GDv~~iP~G~~H~~~N~g~e~l~~l 111 (356)
.+..+..++++||+..+.|.|.+.|.+|||+|+.... + ....+||.++.|+|..|.... ++.+.++
T Consensus 22 ~g~~~~L~r~~pG~~~p~H~H~g~ee~~VLeG~~~d~-----~----~~~~~G~~~~~p~g~~h~~~s--~~gc~~~ 87 (91)
T PF12973_consen 22 TGERVSLLRLEPGASLPRHRHPGGEEILVLEGELSDG-----D----GRYGAGDWLRLPPGSSHTPRS--DEGCLIL 87 (91)
T ss_dssp TTEEEEEEEE-TTEEEEEEEESS-EEEEEEECEEEET-----T----CEEETTEEEEE-TTEEEEEEE--SSCEEEE
T ss_pred ccCEEEEEEECCCCCcCccCCCCcEEEEEEEEEEEEC-----C----ccCCCCeEEEeCCCCccccCc--CCCEEEE
Confidence 4678899999999999999999899999999998752 1 356999999999999999985 4444443
No 51
>PRK15460 cpsB mannose-1-phosphate guanyltransferase; Provisional
Probab=98.09 E-value=1.4e-05 Score=80.98 Aligned_cols=76 Identities=9% Similarity=0.010 Sum_probs=65.5
Q ss_pred CceeEEEEecCCCeecccccccCCeeEEEEEeceEEEEEEccCCceEEEEEecCCcEEEEcCCcEEEE-eeCCCCeEEEE
Q 018395 222 GCGADLVRLDGKAMCSPGFSCDSALQVTYIVRGSGRAQIVGPDGKRVLETTVKAGNLFIVPRFYVVSK-IADPDGLAWFS 300 (356)
Q Consensus 222 ~~s~~~v~l~~g~~~~PH~h~~~A~ei~~v~~G~~~~~iv~~~g~~~~~~~l~~Gdv~vvP~g~~h~~-~~~~~~~~~~~ 300 (356)
++.+.++.+.||+-...|+|.. ..|..||++|++.+++-+ + ...|.+||.++||+|.+|.+ |.|++++++++
T Consensus 384 ~~~v~~i~v~PG~~~~~~~H~~-~~E~~~VlsG~~~v~idg----~--~~~L~~GDSi~ip~g~~H~~~N~g~~~l~iI~ 456 (478)
T PRK15460 384 RYQVKRITVKPGEGLSVQMHHH-RAEHWVVVAGTAKVTIDG----D--IKLLGENESIYIPLGATHCLENPGKIPLDLIE 456 (478)
T ss_pred cEEEEEEEECCCCcCCcCCCCC-CceEEEEEeeEEEEEECC----E--EEEecCCCEEEECCCCcEEEEcCCCCCEEEEE
Confidence 5778999999999777888887 779999999999998765 2 35799999999999999999 45789999999
Q ss_pred EEcC
Q 018395 301 IITT 304 (356)
Q Consensus 301 ~~~~ 304 (356)
+.+.
T Consensus 457 V~~g 460 (478)
T PRK15460 457 VRSG 460 (478)
T ss_pred EEcC
Confidence 8643
No 52
>COG1791 Uncharacterized conserved protein, contains double-stranded beta-helix domain [Function unknown]
Probab=98.08 E-value=2.5e-05 Score=66.95 Aligned_cols=68 Identities=24% Similarity=0.428 Sum_probs=58.2
Q ss_pred cccCeeeCCCEEEEEEeCeEEEEEEcCCCceEEEEEcCCCEEEeCCCcEEEEEecCCCcEEEEEEeeC
Q 018395 49 FALPHYCDSARVAYVLQGSGVAGIVLPEKEEKVVAIKKGDGIALPFGVVTWWYNKEDTELVVLFLGDT 116 (356)
Q Consensus 49 ~~~pH~h~a~e~~yVl~G~~~~~vv~~~~~~~~~~l~~GDv~~iP~G~~H~~~N~g~e~l~~l~i~~~ 116 (356)
+..-|.|..+|+-|++.|+|...+..+++++....+.+||.+.+|+|+-||+-=+.+-.++.+-+|.+
T Consensus 87 F~~EH~H~d~EvRy~vaG~GiF~v~~~d~~~~~i~c~~gDLI~vP~gi~HwFtlt~~~~f~AvRlF~~ 154 (181)
T COG1791 87 FLQEHLHTDDEVRYFVAGEGIFDVHSPDGKVYQIRCEKGDLISVPPGIYHWFTLTESPNFKAVRLFTE 154 (181)
T ss_pred HHHHhccCCceEEEEEecceEEEEECCCCcEEEEEEccCCEEecCCCceEEEEccCCCcEEEEEEeeC
Confidence 34578999999999999999999999888887788999999999999999987666656777766654
No 53
>COG3257 GlxB Uncharacterized protein, possibly involved in glyoxylate utilization [General function prediction only]
Probab=98.08 E-value=0.00054 Score=61.11 Aligned_cols=191 Identities=16% Similarity=0.172 Sum_probs=122.8
Q ss_pred eEEEEEEecCCC-cccCeee-CCCEEEEEEeCeEEEEEEcCCCceEEEEEcCCCEEEeCCCcEEEEEecCCCcEEEEEEe
Q 018395 37 IGAAKLALEKNG-FALPHYC-DSARVAYVLQGSGVAGIVLPEKEEKVVAIKKGDGIALPFGVVTWWYNKEDTELVVLFLG 114 (356)
Q Consensus 37 ~~~~~~~l~Pg~-~~~pH~h-~a~e~~yVl~G~~~~~vv~~~~~~~~~~l~~GDv~~iP~G~~H~~~N~g~e~l~~l~i~ 114 (356)
++--.+++.|++ ...|--- .++.++||++|+..+.+ ++ +++.|++|+-.++|+|..|.+.|...++.+|-.+-
T Consensus 61 F~qyive~~p~GGs~~~e~d~~ae~~lfVv~Ge~tv~~---~G--~th~l~eggyaylPpgs~~~~~N~~~~~~rfhw~r 135 (264)
T COG3257 61 FVQYIVELHPNGGSQRPEGDEGAETFLFVVSGEITVKA---EG--KTHALREGGYAYLPPGSGWTLRNAQKEDSRFHWIR 135 (264)
T ss_pred hhhheEEECCCCCCCCCCCCCcceEEEEEEeeeEEEEE---cC--eEEEeccCCeEEeCCCCcceEeeccCCceEEEEEe
Confidence 334578998887 5566666 89999999999999987 33 45899999999999999999999988888887764
Q ss_pred eCCCCCCCCceeEEeecccccccccCcHHHHHhhccCCHHHHHHhhcccCCceEEEcCCCCcCCCCCcccCCCceeeccC
Q 018395 115 DTSKGHKAGEFTNFFLTGANGIFTGFSTEFVSRAWDLDENTVKTLVGKQTGKGIVKLDANAKLPEPKKEHRDGMAFNCEE 194 (356)
Q Consensus 115 ~~~~~~~pg~~~~f~lag~~s~l~~~~~~vl~~af~~~~~~~~~l~~~q~~~~iv~~~~~~~~~~p~~~~~~~~~~~l~~ 194 (356)
..- + .+-| + |-...++. ++....+.|
T Consensus 136 k~Y--------~--~VdG-------~----------------------~~P~~~~~-Ne~ei~~~~-------------- 161 (264)
T COG3257 136 KRY--------Q--PVEG-------V----------------------QAPELVSG-NESEIEPSP-------------- 161 (264)
T ss_pred ecc--------e--eecC-------c----------------------cCCcceec-ChhhCCCCC--------------
Confidence 311 1 0001 0 00011111 100000001
Q ss_pred CCCCcccCCCcEEEEeCCCCCCCccccCceeEEEEecCCCeec-ccccccCCeeEEEEEeceEEEEEEccCCceEEEEEe
Q 018395 195 APLDVDIKNGGRVVLLNTKNLPLVGEVGCGADLVRLDGKAMCS-PGFSCDSALQVTYIVRGSGRAQIVGPDGKRVLETTV 273 (356)
Q Consensus 195 ~~~~~~~~~gG~~~~~~~~~~p~l~~l~~s~~~v~l~~g~~~~-PH~h~~~A~ei~~v~~G~~~~~iv~~~g~~~~~~~l 273 (356)
.-..+|-+.+.++++++.. +|-+..+.++|||..+ --.|.. -| =+||++|++.-..=. .- -.+
T Consensus 162 ----m~gtdg~~attv~P~d~r~----Dmhv~ivsFePGa~ip~aEtHvm-EH-GlyvLeGk~vYrLn~----dw--v~V 225 (264)
T COG3257 162 ----MEGTDGVIATTVLPKELRF----DMHVHIVSFEPGASIPYAETHVM-EH-GLYVLEGKGVYRLNN----NW--VPV 225 (264)
T ss_pred ----CCCCCCeEEEeeCccccCc----ceEEEEEEecCCcccchhhhhhh-hc-ceEEEecceEEeecC----ce--EEe
Confidence 0013355566666655432 6788999999999873 223333 22 479999998544321 11 379
Q ss_pred cCCcEEEEcCCcEEEEeeC-CCCeEEEEEE
Q 018395 274 KAGNLFIVPRFYVVSKIAD-PDGLAWFSII 302 (356)
Q Consensus 274 ~~Gdv~vvP~g~~h~~~~~-~~~~~~~~~~ 302 (356)
++||.+..-+..+-+.-++ ...+.++-..
T Consensus 226 ~aGD~mwm~A~cpQacyagG~g~frYLlyK 255 (264)
T COG3257 226 EAGDYIWMGAYCPQACYAGGRGAFRYLLYK 255 (264)
T ss_pred ecccEEEeeccChhhhccCCCCceEEEEEe
Confidence 9999999888888777664 4557776643
No 54
>COG4297 Uncharacterized protein containing double-stranded beta helix domain [Function unknown]
Probab=97.96 E-value=2.2e-05 Score=64.86 Aligned_cols=67 Identities=22% Similarity=0.266 Sum_probs=51.2
Q ss_pred ecCCCcc-cCeee-CCCEEEEEEeCeEEEEEEcCCCceEEEEEcCCCEEEeCCCcEEEEEecCCCcEEEEEE
Q 018395 44 LEKNGFA-LPHYC-DSARVAYVLQGSGVAGIVLPEKEEKVVAIKKGDGIALPFGVVTWWYNKEDTELVVLFL 113 (356)
Q Consensus 44 l~Pg~~~-~pH~h-~a~e~~yVl~G~~~~~vv~~~~~~~~~~l~~GDv~~iP~G~~H~~~N~g~e~l~~l~i 113 (356)
+-.|+.+ -.||| .+.|++.|++|++.+.+-.+++.+ .++.+||++++|+|+-|.- +..+-++.++..
T Consensus 49 sW~g~Vf~yHHYHs~aHEVl~vlrgqA~l~iGG~~G~e--l~v~~GDvlliPAGvGH~r-l~sS~DF~VvGa 117 (163)
T COG4297 49 SWRGGVFNYHHYHSGAHEVLGVLRGQAGLQIGGADGQE--LEVGEGDVLLIPAGVGHCR-LHSSADFQVVGA 117 (163)
T ss_pred cccccccccccccCCcceEEEEecceeEEEecCCCCce--eeecCCCEEEEecCccccc-ccCCCCeEEEcc
Confidence 3344544 46789 999999999999999997766644 7999999999999999964 444445555543
No 55
>TIGR02451 anti_sig_ChrR anti-sigma factor, putative, ChrR family. The member of this family from Rhodobacter sphaeroides has been shown both to form a complex with sigma(E) and to negatively regulate tetrapyrrole biosynthesis. This protein likely contains (at least) two distinct functional domains; several smaller homologs (excluded by the model) show homology only to the C-terminal, including a motif PxHxHxGxE.
Probab=97.94 E-value=2.9e-05 Score=70.64 Aligned_cols=71 Identities=17% Similarity=-0.011 Sum_probs=62.1
Q ss_pred ceEEEEEEecCCCcccCeeeCCCEEEEEEeCeEEEEEEcCCCceEEEEEcCCCEEEeCCCcEEEEEecCCCcEEEEEEee
Q 018395 36 NIGAAKLALEKNGFALPHYCDSARVAYVLQGSGVAGIVLPEKEEKVVAIKKGDGIALPFGVVTWWYNKEDTELVVLFLGD 115 (356)
Q Consensus 36 ~~~~~~~~l~Pg~~~~pH~h~a~e~~yVl~G~~~~~vv~~~~~~~~~~l~~GDv~~iP~G~~H~~~N~g~e~l~~l~i~~ 115 (356)
+..+..++++||+.++.|.|.+.|+.+||+|... +.. ..+.+||.+..|+|..|...+.+++++.++++.+
T Consensus 126 ~~~v~Ll~i~pG~~~p~H~H~G~E~tlVLeG~f~----de~-----g~y~~Gd~i~~p~~~~H~p~a~~~~~Cicl~v~d 196 (215)
T TIGR02451 126 NARVRLLYIEAGQSIPQHTHKGFELTLVLHGAFS----DET-----GVYGVGDFEEADGSVQHQPRTVSGGDCLCLAVLD 196 (215)
T ss_pred CcEEEEEEECCCCccCCCcCCCcEEEEEEEEEEE----cCC-----CccCCCeEEECCCCCCcCcccCCCCCeEEEEEec
Confidence 4578899999999999999999999999999953 221 4789999999999999999999888899888765
No 56
>TIGR03037 anthran_nbaC 3-hydroxyanthranilate 3,4-dioxygenase. Members of this protein family, from both bacteria and eukaryotes, are the enzyme 3-hydroxyanthranilate 3,4-dioxygenase. This enzyme acts on the tryptophan metabolite 3-hydroxyanthranilate and produces 2-amino-3-carboxymuconate semialdehyde, which can rearrange spontaneously to quinolinic acid and feed into nicotinamide biosynthesis, or undergo further enzymatic degradation.
Probab=97.88 E-value=4.2e-05 Score=65.69 Aligned_cols=52 Identities=15% Similarity=0.353 Sum_probs=42.4
Q ss_pred ccccccCCeeEEEEEeceEEEEEEccCCceEEEEEecCCcEEEEcCCcEEEEee
Q 018395 238 PGFSCDSALQVTYIVRGSGRAQIVGPDGKRVLETTVKAGNLFIVPRFYVVSKIA 291 (356)
Q Consensus 238 PH~h~~~A~ei~~v~~G~~~~~iv~~~g~~~~~~~l~~Gdv~vvP~g~~h~~~~ 291 (356)
.+||.+...|+.|+++|+..+.+.+....+ +-.|++||++++|+|.+|.-.+
T Consensus 41 ~d~H~~~tdE~FyqleG~~~l~v~d~g~~~--~v~L~eGd~flvP~gvpHsP~r 92 (159)
T TIGR03037 41 TDFHDDPGEEFFYQLKGEMYLKVTEEGKRE--DVPIREGDIFLLPPHVPHSPQR 92 (159)
T ss_pred cccccCCCceEEEEEcceEEEEEEcCCcEE--EEEECCCCEEEeCCCCCccccc
Confidence 456665489999999999999998854223 4589999999999999999754
No 57
>PF05523 FdtA: WxcM-like, C-terminal ; InterPro: IPR008894 This entry includes FdtA (Q6T1W8 from SWISSPROT) from Aneurinibacillus thermoaerophilus, which has been characterised as a dTDP-6-deoxy-3,4-keto-hexulose isomerase []. It also includes WxcM (Q93S92 from SWISSPROT) from Xanthomonas campestris pv campestris) []. ; PDB: 2PAK_A 2PAE_A 2PA7_B 2PAM_A.
Probab=97.84 E-value=0.00033 Score=58.75 Aligned_cols=99 Identities=16% Similarity=0.051 Sum_probs=56.7
Q ss_pred eeeCCCeEEEEeCCCCCCCcccCceEEEEE-EecCCCcccCeee-CCCEEEEEEeCeEEEEEEcCCCceEEEEEcCC-CE
Q 018395 13 VYGGNGGSYHAWCPNELPMLRQGNIGAAKL-ALEKNGFALPHYC-DSARVAYVLQGSGVAGIVLPEKEEKVVAIKKG-DG 89 (356)
Q Consensus 13 ~~~~~~G~i~~~~~~~~p~l~~~~~~~~~~-~l~Pg~~~~pH~h-~a~e~~yVl~G~~~~~vv~~~~~~~~~~l~~G-Dv 89 (356)
.+..+.|.+......+...+.-. ++-.+ ..++|..+..|+| ...++++|++|+..+.+-+..+ ...+.|..- ..
T Consensus 10 ~~~D~RG~L~~~e~~~~ipf~i~--rvy~i~~~~~~~~RG~H~Hk~~~~~~~~l~Gs~~v~~~d~~~-~~~~~L~~~~~~ 86 (131)
T PF05523_consen 10 KISDERGSLSVIERFDDIPFEIK--RVYYIYNVPPGVIRGWHAHKKTTQWFIVLSGSFKVVLDDGRE-EEEFILDEPNKG 86 (131)
T ss_dssp EEEETTEEEEEEETTTSSSS-----EEEEEES--SS--EEEEEESS--EEEEEEES-EEEEEE-SS--EEEEEE--TTEE
T ss_pred ceeCCCCcEEEEeccCCCCCCcc--EEEEEEcCCCCCcccccccccccEEEEEEeCEEEEEEecCCC-cEEEEECCCCeE
Confidence 34556788877655432223211 33344 4566666999999 9999999999999998755443 356778655 59
Q ss_pred EEeCCCcEEEEEecCCCcEEEEEEee
Q 018395 90 IALPFGVVTWWYNKEDTELVVLFLGD 115 (356)
Q Consensus 90 ~~iP~G~~H~~~N~g~e~l~~l~i~~ 115 (356)
++||+|+.|.+.|.+++ +.++.+.+
T Consensus 87 L~Ippg~w~~~~~~s~~-svlLv~as 111 (131)
T PF05523_consen 87 LYIPPGVWHGIKNFSED-SVLLVLAS 111 (131)
T ss_dssp EEE-TT-EEEEE---TT--EEEEEES
T ss_pred EEECCchhhHhhccCCC-cEEEEEcC
Confidence 99999999999998777 66666544
No 58
>PRK13264 3-hydroxyanthranilate 3,4-dioxygenase; Provisional
Probab=97.83 E-value=6.1e-05 Score=65.74 Aligned_cols=66 Identities=17% Similarity=0.232 Sum_probs=50.0
Q ss_pred cCCCeecccccccCCeeEEEEEeceEEEEEEccCCceEEEEEecCCcEEEEcCCcEEEEeeCCCCeEEEEE
Q 018395 231 DGKAMCSPGFSCDSALQVTYIVRGSGRAQIVGPDGKRVLETTVKAGNLFIVPRFYVVSKIADPDGLAWFSI 301 (356)
Q Consensus 231 ~~g~~~~PH~h~~~A~ei~~v~~G~~~~~iv~~~g~~~~~~~l~~Gdv~vvP~g~~h~~~~~~~~~~~~~~ 301 (356)
.||.-..-|+|+ +.|+.|+++|+.++.+.+. |+ .-+..|++||++++|+|.+|.-.+ .++...+.+
T Consensus 42 Gpn~r~d~H~~~--tdE~FyqleG~~~l~v~d~-g~-~~~v~L~eGd~fllP~gvpHsP~r-~~~tv~Lvi 107 (177)
T PRK13264 42 GPNARTDFHYDP--GEEFFYQLEGDMYLKVQED-GK-RRDVPIREGEMFLLPPHVPHSPQR-EAGSIGLVI 107 (177)
T ss_pred cCCcccccccCC--CceEEEEECCeEEEEEEcC-Cc-eeeEEECCCCEEEeCCCCCcCCcc-CCCeEEEEE
Confidence 566666668876 6899999999999999994 33 124589999999999999999754 233443333
No 59
>PF03079 ARD: ARD/ARD' family; InterPro: IPR004313 The two acireductone dioxygenase enzymes (ARD and ARD', previously known as E-2 and E-2') from Klebsiella pneumoniae share the same amino acid sequence Q9ZFE7 from SWISSPROT, but bind different metal ions: ARD binds Ni2+, ARD' binds Fe2+ []. ARD and ARD' can be experimentally interconverted by removal of the bound metal ion and reconstitution with the appropriate metal ion. The two enzymes share the same substrate, 1,2-dihydroxy-3-keto-5-(methylthio)pentene, but yield different products. ARD' yields the alpha-keto precursor of methionine (and formate), thus forming part of the ubiquitous methionine salvage pathway that converts 5'-methylthioadenosine (MTA) to methionine. This pathway is responsible for the tight control of the concentration of MTA, which is a powerful inhibitor of polyamine biosynthesis and transmethylation reactions []. ARD yields methylthiopropanoate, carbon monoxide and formate, and thus prevents the conversion of MTA to methionine. The role of the ARD catalysed reaction is unclear: methylthiopropanoate is cytotoxic, and carbon monoxide can activate guanylyl cyclase, leading to increased intracellular cGMP levels [, ]. This family also contains other proteins, whose functions are not well characterised.; GO: 0010309 acireductone dioxygenase [iron(II)-requiring] activity, 0055114 oxidation-reduction process; PDB: 1VR3_A 1ZRR_A 2HJI_A.
Probab=97.81 E-value=0.00018 Score=62.05 Aligned_cols=68 Identities=19% Similarity=0.194 Sum_probs=51.2
Q ss_pred eecccccccCCeeEEEEEeceEEEEEEccCCceEEEEEecCCcEEEEcCCcEEEEeeCC-CCeEEEEEEcCC
Q 018395 235 MCSPGFSCDSALQVTYIVRGSGRAQIVGPDGKRVLETTVKAGNLFIVPRFYVVSKIADP-DGLAWFSIITTP 305 (356)
Q Consensus 235 ~~~PH~h~~~A~ei~~v~~G~~~~~iv~~~g~~~~~~~l~~Gdv~vvP~g~~h~~~~~~-~~~~~~~~~~~~ 305 (356)
+...|.|.. .|+-|+++|+|...+-+.++ +-++-.+++||.++||+|..|+...+. ..++.+-+|+.+
T Consensus 84 f~~EH~H~d--eEvR~i~~G~g~Fdvr~~~~-~wiri~~e~GDli~vP~g~~HrF~~~~~~~i~aiRlF~~~ 152 (157)
T PF03079_consen 84 FFEEHTHED--EEVRYIVDGSGYFDVRDGDD-VWIRILCEKGDLIVVPAGTYHRFTLGESPYIKAIRLFKDE 152 (157)
T ss_dssp HCS-EEESS---EEEEEEECEEEEEEE-TTC-EEEEEEEETTCEEEE-TT--EEEEESTTSSEEEEEEESSC
T ss_pred hheeEecCh--heEEEEeCcEEEEEEEcCCC-EEEEEEEcCCCEEecCCCCceeEEcCCCCcEEEEEeecCC
Confidence 567899975 79999999999999998775 434568999999999999999997664 468888888543
No 60
>PRK10371 DNA-binding transcriptional regulator MelR; Provisional
Probab=97.80 E-value=8.2e-05 Score=71.18 Aligned_cols=66 Identities=11% Similarity=-0.035 Sum_probs=55.7
Q ss_pred CceEEEEEEecCCCcccCeeeCCCEEEEEEeCeEEEEEEcCCCceEEEEEcCCCEEEeCCCcEEEEEecCC
Q 018395 35 GNIGAAKLALEKNGFALPHYCDSARVAYVLQGSGVAGIVLPEKEEKVVAIKKGDGIALPFGVVTWWYNKED 105 (356)
Q Consensus 35 ~~~~~~~~~l~Pg~~~~pH~h~a~e~~yVl~G~~~~~vv~~~~~~~~~~l~~GDv~~iP~G~~H~~~N~g~ 105 (356)
...++..-.-.|..+..+|||+.-|+.|+++|++.+.+ ++ +.+.+++||++++++|.+|.+...++
T Consensus 24 ~~~~~~~~~~~~~~m~~~HwH~e~Ei~yv~~G~~~~~i---~g--~~~~l~~Gd~ili~s~~~H~~~~~~~ 89 (302)
T PRK10371 24 EYQRLEIEFRPPHIMPTSHWHGQVEVNVPFDGDVEYLI---NN--EKVQINQGHITLFWACTPHQLTDPGN 89 (302)
T ss_pred CCceeEEEeeCCCCCCCCCccccEEEEEecCCcEEEEE---CC--EEEEEcCCcEEEEecCCcccccccCC
Confidence 45667778888899999999999999999999998876 33 45899999999999999998765443
No 61
>PRK15457 ethanolamine utilization protein EutQ; Provisional
Probab=97.77 E-value=0.00021 Score=64.76 Aligned_cols=70 Identities=11% Similarity=0.329 Sum_probs=53.4
Q ss_pred CceeEEEEecCCCeecccccccCCeeEEEEEeceEEEEEEccCCceEEEEEecCCcEEEEcCCcEEEEeeCCCCeEEEEE
Q 018395 222 GCGADLVRLDGKAMCSPGFSCDSALQVTYIVRGSGRAQIVGPDGKRVLETTVKAGNLFIVPRFYVVSKIADPDGLAWFSI 301 (356)
Q Consensus 222 ~~s~~~v~l~~g~~~~PH~h~~~A~ei~~v~~G~~~~~iv~~~g~~~~~~~l~~Gdv~vvP~g~~h~~~~~~~~~~~~~~ 301 (356)
.||+....++...+ +||.+ -.|+.||++|+.++.+ +|+. ..+++||+++||+|..|.. ...+.+.++.+
T Consensus 156 ~m~aGf~~~~~~sf---~wtl~-~dEi~YVLEGe~~l~I---dG~t---~~l~pGDvlfIPkGs~~hf-~tp~~aRflyV 224 (233)
T PRK15457 156 SMAAGFMQWENAFF---PWTLN-YDEIDMVLEGELHVRH---EGET---MIAKAGDVMFIPKGSSIEF-GTPSSVRFLYV 224 (233)
T ss_pred ceeeEEEEEecCcc---ceecc-ceEEEEEEEeEEEEEE---CCEE---EEeCCCcEEEECCCCeEEe-cCCCCeeEEEE
Confidence 47788888887554 48888 9999999999999998 3433 5799999999999999443 22236666655
Q ss_pred E
Q 018395 302 I 302 (356)
Q Consensus 302 ~ 302 (356)
.
T Consensus 225 ~ 225 (233)
T PRK15457 225 A 225 (233)
T ss_pred E
Confidence 4
No 62
>PF05899 Cupin_3: Protein of unknown function (DUF861); InterPro: IPR008579 The function of the proteins in this entry are unknown. They contain the conserved barrel domain of the 'cupin' superfamily and members are specific to plants and bacteria.; PDB: 1RC6_A 3MYX_A 1O5U_A 2K9Z_A 1LKN_A 3ES4_A 1SFN_B 3BCW_A.
Probab=97.69 E-value=0.00026 Score=53.23 Aligned_cols=60 Identities=25% Similarity=0.322 Sum_probs=45.1
Q ss_pred ceEEEEEEecCCCcccCeeeCCCEEEEEEeCeEEEEEEcCCCceEEEEEcCCCEEEeCCCcEEEEE
Q 018395 36 NIGAAKLALEKNGFALPHYCDSARVAYVLQGSGVAGIVLPEKEEKVVAIKKGDGIALPFGVVTWWY 101 (356)
Q Consensus 36 ~~~~~~~~l~Pg~~~~pH~h~a~e~~yVl~G~~~~~vv~~~~~~~~~~l~~GDv~~iP~G~~H~~~ 101 (356)
.+++....-+||.+. .+| ..+|++|||+|++++.. .++ ...++++||++++|+|+.-.+.
T Consensus 6 ~~~~g~w~~~pg~~~-~~~-~~~E~~~vleG~v~it~--~~G--~~~~~~aGD~~~~p~G~~~~w~ 65 (74)
T PF05899_consen 6 VFSAGVWECTPGKFP-WPY-PEDEFFYVLEGEVTITD--EDG--ETVTFKAGDAFFLPKGWTGTWE 65 (74)
T ss_dssp SEEEEEEEEECEEEE-EEE-SSEEEEEEEEEEEEEEE--TTT--EEEEEETTEEEEE-TTEEEEEE
T ss_pred CEEEEEEEECCceeE-eeC-CCCEEEEEEEeEEEEEE--CCC--CEEEEcCCcEEEECCCCEEEEE
Confidence 467788888997633 223 55999999999999974 344 3389999999999999876654
No 63
>PF06052 3-HAO: 3-hydroxyanthranilic acid dioxygenase; InterPro: IPR010329 Members of this protein family, from both bacteria and eukaryotes, are the enzyme 3-hydroxyanthranilate 3,4-dioxygenase (1.13.11.6 from EC). It is part of the kynurenine pathway for the degradation of tryptophan and the biosynthesis of nicotinic acid [].The prokaryotic homologue is involved in the 2-nitrobenzoate degradation pathway []. The enzyme acts on the tryptophan metabolite 3-hydroxyanthranilate and produces 2-amino-3-carboxymuconate semialdehyde, which can rearrange spontaneously to quinolinic acid and feed into nicotinamide biosynthesis, or undergo further enzymatic degradation.; GO: 0000334 3-hydroxyanthranilate 3,4-dioxygenase activity, 0005506 iron ion binding, 0008152 metabolic process, 0055114 oxidation-reduction process; PDB: 1ZVF_A 1YFX_A 1YFW_A 1YFY_A 1YFU_A 2QNK_A 3FE5_A.
Probab=97.66 E-value=0.00043 Score=58.42 Aligned_cols=67 Identities=21% Similarity=0.153 Sum_probs=48.3
Q ss_pred EEEEEecCCCcccCeeeCCCEEEEEEeCeEEEEEEcCCCceEEEEEcCCCEEEeCCCcEEEEEecCCC
Q 018395 39 AAKLALEKNGFALPHYCDSARVAYVLQGSGVAGIVLPEKEEKVVAIKKGDGIALPFGVVTWWYNKEDT 106 (356)
Q Consensus 39 ~~~~~l~Pg~~~~pH~h~a~e~~yVl~G~~~~~vv~~~~~~~~~~l~~GDv~~iP~G~~H~~~N~g~e 106 (356)
...+.=.|+...--|+..++|++|-++|...+.+++. ++.++..+++||++++|++++|.-+-..++
T Consensus 35 ~VmvVGGPN~R~DyHine~eE~FyQ~kG~m~Lkv~e~-g~~kdi~I~EGe~fLLP~~vpHsP~R~~~t 101 (151)
T PF06052_consen 35 IVMVVGGPNQRTDYHINETEEFFYQLKGDMCLKVVED-GKFKDIPIREGEMFLLPANVPHSPQRPADT 101 (151)
T ss_dssp EEEEEESSB--SSEEE-SS-EEEEEEES-EEEEEEET-TEEEEEEE-TTEEEEE-TT--EEEEE-TT-
T ss_pred EEEEEcCCCCCCccccCCcceEEEEEeCcEEEEEEeC-CceEEEEeCCCcEEecCCCCCCCCcCCCCc
Confidence 3456778888888899899999999999999999885 456779999999999999999998876554
No 64
>PF06249 EutQ: Ethanolamine utilisation protein EutQ; InterPro: IPR010424 The eut operon of Salmonella typhimurium encodes proteins involved in the cobalamin-dependent degradation of ethanolamine. The role of EutQ in this process is unclear [].; PDB: 2PYT_B 3LWC_A.
Probab=97.66 E-value=0.00029 Score=60.15 Aligned_cols=73 Identities=22% Similarity=0.296 Sum_probs=52.9
Q ss_pred CceEEEEEEecCCCcccCeee-CCCEEEEEEeCeEEEEEEcCCCceEEEEEcCCCEEEeCCCcEEEEEecCCCcEEEEEE
Q 018395 35 GNIGAAKLALEKNGFALPHYC-DSARVAYVLQGSGVAGIVLPEKEEKVVAIKKGDGIALPFGVVTWWYNKEDTELVVLFL 113 (356)
Q Consensus 35 ~~~~~~~~~l~Pg~~~~pH~h-~a~e~~yVl~G~~~~~vv~~~~~~~~~~l~~GDv~~iP~G~~H~~~N~g~e~l~~l~i 113 (356)
..|+++.++|+.. ..-|. ..+|+-||++|+..+.+ +| +++..++||+++||+|..-.+.-. ...+++++
T Consensus 75 ~~l~~Gf~~le~~---~f~wtl~YDEi~~VlEG~L~i~~---~G--~~~~A~~GDvi~iPkGs~I~fst~--~~a~~~Yv 144 (152)
T PF06249_consen 75 PRLSAGFMELEKT---SFPWTLTYDEIKYVLEGTLEISI---DG--QTVTAKPGDVIFIPKGSTITFSTP--DYARFFYV 144 (152)
T ss_dssp -SSEEEEEEEEEE---EEEEE-SSEEEEEEEEEEEEEEE---TT--EEEEEETT-EEEE-TT-EEEEEEE--EEEEEEEE
T ss_pred CceeeEEEEEeCC---CccEEeecceEEEEEEeEEEEEE---CC--EEEEEcCCcEEEECCCCEEEEecC--CCEEEEEE
Confidence 4688899999974 45688 99999999999988874 33 348999999999999987666433 24677776
Q ss_pred eeCC
Q 018395 114 GDTS 117 (356)
Q Consensus 114 ~~~~ 117 (356)
..++
T Consensus 145 ~yPa 148 (152)
T PF06249_consen 145 TYPA 148 (152)
T ss_dssp EEST
T ss_pred ECCC
Confidence 6543
No 65
>PF05523 FdtA: WxcM-like, C-terminal ; InterPro: IPR008894 This entry includes FdtA (Q6T1W8 from SWISSPROT) from Aneurinibacillus thermoaerophilus, which has been characterised as a dTDP-6-deoxy-3,4-keto-hexulose isomerase []. It also includes WxcM (Q93S92 from SWISSPROT) from Xanthomonas campestris pv campestris) []. ; PDB: 2PAK_A 2PAE_A 2PA7_B 2PAM_A.
Probab=97.65 E-value=0.00098 Score=55.89 Aligned_cols=96 Identities=5% Similarity=-0.070 Sum_probs=54.6
Q ss_pred CCCcEEEEeCCCCCCCccccCceeEEEE-ecCCCeecccccccCCeeEEEEEeceEEEEEEccCCceEEEEEecCC-cEE
Q 018395 202 KNGGRVVLLNTKNLPLVGEVGCGADLVR-LDGKAMCSPGFSCDSALQVTYIVRGSGRAQIVGPDGKRVLETTVKAG-NLF 279 (356)
Q Consensus 202 ~~gG~~~~~~~~~~p~l~~l~~s~~~v~-l~~g~~~~PH~h~~~A~ei~~v~~G~~~~~iv~~~g~~~~~~~l~~G-dv~ 279 (356)
...|.+..+...+-....- -.+..+. ..+|..+..|+|.. .+++++|++|+.++.+-+..+.+.| .|..- +.+
T Consensus 13 D~RG~L~~~e~~~~ipf~i--~rvy~i~~~~~~~~RG~H~Hk~-~~~~~~~l~Gs~~v~~~d~~~~~~~--~L~~~~~~L 87 (131)
T PF05523_consen 13 DERGSLSVIERFDDIPFEI--KRVYYIYNVPPGVIRGWHAHKK-TTQWFIVLSGSFKVVLDDGREEEEF--ILDEPNKGL 87 (131)
T ss_dssp ETTEEEEEEETTTSSSS-----EEEEEES--SS--EEEEEESS---EEEEEEES-EEEEEE-SS-EEEE--EE--TTEEE
T ss_pred CCCCcEEEEeccCCCCCCc--cEEEEEEcCCCCCccccccccc-ccEEEEEEeCEEEEEEecCCCcEEE--EECCCCeEE
Confidence 3477888777664322221 1244443 34455599999998 9999999999999998886655433 45444 589
Q ss_pred EEcCCcEEEEeeCCCCeEEEEEE
Q 018395 280 IVPRFYVVSKIADPDGLAWFSII 302 (356)
Q Consensus 280 vvP~g~~h~~~~~~~~~~~~~~~ 302 (356)
.||+|++|.+.+-++++.++.+.
T Consensus 88 ~Ippg~w~~~~~~s~~svlLv~a 110 (131)
T PF05523_consen 88 YIPPGVWHGIKNFSEDSVLLVLA 110 (131)
T ss_dssp EE-TT-EEEEE---TT-EEEEEE
T ss_pred EECCchhhHhhccCCCcEEEEEc
Confidence 99999999997655556666644
No 66
>PF11699 CENP-C_C: Mif2/CENP-C like; PDB: 2VPV_B.
Probab=97.59 E-value=0.00049 Score=53.16 Aligned_cols=71 Identities=23% Similarity=0.219 Sum_probs=50.9
Q ss_pred CceeEEEEecCCCeecccccccCCeeEEEEEeceEEEEEEccCCceEEEEEecCCcEEEEcCCcEEEE-eeCCCCeEEE
Q 018395 222 GCGADLVRLDGKAMCSPGFSCDSALQVTYIVRGSGRAQIVGPDGKRVLETTVKAGNLFIVPRFYVVSK-IADPDGLAWF 299 (356)
Q Consensus 222 ~~s~~~v~l~~g~~~~PH~h~~~A~ei~~v~~G~~~~~iv~~~g~~~~~~~l~~Gdv~vvP~g~~h~~-~~~~~~~~~~ 299 (356)
.++...+.|.||+.-.|-.--+ .+-+.||++|.+++++-. + ...+.+|++|.||+|--..+ |.+++.+.++
T Consensus 11 ~fa~G~l~Lpp~~~K~~k~s~~-~~~vF~V~~G~v~Vti~~---~---~f~v~~G~~F~VP~gN~Y~i~N~~~~~a~Lf 82 (85)
T PF11699_consen 11 FFASGMLELPPGGEKPPKNSRD-NTMVFYVIKGKVEVTIHE---T---SFVVTKGGSFQVPRGNYYSIKNIGNEEAKLF 82 (85)
T ss_dssp S-EEEEEEE-TCCCEEEEE--S-EEEEEEEEESEEEEEETT---E---EEEEETT-EEEE-TT-EEEEEE-SSS-EEEE
T ss_pred CceeEEEEeCCCCccCCcccCC-cEEEEEEEeCEEEEEEcC---c---EEEEeCCCEEEECCCCEEEEEECCCCcEEEE
Confidence 3778899999999987766555 889999999999999854 2 24699999999999999999 4476666654
No 67
>PRK13501 transcriptional activator RhaR; Provisional
Probab=97.56 E-value=0.00026 Score=67.02 Aligned_cols=56 Identities=14% Similarity=0.128 Sum_probs=46.8
Q ss_pred cCCCcccCeeeCCCEEEEEEeCeEEEEEEcCCCceEEEEEcCCCEEEeCCCcEEEEEecCC
Q 018395 45 EKNGFALPHYCDSARVAYVLQGSGVAGIVLPEKEEKVVAIKKGDGIALPFGVVTWWYNKED 105 (356)
Q Consensus 45 ~Pg~~~~pH~h~a~e~~yVl~G~~~~~vv~~~~~~~~~~l~~GDv~~iP~G~~H~~~N~g~ 105 (356)
.+..-..+|||+.-|+.||++|++++.+ ++ ..+.+++||+++||+|..|.+...++
T Consensus 26 ~~~~~~~~H~H~~~ei~~i~~G~~~~~i---~~--~~~~l~~g~~~~I~p~~~H~~~~~~~ 81 (290)
T PRK13501 26 YPQETFVEHTHQFCEIVIVWRGNGLHVL---ND--HPYRITCGDVFYIQAADHHSYESVHD 81 (290)
T ss_pred CCCCCCccccccceeEEEEecCceEEEE---CC--eeeeecCCeEEEEcCCCcccccccCC
Confidence 4444567999999999999999999987 33 45899999999999999999876543
No 68
>PRK13500 transcriptional activator RhaR; Provisional
Probab=97.56 E-value=0.00032 Score=67.35 Aligned_cols=61 Identities=16% Similarity=0.151 Sum_probs=49.3
Q ss_pred EEEEecCCCcccCeeeCCCEEEEEEeCeEEEEEEcCCCceEEEEEcCCCEEEeCCCcEEEEEecCC
Q 018395 40 AKLALEKNGFALPHYCDSARVAYVLQGSGVAGIVLPEKEEKVVAIKKGDGIALPFGVVTWWYNKED 105 (356)
Q Consensus 40 ~~~~l~Pg~~~~pH~h~a~e~~yVl~G~~~~~vv~~~~~~~~~~l~~GDv~~iP~G~~H~~~N~g~ 105 (356)
..-.--|.....+|||+.-|++||++|++...+ ++ ..+.+++||+++||+|..|.+....+
T Consensus 51 ~v~~~~~~~~~~~H~H~~~el~~v~~G~g~~~v---~~--~~~~l~~Gdl~~I~~~~~H~~~~~~~ 111 (312)
T PRK13500 51 AVADRYPQDVFAEHTHDFCELVIVWRGNGLHVL---ND--RPYRITRGDLFYIHADDKHSYASVND 111 (312)
T ss_pred EEecCCCCCCCCccccceEEEEEEEcCeEEEEE---CC--EEEeecCCeEEEECCCCeecccccCC
Confidence 333344555678999999999999999999876 33 44899999999999999999876544
No 69
>PF02041 Auxin_BP: Auxin binding protein; InterPro: IPR000526 Auxin binding protein is located in the lumen of the endoplasmic reticulum (ER). The primary structure contains an N-terminal hydrophobic leader sequence of 30-40 amino acids, which could represent a signal for translocation of the protein to the ER [, ]. The mature protein comprises around 165 residues, and contains a number of potential N-glycosylation sites. In vitro transport studies have demonstrated co-translational glycosylation []. Retention within the lumen of the ER correlates with an additional signal located at the C terminus, represented by the sequence Lys-Asp-Glu-Leu, known to be responsible for preventing secretion of proteins from the lumen of the ER in eukaryotic cells [, ].; GO: 0004872 receptor activity, 0005788 endoplasmic reticulum lumen; PDB: 1LR5_D 1LRH_D.
Probab=97.55 E-value=0.00098 Score=56.11 Aligned_cols=121 Identities=17% Similarity=0.152 Sum_probs=66.4
Q ss_pred CceeeccCCCCCcccCCC-cEEEEeCCCCCCCccccCceeEEEEecCCCeecccccccCCeeEEEEEeceEEEEEEccCC
Q 018395 187 GMAFNCEEAPLDVDIKNG-GRVVLLNTKNLPLVGEVGCGADLVRLDGKAMCSPGFSCDSALQVTYIVRGSGRAQIVGPDG 265 (356)
Q Consensus 187 ~~~~~l~~~~~~~~~~~g-G~~~~~~~~~~p~l~~l~~s~~~v~l~~g~~~~PH~h~~~A~ei~~v~~G~~~~~iv~~~g 265 (356)
+.+.|+.+.+-+-+...| -.++.+. .-+..++. +.+-+-.+.||.-.++|=|. -.|+.+|++|+|...+...++
T Consensus 10 ~~Vr~iselpq~~ygr~GLsH~TvAG-a~~hGmke--vEVwlQTfAPG~~TPiHRHs--CEEVFvVLkG~GTl~l~~~~~ 84 (167)
T PF02041_consen 10 PLVRNISELPQDNYGRPGLSHITVAG-ALLHGMKE--VEVWLQTFAPGSATPIHRHS--CEEVFVVLKGSGTLYLASSHE 84 (167)
T ss_dssp -SEEEGGGS--B-TT-TTEEEEEEE--HHHH--SS--EEEEEEEE-TT-B--EEEES--S-EEEEEEE--EEEEE--SSS
T ss_pred ceeEEhhhCccccccCCCcceEEeeh-hhhcCcee--eeEEeeeecCCCCCCCcccc--ccEEEEEEecceEEEEecccc
Confidence 456677755544332223 2344443 22455665 56888899999999999997 479999999999999997753
Q ss_pred c---eEEEEEecCCcEEEEcCCcEEEEeeCC--CCeEEEEEEcCCCCceeccc
Q 018395 266 K---RVLETTVKAGNLFIVPRFYVVSKIADP--DGLAWFSIITTPNPIFTHLA 313 (356)
Q Consensus 266 ~---~~~~~~l~~Gdv~vvP~g~~h~~~~~~--~~~~~~~~~~~~~p~~~~la 313 (356)
+ +--...+.+++.|.||.+-+|-+.|++ |++.++.+. |.-|...|+.
T Consensus 85 ~~pG~pqef~~~pnSTf~IPvn~~HQv~NT~e~eDlqvlVii-SrpPvkvf~y 136 (167)
T PF02041_consen 85 KYPGKPQEFPIFPNSTFHIPVNDAHQVWNTNEHEDLQVLVII-SRPPVKVFIY 136 (167)
T ss_dssp SS--S-EEEEE-TTEEEEE-TT--EEEE---SSS-EEEEEEE-ESSS--EEEE
T ss_pred cCCCCceEEEecCCCeEEeCCCCcceeecCCCCcceEEEEEe-cCCCeEEEEe
Confidence 1 223457999999999999999995543 688888877 4456666665
No 70
>PF02311 AraC_binding: AraC-like ligand binding domain; InterPro: IPR003313 This entry defines the arabinose-binding and dimerisation domain of the bacterial gene regulatory protein AraC. The crystal structure of the arabinose-binding and dimerization domain of the Escherichia coli gene regulatory protein AraC was determined in the presence and absence of L-arabinose. The arabinose-bound molecule shows that the protein adopts an unusual fold, binding sugar within a beta barrel and completely burying the arabinose with the amino-terminal arm of the protein. Dimer contacts in the presence of arabinose are mediated by an antiparallel coiled-coil. In the uncomplexed protein, the amino-terminal arm is disordered, uncovering the sugar-binding pocket and allowing it to serve as an oligomerization interface [].; GO: 0006355 regulation of transcription, DNA-dependent; PDB: 1XJA_B 2ARA_A 2AAC_B 2ARC_A.
Probab=97.55 E-value=0.00029 Score=57.69 Aligned_cols=63 Identities=24% Similarity=0.429 Sum_probs=42.1
Q ss_pred CCCeecccccccCCeeEEEEEeceEEEEEEccCCceEEEEEecCCcEEEEcCCcEEEEeeCC-CCeEEEEEE
Q 018395 232 GKAMCSPGFSCDSALQVTYIVRGSGRAQIVGPDGKRVLETTVKAGNLFIVPRFYVVSKIADP-DGLAWFSII 302 (356)
Q Consensus 232 ~g~~~~PH~h~~~A~ei~~v~~G~~~~~iv~~~g~~~~~~~l~~Gdv~vvP~g~~h~~~~~~-~~~~~~~~~ 302 (356)
++-...||||. -.++.||++|++.+.+=+ + ...+++||++++|+|.+|...... +++++..+.
T Consensus 12 ~~~~~~~h~h~--~~~i~~v~~G~~~~~~~~----~--~~~l~~g~~~li~p~~~H~~~~~~~~~~~~~~i~ 75 (136)
T PF02311_consen 12 PNFEFPPHWHD--FYEIIYVLSGEGTLHIDG----Q--EYPLKPGDLFLIPPGQPHSYYPDSNEPWEYYWIY 75 (136)
T ss_dssp TT-SEEEETT---SEEEEEEEEE-EEEEETT----E--EEEE-TT-EEEE-TTS-EEEEE-TTSEEEEEEEE
T ss_pred CCCccCCEECC--CEEEEEEeCCEEEEEECC----E--EEEEECCEEEEecCCccEEEecCCCCCEEEEEEE
Confidence 45567899997 479999999999985432 2 257999999999999999986644 366655553
No 71
>PF12973 Cupin_7: ChrR Cupin-like domain; PDB: 3O14_B 2Z2S_F 2Q1Z_B 3EBR_A.
Probab=97.54 E-value=0.00061 Score=53.23 Aligned_cols=65 Identities=18% Similarity=0.172 Sum_probs=50.0
Q ss_pred CceeEEEEecCCCeecccccccCCeeEEEEEeceEEEEEEccCCceEEEEEecCCcEEEEcCCcEEEEeeCCCCeEEE
Q 018395 222 GCGADLVRLDGKAMCSPGFSCDSALQVTYIVRGSGRAQIVGPDGKRVLETTVKAGNLFIVPRFYVVSKIADPDGLAWF 299 (356)
Q Consensus 222 ~~s~~~v~l~~g~~~~PH~h~~~A~ei~~v~~G~~~~~iv~~~g~~~~~~~l~~Gdv~vvP~g~~h~~~~~~~~~~~~ 299 (356)
+..+..+++.||+..+.|.|+ +.|.+||++|+.. +.++ +..+||.++.|.|..|...+ .+++.++
T Consensus 23 g~~~~L~r~~pG~~~p~H~H~--g~ee~~VLeG~~~----d~~~------~~~~G~~~~~p~g~~h~~~s-~~gc~~~ 87 (91)
T PF12973_consen 23 GERVSLLRLEPGASLPRHRHP--GGEEILVLEGELS----DGDG------RYGAGDWLRLPPGSSHTPRS-DEGCLIL 87 (91)
T ss_dssp TEEEEEEEE-TTEEEEEEEES--S-EEEEEEECEEE----ETTC------EEETTEEEEE-TTEEEEEEE-SSCEEEE
T ss_pred cCEEEEEEECCCCCcCccCCC--CcEEEEEEEEEEE----ECCc------cCCCCeEEEeCCCCccccCc-CCCEEEE
Confidence 467899999999999999997 4688899999985 3332 36899999999999999875 5555443
No 72
>PF06339 Ectoine_synth: Ectoine synthase; InterPro: IPR010462 This family consists of several bacterial ectoine synthase proteins. The ectABC genes encode the diaminobutyric acid acetyltransferase (EctA), the diaminobutyric acid aminotransferase (EctB), and the ectoine synthase (EctC). Together these proteins constitute the ectoine biosynthetic pathway [].; GO: 0016836 hydro-lyase activity, 0006596 polyamine biosynthetic process
Probab=97.51 E-value=0.0013 Score=53.94 Aligned_cols=80 Identities=13% Similarity=0.264 Sum_probs=69.0
Q ss_pred cccCceeEEEEecCCCeecccccccCCeeEEEEEeceEEEEEEccCCceEEEEEecCCcEEEEcCCcEEEEeeCCCCeEE
Q 018395 219 GEVGCGADLVRLDGKAMCSPGFSCDSALQVTYIVRGSGRAQIVGPDGKRVLETTVKAGNLFIVPRFYVVSKIADPDGLAW 298 (356)
Q Consensus 219 ~~l~~s~~~v~l~~g~~~~PH~h~~~A~ei~~v~~G~~~~~iv~~~g~~~~~~~l~~Gdv~vvP~g~~h~~~~~~~~~~~ 298 (356)
.++|.|+-...+.+|.-...|| .| =-|-+||++|+|+++-+.. |+. ..++||.+...-+.=.|++.+.. ++..
T Consensus 31 DgmGFS~h~T~i~aGtet~~~Y-kn-HlEAvyci~G~Gev~~~~~-G~~---~~i~pGt~YaLd~hD~H~lra~~-dm~~ 103 (126)
T PF06339_consen 31 DGMGFSFHETTIYAGTETHIHY-KN-HLEAVYCIEGEGEVEDLDT-GEV---HPIKPGTMYALDKHDRHYLRAKT-DMRL 103 (126)
T ss_pred CCCCEEEEEEEEeCCCeeEEEe-cC-ceEEEEEEeceEEEEEccC-CcE---EEcCCCeEEecCCCccEEEEecC-CEEE
Confidence 4578999999999999998898 35 6799999999999999874 433 58999999999999999998877 9999
Q ss_pred EEEEcCC
Q 018395 299 FSIITTP 305 (356)
Q Consensus 299 ~~~~~~~ 305 (356)
+|+|+..
T Consensus 104 vCVFnPp 110 (126)
T PF06339_consen 104 VCVFNPP 110 (126)
T ss_pred EEEcCCC
Confidence 9999655
No 73
>PRK10296 DNA-binding transcriptional regulator ChbR; Provisional
Probab=97.49 E-value=0.00065 Score=63.83 Aligned_cols=52 Identities=23% Similarity=0.281 Sum_probs=44.2
Q ss_pred CCcccCeeeCCCEEEEEEeCeEEEEEEcCCCceEEEEEcCCCEEEeCCCcEEEEEec
Q 018395 47 NGFALPHYCDSARVAYVLQGSGVAGIVLPEKEEKVVAIKKGDGIALPFGVVTWWYNK 103 (356)
Q Consensus 47 g~~~~pH~h~a~e~~yVl~G~~~~~vv~~~~~~~~~~l~~GDv~~iP~G~~H~~~N~ 103 (356)
+....+|||+.-|+.||++|++.+.+ ++ +.+.+++||++.+|+|..|.....
T Consensus 33 ~~~~~~H~H~~~ei~~v~~G~~~~~i---~~--~~~~l~~g~l~~i~p~~~H~~~~~ 84 (278)
T PRK10296 33 ESVSGLHQHDYYEFTLVLTGRYYQEI---NG--KRVLLERGDFVFIPLGSHHQSFYE 84 (278)
T ss_pred hcCCCCcccccEEEEEEEeceEEEEE---CC--EEEEECCCcEEEeCCCCccceeee
Confidence 44568999999999999999999886 33 348999999999999999976554
No 74
>TIGR02272 gentisate_1_2 gentisate 1,2-dioxygenase. This family consists of gentisate 1,2-dioxygenases. This ring-opening enzyme acts in salicylate degradation that goes via gentisate rather than via catechol. It converts gentisate to maleylpyruvate. Some putative gentisate 1,2-dioxygenases are excluded by a relatively high trusted cutoff score because they are too closely related to known examples of 1-hydroxy-2-naphthoate dioxygenase. Therefore some homologs may be bona fide gentisate 1,2-dioxygenases even if they score below the given cutoffs.
Probab=97.44 E-value=0.00052 Score=66.22 Aligned_cols=69 Identities=22% Similarity=0.160 Sum_probs=56.0
Q ss_pred eEEEEEEecCCCcccCeeeCCCEEEEEEeCeEEEEEEcCCCceEEEEEcCCCEEEeCCCcEEEEEecCCCcEEEEE
Q 018395 37 IGAAKLALEKNGFALPHYCDSARVAYVLQGSGVAGIVLPEKEEKVVAIKKGDGIALPFGVVTWWYNKEDTELVVLF 112 (356)
Q Consensus 37 ~~~~~~~l~Pg~~~~pH~h~a~e~~yVl~G~~~~~vv~~~~~~~~~~l~~GDv~~iP~G~~H~~~N~g~e~l~~l~ 112 (356)
++.....|.||....+|-|.+..++||++|+|+..+ ++ ...+.++||+|++|+-..|...|. +++.++.
T Consensus 250 i~~~~q~L~~G~~t~~~r~T~s~Vf~VieG~G~s~i---g~--~~~~W~~gD~f~vPsW~~~~h~a~--~da~Lf~ 318 (335)
T TIGR02272 250 IGAFIQLLPKGFRTATYRSTDATVFCVVEGRGQVRI---GD--AVFRFSPKDVFVVPSWHPVRFEAS--DDAVLFS 318 (335)
T ss_pred HHHHHhccCCCCCCCCccccccEEEEEEeCeEEEEE---CC--EEEEecCCCEEEECCCCcEecccC--CCeEEEE
Confidence 444457889999999999999999999999999987 23 358999999999999988887775 3444443
No 75
>PRK13502 transcriptional activator RhaR; Provisional
Probab=97.43 E-value=0.00054 Score=64.44 Aligned_cols=61 Identities=13% Similarity=0.135 Sum_probs=49.3
Q ss_pred EEEEecCCCcccCeeeCCCEEEEEEeCeEEEEEEcCCCceEEEEEcCCCEEEeCCCcEEEEEecCC
Q 018395 40 AKLALEKNGFALPHYCDSARVAYVLQGSGVAGIVLPEKEEKVVAIKKGDGIALPFGVVTWWYNKED 105 (356)
Q Consensus 40 ~~~~l~Pg~~~~pH~h~a~e~~yVl~G~~~~~vv~~~~~~~~~~l~~GDv~~iP~G~~H~~~N~g~ 105 (356)
..-...|+-...+|||+.-|+.||++|++.+.+ ++ ..+.+++||++++|+|.+|.+...++
T Consensus 21 ~~~~~~~~~~~~~H~h~~~~l~~v~~G~~~~~i---~~--~~~~l~~g~l~li~~~~~H~~~~~~~ 81 (282)
T PRK13502 21 TVADRYPQDVFAEHTHEFCELVMVWRGNGLHVL---NE--RPYRITRGDLFYIRAEDKHSYTSVND 81 (282)
T ss_pred EEecCCCCCCCCccccceEEEEEEecCcEEEEE---CC--EEEeecCCcEEEECCCCcccccccCC
Confidence 334445555578999999999999999999986 23 45899999999999999999865443
No 76
>COG1791 Uncharacterized conserved protein, contains double-stranded beta-helix domain [Function unknown]
Probab=97.35 E-value=0.0015 Score=56.16 Aligned_cols=69 Identities=23% Similarity=0.328 Sum_probs=56.9
Q ss_pred eecccccccCCeeEEEEEeceEEEEEEccCCceEEEEEecCCcEEEEcCCcEEEEeeC-CCCeEEEEEEcCCC
Q 018395 235 MCSPGFSCDSALQVTYIVRGSGRAQIVGPDGKRVLETTVKAGNLFIVPRFYVVSKIAD-PDGLAWFSIITTPN 306 (356)
Q Consensus 235 ~~~PH~h~~~A~ei~~v~~G~~~~~iv~~~g~~~~~~~l~~Gdv~vvP~g~~h~~~~~-~~~~~~~~~~~~~~ 306 (356)
+..=|.|. ..|+-|++.|+|...+.+++|. ++.-.+.+||.+.+|.|.=||.--+ +..++.+-+|+...
