BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 018397
(356 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2A2D|A Chain A, X-Ray Structure Of Human N-Acetyl Galactosamine Kinase
Complexed With Mn-Amppnp And N-Acetyl Glactosamine
pdb|2A2C|A Chain A, X-Ray Structure Of Human N-Acetyl Galactosamine Kinase
Complexed With Mg-Adp And N-Acetyl Galactosamine 1-
Phosphate
Length = 478
Score = 215 bits (548), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 135/329 (41%), Positives = 193/329 (58%), Gaps = 36/329 (10%)
Query: 34 AFVCSSTVALMAAFGVEVPKKEIAQLTCECEQFIGTQSGGMDQAISIMAKSGFAELIDFN 93
A VC + + + G + K E+A++ + E++IGT+ GGMDQ+IS +A+ G A+LI+F+
Sbjct: 169 ALVCCAGLVTLTVLGRNLSKVELAEICAKSERYIGTEGGGMDQSISFLAEEGTAKLIEFS 228
Query: 94 PIRTTDVQLPAGGTFVVAHSLAESLKAITAASNYNNRVVECRLTAIVLAIKLGMKPQEAI 153
P+R TDV+LP+G FV+A+S E KA A S++N RV+ECRL A +LA ++
Sbjct: 229 PLRATDVKLPSGAVFVIANSCVEMNKA--ATSHFNIRVMECRLAAKLLAKYKSLQ----W 282
Query: 154 SKVKTLSDVEGLCVAFACKNG-SSDPVFAV------KEPYTALDIEKIT----EEKLTSI 202
KV L +V+ K G S + + V EPY +I + EE T I
Sbjct: 283 DKVLRLEEVQA-------KLGISLEEMLLVTEDALHPEPYNPEEICRCLGISLEELRTQI 335
Query: 203 FANSSSSLDVLNAAKQYKLHQRAAHVYSEAKRVHAFKDTVSSNLSEEDKLKKLGDLMNDS 262
S ++ DVL +KL+QRA HVYSEA RV FK + E+ ++ LG+LMN S
Sbjct: 336 L--SPNTQDVL----IFKLYQRAKHVYSEAARVLQFKKICEE--APENMVQLLGELMNQS 387
Query: 263 HHSCSVLYECSCPELEELVNVCRNNGALGARLTGAGWGGCVVALVKESIDSQFILNLKEQ 322
H SC +YECSCPEL++LV++CR GA G+RLTGAGWGGC V++V F+ N+ +
Sbjct: 388 HMSCRDMYECSCPELDQLVDICRKFGAQGSRLTGAGWGGCTVSMVPADKLPSFLANVHKA 447
Query: 323 FYQSRIDRGVINNNDLGLYVFASKPSSGA 351
+YQ R D + +FA+KP GA
Sbjct: 448 YYQ-RSDGSLAPEKQ---SLFATKPGGGA 472
>pdb|2AJ4|A Chain A, Crystal Structure Of Saccharomyces Cerevisiae
Galactokinase In Complex With Galactose And Mg:amppnp
pdb|2AJ4|B Chain B, Crystal Structure Of Saccharomyces Cerevisiae
Galactokinase In Complex With Galactose And Mg:amppnp
Length = 548
Score = 149 bits (377), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 124/369 (33%), Positives = 188/369 (50%), Gaps = 59/369 (15%)
Query: 34 AFVCSSTVALMAA---FGVEVPKKEIAQLTCECEQFIGTQSGGMDQAISIMAKSGFAELI 90
AF+C+ +A++ A G + K+ + ++T E ++G +GGMDQA S+ + A +
Sbjct: 193 AFICAVALAVVKANMGPGYHMSKQNLMRITVVAEHYVGVNNGGMDQAASVCGEEDHALYV 252
Query: 91 DFNP-IRTTDVQLPAGG----TFVVAHSLAESLKAITAASNYNNRVVECRLTAIVLAIKL 145
+F P ++ T + P +FV+A++L S K TA +NYN RVVE A VLA
Sbjct: 253 EFKPQLKATPFKFPQLKNHEISFVIANTLVVSNKFETAPTNYNLRVVEVTTAANVLAATY 312
Query: 146 G---MKPQEAISKVK-TLSDVEGLCVAFACKNGSSDPVFAVKEPYTALDIEKIT------ 195
G + +E S K L D + V +A + S P E IE++T
Sbjct: 313 GVVLLSGKEGSSTNKGNLRDF--MNVYYARYHNISTPWNGDIES----GIERLTKMLVLV 366
