Query 018397
Match_columns 356
No_of_seqs 152 out of 1411
Neff 7.7
Searched_HMMs 29240
Date Mon Mar 25 14:37:31 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018397.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/018397hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3v2u_C Protein GAL3; rossmann 100.0 1.8E-58 6.1E-63 464.9 29.0 339 11-355 144-519 (520)
2 2a2c_A N-acetylgalactosamine k 100.0 1E-49 3.4E-54 400.9 34.3 325 12-355 147-476 (478)
3 1pie_A Galactokinase; galactos 100.0 6.1E-44 2.1E-48 353.4 34.2 275 13-355 140-417 (419)
4 1wuu_A Galactokinase; galactos 100.0 1.8E-42 6E-47 340.8 30.0 268 12-356 129-399 (399)
5 2cz9_A Probable galactokinase; 100.0 2.7E-41 9.2E-46 325.9 30.9 264 13-353 86-350 (350)
6 3k85_A D-glycero-D-manno-hepto 100.0 2.9E-37 1E-41 299.4 14.6 218 12-321 96-321 (357)
7 1kvk_A MK, mevalonate kinase; 100.0 2.1E-34 7.2E-39 282.8 25.9 238 12-355 126-381 (395)
8 3gon_A Phosphomevalonate kinas 100.0 4.1E-32 1.4E-36 259.5 21.5 212 11-327 83-320 (335)
9 2hfs_A Mevalonate kinase, puta 100.0 8.5E-31 2.9E-35 250.9 28.7 233 13-353 96-332 (332)
10 4hac_A Mevalonate kinase; GHMP 100.0 1.7E-30 5.7E-35 248.5 29.1 224 12-353 95-320 (321)
11 2pg9_A Phosphomevalonate kinas 100.0 2.3E-31 7.9E-36 256.1 21.6 210 11-319 85-318 (337)
12 3k17_A LIN0012 protein; protei 100.0 1.6E-30 5.6E-35 252.7 26.7 208 12-319 96-339 (365)
13 2x7i_A Mevalonate kinase; tran 100.0 1.8E-30 6.3E-35 246.1 23.6 216 8-323 80-297 (308)
14 2oi2_A Mevalonate kinase; enzy 100.0 3.4E-29 1.2E-33 235.2 23.9 210 12-323 72-283 (292)
15 1kkh_A Mevalonate kinase; mixe 100.0 4.9E-28 1.7E-32 230.3 24.5 201 12-320 97-304 (317)
16 1h72_C HK, homoserine kinase; 100.0 7.6E-28 2.6E-32 226.7 22.0 219 13-354 75-296 (296)
17 3hul_A HSK, HK, homoserine kin 99.9 2.7E-24 9.2E-29 203.4 23.1 218 11-355 68-290 (298)
18 3pyf_A 4-diphosphocytidyl-2-C- 99.9 2.2E-23 7.7E-28 197.8 21.0 213 13-355 87-301 (306)
19 2gs8_A Mevalonate pyrophosphat 99.9 2E-22 6.7E-27 191.9 22.7 215 13-353 91-317 (317)
20 3qt5_A Mevalonate diphosphate 99.9 2.5E-21 8.5E-26 185.7 22.0 222 13-355 93-332 (332)
21 1uek_A 4-(cytidine 5'-diphosph 99.8 2E-20 6.7E-25 174.6 13.5 89 13-117 75-163 (275)
22 2v8p_A 4-diphosphocytidyl-2-C- 99.8 3.2E-20 1.1E-24 172.9 10.7 92 13-116 80-171 (271)
23 1fi4_A Mevalonate 5-diphosphat 99.8 1.5E-17 5E-22 164.0 24.0 207 12-324 121-348 (416)
24 3lto_A Mevalonate diphosphate 99.7 1.5E-16 5.3E-21 151.1 22.5 202 12-324 90-309 (323)
25 2ww4_A 4-diphosphocytidyl-2C-m 99.7 2.9E-18 1E-22 160.7 10.0 93 13-118 88-180 (283)
26 2hke_A Diphosphomevalonate dec 99.7 3.9E-16 1.4E-20 152.1 25.3 204 12-324 95-319 (380)
27 3f0n_A Mevalonate pyrophosphat 99.6 1.2E-14 4E-19 141.5 19.0 204 13-325 122-346 (414)
28 3m05_A Uncharacterized protein 79.9 3 0.0001 32.8 5.4 53 275-327 16-73 (114)
29 2eg2_A Nitrogen regulatory pro 46.9 63 0.0022 24.6 7.0 52 274-325 10-83 (112)
30 1vfj_A Nitrogen regulatory pro 45.6 54 0.0019 25.1 6.5 52 274-325 10-83 (116)
31 3bzq_A Nitrogen regulatory pro 40.3 97 0.0033 23.5 7.2 52 274-325 12-85 (114)
32 2j9c_A GLNK1, hypothetical nit 40.0 63 0.0021 25.0 6.1 52 274-325 12-85 (119)
33 2gw8_A PII signal transduction 36.3 1E+02 0.0035 23.5 6.7 52 274-325 12-85 (114)
34 1hwu_A PII protein; herbaspiri 36.3 1.1E+02 0.0037 23.1 6.9 52 274-325 10-83 (112)
35 2o66_A PII protein; regulation 35.2 95 0.0032 24.7 6.5 52 274-325 22-96 (135)
36 1o51_A Hypothetical protein TM 33.5 47 0.0016 25.8 4.2 49 274-322 29-97 (114)
37 2ns1_B Nitrogen regulatory pro 33.0 1.4E+02 0.0047 22.8 7.0 52 274-325 14-87 (116)
38 3t9z_A GLNK3, nitrogen regulat 29.5 1.5E+02 0.005 23.0 6.6 50 275-324 11-82 (118)
39 3ncq_A Nitrogen regulatory pro 28.3 1.5E+02 0.0051 23.0 6.4 52 274-325 10-83 (119)
40 2cz4_A Hypothetical protein TT 24.6 99 0.0034 24.0 4.8 53 273-325 33-99 (119)
No 1
>3v2u_C Protein GAL3; rossmann fold, GHMP superfamily, transcription regulation, transcription; HET: GLA ATP; 2.10A {Saccharomyces cerevisiae} PDB: 3v5r_A 2aj4_A*
Probab=100.00 E-value=1.8e-58 Score=464.95 Aligned_cols=339 Identities=31% Similarity=0.500 Sum_probs=281.8
Q ss_pred cCCcEEEEEEecCCCCCCCChHHHHHHHHHHHHHHHh---CCCCCHHHHHHHHHHhhhhhCCCCCchhHHHHHhhcCCeE
Q 018397 11 KFQLFNHINSLFFNLGSGLSSSTAFVCSSTVALMAAF---GVEVPKKEIAQLTCECEQFIGTQSGGMDQAISIMAKSGFA 87 (356)
Q Consensus 11 ~~~g~~i~i~s~IP~~~GLGSSaAl~va~~~al~~l~---~~~ls~~el~~la~~~E~~~g~~~G~~D~~~~~~Gg~~~~ 87 (356)
..+||++.|+|+||.|+|| |||++||++.|++.++ +.++++.+++++|+++|+++|.+||+|||+++++|+.+++
T Consensus 144 ~~~G~~i~i~s~vP~gsGL--SAA~~va~~~Al~~~~~g~~~~l~~~~la~la~~aE~~vG~~~G~mDQ~as~~G~~g~~ 221 (520)
T 3v2u_C 144 PLVGAQIFCQSDIPTGGGL--SSAFTCAAALATIRANMGKNFDISKKDLTRITAVAEHYVGVNNGGMDQATSVYGEEDHA 221 (520)
T ss_dssp CCCCEEEEEEECCCTTSSH--HHHHHHHHHHHHHHHHHCTTCCCBHHHHHHHHTTGGGGGTCCCCSHHHHHHHHCBTTBE
T ss_pred CCCceEEEEecCCCCCCCH--HHHHHHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHhCCCCchhhHHHHHhCCCCeE
Confidence 3479999999999999999 9999999999999998 7789999999999999998999999999999999999999
Q ss_pred EEEecCC-CeeEEeecCC----CcEEEEEecCcchhhhhhcccchhhHHHHHHHHHHHHHHHhCCCch----hhhhhhcc
Q 018397 88 ELIDFNP-IRTTDVQLPA----GGTFVVAHSLAESLKAITAASNYNNRVVECRLTAIVLAIKLGMKPQ----EAISKVKT 158 (356)
Q Consensus 88 ~~~d~~~-~~~~~~~~p~----~~~~ll~~s~~~~~~~~~~~~~~~~r~~e~~~a~~~l~~~~~~~~~----~~~~~~~~ 158 (356)
+++||++ ++++++++|+ ++.|+|++|++.++++.+++++||.|++||+.|+++|++++++... +......+
T Consensus 222 l~id~~~~l~~~~v~~p~~~~~~~~~vI~ns~v~~~k~~la~s~YN~Rr~eCe~Aa~~L~~~~g~~~~~~~~~~~~~~~s 301 (520)
T 3v2u_C 222 LYVEFRPKLKATPFKFPQLKNHEISFVIANTLVKSNKFETAPTNYNLRVIEVTVAANALATRYSVALPSHKDNSNSERGN 301 (520)
T ss_dssp EEEECSSSCEEEEECCCCCSSCEEEEEEEECCCCCCHHHHTTTTHHHHHHHHHHHHHHHHHHTTBCCCCCCSCSSCTTCC
T ss_pred EEEEcCCCceeEEeeCCCccCCCeEEEEEECCCcccccccccchhhHHHHHHHHHHHHHHHhhCCccccccccccccccc
Confidence 9999999 9999999987 7999999999988899999999999999999999999999876421 00011237
Q ss_pred chhhhhhhhh-hhccCCCC------------CCcccc-------cCCCCHHHHHHHhhhhhhhhhhcCCChhhHHhhhhh
Q 018397 159 LSDVEGLCVA-FACKNGSS------------DPVFAV-------KEPYTALDIEKITEEKLTSIFANSSSSLDVLNAAKQ 218 (356)
Q Consensus 159 Lr~v~~~~~~-~~g~~~~~------------~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (356)
||++.+.+.. +.+....+ +|.+++ +++|+++++.+.++.+.+++.+.++..+++ +.+.
