Query 018397
Match_columns 356
No_of_seqs 152 out of 1411
Neff 7.7
Searched_HMMs 46136
Date Fri Mar 29 08:40:45 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018397.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/018397hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02521 galactokinase 100.0 4E-60 8.6E-65 474.7 33.5 344 13-356 148-496 (497)
2 COG0153 GalK Galactokinase [Ca 100.0 4.6E-59 9.9E-64 442.1 30.3 284 2-354 100-389 (390)
3 PLN02865 galactokinase 100.0 3.5E-53 7.6E-58 416.2 32.3 284 13-354 129-423 (423)
4 PTZ00290 galactokinase; Provis 100.0 4.8E-53 1E-57 419.0 31.2 296 13-356 133-458 (468)
5 PRK05322 galactokinase; Provis 100.0 5E-50 1.1E-54 393.4 31.4 274 13-354 111-387 (387)
6 PRK05101 galactokinase; Provis 100.0 5E-50 1.1E-54 393.0 31.0 268 13-353 111-381 (382)
7 PRK00555 galactokinase; Provis 100.0 1.4E-48 3E-53 380.2 30.3 270 12-354 89-362 (363)
8 TIGR00131 gal_kin galactokinas 100.0 2.1E-48 4.5E-53 382.7 29.0 274 13-353 109-385 (386)
9 PRK03817 galactokinase; Provis 100.0 4.5E-43 9.7E-48 340.9 30.2 267 12-355 84-351 (351)
10 KOG0631 Galactokinase [Carbohy 100.0 3.8E-44 8.2E-49 345.6 19.2 338 13-356 141-489 (489)
11 PLN02677 mevalonate kinase 100.0 2.8E-32 6.1E-37 266.1 27.2 236 12-354 127-382 (387)
12 COG1577 ERG12 Mevalonate kinas 100.0 1.2E-31 2.7E-36 252.6 22.8 215 12-327 81-296 (307)
13 PTZ00298 mevalonate kinase; Pr 100.0 4.8E-31 1E-35 254.2 27.3 219 13-328 93-315 (328)
14 COG2605 Predicted kinase relat 100.0 1.5E-30 3.2E-35 237.1 23.5 212 15-321 90-312 (333)
15 TIGR00549 mevalon_kin mevalona 100.0 4.8E-30 1E-34 241.1 23.4 195 14-306 78-273 (273)
16 KOG1511 Mevalonate kinase MVK/ 100.0 2E-29 4.4E-34 234.3 20.9 242 7-355 120-381 (397)
17 PRK03926 mevalonate kinase; Pr 100.0 8.2E-29 1.8E-33 236.1 25.8 225 13-355 74-300 (302)
18 TIGR01220 Pmev_kin_Gr_pos phos 100.0 8.8E-29 1.9E-33 240.9 23.9 218 12-328 98-347 (358)
19 PRK13412 fkp bifunctional fuco 100.0 2.5E-28 5.4E-33 257.6 26.0 213 13-321 725-950 (974)
20 PLN02451 homoserine kinase 99.9 1.4E-24 3.1E-29 211.6 26.3 225 13-355 133-366 (370)
21 COG0083 ThrB Homoserine kinase 99.9 2.3E-23 4.9E-28 194.8 24.7 218 14-355 77-298 (299)
22 PRK01212 homoserine kinase; Pr 99.9 4.2E-23 9.1E-28 196.8 25.0 219 13-354 80-301 (301)
23 TIGR00191 thrB homoserine kina 99.9 3.9E-22 8.4E-27 190.3 23.3 216 13-353 79-301 (302)
24 PTZ00299 homoserine kinase; Pr 99.9 1.2E-21 2.6E-26 188.3 21.9 221 13-355 81-323 (336)
25 PRK03188 4-diphosphocytidyl-2- 99.9 7.8E-21 1.7E-25 181.1 22.1 212 13-355 82-296 (300)
26 TIGR01920 Shik_kin_archae shik 99.9 1.1E-20 2.5E-25 176.4 22.3 99 13-115 63-164 (261)
27 PRK02534 4-diphosphocytidyl-2- 99.9 2.7E-21 5.9E-26 185.2 18.3 222 13-353 85-310 (312)
28 PRK01123 shikimate kinase; Pro 99.9 3.4E-20 7.3E-25 175.2 22.8 100 13-117 74-176 (282)
29 PRK00128 ipk 4-diphosphocytidy 99.9 6.2E-21 1.3E-25 180.6 16.3 188 13-322 83-272 (286)
30 TIGR00144 beta_RFAP_syn beta-R 99.9 1.5E-19 3.3E-24 173.6 23.1 221 13-354 81-324 (324)
31 COG1907 Predicted archaeal sug 99.8 2.8E-19 6.1E-24 163.6 21.6 228 10-354 67-311 (312)
32 TIGR01219 Pmev_kin_ERG8 phosph 99.8 3.7E-18 7.9E-23 169.2 24.5 243 12-325 111-431 (454)
33 TIGR00154 ispE 4-diphosphocyti 99.8 1.5E-18 3.2E-23 164.8 18.6 95 12-118 84-178 (293)
34 PRK14616 4-diphosphocytidyl-2- 99.8 3.4E-18 7.4E-23 162.0 16.9 193 13-325 82-276 (287)
35 PRK14614 4-diphosphocytidyl-2- 99.8 2.7E-18 5.8E-23 162.1 15.5 95 13-119 84-178 (280)
36 PRK14608 4-diphosphocytidyl-2- 99.8 1.2E-17 2.6E-22 158.4 16.6 94 13-118 89-182 (290)
37 PRK14615 4-diphosphocytidyl-2- 99.7 3.8E-17 8.3E-22 155.3 16.7 95 13-119 87-182 (296)
38 PRK14611 4-diphosphocytidyl-2- 99.7 1.6E-16 3.5E-21 149.6 18.7 94 13-118 79-172 (275)
39 PRK14612 4-diphosphocytidyl-2- 99.7 3.6E-17 7.8E-22 154.1 13.5 90 13-118 82-171 (276)
40 PRK14613 4-diphosphocytidyl-2- 99.7 1.9E-16 4.2E-21 150.6 18.3 197 13-327 92-291 (297)
41 PRK14609 4-diphosphocytidyl-2- 99.7 5.1E-17 1.1E-21 152.4 14.1 94 13-118 81-175 (269)
42 PRK00343 ipk 4-diphosphocytidy 99.6 2.7E-14 5.9E-19 134.1 15.6 93 13-118 86-178 (271)
43 PRK00650 4-diphosphocytidyl-2- 99.6 1.7E-13 3.6E-18 129.0 16.9 92 13-116 79-170 (288)
44 TIGR01240 mevDPdecarb diphosph 99.5 1.4E-12 3.1E-17 124.2 22.9 203 13-323 84-304 (305)
45 PF00288 GHMP_kinases_N: GHMP 99.5 2.6E-14 5.7E-19 105.7 8.3 67 16-83 1-67 (67)
46 PF08544 GHMP_kinases_C: GHMP 99.5 5.2E-14 1.1E-18 108.6 7.8 82 238-324 1-84 (85)
47 PRK14610 4-diphosphocytidyl-2- 99.5 3.5E-13 7.6E-18 127.4 14.2 89 13-115 83-173 (283)
48 COG1685 Archaeal shikimate kin 99.5 5.1E-12 1.1E-16 115.1 20.3 99 13-115 69-170 (278)
49 COG1947 IspE 4-diphosphocytidy 99.5 3.4E-13 7.3E-18 125.9 12.8 94 13-118 84-177 (289)
50 KOG1537 Homoserine kinase [Ami 99.3 3.7E-11 8.1E-16 108.7 13.8 226 14-353 94-352 (355)
51 PRK05905 hypothetical protein; 99.3 2.3E-11 5.1E-16 113.0 12.5 91 13-117 85-176 (258)
52 KOG4644 L-fucose kinase [Carbo 99.2 6.8E-10 1.5E-14 108.6 18.3 211 13-316 690-915 (948)
53 PRK04181 4-diphosphocytidyl-2- 99.0 1.6E-09 3.4E-14 101.0 9.3 94 13-119 85-179 (257)
54 COG4542 PduX Protein involved 99.0 5.2E-08 1.1E-12 88.2 17.1 182 13-311 82-265 (293)
55 PLN02407 diphosphomevalonate d 98.9 1.2E-07 2.5E-12 90.9 20.2 60 16-84 105-167 (343)
56 COG3407 MVD1 Mevalonate pyroph 98.8 1.4E-06 3E-11 83.0 21.3 63 13-84 89-151 (329)
57 KOG2833 Mevalonate pyrophospha 98.8 2E-06 4.4E-11 80.2 20.7 62 14-84 105-166 (395)
58 COG3890 ERG8 Phosphomevalonate 98.5 2E-05 4.4E-10 72.5 18.2 88 26-117 107-204 (337)
59 COG1829 Predicted archaeal kin 98.4 2.1E-05 4.6E-10 72.6 17.8 94 14-114 74-170 (283)
60 KOG4519 Phosphomevalonate kina 97.8 0.0033 7.2E-08 59.5 18.4 66 26-94 152-231 (459)
61 PF03460 NIR_SIR_ferr: Nitrite 74.8 7.7 0.00017 28.0 4.9 48 272-321 21-68 (69)
62 COG2221 DsrA Dissimilatory sul 52.1 21 0.00046 34.2 4.3 47 272-320 42-88 (317)
63 PF06153 DUF970: Protein of un 38.4 59 0.0013 26.2 4.3 51 277-327 13-68 (109)
64 PF09182 PuR_N: Bacterial puri 38.0 1.7E+02 0.0036 21.7 6.3 60 233-300 4-65 (70)
65 PRK04181 4-diphosphocytidyl-2- 31.6 37 0.0008 31.6 2.5 27 273-308 229-255 (257)
66 TIGR01743 purR_Bsub pur operon 25.9 2.7E+02 0.0058 26.2 7.2 68 252-327 24-93 (268)
67 PF07862 Nif11: Nitrogen fixat 24.1 1.5E+02 0.0033 19.7 3.9 36 251-288 5-40 (49)
68 PF08060 NOSIC: NOSIC (NUC001) 21.7 1.6E+02 0.0035 20.2 3.7 32 252-283 9-40 (53)
69 TIGR03798 ocin_TIGR03798 bacte 21.7 1.5E+02 0.0033 21.0 3.7 35 252-288 4-38 (64)
No 1
>PLN02521 galactokinase
Probab=100.00 E-value=4e-60 Score=474.74 Aligned_cols=344 Identities=75% Similarity=1.123 Sum_probs=295.7
Q ss_pred CcEEEEEEecCCCCCCCChHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhhhhhCCCCCchhHHHHHhhcCCeEEEEec
Q 018397 13 QLFNHINSLFFNLGSGLSSSTAFVCSSTVALMAAFGVEVPKKEIAQLTCECEQFIGTQSGGMDQAISIMAKSGFAELIDF 92 (356)
Q Consensus 13 ~g~~i~i~s~IP~~~GLGSSaAl~va~~~al~~l~~~~ls~~el~~la~~~E~~~g~~~G~~D~~~~~~Gg~~~~~~~d~ 92 (356)
.||++.|+|+||+++|||||||++||++.+++.+++.++++++++++|.++|+++|.++|+|||+++++|+.++++++||
T Consensus 148 ~g~~i~i~s~IP~gsGLgSSAA~~vA~~~al~~~~~~~l~~~~la~la~~~E~~~g~~~g~mDq~as~~g~~g~al~~d~ 227 (497)
T PLN02521 148 VGLDVVVDGTVPTGSGLSSSAALVCSAAIAIMAALGLNFTKKEVAQFTCKCERHIGTQSGGMDQAISIMAQQGVAKLIDF 227 (497)
T ss_pred CCeEEEEecCCCCCCCcchHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhCccCCCCChHHHHHHHhcCCCcEEEEec
Confidence 49999999999999999999999999999999999999999999999999999889999999999999999999999999
Q ss_pred CCCeeEEeecCCCcEEEEEecCcchhhhhhcccchhhHHHHHHHHHHHHHHHhCCCchhhhhhhccchhhhhhhhhhhcc
Q 018397 93 NPIRTTDVQLPAGGTFVVAHSLAESLKAITAASNYNNRVVECRLTAIVLAIKLGMKPQEAISKVKTLSDVEGLCVAFACK 172 (356)
Q Consensus 93 ~~~~~~~~~~p~~~~~ll~~s~~~~~~~~~~~~~~~~r~~e~~~a~~~l~~~~~~~~~~~~~~~~~Lr~v~~~~~~~~g~ 172 (356)
+++.++++++|.++.|+|++|++++.|+.++++.||.|++||+.|+++|+++.++..++....+++|||+++++-.+.|.
T Consensus 228 ~~l~~~~v~~p~~~~~vv~~s~v~~~k~~~a~~~Yn~R~~ec~~Aa~~L~~~~~~~~~~~~~~~~~Lrd~~~~~~~~~~~ 307 (497)
T PLN02521 228 NPVRATDVQLPAGGTFVIANSLAESNKAVTAATNYNNRVVECRLAAIVLAVKLGMSAEEAISKVKTLSDVEGLCVSFAGS 307 (497)
T ss_pred CCCceEEeecCCCcEEEEEECCCcccccccccccccHHHHHHHHHHHHHHhhcCCcchhcccccCCHHHHHHHHhhhccc
Confidence 99999999999899999999999999999999999999999999999999888775443222467899987654444454
Q ss_pred CCCCCCccccc-----CCCCHHHHHHHhhhhhhhhhhcCCChhhHHhhhhhHHHHHHHhhHHhHHHHHHHHHHHHhcCCC
Q 018397 173 NGSSDPVFAVK-----EPYTALDIEKITEEKLTSIFANSSSSLDVLNAAKQYKLHQRAAHVYSEAKRVHAFKDTVSSNLS 247 (356)
Q Consensus 173 ~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~i~E~~rv~~~~~al~~~~~ 247 (356)
.+...++..++ ..|++++++++++..++++++...+..+.+...+.+.+++|+.|+++|+.||.+++++|++++.
T Consensus 308 ~~~~~~~~~~~~~l~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~Ra~Hvv~E~~RV~~~~~al~~~~~ 387 (497)
T PLN02521 308 HGSSDPAVAVKELLHEGPYTAEEIEEILGESLTSIFKNSPTSLAVLKAAKHFKLHQRAVHVYSEAKRVHAFRDTVSSSLS 387 (497)
T ss_pred ccchhhHHHhhhhhccccCCHHHHHHHhCCcHHHHhhccccccccccccchhHHhhhhhheecHHHHHHHHHHHHHhcCc
Confidence 44444443332 5678888888766445555444444444444566788999999999999999999999988654
Q ss_pred chHHHHHHHHHHHHHHHHhhhhcCCCChHHHHHHHHHHhCCCceeEEeccCCcceEEEEecCCcHHHHHHHHHHHHHhcc
Q 018397 248 EEDKLKKLGDLMNDSHHSCSVLYECSCPELEELVNVCRNNGALGARLTGAGWGGCVVALVKESIDSQFILNLKEQFYQSR 327 (356)
Q Consensus 248 ~~~~~~~lg~lm~~sh~~lr~~~~vs~peld~lv~~a~~~Ga~GaklsGaG~GG~vi~l~~~~~~~~~~~~l~~~~~~~~ 327 (356)
.+.+++.||++|+++|.++|++|+||||++|.|++++++.|++|+||||||||||+++|++++.++++++.+.+.|+++.
T Consensus 388 ~~~~~~~lg~lm~~sh~slr~~~~vS~~elD~lv~~a~~~Ga~GaRltGaG~GG~~i~lv~~~~~~~~~~~l~~~y~~~~ 467 (497)
T PLN02521 388 EEEKLKKLGDLMNESHYSCSVLYECSCPELEELVKVCRDNGALGARLTGAGWGGCAVALVKEAIVPQFILALKEKFYKSR 467 (497)
T ss_pred cchHHHHHHHHHHHHHHHHhhccCCCcHHHHHHHHHHHhcCCcEEEECCCCCCeEEEEEECHHHHHHHHHHHHHHHHhhc
Confidence 44569999999999999999999999999999999999999999999999999999999999889999999999999876
Q ss_pred cCCCcccCCCCcceEEEeecCCceeeccC
Q 018397 328 IDRGVINNNDLGLYVFASKPSSGAAKFKF 356 (356)
Q Consensus 328 ~~~~~~~~~~~~~~~~~~~p~~Ga~v~~~ 356 (356)
+.++.+.+.++++.+|+++|++||++++|
T Consensus 468 ~~~~~~~~~~~~~~~~~~~p~~Ga~~~~~ 496 (497)
T PLN02521 468 IEKGVIKEEDLGLYVFASKPSSGAAILKF 496 (497)
T ss_pred cccccccccCCCCcEEEEecCCCceEeec
Confidence 43345666678899999999999999876
No 2
>COG0153 GalK Galactokinase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=4.6e-59 Score=442.15 Aligned_cols=284 Identities=33% Similarity=0.501 Sum_probs=251.7
Q ss_pred Ccchhhhhh---cCCcEEEEEEecCCCCCCCChHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhhh-hhCCCCCchhHH
Q 018397 2 KGETVVIIT---KFQLFNHINSLFFNLGSGLSSSTAFVCSSTVALMAAFGVEVPKKEIAQLTCECEQ-FIGTQSGGMDQA 77 (356)
Q Consensus 2 ~~~~~~~~~---~~~g~~i~i~s~IP~~~GLGSSaAl~va~~~al~~l~~~~ls~~el~~la~~~E~-~~g~~~G~~D~~ 77 (356)
+|+.+.+.. .++|+++.|.|+||.|+|||||||+.||++.++.+++++++++.+++++|+.+|+ |+|.+||+|||+
T Consensus 100 kgvi~~l~~~g~~~~G~~i~i~gnIP~GaGLSSSAAleva~~~al~~l~~~~~~k~~la~i~q~AEn~fvGvn~G~mDQ~ 179 (390)
T COG0153 100 KGVIKALQKRGYAFTGLDIVISGNIPIGAGLSSSAALEVAVALALQRLFNLPLDKAELAKIAQVAENQFVGVNCGIMDQL 179 (390)
T ss_pred HHHHHHHHhcCCCcCCeeEEEecCCCCCCCcCchHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhhccCCcCchHHHH
Confidence 344555544 4579999999999999999999999999999999999999999999999999995 999999999999
Q ss_pred HHHhhcCCeEEEEecCCCeeEEeecCCC-cEEEEEecCcchhhhhhcccchhhHHHHHHHHHHHHHHHhCCCchhhhhhh
Q 018397 78 ISIMAKSGFAELIDFNPIRTTDVQLPAG-GTFVVAHSLAESLKAITAASNYNNRVVECRLTAIVLAIKLGMKPQEAISKV 156 (356)
Q Consensus 78 ~~~~Gg~~~~~~~d~~~~~~~~~~~p~~-~~~ll~~s~~~~~~~~~~~~~~~~r~~e~~~a~~~l~~~~~~~~~~~~~~~ 156 (356)
++.+|+.++++++||++++++++|+|.+ +.|+|+||++ ++.++.++||.|+.||+.|++.|++..
T Consensus 180 ~s~~G~~~~al~ld~~~l~~~~~~~p~~~~~ivI~ns~v---kr~la~seYn~Rr~ece~A~~~l~~~~----------- 245 (390)
T COG0153 180 ASAFGKKDHALLLDCRTLEYEPVPFPVGGVSIVIVNSNV---KRELADSEYNERRAECEEAAEFLGVSI----------- 245 (390)
T ss_pred HHHhCCCCcEEEEEcccCceEEeccCccceEEEEecCCC---ccccchhHHHHHHHHHHHHHHHHHHhh-----------
Confidence 9999999999999999999999999986 9999999998 678999999999999999999999831
Q ss_pred ccchhhhhhhhhhhccCCCCCCcccccCCCCHHHHHHHhhhhhhhhhhcCCChhhHHhhhhhHHHHHHHhhHHhHHHHHH
Q 018397 157 KTLSDVEGLCVAFACKNGSSDPVFAVKEPYTALDIEKITEEKLTSIFANSSSSLDVLNAAKQYKLHQRAAHVYSEAKRVH 236 (356)
Q Consensus 157 ~~Lr~v~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~i~E~~rv~ 236 (356)
+.|+|+.. +++.++.+. + .. .+..++|+.|+++|+.|++
T Consensus 246 ~~L~d~~~------------------------~~~~~~~~~------------i----~~-~~~~~rRa~hvv~En~Rvl 284 (390)
T COG0153 246 KSLRDVTD------------------------EEFAALQAE------------I----EV-DPKIARRARHVVTENQRVL 284 (390)
T ss_pred hhhhhcCH------------------------HHHHhhhhh------------c----cc-chHHHHHHHHHHhHHHHHH
Confidence 36776543 233332210 0 00 1247899999999999999
Q ss_pred HHHHHHhcCCCchHHHHHHHHHHHHHHHHhhhhcCCCChHHHHHHHHHHh-CCCceeEEeccCCcceEEEEecCCcHHHH
Q 018397 237 AFKDTVSSNLSEEDKLKKLGDLMNDSHHSCSVLYECSCPELEELVNVCRN-NGALGARLTGAGWGGCVVALVKESIDSQF 315 (356)
Q Consensus 237 ~~~~al~~~~~~~~~~~~lg~lm~~sh~~lr~~~~vs~peld~lv~~a~~-~Ga~GaklsGaG~GG~vi~l~~~~~~~~~ 315 (356)
+++.||+++| +.+||+||++||.+||++|+|||||+|+|+++|.. .|++|+||||||||||+|+|++.+.++++
T Consensus 285 ~a~~Al~~~d-----l~~fG~Lm~~SH~slrddyevt~pElD~lve~a~~~~G~~GaRmTGaGfGGc~IaLv~~~~v~~~ 359 (390)
T COG0153 285 EAAKALRSGD-----LTEFGELMNESHESLRDDYEVTCPELDTLVEIALAAGGAYGARMTGAGFGGCVIALVPNDDVEAV 359 (390)
T ss_pred HHHHHHHcCC-----HHHHHHHHHHHHHHHHhcccccchhHHHHHHHHHHcCCcccceecCCCCCceEEEEechhhHHHH
Confidence 9999998774 99999999999999999999999999999999986 58899999999999999999999999999
Q ss_pred HHHHHHHHHhcccCCCcccCCCCcceEEEeecCCceeec
Q 018397 316 ILNLKEQFYQSRIDRGVINNNDLGLYVFASKPSSGAAKF 354 (356)
Q Consensus 316 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~Ga~v~ 354 (356)
.+.|.+.|++..+ +++.+|+++|+.|++++
T Consensus 360 ~e~v~~~y~~~~g---------~k~~~yv~~~~~G~~~~ 389 (390)
T COG0153 360 AEAVAEEYEKVTG---------LKAAFYVVEASQGAGVC 389 (390)
T ss_pred HHHHHHhHHhhcC---------ccccEEEEeccCCcccc
Confidence 9999999988775 68899999999999975
No 3
>PLN02865 galactokinase
Probab=100.00 E-value=3.5e-53 Score=416.19 Aligned_cols=284 Identities=26% Similarity=0.312 Sum_probs=243.0
Q ss_pred CcEEEEEEecC-CCCCCCChHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhhh-hhCCCCCchhHHHHHhhcCCeEEEE
Q 018397 13 QLFNHINSLFF-NLGSGLSSSTAFVCSSTVALMAAFGVEVPKKEIAQLTCECEQ-FIGTQSGGMDQAISIMAKSGFAELI 90 (356)
Q Consensus 13 ~g~~i~i~s~I-P~~~GLGSSaAl~va~~~al~~l~~~~ls~~el~~la~~~E~-~~g~~~G~~D~~~~~~Gg~~~~~~~ 90 (356)
+||++.|+++| |.++|||||||++||++.+++.+++.++++++++++|+++|+ ++|.+||+|||+++++|..++++++
T Consensus 129 ~G~~~~v~g~vpP~gsGLsSSAAl~va~~~al~~~~~~~~~~~~la~~a~~~E~~~~G~~~G~mDQ~as~~~~~g~~~~i 208 (423)
T PLN02865 129 QGITGYISGSEGLDSSGLSSSAAVGVAYLLALENANNLTVSPEDNIELDRLIENEYLGLRNGILDQSAILLSRYGCLTFM 208 (423)
T ss_pred CceEEEEECCCCCCCCcccHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhcCCCCccccHHHHHhcccCceEEE
Confidence 69999999999 579999999999999999999999999999999999999997 8899999999999999999999999
Q ss_pred ecCCCeeEEeecC-------CCcEEEEEecCcchhhhhhc-ccchhhHHHHHHHHHHHHHHHhCCCchhhhhhhccchhh
Q 018397 91 DFNPIRTTDVQLP-------AGGTFVVAHSLAESLKAITA-ASNYNNRVVECRLTAIVLAIKLGMKPQEAISKVKTLSDV 162 (356)
Q Consensus 91 d~~~~~~~~~~~p-------~~~~~ll~~s~~~~~~~~~~-~~~~~~r~~e~~~a~~~l~~~~~~~~~~~~~~~~~Lr~v 162 (356)
||+++.++.+++| .++.|++++|++ +|.+. ++.||.|+.||+.|+++|++++++... ++.||++
T Consensus 209 Df~~l~~~~vpl~~~~~~~~~~~~ivv~~s~~---~h~l~~~~~Yn~Rr~Ec~~aa~~l~~~~~~~~~-----~~~Lr~~ 280 (423)
T PLN02865 209 DCKTLDHKLVSLQFQQPGGEKPFKILLAFSGL---RHALTNKPGYNLRVSECQEAARFLLEASGNDEL-----EPLLCNV 280 (423)
T ss_pred EccCCCcceeecCcccccCCCCeEEEEEeCCC---chhhcccchhhHHHHHHHHHHHHHHHhcCCccc-----hhhhhcC
Confidence 9999877777766 368999999998 45555 789999999999999999987664211 2356654
Q ss_pred hhhhhhhhccCCCCCCcccccCCCCHHHHHHHhhhhhhhhhhcCCChhhHHhhhhhHHHHHHHhhHHhHHHHHHHHHHHH
Q 018397 163 EGLCVAFACKNGSSDPVFAVKEPYTALDIEKITEEKLTSIFANSSSSLDVLNAAKQYKLHQRAAHVYSEAKRVHAFKDTV 242 (356)
Q Consensus 163 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~i~E~~rv~~~~~al 242 (356)
. .+++.+... .+ .+.+++|+.|+++|+.||.+++.+|
T Consensus 281 ~------------------------~~~~~~~~~-~l------------------~~~l~~Ra~Hv~~E~~Rv~~~~~al 317 (423)
T PLN02865 281 E------------------------PEVYEAHKC-KL------------------EAVLARRAEHYFSENMRVIKGVEAW 317 (423)
T ss_pred C------------------------HHHHHHHHh-hc------------------CHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2 223322211 01 1236899999999999999999999
Q ss_pred hcCCCchHHHHHHHHHHHHHHHHhhhhcCCCChHHHHHHHHHHh-CCCceeEEeccCCcceEEEEecCCcHHHHHHHHHH
Q 018397 243 SSNLSEEDKLKKLGDLMNDSHHSCSVLYECSCPELEELVNVCRN-NGALGARLTGAGWGGCVVALVKESIDSQFILNLKE 321 (356)
Q Consensus 243 ~~~~~~~~~~~~lg~lm~~sh~~lr~~~~vs~peld~lv~~a~~-~Ga~GaklsGaG~GG~vi~l~~~~~~~~~~~~l~~ 321 (356)
+++| ++.||+||+++|.++|++|+|||||+|.|++.+++ .|++|+||||+|||||+++|++.+.++++++++.+
T Consensus 318 ~~~d-----~~~~g~lm~~sh~Slrd~yevS~~eld~lv~~a~~~~Ga~GaR~tGgGfGGc~vaLv~~~~~~~~~~~v~~ 392 (423)
T PLN02865 318 ASGN-----LEEFGKLISASGLSSIENYECGCEPLIQLYEILLKAPGVYGARFSGAGFRGCCVAFVDAEMAEEAASFVRD 392 (423)
T ss_pred HhCC-----HHHHHHHHHHhhhhHHhhccCCcHHHHHHHHHHHhcCCCeEEEEeccCCccEEEEEEchhHHHHHHHHHHH
Confidence 9874 99999999999999999999999999999999998 59999999999999999999999999999999999
Q ss_pred HHHhcccCCCcccCCCCcceEEEeecCCceeec
Q 018397 322 QFYQSRIDRGVINNNDLGLYVFASKPSSGAAKF 354 (356)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~Ga~v~ 354 (356)
.|+++.+ +..++-+.++.+|+++|++||+++
T Consensus 393 ~Y~~~~p--~~~~~~~~~~~~~~~~p~~Ga~~~ 423 (423)
T PLN02865 393 EYEKAQP--ELASNINGDKPVLICEAGDCARVL 423 (423)
T ss_pred HHHhhcc--ccccccCCCCcEEEEecCCCcccC
Confidence 9997642 111112357899999999999975
No 4
>PTZ00290 galactokinase; Provisional
Probab=100.00 E-value=4.8e-53 Score=419.04 Aligned_cols=296 Identities=21% Similarity=0.283 Sum_probs=237.0
Q ss_pred CcEEEEEEecCCCCCCCChHHHHHHHHHHHHHHHhCC-----------------CCC---HHHHHHHHHHhhh-hhCCCC
Q 018397 13 QLFNHINSLFFNLGSGLSSSTAFVCSSTVALMAAFGV-----------------EVP---KKEIAQLTCECEQ-FIGTQS 71 (356)
Q Consensus 13 ~g~~i~i~s~IP~~~GLGSSaAl~va~~~al~~l~~~-----------------~ls---~~el~~la~~~E~-~~g~~~ 71 (356)
+||++.|.++||.|+|||||||+.||++.+++.+++. .++ ..+++.+|+++|+ ++|.+|
T Consensus 133 ~G~d~~i~gdVP~GaGLSSSAAleva~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lA~~aqraEn~~vGv~c 212 (468)
T PTZ00290 133 QGVCMVVHGTLPMGAGMSASASFGVALLNAINTVVTRRYKGCPTSPGRRYSILPPMSKEELIELAKQARRIETEFCGVNV 212 (468)
T ss_pred CCeEEEEeCCCCCCCCcchHHHHHHHHHHHHHHHhhhhccccccccccccccccccCcccHHHHHHHHHHHHHhhcCCCc
Confidence 6999999999999999999999999999999998632 123 4789999999998 899999
Q ss_pred CchhHHHHHhhcCCeEEEEecCCCeeEEeecC----CCcEEEEEecCcchhhhhhcccchhhHHHHHHHHHHHHHHHhCC
Q 018397 72 GGMDQAISIMAKSGFAELIDFNPIRTTDVQLP----AGGTFVVAHSLAESLKAITAASNYNNRVVECRLTAIVLAIKLGM 147 (356)
Q Consensus 72 G~~D~~~~~~Gg~~~~~~~d~~~~~~~~~~~p----~~~~~ll~~s~~~~~~~~~~~~~~~~r~~e~~~a~~~l~~~~~~ 147 (356)
|+|||+++++|+.++++++||+++++++++++ .++.|+|+||+++++...+++..||.|+.||+.|++.|++..-
T Consensus 213 GiMDQ~asa~g~~~~al~iD~~~l~~~~v~l~~~~~~~~~~vV~nS~v~h~l~~s~~~~Yn~Rr~ece~a~~~L~~~~l- 291 (468)
T PTZ00290 213 GIMDQFISAFAEEDKFMFLDCKSLTFESHDMTPLLGDGACFLLIDSMIKHDLLGGTAGMYNTVRSDQEGAQKKIGKHRY- 291 (468)
T ss_pred chhhHHHHHhCCCCcEEEEecCCCeEEEeccCCCCCCCcEEEEEeCCCcchhccccchhhHHHHHHHHHHHHHhccccc-
Confidence 99999999999999999999999999999875 4799999999996654444455999999999999999965310
Q ss_pred Cchhhhhhhc-cchhhhhhhhhhhccCCCCCCcccccCCCCHHH-HHHHhhhhhhhhhhcCCChhhHHhhhhhHHHHHHH
Q 018397 148 KPQEAISKVK-TLSDVEGLCVAFACKNGSSDPVFAVKEPYTALD-IEKITEEKLTSIFANSSSSLDVLNAAKQYKLHQRA 225 (356)
Q Consensus 148 ~~~~~~~~~~-~Lr~v~~~~~~~~g~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~ 225 (356)
+.++ +||++... .++|++++ ...+.. .+.+.+ .+.+++|+
T Consensus 292 ------~~~~~~Lrd~~~~-----------------~~~~~~~~~~~~~~~--------~~~~~l-------~~~~~~Ra 333 (468)
T PTZ00290 292 ------RGKPFTFSDLVRN-----------------PKKYTFDGDVVAFME--------SCKPLM-------TPGEFERG 333 (468)
T ss_pred ------cchhhhHHHhhhc-----------------cccccccccHHHHHH--------HhhhcC-------CHHHHHHH
Confidence 0111 44543100 02233321 111110 000011 12478999
Q ss_pred hhHHhHHHHHHHHHHHHhcCC--CchHHHHHHHHHHHHHHHHhhhhcCCCChHHHHHHHHH-HhCCCceeEEeccCCcce
Q 018397 226 AHVYSEAKRVHAFKDTVSSNL--SEEDKLKKLGDLMNDSHHSCSVLYECSCPELEELVNVC-RNNGALGARLTGAGWGGC 302 (356)
Q Consensus 226 ~~~i~E~~rv~~~~~al~~~~--~~~~~~~~lg~lm~~sh~~lr~~~~vs~peld~lv~~a-~~~Ga~GaklsGaG~GG~ 302 (356)
+|+++|+.||.+++.+|+... ..+.|++.||+||++||.+||++|+||||++|.|++.+ ...|++|+||||||||||
T Consensus 334 ~HVitEn~RV~~a~~al~~~~~l~~~~~~~~lG~lm~~sh~sL~~~~~vS~~elD~lv~~~~~~~G~~GaRlTGaG~GGc 413 (468)
T PTZ00290 334 TYNIMEQIRTLEFIKLNDPELPLSREERFRKAGEILNAGHQGMRDLMKITTPELDFIHELINEEKGVAGGRMMGGGFGGC 413 (468)
T ss_pred HHHhhHHHHHHHHHHHHHhhhhcccccHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhCCCcEEEEecCCCceE
Confidence 999999999999999995211 11246999999999999999999999999999999986 457999999999999999
Q ss_pred EEEEecCCcHHHHHHHHHHHHHhcccCCCcccCCCCcceEEEeecCCceeeccC
Q 018397 303 VVALVKESIDSQFILNLKEQFYQSRIDRGVINNNDLGLYVFASKPSSGAAKFKF 356 (356)
Q Consensus 303 vi~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~Ga~v~~~ 356 (356)
+++|++++..+++++++.+.|.++++ .++.+|+++|++||+++.+
T Consensus 414 ~i~Lv~~~~~~~~~~~v~~~y~~~~g---------~~~~~~~~~~~~Ga~~~~~ 458 (468)
T PTZ00290 414 IILLLKKNAVDRVVAHVREKFKARFG---------VENDVYPVVAGDGAFVVSL 458 (468)
T ss_pred EEEEechhhHHHHHHHHHHHHHHhhC---------CCCcEEEEecCCCcEEEee
Confidence 99999999999999999999987764 4789999999999998753
No 5
>PRK05322 galactokinase; Provisional
Probab=100.00 E-value=5e-50 Score=393.42 Aligned_cols=274 Identities=30% Similarity=0.408 Sum_probs=241.5
Q ss_pred CcEEEEEEecCCCCCCCChHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhhh-hhCCCCCchhHHHHHhhcCCeEEEEe
Q 018397 13 QLFNHINSLFFNLGSGLSSSTAFVCSSTVALMAAFGVEVPKKEIAQLTCECEQ-FIGTQSGGMDQAISIMAKSGFAELID 91 (356)
Q Consensus 13 ~g~~i~i~s~IP~~~GLGSSaAl~va~~~al~~l~~~~ls~~el~~la~~~E~-~~g~~~G~~D~~~~~~Gg~~~~~~~d 91 (356)
+||++.|.|+||+++|||||||++||++.|++++++.++++++++++|+.+|+ ++|.+||+|||+++++||.++++++|
T Consensus 111 ~g~~i~i~s~iP~gsGLgSSAA~~va~~~al~~~~~~~l~~~~la~~a~~~E~~~~G~~sG~mDq~as~~G~~~~~~~~d 190 (387)
T PRK05322 111 HGFDILIYGNIPNGAGLSSSASIELLTGVILKDLFNLDLDRLELVKLGQKTENEFIGVNSGIMDQFAIGMGKKDHAILLD 190 (387)
T ss_pred CCEEEEEecCCCCCCCccHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhccCCCCcchHHHHHHHhccCCeEEEEe
Confidence 69999999999999999999999999999999999999999999999999998 78999999999999999999999999
Q ss_pred cCCCeeEEeecCC-CcEEEEEecCcchhhhhhcccchhhHHHHHHHHHHHHHHHhCCCchhhhhhhccchhhhhhhhhhh
Q 018397 92 FNPIRTTDVQLPA-GGTFVVAHSLAESLKAITAASNYNNRVVECRLTAIVLAIKLGMKPQEAISKVKTLSDVEGLCVAFA 170 (356)
Q Consensus 92 ~~~~~~~~~~~p~-~~~~ll~~s~~~~~~~~~~~~~~~~r~~e~~~a~~~l~~~~~~~~~~~~~~~~~Lr~v~~~~~~~~ 170 (356)
+++++.+.+++|. ++.|++++|+. ++.+..+.||.|+.||+.+++.+++.+++ +.|+++..