Query: 196 EEKLTSIFANSSSSLDV------LNAAKQ----------------YKLHQRAAHVYSEAK 233
EE L AN V LN +++ KL+QRA HVYSE+
Sbjct: 367 EESL----ANKKQGFSVDDVAQSLNCSREEFTRDYLTTSPVRFQVLKLYQRAKHVYSESL 422
Query: 234 RV-HAFK-DTVSSNLSEEDKLKKLGDLMNDSHHSCSVLYECSCPELEELVNVCRNNGALG 291
RV A K T +S ++ED K+ G LMN+S SC LYECSCPE++++ ++ +NG+ G
Sbjct: 423 RVLKAVKLMTTASFTADEDFFKQFGALMNESQASCDKLYECSCPEIDKICSIALSNGSYG 482
Query: 292 ARLTGAGWGGCVVALVKESIDSQFILNLKE----QFYQSRIDRGVINNNDLGLYVFASKP 347
+RLTGAGWGGC V LV + I +KE +FY+ + + I + +L + SKP
Sbjct: 483 SRLTGAGWGGCTVHLVPGGPNGN-IEKVKEALANEFYKVKYPK--ITDAELENAIIVSKP 539
Query: 348 SSGAAKFKF 356
+ G+ ++
Sbjct: 540 ALGSCLYEL 548
>pdb|3V5R|A Chain A, Crystal Structure Of The Unliganded Form Of Gal3p
pdb|3V5R|B Chain B, Crystal Structure Of The Unliganded Form Of Gal3p
Length = 505
Score = 144 bits (364), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 114/365 (31%), Positives = 173/365 (47%), Gaps = 61/365 (16%)
Query: 33 TAFVCSSTVALMAAF---GVEVPKKEIAQLTCECEQFIGTQSGGMDQAISIMAKSGFAEL 89
+AF C++ +A + A ++ KK++ ++T E ++G +GGMDQA S+ + A
Sbjct: 149 SAFTCAAALATIRANMGKNFDISKKDLTRITAVAEHYVGVNNGGMDQATSVYGEEDHALY 208
Query: 90 IDFNP-IRTTDVQLPAGG----TFVVAHSLAESLKAITAASNYNNRVVECRLTAIVLAIK 144
++F P ++ T + P +FV+A++L +S K TA +NYN RV+E + A LA +
Sbjct: 209 VEFRPKLKATPFKFPQLKNHEISFVIANTLVKSNKFETAPTNYNLRVIEVTVAANALATR 268
Query: 145 ----LGMKPQEAISKVKTLSDVEGLCVAFACKNGSSDPV--------------------- 179
L + S+ L D + +A + P
Sbjct: 269 YSVALPSHKDNSNSERGNLRDF--MDAYYARYENQAQPWNGDIGTGIERLLKMLQLVEES 326
Query: 180 -------FAVKEPYTALDI--EKITEEKLTSIFANSSSSLDVLNAAKQYKLHQRAAHVYS 230
F V E TAL+ E+ T + LT+ VL KL+QRA HVYS
Sbjct: 327 FSRKKSGFTVHEASTALNCSREEFTRDYLTTF----PVRFQVL------KLYQRAKHVYS 376
Query: 231 EAKRV-HAFKDTVSSNL-SEEDKLKKLGDLMNDSHHSCSVLYECSCPELEELVNVCRNNG 288
E+ RV A K S+ ++ED G LMN+S SC LYECSC E ++ ++ NG
Sbjct: 377 ESLRVLKALKMMTSATFHTDEDFFTDFGRLMNESQASCDKLYECSCIETNQICSIALANG 436
Query: 289 ALGARLTGAGWGGCVVALVKESID---SQFILNLKEQFYQSRIDRGVINNNDLGLYVFAS 345
+ G+RLTGAGWGGC + LV + Q L E+FY R + + +L + S
Sbjct: 437 SFGSRLTGAGWGGCTIHLVPSGANGNVEQVRKALIEKFYNVRYPD--LTDEELKDAIIVS 494
Query: 346 KPSSG 350
KP+ G
Sbjct: 495 KPALG 499
>pdb|3V2U|C Chain C, Crystal Structure Of The Yeast Gal Regulon Complex Of The
Repressor, Gal80p, And The Transducer, Gal3p, With
Galactose And Atp
pdb|3V2U|D Chain D, Crystal Structure Of The Yeast Gal Regulon Complex Of The
Repressor, Gal80p, And The Transducer, Gal3p, With
Galactose And Atp
Length = 520
Score = 144 bits (364), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 114/365 (31%), Positives = 173/365 (47%), Gaps = 61/365 (16%)