T Consensus 87 F~~EH~H~--d~EvRy~vaG~GiF~v~~~d~~-~~~i~c~~gDLI~vP~gi~HwFtlt~~~~f~AvRlF~~~~ 156 (181)
T COG1791 87 FLQEHLHT--DDEVRYFVAGEGIFDVHSPDGK-VYQIRCEKGDLISVPPGIYHWFTLTESPNFKAVRLFTEPE 156 (181)
T ss_pred HHHHhccC--CceEEEEEecceEEEEECCCCc-EEEEEEccCCEEecCCCceEEEEccCCCcEEEEEEeeCCC
Confidence 34569996 6899999999999999999974 4666889999999999999998554 55688888775544
No 77
>PF05899 Cupin_3: Protein of unknown function (DUF861); InterPro: IPR008579 The function of the proteins in this entry are unknown. They contain the conserved barrel domain of the 'cupin' superfamily and members are specific to plants and bacteria.; PDB: 1RC6_A 3MYX_A 1O5U_A 2K9Z_A 1LKN_A 3ES4_A 1SFN_B 3BCW_A.
Probab=97.34 E-value=0.00058 Score=51.35 Aligned_cols=58 Identities=19% Similarity=0.264 Sum_probs=41.8
Q ss_pred ceeEEEEecCCCeecccccccCCeeEEEEEeceEEEEEEccCCceEEEEEecCCcEEEEcCCcEEEE
Q 018395 223 CGADLVRLDGKAMCSPGFSCDSALQVTYIVRGSGRAQIVGPDGKRVLETTVKAGNLFIVPRFYVVSK 289 (356)
Q Consensus 223 ~s~~~v~l~~g~~~~PH~h~~~A~ei~~v~~G~~~~~iv~~~g~~~~~~~l~~Gdv~vvP~g~~h~~ 289 (356)
+++..-.-+||.+. |+.. .+|+.||++|++.++.- +|.+ .++++||++++|+|+....
T Consensus 7 ~~~g~w~~~pg~~~---~~~~-~~E~~~vleG~v~it~~--~G~~---~~~~aGD~~~~p~G~~~~w 64 (74)
T PF05899_consen 7 FSAGVWECTPGKFP---WPYP-EDEFFYVLEGEVTITDE--DGET---VTFKAGDAFFLPKGWTGTW 64 (74)
T ss_dssp EEEEEEEEECEEEE---EEES-SEEEEEEEEEEEEEEET--TTEE---EEEETTEEEEE-TTEEEEE
T ss_pred EEEEEEEECCceeE---eeCC-CCEEEEEEEeEEEEEEC--CCCE---EEEcCCcEEEECCCCEEEE
Confidence 34555567787643 3344 68999999999888744 5544 5799999999999986554
No 78
>TIGR02297 HpaA 4-hydroxyphenylacetate catabolism regulatory protein HpaA. This putative transcriptional regulator, which contains both the substrate-binding, dimerization domain (pfam02311) and the helix-turn-helix DNA-binding domain (pfam00165) of the AraC famil, is located proximal to genes of the 4-hydroxyphenylacetate catabolism pathway.
Probab=97.29 E-value=0.00066 Score=63.94 Aligned_cols=61 Identities=16% Similarity=0.074 Sum_probs=48.3
Q ss_pred CCCcccCeeeC-CCEEEEEEeCeEEEEEEcCCCceEEEEEcCCCEEEeCCCcEEEEEecCCCcEEEE
Q 018395 46 KNGFALPHYCD-SARVAYVLQGSGVAGIVLPEKEEKVVAIKKGDGIALPFGVVTWWYNKEDTELVVL 111 (356)
Q Consensus 46 Pg~~~~pH~h~-a~e~~yVl~G~~~~~vv~~~~~~~~~~l~~GDv~~iP~G~~H~~~N~g~e~l~~l 111 (356)
-+....+|||+ .-+++||++|++.+.+ ++ ..+.+++||++++|+|..|.+....+....++
T Consensus 32 ~~~~~~~H~H~~~~~l~~~~~G~~~~~~---~~--~~~~l~~g~~~ii~~~~~H~~~~~~~~~~~~i 93 (287)
T TIGR02297 32 FGRNMPVHFHDRYYQLHYLTEGSIALQL---DE--HEYSEYAPCFFLTPPSVPHGFVTDLDADGHVL 93 (287)
T ss_pred cCCCCCCcccccceeEEEEeeCceEEEE---CC--EEEEecCCeEEEeCCCCccccccCCCcceEEE
Confidence 34568999996 7999999999998876 33 35899999999999999999876544433333
No 79
>COG4766 EutQ Ethanolamine utilization protein [Amino acid transport and metabolism]
Probab=97.28 E-value=0.002 Score=54.38 Aligned_cols=74 Identities=20% Similarity=0.334 Sum_probs=54.5
Q ss_pred CceEEEEEEecCCCcccCeeeCCCEEEEEEeCeEEEEEEcCCCceEEEEEcCCCEEEeCCCcEEEEEecCCCcEEEEEEe
Q 018395 35 GNIGAAKLALEKNGFALPHYCDSARVAYVLQGSGVAGIVLPEKEEKVVAIKKGDGIALPFGVVTWWYNKEDTELVVLFLG 114 (356)
Q Consensus 35 ~~~~~~~~~l~Pg~~~~pH~h~a~e~~yVl~G~~~~~vv~~~~~~~~~~l~~GDv~~iP~G~~H~~~N~g~e~l~~l~i~ 114 (356)
..++++.+++++ -..|..-+-+|+-|||+|+..+.+ +++ +..-++||++++|.|..--+--.|. ++++++.
T Consensus 98 ~~l~aG~m~~~~--~tf~wtl~yDe~d~VlEGrL~V~~---~g~--tv~a~aGDvifiPKgssIefst~ge--a~flyvt 168 (176)
T COG4766 98 SRLGAGLMEMKN--TTFPWTLNYDEIDYVLEGRLHVRI---DGR--TVIAGAGDVIFIPKGSSIEFSTTGE--AKFLYVT 168 (176)
T ss_pred Cccccceeeecc--ccCcceecccceeEEEeeeEEEEE---cCC--eEecCCCcEEEecCCCeEEEeccce--EEEEEEE
Confidence 457778888888 223333399999999999998875 232 3688999999999998766654443 7888776
Q ss_pred eCC
Q 018395 115 DTS 117 (356)
Q Consensus 115 ~~~ 117 (356)
.+.
T Consensus 169 yPa 171 (176)
T COG4766 169 YPA 171 (176)
T ss_pred ccc
Confidence 543
No 80
>KOG2107 consensus Uncharacterized conserved protein, contains double-stranded beta-helix domain [Function unknown]
Probab=97.20 E-value=0.00061 Score=58.15 Aligned_cols=58 Identities=22% Similarity=0.411 Sum_probs=49.2
Q ss_pred cccCeeeCCCEEEEEEeCeEEEEEEcCCCceEEEEEcCCCEEEeCCCcEEEEEecCCC
Q 018395 49 FALPHYCDSARVAYVLQGSGVAGIVLPEKEEKVVAIKKGDGIALPFGVVTWWYNKEDT 106 (356)
Q Consensus 49 ~~~pH~h~a~e~~yVl~G~~~~~vv~~~~~~~~~~l~~GDv~~iP~G~~H~~~N~g~e 106 (356)
+...|.|..+|+-||+.|+|..-|-+.++.....-++.||.+++|+|.-|...-+.+.
T Consensus 85 FfEEhlh~deeiR~il~GtgYfDVrd~dd~WIRi~vekGDlivlPaGiyHRFTtt~~n 142 (179)
T KOG2107|consen 85 FFEEHLHEDEEIRYILEGTGYFDVRDKDDQWIRIFVEKGDLIVLPAGIYHRFTTTPSN 142 (179)
T ss_pred HHHHhcCchhheEEEeecceEEeeccCCCCEEEEEEecCCEEEecCcceeeeecCchH
Confidence 4679999999999999999999987777665567899999999999999987655443
No 81
>PRK13503 transcriptional activator RhaS; Provisional
Probab=97.19 E-value=0.00064 Score=63.65 Aligned_cols=55 Identities=11% Similarity=0.054 Sum_probs=46.0
Q ss_pred cCCCcccCeeeCCCEEEEEEeCeEEEEEEcCCCceEEEEEcCCCEEEeCCCcEEEEEecC
Q 018395 45 EKNGFALPHYCDSARVAYVLQGSGVAGIVLPEKEEKVVAIKKGDGIALPFGVVTWWYNKE 104 (356)
Q Consensus 45 ~Pg~~~~pH~h~a~e~~yVl~G~~~~~vv~~~~~~~~~~l~~GDv~~iP~G~~H~~~N~g 104 (356)
.+.....+|||+.-|++||++|.+++.+ ++ ..+.+++||++++|+|..|.+.+..
T Consensus 23 ~~~~~~~~H~H~~~ei~~v~~G~~~~~i---~~--~~~~l~~g~~~~i~~~~~h~~~~~~ 77 (278)
T PRK13503 23 LPQAAFPEHHHDFHEIVIVEHGTGIHVF---NG--QPYTLSGGTVCFVRDHDRHLYEHTD 77 (278)
T ss_pred CccccccccccCceeEEEEecCceeeEe---cC--CcccccCCcEEEECCCccchhhhcc
Confidence 3445678999999999999999999986 22 3489999999999999999876653
No 82
>COG3450 Predicted enzyme of the cupin superfamily [General function prediction only]
Probab=97.14 E-value=0.0064 Score=49.62 Aligned_cols=61 Identities=18% Similarity=0.300 Sum_probs=47.5
Q ss_pred cCceEEEEEEecCCCcccCeee-CCCEEEEEEeCeEEEEEEcCCCceEEEEEcCCCEEEeCCCcEEEEE
Q 018395 34 QGNIGAAKLALEKNGFALPHYC-DSARVAYVLQGSGVAGIVLPEKEEKVVAIKKGDGIALPFGVVTWWY 101 (356)
Q Consensus 34 ~~~~~~~~~~l~Pg~~~~pH~h-~a~e~~yVl~G~~~~~vv~~~~~~~~~~l~~GDv~~iP~G~~H~~~ 101 (356)
+..+..+.-.-.||. .+++ ...|++|+|+|++++. . ++.+ ..++++||++++|+|+.=.|.
T Consensus 42 dg~~~~GiWe~TpG~---~r~~y~~~E~chil~G~v~~T--~-d~Ge-~v~~~aGD~~~~~~G~~g~W~ 103 (116)
T COG3450 42 DGQVETGIWECTPGK---FRVTYDEDEFCHILEGRVEVT--P-DGGE-PVEVRAGDSFVFPAGFKGTWE 103 (116)
T ss_pred CCCeeEeEEEecCcc---ceEEcccceEEEEEeeEEEEE--C-CCCe-EEEEcCCCEEEECCCCeEEEE
Confidence 345677788888886 4566 7799999999999885 3 3333 479999999999999876554
No 83
>PRK10296 DNA-binding transcriptional regulator ChbR; Provisional
Probab=96.98 E-value=0.0034 Score=58.96 Aligned_cols=50 Identities=16% Similarity=0.242 Sum_probs=40.8
Q ss_pred CCeecccccccCCeeEEEEEeceEEEEEEccCCceEEEEEecCCcEEEEcCCcEEEEe
Q 018395 233 KAMCSPGFSCDSALQVTYIVRGSGRAQIVGPDGKRVLETTVKAGNLFIVPRFYVVSKI 290 (356)
Q Consensus 233 g~~~~PH~h~~~A~ei~~v~~G~~~~~iv~~~g~~~~~~~l~~Gdv~vvP~g~~h~~~ 290 (356)
+....||||. ..|+.||++|++.+.+ +|+. ..+.+||+++||+|..|...
T Consensus 33 ~~~~~~H~H~--~~ei~~v~~G~~~~~i---~~~~---~~l~~g~l~~i~p~~~H~~~ 82 (278)
T PRK10296 33 ESVSGLHQHD--YYEFTLVLTGRYYQEI---NGKR---VLLERGDFVFIPLGSHHQSF 82 (278)
T ss_pred hcCCCCcccc--cEEEEEEEeceEEEEE---CCEE---EEECCCcEEEeCCCCcccee
Confidence 3356899995 6899999999998776 3333 47999999999999999763
No 84
>TIGR02451 anti_sig_ChrR anti-sigma factor, putative, ChrR family. The member of this family from Rhodobacter sphaeroides has been shown both to form a complex with sigma(E) and to negatively regulate tetrapyrrole biosynthesis. This protein likely contains (at least) two distinct functional domains; several smaller homologs (excluded by the model) show homology only to the C-terminal, including a motif PxHxHxGxE.
Probab=96.96 E-value=0.0031 Score=57.42 Aligned_cols=71 Identities=7% Similarity=0.064 Sum_probs=58.4
Q ss_pred ceeEEEEecCCCeecccccccCCeeEEEEEeceEEEEEEccCCceEEEEEecCCcEEEEcCCcEEEEeeC-CCCeEEEEE
Q 018395 223 CGADLVRLDGKAMCSPGFSCDSALQVTYIVRGSGRAQIVGPDGKRVLETTVKAGNLFIVPRFYVVSKIAD-PDGLAWFSI 301 (356)
Q Consensus 223 ~s~~~v~l~~g~~~~PH~h~~~A~ei~~v~~G~~~~~iv~~~g~~~~~~~l~~Gdv~vvP~g~~h~~~~~-~~~~~~~~~ 301 (356)
..+..+++.||+-++.|.|. ..|+.+|++|+. .+.. ..+.+||++..|.|..|...+. .+++..+++
T Consensus 127 ~~v~Ll~i~pG~~~p~H~H~--G~E~tlVLeG~f----~de~------g~y~~Gd~i~~p~~~~H~p~a~~~~~Cicl~v 194 (215)
T TIGR02451 127 ARVRLLYIEAGQSIPQHTHK--GFELTLVLHGAF----SDET------GVYGVGDFEEADGSVQHQPRTVSGGDCLCLAV 194 (215)
T ss_pred cEEEEEEECCCCccCCCcCC--CcEEEEEEEEEE----EcCC------CccCCCeEEECCCCCCcCcccCCCCCeEEEEE
Confidence 56889999999999999995 679999999994 3433 2578999999999999998775 467888888
Q ss_pred EcCC
Q 018395 302 ITTP 305 (356)
Q Consensus 302 ~~~~ 305 (356)
.+..
T Consensus 195 ~dap 198 (215)
T TIGR02451 195 LDAP 198 (215)
T ss_pred ecCC
Confidence 7443
No 85
>PRK10371 DNA-binding transcriptional regulator MelR; Provisional
Probab=96.81 E-value=0.0031 Score=60.35 Aligned_cols=59 Identities=8% Similarity=0.036 Sum_probs=47.0
Q ss_pred eEEEEecCCCeecccccccCCeeEEEEEeceEEEEEEccCCceEEEEEecCCcEEEEcCCcEEEEee
Q 018395 225 ADLVRLDGKAMCSPGFSCDSALQVTYIVRGSGRAQIVGPDGKRVLETTVKAGNLFIVPRFYVVSKIA 291 (356)
Q Consensus 225 ~~~v~l~~g~~~~PH~h~~~A~ei~~v~~G~~~~~iv~~~g~~~~~~~l~~Gdv~vvP~g~~h~~~~ 291 (356)
.+.-.-.+..|..+|||. --|+.|+++|++.+.+- |+ ...+.+||+++|+.|.+|....
T Consensus 28 ~~~~~~~~~~m~~~HwH~--e~Ei~yv~~G~~~~~i~---g~---~~~l~~Gd~ili~s~~~H~~~~ 86 (302)
T PRK10371 28 LEIEFRPPHIMPTSHWHG--QVEVNVPFDGDVEYLIN---NE---KVQINQGHITLFWACTPHQLTD 86 (302)
T ss_pred eEEEeeCCCCCCCCCccc--cEEEEEecCCcEEEEEC---CE---EEEEcCCcEEEEecCCcccccc
Confidence 444556778899999996 47999999999876653 22 2579999999999999998643
No 86
>PRK13500 transcriptional activator RhaR; Provisional
Probab=96.79 E-value=0.0048 Score=59.21 Aligned_cols=54 Identities=13% Similarity=0.109 Sum_probs=42.6
Q ss_pred CCCeecccccccCCeeEEEEEeceEEEEEEccCCceEEEEEecCCcEEEEcCCcEEEEeeCC
Q 018395 232 GKAMCSPGFSCDSALQVTYIVRGSGRAQIVGPDGKRVLETTVKAGNLFIVPRFYVVSKIADP 293 (356)
Q Consensus 232 ~g~~~~PH~h~~~A~ei~~v~~G~~~~~iv~~~g~~~~~~~l~~Gdv~vvP~g~~h~~~~~~ 293 (356)
|.....+|||. ..||+||++|++...+=+ + ...+.+||+++||+|.+|.....+
T Consensus 57 ~~~~~~~H~H~--~~el~~v~~G~g~~~v~~---~---~~~l~~Gdl~~I~~~~~H~~~~~~ 110 (312)
T PRK13500 57 PQDVFAEHTHD--FCELVIVWRGNGLHVLND---R---PYRITRGDLFYIHADDKHSYASVN 110 (312)
T ss_pred CCCCCCccccc--eEEEEEEEcCeEEEEECC---E---EEeecCCeEEEECCCCeecccccC
Confidence 33346899995 789999999999866533 2 357999999999999999975433
No 87
>PF13621 Cupin_8: Cupin-like domain; PDB: 3AL6_C 3AL5_C 2XUM_A 2Y0I_A 1MZE_A 3KCY_A 1MZF_A 1YCI_A 2ILM_A 1H2L_A ....
Probab=96.77 E-value=0.0074 Score=55.23 Aligned_cols=65 Identities=20% Similarity=0.201 Sum_probs=47.5
Q ss_pred EEEEecC-CCcccCeeeCCCEEEEEEeCeEEEEEEcCCC-----------------------------------ceEEEE
Q 018395 40 AKLALEK-NGFALPHYCDSARVAYVLQGSGVAGIVLPEK-----------------------------------EEKVVA 83 (356)
Q Consensus 40 ~~~~l~P-g~~~~pH~h~a~e~~yVl~G~~~~~vv~~~~-----------------------------------~~~~~~ 83 (356)
..+-|.+ |+....|+...+-++.+++|+=++.++.|.. +.....
T Consensus 133 ~~l~ig~~gs~t~lH~D~~~n~~~~i~G~K~~~L~pP~~~~~l~~~~~~~~~~~~~~~d~~~~d~~~~p~~~~~~~~~~~ 212 (251)
T PF13621_consen 133 SNLWIGPPGSFTPLHYDPSHNLLAQIRGRKRWILFPPDDSPNLYPRPDSHGGTVFSWVDPDNPDLERFPKFRKAPPYEVV 212 (251)
T ss_dssp EEEEEE-TTEEEEEEE-SSEEEEEEEESEEEEEEE-GGGGGGCTBETTTST-TCBBSS-TTS--TTT-CGGGG--EEEEE
T ss_pred cEEEEeCCCceeeeeECchhhhhhccCCCEEEEEECCccccccccceecccccceeeeeccChhhhhhhhhccCceeEEE
Confidence 3455555 6677888877788999999999999988751 124689
Q ss_pred EcCCCEEEeCCCcEEEEEecC
Q 018395 84 IKKGDGIALPFGVVTWWYNKE 104 (356)
Q Consensus 84 l~~GDv~~iP~G~~H~~~N~g 104 (356)
|++||+++||+|+.|++.|..
T Consensus 213 l~pGD~LfiP~gWwH~V~~~~ 233 (251)
T PF13621_consen 213 LEPGDVLFIPPGWWHQVENLS 233 (251)
T ss_dssp EETT-EEEE-TT-EEEEEEST
T ss_pred ECCCeEEEECCCCeEEEEEcC
Confidence 999999999999999999983
No 88
>PRK05341 homogentisate 1,2-dioxygenase; Provisional
Probab=96.75 E-value=0.071 Score=52.93 Aligned_cols=207 Identities=11% Similarity=-0.008 Sum_probs=109.5
Q ss_pred Ceee-CCCEEEEEEeCeEEEEEEcCCCceEEEEEcCCCEEEeCCCcEEEEEecCCCcEEEEEEeeCC-CCCCCCceeEEe
Q 018395 52 PHYC-DSARVAYVLQGSGVAGIVLPEKEEKVVAIKKGDGIALPFGVVTWWYNKEDTELVVLFLGDTS-KGHKAGEFTNFF 129 (356)
Q Consensus 52 pH~h-~a~e~~yVl~G~~~~~vv~~~~~~~~~~l~~GDv~~iP~G~~H~~~N~g~e~l~~l~i~~~~-~~~~pg~~~~f~ 129 (356)
.-++ ++++++|+.+|++.+.-. -|+ .++++||+++||+|+.+.+.= .+.+.+.+.+-..+ ++.-|..=
T Consensus 148 ~f~NaDGD~Livpq~G~l~i~TE--fG~---L~v~pgei~VIPRG~~frv~l-~~gp~rgyi~E~~g~~f~LPdlG---- 217 (438)
T PRK05341 148 YFYNADGELLIVPQQGRLRLATE--LGV---LDVEPGEIAVIPRGVKFRVEL-PDGPARGYVCENYGAPFRLPDLG---- 217 (438)
T ss_pred eeecCCCCEEEEEEeCCEEEEEe--ccc---eEecCCCEEEEcCccEEEEec-CCCCeeEEEEEecCCcccCCCCC----
Confidence 3355 999999999999999642 232 699999999999999988763 23344444433222 34445310
Q ss_pred ecccccccccCcHHHHHhhccCCHHHHHHhhcccCCceEEEcCCCCcC----CCCC-----cccCCCceeeccCCCCC--
Q 018395 130 LTGANGIFTGFSTEFVSRAWDLDENTVKTLVGKQTGKGIVKLDANAKL----PEPK-----KEHRDGMAFNCEEAPLD-- 198 (356)
Q Consensus 130 lag~~s~l~~~~~~vl~~af~~~~~~~~~l~~~q~~~~iv~~~~~~~~----~~p~-----~~~~~~~~~~l~~~~~~-- 198 (356)
..|.+.+.. ++ -|..+....+.. ...-.+++|....... -.|- ...-.+++|||..=.|.
T Consensus 218 piG~nglan--pR-----DF~~P~a~~ed~--~~~~~vv~K~~G~l~~~~~~hsPfDVVaWhGn~~Pykydl~~F~pi~s 288 (438)
T PRK05341 218 PIGANGLAN--PR-----DFLTPVAAFEDR--EGPFELVAKFGGRLWRAEIDHSPLDVVAWHGNYAPYKYDLRRFNTIGS 288 (438)
T ss_pred cccccCCCC--hh-----HcCCCcchhccc--CCCEEEEEEeCCeeEEEecCCCCceEeeecCcccceEeehhheeeccc
Confidence 013222221 11 122222222221 1112345554432211 1231 12224567777743332
Q ss_pred c----ccCCCcEEEEeCCCCCCCccccCcee--EEEEecCCCeecccccccCCeeEEEEEeceEEEEEEccCCceEEEEE
Q 018395 199 V----DIKNGGRVVLLNTKNLPLVGEVGCGA--DLVRLDGKAMCSPGFSCDSALQVTYIVRGSGRAQIVGPDGKRVLETT 272 (356)
Q Consensus 199 ~----~~~~gG~~~~~~~~~~p~l~~l~~s~--~~v~l~~g~~~~PH~h~~~A~ei~~v~~G~~~~~iv~~~g~~~~~~~ 272 (356)
+ -.+.--.+.++ +.+-|.....+.-+ -|---.+++++.|.+|.|-.+|+++.+.|.-... ...
T Consensus 289 vs~dH~dPSI~tvlta-ps~~pg~a~~dFVIF~PRw~v~e~TfrpPyyHrNv~sEfmgli~G~y~ak----------~~g 357 (438)
T PRK05341 289 ISFDHPDPSIFTVLTS-PSDTPGTANIDFVIFPPRWLVAENTFRPPWFHRNVMSEFMGLIHGVYDAK----------AEG 357 (438)
T ss_pred cccccCCCCceEEEec-cCCCCCccccceEEECCcccCCCCccCCCCCccchhhhhhhhcccccccc----------ccC
Confidence 0 01111122222 22344433222111 0111278999999999998889888888864221 113
Q ss_pred ecCCcEEEEcCCcEEE
Q 018395 273 VKAGNLFIVPRFYVVS 288 (356)
Q Consensus 273 l~~Gdv~vvP~g~~h~ 288 (356)
+.+|.+-.=|.+.+|=
T Consensus 358 f~pGg~SLH~~~~pHG 373 (438)
T PRK05341 358 FVPGGASLHNCMSPHG 373 (438)
T ss_pred cCCCeeeecCCCCCCC
Confidence 7789999999998874
No 89
>PF14499 DUF4437: Domain of unknown function (DUF4437); PDB: 2QDR_A.
Probab=96.72 E-value=0.0048 Score=57.20 Aligned_cols=72 Identities=14% Similarity=0.101 Sum_probs=44.8
Q ss_pred CceeEEEEecCCCeecccccccCCeeEEEEEeceEEEEEEccCCceEEEEEecCCcEEEEcCCcEEEEee-CCCCeEEEE
Q 018395 222 GCGADLVRLDGKAMCSPGFSCDSALQVTYIVRGSGRAQIVGPDGKRVLETTVKAGNLFIVPRFYVVSKIA-DPDGLAWFS 300 (356)
Q Consensus 222 ~~s~~~v~l~~g~~~~PH~h~~~A~ei~~v~~G~~~~~iv~~~g~~~~~~~l~~Gdv~vvP~g~~h~~~~-~~~~~~~~~ 300 (356)
|.+..+|++.+|=..+||+|+ +++-+||++|..... +.+.-..-|.+|.-+..|+|..|+.-+ +.+.+.|+.
T Consensus 35 g~~~~~vkf~~g~~~pph~H~--~~~~~~Vi~G~~~~~-----~~~a~~~~l~~Gsy~~~PaG~~h~~~~~~~~~~~~~e 107 (251)
T PF14499_consen 35 GPSGMRVKFPAGFSSPPHIHN--ADYRGTVISGELHNG-----DPKAAAMWLPAGSYWFQPAGEPHITAAEGETNLLFIE 107 (251)
T ss_dssp S-EEEEEEE-TT-EE--BEES--S-EEEEEEESEEEET-----TEE-----E-TTEEEEE-TT-EEEETTS-EE-EEEEE
T ss_pred CcceEEEEcCCCccCCCccee--eeEEEEEEEeEEEcC-----CCcccceecCCCceEeccCCCceeeeccCccEEEEEE
Confidence 688999999999999999995 889999999976543 223223469999999999999998644 334466654
No 90
>TIGR01221 rmlC dTDP-4-dehydrorhamnose 3,5-epimerase. This enzyme participates in the biosynthesis of dTDP-L-rhamnose, often as a precursor to LPS O-antigen
Probab=96.68 E-value=0.035 Score=48.89 Aligned_cols=71 Identities=17% Similarity=0.079 Sum_probs=56.3
Q ss_pred ecCCCcccCeee-C--CCEEEEEEeCeEEEEEEcCC------CceEEEEEcC--CCEEEeCCCcEEEEEecCCCcEEEEE
Q 018395 44 LEKNGFALPHYC-D--SARVAYVLQGSGVAGIVLPE------KEEKVVAIKK--GDGIALPFGVVTWWYNKEDTELVVLF 112 (356)
Q Consensus 44 l~Pg~~~~pH~h-~--a~e~~yVl~G~~~~~vv~~~------~~~~~~~l~~--GDv~~iP~G~~H~~~N~g~e~l~~l~ 112 (356)
-.+|.++.+|+| . ...+++|++|+....+|+.- ++....+|.+ +..++||+|..|-..+.+++ ..++.
T Consensus 51 S~~gvlRGlH~q~~~~q~Klv~c~~G~i~dV~VDlR~~SpTfG~~~~~~L~~~~~~~l~IP~G~aHGF~~L~d~-a~v~Y 129 (176)
T TIGR01221 51 SYKGVLRGLHYQRPHPQGKLVRVLRGEVFDVAVDLRRNSPTFGKWVGVLLSAENKRQLWIPEGFAHGFVVLSDE-AEFLY 129 (176)
T ss_pred ecCCEEEEEEECCCCCCceEEEEccCCEEEEEEECCCCcCCCCeEEEEEECCCCCCEEEeCCcceeEEEEcCCC-eEEEE
Confidence 367999999998 4 68999999999999988842 3344567766 67999999999999998766 55555
Q ss_pred Eee
Q 018395 113 LGD 115 (356)
Q Consensus 113 i~~ 115 (356)
..+
T Consensus 130 ~~~ 132 (176)
T TIGR01221 130 KCT 132 (176)
T ss_pred eCC
Confidence 443
No 91
>COG3435 Gentisate 1,2-dioxygenase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=96.68 E-value=0.0053 Score=57.55 Aligned_cols=92 Identities=20% Similarity=0.124 Sum_probs=66.4
Q ss_pred CCeEEEEeCCCCCCCcccCceEEEEEEecCCCcccCeeeCCCEEEEEEeCeEEEEEEcCCCceEEEEEcCCCEEEeCCCc
Q 018395 17 NGGSYHAWCPNELPMLRQGNIGAAKLALEKNGFALPHYCDSARVAYVLQGSGVAGIVLPEKEEKVVAIKKGDGIALPFGV 96 (356)
Q Consensus 17 ~~G~i~~~~~~~~p~l~~~~~~~~~~~l~Pg~~~~pH~h~a~e~~yVl~G~~~~~vv~~~~~~~~~~l~~GDv~~iP~G~ 96 (356)
+|-.++.+++.+- .-....+++.+--|.||....+|.|....++-|.+|+|.+.| ++ +.++..+||+|++|.=.
T Consensus 242 dG~~~ryvNP~TG-g~~mptI~a~mqlL~~Gf~~~~~r~t~s~iy~V~eGsg~~~I---g~--~rf~~~~~D~fvVPsW~ 315 (351)
T COG3435 242 DGYKMRYVNPVTG-GYAMPTIGAFMQLLPPGFHGKAHRHTDSTIYHVVEGSGYTII---GG--ERFDWSAGDIFVVPSWA 315 (351)
T ss_pred CcceEEEecCCCC-CCcCchHHHHHHhcCCcccCCceeccCCEEEEEEecceeEEE---CC--EEeeccCCCEEEccCcc
Confidence 4555566654331 111123444556789999999999977789999999999987 33 44899999999999999
Q ss_pred EEEEEecCCCcEEEEEEee
Q 018395 97 VTWWYNKEDTELVVLFLGD 115 (356)
Q Consensus 97 ~H~~~N~g~e~l~~l~i~~ 115 (356)
.|...|. .+++.++|+.|
T Consensus 316 ~~~~~~g-s~da~LFsfsD 333 (351)
T COG3435 316 WHEHVNG-SEDAVLFSFSD 333 (351)
T ss_pred eeecccC-CcceEEEecCC
Confidence 9999886 44566666543
No 92
>TIGR00218 manA mannose-6-phosphate isomerase, class I. The names phosphomannose isomerase and mannose-6-phosphate isomerase are synonomous. This family contains two rather deeply branched groups. One group contains an experimentally determined phosphomannose isomerase of Streptococcus mutans as well as three uncharacterized paralogous proteins of Bacillus subtilis, all at more than 50 % identity to each other, plus a more distant homolog from Archaeoglobus fulgidus. The other group contains members from E. coli, budding yeast, Borrelia burgdorferi, etc.
Probab=96.64 E-value=0.035 Score=53.12 Aligned_cols=60 Identities=23% Similarity=0.333 Sum_probs=39.8
Q ss_pred ceeEEEEecCCCeecccccccCCeeEEEEEeceEEEEEEccCCceEEEEEecCCcEEEEcCCcEEEEeeC
Q 018395 223 CGADLVRLDGKAMCSPGFSCDSALQVTYIVRGSGRAQIVGPDGKRVLETTVKAGNLFIVPRFYVVSKIAD 292 (356)
Q Consensus 223 ~s~~~v~l~~g~~~~PH~h~~~A~ei~~v~~G~~~~~iv~~~g~~~~~~~l~~Gdv~vvP~g~~h~~~~~ 292 (356)
.++.++++...... ...+ ...+++|++|++++.. ++. +..|++|+.++||++...+.+.+
T Consensus 235 F~~~~~~~~~~~~~---~~~~-~~~il~v~~G~~~i~~---~~~---~~~l~~G~~~~ipa~~~~~~i~g 294 (302)
T TIGR00218 235 FSVYKWDISGKAEF---IQQQ-SALILSVLEGSGRIKS---GGK---TLPLKKGESFFIPAHLGPFTIEG 294 (302)
T ss_pred eEEEEEEeCCceee---ccCC-CcEEEEEEcceEEEEE---CCE---EEEEecccEEEEccCCccEEEEe
Confidence 44556666543111 1233 5679999999998752 222 24799999999999987666544
No 93
>COG1898 RfbC dTDP-4-dehydrorhamnose 3,5-epimerase and related enzymes [Cell envelope biogenesis, outer membrane]
Probab=96.63 E-value=0.015 Score=50.98 Aligned_cols=97 Identities=16% Similarity=0.165 Sum_probs=66.2
Q ss_pred ceeeCCCeEEEEeCC-CCCC------CcccCceEEEEEEecCCCcccCeee-CC-CEEEEEEeCeEEEEEEcCC------
Q 018395 12 QVYGGNGGSYHAWCP-NELP------MLRQGNIGAAKLALEKNGFALPHYC-DS-ARVAYVLQGSGVAGIVLPE------ 76 (356)
Q Consensus 12 ~~~~~~~G~i~~~~~-~~~p------~l~~~~~~~~~~~l~Pg~~~~pH~h-~a-~e~~yVl~G~~~~~vv~~~------ 76 (356)
.++.-+-|.+.++-. ..+- .....+++... ||.++..||| .- .+++.|++|+....+++-.
T Consensus 17 ~~~~D~RG~F~E~~~~~~~~~~~~~~~~~Q~n~S~S~----~GvlRGlHyq~~~q~klv~~v~G~v~dv~vDlR~~SpTy 92 (173)
T COG1898 17 KVFGDERGFFTETFKAEEFSTLGLPLDFVQDNHSFSY----PGVLRGLHYQHKPQGKLVRVVSGKVFDVAVDLRKDSPTY 92 (173)
T ss_pred cccccccceeeehhhhhhhhhccCccccccceEEEec----CCeeEEEEcccCCCCeEEEEecCeEEEEEEEccCCCCCc
Confidence 345556677765432 1121 12224555444 9999999999 55 8999999999999888743
Q ss_pred CceEEEEEcC--CCEEEeCCCcEEEEEecCCCcEEEEEE
Q 018395 77 KEEKVVAIKK--GDGIALPFGVVTWWYNKEDTELVVLFL 113 (356)
Q Consensus 77 ~~~~~~~l~~--GDv~~iP~G~~H~~~N~g~e~l~~l~i 113 (356)
++.....|.+ ...++||+|++|-++|.+++. .++..
T Consensus 93 g~~~~~~ls~~N~~~l~IP~G~AHGf~~L~d~~-~~~y~ 130 (173)
T COG1898 93 GKWVGVVLSAENKRQLYIPPGFAHGFQVLSDDA-EVVYK 130 (173)
T ss_pred ceEEEEEecCCCceEEEeCCcccceeEEccCce-EEEEE
Confidence 1223345554 489999999999999999885 44443
No 94
>PRK13501 transcriptional activator RhaR; Provisional
Probab=96.63 E-value=0.0065 Score=57.45 Aligned_cols=48 Identities=13% Similarity=0.155 Sum_probs=40.1
Q ss_pred ecccccccCCeeEEEEEeceEEEEEEccCCceEEEEEecCCcEEEEcCCcEEEEee
Q 018395 236 CSPGFSCDSALQVTYIVRGSGRAQIVGPDGKRVLETTVKAGNLFIVPRFYVVSKIA 291 (356)
Q Consensus 236 ~~PH~h~~~A~ei~~v~~G~~~~~iv~~~g~~~~~~~l~~Gdv~vvP~g~~h~~~~ 291 (356)
..||||. -.|+.||++|++.+.| +|+ ...+.+||+++||.|.+|....
T Consensus 31 ~~~H~H~--~~ei~~i~~G~~~~~i---~~~---~~~l~~g~~~~I~p~~~H~~~~ 78 (290)
T PRK13501 31 FVEHTHQ--FCEIVIVWRGNGLHVL---NDH---PYRITCGDVFYIQAADHHSYES 78 (290)
T ss_pred Ccccccc--ceeEEEEecCceEEEE---CCe---eeeecCCeEEEEcCCCcccccc
Confidence 5699995 6899999999999886 332 3579999999999999999743
No 95
>PRK15131 mannose-6-phosphate isomerase; Provisional
Probab=96.59 E-value=0.058 Score=53.46 Aligned_cols=61 Identities=13% Similarity=0.125 Sum_probs=40.8
Q ss_pred ceeEEEEecCCCeecccccccCCeeEEEEEeceEEEEEEccCCceEEEEEecCCcEEEEcCCcEEEEeeCC
Q 018395 223 CGADLVRLDGKAMCSPGFSCDSALQVTYIVRGSGRAQIVGPDGKRVLETTVKAGNLFIVPRFYVVSKIADP 293 (356)
Q Consensus 223 ~s~~~v~l~~g~~~~PH~h~~~A~ei~~v~~G~~~~~iv~~~g~~~~~~~l~~Gdv~vvP~g~~h~~~~~~ 293 (356)
..+.++++..+.... ... ..+|++|++|++++. + .|.+ ..|++|++++||++...+...++
T Consensus 321 F~~~~~~l~~~~~~~---~~~-~~~Illv~~G~~~i~--~-~~~~---~~l~~G~~~fipa~~~~~~~~g~ 381 (389)
T PRK15131 321 FAFSLHDLSDQPTTL---SQQ-SAAILFCVEGEAVLW--K-GEQQ---LTLKPGESAFIAANESPVTVSGH 381 (389)
T ss_pred cEEEEEEECCceEEe---cCC-CcEEEEEEcceEEEE--e-CCeE---EEECCCCEEEEeCCCccEEEecc
Confidence 345555555432222 224 568999999999874 2 3323 46999999999999887776543
No 96
>PF04209 HgmA: homogentisate 1,2-dioxygenase; InterPro: IPR005708 Alkaptonuria (AKU), a rare hereditary disorder, was the first disease to be interpreted as an inborn error of metabolism. The deficiency causes homogentisic aciduria, ochronosis, and arthritis. AKU patients are deficient for homogentisate 1,2 dioxygenase (1.13.11.5 from EC), the enzyme that mediates the conversion of homogentisate to maleylacetoacetate; a step in the catabolism of both tyrosine and phenylalanine. Homogentisate + O(2) = 4-maleylacetoacetate. ; GO: 0004411 homogentisate 1,2-dioxygenase activity, 0006559 L-phenylalanine catabolic process, 0006570 tyrosine metabolic process, 0055114 oxidation-reduction process; PDB: 1EY2_A 1EYB_A.
Probab=96.50 E-value=0.01 Score=58.78 Aligned_cols=201 Identities=13% Similarity=0.054 Sum_probs=78.1
Q ss_pred ee-CCCEEEEEEeCeEEEEEEcCCCceEEEEEcCCCEEEeCCCcEEEEEecCCCcEEEEEEee-CCCCCCCCceeEEeec
Q 018395 54 YC-DSARVAYVLQGSGVAGIVLPEKEEKVVAIKKGDGIALPFGVVTWWYNKEDTELVVLFLGD-TSKGHKAGEFTNFFLT 131 (356)
Q Consensus 54 ~h-~a~e~~yVl~G~~~~~vv~~~~~~~~~~l~~GDv~~iP~G~~H~~~N~g~e~l~~l~i~~-~~~~~~pg~~~~f~la 131 (356)
++ ++++++|+.+|++++.- +-| ...+++||.++||+|+.+.+.=. ++++.+.+-. .+++.-|. .=.-
T Consensus 142 ~NaDGD~Li~~q~G~l~l~T--e~G---~L~v~pGd~~VIPRG~~~rv~l~--~p~rgyi~E~~~~~~~lPe----~G~i 210 (424)
T PF04209_consen 142 RNADGDELIFPQQGSLRLET--EFG---RLDVRPGDYVVIPRGTRFRVELP--GPARGYIIENFGSHFRLPE----LGPI 210 (424)
T ss_dssp EESSEEEEEEEEES-EEEEE--TTE---EEEE-TTEEEEE-TT--EEEE-S--SSEEEEEEEEES--EE--------GGG
T ss_pred EcCCCCEEEEEEECCEEEEe--cCe---eEEEcCCeEEEECCeeEEEEEeC--CCceEEEEEcCCCeEEecC----cCcc
Confidence 46 89999999999999864 223 26899999999999999987655 4566655432 23333331 1111
Q ss_pred ccccccccCcHHHHHhhccCCHHHHHHhhcccCCceEEEcCCCCcC----CCCC-----cccCCCceeeccCCCCCcccC
Q 018395 132 GANGIFTGFSTEFVSRAWDLDENTVKTLVGKQTGKGIVKLDANAKL----PEPK-----KEHRDGMAFNCEEAPLDVDIK 202 (356)
Q Consensus 132 g~~s~l~~~~~~vl~~af~~~~~~~~~l~~~q~~~~iv~~~~~~~~----~~p~-----~~~~~~~~~~l~~~~~~~~~~ 202 (356)
|.++.+. + .-|..+....+.-. ..-.+++|....... -.|- ...--+++|||..-.|..
T Consensus 211 G~ngla~--~-----RDf~~P~a~~~d~~--~~~~v~~K~~G~l~~~~~~hsPfDVVgW~Gn~~Pykynl~~F~pi~--- 278 (424)
T PF04209_consen 211 GANGLAN--P-----RDFRTPVAAFEDDE--GEWEVVVKFRGGLFSATYPHSPFDVVGWHGNYYPYKYNLRDFEPIN--- 278 (424)
T ss_dssp TTS-BS---G-----GGEEEE-------E--EEEEEEEEETTEEEEEEEEE-S--EEEEEES---EEEEGGG-B------
T ss_pred ccCCCCC--h-----hhhcCCCcccccCC--CCEEEEEEECCeeEEEEeCCCchheeeecCccccEEEehHHhhhhc---
Confidence 3222221 1 12222221111111 122355554433210 1231 122346788888544321
Q ss_pred CCcEEE-EeCCCCCCCc----cccCceeEE-E------EecCCCeecccccccCCeeEEEEEeceEEEEEEccCCceEEE
Q 018395 203 NGGRVV-LLNTKNLPLV----GEVGCGADL-V------RLDGKAMCSPGFSCDSALQVTYIVRGSGRAQIVGPDGKRVLE 270 (356)
Q Consensus 203 ~gG~~~-~~~~~~~p~l----~~l~~s~~~-v------~l~~g~~~~PH~h~~~A~ei~~v~~G~~~~~iv~~~g~~~~~ 270 (356)
+.+. ..++.-|-.| ..-|..+.. | ....+.++.|.+|.|-.+|.++.+.|.-... .
T Consensus 279 --s~~~dH~dPsi~tvlT~ps~~~g~~v~dFviF~PRw~v~e~tfrpPyyHrNv~sE~mg~i~G~y~a~----------~ 346 (424)
T PF04209_consen 279 --SVSYDHPDPSIHTVLTAPSEAPGFAVCDFVIFPPRWLVAEHTFRPPYYHRNVMSEFMGLIRGNYDAS----------R 346 (424)
T ss_dssp ---SSSS---GGGGEEEEEE-SSTT-EEEEEEEE-SEEE--TTS--S---B--SSEEEEEEEE-----------------
T ss_pred --ceecccCCCceeEEEeccCCCCCceEEEEEeeCCcccccCCCccCCCCCcceeeeeeeeeccccccc----------c
Confidence 1110 1111111111 111222222 2 2344788999999997778777777764221 1
Q ss_pred EEecCCcEEEEcCCcEEEE
Q 018395 271 TTVKAGNLFIVPRFYVVSK 289 (356)
Q Consensus 271 ~~l~~Gdv~vvP~g~~h~~ 289 (356)
..+.+|.+-.=|.|.+|=-
T Consensus 347 ~gf~pGg~SLH~~~~pHGP 365 (424)
T PF04209_consen 347 DGFEPGGISLHPCGTPHGP 365 (424)
T ss_dssp ----TT-EEEE-TT--B--
T ss_pred CCcCCCceeccCCCCCCCC
Confidence 2478999999999999964
No 97
>TIGR02297 HpaA 4-hydroxyphenylacetate catabolism regulatory protein HpaA. This putative transcriptional regulator, which contains both the substrate-binding, dimerization domain (pfam02311) and the helix-turn-helix DNA-binding domain (pfam00165) of the AraC famil, is located proximal to genes of the 4-hydroxyphenylacetate catabolism pathway.
Probab=96.42 E-value=0.0066 Score=57.11 Aligned_cols=52 Identities=19% Similarity=0.152 Sum_probs=42.2
Q ss_pred CCeecccccccCCeeEEEEEeceEEEEEEccCCceEEEEEecCCcEEEEcCCcEEEEee
Q 018395 233 KAMCSPGFSCDSALQVTYIVRGSGRAQIVGPDGKRVLETTVKAGNLFIVPRFYVVSKIA 291 (356)
Q Consensus 233 g~~~~PH~h~~~A~ei~~v~~G~~~~~iv~~~g~~~~~~~l~~Gdv~vvP~g~~h~~~~ 291 (356)
+....||||.+ -.|++||++|++.+.+- + + ...+++||++++|+|.+|....
T Consensus 33 ~~~~~~H~H~~-~~~l~~~~~G~~~~~~~---~-~--~~~l~~g~~~ii~~~~~H~~~~ 84 (287)
T TIGR02297 33 GRNMPVHFHDR-YYQLHYLTEGSIALQLD---E-H--EYSEYAPCFFLTPPSVPHGFVT 84 (287)
T ss_pred CCCCCCccccc-ceeEEEEeeCceEEEEC---C-E--EEEecCCeEEEeCCCCcccccc
Confidence 44578999975 58999999999976653 2 2 3579999999999999999754
No 98
>PF13621 Cupin_8: Cupin-like domain; PDB: 3AL6_C 3AL5_C 2XUM_A 2Y0I_A 1MZE_A 3KCY_A 1MZF_A 1YCI_A 2ILM_A 1H2L_A ....
Probab=96.38 E-value=0.021 Score=52.19 Aligned_cols=66 Identities=12% Similarity=0.182 Sum_probs=48.0
Q ss_pred eEEEEecC-CCeecccccccCCeeEEEEEeceEEEEEEccCC----------------------------------ceEE
Q 018395 225 ADLVRLDG-KAMCSPGFSCDSALQVTYIVRGSGRAQIVGPDG----------------------------------KRVL 269 (356)
Q Consensus 225 ~~~v~l~~-g~~~~PH~h~~~A~ei~~v~~G~~~~~iv~~~g----------------------------------~~~~ 269 (356)
...+-+.+ |+....|+.+ .+-+..+++|+=++.++.|.- .+.+
T Consensus 132 ~~~l~ig~~gs~t~lH~D~--~~n~~~~i~G~K~~~L~pP~~~~~l~~~~~~~~~~~~~~~d~~~~d~~~~p~~~~~~~~ 209 (251)
T PF13621_consen 132 SSNLWIGPPGSFTPLHYDP--SHNLLAQIRGRKRWILFPPDDSPNLYPRPDSHGGTVFSWVDPDNPDLERFPKFRKAPPY 209 (251)
T ss_dssp EEEEEEE-TTEEEEEEE-S--SEEEEEEEESEEEEEEE-GGGGGGCTBETTTST-TCBBSS-TTS--TTT-CGGGG--EE
T ss_pred ccEEEEeCCCceeeeeECc--hhhhhhccCCCEEEEEECCccccccccceecccccceeeeeccChhhhhhhhhccCcee
Confidence 45567766 6677788876 467999999999999999951 0356
Q ss_pred EEEecCCcEEEEcCCcEEEEeeC
Q 018395 270 ETTVKAGNLFIVPRFYVVSKIAD 292 (356)
Q Consensus 270 ~~~l~~Gdv~vvP~g~~h~~~~~ 292 (356)
..+|++||+++||+||+|+..+-
T Consensus 210 ~~~l~pGD~LfiP~gWwH~V~~~ 232 (251)
T PF13621_consen 210 EVVLEPGDVLFIPPGWWHQVENL 232 (251)
T ss_dssp EEEEETT-EEEE-TT-EEEEEES
T ss_pred EEEECCCeEEEECCCCeEEEEEc
Confidence 77999999999999999999775
No 99
>PF06249 EutQ: Ethanolamine utilisation protein EutQ; InterPro: IPR010424 The eut operon of Salmonella typhimurium encodes proteins involved in the cobalamin-dependent degradation of ethanolamine. The role of EutQ in this process is unclear [].; PDB: 2PYT_B 3LWC_A.
Probab=96.38 E-value=0.017 Score=49.41 Aligned_cols=70 Identities=20% Similarity=0.366 Sum_probs=46.8
Q ss_pred CceeEEEEecCCCeecccccccCCeeEEEEEeceEEEEEEccCCceEEEEEecCCcEEEEcCCcEEEEeeCCCCeEEEEE
Q 018395 222 GCGADLVRLDGKAMCSPGFSCDSALQVTYIVRGSGRAQIVGPDGKRVLETTVKAGNLFIVPRFYVVSKIADPDGLAWFSI 301 (356)
Q Consensus 222 ~~s~~~v~l~~g~~~~PH~h~~~A~ei~~v~~G~~~~~iv~~~g~~~~~~~l~~Gdv~vvP~g~~h~~~~~~~~~~~~~~ 301 (356)
.|++..++|+.. ..-|... =.|+-||++|+..+. + +|+. ...++|||++||+|.-..... .+.++++-+
T Consensus 76 ~l~~Gf~~le~~---~f~wtl~-YDEi~~VlEG~L~i~--~-~G~~---~~A~~GDvi~iPkGs~I~fst-~~~a~~~Yv 144 (152)
T PF06249_consen 76 RLSAGFMELEKT---SFPWTLT-YDEIKYVLEGTLEIS--I-DGQT---VTAKPGDVIFIPKGSTITFST-PDYARFFYV 144 (152)
T ss_dssp SSEEEEEEEEEE---EEEEE-S-SEEEEEEEEEEEEEE--E-TTEE---EEEETT-EEEE-TT-EEEEEE-EEEEEEEEE
T ss_pred ceeeEEEEEeCC---CccEEee-cceEEEEEEeEEEEE--E-CCEE---EEEcCCcEEEECCCCEEEEec-CCCEEEEEE
Confidence 477888888874 3468887 899999999987766 2 3544 357899999999997765532 334555544
Q ss_pred E
Q 018395 302 I 302 (356)
Q Consensus 302 ~ 302 (356)
.
T Consensus 145 ~ 145 (152)
T PF06249_consen 145 T 145 (152)
T ss_dssp E
T ss_pred E
Confidence 3
No 100
>PRK13502 transcriptional activator RhaR; Provisional
Probab=96.33 E-value=0.015 Score=54.69 Aligned_cols=56 Identities=13% Similarity=0.080 Sum_probs=43.9
Q ss_pred ecCCCeecccccccCCeeEEEEEeceEEEEEEccCCceEEEEEecCCcEEEEcCCcEEEEeeCC
Q 018395 230 LDGKAMCSPGFSCDSALQVTYIVRGSGRAQIVGPDGKRVLETTVKAGNLFIVPRFYVVSKIADP 293 (356)
Q Consensus 230 l~~g~~~~PH~h~~~A~ei~~v~~G~~~~~iv~~~g~~~~~~~l~~Gdv~vvP~g~~h~~~~~~ 293 (356)
..|+-...+|||. ..|+.||++|++++.+-+ + ...+++||+++||+|-+|.....+
T Consensus 25 ~~~~~~~~~H~h~--~~~l~~v~~G~~~~~i~~---~---~~~l~~g~l~li~~~~~H~~~~~~ 80 (282)
T PRK13502 25 RYPQDVFAEHTHE--FCELVMVWRGNGLHVLNE---R---PYRITRGDLFYIRAEDKHSYTSVN 80 (282)
T ss_pred CCCCCCCCccccc--eEEEEEEecCcEEEEECC---E---EEeecCCcEEEECCCCcccccccC
Confidence 3444447899995 689999999999988632 2 257999999999999999875433
No 101
>PF06052 3-HAO: 3-hydroxyanthranilic acid dioxygenase; InterPro: IPR010329 Members of this protein family, from both bacteria and eukaryotes, are the enzyme 3-hydroxyanthranilate 3,4-dioxygenase (1.13.11.6 from EC). It is part of the kynurenine pathway for the degradation of tryptophan and the biosynthesis of nicotinic acid [].The prokaryotic homologue is involved in the 2-nitrobenzoate degradation pathway []. The enzyme acts on the tryptophan metabolite 3-hydroxyanthranilate and produces 2-amino-3-carboxymuconate semialdehyde, which can rearrange spontaneously to quinolinic acid and feed into nicotinamide biosynthesis, or undergo further enzymatic degradation.; GO: 0000334 3-hydroxyanthranilate 3,4-dioxygenase activity, 0005506 iron ion binding, 0008152 metabolic process, 0055114 oxidation-reduction process; PDB: 1ZVF_A 1YFX_A 1YFW_A 1YFY_A 1YFU_A 2QNK_A 3FE5_A.
Probab=96.28 E-value=0.011 Score=49.95 Aligned_cols=55 Identities=15% Similarity=0.282 Sum_probs=36.3
Q ss_pred cCCCeecccccccCCeeEEEEEeceEEEEEEccCCceEEEEEecCCcEEEEcCCcEEEE
Q 018395 231 DGKAMCSPGFSCDSALQVTYIVRGSGRAQIVGPDGKRVLETTVKAGNLFIVPRFYVVSK 289 (356)
Q Consensus 231 ~~g~~~~PH~h~~~A~ei~~v~~G~~~~~iv~~~g~~~~~~~l~~Gdv~vvP~g~~h~~ 289 (356)
.|+.-. -||.+.+.|+.|-++|...+-+++.. +. -+-.+++||+|..|++.+|.-
T Consensus 41 GPN~R~--DyHine~eE~FyQ~kG~m~Lkv~e~g-~~-kdi~I~EGe~fLLP~~vpHsP 95 (151)
T PF06052_consen 41 GPNQRT--DYHINETEEFFYQLKGDMCLKVVEDG-KF-KDIPIREGEMFLLPANVPHSP 95 (151)
T ss_dssp SSB--S--SEEE-SS-EEEEEEES-EEEEEEETT-EE-EEEEE-TTEEEEE-TT--EEE
T ss_pred CCCCCC--ccccCCcceEEEEEeCcEEEEEEeCC-ce-EEEEeCCCcEEecCCCCCCCC
Confidence 555444 34445578999999999999999954 32 256899999999999999985
No 102
>COG1898 RfbC dTDP-4-dehydrorhamnose 3,5-epimerase and related enzymes [Cell envelope biogenesis, outer membrane]
Probab=96.27 E-value=0.087 Score=46.14 Aligned_cols=69 Identities=9% Similarity=0.012 Sum_probs=54.3
Q ss_pred CCCeecccccccCC-eeEEEEEeceEEEEEEccCCc-----eEEEEEecCC--cEEEEcCCcEEEEeeCCCCeEEEEE
Q 018395 232 GKAMCSPGFSCDSA-LQVTYIVRGSGRAQIVGPDGK-----RVLETTVKAG--NLFIVPRFYVVSKIADPDGLAWFSI 301 (356)
Q Consensus 232 ~g~~~~PH~h~~~A-~ei~~v~~G~~~~~iv~~~g~-----~~~~~~l~~G--dv~vvP~g~~h~~~~~~~~~~~~~~ 301 (356)
+|-++..|||.. - .+++.|++|++..-.+|-.-. +.....|.+- .++.||.|++|=..+-++.++++-.