T Consensus 191 ~~~~~~~~~~~~~~~~~lvv~dsg~---~~~~~~~~yn~r~~e~~~a~~~l~~~~~~---------~~l~~~~~------ 252 (387)
T PRK05322 191 CNTLEYEYVPLDLGDYVIVIMNTNK---RRELADSKYNERRAECEKALEELQKKLDI---------KSLGELTE------ 252 (387)
T ss_pred cCCCceEEeccCCCCeEEEEEECCC---ccccCcchhhHHHHHHHHHHHHHhhhcCc---------cchhcCCH------
Confidence 9988888888764 67899999998 66777899999999999999999987542 35555322
Q ss_pred ccCCCCCCcccccCCCCHHHHHHHhhhhhhhhhhcCCChhhHHhhhhhHHHHHHHhhHHhHHHHHHHHHHHHhcCCCchH
Q 018397 171 CKNGSSDPVFAVKEPYTALDIEKITEEKLTSIFANSSSSLDVLNAAKQYKLHQRAAHVYSEAKRVHAFKDTVSSNLSEED 250 (356)
Q Consensus 171 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~i~E~~rv~~~~~al~~~~~~~~ 250 (356)
+++..+... + ..+.+++|+.|+++|+.|+..++.||+++|
T Consensus 253 ------------------~~~~~~~~~-~-----------------~~~~~~~r~~h~v~e~~r~~~~~~al~~~d---- 292 (387)
T PRK05322 253 ------------------EEFDEYSYL-I-----------------KDETLLKRARHAVTENQRTLKAVKALKAGD---- 292 (387)
T ss_pred ------------------HHHHHHHhh-c-----------------CCHHHHHHHHHHHHHHHHHHHHHHHHHhCC----
Confidence 222222110 0 012468999999999999999999999874
Q ss_pred HHHHHHHHHHHHHHHhhhhcCCCChHHHHHHHHHH-hCCCceeEEeccCCcceEEEEecCCcHHHHHHHHHHHHHhcccC
Q 018397 251 KLKKLGDLMNDSHHSCSVLYECSCPELEELVNVCR-NNGALGARLTGAGWGGCVVALVKESIDSQFILNLKEQFYQSRID 329 (356)
Q Consensus 251 ~~~~lg~lm~~sh~~lr~~~~vs~peld~lv~~a~-~~Ga~GaklsGaG~GG~vi~l~~~~~~~~~~~~l~~~~~~~~~~ 329 (356)
++.||++|+++|.+|++.|++|+|++|.|++.++ +.|++|+||||||||||+++|++.+..+++.+.|.+.|+++++
T Consensus 293 -~~~lg~lm~~sh~~L~~~y~~s~~eld~lv~~a~~~~Ga~garlsGaG~GG~vial~~~~~~~~~~~~l~~~y~~~~~- 370 (387)
T PRK05322 293 -LEKFGRLMNASHVSLRDDYEVTGLELDTLVEAAWKQEGVLGARMTGAGFGGCAIAIVKKDKVEAFKENVGKAYEEKIG- 370 (387)
T ss_pred -HHHHHHHHHHhhHHHHhhhcCCCHhHHHHHHHHHhcCCccEEEEecCCCceEEEEEEcHHHHHHHHHHHHHHHHHhcC-
Confidence 9999999999999999999999999999999997 5799999999999999999999988999999999999988764
Q ss_pred CCcccCCCCcceEEEeecCCceeec
Q 018397 330 RGVINNNDLGLYVFASKPSSGAAKF 354 (356)
Q Consensus 330 ~~~~~~~~~~~~~~~~~p~~Ga~v~ 354 (356)
.++.+|+++|++|||++
T Consensus 371 --------~~~~~~~~~~~~Ga~~~ 387 (387)
T PRK05322 371 --------YAASFYVAEIGDGAREL 387 (387)
T ss_pred --------CCCcEEEEecCCCcccC
Confidence 57899999999999974
No 6
>PRK05101 galactokinase; Provisional
Probab=100.00 E-value=5e-50 Score=393.01 Aligned_cols=268 Identities=31% Similarity=0.438 Sum_probs=236.4
Q ss_pred CcEEEEEEecCCCCCCCChHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhhh-hhCCCCCchhHHHHHhhcCCeEEEEe
Q 018397 13 QLFNHINSLFFNLGSGLSSSTAFVCSSTVALMAAFGVEVPKKEIAQLTCECEQ-FIGTQSGGMDQAISIMAKSGFAELID 91 (356)
Q Consensus 13 ~g~~i~i~s~IP~~~GLGSSaAl~va~~~al~~l~~~~ls~~el~~la~~~E~-~~g~~~G~~D~~~~~~Gg~~~~~~~d 91 (356)
.|+++.|.|+||+++|||||||++||++.+++.+++.++++++++++|.++|+ ++|.+||.|||+++++||.++++++|
T Consensus 111 ~g~~i~i~~~iP~gaGLgSSAA~~va~~~al~~~~~~~l~~~~la~~a~~~E~~~~G~~~G~~Dq~~s~~G~~~~~~~~d 190 (382)
T PRK05101 111 GGADLVISGNVPQGAGLSSSASLEVAVGQTFQQLYHLPLSGAEIALNGQEAENQFVGCNCGIMDQLISALGKKDHALLID 190 (382)
T ss_pred CCeEEEEeCCCCCCCCcchHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhcCCCCccHHHHHHHcCCCCeEEEEE
Confidence 59999999999999999999999999999999999999999999999999997 78999999999999999999999999
Q ss_pred cCCCeeEEeecCCCcEEEEEecCcchhhhhhcccchhhHHHHHHHHHHHHHHHhCCCchhhhhhhccchhhhhhhhhhhc
Q 018397 92 FNPIRTTDVQLPAGGTFVVAHSLAESLKAITAASNYNNRVVECRLTAIVLAIKLGMKPQEAISKVKTLSDVEGLCVAFAC 171 (356)
Q Consensus 92 ~~~~~~~~~~~p~~~~~ll~~s~~~~~~~~~~~~~~~~r~~e~~~a~~~l~~~~~~~~~~~~~~~~~Lr~v~~~~~~~~g 171 (356)
+++.++.++++|.++.|+|++|+++ +.+..+.||.|+.||+.|++++... .|+++..
T Consensus 191 ~~~~~~~~~~~~~~~~~vv~~sg~~---~~l~~~~y~~r~~e~~~A~~~l~~~-------------~l~~~~~------- 247 (382)
T PRK05101 191 CRSLETKAVPMPEGVAVVIINSNVK---RGLVDSEYNTRRQQCETAARFFGVK-------------ALRDVTL------- 247 (382)
T ss_pred cCCCceEEeeCCCCcEEEEEeCCCC---ccccccchhHHHHHHHHHHHHhChH-------------hhhcCCH-------
Confidence 9988889999998999999999995 4566789999999999999877542 4454311
Q ss_pred cCCCCCCcccccCCCCHHHHHHHhhhhhhhhhhcCCChhhHHhhhhhHHHHHHHhhHHhHHHHHHHHHHHHhcCCCchHH
Q 018397 172 KNGSSDPVFAVKEPYTALDIEKITEEKLTSIFANSSSSLDVLNAAKQYKLHQRAAHVYSEAKRVHAFKDTVSSNLSEEDK 251 (356)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~i~E~~rv~~~~~al~~~~~~~~~ 251 (356)
+++....+. + .+.+++|+.|+++|+.|+.++++||+++|
T Consensus 248 -----------------~~~~~~~~~-l------------------~~~~~~r~~h~i~E~~rv~~a~~al~~~d----- 286 (382)
T PRK05101 248 -----------------EQFNAVAAE-L------------------DPVVAKRARHVITENARTLEAASALAAGD----- 286 (382)
T ss_pred -----------------HHHHHHHhh-C------------------CHHHHHHHHHHhHHHHHHHHHHHHHHcCC-----
Confidence 222221110 0 12468999999999999999999999874
Q ss_pred HHHHHHHHHHHHHHhhhhcCCCChHHHHHHHHHHhC-CC-ceeEEeccCCcceEEEEecCCcHHHHHHHHHHHHHhcccC
Q 018397 252 LKKLGDLMNDSHHSCSVLYECSCPELEELVNVCRNN-GA-LGARLTGAGWGGCVVALVKESIDSQFILNLKEQFYQSRID 329 (356)
Q Consensus 252 ~~~lg~lm~~sh~~lr~~~~vs~peld~lv~~a~~~-Ga-~GaklsGaG~GG~vi~l~~~~~~~~~~~~l~~~~~~~~~~ 329 (356)
++.||+||+++|.+||+.|++|||++|.|++.+++. |+ +|+||||||||||+++|++++.++++++++.+.|+++.+
T Consensus 287 ~~~lG~Lm~~sh~~lr~~~~vS~~eld~lv~~a~~~~Ga~gGakltGaG~GG~~ial~~~~~~~~~~~~~~~~y~~~~~- 365 (382)
T PRK05101 287 LKRMGELMAESHASMRDDFEITVPQIDTLVEIVKAVIGDQGGVRMTGGGFGGCIVALVPEELVEAVRQAVAEQYEAKTG- 365 (382)
T ss_pred HHHHHHHHHHHhHHHHhhcCCCCHhHHHHHHHHHhccCCcceEEeccCCCccEEEEEEcHHHHHHHHHHHHHHHHHhhC-
Confidence 999999999999999988999999999999999996 98 488999999999999999999999999999999988774
Q ss_pred CCcccCCCCcceEEEeecCCceee
Q 018397 330 RGVINNNDLGLYVFASKPSSGAAK 353 (356)
Q Consensus 330 ~~~~~~~~~~~~~~~~~p~~Ga~v 353 (356)
+++.+|+++|++||++
T Consensus 366 --------~~~~~~~~~~~~Ga~~ 381 (382)
T PRK05101 366 --------LKETFYVCKASQGAGQ 381 (382)
T ss_pred --------CCCeEEEEecCCCccc
Confidence 5778999999999986
No 7
>PRK00555 galactokinase; Provisional
Probab=100.00 E-value=1.4e-48 Score=380.23 Aligned_cols=270 Identities=27% Similarity=0.375 Sum_probs=234.8
Q ss_pred CCcEEEEEEecCCCCCCCChHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhhh-hhCCCCCchhHHHHHhhcCCeEEEE
Q 018397 12 FQLFNHINSLFFNLGSGLSSSTAFVCSSTVALMAAFGVEVPKKEIAQLTCECEQ-FIGTQSGGMDQAISIMAKSGFAELI 90 (356)
Q Consensus 12 ~~g~~i~i~s~IP~~~GLGSSaAl~va~~~al~~l~~~~ls~~el~~la~~~E~-~~g~~~G~~D~~~~~~Gg~~~~~~~ 90 (356)
+.|+++.|.|+||+++|||||||++||++.|++.+++.++++++++++|+++|+ ++|.+||.|||+++++||.++++++
T Consensus 89 ~~g~~i~i~s~iP~g~GLgSSAA~~va~~~al~~~~~~~~~~~~la~~a~~aE~~~~G~~~G~~Dq~as~~G~~~~~~~~ 168 (363)
T PRK00555 89 VPGGAMSITSDVEIGSGLSSSAALECAVLGAVGAATGTRIDRLEQARLAQRAENEYVGAPTGLLDQLAALFGAPKTALLI 168 (363)
T ss_pred CCCeEEEEecCCCCCCCccHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhhCCCCCChhHHHHHHhCCCCeEEEE
Confidence 369999999999999999999999999999999999999999999999999997 7899999999999999999989999
Q ss_pred ecCCCeeEEeecCC---CcEEEEEecCcchhhhhhcccchhhHHHHHHHHHHHHHHHhCCCchhhhhhhccchhhhhhhh
Q 018397 91 DFNPIRTTDVQLPA---GGTFVVAHSLAESLKAITAASNYNNRVVECRLTAIVLAIKLGMKPQEAISKVKTLSDVEGLCV 167 (356)
Q Consensus 91 d~~~~~~~~~~~p~---~~~~ll~~s~~~~~~~~~~~~~~~~r~~e~~~a~~~l~~~~~~~~~~~~~~~~~Lr~v~~~~~ 167 (356)
|+++..+.++++|. ++.|++++|+.+ +.+....||.|+.||+.+++.+.. +.+|++..
T Consensus 169 d~~~~~~~~v~~~~~~~~~~lvv~~s~~~---~~~~~~~y~~rr~~~~~~~~~~~~-------------~~lr~~~~--- 229 (363)
T PRK00555 169 DFRDLTVRPVAFDPDAAGVVLLLMDSRAR---HRHAGGEYAARRASCERAAADLGV-------------SSLRAVQD--- 229 (363)
T ss_pred EcCCCcEEEeccCCCcCceEEEEEcCCCc---ccccchhhHHHHHHHHHHHHHhCc-------------cchhcCCH---
Confidence 99888888888865 357999999985 456678999999999999877642 13444311
Q ss_pred hhhccCCCCCCcccccCCCCHHHHHHHhhhhhhhhhhcCCChhhHHhhhhhHHHHHHHhhHHhHHHHHHHHHHHHhcCCC
Q 018397 168 AFACKNGSSDPVFAVKEPYTALDIEKITEEKLTSIFANSSSSLDVLNAAKQYKLHQRAAHVYSEAKRVHAFKDTVSSNLS 247 (356)
Q Consensus 168 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~i~E~~rv~~~~~al~~~~~ 247 (356)
+.+..+. .. ..+..++|+.|+++|+.|+.+++.+|.++|
T Consensus 230 ---------------------~~~~~~~-----~~--------------~~~~~~~r~~h~~~e~~~v~~~~~al~~gd- 268 (363)
T PRK00555 230 ---------------------RGLAALG-----AI--------------ADPIDARRARHVLTENQRVLDFAAALADSD- 268 (363)
T ss_pred ---------------------HHHHHHH-----hc--------------CChHHHHHHHHHHHHHHHHHHHHHHHHcCC-
Confidence 1111110 00 012358899999999999999999999875
Q ss_pred chHHHHHHHHHHHHHHHHhhhhcCCCChHHHHHHHHHHhCCCceeEEeccCCcceEEEEecCCcHHHHHHHHHHHHHhcc
Q 018397 248 EEDKLKKLGDLMNDSHHSCSVLYECSCPELEELVNVCRNNGALGARLTGAGWGGCVVALVKESIDSQFILNLKEQFYQSR 327 (356)
Q Consensus 248 ~~~~~~~lg~lm~~sh~~lr~~~~vs~peld~lv~~a~~~Ga~GaklsGaG~GG~vi~l~~~~~~~~~~~~l~~~~~~~~ 327 (356)
++.||++|+++|.++|+.|++|+|++|.|++.+++.|++|+||||||||||+++|++.+..+++.+.+++.|++++
T Consensus 269 ----~~~lg~lm~~~h~~lr~~~~vS~~~ld~l~~~a~~~Ga~GaklsGaG~Gg~vial~~~~~~~~~~~~l~~~y~~~~ 344 (363)
T PRK00555 269 ----FTAAGQLLTASHASMRDDFEITTERIDLIADSAVRAGALGARMTGGGFGGCVIALVPADRAEDVADTVRRAAVTAG 344 (363)
T ss_pred ----HHHHHHHHHHhhHHHHhhcCCCChhHHHHHHHHHhcCCeEEEECCCCccCeEEEEEchhHHHHHHHHHHHHHHHcc
Confidence 9999999999999999899999999999999999999999999999999999999998889999999999999877
Q ss_pred cCCCcccCCCCcceEEEeecCCceeec
Q 018397 328 IDRGVINNNDLGLYVFASKPSSGAAKF 354 (356)
Q Consensus 328 ~~~~~~~~~~~~~~~~~~~p~~Ga~v~ 354 (356)
+ .++.+|+++|++||+++
T Consensus 345 ~---------~~~~~~~~~~~~g~~~~ 362 (363)
T PRK00555 345 Y---------PEPAVSRTYAAPGAGEC 362 (363)
T ss_pred C---------CCCcEEEEecCCCcccC
Confidence 5 46799999999999986
No 8
>TIGR00131 gal_kin galactokinase. The galactokinases found by this model are divided into two sets. Prokaryotic forms are generally shorter. The eukaryotic forms are longer because of additional central regions and in some cases are known to be bifunctional, with regulatory activities that are independent of galactokinase activity.
Probab=100.00 E-value=2.1e-48 Score=382.70 Aligned_cols=274 Identities=34% Similarity=0.474 Sum_probs=234.7
Q ss_pred CcEEEEEEecCCCCCCCChHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhhh-hhCCCCCchhHHHHHhhcCCeEEEEe
Q 018397 13 QLFNHINSLFFNLGSGLSSSTAFVCSSTVALMAAFGVEVPKKEIAQLTCECEQ-FIGTQSGGMDQAISIMAKSGFAELID 91 (356)
Q Consensus 13 ~g~~i~i~s~IP~~~GLGSSaAl~va~~~al~~l~~~~ls~~el~~la~~~E~-~~g~~~G~~D~~~~~~Gg~~~~~~~d 91 (356)
.||++.|+++||+++|||||||++||++.+++.+++.+++++++++++..+|+ +.|.++|+|||+++++||.+++++++
T Consensus 109 ~g~~i~i~s~iP~gsGLgSSAA~~vA~~~al~~~~~~~~~~~~l~~~a~~~E~~~~G~~~g~~Dq~~s~~G~~~~~l~~~ 188 (386)
T TIGR00131 109 LGADIVCSGNVPTGSGLSSSAAFECAVGAVLQNMGHLPLDSKQILLRIQVAENHFVGVNCGIMDQAASVLGKEDHALLVE 188 (386)
T ss_pred CceEEEEECCCCCCCCcchHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCccCCCcchHHHHHHHhccCCcEEEEE
Confidence 49999999999999999999999999999999999999999999999999998 78999999999999999999999999
Q ss_pred cCCCeeEEeecCC-CcEEEEEecCcchhhhhhcccchhhHHHHHHHHHHHHHHHhCCCchhhhhhhccchhhhhhhhhhh
Q 018397 92 FNPIRTTDVQLPA-GGTFVVAHSLAESLKAITAASNYNNRVVECRLTAIVLAIKLGMKPQEAISKVKTLSDVEGLCVAFA 170 (356)
Q Consensus 92 ~~~~~~~~~~~p~-~~~~ll~~s~~~~~~~~~~~~~~~~r~~e~~~a~~~l~~~~~~~~~~~~~~~~~Lr~v~~~~~~~~ 170 (356)
++++...++++|. ++.|+|++|++++ .+.+..||.|++||+.|+++++... ...+|++.+
T Consensus 189 ~~~~~~~~~~~~~~~~~lvv~~s~~~~---~t~~~~y~~r~~e~~~a~~~l~~~~----------~~~lr~~~~------ 249 (386)
T TIGR00131 189 CRSLKATPFKFPQLGIAFVIANTNVKR---TLAPSNYNTRRQECTTAANFLAATD----------KGALRDFMN------ 249 (386)
T ss_pred cCCCceeeecCCCCCeEEEEEeCCCcc---ccccchhHHHHHHHHHHHHHhcccc----------ccchhhCCH------
Confidence 9988888999987 8999999999954 4666789999999999999987641 124454322
Q ss_pred ccCCCCCCcccccCCCCHHHHHHHhhhhhhhhhhcCCChhhHHhhhhhHHHHHHHhhHHhHHHHHHHHHHHHhcCCCchH
Q 018397 171 CKNGSSDPVFAVKEPYTALDIEKITEEKLTSIFANSSSSLDVLNAAKQYKLHQRAAHVYSEAKRVHAFKDTVSSNLSEED 250 (356)
Q Consensus 171 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~i~E~~rv~~~~~al~~~~~~~~ 250 (356)
+++..++. .+..+ ...+.+|+.|+++|+.||.+++++|.++|
T Consensus 250 ------------------~~~~~~~~-~~~~~---------------~~~~~~r~~h~v~e~~rv~~~~~al~~~d---- 291 (386)
T TIGR00131 250 ------------------EYFARYIA-RLTKM---------------LPLVEERAKHVVSENLRVLKAVKAMKDND---- 291 (386)
T ss_pred ------------------HHHhhhHh-hHhhc---------------CHHHHhhHheeehHHHHHHHHHHHHHhCc----
Confidence 11111000 00000 01246799999999999999999999874
Q ss_pred HHHHHHHHHHHHHHHhhhhcCCCChHHHHHHHHH-HhCCCceeEEeccCCcceEEEEecCCcHHHHHHHHHHHHHhcccC
Q 018397 251 KLKKLGDLMNDSHHSCSVLYECSCPELEELVNVC-RNNGALGARLTGAGWGGCVVALVKESIDSQFILNLKEQFYQSRID 329 (356)
Q Consensus 251 ~~~~lg~lm~~sh~~lr~~~~vs~peld~lv~~a-~~~Ga~GaklsGaG~GG~vi~l~~~~~~~~~~~~l~~~~~~~~~~ 329 (356)
++.||++|+++|.+++++|++|||++|.+++.+ ++.|++|+||||||||||+++|++++.++++.++|++.|+++.+
T Consensus 292 -~~~lG~lm~~sh~~l~~~~~vs~peld~lv~~a~~~~GAlGakltGaG~GG~vial~~~~~~~~v~~~~~~~y~~~~~- 369 (386)
T TIGR00131 292 -FKQFGALMNESHASCDDDYECTCPEIDELVCSAALVNGSGGSRMTGAGFGGCTVHLVPNENVDKVRQAVADKYPKKTG- 369 (386)
T ss_pred -HHHHHHHHHHhhHHHHHhcCCCCHHHHHHHHHHHhcCCCcEEEEecCCCceEEEEEEcHHHHHHHHHHHHHHHHHhhC-
Confidence 999999999999999999999999999999886 66899999999999999999999988899999999999976553
Q ss_pred CCcccCCCCcceEEEeecCCceee
Q 018397 330 RGVINNNDLGLYVFASKPSSGAAK 353 (356)
Q Consensus 330 ~~~~~~~~~~~~~~~~~p~~Ga~v 353 (356)
.++.+|++.++.|++.
T Consensus 370 --------~~~~~~~~~~~~Ga~~ 385 (386)
T TIGR00131 370 --------LELTFYVIVSKPGAGS 385 (386)
T ss_pred --------CCCcEEEEEECCCcCC
Confidence 5789999999999985
No 9
>PRK03817 galactokinase; Provisional
Probab=100.00 E-value=4.5e-43 Score=340.92 Aligned_cols=267 Identities=31% Similarity=0.408 Sum_probs=231.6
Q ss_pred CCcEEEEEEecCCCCCCCChHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhhh-hhCCCCCchhHHHHHhhcCCeEEEE
Q 018397 12 FQLFNHINSLFFNLGSGLSSSTAFVCSSTVALMAAFGVEVPKKEIAQLTCECEQ-FIGTQSGGMDQAISIMAKSGFAELI 90 (356)
Q Consensus 12 ~~g~~i~i~s~IP~~~GLGSSaAl~va~~~al~~l~~~~ls~~el~~la~~~E~-~~g~~~G~~D~~~~~~Gg~~~~~~~ 90 (356)
.+||++.|+|+||+++|||||||+++|++.+++.+++.++++++++++|.++|+ +.|.++|.+||+++.+|+.+.++++
T Consensus 84 ~~~~~i~i~s~iP~~~GLgSSaa~~va~~~al~~~~~~~~~~~~l~~~a~~~E~~~~g~~~g~~D~~~~~~g~~~~~~~~ 163 (351)
T PRK03817 84 VGGVKGKVSSNLPIGAGLSSSASLEVAVAYALNEAYNLNLSKLELALLAREAENEFVGVPCGIMDQFAVAFGKKDHAIFL 163 (351)
T ss_pred CCCeEEEEeCCCCCCCCcCcHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhcccccCCCCcCchhhheeeccCCEEEEE
Confidence 368999999999999999999999999999999999999999999999999997 7899999999999999988888888
Q ss_pred ecCCCeeEEeecCCCcEEEEEecCcchhhhhhcccchhhHHHHHHHHHHHHHHHhCCCchhhhhhhccchhhhhhhhhhh
Q 018397 91 DFNPIRTTDVQLPAGGTFVVAHSLAESLKAITAASNYNNRVVECRLTAIVLAIKLGMKPQEAISKVKTLSDVEGLCVAFA 170 (356)
Q Consensus 91 d~~~~~~~~~~~p~~~~~ll~~s~~~~~~~~~~~~~~~~r~~e~~~a~~~l~~~~~~~~~~~~~~~~~Lr~v~~~~~~~~ 170 (356)
++.+..+.++++|.++.|++++|+.++ .+....||.|+.+|+.+++.++.. .++++
T Consensus 164 ~~~~~~~~~~~~~~~~~~vv~~sg~~~---~~~~~~~~~~~~~~~~~~~~l~~~-------------~~~~~-------- 219 (351)
T PRK03817 164 DTMTLEYEYVPFPEDYEILVFDTGVKR---ELASSEYNERRQECEEALKILGKK-------------SSKEV-------- 219 (351)
T ss_pred ecCCCceEEEecCCCcEEEEEeCCCcc---ccccchhHHHHHHHHHHHHHhCcc-------------chhcC--------
Confidence 988877888899989999999999843 444568999999999998877542 22221
Q ss_pred ccCCCCCCcccccCCCCHHHHHHHhhhhhhhhhhcCCChhhHHhhhhhHHHHHHHhhHHhHHHHHHHHHHHHhcCCCchH
Q 018397 171 CKNGSSDPVFAVKEPYTALDIEKITEEKLTSIFANSSSSLDVLNAAKQYKLHQRAAHVYSEAKRVHAFKDTVSSNLSEED 250 (356)
Q Consensus 171 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~i~E~~rv~~~~~al~~~~~~~~ 250 (356)
+.+++.. + + ..+++|+.|+++|+.|+.+++.+|.++|
T Consensus 220 ----------------~~~~~~~-l----~------------------~~~~~~~~~~v~e~~r~~~~~~al~~~d---- 256 (351)
T PRK03817 220 ----------------TEEDLSK-L----P------------------PLLRKRAGYVLRENERVLKVRDALKEGD---- 256 (351)
T ss_pred ----------------CHHHHHh-C----C------------------HHHHHHHHHHHHHHHHHHHHHHHHHcCC----
Confidence 1111110 0 0 1357889999999999999999999875
Q ss_pred HHHHHHHHHHHHHHHhhhhcCCCChHHHHHHHHHHhCCCceeEEeccCCcceEEEEecCCcHHHHHHHHHHHHHhcccCC
Q 018397 251 KLKKLGDLMNDSHHSCSVLYECSCPELEELVNVCRNNGALGARLTGAGWGGCVVALVKESIDSQFILNLKEQFYQSRIDR 330 (356)
Q Consensus 251 ~~~~lg~lm~~sh~~lr~~~~vs~peld~lv~~a~~~Ga~GaklsGaG~GG~vi~l~~~~~~~~~~~~l~~~~~~~~~~~ 330 (356)
++.||++|+++|.++++.|++++|++|.|++.+++.|++|+||||||||||+++|+++++.+++.+.+++.|.+..+
T Consensus 257 -~~~lg~l~~~s~~~l~~~~~~s~p~ld~l~~~a~~~GalGaklsGaG~Gg~vlal~~~~~~~~~~~~l~~~~~~~~~-- 333 (351)
T PRK03817 257 -IETLGELLTESHWDLADNYEVSCEELDFFVEFALELGAYGARLTGAGFGGSAIALVDKGKFESIGEELLEEYKKRFG-- 333 (351)
T ss_pred -HHHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHcCCCEEEEecCCCCeEEEEEEchHHHHHHHHHHHHHHHHhcC--
Confidence 99999999999999999999999999999999999999999999999999999999988899999999998876543
Q ss_pred CcccCCCCcceEEEeecCCceeecc
Q 018397 331 GVINNNDLGLYVFASKPSSGAAKFK 355 (356)
Q Consensus 331 ~~~~~~~~~~~~~~~~p~~Ga~v~~ 355 (356)
+.+.+|++.|++|++++.
T Consensus 334 -------~~~~~~~~~~~~G~~~~~ 351 (351)
T PRK03817 334 -------IDPKYFVVESSDGVRKIE 351 (351)
T ss_pred -------CCCcEEEEecCCCceeCC
Confidence 467899999999999863
No 10
>KOG0631 consensus Galactokinase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=3.8e-44 Score=345.61 Aligned_cols=338 Identities=37% Similarity=0.556 Sum_probs=284.5
Q ss_pred CcEEEEEEecCCCCCCCChHHHHHHHHHHHHHHHh-CCC--CCHHHHHHHHHHhhhhhCCCCCchhHHHHHhhcCCeEEE
Q 018397 13 QLFNHINSLFFNLGSGLSSSTAFVCSSTVALMAAF-GVE--VPKKEIAQLTCECEQFIGTQSGGMDQAISIMAKSGFAEL 89 (356)
Q Consensus 13 ~g~~i~i~s~IP~~~GLGSSaAl~va~~~al~~l~-~~~--ls~~el~~la~~~E~~~g~~~G~~D~~~~~~Gg~~~~~~ 89 (356)
-|+.+...+++|.|+||+||||+.++.+.|..++. |.+ .+++++.+++...|+++|..+|+|||.++++|..+++++
T Consensus 141 vGl~~l~~g~vPtgsgLsSsaa~~c~a~lA~~~~~~gpn~~~~kkd~~~i~~~ae~~~G~~~gGmdq~asvl~~~~~Al~ 220 (489)
T KOG0631|consen 141 VGLSILNDGSVPTGSGLSSSAAWLCAAALATLKLNLGPNFIISKKDLATITVVAESYIGLNSGGMDQAASVLAEKGHALL 220 (489)
T ss_pred cceEEEecCCCCCCCCcchhHHHHHHHHHHHHHHhcCCCcccchhhhhcceEEeecccCcCCCcHHHHHHHHHhcCceEE
Confidence 38999999999999999999999999988888887 777 789999999999999999999999999999999999999
Q ss_pred Ee--cCCCeeEEeecCCCcEEEEEecCcchhhhhhcccchhhHHHHHHHHHHHHHHHhCCCchhhhhhhccchhhhhhhh
Q 018397 90 ID--FNPIRTTDVQLPAGGTFVVAHSLAESLKAITAASNYNNRVVECRLTAIVLAIKLGMKPQEAISKVKTLSDVEGLCV 167 (356)
Q Consensus 90 ~d--~~~~~~~~~~~p~~~~~ll~~s~~~~~~~~~~~~~~~~r~~e~~~a~~~l~~~~~~~~~~~~~~~~~Lr~v~~~~~ 167 (356)
++ +.|+....+++|....|++.++.+.+++..++..+||.|+.|++.+..+++.+++++..+....++..+...+ .