T Consensus 302 LRdv~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~l~~~~~~yt~~e~~~~l~~~~~~l~~~~l~~~~~--~~~~ 379 (520)
T 3v2u_C 302 LRDFMDAYYARYENQAQPWNGDIGTGIERLLKMLQLVEESFSRKKSGFTVHEASTALNCSREEFTRDYLTTFPV--RFQV 379 (520)
T ss_dssp HHHHHHHHHHHHCTTSCCCSSCHHHHHHHHHHHHHHHHHHHTTCTTCBCHHHHHHHTTSCHHHHHHHHTSSSCE--EESC
T ss_pred HHHHhHhhhhhccccccccccchhhHHHHHHHHHHHHHHHhhhccccccHHHHHHhhcCChhhhhhhhcccccc--cccc
Confidence 8887654321 11111111 111111 136888888887775444554444554443 4455
Q ss_pred HHHHHHHhhHHhHHHHHHHHHHHHhcCC--CchHHHHHHHHHHHHHHHHhhhhcCCCChHHHHHHHHHHhCCCceeEEec
Q 018397 219 YKLHQRAAHVYSEAKRVHAFKDTVSSNL--SEEDKLKKLGDLMNDSHHSCSVLYECSCPELEELVNVCRNNGALGARLTG 296 (356)
Q Consensus 219 ~~~~~r~~~~i~E~~rv~~~~~al~~~~--~~~~~~~~lg~lm~~sh~~lr~~~~vs~peld~lv~~a~~~Ga~GaklsG 296 (356)
+.+++|++|+++|+.|+.+++++|.+++ +.++|++.||++|+++|.+||++|+||||++|.|+++|++.|++|+||||
T Consensus 380 ~~l~~RA~HVv~E~~Rv~~~~~al~~~~~~~~~~d~~~lg~lm~~sH~slr~~~~vS~peld~lv~~a~~~Ga~GarlTG 459 (520)
T 3v2u_C 380 LKLYQRAKHVYSESLRVLKALKMMTSATFHTDEDFFTDFGRLMNESQASCDKLYECSCIETNQICSIALANGSFGSRLTG 459 (520)
T ss_dssp BCHHHHHHHHHHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHHHHHHHHHTSCCCCHHHHHHHHHHHHTTCSEEEECS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCcccchhHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHhCCCCEEEEec
Confidence 6789999999999999999999999863 22347999999999999999999999999999999999999999999999
Q ss_pred cCCcceEEEEe---cCCcHHHHHHHHHHHHHhcccCCCcccCCCCcceEEEeecCCceeecc
Q 018397 297 AGWGGCVVALV---KESIDSQFILNLKEQFYQSRIDRGVINNNDLGLYVFASKPSSGAAKFK 355 (356)
Q Consensus 297 aG~GG~vi~l~---~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~Ga~v~~ 355 (356)
||||||+|+|+ +++.++++++.|++.|+++.+ |.++++++++.+|+++|+.||+|+.
T Consensus 460 aG~GGc~iaLv~~~~~~~~~~~~~~l~~~y~~~~~--~~~~~~~~~~~~~~~~p~~GA~i~~ 519 (520)
T 3v2u_C 460 AGWGGCTIHLVPSGANGNVEQVRKALIEKFYNVRY--PDLTDEELKDAIIVSKPALGTCLYE 519 (520)
T ss_dssp SCSSSEEEEEEEESTTCSHHHHHHHHHHHTHHHHC--TTCCHHHHHHHEEECCCCCCSEEEE
T ss_pred CCCCceEEEEEcCCCHHHHHHHHHHHHHHHHhccC--CccccccCCCeEEEecCCCceEEee
Confidence 99999999999 788999999999999998876 5455566788999999999999974
No 2
>2a2c_A N-acetylgalactosamine kinase; galactokinase, , transferase; HET: NG1 ADP; 1.65A {Homo sapiens} PDB: 2a2d_A*
Probab=100.00 E-value=1e-49 Score=400.91 Aligned_cols=325 Identities=40% Similarity=0.638 Sum_probs=258.5
Q ss_pred CCcEEEEEEecCCCCCCCChHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhhhhhCCCCCchhHHHHHhhcCCeEEEEe
Q 018397 12 FQLFNHINSLFFNLGSGLSSSTAFVCSSTVALMAAFGVEVPKKEIAQLTCECEQFIGTQSGGMDQAISIMAKSGFAELID 91 (356)
Q Consensus 12 ~~g~~i~i~s~IP~~~GLGSSaAl~va~~~al~~l~~~~ls~~el~~la~~~E~~~g~~~G~~D~~~~~~Gg~~~~~~~d 91 (356)
.+|+++.|+|+||+++|||||||++||++.+++.+++.++++++++++|..+|++.|.++|+|||+++++|+.+.+++++
T Consensus 147 ~~g~~i~i~s~IP~g~GLgSSAA~~va~~~al~~~~~~~ls~~~l~~la~~~E~~~g~~~g~~D~~a~~~G~~g~~~~i~ 226 (478)
T 2a2c_A 147 LTGMNCLVDGNIPPSSGLSSSSALVCCAGLVTLTVLGRNLSKVELAEICAKSERYIGTEGGGMDQSISFLAEEGTAKLIE 226 (478)
T ss_dssp CCCEEEEEEECSCTTSSSCHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHGGGTCCCCSHHHHHHHHCBTTBEEEEE
T ss_pred CCceEEEEECCCCCCCCchHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhhcCCCCccHHHHHHHhccCCcEEEEE
Confidence 56999999999999999999999999999999999999999999999999999988999999999999999777799999
Q ss_pred cCCCeeEEeecCCCcEEEEEecCcchhhhhhcccchhhHHHHHHHHHHHHHHHhCCCchhhhhhhccchhhhhhhhhhhc
Q 018397 92 FNPIRTTDVQLPAGGTFVVAHSLAESLKAITAASNYNNRVVECRLTAIVLAIKLGMKPQEAISKVKTLSDVEGLCVAFAC 171 (356)
Q Consensus 92 ~~~~~~~~~~~p~~~~~ll~~s~~~~~~~~~~~~~~~~r~~e~~~a~~~l~~~~~~~~~~~~~~~~~Lr~v~~~~~~~~g 171 (356)
+++....++++|+++.|+|++|+++++|..+ ..||.|+.||+.|+++|++..++.+. .++.|+++++.+-
T Consensus 227 f~~~~~~~~~~~~~~~~vi~~s~~~~~t~~t--~~yn~r~~e~~~A~~~L~~~~~~~~~----~~~~l~d~~~~~~---- 296 (478)
T 2a2c_A 227 FSPLRATDVKLPSGAVFVIANSCVEMNKAAT--SHFNIRVMECRLAAKLLAKYKSLQWD----KVLRLEEVQAKLG---- 296 (478)
T ss_dssp TTTTEEEEECCCTTEEEEEEECCCCCCGGGS--SHHHHHHHHHHHHHHHHHHHTTCCTT----TCCCHHHHHHHHT----
T ss_pred cCCCceEEecCCCCcEEEEEeCCCccccccc--chhHHHHHHHHHHHHHHHhhhccccc----ccchHHhhhhhhc----
Confidence 9998899999998999999999998765444 68999999999999999999876542 3567887743210
Q ss_pred cCCCCCCccccc-----CCCCHHHHHHHhhhhhhhhhhcCCChhhHHhhhhhHHHHHHHhhHHhHHHHHHHHHHHHhcCC
Q 018397 172 KNGSSDPVFAVK-----EPYTALDIEKITEEKLTSIFANSSSSLDVLNAAKQYKLHQRAAHVYSEAKRVHAFKDTVSSNL 246 (356)
Q Consensus 172 ~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~i~E~~rv~~~~~al~~~~ 246 (356)
....+++..+. ..++.+++.+.++...+++.+.+++..++ ..+.+.+++|+.|++.|+.|+.+++++|.+.