T Consensus 54 ~GvlRGlHyq~~-~q~klv~~v~G~v~dv~vDlR~~SpTyg~~~~~~ls~~N~~~l~IP~G~AHGf~~L~d~~~~~y~ 130 (173)
T COG1898 54 PGVLRGLHYQHK-PQGKLVRVVSGKVFDVAVDLRKDSPTYGKWVGVVLSAENKRQLYIPPGFAHGFQVLSDDAEVVYK 130 (173)
T ss_pred CCeeEEEEcccC-CCCeEEEEecCeEEEEEEEccCCCCCcceEEEEEecCCCceEEEeCCcccceeEEccCceEEEEE
Confidence 999999999998 6 899999999999999987532 2333356654 8999999999999886665554443
No 103
>TIGR01015 hmgA homogentisate 1,2-dioxygenase. Missing in human disease alkaptonuria.
Probab=96.23 E-value=0.14 Score=50.82 Aligned_cols=213 Identities=12% Similarity=-0.022 Sum_probs=110.4
Q ss_pred cCCCcc--cCeee-CCCEEEEEEeCeEEEEEEcCCCceEEEEEcCCCEEEeCCCcEEEEEecCCCcEEEEEEeeCC-CCC
Q 018395 45 EKNGFA--LPHYC-DSARVAYVLQGSGVAGIVLPEKEEKVVAIKKGDGIALPFGVVTWWYNKEDTELVVLFLGDTS-KGH 120 (356)
Q Consensus 45 ~Pg~~~--~pH~h-~a~e~~yVl~G~~~~~vv~~~~~~~~~~l~~GDv~~iP~G~~H~~~N~g~e~l~~l~i~~~~-~~~ 120 (356)
.++.-+ ..-++ ++++++|+.+|++.+.-. -|+ ..+++||+++||+|+.+.+.=.+ +.+.+.+-..+ ++.
T Consensus 133 ~~~~sM~~~~f~NaDGD~Livpq~G~l~i~TE--fG~---L~v~pgei~VIPRG~~frv~l~g--p~rgyi~E~~g~~f~ 205 (429)
T TIGR01015 133 LCNASMENRAFYNADGDFLIVPQQGALLITTE--FGR---LLVEPNEICVIPRGVRFRVTVLE--PARGYICEVYGAHFQ 205 (429)
T ss_pred eCCCCcccceeeccCCCEEEEEEeCcEEEEEe--ccc---eEecCCCEEEecCccEEEEeeCC--CceEEEEeccCCccc
Confidence 444433 33355 999999999999999642 232 69999999999999999886554 34444332222 344
Q ss_pred CCCceeEEeecccccccccCcHHHHHhhccCCHHHHHHhhcccCCceEEEcCCCCc---C-CCCC-----cccCCCceee
Q 018395 121 KAGEFTNFFLTGANGIFTGFSTEFVSRAWDLDENTVKTLVGKQTGKGIVKLDANAK---L-PEPK-----KEHRDGMAFN 191 (356)
Q Consensus 121 ~pg~~~~f~lag~~s~l~~~~~~vl~~af~~~~~~~~~l~~~q~~~~iv~~~~~~~---~-~~p~-----~~~~~~~~~~ 191 (356)
-|..= ..|++.+.. ++ -|..+...++.......-.+++|...... . -.|- ...-.+++||
T Consensus 206 LPdlG----piG~nglan--~R-----DF~~P~a~fed~~~~~~~~vv~K~~G~l~~~~~~hsPfDVVaWhGn~~Pykyd 274 (429)
T TIGR01015 206 LPDLG----PIGANGLAN--PR-----DFEAPVAAFEDREVPGPYTVINKFQGSLFAAKQDHSPFDVVAWHGNYVPYKYD 274 (429)
T ss_pred CCCCC----cccccCCCC--HH-----HcCCCccchhccccCCCeEEEEEeCCeeEEEecCCCCcceeeecCcccceEee
Confidence 44210 012222221 11 22223222222110011234555443321 1 1231 1223467888
Q ss_pred ccCCCCC--cc----cCCCcEEEEeCCCCCCCccccCceeE----EEEecCCCeecccccccCCeeEEEEEeceEEEEEE
Q 018395 192 CEEAPLD--VD----IKNGGRVVLLNTKNLPLVGEVGCGAD----LVRLDGKAMCSPGFSCDSALQVTYIVRGSGRAQIV 261 (356)
Q Consensus 192 l~~~~~~--~~----~~~gG~~~~~~~~~~p~l~~l~~s~~----~v~l~~g~~~~PH~h~~~A~ei~~v~~G~~~~~iv 261 (356)
|..-.|. +. .+.--.+.++ +.+-|...- ++.. |-.-.+++++.|.+|.|-.+|+++.+.|.-...
T Consensus 275 l~~F~pi~svs~dH~dPSI~tvlta-ps~~pg~av--~dFviFpPRw~vae~TfrpPyyHrN~~sEfmgli~G~y~ak-- 349 (429)
T TIGR01015 275 LKRFNVINSVSFDHPDPSIFTVLTA-PSDRPGTAI--ADFVIFPPRWLVAEKTFRPPYYHRNCMSEFMGLITGAYDAK-- 349 (429)
T ss_pred hhheeeccccccccCCCCceEEEec-cCCCCCceE--EEEEeeCCcccCCCCccCCCCCccchhhhhhhhcccccccc--
Confidence 8754332 10 0111111111 112222211 1122 112348999999999997788888887753111
Q ss_pred ccCCceEEEEEecCCcEEEEcCCcEEE
Q 018395 262 GPDGKRVLETTVKAGNLFIVPRFYVVS 288 (356)
Q Consensus 262 ~~~g~~~~~~~l~~Gdv~vvP~g~~h~ 288 (356)
+..+.+|.+-.=|.+.+|=
T Consensus 350 --------~~gf~pGg~SlH~~~~pHG 368 (429)
T TIGR01015 350 --------EGGFVPGGGSLHNMMTPHG 368 (429)
T ss_pred --------cCCcCCCeeeecCCCCCCC
Confidence 1137889999999998874
No 104
>KOG2107 consensus Uncharacterized conserved protein, contains double-stranded beta-helix domain [Function unknown]
Probab=96.17 E-value=0.0084 Score=51.33 Aligned_cols=55 Identities=18% Similarity=0.323 Sum_probs=47.1
Q ss_pred CeecccccccCCeeEEEEEeceEEEEEEccCCceEEEEEecCCcEEEEcCCcEEEEee
Q 018395 234 AMCSPGFSCDSALQVTYIVRGSGRAQIVGPDGKRVLETTVKAGNLFIVPRFYVVSKIA 291 (356)
Q Consensus 234 ~~~~PH~h~~~A~ei~~v~~G~~~~~iv~~~g~~~~~~~l~~Gdv~vvP~g~~h~~~~ 291 (356)
.++++|-|.. .||-||+.|+|+.-+-+-++ +-+.--++.||++++|+|.-|-...
T Consensus 84 ~FfEEhlh~d--eeiR~il~GtgYfDVrd~dd-~WIRi~vekGDlivlPaGiyHRFTt 138 (179)
T KOG2107|consen 84 SFFEEHLHED--EEIRYILEGTGYFDVRDKDD-QWIRIFVEKGDLIVLPAGIYHRFTT 138 (179)
T ss_pred HHHHHhcCch--hheEEEeecceEEeeccCCC-CEEEEEEecCCEEEecCcceeeeec
Confidence 3689999997 59999999999999998885 4355679999999999999998744
No 105
>PF00908 dTDP_sugar_isom: dTDP-4-dehydrorhamnose 3,5-epimerase; InterPro: IPR000888 Deoxythymidine diphosphate (dTDP)-4-keto-6-deoxy-d-hexulose 3, 5-epimerase (RmlC, 5.1.3.13 from EC) is involved in the biosynthesis of dTDP-l-rhamnose, which is an essential component of the bacterial cell wall, converting dTDP-4-keto-6-deoxy-D-glucose to dTDP-4-keto-L-rhamnose. The crystal structure of RmlC from Methanobacterium thermoautotrophicum was determined in the presence and absence of a substrate analogue. RmlC is a homodimer comprising a central jelly roll motif, which extends in two directions into longer beta-sheets. Binding of dTDP is stabilised by ionic interactions to the phosphate group and by a combination of ionic and hydrophobic interactions with the base. The active site, which is located in the centre of the jelly roll, is formed by residues that are conserved in all known RmlC sequence homologues. The active site is lined with a number of charged residues and a number of residues with hydrogen-bonding potentials, which together comprise a potential network for substrate binding and catalysis. The active site is also lined with aromatic residues which provide favorable environments for the base moiety of dTDP and potentially for the sugar moiety of the substrate [].; GO: 0008830 dTDP-4-dehydrorhamnose 3,5-epimerase activity, 0009103 lipopolysaccharide biosynthetic process; PDB: 1EPZ_A 1EP0_A 1NXM_A 1NZC_D 2IXL_C 1NYW_B 2IXC_D 1PM7_B 1UPI_A 3RYK_B ....
Probab=96.17 E-value=0.038 Score=48.69 Aligned_cols=73 Identities=21% Similarity=0.154 Sum_probs=54.4
Q ss_pred EEecCCCcccCeee-CC---CEEEEEEeCeEEEEEEcC--C----CceEEEEEcCCC--EEEeCCCcEEEEEecCCCcEE
Q 018395 42 LALEKNGFALPHYC-DS---ARVAYVLQGSGVAGIVLP--E----KEEKVVAIKKGD--GIALPFGVVTWWYNKEDTELV 109 (356)
Q Consensus 42 ~~l~Pg~~~~pH~h-~a---~e~~yVl~G~~~~~vv~~--~----~~~~~~~l~~GD--v~~iP~G~~H~~~N~g~e~l~ 109 (356)
-.-.+|.++.+|+| .. ..++.|++|+....+++- + ++.....|.+++ .++||+|..|-..+.+++ ..
T Consensus 48 S~s~~gvlRGlH~q~~~~~q~Klv~~~~G~i~dV~vDlR~~SpTfg~~~~~~Ls~~n~~~l~IP~G~aHGf~~l~d~-a~ 126 (176)
T PF00908_consen 48 SVSKKGVLRGLHYQSPPYAQAKLVRCLRGEIFDVAVDLRKGSPTFGKWVSVELSAENPRQLYIPPGVAHGFQTLEDD-AE 126 (176)
T ss_dssp EEEETTBEEEEEEESTTT-EEEEEEEEESEEEEEEEE-BTTSTTTT-EEEEEEETTT--EEEE-TTEEEEEEESSSE-EE
T ss_pred EEccccEEEEEEEecCCCCCCcEEEEecCeEEEEEEECCCCCCCCCEEEEEEeCccccCEEEeCCcceeeEEeccCc-eE
Confidence 34455999999999 43 589999999999988872 2 455567887775 799999999999998776 55
Q ss_pred EEEEee
Q 018395 110 VLFLGD 115 (356)
Q Consensus 110 ~l~i~~ 115 (356)
+++..+
T Consensus 127 v~Y~~t 132 (176)
T PF00908_consen 127 VLYKVT 132 (176)
T ss_dssp EEEEES
T ss_pred EEEecC
Confidence 555443
No 106
>COG3450 Predicted enzyme of the cupin superfamily [General function prediction only]
Probab=96.15 E-value=0.013 Score=47.77 Aligned_cols=57 Identities=16% Similarity=0.219 Sum_probs=41.2
Q ss_pred eeEEEEecCCCeecccccccCCeeEEEEEeceEEEEEEccCCceEEEEEecCCcEEEEcCCcEEEE
Q 018395 224 GADLVRLDGKAMCSPGFSCDSALQVTYIVRGSGRAQIVGPDGKRVLETTVKAGNLFIVPRFYVVSK 289 (356)
Q Consensus 224 s~~~v~l~~g~~~~PH~h~~~A~ei~~v~~G~~~~~iv~~~g~~~~~~~l~~Gdv~vvP~g~~h~~ 289 (356)
.+..=.-+||-. +|+-. .+|.+++++|+++++ ..+|+. .++++||+++||+|+.-..
T Consensus 46 ~~GiWe~TpG~~---r~~y~-~~E~chil~G~v~~T--~d~Ge~---v~~~aGD~~~~~~G~~g~W 102 (116)
T COG3450 46 ETGIWECTPGKF---RVTYD-EDEFCHILEGRVEVT--PDGGEP---VEVRAGDSFVFPAGFKGTW 102 (116)
T ss_pred eEeEEEecCccc---eEEcc-cceEEEEEeeEEEEE--CCCCeE---EEEcCCCEEEECCCCeEEE
Confidence 344445577766 46666 789999999987554 434433 4799999999999997654
No 107
>PF00908 dTDP_sugar_isom: dTDP-4-dehydrorhamnose 3,5-epimerase; InterPro: IPR000888 Deoxythymidine diphosphate (dTDP)-4-keto-6-deoxy-d-hexulose 3, 5-epimerase (RmlC, 5.1.3.13 from EC) is involved in the biosynthesis of dTDP-l-rhamnose, which is an essential component of the bacterial cell wall, converting dTDP-4-keto-6-deoxy-D-glucose to dTDP-4-keto-L-rhamnose. The crystal structure of RmlC from Methanobacterium thermoautotrophicum was determined in the presence and absence of a substrate analogue. RmlC is a homodimer comprising a central jelly roll motif, which extends in two directions into longer beta-sheets. Binding of dTDP is stabilised by ionic interactions to the phosphate group and by a combination of ionic and hydrophobic interactions with the base. The active site, which is located in the centre of the jelly roll, is formed by residues that are conserved in all known RmlC sequence homologues. The active site is lined with a number of charged residues and a number of residues with hydrogen-bonding potentials, which together comprise a potential network for substrate binding and catalysis. The active site is also lined with aromatic residues which provide favorable environments for the base moiety of dTDP and potentially for the sugar moiety of the substrate [].; GO: 0008830 dTDP-4-dehydrorhamnose 3,5-epimerase activity, 0009103 lipopolysaccharide biosynthetic process; PDB: 1EPZ_A 1EP0_A 1NXM_A 1NZC_D 2IXL_C 1NYW_B 2IXC_D 1PM7_B 1UPI_A 3RYK_B ....
Probab=96.12 E-value=0.057 Score=47.59 Aligned_cols=71 Identities=10% Similarity=0.029 Sum_probs=53.8
Q ss_pred cCCCeecccccccCC---eeEEEEEeceEEEEEEccCC-----ceEEEEEecCCc--EEEEcCCcEEEEeeCCCCeEEEE
Q 018395 231 DGKAMCSPGFSCDSA---LQVTYIVRGSGRAQIVGPDG-----KRVLETTVKAGN--LFIVPRFYVVSKIADPDGLAWFS 300 (356)
Q Consensus 231 ~~g~~~~PH~h~~~A---~ei~~v~~G~~~~~iv~~~g-----~~~~~~~l~~Gd--v~vvP~g~~h~~~~~~~~~~~~~ 300 (356)
.+|.++.+|+|.. - .+++.|++|++..-++|-.- .+.....|.+++ .++||+|++|-..+-.+++.++-
T Consensus 51 ~~gvlRGlH~q~~-~~~q~Klv~~~~G~i~dV~vDlR~~SpTfg~~~~~~Ls~~n~~~l~IP~G~aHGf~~l~d~a~v~Y 129 (176)
T PF00908_consen 51 KKGVLRGLHYQSP-PYAQAKLVRCLRGEIFDVAVDLRKGSPTFGKWVSVELSAENPRQLYIPPGVAHGFQTLEDDAEVLY 129 (176)
T ss_dssp ETTBEEEEEEEST-TT-EEEEEEEEESEEEEEEEE-BTTSTTTT-EEEEEEETTT--EEEE-TTEEEEEEESSSEEEEEE
T ss_pred cccEEEEEEEecC-CCCCCcEEEEecCeEEEEEEECCCCCCCCCEEEEEEeCccccCEEEeCCcceeeEEeccCceEEEE
Confidence 4599999999987 4 68999999999999999542 234556787775 79999999999987666666555
Q ss_pred EE
Q 018395 301 II 302 (356)
Q Consensus 301 ~~ 302 (356)
..
T Consensus 130 ~~ 131 (176)
T PF00908_consen 130 KV 131 (176)
T ss_dssp EE
T ss_pred ec
Confidence 44
No 108
>TIGR01221 rmlC dTDP-4-dehydrorhamnose 3,5-epimerase. This enzyme participates in the biosynthesis of dTDP-L-rhamnose, often as a precursor to LPS O-antigen
Probab=95.99 E-value=0.11 Score=45.74 Aligned_cols=71 Identities=8% Similarity=0.059 Sum_probs=53.6
Q ss_pred cCCCeeccccccc-CCeeEEEEEeceEEEEEEccCCc-----eEEEEEecC--CcEEEEcCCcEEEEeeCCCCeEEEEE
Q 018395 231 DGKAMCSPGFSCD-SALQVTYIVRGSGRAQIVGPDGK-----RVLETTVKA--GNLFIVPRFYVVSKIADPDGLAWFSI 301 (356)
Q Consensus 231 ~~g~~~~PH~h~~-~A~ei~~v~~G~~~~~iv~~~g~-----~~~~~~l~~--Gdv~vvP~g~~h~~~~~~~~~~~~~~ 301 (356)
.+|.++.+|+|.. .-.+++.|++|+...-+||..-. +.....|.+ +..++||+|++|-..+-.+++.++-.
T Consensus 52 ~~gvlRGlH~q~~~~q~Klv~c~~G~i~dV~VDlR~~SpTfG~~~~~~L~~~~~~~l~IP~G~aHGF~~L~d~a~v~Y~ 130 (176)
T TIGR01221 52 YKGVLRGLHYQRPHPQGKLVRVLRGEVFDVAVDLRRNSPTFGKWVGVLLSAENKRQLWIPEGFAHGFVVLSDEAEFLYK 130 (176)
T ss_pred cCCEEEEEEECCCCCCceEEEEccCCEEEEEEECCCCcCCCCeEEEEEECCCCCCEEEeCCcceeEEEEcCCCeEEEEe
Confidence 6799999999831 13689999999999999997532 233446766 66999999999998775555555544
No 109
>PF08007 Cupin_4: Cupin superfamily protein; InterPro: IPR022777 This signature represents primarily the cupin fold found in JmjC transcription factors. The fold is also found in lysine-specific demethylase NO66.; PDB: 2XDV_A 1VRB_B 4DIQ_B.
Probab=95.88 E-value=0.047 Score=52.66 Aligned_cols=73 Identities=15% Similarity=0.196 Sum_probs=47.6
Q ss_pred eeEEEEecCCC--eecccccccCCeeEEEEEeceEEEEEEccCC-----------------ceEEEEEecCCcEEEEcCC
Q 018395 224 GADLVRLDGKA--MCSPGFSCDSALQVTYIVRGSGRAQIVGPDG-----------------KRVLETTVKAGNLFIVPRF 284 (356)
Q Consensus 224 s~~~v~l~~g~--~~~PH~h~~~A~ei~~v~~G~~~~~iv~~~g-----------------~~~~~~~l~~Gdv~vvP~g 284 (356)
..+.+.+.|+| =+.|||-.. .-+++=+.|+=+..+..+.. ....+..|+||||+|+|+|
T Consensus 114 ~~~n~Y~tp~g~~g~~~H~D~~--dvfvlQ~~G~K~W~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~pGD~LYlPrG 191 (319)
T PF08007_consen 114 VGANAYLTPPGSQGFGPHYDDH--DVFVLQLEGRKRWRLYPPPDEPAPLYSDQPFKQLEEFEPVEEVVLEPGDVLYLPRG 191 (319)
T ss_dssp EEEEEEEETSSBEESECEE-SS--EEEEEEEES-EEEEEE-SCCCTTTSSCE--TTTCG--STSEEEEE-TT-EEEE-TT
T ss_pred cceEEEecCCCCCCccCEECCc--ccEEEECCceeEEEECCCCcccccccCCCCccccccCceeEEEEECCCCEEEECCC
Confidence 45677899998 778999653 45666678988999988421 1245679999999999999
Q ss_pred cEEEEeeCCCCeEE
Q 018395 285 YVVSKIADPDGLAW 298 (356)
Q Consensus 285 ~~h~~~~~~~~~~~ 298 (356)
++|.-.+....+.+
T Consensus 192 ~~H~~~~~~~S~hl 205 (319)
T PF08007_consen 192 WWHQAVTTDPSLHL 205 (319)
T ss_dssp -EEEEEESS-EEEE
T ss_pred ccCCCCCCCCceEE
Confidence 99998765544443
No 110
>COG3257 GlxB Uncharacterized protein, possibly involved in glyoxylate utilization [General function prediction only]
Probab=95.82 E-value=0.07 Score=47.93 Aligned_cols=85 Identities=19% Similarity=0.156 Sum_probs=65.7
Q ss_pred EEeCCCCCCCcccCceEEEEEEecCCCcccCe-eeCCCEEEEEEeCeEEEEEEcCCCceEEEEEcCCCEEEeCCCcEEEE
Q 018395 22 HAWCPNELPMLRQGNIGAAKLALEKNGFALPH-YCDSARVAYVLQGSGVAGIVLPEKEEKVVAIKKGDGIALPFGVVTWW 100 (356)
Q Consensus 22 ~~~~~~~~p~l~~~~~~~~~~~l~Pg~~~~pH-~h~a~e~~yVl~G~~~~~vv~~~~~~~~~~l~~GDv~~iP~G~~H~~ 100 (356)
..+++++ -..+|.+..++++||+.++-- .|-.+.=+|||+|++...+ + ... .++++||.+.+-+-.+.++
T Consensus 171 ttv~P~d----~r~Dmhv~ivsFePGa~ip~aEtHvmEHGlyvLeGk~vYrL---n-~dw-v~V~aGD~mwm~A~cpQac 241 (264)
T COG3257 171 TTVLPKE----LRFDMHVHIVSFEPGASIPYAETHVMEHGLYVLEGKGVYRL---N-NNW-VPVEAGDYIWMGAYCPQAC 241 (264)
T ss_pred EeeCccc----cCcceEEEEEEecCCcccchhhhhhhhcceEEEecceEEee---c-Cce-EEeecccEEEeeccChhhh
Confidence 4455543 235789999999999987533 4556677999999999876 2 122 7999999999999999999
Q ss_pred EecCCCcEEEEEEee
Q 018395 101 YNKEDTELVVLFLGD 115 (356)
Q Consensus 101 ~N~g~e~l~~l~i~~ 115 (356)
+..|...++.|.--|
T Consensus 242 yagG~g~frYLlyKD 256 (264)
T COG3257 242 YAGGRGAFRYLLYKD 256 (264)
T ss_pred ccCCCCceEEEEEec
Confidence 999888888876433
No 111
>PF04962 KduI: KduI/IolB family; InterPro: IPR021120 The KduI/IolB family of enzymes includes 5-keto 4-deoxyuronate isomerase (KduI) and 5-deoxy-glucuronate isomerase (IolB). KduI is involved in pectin degradation by free-living soil bacteria that use pectin as a carbon source, breaking it down to 2-keto-3-deoxygluconate, which can ultimately be converted to pyruvate. KduI catalyses the fourth step in pectin degradation, namely the interconversion of 5-keto-4-deoxyuronate and 2,5-diketo-3-dexoygluconate []. KduI has a TIM-barrel fold []. IolB is one of several bacterial proteins encoded by the inositol operon (iolABCDEFGHIJ) in Bacillus subtilis that are involved in myo-inositol catabolism. The enzyme is responsible for isomerization of 5-deoxy-D-glucuronic acid by IolB to produce 2-deoxy-5-keto-D-gluconic acid []. IolBs possess a cupin-like structure.; GO: 0016861 intramolecular oxidoreductase activity, interconverting aldoses and ketoses, 0008152 metabolic process; PDB: 1YWK_B 2QJV_B 1X8M_A 1XRU_A.
Probab=95.77 E-value=1.7 Score=40.68 Aligned_cols=87 Identities=14% Similarity=0.080 Sum_probs=55.3
Q ss_pred EEEEeCCCCCCCcccCceEEEEEEecCCCcccCeeeCCCEEEEEEeCeEEEEEEcCCCceEEEEEcCC--------CEEE
Q 018395 20 SYHAWCPNELPMLRQGNIGAAKLALEKNGFALPHYCDSARVAYVLQGSGVAGIVLPEKEEKVVAIKKG--------DGIA 91 (356)
Q Consensus 20 ~i~~~~~~~~p~l~~~~~~~~~~~l~Pg~~~~pH~h~a~e~~yVl~G~~~~~vv~~~~~~~~~~l~~G--------Dv~~ 91 (356)
.+...+.... ...-+.+..++|++|.....-.-+-+-.++.|+|++++.+ ++. ..+++..- |++|
T Consensus 13 ~~~~i~~~~~---g~~~~~~~~l~L~~g~~~~~~~~~~E~~vv~l~G~~~v~~---~g~-~~~~l~~R~~vF~~~~d~lY 85 (261)
T PF04962_consen 13 LVYSITPENA---GWMYMGFGVLRLEAGESLEFELERRELGVVNLGGKATVTV---DGE-EFYELGGRESVFDGPPDALY 85 (261)
T ss_dssp -EEECTCCCC---CCCCBECCCEEEECCHCCCCCCCSEEEEEEEESSSEEEEE---TTE-EEEEE-TTSSGGGS--EEEE
T ss_pred EEEEECCCcc---CccccceEEEEecCCCEEeccCCCcEEEEEEeCCEEEEEe---CCc-eEEEecccccccCCCCcEEE
Confidence 3555554332 3344566789999988775553356666778899999987 332 33677776 9999
Q ss_pred eCCCcEEEEEecCCCcEEEEEEee
Q 018395 92 LPFGVVTWWYNKEDTELVVLFLGD 115 (356)
Q Consensus 92 iP~G~~H~~~N~g~e~l~~l~i~~ 115 (356)
+|.|..-.+.+.++ +++.....
T Consensus 86 vp~g~~~~i~a~~~--ae~~~~sa 107 (261)
T PF04962_consen 86 VPRGTKVVIFASTD--AEFAVCSA 107 (261)
T ss_dssp E-TT--EEEEESST--EEEEEEEE
T ss_pred eCCCCeEEEEEcCC--CEEEEEcc
Confidence 99999988888544 55654433
No 112
>PRK13503 transcriptional activator RhaS; Provisional
Probab=95.73 E-value=0.024 Score=52.96 Aligned_cols=54 Identities=13% Similarity=0.051 Sum_probs=42.7
Q ss_pred cCCCeecccccccCCeeEEEEEeceEEEEEEccCCceEEEEEecCCcEEEEcCCcEEEEeeC
Q 018395 231 DGKAMCSPGFSCDSALQVTYIVRGSGRAQIVGPDGKRVLETTVKAGNLFIVPRFYVVSKIAD 292 (356)
Q Consensus 231 ~~g~~~~PH~h~~~A~ei~~v~~G~~~~~iv~~~g~~~~~~~l~~Gdv~vvP~g~~h~~~~~ 292 (356)
.+.....+|||. ..|++||++|++...+=+. ...+++||++++|++-.|.....
T Consensus 23 ~~~~~~~~H~H~--~~ei~~v~~G~~~~~i~~~------~~~l~~g~~~~i~~~~~h~~~~~ 76 (278)
T PRK13503 23 LPQAAFPEHHHD--FHEIVIVEHGTGIHVFNGQ------PYTLSGGTVCFVRDHDRHLYEHT 76 (278)
T ss_pred CccccccccccC--ceeEEEEecCceeeEecCC------cccccCCcEEEECCCccchhhhc
Confidence 344556889995 6899999999998776542 25799999999999999976443
No 113
>PF08007 Cupin_4: Cupin superfamily protein; InterPro: IPR022777 This signature represents primarily the cupin fold found in JmjC transcription factors. The fold is also found in lysine-specific demethylase NO66.; PDB: 2XDV_A 1VRB_B 4DIQ_B.
Probab=95.46 E-value=0.18 Score=48.74 Aligned_cols=66 Identities=24% Similarity=0.233 Sum_probs=45.0
Q ss_pred EEEEEecCCC--cccCeeeCCCEEEEEEeCeEEEEEEcCCC------------------ceEEEEEcCCCEEEeCCCcEE
Q 018395 39 AAKLALEKNG--FALPHYCDSARVAYVLQGSGVAGIVLPEK------------------EEKVVAIKKGDGIALPFGVVT 98 (356)
Q Consensus 39 ~~~~~l~Pg~--~~~pH~h~a~e~~yVl~G~~~~~vv~~~~------------------~~~~~~l~~GDv~~iP~G~~H 98 (356)
..-+.+.|++ -+.|||-+.+-+++=+.|+=+..+..+.. ......|++||++|+|+|++|
T Consensus 115 ~~n~Y~tp~g~~g~~~H~D~~dvfvlQ~~G~K~W~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~pGD~LYlPrG~~H 194 (319)
T PF08007_consen 115 GANAYLTPPGSQGFGPHYDDHDVFVLQLEGRKRWRLYPPPDEPAPLYSDQPFKQLEEFEPVEEVVLEPGDVLYLPRGWWH 194 (319)
T ss_dssp EEEEEEETSSBEESECEE-SSEEEEEEEES-EEEEEE-SCCCTTTSSCE--TTTCG--STSEEEEE-TT-EEEE-TT-EE
T ss_pred ceEEEecCCCCCCccCEECCcccEEEECCceeEEEECCCCcccccccCCCCccccccCceeEEEEECCCCEEEECCCccC
Confidence 3456677877 77888877777777788998888876311 123589999999999999999
Q ss_pred EEEecC
Q 018395 99 WWYNKE 104 (356)
Q Consensus 99 ~~~N~g 104 (356)
.....+
T Consensus 195 ~~~~~~ 200 (319)
T PF08007_consen 195 QAVTTD 200 (319)
T ss_dssp EEEESS
T ss_pred CCCCCC
Confidence 999987
No 114
>PF05995 CDO_I: Cysteine dioxygenase type I; InterPro: IPR010300 Cysteine dioxygenase type I (1.13.11.20 from EC) converts cysteine to cysteinesulphinic acid and is the rate-limiting step in sulphate production.; GO: 0005506 iron ion binding, 0017172 cysteine dioxygenase activity, 0046439 L-cysteine metabolic process, 0055114 oxidation-reduction process; PDB: 2IC1_A 3EQE_B 3ELN_A 2B5H_A 2GH2_A 2Q4S_A 2ATF_A 2GM6_A 3USS_B.
Probab=95.32 E-value=0.31 Score=42.81 Aligned_cols=77 Identities=14% Similarity=-0.056 Sum_probs=53.7
Q ss_pred CceEEEEEEecCCCcccCeee-CCCEEEEEEeCeEEEEEEcCCCc--------eEEEEEcCCCEEEeCCCcEEEEEecC-
Q 018395 35 GNIGAAKLALEKNGFALPHYC-DSARVAYVLQGSGVAGIVLPEKE--------EKVVAIKKGDGIALPFGVVTWWYNKE- 104 (356)
Q Consensus 35 ~~~~~~~~~l~Pg~~~~pH~h-~a~e~~yVl~G~~~~~vv~~~~~--------~~~~~l~~GDv~~iP~G~~H~~~N~g- 104 (356)
..+.+..+.-.||...+.|=| .+..++.|++|+.+-........ .....+..|.++.++.+..|.+.|.+
T Consensus 73 ~~~el~ll~W~pGq~S~IHDH~~s~g~~~vl~G~l~e~~y~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~iH~v~n~s~ 152 (175)
T PF05995_consen 73 ERFELWLLCWPPGQRSPIHDHGGSWGWVKVLSGELEETRYRRPDDGGAPLELVGRERLLPGGVTYIFDPHGIHRVENPSG 152 (175)
T ss_dssp CT-EEEEEEE-TT-B--EEE-TTSEEEEEEEESEEEEEEEEESTSSS-EEEECEEEEEETTTEEEEBTTTBEEEEEES-S
T ss_pred CCeEEEEEEeCCCCcCCCCCCCCceEEEEEecceEEEEEeccCCcccCcccccCceEecCCCeEEecCCCCeEEeccCCC
Confidence 468889999999999999999 68889999999988877654322 12245678888888999999999876
Q ss_pred CCcEEEE
Q 018395 105 DTELVVL 111 (356)
Q Consensus 105 ~e~l~~l 111 (356)
+++..-|
T Consensus 153 ~~~avSL 159 (175)
T PF05995_consen 153 DEPAVSL 159 (175)
T ss_dssp SS-EEEE
T ss_pred CCCEEEE
Confidence 6654443
No 115
>COG4766 EutQ Ethanolamine utilization protein [Amino acid transport and metabolism]
Probab=94.95 E-value=0.18 Score=42.75 Aligned_cols=68 Identities=16% Similarity=0.364 Sum_probs=47.7
Q ss_pred ceeEEEEecCCCeecccccccCCeeEEEEEeceEEEEEEccCCceEEEEEecCCcEEEEcCCcEEEEeeCCCCeEEEEE
Q 018395 223 CGADLVRLDGKAMCSPGFSCDSALQVTYIVRGSGRAQIVGPDGKRVLETTVKAGNLFIVPRFYVVSKIADPDGLAWFSI 301 (356)
Q Consensus 223 ~s~~~v~l~~g~~~~PH~h~~~A~ei~~v~~G~~~~~iv~~~g~~~~~~~l~~Gdv~vvP~g~~h~~~~~~~~~~~~~~ 301 (356)
+++...+.++ ..+ -|-.+ -+|+-||++|+..|.+-+ +.+ .-.+|||++||+|.-.-+-...+ +.|+-+
T Consensus 100 l~aG~m~~~~-~tf--~wtl~-yDe~d~VlEGrL~V~~~g---~tv---~a~aGDvifiPKgssIefst~ge-a~flyv 167 (176)
T COG4766 100 LGAGLMEMKN-TTF--PWTLN-YDEIDYVLEGRLHVRIDG---RTV---IAGAGDVIFIPKGSSIEFSTTGE-AKFLYV 167 (176)
T ss_pred cccceeeecc-ccC--cceec-ccceeEEEeeeEEEEEcC---CeE---ecCCCcEEEecCCCeEEEeccce-EEEEEE
Confidence 6677778887 332 46666 889999999999877644 333 36799999999998766533233 555544
No 116
>PLN02288 mannose-6-phosphate isomerase
Probab=94.75 E-value=0.45 Score=47.22 Aligned_cols=57 Identities=19% Similarity=0.200 Sum_probs=37.7
Q ss_pred ceeEEEEecCCCeecccccccCCeeEEEEEeceEEEEEEccCCceEEEEEecCCcEEEEcCCc
Q 018395 223 CGADLVRLDGKAMCSPGFSCDSALQVTYIVRGSGRAQIVGPDGKRVLETTVKAGNLFIVPRFY 285 (356)
Q Consensus 223 ~s~~~v~l~~g~~~~PH~h~~~A~ei~~v~~G~~~~~iv~~~g~~~~~~~l~~Gdv~vvP~g~ 285 (356)
.++.++++.++.-.. ..-.. ..+|++|++|++++.. ..+.. ...|++|++++||++.
T Consensus 334 F~v~~~~l~~~~~~~-~~~~~-gp~Illv~~G~~~i~~--~~~~~--~~~l~~G~~~fv~a~~ 390 (394)
T PLN02288 334 FEVDHCDVPPGASVV-FPAVP-GPSVFLVIEGEGVLST--GSSED--GTAAKRGDVFFVPAGT 390 (394)
T ss_pred eEEEEEEeCCCCeEe-ecCCC-CCEEEEEEcCEEEEec--CCccc--eEEEeceeEEEEeCCC
Confidence 557777787765322 11123 5689999999998742 22211 2469999999999874
No 117
>PF12852 Cupin_6: Cupin
Probab=94.66 E-value=0.13 Score=45.38 Aligned_cols=46 Identities=24% Similarity=0.286 Sum_probs=36.4
Q ss_pred CCEEEEEEeCeEEEEEEcCCCceEEEEEcCCCEEEeCCCcEEEEEecCC
Q 018395 57 SARVAYVLQGSGVAGIVLPEKEEKVVAIKKGDGIALPFGVVTWWYNKED 105 (356)
Q Consensus 57 a~e~~yVl~G~~~~~vv~~~~~~~~~~l~~GDv~~iP~G~~H~~~N~g~ 105 (356)
...+.+|++|++.+.+ . ++. ....|++||++++|.|..|++....+
T Consensus 35 ~~~fh~V~~G~~~l~~-~-~~~-~~~~L~~GDivllp~g~~H~l~~~~~ 80 (186)
T PF12852_consen 35 GASFHVVLRGSCWLRV-P-GGG-EPIRLEAGDIVLLPRGTAHVLSSDPD 80 (186)
T ss_pred ceEEEEEECCeEEEEE-c-CCC-CeEEecCCCEEEEcCCCCeEeCCCCC
Confidence 3678889999999985 2 212 34899999999999999999966443
No 118
>PRK00924 5-keto-4-deoxyuronate isomerase; Provisional
Probab=94.62 E-value=4.1 Score=38.41 Aligned_cols=68 Identities=12% Similarity=0.154 Sum_probs=45.4
Q ss_pred EEEecCCCcccCeee-CCCEE-EEEEeCeEEEEEEcCCCceEEEEEcCCCEEEeCCCcEEEEEec--CCCcEEEEEE
Q 018395 41 KLALEKNGFALPHYC-DSARV-AYVLQGSGVAGIVLPEKEEKVVAIKKGDGIALPFGVVTWWYNK--EDTELVVLFL 113 (356)
Q Consensus 41 ~~~l~Pg~~~~pH~h-~a~e~-~yVl~G~~~~~vv~~~~~~~~~~l~~GDv~~iP~G~~H~~~N~--g~e~l~~l~i 113 (356)
.+.|+.+....-.+. ...|+ ++.+.|++.+.+ ++ .++.|.+.|.+|+|.|...+.... ...+++|...
T Consensus 56 ~l~l~~~~~~~~~~fl~rrE~giV~lgG~~~V~v---dG--~~~~l~~~d~LYVp~G~~~v~~as~~a~~paef~i~ 127 (276)
T PRK00924 56 PLKLEAGKQLGVSYFLERRELGIINIGGAGTVTV---DG--ETYELGHRDALYVGKGAKEVVFASADAANPAKFYLN 127 (276)
T ss_pred ceecccCccccceeecCCcEEEEEEccceEEEEE---CC--EEEecCCCcEEEECCCCcEEEEEecCCCCCcEEEEE
Confidence 355555555555555 66665 557889999986 33 347899999999999988766642 2345666543
No 119
>PF06172 Cupin_5: Cupin superfamily (DUF985); InterPro: IPR009327 This is a family of uncharacterised proteins found in bacteria and eukaryotes.; PDB: 1ZNP_G 1XE8_B 1XE7_A 3M3I_F 3LOI_A 3LZZ_B 1YUD_D.
Probab=94.55 E-value=0.82 Score=38.66 Aligned_cols=97 Identities=13% Similarity=0.137 Sum_probs=63.3
Q ss_pred CCeEEEEeCCCCCCCc------ccCceEEEEEEecCCCcccCeeeCCCEEEEEEeC-eEEEEEEcCCCceEEEEEc----
Q 018395 17 NGGSYHAWCPNELPML------RQGNIGAAKLALEKNGFALPHYCDSARVAYVLQG-SGVAGIVLPEKEEKVVAIK---- 85 (356)
Q Consensus 17 ~~G~i~~~~~~~~p~l------~~~~~~~~~~~l~Pg~~~~pH~h~a~e~~yVl~G-~~~~~vv~~~~~~~~~~l~---- 85 (356)
+||++++......... ....++....-|.++.....|-.+++|+.+-..| ..++-++.+++......|.
T Consensus 15 EGG~fret~rs~~~~~~~~~~~~R~~~T~Iy~LL~~~~~S~~Hrv~sdEiw~~~~G~pl~l~~i~~dg~~~~~~LG~d~~ 94 (139)
T PF06172_consen 15 EGGYFRETYRSPETVSPPSLGPSRSASTSIYYLLTPGEFSAWHRVDSDEIWHFHAGDPLELHLIDPDGSYETVVLGPDLA 94 (139)
T ss_dssp TSSEEEEEEE-SSEEECCTCSSCEES-EEEEEEEETTBEEEEEEESSEEEEEEEEES-EEEEEECTTSTEEEEEESSTTC
T ss_pred CCccEEEEEECCCcccCCCCCCCcccceEEEEEEcCCCCCccEEcCCCEEEEEEcCCCEEEEEEcCCCCeEEEEECCCCC
Confidence 7898876432211110 1234667778899988777777789998888888 5888888898876655563
Q ss_pred CC--CEEEeCCCcEEEEEecCCCcEEEEEE
Q 018395 86 KG--DGIALPFGVVTWWYNKEDTELVVLFL 113 (356)
Q Consensus 86 ~G--Dv~~iP~G~~H~~~N~g~e~l~~l~i 113 (356)
+| =.++||+|+.....-.+...-.++..
T Consensus 95 ~g~~~q~vVp~G~W~aa~l~~~~~y~Lvsc 124 (139)
T PF06172_consen 95 AGERPQVVVPAGTWQAAELEPEGDYSLVSC 124 (139)
T ss_dssp TTEBSEEEE-TTSEEEEEECESSSEEEEEE
T ss_pred CCceEEEEECCCEEEEccccCCCCEEEEEE
Confidence 34 36899999988775444444555543
No 120
>KOG3706 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.40 E-value=0.025 Score=56.17 Aligned_cols=86 Identities=22% Similarity=0.287 Sum_probs=63.1
Q ss_pred CCCcEEEEeCCCCCCC--------cccc--CceeEEEEecCCCe--ecccccccCCeeEEEEEeceEEEEEEccC-----
Q 018395 202 KNGGRVVLLNTKNLPL--------VGEV--GCGADLVRLDGKAM--CSPGFSCDSALQVTYIVRGSGRAQIVGPD----- 264 (356)
Q Consensus 202 ~~gG~~~~~~~~~~p~--------l~~l--~~s~~~v~l~~g~~--~~PH~h~~~A~ei~~v~~G~~~~~iv~~~----- 264 (356)
..|.++..++++.|-. |+.. -+-.+.+.|+|-+- ++|||- + -.-.+.=++|+=+..+..|.
T Consensus 285 q~~cSiqllnPqty~drlwq~cevlqeqFgc~vGaNvYLTPagSqGfaPHyD-d-IeaFvlQvEGrK~Wrly~P~~~~ee 362 (629)
T KOG3706|consen 285 QKGCSIQLLNPQTYKDRLWQICEVLQEQFGCLVGANVYLTPAGSQGFAPHYD-D-IEAFVLQVEGRKHWRLYHPTVPLEE 362 (629)
T ss_pred hcCceEEeeCchhHHHHHHHHHHHHHHHhccccccceeecCCCCCCCCCchh-h-hhhhhheeccceeeEeecCCCcHhh
Confidence 5588888888887754 1111 24456788887544 489995 2 44466678899999998885
Q ss_pred --------------CceEEEEEecCCcEEEEcCCcEEEE
Q 018395 265 --------------GKRVLETTVKAGNLFIVPRFYVVSK 289 (356)
Q Consensus 265 --------------g~~~~~~~l~~Gdv~vvP~g~~h~~ 289 (356)
|+-+++..|++||++|||+|++|--
T Consensus 363 l~l~sS~Nf~eedlgePV~e~vle~GDllYfPRG~IHQA 401 (629)
T KOG3706|consen 363 LALVSSDNFTEEDLGEPVHEFVLEPGDLLYFPRGTIHQA 401 (629)
T ss_pred hhhccCCCCChhHhCCchHHhhcCCCcEEEecCcceeec
Confidence 2347778899999999999999974
No 121
>PF13759 2OG-FeII_Oxy_5: Putative 2OG-Fe(II) oxygenase; PDB: 3BVC_B 2RG4_A.
Probab=94.21 E-value=0.33 Score=38.36 Aligned_cols=62 Identities=21% Similarity=0.254 Sum_probs=35.0
Q ss_pred EecCCCeecccccccCCeeEEEEE---eceEEEEEEccCCc-----------------eEEEEEecCCcEEEEcCCcEEE
Q 018395 229 RLDGKAMCSPGFSCDSALQVTYIV---RGSGRAQIVGPDGK-----------------RVLETTVKAGNLFIVPRFYVVS 288 (356)
Q Consensus 229 ~l~~g~~~~PH~h~~~A~ei~~v~---~G~~~~~iv~~~g~-----------------~~~~~~l~~Gdv~vvP~g~~h~ 288 (356)
..++|+...+|.|+++--.-+|-+ ++.+.+.+.++++. ..+.-+.++||+++||.-+.|.
T Consensus 6 i~~~g~~~~~H~H~~s~~SgVyYv~~p~~~~~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~G~lvlFPs~l~H~ 85 (101)
T PF13759_consen 6 IYRKGGYNEPHNHPNSWLSGVYYVQVPEGSGPLRFHDPRGSFSFGAPFDNYDQNDLNSPYYIVEPEEGDLVLFPSWLWHG 85 (101)
T ss_dssp EE-TT--EEEE--TT-SEEEEEECE--TTS-SEEEE-TTCCCGTTS----TTTTCCC-SEEEE---TTEEEEEETTSEEE
T ss_pred EeCCCCccCceECCCcCEEEEEEEECCCCCCceeeeCCCccceecccccccccCcccCceEEeCCCCCEEEEeCCCCEEe
Confidence 457899999999998332344444 24566777777431 1334478899999999999999
Q ss_pred Ee
Q 018395 289 KI 290 (356)
Q Consensus 289 ~~ 290 (356)
..
T Consensus 86 v~ 87 (101)
T PF13759_consen 86 VP 87 (101)
T ss_dssp E-
T ss_pred cc
Confidence 83
No 122
>PF05726 Pirin_C: Pirin C-terminal cupin domain; InterPro: IPR008778 This entry represents C-terminal domain of Pirin proteins from both eukaryotes and prokaryotes. The function of Pirin is unknown but the gene coding for this protein is known to be expressed in all tissues in the human body although it is expressed most strongly in the liver and heart. Pirin is known to be a nuclear protein, exclusively localised within the nucleoplasma and predominantly concentrated within dot-like subnuclear structures []. Pirin is composed of two structurally similar domains arranged face to face. The N-terminal domain additionally features four beta-strands, and the C-terminal domain also includes four additional -strands and a short alpha-helix. Although the two domains are similar, the C-terminal domain of Pirin differs from the N-terminal domain as it does not contain a metal binding site and its sequence does not contain the conserved metal-coordinating residues []. Pirin is confirmed to be a member of the cupin superfamily on the basis of primary sequence and structural similarity. The presence of a metal binding site in the N-terminal beta-barrel of Pirin, may be significant in its role in regulating NFI DNA replication and NF-kappaB transcription factor activity []. Pirin structure has been found to closely resemble members of the cupin superfamily. Pirin contains the two characteristic sequences of the cupin superfamily, namely PG-(X)5-HXH-(X)4-E-(X)6-G and G-(X)5-PXG-(X)2-H-(X)3-N separated by a variable stretch of 15-50 amino acids. These motifs are best conserved in the N-terminal where the conserved histidine and glutamic acid residues correspond to the metal-coordinating residues. The C-terminal domain motifs lack the metal binding residues normally associated with the cupin fold []. Pirin was identified to be a metal-binding protein [], and was found that the metal-binding residues of Pirins are highly conserved across mammals, plants, fungi, and prokaryotic organisms. Pirin acts as a cofactor for the transcription factor NFI, the regulatory mechanism of which is generally believed to require the assistance of a metal ion []. Structural data supports the hypothesis that the bound iron of Pirin may participate in this transcriptional regulation by enhancing and stabilising the formation of the p50,Bcl3,DNA complex []. Metals have been implicated directly or indirectly in the NF-kappaB family of transcription factors that control expression of a number of early response genes associated with inflammatory responses, cell growth, cell cycle progression, and neoplastic transformation []. However, most metal-dependent transcription factors are DNA-binding proteins that bind to specific sequences when the metal binds to the protein. Pirin, on the other hand, appears to function differently and bind to the transcription factor DNA complex [].; PDB: 1J1L_A 3ACL_A 2P17_A.
Probab=94.19 E-value=0.48 Score=37.80 Aligned_cols=67 Identities=25% Similarity=0.219 Sum_probs=47.2
Q ss_pred EEEEecCCCcccCeee-CCCEEEEEEeCeEEEEEEcCCCceEEEEEcCCCEEEeCCCcEEEEEecCCCcEEEEEEe
Q 018395 40 AKLALEKNGFALPHYC-DSARVAYVLQGSGVAGIVLPEKEEKVVAIKKGDGIALPFGVVTWWYNKEDTELVVLFLG 114 (356)
Q Consensus 40 ~~~~l~Pg~~~~pH~h-~a~e~~yVl~G~~~~~vv~~~~~~~~~~l~~GDv~~iP~G~~H~~~N~g~e~l~~l~i~ 114 (356)
..++|+||+....... .-+-++||++|++.+. +.. ..+.+|+.+++..|..-.+.+.+ ++++++.+.
T Consensus 2 ~di~l~~g~~~~~~~~~~~~~~iyv~~G~~~v~-----~~~--~~~~~~~~~~l~~g~~i~~~a~~-~~a~~lll~ 69 (104)
T PF05726_consen 2 LDIKLEPGASFTLPLPPGHNAFIYVLEGSVEVG-----GEE--DPLEAGQLVVLEDGDEIELTAGE-EGARFLLLG 69 (104)
T ss_dssp EEEEE-TT-EEEEEEETT-EEEEEEEESEEEET-----TTT--EEEETTEEEEE-SECEEEEEESS-SSEEEEEEE
T ss_pred EEEEECCCCEEEeecCCCCEEEEEEEECcEEEC-----CCc--ceECCCcEEEECCCceEEEEECC-CCcEEEEEE
Confidence 4688999998765544 6678999999998762 222 57999999999988877777764 557777654
No 123
>COG1482 ManA Phosphomannose isomerase [Carbohydrate transport and metabolism]
Probab=93.97 E-value=1.7 Score=41.63 Aligned_cols=60 Identities=15% Similarity=0.233 Sum_probs=39.6
Q ss_pred ceeEEEEecC-CCeecccccccCCeeEEEEEeceEEEEEEccCCceEEEEEecCCcEEEEcCCcEEEEeeCC
Q 018395 223 CGADLVRLDG-KAMCSPGFSCDSALQVTYIVRGSGRAQIVGPDGKRVLETTVKAGNLFIVPRFYVVSKIADP 293 (356)
Q Consensus 223 ~s~~~v~l~~-g~~~~PH~h~~~A~ei~~v~~G~~~~~iv~~~g~~~~~~~l~~Gdv~vvP~g~~h~~~~~~ 293 (356)
.++.+.++.. ..+... . ...|++|++|++.+..= |++ ..|++|+.+++|+...-+.+-|.
T Consensus 242 F~l~~~~i~~~~~~~~~----~-~~~il~v~eG~~~l~~~---~~~---~~l~~G~s~~ipa~~~~~~i~g~ 302 (312)
T COG1482 242 FALYKWDISGTAEFIKQ----E-SFSILLVLEGEGTLIGG---GQT---LKLKKGESFFIPANDGPYTIEGE 302 (312)
T ss_pred eEEEEEeccChhhhccC----C-CcEEEEEEcCeEEEecC---CEE---EEEcCCcEEEEEcCCCcEEEEec
Confidence 4555555553 323222 2 45799999999977643 322 57999999999999666654443
No 124
>PF05118 Asp_Arg_Hydrox: Aspartyl/Asparaginyl beta-hydroxylase; InterPro: IPR007803 The alpha-ketoglutarate-dependent dioxygenase aspartyl (asparaginyl) beta-hydroxylase (1.14.11.16 from EC) specifically hydroxylates one aspartic or asparagine residue in certain epidermal growth factor-like domains of a number of proteins. Its action may be due to histidine-675, which, when mutated to an alanine residue, causes the loss of enzymatic activity in the protein []. An invertebrate alpha-ketoglutarate-dependent aspartyl/asparaginyl beta-hydroxylase, which posttranslationally hydroxylates specific aspartyl or asparaginyl residues within epidermal growth factor-like modules [], activity was found to be similar to that of the purified mammalian aspartyl/asparaginyl beta-hydroxylase with respect to cofactor requirements, stereochemistry and substrate sequence specificity []. This enzyme requires Fe2+ as a cofactor. Some vitamin K-dependent coagulation factors, as well as synthetic peptides based on the structure of the first epidermal growth factor domain of human coagulation factor IX or X, can act as acceptors.; GO: 0018193 peptidyl-amino acid modification, 0030176 integral to endoplasmic reticulum membrane; PDB: 3RCQ_A 1E5S_A 1E5R_B.
Probab=93.70 E-value=0.33 Score=42.13 Aligned_cols=73 Identities=14% Similarity=0.073 Sum_probs=45.4
Q ss_pred eEEEEEEecCCCcccCeeeCC---CEEEEEEe---CeEEEEEEcCCCceEEEEEcCCCEEEeCCCcEEEEEecCCCcEEE
Q 018395 37 IGAAKLALEKNGFALPHYCDS---ARVAYVLQ---GSGVAGIVLPEKEEKVVAIKKGDGIALPFGVVTWWYNKEDTELVV 110 (356)
Q Consensus 37 ~~~~~~~l~Pg~~~~pH~h~a---~e~~yVl~---G~~~~~vv~~~~~~~~~~l~~GDv~~iP~G~~H~~~N~g~e~l~~ 110 (356)
..+....|.||+.+.||.-.. -.+.+-|. ..+.+.+ ++ ..+..++|+++++-....|+..|.|+++ ++
T Consensus 80 ~~~~~s~l~pg~~I~pH~d~~~~~lR~Hl~L~~p~~~~~~~v---~~--~~~~w~~G~~~~fD~s~~H~~~N~~~~~-Rv 153 (163)
T PF05118_consen 80 GRVRFSRLPPGTHIKPHRDPTNLRLRLHLPLIVPNPGCYIRV---GG--ETRHWREGECWVFDDSFEHEVWNNGDED-RV 153 (163)
T ss_dssp EEEEEEEEECTEEEEEE-SS-TTEEEEEEEEC--STTEEEEE---TT--EEEB--CTEEEEE-TTS-EEEEESSSS--EE
T ss_pred hhEEEEEECCCCEECCeeCCCCcceEEEEEEEcCCCCeEEEE---CC--eEEEeccCcEEEEeCCEEEEEEeCCCCC-EE
Confidence 457788999999999997621 12222222 3455544 22 3489999999999999999999999884 44
Q ss_pred EEEee
Q 018395 111 LFLGD 115 (356)
Q Consensus 111 l~i~~ 115 (356)
+.+++
T Consensus 154 ~L~vD 158 (163)
T PF05118_consen 154 VLIVD 158 (163)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 43444
No 125
>PRK10572 DNA-binding transcriptional regulator AraC; Provisional
Probab=93.39 E-value=0.25 Score=46.51 Aligned_cols=46 Identities=17% Similarity=0.273 Sum_probs=36.7
Q ss_pred eCCCEEEEEEeCeEEEEEEcCCCceEEEEEcCCCEEEeCCCcEEEEEecCC
Q 018395 55 CDSARVAYVLQGSGVAGIVLPEKEEKVVAIKKGDGIALPFGVVTWWYNKED 105 (356)
Q Consensus 55 h~a~e~~yVl~G~~~~~vv~~~~~~~~~~l~~GDv~~iP~G~~H~~~N~g~ 105 (356)
.++-.+.|+++|++.+.+ ++ ..+.+++||++++|+|.+|.+....+
T Consensus 47 ~~~~~i~~~~~G~~~~~~---~~--~~~~~~~g~~i~i~p~~~h~~~~~~~ 92 (290)
T PRK10572 47 MKGYILNLTIRGQGVIFN---GG--RAFVCRPGDLLLFPPGEIHHYGRHPD 92 (290)
T ss_pred ccceEEEEEEeccEEEec---CC--eeEecCCCCEEEECCCCceeeccCCC
Confidence 355678899999999864 22 34899999999999999998766443
No 126
>KOG2757 consensus Mannose-6-phosphate isomerase [Carbohydrate transport and metabolism]
Probab=93.19 E-value=0.61 Score=45.18 Aligned_cols=62 Identities=15% Similarity=0.180 Sum_probs=48.4
Q ss_pred CceEEEEEEecCCCcccCeeeCCCEEEEEEeCeEEEEEEcCCCceEEEEEcCCCEEEeCCCcEEEE
Q 018395 35 GNIGAAKLALEKNGFALPHYCDSARVAYVLQGSGVAGIVLPEKEEKVVAIKKGDGIALPFGVVTWW 100 (356)
Q Consensus 35 ~~~~~~~~~l~Pg~~~~pH~h~a~e~~yVl~G~~~~~vv~~~~~~~~~~l~~GDv~~iP~G~~H~~ 100 (356)
..+.+..+++++|.....-.-++..++.|++|+|++..-. .....+++|||++||+.+.-.+
T Consensus 331 ~eF~v~~~~v~~g~~~~~~~~~~~SIllv~~G~g~l~~~t----~~~~~v~rG~V~fI~a~~~i~~ 392 (411)
T KOG2757|consen 331 EEFAVLETKVPTGESYKFPGVDGPSILLVLKGSGILKTDT----DSKILVNRGDVLFIPANHPIHL 392 (411)
T ss_pred cceeEEEeecCCCceEEeecCCCceEEEEEecceEEecCC----CCceeeccCcEEEEcCCCCcee
Confidence 4678888999987655444558899999999999997521 2347999999999999987644
No 127
>PF05726 Pirin_C: Pirin C-terminal cupin domain; InterPro: IPR008778 This entry represents C-terminal domain of Pirin proteins from both eukaryotes and prokaryotes. The function of Pirin is unknown but the gene coding for this protein is known to be expressed in all tissues in the human body although it is expressed most strongly in the liver and heart. Pirin is known to be a nuclear protein, exclusively localised within the nucleoplasma and predominantly concentrated within dot-like subnuclear structures []. Pirin is composed of two structurally similar domains arranged face to face. The N-terminal domain additionally features four beta-strands, and the C-terminal domain also includes four additional -strands and a short alpha-helix. Although the two domains are similar, the C-terminal domain of Pirin differs from the N-terminal domain as it does not contain a metal binding site and its sequence does not contain the conserved metal-coordinating residues []. Pirin is confirmed to be a member of the cupin superfamily on the basis of primary sequence and structural similarity. The presence of a metal binding site in the N-terminal beta-barrel of Pirin, may be significant in its role in regulating NFI DNA replication and NF-kappaB transcription factor activity []. Pirin structure has been found to closely resemble members of the cupin superfamily. Pirin contains the two characteristic sequences of the cupin superfamily, namely PG-(X)5-HXH-(X)4-E-(X)6-G and G-(X)5-PXG-(X)2-H-(X)3-N separated by a variable stretch of 15-50 amino acids. These motifs are best conserved in the N-terminal where the conserved histidine and glutamic acid residues correspond to the metal-coordinating residues. The C-terminal domain motifs lack the metal binding residues normally associated with the cupin fold []. Pirin was identified to be a metal-binding protein [], and was found that the metal-binding residues of Pirins are highly conserved across mammals, plants, fungi, and prokaryotic organisms. Pirin acts as a cofactor for the transcription factor NFI, the regulatory mechanism of which is generally believed to require the assistance of a metal ion []. Structural data supports the hypothesis that the bound iron of Pirin may participate in this transcriptional regulation by enhancing and stabilising the formation of the p50,Bcl3,DNA complex []. Metals have been implicated directly or indirectly in the NF-kappaB family of transcription factors that control expression of a number of early response genes associated with inflammatory responses, cell growth, cell cycle progression, and neoplastic transformation []. However, most metal-dependent transcription factors are DNA-binding proteins that bind to specific sequences when the metal binds to the protein. Pirin, on the other hand, appears to function differently and bind to the transcription factor DNA complex [].; PDB: 1J1L_A 3ACL_A 2P17_A.