T Consensus 221 v~~~~~Pf~~~~lk~~~~~vfvI~~~L~~~nk~~~a~tnynlRv~E~~ia~~~la~k~~~~~~~~~~~~~~~~~~~~--~ 298 (489)
T KOG0631|consen 221 VDPYFTPFRRSMLKLPDGGVFVIANSLVESNKAETAETNYNLRVVEGTIAAGELAAKILVELPAYILRYQLQRAWRG--D 298 (489)
T ss_pred ecccCCccccccccCCCCceEEEechhhhhcchhhhhhhhhceeEeeehhhHHHHHHhhcccHHHHHhhhhhhcccc--c
Confidence 99 5588888888887789999999999999999999999999999999999999999877644333333332100 1
Q ss_pred hhhccCCCCCCccccc-----CCCCHHHHHHHhhhhhhhhhhcCCChhhHHhhhhhHHHHHHHhhHHhHHHHHHHHHHHH
Q 018397 168 AFACKNGSSDPVFAVK-----EPYTALDIEKITEEKLTSIFANSSSSLDVLNAAKQYKLHQRAAHVYSEAKRVHAFKDTV 242 (356)
Q Consensus 168 ~~~g~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~i~E~~rv~~~~~al 242 (356)
-..|....++|+..++ ++++.+++...++.+..++.+.++-..++ ..+..++++|++|+++|+.|+.++..++
T Consensus 299 i~~~~~~~~~~l~~v~~~~~~e~f~~ee~~~~l~~~~~~f~~~~~T~~~v--~~~~~k~~~rakHv~sea~rv~q~~~~~ 376 (489)
T KOG0631|consen 299 IGEGYERAEEMLGLVEESLKPEGFNIEEVARALGLDTEEFLQSLLTLAAV--DLQVKKLYQRAKHVYSEALRVLQEEKLC 376 (489)
T ss_pred cchhHHHHHHHHHHHHhhcCcCCCCHHHHHHHhccchHHHHHHhccccch--hhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1122222234443332 57888888888888777777766655555 4556688999999999999999999999
Q ss_pred hcCC-CchHHHHHHHHHHHHHHHHhhhhcCCCChHHHHHHHHHHhCCCceeEEeccCCcceEEEEecCCcHHHHHHHHHH
Q 018397 243 SSNL-SEEDKLKKLGDLMNDSHHSCSVLYECSCPELEELVNVCRNNGALGARLTGAGWGGCVVALVKESIDSQFILNLKE 321 (356)
Q Consensus 243 ~~~~-~~~~~~~~lg~lm~~sh~~lr~~~~vs~peld~lv~~a~~~Ga~GaklsGaG~GG~vi~l~~~~~~~~~~~~l~~ 321 (356)
.+.. ..++.+..||+||++||.|++.+|+|||||+|+|++++++.|.+|+|+||||||||.+++++.+..+.+.+.+.+
T Consensus 377 ~~a~~~~d~~~~~~g~LmneS~~Sc~~~yEcscpel~qL~kiala~g~~gaRlTGaGwGGc~v~lvp~d~~~~~~~~~~~ 456 (489)
T KOG0631|consen 377 ARAPGRADGFLADFGRLMNESHRSCDVLYECSCPELDQLCKIALANGGVGARLTGAGWGGCTVALVPADLVDFAVAALKE 456 (489)
T ss_pred hcCccchhhhHHHHHHHhhhhhHHHHHHHhcCCHhHHHHHHHHHhcCCccceeeccccccceeeeccccchHHHHHhhhh
Confidence 8854 222458899999999999999999999999999999999999999999999999999999998899999999999
Q ss_pred HHHhcccCCCcccCCCCcceEEEeecCCceeeccC
Q 018397 322 QFYQSRIDRGVINNNDLGLYVFASKPSSGAAKFKF 356 (356)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~Ga~v~~~ 356 (356)
.||++.. +.+..+..+..+++++|..|+.++.+
T Consensus 457 ~~Y~ka~--~~~~~~~~k~~~~~skp~~g~~l~el 489 (489)
T KOG0631|consen 457 IYYEKAY--PKFAQDELKKALIVSKPAAGVLLLEL 489 (489)
T ss_pred hhhcccc--chhhhchhhceEEEecCchhhhhccC
Confidence 9998876 66777777888999999999998864
No 11
>PLN02677 mevalonate kinase
Probab=100.00 E-value=2.8e-32 Score=266.06 Aligned_cols=236 Identities=21% Similarity=0.271 Sum_probs=175.3
Q ss_pred CCcEEEEEEecCCCCCCCChHHHHHHHHHHHHHHHhC-CCC-------------CHHHHHHHHHHhhh-hhCCCCCchhH
Q 018397 12 FQLFNHINSLFFNLGSGLSSSTAFVCSSTVALMAAFG-VEV-------------PKKEIAQLTCECEQ-FIGTQSGGMDQ 76 (356)
Q Consensus 12 ~~g~~i~i~s~IP~~~GLGSSaAl~va~~~al~~l~~-~~l-------------s~~el~~la~~~E~-~~g~~~G~~D~ 76 (356)
..++++.|+|+||+|+|||||||++||++.|+..+++ +++ +.+++.++|..+|+ +.|.++|+ |+
T Consensus 127 ~~~~~i~I~S~lP~GaGLGSSAAv~Va~~~AL~~~~~~l~~~~~~~~~~~~~~~~~~~i~~~A~~~E~~~hG~pSGi-D~ 205 (387)
T PLN02677 127 FNPATVVVTSELPLGSGLGSSAAFCVALSAALLAASDSISVSTGGNGWSSLDETDLELVNKWAFEGEKIIHGKPSGI-DN 205 (387)
T ss_pred CCCeEEEEEccCCCCCCccHHHHHHHHHHHHHHHHhCCcccccccccccccChhHHHHHHHHHHHHHHHHhCCCCch-hH
Confidence 4579999999999999999999999999999999998 322 23578899999998 67888875 99
Q ss_pred HHHHhhcCCeEEEEecCCCeeEEeecCCCcEEEEEecCcchhhhhhcccchhhHHHHHHHHHHHHHHHhCCCchhhhhhh
Q 018397 77 AISIMAKSGFAELIDFNPIRTTDVQLPAGGTFVVAHSLAESLKAITAASNYNNRVVECRLTAIVLAIKLGMKPQEAISKV 156 (356)
Q Consensus 77 ~~~~~Gg~~~~~~~d~~~~~~~~~~~p~~~~~ll~~s~~~~~~~~~~~~~~~~r~~e~~~a~~~l~~~~~~~~~~~~~~~ 156 (356)
++++||| .+.++...+++++.|.+++|+|++|++|++|...+.. |
T Consensus 206 a~s~~Gg-----~I~f~~~~~~~l~~~~~l~llv~dTgv~~sT~~lV~~------------------------------V 250 (387)
T PLN02677 206 TVSTYGN-----MIKFKSGELTRLQSNMPLKMLITNTRVGRNTKALVAG------------------------------V 250 (387)
T ss_pred HHHhcCC-----eEEEcCCCceecCCCCCceEEEEECCCCCcHHHHHHH------------------------------H
Confidence 9999999 4555555667777777899999999998876554211 1
Q ss_pred ccchhhhhhhhhhhccCCCCCCcccccCCCCHHHHHHHhhhhhhhhhhcCCChhhHHhhhhhHHHHHHHhhHHhHHHHHH
Q 018397 157 KTLSDVEGLCVAFACKNGSSDPVFAVKEPYTALDIEKITEEKLTSIFANSSSSLDVLNAAKQYKLHQRAAHVYSEAKRVH 236 (356)
Q Consensus 157 ~~Lr~v~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~i~E~~rv~ 236 (356)
..+++- . ++.++ .++++..++ +.
T Consensus 251 ~~~~~~-----------------------~-------------p~~~~---------------~il~~~~~i------~~ 273 (387)
T PLN02677 251 SERALR-----------------------H-------------PDAMK---------------SVFNAVDSI------SE 273 (387)
T ss_pred HHHHHh-----------------------C-------------HHHHH---------------HHHHHHHHH------HH
Confidence 111100 0 00000 012222222 34
Q ss_pred HHHHHHhc--CCC--chHHHHHHHHHHHHHHHHhhhhcCCCChHHHHHHHHHHhCCCceeEEeccCCcceEEEEecCCcH
Q 018397 237 AFKDTVSS--NLS--EEDKLKKLGDLMNDSHHSCSVLYECSCPELEELVNVCRNNGALGARLTGAGWGGCVVALVKESID 312 (356)
Q Consensus 237 ~~~~al~~--~~~--~~~~~~~lg~lm~~sh~~lr~~~~vs~peld~lv~~a~~~Ga~GaklsGaG~GG~vi~l~~~~~~ 312 (356)
++.++|++ +|. .++|++.||++|+.+|..|+.+ ++|+|.+|.+++++++.| +|||+||||+|||+|+|++++..
T Consensus 274 ~a~~al~~~~~~~~~~~~~~~~Lg~lm~~N~~LL~~L-GVS~~~le~iv~~a~~~~-~~AKlTGAGgGGC~IaL~~~~~~ 351 (387)
T PLN02677 274 ELATIIQSPAEDELSITEKEEKLKELMEMNQGLLQCM-GVSHSSIETVLRTTLKYK-LVSKLTGAGGGGCVLTLLPTLLS 351 (387)
T ss_pred HHHHHHhccccccccccchHHHHHHHHHHHHHHHHHc-CCCcHHHHHHHHHHHHcC-CccccccCCCCCEEEEEcccccc
Confidence 55677776 221 1247999999999999999987 899999999999999985 79999999999999999976544
Q ss_pred HHHHHHHHHHHHhcccCCCcccCCCCcceEEEeecCC-ceeec
Q 018397 313 SQFILNLKEQFYQSRIDRGVINNNDLGLYVFASKPSS-GAAKF 354 (356)
Q Consensus 313 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~-Ga~v~ 354 (356)
++..+.+.+.+.+.++ .+|.+.++. |.++.
T Consensus 352 ~~~~~~l~~~l~~~G~------------~~~~~~~g~~Gv~~~ 382 (387)
T PLN02677 352 GTVVDKVIAELESSGF------------QCFTAGIGGNGVQIC 382 (387)
T ss_pred hhHHHHHHHHHHHCCC------------eEEEEEeCCCceEEE
Confidence 5555667777766554 678888875 88764
No 12
>COG1577 ERG12 Mevalonate kinase [Lipid metabolism]
Probab=100.00 E-value=1.2e-31 Score=252.58 Aligned_cols=215 Identities=28% Similarity=0.381 Sum_probs=160.6
Q ss_pred CCcEEEEEEecCCCCCCCChHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhhhh-hCCCCCchhHHHHHhhcCCeEEEE
Q 018397 12 FQLFNHINSLFFNLGSGLSSSTAFVCSSTVALMAAFGVEVPKKEIAQLTCECEQF-IGTQSGGMDQAISIMAKSGFAELI 90 (356)
Q Consensus 12 ~~g~~i~i~s~IP~~~GLGSSaAl~va~~~al~~l~~~~ls~~el~~la~~~E~~-~g~~~G~~D~~~~~~Gg~~~~~~~ 90 (356)
.+||++.|.|+||+++|||||||+.||++.|++.+++.++++++++++++.+|.. .|.++ ++|.++++||| ++++
T Consensus 81 ~~~~~l~I~S~iP~g~GLGSSAAVsva~i~al~~~~g~~ls~~~l~~la~~~e~~vqG~~S-g~D~a~~~~gg---~v~~ 156 (307)
T COG1577 81 LKPFSLEIDSEIPIGAGLGSSAAVSVAVIKALSAYFGVELSPEELAKLANKVELIVQGKAS-GIDIATITYGG---LVAF 156 (307)
T ss_pred CCCeEEEEecCCCCCCCccHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHcCCCC-cccceEEEeCC---EEEE
Confidence 4689999999999999999999999999999999999999999999999999985 46655 59999999999 3344
Q ss_pred ecCCCeeEEeecCCCcEEEEEecCcchhhhhhcccchhhHHHHHHHHHHHHHHHhCCCchhhhhhhccchhhhhhhhhhh
Q 018397 91 DFNPIRTTDVQLPAGGTFVVAHSLAESLKAITAASNYNNRVVECRLTAIVLAIKLGMKPQEAISKVKTLSDVEGLCVAFA 170 (356)
Q Consensus 91 d~~~~~~~~~~~p~~~~~ll~~s~~~~~~~~~~~~~~~~r~~e~~~a~~~l~~~~~~~~~~~~~~~~~Lr~v~~~~~~~~ 170 (356)
... ..++++.++....|++.+++.+.+|...+ +. |..|++
T Consensus 157 ~~~-~~~~~l~~~~~~~~~I~~tg~~~sT~e~V---------------~~---------------V~~l~~--------- 196 (307)
T COG1577 157 KKG-FDFEKLEIELLGTLVIGDTGVPGSTKELV---------------AG---------------VAKLLE--------- 196 (307)
T ss_pred ecC-CCccccccccCCeEEEEEcCCcCcHHHHH---------------HH---------------HHHHHH---------
Confidence 321 34566666654489999999977644321 00 111110
Q ss_pred ccCCCCCCcccccCCCCHHHHHHHhhhhhhhhhhcCCChhhHHhhhhhHHHHHHHhhHHhHHHHHHHHHHHHhcCCCchH
Q 018397 171 CKNGSSDPVFAVKEPYTALDIEKITEEKLTSIFANSSSSLDVLNAAKQYKLHQRAAHVYSEAKRVHAFKDTVSSNLSEED 250 (356)
Q Consensus 171 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~i~E~~rv~~~~~al~~~~~~~~ 250 (356)
+. ++ ......+.+. .-+.++..+++++
T Consensus 197 -------------------~~--------~~-------------------~~~~~~~~ig--~~~~~a~~al~~~----- 223 (307)
T COG1577 197 -------------------EE--------PE-------------------VIDPILDAIG--ELVQEAEAALQTG----- 223 (307)
T ss_pred -------------------hh--------hH-------------------HHHHHHHHHH--HHHHHHHHHHhcc-----
Confidence 00 00 0011111111 1234566778876
Q ss_pred HHHHHHHHHHHHHHHhhhhcCCCChHHHHHHHHHHhCCCceeEEeccCCcceEEEEecCCcHHHHHHHHHHHHHhcc
Q 018397 251 KLKKLGDLMNDSHHSCSVLYECSCPELEELVNVCRNNGALGARLTGAGWGGCVVALVKESIDSQFILNLKEQFYQSR 327 (356)
Q Consensus 251 ~~~~lg~lm~~sh~~lr~~~~vs~peld~lv~~a~~~Ga~GaklsGaG~GG~vi~l~~~~~~~~~~~~l~~~~~~~~ 327 (356)
|.+.||++|+.+|..|..+ ++|+|++|+|++.++++|+.|||+||||+|||+|+|++.. +. .+.+...+++.+
T Consensus 224 d~e~lgelm~~nq~LL~~L-gVs~~~L~~lv~~a~~~Ga~gaKlTGAGgGGc~IaL~~~~--~~-~~~l~~~~~~~~ 296 (307)
T COG1577 224 DFEELGELMNINQGLLKAL-GVSTPELDELVEAARSLGALGAKLTGAGGGGCIIALAKNE--EI-AETLSNRLEKAG 296 (307)
T ss_pred cHHHHHHHHHHHHHHHHhc-CcCcHHHHHHHHHHHhcCccccccccCCCCceEEEEeccc--hH-HHHHHHHHHhcC
Confidence 4999999999999999998 7999999999999999999999999999999999999862 22 455555555443
No 13
>PTZ00298 mevalonate kinase; Provisional
Probab=100.00 E-value=4.8e-31 Score=254.18 Aligned_cols=219 Identities=22% Similarity=0.296 Sum_probs=169.9
Q ss_pred CcEEEEEEecCCCCCCCChHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhhh-hhCCCCCchhHHHHHhhcCCeEEEEe
Q 018397 13 QLFNHINSLFFNLGSGLSSSTAFVCSSTVALMAAFGVEVPKKEIAQLTCECEQ-FIGTQSGGMDQAISIMAKSGFAELID 91 (356)
Q Consensus 13 ~g~~i~i~s~IP~~~GLGSSaAl~va~~~al~~l~~~~ls~~el~~la~~~E~-~~g~~~G~~D~~~~~~Gg~~~~~~~d 91 (356)
+|+++.|.++||+++|||||||+++|++.+++++++.++++++++++|..+|+ +.|.++| +|++++++||. +++.
T Consensus 93 ~g~~I~I~~~IP~gaGLGSSsA~avA~l~al~~l~~~~ls~~el~~~a~~~E~~~~g~~sG-~D~~~~~~Gg~---~~~~ 168 (328)
T PTZ00298 93 DGLKMHLGGPLVPSSGIGASASDVVSLSRALSELYQLNLTEEEVNLSAFVGEGGYHGTPSG-ADNTAATYGGL---ISYR 168 (328)
T ss_pred CCeEEEEECCCCCCCCchHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhcCCCCh-HHHHHHHcCCe---EEEe
Confidence 48999999999999999999999999999999999999999999999999998 7799998 59999999993 3433
Q ss_pred cCC--CeeEEeecCCCcEEEEEecCcchhhhhhcccchhhHHHHHHHHHHHHHHHhCCCchhhhhhhccchhhhhhhhhh
Q 018397 92 FNP--IRTTDVQLPAGGTFVVAHSLAESLKAITAASNYNNRVVECRLTAIVLAIKLGMKPQEAISKVKTLSDVEGLCVAF 169 (356)
Q Consensus 92 ~~~--~~~~~~~~p~~~~~ll~~s~~~~~~~~~~~~~~~~r~~e~~~a~~~l~~~~~~~~~~~~~~~~~Lr~v~~~~~~~ 169 (356)
... ..+.++++|.++.+++++|+.+.+|... |. .+ +.+++.
T Consensus 169 ~~~g~~~~~~l~~~~~~~lvv~~~~~~~sT~~~----~~-----------~v---------------~~~~~~------- 211 (328)
T PTZ00298 169 RVNGKSVFKRIAFQQPLYLVVCSTGITASTTKV----VG-----------DV---------------RKLKEN------- 211 (328)
T ss_pred cCCCccceeEecCCCCCeEEEEECCCchhHHHH----HH-----------HH---------------HHHHhc-------
Confidence 222 2456777777889999999986543221 10 00 000100
Q ss_pred hccCCCCCCcccccCCCCHHHHHHHhhhhhhhhhhcCCChhhHHhhhhhHHHHHHHhhHHhHHHHHHHHHHHHhcCCCch
Q 018397 170 ACKNGSSDPVFAVKEPYTALDIEKITEEKLTSIFANSSSSLDVLNAAKQYKLHQRAAHVYSEAKRVHAFKDTVSSNLSEE 249 (356)
Q Consensus 170 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~i~E~~rv~~~~~al~~~~~~~ 249 (356)
..+.+. .+.++..+ .+.+++.+|.++
T Consensus 212 -----------------~p~~~~---------------------------~~~~~~~~------~~~~~~~al~~~---- 237 (328)
T PTZ00298 212 -----------------QPTWFN---------------------------RLLENYNA------CVSEAKEALQKG---- 237 (328)
T ss_pred -----------------CHHHHH---------------------------HHHHHHHH------HHHHHHHHHHcC----
Confidence 000000 11223332 345667788876
Q ss_pred HHHHHHHHHHHHHHHHhhhhcCCCChHHHHHHHHHHhCCCceeEEeccCCcceEEEEecC-CcHHHHHHHHHHHHHhccc
Q 018397 250 DKLKKLGDLMNDSHHSCSVLYECSCPELEELVNVCRNNGALGARLTGAGWGGCVVALVKE-SIDSQFILNLKEQFYQSRI 328 (356)
Q Consensus 250 ~~~~~lg~lm~~sh~~lr~~~~vs~peld~lv~~a~~~Ga~GaklsGaG~GG~vi~l~~~-~~~~~~~~~l~~~~~~~~~ 328 (356)
|++.|+++|+++|..+++. ++++|++|++++.+++.|++|+||||+|+|||+++|++. +.++++.+.+++.|....+
T Consensus 238 -d~~~lg~~m~~~~~~l~~~-~v~~p~l~~l~~~~~~~Ga~gaklSGsG~GG~v~al~~~~~~a~~~~~~l~~~~~~~~~ 315 (328)
T PTZ00298 238 -NLFRVGELMNANHDLCQKL-TVSCRELDSIVQTCRTYGALGAKMSGTGRGGLVVALAASEDQRDAIAKAVRARCPEAKF 315 (328)
T ss_pred -CHHHHHHHHHHHHHHHHHh-CCCcHHHHHHHHHHHhCCCceeEeccCCCCeEEEEEecchhhHHHHHHHHHHHhhhcCC
Confidence 4999999999999999864 789999999999999999999999999999999999976 6788899999888876543
No 14
>COG2605 Predicted kinase related to galactokinase and mevalonate kinase [General function prediction only]
Probab=99.98 E-value=1.5e-30 Score=237.06 Aligned_cols=212 Identities=20% Similarity=0.256 Sum_probs=168.1
Q ss_pred EEEEEEecCCCCCCCChHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhhh-hhCCCCCchhHHHHHhhcCCeEEEEecC
Q 018397 15 FNHINSLFFNLGSGLSSSTAFVCSSTVALMAAFGVEVPKKEIAQLTCECEQ-FIGTQSGGMDQAISIMAKSGFAELIDFN 93 (356)
Q Consensus 15 ~~i~i~s~IP~~~GLGSSaAl~va~~~al~~l~~~~ls~~el~~la~~~E~-~~g~~~G~~D~~~~~~Gg~~~~~~~d~~ 93 (356)
+++...+++|+|+|||||||++||++.|+..+-|..+++++||+.|+++|+ .++...|.|||+++.|||++ +++++
T Consensus 90 ~el~~~~D~P~GSGLGSSSa~vvaLl~a~~~~kg~~~~~~~LA~eAy~IER~~l~~~gG~QDqYaaA~GGFn---fMEf~ 166 (333)
T COG2605 90 IELHTQSDAPPGSGLGSSSAFVVALLNALHAWKGESLGPYELAREAYEIEREDLKIVGGKQDQYAAAFGGFN---FMEFR 166 (333)
T ss_pred eEEEEecCCCCCCCCCchHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhccccccccHHHHHhCCce---EEEEc
Confidence 999999999999999999999999999999999999999999999999998 78999999999999999987 66665
Q ss_pred C---CeeEEeecCC------CcEEEEEecCcchhhhhhcccchhhHHHHHHHHHHHHHHHhCCCchhhhhhhccchhhhh
Q 018397 94 P---IRTTDVQLPA------GGTFVVAHSLAESLKAITAASNYNNRVVECRLTAIVLAIKLGMKPQEAISKVKTLSDVEG 164 (356)
Q Consensus 94 ~---~~~~~~~~p~------~~~~ll~~s~~~~~~~~~~~~~~~~r~~e~~~a~~~l~~~~~~~~~~~~~~~~~Lr~v~~ 164 (356)
+ ..+.|+++.. ..+++|++|++.+... +++.++
T Consensus 167 ~~~~V~v~pL~i~~e~~~Ele~~~lL~yTGi~R~Ss------------------~V~~dQ-------------------- 208 (333)
T COG2605 167 GNGEVVVNPLRINRERTAELEARLLLYYTGITRQSS------------------EVIEDQ-------------------- 208 (333)
T ss_pred CCCcEEEeecccchhHHHHHHhceEEEEeccccchh------------------HHHHHH--------------------
Confidence 5 3566666543 4778888888743211 111111
Q ss_pred hhhhhhccCCCCCCcccccCCCCHHHHHHHhhhhhhhhhhcCCChhhHHhhhhhHHHHHHHhhHHhHHHHHHHHHHHHhc
Q 018397 165 LCVAFACKNGSSDPVFAVKEPYTALDIEKITEEKLTSIFANSSSSLDVLNAAKQYKLHQRAAHVYSEAKRVHAFKDTVSS 244 (356)
Q Consensus 165 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~i~E~~rv~~~~~al~~ 244 (356)
+.++...+. -..++.|-+. .-+.++.+++.+
T Consensus 209 --------------------------~~~~~~~~~---------------------~~~e~~~~mk--~~A~~~~~al~~ 239 (333)
T COG2605 209 --------------------------VRNVVDGDE---------------------ETLEALHEMK--ALAYEMKDALVR 239 (333)
T ss_pred --------------------------HHHhhcccH---------------------HHHHHHHHHH--HHHHHHHHHHHh
Confidence 111111000 0112222222 124467788887
Q ss_pred CCCchHHHHHHHHHHHHHHHHhhhh-cCCCChHHHHHHHHHHhCCCceeEEeccCCcceEEEEecCCcHHHHHHHHHH
Q 018397 245 NLSEEDKLKKLGDLMNDSHHSCSVL-YECSCPELEELVNVCRNNGALGARLTGAGWGGCVVALVKESIDSQFILNLKE 321 (356)
Q Consensus 245 ~~~~~~~~~~lg~lm~~sh~~lr~~-~~vs~peld~lv~~a~~~Ga~GaklsGaG~GG~vi~l~~~~~~~~~~~~l~~ 321 (356)
+| +..||++|+.+|+..+.+ -++|+|.+|.+++.|++.|++|+|++|||+||+++.+|+|++.++++++|++
T Consensus 240 nd-----~~~f~~~l~~gW~~KK~ls~~ISN~~IDriy~~A~~~GA~~gKl~GaG~gGFllf~~~p~k~~~l~r~l~~ 312 (333)
T COG2605 240 ND-----IPEFGQILDRGWEAKKKLSSRISNDAIDRIYELALKNGAYGGKLSGAGGGGFLLFFCDPSKRNELARALEK 312 (333)
T ss_pred cc-----hHHHHHHHHhHHHhhhhhccCcCcHHHHHHHHHHHhcCchhceeeccCCccEEEEEeCccchHHHHHHHHH
Confidence 74 999999999999998888 4799999999999999999999999999999999999999999999998865
No 15
>TIGR00549 mevalon_kin mevalonate kinase. Paracoccus exhibits two genes within the phosphomevalonate/mevalonate kinase family, one of which falls between trusted and noise cutoffs of this model. The degree of divergence is high, but if the trees created from this model are correct, the proper names of these genes have been swapped.
Probab=99.97 E-value=4.8e-30 Score=241.06 Aligned_cols=195 Identities=29% Similarity=0.365 Sum_probs=150.1
Q ss_pred cEEEEEEecCCCCCCCChHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhhh-hhCCCCCchhHHHHHhhcCCeEEEEec
Q 018397 14 LFNHINSLFFNLGSGLSSSTAFVCSSTVALMAAFGVEVPKKEIAQLTCECEQ-FIGTQSGGMDQAISIMAKSGFAELIDF 92 (356)
Q Consensus 14 g~~i~i~s~IP~~~GLGSSaAl~va~~~al~~l~~~~ls~~el~~la~~~E~-~~g~~~G~~D~~~~~~Gg~~~~~~~d~ 92 (356)
++++.++|+||.++|||||||+++|++.|++++++.++++++++++|.++|+ +.|.++| +|+++++||| +++++.
T Consensus 78 ~~~i~i~s~iP~g~GLGSSaa~~va~~~al~~~~~~~~~~~~l~~~a~~~E~~~~G~~sG-~D~~~~~~Gg---~~~~~~ 153 (273)
T TIGR00549 78 PLEIEIDSEIPPGRGLGSSAAVAVALIRALADYFGSELSKEELAKLANEAEKIAHGKPSG-IDTATSTYGG---PVYFEK 153 (273)
T ss_pred CEEEEEecCCCCCCCccHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCCch-HhHHHHhcCC---eEEEEc
Confidence 4999999999999999999999999999999999999999999999999998 6799988 5999999998 445554
Q ss_pred CCCeeEEeecCCCcEEEEEecCcchhhhhhcccchhhHHHHHHHHHHHHHHHhCCCchhhhhhhccchhhhhhhhhhhcc
Q 018397 93 NPIRTTDVQLPAGGTFVVAHSLAESLKAITAASNYNNRVVECRLTAIVLAIKLGMKPQEAISKVKTLSDVEGLCVAFACK 172 (356)
Q Consensus 93 ~~~~~~~~~~p~~~~~ll~~s~~~~~~~~~~~~~~~~r~~e~~~a~~~l~~~~~~~~~~~~~~~~~Lr~v~~~~~~~~g~ 172 (356)
... ..++..|.++.+++++|+.++++.... +.+.. +++.
T Consensus 154 ~~~-~~~~~~~~~~~lvl~~tg~~~~T~~~~---------------~~v~~---------------~~~~---------- 192 (273)
T TIGR00549 154 GEG-EFTKLISLDGYFVIADTGVSGSTKEAV---------------ARVRQ---------------LLER---------- 192 (273)
T ss_pred CCC-ceeeccCCCeEEEEEECCCCCcHHHHH---------------HHHHH---------------HHHh----------
Confidence 432 234444557899999999865433210 00000 0000
Q ss_pred CCCCCCcccccCCCCHHHHHHHhhhhhhhhhhcCCChhhHHhhhhhHHHHHHHhhHHhHHHHHHHHHHHHhcCCCchHHH
Q 018397 173 NGSSDPVFAVKEPYTALDIEKITEEKLTSIFANSSSSLDVLNAAKQYKLHQRAAHVYSEAKRVHAFKDTVSSNLSEEDKL 252 (356)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~i~E~~rv~~~~~al~~~~~~~~~~ 252 (356)
..+.+. ..++++ ..++.+++++|.++ |+
T Consensus 193 --------------~~~~~~---------------------------~~~~~~------~~~~~~~~~al~~~-----d~ 220 (273)
T TIGR00549 193 --------------FPELID---------------------------SIMDAI------GELTLEAKAALQDG-----DV 220 (273)
T ss_pred --------------CHHHHH---------------------------HHHHHH------HHHHHHHHHHHHhC-----CH
Confidence 000000 011111 13566778899876 49
Q ss_pred HHHHHHHHHHHHHhhhhcCCCChHHHHHHHHHHhCCCceeEEeccCCcceEEEE
Q 018397 253 KKLGDLMNDSHHSCSVLYECSCPELEELVNVCRNNGALGARLTGAGWGGCVVAL 306 (356)
Q Consensus 253 ~~lg~lm~~sh~~lr~~~~vs~peld~lv~~a~~~Ga~GaklsGaG~GG~vi~l 306 (356)
+.||++|+++|..+++ +++++|++|+|++.+++.|++|+||||||+|||+++|
T Consensus 221 ~~lg~l~~~~~~~l~~-~~vs~p~l~~l~~~~~~~Ga~gaklsGaG~GG~~i~l 273 (273)
T TIGR00549 221 ESLGELMNINQGLLKA-LGVSHPKLDQLVETARKAGALGAKLTGAGGGGCMIAL 273 (273)
T ss_pred HHHHHHHHHHHHHHHH-cCCCcHHHHHHHHHHHHCCCceeeeccCCCCceEEeC
Confidence 9999999999999876 4899999999999999999999999999999999986
No 16
>KOG1511 consensus Mevalonate kinase MVK/ERG12 [Lipid transport and metabolism]
Probab=99.97 E-value=2e-29 Score=234.35 Aligned_cols=242 Identities=23% Similarity=0.283 Sum_probs=177.7
Q ss_pred hhhhcCCc----EEEEEEecCCCCCCCChHHHHHHHHHHHHHHHhCCCCCH--------H--H-HHHHHHHhhh-hhCCC
Q 018397 7 VIITKFQL----FNHINSLFFNLGSGLSSSTAFVCSSTVALMAAFGVEVPK--------K--E-IAQLTCECEQ-FIGTQ 70 (356)
Q Consensus 7 ~~~~~~~g----~~i~i~s~IP~~~GLGSSaAl~va~~~al~~l~~~~ls~--------~--e-l~~la~~~E~-~~g~~ 70 (356)
-+|...+| +.+.++|++|+|+|||||||++|+++.++..++|.-.++ . + +-++|.+.|. ++|.|
T Consensus 120 ~l~~~~~g~lp~~~v~v~SelP~GaGLGSSAa~sv~lAtall~~~g~i~~p~~~~~~~e~~l~Li~~WAf~gE~~iHGtp 199 (397)
T KOG1511|consen 120 GLCLRAPGTLPALTVVVDSELPLGAGLGSSAAISVALATALLRLAGLIPPPGSNLSLAENDLALINKWAFEGEKCIHGTP 199 (397)
T ss_pred HhhhcccCCCcceEEEEeccCCCcCCcchhHHHHHHHHHHHHHHcccCCCCcchhccccchHHHHHHHHhccceeecCCC
Confidence 45666677 999999999999999999999999999999988753222 3 2 4588999998 77999
Q ss_pred CCchhHHHHHhhcCCeEEEEecCCC-eeEEeecCCCcEEEEEecCcchhhhhhcccchhhHHHHHHHHHHHHHHHhCCCc
Q 018397 71 SGGMDQAISIMAKSGFAELIDFNPI-RTTDVQLPAGGTFVVAHSLAESLKAITAASNYNNRVVECRLTAIVLAIKLGMKP 149 (356)
Q Consensus 71 ~G~~D~~~~~~Gg~~~~~~~d~~~~-~~~~~~~p~~~~~ll~~s~~~~~~~~~~~~~~~~r~~e~~~a~~~l~~~~~~~~ 149 (356)
+| .|+++|+||| .+.|++. .++.+...+.++++++||++|++|...+.. + +.+..+
T Consensus 200 SG-iDnaV~t~Gg-----~i~f~kg~~~~~Lk~~~~L~illtnTrv~RnTk~lVa~-----V-------r~~~~k----- 256 (397)
T KOG1511|consen 200 SG-IDNAVCTYGG-----LISFKKGVEIESLKHLPPLRILLTNTRVPRNTKALVAG-----V-------RELLEK----- 256 (397)
T ss_pred cc-cchhhhccCc-----eEEeecCccceecccCCCceEEEEccccCccHHHHHHH-----H-------HHHHHh-----
Confidence 86 9999999999 4555553 666666656799999999999987765311 1 111111
Q ss_pred hhhhhhhccchhhhhhhhhhhccCCCCCCcccccCCCCHHHHHHHhhhhhhhhhhcCCChhhHHhhhhhHHHHHHHhhHH
Q 018397 150 QEAISKVKTLSDVEGLCVAFACKNGSSDPVFAVKEPYTALDIEKITEEKLTSIFANSSSSLDVLNAAKQYKLHQRAAHVY 229 (356)
Q Consensus 150 ~~~~~~~~~Lr~v~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~i 229 (356)
++++++.. +.-+..+
T Consensus 257 -------------------------------------------------fPevi~~i---------------~~aid~i- 271 (397)
T KOG1511|consen 257 -------------------------------------------------FPEVIKAI---------------FDAIDEI- 271 (397)
T ss_pred -------------------------------------------------hhHHHHHH---------------HHHHHHH-
Confidence 11111111 1111111
Q ss_pred hHHHHHHHHHHHHhcC-C-CchHHHHHHHHHHHHHHHHhhhhcCCCChHHHHHHHHHHhCCCceeEEeccCCcceEEEEe
Q 018397 230 SEAKRVHAFKDTVSSN-L-SEEDKLKKLGDLMNDSHHSCSVLYECSCPELEELVNVCRNNGALGARLTGAGWGGCVVALV 307 (356)
Q Consensus 230 ~E~~rv~~~~~al~~~-~-~~~~~~~~lg~lm~~sh~~lr~~~~vs~peld~lv~~a~~~Ga~GaklsGaG~GG~vi~l~ 307 (356)
..+++.++.+. + .....-+.+.++|..||..|..+ |||+|.+|.++..+++.| +.+||||||+|||+++|+
T Consensus 272 -----s~ea~~il~~e~~~~~~~~Eq~L~eLi~iNq~LL~al-GVsH~~le~v~~~t~k~g-i~sKLTGAGgGGc~itlL 344 (397)
T KOG1511|consen 272 -----SLEAVWILQRENDEFSSPKEQKLEELIRINQDLLDAL-GVSHPSLELVCTTTRKLG-IHSKLTGAGGGGCVITLL 344 (397)
T ss_pred -----HHHHHHHHhcccccCCCcHHHHHHHHHHHhHHHHHHh-CCCcHHHHHHHHHHHHhC-cceecccCCCCceEEEEE
Confidence 22344445532 1 11112225999999999999877 999999999999999998 688999999999999999
Q ss_pred cCCcHHHHHHHHHHHHHhcccCCCcccCCCCcceEEEeecCC-ceeecc
Q 018397 308 KESIDSQFILNLKEQFYQSRIDRGVINNNDLGLYVFASKPSS-GAAKFK 355 (356)
Q Consensus 308 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~-Ga~v~~ 355 (356)
+++..++.++.+++.....+| .+|.+.-+. |+++.+
T Consensus 345 ~~~~~qe~i~~~ke~L~s~gf------------~v~~t~lGG~G~~v~s 381 (397)
T KOG1511|consen 345 KPGTEQEQIDKWKEELESHGF------------EVFETELGGPGVSVHS 381 (397)
T ss_pred CCCCchHHHHHHHHHHHhcCc------------ceeeccCCCCceEEEe
Confidence 998888899999999887765 688887776 888864
No 17
>PRK03926 mevalonate kinase; Provisional
Probab=99.97 E-value=8.2e-29 Score=236.13 Aligned_cols=225 Identities=27% Similarity=0.287 Sum_probs=166.8
Q ss_pred CcEEEEEEecCCCCCCCChHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhhh-hhCCCCCchhHHHHHhhcCCeEEEEe
Q 018397 13 QLFNHINSLFFNLGSGLSSSTAFVCSSTVALMAAFGVEVPKKEIAQLTCECEQ-FIGTQSGGMDQAISIMAKSGFAELID 91 (356)
Q Consensus 13 ~g~~i~i~s~IP~~~GLGSSaAl~va~~~al~~l~~~~ls~~el~~la~~~E~-~~g~~~G~~D~~~~~~Gg~~~~~~~d 91 (356)
+|++++|+++||+++|||||||+++|++.+++++++.++++++++++|.++|+ +.|.++| +|++++++||. ++..