T Consensus 297 -~~~~~~v~~v~~~~~~~~~~~~~i~~~l~~~~~~~~~~~l~~~~~--~~~~~~~~~ra~h~~~e~~rv~~~~~aL~~~- 372 (478)
T 2a2c_A 297 -ISLEEMLLVTEDALHPEPYNPEEICRCLGISLEELRTQILSPNTQ--DVLIFKLYQRAKHVYSEAARVLQFKKICEEA- 372 (478)
T ss_dssp -CCHHHHHHHHHHHSCSSCBCHHHHHHHHTCCHHHHHHHTSCGGGT--TCCCBCHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred -ccHHHHHHHHHHhcccccccHHHHHHHhCccHHHHHhhccccccc--cchhHHHHHHHHHHHHHHHHHHHHHHHHHhc-
Confidence 00001111111 22444555555544333333333332221 2233467889999999999999999999871
Q ss_pred CchHHHHHHHHHHHHHHHHhhhhcCCCChHHHHHHHHHHhCCCceeEEeccCCcceEEEEecCCcHHHHHHHHHHHHHhc
Q 018397 247 SEEDKLKKLGDLMNDSHHSCSVLYECSCPELEELVNVCRNNGALGARLTGAGWGGCVVALVKESIDSQFILNLKEQFYQS 326 (356)
Q Consensus 247 ~~~~~~~~lg~lm~~sh~~lr~~~~vs~peld~lv~~a~~~Ga~GaklsGaG~GG~vi~l~~~~~~~~~~~~l~~~~~~~ 326 (356)
.++|++.||++|+++|.++|++|++|||++|++++.+++.|++|+||||||||||+++|++++.+++++++|++.|+++
T Consensus 373 -~~~d~~~lg~lm~~sh~slr~l~~vs~peld~l~~~a~~~Ga~GarltGAG~GG~viaLv~~~~~~~~~~~l~~~y~~~ 451 (478)
T 2a2c_A 373 -PENMVQLLGELMNQSHMSCRDMYECSCPELDQLVDICRKFGAQGSRLTGAGWGGCTVSMVPADKLPSFLANVHKAYYQR 451 (478)
T ss_dssp -CTTHHHHHHHHHHHHHHHHHHTSCCCCHHHHHHHHHHHHTTCSEEEECTTCSSSEEEEEEEGGGHHHHHHHHHHHHHC-
T ss_pred -cccHHHHHHHHHHHHHHHHHhcccCCCHHHHHHHHHHHhCCCcEEEeccCCCccEEEEEEcHHHHHHHHHHHHHHHHHh
Confidence 1247999999999999999999999999999999999999999999999999999999999888999999999999876
Q ss_pred ccCCCcccCCCCcceEEEeecCCceeecc
Q 018397 327 RIDRGVINNNDLGLYVFASKPSSGAAKFK 355 (356)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~~~p~~Ga~v~~ 355 (356)
.+....+ ..+.+|+++|++||+++.
T Consensus 452 ~~~~~~~----~~~~~~~~~p~~Ga~~~~ 476 (478)
T 2a2c_A 452 SDGSLAP----EKQSLFATKPGGGALVLL 476 (478)
T ss_dssp ------------CCSEEEECCBCCCEEEE
T ss_pred cCccccC----CCCcEEEEcCCCCeEeec
Confidence 5200001 134789999999999874
No 3
>1pie_A Galactokinase; galactose, galactosemia, transferase; HET: GLA; 2.10A {Lactococcus lactis} SCOP: d.14.1.5 d.58.26.7
Probab=100.00 E-value=6.1e-44 Score=353.38 Aligned_cols=275 Identities=27% Similarity=0.371 Sum_probs=236.2
Q ss_pred CcEEEEEEecCCCCCCCChHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhhh-hhCCCCCchhHHHHHhhcCCeEEEEe
Q 018397 13 QLFNHINSLFFNLGSGLSSSTAFVCSSTVALMAAFGVEVPKKEIAQLTCECEQ-FIGTQSGGMDQAISIMAKSGFAELID 91 (356)
Q Consensus 13 ~g~~i~i~s~IP~~~GLGSSaAl~va~~~al~~l~~~~ls~~el~~la~~~E~-~~g~~~G~~D~~~~~~Gg~~~~~~~d 91 (356)
+|+++.|+|+||.++|||||||+++|++.|++++++.++++++++++|.++|+ ++|.++|+||++++++||.+.+++++
T Consensus 140 ~g~~i~i~s~IP~gaGLGSSaA~~vA~~~al~~l~g~~ls~~el~~la~~~E~~~~G~~~G~~D~~~~~~Gg~~~~~~~d 219 (419)
T 1pie_A 140 KGFELLIKGEIPTASGLSSSASLELLVGVVLDDLFNLNVPRLELVQLGQKTENDYIGVNSGILDQFAIGFGEVKKAIELD 219 (419)
T ss_dssp SCEEEEEEECSCTTSSSCHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTTCCCCCSHHHHHHHHCBTTEEEEEE
T ss_pred CCEEEEEECCCCCCCChhHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhcCCCccchhHHHHHhccCCeEEEee
Confidence 68999999999999999999999999999999999999999999999999997 78999999999999999988888899
Q ss_pred cCCCeeEEeecC-CCcEEEEEecCcchhhhhhcccchhhHHHHHHHHHHHHHHHhCCCchhhhhhhccchhhhhhhhhhh
Q 018397 92 FNPIRTTDVQLP-AGGTFVVAHSLAESLKAITAASNYNNRVVECRLTAIVLAIKLGMKPQEAISKVKTLSDVEGLCVAFA 170 (356)
Q Consensus 92 ~~~~~~~~~~~p-~~~~~ll~~s~~~~~~~~~~~~~~~~r~~e~~~a~~~l~~~~~~~~~~~~~~~~~Lr~v~~~~~~~~ 170 (356)
+++..++++++| +++.|++++|+++. .+..+.||.|+.||+.++++|++..+ ++.|+++.