Probab=93.09 E-value=1.4 Score=35.18 Aligned_cols=68 Identities=18% Similarity=0.254 Sum_probs=45.8
Q ss_pred EEEEecCCCeecccccccCCeeEEEEEeceEEEEEEccCCceEEEEEecCCcEEEEcCCcEEEEeeCCCCeEEEEEE
Q 018395 226 DLVRLDGKAMCSPGFSCDSALQVTYIVRGSGRAQIVGPDGKRVLETTVKAGNLFIVPRFYVVSKIADPDGLAWFSII 302 (356)
Q Consensus 226 ~~v~l~~g~~~~PH~h~~~A~ei~~v~~G~~~~~iv~~~g~~~~~~~l~~Gdv~vvP~g~~h~~~~~~~~~~~~~~~ 302 (356)
..++|+||+-......+. -.-++||++|++.+ + ++. ..+.+|++.++..|-...+.+..++++++.+-
T Consensus 2 ~di~l~~g~~~~~~~~~~-~~~~iyv~~G~~~v---~--~~~---~~~~~~~~~~l~~g~~i~~~a~~~~a~~lll~ 69 (104)
T PF05726_consen 2 LDIKLEPGASFTLPLPPG-HNAFIYVLEGSVEV---G--GEE---DPLEAGQLVVLEDGDEIELTAGEEGARFLLLG 69 (104)
T ss_dssp EEEEE-TT-EEEEEEETT--EEEEEEEESEEEE---T--TTT---EEEETTEEEEE-SECEEEEEESSSSEEEEEEE
T ss_pred EEEEECCCCEEEeecCCC-CEEEEEEEECcEEE---C--CCc---ceECCCcEEEECCCceEEEEECCCCcEEEEEE
Confidence 457889998875433333 45699999999754 2 222 46899999999977777767766888877765
No 128
>PF02678 Pirin: Pirin; InterPro: IPR003829 This entry represents N-terminal domain of Pirin proteins from both eukaryotes and prokaryotes. The function of Pirin is unknown but the gene coding for this protein is known to be expressed in all tissues in the human body although it is expressed most strongly in the liver and heart. Pirin is known to be a nuclear protein, exclusively localised within the nucleoplasma and predominantly concentrated within dot-like subnuclear structures []. Pirin is composed of two structurally similar domains arranged face to face. The N-terminal domain additionally features four beta-strands, and the C-terminal domain also includes four additional -strands and a short alpha-helix. Although the two domains are similar, the C-terminal domain of Pirin differs from the N-terminal domain as it does not contain a metal binding site and its sequence does not contain the conserved metal-coordinating residues []. Pirin is confirmed to be a member of the cupin superfamily on the basis of primary sequence and structural similarity. The presence of a metal binding site in the N-terminal beta-barrel of Pirin, may be significant in its role in regulating NFI DNA replication and NF-kappaB transcription factor activity []. Pirin structure has been found to closely resemble members of the cupin superfamily. Pirin contains the two characteristic sequences of the cupin superfamily, namely PG-(X)5-HXH-(X)4-E-(X)6-G and G-(X)5-PXG-(X)2-H-(X)3-N separated by a variable stretch of 15-50 amino acids. These motifs are best conserved in the N-terminal where the conserved histidine and glutamic acid residues correspond to the metal-coordinating residues. The C-terminal domain motifs lack the metal binding residues normally associated with the cupin fold []. Pirin was identified to be a metal-binding protein [], and was found that the metal-binding residues of Pirins are highly conserved across mammals, plants, fungi, and prokaryotic organisms. Pirin acts as a cofactor for the transcription factor NFI, the regulatory mechanism of which is generally believed to require the assistance of a metal ion []. Structural data supports the hypothesis that the bound iron of Pirin may participate in this transcriptional regulation by enhancing and stabilising the formation of the p50,Bcl3,DNA complex []. Metals have been implicated directly or indirectly in the NF-kappaB family of transcription factors that control expression of a number of early response genes associated with inflammatory responses, cell growth, cell cycle progression, and neoplastic transformation []. However, most metal-dependent transcription factors are DNA-binding proteins that bind to specific sequences when the metal binds to the protein. Pirin, on the other hand, appears to function differently and bind to the transcription factor DNA complex [].; PDB: 2VEC_A 1J1L_A 3ACL_A 2P17_A 1TQ5_A.
Probab=93.03 E-value=0.58 Score=37.73 Aligned_cols=63 Identities=24% Similarity=0.096 Sum_probs=46.9
Q ss_pred CCcccCeee-CCCEEEEEEeCeEEEEEEcCCCceEEEEEcCCCEEEeCCC--cEEEEEecCC-CcEEEEEE
Q 018395 47 NGFALPHYC-DSARVAYVLQGSGVAGIVLPEKEEKVVAIKKGDGIALPFG--VVTWWYNKED-TELVVLFL 113 (356)
Q Consensus 47 g~~~~pH~h-~a~e~~yVl~G~~~~~vv~~~~~~~~~~l~~GDv~~iP~G--~~H~~~N~g~-e~l~~l~i 113 (356)
+.-+.+|-| +-+-+.||++|+..-. +..+.. ..|++||+-.+-+| +.|.-.|..+ ++++.+-+
T Consensus 39 ~~gf~~HPH~g~eivTyv~~G~~~H~--Ds~G~~--~~l~~G~vq~m~AG~Gi~H~E~~~~~~~~~~~lQl 105 (107)
T PF02678_consen 39 GAGFPMHPHRGFEIVTYVLEGELRHR--DSLGNR--GVLRAGDVQWMTAGSGIVHSERNASDGGPLHGLQL 105 (107)
T ss_dssp TTEEEEEEECSEEEEEEEEESEEEEE--ETTSEE--EEEETTEEEEEE-TTTEEEEEEE-TSSS-EEEEEE
T ss_pred CCCCCCcCCCCceEEEEEecCEEEEE--CCCCCe--eEeCCCeEEEEeCCCCceEEEecCCCCCeEEEEEE
Confidence 566799999 7778899999988664 555533 68999999998876 8899999776 67776644
No 129
>PF12852 Cupin_6: Cupin
Probab=92.84 E-value=0.43 Score=41.93 Aligned_cols=41 Identities=22% Similarity=0.383 Sum_probs=33.3
Q ss_pred eeEEEEEeceEEEEEEccCCceEEEEEecCCcEEEEcCCcEEEEe
Q 018395 246 LQVTYIVRGSGRAQIVGPDGKRVLETTVKAGNLFIVPRFYVVSKI 290 (356)
Q Consensus 246 ~ei~~v~~G~~~~~iv~~~g~~~~~~~l~~Gdv~vvP~g~~h~~~ 290 (356)
..+.+|++|++++.+-+ .+.. -.|++||++++|+|..|.+-
T Consensus 36 ~~fh~V~~G~~~l~~~~-~~~~---~~L~~GDivllp~g~~H~l~ 76 (186)
T PF12852_consen 36 ASFHVVLRGSCWLRVPG-GGEP---IRLEAGDIVLLPRGTAHVLS 76 (186)
T ss_pred eEEEEEECCeEEEEEcC-CCCe---EEecCCCEEEEcCCCCeEeC
Confidence 57889999999999544 2222 47999999999999999984
No 130
>KOG3995 consensus 3-hydroxyanthranilate oxygenase HAAO [Amino acid transport and metabolism]
Probab=92.40 E-value=0.17 Score=45.26 Aligned_cols=64 Identities=23% Similarity=0.178 Sum_probs=52.3
Q ss_pred EEecCCCcccCeeeCCCEEEEEEeCeEEEEEEcCCCceEEEEEcCCCEEEeCCCcEEEEEecCCC
Q 018395 42 LALEKNGFALPHYCDSARVAYVLQGSGVAGIVLPEKEEKVVAIKKGDGIALPFGVVTWWYNKEDT 106 (356)
Q Consensus 42 ~~l~Pg~~~~pH~h~a~e~~yVl~G~~~~~vv~~~~~~~~~~l~~GDv~~iP~G~~H~~~N~g~e 106 (356)
+.=.|+....-|....+|++|=.+|...+.+++.+.. +...+++||++.+|+.++|.-+--.++
T Consensus 38 ~VGGPN~RkdyHieegeE~FyQ~KGdMvLKVie~g~~-rDivI~qGe~flLParVpHSPqRFant 101 (279)
T KOG3995|consen 38 FVGGPNTRKDYHIEEGEEVFYQLKGDMVLKVLEQGKH-RDVVIRQGEIFLLPARVPHSPQRFANT 101 (279)
T ss_pred EecCCCcccccccCCcchhheeecCceEEeeeccCcc-eeeEEecCcEEEeccCCCCChhhhccc
Confidence 4446777777777799999999999999999887654 568999999999999999987654444
No 131
>PF09313 DUF1971: Domain of unknown function (DUF1971); InterPro: IPR015392 This uncharacterised domain is predominantly found in bacterial Tellurite resistance proteins. ; PDB: 3BB6_C 3M70_A 3DL3_I.
Probab=92.30 E-value=1 Score=34.55 Aligned_cols=67 Identities=12% Similarity=0.034 Sum_probs=45.1
Q ss_pred CCCeecccccccCCeeEEEEEeceEEEEEEccCCceEE-EEEecCCcEEEEcCCcEEEEeeCCCCeEE
Q 018395 232 GKAMCSPGFSCDSALQVTYIVRGSGRAQIVGPDGKRVL-ETTVKAGNLFIVPRFYVVSKIADPDGLAW 298 (356)
Q Consensus 232 ~g~~~~PH~h~~~A~ei~~v~~G~~~~~iv~~~g~~~~-~~~l~~Gdv~vvP~g~~h~~~~~~~~~~~ 298 (356)
|-+++..|----+....+-|++|+.+....+++|...- ..-+.+|+..+||...+|.+..-+++++|
T Consensus 12 P~~l~~~H~TK~GtWg~l~Vl~G~L~f~~~~~~~~~~~~~~~~~~~~~~~i~Pq~wH~V~p~s~D~~f 79 (82)
T PF09313_consen 12 PAALLERHNTKAGTWGKLRVLEGELKFYGLDEEGEEPEEEVFIPAGQPPVIEPQQWHRVEPLSDDLRF 79 (82)
T ss_dssp -GGGGSSBCCSTTEEEEEEEEESEEEEEEESSTT-SESEEEEEETTEEEEE-TT-EEEEEESSTT-EE
T ss_pred cHHHHhhcCCCCCeEEEEEEEeeEEEEEEECCCCCceeEEEEeCCCCCceeCCCceEEEEECCCCEEE
Confidence 34456666533234556789999999999999864211 22688999999999999999776666655
No 132
>PRK15131 mannose-6-phosphate isomerase; Provisional
Probab=91.91 E-value=1.9 Score=42.86 Aligned_cols=59 Identities=14% Similarity=0.156 Sum_probs=42.7
Q ss_pred ceEEEEEEecCCCcccCeeeCCCEEEEEEeCeEEEEEEcCCCceEEEEEcCCCEEEeCCCcEEEEE
Q 018395 36 NIGAAKLALEKNGFALPHYCDSARVAYVLQGSGVAGIVLPEKEEKVVAIKKGDGIALPFGVVTWWY 101 (356)
Q Consensus 36 ~~~~~~~~l~Pg~~~~pH~h~a~e~~yVl~G~~~~~vv~~~~~~~~~~l~~GDv~~iP~G~~H~~~ 101 (356)
.+.+.++.+.++....+ .....+++|++|++++.. ++ ....|++|+++++|++...+..
T Consensus 320 ~F~~~~~~l~~~~~~~~--~~~~~Illv~~G~~~i~~---~~--~~~~l~~G~~~fipa~~~~~~~ 378 (389)
T PRK15131 320 DFAFSLHDLSDQPTTLS--QQSAAILFCVEGEAVLWK---GE--QQLTLKPGESAFIAANESPVTV 378 (389)
T ss_pred CcEEEEEEECCceEEec--CCCcEEEEEEcceEEEEe---CC--eEEEECCCCEEEEeCCCccEEE
Confidence 46777777766522221 167799999999999853 22 2378999999999998876665
No 133
>TIGR02466 conserved hypothetical protein. This family consists of uncharacterized proteins in Caulobacter crescentus CB15, Bdellovibrio bacteriovorus HD100, Synechococcus sp. WH 8102 (2), Silicibacter pomeroyi DSS-3 (2), and Hyphomonas neptunium ATCC 15444. The context of nearby genes differs substantially between members and does point to any specific biological role.
Probab=91.87 E-value=0.57 Score=42.19 Aligned_cols=75 Identities=11% Similarity=0.105 Sum_probs=47.3
Q ss_pred EEEecCCCeecccccccCC--eeEEEEE--eceEEEEEEccCCce-----------------EEEEEecCCcEEEEcCCc
Q 018395 227 LVRLDGKAMCSPGFSCDSA--LQVTYIV--RGSGRAQIVGPDGKR-----------------VLETTVKAGNLFIVPRFY 285 (356)
Q Consensus 227 ~v~l~~g~~~~PH~h~~~A--~ei~~v~--~G~~~~~iv~~~g~~-----------------~~~~~l~~Gdv~vvP~g~ 285 (356)
.+.+.+|+...+|.|++ + +-+.||. .+.+...+.+|.... .+.-.-++||+++||.-+
T Consensus 100 ~ni~~~Gg~h~~H~Hp~-~~lSgvyYl~~p~~~g~~~f~~p~~~~~~~~~~~~~~~~~~~~~~~~v~P~~G~lvlFPS~L 178 (201)
T TIGR02466 100 VNILPQGGTHSPHLHPG-SVISGTYYVQTPENCGAIKFEDPRLDDMMAAPMRIPNAKRAVQRFVYVPPQEGRVLLFESWL 178 (201)
T ss_pred EEEcCCCCccCceECCC-ceEEEEEEEeCCCCCCceeEecCcchhhhccccccCccccccCccEEECCCCCeEEEECCCC
Confidence 34568899999999998 6 2344444 244556666553211 111244899999999999
Q ss_pred EEEEe--eCCCCeEEEEEE
Q 018395 286 VVSKI--ADPDGLAWFSII 302 (356)
Q Consensus 286 ~h~~~--~~~~~~~~~~~~ 302 (356)
.|... .+++.-.-++|+
T Consensus 179 ~H~v~p~~~~~~RISiSFN 197 (201)
T TIGR02466 179 RHEVPPNESEEERISVSFN 197 (201)
T ss_pred ceecCCCCCCCCEEEEEEe
Confidence 99983 344444444543
No 134
>PF02373 JmjC: JmjC domain, hydroxylase; InterPro: IPR013129 Jumonji protein is required for neural tube formation in mice [].There is evidence of domain swapping within the jumonji family of transcription factors []. This domain is often associated with jmjN (see IPR003349 from INTERPRO) and belongs to the Cupin superfamily [].; PDB: 2YU2_A 2YU1_A 3AVR_A 3AVS_A 2OX0_B 2OQ6_B 2WWJ_A 2Q8D_A 3PDQ_A 2YBK_A ....
Probab=91.75 E-value=0.23 Score=39.68 Aligned_cols=27 Identities=22% Similarity=0.242 Sum_probs=21.2
Q ss_pred EEEEEcCCCEEEeCCCcEEEEEecCCC
Q 018395 80 KVVAIKKGDGIALPFGVVTWWYNKEDT 106 (356)
Q Consensus 80 ~~~~l~~GDv~~iP~G~~H~~~N~g~e 106 (356)
.....++||.+++|+|+.|+..|.|+.
T Consensus 81 ~~~~Q~~Ge~V~i~pg~~H~v~n~g~~ 107 (114)
T PF02373_consen 81 YRFVQKPGEFVFIPPGAYHQVFNLGDN 107 (114)
T ss_dssp EEEEEETT-EEEE-TT-EEEEEESSSE
T ss_pred ccceECCCCEEEECCCceEEEEeCCce
Confidence 357889999999999999999999864
No 135
>COG2850 Uncharacterized conserved protein [Function unknown]
Probab=91.60 E-value=0.28 Score=47.54 Aligned_cols=70 Identities=11% Similarity=0.183 Sum_probs=48.8
Q ss_pred EecCCCeecccccccCCeeEEEEEec--eEEEEEEccC----------------CceEEEEEecCCcEEEEcCCcEEEEe
Q 018395 229 RLDGKAMCSPGFSCDSALQVTYIVRG--SGRAQIVGPD----------------GKRVLETTVKAGNLFIVPRFYVVSKI 290 (356)
Q Consensus 229 ~l~~g~~~~PH~h~~~A~ei~~v~~G--~~~~~iv~~~----------------g~~~~~~~l~~Gdv~vvP~g~~h~~~ 290 (356)
...+||-+-|||-.. =+|+++| +-|.++--.. +....+..+.+|||.|||+|++|+=+
T Consensus 125 ~a~~GGgvg~H~D~Y----DVfliQg~G~RRW~v~~~~~~~~~~~~~d~~~~~~f~~~~d~vlepGDiLYiPp~~~H~gv 200 (383)
T COG2850 125 FAAPGGGVGPHFDQY----DVFLIQGQGRRRWRVGKKCNMSTLCPHPDLLILAPFEPDIDEVLEPGDILYIPPGFPHYGV 200 (383)
T ss_pred EecCCCccCccccch----heeEEeecccceeecCCcccccCcCCCcchhhcCCCCchhhhhcCCCceeecCCCCCcCCc
Confidence 568899999999765 3555665 5566665441 01233458999999999999999988
Q ss_pred eCCCCeEEEEEE
Q 018395 291 ADPDGLAWFSII 302 (356)
Q Consensus 291 ~~~~~~~~~~~~ 302 (356)
+-++.+.+-.-+
T Consensus 201 ae~dc~tySvG~ 212 (383)
T COG2850 201 AEDDCMTYSVGF 212 (383)
T ss_pred ccccccceeeec
Confidence 776655554334
No 136
>PRK12335 tellurite resistance protein TehB; Provisional
Probab=91.41 E-value=0.5 Score=44.72 Aligned_cols=72 Identities=13% Similarity=0.028 Sum_probs=54.4
Q ss_pred cCCCeecccccccCCeeEEEEEeceEEEEEEccCCceEEEEEecCC-cEEEEcCCcEEEEeeCCCCeE-EEEEE
Q 018395 231 DGKAMCSPGFSCDSALQVTYIVRGSGRAQIVGPDGKRVLETTVKAG-NLFIVPRFYVVSKIADPDGLA-WFSII 302 (356)
Q Consensus 231 ~~g~~~~PH~h~~~A~ei~~v~~G~~~~~iv~~~g~~~~~~~l~~G-dv~vvP~g~~h~~~~~~~~~~-~~~~~ 302 (356)
-|++++.||-|.-+..+.+.|++|+..+-+.+++|.......+.+. +.-++|.+.+|.+...++++. ++.|+
T Consensus 19 ~p~~~~~~H~t~~g~~~~~~vl~G~l~~~~~de~g~~~~~~~l~~~~~~~~i~p~~wh~v~~~s~d~~~~l~fy 92 (287)
T PRK12335 19 LPEMFQEKHNTKEGTWAKLTVLKGELKFYELTEDGEELSEHIFDAENQPPFIEPQAWHRIEAASDDLECQLSFY 92 (287)
T ss_pred chHHHHhccCCCCCcceEEEEEeeeEEEEEECCCCCeeeEEEEecCCCCceeCCcceEEEEEcCCCcEEEEEEE
Confidence 4678899999943489999999999999999999865444556664 455799999999977655544 34443
No 137
>PLN02658 homogentisate 1,2-dioxygenase
Probab=91.06 E-value=1.6 Score=43.55 Aligned_cols=214 Identities=11% Similarity=-0.033 Sum_probs=109.5
Q ss_pred cCCCcc--cCeee-CCCEEEEEEeCeEEEEEEcCCCceEEEEEcCCCEEEeCCCcEEEEEecCCCcEEEEEEeeC-CCCC
Q 018395 45 EKNGFA--LPHYC-DSARVAYVLQGSGVAGIVLPEKEEKVVAIKKGDGIALPFGVVTWWYNKEDTELVVLFLGDT-SKGH 120 (356)
Q Consensus 45 ~Pg~~~--~pH~h-~a~e~~yVl~G~~~~~vv~~~~~~~~~~l~~GDv~~iP~G~~H~~~N~g~e~l~~l~i~~~-~~~~ 120 (356)
.++.-+ ..-++ ++++++|+.+|++.+.-. -|+ .++++||+++||+|+.+.+.=. +.+.+.+.+-.. +++.
T Consensus 132 ~~n~sM~~~~f~NaDGD~Livpq~G~l~i~TE--fG~---L~v~pgei~VIPRG~~frv~l~-~gp~rgyv~E~~g~~f~ 205 (435)
T PLN02658 132 VANKSMDDCAFCNADGDFLIVPQQGRLWIKTE--LGK---LQVSPGEIVVIPRGFRFAVDLP-DGPSRGYVLEIFGGHFQ 205 (435)
T ss_pred eCCCCCccceeecCCCCEEEEEEeCCEEEEEe--ccc---eEecCCCEEEecCccEEEEecC-CCCeeEEEEeecCCccc
Confidence 444433 23456 999999999999999642 232 6899999999999999887532 334444443332 3344
Q ss_pred CCCceeEEeecccccccccCcHHHHHhhccCCHHHHHHhhcccCCceEEEcCCCCcC----CCCC-----cccCCCceee
Q 018395 121 KAGEFTNFFLTGANGIFTGFSTEFVSRAWDLDENTVKTLVGKQTGKGIVKLDANAKL----PEPK-----KEHRDGMAFN 191 (356)
Q Consensus 121 ~pg~~~~f~lag~~s~l~~~~~~vl~~af~~~~~~~~~l~~~q~~~~iv~~~~~~~~----~~p~-----~~~~~~~~~~ 191 (356)
-|..= ..|++.+. -++| |..+..-.+.. ......+++|....... -.|- ...-.+++||
T Consensus 206 LPdlG----piG~ngla--npRD-----F~~P~a~~ed~-~~~~~~vv~K~~g~l~~~~~~hsPfDVVaWhGn~~Pykyd 273 (435)
T PLN02658 206 LPDLG----PIGANGLA--NPRD-----FLHPVAWFEDG-SRPGYTIVQKFGGELFTAKQDFSPFNVVAWHGNYVPYKYD 273 (435)
T ss_pred CCCCC----cccccCCC--CHhH-----ccCCccccccc-cCCcEEEEEEeCCeeEEEecCCCCceEeeecCcccceEec
Confidence 44210 01222221 1222 22222111111 01111245554432210 1231 1222456777
Q ss_pred ccCCCCC--c----ccCCCcEEEEeCCCCCCCccccCcee---EEEEecCCCeecccccccCCeeEEEEEeceEEEEEEc
Q 018395 192 CEEAPLD--V----DIKNGGRVVLLNTKNLPLVGEVGCGA---DLVRLDGKAMCSPGFSCDSALQVTYIVRGSGRAQIVG 262 (356)
Q Consensus 192 l~~~~~~--~----~~~~gG~~~~~~~~~~p~l~~l~~s~---~~v~l~~g~~~~PH~h~~~A~ei~~v~~G~~~~~iv~ 262 (356)
|..=.|. + -.+.--.+.++ +.+-|.....+.-+ -+.... ++++.|.+|.|-.+|+++.+.|.- +
T Consensus 274 l~~F~pi~svs~dH~dPSI~tvlta-ps~~pg~a~~dFVIF~PRw~vae-~TfrpPyyHrN~~sEfmgli~G~y-----~ 346 (435)
T PLN02658 274 LSKFCPVNTVLFDHADPSINTVLTA-PTDKPGVALADFVIFPPRWLVAE-HTFRPPYYHRNCMSEFMGLIYGSY-----E 346 (435)
T ss_pred hHHceeccccccccCCCCceEEEec-cCCCCCccccceEEECCcccccc-CccCCCCCccchhhhhhhhccccc-----c
Confidence 7743332 0 01111112222 22344433222111 111233 899999999998888888888762 1
Q ss_pred cCCceEEEEEecCCcEEEEcCCcEEE
Q 018395 263 PDGKRVLETTVKAGNLFIVPRFYVVS 288 (356)
Q Consensus 263 ~~g~~~~~~~l~~Gdv~vvP~g~~h~ 288 (356)
. + +..+.+|.+-.=|.+.+|=
T Consensus 347 a---k--~~gf~pGg~SLH~~~~pHG 367 (435)
T PLN02658 347 A---K--ADGFLPGGASLHSCMTPHG 367 (435)
T ss_pred c---c--cCCccCCeeeecCCCCCCC
Confidence 1 1 1137899999999998874
No 138
>COG3542 Uncharacterized conserved protein [Function unknown]
Probab=91.00 E-value=8.1 Score=32.86 Aligned_cols=118 Identities=14% Similarity=0.157 Sum_probs=67.8
Q ss_pred CCCeEEEEeCCC---CCCCcc-cCceEEEEEEecCCCcccCeeeCCCEEEEEEeCe-EEEEEEcCCCceEEE----EEcC
Q 018395 16 GNGGSYHAWCPN---ELPMLR-QGNIGAAKLALEKNGFALPHYCDSARVAYVLQGS-GVAGIVLPEKEEKVV----AIKK 86 (356)
Q Consensus 16 ~~~G~i~~~~~~---~~p~l~-~~~~~~~~~~l~Pg~~~~pH~h~a~e~~yVl~G~-~~~~vv~~~~~~~~~----~l~~ 86 (356)
.+||++++.... +.+.-. .......+.-|+++.+...|-..++|+.+...|. +.+.++. +|+..++ +++.
T Consensus 19 pEGG~y~eT~rs~e~~~~G~~~R~~sT~IYyLLe~~~~s~~HRv~a~eiwHf~ag~pl~~~l~~-dG~~~s~~LG~d~~~ 97 (162)
T COG3542 19 PEGGFYRETFRSEEKDAAGGDVRNHSTAIYYLLEEDNISAWHRVTADEIWHFYAGAPLELHLSE-DGGAESFTLGPDLEK 97 (162)
T ss_pred CCCCceeeeeccccccCCCccccceeEEEEEEecCCccchheecchhheEEEecCCceEEEEEe-CCCeEEEEecccccC
Confidence 378888765431 222221 2234566778899885444443688988888876 7777776 5544433 5567
Q ss_pred CCE--EEeCCCcEE-EEEecCCCcEEEEEEeeCCCCCCCC-ceeEEeecccccccccC
Q 018395 87 GDG--IALPFGVVT-WWYNKEDTELVVLFLGDTSKGHKAG-EFTNFFLTGANGIFTGF 140 (356)
Q Consensus 87 GDv--~~iP~G~~H-~~~N~g~e~l~~l~i~~~~~~~~pg-~~~~f~lag~~s~l~~~ 140 (356)
|.+ +++|+|... ...-.|++ -.++.... -|| +|++|-++-..+.|...
T Consensus 98 Ge~~Q~vVP~g~w~aS~~~~g~~-~tLVgCtV-----aPGFdF~~Fela~~~dlL~~~ 149 (162)
T COG3542 98 GERPQYVVPAGTWWASAVSLGED-YTLVGCTV-----APGFDFEDFELAEPEDLLKWY 149 (162)
T ss_pred CceeEEEEeCCcEEEEEEecCCC-ceEEEEEe-----cCCccchhccccCchhhhhcC
Confidence 765 689999433 33334433 23333221 255 46777777655555543
No 139
>PF05995 CDO_I: Cysteine dioxygenase type I; InterPro: IPR010300 Cysteine dioxygenase type I (1.13.11.20 from EC) converts cysteine to cysteinesulphinic acid and is the rate-limiting step in sulphate production.; GO: 0005506 iron ion binding, 0017172 cysteine dioxygenase activity, 0046439 L-cysteine metabolic process, 0055114 oxidation-reduction process; PDB: 2IC1_A 3EQE_B 3ELN_A 2B5H_A 2GH2_A 2Q4S_A 2ATF_A 2GM6_A 3USS_B.
Probab=90.73 E-value=3.3 Score=36.36 Aligned_cols=80 Identities=6% Similarity=-0.063 Sum_probs=54.6
Q ss_pred ceeEEEEecCCCeecccccccCCeeEEEEEeceEEEEEEccCCc---e--E--EEEEecCCcEEEEcCCcEEEE-eeC-C
Q 018395 223 CGADLVRLDGKAMCSPGFSCDSALQVTYIVRGSGRAQIVGPDGK---R--V--LETTVKAGNLFIVPRFYVVSK-IAD-P 293 (356)
Q Consensus 223 ~s~~~v~l~~g~~~~PH~h~~~A~ei~~v~~G~~~~~iv~~~g~---~--~--~~~~l~~Gdv~vvP~g~~h~~-~~~-~ 293 (356)
..+-.+.-.||--.++|=|.. ++-++.|++|+.+-+....... . . ....+..|.+.+++.+.+|-+ |++ +
T Consensus 75 ~el~ll~W~pGq~S~IHDH~~-s~g~~~vl~G~l~e~~y~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~iH~v~n~s~~ 153 (175)
T PF05995_consen 75 FELWLLCWPPGQRSPIHDHGG-SWGWVKVLSGELEETRYRRPDDGGAPLELVGRERLLPGGVTYIFDPHGIHRVENPSGD 153 (175)
T ss_dssp -EEEEEEE-TT-B--EEE-TT-SEEEEEEEESEEEEEEEEESTSSS-EEEECEEEEEETTTEEEEBTTTBEEEEEES-SS
T ss_pred eEEEEEEeCCCCcCCCCCCCC-ceEEEEEecceEEEEEeccCCcccCcccccCceEecCCCeEEecCCCCeEEeccCCCC
Confidence 556678899999999999998 8999999999998887766543 1 1 122467888889999999999 665 5
Q ss_pred CCeEEEEEEc
Q 018395 294 DGLAWFSIIT 303 (356)
Q Consensus 294 ~~~~~~~~~~ 303 (356)
+.+.-+=++.
T Consensus 154 ~~avSLHvYs 163 (175)
T PF05995_consen 154 EPAVSLHVYS 163 (175)
T ss_dssp S-EEEEEEEE
T ss_pred CCEEEEEEcC
Confidence 6666555553
No 140
>PF04209 HgmA: homogentisate 1,2-dioxygenase; InterPro: IPR005708 Alkaptonuria (AKU), a rare hereditary disorder, was the first disease to be interpreted as an inborn error of metabolism. The deficiency causes homogentisic aciduria, ochronosis, and arthritis. AKU patients are deficient for homogentisate 1,2 dioxygenase (1.13.11.5 from EC), the enzyme that mediates the conversion of homogentisate to maleylacetoacetate; a step in the catabolism of both tyrosine and phenylalanine. Homogentisate + O(2) = 4-maleylacetoacetate. ; GO: 0004411 homogentisate 1,2-dioxygenase activity, 0006559 L-phenylalanine catabolic process, 0006570 tyrosine metabolic process, 0055114 oxidation-reduction process; PDB: 1EY2_A 1EYB_A.
Probab=90.71 E-value=1 Score=44.93 Aligned_cols=62 Identities=19% Similarity=0.166 Sum_probs=39.4
Q ss_pred CCe-ecccccccCCeeEEEEEeceEEEEEEccCCceEEEEEecCCcEEEEcCCcEEEEeeCCCCeEEEEEE
Q 018395 233 KAM-CSPGFSCDSALQVTYIVRGSGRAQIVGPDGKRVLETTVKAGNLFIVPRFYVVSKIADPDGLAWFSII 302 (356)
Q Consensus 233 g~~-~~PH~h~~~A~ei~~v~~G~~~~~iv~~~g~~~~~~~l~~Gdv~vvP~g~~h~~~~~~~~~~~~~~~ 302 (356)
.+| ..--+|.+ +++++|+-+|+++++ +.-| . -.+++||++|||+|..+.+.-. +++..+.+-
T Consensus 134 ~sM~~~~f~NaD-GD~Li~~q~G~l~l~--Te~G-~---L~v~pGd~~VIPRG~~~rv~l~-~p~rgyi~E 196 (424)
T PF04209_consen 134 ASMDDRAFRNAD-GDELIFPQQGSLRLE--TEFG-R---LDVRPGDYVVIPRGTRFRVELP-GPARGYIIE 196 (424)
T ss_dssp S---SEEEEESS-EEEEEEEEES-EEEE--ETTE-E---EEE-TTEEEEE-TT--EEEE-S-SSEEEEEEE
T ss_pred CCCCCcceEcCC-CCEEEEEEECCEEEE--ecCe-e---EEEcCCeEEEECCeeEEEEEeC-CCceEEEEE
Confidence 344 33445888 999999999998776 4444 2 2599999999999999887544 666666554
No 141
>PRK09685 DNA-binding transcriptional activator FeaR; Provisional
Probab=90.45 E-value=1.2 Score=42.11 Aligned_cols=65 Identities=11% Similarity=0.107 Sum_probs=44.1
Q ss_pred ceEEEEEEecCCCccc-----Ceee-CCCEEEEEEeCeEEEEEEcCCCceEEEEEcCCCEEEeCCCcEEEEEecCC
Q 018395 36 NIGAAKLALEKNGFAL-----PHYC-DSARVAYVLQGSGVAGIVLPEKEEKVVAIKKGDGIALPFGVVTWWYNKED 105 (356)
Q Consensus 36 ~~~~~~~~l~Pg~~~~-----pH~h-~a~e~~yVl~G~~~~~vv~~~~~~~~~~l~~GDv~~iP~G~~H~~~N~g~ 105 (356)
++.+..+...|..... .|.+ +.-.++++++|.+.+.. ++ ..+.+++||++++|++.+|.+.-.++
T Consensus 44 ~~~l~~~~~~~~~~~R~~~~i~~~~~~~~~l~~~~~G~~~~~~---~g--~~~~l~~G~~~l~~~~~p~~~~~~~~ 114 (302)
T PRK09685 44 GLKLSTVTTNAVNLSRTWQEIKHSDDAHFFTVFQLSGHAIIEQ---DD--RQVQLAAGDITLIDASRPCSIYPQGL 114 (302)
T ss_pred CEEEEEEecCCceEEeChHHhccCCCCcEEEEEEecceEEEEE---CC--eEEEEcCCCEEEEECCCCcEeecCCC
Confidence 4666777766653332 2222 33446678899998875 33 34899999999999999998765443
No 142
>COG3508 HmgA Homogentisate 1,2-dioxygenase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=90.44 E-value=2 Score=41.56 Aligned_cols=224 Identities=10% Similarity=0.034 Sum_probs=115.6
Q ss_pred CceEEEEEEecCCCcc-cCeee-CCCEEEEEEeCeEEEEEEcCCCceEEEEEcCCCEEEeCCCcEEEEEecCCCcEEEEE
Q 018395 35 GNIGAAKLALEKNGFA-LPHYC-DSARVAYVLQGSGVAGIVLPEKEEKVVAIKKGDGIALPFGVVTWWYNKEDTELVVLF 112 (356)
Q Consensus 35 ~~~~~~~~~l~Pg~~~-~pH~h-~a~e~~yVl~G~~~~~vv~~~~~~~~~~l~~GDv~~iP~G~~H~~~N~g~e~l~~l~ 112 (356)
.++.+..-.++. +|. ...++ +.++++|+.+|+.++.-. -| ..++++||..+||+|+...+.=.+.+ .+...
T Consensus 123 ~g~~i~~y~~n~-sm~~~~f~NADge~Livpq~G~l~l~te--~G---~l~v~pgeiavIPRG~~frve~~~~~-~rgy~ 195 (427)
T COG3508 123 DGVAIHVYKVNE-SMTKRFFRNADGELLIVPQQGELRLKTE--LG---VLEVEPGEIAVIPRGTTFRVELKDGE-ARGYG 195 (427)
T ss_pred CceEEEEEEccc-cchhhhhhcCCCCEEEEeecceEEEEEe--ec---eEEecCCcEEEeeCCceEEEEecCCc-eEEEE
Confidence 556555555544 444 45566 899999999999988532 22 37999999999999999988775544 33332
Q ss_pred EeeCC-CCCCCCceeEEeecccccccccCcHHHHHhhccCCHHHHHHhhcccCCceEEEcCCCCcC----CCCC-----c
Q 018395 113 LGDTS-KGHKAGEFTNFFLTGANGIFTGFSTEFVSRAWDLDENTVKTLVGKQTGKGIVKLDANAKL----PEPK-----K 182 (356)
Q Consensus 113 i~~~~-~~~~pg~~~~f~lag~~s~l~~~~~~vl~~af~~~~~~~~~l~~~q~~~~iv~~~~~~~~----~~p~-----~ 182 (356)
+-... ...-| +.=+-|++++.. |++ |.++..-.+. ++++-.+++|--.+... ..|- .
T Consensus 196 ~En~ga~~~lp----e~G~ig~n~lan--pRD-----f~tPvar~ed--~e~~~qlvvK~~g~l~~~e~~hsPlDVVaWh 262 (427)
T COG3508 196 CENYGAKFRLP----ELGPIGANGLAN--PRD-----FKTPVARYED--SEGPTQLVVKTHGGLWAVELDHSPLDVVAWH 262 (427)
T ss_pred Eeecccccccc----cccccccccccC--hhh-----ccCceeeecc--cCCCeEEEEEecCcEEEEecCCCCceeEeec
Confidence 22111 11111 111123323221 222 2222111111 22333466665443321 1232 1
Q ss_pred ccCCCceeeccCCCCC-ccc---CCCc-EEEEeCCCCCCCccccCce--eEEEEecCCCeecccccccCCeeEEEEEece
Q 018395 183 EHRDGMAFNCEEAPLD-VDI---KNGG-RVVLLNTKNLPLVGEVGCG--ADLVRLDGKAMCSPGFSCDSALQVTYIVRGS 255 (356)
Q Consensus 183 ~~~~~~~~~l~~~~~~-~~~---~~gG-~~~~~~~~~~p~l~~l~~s--~~~v~l~~g~~~~PH~h~~~A~ei~~v~~G~ 255 (356)
..-.+++|+|..-+|. ..+ ++-. ..+.+.+.+-|.....+.= --|....+++++.|.||-|-++|+...+.|.
T Consensus 263 Gnl~Pykydl~~f~pi~t~~~dhPdPSifTvltapsd~~g~~~cdFVifpprw~~~e~tfrppwyHrN~~sEfmgli~G~ 342 (427)
T COG3508 263 GNLAPYKYDLRDFNPIGTISYDHPDPSIFTVLTAPSDTPGFANCDFVIFPPRWLVAEQTFRPPWYHRNDMSEFMGLISGQ 342 (427)
T ss_pred CcccceEeeeeccccccceeccCCCCceEEEEecCCCCCCeeEEEEEecCchhcccccccCCCceecchHHHHHhHhhch
Confidence 2234567777754442 001 1111 1122222333443221100 0112346799999999999899999888885
Q ss_pred EEEEEEccCCceEEEEEecCCcEEEEcCCcEEE
Q 018395 256 GRAQIVGPDGKRVLETTVKAGNLFIVPRFYVVS 288 (356)
Q Consensus 256 ~~~~iv~~~g~~~~~~~l~~Gdv~vvP~g~~h~ 288 (356)
-.. + +.-+.+|++-.=+-++.|=
T Consensus 343 yda--------k--~~GfvpGg~sLH~~m~~HG 365 (427)
T COG3508 343 YDA--------K--AEGFVPGGASLHNCMSAHG 365 (427)
T ss_pred hhh--------h--ccCcCcCcceecccccccC
Confidence 311 1 1235677777777777774
No 143
>KOG2757 consensus Mannose-6-phosphate isomerase [Carbohydrate transport and metabolism]
Probab=90.19 E-value=1.5 Score=42.46 Aligned_cols=70 Identities=14% Similarity=0.251 Sum_probs=51.4
Q ss_pred ceeEEEEecCCCee-cccccccCCeeEEEEEeceEEEEEEccCCceEEEEEecCCcEEEEcCCcEEEEeeCCCCeEEEE
Q 018395 223 CGADLVRLDGKAMC-SPGFSCDSALQVTYIVRGSGRAQIVGPDGKRVLETTVKAGNLFIVPRFYVVSKIADPDGLAWFS 300 (356)
Q Consensus 223 ~s~~~v~l~~g~~~-~PH~h~~~A~ei~~v~~G~~~~~iv~~~g~~~~~~~l~~Gdv~vvP~g~~h~~~~~~~~~~~~~ 300 (356)
..+-.+++..|... -|-. + ...|..|++|++++.--+ +.. ..+++|||++||+.+...+.+.++.+..+-
T Consensus 333 F~v~~~~v~~g~~~~~~~~--~-~~SIllv~~G~g~l~~~t--~~~---~~v~rG~V~fI~a~~~i~~~~~sd~~~~yr 403 (411)
T KOG2757|consen 333 FAVLETKVPTGESYKFPGV--D-GPSILLVLKGSGILKTDT--DSK---ILVNRGDVLFIPANHPIHLSSSSDPFLGYR 403 (411)
T ss_pred eeEEEeecCCCceEEeecC--C-CceEEEEEecceEEecCC--CCc---eeeccCcEEEEcCCCCceeeccCcceeeee
Confidence 66777888887663 3444 2 457999999999887553 222 369999999999999988777777655443
No 144
>KOG3706 consensus Uncharacterized conserved protein [Function unknown]
Probab=90.16 E-value=0.21 Score=49.80 Aligned_cols=62 Identities=19% Similarity=0.225 Sum_probs=47.4
Q ss_pred EEEecC-CC-cccCeeeCCCEEEEEEeCeEEEEEEcCCC-------------------c-eEEEEEcCCCEEEeCCCcEE
Q 018395 41 KLALEK-NG-FALPHYCDSARVAYVLQGSGVAGIVLPEK-------------------E-EKVVAIKKGDGIALPFGVVT 98 (356)
Q Consensus 41 ~~~l~P-g~-~~~pH~h~a~e~~yVl~G~~~~~vv~~~~-------------------~-~~~~~l~~GDv~~iP~G~~H 98 (356)
-+.|.| |+ -+.|||-+-+.++.=++|+=...+..|.. + ....-|++||++|||.|++|
T Consensus 320 NvYLTPagSqGfaPHyDdIeaFvlQvEGrK~Wrly~P~~~~eel~l~sS~Nf~eedlgePV~e~vle~GDllYfPRG~IH 399 (629)
T KOG3706|consen 320 NVYLTPAGSQGFAPHYDDIEAFVLQVEGRKHWRLYHPTVPLEELALVSSDNFTEEDLGEPVHEFVLEPGDLLYFPRGTIH 399 (629)
T ss_pred ceeecCCCCCCCCCchhhhhhhhheeccceeeEeecCCCcHhhhhhccCCCCChhHhCCchHHhhcCCCcEEEecCccee
Confidence 344444 43 35899998888999999999998888752 0 12357999999999999999
Q ss_pred EEEe
Q 018395 99 WWYN 102 (356)
Q Consensus 99 ~~~N 102 (356)
....
T Consensus 400 QA~t 403 (629)
T KOG3706|consen 400 QADT 403 (629)
T ss_pred eccc
Confidence 8654
No 145
>PF06865 DUF1255: Protein of unknown function (DUF1255); InterPro: IPR009664 This family consists of several conserved hypothetical bacterial proteins of around 95 residues in length. The function of this family is unknown; PDB: 2OYZ_A 3HQX_A.
Probab=90.10 E-value=6.4 Score=30.93 Aligned_cols=69 Identities=12% Similarity=0.033 Sum_probs=47.0
Q ss_pred eEEEEEEecCCCcccCeee-CCCEEEEEEeCeEEEEEEcCCCceEEEEEcCCCEEEeCCCcEEEEEecCCCcEEEEEE
Q 018395 37 IGAAKLALEKNGFALPHYC-DSARVAYVLQGSGVAGIVLPEKEEKVVAIKKGDGIALPFGVVTWWYNKEDTELVVLFL 113 (356)
Q Consensus 37 ~~~~~~~l~Pg~~~~pH~h-~a~e~~yVl~G~~~~~vv~~~~~~~~~~l~~GDv~~iP~G~~H~~~N~g~e~l~~l~i 113 (356)
-......|.||- -++. .+.|+.-|++|...+.+ |+..+. ...++|+.|.+|++...-+.-. +....+|-
T Consensus 23 ~~~TlGVm~pGe---Y~F~T~~~E~M~vvsG~l~V~l--pg~~ew-~~~~aGesF~VpanssF~v~v~--~~~~Y~C~ 92 (94)
T PF06865_consen 23 SKKTLGVMLPGE---YTFGTSAPERMEVVSGELEVKL--PGEDEW-QTYSAGESFEVPANSSFDVKVK--EPTAYLCS 92 (94)
T ss_dssp EEEEEEEE-SEC---EEEEESS-EEEEEEESEEEEEE--TT-SS--EEEETT-EEEE-TTEEEEEEES--S-EEEEEE
T ss_pred CcceEEEEeeeE---EEEcCCCCEEEEEEEeEEEEEc--CCCccc-EEeCCCCeEEECCCCeEEEEEC--cceeeEEE
Confidence 344566777776 3455 89999999999999986 333223 6899999999999999988765 34666664
No 146
>PRK09391 fixK transcriptional regulator FixK; Provisional
Probab=89.87 E-value=2.2 Score=38.76 Aligned_cols=63 Identities=16% Similarity=0.089 Sum_probs=48.1
Q ss_pred CceEEEEEEecCCCcccCeeeCCCEEEEEEeCeEEEEEEcCCCceEE-EEEcCCCEEEeCCCcE
Q 018395 35 GNIGAAKLALEKNGFALPHYCDSARVAYVLQGSGVAGIVLPEKEEKV-VAIKKGDGIALPFGVV 97 (356)
Q Consensus 35 ~~~~~~~~~l~Pg~~~~pH~h~a~e~~yVl~G~~~~~vv~~~~~~~~-~~l~~GDv~~iP~G~~ 97 (356)
....+...++++|..+...-...+.+++|++|...+...+++|++.. .-+.+||++-...+.+
T Consensus 34 ~~~~~~~~~~~kge~l~~~Gd~~~~ly~I~~G~vkl~~~~~~G~e~i~~~~~~Gd~fG~~~~~~ 97 (230)
T PRK09391 34 AGLVASEFSYKKGEEIYGEGEPADYVYQVESGAVRTYRLLSDGRRQIGAFHLPGDVFGLESGST 97 (230)
T ss_pred ccceeeeEEECCCCEEECCCCCCCeEEEEEeCEEEEEEECCCCcEEEEEEecCCceecccCCCc
Confidence 45667788999988665554478889999999999998888877653 4558999887665543
No 147
>PRK05341 homogentisate 1,2-dioxygenase; Provisional
Probab=89.59 E-value=2.9 Score=41.81 Aligned_cols=73 Identities=15% Similarity=0.090 Sum_probs=50.3
Q ss_pred CceeEEEEecCCCe-ecccccccCCeeEEEEEeceEEEEEEccCCceEEEEEecCCcEEEEcCCcEEEEeeCCCCeEEEE
Q 018395 222 GCGADLVRLDGKAM-CSPGFSCDSALQVTYIVRGSGRAQIVGPDGKRVLETTVKAGNLFIVPRFYVVSKIADPDGLAWFS 300 (356)
Q Consensus 222 ~~s~~~v~l~~g~~-~~PH~h~~~A~ei~~v~~G~~~~~iv~~~g~~~~~~~l~~Gdv~vvP~g~~h~~~~~~~~~~~~~ 300 (356)
|+++.....+. +| ..--.|.+ +.+++|+-+|+++++ ++-|. -++++||+.|||+|..+.+.-.+.++..+.
T Consensus 132 G~ai~~y~~n~-sM~~~~f~NaD-GD~Livpq~G~l~i~--TEfG~----L~v~pgei~VIPRG~~frv~l~~gp~rgyi 203 (438)
T PRK05341 132 GMAIHLYAANR-SMQDRYFYNAD-GELLIVPQQGRLRLA--TELGV----LDVEPGEIAVIPRGVKFRVELPDGPARGYV 203 (438)
T ss_pred ccEEEEEeCCC-CcccceeecCC-CCEEEEEEeCCEEEE--Eeccc----eEecCCCEEEEcCccEEEEecCCCCeeEEE
Confidence 44444433333 55 45566888 999999999999776 33442 268999999999999988764445555554
Q ss_pred EE
Q 018395 301 II 302 (356)
Q Consensus 301 ~~ 302 (356)
+-
T Consensus 204 ~E 205 (438)
T PRK05341 204 CE 205 (438)
T ss_pred EE
Confidence 43
No 148
>PLN02288 mannose-6-phosphate isomerase
Probab=89.58 E-value=0.97 Score=44.90 Aligned_cols=60 Identities=20% Similarity=0.246 Sum_probs=43.2
Q ss_pred CceEEEEEEecCCCcccCeeeCCCEEEEEEeCeEEEEEEcCCCceEEEEEcCCCEEEeCCCcE
Q 018395 35 GNIGAAKLALEKNGFALPHYCDSARVAYVLQGSGVAGIVLPEKEEKVVAIKKGDGIALPFGVV 97 (356)
Q Consensus 35 ~~~~~~~~~l~Pg~~~~pH~h~a~e~~yVl~G~~~~~vv~~~~~~~~~~l~~GDv~~iP~G~~ 97 (356)
..+.+.++++.++......-.++.++++|++|++++.. ++...+..|++|+++++|++..
T Consensus 332 ~eF~v~~~~l~~~~~~~~~~~~gp~Illv~~G~~~i~~---~~~~~~~~l~~G~~~fv~a~~~ 391 (394)
T PLN02288 332 DEFEVDHCDVPPGASVVFPAVPGPSVFLVIEGEGVLST---GSSEDGTAAKRGDVFFVPAGTE 391 (394)
T ss_pred cceEEEEEEeCCCCeEeecCCCCCEEEEEEcCEEEEec---CCccceEEEeceeEEEEeCCCc
Confidence 46788888998876422222478899999999999853 2222235799999999999754
No 149
>COG2850 Uncharacterized conserved protein [Function unknown]
Probab=89.25 E-value=0.71 Score=44.87 Aligned_cols=72 Identities=17% Similarity=0.093 Sum_probs=47.1
Q ss_pred CCcccCceEEEEEEecCCCcccCeeeCCCEEEEEEeCeEEEEEEcCCC-----------------ceEEEEEcCCCEEEe
Q 018395 30 PMLRQGNIGAAKLALEKNGFALPHYCDSARVAYVLQGSGVAGIVLPEK-----------------EEKVVAIKKGDGIAL 92 (356)
Q Consensus 30 p~l~~~~~~~~~~~l~Pg~~~~pH~h~a~e~~yVl~G~~~~~vv~~~~-----------------~~~~~~l~~GDv~~i 92 (356)
|..+..++ ..--..||+-+.|||-..+-+++=..|+=+-.+-...+ -.....+++||++||
T Consensus 114 P~wr~ddi--MIS~a~~GGgvg~H~D~YDVfliQg~G~RRW~v~~~~~~~~~~~~~d~~~~~~f~~~~d~vlepGDiLYi 191 (383)
T COG2850 114 PDWRIDDI--MISFAAPGGGVGPHFDQYDVFLIQGQGRRRWRVGKKCNMSTLCPHPDLLILAPFEPDIDEVLEPGDILYI 191 (383)
T ss_pred ccccccce--EEEEecCCCccCccccchheeEEeecccceeecCCcccccCcCCCcchhhcCCCCchhhhhcCCCceeec
Confidence 44444444 23378899999999976655544444555555432210 012357899999999
Q ss_pred CCCcEEEEEec
Q 018395 93 PFGVVTWWYNK 103 (356)
Q Consensus 93 P~G~~H~~~N~ 103 (356)
|+|++|+-+..
T Consensus 192 Pp~~~H~gvae 202 (383)
T COG2850 192 PPGFPHYGVAE 202 (383)
T ss_pred CCCCCcCCccc
Confidence 99999998876
No 150
>PF09313 DUF1971: Domain of unknown function (DUF1971); InterPro: IPR015392 This uncharacterised domain is predominantly found in bacterial Tellurite resistance proteins. ; PDB: 3BB6_C 3M70_A 3DL3_I.
Probab=88.67 E-value=5.5 Score=30.48 Aligned_cols=61 Identities=18% Similarity=-0.008 Sum_probs=43.7
Q ss_pred CCCcccCeeeCCCEE--EEEEeCeEEEEEEcCCCc--eEEEEEcCCCEEEeCCCcEEEEEecCCC
Q 018395 46 KNGFALPHYCDSARV--AYVLQGSGVAGIVLPEKE--EKVVAIKKGDGIALPFGVVTWWYNKEDT 106 (356)
Q Consensus 46 Pg~~~~pH~h~a~e~--~yVl~G~~~~~vv~~~~~--~~~~~l~~GDv~~iP~G~~H~~~N~g~e 106 (356)
|-++...|...+..| +-|++|+..+...++++. ....-+++|+..+|++...|.+.-.++.
T Consensus 12 P~~l~~~H~TK~GtWg~l~Vl~G~L~f~~~~~~~~~~~~~~~~~~~~~~~i~Pq~wH~V~p~s~D 76 (82)
T PF09313_consen 12 PAALLERHNTKAGTWGKLRVLEGELKFYGLDEEGEEPEEEVFIPAGQPPVIEPQQWHRVEPLSDD 76 (82)
T ss_dssp -GGGGSSBCCSTTEEEEEEEEESEEEEEEESSTT-SESEEEEEETTEEEEE-TT-EEEEEESSTT
T ss_pred cHHHHhhcCCCCCeEEEEEEEeeEEEEEEECCCCCceeEEEEeCCCCCceeCCCceEEEEECCCC
Confidence 445667776655554 569999999999887643 2346889999999999999999876653
No 151
>PF13464 DUF4115: Domain of unknown function (DUF4115)
Probab=88.59 E-value=3.2 Score=31.00 Aligned_cols=53 Identities=17% Similarity=0.162 Sum_probs=44.6
Q ss_pred EEEeceEEEEEEccCCceEEEEEecCCcEEEEcCCcEEEEeeCCCCeEEEEEE
Q 018395 250 YIVRGSGRAQIVGPDGKRVLETTVKAGNLFIVPRFYVVSKIADPDGLAWFSII 302 (356)
Q Consensus 250 ~v~~G~~~~~iv~~~g~~~~~~~l~~Gdv~vvP~g~~h~~~~~~~~~~~~~~~ 302 (356)
+-..|...++|.+.+|+.+++..+++||..-++..-+..+..|+-+..-+.++
T Consensus 3 l~a~~~sWv~V~d~dG~~~~~~~l~~G~~~~~~~~~~~~i~iGna~~v~v~~n 55 (77)
T PF13464_consen 3 LTATGDSWVEVTDADGKVLFSGTLKAGETKTFEGKEPFRIRIGNAGAVEVTVN 55 (77)
T ss_pred EEEeCCeEEEEEeCCCcEeeeeeeCCCcEEEEeCCCCEEEEEeCCCcEEEEEC
Confidence 34568999999999999999999999999999888888888887766666654
No 152
>PF13759 2OG-FeII_Oxy_5: Putative 2OG-Fe(II) oxygenase; PDB: 3BVC_B 2RG4_A.