Query: 33 TAFVCSSTVALMAAF---GVEVPKKEIAQLTCECEQFIGTQSGGMDQAISIMAKSGFAEL 89
+AF C++ +A + A ++ KK++ ++T E ++G +GGMDQA S+ + A
Sbjct: 164 SAFTCAAALATIRANMGKNFDISKKDLTRITAVAEHYVGVNNGGMDQATSVYGEEDHALY 223
Query: 90 IDFNP-IRTTDVQLPAGG----TFVVAHSLAESLKAITAASNYNNRVVECRLTAIVLAIK 144
++F P ++ T + P +FV+A++L +S K TA +NYN RV+E + A LA +
Sbjct: 224 VEFRPKLKATPFKFPQLKNHEISFVIANTLVKSNKFETAPTNYNLRVIEVTVAANALATR 283
Query: 145 ----LGMKPQEAISKVKTLSDVEGLCVAFACKNGSSDPV--------------------- 179
L + S+ L D + +A + P
Sbjct: 284 YSVALPSHKDNSNSERGNLRDF--MDAYYARYENQAQPWNGDIGTGIERLLKMLQLVEES 341
Query: 180 -------FAVKEPYTALDI--EKITEEKLTSIFANSSSSLDVLNAAKQYKLHQRAAHVYS 230
F V E TAL+ E+ T + LT+ VL KL+QRA HVYS
Sbjct: 342 FSRKKSGFTVHEASTALNCSREEFTRDYLTTF----PVRFQVL------KLYQRAKHVYS 391
Query: 231 EAKRV-HAFKDTVSSNL-SEEDKLKKLGDLMNDSHHSCSVLYECSCPELEELVNVCRNNG 288
E+ RV A K S+ ++ED G LMN+S SC LYECSC E ++ ++ NG
Sbjct: 392 ESLRVLKALKMMTSATFHTDEDFFTDFGRLMNESQASCDKLYECSCIETNQICSIALANG 451
Query: 289 ALGARLTGAGWGGCVVALVKESID---SQFILNLKEQFYQSRIDRGVINNNDLGLYVFAS 345
+ G+RLTGAGWGGC + LV + Q L E+FY R + + +L + S
Sbjct: 452 SFGSRLTGAGWGGCTIHLVPSGANGNVEQVRKALIEKFYNVRYPD--LTDEELKDAIIVS 509
Query: 346 KPSSG 350
KP+ G
Sbjct: 510 KPALG 514
>pdb|1PIE|A Chain A, Crystal Structure Of Lactococcus Lactis Galactokinase
Complexed With Galactose
Length = 419
Score = 65.5 bits (158), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 80/276 (28%), Positives = 116/276 (42%), Gaps = 74/276 (26%)
Query: 41 VALMAAFGVEVPKKEIAQLTCECEQ-FIGTQSGGMDQ-AISIMAKSGFAEL-----IDFN 93
V L F + VP+ E+ QL + E +IG SG +DQ AI GF E+ +D N
Sbjct: 168 VVLDDLFNLNVPRLELVQLGQKTENDYIGVNSGILDQFAI------GFGEVKKAIELDCN 221
Query: 94 PIRTTDVQLPAGGTFVVAHSLAESLKAITAASNYNNRVVECRLTAIVLAIKLGMKPQEAI 153
++ V + +V + + +A+T S YN R E R EA+
Sbjct: 222 TLKYEMVPVELRDYDIVIMNTNKP-RALTE-SKYNERFAETR---------------EAL 264
Query: 154 SKVKTLSDVEGLCVAFACKNGSSDPVFAVKEPYTALDIEKITEEKLTSIFANSSSSLDVL 213
+++T LDI+ + E AN+ D++
Sbjct: 265 KRMQT-----------------------------RLDIQSLGELSNEEFDANT----DLI 291
Query: 214 NAAKQYKLHQRAAHVYSEAKRVH-AFKDTVSSNLSEEDKLKKLGDLMNDSHHSCSVLYEC 272
L +RA H E R A K V+ NL+ K G+L+N SH S YE
Sbjct: 292 GDET---LIKRARHAVYENNRTKIAQKAFVAGNLT------KFGELLNASHASLKDDYEV 342
Query: 273 SCPELEELVNVCRNN-GALGARLTGAGWGGCVVALV 307
+ EL+ L + G LGAR+TGAG+GGC +ALV
Sbjct: 343 TGLELDTLAETAQKQAGVLGARMTGAGFGGCAIALV 378
>pdb|2HFU|A Chain A, Crystal Structure Of L. Major Mevalonate Kinase In Complex
With R-Mevalonate
pdb|2HFU|B Chain B, Crystal Structure Of L. Major Mevalonate Kinase In Complex
With R-Mevalonate