T Consensus 220 ~~~~~~~~l~~~~~~~~~vl~~~~~~~---~t~~~~y~~r~~~~~~a~~~l~~~~~---------v~~l~~~~------- 280 (419)
T 1pie_A 220 CNTLKYEMVPVELRDYDIVIMNTNKPR---ALTESKYNERFAETREALKRMQTRLD---------IQSLGELS------- 280 (419)
T ss_dssp TTTCCEEEEECCCTTEEEEEEECCCCC---CTTCHHHHHHHHHHHHHHHHHHHHCC---------CSSGGGCC-------
T ss_pred cCCCceEEeecCCCCcEEEEEECCCcc---ccccchHHHHHHHHHHHHHHHhhccc---------cCchhhCC-------
Confidence 988888999987 68999999999854 45557899999999999999986422 23444321
Q ss_pred ccCCCCCCcccccCCCCHHHHHHHhhhhhhhhhhcCCChhhHHhhhhhHHHHHHHhhHHhHHHHHHHHHHHHhcCCCchH
Q 018397 171 CKNGSSDPVFAVKEPYTALDIEKITEEKLTSIFANSSSSLDVLNAAKQYKLHQRAAHVYSEAKRVHAFKDTVSSNLSEED 250 (356)
Q Consensus 171 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~i~E~~rv~~~~~al~~~~~~~~ 250 (356)
.+++.++... ++ .+..++|+.|++.|+.|+.+++++|.++|
T Consensus 281 -----------------~~~~~~~~~~-l~-----------------~~~~~~~~~~~v~e~~r~~~~~~al~~~d---- 321 (419)
T 1pie_A 281 -----------------NEEFDANTDL-IG-----------------DETLIKRARHAVYENNRTKIAQKAFVAGN---- 321 (419)
T ss_dssp -----------------HHHHHHTGGG-TC-----------------CHHHHHHHHHHHHHHHHHHHHHHHHHHTC----
T ss_pred -----------------HHHHHHHHhh-cC-----------------cHHHHHHHHHHHHHHHHHHHHHHHHHcCC----
Confidence 1223222110 00 11357789999999999999999999874
Q ss_pred HHHHHHHHHHHHHHHhhhhcCCCChHHHHHHHHHHhC-CCceeEEeccCCcceEEEEecCCcHHHHHHHHHHHHHhcccC
Q 018397 251 KLKKLGDLMNDSHHSCSVLYECSCPELEELVNVCRNN-GALGARLTGAGWGGCVVALVKESIDSQFILNLKEQFYQSRID 329 (356)
Q Consensus 251 ~~~~lg~lm~~sh~~lr~~~~vs~peld~lv~~a~~~-Ga~GaklsGaG~GG~vi~l~~~~~~~~~~~~l~~~~~~~~~~ 329 (356)
++.||++|+++|.++++.|++++|++|.+++.+++. |++|+||||||||||+++|++++.++++.++|++.|+++.+
T Consensus 322 -~~~lg~lm~~~~~~l~~~~~~~~p~l~~l~~~a~~~~Ga~ga~lsGaG~Gg~v~al~~~~~a~~~~~~l~~~~~~~~g- 399 (419)
T 1pie_A 322 -LTKFGELLNASHASLKDDYEVTGLELDTLAETAQKQAGVLGARMTGAGFGGCAIALVAHDNVSAFRKAVGQVYEEVVG- 399 (419)
T ss_dssp -HHHHHHHHHHHHHHHHHTSCCCCHHHHHHHHHHHHSTTEEEEEECSSCSSSEEEEEEEGGGHHHHHHHHHHHHHHHHS-
T ss_pred -HHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhcCCCceeeEecCCCCeEEEEEEchhhHHHHHHHHHHHHHHhcC-
Confidence 999999999999999998999999999999999997 99999999999999999999988899999999998876543
Q ss_pred CCcccCCCCcceEEEeecCCceeecc
Q 018397 330 RGVINNNDLGLYVFASKPSSGAAKFK 355 (356)
Q Consensus 330 ~~~~~~~~~~~~~~~~~p~~Ga~v~~ 355 (356)
.++.+|+++|++||++++
T Consensus 400 --------~~~~~~~~~~~~Ga~v~~ 417 (419)
T 1pie_A 400 --------YPASFYVAQIGSGSTKLD 417 (419)
T ss_dssp --------SCCEEEECCBCCCSBCC-
T ss_pred --------CCCeEEEEcCCCCeeecc
Confidence 467899999999999875
No 4
>1wuu_A Galactokinase; galactosemia, GHMP superfamily, transferase; HET: GLA ANP; 2.50A {Homo sapiens} SCOP: d.14.1.5 d.58.26.7
Probab=100.00 E-value=1.8e-42 Score=340.81 Aligned_cols=268 Identities=29% Similarity=0.407 Sum_probs=227.5
Q ss_pred CCcEEEEEEecCCCCCCCChHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhhh-hhCCCCCchhHHHHHhhcCCeEEEE
Q 018397 12 FQLFNHINSLFFNLGSGLSSSTAFVCSSTVALMAAFGVEVPKKEIAQLTCECEQ-FIGTQSGGMDQAISIMAKSGFAELI 90 (356)
Q Consensus 12 ~~g~~i~i~s~IP~~~GLGSSaAl~va~~~al~~l~~~~ls~~el~~la~~~E~-~~g~~~G~~D~~~~~~Gg~~~~~~~ 90 (356)
.+|+++.|+|+||.++|||||||+++|++.|++++++.++++++++++|.++|+ +.|.++|+|||+++++||.+.++++
T Consensus 129 ~~g~~i~i~s~IP~gaGLGSSaA~~vA~~~al~~l~~~~l~~~~l~~la~~~E~~~~G~~~G~~D~~~~~~Gg~~~~~~~ 208 (399)
T 1wuu_A 129 LPGFSAVVVSSVPLGGGLSSSASLEVATYTFLQQLCPDSGTIAARAQVCQQAEHSFAGMPCGIMDQFISLMGQKGHALLI 208 (399)
T ss_dssp CCEEEEEEEECSCTTSSSCHHHHHHHHHHHHHHHHSCCCSCHHHHHHHHHHHHHHHTCCCCCSHHHHHHHHCCTTEEEEE
T ss_pred CCCeEEEEECCCCCCCCccHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhcCCCCccHHHHHHHhccCCeEEEE
Confidence 369999999999999999999999999999999999999999999999999998 7899999999999999999888889
Q ss_pred ecCCCeeEEeecCC-CcEEEEEecCcchhhhhhcccchhhHHHHHHHHHHHHHHHhCCCchhhhhhhccchhhhhhhhhh
Q 018397 91 DFNPIRTTDVQLPA-GGTFVVAHSLAESLKAITAASNYNNRVVECRLTAIVLAIKLGMKPQEAISKVKTLSDVEGLCVAF 169 (356)
Q Consensus 91 d~~~~~~~~~~~p~-~~~~ll~~s~~~~~~~~~~~~~~~~r~~e~~~a~~~l~~~~~~~~~~~~~~~~~Lr~v~~~~~~~ 169 (356)
++++..++++++|. ++.+++++|+.+. .+....||.|+.||+.++++|+.. .++++
T Consensus 209 ~~~~~~~~~~~~~~~~~~~vl~~~~~~~---~t~~~~y~~r~~~~~~a~~~l~~~-------------~l~~~------- 265 (399)
T 1wuu_A 209 DCRSLETSLVPLSDPKLAVLITNSNVRH---SLASSEYPVRRRQCEEVARALGKE-------------SLREV------- 265 (399)
T ss_dssp ETTTCCEEEEECCCSSEEEEEEEEEEEC-----CTTTHHHHHHHHHHHHHHTTCS-------------STTSC-------
T ss_pred ecCCCceEEecCCCCCeEEEEEECCCcc---ccccccHHHHHHHHHHHHHHhChh-------------hhhcC-------
Confidence 98888888888874 8999999999854 455568999999999988777431 23321
Q ss_pred hccCCCCCCcccccCCCCHHHHHHHhhhhhhhhhhcCCChhhHHhhhhhHHHHHHHhhHHhHHHHHHHHHHHHhcCCCch
Q 018397 170 ACKNGSSDPVFAVKEPYTALDIEKITEEKLTSIFANSSSSLDVLNAAKQYKLHQRAAHVYSEAKRVHAFKDTVSSNLSEE 249 (356)
Q Consensus 170 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~i~E~~rv~~~~~al~~~~~~~ 249 (356)
+.+++.+++.. + ....++|+.|.+.|+.|+.+++++|.++|
T Consensus 266 -----------------~~~~~~~~~~~-l------------------~~~~~~r~~~~~~e~~r~~~~~~al~~~d--- 306 (399)
T 1wuu_A 266 -----------------QLEELEAARDL-V------------------SKEGFRRARHVVGEIRRTAQAAAALRRGD--- 306 (399)
T ss_dssp -----------------CHHHHTTGGGG-S------------------CHHHHHHHHHHHHHHHHHHHHHHHHHTTC---
T ss_pred -----------------CHHHHHHHHhh-c------------------CHHHHHHHHHHHhhHHHHHHHHHHHHcCC---
Confidence 11122111110 0 01357889999999999999999999875
Q ss_pred HHHHHHHHHHHHHHHHhhhhcCCCChHHHHHHHHHHh-CCCceeEEeccCCcceEEEEecCCcHHHHHHHHHHHHHhccc
Q 018397 250 DKLKKLGDLMNDSHHSCSVLYECSCPELEELVNVCRN-NGALGARLTGAGWGGCVVALVKESIDSQFILNLKEQFYQSRI 328 (356)
Q Consensus 250 ~~~~~lg~lm~~sh~~lr~~~~vs~peld~lv~~a~~-~Ga~GaklsGaG~GG~vi~l~~~~~~~~~~~~l~~~~~~~~~ 328 (356)
++.||++|+++|.++++.+++++|++|++++.+++ .|++|+||||||||||+++|++++.++++.++|++.| +