T Consensus 74 ~g~~i~i~~~iP~~~GLGSSsA~~~a~~~al~~~~~~~l~~~~l~~la~~~E~~~~G~~sg-~D~~~~~~Gg~---~~~~ 149 (302)
T PRK03926 74 DGVTVSITSQIPVGSGLGSSAAVTVATIGALNRLLGLGLSLEEIAKLGHKVELLVQGAASP-TDTYVSTMGGF---VTIP 149 (302)
T ss_pred CCeEEEEecCCCCCCCccHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHcCCCch-HHHHHHhcCCe---EEEc
Confidence 58999999999999999999999999999999999999999999999999998 6788776 79999999984 3333
Q ss_pred cCCCeeEEeecCCCcEEEEEecCcchhhhhhcccchhhHHHHHHHHHHHHHHHhCCCchhhhhhhccchhhhhhhhhhhc
Q 018397 92 FNPIRTTDVQLPAGGTFVVAHSLAESLKAITAASNYNNRVVECRLTAIVLAIKLGMKPQEAISKVKTLSDVEGLCVAFAC 171 (356)
Q Consensus 92 ~~~~~~~~~~~p~~~~~ll~~s~~~~~~~~~~~~~~~~r~~e~~~a~~~l~~~~~~~~~~~~~~~~~Lr~v~~~~~~~~g 171 (356)
... ++++| ++.+++++|+.+.+|... .+.++ .+++.
T Consensus 150 ~~~----~l~~~-~~~~vl~~~~~~~sT~~~---------------~~~~~---------------~~~~~--------- 185 (302)
T PRK03926 150 DRK----KLPFP-ECGIVVGYTGSSGSTKEL---------------VANVR---------------KLKEE--------- 185 (302)
T ss_pred CCC----cCCCC-CceEEEEECCCCCcHHHH---------------HHHHH---------------HHHHh---------
Confidence 222 44433 788999999986543221 00010 00100
Q ss_pred cCCCCCCcccccCCCCHHHHHHHhhhhhhhhhhcCCChhhHHhhhhhHHHHHHHhhHHhHHHHHHHHHHHHhcCCCchHH
Q 018397 172 KNGSSDPVFAVKEPYTALDIEKITEEKLTSIFANSSSSLDVLNAAKQYKLHQRAAHVYSEAKRVHAFKDTVSSNLSEEDK 251 (356)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~i~E~~rv~~~~~al~~~~~~~~~ 251 (356)
.+ +.+.. ...+..+ -+.++.+++.++ |
T Consensus 186 --------------~~-~~~~~---------------------------~~~~~~~------~~~~~~~al~~~-----d 212 (302)
T PRK03926 186 --------------YP-ELIEP---------------------------ILSSIGK------ISEKGEELILSG-----D 212 (302)
T ss_pred --------------CH-HHHHH---------------------------HHHHHHH------HHHHHHHHHhcC-----C
Confidence 00 00000 0011111 122345677766 4
Q ss_pred HHHHHHHHHHHHHHhhhhcCCCChHHHHHHHHHHhCCCceeEEeccCCcceEEEEecCCcHHHHHHHHHHHHHhcccCCC
Q 018397 252 LKKLGDLMNDSHHSCSVLYECSCPELEELVNVCRNNGALGARLTGAGWGGCVVALVKESIDSQFILNLKEQFYQSRIDRG 331 (356)
Q Consensus 252 ~~~lg~lm~~sh~~lr~~~~vs~peld~lv~~a~~~Ga~GaklsGaG~GG~vi~l~~~~~~~~~~~~l~~~~~~~~~~~~ 331 (356)
++.|+++|+++|..++ .+++++|+++++++.+++.|++|+||||+|+|||+++|++++.++++.+.+++.
T Consensus 213 ~~~l~~~~~~~~~~~~-~~~~~~p~l~~l~~~~~~~ga~ga~lSGaG~Gg~v~~l~~~~~~~~~~~~~~~~--------- 282 (302)
T PRK03926 213 YVSLGELMNINQGLLD-ALGVSTKELSELIYAARTAGALGAKITGAGGGGCMVALAAPEKQSEVATAIKIA--------- 282 (302)
T ss_pred HHHHHHHHHHHHHHHH-hcCCCCHHHHHHHHHHHhCCCceeeeccCCCCCEEEEEeccccHHHHHHHHHhc---------
Confidence 9999999999997654 468999999999999999999999999999999999999887778877777542
Q ss_pred cccCCCCcceEEEeecCC-ceeecc
Q 018397 332 VINNNDLGLYVFASKPSS-GAAKFK 355 (356)
Q Consensus 332 ~~~~~~~~~~~~~~~p~~-Ga~v~~ 355 (356)
...++++++.+ |+++..
T Consensus 283 -------~~~~~~~~~~~~G~~i~~ 300 (302)
T PRK03926 283 -------GGKPIITKITDEGLRIEE 300 (302)
T ss_pred -------CCeEEEEecCCCeeEEEe
Confidence 12578888864 999864
No 18
>TIGR01220 Pmev_kin_Gr_pos phosphomevalonate kinase, ERG8-type, Gram-positive branch. This enzyme is part of the mevalonate pathway, one of two alternative pathways for the biosynthesis of IPP. In an example of nonorthologous gene displacement, two different types of phosphomevalonate kinase are found - the animal type and this ERG8 type. This model represents the low GC Gram-positive organism forms of the ERG8 type of phosphomevalonate kinase.
Probab=99.97 E-value=8.8e-29 Score=240.89 Aligned_cols=218 Identities=17% Similarity=0.191 Sum_probs=160.1
Q ss_pred CCcEEEEEEecCCCC----CCCChHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhhhh-hCCCCCchhHHHHHhhcCCe
Q 018397 12 FQLFNHINSLFFNLG----SGLSSSTAFVCSSTVALMAAFGVEVPKKEIAQLTCECEQF-IGTQSGGMDQAISIMAKSGF 86 (356)
Q Consensus 12 ~~g~~i~i~s~IP~~----~GLGSSaAl~va~~~al~~l~~~~ls~~el~~la~~~E~~-~g~~~G~~D~~~~~~Gg~~~ 86 (356)
.+||++.|.|+||++ +|||||||++||++.|++.+++.++++++++++|..+|+. .|.++ ++|+++++|||+
T Consensus 98 ~~g~~~~i~s~ip~~~g~k~GLGSSAA~~Va~~~Al~~~~~~~l~~~~l~~lA~~~E~~~~g~~s-g~D~~a~~~GG~-- 174 (358)
T TIGR01220 98 LPALHLSVSSRLDEADGRKYGLGSSGAVTVATVKALNAFYDLELSNDEIFKLAMLATAELQPKGS-CGDIAASTYGGW-- 174 (358)
T ss_pred CCceEEEEecCCCCcCCCCCCccHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhhhCCCCC-cchhhhhhhCCE--
Confidence 468999999999994 6999999999999999999999999999999999999984 45544 579999999994
Q ss_pred EEEEecC----------------------CCeeEEeecCCCcEEEEEecCcchhhhhhcccchhhHHHHHHHHHHHHHHH
Q 018397 87 AELIDFN----------------------PIRTTDVQLPAGGTFVVAHSLAESLKAITAASNYNNRVVECRLTAIVLAIK 144 (356)
Q Consensus 87 ~~~~d~~----------------------~~~~~~~~~p~~~~~ll~~s~~~~~~~~~~~~~~~~r~~e~~~a~~~l~~~ 144 (356)
+.+-++. +..++++++|++++|++++|+.+++|.... .++ .+
T Consensus 175 i~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~l~~~~~~~l~v~~tg~~~~T~~~v-----~~V----------~~- 238 (358)
T TIGR01220 175 IAYSTFDHDWVLQLARRVGVDRTLKAPWPGLSIRPLPAPKGLTLLIGWTGSPASTASLV-----SDV----------HR- 238 (358)
T ss_pred EEEecCCHHHHhhhhhccchhhhhccCCCccceeECCCCCCCEEEEEeCCCCcCcHHHH-----HHH----------HH-
Confidence 2222221 234677888888999999999976543321 000 00
Q ss_pred hCCCchhhhhhhccchhhhhhhhhhhccCCCCCCcccccCCCCHHHHHHHhhhhhhhhhhcCCChhhHHhhhhhHHHHHH
Q 018397 145 LGMKPQEAISKVKTLSDVEGLCVAFACKNGSSDPVFAVKEPYTALDIEKITEEKLTSIFANSSSSLDVLNAAKQYKLHQR 224 (356)
Q Consensus 145 ~~~~~~~~~~~~~~Lr~v~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r 224 (356)
+++ ..+ +.++ ...++
T Consensus 239 --------------~~~-----------------------~~~-~~~~---------------------------~~l~~ 253 (358)
T TIGR01220 239 --------------RKW-----------------------RGS-ASYQ---------------------------RFLET 253 (358)
T ss_pred --------------Hhh-----------------------cCh-HHHH---------------------------HHHHH
Confidence 000 000 0000 01122
Q ss_pred HhhHHhHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHhhhh-----cCCCChHHHHHHHHHHhCCCceeEEeccCC
Q 018397 225 AAHVYSEAKRVHAFKDTVSSNLSEEDKLKKLGDLMNDSHHSCSVL-----YECSCPELEELVNVCRNNGALGARLTGAGW 299 (356)
Q Consensus 225 ~~~~i~E~~rv~~~~~al~~~~~~~~~~~~lg~lm~~sh~~lr~~-----~~vs~peld~lv~~a~~~Ga~GaklsGaG~ 299 (356)
... -+.++.++|+.+| ++.||++|+++|..|+.+ .++++|+++.|++.+++.|+ |+|+||||+
T Consensus 254 ~~~------i~~~~~~al~~~d-----~~~lg~~~~~~~~lL~~l~~~~~~~vs~~~l~~li~~a~~~ga-~aKlsGAGg 321 (358)
T TIGR01220 254 STD------CVESAITAFETGD-----ITSLQKEIRRNRQELARLDDEVGVGIETEKLKALCDAAEAYGG-AAKPSGAGG 321 (358)
T ss_pred HHH------HHHHHHHHHHhCC-----HHHHHHHHHHHHHHHHHhhcccCCCcCCHHHHHHHHHHhhcCc-eecCCCCCC
Confidence 221 2446678888764 999999999999999976 47999999999999999998 999999999
Q ss_pred cceEEEEecCCcHHHHHHHHHHHHHhccc
Q 018397 300 GGCVVALVKESIDSQFILNLKEQFYQSRI 328 (356)
Q Consensus 300 GG~vi~l~~~~~~~~~~~~l~~~~~~~~~ 328 (356)
|||+++|++++. ..+.|.+.+.+.++
T Consensus 322 Gg~~ial~~~~~---~~~~~~~~~~~~G~ 347 (358)
T TIGR01220 322 GDCGIAILDAEA---DITHVRQRWETAGI 347 (358)
T ss_pred cCEEEEEeCCch---hHHHHHHHHHHCCC
Confidence 999999997532 23445556655554
No 19
>PRK13412 fkp bifunctional fucokinase/L-fucose-1-P-guanylyltransferase; Provisional
Probab=99.96 E-value=2.5e-28 Score=257.58 Aligned_cols=213 Identities=16% Similarity=0.152 Sum_probs=160.8
Q ss_pred CcEEEEEEecCCCCCCCChHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhhhhhCCCCCchhHHHHHhhcCCeEEEEec
Q 018397 13 QLFNHINSLFFNLGSGLSSSTAFVCSSTVALMAAFGVEVPKKEIAQLTCECEQFIGTQSGGMDQAISIMAKSGFAELIDF 92 (356)
Q Consensus 13 ~g~~i~i~s~IP~~~GLGSSaAl~va~~~al~~l~~~~ls~~el~~la~~~E~~~g~~~G~~D~~~~~~Gg~~~~~~~d~ 92 (356)
.|+++.|.|+||+|+|||||||++||++.|++.+++.++++++++++|..+|+.++.++|++||+++++||. .++++
T Consensus 725 ~G~~I~i~s~IP~GsGLGSSAAlavA~l~AL~~~~g~~ls~~ela~~A~~~E~~lhg~~g~qDq~~a~~GG~---~~i~~ 801 (974)
T PRK13412 725 SGIEITLLAAIPAGSGLGTSSILAATVLGAISDFCGLAWDKNEICNRTLVLEQLLTTGGGWQDQYGGVLPGV---KLLQT 801 (974)
T ss_pred CCeEEEEecCCCCCCCccHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHCCCCchhhhhhHhcCCe---EEEEe
Confidence 589999999999999999999999999999999999999999999999999998888889999999999994 45554
Q ss_pred CC-C----eeEEeecCC------CcEEEEEecCcchhhhhhcccchhhHHHHHHHHHHHHHHHhCCCchhhhhhhccchh
Q 018397 93 NP-I----RTTDVQLPA------GGTFVVAHSLAESLKAITAASNYNNRVVECRLTAIVLAIKLGMKPQEAISKVKTLSD 161 (356)
Q Consensus 93 ~~-~----~~~~~~~p~------~~~~ll~~s~~~~~~~~~~~~~~~~r~~e~~~a~~~l~~~~~~~~~~~~~~~~~Lr~ 161 (356)
.+ . .+.+++.+. +-+++|++|++++.+.... . ++.... ..
T Consensus 802 ~~~~~~~~~v~~L~~~~~~~~eLe~~LlL~yTGitR~T~~iV--------~------~Vv~~~---------------~~ 852 (974)
T PRK13412 802 GAGFAQSPLVRWLPDSLFTQPEYRDCHLLYYTGITRTAKGIL--------A------EIVRSM---------------FL 852 (974)
T ss_pred cCCcccCcceeecCcchhhhhhccCcEEEEECCCeeeHHHHH--------H------HHHHHH---------------Hh
Confidence 43 1 234444332 3479999999865433211 0 000000 00
Q ss_pred hhhhhhhhhccCCCCCCcccccCCCCHHHHHHHhhhhhhhhhhcCCChhhHHhhhhhHHHHHHHhhHHhHHHHHHHHHHH
Q 018397 162 VEGLCVAFACKNGSSDPVFAVKEPYTALDIEKITEEKLTSIFANSSSSLDVLNAAKQYKLHQRAAHVYSEAKRVHAFKDT 241 (356)
Q Consensus 162 v~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~i~E~~rv~~~~~a 241 (356)
.. +... .+.+++.. -+.++.+|
T Consensus 853 ------------------------~~-~~~~---------------------------~~l~~ig~------La~ea~~A 874 (974)
T PRK13412 853 ------------------------NS-TAHL---------------------------QLLHEMKA------HALDMYEA 874 (974)
T ss_pred ------------------------Cc-HHHH---------------------------HHHHHHHH------HHHHHHHH
Confidence 00 0000 01122221 14456788
Q ss_pred HhcCCCchHHHHHHHHHHHHHHHHhhhh-cCCCChHHHHHHHHHHhCCCceeEEeccCCcceEEEEecC-CcHHHHHHHH
Q 018397 242 VSSNLSEEDKLKKLGDLMNDSHHSCSVL-YECSCPELEELVNVCRNNGALGARLTGAGWGGCVVALVKE-SIDSQFILNL 319 (356)
Q Consensus 242 l~~~~~~~~~~~~lg~lm~~sh~~lr~~-~~vs~peld~lv~~a~~~Ga~GaklsGaG~GG~vi~l~~~-~~~~~~~~~l 319 (356)
|.++| ++.||++|+++|..++.+ -++|+|++|.|++.|++ |++|+|+||||+|||+++|+++ +.++++.+.|
T Consensus 875 Le~gD-----~~~LG~LMn~~w~ll~~L~~GVSnp~LD~Li~~A~~-gAlGaKLTGAGGGGcvI~Lak~~~~a~~I~~~L 948 (974)
T PRK13412 875 IQRGE-----FEEFGRLVGKTWEQNKALDSGTNPAAVEAIIELIKD-YTLGYKLPGAGGGGYLYMVAKDPGAAERIRKIL 948 (974)
T ss_pred HHcCC-----HHHHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHc-CCcEEEecccCcccEEEEEECChhhHHHHHHHH
Confidence 88774 999999999999998877 58999999999999976 7999999999999999999954 5677777777
Q ss_pred HH
Q 018397 320 KE 321 (356)
Q Consensus 320 ~~ 321 (356)
++
T Consensus 949 ~~ 950 (974)
T PRK13412 949 TE 950 (974)
T ss_pred Hh
Confidence 54
No 20
>PLN02451 homoserine kinase
Probab=99.94 E-value=1.4e-24 Score=211.60 Aligned_cols=225 Identities=20% Similarity=0.248 Sum_probs=168.3
Q ss_pred CcEEEEEEecCCCCCCCChHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhhh-hhCCCCCchhHHH-HHhhcCCeEEEE
Q 018397 13 QLFNHINSLFFNLGSGLSSSTAFVCSSTVALMAAFGVEVPKKEIAQLTCECEQ-FIGTQSGGMDQAI-SIMAKSGFAELI 90 (356)
Q Consensus 13 ~g~~i~i~s~IP~~~GLGSSaAl~va~~~al~~l~~~~ls~~el~~la~~~E~-~~g~~~G~~D~~~-~~~Gg~~~~~~~ 90 (356)
+|+++.|.++||+++|||||||+++|++.+++++++.+++++++++++.++|. +.|. -+|+++ +++||+ .+.
T Consensus 133 ~gv~I~i~k~IP~g~GLGSSaA~avA~l~aln~l~g~~ls~~eL~~la~~~E~~v~g~---h~Dnva~a~~GG~---v~~ 206 (370)
T PLN02451 133 VGLSLSLHKGLPLGSGLGSSAASAAAAAVAVNELFGSPLGKDDLVLAGLESEAKVSGY---HADNIAPALMGGF---VLI 206 (370)
T ss_pred CCEEEEEeCCCCCCCCccHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhchhcCC---CccchhHhhcCCE---EEE
Confidence 58999999999999999999999999999999999999999999999999997 4453 279986 689984 344
Q ss_pred e-cCCCeeEEeecC--CCcEEEEEecCcchhhhhhcccchhhHHHHHHHHHHHHHHHhCCCchhhhhhhccchhhhhhhh
Q 018397 91 D-FNPIRTTDVQLP--AGGTFVVAHSLAESLKAITAASNYNNRVVECRLTAIVLAIKLGMKPQEAISKVKTLSDVEGLCV 167 (356)
Q Consensus 91 d-~~~~~~~~~~~p--~~~~~ll~~s~~~~~~~~~~~~~~~~r~~e~~~a~~~l~~~~~~~~~~~~~~~~~Lr~v~~~~~ 167 (356)
. ..+....++++| .+|.+++++|+.+.+|.. +.+.++..
T Consensus 207 ~~~~~~~~~~~~~p~~~~~~~Vlv~P~~~~sT~~---------------ar~~lp~~----------------------- 248 (370)
T PLN02451 207 RSYEPLHLIPLRFPSAKDLFFVLVSPDFEAPTKK---------------MRAALPKE----------------------- 248 (370)
T ss_pred EecCCCeEEEeecCCCCCeEEEEEcCCCCccHHH---------------HHHHHhhh-----------------------
Confidence 3 334456666666 579999999987443221 11111110
Q ss_pred hhhccCCCCCCcccccCCCCHHHHHHHhhhhhhhhhhcCCChhhHHhhhhhHHHHHHHhhHHhHHHHHHHHHHHHhcCCC
Q 018397 168 AFACKNGSSDPVFAVKEPYTALDIEKITEEKLTSIFANSSSSLDVLNAAKQYKLHQRAAHVYSEAKRVHAFKDTVSSNLS 247 (356)
Q Consensus 168 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~i~E~~rv~~~~~al~~~~~ 247 (356)
+.. . .+ +....|+..++.++.++
T Consensus 249 ------------------~~~---------------------------------~---~~-v~~~~~~~~l~~al~~~-- 271 (370)
T PLN02451 249 ------------------IPM---------------------------------K---HH-VWNCSQAAALVAAILQG-- 271 (370)
T ss_pred ------------------cch---------------------------------h---hH-HHHHHHHHHHHHHHHcC--
Confidence 000 0 00 00113344566788876
Q ss_pred chHHHHHHHHHHHHH--HHHhhhhcCCCChHHHHHHHHHHhCCCceeEEeccCCcceEEEEecC-CcHHHHHHHHHHHHH
Q 018397 248 EEDKLKKLGDLMNDS--HHSCSVLYECSCPELEELVNVCRNNGALGARLTGAGWGGCVVALVKE-SIDSQFILNLKEQFY 324 (356)
Q Consensus 248 ~~~~~~~lg~lm~~s--h~~lr~~~~vs~peld~lv~~a~~~Ga~GaklsGaG~GG~vi~l~~~-~~~~~~~~~l~~~~~ 324 (356)
|++.++++|++. |+..+. .++|+++++++.+++.|++|++|||+| +|+++|++. +.++++.+.+++.|.
T Consensus 272 ---d~~~l~~~m~nD~~~e~~r~---~~~P~l~~l~~~~~~~GA~ga~mSGSG--ptvfal~~~~~~a~~i~~~l~~~~~ 343 (370)
T PLN02451 272 ---DAVLLGEALSSDKIVEPTRA---PLIPGMEAVKKAALEAGAYGCTISGAG--PTAVAVIDDEEKGEEVGERMVEAFR 343 (370)
T ss_pred ---CHHHHHHHHHHHHHhHHHHh---hhCccHHHHHHHHHHCCCeEEEEEccc--hheEEEEcCHHHHHHHHHHHHHHHH
Confidence 499999999865 555543 379999999999999999999999877 899999975 478899999988886
Q ss_pred hcccCCCcccCCCCcceEEEeecCC-ceeecc
Q 018397 325 QSRIDRGVINNNDLGLYVFASKPSS-GAAKFK 355 (356)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~~~~~p~~-Ga~v~~ 355 (356)
+... ....++++++.+ |+++.+
T Consensus 344 ~~~~---------~~~~~~~~~~d~~Ga~v~~ 366 (370)
T PLN02451 344 KAGN---------LKATASVKKLDRVGARLVE 366 (370)
T ss_pred HhcC---------CCceEEEeccCCCCeEEEe
Confidence 5432 467899999987 999864
No 21
>COG0083 ThrB Homoserine kinase [Amino acid transport and metabolism]
Probab=99.92 E-value=2.3e-23 Score=194.84 Aligned_cols=218 Identities=26% Similarity=0.260 Sum_probs=163.7
Q ss_pred cEEEEEEecCCCCCCCChHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhhhhhCCCCCchhHH-HHHhhcCCeEEEEec
Q 018397 14 LFNHINSLFFNLGSGLSSSTAFVCSSTVALMAAFGVEVPKKEIAQLTCECEQFIGTQSGGMDQA-ISIMAKSGFAELIDF 92 (356)
Q Consensus 14 g~~i~i~s~IP~~~GLGSSaAl~va~~~al~~l~~~~ls~~el~~la~~~E~~~g~~~G~~D~~-~~~~Gg~~~~~~~d~ 92 (356)
++++.++++||.++|||||+|.+||.+.+++++++.+++++++.+++..+|. + -||+ .+++||. .+...
T Consensus 77 ~~~i~i~k~IP~~rGLGSSaAsiVAal~aan~l~~~~L~~~~ll~~a~~~Eg-----H--pDNVapa~lGG~---~l~~~ 146 (299)
T COG0083 77 GVKIRIEKGIPLGRGLGSSAASIVAALAAANELAGLPLSKEELLQLALEIEG-----H--PDNVAPAVLGGL---VLVEE 146 (299)
T ss_pred cEEEEEEcCCCCCCCCcHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhcC-----C--CchHHHHhhCCE---EEEee
Confidence 3999999999999999999999999999999999999999999999999993 1 4776 4899994 23333
Q ss_pred -CCCeeEEeecCCCcEEEEEecCcchhhhhhcccchhhHHHHHHHHHHHHHHHhCCCchhhhhhhccchhhhhhhhhhhc
Q 018397 93 -NPIRTTDVQLPAGGTFVVAHSLAESLKAITAASNYNNRVVECRLTAIVLAIKLGMKPQEAISKVKTLSDVEGLCVAFAC 171 (356)
Q Consensus 93 -~~~~~~~~~~p~~~~~ll~~s~~~~~~~~~~~~~~~~r~~e~~~a~~~l~~~~~~~~~~~~~~~~~Lr~v~~~~~~~~g 171 (356)
.+....++++|.+|+++++.|+.+-+|. .++++|++.
T Consensus 147 ~~~~~~~~v~~~~~~~~v~~iP~~e~sT~---------------~aR~vLP~~--------------------------- 184 (299)
T COG0083 147 ESGIISVKVPFPSDLKLVVVIPNFEVSTA---------------EARKVLPKS--------------------------- 184 (299)
T ss_pred cCCceEEEccCCcceEEEEEeCCccccHH---------------HHHHhcccc---------------------------
Confidence 4466777888889999999998743221 223333332
Q ss_pred cCCCCCCcccccCCCCHHHHHHHhhhhhhhhhhcCCChhhHHhhhhhHHHHHHHhhHHhHHHHHHHHHHHHhcCCCchHH
Q 018397 172 KNGSSDPVFAVKEPYTALDIEKITEEKLTSIFANSSSSLDVLNAAKQYKLHQRAAHVYSEAKRVHAFKDTVSSNLSEEDK 251 (356)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~i~E~~rv~~~~~al~~~~~~~~~ 251 (356)
|++++. +....|+.-++.||.++|
T Consensus 185 --------------~~~~da-------------------------------------V~n~s~~a~lv~al~~~~----- 208 (299)
T COG0083 185 --------------YSRKDA-------------------------------------VFNLSRAALLVAALLEGD----- 208 (299)
T ss_pred --------------CCHHHH-------------------------------------HHHHHHHHHHHHHHHcCC-----
Confidence 222111 222356677889999874
Q ss_pred HHHHHHHHHH-HHHHhhhhcCCCChHHHHHHHHHHhCCCceeEEeccCCcceEEEEecCCcHHHHHHHHHHHHHhcccCC
Q 018397 252 LKKLGDLMND-SHHSCSVLYECSCPELEELVNVCRNNGALGARLTGAGWGGCVVALVKESIDSQFILNLKEQFYQSRIDR 330 (356)
Q Consensus 252 ~~~lg~lm~~-sh~~lr~~~~vs~peld~lv~~a~~~Ga~GaklsGaG~GG~vi~l~~~~~~~~~~~~l~~~~~~~~~~~ 330 (356)
.+.+..+|.+ -|+.+|.. ..|.++++.+.+.+.|++|+-+|||| +++++++++...+...+.+ +.++++.+
T Consensus 209 ~~l~~~~~~D~ihepyR~~---L~P~~~~v~~~a~~~gA~g~~lSGAG--PTi~al~~~~~~e~~~~~~-~~~~~~~~-- 280 (299)
T COG0083 209 PELLRAMMKDVIHEPYRAK---LVPGYAEVREAALEAGALGATLSGAG--PTVFALADESDAEKAAALL-EELYEQGI-- 280 (299)
T ss_pred HHHHHHHhccccchhhhhh---hCccHHHHHHHHhhCCceEEEEecCC--CeEEEEeccchhhHHHHHH-HHHHHhCC--
Confidence 8888888886 58888877 58999999999999999999999999 9999999876344454445 45545443
Q ss_pred CcccCCCCcceEE-EeecCCceeecc
Q 018397 331 GVINNNDLGLYVF-ASKPSSGAAKFK 355 (356)
Q Consensus 331 ~~~~~~~~~~~~~-~~~p~~Ga~v~~ 355 (356)
+..++ ...+++|++++.
T Consensus 281 --------~~~~~~~~~~~~G~~~v~ 298 (299)
T COG0083 281 --------KGRVHILALDSDGARVVE 298 (299)
T ss_pred --------cceEEEEeecCCcceEec
Confidence 44455 445567987763
No 22
>PRK01212 homoserine kinase; Provisional
Probab=99.92 E-value=4.2e-23 Score=196.76 Aligned_cols=219 Identities=23% Similarity=0.251 Sum_probs=161.6
Q ss_pred CcEEEEEEecCCCCCCCChHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhhhhhCCCCCchhHHHHHhhcCCeEEEE-e
Q 018397 13 QLFNHINSLFFNLGSGLSSSTAFVCSSTVALMAAFGVEVPKKEIAQLTCECEQFIGTQSGGMDQAISIMAKSGFAELI-D 91 (356)
Q Consensus 13 ~g~~i~i~s~IP~~~GLGSSaAl~va~~~al~~l~~~~ls~~el~~la~~~E~~~g~~~G~~D~~~~~~Gg~~~~~~~-d 91 (356)
+|++|.|.++||.++|||||||.++|++.+++++++.+++.++++++|.++|. + ..|...+++||. .+. +
T Consensus 80 ~~~~I~i~k~IP~~~GLGssSa~aaA~l~al~~l~~~~l~~~eL~~~a~~~e~-----~-~ddv~~~l~GG~---~~~~~ 150 (301)
T PRK01212 80 PGLRIELEKNIPLGRGLGSSAASIVAGLVAANELAGLPLSKEELLQLATEGEG-----H-PDNVAPALLGGL---VLALE 150 (301)
T ss_pred CCeEEEEEeCCCCCCCCcHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcC-----C-HHHHHHHHhCCE---EEEEE
Confidence 58999999999999999999999999999999999999999999999999994 1 124446899994 343 3
Q ss_pred cCCCeeEEeecCCCcEEEEEecCcchhhhhhcccchhhHHHHHHHHHHHHHHHhCCCchhhhhhhccchhhhhhhhhhhc
Q 018397 92 FNPIRTTDVQLPAGGTFVVAHSLAESLKAITAASNYNNRVVECRLTAIVLAIKLGMKPQEAISKVKTLSDVEGLCVAFAC 171 (356)
Q Consensus 92 ~~~~~~~~~~~p~~~~~ll~~s~~~~~~~~~~~~~~~~r~~e~~~a~~~l~~~~~~~~~~~~~~~~~Lr~v~~~~~~~~g 171 (356)
..+..+.++++|+++.+++++|+...+|.. +.+.+ .
T Consensus 151 g~g~~~~~~~~~~~~~~vlv~p~~~~sT~~---------------a~~~l------------------~----------- 186 (301)
T PRK01212 151 ENGVISVKIPVFDDLKWVVAIPNIELSTAE---------------ARAVL------------------P----------- 186 (301)
T ss_pred CCceEEEEecCCCCeEEEEEECCCcCCHHH---------------HHHhC------------------c-----------
Confidence 555667888777789999999986332211 00000 0
Q ss_pred cCCCCCCcccccCCCCHHHHHHHhhhhhhhhhhcCCChhhHHhhhhhHHHHHHHhhHHhHHHHHHHHHHHHhcCCCchHH
Q 018397 172 KNGSSDPVFAVKEPYTALDIEKITEEKLTSIFANSSSSLDVLNAAKQYKLHQRAAHVYSEAKRVHAFKDTVSSNLSEEDK 251 (356)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~i~E~~rv~~~~~al~~~~~~~~~ 251 (356)
+.++.. ..+.+..|+..+..++.++ |
T Consensus 187 ------------~~~~~~-------------------------------------~~~~~~~~~~~l~~al~~~-----d 212 (301)
T PRK01212 187 ------------KQYSLK-------------------------------------DAVFNSSRAALLVAALYTG-----D 212 (301)
T ss_pred ------------CcCCHH-------------------------------------HHHHHHHHHHHHHHHHhhC-----C
Confidence 000000 0011223455677888876 4
Q ss_pred HHHHHHHHHHH-HHHhhhhcCCCChHHHHHHHHHHhCCCceeEEeccCCcceEEEEecCCcHHHHHHHHHHHHHhcccCC
Q 018397 252 LKKLGDLMNDS-HHSCSVLYECSCPELEELVNVCRNNGALGARLTGAGWGGCVVALVKESIDSQFILNLKEQFYQSRIDR 330 (356)
Q Consensus 252 ~~~lg~lm~~s-h~~lr~~~~vs~peld~lv~~a~~~Ga~GaklsGaG~GG~vi~l~~~~~~~~~~~~l~~~~~~~~~~~ 330 (356)
++.++++|++. |+..|.. .+|+++.+++.+++.|++|++|||+| +|+++|++++..+++.+.+++.| ..+
T Consensus 213 ~~~~~~~~~~~~~~~~~~~---~~p~~~~i~~~~~~~Ga~g~~~SGsG--ptv~~l~~~~~~~~~~~~l~~~~-~~~--- 283 (301)
T PRK01212 213 YELAGRAMKDVLHEPYRAK---LIPGFAEVRQAALEAGALGAGISGAG--PTVFALCDKEDAEKVADALQKAF-LQG--- 283 (301)
T ss_pred HHHHHHHhchhheHHhHHh---hCCCHHHHHHHHHHCCCeEEEEEchh--hheeEEeccccHHHHHHHHHHhh-ccC---
Confidence 99999998543 5555433 47999999999999999999999877 99999998765588888887766 222
Q ss_pred CcccCCCCcceEEEeecCC-ceeec
Q 018397 331 GVINNNDLGLYVFASKPSS-GAAKF 354 (356)
Q Consensus 331 ~~~~~~~~~~~~~~~~p~~-Ga~v~ 354 (356)
.++.+++++|++ |++++
T Consensus 284 -------~~~~~~~~~~~~~G~~~~ 301 (301)
T PRK01212 284 -------IEGFVHVLRLDTAGARVL 301 (301)
T ss_pred -------CCeEEEEeccCCCceEeC
Confidence 367899999987 99874
No 23
>TIGR00191 thrB homoserine kinase. P.aeruginosa homoserine kinase seems not to be homologous (see PROSITE:PDOC0054)
Probab=99.90 E-value=3.9e-22 Score=190.27 Aligned_cols=216 Identities=20% Similarity=0.221 Sum_probs=149.7
Q ss_pred CcEEEEEEecCCCCCCCChHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhhhhhCCCCCchhH-HHHHhhcCCeEEEEe
Q 018397 13 QLFNHINSLFFNLGSGLSSSTAFVCSSTVALMAAFGVEVPKKEIAQLTCECEQFIGTQSGGMDQ-AISIMAKSGFAELID 91 (356)
Q Consensus 13 ~g~~i~i~s~IP~~~GLGSSaAl~va~~~al~~l~~~~ls~~el~~la~~~E~~~g~~~G~~D~-~~~~~Gg~~~~~~~d 91 (356)
+|+++.|.|+||+++|||||||.++|++.+++++++.++++++++++|.++|. -.|+ .++++||. .+..