Length = 332
Score = 62.4 bits (150), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 41/117 (35%), Positives = 62/117 (52%), Gaps = 18/117 (15%)
Query: 200 TSIFANSSSSLDVLNAAKQY------KLHQRAAHVYSEAKRVHAFKDTVSSNLSEEDKLK 253
T I A+++ ++ ++ KQ +L+ H+ S+A+ L + D L+
Sbjct: 195 TGINASTAKVVNDVHKMKQQQPVQFKRLYDNYTHIVSQAREA----------LQKGD-LQ 243
Query: 254 KLGDLMNDSHHSCSVLYECSCPELEELVNVCRNNGALGARLTGAGWGGCVVALVKES 310
+LG LMN +H C + + SC ELE +V CR GALGA+L+G G GG VAL S
Sbjct: 244 RLGQLMNANHDLCRQI-DVSCRELESIVQTCRTYGALGAKLSGTGRGGIAVALAASS 299
>pdb|1S4E|A Chain A, Pyrococcus Furiosus Galactokinase In Complex With
Galactose, Adp And Magnesium
pdb|1S4E|B Chain B, Pyrococcus Furiosus Galactokinase In Complex With
Galactose, Adp And Magnesium
pdb|1S4E|C Chain C, Pyrococcus Furiosus Galactokinase In Complex With
Galactose, Adp And Magnesium
pdb|1S4E|D Chain D, Pyrococcus Furiosus Galactokinase In Complex With
Galactose, Adp And Magnesium
pdb|1S4E|E Chain E, Pyrococcus Furiosus Galactokinase In Complex With
Galactose, Adp And Magnesium
pdb|1S4E|F Chain F, Pyrococcus Furiosus Galactokinase In Complex With
Galactose, Adp And Magnesium
pdb|1S4E|G Chain G, Pyrococcus Furiosus Galactokinase In Complex With
Galactose, Adp And Magnesium
pdb|1S4E|H Chain H, Pyrococcus Furiosus Galactokinase In Complex With
Galactose, Adp And Magnesium
pdb|1S4E|I Chain I, Pyrococcus Furiosus Galactokinase In Complex With
Galactose, Adp And Magnesium
Length = 352
Score = 60.8 bits (146), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 38/117 (32%), Positives = 61/117 (52%), Gaps = 6/117 (5%)
Query: 192 EKITEEKLTSIFANSSSSLDVLNAAKQYKLHQRA-AHVYSEAKRVHAFKDTVSSNLSEED 250
++I EE L + SS + + K LH++ +++ E RV +D + +E
Sbjct: 204 KRIAEESLRILGKESSKEVTEKDLGKLPPLHRKFFSYIVRENARVLEVRDAL-----KEG 258
Query: 251 KLKKLGDLMNDSHHSCSVLYECSCPELEELVNVCRNNGALGARLTGAGWGGCVVALV 307
++K+G ++ +H + Y SC EL+ V GA GARLTGAG+GG +ALV
Sbjct: 259 DIEKVGKILTTAHWDLAENYRVSCEELDFFVKKAXELGAYGARLTGAGFGGSAIALV 315
>pdb|2HFS|A Chain A, Crystal Structure Of L. Major Mevalonate Kinase
pdb|2HFS|B Chain B, Crystal Structure Of L. Major Mevalonate Kinase
Length = 332
Score = 59.7 bits (143), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 40/117 (34%), Positives = 61/117 (52%), Gaps = 18/117 (15%)
Query: 200 TSIFANSSSSLDVLNAAKQY------KLHQRAAHVYSEAKRVHAFKDTVSSNLSEEDKLK 253
T I A+++ ++ ++ KQ +L+ H+ S+A+ L + D L+
Sbjct: 195 TGINASTAKVVNDVHKXKQQQPVQFKRLYDNYTHIVSQAREA----------LQKGD-LQ 243
Query: 254 KLGDLMNDSHHSCSVLYECSCPELEELVNVCRNNGALGARLTGAGWGGCVVALVKES 310
+LG L N +H C + + SC ELE +V CR GALGA+L+G G GG VAL S