T Consensus 307 --~~~lg~~m~~~h~~l~~~~~~~~p~l~~l~~~a~~~~Ga~ga~~sGaG~Gg~v~~l~~~~~~~~~~~~l~~~~---~- 380 (399)
T 1wuu_A 307 --YRAFGRLMVESHRSLRDDYEVSCPELDQLVEAALAVPGVYGSRMTGGGFGGCTVTLLEASAAPHAMRHIQEHY---G- 380 (399)
T ss_dssp --HHHHHHHHHHHHHHHHHTSCCCCHHHHHHHHHHHTSTTEEEEEECSSCSEEEEEEEEEGGGHHHHHHHHHHHC---S-
T ss_pred --HHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHhcCCceEEeeecCCCccEEEEEEccchHHHHHHHHHHHh---C-
Confidence 99999999999999999889999999999999999 7999999999999999999999888899999998777 1
Q ss_pred CCCcccCCCCcceEEEeecCCceeeccC
Q 018397 329 DRGVINNNDLGLYVFASKPSSGAAKFKF 356 (356)
Q Consensus 329 ~~~~~~~~~~~~~~~~~~p~~Ga~v~~~ 356 (356)
..+.+|++.|++||+++.|
T Consensus 381 ---------~~~~~~~~~~~~Ga~~~~~ 399 (399)
T 1wuu_A 381 ---------GTATFYLSQAADGAKVLCL 399 (399)
T ss_dssp ---------SCCEEEEECCCCCSEECCC
T ss_pred ---------CCCcEEEEcCCCCeeeccC
Confidence 2568999999999998753
No 5
>2cz9_A Probable galactokinase; structural genomics, NPPSFA, national project protein structural and functional analyses; 1.50A {Pyrococcus horikoshii} PDB: 2dei_A* 2dej_A* 1s4e_A*
Probab=100.00 E-value=2.7e-41 Score=325.94 Aligned_cols=264 Identities=23% Similarity=0.306 Sum_probs=225.1
Q ss_pred CcEEEEEEecCCCCCCCChHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhhh-hhCCCCCchhHHHHHhhcCCeEEEEe
Q 018397 13 QLFNHINSLFFNLGSGLSSSTAFVCSSTVALMAAFGVEVPKKEIAQLTCECEQ-FIGTQSGGMDQAISIMAKSGFAELID 91 (356)
Q Consensus 13 ~g~~i~i~s~IP~~~GLGSSaAl~va~~~al~~l~~~~ls~~el~~la~~~E~-~~g~~~G~~D~~~~~~Gg~~~~~~~d 91 (356)
+|+++.++|+||.++|||||||+++|++.|++++++.++++++++++|.++|. +.|.++|++|++++.+|+.++++++|
T Consensus 86 ~g~~i~i~s~IP~g~GLGSSaA~~vA~~~al~~l~~~~l~~~el~~la~~~e~~~~g~~~gi~d~~~~~~g~~~~~~~~d 165 (350)
T 2cz9_A 86 GGIKGRVSGNLPLGAGLSSSASFEVGILETLDKLYNLKLDSLSKVLLAKKAENEFVGVPCGILDQFAVVFGREGNVIFLD 165 (350)
T ss_dssp CEEEEEEECSCCTTSSSCHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTTCCCCCSHHHHHHHHCCTTEEEEEE
T ss_pred CCeEEEEECCCCCCCCcchHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhcCCCccchhHHHHHhcCCCeEEEEe
Confidence 68999999999999999999999999999999999999999999999999996 78999999999999999988899999
Q ss_pred cCCCeeEEeecCCCcEEEEEecCcchhhhhhcccchhhHHHHHHHHHHHHHHHhCCCchhhhhhhccchhhhhhhhhhhc
Q 018397 92 FNPIRTTDVQLPAGGTFVVAHSLAESLKAITAASNYNNRVVECRLTAIVLAIKLGMKPQEAISKVKTLSDVEGLCVAFAC 171 (356)
Q Consensus 92 ~~~~~~~~~~~p~~~~~ll~~s~~~~~~~~~~~~~~~~r~~e~~~a~~~l~~~~~~~~~~~~~~~~~Lr~v~~~~~~~~g 171 (356)
+++..++++++|+++.+++++|+.+++ +....|+.|+.||+.|+++++. +.||++..
T Consensus 166 ~~~~~~~~l~~~~~~~~vl~~~~~~~~---~~t~~~~~r~~~~~~a~~~~~~-------------~~lr~~~~------- 222 (350)
T 2cz9_A 166 THTLDYEYIPFPKDVSILVFYTGVRRE---LASSEYAERKHIAEESLKILGK-------------GSSKEVRE------- 222 (350)
T ss_dssp TTTCCEEEEECCTTEEEEEEECSCC-------CHHHHHHHHHHHHHHHHHTC-------------SCGGGCCG-------
T ss_pred cCCCcEEEEcCCCCcEEEEEECCCCCc---cccchHHHHHHHHHHHHHHhCh-------------hhhhhCCH-------
Confidence 988888999998899999999998542 3334599999999999877642 24443211
Q ss_pred cCCCCCCcccccCCCCHHHHHHHhhhhhhhhhhcCCChhhHHhhhhhHHHHHHHhhHHhHHHHHHHHHHHHhcCCCchHH
Q 018397 172 KNGSSDPVFAVKEPYTALDIEKITEEKLTSIFANSSSSLDVLNAAKQYKLHQRAAHVYSEAKRVHAFKDTVSSNLSEEDK 251 (356)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~i~E~~rv~~~~~al~~~~~~~~~ 251 (356)
+++ .. ++ ..++++..|.+.|..|+.+++++|.++|
T Consensus 223 -----------------~~~-~~----l~------------------~~~~~~~~~~~~~~~~~~~~~~al~~~d----- 257 (350)
T 2cz9_A 223 -----------------GEL-SK----LP------------------PLHRKFFGYIVRENARVLEVRDALKEGN----- 257 (350)
T ss_dssp -----------------GGG-GG----SC------------------HHHHHHHHHHHHHHHHHHHHHHHHHTTC-----
T ss_pred -----------------HHH-hh----CC------------------HHHHHHHHHHhhHHHHHHHHHHHHHhCC-----
Confidence 010 00 00 0235577788888889999999999875
Q ss_pred HHHHHHHHHHHHHHhhhhcCCCChHHHHHHHHHHhCCCceeEEeccCCcceEEEEecCCcHHHHHHHHHHHHHhcccCCC
Q 018397 252 LKKLGDLMNDSHHSCSVLYECSCPELEELVNVCRNNGALGARLTGAGWGGCVVALVKESIDSQFILNLKEQFYQSRIDRG 331 (356)
Q Consensus 252 ~~~lg~lm~~sh~~lr~~~~vs~peld~lv~~a~~~Ga~GaklsGaG~GG~vi~l~~~~~~~~~~~~l~~~~~~~~~~~~ 331 (356)
++.||++|+++|.++++.|++++|++|++++.+++.|++|+||||||||||+++|++++.++++.++|++.|++.++
T Consensus 258 ~~~lg~~~~~~~~~l~~~~~~~~p~l~~l~~~~~~~Ga~ga~lsGaG~G~~v~~l~~~~~~~~~~~~l~~~~~~~~~--- 334 (350)
T 2cz9_A 258 VEEVGKILTTAHWDLAKNYEVSCKELDFFVERALKLGAYGARLTGAGFGGSAIALVDKEDAETIGEEILREYLKRFP--- 334 (350)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHTTCSEEEECSSCSSSEEEEEEEGGGHHHHHHHHHHHHHHHCC---
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHcCCCEEEEecCCCceEEEEEEchhhHHHHHHHHHHHHHHhhC---
Confidence 99999999999999999889999999999999999999999999999999999999888889999999988876532
Q ss_pred cccCCCCcceEEEeecCCceee
Q 018397 332 VINNNDLGLYVFASKPSSGAAK 353 (356)
Q Consensus 332 ~~~~~~~~~~~~~~~p~~Ga~v 353 (356)
+.+.+|+++|++||++
T Consensus 335 ------~~~~~~~~~~~~Ga~~ 350 (350)
T 2cz9_A 335 ------WKARHFIVEPSDGVGI 350 (350)
T ss_dssp ------SCCEEEEECEECCSBC
T ss_pred ------CCCcEEEecCCCCCCC
Confidence 4678999999999985
No 6
>3k85_A D-glycero-D-manno-heptose 1-phosphate kinase; bacteriodes thetaiotaomicron, protein structure initiative II(PSI II), nysgxrc; 2.28A {Bacteroides thetaiotaomicron}
Probab=100.00 E-value=2.9e-37 Score=299.41 Aligned_cols=218 Identities=17% Similarity=0.229 Sum_probs=160.1
Q ss_pred CCcEEEEEEecCCCCCCCChHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhhh-hhCCCCCchhHHHHHhhcCCeEEEE
Q 018397 12 FQLFNHINSLFFNLGSGLSSSTAFVCSSTVALMAAFGVEVPKKEIAQLTCECEQ-FIGTQSGGMDQAISIMAKSGFAELI 90 (356)
Q Consensus 12 ~~g~~i~i~s~IP~~~GLGSSaAl~va~~~al~~l~~~~ls~~el~~la~~~E~-~~g~~~G~~D~~~~~~Gg~~~~~~~ 90 (356)
.+||++.+.++||.++|||||||+++|++.+++++++.++++++++++|.++|+ ++|.+||.+||+++++||...+.+.