Probab=88.58 E-value=2 Score=33.86 Aligned_cols=65 Identities=26% Similarity=0.290 Sum_probs=34.5
Q ss_pred EEEecCCCcccCeee-CC--CEEEEEE--eCeEEEEEEcCCC------------------ceEEEEEcCCCEEEeCCCcE
Q 018395 41 KLALEKNGFALPHYC-DS--ARVAYVL--QGSGVAGIVLPEK------------------EEKVVAIKKGDGIALPFGVV 97 (356)
Q Consensus 41 ~~~l~Pg~~~~pH~h-~a--~e~~yVl--~G~~~~~vv~~~~------------------~~~~~~l~~GDv~~iP~G~~ 97 (356)
....++|+...+|.| ++ .-++||- ++.+.+.+.++.. .....+.++||+++||+-..
T Consensus 4 ~ni~~~g~~~~~H~H~~s~~SgVyYv~~p~~~~~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~G~lvlFPs~l~ 83 (101)
T PF13759_consen 4 ANIYRKGGYNEPHNHPNSWLSGVYYVQVPEGSGPLRFHDPRGSFSFGAPFDNYDQNDLNSPYYIVEPEEGDLVLFPSWLW 83 (101)
T ss_dssp EEEE-TT--EEEE--TT-SEEEEEECE--TTS-SEEEE-TTCCCGTTS----TTTTCCC-SEEEE---TTEEEEEETTSE
T ss_pred EEEeCCCCccCceECCCcCEEEEEEEECCCCCCceeeeCCCccceecccccccccCcccCceEEeCCCCCEEEEeCCCCE
Confidence 345678999999999 44 3455654 3444455555431 23456889999999999999
Q ss_pred EEEEe-cCC
Q 018395 98 TWWYN-KED 105 (356)
Q Consensus 98 H~~~N-~g~ 105 (356)
|+..- .++
T Consensus 84 H~v~p~~~~ 92 (101)
T PF13759_consen 84 HGVPPNNSD 92 (101)
T ss_dssp EEE----SS
T ss_pred EeccCcCCC
Confidence 99864 444
No 153
>PF07847 DUF1637: Protein of unknown function (DUF1637); InterPro: IPR012864 This entry represents cysteamine dioxygenase, which is a non-heme iron protein that is involved in the biosynthesis of taurine. Requires catalytic amounts of a cofactor-like compound, such as sulphur, sulphide, selenium or methylene blue for maximal activity. 3-Aminopropanethiol (homocysteamine) and 2-mercaptoethanol can also act as substrates, but glutathione, cysteine, and cysteine ethyl- and methyl esters are not good substrates [, ]. ; GO: 0047800 cysteamine dioxygenase activity, 0055114 oxidation-reduction process
Probab=88.44 E-value=2.8 Score=37.70 Aligned_cols=97 Identities=10% Similarity=0.052 Sum_probs=67.3
Q ss_pred cccCceEEEEEEecCCCcccCeee-CCCEEEEEEeCeEEEEEEcCCC----------ceEEEE------E-cCCC-EEEe
Q 018395 32 LRQGNIGAAKLALEKNGFALPHYC-DSARVAYVLQGSGVAGIVLPEK----------EEKVVA------I-KKGD-GIAL 92 (356)
Q Consensus 32 l~~~~~~~~~~~l~Pg~~~~pH~h-~a~e~~yVl~G~~~~~vv~~~~----------~~~~~~------l-~~GD-v~~i 92 (356)
..+..+++..+-|+||+.+++|=| .-.-+.-||.|+..+.-++--. .....+ + .+++ .+..
T Consensus 39 yE~~~fsi~iF~lp~g~~IPLHDHP~M~v~sKvL~Gs~~v~Syd~~~~~~~~~~~~~~~~~a~~~~d~~~~a~~~~~vL~ 118 (200)
T PF07847_consen 39 YEDEDFSIGIFCLPPGAVIPLHDHPGMTVLSKVLYGSLHVKSYDWVDEPSDSIEGQRQPRLARLVVDGEMTAPSDTCVLY 118 (200)
T ss_pred EECCCcEEEEEEeCCCCEeCCCCCCchHhhHhhEeeeEEEEEccccccccccccccccceeeEEEecceecCCCCCeEEc
Confidence 355688999999999999999999 7777777999999998766221 000111 2 2223 5556
Q ss_pred CCC--cEEEEEecCCCcEEEEEEeeCCCCCCCCceeEEe
Q 018395 93 PFG--VVTWWYNKEDTELVVLFLGDTSKGHKAGEFTNFF 129 (356)
Q Consensus 93 P~G--~~H~~~N~g~e~l~~l~i~~~~~~~~pg~~~~f~ 129 (356)
|.. -.|++.+.+ +++.|+-|+.+.-..+.|+--.||
T Consensus 119 P~~ggNiH~f~a~~-~p~AflDIL~PPY~~~~gR~C~YY 156 (200)
T PF07847_consen 119 PTSGGNIHEFTALT-GPCAFLDILAPPYDPDDGRDCTYY 156 (200)
T ss_pred cCCCCeeEEEEeCC-CCeEEEEEccCCCCCCCCCCcEEE
Confidence 664 899999987 789999888754223455555555
No 154
>PRK10579 hypothetical protein; Provisional
Probab=88.39 E-value=6.4 Score=30.87 Aligned_cols=65 Identities=11% Similarity=0.045 Sum_probs=48.2
Q ss_pred EEEEecCCCcccCeee-CCCEEEEEEeCeEEEEEEcCCCceEEEEEcCCCEEEeCCCcEEEEEecCCCcEEEEE
Q 018395 40 AKLALEKNGFALPHYC-DSARVAYVLQGSGVAGIVLPEKEEKVVAIKKGDGIALPFGVVTWWYNKEDTELVVLF 112 (356)
Q Consensus 40 ~~~~l~Pg~~~~pH~h-~a~e~~yVl~G~~~~~vv~~~~~~~~~~l~~GDv~~iP~G~~H~~~N~g~e~l~~l~ 112 (356)
....+.||. -++. .+.|+.-|++|++.+.+ |+..+. ...++|+.|.+|++...-+.... ....+|
T Consensus 26 TlGVm~pGe---y~F~T~~~E~MeivsG~l~V~L--pg~~ew-~~~~aG~sF~VpanssF~l~v~~--~t~Y~C 91 (94)
T PRK10579 26 SVGVMAEGE---YTFSTAEPEEMTVISGALNVLL--PGATDW-QVYEAGEVFNVPGHSEFHLQVAE--PTSYLC 91 (94)
T ss_pred EEEEEeeeE---EEEcCCCcEEEEEEeeEEEEEC--CCCccc-EEeCCCCEEEECCCCeEEEEECc--ceeeEE
Confidence 345566766 3444 89999999999999976 333223 69999999999999998887643 355665
No 155
>COG1741 Pirin-related protein [General function prediction only]
Probab=88.37 E-value=1.6 Score=41.27 Aligned_cols=71 Identities=24% Similarity=0.095 Sum_probs=52.6
Q ss_pred EEEecCCCcccCeee-CCCEEEEEEeCeEEEEEEcCCCceEEEEEcCCCEEEeCCC--cEEEEEec--CCCcEEEEEEee
Q 018395 41 KLALEKNGFALPHYC-DSARVAYVLQGSGVAGIVLPEKEEKVVAIKKGDGIALPFG--VVTWWYNK--EDTELVVLFLGD 115 (356)
Q Consensus 41 ~~~l~Pg~~~~pH~h-~a~e~~yVl~G~~~~~vv~~~~~~~~~~l~~GDv~~iP~G--~~H~~~N~--g~e~l~~l~i~~ 115 (356)
...+.||.-+.||-| .-+-+-||++|+.+-. +..|.. ..+++||+-.+=+| +.|.-.|. .+.++..+-+..
T Consensus 48 ~~~~~pG~~f~pHPHrg~etvTyvl~G~i~Hr--DS~Gn~--~~i~pGdvqwMTAG~GI~HSE~~~~~~~~~l~~~QlWv 123 (276)
T COG1741 48 PDVLAPGRGFPPHPHRGLETVTYVLDGEIEHR--DSLGNK--GVIRPGDVQWMTAGSGIVHSEMNPPSTGKPLHGLQLWV 123 (276)
T ss_pred cccccCCCcCCCCCCCCcEEEEEEEccEEEEe--ecCCce--eeecccceeEEcCCCceeecccCCccCCCccceeeeec
Confidence 446899999999999 7777899999998775 444432 68999999998887 67877775 333455554443
No 156
>PF07385 DUF1498: Protein of unknown function (DUF1498); InterPro: IPR010864 This family consists of several hypothetical bacterial proteins of around 225 residues in length. The function of this family is unknown.; PDB: 3MPB_B 3KMH_A.
Probab=87.44 E-value=7.4 Score=35.39 Aligned_cols=78 Identities=13% Similarity=0.232 Sum_probs=45.9
Q ss_pred ceEEEEEEecCCCcccCeee-CCCEEEEEE-eCeEEEEEEcCC--C--------------ce------EEEEEcCCCEEE
Q 018395 36 NIGAAKLALEKNGFALPHYC-DSARVAYVL-QGSGVAGIVLPE--K--------------EE------KVVAIKKGDGIA 91 (356)
Q Consensus 36 ~~~~~~~~l~Pg~~~~pH~h-~a~e~~yVl-~G~~~~~vv~~~--~--------------~~------~~~~l~~GDv~~ 91 (356)
-++=..+.+.+|...+.|+| .-.|=++.- -|+..+.+...+ + .. ....|.||+.+-
T Consensus 86 ~YAEKim~~~~~Q~tP~H~H~~K~EDIINRGGG~L~i~l~~s~~~~~~~~~~~v~V~~DG~~~t~~aG~~l~L~PGESiT 165 (225)
T PF07385_consen 86 PYAEKIMIVREGQVTPMHFHWKKMEDIINRGGGNLVIELYNSDPDGELDADTDVTVPVDGIRRTVPAGTQLRLNPGESIT 165 (225)
T ss_dssp -EEEEEEEE-BT-EEEEEEESS--EEEEEEEES-EEEEEEEB--TTSSB-SS-EEEEETTEEEEE-TT-EEEE-TT-EEE
T ss_pred cchhhheeccCCCcCCcccCcchhhheeecCCceEEEEEEeccCCCccccCCCeEEecCCcEEEecCCceEEeCCCCeEe
Confidence 35556788999999999999 555544444 357777776643 1 11 236899999999
Q ss_pred eCCCcEEEEEecCCCcEEEEEEee
Q 018395 92 LPFGVVTWWYNKEDTELVVLFLGD 115 (356)
Q Consensus 92 iP~G~~H~~~N~g~e~l~~l~i~~ 115 (356)
+++|.-|+++..+.. +++.=..
T Consensus 166 L~Pg~yH~Fw~e~g~--vLigEVS 187 (225)
T PF07385_consen 166 LPPGIYHWFWGEGGD--VLIGEVS 187 (225)
T ss_dssp E-TTEEEEEEE-TTS--EEEEEEE
T ss_pred eCCCCeeeEEecCCC--EEEEeee
Confidence 999999999986544 4444333
No 157
>TIGR00218 manA mannose-6-phosphate isomerase, class I. The names phosphomannose isomerase and mannose-6-phosphate isomerase are synonomous. This family contains two rather deeply branched groups. One group contains an experimentally determined phosphomannose isomerase of Streptococcus mutans as well as three uncharacterized paralogous proteins of Bacillus subtilis, all at more than 50 % identity to each other, plus a more distant homolog from Archaeoglobus fulgidus. The other group contains members from E. coli, budding yeast, Borrelia burgdorferi, etc.
Probab=87.41 E-value=3.5 Score=39.43 Aligned_cols=61 Identities=21% Similarity=0.206 Sum_probs=43.7
Q ss_pred cCceEEEEEEecCCCcccCeeeCCCEEEEEEeCeEEEEEEcCCCceEEEEEcCCCEEEeCCCcEEEEE
Q 018395 34 QGNIGAAKLALEKNGFALPHYCDSARVAYVLQGSGVAGIVLPEKEEKVVAIKKGDGIALPFGVVTWWY 101 (356)
Q Consensus 34 ~~~~~~~~~~l~Pg~~~~pH~h~a~e~~yVl~G~~~~~vv~~~~~~~~~~l~~GDv~~iP~G~~H~~~ 101 (356)
...+.+.++++.... ...-.+...+++|++|++++.. ++ ....|++|+++++|++...+..
T Consensus 232 ~~~F~~~~~~~~~~~--~~~~~~~~~il~v~~G~~~i~~---~~--~~~~l~~G~~~~ipa~~~~~~i 292 (302)
T TIGR00218 232 TEYFSVYKWDISGKA--EFIQQQSALILSVLEGSGRIKS---GG--KTLPLKKGESFFIPAHLGPFTI 292 (302)
T ss_pred CCCeEEEEEEeCCce--eeccCCCcEEEEEEcceEEEEE---CC--EEEEEecccEEEEccCCccEEE
Confidence 346777888876542 1111267889999999999853 22 3478999999999999866555
No 158
>PF06172 Cupin_5: Cupin superfamily (DUF985); InterPro: IPR009327 This is a family of uncharacterised proteins found in bacteria and eukaryotes.; PDB: 1ZNP_G 1XE8_B 1XE7_A 3M3I_F 3LOI_A 3LZZ_B 1YUD_D.
Probab=86.87 E-value=14 Score=31.14 Aligned_cols=97 Identities=12% Similarity=0.086 Sum_probs=59.6
Q ss_pred CCcEEEEeCCCCCCCcc------ccCceeEEEEecCCCeecccccccCCeeEEEEEec-eEEEEEEccCCceEEEE----
Q 018395 203 NGGRVVLLNTKNLPLVG------EVGCGADLVRLDGKAMCSPGFSCDSALQVTYIVRG-SGRAQIVGPDGKRVLET---- 271 (356)
Q Consensus 203 ~gG~~~~~~~~~~p~l~------~l~~s~~~v~l~~g~~~~PH~h~~~A~ei~~v~~G-~~~~~iv~~~g~~~~~~---- 271 (356)
.||+.++.......... ...++.-..-|.++.+. |||...++|+-+...| ..++-+++|+|+-. ..
T Consensus 15 EGG~fret~rs~~~~~~~~~~~~R~~~T~Iy~LL~~~~~S--~~Hrv~sdEiw~~~~G~pl~l~~i~~dg~~~-~~~LG~ 91 (139)
T PF06172_consen 15 EGGYFRETYRSPETVSPPSLGPSRSASTSIYYLLTPGEFS--AWHRVDSDEIWHFHAGDPLELHLIDPDGSYE-TVVLGP 91 (139)
T ss_dssp TSSEEEEEEE-SSEEECCTCSSCEES-EEEEEEEETTBEE--EEEEESSEEEEEEEEES-EEEEEECTTSTEE-EEEESS
T ss_pred CCccEEEEEECCCcccCCCCCCCcccceEEEEEEcCCCCC--ccEEcCCCEEEEEEcCCCEEEEEEcCCCCeE-EEEECC
Confidence 46666555544332221 12345555568888887 6666338999999998 78999999998542 22
Q ss_pred EecCCc--EEEEcCCcEEEEe-eCCCCeEEEEEE
Q 018395 272 TVKAGN--LFIVPRFYVVSKI-ADPDGLAWFSII 302 (356)
Q Consensus 272 ~l~~Gd--v~vvP~g~~h~~~-~~~~~~~~~~~~ 302 (356)
++.+|+ .++||+|.+..-. .+..+..+++..
T Consensus 92 d~~~g~~~q~vVp~G~W~aa~l~~~~~y~Lvsc~ 125 (139)
T PF06172_consen 92 DLAAGERPQVVVPAGTWQAAELEPEGDYSLVSCT 125 (139)
T ss_dssp TTCTTEBSEEEE-TTSEEEEEECESSSEEEEEEE
T ss_pred CCCCCceEEEEECCCEEEEccccCCCCEEEEEEE
Confidence 334554 5799999998763 344566666554
No 159
>PF11142 DUF2917: Protein of unknown function (DUF2917); InterPro: IPR021317 This bacterial family of proteins appears to be restricted to Proteobacteria.
Probab=86.68 E-value=2.8 Score=30.32 Aligned_cols=57 Identities=14% Similarity=-0.005 Sum_probs=42.0
Q ss_pred EEecCCCcccCeeeCCCEEEEEEeCeEEEEEEcCCCceEEEEEcCCCEEEeCCCcEEEEEe
Q 018395 42 LALEKNGFALPHYCDSARVAYVLQGSGVAGIVLPEKEEKVVAIKKGDGIALPFGVVTWWYN 102 (356)
Q Consensus 42 ~~l~Pg~~~~pH~h~a~e~~yVl~G~~~~~vv~~~~~~~~~~l~~GDv~~iP~G~~H~~~N 102 (356)
.+|.||.....+-..+. .+-|.+|+.-++. ++....+-|++||.+.+++|.--++..
T Consensus 2 ~~L~~g~~~~lr~~~~~-~l~v~~G~vWlT~---~g~~~D~~L~~G~~l~l~~g~~vvl~a 58 (63)
T PF11142_consen 2 FELAPGETLSLRAAAGQ-RLRVESGRVWLTR---EGDPDDYWLQAGDSLRLRRGGRVVLSA 58 (63)
T ss_pred EEeCCCceEEeEcCCCc-EEEEccccEEEEC---CCCCCCEEECCCCEEEeCCCCEEEEEe
Confidence 46777776665544443 4889999988875 333456899999999999998877654
No 160
>PLN02658 homogentisate 1,2-dioxygenase
Probab=86.26 E-value=5.5 Score=39.86 Aligned_cols=72 Identities=14% Similarity=0.124 Sum_probs=49.2
Q ss_pred CceeEEEEecCCCe-ecccccccCCeeEEEEEeceEEEEEEccCCceEEEEEecCCcEEEEcCCcEEEEeeCCCCeEEEE
Q 018395 222 GCGADLVRLDGKAM-CSPGFSCDSALQVTYIVRGSGRAQIVGPDGKRVLETTVKAGNLFIVPRFYVVSKIADPDGLAWFS 300 (356)
Q Consensus 222 ~~s~~~v~l~~g~~-~~PH~h~~~A~ei~~v~~G~~~~~iv~~~g~~~~~~~l~~Gdv~vvP~g~~h~~~~~~~~~~~~~ 300 (356)
||++.....+. +| ..--.|.+ +.+++|+-+|+++++ +.-|. -.+++||+.|||+|..+.+.-.+.++..+.
T Consensus 125 G~ai~iy~~n~-sM~~~~f~NaD-GD~Livpq~G~l~i~--TEfG~----L~v~pgei~VIPRG~~frv~l~~gp~rgyv 196 (435)
T PLN02658 125 GYAIHMYVANK-SMDDCAFCNAD-GDFLIVPQQGRLWIK--TELGK----LQVSPGEIVVIPRGFRFAVDLPDGPSRGYV 196 (435)
T ss_pred CcEEEEEeCCC-CCccceeecCC-CCEEEEEEeCCEEEE--Eeccc----eEecCCCEEEecCccEEEEecCCCCeeEEE
Confidence 44444333333 45 34467888 999999999998776 33442 268999999999999988754444555554
Q ss_pred E
Q 018395 301 I 301 (356)
Q Consensus 301 ~ 301 (356)
+
T Consensus 197 ~ 197 (435)
T PLN02658 197 L 197 (435)
T ss_pred E
Confidence 4
No 161
>TIGR01015 hmgA homogentisate 1,2-dioxygenase. Missing in human disease alkaptonuria.
Probab=85.24 E-value=6.4 Score=39.32 Aligned_cols=71 Identities=11% Similarity=0.084 Sum_probs=48.5
Q ss_pred CceeEEEEecCCCe-ecccccccCCeeEEEEEeceEEEEEEccCCceEEEEEecCCcEEEEcCCcEEEEeeCCCCeEEEE
Q 018395 222 GCGADLVRLDGKAM-CSPGFSCDSALQVTYIVRGSGRAQIVGPDGKRVLETTVKAGNLFIVPRFYVVSKIADPDGLAWFS 300 (356)
Q Consensus 222 ~~s~~~v~l~~g~~-~~PH~h~~~A~ei~~v~~G~~~~~iv~~~g~~~~~~~l~~Gdv~vvP~g~~h~~~~~~~~~~~~~ 300 (356)
|+++.....+. +| ..--.|.+ +.+++|+-+|+++++ ++-|. -.+++||+.|||+|..+.+.-. +++..+.
T Consensus 126 G~ai~iy~~~~-sM~~~~f~NaD-GD~Livpq~G~l~i~--TEfG~----L~v~pgei~VIPRG~~frv~l~-gp~rgyi 196 (429)
T TIGR01015 126 GLAIHIYLCNA-SMENRAFYNAD-GDFLIVPQQGALLIT--TEFGR----LLVEPNEICVIPRGVRFRVTVL-EPARGYI 196 (429)
T ss_pred CceEEEEeCCC-CcccceeeccC-CCEEEEEEeCcEEEE--Eeccc----eEecCCCEEEecCccEEEEeeC-CCceEEE
Confidence 44444333333 56 45566888 999999999998766 33442 2699999999999999887542 3555544
Q ss_pred E
Q 018395 301 I 301 (356)
Q Consensus 301 ~ 301 (356)
+
T Consensus 197 ~ 197 (429)
T TIGR01015 197 C 197 (429)
T ss_pred E
Confidence 4
No 162
>COG3718 IolB Uncharacterized enzyme involved in inositol metabolism [Carbohydrate transport and metabolism]
Probab=84.40 E-value=12 Score=34.38 Aligned_cols=88 Identities=17% Similarity=0.124 Sum_probs=64.4
Q ss_pred CCCeEEEEeCCCCCCCcccCceEEEEEEecCCCcccCeeeCCCEEEEEEeCeEEEEEEcCC-----CceEEEEEcCCCEE
Q 018395 16 GNGGSYHAWCPNELPMLRQGNIGAAKLALEKNGFALPHYCDSARVAYVLQGSGVAGIVLPE-----KEEKVVAIKKGDGI 90 (356)
Q Consensus 16 ~~~G~i~~~~~~~~p~l~~~~~~~~~~~l~Pg~~~~pH~h~a~e~~yVl~G~~~~~vv~~~-----~~~~~~~l~~GDv~ 90 (356)
...|.+..+++.+ +.+. -+++...+|.+|.....-.-+-+.++++++|++.+..-... .+...++=++=|++
T Consensus 11 ~~~g~v~~vtp~s-agw~--YVGF~~~~L~~Ges~~~~~~~~E~clV~v~Gk~~vs~~g~~f~~iG~R~SvFe~~p~~~v 87 (270)
T COG3718 11 AGVGLVQDVTPES-AGWE--YVGFRLLRLAAGESATEETGDRERCLVLVTGKATVSAHGSTFGEIGTRMSVFERKPPDSV 87 (270)
T ss_pred CCCcceEEecCCC-CCce--eEEEEEEEccCCCcccccCCCceEEEEEEeeeEEEeeccchHhhcccccccccCCCCCeE
Confidence 3567888777654 3343 46778899999998777666777788899999999753211 23344566678999
Q ss_pred EeCCCcEEEEEecCCC
Q 018395 91 ALPFGVVTWWYNKEDT 106 (356)
Q Consensus 91 ~iP~G~~H~~~N~g~e 106 (356)
|+|.|....+...++-
T Consensus 88 Yvp~g~~~~vtA~t~~ 103 (270)
T COG3718 88 YVPAGSAFSVTATTDL 103 (270)
T ss_pred EecCCceEEEEeecce
Confidence 9999999999887654
No 163
>PRK09391 fixK transcriptional regulator FixK; Provisional
Probab=83.73 E-value=10 Score=34.35 Aligned_cols=79 Identities=16% Similarity=-0.019 Sum_probs=55.3
Q ss_pred cCceeEEEEecCCCeecccccccCCeeEEEEEeceEEEEEEccCCceEEEEEecCCcEEEEcCCcEEEEee-CCCCeEEE
Q 018395 221 VGCGADLVRLDGKAMCSPGFSCDSALQVTYIVRGSGRAQIVGPDGKRVLETTVKAGNLFIVPRFYVVSKIA-DPDGLAWF 299 (356)
Q Consensus 221 l~~s~~~v~l~~g~~~~PH~h~~~A~ei~~v~~G~~~~~iv~~~g~~~~~~~l~~Gdv~vvP~g~~h~~~~-~~~~~~~~ 299 (356)
++..+....+.+|-+.--.=. . +..+.+|++|.+++...+++|+..+-.-+.+||+|=...+.++...+ -.++++++
T Consensus 34 ~~~~~~~~~~~kge~l~~~Gd-~-~~~ly~I~~G~vkl~~~~~~G~e~i~~~~~~Gd~fG~~~~~~~~~~~~A~~ds~v~ 111 (230)
T PRK09391 34 AGLVASEFSYKKGEEIYGEGE-P-ADYVYQVESGAVRTYRLLSDGRRQIGAFHLPGDVFGLESGSTHRFTAEAIVDTTVR 111 (230)
T ss_pred ccceeeeEEECCCCEEECCCC-C-CCeEEEEEeCEEEEEEECCCCcEEEEEEecCCceecccCCCcCCeEEEEcCceEEE
Confidence 356677888999977643322 2 56799999999999999999987666778999988665554433222 23455655
Q ss_pred EE
Q 018395 300 SI 301 (356)
Q Consensus 300 ~~ 301 (356)
.+
T Consensus 112 ~i 113 (230)
T PRK09391 112 LI 113 (230)
T ss_pred EE
Confidence 55
No 164
>PRK13918 CRP/FNR family transcriptional regulator; Provisional
Probab=83.61 E-value=4.9 Score=35.30 Aligned_cols=56 Identities=18% Similarity=0.077 Sum_probs=41.2
Q ss_pred eEEEEecCCCeecccccc-cCCeeEEEEEeceEEEEEEccCCceEEEEEecCCcEEEE
Q 018395 225 ADLVRLDGKAMCSPGFSC-DSALQVTYIVRGSGRAQIVGPDGKRVLETTVKAGNLFIV 281 (356)
Q Consensus 225 ~~~v~l~~g~~~~PH~h~-~~A~ei~~v~~G~~~~~iv~~~g~~~~~~~l~~Gdv~vv 281 (356)
+..+++.+|.+.---=-+ . ++.+.+|++|.+++...+++|+..+-.-+.+||+|=-
T Consensus 6 ~~~~~~~kg~~l~~~Gd~~~-~~~~y~I~~G~vr~~~~~~~G~e~~l~~~~~Gd~~G~ 62 (202)
T PRK13918 6 VDTVTYRPGAVILYPGVPGP-SDMLYRVRSGLVRLHTVDDEGNALTLRYVRPGEYFGE 62 (202)
T ss_pred cceeEecCCCEEEcCCCCCC-CCeEEEEEeeEEEEEEECCCCCEEEEEEecCCCeech
Confidence 345567777665211111 2 4679999999999999999998877778899998744
No 165
>PF00027 cNMP_binding: Cyclic nucleotide-binding domain; InterPro: IPR000595 Proteins that bind cyclic nucleotides (cAMP or cGMP) share a structural domain of about 120 residues [, , ]. The best studied of these proteins is the prokaryotic catabolite gene activator (also known as the cAMP receptor protein) (gene crp) where such a domain is known to be composed of three alpha-helices and a distinctive eight-stranded, antiparallel beta-barrel structure. There are six invariant amino acids in this domain, three of which are glycine residues that are thought to be essential for maintenance of the structural integrity of the beta-barrel. cAMP- and cGMP-dependent protein kinases (cAPK and cGPK) contain two tandem copies of the cyclic nucleotide-binding domain. The cAPK's are composed of two different subunits, a catalytic chain and a regulatory chain, which contains both copies of the domain. The cGPK's are single chain enzymes that include the two copies of the domain in their N-terminal section. Vertebrate cyclic nucleotide-gated ion-channels also contain this domain. Two such cations channels have been fully characterised, one is found in rod cells where it plays a role in visual signal transduction.; PDB: 1O7F_A 2BYV_E 3E97_A 3U10_A 2H6B_A 3SHR_A 2OZ6_A 1WGP_A 3LA2_A 3LA3_B ....
Probab=83.43 E-value=6.1 Score=29.18 Aligned_cols=49 Identities=14% Similarity=0.203 Sum_probs=35.7
Q ss_pred EecCCCeecccccccCCeeEEEEEeceEEEEEEccCCceEEEEEecCCcEE
Q 018395 229 RLDGKAMCSPGFSCDSALQVTYIVRGSGRAQIVGPDGKRVLETTVKAGNLF 279 (356)
Q Consensus 229 ~l~~g~~~~PH~h~~~A~ei~~v~~G~~~~~iv~~~g~~~~~~~l~~Gdv~ 279 (356)
++.+|...-..-. . ...+.||++|.+++...+.+++......+.+||++
T Consensus 3 ~~~~g~~i~~~g~-~-~~~~~~i~~G~v~~~~~~~~~~~~~~~~~~~g~~~ 51 (91)
T PF00027_consen 3 TYKKGEVIYRQGD-P-CDHIYIILSGEVKVSSINEDGKEQIIFFLGPGDIF 51 (91)
T ss_dssp EESTTEEEEETTS-B-ESEEEEEEESEEEEEEETTTSEEEEEEEEETTEEE
T ss_pred EECCCCEEEeCCC-c-CCEEEEEEECceEEEeceecceeeeecceeeeccc
Confidence 3455554422221 2 45899999999999999999876666788899887
No 166
>COG3806 ChrR Transcriptional activator [Transcription]
Probab=82.94 E-value=6 Score=35.31 Aligned_cols=90 Identities=18% Similarity=-0.045 Sum_probs=63.7
Q ss_pred ceeeCCCeEEEEeCCCCCCCcccCceEEEEEEecCCCcccCeeeCCCEEEEEEeCeEEEEEEcCCCceEEEEEcCCCEEE
Q 018395 12 QVYGGNGGSYHAWCPNELPMLRQGNIGAAKLALEKNGFALPHYCDSARVAYVLQGSGVAGIVLPEKEEKVVAIKKGDGIA 91 (356)
Q Consensus 12 ~~~~~~~G~i~~~~~~~~p~l~~~~~~~~~~~l~Pg~~~~pH~h~a~e~~yVl~G~~~~~vv~~~~~~~~~~l~~GDv~~ 91 (356)
-++...||+++.+... .+-+.+++++.+.||..++-|.|-+-|...|++|... +++ .++..||...
T Consensus 108 ~~W~~~G~rv~~v~l~-----~dds~~V~llki~~g~s~P~HtH~G~E~t~vl~G~~s----de~-----G~y~vgD~~~ 173 (216)
T COG3806 108 WRWLGPGGRVEPVRLP-----TDDSRRVALLKIEPGRSFPDHTHVGIERTAVLEGAFS----DEN-----GEYLVGDFTL 173 (216)
T ss_pred eeeecCCcceeecccC-----CCCCceeEEEEeccCcccccccccceEEEEEEeeccc----cCC-----CccccCceee
Confidence 3444555655544331 2346788999999999999999999999999998643 233 3677888888
Q ss_pred eCCCcEEEEEecCCCcEEEEEEee
Q 018395 92 LPFGVVTWWYNKEDTELVVLFLGD 115 (356)
Q Consensus 92 iP~G~~H~~~N~g~e~l~~l~i~~ 115 (356)
-+.+.-|.-.-..+.++..++..+
T Consensus 174 ~d~~v~H~piv~~~~eClcl~al~ 197 (216)
T COG3806 174 ADGTVQHSPIVLPPGECLCLAALD 197 (216)
T ss_pred cCCccccccccCCCCCceEEEEcC
Confidence 888888875544555566666544
No 167
>PF00027 cNMP_binding: Cyclic nucleotide-binding domain; InterPro: IPR000595 Proteins that bind cyclic nucleotides (cAMP or cGMP) share a structural domain of about 120 residues [, , ]. The best studied of these proteins is the prokaryotic catabolite gene activator (also known as the cAMP receptor protein) (gene crp) where such a domain is known to be composed of three alpha-helices and a distinctive eight-stranded, antiparallel beta-barrel structure. There are six invariant amino acids in this domain, three of which are glycine residues that are thought to be essential for maintenance of the structural integrity of the beta-barrel. cAMP- and cGMP-dependent protein kinases (cAPK and cGPK) contain two tandem copies of the cyclic nucleotide-binding domain. The cAPK's are composed of two different subunits, a catalytic chain and a regulatory chain, which contains both copies of the domain. The cGPK's are single chain enzymes that include the two copies of the domain in their N-terminal section. Vertebrate cyclic nucleotide-gated ion-channels also contain this domain. Two such cations channels have been fully characterised, one is found in rod cells where it plays a role in visual signal transduction.; PDB: 1O7F_A 2BYV_E 3E97_A 3U10_A 2H6B_A 3SHR_A 2OZ6_A 1WGP_A 3LA2_A 3LA3_B ....
Probab=82.79 E-value=3.3 Score=30.70 Aligned_cols=49 Identities=12% Similarity=0.155 Sum_probs=34.1
Q ss_pred EecCCCcccCeeeCCCEEEEEEeCeEEEEEEcCCCceE-EEEEcCCCEEE
Q 018395 43 ALEKNGFALPHYCDSARVAYVLQGSGVAGIVLPEKEEK-VVAIKKGDGIA 91 (356)
Q Consensus 43 ~l~Pg~~~~pH~h~a~e~~yVl~G~~~~~vv~~~~~~~-~~~l~~GDv~~ 91 (356)
++++|..+...-...+.++||++|...+...+.+++.. ...+.+||++-
T Consensus 3 ~~~~g~~i~~~g~~~~~~~~i~~G~v~~~~~~~~~~~~~~~~~~~g~~~g 52 (91)
T PF00027_consen 3 TYKKGEVIYRQGDPCDHIYIILSGEVKVSSINEDGKEQIIFFLGPGDIFG 52 (91)
T ss_dssp EESTTEEEEETTSBESEEEEEEESEEEEEEETTTSEEEEEEEEETTEEES
T ss_pred EECCCCEEEeCCCcCCEEEEEEECceEEEeceecceeeeecceeeecccc
Confidence 44555544322226789999999999999888776543 56778888763
No 168
>TIGR02466 conserved hypothetical protein. This family consists of uncharacterized proteins in Caulobacter crescentus CB15, Bdellovibrio bacteriovorus HD100, Synechococcus sp. WH 8102 (2), Silicibacter pomeroyi DSS-3 (2), and Hyphomonas neptunium ATCC 15444. The context of nearby genes differs substantially between members and does point to any specific biological role.
Probab=82.21 E-value=7.3 Score=35.04 Aligned_cols=69 Identities=19% Similarity=0.126 Sum_probs=46.7
Q ss_pred EEEEEEecCCCcccCeee-CC--CEEEEEE--eCeEEEEEEcCCCc------------------eEEEEEcCCCEEEeCC
Q 018395 38 GAAKLALEKNGFALPHYC-DS--ARVAYVL--QGSGVAGIVLPEKE------------------EKVVAIKKGDGIALPF 94 (356)
Q Consensus 38 ~~~~~~l~Pg~~~~pH~h-~a--~e~~yVl--~G~~~~~vv~~~~~------------------~~~~~l~~GDv~~iP~ 94 (356)
.+-...+++|+....|.| ++ .-++||. .+.+.+.+.+|... .....-++||+++||.
T Consensus 97 ~~W~ni~~~Gg~h~~H~Hp~~~lSgvyYl~~p~~~g~~~f~~p~~~~~~~~~~~~~~~~~~~~~~~~v~P~~G~lvlFPS 176 (201)
T TIGR02466 97 KAWVNILPQGGTHSPHLHPGSVISGTYYVQTPENCGAIKFEDPRLDDMMAAPMRIPNAKRAVQRFVYVPPQEGRVLLFES 176 (201)
T ss_pred eEeEEEcCCCCccCceECCCceEEEEEEEeCCCCCCceeEecCcchhhhccccccCccccccCccEEECCCCCeEEEECC
Confidence 345667889999999999 54 4567766 34455555544210 1123558999999999
Q ss_pred CcEEEEE-ecCCC
Q 018395 95 GVVTWWY-NKEDT 106 (356)
Q Consensus 95 G~~H~~~-N~g~e 106 (356)
-..|... |.+++
T Consensus 177 ~L~H~v~p~~~~~ 189 (201)
T TIGR02466 177 WLRHEVPPNESEE 189 (201)
T ss_pred CCceecCCCCCCC
Confidence 9999986 44444
No 169
>PRK10572 DNA-binding transcriptional regulator AraC; Provisional
Probab=81.99 E-value=3.7 Score=38.51 Aligned_cols=41 Identities=22% Similarity=0.349 Sum_probs=32.9
Q ss_pred CeeEEEEEeceEEEEEEccCCceEEEEEecCCcEEEEcCCcEEEEee
Q 018395 245 ALQVTYIVRGSGRAQIVGPDGKRVLETTVKAGNLFIVPRFYVVSKIA 291 (356)
Q Consensus 245 A~ei~~v~~G~~~~~iv~~~g~~~~~~~l~~Gdv~vvP~g~~h~~~~ 291 (356)
+..+.|+++|++.+. ++ + + ...+++||++++|+|.+|....
T Consensus 49 ~~~i~~~~~G~~~~~-~~--~-~--~~~~~~g~~i~i~p~~~h~~~~ 89 (290)
T PRK10572 49 GYILNLTIRGQGVIF-NG--G-R--AFVCRPGDLLLFPPGEIHHYGR 89 (290)
T ss_pred ceEEEEEEeccEEEe-cC--C-e--eEecCCCCEEEECCCCceeecc
Confidence 778999999999875 22 2 2 2579999999999999998643
No 170
>PF14525 AraC_binding_2: AraC-binding-like domain
Probab=81.96 E-value=12 Score=31.51 Aligned_cols=42 Identities=19% Similarity=0.105 Sum_probs=31.1
Q ss_pred EEEEEEeCeEEEEEEcCCCceEEEEEcCCCEEEeCCCcEEEEEecCC
Q 018395 59 RVAYVLQGSGVAGIVLPEKEEKVVAIKKGDGIALPFGVVTWWYNKED 105 (356)
Q Consensus 59 e~~yVl~G~~~~~vv~~~~~~~~~~l~~GDv~~iP~G~~H~~~N~g~ 105 (356)
-+.+.++|.+.+.. ++ ....+.+||+++++++.++.+.-.++
T Consensus 57 ~l~~~~~G~~~~~~---~g--~~~~~~pg~~~l~d~~~~~~~~~~~~ 98 (172)
T PF14525_consen 57 LLVLPLSGSARIEQ---GG--REVELAPGDVVLLDPGQPYRLEFSAG 98 (172)
T ss_pred EEEEEccCCEEEEE---CC--EEEEEcCCeEEEEcCCCCEEEEECCC
Confidence 45556677777664 33 34899999999999999988776543
No 171
>PRK12335 tellurite resistance protein TehB; Provisional
Probab=80.92 E-value=5.5 Score=37.60 Aligned_cols=58 Identities=12% Similarity=-0.093 Sum_probs=45.3
Q ss_pred CCCcccCeee--CCCEEEEEEeCeEEEEEEcCCCceE-EEEEcC-CCEEEeCCCcEEEEEec
Q 018395 46 KNGFALPHYC--DSARVAYVLQGSGVAGIVLPEKEEK-VVAIKK-GDGIALPFGVVTWWYNK 103 (356)
Q Consensus 46 Pg~~~~pH~h--~a~e~~yVl~G~~~~~vv~~~~~~~-~~~l~~-GDv~~iP~G~~H~~~N~ 103 (356)
|+++..||-| ...+.+.|++|+..+.+.++++.+. ...+.+ ++.-++|++..|.+.-.
T Consensus 20 p~~~~~~H~t~~g~~~~~~vl~G~l~~~~~de~g~~~~~~~l~~~~~~~~i~p~~wh~v~~~ 81 (287)
T PRK12335 20 PEMFQEKHNTKEGTWAKLTVLKGELKFYELTEDGEELSEHIFDAENQPPFIEPQAWHRIEAA 81 (287)
T ss_pred hHHHHhccCCCCCcceEEEEEeeeEEEEEECCCCCeeeEEEEecCCCCceeCCcceEEEEEc
Confidence 7788999988 6678999999999998887776432 244544 45667999999999875
No 172
>PRK13918 CRP/FNR family transcriptional regulator; Provisional
Probab=80.81 E-value=5.3 Score=35.08 Aligned_cols=54 Identities=13% Similarity=-0.015 Sum_probs=38.4
Q ss_pred EEEEecCCCcccCeee--CCCEEEEEEeCeEEEEEEcCCCceEE-EEEcCCCEEEeC
Q 018395 40 AKLALEKNGFALPHYC--DSARVAYVLQGSGVAGIVLPEKEEKV-VAIKKGDGIALP 93 (356)
Q Consensus 40 ~~~~l~Pg~~~~pH~h--~a~e~~yVl~G~~~~~vv~~~~~~~~-~~l~~GDv~~iP 93 (356)
...++++|.....--- .++.+++|++|..++...+++|++.. .-+.+||++-.+
T Consensus 7 ~~~~~~kg~~l~~~Gd~~~~~~~y~I~~G~vr~~~~~~~G~e~~l~~~~~Gd~~G~~ 63 (202)
T PRK13918 7 DTVTYRPGAVILYPGVPGPSDMLYRVRSGLVRLHTVDDEGNALTLRYVRPGEYFGEE 63 (202)
T ss_pred ceeEecCCCEEEcCCCCCCCCeEEEEEeeEEEEEEECCCCCEEEEEEecCCCeechH
Confidence 3456667664433222 35789999999999999888887665 455999988553
No 173
>PF06865 DUF1255: Protein of unknown function (DUF1255); InterPro: IPR009664 This family consists of several conserved hypothetical bacterial proteins of around 95 residues in length. The function of this family is unknown; PDB: 2OYZ_A 3HQX_A.
Probab=80.78 E-value=25 Score=27.60 Aligned_cols=69 Identities=20% Similarity=0.172 Sum_probs=46.3
Q ss_pred eEEEEecCCCeecccccccCCeeEEEEEeceEEEEEEccCCceEEEEEecCCcEEEEcCCcEEEEeeCCCCeEEEEEE
Q 018395 225 ADLVRLDGKAMCSPGFSCDSALQVTYIVRGSGRAQIVGPDGKRVLETTVKAGNLFIVPRFYVVSKIADPDGLAWFSII 302 (356)
Q Consensus 225 ~~~v~l~~g~~~~PH~h~~~A~ei~~v~~G~~~~~iv~~~g~~~~~~~l~~Gdv~vvP~g~~h~~~~~~~~~~~~~~~ 302 (356)
....-+.||- -++.+. +.|+.-|++|...+.+-.... + .+..+|+-|.||++.-.-+.. .+...++|.+
T Consensus 25 ~TlGVm~pGe---Y~F~T~-~~E~M~vvsG~l~V~lpg~~e---w-~~~~aGesF~VpanssF~v~v-~~~~~Y~C~y 93 (94)
T PF06865_consen 25 KTLGVMLPGE---YTFGTS-APERMEVVSGELEVKLPGEDE---W-QTYSAGESFEVPANSSFDVKV-KEPTAYLCSY 93 (94)
T ss_dssp EEEEEE-SEC---EEEEES-S-EEEEEEESEEEEEETT-SS-----EEEETT-EEEE-TTEEEEEEE-SS-EEEEEEE
T ss_pred ceEEEEeeeE---EEEcCC-CCEEEEEEEeEEEEEcCCCcc---c-EEeCCCCeEEECCCCeEEEEE-CcceeeEEEe
Confidence 3444566775 377887 999999999999999877653 1 368899999999987766544 4667777643
No 174
>PRK11753 DNA-binding transcriptional dual regulator Crp; Provisional
Probab=80.66 E-value=12 Score=32.97 Aligned_cols=53 Identities=17% Similarity=0.111 Sum_probs=39.7
Q ss_pred EEEEecCCCcccCeeeCCCEEEEEEeCeEEEEEEcCCCceE-EEEEcCCCEEEe
Q 018395 40 AKLALEKNGFALPHYCDSARVAYVLQGSGVAGIVLPEKEEK-VVAIKKGDGIAL 92 (356)
Q Consensus 40 ~~~~l~Pg~~~~pH~h~a~e~~yVl~G~~~~~vv~~~~~~~-~~~l~~GDv~~i 92 (356)
...++++|..+...=...+.+++|++|...+...+.+|++. ...+.+||.+-.
T Consensus 21 ~~~~~~kg~~l~~~g~~~~~~y~V~~G~v~~~~~~~~g~~~~~~~~~~g~~~g~ 74 (211)
T PRK11753 21 HIHKYPAKSTLIHAGEKAETLYYIVKGSVAVLIKDEEGKEMILSYLNQGDFIGE 74 (211)
T ss_pred eEEEeCCCCEEEeCCCCCCeEEEEEeCEEEEEEECCCCCEEEEEEcCCCCEEee
Confidence 46788888866533336788999999999998777666544 457899999744
No 175
>PRK11753 DNA-binding transcriptional dual regulator Crp; Provisional
Probab=80.54 E-value=17 Score=31.92 Aligned_cols=76 Identities=17% Similarity=0.129 Sum_probs=51.0
Q ss_pred eEEEEecCCCeecccccccCCeeEEEEEeceEEEEEEccCCceEEEEEecCCcEEEE----cCCcEEEEee-CCCCeEEE
Q 018395 225 ADLVRLDGKAMCSPGFSCDSALQVTYIVRGSGRAQIVGPDGKRVLETTVKAGNLFIV----PRFYVVSKIA-DPDGLAWF 299 (356)
Q Consensus 225 ~~~v~l~~g~~~~PH~h~~~A~ei~~v~~G~~~~~iv~~~g~~~~~~~l~~Gdv~vv----P~g~~h~~~~-~~~~~~~~ 299 (356)
+....+++|.+....=. . +..+.+|++|.+++...+++|+...-..+.+||++-. .....+...+ ..++++++
T Consensus 20 ~~~~~~~kg~~l~~~g~-~-~~~~y~V~~G~v~~~~~~~~g~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~a~~~~~v~ 97 (211)
T PRK11753 20 CHIHKYPAKSTLIHAGE-K-AETLYYIVKGSVAVLIKDEEGKEMILSYLNQGDFIGELGLFEEGQERSAWVRAKTACEVA 97 (211)
T ss_pred CeEEEeCCCCEEEeCCC-C-CCeEEEEEeCEEEEEEECCCCCEEEEEEcCCCCEEeehhhccCCCCceEEEEEcCcEEEE
Confidence 45678888887643322 3 6689999999999999998888777778999999833 2222222222 24556666
Q ss_pred EEE
Q 018395 300 SII 302 (356)
Q Consensus 300 ~~~ 302 (356)
.+-
T Consensus 98 ~i~ 100 (211)
T PRK11753 98 EIS 100 (211)
T ss_pred EEc
Confidence 653
No 176
>PF11142 DUF2917: Protein of unknown function (DUF2917); InterPro: IPR021317 This bacterial family of proteins appears to be restricted to Proteobacteria.
Probab=79.67 E-value=12 Score=27.03 Aligned_cols=57 Identities=19% Similarity=0.014 Sum_probs=42.0
Q ss_pred EEecCCCeecccccccCCeeEEEEEeceEEEEEEccCCceEEEEEecCCcEEEEcCCcEEEEee
Q 018395 228 VRLDGKAMCSPGFSCDSALQVTYIVRGSGRAQIVGPDGKRVLETTVKAGNLFIVPRFYVVSKIA 291 (356)
Q Consensus 228 v~l~~g~~~~PH~h~~~A~ei~~v~~G~~~~~iv~~~g~~~~~~~l~~Gdv~vvP~g~~h~~~~ 291 (356)
..|.||.... |.+. +...+-|.+|++.++.-... -+.-|++||.+.+|+|--.++.+
T Consensus 2 ~~L~~g~~~~--lr~~-~~~~l~v~~G~vWlT~~g~~----~D~~L~~G~~l~l~~g~~vvl~a 58 (63)
T PF11142_consen 2 FELAPGETLS--LRAA-AGQRLRVESGRVWLTREGDP----DDYWLQAGDSLRLRRGGRVVLSA 58 (63)
T ss_pred EEeCCCceEE--eEcC-CCcEEEEccccEEEECCCCC----CCEEECCCCEEEeCCCCEEEEEe
Confidence 3567776664 4455 55669999999999874422 25679999999999998777655
No 177
>COG3822 ABC-type sugar transport system, auxiliary component [General function prediction only]
Probab=77.68 E-value=11 Score=33.39 Aligned_cols=71 Identities=13% Similarity=0.138 Sum_probs=46.1
Q ss_pred CceEEEEEEecCCCcccCeeeC--CCEEEEEEeCeEEEEEEcCC-----------------Cce-----EEEEEcCCCEE
Q 018395 35 GNIGAAKLALEKNGFALPHYCD--SARVAYVLQGSGVAGIVLPE-----------------KEE-----KVVAIKKGDGI 90 (356)
Q Consensus 35 ~~~~~~~~~l~Pg~~~~pH~h~--a~e~~yVl~G~~~~~vv~~~-----------------~~~-----~~~~l~~GDv~ 90 (356)
.-++=..+.+.||...+.|+|. ++.+.===.|+.++.+.... +++ -..+|+||+.+
T Consensus 84 ~~yaeKiM~vr~gQvtPmHrH~~k~eDiinrgggtlv~el~~~d~~~~~~~ks~vtv~~dg~r~~~~ag~~lkL~PGesi 163 (225)
T COG3822 84 KCYAEKIMHVRPGQVTPMHRHWRKPEDIINRGGGTLVVELWNVDLVEGQDEKSDVTVPVDGCRQTHTAGSQLKLSPGESI 163 (225)
T ss_pred ccchheeEEeccCCcCcccccccchhhhhhcCCceEEEEEeccccccCcCCCCCeEecCCCcEEEeccceeEEECCCCcE
Confidence 3445567899999999999993 44433222233333332211 111 12589999999
Q ss_pred EeCCCcEEEEEecCC
Q 018395 91 ALPFGVVTWWYNKED 105 (356)
Q Consensus 91 ~iP~G~~H~~~N~g~ 105 (356)
-+|+|..||.+.-+.
T Consensus 164 tL~Pg~~HsFwae~g 178 (225)
T COG3822 164 TLPPGLYHSFWAEEG 178 (225)
T ss_pred ecCCCceeeeeecCC
Confidence 999999999998543
No 178
>COG3542 Uncharacterized conserved protein [Function unknown]
Probab=77.63 E-value=44 Score=28.53 Aligned_cols=58 Identities=14% Similarity=0.175 Sum_probs=41.0
Q ss_pred EEEEecCCCeecccccccCCeeEEEEEec-eEEEEEEccCCce-EEE--EEecCCcE--EEEcCCcE
Q 018395 226 DLVRLDGKAMCSPGFSCDSALQVTYIVRG-SGRAQIVGPDGKR-VLE--TTVKAGNL--FIVPRFYV 286 (356)
Q Consensus 226 ~~v~l~~g~~~~PH~h~~~A~ei~~v~~G-~~~~~iv~~~g~~-~~~--~~l~~Gdv--~vvP~g~~ 286 (356)
-..-|+++.+. |||...|.|+-+...| .+.+.++. +|+. .+. -.++.|++ .+||+|-+
T Consensus 47 IYyLLe~~~~s--~~HRv~a~eiwHf~ag~pl~~~l~~-dG~~~s~~LG~d~~~Ge~~Q~vVP~g~w 110 (162)
T COG3542 47 IYYLLEEDNIS--AWHRVTADEIWHFYAGAPLELHLSE-DGGAESFTLGPDLEKGERPQYVVPAGTW 110 (162)
T ss_pred EEEEecCCccc--hheecchhheEEEecCCceEEEEEe-CCCeEEEEecccccCCceeEEEEeCCcE
Confidence 33457788754 8887768899888887 68888888 6543 222 27788887 49999943
No 179
>COG5553 Predicted metal-dependent enzyme of the double-stranded beta helix superfamily [General function prediction only]
Probab=76.82 E-value=10 Score=32.80 Aligned_cols=38 Identities=13% Similarity=0.019 Sum_probs=31.2
Q ss_pred ceeEEEEecCCCeecccccccCCeeEEEEEeceEEEEEEc
Q 018395 223 CGADLVRLDGKAMCSPGFSCDSALQVTYIVRGSGRAQIVG 262 (356)
Q Consensus 223 ~s~~~v~l~~g~~~~PH~h~~~A~ei~~v~~G~~~~~iv~ 262 (356)
+++..+.+.||-+.+||-|- -+-++=|++|-=+-++..
T Consensus 73 ltV~~~t~~PG~~~p~HnH~--~wglVgil~G~E~n~~y~ 110 (191)
T COG5553 73 LTVYHITLSPGVQYPPHNHL--MWGLVGILWGGETNFIYP 110 (191)
T ss_pred EEEEEEEeCCCcccCCcccc--hheeeeeeecccccceec
Confidence 67899999999999999995 577888899866555554
No 180
>PRK10579 hypothetical protein; Provisional
Probab=74.52 E-value=24 Score=27.67 Aligned_cols=66 Identities=14% Similarity=0.164 Sum_probs=49.3
Q ss_pred EEEecCCCeecccccccCCeeEEEEEeceEEEEEEccCCceEEEEEecCCcEEEEcCCcEEEEeeCCCCeEEEEE
Q 018395 227 LVRLDGKAMCSPGFSCDSALQVTYIVRGSGRAQIVGPDGKRVLETTVKAGNLFIVPRFYVVSKIADPDGLAWFSI 301 (356)
Q Consensus 227 ~v~l~~g~~~~PH~h~~~A~ei~~v~~G~~~~~iv~~~g~~~~~~~l~~Gdv~vvP~g~~h~~~~~~~~~~~~~~ 301 (356)
...+.||- -++.+. +.|+.=|++|+.++.+-....= ...++|+-|.||++.-.-+.. .+...++|.