Sbjct: 244 RLGQLXNANHDLCRQI-DVSCRELESIVQTCRTYGALGAKLSGTGRGGIAVALAASS 299
>pdb|2CZ9|A Chain A, Crystal Structure Of Galactokinase From Pyrococcus
Horikoshi
pdb|2DEI|A Chain A, Crystal Structure Of Galaktokinase From Pyrococcus
Horikoshii With Amp-Pnp And Galactose
pdb|2DEJ|A Chain A, Crystal Structure Of Galaktokinase From Pyrococcus
Horikoshii With Amp-Pn And Galactose
Length = 350
Score = 57.8 bits (138), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 38/115 (33%), Positives = 59/115 (51%), Gaps = 6/115 (5%)
Query: 194 ITEEKLTSIFANSSSSLDVLNAAKQYKLHQRA-AHVYSEAKRVHAFKDTVSSNLSEEDKL 252
I EE L + SS + +K LH++ ++ E RV +D + +E +
Sbjct: 204 IAEESLKILGKGSSKEVREGELSKLPPLHRKFFGYIVRENARVLEVRDAL-----KEGNV 258
Query: 253 KKLGDLMNDSHHSCSVLYECSCPELEELVNVCRNNGALGARLTGAGWGGCVVALV 307
+++G ++ +H + YE SC EL+ V GA GARLTGAG+GG +ALV
Sbjct: 259 EEVGKILTTAHWDLAKNYEVSCKELDFFVERALKLGAYGARLTGAGFGGSAIALV 313
>pdb|2X7I|A Chain A, Crystal Structure Of Mevalonate Kinase From Methicillin-
Resistant Staphylococcus Aureus Mrsa252
Length = 308
Score = 46.2 bits (108), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 40/67 (59%), Gaps = 1/67 (1%)
Query: 243 SSNLSEEDKLKKLGDLMNDSHHSCSVLYECSCPELEELVNVCRNNGALGARLTGAGWGGC 302
+S++ E K + L D+ N+ H L S ++E+L+ + + NGA+ +LTGAG GG
Sbjct: 217 ASDVIEHHKFEALADIFNECHADLKAL-TVSHDKIEQLMKIGKENGAIAGKLTGAGRGGS 275
Query: 303 VVALVKE 309
++ L K+
Sbjct: 276 MLLLAKD 282
>pdb|1VIS|A Chain A, Crystal Structure Of Mevalonate Kinase
Length = 324
Score = 43.9 bits (102), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 31/95 (32%), Positives = 49/95 (51%), Gaps = 10/95 (10%)
Query: 220 KLHQRAAHVYSEAKRVH----AFKDTVSSNLSEEDKLKK---LGDLMNDSHHSCSVLYEC 272
K ++ A + +E ++ FK+ + + E K+K G LM +H L
Sbjct: 197 KRKKKTAELVNEVAKIENKDEIFKE-IDKVIDEALKIKNKEDFGKLMTKNHELLKKL-NI 254
Query: 273 SCPELEELVNVCRNNGALGARLTGAGWGGCVVALV 307
S P+L+ +V++ N GA+LTGAG GGCV+ LV
Sbjct: 255 STPKLDRIVDIG-NRFGFGAKLTGAGGGGCVIILV 288
>pdb|1KKH|A Chain A, Crystal Structure Of The Methanococcus Jannaschii
Mevalonate Kinase
Length = 317
Score = 43.9 bits (102), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 31/95 (32%), Positives = 49/95 (51%), Gaps = 10/95 (10%)
Query: 220 KLHQRAAHVYSEAKRVH----AFKDTVSSNLSEEDKLKK---LGDLMNDSHHSCSVLYEC 272
K ++ A + +E ++ FK+ + + E K+K G LM +H L
Sbjct: 200 KRKKKTAELVNEVAKIENKDEIFKE-IDKVIDEALKIKNKEDFGKLMTKNHELLKKL-NI 257
Query: 273 SCPELEELVNVCRNNGALGARLTGAGWGGCVVALV 307
S P+L+ +V++ N GA+LTGAG GGCV+ LV
Sbjct: 258 STPKLDRIVDIG-NRFGFGAKLTGAGGGGCVIILV 291
>pdb|2OI2|A Chain A, Streptococcus Pneumoniae Mevalonate Kinase In Complex With
Diphosphomevalonate