T Consensus 79 ~g~~i~i~~~IP~~~GLGSSsa~~vA~l~a~~~l~~~~l~~~el~~~a~~~E~-------h~Dnv~~~l~GG~---~~~~ 148 (302)
T TIGR00191 79 PPVKVTLEKNIPLGRGLGSSAAAIVAALAAANELCGLPLSKERLLDYASELEG-------HPDNVAPALLGGF---QLAF 148 (302)
T ss_pred CCEEEEEEcCCCCcCCCChHHHHHHHHHHHHHHHcCCCcCHHHHHHHHHHhcC-------CcccHHHHhccCE---EEEE
Confidence 58999999999999999999999999999999999999999999999999994 1575 45889994 3343
Q ss_pred cCCCeeEEeecC--CCcEEEEEecCcchhhhhhcccchhhHHHHHHHHHHHHHHHhCCCchhhhhhhccchhhhhhhhhh
Q 018397 92 FNPIRTTDVQLP--AGGTFVVAHSLAESLKAITAASNYNNRVVECRLTAIVLAIKLGMKPQEAISKVKTLSDVEGLCVAF 169 (356)
Q Consensus 92 ~~~~~~~~~~~p--~~~~~ll~~s~~~~~~~~~~~~~~~~r~~e~~~a~~~l~~~~~~~~~~~~~~~~~Lr~v~~~~~~~ 169 (356)
.++....++++| +++.+++++|+.+.+|.. +.+.+++
T Consensus 149 ~~~~~~~~~~~~~~~~~~~vl~~p~~~~sT~~---------------a~~~lp~-------------------------- 187 (302)
T TIGR00191 149 VEDDKLEVLKIPIFSKLDWVLAIPNIEVSTAE---------------ARAVLPK-------------------------- 187 (302)
T ss_pred EcCCceEEEEeCCCCCEEEEEEECCCcccHHH---------------HHHhCcc--------------------------
Confidence 333335555544 689999999987433221 1111100
Q ss_pred hccCCCCCCcccccCCCCHHHHHHHhhhhhhhhhhcCCChhhHHhhhhhHHHHHHHhhHHhHHHHHHHHHHHHhcCCCch
Q 018397 170 ACKNGSSDPVFAVKEPYTALDIEKITEEKLTSIFANSSSSLDVLNAAKQYKLHQRAAHVYSEAKRVHAFKDTVSSNLSEE 249 (356)
Q Consensus 170 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~i~E~~rv~~~~~al~~~~~~~ 249 (356)
.+++.+. +....++..++.++.+++
T Consensus 188 ---------------~~~~~~~-------------------------------------v~~~~~~~~l~~al~~~~--- 212 (302)
T TIGR00191 188 ---------------AYPRQDL-------------------------------------VFNLSHLAGLVHAIYQKK--- 212 (302)
T ss_pred ---------------cCCHHHH-------------------------------------HHHHHHHHHHHHHHHcCC---
Confidence 0111000 001122333456777652
Q ss_pred HHHHHHHHHHHHH--HHHhhhhcCCCChHHHHHHHHHHhCCCceeEEeccCCcceEEEEecCCcHHH-HHHHHHHHHHhc
Q 018397 250 DKLKKLGDLMNDS--HHSCSVLYECSCPELEELVNVCRNNGALGARLTGAGWGGCVVALVKESIDSQ-FILNLKEQFYQS 326 (356)
Q Consensus 250 ~~~~~lg~lm~~s--h~~lr~~~~vs~peld~lv~~a~~~Ga~GaklsGaG~GG~vi~l~~~~~~~~-~~~~l~~~~~~~ 326 (356)
+ .+++.+.++ |+..|.. .+|+++.+++.+++.|++|++|||+| +|+++|++++...+ +.+.+ +.+++.
T Consensus 213 --~-~l~~~~~~d~l~e~~~~~---l~p~l~~i~~~~~~~Ga~g~~lSGsG--ptv~al~~~~~~~~~~~~~~-~~~~~~ 283 (302)
T TIGR00191 213 --P-DLGAIMMKDRIHQPYRES---LIPNLFKIKQAALEKGAYGITISGSG--PTILAMADEEFAEQKEQDLL-EVLHKQ 283 (302)
T ss_pred --H-HHHHHHcccccchhhHhh---hCCCHHHHHHHHHHCCCeEEEEEchh--hhheEEecchhhHHHHHHHH-HHHHhc
Confidence 4 456666554 5666643 69999999999999999999999888 99999998754433 44444 333332
Q ss_pred ccCCCcccCCCCcceEEEeecCC-ceee
Q 018397 327 RIDRGVINNNDLGLYVFASKPSS-GAAK 353 (356)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~~~p~~-Ga~v 353 (356)
. .+..++++.+.+ |+++
T Consensus 284 ~----------~~~~~~~~~~~~~Ga~~ 301 (302)
T TIGR00191 284 G----------IEGTVHVLDFDNDGARV 301 (302)
T ss_pred C----------CCeEEEEcccCCCCeEe
Confidence 2 367899999987 9976
No 24
>PTZ00299 homoserine kinase; Provisional
Probab=99.89 E-value=1.2e-21 Score=188.33 Aligned_cols=221 Identities=20% Similarity=0.167 Sum_probs=159.2
Q ss_pred CcEEEEEEecCCCCCCCChHHHHHHHHHHHHHHHhCCCCC---HHHHHHHHHHhhhhhCCCCCchhHH-HHHhhcCCeEE
Q 018397 13 QLFNHINSLFFNLGSGLSSSTAFVCSSTVALMAAFGVEVP---KKEIAQLTCECEQFIGTQSGGMDQA-ISIMAKSGFAE 88 (356)
Q Consensus 13 ~g~~i~i~s~IP~~~GLGSSaAl~va~~~al~~l~~~~ls---~~el~~la~~~E~~~g~~~G~~D~~-~~~~Gg~~~~~ 88 (356)
+|+++.|+++||.++|||||||.++|.+.+++++++.+++ +++++++|.++|- =.||+ .+++||..
T Consensus 81 ~g~~i~i~k~IP~~~GLGSSsA~avA~l~a~n~l~g~~l~~~~~~el~~~A~~~EG-------HpDNVapal~GG~~--- 150 (336)
T PTZ00299 81 PPLKFIMHSNIPYGCGCGSSSAAAVAGFVAGMKLCGLTMETENEEALLQAIAKFEG-------HPDNAAPAIYGGIQ--- 150 (336)
T ss_pred CceEEEEecCCCccCCccHHHHHHHHHHHHHHHHhCCCCCccCHHHHHHHHHhhcC-------CcccHHHHHhCCEE---
Confidence 5899999999999999999999999999999999999985 7999999999982 16754 58999952
Q ss_pred EEec-C--CCeeEEeecCCCcEEEEEecCcc--hhhhhhcccchhhHHHHHHHHHHHHHHHhCCCchhhhhhhccchhhh
Q 018397 89 LIDF-N--PIRTTDVQLPAGGTFVVAHSLAE--SLKAITAASNYNNRVVECRLTAIVLAIKLGMKPQEAISKVKTLSDVE 163 (356)
Q Consensus 89 ~~d~-~--~~~~~~~~~p~~~~~ll~~s~~~--~~~~~~~~~~~~~r~~e~~~a~~~l~~~~~~~~~~~~~~~~~Lr~v~ 163 (356)
+... . .....+++.|+++.++++.|+.. -+|. .++++|++.
T Consensus 151 ~~~~~~~ge~~~~~i~~~~~~~~vv~iP~~~~~~sT~---------------~aR~vLP~~------------------- 196 (336)
T PTZ00299 151 LVYKKDNGRFLTYRVPTPPNLSVVLFVPHNKMKANTH---------------VTRNLIPTS------------------- 196 (336)
T ss_pred EEEecCCCceEEEecCCCCCeEEEEEECCCCccccHH---------------HHHhhCccc-------------------
Confidence 2221 1 12345677777899999999752 1110 111111111
Q ss_pred hhhhhhhccCCCCCCcccccCCCCHHHHHHHhhhhhhhhhhcCCChhhHHhhhhhHHHHHHHhhHHhHHHHHHHHHHHHh
Q 018397 164 GLCVAFACKNGSSDPVFAVKEPYTALDIEKITEEKLTSIFANSSSSLDVLNAAKQYKLHQRAAHVYSEAKRVHAFKDTVS 243 (356)
Q Consensus 164 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~i~E~~rv~~~~~al~ 243 (356)
++.++ .+....|+..++.+|.
T Consensus 197 ----------------------v~~~d-------------------------------------av~n~~~~~~lv~al~ 217 (336)
T PTZ00299 197 ----------------------VSLED-------------------------------------AVFNISRTSILVLALS 217 (336)
T ss_pred ----------------------CcHHH-------------------------------------HHHhhhHHHHHHHHHH
Confidence 11110 0111234444678888
Q ss_pred cCCCchHHHHHHHHHHHHHHHHhhhhcCCCChHHHHHHHHHHhCCCceeEEeccCCcceEEEEecC------------Cc
Q 018397 244 SNLSEEDKLKKLGDLMNDSHHSCSVLYECSCPELEELVNVCRNNGALGARLTGAGWGGCVVALVKE------------SI 311 (356)
Q Consensus 244 ~~~~~~~~~~~lg~lm~~sh~~lr~~~~vs~peld~lv~~a~~~Ga~GaklsGaG~GG~vi~l~~~------------~~ 311 (356)
++| ++.+..+...-|+..|.. -..|+++.+.+.+++.|++|+.||||| +++++|++. +.
T Consensus 218 ~~d-----~~ll~~~~D~lhep~R~~--~liP~~~~v~~~~~~~Ga~g~~lSGSG--PTv~al~~~~~~~~~~~~~~~~~ 288 (336)
T PTZ00299 218 TGD-----LRMLKSCSDKLHEQQRSD--ALFPHFRPCVKAAREAGAHYAFLSGAG--PSVCALVGGRHGDPLTQPREERK 288 (336)
T ss_pred hCC-----HHHHHhchhcccCccccc--ccCccHHHHHHHHHHCCCeEEEEEchh--hhheEEeccccccccccccchhH
Confidence 764 888865433357766531 158999999999999999999999999 999999972 23
Q ss_pred HHHHHHHHHHHHHhcccCCCcccCCCCcceEEEeecCC-ceeecc
Q 018397 312 DSQFILNLKEQFYQSRIDRGVINNNDLGLYVFASKPSS-GAAKFK 355 (356)
Q Consensus 312 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~-Ga~v~~ 355 (356)
.+++.++|++.|.+.+ +++.++++.++. |+++.+
T Consensus 289 ~~~i~~~~~~~~~~~~----------~~~~~~~~~~~~~G~~~~~ 323 (336)
T PTZ00299 289 AESVAEAMIKAAEAVG----------VAGRVIITQPSDQGVHLVG 323 (336)
T ss_pred HHHHHHHHHHHHHHcC----------CceEEEEccCCCCCcEEEe
Confidence 6789999988886543 478999999987 999864
No 25
>PRK03188 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional
Probab=99.88 E-value=7.8e-21 Score=181.13 Aligned_cols=212 Identities=14% Similarity=0.127 Sum_probs=146.4
Q ss_pred CcEEEEEEecCCCCCCCChHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhhhhhCCCCCchhHHHHHhhcCCeEEEEec
Q 018397 13 QLFNHINSLFFNLGSGLSSSTAFVCSSTVALMAAFGVEVPKKEIAQLTCECEQFIGTQSGGMDQAISIMAKSGFAELIDF 92 (356)
Q Consensus 13 ~g~~i~i~s~IP~~~GLGSSaAl~va~~~al~~l~~~~ls~~el~~la~~~E~~~g~~~G~~D~~~~~~Gg~~~~~~~d~ 92 (356)
+++++.|.|+||+++|||||||.++|++.+++++++.++++++++++|.++| .|..++++|| +++.+.
T Consensus 82 ~~~~I~i~s~IP~~~GLGSSSA~a~A~l~al~~~~g~~ls~~el~~~a~~ig---------~dv~~~~~GG---~~~~~~ 149 (300)
T PRK03188 82 PDVHLHIDKGIPVAGGMAGGSADAAAALVACDALWGLGLSRDELLELAAELG---------SDVPFALLGG---TALGTG 149 (300)
T ss_pred CCeEEEEEcCCcccCcchHHHHHHHHHHHHHHHHhCCCcCHHHHHHHHHHhC---------CCcchhhcCC---eEEEEe
Confidence 5899999999999999999999999999999999999999999999999975 4767788998 445544
Q ss_pred CCCeeEEeecCCCcEEEEEecCcchhhhhhcccchhhHHHHHHHHHHHHHHHhCCCchhhhhhhccchhhhhhhhhhhcc
Q 018397 93 NPIRTTDVQLPAGGTFVVAHSLAESLKAITAASNYNNRVVECRLTAIVLAIKLGMKPQEAISKVKTLSDVEGLCVAFACK 172 (356)
Q Consensus 93 ~~~~~~~~~~p~~~~~ll~~s~~~~~~~~~~~~~~~~r~~e~~~a~~~l~~~~~~~~~~~~~~~~~Lr~v~~~~~~~~g~ 172 (356)
++..+.++..+.++.++++.+...-+|.. +.+ .++..
T Consensus 150 ~g~~~~~~~~~~~~~~~lv~p~~~~sT~~---------------~~~------------------~l~~~---------- 186 (300)
T PRK03188 150 RGEQLAPVLARGTFHWVLAFADGGLSTPA---------------VFR------------------ELDRL---------- 186 (300)
T ss_pred cCCEEEECCCCCCcEEEEEeCCCCCCHHH---------------HHH------------------hchhh----------
Confidence 44455565555566666666554211110 000 00000
Q ss_pred CCCCCCcccccCCCCHHHHHHHhhhhhhhhhhcCCChhhHHhhhhhHHHHHHHhhHHhHHHHHHHHHHHHhcCCCchHHH
Q 018397 173 NGSSDPVFAVKEPYTALDIEKITEEKLTSIFANSSSSLDVLNAAKQYKLHQRAAHVYSEAKRVHAFKDTVSSNLSEEDKL 252 (356)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~i~E~~rv~~~~~al~~~~~~~~~~ 252 (356)
.. .+. +....++..++.++.++ |+
T Consensus 187 ----------------------~~--~~~---------------------------~~~~~~~~~~~~al~~~-----d~ 210 (300)
T PRK03188 187 ----------------------RE--AGD---------------------------PPRLGEPDPLLAALRAG-----DP 210 (300)
T ss_pred ----------------------hc--ccc---------------------------ccccccHHHHHHHHHcC-----CH
Confidence 00 000 00001234456777776 49
Q ss_pred HHHHHHHHHHHHHhhhhcCC-CChHHHHHHHHHHhCCCceeEEeccCCcceEEEEecC-CcHHHHHHHHHHHHHhcccCC
Q 018397 253 KKLGDLMNDSHHSCSVLYEC-SCPELEELVNVCRNNGALGARLTGAGWGGCVVALVKE-SIDSQFILNLKEQFYQSRIDR 330 (356)
Q Consensus 253 ~~lg~lm~~sh~~lr~~~~v-s~peld~lv~~a~~~Ga~GaklsGaG~GG~vi~l~~~-~~~~~~~~~l~~~~~~~~~~~ 330 (356)
+.++++|+...+. +.+ .+|+++++++.+++.|++|++|||+| +++++|+++ +.++++.+.+++ .+
T Consensus 211 ~~l~~~~~n~le~----~~~~~~p~l~~l~~~~~~~Galga~lSGsG--~tv~~l~~~~~~~~~~~~~l~~----~g--- 277 (300)
T PRK03188 211 AQLAPLLGNDLQA----AALSLRPSLRRTLRAGEEAGALAGIVSGSG--PTCAFLCADADSAVDVAAALSG----AG--- 277 (300)
T ss_pred HHHHHHhhCcCHH----HHHHhCchHHHHHHHHHHCCCCEEEEEccc--cceEEEeCCHHHHHHHHHHHHh----cC---
Confidence 9999998643322 233 49999999999999999999999887 789999976 345666666643 22
Q ss_pred CcccCCCCcceEEEeecCC-ceeecc
Q 018397 331 GVINNNDLGLYVFASKPSS-GAAKFK 355 (356)
Q Consensus 331 ~~~~~~~~~~~~~~~~p~~-Ga~v~~ 355 (356)
....++++++.+ |++|++
T Consensus 278 -------~~~~~~~~~~~~~~~~~~~ 296 (300)
T PRK03188 278 -------VCRTVRVATGPVPGARVVS 296 (300)
T ss_pred -------cceeEEEeeccccceEecc
Confidence 245788877765 999875
No 26
>TIGR01920 Shik_kin_archae shikimate kinase. This model represents the shikimate kinase (SK) gene found in archaea which is only distantly related to homoserine kinase (thrB) and not atr all to the bacterial SK enzyme. The SK from M. janaschii has been overexpressed in E. coli and characterized. SK catalyzes the fifth step of the biosynthesis of chorismate from D-erythrose-4-phosphate and phosphoenolpyruvate.
Probab=99.87 E-value=1.1e-20 Score=176.37 Aligned_cols=99 Identities=23% Similarity=0.176 Sum_probs=82.2
Q ss_pred CcEEEEEEecCCCCCCCChHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhhhhh--CCCCCchhHHHHHhhcCCeEEEE
Q 018397 13 QLFNHINSLFFNLGSGLSSSTAFVCSSTVALMAAFGVEVPKKEIAQLTCECEQFI--GTQSGGMDQAISIMAKSGFAELI 90 (356)
Q Consensus 13 ~g~~i~i~s~IP~~~GLGSSaAl~va~~~al~~l~~~~ls~~el~~la~~~E~~~--g~~~G~~D~~~~~~Gg~~~~~~~ 90 (356)
+|+++.++++||.++|||||||+++|++.+++++++.+++++++++++.++|+.. +..+|.+|+++++||| +++.
T Consensus 63 ~g~~i~i~s~iP~~~GLGSSaA~~~a~~~al~~~~~~~l~~~~l~~la~~~e~~~~~~~~~~~~D~~~~~~gG---~~~~ 139 (261)
T TIGR01920 63 DGLEVEVESEIPAGSGLKSSSALVNALVEAVLKAKGVEIDDIDILRLGARLSKDAGLSVTGAFDDAAASYLGG---IVIT 139 (261)
T ss_pred CCEEEEEecCCCCCCCcchHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhhCCCCCCcHHHHHHHHhCC---EEEE
Confidence 5899999999999999999999999999999999999999999999999999844 3567789999999999 4566
Q ss_pred ecCCCeeE-EeecCCCcEEEEEecCc
Q 018397 91 DFNPIRTT-DVQLPAGGTFVVAHSLA 115 (356)
Q Consensus 91 d~~~~~~~-~~~~p~~~~~ll~~s~~ 115 (356)
+.++.... +.++| +..+++++|+.
T Consensus 140 ~~~~~~~~~~~~~~-~~~~vv~~p~~ 164 (261)
T TIGR01920 140 DNRRMKILKRDKLE-GCTAAVLVPKE 164 (261)
T ss_pred eCCCceEEEecCCC-CceEEEEECCC
Confidence 66554333 33433 45788888875
No 27
>PRK02534 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional
Probab=99.87 E-value=2.7e-21 Score=185.22 Aligned_cols=222 Identities=17% Similarity=0.197 Sum_probs=152.8
Q ss_pred CcEEEEEEecCCCCCCCChHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhhhhhCCCCCchhHHHHHhhcCCeEEEEec
Q 018397 13 QLFNHINSLFFNLGSGLSSSTAFVCSSTVALMAAFGVEVPKKEIAQLTCECEQFIGTQSGGMDQAISIMAKSGFAELIDF 92 (356)
Q Consensus 13 ~g~~i~i~s~IP~~~GLGSSaAl~va~~~al~~l~~~~ls~~el~~la~~~E~~~g~~~G~~D~~~~~~Gg~~~~~~~d~ 92 (356)
+|+++.|.++||.++|||||||.++|++.+++++++.++++++++++|.++| .|...+++||. .+...
T Consensus 85 ~~~~i~i~~~IP~~~GLGSssa~~~A~~~al~~~~~~~l~~~~l~~~a~~~g---------~dv~~~~~GG~---~~~~~ 152 (312)
T PRK02534 85 GGVDITLEKRIPIGAGLAGGSTDAAAVLVGLNLLWGLGLTQPELESLAAELG---------SDVPFCIAGGT---QLCFG 152 (312)
T ss_pred CCeEEEEecCCCCcCCccHHHHHHHHHHHHHHHHhCCCcCHHHHHHHHHHhC---------CCCcEEeECCe---EEEEC
Confidence 5899999999999999999999999999999999999999999999999887 35566889984 33333
Q ss_pred CCCeeEEeecCCCcEEEEE-ecCcchhhhhhcccchhhHHHHHHHHHHHHHHHhCCCchhhhhhhccchhhhhhhhhhhc
Q 018397 93 NPIRTTDVQLPAGGTFVVA-HSLAESLKAITAASNYNNRVVECRLTAIVLAIKLGMKPQEAISKVKTLSDVEGLCVAFAC 171 (356)
Q Consensus 93 ~~~~~~~~~~p~~~~~ll~-~s~~~~~~~~~~~~~~~~r~~e~~~a~~~l~~~~~~~~~~~~~~~~~Lr~v~~~~~~~~g 171 (356)
++..+.+++.|+++.++++ +|+...+|... .+.++.. +.
T Consensus 153 ~g~~~~~~~~~~~~~~vv~~~p~~~~~T~~a---------------~~~~~~~--------------~~----------- 192 (312)
T PRK02534 153 RGEILEPLPDLDGLGVVLAKYPSLSVSTPWA---------------YKTYRQQ--------------FG----------- 192 (312)
T ss_pred CCCEeEECCCCCCcEEEEEECCCCCccHHHH---------------HHHHhhh--------------cc-----------
Confidence 4445677777778999887 68874332211 0001000 00
Q ss_pred cCCCCCCcccccCCCCHHHHHHHhhhhhhhhhhcCCChhhHHhhhhhHHHHHHHhhHHhHHHHHHHHHHHHhcCCCchHH
Q 018397 172 KNGSSDPVFAVKEPYTALDIEKITEEKLTSIFANSSSSLDVLNAAKQYKLHQRAAHVYSEAKRVHAFKDTVSSNLSEEDK 251 (356)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~i~E~~rv~~~~~al~~~~~~~~~ 251 (356)
+.++..+ .... .+....|...+..++.++ |
T Consensus 193 ------------~~~~~~~-----------------------------~~~~----~~~~~~~~~~l~~al~~~-----d 222 (312)
T PRK02534 193 ------------DTYLSDE-----------------------------EDFE----QRRQALRSGPLLQAISAK-----D 222 (312)
T ss_pred ------------cccccCc-----------------------------cccc----ccccccchhHHHHhhhcc-----C
Confidence 0000000 0000 011112333456777765 4
Q ss_pred HHHHHHHHHHHHHHhhhhcCCCChHHHHHHHHHH-hCCCceeEEeccCCcceEEEEecC-CcHHHHHHHHHHHHHhcccC
Q 018397 252 LKKLGDLMNDSHHSCSVLYECSCPELEELVNVCR-NNGALGARLTGAGWGGCVVALVKE-SIDSQFILNLKEQFYQSRID 329 (356)
Q Consensus 252 ~~~lg~lm~~sh~~lr~~~~vs~peld~lv~~a~-~~Ga~GaklsGaG~GG~vi~l~~~-~~~~~~~~~l~~~~~~~~~~ 329 (356)
++.+++.| |+.++....-.+|++.++++.++ +.|++|+.|||+| +|+++|++. +.++++.+.+++.+...
T Consensus 223 ~~~~~~~~---~n~l~~~~~~~~~~i~~~~~~l~~~~Ga~~~~lSGsG--ptv~~l~~~~~~a~~~~~~l~~~~~~~--- 294 (312)
T PRK02534 223 PPPIAQLL---HNDLEKVVLPEYPQVAKLLELLSSLPGCLGTMMSGSG--PTCFALFESQEQAEQALEQVREAFADP--- 294 (312)
T ss_pred HHHHHHhh---hCchHHHhHhcChHHHHHHHHHHhccCCCeeEEECcC--cceEEEeCCHHHHHHHHHHHHHHhccC---
Confidence 99998876 44555553236899999998888 8999999999777 999999976 36777888886655321
Q ss_pred CCcccCCCCcceEEEeecCC-ceee
Q 018397 330 RGVINNNDLGLYVFASKPSS-GAAK 353 (356)
Q Consensus 330 ~~~~~~~~~~~~~~~~~p~~-Ga~v 353 (356)
...++++.+.+ |++|
T Consensus 295 ---------~~~v~i~~~~n~G~~v 310 (312)
T PRK02534 295 ---------GLDAWVCQFISHGIQL 310 (312)
T ss_pred ---------ceEEEEEEecCCCcee
Confidence 23688888876 9976
No 28
>PRK01123 shikimate kinase; Provisional
Probab=99.87 E-value=3.4e-20 Score=175.22 Aligned_cols=100 Identities=16% Similarity=0.075 Sum_probs=81.4
Q ss_pred CcEEEEEEecCCCCCCCChHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhhhhh-C-CCCCchhHHHHHhhcCCeEEEE
Q 018397 13 QLFNHINSLFFNLGSGLSSSTAFVCSSTVALMAAFGVEVPKKEIAQLTCECEQFI-G-TQSGGMDQAISIMAKSGFAELI 90 (356)
Q Consensus 13 ~g~~i~i~s~IP~~~GLGSSaAl~va~~~al~~l~~~~ls~~el~~la~~~E~~~-g-~~~G~~D~~~~~~Gg~~~~~~~ 90 (356)
+|+++.++|+||.++|||||||+++|++.+++++++.++++++++++|.++|+.. + ..++.+|+++++|||+ ++.
T Consensus 74 ~~~~i~i~s~IP~~~GLGSSaA~~va~~~a~~~~~~~~l~~~el~~la~~~e~~~~~~~~g~~~d~~~~~~GG~---~~~ 150 (282)
T PRK01123 74 YGATVRTKSEIPLASGLKSSSAAANATVLATLDALGEDLDDLDILRLGVKASRDAGVTVTGAFDDACASYFGGV---TVT 150 (282)
T ss_pred CCEEEEEecCCCCCCCccHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhhccccccccCchhHHHHHHhCCE---EEE
Confidence 4899999999999999999999999999999999999999999999999999743 3 3566788999999994 344
Q ss_pred ecCCC-eeEEeecCCCcEEEEEecCcch
Q 018397 91 DFNPI-RTTDVQLPAGGTFVVAHSLAES 117 (356)
Q Consensus 91 d~~~~-~~~~~~~p~~~~~ll~~s~~~~ 117 (356)
+.... ...+++ .++.+++++|+.+.
T Consensus 151 ~~~~~~~~~~~~--~~~~~vv~~p~~~~ 176 (282)
T PRK01123 151 DNREMKLLKRDE--VELDVLVLIPPEGA 176 (282)
T ss_pred cCCCceEEEEec--CCcEEEEEECCCCc
Confidence 43332 223333 35899999998643
No 29
>PRK00128 ipk 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional
Probab=99.86 E-value=6.2e-21 Score=180.59 Aligned_cols=188 Identities=16% Similarity=0.158 Sum_probs=137.1
Q ss_pred CcEEEEEEecCCCCCCCChHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhhhhhCCCCCchhHHHHHhhcCCeEEEEec
Q 018397 13 QLFNHINSLFFNLGSGLSSSTAFVCSSTVALMAAFGVEVPKKEIAQLTCECEQFIGTQSGGMDQAISIMAKSGFAELIDF 92 (356)
Q Consensus 13 ~g~~i~i~s~IP~~~GLGSSaAl~va~~~al~~l~~~~ls~~el~~la~~~E~~~g~~~G~~D~~~~~~Gg~~~~~~~d~ 92 (356)
+|+++.|.++||.++|||||||.++|++.+++++++.++++++++++|.++| .|..++++||. .+.+.
T Consensus 83 ~~~~i~i~~~iP~~~GLGSSsa~a~a~~~al~~~~~~~l~~~~l~~~a~~~g---------~dv~~~~~Gg~---~~~~~ 150 (286)
T PRK00128 83 QGVSITIDKNIPVAAGLAGGSSDAAATLRGLNKLWNLGLSLEELAEIGLEIG---------SDVPFCIYGGT---ALATG 150 (286)
T ss_pred CCeEEEEEcCCCccccchHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHhC---------CCCCeEeeCCe---EEEec
Confidence 5899999999999999999999999999999999999999999999999987 37777889984 34444
Q ss_pred CCCeeEEeecCCCcEEEEEecCcchhhhhhcccchhhHHHHHHHHHHHHHHHhCCCchhhhhhhccchhhhhhhhhhhcc
Q 018397 93 NPIRTTDVQLPAGGTFVVAHSLAESLKAITAASNYNNRVVECRLTAIVLAIKLGMKPQEAISKVKTLSDVEGLCVAFACK 172 (356)
Q Consensus 93 ~~~~~~~~~~p~~~~~ll~~s~~~~~~~~~~~~~~~~r~~e~~~a~~~l~~~~~~~~~~~~~~~~~Lr~v~~~~~~~~g~ 172 (356)
++....+++.+++..+++++|+...+|... + +.++ .
T Consensus 151 ~g~~~~~~~~~~~~~~vv~~p~~~~~T~~~-------~--------------------------~~~~---~-------- 186 (286)
T PRK00128 151 RGEKITPLKSPPSCWVVLAKPDIGVSTKDV-------Y--------------------------KNLD---L-------- 186 (286)
T ss_pred CCcccccCCCCCCcEEEEEcCCCCCCHHHH-------H--------------------------hcCc---c--------
Confidence 444455665556778999999863322110 0 0000 0
Q ss_pred CCCCCCcccccCCCCHHHHHHHhhhhhhhhhhcCCChhhHHhhhhhHHHHHHHhhHHhHHHHHHHHHHHHhcCCCchHHH
Q 018397 173 NGSSDPVFAVKEPYTALDIEKITEEKLTSIFANSSSSLDVLNAAKQYKLHQRAAHVYSEAKRVHAFKDTVSSNLSEEDKL 252 (356)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~i~E~~rv~~~~~al~~~~~~~~~~ 252 (356)
++.. ...+..+..++.++ |+
T Consensus 187 --------------------------------------------------~~~~-----~~~~~~~~~~l~~~-----d~ 206 (286)
T PRK00128 187 --------------------------------------------------DKIS-----HPDTEKLIEAIEEG-----DY 206 (286)
T ss_pred --------------------------------------------------cccc-----CcchHHHHHHHhcC-----CH
Confidence 0000 00123345667765 49
Q ss_pred HHHHHHHHHHHHHhhhhcCC-CChHHHHHHHHHHhCCCceeEEeccCCcceEEEEecC-CcHHHHHHHHHHH
Q 018397 253 KKLGDLMNDSHHSCSVLYEC-SCPELEELVNVCRNNGALGARLTGAGWGGCVVALVKE-SIDSQFILNLKEQ 322 (356)
Q Consensus 253 ~~lg~lm~~sh~~lr~~~~v-s~peld~lv~~a~~~Ga~GaklsGaG~GG~vi~l~~~-~~~~~~~~~l~~~ 322 (356)
+.++++|++..+ .+.+ .+|+++++++.+++.|++|++|||+| ||+++|++. +.++++.+.+++.
T Consensus 207 ~~~~~~~~n~l~----~~~~~~~p~l~~l~~~~~~~Ga~g~~lSGsG--~sv~~l~~~~~~~~~i~~~l~~~ 272 (286)
T PRK00128 207 QGICANMGNVLE----NVTLKKYPEIAKIKERMLKFGADGALMSGSG--PTVFGLFDDESRAQRIYNGLKGF 272 (286)
T ss_pred HHHHHhccCcHH----HHHHhhChHHHHHHHHHHhcCCCeeEEcccC--ccEEEEeCCHHHHHHHHHHhHhh
Confidence 999998864222 2344 48999999999999999999999888 999999976 3567777777543
No 30
>TIGR00144 beta_RFAP_syn beta-RFAP synthase. This protein family contains several archaeal examples of beta-ribofuranosylaminobenzene 5-prime-phosphate synthase (beta-RFAP synthase), an enzyme involved in methanopterin biosynthesis. In some species, two members of this family are found. It is unclear whether both act as beta-RFAP synthase. This family is related to the GHMP kinases (Galactokinase, Homoserine kinase, Mevalonate kinase, Phosphomevalonate kinase). Members are found so far only in the Archaea and in Methylobacterium extorquens.
Probab=99.85 E-value=1.5e-19 Score=173.65 Aligned_cols=221 Identities=16% Similarity=0.157 Sum_probs=151.8
Q ss_pred CcEEEEEEecCCCCCCCChHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhhhhhCCCCCchhHHHHHhhcCCeEEEEe-
Q 018397 13 QLFNHINSLFFNLGSGLSSSTAFVCSSTVALMAAFGVEVPKKEIAQLTCECEQFIGTQSGGMDQAISIMAKSGFAELID- 91 (356)
Q Consensus 13 ~g~~i~i~s~IP~~~GLGSSaAl~va~~~al~~l~~~~ls~~el~~la~~~E~~~g~~~G~~D~~~~~~Gg~~~~~~~d- 91 (356)
+|+++.|.++||.++|||||||+++|.+.+++++++.+++++++++++.++|. ...|.+++++||+ ++..
T Consensus 81 ~~~~i~i~~~IP~~~GLGSsaa~avA~~~a~~~l~~~~ls~~el~~~a~~ge~------s~~~va~~~~GG~---vv~~G 151 (324)
T TIGR00144 81 EGFHFTVRSMFPAHSGLGSGTQLSLAVGRLVSEYYGMKFTAREIAHIVGRGGT------SGIGVASFEDGGF---IVDGG 151 (324)
T ss_pred CCEEEEEeecCCCccCccHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHhCCCC------CccceeeeeeCCE---EEECC
Confidence 48999999999999999999999999999999999999999999999998772 1245566899994 2221
Q ss_pred --cC---------------CCeeEEeecCCCcEEEEEecCcchhhhhhcccchhhHHHHHHHHHHHHHHHhCCCchhhhh
Q 018397 92 --FN---------------PIRTTDVQLPAGGTFVVAHSLAESLKAITAASNYNNRVVECRLTAIVLAIKLGMKPQEAIS 154 (356)
Q Consensus 92 --~~---------------~~~~~~~~~p~~~~~ll~~s~~~~~~~~~~~~~~~~r~~e~~~a~~~l~~~~~~~~~~~~~ 154 (356)
+. +..+.++++| +|+|+++.|..+ .++. .|. +++|++..
T Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~r~~~p-~~~~vlviP~~~-~t~~-------are------~~~lp~~~--------- 207 (324)
T TIGR00144 152 HSSKEKSDFLPSSASSAKPAPVIARYDFP-DWNIILAIPEID-SVSG-------RRE------VNIFQKYC--------- 207 (324)
T ss_pred cccccccccCcccccCCCCCCeEEecCCC-CcEEEEEecCCC-CCCc-------HHH------HHHHHhcC---------
Confidence 01 1124566677 999999999864 2211 121 11222210
Q ss_pred hhccchhhhhhhhhhhccCCCCCCcccccCCCCHHHHHHHhhhhhhhhhhcCCChhhHHhhhhhHHHHHHHhhHHhHHHH
Q 018397 155 KVKTLSDVEGLCVAFACKNGSSDPVFAVKEPYTALDIEKITEEKLTSIFANSSSSLDVLNAAKQYKLHQRAAHVYSEAKR 234 (356)
Q Consensus 155 ~~~~Lr~v~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~i~E~~r 234 (356)
.++.+++ .+ ..|
T Consensus 208 ------------------------------~i~~~dv-------------------------------~~-------~~~ 219 (324)
T TIGR00144 208 ------------------------------PVPLRDV-------------------------------ER-------ICH 219 (324)
T ss_pred ------------------------------CCCHHHH-------------------------------HH-------HHH
Confidence 0111110 11 122
Q ss_pred H--HHHHHHHhcCCCchHHHHHHHHHHHHHHHHhhhhc--CCCChHHHHHHHHHHhCCCceeEEeccCCcceEEEEecCC
Q 018397 235 V--HAFKDTVSSNLSEEDKLKKLGDLMNDSHHSCSVLY--ECSCPELEELVNVCRNNGALGARLTGAGWGGCVVALVKES 310 (356)
Q Consensus 235 v--~~~~~al~~~~~~~~~~~~lg~lm~~sh~~lr~~~--~vs~peld~lv~~a~~~Ga~GaklsGaG~GG~vi~l~~~~ 310 (356)
+ .+++.++.++ |++.|++.|++.+..-.+.. +.-.|.+..+++.+++ ++|+-|||+| +|+++|++.+
T Consensus 220 ~~l~~l~~al~~~-----d~~~~~~~l~d~~~~~f~~~~~~~r~~li~~~~~~l~~--a~g~~iSGsG--PTv~al~~~~ 290 (324)
T TIGR00144 220 LILMKMMPAVVEG-----DLDAFGESVNEIQGLGFKKIERELQDPLIKRIIDSMIS--APGAGMSSFG--PTVYAVTDEK 290 (324)
T ss_pred HHHHHHHHHHHhc-----CHHHHHHHHHHHHhhcchhhhccccCHHHHHHHHHHHh--ccCceecCCC--CeEEEEecCc
Confidence 2 3467888876 49999999987554321111 1247778887777765 4899999555 9999999754
Q ss_pred cHHHHHHHHHHHHHhcccCCCcccCCCCcceEEEeecCC-ceeec
Q 018397 311 IDSQFILNLKEQFYQSRIDRGVINNNDLGLYVFASKPSS-GAAKF 354 (356)
Q Consensus 311 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~-Ga~v~ 354 (356)
++++.+.+.+.|...+ +...++++.+.+ |++|.