T Consensus 27 lGVm~pGe---y~F~T~-~~E~MeivsG~l~V~Lpg~~ew----~~~~aG~sF~VpanssF~l~v-~~~t~Y~C~ 92 (94)
T PRK10579 27 VGVMAEGE---YTFSTA-EPEEMTVISGALNVLLPGATDW----QVYEAGEVFNVPGHSEFHLQV-AEPTSYLCR 92 (94)
T ss_pred EEEEeeeE---EEEcCC-CcEEEEEEeeEEEEECCCCccc----EEeCCCCEEEECCCCeEEEEE-CcceeeEEE
Confidence 33456665 477887 9999999999999998876531 368899999999987766544 356666664
No 181
>COG5553 Predicted metal-dependent enzyme of the double-stranded beta helix superfamily [General function prediction only]
Probab=72.91 E-value=14 Score=32.01 Aligned_cols=70 Identities=16% Similarity=0.012 Sum_probs=50.9
Q ss_pred eEEEEEEecCCCcccCeeeCCCEEEEEEeCeEEEEEEcCCCc------eEEEEEcCCCEEEeCCCcEEEEEecCCCc
Q 018395 37 IGAAKLALEKNGFALPHYCDSARVAYVLQGSGVAGIVLPEKE------EKVVAIKKGDGIALPFGVVTWWYNKEDTE 107 (356)
Q Consensus 37 ~~~~~~~l~Pg~~~~pH~h~a~e~~yVl~G~~~~~vv~~~~~------~~~~~l~~GDv~~iP~G~~H~~~N~g~e~ 107 (356)
+++..+++.||...++|-|...-++=|+.|.-+-.+..-.+. .......+|.|- +-+|.+|.+.|++..+
T Consensus 73 ltV~~~t~~PG~~~p~HnH~~wglVgil~G~E~n~~y~~~~~~~~~P~~qdk~~apgeV~-lSpgdihsv~n~~sdr 148 (191)
T COG5553 73 LTVYHITLSPGVQYPPHNHLMWGLVGILWGGETNFIYPLAGEEVDEPERQDKFAAPGEVH-LSPGDIHSVANTGSDR 148 (191)
T ss_pred EEEEEEEeCCCcccCCcccchheeeeeeecccccceecccCCCCCCcchhhhhcCcceEe-eCCCCeeeecccCCCc
Confidence 788999999999999999988888889998765554432211 012466777777 4448888888876553
No 182
>cd00038 CAP_ED effector domain of the CAP family of transcription factors; members include CAP (or cAMP receptor protein (CRP)), which binds cAMP, FNR (fumarate and nitrate reduction), which uses an iron-sulfur cluster to sense oxygen) and CooA, a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. Cyclic nucleotide-binding domain similar to CAP are also present in cAMP- and cGMP-dependent protein kinases (cAPK and cGPK) and vertebrate cyclic nucleotide-gated ion-channels. Cyclic nucleotide-monophosphate binding domain; proteins that bind cyclic nucleotides (cAMP or cGMP) share a structural domain of about 120 residues; the best studied is the prokaryotic catabolite gene activator, CAP, where such a domain is known to be composed of three alpha-helices and a distinctive eight-stranded, antiparallel beta-barrel structure; three conserved glycine residues are thought to be essential for maintenance of
Probab=72.90 E-value=16 Score=27.75 Aligned_cols=56 Identities=16% Similarity=0.112 Sum_probs=40.6
Q ss_pred eEEEEecCCCeecccccccCCeeEEEEEeceEEEEEEccCCceEEEEEecCCcEEEEc
Q 018395 225 ADLVRLDGKAMCSPGFSCDSALQVTYIVRGSGRAQIVGPDGKRVLETTVKAGNLFIVP 282 (356)
Q Consensus 225 ~~~v~l~~g~~~~PH~h~~~A~ei~~v~~G~~~~~iv~~~g~~~~~~~l~~Gdv~vvP 282 (356)
+....+.+|.+.--.= .. ...+.++++|.+.+...+++|+...-..+.+|+++=.+
T Consensus 17 ~~~~~~~~g~~l~~~~-~~-~~~~~~i~~G~v~~~~~~~~g~~~~~~~~~~g~~~g~~ 72 (115)
T cd00038 17 LEERRFPAGEVIIRQG-DP-ADSLYIVLSGSVEVYKLDEDGREQIVGFLGPGDLFGEL 72 (115)
T ss_pred ceeeeeCCCCEEEcCC-CC-CCeEEEEEeCEEEEEEECCCCcEEEEEecCCccCcChH
Confidence 3455677777662111 22 45799999999999999998877777788999987443
No 183
>KOG2130 consensus Phosphatidylserine-specific receptor PtdSerR, contains JmjC domain [Chromatin structure and dynamics; Signal transduction mechanisms]
Probab=72.35 E-value=8 Score=37.03 Aligned_cols=85 Identities=12% Similarity=0.019 Sum_probs=52.3
Q ss_pred CcEEEEeCCCCCCCccccCceeEEEEecCCCeecccccccCCeeEEEEEeceEEEEEEccCC--------------ceEE
Q 018395 204 GGRVVLLNTKNLPLVGEVGCGADLVRLDGKAMCSPGFSCDSALQVTYIVRGSGRAQIVGPDG--------------KRVL 269 (356)
Q Consensus 204 gG~~~~~~~~~~p~l~~l~~s~~~v~l~~g~~~~PH~h~~~A~ei~~v~~G~~~~~iv~~~g--------------~~~~ 269 (356)
-|....+++..-.+-|+|=-+-.+=.|-|-+...+-.|+. ++| .|+..+++++... .+-+
T Consensus 190 SGtsiHIDPlgTSAWNtll~GhKrW~LfPp~~p~~lvkv~-~~e-----~g~~~de~itwf~~~y~rt~~Pswp~E~kPI 263 (407)
T KOG2130|consen 190 SGTSIHIDPLGTSAWNTLLQGHKRWVLFPPGTPPELVKVT-VDE-----GGKQPDEIITWFSTIYPRTQLPSWPDEYKPI 263 (407)
T ss_pred CCceeEECCcchHHHHHHhhccceeEEcCCCCCCCceeec-ccc-----cCCCCcceechhhhccccccCCCCccccCCc
Confidence 4566666766666655553334444454444444444443 333 3567777777653 1335
Q ss_pred EEEecCCcEEEEcCCcEEEEeeCCC
Q 018395 270 ETTVKAGNLFIVPRFYVVSKIADPD 294 (356)
Q Consensus 270 ~~~l~~Gdv~vvP~g~~h~~~~~~~ 294 (356)
.....+|.+++||-||+|.+.|-++
T Consensus 264 Ec~q~pGEt~fVP~GWWHvVlNle~ 288 (407)
T KOG2130|consen 264 ECLQKPGETMFVPSGWWHVVLNLEP 288 (407)
T ss_pred eeeecCCceEEecCCeEEEEeccCc
Confidence 5678999999999999999876443
No 184
>COG1482 ManA Phosphomannose isomerase [Carbohydrate transport and metabolism]
Probab=71.92 E-value=23 Score=34.03 Aligned_cols=58 Identities=19% Similarity=0.247 Sum_probs=41.2
Q ss_pred CceEEEEEEecC-CCcccCeeeCCCEEEEEEeCeEEEEEEcCCCceEEEEEcCCCEEEeCCCcEEEE
Q 018395 35 GNIGAAKLALEK-NGFALPHYCDSARVAYVLQGSGVAGIVLPEKEEKVVAIKKGDGIALPFGVVTWW 100 (356)
Q Consensus 35 ~~~~~~~~~l~P-g~~~~pH~h~a~e~~yVl~G~~~~~vv~~~~~~~~~~l~~GDv~~iP~G~~H~~ 100 (356)
..+++.+..+.. ..+.. +....+++|++|++++.. + ..+..|++|+.+.+|+...-|.
T Consensus 240 ~~F~l~~~~i~~~~~~~~---~~~~~il~v~eG~~~l~~---~--~~~~~l~~G~s~~ipa~~~~~~ 298 (312)
T COG1482 240 EDFALYKWDISGTAEFIK---QESFSILLVLEGEGTLIG---G--GQTLKLKKGESFFIPANDGPYT 298 (312)
T ss_pred cceEEEEEeccChhhhcc---CCCcEEEEEEcCeEEEec---C--CEEEEEcCCcEEEEEcCCCcEE
Confidence 456667777664 11111 247899999999999964 2 2458999999999999954443
No 185
>PF04962 KduI: KduI/IolB family; InterPro: IPR021120 The KduI/IolB family of enzymes includes 5-keto 4-deoxyuronate isomerase (KduI) and 5-deoxy-glucuronate isomerase (IolB). KduI is involved in pectin degradation by free-living soil bacteria that use pectin as a carbon source, breaking it down to 2-keto-3-deoxygluconate, which can ultimately be converted to pyruvate. KduI catalyses the fourth step in pectin degradation, namely the interconversion of 5-keto-4-deoxyuronate and 2,5-diketo-3-dexoygluconate []. KduI has a TIM-barrel fold []. IolB is one of several bacterial proteins encoded by the inositol operon (iolABCDEFGHIJ) in Bacillus subtilis that are involved in myo-inositol catabolism. The enzyme is responsible for isomerization of 5-deoxy-D-glucuronic acid by IolB to produce 2-deoxy-5-keto-D-gluconic acid []. IolBs possess a cupin-like structure.; GO: 0016861 intramolecular oxidoreductase activity, interconverting aldoses and ketoses, 0008152 metabolic process; PDB: 1YWK_B 2QJV_B 1X8M_A 1XRU_A.
Probab=71.77 E-value=40 Score=31.59 Aligned_cols=79 Identities=15% Similarity=0.260 Sum_probs=43.6
Q ss_pred cCceEEEEEEecCCCc---ccCeeeCC---------CEEEEEE-e---CeEEEEEEcCC-CceEEEEEcCCCEEEeCCCc
Q 018395 34 QGNIGAAKLALEKNGF---ALPHYCDS---------ARVAYVL-Q---GSGVAGIVLPE-KEEKVVAIKKGDGIALPFGV 96 (356)
Q Consensus 34 ~~~~~~~~~~l~Pg~~---~~pH~h~a---------~e~~yVl-~---G~~~~~vv~~~-~~~~~~~l~~GDv~~iP~G~ 96 (356)
..++-+..+. .|++. .+||.|+. +|++|-- + |-+.-.+..++ .....+.++-||++.+|.|.
T Consensus 148 ~~~Lv~get~-~~~G~WsSyPPH~Hd~~~~~~e~~leEiYyf~~~p~~Gfg~q~~y~~~~~~d~~~~V~~~d~V~iP~gy 226 (261)
T PF04962_consen 148 ASRLVVGETI-TPGGNWSSYPPHKHDRRMEPDETELEEIYYFRFNPPQGFGFQRVYTDDPQLDEHYVVRNGDAVLIPSGY 226 (261)
T ss_dssp -SS-EEEEEE-ETTT-EES-SEEE-CCEEEESEECTEEEEEEESSTTS-EEEEEEE-TTSSSEEEEEEETTEEEEESTTB
T ss_pred cceEEEEEEE-eCCCccCCcCCccCCCcCCCccccceeEEEEEccCcccEEEEEEECCCCCCcEEEEEECCCEEEeCCCC
Confidence 3456566555 77664 48999966 7777753 2 44443334332 22456899999999999992
Q ss_pred EEEEEe-cCCCcEEEEEEee
Q 018395 97 VTWWYN-KEDTELVVLFLGD 115 (356)
Q Consensus 97 ~H~~~N-~g~e~l~~l~i~~ 115 (356)
|-+.. .|- .+-+|.+.-
T Consensus 227 -Hp~~aapGy-~~Yylw~ma 244 (261)
T PF04962_consen 227 -HPVVAAPGY-DMYYLWVMA 244 (261)
T ss_dssp --SEEEEEES-SEEEEEEEE
T ss_pred -CCcCcCCCc-CcEEEEEEE
Confidence 23332 233 355666554
No 186
>PF02678 Pirin: Pirin; InterPro: IPR003829 This entry represents N-terminal domain of Pirin proteins from both eukaryotes and prokaryotes. The function of Pirin is unknown but the gene coding for this protein is known to be expressed in all tissues in the human body although it is expressed most strongly in the liver and heart. Pirin is known to be a nuclear protein, exclusively localised within the nucleoplasma and predominantly concentrated within dot-like subnuclear structures []. Pirin is composed of two structurally similar domains arranged face to face. The N-terminal domain additionally features four beta-strands, and the C-terminal domain also includes four additional -strands and a short alpha-helix. Although the two domains are similar, the C-terminal domain of Pirin differs from the N-terminal domain as it does not contain a metal binding site and its sequence does not contain the conserved metal-coordinating residues []. Pirin is confirmed to be a member of the cupin superfamily on the basis of primary sequence and structural similarity. The presence of a metal binding site in the N-terminal beta-barrel of Pirin, may be significant in its role in regulating NFI DNA replication and NF-kappaB transcription factor activity []. Pirin structure has been found to closely resemble members of the cupin superfamily. Pirin contains the two characteristic sequences of the cupin superfamily, namely PG-(X)5-HXH-(X)4-E-(X)6-G and G-(X)5-PXG-(X)2-H-(X)3-N separated by a variable stretch of 15-50 amino acids. These motifs are best conserved in the N-terminal where the conserved histidine and glutamic acid residues correspond to the metal-coordinating residues. The C-terminal domain motifs lack the metal binding residues normally associated with the cupin fold []. Pirin was identified to be a metal-binding protein [], and was found that the metal-binding residues of Pirins are highly conserved across mammals, plants, fungi, and prokaryotic organisms. Pirin acts as a cofactor for the transcription factor NFI, the regulatory mechanism of which is generally believed to require the assistance of a metal ion []. Structural data supports the hypothesis that the bound iron of Pirin may participate in this transcriptional regulation by enhancing and stabilising the formation of the p50,Bcl3,DNA complex []. Metals have been implicated directly or indirectly in the NF-kappaB family of transcription factors that control expression of a number of early response genes associated with inflammatory responses, cell growth, cell cycle progression, and neoplastic transformation []. However, most metal-dependent transcription factors are DNA-binding proteins that bind to specific sequences when the metal binds to the protein. Pirin, on the other hand, appears to function differently and bind to the transcription factor DNA complex [].; PDB: 2VEC_A 1J1L_A 3ACL_A 2P17_A 1TQ5_A.
Probab=71.62 E-value=12 Score=30.04 Aligned_cols=61 Identities=20% Similarity=0.093 Sum_probs=43.2
Q ss_pred CCeecccccccCCeeEEEEEeceEEEEEEccCCceEEEEEecCCcEEEEcCC--cEEEEee-CC-CCeEEE
Q 018395 233 KAMCSPGFSCDSALQVTYIVRGSGRAQIVGPDGKRVLETTVKAGNLFIVPRF--YVVSKIA-DP-DGLAWF 299 (356)
Q Consensus 233 g~~~~PH~h~~~A~ei~~v~~G~~~~~iv~~~g~~~~~~~l~~Gdv~vvP~g--~~h~~~~-~~-~~~~~~ 299 (356)
++-+.+|=|.+ -.-+.||++|+. .=.|+.|++ ..|++|||-++=+| ..|...+ +. ..++.+
T Consensus 39 ~~gf~~HPH~g-~eivTyv~~G~~--~H~Ds~G~~---~~l~~G~vq~m~AG~Gi~H~E~~~~~~~~~~~l 103 (107)
T PF02678_consen 39 GAGFPMHPHRG-FEIVTYVLEGEL--RHRDSLGNR---GVLRAGDVQWMTAGSGIVHSERNASDGGPLHGL 103 (107)
T ss_dssp TTEEEEEEECS-EEEEEEEEESEE--EEEETTSEE---EEEETTEEEEEE-TTTEEEEEEE-TSSS-EEEE
T ss_pred CCCCCCcCCCC-ceEEEEEecCEE--EEECCCCCe---eEeCCCeEEEEeCCCCceEEEecCCCCCeEEEE
Confidence 45578999988 888899999976 444888866 57999999888765 5566644 33 356554
No 187
>PF07847 DUF1637: Protein of unknown function (DUF1637); InterPro: IPR012864 This entry represents cysteamine dioxygenase, which is a non-heme iron protein that is involved in the biosynthesis of taurine. Requires catalytic amounts of a cofactor-like compound, such as sulphur, sulphide, selenium or methylene blue for maximal activity. 3-Aminopropanethiol (homocysteamine) and 2-mercaptoethanol can also act as substrates, but glutathione, cysteine, and cysteine ethyl- and methyl esters are not good substrates [, ]. ; GO: 0047800 cysteamine dioxygenase activity, 0055114 oxidation-reduction process
Probab=70.67 E-value=21 Score=32.09 Aligned_cols=83 Identities=10% Similarity=0.010 Sum_probs=60.9
Q ss_pred cCceeEEEEecCCCeecccccccCCeeEEEEEeceEEEEEEccCC---------ceEEEEE------ec-CCc-EEEEcC
Q 018395 221 VGCGADLVRLDGKAMCSPGFSCDSALQVTYIVRGSGRAQIVGPDG---------KRVLETT------VK-AGN-LFIVPR 283 (356)
Q Consensus 221 l~~s~~~v~l~~g~~~~PH~h~~~A~ei~~v~~G~~~~~iv~~~g---------~~~~~~~------l~-~Gd-v~vvP~ 283 (356)
-.+++...-|.+|+..++|=||. =+-+.-|+.|++++.-.+.-. .+...++ +. +++ .+.-|+
T Consensus 42 ~~fsi~iF~lp~g~~IPLHDHP~-M~v~sKvL~Gs~~v~Syd~~~~~~~~~~~~~~~~~a~~~~d~~~~a~~~~~vL~P~ 120 (200)
T PF07847_consen 42 EDFSIGIFCLPPGAVIPLHDHPG-MTVLSKVLYGSLHVKSYDWVDEPSDSIEGQRQPRLARLVVDGEMTAPSDTCVLYPT 120 (200)
T ss_pred CCcEEEEEEeCCCCEeCCCCCCc-hHhhHhhEeeeEEEEEccccccccccccccccceeeEEEecceecCCCCCeEEccC
Confidence 36888899999999999999998 888999999999998877532 0111111 22 223 445566
Q ss_pred C--cEEEEeeCCCCeEEEEEEcC
Q 018395 284 F--YVVSKIADPDGLAWFSIITT 304 (356)
Q Consensus 284 g--~~h~~~~~~~~~~~~~~~~~ 304 (356)
. -+|.+.|..+++.|+-++..
T Consensus 121 ~ggNiH~f~a~~~p~AflDIL~P 143 (200)
T PF07847_consen 121 SGGNIHEFTALTGPCAFLDILAP 143 (200)
T ss_pred CCCeeEEEEeCCCCeEEEEEccC
Confidence 4 89999887788999888753
No 188
>PRK10402 DNA-binding transcriptional activator YeiL; Provisional
Probab=70.45 E-value=9.2 Score=34.51 Aligned_cols=56 Identities=14% Similarity=0.096 Sum_probs=41.4
Q ss_pred eEEEEecCCCeecccccccCCeeEEEEEeceEEEEEEccCCceEEEEEecCCcEEEEc
Q 018395 225 ADLVRLDGKAMCSPGFSCDSALQVTYIVRGSGRAQIVGPDGKRVLETTVKAGNLFIVP 282 (356)
Q Consensus 225 ~~~v~l~~g~~~~PH~h~~~A~ei~~v~~G~~~~~iv~~~g~~~~~~~l~~Gdv~vvP 282 (356)
+....+++|-+.-..=- . ...+.+|++|.+++...+.+|+..+-.-+.+||+|-..
T Consensus 31 ~~~~~~~kge~l~~~G~-~-~~~~y~V~~G~v~v~~~~~~G~e~~~~~~~~g~~~G~~ 86 (226)
T PRK10402 31 TELFHFLAREYIVQEGQ-Q-PSYLFYLTRGRAKLYATLANGKVSLIDFFAAPCFIGEI 86 (226)
T ss_pred hhheeeCCCCEEEcCCC-C-CceEEEEEeCEEEEEEECCCCCEeeeeecCCCCeEEee
Confidence 34456777766632222 2 45799999999999999999988777789999988643
No 189
>cd00038 CAP_ED effector domain of the CAP family of transcription factors; members include CAP (or cAMP receptor protein (CRP)), which binds cAMP, FNR (fumarate and nitrate reduction), which uses an iron-sulfur cluster to sense oxygen) and CooA, a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. Cyclic nucleotide-binding domain similar to CAP are also present in cAMP- and cGMP-dependent protein kinases (cAPK and cGPK) and vertebrate cyclic nucleotide-gated ion-channels. Cyclic nucleotide-monophosphate binding domain; proteins that bind cyclic nucleotides (cAMP or cGMP) share a structural domain of about 120 residues; the best studied is the prokaryotic catabolite gene activator, CAP, where such a domain is known to be composed of three alpha-helices and a distinctive eight-stranded, antiparallel beta-barrel structure; three conserved glycine residues are thought to be essential for maintenance of
Probab=68.58 E-value=17 Score=27.55 Aligned_cols=53 Identities=15% Similarity=0.048 Sum_probs=36.4
Q ss_pred EEEEecCCCcccCeeeCCCEEEEEEeCeEEEEEEcCCCceE-EEEEcCCCEEEe
Q 018395 40 AKLALEKNGFALPHYCDSARVAYVLQGSGVAGIVLPEKEEK-VVAIKKGDGIAL 92 (356)
Q Consensus 40 ~~~~l~Pg~~~~pH~h~a~e~~yVl~G~~~~~vv~~~~~~~-~~~l~~GDv~~i 92 (356)
...++++|......--..+.+++|++|...+....+++++. ...+.+||++-.
T Consensus 18 ~~~~~~~g~~l~~~~~~~~~~~~i~~G~v~~~~~~~~g~~~~~~~~~~g~~~g~ 71 (115)
T cd00038 18 EERRFPAGEVIIRQGDPADSLYIVLSGSVEVYKLDEDGREQIVGFLGPGDLFGE 71 (115)
T ss_pred eeeeeCCCCEEEcCCCCCCeEEEEEeCEEEEEEECCCCcEEEEEecCCccCcCh
Confidence 45677777755322225678999999999998877665433 467788887743
No 190
>TIGR03697 NtcA_cyano global nitrogen regulator NtcA, cyanobacterial. Members of this protein family, found in the cyanobacteria, are the global nitrogen regulator NtcA. This DNA-binding transcriptional regulator is required for expressing many different ammonia-repressible genes. The consensus NtcA-binding site is G T A N(8)T A C.
Probab=68.51 E-value=11 Score=32.76 Aligned_cols=36 Identities=19% Similarity=0.314 Sum_probs=31.2
Q ss_pred CeeEEEEEeceEEEEEEccCCceEEEEEecCCcEEE
Q 018395 245 ALQVTYIVRGSGRAQIVGPDGKRVLETTVKAGNLFI 280 (356)
Q Consensus 245 A~ei~~v~~G~~~~~iv~~~g~~~~~~~l~~Gdv~v 280 (356)
+..+.+|++|.+++...+++|+...-..+.+||+|=
T Consensus 11 ~~~~~~i~~G~v~~~~~~~~G~e~~l~~~~~g~~~G 46 (193)
T TIGR03697 11 AEKVYFLRRGAVKLSRVYESGEEITVALLRENSVFG 46 (193)
T ss_pred CCcEEEEEecEEEEEEeCCCCcEeeeEEccCCCEee
Confidence 457999999999999999999887667899999874
No 191
>PF02373 JmjC: JmjC domain, hydroxylase; InterPro: IPR013129 Jumonji protein is required for neural tube formation in mice [].There is evidence of domain swapping within the jumonji family of transcription factors []. This domain is often associated with jmjN (see IPR003349 from INTERPRO) and belongs to the Cupin superfamily [].; PDB: 2YU2_A 2YU1_A 3AVR_A 3AVS_A 2OX0_B 2OQ6_B 2WWJ_A 2Q8D_A 3PDQ_A 2YBK_A ....
Probab=68.28 E-value=11 Score=29.66 Aligned_cols=25 Identities=16% Similarity=0.159 Sum_probs=17.3
Q ss_pred eEEEEEecCCcEEEEcCCcEEEEee
Q 018395 267 RVLETTVKAGNLFIVPRFYVVSKIA 291 (356)
Q Consensus 267 ~~~~~~l~~Gdv~vvP~g~~h~~~~ 291 (356)
+.+...-++||.+++|+|..|...+
T Consensus 79 ~~~~~~Q~~Ge~V~i~pg~~H~v~n 103 (114)
T PF02373_consen 79 PVYRFVQKPGEFVFIPPGAYHQVFN 103 (114)
T ss_dssp --EEEEEETT-EEEE-TT-EEEEEE
T ss_pred ccccceECCCCEEEECCCceEEEEe
Confidence 4556688999999999999999854
No 192
>smart00100 cNMP Cyclic nucleotide-monophosphate binding domain. Catabolite gene activator protein (CAP) is a prokaryotic homologue of eukaryotic cNMP-binding domains, present in ion channels, and cNMP-dependent kinases.
Probab=67.95 E-value=14 Score=28.20 Aligned_cols=55 Identities=18% Similarity=0.128 Sum_probs=40.0
Q ss_pred EEEEecCCCeecccccccCCeeEEEEEeceEEEEEEccCCceEEEEEecCCcEEEEc
Q 018395 226 DLVRLDGKAMCSPGFSCDSALQVTYIVRGSGRAQIVGPDGKRVLETTVKAGNLFIVP 282 (356)
Q Consensus 226 ~~v~l~~g~~~~PH~h~~~A~ei~~v~~G~~~~~iv~~~g~~~~~~~l~~Gdv~vvP 282 (356)
....+.+|-..- +-.-. .+.+.+|++|.+++...+.+|+......+.+||++-..
T Consensus 18 ~~~~~~~g~~l~-~~g~~-~~~~y~v~~G~v~~~~~~~~g~~~~~~~~~~g~~~g~~ 72 (120)
T smart00100 18 EPVRYPAGEVII-RQGDV-GDSFYIILSGEVRVYKVLEDGREQILGILGPGDFFGEL 72 (120)
T ss_pred eEEEeCCCCEEE-eCCCc-CCcEEEEEeeEEEEEEECCCCceEEEEeecCCceechh
Confidence 445677776542 22222 56799999999999998888877777789999987544
No 193
>COG1741 Pirin-related protein [General function prediction only]
Probab=67.41 E-value=14 Score=34.84 Aligned_cols=56 Identities=14% Similarity=0.078 Sum_probs=44.7
Q ss_pred EEEecCCCeecccccccCCeeEEEEEeceEEEEEEccCCceEEEEEecCCcEEEEcCCcEEE
Q 018395 227 LVRLDGKAMCSPGFSCDSALQVTYIVRGSGRAQIVGPDGKRVLETTVKAGNLFIVPRFYVVS 288 (356)
Q Consensus 227 ~v~l~~g~~~~PH~h~~~A~ei~~v~~G~~~~~iv~~~g~~~~~~~l~~Gdv~vvP~g~~h~ 288 (356)
...+.||.-+.||=|.. =.-+.||++|+.+ =-|+.|++ ..+++|||-.+=+|....
T Consensus 48 ~~~~~pG~~f~pHPHrg-~etvTyvl~G~i~--HrDS~Gn~---~~i~pGdvqwMTAG~GI~ 103 (276)
T COG1741 48 PDVLAPGRGFPPHPHRG-LETVTYVLDGEIE--HRDSLGNK---GVIRPGDVQWMTAGSGIV 103 (276)
T ss_pred cccccCCCcCCCCCCCC-cEEEEEEEccEEE--EeecCCce---eeecccceeEEcCCCcee
Confidence 44688998899999998 8889999999954 44666665 469999999998876544
No 194
>smart00100 cNMP Cyclic nucleotide-monophosphate binding domain. Catabolite gene activator protein (CAP) is a prokaryotic homologue of eukaryotic cNMP-binding domains, present in ion channels, and cNMP-dependent kinases.
Probab=67.26 E-value=22 Score=26.93 Aligned_cols=53 Identities=13% Similarity=0.013 Sum_probs=37.3
Q ss_pred EEEEecCCCcccCeee-CCCEEEEEEeCeEEEEEEcCCCce-EEEEEcCCCEEEeC
Q 018395 40 AKLALEKNGFALPHYC-DSARVAYVLQGSGVAGIVLPEKEE-KVVAIKKGDGIALP 93 (356)
Q Consensus 40 ~~~~l~Pg~~~~pH~h-~a~e~~yVl~G~~~~~vv~~~~~~-~~~~l~~GDv~~iP 93 (356)
...++.+|..+ .+-. ..+.+++|++|...+...+.+++. ....+.+||.+-..
T Consensus 18 ~~~~~~~g~~l-~~~g~~~~~~y~v~~G~v~~~~~~~~g~~~~~~~~~~g~~~g~~ 72 (120)
T smart00100 18 EPVRYPAGEVI-IRQGDVGDSFYIILSGEVRVYKVLEDGREQILGILGPGDFFGEL 72 (120)
T ss_pred eEEEeCCCCEE-EeCCCcCCcEEEEEeeEEEEEEECCCCceEEEEeecCCceechh
Confidence 34677888754 3333 678899999999999876555543 35677889877443
No 195
>KOG3995 consensus 3-hydroxyanthranilate oxygenase HAAO [Amino acid transport and metabolism]
Probab=66.06 E-value=8 Score=34.79 Aligned_cols=49 Identities=16% Similarity=0.400 Sum_probs=40.1
Q ss_pred cccccCCeeEEEEEeceEEEEEEccCCceEEEEEecCCcEEEEcCCcEEEE
Q 018395 239 GFSCDSALQVTYIVRGSGRAQIVGPDGKRVLETTVKAGNLFIVPRFYVVSK 289 (356)
Q Consensus 239 H~h~~~A~ei~~v~~G~~~~~iv~~~g~~~~~~~l~~Gdv~vvP~g~~h~~ 289 (356)
-||.+...|+.|=.+|....-+++..-.+ +-.+++||+|..|+..+|.-
T Consensus 47 dyHieegeE~FyQ~KGdMvLKVie~g~~r--DivI~qGe~flLParVpHSP 95 (279)
T KOG3995|consen 47 DYHIEEGEEVFYQLKGDMVLKVLEQGKHR--DVVIRQGEIFLLPARVPHSP 95 (279)
T ss_pred ccccCCcchhheeecCceEEeeeccCcce--eeEEecCcEEEeccCCCCCh
Confidence 34555578999999999999999865323 66899999999999999974
No 196
>PRK00924 5-keto-4-deoxyuronate isomerase; Provisional
Probab=65.51 E-value=52 Score=31.13 Aligned_cols=78 Identities=9% Similarity=0.050 Sum_probs=48.0
Q ss_pred CceEEEEEEecCCC---cccCeee-CCCEEEEEEe---CeEEEEEEcCCCceEEEEEcCCCEEEeCCCcEEEEEecCCCc
Q 018395 35 GNIGAAKLALEKNG---FALPHYC-DSARVAYVLQ---GSGVAGIVLPEKEEKVVAIKKGDGIALPFGVVTWWYNKEDTE 107 (356)
Q Consensus 35 ~~~~~~~~~l~Pg~---~~~pH~h-~a~e~~yVl~---G~~~~~vv~~~~~~~~~~l~~GDv~~iP~G~~H~~~N~g~e~ 107 (356)
..+-++...+.||+ ..+||.| +..|.+|--. +.-...+..+-+..+...++-+|++..|+=.+|.-..+++
T Consensus 173 ~qLlmG~tvltPGg~WSSyPPHkHDrr~E~YlYf~l~~~qrV~h~mG~pdETrh~~v~n~~aVisP~wsih~g~gt~~-- 250 (276)
T PRK00924 173 CQLVMGLTELEPGSVWNTMPCHTHDRRMEVYFYFDMPEDARVFHFMGEPQETRHIVVHNEQAVISPSWSIHSGVGTSN-- 250 (276)
T ss_pred ccEEEEEEEEcCCCCCCCCCCccCCCCcceEEEEEcCCCceEEecCCCccceeeEEEECCCEEECCCcceecCcCccc--
Confidence 46777878889999 4599999 4556444221 2111111111112223789999999999999998665544
Q ss_pred EEEEEEe
Q 018395 108 LVVLFLG 114 (356)
Q Consensus 108 l~~l~i~ 114 (356)
-.||+..
T Consensus 251 y~fiw~m 257 (276)
T PRK00924 251 YTFIWGM 257 (276)
T ss_pred cEEEEEe
Confidence 3455543
No 197
>PRK09685 DNA-binding transcriptional activator FeaR; Provisional
Probab=65.33 E-value=29 Score=32.49 Aligned_cols=62 Identities=8% Similarity=0.079 Sum_probs=41.1
Q ss_pred ceeEEEEecCCCee-c----ccccccCCeeEEEEEeceEEEEEEccCCceEEEEEecCCcEEEEcCCcEEEEee
Q 018395 223 CGADLVRLDGKAMC-S----PGFSCDSALQVTYIVRGSGRAQIVGPDGKRVLETTVKAGNLFIVPRFYVVSKIA 291 (356)
Q Consensus 223 ~s~~~v~l~~g~~~-~----PH~h~~~A~ei~~v~~G~~~~~iv~~~g~~~~~~~l~~Gdv~vvP~g~~h~~~~ 291 (356)
+.+.++...+..+. . -|.+.. ...++++++|++++.+- |+ ...+.+||++++|.+.+|.+..
T Consensus 45 ~~l~~~~~~~~~~~R~~~~i~~~~~~-~~~l~~~~~G~~~~~~~---g~---~~~l~~G~~~l~~~~~p~~~~~ 111 (302)
T PRK09685 45 LKLSTVTTNAVNLSRTWQEIKHSDDA-HFFTVFQLSGHAIIEQD---DR---QVQLAAGDITLIDASRPCSIYP 111 (302)
T ss_pred EEEEEEecCCceEEeChHHhccCCCC-cEEEEEEecceEEEEEC---Ce---EEEEcCCCEEEEECCCCcEeec
Confidence 55666665554332 2 233334 45677889999887643 22 2579999999999999997643
No 198
>PLN02868 acyl-CoA thioesterase family protein
Probab=64.94 E-value=20 Score=35.73 Aligned_cols=54 Identities=9% Similarity=0.076 Sum_probs=40.7
Q ss_pred EEEEEecCCCcccCeeeCCCEEEEEEeCeEEEEEEcCCCceEEEEEcCCCEEEe
Q 018395 39 AAKLALEKNGFALPHYCDSARVAYVLQGSGVAGIVLPEKEEKVVAIKKGDGIAL 92 (356)
Q Consensus 39 ~~~~~l~Pg~~~~pH~h~a~e~~yVl~G~~~~~vv~~~~~~~~~~l~~GDv~~i 92 (356)
+...++++|..+..-=...+.+++|++|+.++.....++......+++||++-.
T Consensus 31 ~~~~~~~~Ge~I~~~Gd~~~~lyiI~~G~V~v~~~~~~ge~~l~~l~~Gd~fG~ 84 (413)
T PLN02868 31 VVPKRYGKGEYVVREGEPGDGLYFIWKGEAEVSGPAEEESRPEFLLKRYDYFGY 84 (413)
T ss_pred ceEEEECCCCEEEeCCCcCceEEEEEeCEEEEEEECCCCcEEEEEeCCCCEeeh
Confidence 345678888766444347788999999999998877766545678899998873
No 199
>PF05118 Asp_Arg_Hydrox: Aspartyl/Asparaginyl beta-hydroxylase; InterPro: IPR007803 The alpha-ketoglutarate-dependent dioxygenase aspartyl (asparaginyl) beta-hydroxylase (1.14.11.16 from EC) specifically hydroxylates one aspartic or asparagine residue in certain epidermal growth factor-like domains of a number of proteins. Its action may be due to histidine-675, which, when mutated to an alanine residue, causes the loss of enzymatic activity in the protein []. An invertebrate alpha-ketoglutarate-dependent aspartyl/asparaginyl beta-hydroxylase, which posttranslationally hydroxylates specific aspartyl or asparaginyl residues within epidermal growth factor-like modules [], activity was found to be similar to that of the purified mammalian aspartyl/asparaginyl beta-hydroxylase with respect to cofactor requirements, stereochemistry and substrate sequence specificity []. This enzyme requires Fe2+ as a cofactor. Some vitamin K-dependent coagulation factors, as well as synthetic peptides based on the structure of the first epidermal growth factor domain of human coagulation factor IX or X, can act as acceptors.; GO: 0018193 peptidyl-amino acid modification, 0030176 integral to endoplasmic reticulum membrane; PDB: 3RCQ_A 1E5S_A 1E5R_B.
Probab=64.83 E-value=46 Score=28.67 Aligned_cols=68 Identities=9% Similarity=0.028 Sum_probs=35.6
Q ss_pred eeEEEEecCCCeecccccccCC-eeEEEEEece-EEEEEEccCCceEEEEEecCCcEEEEcCCcEEEEee-CCCC
Q 018395 224 GADLVRLDGKAMCSPGFSCDSA-LQVTYIVRGS-GRAQIVGPDGKRVLETTVKAGNLFIVPRFYVVSKIA-DPDG 295 (356)
Q Consensus 224 s~~~v~l~~g~~~~PH~h~~~A-~ei~~v~~G~-~~~~iv~~~g~~~~~~~l~~Gdv~vvP~g~~h~~~~-~~~~ 295 (356)
.+....|.||+...||.-+.++ ..+-+-+... ..+.+... .. ....++|+++++=-.+.|...| |++.
T Consensus 81 ~~~~s~l~pg~~I~pH~d~~~~~lR~Hl~L~~p~~~~~~~v~--~~--~~~w~~G~~~~fD~s~~H~~~N~~~~~ 151 (163)
T PF05118_consen 81 RVRFSRLPPGTHIKPHRDPTNLRLRLHLPLIVPNPGCYIRVG--GE--TRHWREGECWVFDDSFEHEVWNNGDED 151 (163)
T ss_dssp EEEEEEEECTEEEEEE-SS-TTEEEEEEEEC--STTEEEEET--TE--EEB--CTEEEEE-TTS-EEEEESSSS-
T ss_pred hEEEEEECCCCEECCeeCCCCcceEEEEEEEcCCCCeEEEEC--Ce--EEEeccCcEEEEeCCEEEEEEeCCCCC
Confidence 3566688999999999976511 1122222220 11222221 12 2468999999999999999944 6554
No 200
>COG3508 HmgA Homogentisate 1,2-dioxygenase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=64.61 E-value=58 Score=31.85 Aligned_cols=62 Identities=18% Similarity=0.202 Sum_probs=43.2
Q ss_pred CceeEEEEecCCCee-cccccccCCeeEEEEEeceEEEEEEccCCceEEEEEecCCcEEEEcCCcEEEEee
Q 018395 222 GCGADLVRLDGKAMC-SPGFSCDSALQVTYIVRGSGRAQIVGPDGKRVLETTVKAGNLFIVPRFYVVSKIA 291 (356)
Q Consensus 222 ~~s~~~v~l~~g~~~-~PH~h~~~A~ei~~v~~G~~~~~iv~~~g~~~~~~~l~~Gdv~vvP~g~~h~~~~ 291 (356)
|+++..-.++ -+|. .-.++.+ ..+++|+-.|+++ +++.-| + -+|++||+.|||+|.-....-
T Consensus 124 g~~i~~y~~n-~sm~~~~f~NAD-ge~Livpq~G~l~--l~te~G--~--l~v~pgeiavIPRG~~frve~ 186 (427)
T COG3508 124 GVAIHVYKVN-ESMTKRFFRNAD-GELLIVPQQGELR--LKTELG--V--LEVEPGEIAVIPRGTTFRVEL 186 (427)
T ss_pred ceEEEEEEcc-ccchhhhhhcCC-CCEEEEeecceEE--EEEeec--e--EEecCCcEEEeeCCceEEEEe
Confidence 5554433333 4465 5667888 8888888888765 455555 2 269999999999999877643
No 201
>PRK10402 DNA-binding transcriptional activator YeiL; Provisional
Probab=64.60 E-value=18 Score=32.63 Aligned_cols=54 Identities=7% Similarity=-0.015 Sum_probs=39.7
Q ss_pred EEEEecCCCcccCeeeCCCEEEEEEeCeEEEEEEcCCCceE-EEEEcCCCEEEeC
Q 018395 40 AKLALEKNGFALPHYCDSARVAYVLQGSGVAGIVLPEKEEK-VVAIKKGDGIALP 93 (356)
Q Consensus 40 ~~~~l~Pg~~~~pH~h~a~e~~yVl~G~~~~~vv~~~~~~~-~~~l~~GDv~~iP 93 (356)
....+++|......--..+.+++|++|.+++...+.+|++. ...+.+||++-..
T Consensus 32 ~~~~~~kge~l~~~G~~~~~~y~V~~G~v~v~~~~~~G~e~~~~~~~~g~~~G~~ 86 (226)
T PRK10402 32 ELFHFLAREYIVQEGQQPSYLFYLTRGRAKLYATLANGKVSLIDFFAAPCFIGEI 86 (226)
T ss_pred hheeeCCCCEEEcCCCCCceEEEEEeCEEEEEEECCCCCEeeeeecCCCCeEEee
Confidence 34567777765433336788999999999999888877654 3567899988643
No 202
>PRK14584 hmsS hemin storage system protein; Provisional
Probab=60.11 E-value=19 Score=30.86 Aligned_cols=44 Identities=16% Similarity=0.326 Sum_probs=34.2
Q ss_pred cccCcHHHHHhhccCCHHHHHHhhccc-------CCceEEEcCCCCcCCCC
Q 018395 137 FTGFSTEFVSRAWDLDENTVKTLVGKQ-------TGKGIVKLDANAKLPEP 180 (356)
Q Consensus 137 l~~~~~~vl~~af~~~~~~~~~l~~~q-------~~~~iv~~~~~~~~~~p 180 (356)
-..++.+-+|..|+++.+.++++++++ +.|-|+.++..+..+.|
T Consensus 96 ~~~l~~dElA~sF~l~~e~i~qLr~~kiltVh~De~G~Ii~V~~~~~~p~p 146 (153)
T PRK14584 96 RPDLDDDELASSFALSPELIAQLKSGSCLTLYNDEHGHIIDVKEGLQLPEP 146 (153)
T ss_pred CCCCChHHHHHHcCCCHHHHHHHHhCCeEEEEECCCCCEEEeecCCCCCCc
Confidence 346899999999999999999998764 35678888766555544
No 203
>COG0664 Crp cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases [Signal transduction mechanisms]
Probab=59.93 E-value=26 Score=30.24 Aligned_cols=59 Identities=12% Similarity=-0.036 Sum_probs=41.9
Q ss_pred EEEEEEecCCCcccCeeeCCCEEEEEEeCeEEEEEEcCCCceEE-EEEcCCCEEEeCCCc
Q 018395 38 GAAKLALEKNGFALPHYCDSARVAYVLQGSGVAGIVLPEKEEKV-VAIKKGDGIALPFGV 96 (356)
Q Consensus 38 ~~~~~~l~Pg~~~~pH~h~a~e~~yVl~G~~~~~vv~~~~~~~~-~~l~~GDv~~iP~G~ 96 (356)
......+++|......--.++.+++|++|...+....++|++.. ..+.+||.+-..+-.
T Consensus 22 ~~~~~~~~~g~~l~~~g~~~~~~y~v~~G~v~~~~~~~~G~~~~~~~~~~g~~fg~~~l~ 81 (214)
T COG0664 22 KLEVRKLPKGEVLFTEGEEADSLYIILSGIVKLYANTEDGREIILGFLGPGDFFGELALL 81 (214)
T ss_pred hceeEeeCCCCEEEcCCCcCceEEEEEEeEEEEEEECCCCcEEEEEEecCCchhhhHHHh
Confidence 44567777775443333366779999999999999888776553 458999998666433
No 204
>PHA02890 hypothetical protein; Provisional
Probab=58.43 E-value=46 Score=30.97 Aligned_cols=53 Identities=11% Similarity=0.122 Sum_probs=40.5
Q ss_pred EEEEEeCeEEEEEEcCCCceEEEEEcCCCEEEeCCCcEEEEEecCCCcEEEEEEeeC
Q 018395 60 VAYVLQGSGVAGIVLPEKEEKVVAIKKGDGIALPFGVVTWWYNKEDTELVVLFLGDT 116 (356)
Q Consensus 60 ~~yVl~G~~~~~vv~~~~~~~~~~l~~GDv~~iP~G~~H~~~N~g~e~l~~l~i~~~ 116 (356)
++.+++|++.+.+.. ++++.+..+.+||.|.+--+.-|.+.- ..+.++.+...
T Consensus 95 FVlCL~Gs~~In~~~-~d~~iS~~I~kGeaF~mdv~t~H~i~T---Knl~L~Viky~ 147 (278)
T PHA02890 95 FVACIEGSCKINVNI-GDREISDHIHENQGFIMDVGLDHAIDS---DNVGLFITKFE 147 (278)
T ss_pred EEEEeCCeEEEEEec-CCceeeeeeecCceEEEEccceEEEEc---cceeEEEEEEE
Confidence 445789999999754 446678999999999999999999876 33555554443
No 205
>PRK11161 fumarate/nitrate reduction transcriptional regulator; Provisional
Probab=56.61 E-value=24 Score=31.70 Aligned_cols=52 Identities=12% Similarity=0.029 Sum_probs=38.2
Q ss_pred EEecCCCeecccccccCCeeEEEEEeceEEEEEEccCCceEEEEEecCCcEEEE
Q 018395 228 VRLDGKAMCSPGFSCDSALQVTYIVRGSGRAQIVGPDGKRVLETTVKAGNLFIV 281 (356)
Q Consensus 228 v~l~~g~~~~PH~h~~~A~ei~~v~~G~~~~~iv~~~g~~~~~~~l~~Gdv~vv 281 (356)
..+.+|-+.-.-= -. +..+.+|++|.+++...+++|+..+-.-+.+||++-.
T Consensus 40 ~~~~kge~l~~~G-d~-~~~ly~v~~G~v~~~~~~~~G~e~i~~~~~~gd~~g~ 91 (235)
T PRK11161 40 KPIQKGQTLFKAG-DE-LKSLYAIRSGTIKSYTITEQGDEQITGFHLAGDLVGF 91 (235)
T ss_pred eeecCCCEeECCC-CC-cceEEEEeeceEEEEEECCCCCEEEEEeccCCceecc
Confidence 3566666553222 12 5678999999999999999998876667789999853
No 206
>PRK11161 fumarate/nitrate reduction transcriptional regulator; Provisional
Probab=55.26 E-value=38 Score=30.43 Aligned_cols=51 Identities=10% Similarity=0.071 Sum_probs=37.5
Q ss_pred EEecCCCcccCeeeCCCEEEEEEeCeEEEEEEcCCCceEEE-EEcCCCEEEe
Q 018395 42 LALEKNGFALPHYCDSARVAYVLQGSGVAGIVLPEKEEKVV-AIKKGDGIAL 92 (356)
Q Consensus 42 ~~l~Pg~~~~pH~h~a~e~~yVl~G~~~~~vv~~~~~~~~~-~l~~GDv~~i 92 (356)
.++++|.....---..+.+++|++|..++...+++|++... -+.+||++-.
T Consensus 40 ~~~~kge~l~~~Gd~~~~ly~v~~G~v~~~~~~~~G~e~i~~~~~~gd~~g~ 91 (235)
T PRK11161 40 KPIQKGQTLFKAGDELKSLYAIRSGTIKSYTITEQGDEQITGFHLAGDLVGF 91 (235)
T ss_pred eeecCCCEeECCCCCcceEEEEeeceEEEEEECCCCCEEEEEeccCCceecc
Confidence 46777775543333678899999999999988887766543 4589999854
No 207
>PRK02290 3-dehydroquinate synthase; Provisional
Probab=54.17 E-value=81 Score=30.75 Aligned_cols=57 Identities=23% Similarity=0.334 Sum_probs=48.2
Q ss_pred CceEEEEEEecCCCcccCeee-CCCEEEEEEeCeEEEEEEcCCCc-eEEEEEcCCCEEE
Q 018395 35 GNIGAAKLALEKNGFALPHYC-DSARVAYVLQGSGVAGIVLPEKE-EKVVAIKKGDGIA 91 (356)
Q Consensus 35 ~~~~~~~~~l~Pg~~~~pH~h-~a~e~~yVl~G~~~~~vv~~~~~-~~~~~l~~GDv~~ 91 (356)
.-.-+++++++..-++.-+-. +...+-.++|.-=++.++.++|+ ..+.+|++||-+.
T Consensus 265 R~~~VGRvKIE~RPL~lIeAe~~g~~~~viLQnaetIrlv~~dG~~vsVt~Lk~GD~VL 323 (344)
T PRK02290 265 REAIVGRVKIEKRPLLLIEAEYGGKRIRTILQNAETIRLVTPDGKPVSVVDLKPGDEVL 323 (344)
T ss_pred EEEEeeEEEEeeccEEEEEEEeCCeEEEEEEecCcEEEEECCCCCEeeeeecCCCCEEE
Confidence 345678999998888887776 88999999999999999999886 3468999999764
No 208
>COG0664 Crp cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases [Signal transduction mechanisms]
Probab=53.68 E-value=26 Score=30.31 Aligned_cols=59 Identities=14% Similarity=0.106 Sum_probs=43.3
Q ss_pred eeEEEEecCCCeecccccccCCeeEEEEEeceEEEEEEccCCceEEEEEecCCcEEEEcCC
Q 018395 224 GADLVRLDGKAMCSPGFSCDSALQVTYIVRGSGRAQIVGPDGKRVLETTVKAGNLFIVPRF 284 (356)
Q Consensus 224 s~~~v~l~~g~~~~PH~h~~~A~ei~~v~~G~~~~~iv~~~g~~~~~~~l~~Gdv~vvP~g 284 (356)
......+.+|...--.=-+ +..+.+|++|.+++...+++|+..+-..+.+||+|-...-
T Consensus 22 ~~~~~~~~~g~~l~~~g~~--~~~~y~v~~G~v~~~~~~~~G~~~~~~~~~~g~~fg~~~l 80 (214)
T COG0664 22 KLEVRKLPKGEVLFTEGEE--ADSLYIILSGIVKLYANTEDGREIILGFLGPGDFFGELAL 80 (214)
T ss_pred hceeEeeCCCCEEEcCCCc--CceEEEEEEeEEEEEEECCCCcEEEEEEecCCchhhhHHH
Confidence 3455566666554333222 5568999999999999999998877778999999966643
No 209
>PHA02984 hypothetical protein; Provisional
Probab=53.63 E-value=72 Score=29.93 Aligned_cols=60 Identities=22% Similarity=0.195 Sum_probs=43.4
Q ss_pred CCCE--EEEEEeCeEEEEEEcCCCceEEEEEcCCCEEEeCCCcEEEEEecCCCcEEEEEEeeCC
Q 018395 56 DSAR--VAYVLQGSGVAGIVLPEKEEKVVAIKKGDGIALPFGVVTWWYNKEDTELVVLFLGDTS 117 (356)
Q Consensus 56 ~a~e--~~yVl~G~~~~~vv~~~~~~~~~~l~~GDv~~iP~G~~H~~~N~g~e~l~~l~i~~~~ 117 (356)
...| ++.+++|++.+.+... +++.+..+++||.|.+--+.-|.+.-. +..++++.+..+.
T Consensus 90 esnEy~FvlCl~G~~~I~~~~~-~~~is~~I~kGeaf~md~~t~h~i~T~-~knl~L~Vi~y~v 151 (286)
T PHA02984 90 ESNEYMFVLCLNGKTSIECFNK-GSKITNTIKKGEAFTLNLKTKYVTTTK-DKNLHLAVITYTS 151 (286)
T ss_pred eeccEEEEEEcCCeEEEEEecC-CceeeeEEecCceEEEEccceEEEEeC-CCceEEEEEEEEe
Confidence 3445 4457899999987554 455679999999999999999998753 3446665554443
No 210
>TIGR03697 NtcA_cyano global nitrogen regulator NtcA, cyanobacterial. Members of this protein family, found in the cyanobacteria, are the global nitrogen regulator NtcA. This DNA-binding transcriptional regulator is required for expressing many different ammonia-repressible genes. The consensus NtcA-binding site is G T A N(8)T A C.
Probab=52.06 E-value=31 Score=29.72 Aligned_cols=37 Identities=16% Similarity=0.245 Sum_probs=29.9
Q ss_pred CCCEEEEEEeCeEEEEEEcCCCceE-EEEEcCCCEEEe
Q 018395 56 DSARVAYVLQGSGVAGIVLPEKEEK-VVAIKKGDGIAL 92 (356)
Q Consensus 56 ~a~e~~yVl~G~~~~~vv~~~~~~~-~~~l~~GDv~~i 92 (356)
..+.+++|++|...+....++|++. ...+.+||++-.
T Consensus 10 ~~~~~~~i~~G~v~~~~~~~~G~e~~l~~~~~g~~~G~ 47 (193)
T TIGR03697 10 PAEKVYFLRRGAVKLSRVYESGEEITVALLRENSVFGV 47 (193)
T ss_pred CCCcEEEEEecEEEEEEeCCCCcEeeeEEccCCCEeee
Confidence 4677999999999999888887665 467799998743
No 211
>PF14525 AraC_binding_2: AraC-binding-like domain
Probab=51.34 E-value=1.1e+02 Score=25.36 Aligned_cols=41 Identities=17% Similarity=0.174 Sum_probs=30.1
Q ss_pred CeeEEEEEeceEEEEEEccCCceEEEEEecCCcEEEEcCCcEEEEee
Q 018395 245 ALQVTYIVRGSGRAQIVGPDGKRVLETTVKAGNLFIVPRFYVVSKIA 291 (356)
Q Consensus 245 A~ei~~v~~G~~~~~iv~~~g~~~~~~~l~~Gdv~vvP~g~~h~~~~ 291 (356)
---+.+.++|+++++.- | + ...+.+||+++++.+.++.+..
T Consensus 55 ~~~l~~~~~G~~~~~~~---g-~--~~~~~pg~~~l~d~~~~~~~~~ 95 (172)
T PF14525_consen 55 HYLLVLPLSGSARIEQG---G-R--EVELAPGDVVLLDPGQPYRLEF 95 (172)
T ss_pred EEEEEEEccCCEEEEEC---C-E--EEEEcCCeEEEEcCCCCEEEEE
Confidence 44567777788776643 2 2 3579999999999999987643
No 212
>PRK09392 ftrB transcriptional activator FtrB; Provisional
Probab=50.79 E-value=34 Score=30.76 Aligned_cols=51 Identities=8% Similarity=0.010 Sum_probs=36.9
Q ss_pred EEEEecCCCcccCeee-CCCEEEEEEeCeEEEEEEcCCCceEEEEEcCCCEEE
Q 018395 40 AKLALEKNGFALPHYC-DSARVAYVLQGSGVAGIVLPEKEEKVVAIKKGDGIA 91 (356)
Q Consensus 40 ~~~~l~Pg~~~~pH~h-~a~e~~yVl~G~~~~~vv~~~~~~~~~~l~~GDv~~ 91 (356)
...++++|.... +-. ..+.+++|++|...+.....++......+.+||++-
T Consensus 31 ~~~~~~~ge~l~-~~g~~~~~~~~v~~G~v~~~~~~~~~~~~i~~~~~g~~~g 82 (236)
T PRK09392 31 FLQRFPPGTMLI-TEGEPADFLFVVLDGLVELSASSQDRETTLAILRPVSTFI 82 (236)
T ss_pred ceeecCCCCEEE-eCCCccceEEEEEeCEEEEEEcCCCceEEEEEeCCCchhh
Confidence 457788887554 333 778899999999999876554444456778888764
No 213
>PF07385 DUF1498: Protein of unknown function (DUF1498); InterPro: IPR010864 This family consists of several hypothetical bacterial proteins of around 225 residues in length. The function of this family is unknown.; PDB: 3MPB_B 3KMH_A.
Probab=50.77 E-value=1.6e+02 Score=26.89 Aligned_cols=68 Identities=10% Similarity=0.097 Sum_probs=40.0
Q ss_pred EEEecCCCeecccccccCCeeEEEEEe-ceEEEEEEccC--C--------------c-eEEE----EEecCCcEEEEcCC
Q 018395 227 LVRLDGKAMCSPGFSCDSALQVTYIVR-GSGRAQIVGPD--G--------------K-RVLE----TTVKAGNLFIVPRF 284 (356)
Q Consensus 227 ~v~l~~g~~~~PH~h~~~A~ei~~v~~-G~~~~~iv~~~--g--------------~-~~~~----~~l~~Gdv~vvP~g 284 (356)
.+.+.+|=+.+.|+|.. -.|=++.-- |+..+++.... | . +.+. -+|.||+-+-+|+|
T Consensus 91 im~~~~~Q~tP~H~H~~-K~EDIINRGGG~L~i~l~~s~~~~~~~~~~~v~V~~DG~~~t~~aG~~l~L~PGESiTL~Pg 169 (225)
T PF07385_consen 91 IMIVREGQVTPMHFHWK-KMEDIINRGGGNLVIELYNSDPDGELDADTDVTVPVDGIRRTVPAGTQLRLNPGESITLPPG 169 (225)
T ss_dssp EEEE-BT-EEEEEEESS---EEEEEEEES-EEEEEEEB--TTSSB-SS-EEEEETTEEEEE-TT-EEEE-TT-EEEE-TT
T ss_pred heeccCCCcCCcccCcc-hhhheeecCCceEEEEEEeccCCCccccCCCeEEecCCcEEEecCCceEEeCCCCeEeeCCC
Confidence 35678899999999987 555443333 47777877754 2 1 1121 17999999999999
Q ss_pred cEEEEeeCCCC
Q 018395 285 YVVSKIADPDG 295 (356)
Q Consensus 285 ~~h~~~~~~~~ 295 (356)
..|...+..+.