Length = 292
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 41/69 (59%), Gaps = 2/69 (2%)
Query: 246 LSEEDKLKKLGDLMNDSHHSCSVLYECSCPELEELVNVCRNNGALGARLTGAGWGGCVVA 305
+S++D + LG +++ +H + S E + LV ++GALGA+++G G GGC++A
Sbjct: 207 ISQKDA-EGLGQILSQAHLHLKEI-GVSSLEADSLVETALSHGALGAKMSGGGLGGCIIA 264
Query: 306 LVKESIDSQ 314
LV +Q
Sbjct: 265 LVTNLTHAQ 273
>pdb|1WUU|A Chain A, Crystal Structure Of Human Galactokinase Complexed With
Mgamppnp And Galactose
pdb|1WUU|B Chain B, Crystal Structure Of Human Galactokinase Complexed With
Mgamppnp And Galactose
pdb|1WUU|C Chain C, Crystal Structure Of Human Galactokinase Complexed With
Mgamppnp And Galactose
pdb|1WUU|D Chain D, Crystal Structure Of Human Galactokinase Complexed With
Mgamppnp And Galactose
Length = 399
Score = 35.4 bits (80), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 30/60 (50%), Gaps = 5/60 (8%)
Query: 223 QRAAHVYSEAKRVHAFKDTVSSNLSEEDKLKKLGDLMNDSHHSCSVLYECSCPELEELVN 282
+RA HV E +R ++ L D + G L +SH S YE SCPEL++LV
Sbjct: 283 RRARHVVGEIRRT----AQAAAALRRGD-YRAFGRLXVESHRSLRDDYEVSCPELDQLVE 337
Score = 30.0 bits (66), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 37/85 (43%), Gaps = 10/85 (11%)
Query: 63 CEQ----FIGTQSGGMDQAISIMAKSGFAELIDFNPIRTTDVQL--PAGGTFVVAHSLAE 116
C+Q F G G DQ IS+ + G A LID + T+ V L P + ++
Sbjct: 177 CQQAEHSFAGXPCGIXDQFISLXGQKGHALLIDCRSLETSLVPLSDPKLAVLITNSNVRH 236
Query: 117 SLKAITAASNYNNRVVECRLTAIVL 141
SL A+S Y R +C A L
Sbjct: 237 SL----ASSEYPVRRRQCEEVARAL 257
>pdb|4HTE|A Chain A, Crystal Structure Of The C-terminal Domain Of Nicking
Enzyme From Staphylococcus Aureus
Length = 353
Score = 31.2 bits (69), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 17/56 (30%), Positives = 29/56 (51%)
Query: 203 FANSSSSLDVLNAAKQYKLHQRAAHVYSEAKRVHAFKDTVSSNLSEEDKLKKLGDL 258
+ N S S + N AK K++ + Y E +R++ K S +ED+L K+ D+
Sbjct: 19 YXNKSDSTTLKNXAKDLKIYVTPINXYKENERLYDLKQKTSLITDDEDRLNKIEDI 74
>pdb|4F99|A Chain A, Human Cdc7 Kinase In Complex With Dbf4 And Nucleotide
pdb|4F9A|A Chain A, Human Cdc7 Kinase In Complex With Dbf4 And Nucleotide
pdb|4F9A|C Chain C, Human Cdc7 Kinase In Complex With Dbf4 And Nucleotide
pdb|4F9B|A Chain A, Human Cdc7 Kinase In Complex With Dbf4 And Pha767491
pdb|4F9B|C Chain C, Human Cdc7 Kinase In Complex With Dbf4 And Pha767491
pdb|4F9C|A Chain A, Human Cdc7 Kinase In Complex With Dbf4 And Xl413
Length = 361
Score = 29.6 bits (65), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 35/155 (22%), Positives = 67/155 (43%), Gaps = 24/155 (15%)
Query: 114 LAESLKAITAASNYNNRVVECRLTAIVLAI-KLGMKPQEAIS---------KVKTLSDVE 163
L E++ ++ +++ E +++ LA +L + P+E I+ ++ ++++