T Consensus 291 -~~~~~~~~~~~~~~~~----------~~~~~~~~~~~n~Ga~v~ 324 (324)
T TIGR00144 291 -PGNIAGAVADIFGPYG----------VYGRIIVTKARNRGAFII 324 (324)
T ss_pred -hHHHHHHHHHHhhhCC----------CceEEEEEccCCCCCEeC
Confidence 7778888877664322 477899999986 99873
No 31
>COG1907 Predicted archaeal sugar kinases [General function prediction only]
Probab=99.84 E-value=2.8e-19 Score=163.59 Aligned_cols=228 Identities=18% Similarity=0.179 Sum_probs=165.9
Q ss_pred hcCCcEEEEEEecCCCCCCCChHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhhh-hhCCCCCchhHHHHHhhcCCeEE
Q 018397 10 TKFQLFNHINSLFFNLGSGLSSSTAFVCSSTVALMAAFGVEVPKKEIAQLTCECEQ-FIGTQSGGMDQAISIMAKSGFAE 88 (356)
Q Consensus 10 ~~~~g~~i~i~s~IP~~~GLGSSaAl~va~~~al~~l~~~~ls~~el~~la~~~E~-~~g~~~G~~D~~~~~~Gg~~~~~ 88 (356)
+...|+++.|.+.||.+.||||.++++.|++.+++++++++++-+|||....+.-. -+|. ++.-+||+
T Consensus 67 e~~~gv~I~I~~~~P~HvGLGS~TQlaLa~a~ai~~i~gl~~~~~elA~~vgRG~tSgiGv-------~afe~GGF---- 135 (312)
T COG1907 67 EVGEGVKIEIRSDIPAHVGLGSTTQLALAVASAILEIYGLELSIRELAFAVGRGGTSGIGV-------YAFEYGGF---- 135 (312)
T ss_pred cccCceEEEEEecCchhcCCChHHHHHHHHHHHHHHHhcCCCCHHHHHHHHccCCccceeE-------EEEEECCE----
Confidence 34478999999999999999999999999999999999999999999988877642 3333 33466664
Q ss_pred EEec------CC--Ce--eEEeecCCCcEEEEEecCcchhhhhhcccchhhHHHHHHHHHHHHHHHhCCCchhhhhhhcc
Q 018397 89 LIDF------NP--IR--TTDVQLPAGGTFVVAHSLAESLKAITAASNYNNRVVECRLTAIVLAIKLGMKPQEAISKVKT 158 (356)
Q Consensus 89 ~~d~------~~--~~--~~~~~~p~~~~~ll~~s~~~~~~~~~~~~~~~~r~~e~~~a~~~l~~~~~~~~~~~~~~~~~ 158 (356)
++|. .| .. +-+.++|.+|.|+|+.|..++.- +..| | .++++++.+
T Consensus 136 IVDGGh~~~f~ps~~sP~I~R~dfPedW~~VlaIP~~~rg~-------~~~~--E----~~if~~~~p------------ 190 (312)
T COG1907 136 IVDGGHSFGFLPSSASPLIFRLDFPEDWRFVLAIPEVERGV-------SGRR--E----VDIFKKYCP------------ 190 (312)
T ss_pred EEECCcccCcccCCCCceeeeecCCCceEEEEEecCCCccc-------cchH--H----HHHHHhcCC------------
Confidence 3432 11 12 56678899999999999975421 1111 1 223333211
Q ss_pred chhhhhhhhhhhccCCCCCCcccccCCCCHHHHHHHhhhhhhhhhhcCCChhhHHhhhhhHHHHHHHhhHHhHHHHHHHH
Q 018397 159 LSDVEGLCVAFACKNGSSDPVFAVKEPYTALDIEKITEEKLTSIFANSSSSLDVLNAAKQYKLHQRAAHVYSEAKRVHAF 238 (356)
Q Consensus 159 Lr~v~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~i~E~~rv~~~ 238 (356)
.+.+ ..+++.|++ +.++
T Consensus 191 ---------------------------~p~~-------------------------------~~~~ls~~v-----Lm~m 207 (312)
T COG1907 191 ---------------------------VPLE-------------------------------EVGELSHRV-----LMKM 207 (312)
T ss_pred ---------------------------CCHH-------------------------------HHHHHHHHH-----HHHH
Confidence 1111 123344432 4567
Q ss_pred HHHHhcCCCchHHHHHHHHHHHHHHHHh---hhhc--CCCChHHHHHHHHHHhCCCceeEEeccCCcceEEEEecCCcHH
Q 018397 239 KDTVSSNLSEEDKLKKLGDLMNDSHHSC---SVLY--ECSCPELEELVNVCRNNGALGARLTGAGWGGCVVALVKESIDS 313 (356)
Q Consensus 239 ~~al~~~~~~~~~~~~lg~lm~~sh~~l---r~~~--~vs~peld~lv~~a~~~Ga~GaklsGaG~GG~vi~l~~~~~~~ 313 (356)
..|+... |++.||+.|++-|... .+.. ...|+.+..+++.+.+. ++|+.+| .||+++++++++....
T Consensus 208 mPavvE~-----Die~fg~~l~~iQ~l~g~~f~~~e~~~~~~~V~~iv~~m~~~-a~~agqS--SwGPtvY~i~d~~~~~ 279 (312)
T COG1907 208 MPAVVER-----DIESFGEALNEIQELGGKWFKKVEGGLQREDVKEIVDEMVEA-AYGAGQS--SWGPTVYGIVDSREAG 279 (312)
T ss_pred hHHHHhh-----CHHHHHHHHHHHHHHHhhhhhhhhceeccHHHHHHHHHHHHh-ccccccc--ccCCEEEEeccccccc
Confidence 7888765 5999999999999887 3332 35689999999999998 8999998 8999999999887766
Q ss_pred HHHHHHHHHHHhcccCCCcccCCCCcceEEEeecCC-ceeec
Q 018397 314 QFILNLKEQFYQSRIDRGVINNNDLGLYVFASKPSS-GAAKF 354 (356)
Q Consensus 314 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~-Ga~v~ 354 (356)
.+...+.+.+.++. ....+++|+|.| ||.++
T Consensus 280 ~~~~~~~~~~~~~g----------~~gev~vT~~rN~Ga~i~ 311 (312)
T COG1907 280 SVVRKLIDILLEEG----------IGGEVFVTKARNRGAEIL 311 (312)
T ss_pred hHHHHHHHHHHhcC----------CceEEEEeccCCCCceec
Confidence 66666666665544 477999999987 99875
No 32
>TIGR01219 Pmev_kin_ERG8 phosphomevalonate kinase, ERG8-type, eukaryotic branch. This enzyme is part of the mevalonate pathway, one of two alternative pathways for the biosynthesis of IPP. In an example of nonorthologous gene displacement, two different types of phosphomevalonate kinase are found - the animal type and this ERG8 type. This model represents plant and fungal forms of the ERG8 type of phosphomevalonate kinase.
Probab=99.82 E-value=3.7e-18 Score=169.25 Aligned_cols=243 Identities=16% Similarity=0.145 Sum_probs=153.9
Q ss_pred CCcEEEEEEecC-------------------CC--------CCCCChHHHHHHHHHHHHHHHhCCCC-------------
Q 018397 12 FQLFNHINSLFF-------------------NL--------GSGLSSSTAFVCSSTVALMAAFGVEV------------- 51 (356)
Q Consensus 12 ~~g~~i~i~s~I-------------------P~--------~~GLGSSaAl~va~~~al~~l~~~~l------------- 51 (356)
+++++++|.|+. +. +.|||||||++||++.||..+++..+
T Consensus 111 l~~~~itI~sd~d~ySq~~~~~~~~~~~~f~~~~~~~~e~~K~GLGSSAAvtVa~v~ALl~~~~~~~~~~~~~~~~~~~~ 190 (454)
T TIGR01219 111 LQGLDITILGDNAYYSQPESLGTLAPFASITFNAAEKPEVAKTGLGSSAAMTTALVAALLHYLGVVDLSDPDKEGKFGCS 190 (454)
T ss_pred cCceEEEEEecCCcccccchhcccccccccccccccCCCccccCccHHHHHHHHHHHHHHHHhCCccccccccccccccc
Confidence 568999998777 22 68999999999999999999999776
Q ss_pred CHHHHHHHHHHhhh-hhCCCCCchhHHHHHhhcCCeEEEEecCCC----------------------------eeEEeec
Q 018397 52 PKKEIAQLTCECEQ-FIGTQSGGMDQAISIMAKSGFAELIDFNPI----------------------------RTTDVQL 102 (356)
Q Consensus 52 s~~el~~la~~~E~-~~g~~~G~~D~~~~~~Gg~~~~~~~d~~~~----------------------------~~~~~~~ 102 (356)
+++.+.++|..+|. ..|.++++.|.++++||| +.|..+.+. .++++.+
T Consensus 191 ~~~~i~kLA~~ah~~~qGk~GSG~DvAaavyGg---i~Y~rfd~~~l~~~~~~~~~~~~~~~L~~~v~~~W~~~i~~l~l 267 (454)
T TIGR01219 191 DLDVIHNLAQTAHCLAQGKVGSGFDVSAAVYGS---QRYRRFSPELISFLQVAITGLPLNEVLGTIVKGKWDNKRTEFSL 267 (454)
T ss_pred CHHHHHHHHHHHHHhhcCCCCCchhhhhhhcCc---eEEEecChhhhhhhhccccccchhhhHHHHhccCCCCceeeccC
Confidence 77899999999997 457666679999999999 456665431 3446677
Q ss_pred CCCcEEEEEecCcchhhhhhcccchhhHHHHHHHHHHHHHHHhCCCchhhhhhhccchhhhhhhhhhhccCCCCCCcccc
Q 018397 103 PAGGTFVVAHSLAESLKAITAASNYNNRVVECRLTAIVLAIKLGMKPQEAISKVKTLSDVEGLCVAFACKNGSSDPVFAV 182 (356)
Q Consensus 103 p~~~~~ll~~s~~~~~~~~~~~~~~~~r~~e~~~a~~~l~~~~~~~~~~~~~~~~~Lr~v~~~~~~~~g~~~~~~~~~~~ 182 (356)
|+++++++.+++.+++|...+...-..|...-.....++ +.|....
T Consensus 268 P~~l~Llvgdtg~~ssT~~lV~~V~~~~~~~p~~s~~i~---------------~~l~~aN------------------- 313 (454)
T TIGR01219 268 PPLMNLFMGDPGGGSSTPSMVGKVKKWQMSDPEESRENW---------------QNLSDAN------------------- 313 (454)
T ss_pred CCCCEEEEEcCCCCcCcHHHHHHHHHHHHHCHHHHHHHH---------------HHHHHHH-------------------
Confidence 889999999999998877654322111100000000000 0000000
Q ss_pred cCCCCHHHHHHHhhhhhhhhhhcCCChhhHHhhhhhHHHHHHHhhHHhHHHHHHHHHHHHhcCC---CchHHHHHHHHHH
Q 018397 183 KEPYTALDIEKITEEKLTSIFANSSSSLDVLNAAKQYKLHQRAAHVYSEAKRVHAFKDTVSSNL---SEEDKLKKLGDLM 259 (356)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~i~E~~rv~~~~~al~~~~---~~~~~~~~lg~lm 259 (356)
..+...+ .++.+. ..+....|.. +++.+.++. ....++..+.+.|
T Consensus 314 ------~~~~~~l----~~l~~~---------~~~~~~~y~~-------------~~~~l~~~~~~~~~~~~~~~i~~~i 361 (454)
T TIGR01219 314 ------LELETKL----NDLSKL---------AKDHWDVYLR-------------VIKVLTSEKCVLHATEELLEAREAM 361 (454)
T ss_pred ------HHHHHHH----Hhhhhh---------hccccchhhh-------------hhhhhccccchhcccccHHHHHHHH
Confidence 0000000 000000 0000000111 112222210 0011577788888
Q ss_pred HHHHHHhhhhc-----CCCChHHHHHHHHHHhC-CCceeEEeccCCcceEEEEecCCcHHHHHHHHHHHHHh
Q 018397 260 NDSHHSCSVLY-----ECSCPELEELVNVCRNN-GALGARLTGAGWGGCVVALVKESIDSQFILNLKEQFYQ 325 (356)
Q Consensus 260 ~~sh~~lr~~~-----~vs~peld~lv~~a~~~-Ga~GaklsGaG~GG~vi~l~~~~~~~~~~~~l~~~~~~ 325 (356)
.++...||+.. .+-+|++-+|++.+.+. |++|++.+|||||.|+++|+..+. ++.+.+.+.|..
T Consensus 362 ~~~R~~Lr~~~~~sgv~IEp~~~t~Lld~~~~~~Gvl~a~vpGAGGgDa~~~l~~~~~--~~~~~~~~~W~~ 431 (454)
T TIGR01219 362 LRIRRLMRQITEEASVDIEPESQTQLLDSTMSLEGVLLAGVPGAGGFDAIFAITLGDV--DSGTKLTQAWSS 431 (454)
T ss_pred HHHHHHHHHhhHhcCCcccCHHHHHHHHHHhhcCCeeEeecCCCCccceEEEEecCCh--HHHHHHHHHHhh
Confidence 88888887663 45689999999999884 999999999999999999986543 256667677744
No 33
>TIGR00154 ispE 4-diphosphocytidyl-2C-methyl-D-erythritol kinase. Members of this family of GHMP kinases were previously designated as conserved hypothetical protein YchB or as isopentenyl monophosphate kinase. It is now known, in tomato and E. coli, to encode 4-diphosphocytidyl-2C-methyl-D-erythritol kinase, an enzyme of the deoxyxylulose phosphate pathway of terpenoid biosynthesis.
Probab=99.81 E-value=1.5e-18 Score=164.83 Aligned_cols=95 Identities=15% Similarity=0.089 Sum_probs=78.9
Q ss_pred CCcEEEEEEecCCCCCCCChHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhhhhhCCCCCchhHHHHHhhcCCeEEEEe
Q 018397 12 FQLFNHINSLFFNLGSGLSSSTAFVCSSTVALMAAFGVEVPKKEIAQLTCECEQFIGTQSGGMDQAISIMAKSGFAELID 91 (356)
Q Consensus 12 ~~g~~i~i~s~IP~~~GLGSSaAl~va~~~al~~l~~~~ls~~el~~la~~~E~~~g~~~G~~D~~~~~~Gg~~~~~~~d 91 (356)
.+|+++.|+++||.++|||||||.++|++.+++++++.++++++++++|.++| .|...+++||. .+..
T Consensus 84 ~~~~~i~i~~~iP~~aGLGsssa~aaa~l~al~~~~~~~l~~~~l~~la~~lg---------~Dv~~~~~gg~---~~~~ 151 (293)
T TIGR00154 84 LDGANIEIDKNIPMGAGLGGGSSDAATVLVGLNQLWQLGLSLEELAELGLTLG---------ADVPFFVSGHA---AFAT 151 (293)
T ss_pred CCCeEEEEeccCCCCCCcchhHHHHHHHHHHHHHHhCCCcCHHHHHHHHHHhC---------CCcceEEECCe---EEEE
Confidence 35899999999999999999999999999999999999999999999999886 47777889883 3444
Q ss_pred cCCCeeEEeecCCCcEEEEEecCcchh
Q 018397 92 FNPIRTTDVQLPAGGTFVVAHSLAESL 118 (356)
Q Consensus 92 ~~~~~~~~~~~p~~~~~ll~~s~~~~~ 118 (356)
..+....+++.++++.+++++|+.+.+
T Consensus 152 g~ge~~~~l~~~~~~~~vl~~p~~~~s 178 (293)
T TIGR00154 152 GVGEIITPFEDPPEKWVVIAKPHVSIS 178 (293)
T ss_pred ecCcEEEECCCCCCcEEEEEcCCCCcC
Confidence 444445666655678899999987543
No 34
>PRK14616 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional
Probab=99.79 E-value=3.4e-18 Score=161.97 Aligned_cols=193 Identities=13% Similarity=0.126 Sum_probs=131.2
Q ss_pred CcEEEEEEecCCCCCCCChHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhhhhhCCCCCchhHHHHH-hhcCCeEEEEe
Q 018397 13 QLFNHINSLFFNLGSGLSSSTAFVCSSTVALMAAFGVEVPKKEIAQLTCECEQFIGTQSGGMDQAISI-MAKSGFAELID 91 (356)
Q Consensus 13 ~g~~i~i~s~IP~~~GLGSSaAl~va~~~al~~l~~~~ls~~el~~la~~~E~~~g~~~G~~D~~~~~-~Gg~~~~~~~d 91 (356)
+|+++.|.++||+++|||||||.++|++.+++++++.+++.++++++|.++| .|..+++ +||. .+..
T Consensus 82 ~~~~I~i~k~IP~~~GLGssSA~aaA~l~al~~l~g~~ls~~el~~~a~~ig---------~Dvp~~l~~gg~---~~~~ 149 (287)
T PRK14616 82 KGVSITLDKRVPFGAGLGGGSSDAATVLRVLNELWEINAPSADLHRLAVKLG---------ADVPYFLEMKGL---AYAT 149 (287)
T ss_pred CCeEEEEEeCCCCcCCchHHHHHHHHHHHHHHHHhCCCcCHHHHHHHHHHhC---------CCcceEeccCCc---EEEE
Confidence 6899999999999999999999999999999999999999999999999987 3433333 3553 2333
Q ss_pred cCCCeeEEeecCCCcEEEEEecCcchhhhhhcccchhhHHHHHHHHHHHHHHHhCCCchhhhhhhccchhhhhhhhhhhc
Q 018397 92 FNPIRTTDVQLPAGGTFVVAHSLAESLKAITAASNYNNRVVECRLTAIVLAIKLGMKPQEAISKVKTLSDVEGLCVAFAC 171 (356)
Q Consensus 92 ~~~~~~~~~~~p~~~~~ll~~s~~~~~~~~~~~~~~~~r~~e~~~a~~~l~~~~~~~~~~~~~~~~~Lr~v~~~~~~~~g 171 (356)
......++++.+..+.+++++|+.+-+|... .+.+...
T Consensus 150 g~g~~~~~~~~~~~~~~vvv~P~~~vsT~~a---------------~~~l~~~--------------------------- 187 (287)
T PRK14616 150 GIGDELEDLQLTLPFHIVTVFPEEHISTVWA---------------YKNFYRR--------------------------- 187 (287)
T ss_pred EcCceeEECCcCCCcEEEEECCCCCcCHHHH---------------HHHhhhh---------------------------
Confidence 3333455555444578999999874332211 1111000
Q ss_pred cCCCCCCcccccCCCCHHHHHHHhhhhhhhhhhcCCChhhHHhhhhhHHHHHHHhhHHhHHHHHHHHHHHHhcCCCchHH
Q 018397 172 KNGSSDPVFAVKEPYTALDIEKITEEKLTSIFANSSSSLDVLNAAKQYKLHQRAAHVYSEAKRVHAFKDTVSSNLSEEDK 251 (356)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~i~E~~rv~~~~~al~~~~~~~~~ 251 (356)
+. . ...++..++.++... ++
T Consensus 188 --------------~~----------------------------------~--------~~~~~~~l~~~l~~~----~~ 207 (287)
T PRK14616 188 --------------FE----------------------------------R--------ERPDLKTLVRRLCLD----GD 207 (287)
T ss_pred --------------cc----------------------------------c--------CCchHHHHHHHHhcC----CH
Confidence 00 0 000111122333321 13
Q ss_pred HHHHHHHHHHHHHHhhhhcCCCChHHHHHHHHHHhCCCceeEEeccCCcceEEEEecC-CcHHHHHHHHHHHHHh
Q 018397 252 LKKLGDLMNDSHHSCSVLYECSCPELEELVNVCRNNGALGARLTGAGWGGCVVALVKE-SIDSQFILNLKEQFYQ 325 (356)
Q Consensus 252 ~~~lg~lm~~sh~~lr~~~~vs~peld~lv~~a~~~Ga~GaklsGaG~GG~vi~l~~~-~~~~~~~~~l~~~~~~ 325 (356)
++.++.++|+- +..|.. ..|+++++.+.+++.|++|+.|||+| +|+++|+++ +.++++.+.+++.|..
T Consensus 208 ~~l~~~~~nD~-e~~~~~---l~p~l~~v~~~~~~~Galg~~lSGSG--ptv~al~~~~~~a~~i~~~l~~~~~~ 276 (287)
T PRK14616 208 TSVLPAFENDF-ESAVFD---HYPAVRKVKDDLLEAGSFFASLSGSG--SAVFGLFENEADAEAAAEMMRARYRT 276 (287)
T ss_pred HHHHHHhcCcc-HHHHHH---hChHHHHHHHHHHhCCCCeEEEeccc--ccceEEeCCHHHHHHHHHHhHHhCcc
Confidence 55566555543 333332 48999999999999999999999999 899999986 5688888888877753
No 35
>PRK14614 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional
Probab=99.78 E-value=2.7e-18 Score=162.11 Aligned_cols=95 Identities=11% Similarity=0.053 Sum_probs=78.2
Q ss_pred CcEEEEEEecCCCCCCCChHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhhhhhCCCCCchhHHHHHhhcCCeEEEEec
Q 018397 13 QLFNHINSLFFNLGSGLSSSTAFVCSSTVALMAAFGVEVPKKEIAQLTCECEQFIGTQSGGMDQAISIMAKSGFAELIDF 92 (356)
Q Consensus 13 ~g~~i~i~s~IP~~~GLGSSaAl~va~~~al~~l~~~~ls~~el~~la~~~E~~~g~~~G~~D~~~~~~Gg~~~~~~~d~ 92 (356)
+|+++.|.++||+++|||||||.++|++.+++++++.+++++++.++|...| .|...+++||. .+...
T Consensus 84 ~~~~i~i~~~IP~~~GLGsssa~~~a~~~al~~~~~~~l~~~~l~~~a~~~G---------~Dv~~~l~gg~---~~~~g 151 (280)
T PRK14614 84 VGIDISITKNIPVAAGLGGGSSDAATVLMGVNELLGLGLSDERLMEIGVKLG---------ADVPFFIFKKT---ALAEG 151 (280)
T ss_pred CceEEEEEecCCCcCccHHHHHHHHHHHHHHHHHhCCCcCHHHHHHHHHHhC---------CCcceeeeCCc---EEEEE
Confidence 5899999999999999999999999999999999999999999999998765 47777788874 34443
Q ss_pred CCCeeEEeecCCCcEEEEEecCcchhh
Q 018397 93 NPIRTTDVQLPAGGTFVVAHSLAESLK 119 (356)
Q Consensus 93 ~~~~~~~~~~p~~~~~ll~~s~~~~~~ 119 (356)
++..+.+++.++++.+++++|+.+.+|
T Consensus 152 ~ge~~~~l~~~~~~~ivl~~p~~~~sT 178 (280)
T PRK14614 152 IGDKLTAVEGVPPLWVVLVNPGLHVST 178 (280)
T ss_pred cCceeEECCCCCCcEEEEECCCCCCCH
Confidence 444566666556788999999985543
No 36
>PRK14608 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional
Probab=99.77 E-value=1.2e-17 Score=158.37 Aligned_cols=94 Identities=10% Similarity=0.027 Sum_probs=78.9
Q ss_pred CcEEEEEEecCCCCCCCChHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhhhhhCCCCCchhHHHHHhhcCCeEEEEec
Q 018397 13 QLFNHINSLFFNLGSGLSSSTAFVCSSTVALMAAFGVEVPKKEIAQLTCECEQFIGTQSGGMDQAISIMAKSGFAELIDF 92 (356)
Q Consensus 13 ~g~~i~i~s~IP~~~GLGSSaAl~va~~~al~~l~~~~ls~~el~~la~~~E~~~g~~~G~~D~~~~~~Gg~~~~~~~d~ 92 (356)
+|+++.|.++||+++|||||||.++|++.+++++++.++++++++++|.++| .|...+++||. .+...
T Consensus 89 ~~~~i~i~k~IP~~~GLGsssa~aaa~l~~l~~l~~~~ls~~el~~la~~ig---------~dv~~~l~gg~---~~~~g 156 (290)
T PRK14608 89 PPGAFHLEKNLPVAAGIGGGSADAAAALRLLARLWGLALDDERLAALALSLG---------ADVPVCLDSRP---LIMRG 156 (290)
T ss_pred CceEEEEEeCCcCcCCchHHHHHHHHHHHHHHHHhCCCcCHHHHHHHHHHhC---------CCcchhhcCCe---EEEEe
Confidence 5899999999999999999999999999999999999999999999999875 48788899984 34444
Q ss_pred CCCeeEEeecCCCcEEEEEecCcchh
Q 018397 93 NPIRTTDVQLPAGGTFVVAHSLAESL 118 (356)
Q Consensus 93 ~~~~~~~~~~p~~~~~ll~~s~~~~~ 118 (356)
.+..+.+++.++++.+++++|+.+.+
T Consensus 157 ~g~~~~~l~~~~~~~~vv~~p~~~~s 182 (290)
T PRK14608 157 IGEELTPLPGLPSLPAVLVNPGVPVA 182 (290)
T ss_pred cCCEeEECCCCCCcEEEEECCCCCcC
Confidence 44456666544578899999987544
No 37
>PRK14615 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional
Probab=99.75 E-value=3.8e-17 Score=155.34 Aligned_cols=95 Identities=15% Similarity=0.007 Sum_probs=75.5
Q ss_pred CcEEEEEEecCCCCCCCChHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhhhhhCCCCCchhHHHHHhhcCCeEEEEec
Q 018397 13 QLFNHINSLFFNLGSGLSSSTAFVCSSTVALMAAFGVEVPKKEIAQLTCECEQFIGTQSGGMDQAISIMAKSGFAELIDF 92 (356)
Q Consensus 13 ~g~~i~i~s~IP~~~GLGSSaAl~va~~~al~~l~~~~ls~~el~~la~~~E~~~g~~~G~~D~~~~~~Gg~~~~~~~d~ 92 (356)
+|+++.|.++||.++|||||||.++|++.+++++++.+++.+++++++..+| .|...+++||. .+...
T Consensus 87 ~~~~i~i~k~IP~~~GLGsgsa~aaa~l~al~~l~~~~l~~~~l~~~a~~~g---------aDvPffl~gg~---a~~~G 154 (296)
T PRK14615 87 PPLEVHLRKGIPHGAGLGGGSADAAALLRHLNSIAPHPLSPEALAKLAAGVG---------ADVPFFLHNVP---CRATG 154 (296)
T ss_pred CCeEEEEEeCCCCCCCccHHHHHHHHHHHHHHHHcCCCcCHHHHHHHHHHhC---------CCCeeeccCCC---EEEEe
Confidence 5899999999999999999999999999999999999999999999999987 35444555653 23443
Q ss_pred CCCeeEEeec-CCCcEEEEEecCcchhh
Q 018397 93 NPIRTTDVQL-PAGGTFVVAHSLAESLK 119 (356)
Q Consensus 93 ~~~~~~~~~~-p~~~~~ll~~s~~~~~~ 119 (356)
....++++++ ++++.+++++|+++-+|
T Consensus 155 ~Ge~~~~l~~~~~~~~~vl~~P~~~vsT 182 (296)
T PRK14615 155 IGEILTPVALGLSGWTLVLVCPEVQVST 182 (296)
T ss_pred eEeEEEECCCCCCCcEEEEECCCCCcCh
Confidence 4445666654 34678999999885443
No 38
>PRK14611 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional
Probab=99.73 E-value=1.6e-16 Score=149.63 Aligned_cols=94 Identities=12% Similarity=0.062 Sum_probs=77.5
Q ss_pred CcEEEEEEecCCCCCCCChHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhhhhhCCCCCchhHHHHHhhcCCeEEEEec
Q 018397 13 QLFNHINSLFFNLGSGLSSSTAFVCSSTVALMAAFGVEVPKKEIAQLTCECEQFIGTQSGGMDQAISIMAKSGFAELIDF 92 (356)
Q Consensus 13 ~g~~i~i~s~IP~~~GLGSSaAl~va~~~al~~l~~~~ls~~el~~la~~~E~~~g~~~G~~D~~~~~~Gg~~~~~~~d~ 92 (356)
+|+++.+.++||+++|||||||.++|++.+++++++.+++++++.++|..+| .|...+++|| +.+...
T Consensus 79 ~~~~i~i~k~IP~~~GLGSSsA~aaA~l~al~~~~~~~l~~~~l~~la~~i~---------~D~~~~~~Gg---~~~~~~ 146 (275)
T PRK14611 79 INYSIFIEKNIPVGAGLGGGSSNAAVVLKYLNELLGNPLSEEELFELASSIS---------ADAPFFLKGG---FALGRG 146 (275)
T ss_pred CCeEEEEEeCCCCcCCccHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhC---------CCCCeeecCC---eEEEec
Confidence 5899999999999999999999999999999999999999999999999987 3655567887 445554
Q ss_pred CCCeeEEeecCCCcEEEEEecCcchh
Q 018397 93 NPIRTTDVQLPAGGTFVVAHSLAESL 118 (356)
Q Consensus 93 ~~~~~~~~~~p~~~~~ll~~s~~~~~ 118 (356)
.+....+++.+.++.+++++|+.+.+
T Consensus 147 ~g~~~~~~~~~~~~~~vv~~p~~~~s 172 (275)
T PRK14611 147 IGDKLEFLEKPISREITLVYPNIKSS 172 (275)
T ss_pred cCceeEECCcCCCcEEEEEeCCCCCC
Confidence 44445566555567899999998554
No 39
>PRK14612 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional
Probab=99.73 E-value=3.6e-17 Score=154.15 Aligned_cols=90 Identities=14% Similarity=0.101 Sum_probs=69.3
Q ss_pred CcEEEEEEecCCCCCCCChHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhhhhhCCCCCchhHHHHHhhcCCeEEEEec
Q 018397 13 QLFNHINSLFFNLGSGLSSSTAFVCSSTVALMAAFGVEVPKKEIAQLTCECEQFIGTQSGGMDQAISIMAKSGFAELIDF 92 (356)
Q Consensus 13 ~g~~i~i~s~IP~~~GLGSSaAl~va~~~al~~l~~~~ls~~el~~la~~~E~~~g~~~G~~D~~~~~~Gg~~~~~~~d~ 92 (356)
+|+++.|.++||+++|||||||.++|++.+++++++.+++ +.+++..+| .|...+++||. .+...
T Consensus 82 ~~~~I~i~k~IP~~~GLGssSa~aaa~l~al~~l~~~~l~---l~~ia~~~g---------~dv~~~~~GG~---~~~~g 146 (276)
T PRK14612 82 GGVRITLEKRLPLAAGLGGGSSDAAATLLALAQLYPAPVD---LPALALTLG---------ADVPFFLLGGA---AEARG 146 (276)
T ss_pred CCeEEEEEecCCCcCCCchHHHHHHHHHHHHHHHhCCChH---HHHHHHHhC---------CCcCeeeeCCe---EEEEe
Confidence 5899999999999999999999999999999999998775 444444443 47777899984 34443
Q ss_pred CCCeeEEeecCCCcEEEEEecCcchh
Q 018397 93 NPIRTTDVQLPAGGTFVVAHSLAESL 118 (356)
Q Consensus 93 ~~~~~~~~~~p~~~~~ll~~s~~~~~ 118 (356)
.+..+.+++.| ++.+++++|+.+.+
T Consensus 147 ~g~~~~~l~~~-~~~~vv~~P~~~~s 171 (276)
T PRK14612 147 VGERLTPLELP-PVPLVLVNPGVAVS 171 (276)
T ss_pred cCccceEcCCC-CcEEEEECCCCCCC
Confidence 43446666544 78999999987543
No 40
>PRK14613 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional
Probab=99.73 E-value=1.9e-16 Score=150.56 Aligned_cols=197 Identities=15% Similarity=0.101 Sum_probs=129.3
Q ss_pred CcEEEEEEecCCCCCCCChHHHHHHHHHHHHHHHhCCCCCH-HHHHHHHHHhhhhhCCCCCchhHHHHHhhcCCeEEEEe
Q 018397 13 QLFNHINSLFFNLGSGLSSSTAFVCSSTVALMAAFGVEVPK-KEIAQLTCECEQFIGTQSGGMDQAISIMAKSGFAELID 91 (356)
Q Consensus 13 ~g~~i~i~s~IP~~~GLGSSaAl~va~~~al~~l~~~~ls~-~el~~la~~~E~~~g~~~G~~D~~~~~~Gg~~~~~~~d 91 (356)
+|+++.|.++||+++|||||||.+++++.+++..++ ++. +++.++|.++| .|...++.|+ ..+.+
T Consensus 92 ~~v~I~i~K~IP~~aGLGggSs~Aaa~l~~l~~~~~--l~~~e~L~~lA~~lG---------aDvP~~l~G~---~a~~~ 157 (297)
T PRK14613 92 PGVKIHLTKRISPAGGLGGGSTNAASLLNFLFSWRN--FFTSDEMQVFAKEIG---------SDVPFFLGEG---HAFVT 157 (297)
T ss_pred CCeEEEEEeCCCccCCccccHHHHHHHHHHHHhcCC--CCcHHHHHHHHHHhC---------CccchhhcCC---eEEEe
Confidence 589999999999999999999998888877777554 454 66777998885 4855555444 44556
Q ss_pred cCCCeeEEeecCCCcEEEEEecCcchhhhhhcccchhhHHHHHHHHHHHHHHHhCCCchhhhhhhccchhhhhhhhhhhc
Q 018397 92 FNPIRTTDVQLPAGGTFVVAHSLAESLKAITAASNYNNRVVECRLTAIVLAIKLGMKPQEAISKVKTLSDVEGLCVAFAC 171 (356)
Q Consensus 92 ~~~~~~~~~~~p~~~~~ll~~s~~~~~~~~~~~~~~~~r~~e~~~a~~~l~~~~~~~~~~~~~~~~~Lr~v~~~~~~~~g 171 (356)
..+....++++|..+. ++++|+.+-+|.. +.+.++....
T Consensus 158 g~Ge~~~~l~~~~~~~-vlv~P~~~vsT~~---------------a~~~l~~~~~------------------------- 196 (297)
T PRK14613 158 GKGEIMEEIEVHKGQG-ILALTPQVMNTGE---------------MYALLKKPLQ------------------------- 196 (297)
T ss_pred cCCcEEEEcCCCCCeE-EEEECCCCcChHH---------------HHHhcchhhc-------------------------
Confidence 5555677777666654 6778887433221 1111111000
Q ss_pred cCCCCCCcccccCCCCHHHHHHHhhhhhhhhhhcCCChhhHHhhhhhHHHHHHHhhHHhHHHHHHHHHHHHhcCCCchHH
Q 018397 172 KNGSSDPVFAVKEPYTALDIEKITEEKLTSIFANSSSSLDVLNAAKQYKLHQRAAHVYSEAKRVHAFKDTVSSNLSEEDK 251 (356)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~i~E~~rv~~~~~al~~~~~~~~~ 251 (356)
.+.. +. . + +.+...++.++.++ |
T Consensus 197 --------------~~~~----------~~-------------------~-------~--~~~~~~~~~al~~~-----~ 219 (297)
T PRK14613 197 --------------ESAS----------QK-------------------N-------G--NTLSEDLISSLKVG-----D 219 (297)
T ss_pred --------------cccc----------cc-------------------c-------c--cccHHHHHHHHHcC-----C
Confidence 0000 00 0 0 01122345666665 3
Q ss_pred HHHHHHHH-HHHHHHhhhhcCCCChHHHHHHHHHHhCCCceeEEeccCCcceEEEEecC-CcHHHHHHHHHHHHHhcc
Q 018397 252 LKKLGDLM-NDSHHSCSVLYECSCPELEELVNVCRNNGALGARLTGAGWGGCVVALVKE-SIDSQFILNLKEQFYQSR 327 (356)
Q Consensus 252 ~~~lg~lm-~~sh~~lr~~~~vs~peld~lv~~a~~~Ga~GaklsGaG~GG~vi~l~~~-~~~~~~~~~l~~~~~~~~ 327 (356)
++.+...| |+. +..+.. .+|+++++++.+++.|++|++||||| +|+++|++. +.++++.+.+++.|....