T Consensus 170 ~yH~Fw~e~g~ 180 (225)
T PF07385_consen 170 IYHWFWGEGGD 180 (225)
T ss_dssp EEEEEEE-TTS
T ss_pred CeeeEEecCCC
Confidence 99998775544
No 214
>PF00166 Cpn10: Chaperonin 10 Kd subunit; InterPro: IPR020818 The chaperonins are `helper' molecules required for correct folding and subsequent assembly of some proteins []. These are required for normal cell growth [], and are stress-induced, acting to stabilise or protect disassembled polypeptides under heat-shock conditions. Type I chaperonins present in eubacteria, mitochondria and chloroplasts require the concerted action of 2 proteins, chaperonin 60 (cpn60) and chaperonin 10 (cpn10) []. The 10 kDa chaperonin (cpn10 - or groES in bacteria) exists as a ring-shaped oligomer of between six to eight identical subunits, while the 60 kDa chaperonin (cpn60 - or groEL in bacteria) forms a structure comprising 2 stacked rings, each ring containing 7 identical subunits []. These ring structures assemble by self-stimulation in the presence of Mg2+-ATP. The central cavity of the cylindrical cpn60 tetradecamer provides as isolated environment for protein folding whilst cpn-10 binds to cpn-60 and synchronizes the release of the folded protein in an Mg2+-ATP dependent manner []. The binding of cpn10 to cpn60 inhibits the weak ATPase activity of cpn60. Escherichia coli GroES has also been shown to bind ATP cooperatively, and with an affinity comparable to that of GroEL []. Each GroEL subunit contains three structurally distinct domains: an apical, an intermediate and an equatorial domain. The apical domain contains the binding sites for both GroES and the unfolded protein substrate. The equatorial domain contains the ATP-binding site and most of the oligomeric contacts. The intermediate domain links the apical and equatorial domains and transfers allosteric information between them. The GroEL oligomer is a tetradecamer, cylindrically shaped, that is organised in two heptameric rings stacked back to back. Each GroEL ring contains a central cavity, known as the `Anfinsen cage', that provides an isolated environment for protein folding. The identical 10 kDa subunits of GroES form a dome-like heptameric oligomer in solution. ATP binding to GroES may be important in charging the seven subunits of the interacting GroEL ring with ATP, to facilitate cooperative ATP binding and hydrolysis for substrate protein release.; GO: 0006457 protein folding, 0005737 cytoplasm; PDB: 1PF9_Q 1AON_P 1SX4_T 1SVT_R 2C7D_P 1PCQ_O 2C7C_Q 1GRU_Q 1WNR_F 1P3H_I ....
Probab=50.02 E-value=38 Score=26.32 Aligned_cols=54 Identities=19% Similarity=0.352 Sum_probs=31.7
Q ss_pred cCCCeecccccccCCeeEEEEEe-ceEEEEEEccCCceEEEEEecCCcEEEEcCCcEEEE
Q 018395 231 DGKAMCSPGFSCDSALQVTYIVR-GSGRAQIVGPDGKRVLETTVKAGNLFIVPRFYVVSK 289 (356)
Q Consensus 231 ~~g~~~~PH~h~~~A~ei~~v~~-G~~~~~iv~~~g~~~~~~~l~~Gdv~vvP~g~~h~~ 289 (356)
+.+|+..|--... ......|+. |.++.. .+|.. ....+++||.+++|.+..--+
T Consensus 20 T~~GiiLp~~~~~-~~~~G~VvaVG~G~~~---~~g~~-~~~~vk~GD~Vl~~~~~g~~v 74 (93)
T PF00166_consen 20 TASGIILPESAKE-KPNQGKVVAVGPGRYN---ENGEE-VPMDVKVGDKVLFPKYAGTEV 74 (93)
T ss_dssp CTTSCCE-CCSSS-SEEEEEEEEE-SEEET---TTSSE-EETSS-TTSEEEEETTTSEEE
T ss_pred ecceEEecccccc-ccceeEEEEcCCcccc---CCCcE-eeeeeeeccEEeccccCceEE
Confidence 4577777743332 233444444 776655 55553 345799999999999986544
No 215
>PF04115 Ureidogly_hydro: Ureidoglycolate hydrolase ; InterPro: IPR007247 Ureidoglycolate hydrolase (3.5.3.19 from EC) carries out the third step in the degradation of allantoin.; GO: 0004848 ureidoglycolate hydrolase activity, 0000256 allantoin catabolic process; PDB: 1YQC_B 1XSR_A 2BDR_B 1XSQ_A.
Probab=48.89 E-value=88 Score=27.06 Aligned_cols=67 Identities=12% Similarity=-0.033 Sum_probs=43.2
Q ss_pred cccccccCCeeEEEEEeceE-EEEEEccCCc-----eEEEEEecCCcEEEEcCCcEEEE-eeCCCCeEEEEEEcC
Q 018395 237 SPGFSCDSALQVTYIVRGSG-RAQIVGPDGK-----RVLETTVKAGNLFIVPRFYVVSK-IADPDGLAWFSIITT 304 (356)
Q Consensus 237 ~PH~h~~~A~ei~~v~~G~~-~~~iv~~~g~-----~~~~~~l~~Gdv~vvP~g~~h~~-~~~~~~~~~~~~~~~ 304 (356)
..=.|+. ++|..+-+.|+. .+-+|.+.+. ++-...+.+|+.+.+=+|.+|.- .+-++...|+.+...
T Consensus 73 ~lERHp~-tsQ~fiPl~~~~~~lvvVA~~~~~Pd~~~lrAF~~~~gqgV~~~~GvWH~~~~~l~~~~~f~vv~~~ 146 (165)
T PF04115_consen 73 MLERHPL-TSQAFIPLDGSPWYLVVVAPDDDGPDPETLRAFLAPGGQGVNYHRGVWHHPLLPLDEPADFLVVDRI 146 (165)
T ss_dssp EEEE-TT-B-EEEEESBS---EEEEEEESSSS-ECCCEEEEEE-SS-EEEE-TT-EE-S-EESSSEEEEEEEEEE
T ss_pred eeccCCC-eeEEEEECCCCccEEEEEcCCCCCCCccceEEEEEcCCEEEEECCCceeCCccccCCcceEEEEeCC
Confidence 4456777 889999999998 8888888652 23344788999999999999997 444567777777543
No 216
>KOG3416 consensus Predicted nucleic acid binding protein [General function prediction only]
Probab=48.42 E-value=88 Score=25.97 Aligned_cols=84 Identities=27% Similarity=0.317 Sum_probs=55.2
Q ss_pred CCcccCceEEEEEEecCCCcccCeeeCCCEEEEEEe----CeEEEEEEcCCCceEEEEEcCCCEEEeCCCcEEEEEecCC
Q 018395 30 PMLRQGNIGAAKLALEKNGFALPHYCDSARVAYVLQ----GSGVAGIVLPEKEEKVVAIKKGDGIALPFGVVTWWYNKED 105 (356)
Q Consensus 30 p~l~~~~~~~~~~~l~Pg~~~~pH~h~a~e~~yVl~----G~~~~~vv~~~~~~~~~~l~~GDv~~iP~G~~H~~~N~g~ 105 (356)
|.++ ++.+..+.|++|....-- +..|+..++- |...+++-++.| ..+++||++.+-.|+...+++
T Consensus 12 P~~k--N~~v~fIvl~~g~~tkTk--dg~~v~~~kVaD~TgsI~isvW~e~~----~~~~PGDIirLt~Gy~Si~qg--- 80 (134)
T KOG3416|consen 12 PGLK--NINVTFIVLEYGRATKTK--DGHEVRSCKVADETGSINISVWDEEG----CLIQPGDIIRLTGGYASIFQG--- 80 (134)
T ss_pred hhhh--cceEEEEEEeeceeeecc--CCCEEEEEEEecccceEEEEEecCcC----cccCCccEEEecccchhhhcC---
Confidence 5554 567788888887644322 5667666553 556667665444 578999999999999998886
Q ss_pred CcEEEEEEeeCCCCCCCCcee
Q 018395 106 TELVVLFLGDTSKGHKAGEFT 126 (356)
Q Consensus 106 e~l~~l~i~~~~~~~~pg~~~ 126 (356)
...|.+......+.-|+|.
T Consensus 81 --~LtL~~GK~Ge~~KiGef~ 99 (134)
T KOG3416|consen 81 --CLTLYVGKGGEVQKIGEFC 99 (134)
T ss_pred --ceEEEecCCceEeEeeeeE
Confidence 2344455555444445554
No 217
>PRK00364 groES co-chaperonin GroES; Reviewed
Probab=47.24 E-value=83 Score=24.61 Aligned_cols=57 Identities=21% Similarity=0.292 Sum_probs=32.6
Q ss_pred cCCCeecccccccCCeeEEEEE-eceEEEEEEccCCceEEEEEecCCcEEEEcCCcEEEEeeC
Q 018395 231 DGKAMCSPGFSCDSALQVTYIV-RGSGRAQIVGPDGKRVLETTVKAGNLFIVPRFYVVSKIAD 292 (356)
Q Consensus 231 ~~g~~~~PH~h~~~A~ei~~v~-~G~~~~~iv~~~g~~~~~~~l~~Gdv~vvP~g~~h~~~~~ 292 (356)
+.||+..|--... ......|+ =|.++. +.+|+. ..-.+++||.+++|+...--+..+
T Consensus 21 T~gGI~Lp~~a~~-k~~~G~VvaVG~G~~---~~~G~~-~~~~vk~GD~Vlf~~~~g~ev~~~ 78 (95)
T PRK00364 21 TAGGIVLPDSAKE-KPQEGEVVAVGPGRR---LDNGER-VPLDVKVGDKVLFGKYAGTEVKID 78 (95)
T ss_pred ccceEEcCccccC-CcceEEEEEECCCeE---CCCCCE-eecccCCCCEEEEcCCCCeEEEEC
Confidence 4466666654322 23334333 366533 234533 345799999999998766554443
No 218
>PF04074 DUF386: Domain of unknown function (DUF386); InterPro: IPR004375 This family consists of conserved hypothetical proteins, about 150 amino acids in length, with no known function. The family is restricted to the bacteria. It includes three members in Escherichia coli (strain K12) and three in Streptococcus pneumoniae.; PDB: 1S4C_B 1JOP_B.
Probab=46.59 E-value=1.8e+02 Score=24.56 Aligned_cols=51 Identities=20% Similarity=0.076 Sum_probs=30.3
Q ss_pred cCeee-CCCEEEEEEeCeEEEEEE-cCCC--------------------ceEEEEEcCCCEEEeCCCcEEEEE
Q 018395 51 LPHYC-DSARVAYVLQGSGVAGIV-LPEK--------------------EEKVVAIKKGDGIALPFGVVTWWY 101 (356)
Q Consensus 51 ~pH~h-~a~e~~yVl~G~~~~~vv-~~~~--------------------~~~~~~l~~GDv~~iP~G~~H~~~ 101 (356)
.+=.| +--.+.|+++|+=++++. ...+ ......|++|+.+++-++-+|.-.
T Consensus 62 ~~E~HrkyiDiq~~l~G~E~i~~~~~~~~~~~~~~yd~~~D~~f~~~~~~~~~i~l~~g~f~iffP~d~H~p~ 134 (153)
T PF04074_consen 62 RFESHRKYIDIQYVLEGEERIGWSADIEDLEVVQPYDEEKDIAFYEDGKNESFITLKPGDFAIFFPEDAHRPG 134 (153)
T ss_dssp -EEE-SSEEEEEEEEES-EEEEEE-S---GGGS---BTTTTBEEES--TTEEEEEE-TTEEEEE-TT--EEEE
T ss_pred ceeeeccEEEEEeeccccEEEEEEcCcccCcccccCCCCCCEEEecCCCCceEEEEcCCEEEEECCCcccccc
Confidence 34457 777899999999999983 3221 122457888888888888888743
No 219
>COG2731 EbgC Beta-galactosidase, beta subunit [Carbohydrate transport and metabolism]
Probab=46.55 E-value=76 Score=27.30 Aligned_cols=67 Identities=13% Similarity=-0.051 Sum_probs=43.4
Q ss_pred ceEEEEEEe--cCCCcccCeee-CCCEEEEEEeCeEEEEEEcCCC--------------------ceEEEEEcCCCEEEe
Q 018395 36 NIGAAKLAL--EKNGFALPHYC-DSARVAYVLQGSGVAGIVLPEK--------------------EEKVVAIKKGDGIAL 92 (356)
Q Consensus 36 ~~~~~~~~l--~Pg~~~~pH~h-~a~e~~yVl~G~~~~~vv~~~~--------------------~~~~~~l~~GDv~~i 92 (356)
++.+...+. .+.....+-+| .--.+.|+++|+=.+++..... .+...+|.+|+..+|
T Consensus 45 ~if~~v~~~~t~~~~~~~~E~HrkYiDiqill~G~E~i~~s~~~~~~~~e~y~~e~Di~~~~~~~~e~~v~L~~G~faiF 124 (154)
T COG2731 45 NIFYNVMEDETQEAEEKKFELHRKYIDIQILLKGQEGIEYSPKETAQVKEDYDEEKDIIFYKGIEDESTVELNPGMFAIF 124 (154)
T ss_pred cEEEEEEeccccchhhcchhhhhheEEEEEEEeceeeeEEccCcCCccccccccccCEEeecCCccceEEEeCCCCEEEE
Confidence 444444433 44555667788 8889999999998888766442 123456666666666
Q ss_pred CCCcEEEEEe
Q 018395 93 PFGVVTWWYN 102 (356)
Q Consensus 93 P~G~~H~~~N 102 (356)
-+|-+|.-..
T Consensus 125 fP~e~H~P~c 134 (154)
T COG2731 125 FPGEPHRPGC 134 (154)
T ss_pred CCCCcccccc
Confidence 6666665544
No 220
>PLN02868 acyl-CoA thioesterase family protein
Probab=45.22 E-value=43 Score=33.39 Aligned_cols=53 Identities=11% Similarity=-0.032 Sum_probs=38.4
Q ss_pred EEEEecCCCeecccccccCCeeEEEEEeceEEEEEEccCCceEEEEEecCCcEEEE
Q 018395 226 DLVRLDGKAMCSPGFSCDSALQVTYIVRGSGRAQIVGPDGKRVLETTVKAGNLFIV 281 (356)
Q Consensus 226 ~~v~l~~g~~~~PH~h~~~A~ei~~v~~G~~~~~iv~~~g~~~~~~~l~~Gdv~vv 281 (356)
....+.+|.+.-- -.-. +..+.+|++|++++...+++|+ ..-..+++||+|=.
T Consensus 32 ~~~~~~~Ge~I~~-~Gd~-~~~lyiI~~G~V~v~~~~~~ge-~~l~~l~~Gd~fG~ 84 (413)
T PLN02868 32 VPKRYGKGEYVVR-EGEP-GDGLYFIWKGEAEVSGPAEEES-RPEFLLKRYDYFGY 84 (413)
T ss_pred eEEEECCCCEEEe-CCCc-CceEEEEEeCEEEEEEECCCCc-EEEEEeCCCCEeeh
Confidence 4456677766631 1123 6689999999999999998884 44568899998874
No 221
>COG3123 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=41.63 E-value=1.2e+02 Score=23.38 Aligned_cols=43 Identities=9% Similarity=0.001 Sum_probs=33.7
Q ss_pred CCCEEEEEEeCeEEEEEEcCCCceEEEEEcCCCEEEeCCCcEEEEE
Q 018395 56 DSARVAYVLQGSGVAGIVLPEKEEKVVAIKKGDGIALPFGVVTWWY 101 (356)
Q Consensus 56 ~a~e~~yVl~G~~~~~vv~~~~~~~~~~l~~GDv~~iP~G~~H~~~ 101 (356)
.+.|..-|+.|.+.+.+. +..+. ....+|.+|.+|...-.-++
T Consensus 40 a~~E~Mtvv~Gal~v~lp--gs~dW-q~~~~Ge~F~VpgnS~F~lq 82 (94)
T COG3123 40 AAPEEMTVVSGALTVLLP--GSDDW-QVYTAGEVFNVPGNSEFDLQ 82 (94)
T ss_pred CCceEEEEEeeEEEEEcC--CCccc-EEecCCceEEcCCCCeEEEE
Confidence 688999999999988653 33233 68899999999998876554
No 222
>PF03971 IDH: Monomeric isocitrate dehydrogenase; InterPro: IPR004436 This family of enzymes catalyses the NADP(+)-dependent oxidative decarboxylation of isocitrate to form 2-oxoglutarate, CO2, and NADPH within the Krebs cycle (1.1.1.42 from EC). Thus this enzyme supplies the cell with a key intermediate in energy metabolism, and precursors for biosynthetic pathways. The activity of this enzyme, which is controlled by phosphorylation, helps regulate carbon flux between the Krebs cycle and the glyoxylate bypass, which is an alternate route that accumulates carbon for biosynthesis when acetate is the sole carbon source for growth []. The phosphorylation state of this enzyme is controlled by isocitrate dehydrogenase kinase/phosphatase. This family has been found in a number of bacterial species including Azotobacter vinelandii, Corynebacterium glutamicum, Rhodomicrobium vannielii, and Neisseria meningitidis. The structure of isocitrate dehydrogenase from Azotobacter vinelandii (P16100 from SWISSPROT) has been determined []. This molecule consists of two distinct domains, a small domain and a large domain, with a folding topology similar to that of dimeric isocitrate dehydrogenase from Escherichia coli (P08200 from SWISSPROT). The structure of the large domain repeats a motif observed in the dimeric enzyme. Such a fusional structure by domain duplication enables a single polypeptide chain to form a structure at the catalytic site that is homologous to the dimeric enzyme, the catalytic site of which is located at the interface of two identical subunits.; GO: 0004450 isocitrate dehydrogenase (NADP+) activity, 0006099 tricarboxylic acid cycle, 0055114 oxidation-reduction process; PDB: 1ITW_D 1J1W_A 3MBC_A 2B0T_A.
Probab=41.12 E-value=39 Score=35.19 Aligned_cols=35 Identities=23% Similarity=0.505 Sum_probs=27.2
Q ss_pred EEEEEeceEEEEEEccCCceEEEEEecCCcEEEEc
Q 018395 248 VTYIVRGSGRAQIVGPDGKRVLETTVKAGNLFIVP 282 (356)
Q Consensus 248 i~~v~~G~~~~~iv~~~g~~~~~~~l~~Gdv~vvP 282 (356)
=.|.+.+.|.++|++.+|+.++...|++||+|-.-
T Consensus 421 KTFe~~~~G~v~vvd~~G~vl~eh~Ve~GDIwRmc 455 (735)
T PF03971_consen 421 KTFEIPADGTVRVVDESGEVLMEHEVEAGDIWRMC 455 (735)
T ss_dssp GEEE-SSSEEEEEEETTS-EEEEEEE-TT-EEEEE
T ss_pred cceECCCCcEEEEEeCCCCEEEEeeecCCcchhhh
Confidence 35778999999999999999999999999998653
No 223
>PF01959 DHQS: 3-dehydroquinate synthase (EC 4.6.1.3); InterPro: IPR002812 3-Dehydroquinate synthase (4.2.3.4 from EC) is an enzyme in the common pathway of aromatic amino acid biosynthesis that catalyses the conversion of 3-deoxy-D-arabino-heptulosonic acid 7-phosphate (DAHP) into 3-dehydroquinic acid []. This synthesis of aromatic amino acids is an essential metabolic function for most prokaryotic as well as lower eukaryotic cells, including plants. The pathway is absent in humans; therefore, DHQS represents a potential target for the development of novel and selective antimicrobial agents. Owing to the threat posed by the spread of pathogenic bacteria resistant to many currently used antimicrobial drugs, there is clearly a need to develop new anti-infective drugs acting at novel targets. A further potential use for DHQS inhibitors is as herbicides [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process
Probab=41.12 E-value=1.7e+02 Score=28.67 Aligned_cols=57 Identities=23% Similarity=0.356 Sum_probs=47.6
Q ss_pred CceEEEEEEecCCCcccCeee-CCCEEEEEEeCeEEEEEEcCCCce-EEEEEcCCCEEE
Q 018395 35 GNIGAAKLALEKNGFALPHYC-DSARVAYVLQGSGVAGIVLPEKEE-KVVAIKKGDGIA 91 (356)
Q Consensus 35 ~~~~~~~~~l~Pg~~~~pH~h-~a~e~~yVl~G~~~~~vv~~~~~~-~~~~l~~GDv~~ 91 (356)
.-..+++++++..-++.-.-. +...+..++|..=++.++.|+|+. .+.+|++||-+.
T Consensus 275 R~~~VGRvKIE~RPLllIeA~~~g~~~svilQnaetIRlv~p~G~~vsVt~Lk~GD~vL 333 (354)
T PF01959_consen 275 RTAIVGRVKIERRPLLLIEAEADGKRISVILQNAETIRLVGPDGEPVSVTELKPGDEVL 333 (354)
T ss_pred EEEEeeEEEEeecceEEEEEEeCCeEEEEEEecCcEEEEECCCCCEeeeeecCCCCEEE
Confidence 456688999998888877766 889999999999999999998863 468999999774
No 224
>PF00166 Cpn10: Chaperonin 10 Kd subunit; InterPro: IPR020818 The chaperonins are `helper' molecules required for correct folding and subsequent assembly of some proteins []. These are required for normal cell growth [], and are stress-induced, acting to stabilise or protect disassembled polypeptides under heat-shock conditions. Type I chaperonins present in eubacteria, mitochondria and chloroplasts require the concerted action of 2 proteins, chaperonin 60 (cpn60) and chaperonin 10 (cpn10) []. The 10 kDa chaperonin (cpn10 - or groES in bacteria) exists as a ring-shaped oligomer of between six to eight identical subunits, while the 60 kDa chaperonin (cpn60 - or groEL in bacteria) forms a structure comprising 2 stacked rings, each ring containing 7 identical subunits []. These ring structures assemble by self-stimulation in the presence of Mg2+-ATP. The central cavity of the cylindrical cpn60 tetradecamer provides as isolated environment for protein folding whilst cpn-10 binds to cpn-60 and synchronizes the release of the folded protein in an Mg2+-ATP dependent manner []. The binding of cpn10 to cpn60 inhibits the weak ATPase activity of cpn60. Escherichia coli GroES has also been shown to bind ATP cooperatively, and with an affinity comparable to that of GroEL []. Each GroEL subunit contains three structurally distinct domains: an apical, an intermediate and an equatorial domain. The apical domain contains the binding sites for both GroES and the unfolded protein substrate. The equatorial domain contains the ATP-binding site and most of the oligomeric contacts. The intermediate domain links the apical and equatorial domains and transfers allosteric information between them. The GroEL oligomer is a tetradecamer, cylindrically shaped, that is organised in two heptameric rings stacked back to back. Each GroEL ring contains a central cavity, known as the `Anfinsen cage', that provides an isolated environment for protein folding. The identical 10 kDa subunits of GroES form a dome-like heptameric oligomer in solution. ATP binding to GroES may be important in charging the seven subunits of the interacting GroEL ring with ATP, to facilitate cooperative ATP binding and hydrolysis for substrate protein release.; GO: 0006457 protein folding, 0005737 cytoplasm; PDB: 1PF9_Q 1AON_P 1SX4_T 1SVT_R 2C7D_P 1PCQ_O 2C7C_Q 1GRU_Q 1WNR_F 1P3H_I ....
Probab=39.49 E-value=44 Score=25.97 Aligned_cols=54 Identities=24% Similarity=0.276 Sum_probs=31.3
Q ss_pred CCcccCeee-CCCEEEEEEe-CeEEEEEEcCCCceEEEEEcCCCEEEeCCCcEEEEEec
Q 018395 47 NGFALPHYC-DSARVAYVLQ-GSGVAGIVLPEKEEKVVAIKKGDGIALPFGVVTWWYNK 103 (356)
Q Consensus 47 g~~~~pH~h-~a~e~~yVl~-G~~~~~vv~~~~~~~~~~l~~GDv~~iP~G~~H~~~N~ 103 (356)
+++..|--. .......|++ |.|... ..+......++.||.+++|....-.+..+
T Consensus 22 ~GiiLp~~~~~~~~~G~VvaVG~G~~~---~~g~~~~~~vk~GD~Vl~~~~~g~~v~~~ 77 (93)
T PF00166_consen 22 SGIILPESAKEKPNQGKVVAVGPGRYN---ENGEEVPMDVKVGDKVLFPKYAGTEVKFD 77 (93)
T ss_dssp TSCCE-CCSSSSEEEEEEEEE-SEEET---TTSSEEETSS-TTSEEEEETTTSEEEEET
T ss_pred ceEEeccccccccceeEEEEcCCcccc---CCCcEeeeeeeeccEEeccccCceEEEEC
Confidence 455566333 2334455554 777664 34443446899999999999986655553
No 225
>KOG2131 consensus Uncharacterized conserved protein, contains JmjC domain [Chromatin structure and dynamics; Signal transduction mechanisms]
Probab=39.20 E-value=24 Score=34.49 Aligned_cols=67 Identities=18% Similarity=0.075 Sum_probs=48.7
Q ss_pred EEEEecC-CCcccCeee--CCCEEEEEEeCeEEEEEEcCCCc-------------------------eEEEEEcCCCEEE
Q 018395 40 AKLALEK-NGFALPHYC--DSARVAYVLQGSGVAGIVLPEKE-------------------------EKVVAIKKGDGIA 91 (356)
Q Consensus 40 ~~~~l~P-g~~~~pH~h--~a~e~~yVl~G~~~~~vv~~~~~-------------------------~~~~~l~~GDv~~ 91 (356)
..+-+.| |+-.+.|-- .+..+...+=|+=+--++.|+.. -.+..-++|++++
T Consensus 200 rFvy~Gp~gSwtp~HaDVf~s~swS~nicG~KrWl~~pP~qe~~l~dr~gnlp~~~~~~~ld~~~~~~lei~Qepge~VF 279 (427)
T KOG2131|consen 200 RFVYAGPAGSWTPFHADVFHSPSWSVNICGRKRWLLYPPEQEQTLADRYGNLPLPSWITKLDLFRGPLLEIFQEPGETVF 279 (427)
T ss_pred eEEEeccCCCCCccchhhhcCCcceeeeecceeEEEeChHHhhhhhhhccCcCCccccccccccccchhhhhccCCceee
Confidence 3455664 455566622 56778888889988888877641 1123457999999
Q ss_pred eCCCcEEEEEecCCC
Q 018395 92 LPFGVVTWWYNKEDT 106 (356)
Q Consensus 92 iP~G~~H~~~N~g~e 106 (356)
+|.|+-|.+.|.+|+
T Consensus 280 vPsGW~hQV~NL~dT 294 (427)
T KOG2131|consen 280 VPSGWHHQVLNLGDT 294 (427)
T ss_pred ccCccccccccccce
Confidence 999999999999987
No 226
>PF13640 2OG-FeII_Oxy_3: 2OG-Fe(II) oxygenase superfamily; PDB: 3DKQ_B 3GZE_D 3HQR_A 2Y34_A 2G1M_A 2G19_A 3OUI_A 3OUJ_A 2HBU_A 2Y33_A ....
Probab=38.57 E-value=71 Score=24.40 Aligned_cols=62 Identities=19% Similarity=0.187 Sum_probs=37.1
Q ss_pred EEEecCCCcccCeeeC---CCE----EEEEEe-Ce-----EEEEEEcC---CCceEEEE-----EcCCCEEEeCC-CcEE
Q 018395 41 KLALEKNGFALPHYCD---SAR----VAYVLQ-GS-----GVAGIVLP---EKEEKVVA-----IKKGDGIALPF-GVVT 98 (356)
Q Consensus 41 ~~~l~Pg~~~~pH~h~---a~e----~~yVl~-G~-----~~~~vv~~---~~~~~~~~-----l~~GDv~~iP~-G~~H 98 (356)
.....+|+...||+.. ... ++| |+ -. |.+.+... ........ .++|++++++. ...|
T Consensus 3 ~~~y~~G~~~~~H~D~~~~~~~~~t~lly-L~~~~~~~~GG~l~~~~~~~~~~~~~~~~~~~~~p~~g~~v~F~~~~~~H 81 (100)
T PF13640_consen 3 LNRYPPGGFFGPHTDNSYDPHRRVTLLLY-LNDPEWEFEGGELEFYPSKDSDDVSREVEDFDIVPKPGRLVIFPSDNSLH 81 (100)
T ss_dssp EEEEETTEEEEEEESSSCCCSEEEEEEEE-SS-CS-HCEE--EEETTTS-TSSTCEEEGGGSEE-BTTEEEEEESCTCEE
T ss_pred EEEECcCCEEeeeECCCCCCcceEEEEEE-ECCCCcccCCCEEEEeccccCCCcceEEEeccccCCCCEEEEEeCCCCee
Confidence 4556888889999853 222 223 33 32 55555542 22223334 88999999999 8999
Q ss_pred EEEec
Q 018395 99 WWYNK 103 (356)
Q Consensus 99 ~~~N~ 103 (356)
...-.
T Consensus 82 ~v~~v 86 (100)
T PF13640_consen 82 GVTPV 86 (100)
T ss_dssp EEEEE
T ss_pred cCccc
Confidence 88654
No 227
>PRK00364 groES co-chaperonin GroES; Reviewed
Probab=37.47 E-value=1.3e+02 Score=23.45 Aligned_cols=41 Identities=20% Similarity=0.052 Sum_probs=24.8
Q ss_pred EEEEEE-eCeEEEEEEcCCCceEEEEEcCCCEEEeCCCcEEEEEe
Q 018395 59 RVAYVL-QGSGVAGIVLPEKEEKVVAIKKGDGIALPFGVVTWWYN 102 (356)
Q Consensus 59 e~~yVl-~G~~~~~vv~~~~~~~~~~l~~GDv~~iP~G~~H~~~N 102 (356)
....|+ =|.+... .+|......++.||.++++....-.+..
T Consensus 36 ~~G~VvaVG~G~~~---~~G~~~~~~vk~GD~Vlf~~~~g~ev~~ 77 (95)
T PRK00364 36 QEGEVVAVGPGRRL---DNGERVPLDVKVGDKVLFGKYAGTEVKI 77 (95)
T ss_pred ceEEEEEECCCeEC---CCCCEeecccCCCCEEEEcCCCCeEEEE
Confidence 344444 3666442 2344445689999999999766554443
No 228
>PF13640 2OG-FeII_Oxy_3: 2OG-Fe(II) oxygenase superfamily; PDB: 3DKQ_B 3GZE_D 3HQR_A 2Y34_A 2G1M_A 2G19_A 3OUI_A 3OUJ_A 2HBU_A 2Y33_A ....
Probab=37.39 E-value=1.4e+02 Score=22.62 Aligned_cols=62 Identities=18% Similarity=0.182 Sum_probs=37.6
Q ss_pred EEecCCCeecccccc---cCCeeEEEE--Ee-ce-----EEEEEEccC--CceEEEEE-----ecCCcEEEEcC-CcEEE
Q 018395 228 VRLDGKAMCSPGFSC---DSALQVTYI--VR-GS-----GRAQIVGPD--GKRVLETT-----VKAGNLFIVPR-FYVVS 288 (356)
Q Consensus 228 v~l~~g~~~~PH~h~---~~A~ei~~v--~~-G~-----~~~~iv~~~--g~~~~~~~-----l~~Gdv~vvP~-g~~h~ 288 (356)
.+..+|+...||+.. . ...+.++ ++ -. |...+..+. ........ .++|++++||. ..+|.
T Consensus 4 ~~y~~G~~~~~H~D~~~~~-~~~~t~llyL~~~~~~~~GG~l~~~~~~~~~~~~~~~~~~~~~p~~g~~v~F~~~~~~H~ 82 (100)
T PF13640_consen 4 NRYPPGGFFGPHTDNSYDP-HRRVTLLLYLNDPEWEFEGGELEFYPSKDSDDVSREVEDFDIVPKPGRLVIFPSDNSLHG 82 (100)
T ss_dssp EEEETTEEEEEEESSSCCC-SEEEEEEEESS-CS-HCEE--EEETTTS-TSSTCEEEGGGSEE-BTTEEEEEESCTCEEE
T ss_pred EEECcCCEEeeeECCCCCC-cceEEEEEEECCCCcccCCCEEEEeccccCCCcceEEEeccccCCCCEEEEEeCCCCeec
Confidence 355889999999965 2 3333333 44 33 677777642 11111122 78999999999 99999
Q ss_pred Ee
Q 018395 289 KI 290 (356)
Q Consensus 289 ~~ 290 (356)
..
T Consensus 83 v~ 84 (100)
T PF13640_consen 83 VT 84 (100)
T ss_dssp EE
T ss_pred Cc
Confidence 84
No 229
>TIGR00022 uncharacterized protein, YhcH/YjgK/YiaL family. This family consists of conserved hypothetical proteins, about 150 amino acids in length. Members with limited information include YhcH, a possible sugar isomerase of sialic acid catabolism, and YjgK.
Probab=36.18 E-value=1.4e+02 Score=24.89 Aligned_cols=45 Identities=7% Similarity=-0.062 Sum_probs=28.4
Q ss_pred cccCeee-CCCEEEEEEeCeEEEEEEcCC-Cce-EEEEEcCCCEEEeC
Q 018395 49 FALPHYC-DSARVAYVLQGSGVAGIVLPE-KEE-KVVAIKKGDGIALP 93 (356)
Q Consensus 49 ~~~pH~h-~a~e~~yVl~G~~~~~vv~~~-~~~-~~~~l~~GDv~~iP 93 (356)
-..+=.| +---+.|+++|+=++++.... +.. ..---..-|+.+..
T Consensus 60 ~~~~E~Hr~YiDIq~~l~G~E~i~~~~~~~~~~~~~~y~~~~D~~f~~ 107 (142)
T TIGR00022 60 SKKAELHHRYLDIQLLLRGEENIEVGTTPPNLSVYEDYLEEDDIQLCA 107 (142)
T ss_pred hcchhhhhheEEEEEeecceEEEEEecCccccccccCCCcCCCEEecc
Confidence 3445567 777899999999999985432 211 11123566777774
No 230
>PRK02290 3-dehydroquinate synthase; Provisional
Probab=36.14 E-value=1.4e+02 Score=29.05 Aligned_cols=57 Identities=18% Similarity=0.295 Sum_probs=49.5
Q ss_pred ceeEEEEecCCCeecccccccCCeeEEEEEeceEEEEEEccCCceEEEEEecCCcEEE
Q 018395 223 CGADLVRLDGKAMCSPGFSCDSALQVTYIVRGSGRAQIVGPDGKRVLETTVKAGNLFI 280 (356)
Q Consensus 223 ~s~~~v~l~~g~~~~PH~h~~~A~ei~~v~~G~~~~~iv~~~g~~~~~~~l~~Gdv~v 280 (356)
..+.|++++..-|+.-+-..+ ...+..+++.-=.+.++.|+|+.+=-++|++||-+.
T Consensus 267 ~~VGRvKIE~RPL~lIeAe~~-g~~~~viLQnaetIrlv~~dG~~vsVt~Lk~GD~VL 323 (344)
T PRK02290 267 AIVGRVKIEKRPLLLIEAEYG-GKRIRTILQNAETIRLVTPDGKPVSVVDLKPGDEVL 323 (344)
T ss_pred EEeeEEEEeeccEEEEEEEeC-CeEEEEEEecCcEEEEECCCCCEeeeeecCCCCEEE
Confidence 568899999999998888877 889999999999999999999765456999999774
No 231
>KOG2130 consensus Phosphatidylserine-specific receptor PtdSerR, contains JmjC domain [Chromatin structure and dynamics; Signal transduction mechanisms]
Probab=36.05 E-value=39 Score=32.53 Aligned_cols=26 Identities=27% Similarity=0.202 Sum_probs=22.9
Q ss_pred EEEEcCCCEEEeCCCcEEEEEecCCC
Q 018395 81 VVAIKKGDGIALPFGVVTWWYNKEDT 106 (356)
Q Consensus 81 ~~~l~~GDv~~iP~G~~H~~~N~g~e 106 (356)
....++|.++++|.|+.|.+.|...+
T Consensus 264 Ec~q~pGEt~fVP~GWWHvVlNle~T 289 (407)
T KOG2130|consen 264 ECLQKPGETMFVPSGWWHVVLNLEPT 289 (407)
T ss_pred eeeecCCceEEecCCeEEEEeccCce
Confidence 46789999999999999999997654
No 232
>cd00320 cpn10 Chaperonin 10 Kd subunit (cpn10 or GroES); Cpn10 cooperates with chaperonin 60 (cpn60 or GroEL), an ATPase, to assist the folding and assembly of proteins and is found in eubacterial cytosol, as well as in the matrix of mitochondria and chloroplasts. It forms heptameric rings with a dome-like structure, forming a lid to the large cavity of the tetradecameric cpn60 cylinder and thereby tightly regulating release and binding of proteins to the cpn60 surface.
Probab=35.40 E-value=1.3e+02 Score=23.45 Aligned_cols=26 Identities=23% Similarity=0.113 Sum_probs=18.4
Q ss_pred CceEEEEEcCCCEEEeCCCcEEEEEe
Q 018395 77 KEEKVVAIKKGDGIALPFGVVTWWYN 102 (356)
Q Consensus 77 ~~~~~~~l~~GDv~~iP~G~~H~~~N 102 (356)
+......++.||.+++|....-.+..
T Consensus 51 g~~~~~~vk~GD~Vl~~~~~g~~v~~ 76 (93)
T cd00320 51 GERVPLSVKVGDKVLFPKYAGTEVKL 76 (93)
T ss_pred CCCccccccCCCEEEECCCCceEEEE
Confidence 33344689999999999876554443
No 233
>PF14801 GCD14_N: tRNA methyltransferase complex GCD14 subunit N-term; PDB: 1I9G_A.
Probab=34.60 E-value=94 Score=21.79 Aligned_cols=32 Identities=25% Similarity=0.421 Sum_probs=23.1
Q ss_pred EEEEEccCCceEEEEEecCCcEEEEcCCcEEEE
Q 018395 257 RAQIVGPDGKRVLETTVKAGNLFIVPRFYVVSK 289 (356)
Q Consensus 257 ~~~iv~~~g~~~~~~~l~~Gdv~vvP~g~~h~~ 289 (356)
+||+.|+.|++ ++-.|.+|..|--=+|.+..-
T Consensus 11 rVQlTD~Kgr~-~Ti~L~~G~~fhThrG~i~HD 42 (54)
T PF14801_consen 11 RVQLTDPKGRK-HTITLEPGGEFHTHRGAIRHD 42 (54)
T ss_dssp EEEEEETT--E-EEEE--TT-EEEETTEEEEHH
T ss_pred EEEEccCCCCe-eeEEECCCCeEEcCccccchh
Confidence 79999999754 677999999999999988764
No 234
>PF04622 ERG2_Sigma1R: ERG2 and Sigma1 receptor like protein; InterPro: IPR006716 This family consists of the fungal C-8 sterol isomerase and mammalian sigma1 receptor. C-8 sterol isomerase (delta-8--delta-7 sterol isomerase), catalyses a reaction in ergosterol biosynthesis, which results in unsaturation at C-7 in the B ring of sterols []. Sigma 1 receptor is a low molecular mass mammalian protein located in the endoplasmic reticulum [], which interacts with endogenous steroid hormones, such as progesterone and testosterone []. It also binds the sigma ligands, which are a set of chemically unrelated drugs including haloperidol, pentazocine, and ditolylguanidine []. Sigma1 effectors are not well understood, but sigma1 agonists have been observed to affect NMDA receptor function, the alpha-adrenergic system and opioid analgesia.; GO: 0000247 C-8 sterol isomerase activity, 0006696 ergosterol biosynthetic process, 0005783 endoplasmic reticulum
Probab=33.79 E-value=1.2e+02 Score=27.74 Aligned_cols=100 Identities=19% Similarity=0.214 Sum_probs=60.5
Q ss_pred CcccCeeeCCCEEEEEEeCeEEEEEEcCCCceEEEEEcCCCEEEeCCCcEEEEEecCCCcEEEEEEeeCCCCCCCCceeE
Q 018395 48 GFALPHYCDSARVAYVLQGSGVAGIVLPEKEEKVVAIKKGDGIALPFGVVTWWYNKEDTELVVLFLGDTSKGHKAGEFTN 127 (356)
Q Consensus 48 ~~~~pH~h~a~e~~yVl~G~~~~~vv~~~~~~~~~~l~~GDv~~iP~G~~H~~~N~g~e~l~~l~i~~~~~~~~pg~~~~ 127 (356)
+....|| ++..++||+|+.... .++. ......++||..+.|.|......=..+ .-.++-... --|-.. .
T Consensus 112 GhsGrh~--ad~y~tIL~G~~~~~--~~g~-~~~evy~pGd~~~l~rg~a~~y~m~~~--tw~LEY~RG---~IP~~l-p 180 (216)
T PF04622_consen 112 GHSGRHW--ADDYFTILSGEQWAW--SPGS-LEPEVYKPGDSHHLPRGEAKQYQMPPG--TWALEYGRG---WIPSML-P 180 (216)
T ss_pred CCCcceE--eeeEEEEEEEEEEEE--cCCC-CCceEeccCCEEEecCceEEEEEeCCC--eEEEEecCC---chhhhh-H
Confidence 3455565 788899999998663 3443 334678999999999998876654433 333332221 122111 2
Q ss_pred EeecccccccccCcHHHHHhhccCCHHH-HHHhh
Q 018395 128 FFLTGANGIFTGFSTEFVSRAWDLDENT-VKTLV 160 (356)
Q Consensus 128 f~lag~~s~l~~~~~~vl~~af~~~~~~-~~~l~ 160 (356)
|-++ +.+++.+|-..+-.+..+...+ +++|+
T Consensus 181 f~~~--dt~~sTlDf~t~~~T~~~~~~~m~~nll 212 (216)
T PF04622_consen 181 FGFA--DTLFSTLDFPTLYRTVYITAREMIKNLL 212 (216)
T ss_pred HHHH--HHHHhccchHHHHHHHHHHHHHHHHHHH
Confidence 2222 4667778887777777766543 44443
No 235
>KOG1356 consensus Putative transcription factor 5qNCA, contains JmjC domain [Transcription]
Probab=33.68 E-value=15 Score=39.65 Aligned_cols=56 Identities=16% Similarity=0.009 Sum_probs=33.6
Q ss_pred EecCCCcccCeee-CCCEEEEEEeCe-----EEEEEEcCCCceEEEEEcCCCEEEeCCCcEEEEEec
Q 018395 43 ALEKNGFALPHYC-DSARVAYVLQGS-----GVAGIVLPEKEEKVVAIKKGDGIALPFGVVTWWYNK 103 (356)
Q Consensus 43 ~l~Pg~~~~pH~h-~a~e~~yVl~G~-----~~~~vv~~~~~~~~~~l~~GDv~~iP~G~~H~~~N~ 103 (356)
..+-|.-..+-+| -.+.=+|+.++- -..+| .--+..=..||.++||+|.+|.+.|.
T Consensus 761 ~~E~~~~~~~v~hPIhDQS~YLd~~lr~RLkeEyGV-----e~WtfvQ~LGdAVfIPAGaPHQVrNL 822 (889)
T KOG1356|consen 761 CKEQGHEVPKVHHPIHDQSWYLDRYLRRRLKEEYGV-----EPWTFVQFLGDAVFIPAGAPHQVRNL 822 (889)
T ss_pred hHHhcCCCCcccCCCcccceeccHHHHHHHHHHhCC-----CccchhhcccceEEecCCCcHHhhhh
Confidence 3344444555555 555555554432 11111 11235557899999999999999995
No 236
>PRK10202 ebgC cryptic beta-D-galactosidase subunit beta; Reviewed
Probab=33.33 E-value=1.8e+02 Score=24.69 Aligned_cols=51 Identities=18% Similarity=0.102 Sum_probs=31.6
Q ss_pred cCeee-CCCEEEEEEeCeEEEEEEcCCC------------------ceEEEEEcCCCEEEeCCCcEEEEE
Q 018395 51 LPHYC-DSARVAYVLQGSGVAGIVLPEK------------------EEKVVAIKKGDGIALPFGVVTWWY 101 (356)
Q Consensus 51 ~pH~h-~a~e~~yVl~G~~~~~vv~~~~------------------~~~~~~l~~GDv~~iP~G~~H~~~ 101 (356)
.+-.| +--.+.|+++|+-.+++..... ......|++||.+++.++-+|.-.
T Consensus 58 ~~E~Hr~YiDIq~~l~G~E~i~~~~~~~~~~~~~y~~e~D~~f~~~~~~~v~l~~G~F~iffP~daH~P~ 127 (149)
T PRK10202 58 LFTGHRRYFEVHYYLQGQQKIEYAPKETLQVVEYYRDETDREYLKGCGETVEVHEGQIVICDIHEAYRFI 127 (149)
T ss_pred cccccccEEEEEEEEeCeEEEEEEEcccCccccccCcccCeeeccCCCcEEEeCCCeEEEECCcccccCC
Confidence 44556 7778999999999998854321 111345555666555555555543
No 237
>PHA00672 hypothetical protein
Probab=33.12 E-value=2.9e+02 Score=23.03 Aligned_cols=68 Identities=15% Similarity=0.135 Sum_probs=53.8
Q ss_pred CceEEEEEEecCCCcccCeeeCCCEEEEEEeCeEEEEEEcCCCceEEEEEcCCCEEEeCCCcEEEEEecCCCcE
Q 018395 35 GNIGAAKLALEKNGFALPHYCDSARVAYVLQGSGVAGIVLPEKEEKVVAIKKGDGIALPFGVVTWWYNKEDTEL 108 (356)
Q Consensus 35 ~~~~~~~~~l~Pg~~~~pH~h~a~e~~yVl~G~~~~~vv~~~~~~~~~~l~~GDv~~iP~G~~H~~~N~g~e~l 108 (356)
.|+=+..++++.|.+..=-.|.-+.+ ++.+|...+.. ++ ...+|+.--++.-|+|.....+...|+.+
T Consensus 45 ~GvYARei~IPkGt~LtG~~hkf~~~-ii~sG~itV~t---dg--e~~rl~g~~~i~~~aG~KragyAHeDT~w 112 (152)
T PHA00672 45 AGVYARTIRIPAGVALTGALIKVSTV-LIFSGHATVFI---GG--EAVELRGYHVIPASAGRKQAFVAHADTDL 112 (152)
T ss_pred cceeEEEEeccCceeeeeeeeEeeEE-EEecccEEEEe---CC--cEEEEecceeeecCCCcccceeeeccceE
Confidence 56778889999999988778866666 99999998865 22 23689999999999998887777666643
No 238
>KOG2132 consensus Uncharacterized conserved protein, contains JmjC domain [Chromatin structure and dynamics; Signal transduction mechanisms]
Probab=32.74 E-value=21 Score=34.49 Aligned_cols=67 Identities=12% Similarity=0.113 Sum_probs=50.7
Q ss_pred ceeEEEEecCCCeecccccccCCeeEEEEEeceEEEEEEccCCc--------------------------------eEEE
Q 018395 223 CGADLVRLDGKAMCSPGFSCDSALQVTYIVRGSGRAQIVGPDGK--------------------------------RVLE 270 (356)
Q Consensus 223 ~s~~~v~l~~g~~~~PH~h~~~A~ei~~v~~G~~~~~iv~~~g~--------------------------------~~~~ 270 (356)
+.........|.+...|.-+. +-++.-+.|+.++.+..|.-. +.++
T Consensus 250 v~~~~w~GpaGtV~pih~dp~--hNi~~qv~G~k~i~l~~p~~s~~lyP~d~~~~~tsqvdvenPdlk~fp~~~k~~~l~ 327 (355)
T KOG2132|consen 250 VDINAWIGPAGTVLPIHMDPW--HNILSQVFGRKRIRLYPPEDSGALYPTDTYLLETSQVDVENPDLKAFPKFAKARFLD 327 (355)
T ss_pred cceeEEeccCCceeccccccc--cceeeeeecceEEEEecCcccCCCCCccchhhcccccccCCCChhhhhHHHHHHHHH
Confidence 344444555688988888765 678999999999999887520 2334
Q ss_pred EEecCCcEEEEcCCcEEEEee
Q 018395 271 TTVKAGNLFIVPRFYVVSKIA 291 (356)
Q Consensus 271 ~~l~~Gdv~vvP~g~~h~~~~ 291 (356)
..|++||+.++|+-++||...
T Consensus 328 ~lL~pGe~L~iP~kwwhyvrs 348 (355)
T KOG2132|consen 328 CLLEPGEALFIPPKWWHYVRS 348 (355)
T ss_pred HhcCCchhccccHHHhhhhhh
Confidence 578999999999999999854
No 239
>PF04115 Ureidogly_hydro: Ureidoglycolate hydrolase ; InterPro: IPR007247 Ureidoglycolate hydrolase (3.5.3.19 from EC) carries out the third step in the degradation of allantoin.; GO: 0004848 ureidoglycolate hydrolase activity, 0000256 allantoin catabolic process; PDB: 1YQC_B 1XSR_A 2BDR_B 1XSQ_A.
Probab=32.40 E-value=3e+02 Score=23.70 Aligned_cols=65 Identities=17% Similarity=0.132 Sum_probs=40.3
Q ss_pred cCeee-CCCEEEEEEeCeE-EEEEEcCCC------ceEEEEEcCCCEEEeCCCcEEEEEecCCCcEEEEEEee
Q 018395 51 LPHYC-DSARVAYVLQGSG-VAGIVLPEK------EEKVVAIKKGDGIALPFGVVTWWYNKEDTELVVLFLGD 115 (356)
Q Consensus 51 ~pH~h-~a~e~~yVl~G~~-~~~vv~~~~------~~~~~~l~~GDv~~iP~G~~H~~~N~g~e~l~~l~i~~ 115 (356)
..-.| ...|.++-+.|+. .+-+|.+.+ ..+.+.+..|+.+.+-+|+.|.-.=.=+++..|+++..
T Consensus 73 ~lERHp~tsQ~fiPl~~~~~~lvvVA~~~~~Pd~~~lrAF~~~~gqgV~~~~GvWH~~~~~l~~~~~f~vv~~ 145 (165)
T PF04115_consen 73 MLERHPLTSQAFIPLDGSPWYLVVVAPDDDGPDPETLRAFLAPGGQGVNYHRGVWHHPLLPLDEPADFLVVDR 145 (165)
T ss_dssp EEEE-TTB-EEEEESBS---EEEEEEESSSS-ECCCEEEEEE-SS-EEEE-TT-EE-S-EESSSEEEEEEEEE
T ss_pred eeccCCCeeEEEEECCCCccEEEEEcCCCCCCCccceEEEEEcCCEEEEECCCceeCCccccCCcceEEEEeC
Confidence 45578 8899999999988 666666543 34568899999999999999986543345677777643
No 240
>PHA02984 hypothetical protein; Provisional
Probab=32.39 E-value=2.8e+02 Score=26.18 Aligned_cols=52 Identities=13% Similarity=0.135 Sum_probs=38.5
Q ss_pred EEEEEeceEEEEEEccCCceEEEEEecCCcEEEEcCCcEEEEeeCCCCeEEEEE
Q 018395 248 VTYIVRGSGRAQIVGPDGKRVLETTVKAGNLFIVPRFYVVSKIADPDGLAWFSI 301 (356)
Q Consensus 248 i~~v~~G~~~~~iv~~~g~~~~~~~l~~Gdv~vvP~g~~h~~~~~~~~~~~~~~ 301 (356)
.+.|++|+.++.... +.+..+..+.+||.|.+--+.=|.+...+.++.++.+
T Consensus 96 FvlCl~G~~~I~~~~--~~~~is~~I~kGeaf~md~~t~h~i~T~~knl~L~Vi 147 (286)
T PHA02984 96 FVLCLNGKTSIECFN--KGSKITNTIKKGEAFTLNLKTKYVTTTKDKNLHLAVI 147 (286)
T ss_pred EEEEcCCeEEEEEec--CCceeeeEEecCceEEEEccceEEEEeCCCceEEEEE
Confidence 344566777777665 4456788999999999999999998666656665544
No 241
>PRK15186 AraC family transcriptional regulator; Provisional
Probab=31.93 E-value=1.2e+02 Score=28.74 Aligned_cols=47 Identities=9% Similarity=-0.108 Sum_probs=37.1
Q ss_pred CCCEEEEEEeCeEEEEEEcCCCceEEEEEcCCCEEEeCCCcEEEEEecCCC
Q 018395 56 DSARVAYVLQGSGVAGIVLPEKEEKVVAIKKGDGIALPFGVVTWWYNKEDT 106 (356)
Q Consensus 56 ~a~e~~yVl~G~~~~~vv~~~~~~~~~~l~~GDv~~iP~G~~H~~~N~g~e 106 (356)
-..-++++.+|...+.. +++ ....+.++..+++|.+..|.+.|...+
T Consensus 37 ~~~~li~v~~G~~~i~~--~~g--~~l~i~~p~~~~~p~~~~~~~~~~~~~ 83 (291)
T PRK15186 37 LQSVLIKLTTGKISITT--SSG--EYITASGPMLIFLAKDQTIHITMEETH 83 (291)
T ss_pred cceEEEEeccceEEEEe--CCC--ceEEeCCCeEEEEeCCcEEEEEecccC
Confidence 45678899999998864 233 236999999999999999999996543
No 242
>KOG3416 consensus Predicted nucleic acid binding protein [General function prediction only]
Probab=31.36 E-value=2.1e+02 Score=23.77 Aligned_cols=63 Identities=13% Similarity=0.154 Sum_probs=46.3
Q ss_pred CCccccCceeEEEEecCCCeecccccccCCeeEEEEEe----ceEEEEEEccCCceEEEEEecCCcEEEEcCCcEEEE
Q 018395 216 PLVGEVGCGADLVRLDGKAMCSPGFSCDSALQVTYIVR----GSGRAQIVGPDGKRVLETTVKAGNLFIVPRFYVVSK 289 (356)
Q Consensus 216 p~l~~l~~s~~~v~l~~g~~~~PH~h~~~A~ei~~v~~----G~~~~~iv~~~g~~~~~~~l~~Gdv~vvP~g~~h~~ 289 (356)
|.|+. +.+.++-|+.|.... +...+|+..+.- |+..+++-+..| ..++|||++-+-.||..+.
T Consensus 12 P~~kN--~~v~fIvl~~g~~tk----Tkdg~~v~~~kVaD~TgsI~isvW~e~~-----~~~~PGDIirLt~Gy~Si~ 78 (134)
T KOG3416|consen 12 PGLKN--INVTFIVLEYGRATK----TKDGHEVRSCKVADETGSINISVWDEEG-----CLIQPGDIIRLTGGYASIF 78 (134)
T ss_pred hhhhc--ceEEEEEEeeceeee----ccCCCEEEEEEEecccceEEEEEecCcC-----cccCCccEEEecccchhhh
Confidence 67775 668899999986652 222567776654 577888888655 3589999999999998764
No 243
>KOG2968 consensus Predicted esterase of the alpha-beta hydrolase superfamily (Neuropathy target esterase), contains cAMP-binding domains [General function prediction only]
Probab=31.35 E-value=22 Score=38.81 Aligned_cols=61 Identities=23% Similarity=0.165 Sum_probs=43.3
Q ss_pred CCcccCceEEEEEEecCCCcccCeeeCCCEEEEEEeCeEEEEEEcCCCce-EEEEEcCCCEE
Q 018395 30 PMLRQGNIGAAKLALEKNGFALPHYCDSARVAYVLQGSGVAGIVLPEKEE-KVVAIKKGDGI 90 (356)
Q Consensus 30 p~l~~~~~~~~~~~l~Pg~~~~pH~h~a~e~~yVl~G~~~~~vv~~~~~~-~~~~l~~GDv~ 90 (356)
|-++..++++..+.|+||-..--.=-.+++++||+.|+.+.-.-.++++. ...+..+||++
T Consensus 499 p~lr~~D~AldWv~l~~g~alyrqgD~Sd~iyvVl~GRlRsv~~~~~~k~~i~~EygrGd~i 560 (1158)
T KOG2968|consen 499 PFLRKLDFALDWVRLEPGQALYRQGDSSDSIYVVLNGRLRSVIRQSGGKKEIVGEYGRGDLI 560 (1158)
T ss_pred HHHhhhhhhcceEEeccccHHHhcCCccCcEEEEecCeehhhhhccCccchhhhhccCccee
Confidence 56667789999999999987655444889999999999987543233321 23455666665
No 244
>KOG2968 consensus Predicted esterase of the alpha-beta hydrolase superfamily (Neuropathy target esterase), contains cAMP-binding domains [General function prediction only]
Probab=31.06 E-value=23 Score=38.67 Aligned_cols=62 Identities=23% Similarity=0.299 Sum_probs=47.2
Q ss_pred CCccccCceeEEEEecCCCeecccccccCCeeEEEEEeceEEEEEEccCCceEEEEEecCCcEE
Q 018395 216 PLVGEVGCGADLVRLDGKAMCSPGFSCDSALQVTYIVRGSGRAQIVGPDGKRVLETTVKAGNLF 279 (356)
Q Consensus 216 p~l~~l~~s~~~v~l~~g~~~~PH~h~~~A~ei~~v~~G~~~~~iv~~~g~~~~~~~l~~Gdv~ 279 (356)
|-|..++.++.++.|.||-+.--.= ++++++.||+.|+.|--.--+.|++.+-.+..+||++
T Consensus 499 p~lr~~D~AldWv~l~~g~alyrqg--D~Sd~iyvVl~GRlRsv~~~~~~k~~i~~EygrGd~i 560 (1158)
T KOG2968|consen 499 PFLRKLDFALDWVRLEPGQALYRQG--DSSDSIYVVLNGRLRSVIRQSGGKKEIVGEYGRGDLI 560 (1158)
T ss_pred HHHhhhhhhcceEEeccccHHHhcC--CccCcEEEEecCeehhhhhccCccchhhhhccCccee
Confidence 5677789999999999997764333 2388999999999987666566655455677888876
No 245
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=30.06 E-value=71 Score=21.32 Aligned_cols=31 Identities=23% Similarity=0.194 Sum_probs=24.0
Q ss_pred CCeecccccccCCe--eEEEEEeceEEEEEEccC
Q 018395 233 KAMCSPGFSCDSAL--QVTYIVRGSGRAQIVGPD 264 (356)
Q Consensus 233 g~~~~PH~h~~~A~--ei~~v~~G~~~~~iv~~~ 264 (356)
||++.-++-|. .. .++...+..+++.++|..