Sbjct: 12 LYEAVPQLSNVFKIEDKIGEGTFSSVYLATAQLQVGPEEKIALKHLIPTSHPIRIAAELQ 71
Query: 164 GLCVAFACKNGSSDPVFAVKEPYTALDIEKITEEKLTSIFANSSSSLDVLNAAKQYKLHQ 223
L VA G D V VK + D I L S LD+LN+ ++ +
Sbjct: 72 CLTVA-----GGQDNVMGVKYCFRKNDHVVIAMPYL-----EHESFLDILNSLSFQEVRE 121
Query: 224 RAAHVYSEAKRVHAF----KDTVSSNLSEEDKLKK 254
+++ KR+H F +D SN +LKK
Sbjct: 122 YMLNLFKALKRIHQFGIVHRDVKPSNFLYNRRLKK 156
>pdb|3F9I|A Chain A, Crystal Structure Of 3-Ketoacyl-(Acyl-Carrier-Protein)
Reductase Rickettsia Prowazekii
pdb|3F9I|B Chain B, Crystal Structure Of 3-Ketoacyl-(Acyl-Carrier-Protein)
Reductase Rickettsia Prowazekii
Length = 249
Score = 28.5 bits (62), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 25/98 (25%), Positives = 42/98 (42%), Gaps = 6/98 (6%)
Query: 232 AKRVHAFKDTVSSNLSEEDKLKKLGDLMNDSHHSCSVLYECSCPELEELVNVCRNNGALG 291
A+ +H V + S E+KLK LG+ + D++ + C+ EE N+ L
Sbjct: 31 ARLLHKLGSKVIISGSNEEKLKSLGNALKDNY----TIEVCNLANKEECSNLISKTSNLD 86
Query: 292 ARLTGAGWGGCVVA--LVKESIDSQFILNLKEQFYQSR 327
+ AG +A + + D +NLK F +R
Sbjct: 87 ILVCNAGITSDTLAIRMKDQDFDKVIDINLKANFILNR 124
>pdb|3TCM|A Chain A, Crystal Structure Of Alanine Aminotransferase From Hordeum
Vulgare
pdb|3TCM|B Chain B, Crystal Structure Of Alanine Aminotransferase From Hordeum
Vulgare
Length = 500
Score = 28.1 bits (61), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 32/150 (21%), Positives = 60/150 (40%), Gaps = 16/150 (10%)
Query: 116 ESLKAITAASNYNNRVVECRLTAIVLAIKLGMKPQEAISKVKTLSDVEGLCVAFACKNGS 175
+ + A A N N +V++C + + QE ++KT C G+
Sbjct: 17 DKMAATVAVDNLNPKVLKCEYAVRGEIVIHAQRLQE---QLKTQPGSLPFDEILYCNIGN 73
Query: 176 SD-----PVFAVKEPYTALDIEKITE-EKLTSIFANSSSSLDVLNAAKQY--KLHQRAAH 227
PV +E D + + E++ ++F S D ++ AKQ + RA
Sbjct: 74 PQSLGQQPVTFFREVLALCDHPDLLQREEIKTLF-----SADSISRAKQILAMIPGRATG 128
Query: 228 VYSEAKRVHAFKDTVSSNLSEEDKLKKLGD 257
YS ++ +H +D ++S ++ D D
Sbjct: 129 AYSHSQGIHGLRDAIASGIASRDGFPANAD 158
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.131 0.373
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,137,806
Number of Sequences: 62578
Number of extensions: 340388
Number of successful extensions: 945
Number of sequences better than 100.0: 22
Number of HSP's better than 100.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 910
Number of HSP's gapped (non-prelim): 27
length of query: 356
length of database: 14,973,337
effective HSP length: 100
effective length of query: 256
effective length of database: 8,715,537
effective search space: 2231177472
effective search space used: 2231177472
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 52 (24.6 bits)