T Consensus 96 ~~g~~i~i~~~iP~g~GLgSSaa~~va~~~al~~~~~~~l~~~~l~~~a~~~E~~~~G~~~G~~D~~a~~~Gg~~~~~~~ 175 (357)
T 3k85_A 96 PKSFKITTYNDAPAGSGLGTSSTMVVCILKAFIEWLSLPLGDYETSRLAYEIERKDLGLSGGKQDQYAAAFGGFNYMEFL 175 (357)
T ss_dssp CCCEEEEEEESSCSSSSSCHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHCSEEEEEEE
T ss_pred CCCEEEEEecCCCCCCCchHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHccCCCcHHHHHHHHhCCceEEEEe
Confidence 469999999999999999999999999999999999999999999999999998 8899999999999999998766566
Q ss_pred ecCCCeeEEeecCCC------cEEEEEecCcchhhhhhcccchhhHHHHHHHHHHHHHHHhCCCchhhhhhhccchhhhh
Q 018397 91 DFNPIRTTDVQLPAG------GTFVVAHSLAESLKAITAASNYNNRVVECRLTAIVLAIKLGMKPQEAISKVKTLSDVEG 164 (356)
Q Consensus 91 d~~~~~~~~~~~p~~------~~~ll~~s~~~~~~~~~~~~~~~~r~~e~~~a~~~l~~~~~~~~~~~~~~~~~Lr~v~~ 164 (356)
++.+..++++++|++ +.++|++|+.++++.. +++... +.+.
T Consensus 176 ~~~~~~~~~l~~~~~~~~~l~~~lvi~~t~~~~~a~~------------------~l~~~~-----------~~~~---- 222 (357)
T 3k85_A 176 QNDLVIVNPLKMKRWIVDELESSMVLYFTGRSRSSAA------------------IINEQK-----------KNTS---- 222 (357)
T ss_dssp TTTEEEEEEECCCHHHHHHHHHTEEEECC---------------------------------------------------
T ss_pred CCCceeEEEEecChhhhhhcCceEEEEECCCcccHHH------------------HHHHHH-----------HHhh----
Confidence 666667788887753 5789999987543211 111100 0000
Q ss_pred hhhhhhccCCCCCCcccccCCCCHHHHHHHhhhhhhhhhhcCCChhhHHhhhhhHHHHHHHhhHHhHHHHHHHHHHHHhc
Q 018397 165 LCVAFACKNGSSDPVFAVKEPYTALDIEKITEEKLTSIFANSSSSLDVLNAAKQYKLHQRAAHVYSEAKRVHAFKDTVSS 244 (356)
Q Consensus 165 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~i~E~~rv~~~~~al~~ 244 (356)
+ .+ ....|+.|.+.| ++.++++||.+
T Consensus 223 -------------------------~--------~~-------------------~~~~~~~~~i~~--~~~~~~~aL~~ 248 (357)
T 3k85_A 223 -------------------------E--------GN-------------------QTAIEAMHKIKQ--SAIDTKLALLK 248 (357)
T ss_dssp -------------------------------------------------------CCTTHHHHHHHH--HHHHHHHHHTT
T ss_pred -------------------------c--------Cc-------------------HHHHHHHHHHHH--HHHHHHHHHHc
Confidence 0 00 012345565654 67788999987
Q ss_pred CCCchHHHHHHHHHHHHHHHHhhhh-cCCCChHHHHHHHHHHhCCCceeEEeccCCcceEEEEecCCcHHHHHHHHHH
Q 018397 245 NLSEEDKLKKLGDLMNDSHHSCSVL-YECSCPELEELVNVCRNNGALGARLTGAGWGGCVVALVKESIDSQFILNLKE 321 (356)
Q Consensus 245 ~~~~~~~~~~lg~lm~~sh~~lr~~-~~vs~peld~lv~~a~~~Ga~GaklsGaG~GG~vi~l~~~~~~~~~~~~l~~ 321 (356)
+| ++.||++|+++|.+++++ |++|+|++|++++.+++.|++|+||||||+|||+++|++++.+++++++|++
T Consensus 249 ~d-----~~~lg~lm~~~~~~l~~~~~~vs~p~ld~l~~~a~~~Ga~GaklsGaG~gG~vial~~~~~~~~~~~~l~~ 321 (357)
T 3k85_A 249 GD-----VGEFARILGEGWENKKKMAGAITNPMIQEAFDVATGAGAMAGKVSGAGGGGFIMFVVEPTRKEEVVRALNN 321 (357)
T ss_dssp TC-----HHHHHHHHHHHHHHTTC-----------CCSCTTTTSCCSEEEECCCC---CEEEECCHHHHHHHHHHHHT
T ss_pred CC-----HHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHhcCCeEeEecccCCCCEEEEEecHHHHHHHHHHHHH
Confidence 74 999999999999999987 8999999999999999999999999999999999999987777777777743
No 7
>1kvk_A MK, mevalonate kinase; RMK, ATP, GHMP, transferase; HET: ATP; 2.40A {Rattus norvegicus} SCOP: d.14.1.5 d.58.26.3 PDB: 2r42_A* 2r3v_A
Probab=100.00 E-value=2.1e-34 Score=282.81 Aligned_cols=238 Identities=18% Similarity=0.222 Sum_probs=187.0
Q ss_pred CCcEEEEEEecCCCCCCCChHHHHHHHHHHHHHHHhCC-----CCC-------H---HHHHHHHHHhhh-hhCCCCCchh
Q 018397 12 FQLFNHINSLFFNLGSGLSSSTAFVCSSTVALMAAFGV-----EVP-------K---KEIAQLTCECEQ-FIGTQSGGMD 75 (356)
Q Consensus 12 ~~g~~i~i~s~IP~~~GLGSSaAl~va~~~al~~l~~~-----~ls-------~---~el~~la~~~E~-~~g~~~G~~D 75 (356)
.+|+++.++++||.++|||||||+++|++.|++++++. +++ + .+++++|..+|+ ++|.++|. |
T Consensus 126 ~~g~~i~i~s~iP~g~GLGSSaA~~va~~~al~~l~~~~~~~~~l~~~~~~~~~~~l~~l~~~A~~~E~~~~G~~sG~-D 204 (395)
T 1kvk_A 126 LPSLDIMVWSELPPGAGLGSSAAYSVCVAAALLTACEEVTNPLKDRGSIGSWPEEDLKSINKWAYEGERVIHGNPSGV-D 204 (395)
T ss_dssp CCCEEEEEEESSCTTSSSCHHHHHHHHHHHHHHHHTTSSCCGGGGCCSEECCCHHHHHHHHHHHHHHHHHHHSSCCSH-H
T ss_pred CCCEEEEEEecCCCCCCccHHHHHHHHHHHHHHHHhCcccccccccccccccchhhHHHHHHHHHHhhheEecCCCCc-c
Confidence 57999999999999999999999999999999999998 788 7 556677999998 78999997 9
Q ss_pred HHHHHhhcCCeEEEEecCCCeeEEeecCCCcEEEEEecCcchhhhhhcccchhhHHHHHHHHHHHHHHHhCCCchhhhhh
Q 018397 76 QAISIMAKSGFAELIDFNPIRTTDVQLPAGGTFVVAHSLAESLKAITAASNYNNRVVECRLTAIVLAIKLGMKPQEAISK 155 (356)
Q Consensus 76 ~~~~~~Gg~~~~~~~d~~~~~~~~~~~p~~~~~ll~~s~~~~~~~~~~~~~~~~r~~e~~~a~~~l~~~~~~~~~~~~~~ 155 (356)
++++++||. +++ ++..++++++|+++.+++++|+.++++....