T Consensus 1 GAvR~~kFsP~-~~~~DLL~~~E~~g~vhi~D~R 33 (43)
T PF10313_consen 1 GAVRCCKFSPE-PGGNDLLAWAEHQGRVHIVDTR 33 (43)
T ss_pred CCeEEEEeCCC-CCcccEEEEEccCCeEEEEEcc
Confidence 55666666654 44 899999999999999965
No 246
>COG3822 ABC-type sugar transport system, auxiliary component [General function prediction only]
Probab=29.85 E-value=2.4e+02 Score=25.28 Aligned_cols=67 Identities=16% Similarity=0.153 Sum_probs=43.1
Q ss_pred EEEecCCCeecccccccCCeeEEEEEec--eEEEEEEccC----------------Cce-EEE----EEecCCcEEEEcC
Q 018395 227 LVRLDGKAMCSPGFSCDSALQVTYIVRG--SGRAQIVGPD----------------GKR-VLE----TTVKAGNLFIVPR 283 (356)
Q Consensus 227 ~v~l~~g~~~~PH~h~~~A~ei~~v~~G--~~~~~iv~~~----------------g~~-~~~----~~l~~Gdv~vvP~ 283 (356)
.+.+.+|-+.+.|.|.+ -.| -++-+| +.+++..... |.+ ... -+|+||+-+-+|.
T Consensus 90 iM~vr~gQvtPmHrH~~-k~e-Diinrgggtlv~el~~~d~~~~~~~ks~vtv~~dg~r~~~~ag~~lkL~PGesitL~P 167 (225)
T COG3822 90 IMHVRPGQVTPMHRHWR-KPE-DIINRGGGTLVVELWNVDLVEGQDEKSDVTVPVDGCRQTHTAGSQLKLSPGESITLPP 167 (225)
T ss_pred eEEeccCCcCccccccc-chh-hhhhcCCceEEEEEeccccccCcCCCCCeEecCCCcEEEeccceeEEECCCCcEecCC
Confidence 34678899999999986 222 233333 4444443332 222 111 1899999999999
Q ss_pred CcEEEEeeCCCC
Q 018395 284 FYVVSKIADPDG 295 (356)
Q Consensus 284 g~~h~~~~~~~~ 295 (356)
|..|+.-+..+.
T Consensus 168 g~~HsFwae~g~ 179 (225)
T COG3822 168 GLYHSFWAEEGG 179 (225)
T ss_pred CceeeeeecCCc
Confidence 999999876655
No 247
>PRK04043 tolB translocation protein TolB; Provisional
Probab=29.82 E-value=3.4e+02 Score=27.10 Aligned_cols=49 Identities=20% Similarity=0.325 Sum_probs=33.8
Q ss_pred EecCCCee-cccccccCCeeEEEEEe--ceEEEEEEccCCceEEEEEecCCcE
Q 018395 229 RLDGKAMC-SPGFSCDSALQVTYIVR--GSGRAQIVGPDGKRVLETTVKAGNL 278 (356)
Q Consensus 229 ~l~~g~~~-~PH~h~~~A~ei~~v~~--G~~~~~iv~~~g~~~~~~~l~~Gdv 278 (356)
.|..++.. .|.|.|+ ...|+|... |+..+.+++-+|+..+.-.+.+|++
T Consensus 363 ~LT~~~~~~~p~~SPD-G~~I~f~~~~~~~~~L~~~~l~g~~~~~l~~~~g~~ 414 (419)
T PRK04043 363 RLTANGVNQFPRFSSD-GGSIMFIKYLGNQSALGIIRLNYNKSFLFPLKVGKI 414 (419)
T ss_pred ECCCCCCcCCeEECCC-CCEEEEEEccCCcEEEEEEecCCCeeEEeecCCCcc
Confidence 44444444 4999999 777888774 6777889998886544444566764
No 248
>PF01959 DHQS: 3-dehydroquinate synthase (EC 4.6.1.3); InterPro: IPR002812 3-Dehydroquinate synthase (4.2.3.4 from EC) is an enzyme in the common pathway of aromatic amino acid biosynthesis that catalyses the conversion of 3-deoxy-D-arabino-heptulosonic acid 7-phosphate (DAHP) into 3-dehydroquinic acid []. This synthesis of aromatic amino acids is an essential metabolic function for most prokaryotic as well as lower eukaryotic cells, including plants. The pathway is absent in humans; therefore, DHQS represents a potential target for the development of novel and selective antimicrobial agents. Owing to the threat posed by the spread of pathogenic bacteria resistant to many currently used antimicrobial drugs, there is clearly a need to develop new anti-infective drugs acting at novel targets. A further potential use for DHQS inhibitors is as herbicides [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process
Probab=29.75 E-value=2.1e+02 Score=28.09 Aligned_cols=57 Identities=21% Similarity=0.390 Sum_probs=49.6
Q ss_pred ceeEEEEecCCCeecccccccCCeeEEEEEeceEEEEEEccCCceEEEEEecCCcEEE
Q 018395 223 CGADLVRLDGKAMCSPGFSCDSALQVTYIVRGSGRAQIVGPDGKRVLETTVKAGNLFI 280 (356)
Q Consensus 223 ~s~~~v~l~~g~~~~PH~h~~~A~ei~~v~~G~~~~~iv~~~g~~~~~~~l~~Gdv~v 280 (356)
..+.|++++..-|+.-.-... ..++..+++.-=.+.++.|+|..+=-++|++||-+.
T Consensus 277 ~~VGRvKIE~RPLllIeA~~~-g~~~svilQnaetIRlv~p~G~~vsVt~Lk~GD~vL 333 (354)
T PF01959_consen 277 AIVGRVKIERRPLLLIEAEAD-GKRISVILQNAETIRLVGPDGEPVSVTELKPGDEVL 333 (354)
T ss_pred EEeeEEEEeecceEEEEEEeC-CeEEEEEEecCcEEEEECCCCCEeeeeecCCCCEEE
Confidence 568899999999998888877 889999999998999999999765556999999874
No 249
>COG1465 Predicted alternative 3-dehydroquinate synthase [Amino acid transport and metabolism]
Probab=29.74 E-value=2.1e+02 Score=27.38 Aligned_cols=54 Identities=20% Similarity=0.385 Sum_probs=41.7
Q ss_pred EEEEEecCCCcccCeee-CCCEEEEEEeCeEEEEEEcCCCc-eEEEEEcCCCEEEe
Q 018395 39 AAKLALEKNGFALPHYC-DSARVAYVLQGSGVAGIVLPEKE-EKVVAIKKGDGIAL 92 (356)
Q Consensus 39 ~~~~~l~Pg~~~~pH~h-~a~e~~yVl~G~~~~~vv~~~~~-~~~~~l~~GDv~~i 92 (356)
++++.++..-+++---- ...++..+||---++.++.++|+ ..+.+|++||-+.+
T Consensus 301 VGRvKIErRPl~lIeAey~g~~i~tiLQNAETIkLv~~dG~pvSV~eLk~GD~vlv 356 (376)
T COG1465 301 VGRVKIERRPLMLIEAEYEGVEISTILQNAETIKLVNPDGEPVSVAELKPGDEVLV 356 (376)
T ss_pred EEEEEeecCceEEEEEEecCcEEEEEeccceeEEEEcCCCcEeeeEecCCCCEEEE
Confidence 57778877776665544 78899999999888999998886 44678999986643
No 250
>PF00325 Crp: Bacterial regulatory proteins, crp family; InterPro: IPR001808 Numerous bacterial transcription regulatory proteins bind DNA via a helix-turn-helix (HTH) motif. These proteins are very diverse, but for convenience may be grouped into subfamilies on the basis of sequence similarity. This family groups together a range of proteins, including anr, crp, clp, cysR, fixK, flp, fnr, fnrN, hlyX and ntcA [, ]. Within this family, the HTH motif is situated towards the C terminus.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 2OZ6_A 1CGP_B 2GZW_C 1O3T_B 3ROU_A 2CGP_A 3RDI_A 1I5Z_A 3IYD_H 3FWE_B ....
Probab=29.60 E-value=39 Score=21.00 Aligned_cols=23 Identities=17% Similarity=0.277 Sum_probs=17.1
Q ss_pred CcHHHHHhhccCCHHHHHHhhcc
Q 018395 140 FSTEFVSRAWDLDENTVKTLVGK 162 (356)
Q Consensus 140 ~~~~vl~~af~~~~~~~~~l~~~ 162 (356)
++.+=+|..+|++.|++.++++.
T Consensus 3 mtr~diA~~lG~t~ETVSR~l~~ 25 (32)
T PF00325_consen 3 MTRQDIADYLGLTRETVSRILKK 25 (32)
T ss_dssp --HHHHHHHHTS-HHHHHHHHHH
T ss_pred cCHHHHHHHhCCcHHHHHHHHHH
Confidence 45677899999999999988765
No 251
>PRK03606 ureidoglycolate hydrolase; Provisional
Probab=29.01 E-value=3.3e+02 Score=23.57 Aligned_cols=65 Identities=12% Similarity=-0.056 Sum_probs=48.4
Q ss_pred ecccccccCCeeEEEEEeceEEEEEEccCCc----eEEEEEecCCcEEEEcCCcEEEE-eeCCCCeEEEEE
Q 018395 236 CSPGFSCDSALQVTYIVRGSGRAQIVGPDGK----RVLETTVKAGNLFIVPRFYVVSK-IADPDGLAWFSI 301 (356)
Q Consensus 236 ~~PH~h~~~A~ei~~v~~G~~~~~iv~~~g~----~~~~~~l~~Gdv~vvP~g~~h~~-~~~~~~~~~~~~ 301 (356)
...=.||. .++..+-+.|+..+-+|.+.+. .+-...+.+|+-+..=+|.||.- .+-.....|+.+
T Consensus 71 ~~mERHp~-~sQafiPl~~~~~lvvVA~~~~~~~~~~raF~~~~~qgV~y~~G~WH~pl~~l~~~~dF~vv 140 (162)
T PRK03606 71 RMLERHPL-GSQAFIPLNGRPFLVVVAPDGDGDPGTPRAFVTNGRQGVNYHRGVWHHPLLALGEVSDFLVV 140 (162)
T ss_pred eeEEeCCC-ceEEEEECCCCEEEEEEeCCCCCCccceEEEEecCCcEEEeCCCcccccccccCCCceEEEE
Confidence 34456788 8899999999999999998753 23344788999999999999976 343444555444
No 252
>cd04456 S1_IF1A_like S1_IF1A_like: Translation initiation factor IF1A-like, S1-like RNA-binding domain. IF1A is also referred to as eIF1A in eukaryotes and aIF1A in archaea. S1-like RNA-binding domains are found in a wide variety of RNA-associated proteins. IF1A is essential for translation initiation. eIF1A acts synergistically with eIF1 to mediate assembly of ribosomal initiation complexes at the initiation codon and maintain the accuracy of this process by recognizing and destabilizing aberrant preinitiation complexes from the mRNA. Without eIF1A and eIF1, 43S ribosomal preinitiation complexes can bind to the cap-proximal region, but are unable to reach the initiation codon. eIF1a also enhances the formation of 5'-terminal complexes in the presence of other translation initiation factors. This protein family is only found in eukaryotes and archaea.
Probab=28.74 E-value=2.1e+02 Score=21.49 Aligned_cols=28 Identities=36% Similarity=0.624 Sum_probs=18.0
Q ss_pred ceEEEEEEccCCceEEE---------EEecCCcEEEE
Q 018395 254 GSGRAQIVGPDGKRVLE---------TTVKAGNLFIV 281 (356)
Q Consensus 254 G~~~~~iv~~~g~~~~~---------~~l~~Gdv~vv 281 (356)
|....++.|++|...+. --+.+||.+.+
T Consensus 11 G~~~~~V~~~dg~~~l~~i~gK~Rk~iwI~~GD~VlV 47 (78)
T cd04456 11 GNNRHEVECADGQRRLVSIPGKLRKNIWIKRGDFLIV 47 (78)
T ss_pred CCCEEEEEECCCCEEEEEEchhhccCEEEcCCCEEEE
Confidence 67778888887753221 14677777766
No 253
>PRK10856 cytoskeletal protein RodZ; Provisional
Probab=28.40 E-value=1.6e+02 Score=28.51 Aligned_cols=57 Identities=5% Similarity=-0.003 Sum_probs=43.6
Q ss_pred eeEEEEEeceEEEEEEccCCceEEEEEecCCcEEEEcCCcEEEEeeCCCCeEEEEEE
Q 018395 246 LQVTYIVRGSGRAQIVGPDGKRVLETTVKAGNLFIVPRFYVVSKIADPDGLAWFSII 302 (356)
Q Consensus 246 ~ei~~v~~G~~~~~iv~~~g~~~~~~~l~~Gdv~vvP~g~~h~~~~~~~~~~~~~~~ 302 (356)
.++.+-..|...++|.|.+|+.+++..+++|+.+-+--.-+..++.|.-...-+.++
T Consensus 252 ~~L~i~f~~d~Wv~V~da~Gk~l~~g~~~~G~~~~~~g~~p~~v~iG~~~~v~i~~n 308 (331)
T PRK10856 252 NALVMNFTADCWLEVTDATGKKLFSGMQRKGGNLNLTGQAPYKLKIGAPAAVQIQYQ 308 (331)
T ss_pred ceEEEEEcCCeEEEEEeCCCcChhhhccCCCceEEecCCceEEEEEcCCCceEEEEC
Confidence 367788889999999999999999999999999888655555566665544444443
No 254
>PF06719 AraC_N: AraC-type transcriptional regulator N-terminus; InterPro: IPR009594 This entry represents the N terminus of bacterial ARAC-type transcriptional regulators. In Escherichia coli these regulate the L-arabinose operon through sensing the presence of arabinose, and when the sugar is present, transmitting this information from the arabinose-binding domains to the protein s DNA-binding domains []. This family might represent the N-terminal arm of the protein, which binds to the C-terminal DNA binding domains to hold them in a state where the protein prefers to loop and remain non-activating []. This domain is associated with the IPR000005 from INTERPRO domain.
Probab=27.92 E-value=3.3e+02 Score=22.93 Aligned_cols=42 Identities=17% Similarity=0.150 Sum_probs=34.0
Q ss_pred eCCCEEEEEEeCeEEEEEEcCCCceEEEEEcCCCEEEeCCCcEEEEE
Q 018395 55 CDSARVAYVLQGSGVAGIVLPEKEEKVVAIKKGDGIALPFGVVTWWY 101 (356)
Q Consensus 55 h~a~e~~yVl~G~~~~~vv~~~~~~~~~~l~~GDv~~iP~G~~H~~~ 101 (356)
....-+++|++|+=++.+ + ...++..+|+.++.+...+-...
T Consensus 21 ~y~p~i~~vlQG~K~~~~---g--~~~~~Y~~g~~lv~~~~lPv~~~ 62 (155)
T PF06719_consen 21 VYEPSICIVLQGSKRVHL---G--DQVFEYDAGQYLVSSVDLPVESE 62 (155)
T ss_pred ecCCeEEEEEeeeEEEEE---C--CceEEecCCcEEEecCCCcEEEE
Confidence 367789999999988876 2 24589999999999999876654
No 255
>PRK09392 ftrB transcriptional activator FtrB; Provisional
Probab=27.58 E-value=1.8e+02 Score=26.01 Aligned_cols=53 Identities=15% Similarity=0.041 Sum_probs=37.2
Q ss_pred eEEEEecCCCeecccccccCCeeEEEEEeceEEEEEEccCCceEEEEEecCCcEEE
Q 018395 225 ADLVRLDGKAMCSPGFSCDSALQVTYIVRGSGRAQIVGPDGKRVLETTVKAGNLFI 280 (356)
Q Consensus 225 ~~~v~l~~g~~~~PH~h~~~A~ei~~v~~G~~~~~iv~~~g~~~~~~~l~~Gdv~v 280 (356)
+....+++|.+.. +-.-. +..+.+|++|.+++..... |+...-..+.+||+|-
T Consensus 30 ~~~~~~~~ge~l~-~~g~~-~~~~~~v~~G~v~~~~~~~-~~~~~i~~~~~g~~~g 82 (236)
T PRK09392 30 AFLQRFPPGTMLI-TEGEP-ADFLFVVLDGLVELSASSQ-DRETTLAILRPVSTFI 82 (236)
T ss_pred cceeecCCCCEEE-eCCCc-cceEEEEEeCEEEEEEcCC-CceEEEEEeCCCchhh
Confidence 3456778887663 22333 6689999999999987664 4444456889999874
No 256
>TIGR00178 monomer_idh isocitrate dehydrogenase, NADP-dependent, monomeric type. The monomeric type of isocitrate dehydrogenase has been found so far in a small number of species, including Azotobacter vinelandii, Corynebacterium glutamicum, Rhodomicrobium vannielii, and Neisseria meningitidis. It is NADP-specific.
Probab=27.56 E-value=55 Score=34.24 Aligned_cols=34 Identities=26% Similarity=0.579 Sum_probs=29.2
Q ss_pred EEEEEeceEEEEEEccCCceEEEEEecCCcEEEE
Q 018395 248 VTYIVRGSGRAQIVGPDGKRVLETTVKAGNLFIV 281 (356)
Q Consensus 248 i~~v~~G~~~~~iv~~~g~~~~~~~l~~Gdv~vv 281 (356)
=.|-+.+.|.+.|++.+|+.++...|++||+|-.
T Consensus 425 kTFei~~~G~v~Vvd~~G~vl~eh~Ve~GDIwRm 458 (741)
T TIGR00178 425 KTFQIPADGVVRVVDSSGEVLLEQSVEAGDIWRM 458 (741)
T ss_pred cceecCCCceEEEEeCCCCEEEEeeccCCcchhh
Confidence 3466788889999999999999999999999864
No 257
>PHA02951 Hypothetical protein; Provisional
Probab=27.27 E-value=2.1e+02 Score=27.48 Aligned_cols=44 Identities=16% Similarity=0.205 Sum_probs=37.3
Q ss_pred CeeEEEEEeceEEEEEEccCCceEEEEEecCCcEEEEcCCcEEEE
Q 018395 245 ALQVTYIVRGSGRAQIVGPDGKRVLETTVKAGNLFIVPRFYVVSK 289 (356)
Q Consensus 245 A~ei~~v~~G~~~~~iv~~~g~~~~~~~l~~Gdv~vvP~g~~h~~ 289 (356)
+-....|++-+|+.++.=|+. ..+...+++||+.|+|.......
T Consensus 124 gFvAtICIKNeGiSgl~Vp~t-~~LK~ni~~GD~IVsRs~rGv~f 167 (337)
T PHA02951 124 GFTATICLKNEGISGLYIPGT-SVLKINICQGDTIVSRSSRGVQF 167 (337)
T ss_pred ceEEEEEEcCCCeeEEEeCCC-chheeeeccCcEEEEecccccee
Confidence 677889999999999998874 44577899999999999887776
No 258
>COG3718 IolB Uncharacterized enzyme involved in inositol metabolism [Carbohydrate transport and metabolism]
Probab=27.10 E-value=5.1e+02 Score=24.03 Aligned_cols=88 Identities=19% Similarity=0.135 Sum_probs=55.5
Q ss_pred CCCcEEEEeCCCCCCCccccCceeEEEEecCCCeecccccccCCeeEEEEEeceEEEEEEccC----CceEEEEEecCCc
Q 018395 202 KNGGRVVLLNTKNLPLVGEVGCGADLVRLDGKAMCSPGFSCDSALQVTYIVRGSGRAQIVGPD----GKRVLETTVKAGN 277 (356)
Q Consensus 202 ~~gG~~~~~~~~~~p~l~~l~~s~~~v~l~~g~~~~PH~h~~~A~ei~~v~~G~~~~~iv~~~----g~~~~~~~l~~Gd 277 (356)
..-|++..+++.+ +.+.. ++....+|++|...+--.-. --.+++++.|++.++.-+.. |.|.--.+=++=|
T Consensus 11 ~~~g~v~~vtp~s-agw~Y--VGF~~~~L~~Ges~~~~~~~--~E~clV~v~Gk~~vs~~g~~f~~iG~R~SvFe~~p~~ 85 (270)
T COG3718 11 AGVGLVQDVTPES-AGWEY--VGFRLLRLAAGESATEETGD--RERCLVLVTGKATVSAHGSTFGEIGTRMSVFERKPPD 85 (270)
T ss_pred CCCcceEEecCCC-CCcee--EEEEEEEccCCCcccccCCC--ceEEEEEEeeeEEEeeccchHhhcccccccccCCCCC
Confidence 3356777777643 44454 45777899999888655532 23456667899988765542 3331111334669
Q ss_pred EEEEcCCcEEEEeeCCC
Q 018395 278 LFIVPRFYVVSKIADPD 294 (356)
Q Consensus 278 v~vvP~g~~h~~~~~~~ 294 (356)
.+++|.|-...+.+..+
T Consensus 86 ~vYvp~g~~~~vtA~t~ 102 (270)
T COG3718 86 SVYVPAGSAFSVTATTD 102 (270)
T ss_pred eEEecCCceEEEEeecc
Confidence 99999998877766433
No 259
>PRK05467 Fe(II)-dependent oxygenase superfamily protein; Provisional
Probab=26.86 E-value=4.9e+02 Score=23.79 Aligned_cols=23 Identities=17% Similarity=0.138 Sum_probs=20.2
Q ss_pred EEEEEcCCCEEEeCCCcEEEEEe
Q 018395 80 KVVAIKKGDGIALPFGVVTWWYN 102 (356)
Q Consensus 80 ~~~~l~~GDv~~iP~G~~H~~~N 102 (356)
....+++||++++|....|...=
T Consensus 141 ~~Vkp~aG~~vlfps~~lH~v~p 163 (226)
T PRK05467 141 HRVKLPAGDLVLYPSTSLHRVTP 163 (226)
T ss_pred EEEecCCCeEEEECCCCceeeee
Confidence 45789999999999999998865
No 260
>COG3123 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=26.31 E-value=2.5e+02 Score=21.63 Aligned_cols=45 Identities=24% Similarity=0.281 Sum_probs=34.0
Q ss_pred ccccCCeeEEEEEeceEEEEEEccCCceEEEEEecCCcEEEEcCCcEEEE
Q 018395 240 FSCDSALQVTYIVRGSGRAQIVGPDGKRVLETTVKAGNLFIVPRFYVVSK 289 (356)
Q Consensus 240 ~h~~~A~ei~~v~~G~~~~~iv~~~g~~~~~~~l~~Gdv~vvP~g~~h~~ 289 (356)
+-+- +.|+.-|+.|...+-+..+..= ....+|.+|.||...-.-+
T Consensus 37 FgTa-~~E~Mtvv~Gal~v~lpgs~dW----q~~~~Ge~F~VpgnS~F~l 81 (94)
T COG3123 37 FGTA-APEEMTVVSGALTVLLPGSDDW----QVYTAGEVFNVPGNSEFDL 81 (94)
T ss_pred eccC-CceEEEEEeeEEEEEcCCCccc----EEecCCceEEcCCCCeEEE
Confidence 3454 8899999999998888776531 3577999999997765544
No 261
>COG0234 GroS Co-chaperonin GroES (HSP10) [Posttranslational modification, protein turnover, chaperones]
Probab=26.20 E-value=2.4e+02 Score=22.29 Aligned_cols=58 Identities=19% Similarity=0.120 Sum_probs=34.6
Q ss_pred CCCcccCeee--CCCEEEEEEeCeEEEEEEcCCCceEEEEEcCCCEEEeCCCcEEEEEecCCC
Q 018395 46 KNGFALPHYC--DSARVAYVLQGSGVAGIVLPEKEEKVVAIKKGDGIALPFGVVTWWYNKEDT 106 (356)
Q Consensus 46 Pg~~~~pH~h--~a~e~~yVl~G~~~~~vv~~~~~~~~~~l~~GDv~~iP~G~~H~~~N~g~e 106 (356)
.|++..|-.+ ...+=-+|.=|.+.. +.++......++.||.++|.....--+..+|++
T Consensus 22 ~gGIvlpdsakeK~~~g~VvAVG~G~~---~~~g~~~~~~VkvGD~Vlf~ky~G~evk~dgee 81 (96)
T COG0234 22 AGGIVLPDSAKEKPQEGEVVAVGPGRR---DENGELVPLDVKVGDRVLFGKYAGTEVKIDGEE 81 (96)
T ss_pred cCcEEecCccccCCcceEEEEEcccee---cCCCCEeccccccCCEEEECccCCcEEEECCEE
Confidence 4566666655 223333333355443 223334458999999999999988666555544
No 262
>PLN03192 Voltage-dependent potassium channel; Provisional
Probab=25.61 E-value=1.3e+02 Score=32.98 Aligned_cols=52 Identities=17% Similarity=-0.012 Sum_probs=34.0
Q ss_pred EEEEecCCCcccCeeeCCCEEEEEEeCeEEEEEEcCCCceEEEEEcCCCEEE
Q 018395 40 AKLALEKNGFALPHYCDSARVAYVLQGSGVAGIVLPEKEEKVVAIKKGDGIA 91 (356)
Q Consensus 40 ~~~~l~Pg~~~~pH~h~a~e~~yVl~G~~~~~vv~~~~~~~~~~l~~GDv~~ 91 (356)
....+.||..+-.-=..++++++|++|+..+.....+.......+++||+|-
T Consensus 398 ~~~~~~pge~I~~qge~~~~lY~I~~G~V~i~~~~~~~e~~l~~l~~Gd~FG 449 (823)
T PLN03192 398 KAEYIPPREDVIMQNEAPDDVYIVVSGEVEIIDSEGEKERVVGTLGCGDIFG 449 (823)
T ss_pred heeeeCCCCEEEECCCCCceEEEEEecEEEEEEecCCcceeeEEccCCCEec
Confidence 3456777765543222577899999999988542222223357899999883
No 263
>PRK05467 Fe(II)-dependent oxygenase superfamily protein; Provisional
Probab=25.57 E-value=1.8e+02 Score=26.62 Aligned_cols=32 Identities=19% Similarity=0.243 Sum_probs=25.5
Q ss_pred EEecCCcEEEEcCCcEEEEeeCCCCeEEEEEE
Q 018395 271 TTVKAGNLFIVPRFYVVSKIADPDGLAWFSII 302 (356)
Q Consensus 271 ~~l~~Gdv~vvP~g~~h~~~~~~~~~~~~~~~ 302 (356)
-.+.+||++++|...+|-...-..+..+.++.
T Consensus 143 Vkp~aG~~vlfps~~lH~v~pVt~G~R~~~~~ 174 (226)
T PRK05467 143 VKLPAGDLVLYPSTSLHRVTPVTRGVRVASFF 174 (226)
T ss_pred EecCCCeEEEECCCCceeeeeccCccEEEEEe
Confidence 46889999999999999976556677777654
No 264
>PF14326 DUF4384: Domain of unknown function (DUF4384)
Probab=25.54 E-value=2.9e+02 Score=20.60 Aligned_cols=61 Identities=16% Similarity=0.297 Sum_probs=33.7
Q ss_pred CeeEEEEEeceEEEEEEccCCceEEEEEecCCcEEEEc--CCcEEEEeeCCCCeEEEEEEcCCC
Q 018395 245 ALQVTYIVRGSGRAQIVGPDGKRVLETTVKAGNLFIVP--RFYVVSKIADPDGLAWFSIITTPN 306 (356)
Q Consensus 245 A~ei~~v~~G~~~~~iv~~~g~~~~~~~l~~Gdv~vvP--~g~~h~~~~~~~~~~~~~~~~~~~ 306 (356)
+.-.++.+.-.|.++.+-|+..+ -+..+++|....+| .....+......+.+.+.+..+..
T Consensus 19 ~Yl~l~~~~~~G~v~~L~Pn~~~-~~~~v~ag~~~~iP~~~~~~~~~v~~P~G~e~i~~ias~~ 81 (83)
T PF14326_consen 19 GYLYLFYIDADGKVTLLFPNRYQ-PDNFVKAGQTYTIPDPGDRFSFTVDPPFGKERIVAIASTE 81 (83)
T ss_pred eEEEEEEECCCCCEEEEecCccc-cCceEcCCceEEcCCCCCceEEEEcCCCCcEEEEEEEECC
Confidence 33334444446677777776322 13578999999999 333334344444555444433433
No 265
>PF04773 FecR: FecR protein; InterPro: IPR006860 FecR is involved in regulation of iron dicitrate transport. In the absence of citrate FecR inactivates FecI. FecR is probably a sensor that recognises iron dicitrate in the periplasm.
Probab=25.17 E-value=2.9e+02 Score=20.58 Aligned_cols=58 Identities=10% Similarity=-0.001 Sum_probs=41.0
Q ss_pred EEEecCCCccc-Ceee-CCCEEEEEEeCeEEEEEEcCCCceEEEEEcCCCEEEeCCCcEEEE
Q 018395 41 KLALEKNGFAL-PHYC-DSARVAYVLQGSGVAGIVLPEKEEKVVAIKKGDGIALPFGVVTWW 100 (356)
Q Consensus 41 ~~~l~Pg~~~~-pH~h-~a~e~~yVl~G~~~~~vv~~~~~~~~~~l~~GDv~~iP~G~~H~~ 100 (356)
.+.|.|++.+. .... .....+.+.+|+..+.+-.... .. +.++.++..+...|...++
T Consensus 20 ~v~l~~~s~~~~~~~~~~~~~~~~L~~G~~~~~~~~~~~-~~-~~V~T~~~~i~v~GT~f~v 79 (98)
T PF04773_consen 20 RVRLGPNSRVSVDRDSGSEPTRLRLLSGEILFDVSPGKK-RP-FEVRTPTATIGVRGTRFSV 79 (98)
T ss_pred EEEECCCcEEEEEcccCCCceEEEEcCCCEEEEEcccCC-CC-EEEEeCCEEEEEecCEEEE
Confidence 58899999882 2222 4455788999999888744322 22 8999999999999965533
No 266
>PTZ00329 eukaryotic translation initiation factor 1A; Provisional
Probab=24.75 E-value=2.2e+02 Score=24.52 Aligned_cols=36 Identities=25% Similarity=0.484 Sum_probs=19.5
Q ss_pred eeEEEEEe--ceEEEEEEccCCceEE---------EEEecCCcEEEE
Q 018395 246 LQVTYIVR--GSGRAQIVGPDGKRVL---------ETTVKAGNLFIV 281 (356)
Q Consensus 246 ~ei~~v~~--G~~~~~iv~~~g~~~~---------~~~l~~Gdv~vv 281 (356)
.+++.|++ |.+++.+.|.+|..++ .-.+.+||++.|
T Consensus 33 q~~g~V~~~LGn~~f~V~c~dG~~rLa~I~GKmRK~IWI~~GD~VlV 79 (155)
T PTZ00329 33 QEYAQVLRMLGNGRLEAYCFDGVKRLCHIRGKMRKRVWINIGDIILV 79 (155)
T ss_pred cEEEEEEEEcCCCEEEEEECCCCEEEEEeeccceeeEEecCCCEEEE
Confidence 34444444 4556666666553211 125777887776
No 267
>PF02796 HTH_7: Helix-turn-helix domain of resolvase; InterPro: IPR006120 Site-specific recombination plays an important role in DNA rearrangement in prokaryotic organisms. Two types of site-specific recombination are known to occur: Recombination between inverted repeats resulting in the reversal of a DNA segment. Recombination between repeat sequences on two DNA molecules resulting in their cointegration, or between repeats on one DNA molecule resulting in the excision of a DNA fragment. Site-specific recombination is characterised by a strand exchange mechanism that requires no DNA synthesis or high energy cofactor; the phosphodiester bond energy is conserved in a phospho-protein linkage during strand cleavage and re-ligation. Two unrelated families of recombinases are currently known []. The first, called the 'phage integrase' family, groups a number of bacterial phage and yeast plasmid enzymes. The second [], called the 'resolvase' family, groups enzymes which share the following structural characteristics: an N-terminal catalytic and dimerization domain that contains a conserved serine residue involved in the transient covalent attachment to DNA IPR006119 from INTERPRO, and a C-terminal helix-turn-helix DNA-binding domain. ; GO: 0000150 recombinase activity, 0003677 DNA binding, 0006310 DNA recombination; PDB: 1ZR2_A 2GM4_B 1RES_A 1ZR4_A 1RET_A 1GDT_B 2R0Q_C 1JKP_C 1IJW_C 1JJ6_C ....
Probab=24.52 E-value=83 Score=20.68 Aligned_cols=24 Identities=21% Similarity=0.403 Sum_probs=18.8
Q ss_pred cCcHHHHHhhccCCHHHHHHhhcc
Q 018395 139 GFSTEFVSRAWDLDENTVKTLVGK 162 (356)
Q Consensus 139 ~~~~~vl~~af~~~~~~~~~l~~~ 162 (356)
+++..-+|+.||++..++-+.+..
T Consensus 21 G~si~~IA~~~gvsr~TvyR~l~~ 44 (45)
T PF02796_consen 21 GMSIAEIAKQFGVSRSTVYRYLNK 44 (45)
T ss_dssp T--HHHHHHHTTS-HHHHHHHHCC
T ss_pred CCCHHHHHHHHCcCHHHHHHHHhc
Confidence 689999999999999999988764
No 268
>smart00783 A_amylase_inhib Alpha amylase inhibitor. Alpha amylase inhibitor inhibits mammalian alpha-amylases specifically, by forming a tight stoichiometric 1:1 complex with alpha-amylase. The inhibitor has no action on plant and microbial alpha amylases.
Probab=24.30 E-value=2.4e+02 Score=20.64 Aligned_cols=41 Identities=20% Similarity=0.228 Sum_probs=32.4
Q ss_pred CeeEEEEEece---EEEEEEccCCceEEEEEecCCcEEEEcCCcE
Q 018395 245 ALQVTYIVRGS---GRAQIVGPDGKRVLETTVKAGNLFIVPRFYV 286 (356)
Q Consensus 245 A~ei~~v~~G~---~~~~iv~~~g~~~~~~~l~~Gdv~vvP~g~~ 286 (356)
.+...+|..|. ..+.++-.+|+..--..+.|||+.-|| ||.
T Consensus 14 sWRYT~v~N~C~~tvsVtV~Y~dg~~~pCr~~~PG~~~Tf~-GYg 57 (69)
T smart00783 14 SWRYTFVTNGCSETVSVTVVYTDGTWGPCRTAAPGDITTFG-GYG 57 (69)
T ss_pred eeEEEeecCCCcccEEEEEEEeCCCcceeEeeCCCCEEEec-ccc
Confidence 45677888884 577888888876656689999999999 875
No 269
>KOG1633 consensus F-box protein JEMMA and related proteins with JmjC, PHD, F-box and LRR domains [Chromatin structure and dynamics]
Probab=24.19 E-value=94 Score=33.84 Aligned_cols=28 Identities=18% Similarity=0.398 Sum_probs=22.7
Q ss_pred EEEEecCCcEEEEcCCcEEEEeeCCCCe
Q 018395 269 LETTVKAGNLFIVPRFYVVSKIADPDGL 296 (356)
Q Consensus 269 ~~~~l~~Gdv~vvP~g~~h~~~~~~~~~ 296 (356)
+...|++|+.++||.||+|.....++.+
T Consensus 196 ~~~~l~~g~T~~iPsGwIhAV~Tp~d~l 223 (776)
T KOG1633|consen 196 YKCILKQGQTLFIPSGWIHAVLTPTDCL 223 (776)
T ss_pred EEEEeccCceEecccceeEeeecCcchh
Confidence 3457999999999999999986655543
No 270
>PLN00208 translation initiation factor (eIF); Provisional
Probab=24.00 E-value=2.4e+02 Score=24.05 Aligned_cols=37 Identities=27% Similarity=0.569 Sum_probs=21.9
Q ss_pred CeeEEEEEe--ceEEEEEEccCCceEE---------EEEecCCcEEEE
Q 018395 245 ALQVTYIVR--GSGRAQIVGPDGKRVL---------ETTVKAGNLFIV 281 (356)
Q Consensus 245 A~ei~~v~~--G~~~~~iv~~~g~~~~---------~~~l~~Gdv~vv 281 (356)
..+++.|++ |.+++.+.|.+|...+ .--+.+||++.|
T Consensus 32 gq~~g~V~~~lGn~~~~V~c~dG~~rLa~IpGKmRKrIWI~~GD~VlV 79 (145)
T PLN00208 32 GQEYAQVLRMLGNGRCEALCIDGTKRLCHIRGKMRKKVWIAAGDIILV 79 (145)
T ss_pred CcEEEEEEEEcCCCEEEEEECCCCEEEEEEeccceeeEEecCCCEEEE
Confidence 445555554 5666777776664211 125778888877
No 271
>COG0853 PanD Aspartate 1-decarboxylase [Coenzyme metabolism]
Probab=23.48 E-value=33 Score=28.20 Aligned_cols=37 Identities=24% Similarity=0.434 Sum_probs=28.3
Q ss_pred CeeEEEEEeceEEEEEEccCCceEEEEEecCCcEEEEcC
Q 018395 245 ALQVTYIVRGSGRAQIVGPDGKRVLETTVKAGNLFIVPR 283 (356)
Q Consensus 245 A~ei~~v~~G~~~~~iv~~~g~~~~~~~l~~Gdv~vvP~ 283 (356)
|.=-.|++.|+.--+++|.||.. ....++||.++|=.
T Consensus 52 aRf~TYvI~g~rGSg~I~lNGAA--Arl~~~GD~VII~s 88 (126)
T COG0853 52 ARFSTYVIAGERGSGVICLNGAA--ARLVQVGDLVIIMS 88 (126)
T ss_pred cEEEEEEEEccCCCcEEEechHH--HhhCCCCCEEEEEE
Confidence 44457999998888899999843 23588999998753
No 272
>cd06919 Asp_decarbox Aspartate alpha-decarboxylase or L-aspartate 1-decarboxylase, a pyruvoyl group-dependent decarboxylase in beta-alanine production. Decarboxylation of aspartate is the major route of beta-alanine production in bacteria, and is catalyzed by the enzyme L-aspartate decarboxylase (ADC), EC:4.1.1.11 which requires a pyruvoyl group for its activity. The pyruvoyl cofactor is covalently bound to the enzyme. The protein is synthesized as a proenzyme and cleaved via self-processing at Gly23-Ser24 to yield an alpha chain (C-terminal fragment) and beta chain (N-terminal fragment), and the pyruvoyl group. Beta-alanine is required for the biosynthesis of pantothenate, in which the enzyme plays a critical regulatory role. The active site of the tetrameric enzyme is located at the interface of two subunits, with a Lysine and a Histidine from the beta chain of one subunit forming the active site with residues from the alpha chain of the adjacent subunit. This alignment
Probab=23.24 E-value=36 Score=27.52 Aligned_cols=35 Identities=17% Similarity=0.321 Sum_probs=26.4
Q ss_pred eEEEEEeceEEEEEEccCCceEEEEEecCCcEEEEcC
Q 018395 247 QVTYIVRGSGRAQIVGPDGKRVLETTVKAGNLFIVPR 283 (356)
Q Consensus 247 ei~~v~~G~~~~~iv~~~g~~~~~~~l~~Gdv~vvP~ 283 (356)
=-.|++.|+.--+++|-||.. ....++||.++|=.
T Consensus 54 f~TYvI~g~~gSg~I~lNGAA--Ar~~~~GD~vII~s 88 (111)
T cd06919 54 FETYVIPGERGSGVICLNGAA--ARLGQPGDRVIIMA 88 (111)
T ss_pred EEEEEEEcCCCCCEEEeCCHH--HhcCCCCCEEEEEE
Confidence 346999998778888888843 23588999998753
No 273
>COG3806 ChrR Transcriptional activator [Transcription]
Probab=22.68 E-value=5.2e+02 Score=23.33 Aligned_cols=85 Identities=14% Similarity=0.228 Sum_probs=58.6
Q ss_pred cCCCcEEEEeCCCCCCCccccCceeEEEEecCCCeecccccccCCeeEEEEEeceEEEEEEccCCceEEEEEecCCcEEE
Q 018395 201 IKNGGRVVLLNTKNLPLVGEVGCGADLVRLDGKAMCSPGFSCDSALQVTYIVRGSGRAQIVGPDGKRVLETTVKAGNLFI 280 (356)
Q Consensus 201 ~~~gG~~~~~~~~~~p~l~~l~~s~~~v~l~~g~~~~PH~h~~~A~ei~~v~~G~~~~~iv~~~g~~~~~~~l~~Gdv~v 280 (356)
...||++..+.-.+ +=...|++..+.||..++-|.|- .-|...|++|- +-+++| ++.+||+.-
T Consensus 111 ~~~G~rv~~v~l~~-----dds~~V~llki~~g~s~P~HtH~--G~E~t~vl~G~----~sde~G------~y~vgD~~~ 173 (216)
T COG3806 111 LGPGGRVEPVRLPT-----DDSRRVALLKIEPGRSFPDHTHV--GIERTAVLEGA----FSDENG------EYLVGDFTL 173 (216)
T ss_pred ecCCcceeecccCC-----CCCceeEEEEeccCccccccccc--ceEEEEEEeec----cccCCC------ccccCceee
Confidence 46688877664332 22577999999999999999996 68999999884 456666 355677777
Q ss_pred EcCCcEEEEee-CCCCeEEEEEE
Q 018395 281 VPRFYVVSKIA-DPDGLAWFSII 302 (356)
Q Consensus 281 vP~g~~h~~~~-~~~~~~~~~~~ 302 (356)
-+-..-|--+. .+.++..++..
T Consensus 174 ~d~~v~H~piv~~~~eClcl~al 196 (216)
T COG3806 174 ADGTVQHSPIVLPPGECLCLAAL 196 (216)
T ss_pred cCCccccccccCCCCCceEEEEc
Confidence 77666665433 33445555544
No 274
>KOG2131 consensus Uncharacterized conserved protein, contains JmjC domain [Chromatin structure and dynamics; Signal transduction mechanisms]
Probab=22.66 E-value=77 Score=31.18 Aligned_cols=61 Identities=15% Similarity=0.157 Sum_probs=43.6
Q ss_pred EEEEec-CCCeeccc---ccccCCeeEEEEEeceEEEEEEccCCceEEEE------------------------EecCCc
Q 018395 226 DLVRLD-GKAMCSPG---FSCDSALQVTYIVRGSGRAQIVGPDGKRVLET------------------------TVKAGN 277 (356)
Q Consensus 226 ~~v~l~-~g~~~~PH---~h~~~A~ei~~v~~G~~~~~iv~~~g~~~~~~------------------------~l~~Gd 277 (356)
..+.+. .|+-.+-| || +..+...+-|+=+.=+..|.....+.. .=++|+
T Consensus 200 rFvy~Gp~gSwtp~HaDVf~---s~swS~nicG~KrWl~~pP~qe~~l~dr~gnlp~~~~~~~ld~~~~~~lei~Qepge 276 (427)
T KOG2131|consen 200 RFVYAGPAGSWTPFHADVFH---SPSWSVNICGRKRWLLYPPEQEQTLADRYGNLPLPSWITKLDLFRGPLLEIFQEPGE 276 (427)
T ss_pred eEEEeccCCCCCccchhhhc---CCcceeeeecceeEEEeChHHhhhhhhhccCcCCccccccccccccchhhhhccCCc
Confidence 345666 46666778 77 456999999999999999863111111 236999
Q ss_pred EEEEcCCcEEEE
Q 018395 278 LFIVPRFYVVSK 289 (356)
Q Consensus 278 v~vvP~g~~h~~ 289 (356)
++++|.||-|-.
T Consensus 277 ~VFvPsGW~hQV 288 (427)
T KOG2131|consen 277 TVFVPSGWHHQV 288 (427)
T ss_pred eeeccCcccccc
Confidence 999999998865
No 275
>COG2967 ApaG Uncharacterized protein affecting Mg2+/Co2+ transport [Inorganic ion transport and metabolism]
Probab=22.33 E-value=97 Score=25.45 Aligned_cols=24 Identities=21% Similarity=0.311 Sum_probs=20.2
Q ss_pred CcccCeee--CCCEEEEEEeCeEEEE
Q 018395 48 GFALPHYC--DSARVAYVLQGSGVAG 71 (356)
Q Consensus 48 ~~~~pH~h--~a~e~~yVl~G~~~~~ 71 (356)
.+..-||+ +++--.--++|.|.++
T Consensus 45 qLlsR~W~ITd~~g~v~eV~G~GVVG 70 (126)
T COG2967 45 QLLSRYWLITDGNGRVTEVEGEGVVG 70 (126)
T ss_pred eeeeeEEEEecCCCcEEEEEcCceec
Confidence 35678998 8888888999999986
No 276
>PF01356 A_amylase_inhib: Alpha amylase inhibitor; InterPro: IPR000833 Alpha-amylase inhibitor inhibits mammalian alpha-amylases specifically, by forming a tight stoichiometric 1:1 complex with alpha-amylase. The inhibitor has no action on plant and microbial alpha amylases. A crystal structure has been determined for tendamistat, the 74-amino acid inhibitor produced by Streptomyces tendae that targets a wide range of mammalian alpha-amylases []. The binding of tendamistat to alpha-amylase leads to the steric blockage of the active site of the enzyme. The crystal structure of tendamistat revealed an immunoglobulin-like fold that could potentially adopt multiple conformations. Such molecular flexibility could enable an induced-fit type of binding that would both optimise binding and allow broad target specificity. More information about this protein can be found at Protein of the Month: alpha-Amylase [].; GO: 0015066 alpha-amylase inhibitor activity; PDB: 2KER_A 3AIT_A 1BVN_T 1HOE_A 4AIT_A 2AIT_A 1OK0_A.
Probab=22.18 E-value=3.2e+02 Score=19.96 Aligned_cols=41 Identities=20% Similarity=0.290 Sum_probs=29.0
Q ss_pred CeeEEEEEec---eEEEEEEccCCceEEEEEecCCcEEEEcCCcE
Q 018395 245 ALQVTYIVRG---SGRAQIVGPDGKRVLETTVKAGNLFIVPRFYV 286 (356)
Q Consensus 245 A~ei~~v~~G---~~~~~iv~~~g~~~~~~~l~~Gdv~vvP~g~~ 286 (356)
.+....|.+| ...+.++-.+|+.+--..+.||++.-|| ||.
T Consensus 13 sWRYT~v~N~Ca~tvsVtV~Y~dG~~~PCrv~~PG~~~Tf~-Gyg 56 (68)
T PF01356_consen 13 SWRYTDVTNGCADTVSVTVEYTDGQEVPCRVIPPGDIATFP-GYG 56 (68)
T ss_dssp -SSEEEEEE-SSS-EEEEEEETTS-CEEEEEE-TTEEEEEE--TT
T ss_pred ceEEEEeeCCCcccEEEEEEEeCCCcceeEEeCCCCEEEec-ccc
Confidence 4567888888 3678888889987666689999999999 764
No 277
>PF10078 DUF2316: Uncharacterized protein conserved in bacteria (DUF2316); InterPro: IPR018757 Members of this family of hypothetical bacterial proteins have no known function.
Probab=22.04 E-value=86 Score=24.38 Aligned_cols=26 Identities=12% Similarity=0.270 Sum_probs=23.2
Q ss_pred cccCcHHHHHhhccCCHHHHHHhhcc
Q 018395 137 FTGFSTEFVSRAWDLDENTVKTLVGK 162 (356)
Q Consensus 137 l~~~~~~vl~~af~~~~~~~~~l~~~ 162 (356)
+++++.+-+|+.++++.+.+++++.=
T Consensus 21 ~~~ls~~~ia~dL~~s~~~le~vL~l 46 (89)
T PF10078_consen 21 LSGLSLEQIAADLGTSPEHLEQVLNL 46 (89)
T ss_pred HcCCCHHHHHHHhCCCHHHHHHHHcC
Confidence 45899999999999999999999853
No 278
>KOG0501 consensus K+-channel KCNQ [Inorganic ion transport and metabolism]
Probab=21.64 E-value=58 Score=34.04 Aligned_cols=62 Identities=23% Similarity=0.285 Sum_probs=43.4
Q ss_pred CcccCceEEEEEEecCCCcccCeee---CCCEEEEEEeCeEEEEEEcCCCceEEEEEcCCCEEEeCCCcEEEEEec
Q 018395 31 MLRQGNIGAAKLALEKNGFALPHYC---DSARVAYVLQGSGVAGIVLPEKEEKVVAIKKGDGIALPFGVVTWWYNK 103 (356)
Q Consensus 31 ~l~~~~~~~~~~~l~Pg~~~~pH~h---~a~e~~yVl~G~~~~~vv~~~~~~~~~~l~~GDv~~iP~G~~H~~~N~ 103 (356)
.|+..-|.+....-.||-+. || .-+.++||++|...+ +- +-+.+.-|.+|||| |-.+|-.|+
T Consensus 563 CLRaLAm~f~~~H~APGDLl---YHtGESvDaLcFvVsGSLEV--IQ--DDEVVAILGKGDVF----GD~FWK~~t 627 (971)
T KOG0501|consen 563 CLRALAMEFQTNHCAPGDLL---YHTGESVDALCFVVSGSLEV--IQ--DDEVVAILGKGDVF----GDEFWKENT 627 (971)
T ss_pred hHHHHHHHHHhccCCCccee---eecCCccceEEEEEecceEE--ee--cCcEEEEeecCccc----hhHHhhhhh
Confidence 44445555666677777643 55 557899999999876 32 23466899999998 777777764
No 279
>PTZ00490 Ferredoxin superfamily; Provisional
Probab=21.22 E-value=1.6e+02 Score=25.02 Aligned_cols=35 Identities=14% Similarity=0.168 Sum_probs=26.3
Q ss_pred CCCEEEEEEeCeEEEEEEcCCCceEEEEEcCCCEE
Q 018395 56 DSARVAYVLQGSGVAGIVLPEKEEKVVAIKKGDGI 90 (356)
Q Consensus 56 ~a~e~~yVl~G~~~~~vv~~~~~~~~~~l~~GDv~ 90 (356)
....-.++.+|+..+.+++++|...+.++.+|+.+
T Consensus 24 ~~~~~~~~~~g~v~I~~~~~dG~~~~v~~~~G~sL 58 (143)
T PTZ00490 24 STSRALYSTPGKVKVCVKKRDGTHCDVEVPVGMSL 58 (143)
T ss_pred eeeeeeccCCCcEEEEEEcCCCCEEEEEECCCccH
Confidence 34455667899999999998886666777777655
No 280
>COG0361 InfA Translation initiation factor 1 (IF-1) [Translation, ribosomal structure and biogenesis]
Probab=20.59 E-value=2.1e+02 Score=21.52 Aligned_cols=10 Identities=20% Similarity=0.600 Sum_probs=8.3
Q ss_pred EecCCcEEEE
Q 018395 272 TVKAGNLFIV 281 (356)
Q Consensus 272 ~l~~Gdv~vv 281 (356)
.+.+||++.|
T Consensus 46 ~I~~GD~V~V 55 (75)
T COG0361 46 RILPGDVVLV 55 (75)
T ss_pred EeCCCCEEEE
Confidence 6889998876
No 281
>TIGR00223 panD L-aspartate-alpha-decarboxylase. Members of this family are aspartate 1-decarboxylase, the enzyme that makes beta-alanine and C02 from aspartate. Beta-alanine is then used to make the vitamin pantothenate, from which coenzyme A is made. Aspartate 1-decarboxylase is synthesized as a proenzyme, then cleaved to an alpha (C-terminal) and beta (N-terminal) subunit with a pyruvoyl group.
Probab=20.54 E-value=43 Score=27.69 Aligned_cols=34 Identities=24% Similarity=0.503 Sum_probs=26.4
Q ss_pred EEEEEeceEEEEEEccCCceEEEEEecCCcEEEEcC
Q 018395 248 VTYIVRGSGRAQIVGPDGKRVLETTVKAGNLFIVPR 283 (356)
Q Consensus 248 i~~v~~G~~~~~iv~~~g~~~~~~~l~~Gdv~vvP~ 283 (356)
-.|++.|+.--+++|-||.. ....++||.++|=.
T Consensus 56 ~TYvI~G~~GSg~I~lNGAA--Arl~~~GD~VII~s 89 (126)
T TIGR00223 56 STYAIAGKRGSRIICVNGAA--ARCVSVGDIVIIAS 89 (126)
T ss_pred EEEEEEcCCCCCEEEeCCHH--HhcCCCCCEEEEEE
Confidence 46999998878888888843 23588999998754
No 282
>PRK14533 groES co-chaperonin GroES; Provisional
Probab=20.24 E-value=3.5e+02 Score=21.01 Aligned_cols=20 Identities=15% Similarity=0.311 Sum_probs=15.3
Q ss_pred EEEecCCcEEEEcCCcEEEE
Q 018395 270 ETTVKAGNLFIVPRFYVVSK 289 (356)
Q Consensus 270 ~~~l~~Gdv~vvP~g~~h~~ 289 (356)
.-.++.||.+++|+...--+
T Consensus 51 ~~~Vk~GD~Vl~~~y~g~ev 70 (91)
T PRK14533 51 DFDIKVGDKVIFSKYAGTEI 70 (91)
T ss_pred cccccCCCEEEEccCCCeEE
Confidence 34699999999998765444
No 283
>PHA02699 hypothetical protein; Provisional
Probab=20.10 E-value=3.1e+02 Score=27.05 Aligned_cols=98 Identities=14% Similarity=0.230 Sum_probs=0.0
Q ss_pred cccCCeeEEEEEeceEEEEEEccCCceEEEEEecCCcEEEEcCCcEEEEeeC-CCCeEEEEEEcCCCCceeccccccccc
Q 018395 241 SCDSALQVTYIVRGSGRAQIVGPDGKRVLETTVKAGNLFIVPRFYVVSKIAD-PDGLAWFSIITTPNPIFTHLAGSIGTW 319 (356)
Q Consensus 241 h~~~A~ei~~v~~G~~~~~iv~~~g~~~~~~~l~~Gdv~vvP~g~~h~~~~~-~~~~~~~~~~~~~~p~~~~laG~~s~l 319 (356)
+.. +-...+|++-+|+.++.=++ .......++.||.+|+|......+.-. -..+.|+.+.-.....+..+. ..++
T Consensus 164 ~sa-gFvAtICIKNeGiSgI~Vp~-T~~lktnmqeGD~IVsRSsRGI~FLPQIGGeAiYLIVsL~PTkkL~dlG--feVf 239 (466)
T PHA02699 164 DMA-AFVAIICIKNEGMAAIAVNN-TKFLKTNIQEGDAIVFPAARGMFFLPHIGGDAEYIILTLTPTADLLDLG--FDVF 239 (466)
T ss_pred ccc-ceEEEEEEcCCCeeEEEecC-CcceeeeeecCCEEEEehhchhhhhhhcCCceEEEEEEEechHHHHhcC--cccC
Q ss_pred c-CCCHHHHHHHcCCCHHHHHHHH
Q 018395 320 K-SLSPSVLEAAFNVPSDVEKQFR 342 (356)
Q Consensus 320 ~-~~p~~vl~~af~~~~~~~~~l~ 342 (356)
. +++.+..-++..+.+.--+.++
T Consensus 240 ~ps~~QdA~~~t~~vAerR~ka~~ 263 (466)
T PHA02699 240 PPSIDQDAQILTANAAETRKKACK 263 (466)
T ss_pred CCCcCchHHHHHHHHHHHHHHHHH
No 284
>PRK05449 aspartate alpha-decarboxylase; Provisional
Probab=20.01 E-value=46 Score=27.57 Aligned_cols=34 Identities=24% Similarity=0.509 Sum_probs=26.5
Q ss_pred EEEEEeceEEEEEEccCCceEEEEEecCCcEEEEcC
Q 018395 248 VTYIVRGSGRAQIVGPDGKRVLETTVKAGNLFIVPR 283 (356)
Q Consensus 248 i~~v~~G~~~~~iv~~~g~~~~~~~l~~Gdv~vvP~ 283 (356)
-.|++.|+.--+++|-||.. ....++||.++|=.
T Consensus 56 ~TYvI~g~~GSg~I~lNGAA--Ar~~~~GD~vII~a 89 (126)
T PRK05449 56 ETYVIAGERGSGVICLNGAA--ARLVQVGDLVIIAA 89 (126)
T ss_pred EEEEEEcCCCCCEEEeCCHH--HhcCCCCCEEEEEE
Confidence 46999998878888889843 23588999998754
Done!