T Consensus 220 ~~~l~~~l~ndl-e~~~~~---l~P~~~~i~~~~~~~Ga~~~~mSGSG--ptvf~l~~~~~~a~~~~~~l~~~~~~~~ 291 (297)
T PRK14613 220 WVSLQGRLENDF-EPVAFQ---LHPELGVLKDKFLEFGSSYCSLTGSG--SSMYGLVQGLEIQEELLPRLRQEFSNLT 291 (297)
T ss_pred HHHHHHHhcccc-hHHHHH---hCcHHHHHHHHHHHcCCCEEEEEccc--cceEEEeCCHHHHHHHHHHHHHhhccce
Confidence 77775544 555 333322 38999999999999999999999997 999999987 577888888877765433
No 41
>PRK14609 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional
Probab=99.73 E-value=5.1e-17 Score=152.41 Aligned_cols=94 Identities=13% Similarity=0.048 Sum_probs=77.2
Q ss_pred CcEEEEEEecCCCCCCCChHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhhhhhCCCCCchhHHHHHhhcCCeEEEEec
Q 018397 13 QLFNHINSLFFNLGSGLSSSTAFVCSSTVALMAAFGVEVPKKEIAQLTCECEQFIGTQSGGMDQAISIMAKSGFAELIDF 92 (356)
Q Consensus 13 ~g~~i~i~s~IP~~~GLGSSaAl~va~~~al~~l~~~~ls~~el~~la~~~E~~~g~~~G~~D~~~~~~Gg~~~~~~~d~ 92 (356)
+|+++.+.++||.++|||||||.++|++.+++++++.++++++++++|.+++ +|...+++||. .+...
T Consensus 81 ~~~~i~i~k~IP~~aGLGssss~aaa~l~al~~~~~~~l~~~~l~~la~~iG---------aDvpffl~g~~---a~~~G 148 (269)
T PRK14609 81 PPVHIHLYKHIPIGAGLGGGSSDAAFMLKLLNDKFNLGLSDEELEAYAATLG---------ADCAFFIRNKP---VYATG 148 (269)
T ss_pred CCeEEEEecCCCCCCcccHHHHHHHHHHHHHHHHhCCCcCHHHHHHHHHHhC---------CCceEEccCCC---EEEEE
Confidence 5899999999999999999999999999999999999999999999999874 57766777763 34444
Q ss_pred CCCeeEEeecC-CCcEEEEEecCcchh
Q 018397 93 NPIRTTDVQLP-AGGTFVVAHSLAESL 118 (356)
Q Consensus 93 ~~~~~~~~~~p-~~~~~ll~~s~~~~~ 118 (356)
++....+++.+ +++.+++++|+...+
T Consensus 149 ~Ge~l~~l~~~~~~~~~vlv~P~~~~s 175 (269)
T PRK14609 149 IGDIFSPIDLSLSGYYIALVKPDIHVS 175 (269)
T ss_pred eCCeeEECCCCCCCCEEEEECCCCCCC
Confidence 45556666543 578899999987543
No 42
>PRK00343 ipk 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional
Probab=99.59 E-value=2.7e-14 Score=134.11 Aligned_cols=93 Identities=17% Similarity=0.155 Sum_probs=72.8
Q ss_pred CcEEEEEEecCCCCCCCChHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhhhhhCCCCCchhHHHHHhhcCCeEEEEec
Q 018397 13 QLFNHINSLFFNLGSGLSSSTAFVCSSTVALMAAFGVEVPKKEIAQLTCECEQFIGTQSGGMDQAISIMAKSGFAELIDF 92 (356)
Q Consensus 13 ~g~~i~i~s~IP~~~GLGSSaAl~va~~~al~~l~~~~ls~~el~~la~~~E~~~g~~~G~~D~~~~~~Gg~~~~~~~d~ 92 (356)
+|+++.|.++||+++|||||||.++|++.+++++++.++++++++++|.++| .|...++.|+ ..+...
T Consensus 86 ~~~~i~i~k~IP~gaGLGssSs~aaa~l~al~~l~~~~ls~~el~~la~~ig---------aDvp~~l~g~---~~~~~g 153 (271)
T PRK00343 86 LGADISLDKRLPMGGGLGGGSSDAATTLVALNRLWQLGLSRDELAELGLKLG---------ADVPVFVRGH---AAFAEG 153 (271)
T ss_pred CCeEEEEEcCCCCcCCCCcchHHHHHHHHHHHHHhCCCcCHHHHHHHHHHhC---------CCceEEecCC---cEEEEe
Confidence 5899999999999999999999999999999999999999999999998886 4543344443 234444
Q ss_pred CCCeeEEeecCCCcEEEEEecCcchh
Q 018397 93 NPIRTTDVQLPAGGTFVVAHSLAESL 118 (356)
Q Consensus 93 ~~~~~~~~~~p~~~~~ll~~s~~~~~ 118 (356)
.+....+++.| ...+++++|+.+.+
T Consensus 154 ~g~~~~~l~~~-~~~~vl~~p~~~~s 178 (271)
T PRK00343 154 IGEILTPVDLP-EKWYLVVKPGVHIS 178 (271)
T ss_pred cCCEEEECCCC-CcEEEEEeCCCCcC
Confidence 44456666644 45678999987543
No 43
>PRK00650 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional
Probab=99.55 E-value=1.7e-13 Score=129.01 Aligned_cols=92 Identities=14% Similarity=0.134 Sum_probs=76.8
Q ss_pred CcEEEEEEecCCCCCCCChHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhhhhhCCCCCchhHHHHHhhcCCeEEEEec
Q 018397 13 QLFNHINSLFFNLGSGLSSSTAFVCSSTVALMAAFGVEVPKKEIAQLTCECEQFIGTQSGGMDQAISIMAKSGFAELIDF 92 (356)
Q Consensus 13 ~g~~i~i~s~IP~~~GLGSSaAl~va~~~al~~l~~~~ls~~el~~la~~~E~~~g~~~G~~D~~~~~~Gg~~~~~~~d~ 92 (356)
+|+++.+.++||+++|||||||.++|++.+++++++.++++++++++|.++| .|...++.|| ..+...
T Consensus 79 ~~v~I~i~K~IP~gaGLGggSS~aAa~L~~ln~l~~~~ls~~eL~~lA~~lG---------aDvPffl~~g---~a~~~G 146 (288)
T PRK00650 79 TPVSWRVVKQIPIGAGLAGGSSNAATALFALNQIFQTGLSDEELRSLAEKIG---------MDTPFFFSTG---SALGVG 146 (288)
T ss_pred CCeEEEEeeCCCCcCCcCcchhHHHHHHHHHHHHhCCCcCHHHHHHHHHHhC---------CcchhhhcCc---eEEEEe
Confidence 4899999999999999999999999999999999999999999999999987 4777777666 334444
Q ss_pred CCCeeEEeecCCCcEEEEEecCcc
Q 018397 93 NPIRTTDVQLPAGGTFVVAHSLAE 116 (356)
Q Consensus 93 ~~~~~~~~~~p~~~~~ll~~s~~~ 116 (356)
.+..+++++.++++.++++.|+..
T Consensus 147 ~Ge~l~~~~~~~~~~~vlv~P~~~ 170 (288)
T PRK00650 147 RGEKIIALEESVSDRYVLYFSSEG 170 (288)
T ss_pred cCCEEEECcCCCCceEEEEeCCCC
Confidence 555667776556677899988763
No 44
>TIGR01240 mevDPdecarb diphosphomevalonate decarboxylase. Alternate names: mevalonate diphosphate decarboxylase; pyrophosphomevalonate decarboxylase
Probab=99.55 E-value=1.4e-12 Score=124.21 Aligned_cols=203 Identities=11% Similarity=0.106 Sum_probs=131.3
Q ss_pred CcEEEEEEecCCCCCCCChHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhhhhhCCCCCchhHHHHHhhcCCeEEEEec
Q 018397 13 QLFNHINSLFFNLGSGLSSSTAFVCSSTVALMAAFGVEVPKKEIAQLTCECEQFIGTQSGGMDQAISIMAKSGFAELIDF 92 (356)
Q Consensus 13 ~g~~i~i~s~IP~~~GLGSSaAl~va~~~al~~l~~~~ls~~el~~la~~~E~~~g~~~G~~D~~~~~~Gg~~~~~~~d~ 92 (356)
.++++.+.++||.++|||||||..+|++.|++++++.++++.++++++.++| |..|+ +++||+ +.+..
T Consensus 84 ~~v~I~~~n~iP~~aGLgSSAA~~aA~~~Al~~l~~l~l~~~eL~~lA~~gs---Gsa~~------s~~GG~---v~~~~ 151 (305)
T TIGR01240 84 EKLHIVSQNNFPTAAGLASSASGLAALVSACAKLYQLPLDTSELSRIARKGS---GSACR------SLFGGY---VAWEK 151 (305)
T ss_pred CceEEEEecCCCCCCccchHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhc---CCeee------eeecCe---EEEEc
Confidence 4799999999999999999999999999999999999999999999999987 44443 789995 33332
Q ss_pred ----CCCeeEEeecCCCc----EEEEEecCcchhhhhhcccchhhHHHHHHHHHHHHHHHhCCCchhhhhhhccchhhhh
Q 018397 93 ----NPIRTTDVQLPAGG----TFVVAHSLAESLKAITAASNYNNRVVECRLTAIVLAIKLGMKPQEAISKVKTLSDVEG 164 (356)
Q Consensus 93 ----~~~~~~~~~~p~~~----~~ll~~s~~~~~~~~~~~~~~~~r~~e~~~a~~~l~~~~~~~~~~~~~~~~~Lr~v~~ 164 (356)
.+....+++.|..| .++++.+..+++..++. .+ |
T Consensus 152 g~~~~~s~a~~i~~~~~~~~~~~~v~vv~~~~k~vsSt~---------gm-------------------------~---- 193 (305)
T TIGR01240 152 GKDDHSSAAVQVADDSDWPQXAMCVLVVNDIKKDVSSRQ---------GM-------------------------Q---- 193 (305)
T ss_pred CCCCCCeeEEECCCccccccceEEEEEcCCCCCCCCCHH---------HH-------------------------H----
Confidence 22334555554444 55566666533211110 00 0
Q ss_pred hhhhhhccCCCCCCcccccCCCCHHHHHHHhhhhhhhhhhcCCChhhHHhhhhhHHHHHHHhhHHhHHHHHHHHHHHHhc
Q 018397 165 LCVAFACKNGSSDPVFAVKEPYTALDIEKITEEKLTSIFANSSSSLDVLNAAKQYKLHQRAAHVYSEAKRVHAFKDTVSS 244 (356)
Q Consensus 165 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~i~E~~rv~~~~~al~~ 244 (356)
..++.+ . ....|..+. ..++.++++||.+
T Consensus 194 ----------------------------~~~~ts--~------------------~~~~~v~~~---~~~l~~~~~ai~~ 222 (305)
T TIGR01240 194 ----------------------------LTVATS--E------------------LFKEWIEHV---VPDFEVXRKAIKT 222 (305)
T ss_pred ----------------------------HhhhcC--c------------------cHHHHHHHH---HHHHHHHHHHHHh
Confidence 000000 0 011222221 1246778899997
Q ss_pred CCCchHHHHHHHHHHHHH----HHHhhhhc---CCCChHHHHHHHH---HHhCCCceeEEeccCCcceEEEEecCCcHHH
Q 018397 245 NLSEEDKLKKLGDLMNDS----HHSCSVLY---ECSCPELEELVNV---CRNNGALGARLTGAGWGGCVVALVKESIDSQ 314 (356)
Q Consensus 245 ~~~~~~~~~~lg~lm~~s----h~~lr~~~---~vs~peld~lv~~---a~~~Ga~GaklsGaG~GG~vi~l~~~~~~~~ 314 (356)
+ |++.||++...+ |..+.+-+ -.-+|+--.+++. .++.|....-..-|| +-+..|+.++..+.
T Consensus 223 ~-----D~~~~g~~~e~~~~~mHa~~~~~~p~~~y~~~~s~~ii~~v~~~r~~g~~~~~T~DAG--pNv~vl~~~~~~~~ 295 (305)
T TIGR01240 223 K-----DFATFGKETEANSLSMHATTLDAFPPFFYLNDTSKRAMSAVHTLRQGGTICYFTMDAG--PNVKVLYLAENLSK 295 (305)
T ss_pred c-----cHHHHHHHHHHHHHHHHHHHhcCCCCeEEECHHHHHHHHHHHHHHhCCCcEEEEEcCC--CCEEEEEccccHHH
Confidence 6 499999998865 44333221 0124444444444 445576666777777 88999999899999
Q ss_pred HHHHHHHHH
Q 018397 315 FILNLKEQF 323 (356)
Q Consensus 315 ~~~~l~~~~ 323 (356)
+.+.+.+.|
T Consensus 296 v~~~~~~~~ 304 (305)
T TIGR01240 296 LFEFIYKLF 304 (305)
T ss_pred HHHHHHHhc
Confidence 988886654
No 45
>PF00288 GHMP_kinases_N: GHMP kinases N terminal domain; InterPro: IPR006204 The galacto- (2.7.1.6 from EC), homoserine (2.7.1.39 from EC), mevalonate (2.7.1.36 from EC) and phosphomevalonate (2.7.4.2 from EC) kinases contain, in their N-terminal section, a conserved Gly/Ser-rich region which is probably involved in the binding of ATP [, ]. This group of kinases has been called 'GHMP' (from the first letter of their substrates).; GO: 0005524 ATP binding, 0016301 kinase activity, 0016310 phosphorylation; PDB: 3F0N_B 1PIE_A 2AJ4_A 1K47_E 3GON_A 2R3V_C 3HUL_A 1KVK_A 2R42_A 3D4J_A ....
Probab=99.54 E-value=2.6e-14 Score=105.71 Aligned_cols=67 Identities=36% Similarity=0.484 Sum_probs=61.8
Q ss_pred EEEEEecCCCCCCCChHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhhhhhCCCCCchhHHHHHhhc
Q 018397 16 NHINSLFFNLGSGLSSSTAFVCSSTVALMAAFGVEVPKKEIAQLTCECEQFIGTQSGGMDQAISIMAK 83 (356)
Q Consensus 16 ~i~i~s~IP~~~GLGSSaAl~va~~~al~~l~~~~ls~~el~~la~~~E~~~g~~~G~~D~~~~~~Gg 83 (356)
++.|+|+||.++|||||||+++|++.+++++++.+++++++++++..+|+..|.++ ++|+.+++|||
T Consensus 1 ~i~i~s~iP~~~GLgSSaa~~~a~~~a~~~~~~~~~~~~~l~~~a~~~e~~~g~~~-g~d~~~~~~GG 67 (67)
T PF00288_consen 1 DIEIDSNIPPGSGLGSSAALAVALAAALNKLFGLPLSKEELAKLAQEAERYIGKPS-GIDDAASAYGG 67 (67)
T ss_dssp EEEEEESSTTTSSSSHHHHHHHHHHHHHHHHTTTSSBHHHHHHHHHHHHHHCSSSH-SHHHHHHHHCS
T ss_pred CeEEEccCCCCCcccHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHcCCCC-hhhHHHHHhCc
Confidence 68999999999999999999999999999999999999999999999998448775 57779999997
No 46
>PF08544 GHMP_kinases_C: GHMP kinases C terminal ; InterPro: IPR013750 This domain is found in homoserine kinases (2.7.1.39 from EC), galactokinases (2.7.1.6 from EC) and mevalonate kinases (2.7.1.36 from EC). These kinases make up the GHMP kinase superfamily of ATP-dependent enzymes []. These enzymes are involved in the biosynthesis of isoprenes and amino acids as well as in carbohydrate metabolism. The C-terminal domain of homoserine kinase has a central alpha-beta plait fold and an insertion of four helices, which, together with the N-terminal fold, create a novel nucleotide binding fold [].; PDB: 2R3V_C 4EMD_A 4DXL_A 4ED4_A 2GS8_A 1K47_E 3GON_A 3K17_B 1PIE_A 2AJ4_A ....
Probab=99.51 E-value=5.2e-14 Score=108.55 Aligned_cols=82 Identities=32% Similarity=0.507 Sum_probs=69.9
Q ss_pred HHHHHhcCCCchHHHHHHHHHHHHHHHH-hhhhcCCCChHHHHHHHHHHhCCCceeEEeccCCcceEEEEe-cCCcHHHH
Q 018397 238 FKDTVSSNLSEEDKLKKLGDLMNDSHHS-CSVLYECSCPELEELVNVCRNNGALGARLTGAGWGGCVVALV-KESIDSQF 315 (356)
Q Consensus 238 ~~~al~~~~~~~~~~~~lg~lm~~sh~~-lr~~~~vs~peld~lv~~a~~~Ga~GaklsGaG~GG~vi~l~-~~~~~~~~ 315 (356)
+++||.++| ++.|+++|+++|.. ......+.+|+++.+++.+++.|++|++|||+|||||+++|+ +++.++++
T Consensus 1 m~~al~~~d-----~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~Ga~~~~~sGsG~G~~v~~l~~~~~~~~~v 75 (85)
T PF08544_consen 1 MIKALAEGD-----LELLGELMNENQENEPENYREVLTPEIDELKEAAEENGALGAKMSGSGGGPTVFALCKDEDDAERV 75 (85)
T ss_dssp HHHHHHTTC-----HHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHTTESEEEEETTSSSSEEEEEESSHHHHHHH
T ss_pred CHHHHHCcC-----HHHHHHHHHHhhhhcchHHHHHcCHHHHHHHHHHHHCCCCceecCCCCCCCeEEEEECCHHHHHHH
Confidence 357888764 99999999999885 212346689999999999999999999999999999999999 44689999
Q ss_pred HHHHHHHHH
Q 018397 316 ILNLKEQFY 324 (356)
Q Consensus 316 ~~~l~~~~~ 324 (356)
.++|++.|.
T Consensus 76 ~~~l~~~~~ 84 (85)
T PF08544_consen 76 AEALREHYK 84 (85)
T ss_dssp HHHHHHHTH
T ss_pred HHHHHHhCC
Confidence 999988774
No 47
>PRK14610 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional
Probab=99.50 E-value=3.5e-13 Score=127.44 Aligned_cols=89 Identities=11% Similarity=0.011 Sum_probs=73.0
Q ss_pred CcEEEEEEecCCCCCCCChHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhhhhhCCCCCchhHHHHHhhcCCeEEEEec
Q 018397 13 QLFNHINSLFFNLGSGLSSSTAFVCSSTVALMAAFGVEVPKKEIAQLTCECEQFIGTQSGGMDQAISIMAKSGFAELIDF 92 (356)
Q Consensus 13 ~g~~i~i~s~IP~~~GLGSSaAl~va~~~al~~l~~~~ls~~el~~la~~~E~~~g~~~G~~D~~~~~~Gg~~~~~~~d~ 92 (356)
+|+++.|.++||.++|||||||.++|++.+++++++ ++.+++.+++... +.|...+++|| ..+...
T Consensus 83 ~g~~i~i~K~IP~~aGLGggSs~aaa~L~~ln~l~~--ls~~~l~~ia~~l---------GaDvPffl~g~---~a~~~G 148 (283)
T PRK14610 83 TNVYVKVIKNIPVSAGLAGGSADAAAVIRLLGKLWG--IDEQILNELALSV---------GSDVPACLDSK---TLFVRG 148 (283)
T ss_pred CCeEEEEEcCCCCCCcCCccHHHHHHHHHHHHHHhC--CCHHHHHHHHHHh---------CCCCcEEEECC---eEEEEe
Confidence 589999999999999999999999999999999996 7999999999885 38888888887 446776
Q ss_pred CCCeeEEeec-CCCcEEEEEec-Cc
Q 018397 93 NPIRTTDVQL-PAGGTFVVAHS-LA 115 (356)
Q Consensus 93 ~~~~~~~~~~-p~~~~~ll~~s-~~ 115 (356)
++..+++++. +....++++.| ++
T Consensus 149 ~Ge~l~~l~~~~~~~~~vl~~p~~~ 173 (283)
T PRK14610 149 IGEDILLLPDLSLPTYVVLVAPKGK 173 (283)
T ss_pred cccEEEECcccCCCCeEEEEECCCC
Confidence 7667777743 22344788877 44
No 48
>COG1685 Archaeal shikimate kinase [Amino acid transport and metabolism / Coenzyme metabolism]
Probab=99.49 E-value=5.1e-12 Score=115.13 Aligned_cols=99 Identities=23% Similarity=0.221 Sum_probs=79.7
Q ss_pred CcEEEEEEecCCCCCCCChHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhhhhhCCC-CCc-hhHHHHHhhcCCeEEEE
Q 018397 13 QLFNHINSLFFNLGSGLSSSTAFVCSSTVALMAAFGVEVPKKEIAQLTCECEQFIGTQ-SGG-MDQAISIMAKSGFAELI 90 (356)
Q Consensus 13 ~g~~i~i~s~IP~~~GLGSSaAl~va~~~al~~l~~~~ls~~el~~la~~~E~~~g~~-~G~-~D~~~~~~Gg~~~~~~~ 90 (356)
.++++.++|+||.++||.||||++.|++.|+.++.+.++++.+++++..++-...|.. .|- -|..+++||| +.+.
T Consensus 69 ~~~~v~v~SeiP~~~GLkSSSA~~nAlv~A~~~~~g~~~~~~~i~~l~a~~S~~aGvSvTGA~DDa~AS~~GG---~~iT 145 (278)
T COG1685 69 LGVEVEVESEIPVGSGLKSSSAASNALVKAVLKALGEEIDDFEILRLGARASKEAGVSVTGAFDDACASYLGG---IVIT 145 (278)
T ss_pred cceEEEEecCCCcccCcchhHHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHHhcCceEeccchHHHHHHhCC---eEEe
Confidence 3799999999999999999999999999999999999999999999988887544432 344 5666789999 5678
Q ss_pred ecCCCeeEEe-ecCCCcEEEEEecCc
Q 018397 91 DFNPIRTTDV-QLPAGGTFVVAHSLA 115 (356)
Q Consensus 91 d~~~~~~~~~-~~p~~~~~ll~~s~~ 115 (356)
|.+...+-+. +.| ++..+|..|+.
T Consensus 146 DN~~m~Ilrr~~~~-~~~vlI~~p~~ 170 (278)
T COG1685 146 DNRKMRILRRLDLP-ELTVLILAPGE 170 (278)
T ss_pred cchhheehhccccC-CceEEEEecCC
Confidence 8777655444 444 67777777775
No 49
>COG1947 IspE 4-diphosphocytidyl-2C-methyl-D-erythritol 2-phosphate synthase [Lipid metabolism]
Probab=99.48 E-value=3.4e-13 Score=125.89 Aligned_cols=94 Identities=15% Similarity=0.132 Sum_probs=80.9
Q ss_pred CcEEEEEEecCCCCCCCChHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhhhhhCCCCCchhHHHHHhhcCCeEEEEec
Q 018397 13 QLFNHINSLFFNLGSGLSSSTAFVCSSTVALMAAFGVEVPKKEIAQLTCECEQFIGTQSGGMDQAISIMAKSGFAELIDF 92 (356)
Q Consensus 13 ~g~~i~i~s~IP~~~GLGSSaAl~va~~~al~~l~~~~ls~~el~~la~~~E~~~g~~~G~~D~~~~~~Gg~~~~~~~d~ 92 (356)
.|++|.|+++||+++|||+.||.++|++.+|+++++..++.+||+.++.+.. .|...|++|| ..+...
T Consensus 84 ~~v~I~l~K~IPv~aGLGGGSSdAAa~L~~Ln~lw~~~ls~~eL~~Lg~~LG---------aDVPffl~g~---tA~a~G 151 (289)
T COG1947 84 GGVSIHLDKNIPVGAGLGGGSSDAAAVLVALNELWGLGLSLEELAELGLRLG---------ADVPFFLSGG---TAFAEG 151 (289)
T ss_pred CCeeEEEEecCcccCcCccchHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhC---------CCcCeeeeCC---ceEEEE
Confidence 5899999999999999999999999999999999999999999999999874 7888888887 446676
Q ss_pred CCCeeEEeecCCCcEEEEEecCcchh
Q 018397 93 NPIRTTDVQLPAGGTFVVAHSLAESL 118 (356)
Q Consensus 93 ~~~~~~~~~~p~~~~~ll~~s~~~~~ 118 (356)
+....++++-++...++++.|++.-+
T Consensus 152 ~GE~l~~~~~~~~~~~vl~~P~v~vs 177 (289)
T COG1947 152 RGEKLEPLEDPPEKWYVLAKPGVGVS 177 (289)
T ss_pred ccceeeECCCCCCceEEEEeCCCCCC
Confidence 77778888755567788999987543
No 50
>KOG1537 consensus Homoserine kinase [Amino acid transport and metabolism]
Probab=99.31 E-value=3.7e-11 Score=108.69 Aligned_cols=226 Identities=19% Similarity=0.212 Sum_probs=149.2
Q ss_pred cEEEEEEecCCCCCCCChHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhhhh--------hCCCC--------------
Q 018397 14 LFNHINSLFFNLGSGLSSSTAFVCSSTVALMAAFGVEVPKKEIAQLTCECEQF--------IGTQS-------------- 71 (356)
Q Consensus 14 g~~i~i~s~IP~~~GLGSSaAl~va~~~al~~l~~~~ls~~el~~la~~~E~~--------~g~~~-------------- 71 (356)
+-.+.+.+-||.+.|+|||++..++.+...++...+.+++......+.-+|+. +|..+
T Consensus 94 ~Tk~hvtNPiplgrGigssgta~~aGv~l~ne~a~LGlsk~~mldy~lmierhpdn~~a~mmGgf~GSflr~l~e~E~~~ 173 (355)
T KOG1537|consen 94 TTKKHVTNPIPLGRGIGSSGTAKMAGVRLVNESADLGLSKGSMLDYSLMIERHPDNAVAEMMGGFLGSFLRALLESEAKV 173 (355)
T ss_pred ceeeeecCCccccccccchhhhhhhhheecchHhhcCCccccchhHHHHHhhChHHHHHHHHhhHHHHHHHHhCHhhhhh
Confidence 34677889999999999999999999999999888888887777776666631 01110
Q ss_pred -C-chhHH-HHHhhcCCeEEEEecCCCee-EEeecC--CCcEEEEEecCcchhhhhhcccchhhHHHHHHHHHHHHHHHh
Q 018397 72 -G-GMDQA-ISIMAKSGFAELIDFNPIRT-TDVQLP--AGGTFVVAHSLAESLKAITAASNYNNRVVECRLTAIVLAIKL 145 (356)
Q Consensus 72 -G-~~D~~-~~~~Gg~~~~~~~d~~~~~~-~~~~~p--~~~~~ll~~s~~~~~~~~~~~~~~~~r~~e~~~a~~~l~~~~ 145 (356)
| -.|+. ....||+. +.....|.+. +++.+| ++++|+++.|.....|.+
T Consensus 174 ~~~~ad~ilp~~~gg~~--li~~lpP~dlg~~~r~pw~~~lk~i~viP~Fel~T~k------------------------ 227 (355)
T KOG1537|consen 174 SGYHADNILPAIMGGFV--LIRNLPPLDLGKPLRFPWDKDLKFILVIPDFELPTKK------------------------ 227 (355)
T ss_pred cCCCHHHhcccccCCee--eecCCCcccccccccCCCCccceEEEEeccccccchh------------------------
Confidence 0 13333 34555532 1222222332 333443 467888887776432211
Q ss_pred CCCchhhhhhhccchhhhhhhhhhhccCCCCCCcccccCCCCHHHHHHHhhhhhhhhhhcCCChhhHHhhhhhHHHHHHH
Q 018397 146 GMKPQEAISKVKTLSDVEGLCVAFACKNGSSDPVFAVKEPYTALDIEKITEEKLTSIFANSSSSLDVLNAAKQYKLHQRA 225 (356)
Q Consensus 146 ~~~~~~~~~~~~~Lr~v~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~ 225 (356)
.+..++.++ -+.
T Consensus 228 ---------------------------------------------~R~vLPt~y-----------------------p~~ 239 (355)
T KOG1537|consen 228 ---------------------------------------------MRAVLPTEY-----------------------PMV 239 (355)
T ss_pred ---------------------------------------------hhhhcCccc-----------------------cce
Confidence 111122111 111
Q ss_pred hhHHhHHHHHHHHHHHHhcCCCchHHHHHHHHHHHH-HHHHhhhhcCCCChHHHHHHHHHHhC---CCceeEEeccCCcc
Q 018397 226 AHVYSEAKRVHAFKDTVSSNLSEEDKLKKLGDLMND-SHHSCSVLYECSCPELEELVNVCRNN---GALGARLTGAGWGG 301 (356)
Q Consensus 226 ~~~i~E~~rv~~~~~al~~~~~~~~~~~~lg~lm~~-sh~~lr~~~~vs~peld~lv~~a~~~---Ga~GaklsGaG~GG 301 (356)
.| +....|+..+..|+.++. .+......+|.+ -|+.+|.- ..|.++.+...+... |.+|..+|||| +
T Consensus 240 d~-V~NlqrlA~LttAl~~~p---~n~~L~y~~m~DkvhqPyRa~---LIPGl~~il~~~~p~t~pGl~GiclSGAG--P 310 (355)
T KOG1537|consen 240 DH-VWNLQRLAALTTALLEGP---DNVMLGYALMSDKVHQPYRAP---LIPGLEAILKAALPATYPGLFGICLSGAG--P 310 (355)
T ss_pred ee-eecHHHHHHHHHHHhcCC---CchhhhhhhhhccccCccccc---cCccHHHHHHhhCcccCCceeeEEecCCC--C
Confidence 12 222355566667776641 146677778876 58888765 589999999998874 99999999998 9
Q ss_pred eEEEEecCCcHHHHHHHHHHHHHhcccCCCcccCCCCcceEEEeecC-Cceee
Q 018397 302 CVVALVKESIDSQFILNLKEQFYQSRIDRGVINNNDLGLYVFASKPS-SGAAK 353 (356)
Q Consensus 302 ~vi~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~p~-~Ga~v 353 (356)
+++++.+ ++-+++-++|.+.|.+.+ .++.|-..+|. +||.+
T Consensus 311 T~lAlat-enf~eI~~~mv~~F~K~G----------~kcs~~~l~pa~Dga~v 352 (355)
T KOG1537|consen 311 TALALAT-ENFQEIGEKMVEAFWKVG----------HKCSVASLKPALDGAGV 352 (355)
T ss_pred eeEEEec-CcHHHHHHHHHHHHHhhC----------ceeeeEeeccccCCcce
Confidence 9999996 778999999999997655 47788888875 56654
No 51
>PRK05905 hypothetical protein; Provisional
Probab=99.30 E-value=2.3e-11 Score=112.95 Aligned_cols=91 Identities=14% Similarity=0.061 Sum_probs=76.0
Q ss_pred CcEEEEEEecCCCCCCCChHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhhhhhCCCCCchhHHHHHhh-cCCeEEEEe
Q 018397 13 QLFNHINSLFFNLGSGLSSSTAFVCSSTVALMAAFGVEVPKKEIAQLTCECEQFIGTQSGGMDQAISIMA-KSGFAELID 91 (356)
Q Consensus 13 ~g~~i~i~s~IP~~~GLGSSaAl~va~~~al~~l~~~~ls~~el~~la~~~E~~~g~~~G~~D~~~~~~G-g~~~~~~~d 91 (356)
+|+++.+.++||.++||||+||.++|++.+++++++ ++.+++.+++.++. .|...+++| | ..+..
T Consensus 85 ~~~~i~l~K~IP~~aGLGggSSDAAa~L~~Ln~l~~--ls~~~L~~ia~~lG---------ADVPFfl~g~~---~a~~~ 150 (258)
T PRK05905 85 NHFKIKIKKRIPIGSGLGSGSSNAAVLMKWILEFEG--INEINYKDVVNKLG---------SDIPFFLSGYK---TAYIS 150 (258)
T ss_pred CCeEEEEEeCCCCcCCCCCCchHHHHHHHHHHHHhC--CCHHHHHHHHHHhC---------CCcceEEeCCc---cEEEE
Confidence 589999999999999999999999999999999997 78999999998874 788778888 6 33566
Q ss_pred cCCCeeEEeecCCCcEEEEEecCcch
Q 018397 92 FNPIRTTDVQLPAGGTFVVAHSLAES 117 (356)
Q Consensus 92 ~~~~~~~~~~~p~~~~~ll~~s~~~~ 117 (356)
.+...+++++.|....++|++|++.-
T Consensus 151 G~GE~l~pl~~~~~~~~vlv~P~~~v 176 (258)
T PRK05905 151 DYGSQVEDLIGQFKLTYKVIFMNVNV 176 (258)
T ss_pred eeCceeEECCCCCCceEEEECCCCCC
Confidence 66667788765545668999998743
No 52
>KOG4644 consensus L-fucose kinase [Carbohydrate transport and metabolism]
Probab=99.22 E-value=6.8e-10 Score=108.63 Aligned_cols=211 Identities=22% Similarity=0.272 Sum_probs=139.0
Q ss_pred CcEEEEEEecCCCCCCCChHHHHHHHHHHHHHHHhCCCCCHHH----HHHHHHHhhhhhCCCCCchhHHHHHhhcCCeEE
Q 018397 13 QLFNHINSLFFNLGSGLSSSTAFVCSSTVALMAAFGVEVPKKE----IAQLTCECEQFIGTQSGGMDQAISIMAKSGFAE 88 (356)
Q Consensus 13 ~g~~i~i~s~IP~~~GLGSSaAl~va~~~al~~l~~~~ls~~e----l~~la~~~E~~~g~~~G~~D~~~~~~Gg~~~~~ 88 (356)
.||++..+|++|-|+|||.||-++...++|+....+.--..+. +.....+.|+++.+..||+||...++-|...-.