T Consensus 205 ~~~~~~Gg~---~~~--~~~~~~~l~~~~~~~~vl~~~~~~~~T~~~~-------------------------------- 247 (395)
T 1kvk_A 205 NSVSTWGGA---LRY--QQGKMSSLKRLPALQILLTNTKVPRSTKALV-------------------------------- 247 (395)
T ss_dssp HHHHHHCSE---EEE--SSSCEEECSCCCCEEEEEEECCCCCCHHHHH--------------------------------
T ss_pred hHHhhhcce---EEE--cCCCceeccCCCCcEEEEEECCCCCchHHHH--------------------------------
Confidence 999999983 343 3446778877778999999999866533210
Q ss_pred hccchhhhhhhhhhhccCCCCCCcccccCCCCHHHHHHHhhhhhhhhhhcCCChhhHHhhhhhHHHHHHHhhHHhHHHHH
Q 018397 156 VKTLSDVEGLCVAFACKNGSSDPVFAVKEPYTALDIEKITEEKLTSIFANSSSSLDVLNAAKQYKLHQRAAHVYSEAKRV 235 (356)
Q Consensus 156 ~~~Lr~v~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~i~E~~rv 235 (356)
+.+++... .. ++. -...++++.|++.|..|+
T Consensus 248 -~~~~~~~~-----------------------------~~----~~~---------------~~~~~~~~~~~~~~~~~~ 278 (395)
T 1kvk_A 248 -AGVRSRLI-----------------------------KF----PEI---------------MAPLLTSIDAISLECERV 278 (395)
T ss_dssp -HHHHHHHH-----------------------------HS----HHH---------------HHHHHHHHHHHHHHHHHH
T ss_pred -HHHHHHHH-----------------------------HC----HHH---------------HHHHHHHHHHHHHHHHHH
Confidence 00110000 00 000 002467788888888776
Q ss_pred HHH-HHHHhcCCCchHHHHHHHHHHHHHHHHhhhhcCCCChHHHHHHHHHHhCCCceeEEeccCCcceEEEEecCCcHHH
Q 018397 236 HAF-KDTVSSNLSEEDKLKKLGDLMNDSHHSCSVLYECSCPELEELVNVCRNNGALGARLTGAGWGGCVVALVKESIDSQ 314 (356)
Q Consensus 236 ~~~-~~al~~~~~~~~~~~~lg~lm~~sh~~lr~~~~vs~peld~lv~~a~~~Ga~GaklsGaG~GG~vi~l~~~~~~~~ 314 (356)
... +.++.+ +|++.||++|+++|.++++ |++++|++|++++.+++.|+ |+||||||||||+++|++++..++
T Consensus 279 l~~~~~al~~-----~d~~~lg~lm~~~~~~l~~-~~~~~p~l~~l~~~a~~~Ga-ga~~sGaG~Gg~v~~l~~~~~~~~ 351 (395)
T 1kvk_A 279 LGEMAAAPVP-----EQYLVLEELMDMNQHHLNA-LGVGHASLDQLCQVTAAHGL-HSKLTGAGGGGCGITLLKPGLERA 351 (395)
T ss_dssp HHHHTTCCCH-----HHHHHHHHHHHHHHHHHHH-HTCCCHHHHHHHHHHHHTTC-EEEECSSCSSSEEEEEECTTCCHH
T ss_pred HHhhhccccH-----HHHHHHHHHHHHHHHHHHH-cCCCCHHHHHHHHHHHHcCC-ceeeccCCCCCEEEEEecCCCCHH
Confidence 654 455553 5799999999999999997 89999999999999999999 999999999999999998877888
Q ss_pred HHHHHHHHHHhcccCCCcccCCCCcceEEEee-cCCceeecc
Q 018397 315 FILNLKEQFYQSRIDRGVINNNDLGLYVFASK-PSSGAAKFK 355 (356)
Q Consensus 315 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-p~~Ga~v~~ 355 (356)
+++++.+.|.+.++ .+|+++ ++.|+++..
T Consensus 352 ~~~~~~~~~~~~g~------------~~~~~~~~~~G~~v~~ 381 (395)
T 1kvk_A 352 KVEAAKQALTGCGF------------DCWETSIGAPGVSMHS 381 (395)
T ss_dssp HHHHHHHHHHHTTC------------EEEEEEESCCCSEEEC
T ss_pred HHHHHHHHHHHcCC------------EEEEEecCCCcEEEEe
Confidence 89999888876432 477777 677999864
No 8
>3gon_A Phosphomevalonate kinase; GHMP kinase superfamily, ATP-binding, nucleotide- binding, transferase; HET: PMV ANP; 1.90A {Streptococcus pneumoniae} PDB: 1k47_A
Probab=100.00 E-value=4.1e-32 Score=259.46 Aligned_cols=212 Identities=18% Similarity=0.154 Sum_probs=159.9
Q ss_pred cCCcEEEEEEecCCCC---CCCChHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhhhhhCCCCCchhHHHHHhhcCCeE
Q 018397 11 KFQLFNHINSLFFNLG---SGLSSSTAFVCSSTVALMAAFGVEVPKKEIAQLTCECEQFIGTQSGGMDQAISIMAKSGFA 87 (356)
Q Consensus 11 ~~~g~~i~i~s~IP~~---~GLGSSaAl~va~~~al~~l~~~~ls~~el~~la~~~E~~~g~~~G~~D~~~~~~Gg~~~~ 87 (356)
..+|+++.|+|++|.+ +|||||||++||++.+++.+++.++++++++++|..+|+..+..+|+|||++++|||..
T Consensus 83 ~~~~~~i~I~s~lp~~~~~~GLgSSaa~~va~~~al~~~~~~~~~~~~l~~la~~~E~~~~g~~sg~D~a~a~~Gg~i-- 160 (335)
T 3gon_A 83 NLRPFSLAIYGKMEREGKKFGLGSSGSVVVLVVKALLALYNLSVDQNLLFKLTSAVLLKRGDNGSMGDLACIAAEDLV-- 160 (335)
T ss_dssp CCCCEEEEEECCSEETTEECSSCHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTTCCSCSHHHHHHHHTSCE--
T ss_pred CCCceEEEEEecCCcccCCCCcchHHHHHHHHHHhhhhcccccchHHHHHHHHHHHHHHhcCCCCCCCcceeecCCeE--
Confidence 4579999999999987 59999999999999999999999999999999999999854334445999999999952
Q ss_pred EEEecC----------------------CCeeEEeecCCCcEEEEEecCcchhhhhhcccchhhHHHHHHHHHHHHHHHh
Q 018397 88 ELIDFN----------------------PIRTTDVQLPAGGTFVVAHSLAESLKAITAASNYNNRVVECRLTAIVLAIKL 145 (356)
Q Consensus 88 ~~~d~~----------------------~~~~~~~~~p~~~~~ll~~s~~~~~~~~~~~~~~~~r~~e~~~a~~~l~~~~ 145 (356)
++... .....+++.|.++.+++++++.+.++.... .
T Consensus 161 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~t~~~v------------------~--- 218 (335)
T 3gon_A 161 -LYQSFDRQKVAAWLEEENLATVLERDWGFSISQVKPTLECDFLVGWTKEVAVSSHMV------------------Q--- 218 (335)
T ss_dssp -EEECCCHHHHHHHHHHSCHHHHHHSCCCCEEEECCCCSCCEEEEEECCCCCCHHHHH------------------H---
T ss_pred -EEEeCCccccceeecccchhheecccccceeEEcCCccccceEEeecCChhhHHHHH------------------H---
Confidence 32211 124566677778999999999865432210 0
Q ss_pred CCCchhhhhhhccchhhhhhhhhhhccCCCCCCcccccCCCCHHHHHHHhhhhhhhhhhcCCChhhHHhhhhhHHHHHHH
Q 018397 146 GMKPQEAISKVKTLSDVEGLCVAFACKNGSSDPVFAVKEPYTALDIEKITEEKLTSIFANSSSSLDVLNAAKQYKLHQRA 225 (356)
Q Consensus 146 ~~~~~~~~~~~~~Lr~v~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~ 225 (356)
.++ . .+..