T Consensus 690 ~GfeihT~SdLPHGSGLGTSSIlA~TaLaAi~~aagr~~gTeaLiHailHtvlrlEQilTTGGGWQDQ~G~im~GIK~gr 769 (948)
T KOG4644|consen 690 CGFEIHTSSDLPHGSGLGTSSILACTALAAICAAAGRADGTEALIHAILHTVLRLEQILTTGGGWQDQCGAIMEGIKKGR 769 (948)
T ss_pred CceEeeccccCCCCCCcchHHHHHHHHHHHHHHhhccccchhHhHHHHHHHHHHHHHHhhcCCchhhhccchhhhhhhcc
Confidence 5899999999999999999999999999999988876544444 445566789988888999999988888853211
Q ss_pred EEecCC--CeeEEeecCC------CcEEEEEecCcchhhhhhcccchhhHHHHHHHHHHHHHHHhCCCchhhhhhhccch
Q 018397 89 LIDFNP--IRTTDVQLPA------GGTFVVAHSLAESLKAITAASNYNNRVVECRLTAIVLAIKLGMKPQEAISKVKTLS 160 (356)
Q Consensus 89 ~~d~~~--~~~~~~~~p~------~~~~ll~~s~~~~~~~~~~~~~~~~r~~e~~~a~~~l~~~~~~~~~~~~~~~~~Lr 160 (356)
-.-..+ ...+++.+|. +-++++++|+. . +.|.++|+.. +|
T Consensus 770 ~rael~~~ie~eeiTipe~f~ekL~dhLLLVYTGK----T--------------RLAkNLLQdV--------------iR 817 (948)
T KOG4644|consen 770 CRAELNHGIEHEEITIPEEFREKLEDHLLLVYTGK----T--------------RLAKNLLQDV--------------IR 817 (948)
T ss_pred chhhccCCceeeeecCCHHHHHHHhhcEEEEEeCc----h--------------HHHHHHHHHH--------------HH
Confidence 111112 3567777775 46788888884 1 2344444332 11
Q ss_pred hhhhhhhhhhccCCCCCCcccccCCCCHHHHHHHhhhhhhhhhhcCCChhhHHhhhhhHHHHHHHhhHHhHHHHHHHHHH
Q 018397 161 DVEGLCVAFACKNGSSDPVFAVKEPYTALDIEKITEEKLTSIFANSSSSLDVLNAAKQYKLHQRAAHVYSEAKRVHAFKD 240 (356)
Q Consensus 161 ~v~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~i~E~~rv~~~~~ 240 (356)
.. |+ + .+ ...+.+..+. +.+.++..
T Consensus 818 n~------fa-----------------r----------~~-------------------a~~Q~ah~l~---~~tdecAe 842 (948)
T KOG4644|consen 818 NF------FA-----------------R----------CK-------------------ATKQKAHKLA---EATDECAE 842 (948)
T ss_pred HH------HH-----------------h----------hH-------------------HHHHHHHHHH---HHHHHHHH
Confidence 10 00 0 00 0112222221 23456667
Q ss_pred HHhcCCCchHHHHHHHHHHHHHHHHhhhh-cCCCChHHHHHHHHHHh--CCCceeEEeccCCcceEEEEecCCcHHHHH
Q 018397 241 TVSSNLSEEDKLKKLGDLMNDSHHSCSVL-YECSCPELEELVNVCRN--NGALGARLTGAGWGGCVVALVKESIDSQFI 316 (356)
Q Consensus 241 al~~~~~~~~~~~~lg~lm~~sh~~lr~~-~~vs~peld~lv~~a~~--~Ga~GaklsGaG~GG~vi~l~~~~~~~~~~ 316 (356)
.++++ .++.+|+++...|+..+-. -+|-.+.+.+|.+.... .| --+...|||+||+++-+.+..+..+-+
T Consensus 843 gf~kG-----sl~LlgecL~~YweqKk~MapgCEPl~Vr~lldmLaph~hg-esgw~AGAGGGGFiYLl~kEpqqkeai 915 (948)
T KOG4644|consen 843 GFEKG-----SLELLGECLEHYWEQKKFMAPGCEPLNVRELLDMLAPHKHG-ESGWAAGAGGGGFIYLLIKEPQQKEAI 915 (948)
T ss_pred HHhcC-----cHHHHHHHHHHHHHhhhccCCCCCCCcHHHHHHHhcccccc-ccchhccCCCCcEEEEEecCCCCHHHH
Confidence 77776 4999999999888764422 26777888888887543 23 234588999999999999875444333
No 53
>PRK04181 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional
Probab=99.00 E-value=1.6e-09 Score=101.01 Aligned_cols=94 Identities=11% Similarity=0.016 Sum_probs=77.5
Q ss_pred CcEEEEEEecCCCCCCCChHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhhhhhCCCCCchhHHHHHhh-cCCeEEEEe
Q 018397 13 QLFNHINSLFFNLGSGLSSSTAFVCSSTVALMAAFGVEVPKKEIAQLTCECEQFIGTQSGGMDQAISIMA-KSGFAELID 91 (356)
Q Consensus 13 ~g~~i~i~s~IP~~~GLGSSaAl~va~~~al~~l~~~~ls~~el~~la~~~E~~~g~~~G~~D~~~~~~G-g~~~~~~~d 91 (356)
+|+++.++++||.++|||||||.++|++.+++++++.+++++++.++|.++. .|...+++| + ..+..
T Consensus 85 ~gv~I~i~K~IP~gaGLGggSSdAAA~L~aln~l~~~~ls~~eL~~lA~~lG---------aDvPffl~~~~---~a~~~ 152 (257)
T PRK04181 85 KKKAIEVEKNIPTGAGLGGGSSDAATFLLMLNEILNLKLSLEELAEIGSKVG---------ADVAFFISGYK---SANVS 152 (257)
T ss_pred CceEEEEEeCCCCcCcccccHHHHHHHHHHHHHHhCCCcCHHHHHHHHHHhC---------CCccEEecCCc---eEEEE
Confidence 5899999999999999999999999999999999999999999999998874 788778887 5 33666
Q ss_pred cCCCeeEEeecCCCcEEEEEecCcchhh
Q 018397 92 FNPIRTTDVQLPAGGTFVVAHSLAESLK 119 (356)
Q Consensus 92 ~~~~~~~~~~~p~~~~~ll~~s~~~~~~ 119 (356)
.+...+++++.+.. .++|++|+.+-+|
T Consensus 153 G~Ge~l~~l~~~~~-~~~lv~P~~~vsT 179 (257)
T PRK04181 153 GIGEIVEEFEEEIL-NLEIFTPNIFCST 179 (257)
T ss_pred eeCCeeEECCCCCC-eEEEECCCCCcCH
Confidence 66666777753223 3889999875443
No 54
>COG4542 PduX Protein involved in propanediol utilization, and related proteins (includes coumermycin biosynthetic protein), possible kinase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=98.96 E-value=5.2e-08 Score=88.24 Aligned_cols=182 Identities=21% Similarity=0.207 Sum_probs=118.6
Q ss_pred CcEEEEEEecCCCCCCCChHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhhhhhCCCCCchhHHHHHhhcCCeEEEEec
Q 018397 13 QLFNHINSLFFNLGSGLSSSTAFVCSSTVALMAAFGVEVPKKEIAQLTCECEQFIGTQSGGMDQAISIMAKSGFAELIDF 92 (356)
Q Consensus 13 ~g~~i~i~s~IP~~~GLGSSaAl~va~~~al~~l~~~~ls~~el~~la~~~E~~~g~~~G~~D~~~~~~Gg~~~~~~~d~ 92 (356)
.|+++.+.|+||.|.||+||+|..||++.|+..++|..++..+|+++|..+|- .|-. +|-+ +.++|.
T Consensus 82 ~~i~l~lqSsIPvgKG~ASSTADl~At~~A~A~~l~~~l~es~iakLcv~iEP--------tDsi--iF~~---~tlFd~ 148 (293)
T COG4542 82 TGIDLLLQSSIPVGKGMASSTADLVATARATARFLGRELRESEIAKLCVSIEP--------TDSI--IFDK---ATLFDQ 148 (293)
T ss_pred CCeeEEEeccccccccccccHHHHHHHHHHHHHHhCCCCCHHHHHHHHhhcCC--------ccce--eccc---ceeehh
Confidence 57999999999999999999999999999999999999999999999999993 1211 2323 345565
Q ss_pred CCCeeE-EeecCCCcEEEEEecCcchhhhhhcccchhh-HHHHHHHHHHHHHHHhCCCchhhhhhhccchhhhhhhhhhh
Q 018397 93 NPIRTT-DVQLPAGGTFVVAHSLAESLKAITAASNYNN-RVVECRLTAIVLAIKLGMKPQEAISKVKTLSDVEGLCVAFA 170 (356)
Q Consensus 93 ~~~~~~-~~~~p~~~~~ll~~s~~~~~~~~~~~~~~~~-r~~e~~~a~~~l~~~~~~~~~~~~~~~~~Lr~v~~~~~~~~ 170 (356)
+...+. -..-++.+.+++..++. +..+ ..|+. ++-|. .+
T Consensus 149 r~g~~~~~~g~~PpL~ilv~e~~~---~v~T--~~y~q~~r~e~-----------------------~~----------- 189 (293)
T COG4542 149 REGRVIEFLGEMPPLHILVFEGKG---TVET--VDYNQPPRGEK-----------------------LL----------- 189 (293)
T ss_pred ccchHHHhcCCCCceEEEEEcCCC---ceee--eeccCCchhhh-----------------------hh-----------
Confidence 543221 22222357777777664 2222 12331 10000 00
Q ss_pred ccCCCCCCcccccCCCCHHHHHHHhhhhhhhhhhcCCChhhHHhhhhhHHHHHHHhhHHhHHHHHHHHHHHHhcCCCchH
Q 018397 171 CKNGSSDPVFAVKEPYTALDIEKITEEKLTSIFANSSSSLDVLNAAKQYKLHQRAAHVYSEAKRVHAFKDTVSSNLSEED 250 (356)
Q Consensus 171 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~i~E~~rv~~~~~al~~~~~~~~ 250 (356)
++. .+ ++.+.. + +..|+..+
T Consensus 190 ------------------~~~--------~e--------------------~~~l~~------~---v~~A~~~~----- 209 (293)
T COG4542 190 ------------------APL--------AE--------------------LGNLIN------L---VEKALKVG----- 209 (293)
T ss_pred ------------------hhH--------HH--------------------HHHHHH------H---HHHHHccC-----
Confidence 000 00 111111 1 22555655
Q ss_pred HHHHHHHHHHHHHHHhhhhcCCCChHHHHHHHHHHhCCCceeEEeccCCcceEEEEecCCc
Q 018397 251 KLKKLGDLMNDSHHSCSVLYECSCPELEELVNVCRNNGALGARLTGAGWGGCVVALVKESI 311 (356)
Q Consensus 251 ~~~~lg~lm~~sh~~lr~~~~vs~peld~lv~~a~~~Ga~GaklsGaG~GG~vi~l~~~~~ 311 (356)
|...+|+.-.-|-..-++. ..-|.++.|.+++.+.+++|--..-+ |++++|.-+..
T Consensus 210 ~~~~lG~AAT~SAv~~Q~~--LPK~~~~~lL~l~e~~~~~Gv~VAHS---GtmlGli~D~~ 265 (293)
T COG4542 210 DPKLLGEAATLSAVKNQDR--LPKPGLNELLRLVEETCAIGVIVAHS---GTMLGLIYDRK 265 (293)
T ss_pred CHHHHHHHHHHHHHhhccc--cCchhHHHHHHHHHHhcccceEEecc---CceEEeeeccc
Confidence 4889998887765544433 47789999999999988888888776 48888885443
No 55
>PLN02407 diphosphomevalonate decarboxylase
Probab=98.95 E-value=1.2e-07 Score=90.93 Aligned_cols=60 Identities=22% Similarity=0.202 Sum_probs=51.6
Q ss_pred EEEEEe--cCCCCCCCChHHHHHHHHHHHHHHHhCCCCC-HHHHHHHHHHhhhhhCCCCCchhHHHHHhhcC
Q 018397 16 NHINSL--FFNLGSGLSSSTAFVCSSTVALMAAFGVEVP-KKEIAQLTCECEQFIGTQSGGMDQAISIMAKS 84 (356)
Q Consensus 16 ~i~i~s--~IP~~~GLGSSaAl~va~~~al~~l~~~~ls-~~el~~la~~~E~~~g~~~G~~D~~~~~~Gg~ 84 (356)
++.|.| ++|.++|||||||..+|++.|+..+++++++ +.++..+|+. | ++.|.- ++|||+
T Consensus 105 ~~~I~S~N~~PtaaGLaSSAs~~aAl~~al~~~~~~~~~~~~~ls~lAr~-----G---SGSa~r-S~~Gg~ 167 (343)
T PLN02407 105 HVHIASYNNFPTAAGLASSAAGFACLVFALAKLMNVKEDFPGELSAIARQ-----G---SGSACR-SLYGGF 167 (343)
T ss_pred cEEEEeccCCccccchHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHhc-----c---ChHHHH-HhhCCe
Confidence 567777 9999999999999999999999999999999 9999999984 3 235555 799994
No 56
>COG3407 MVD1 Mevalonate pyrophosphate decarboxylase [Lipid metabolism]
Probab=98.79 E-value=1.4e-06 Score=82.97 Aligned_cols=63 Identities=19% Similarity=0.191 Sum_probs=54.2
Q ss_pred CcEEEEEEecCCCCCCCChHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhhhhhCCCCCchhHHHHHhhcC
Q 018397 13 QLFNHINSLFFNLGSGLSSSTAFVCSSTVALMAAFGVEVPKKEIAQLTCECEQFIGTQSGGMDQAISIMAKS 84 (356)
Q Consensus 13 ~g~~i~i~s~IP~~~GLGSSaAl~va~~~al~~l~~~~ls~~el~~la~~~E~~~g~~~G~~D~~~~~~Gg~ 84 (356)
..+.+...++.|.+.||+||||-.+|++.|++.++++.++..++.++|+.+- |+.+ -+++||+
T Consensus 89 ~~~~i~s~n~~ptaaGLaSSaag~AAl~~Al~~~~~~~~d~~~lS~~AR~gS---GSa~------RS~~Gg~ 151 (329)
T COG3407 89 FKVKIVSYNNFPTAAGLASSAAGAAALAAALNRLYDLDLDDEFLSRIARLGS---GSAS------RSIFGGF 151 (329)
T ss_pred ceEEEEEecCCCccccccccHHHHHHHHHHHHhhhccCCCHHHHHHHHHHhc---cchh------hhhcCCe
Confidence 4578889999999999999999999999999999999999999999998753 2222 2689995
No 57
>KOG2833 consensus Mevalonate pyrophosphate decarboxylase [Lipid transport and metabolism]
Probab=98.76 E-value=2e-06 Score=80.23 Aligned_cols=62 Identities=19% Similarity=0.265 Sum_probs=53.4
Q ss_pred cEEEEEEecCCCCCCCChHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhhhhhCCCCCchhHHHHHhhcC
Q 018397 14 LFNHINSLFFNLGSGLSSSTAFVCSSTVALMAAFGVEVPKKEIAQLTCECEQFIGTQSGGMDQAISIMAKS 84 (356)
Q Consensus 14 g~~i~i~s~IP~~~GLGSSaAl~va~~~al~~l~~~~ls~~el~~la~~~E~~~g~~~G~~D~~~~~~Gg~ 84 (356)
.++|.-.++.|..+||.||||=-+|++.+|+++++++.+++++-.+|+.+- |+.| =++|||+
T Consensus 105 ~lHI~S~nNFPtAAGLASSAAG~Aalv~alarly~l~~~~~els~iAR~GS---GSAC------RSl~GG~ 166 (395)
T KOG2833|consen 105 KLHIASVNNFPTAAGLASSAAGFAALVLALARLYGLDDSPEELSRIARQGS---GSAC------RSLYGGF 166 (395)
T ss_pred eEEEEecCCCcchhhhhhhhhhHHHHHHHHHHHhCCCCCHHHHHHHHhccC---chhh------hhhhcce
Confidence 467777889999999999999999999999999999999999999998754 4443 2699994
No 58
>COG3890 ERG8 Phosphomevalonate kinase [Lipid metabolism]
Probab=98.46 E-value=2e-05 Score=72.48 Aligned_cols=88 Identities=24% Similarity=0.220 Sum_probs=62.2
Q ss_pred CCCCChHHHHHHHHH--HHHHHHhCCCCCH-HHHHHHHHHhhh-hhCCCCCchhHHHHHhhcCCeEEEEecCCCeeEEe-
Q 018397 26 GSGLSSSTAFVCSST--VALMAAFGVEVPK-KEIAQLTCECEQ-FIGTQSGGMDQAISIMAKSGFAELIDFNPIRTTDV- 100 (356)
Q Consensus 26 ~~GLGSSaAl~va~~--~al~~l~~~~ls~-~el~~la~~~E~-~~g~~~G~~D~~~~~~Gg~~~~~~~d~~~~~~~~~- 100 (356)
..|||||||+++.++ .++....+.+++. .++-++|+.+-. -.|.-+++-|..+++||+ +++-.|.|.....+
T Consensus 107 KtGlGSSAa~~tsLt~~lfls~~~~~nvd~k~eIhklaqiAhc~aQggIGSGfDiaaA~fGs---iiyrRF~p~li~~l~ 183 (337)
T COG3890 107 KTGLGSSAAVATSLTCGLFLSHANATNVDEKGEIHKLAQIAHCYAQGGIGSGFDIAAAIFGS---IIYRRFEPGLIPKLR 183 (337)
T ss_pred cCCCcchhHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHhCCCCccchhhHhhhcc---eEEeecCcchhhhhH
Confidence 689999999999998 4444435556765 778888888764 456666679999999998 66766666432222
Q ss_pred -----ecCCCcEEEEEecCcch
Q 018397 101 -----QLPAGGTFVVAHSLAES 117 (356)
Q Consensus 101 -----~~p~~~~~ll~~s~~~~ 117 (356)
.+. ++.++..+....+
T Consensus 184 qig~~nfg-~y~LmmGd~a~gS 204 (337)
T COG3890 184 QIGAVNFG-DYYLMMGDQAIGS 204 (337)
T ss_pred hhCccccc-CeeeeecccccCc
Confidence 232 6888888776533
No 59
>COG1829 Predicted archaeal kinase (sugar kinase superfamily) [General function prediction only]
Probab=98.44 E-value=2.1e-05 Score=72.58 Aligned_cols=94 Identities=16% Similarity=0.092 Sum_probs=73.1
Q ss_pred cEEEEEEecCCCCCCCChHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhhhhhCCCCCchhHHHHHhhcCCeEEEEecC
Q 018397 14 LFNHINSLFFNLGSGLSSSTAFVCSSTVALMAAFGVEVPKKEIAQLTCECEQFIGTQSGGMDQAISIMAKSGFAELIDFN 93 (356)
Q Consensus 14 g~~i~i~s~IP~~~GLGSSaAl~va~~~al~~l~~~~ls~~el~~la~~~E~~~g~~~G~~D~~~~~~Gg~~~~~~~d~~ 93 (356)
++.+.+.+++|+|+|+|-|+|.+.+.+.+++..++.+ .++.++.|+.+|-..+ +|+.|..+.++||. .+.+...
T Consensus 74 ~~~v~~~~~~P~G~G~G~Sga~AL~~Ala~a~~~~~~--~~~a~~~AH~aEV~~g--tGLGDVvAq~~GGl--ViR~~pG 147 (283)
T COG1829 74 GVGVRIESPVPLGCGYGVSGAGALGTALALAEELGLG--EESAARIAHVAEVENG--TGLGDVVAQYTGGL--VIRVKPG 147 (283)
T ss_pred CcceEEEecCCCCcccchhHHHHHHHHHHHHhhcCCC--HHHHHHHHHHHHHHcC--CCchHHHHHhcCcE--EEEecCC
Confidence 4679999999999999999999999999999988755 8889999999985444 56789999999993 3333322
Q ss_pred -C--CeeEEeecCCCcEEEEEecC
Q 018397 94 -P--IRTTDVQLPAGGTFVVAHSL 114 (356)
Q Consensus 94 -~--~~~~~~~~p~~~~~ll~~s~ 114 (356)
| ..++.++.|. ++++.+..+
T Consensus 148 ~Pg~~~vd~Ip~~~-~~V~~~~~g 170 (283)
T COG1829 148 GPGEGEVDRIPVPG-LRVITISLG 170 (283)
T ss_pred CCCeEEEEEeecCC-ceEEEEEcc
Confidence 2 2567777765 777666555
No 60
>KOG4519 consensus Phosphomevalonate kinase [Lipid transport and metabolism]
Probab=97.77 E-value=0.0033 Score=59.52 Aligned_cols=66 Identities=24% Similarity=0.398 Sum_probs=44.4
Q ss_pred CCCCChHHHHHHHHHHHHHHHhCC----------CCC--HHH-HHHHHHHhh-hhhCCCCCchhHHHHHhhcCCeEEEEe
Q 018397 26 GSGLSSSTAFVCSSTVALMAAFGV----------EVP--KKE-IAQLTCECE-QFIGTQSGGMDQAISIMAKSGFAELID 91 (356)
Q Consensus 26 ~~GLGSSaAl~va~~~al~~l~~~----------~ls--~~e-l~~la~~~E-~~~g~~~G~~D~~~~~~Gg~~~~~~~d 91 (356)
..|||||||++.+++.++...++. +++ ..+ +-.+|+.+- ...|.-+++.|..+++||. ..|..
T Consensus 152 KTGLGSSAam~T~lv~~ll~sl~~~~~d~~~k~~k~d~s~~~viHnlAQ~aHC~AQGKvGSGFDV~aA~yGS---~rYrR 228 (459)
T KOG4519|consen 152 KTGLGSSAAMTTALVAALLHSLGVVDLDDPCKEGKFDCSDLDVIHNLAQTAHCLAQGKVGSGFDVSAAVYGS---QRYRR 228 (459)
T ss_pred ccCccchHHHHHHHHHHHHHhhcceecCCCccccccCchHHHHHHHHHHHHHHHhcCCccCCcceehhhccc---eeeee
Confidence 579999999999999887776642 122 233 334454442 1347777779999999987 34555
Q ss_pred cCC
Q 018397 92 FNP 94 (356)
Q Consensus 92 ~~~ 94 (356)
|.|
T Consensus 229 F~P 231 (459)
T KOG4519|consen 229 FSP 231 (459)
T ss_pred CCH
Confidence 544
No 61
>PF03460 NIR_SIR_ferr: Nitrite/Sulfite reductase ferredoxin-like half domain; InterPro: IPR005117 Sulphite reductases (SiRs) and related nitrite reductases (NiRs) catalyse the six-electron reduction reactions of sulphite to sulphide, and nitrite to ammonia, respectively. The Escherichia coli SiR enzyme is a complex composed of two proteins, a flavoprotein alpha-component (SiR-FP) and a hemoprotein beta-component (SiR-HP), and has an alpha(8)beta(4) quaternary structure []. SiR-FP contains both FAD and FMN, while SiR-HP contains a Fe(4)S(4) cluster coupled to a sirohaem through a cysteine bridge. Electrons are transferred from NADPH to FAD, and on to FMN in SiR-FP, from which they are transferred to the metal centre of SiR-HP, where they reduce the siroheme-bound sulphite. SiR-HP has a two-fold symmetry, which generates a distinctive three-domain alpha/beta fold that controls assembly and reactivity []. This entry describes the ferrodoxin-like (alpha/beta sandwich) domain, which consists of a duplication containing two subdomains of this fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3B0H_A 4GEP_A 2GEP_A 2AOP_A 5AOP_A 6GEP_A 4AOP_A 1AOP_A 3AOP_A 8GEP_A ....
Probab=74.76 E-value=7.7 Score=28.00 Aligned_cols=48 Identities=25% Similarity=0.207 Sum_probs=40.5
Q ss_pred CCChHHHHHHHHHHhCCCceeEEeccCCcceEEEEecCCcHHHHHHHHHH
Q 018397 272 CSCPELEELVNVCRNNGALGARLTGAGWGGCVVALVKESIDSQFILNLKE 321 (356)
Q Consensus 272 vs~peld~lv~~a~~~Ga~GaklsGaG~GG~vi~l~~~~~~~~~~~~l~~ 321 (356)
++...+..|.+++++.|..-.++|... +..+.-++.++++++.+.|.+
T Consensus 21 i~~~~l~~la~ia~~yg~~~irlT~~Q--~l~l~~v~~~~~~~i~~~L~~ 68 (69)
T PF03460_consen 21 ISAEQLRALAEIAEKYGDGEIRLTTRQ--NLQLRGVPEENLPAIFEELKE 68 (69)
T ss_dssp EEHHHHHHHHHHHHHHSTSEEEEETTS--CEEEEEEEGGGHHHHHHHHHH
T ss_pred ECHHHHHHHHHHHHHhCCCeEEECCCC--eEEEeCCCHHHHHHHHHHHHc
Confidence 567789999999999988778999655 888888999999999988854
No 62
>COG2221 DsrA Dissimilatory sulfite reductase (desulfoviridin), alpha and beta subunits [Energy production and conversion]
Probab=52.09 E-value=21 Score=34.17 Aligned_cols=47 Identities=13% Similarity=0.190 Sum_probs=33.6
Q ss_pred CCChHHHHHHHHHHhCCCceeEEeccCCcceEEEEecCCcHHHHHHHHH
Q 018397 272 CSCPELEELVNVCRNNGALGARLTGAGWGGCVVALVKESIDSQFILNLK 320 (356)
Q Consensus 272 vs~peld~lv~~a~~~Ga~GaklsGaG~GG~vi~l~~~~~~~~~~~~l~ 320 (356)
+|++.|..++++|.+.|.-..++|+-+ |..+-.++.+.++++.+.|+
T Consensus 42 l~~e~Lr~i~diAekyG~G~i~iT~rq--g~ei~~i~~e~~~~v~~~L~ 88 (317)
T COG2221 42 LSAETLRKIADIAEKYGDGLIHITSRQ--GLEIPGISPEDADDVVEELR 88 (317)
T ss_pred cCHHHHHHHHHHHHHhCCCeEEEEecC--ceEeccCCHHHHHHHHHHHH
Confidence 456677777777777776677777655 66776666677777777775
No 63
>PF06153 DUF970: Protein of unknown function (DUF970); InterPro: IPR010375 This is a family of uncharacterised bacterial proteins.; PDB: 3M05_A.
Probab=38.43 E-value=59 Score=26.25 Aligned_cols=51 Identities=18% Similarity=0.253 Sum_probs=34.2
Q ss_pred HHHHHHHHHhCCCceeEEeccCC----cceEE-EEecCCcHHHHHHHHHHHHHhcc
Q 018397 277 LEELVNVCRNNGALGARLTGAGW----GGCVV-ALVKESIDSQFILNLKEQFYQSR 327 (356)
Q Consensus 277 ld~lv~~a~~~Ga~GaklsGaG~----GG~vi-~l~~~~~~~~~~~~l~~~~~~~~ 327 (356)
-+.+.+...+.|....|++-.|+ |-+.+ .=+++++++++++-|++...++.
T Consensus 13 a~~l~~~L~~~g~~~TkLsstGGFLr~GNtTlliGvede~v~~vl~iIk~~c~~R~ 68 (109)
T PF06153_consen 13 ADDLSDALNENGFRVTKLSSTGGFLREGNTTLLIGVEDEKVDEVLEIIKENCKKRE 68 (109)
T ss_dssp HHHHHHHHHHTT--EEEEEEEETTTTEEEEEEEEEEEGGGHHHHHHHHHHHH--EE
T ss_pred HHHHHHHHHHCCceEEEEecccceeccCCEEEEEEecHHHHHHHHHHHHHhhcCce
Confidence 46777777888988889987772 33344 44466799999999998876544
No 64
>PF09182 PuR_N: Bacterial purine repressor, N-terminal; InterPro: IPR015265 The N-terminal domain of the bacterial purine repressor PuR is a winged-helix domain, a subdivision of the HTH structural family. It consists of a canonical arrangement of secondary structures: a1-b1-a2-T-a3-b2-W-b3, where a2-T-a3 is the HTH motif, a3 is the recognition helix, and W is the wing. The domain allows for recognition of a conserved CGAA sequence in the centre of a DNA PurBox, resulting in binding to the major groove of DNA []. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 1O57_B 1P4A_D.
Probab=38.02 E-value=1.7e+02 Score=21.71 Aligned_cols=60 Identities=22% Similarity=0.255 Sum_probs=32.4
Q ss_pred HHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHhhhhcCCCChHHHHHHHHHHhCCCcee--EEeccCCc
Q 018397 233 KRVHAFKDTVSSNLSEEDKLKKLGDLMNDSHHSCSVLYECSCPELEELVNVCRNNGALGA--RLTGAGWG 300 (356)
Q Consensus 233 ~rv~~~~~al~~~~~~~~~~~~lg~lm~~sh~~lr~~~~vs~peld~lv~~a~~~Ga~Ga--klsGaG~G 300 (356)
.|+..+..-|.++.+.--.+..|.+.++.+--+..++ ++-+.+...+.| +|- -+.||+||
T Consensus 4 eRlv~it~~L~~~P~~lisL~~Fae~f~~AKSsISED-------l~iik~~~~~~g-~G~ieT~~GaaGG 65 (70)
T PF09182_consen 4 ERLVAITKYLLENPNKLISLTYFAERFGAAKSSISED-------LSIIKETFEKEG-LGRIETVPGAAGG 65 (70)
T ss_dssp HHHHHHHHHHHTSTT--EEHHHHHHHHT--HHHHHHH-------HHHHHHHHHHTT-SEEEEEE-STT-E
T ss_pred hHHHHHHHHHHcCCcceEcHHHHHHHhcccccchHHH-------HHHHHHHHHHcC-CceEEEecCCCCC
Confidence 3444455555543211123777777777666665555 677777777777 566 56666654
No 65
>PRK04181 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional
Probab=31.55 E-value=37 Score=31.65 Aligned_cols=27 Identities=15% Similarity=0.326 Sum_probs=20.1
Q ss_pred CChHHHHHHHHHHhCCCceeEEeccCCcceEEEEec
Q 018397 273 SCPELEELVNVCRNNGALGARLTGAGWGGCVVALVK 308 (356)
Q Consensus 273 s~peld~lv~~a~~~Ga~GaklsGaG~GG~vi~l~~ 308 (356)
.+|++.++.+ .++.|||+| .|++++-+
T Consensus 229 ~~P~i~~~~~-------~~~~mSGSG--stvF~l~~ 255 (257)
T PRK04181 229 LYPALKDYLG-------EDWFFSGSG--SSFFRVKR 255 (257)
T ss_pred hCHHHHHHhc-------CCcEEeCcC--cceEEEee
Confidence 3677777743 466899998 99998753
No 66
>TIGR01743 purR_Bsub pur operon repressor, Bacillus subtilis type. This model represents the puring operon repressor PurR of low-GC Gram-positive bacteria. This homodimeric repressor contains a large region homologous to phosphoribosyltransferases and is inhibited by 5-phosphoribosyl 1-pyrophosphate.
Probab=25.92 E-value=2.7e+02 Score=26.20 Aligned_cols=68 Identities=13% Similarity=0.241 Sum_probs=40.5
Q ss_pred HHHHHHHHHHHHHHhhhhcCCCChHHHHHHHHHHhCCCcee--EEeccCCcceEEEEecCCcHHHHHHHHHHHHHhcc
Q 018397 252 LKKLGDLMNDSHHSCSVLYECSCPELEELVNVCRNNGALGA--RLTGAGWGGCVVALVKESIDSQFILNLKEQFYQSR 327 (356)
Q Consensus 252 ~~~lg~lm~~sh~~lr~~~~vs~peld~lv~~a~~~Ga~Ga--klsGaG~GG~vi~l~~~~~~~~~~~~l~~~~~~~~ 327 (356)
+..|.+..+.+-.+. ++.+.-+.+...+.| +|- -+.||.||=-.+-...++.++++.+.|.+.+.+..
T Consensus 24 l~~f~~~~~~aks~i-------sed~~i~~~~~~~~~-~g~~~t~~ga~ggv~~~p~~~~~~~~~~~~~l~~~l~~~~ 93 (268)
T TIGR01743 24 LNFFSERYESAKSSI-------SEDIVIIKETFEKFG-IGKLLTVPGAAGGVKYIPKMSQAEAEEFVEELCQSLSEPE 93 (268)
T ss_pred HHHHHHHhccccchh-------hhhHHHHHHHHHhcC-CceEEEeCCCCCCeEEEeCCCHHHHHHHHHHHHHHHHHCC
Confidence 555555554433332 344677777777766 465 56677766333333334567888888888886543
No 67
>PF07862 Nif11: Nitrogen fixation protein of unknown function; InterPro: IPR012903 This domain is found in the cyanobacteria, and the nitrogen-fixing proteobacterium Azotobacter vinelandii and may be involved in nitrogen fixation, but no role has been assigned [].
Probab=24.13 E-value=1.5e+02 Score=19.66 Aligned_cols=36 Identities=25% Similarity=0.378 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHHHhhhhcCCCChHHHHHHHHHHhCC
Q 018397 251 KLKKLGDLMNDSHHSCSVLYECSCPELEELVNVCRNNG 288 (356)
Q Consensus 251 ~~~~lg~lm~~sh~~lr~~~~vs~peld~lv~~a~~~G 288 (356)
+++.|-+.+.........+-.|. ..+.++.+|++.|
T Consensus 5 ~l~~Fl~~~~~d~~l~~~l~~~~--~~~e~~~lA~~~G 40 (49)
T PF07862_consen 5 SLKAFLEKVKSDPELREQLKACQ--NPEEVVALAREAG 40 (49)
T ss_pred HHHHHHHHHhcCHHHHHHHHhcC--CHHHHHHHHHHcC
Confidence 35555555554444433333233 4588888998876
No 68
>PF08060 NOSIC: NOSIC (NUC001) domain; InterPro: IPR012976 This is the central domain in Nop56/SIK1-like proteins [].; PDB: 3PLA_K 3ICX_B 3ID6_A 3ID5_E 3NVM_A 3NMU_B 2NNW_C 3NVI_A 3NVK_A 2OZB_E ....
Probab=21.73 E-value=1.6e+02 Score=20.19 Aligned_cols=32 Identities=31% Similarity=0.369 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHHHHhhhhcCCCChHHHHHHHH
Q 018397 252 LKKLGDLMNDSHHSCSVLYECSCPELEELVNV 283 (356)
Q Consensus 252 ~~~lg~lm~~sh~~lr~~~~vs~peld~lv~~ 283 (356)
.+.+-+-++.-|.-+|+.|+.--||++.++.-
T Consensus 9 ~~~id~ei~~~~~~lre~Y~~~FPEL~~lv~~ 40 (53)
T PF08060_consen 9 LDDIDKEINLLHMRLREWYSWHFPELESLVPN 40 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTTSTTHHHHS-S
T ss_pred HHHHHHHHHHHHHHHHHHHHccchhHHHHcCC
Confidence 56666778888889999999999999988753
No 69
>TIGR03798 ocin_TIGR03798 bacteriocin propeptide, TIGR03798 family. This model describes a conserved, fairly long (about 65 residue) propeptide region for a family of putative microcins, that is, bacteriocins of small size. Members of the seed alignment tend to have the Gly-Gly motif as the last two residues of the matched region. This is a cleavage site for a combination processing/export ABC transporter with a peptidase domain.
Probab=21.69 E-value=1.5e+02 Score=21.04 Aligned_cols=35 Identities=17% Similarity=0.185 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHhhhhcCCCChHHHHHHHHHHhCC
Q 018397 252 LKKLGDLMNDSHHSCSVLYECSCPELEELVNVCRNNG 288 (356)
Q Consensus 252 ~~~lg~lm~~sh~~lr~~~~vs~peld~lv~~a~~~G 288 (356)
++.|-+.|..++.....+..+++ .+.++++|++.|
T Consensus 4 l~~Fl~~~~~d~~L~~~l~~~~~--~e~~~~lA~~~G 38 (64)
T TIGR03798 4 LKAFLEKVKTDPDLREKLKAAED--PEDRVAIAKEAG 38 (64)
T ss_pred HHHHHHHHHcCHHHHHHHHHcCC--HHHHHHHHHHcC
Confidence 45555555555444443333333 467777777654
Done!