T Consensus 219 ------------~v~---~--------------------~~~~------------------------------------- 226 (335)
T 3gon_A 219 ------------QIK---Q--------------------NINQ------------------------------------- 226 (335)
T ss_dssp ------------HHG---G--------------------GCCH-------------------------------------
T ss_pred ------------HHH---H--------------------HhHH-------------------------------------
Confidence 000 0 0000
Q ss_pred hhHHhHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHhhhh-cCCCChHHHHHHHHHHhCCCceeEEeccCCcceEE
Q 018397 226 AHVYSEAKRVHAFKDTVSSNLSEEDKLKKLGDLMNDSHHSCSVL-YECSCPELEELVNVCRNNGALGARLTGAGWGGCVV 304 (356)
Q Consensus 226 ~~~i~E~~rv~~~~~al~~~~~~~~~~~~lg~lm~~sh~~lr~~-~~vs~peld~lv~~a~~~Ga~GaklsGaG~GG~vi 304 (356)
.++.....++.+++.+|.++| ++.||++|+++|.+++++ +++++|++|.|++.+++.|+ |+||||||||||+|
T Consensus 227 ~~~~~~~~~~~~~~~aL~~~d-----~~~lg~lm~~~h~~l~~l~~~is~p~ld~l~~~a~~~g~-~akltGAG~Ggc~i 300 (335)
T 3gon_A 227 NFLTSSKETVVSLVEALEQGK-----SEKIIEQVEVASKLLEGLSTDIYTPLLRQLKEASQDLQA-VAKSSGAGGGDCGI 300 (335)
T ss_dssp HHHHHHHHHHHHHHHHHHHTC-----HHHHHHHHHHHHHHHHHHCTTTCCHHHHHHHHTTTTSSE-EEEECTTCSSSEEE
T ss_pred HHHHHHHHHHHHHHHHHHhCc-----HHHHHHHHHHHHHHHHhCCCcCCCHHHHHHHHHHHhCCc-EEEEccccchheEE
Confidence 011122345777889998774 999999999999999996 58999999999999999986 89999999999999
Q ss_pred EEecCCcHHHHHHHHHHHHHhcc
Q 018397 305 ALVKESIDSQFILNLKEQFYQSR 327 (356)
Q Consensus 305 ~l~~~~~~~~~~~~l~~~~~~~~ 327 (356)
+|++.+ +..++|++.|.+.+
T Consensus 301 al~~~~---~~~~~i~~~~~~~G 320 (335)
T 3gon_A 301 ALSFDA---QSTKTLKNRWADLG 320 (335)
T ss_dssp EEECSH---HHHHHHHHHHHHTT
T ss_pred EEECCH---HHHHHHHHHHHHCC
Confidence 999753 22344555554443
No 9
>2hfs_A Mevalonate kinase, putative; GHMP kinase, trypanosomatid parasite, transferase; 1.75A {Leishmania major} PDB: 2hfu_A*
Probab=100.00 E-value=8.5e-31 Score=250.94 Aligned_cols=233 Identities=24% Similarity=0.359 Sum_probs=176.4
Q ss_pred CcEEEEEEecCCCCCCCChHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhhh-hhCCCCCchhHHHHHhhcCCeEEEEe
Q 018397 13 QLFNHINSLFFNLGSGLSSSTAFVCSSTVALMAAFGVEVPKKEIAQLTCECEQ-FIGTQSGGMDQAISIMAKSGFAELID 91 (356)
Q Consensus 13 ~g~~i~i~s~IP~~~GLGSSaAl~va~~~al~~l~~~~ls~~el~~la~~~E~-~~g~~~G~~D~~~~~~Gg~~~~~~~d 91 (356)
+|+++.++++||.++|||||||+++|++.+++++++.++++++++++|.++|+ +.|.++|. |+.++++||. ++.+
T Consensus 96 ~g~~i~i~~~iP~g~GLGSSsA~~~a~~~al~~l~~~~l~~~~l~~~a~~~E~~~~G~~~G~-D~~~~~~Gg~---~~~~ 171 (332)
T 2hfs_A 96 DGLKMFIGGPLVPSSGIGASASDVVAFSRALSELYQLNLTDEEVNLSAFVGEGGYHGTPSGA-DNTAATYGGL---ILYR 171 (332)
T ss_dssp SEEEEEEECSCCCCTTSCHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHGGGSSSCCCSH-HHHHHHHCEE---EEEE
T ss_pred CceEEEEEcCCCCCCCccHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhcCCCCcH-hHHHHhcCCe---EEEe
Confidence 58999999999999999999999999999999999999999999999999998 67999986 9999999993 3443
Q ss_pred c-CC-CeeEEeecCCCcEEEEEecCcchhhhhhcccchhhHHHHHHHHHHHHHHHhCCCchhhhhhhccchhhhhhhhhh
Q 018397 92 F-NP-IRTTDVQLPAGGTFVVAHSLAESLKAITAASNYNNRVVECRLTAIVLAIKLGMKPQEAISKVKTLSDVEGLCVAF 169 (356)
Q Consensus 92 ~-~~-~~~~~~~~p~~~~~ll~~s~~~~~~~~~~~~~~~~r~~e~~~a~~~l~~~~~~~~~~~~~~~~~Lr~v~~~~~~~ 169 (356)
. .. ..+.++++|+++.+++++|+.+.+|... ++. +..+++.
T Consensus 172 ~~~g~~~~~~~~~~~~~~~vl~~~~~~~~T~~~------------------~~~------------~~~~~~~------- 214 (332)
T 2hfs_A 172 RQNGKSVFKPIAFQQRLYLVVVGTGINASTAKV------------------VND------------VHKMKQQ------- 214 (332)
T ss_dssp ECSSSEEEEEECCCSCEEEEEEECSCCCCHHHH------------------HHH------------HHHHHHH-------
T ss_pred cCCCCcceeeecCCCCcEEEEEECCCCccHHHH------------------HHH------------HHHHHHh-------
Confidence 2 22 2577888878899999999986543221 110 0001100
Q ss_pred hccCCCCCCcccccCCCCHHHHHHHhhhhhhhhhhcCCChhhHHhhhhhHHHHHHHhhHHhHHHHHHHHHHHHhcCCCch
Q 018397 170 ACKNGSSDPVFAVKEPYTALDIEKITEEKLTSIFANSSSSLDVLNAAKQYKLHQRAAHVYSEAKRVHAFKDTVSSNLSEE 249 (356)
Q Consensus 170 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~i~E~~rv~~~~~al~~~~~~~ 249 (356)
..+.+. .+++++.+ ++.+++.+|.++|
T Consensus 215 -----------------~~~~~~---------------------------~~~~~~~~------~~~~~~~al~~~d--- 241 (332)
T 2hfs_A 215 -----------------QPVQFK---------------------------RLYDNYTH------IVSQAREALQKGD--- 241 (332)
T ss_dssp -----------------CHHHHH---------------------------HHHHHHHH------HHHHHHHHHHHTC---
T ss_pred -----------------CHHHHH---------------------------HHHHHHHH------HHHHHHHHHHcCC---
Confidence 000000 01222222 3445678888764
Q ss_pred HHHHHHHHHHHHHHHHhhhhcCCCChHHHHHHHHHHhCCCceeEEeccCCcceEEEEecCC-cHHHHHHHHHHHHHhccc
Q 018397 250 DKLKKLGDLMNDSHHSCSVLYECSCPELEELVNVCRNNGALGARLTGAGWGGCVVALVKES-IDSQFILNLKEQFYQSRI 328 (356)
Q Consensus 250 ~~~~~lg~lm~~sh~~lr~~~~vs~peld~lv~~a~~~Ga~GaklsGaG~GG~vi~l~~~~-~~~~~~~~l~~~~~~~~~ 328 (356)
++.|+++|+++|..++. +++++|+++++++.+++.|++|+||||+|+|||+++|++.+ .++++.++|++.|....+
T Consensus 242 --~~~l~~~~~~~~~~l~~-~~~~~p~l~~l~~~~~~~Ga~ga~~sGaG~gg~v~~l~~~~~~a~~~~~~l~~~~~~~~~ 318 (332)
T 2hfs_A 242 --LQRLGQLMNANHDLCRQ-IDVSCRELESIVQTCRTYGALGAKLSGTGRGGIAVALAASSDQRDAIVKGLKAKCPEAKF 318 (332)
T ss_dssp --HHHHHHHHHHHHHHHHH-TTCCCHHHHHHHHHHHHTTCSEEEEESSCSSSEEEEEESSHHHHHHHHHHHHHHCTTCCE
T ss_pred --HHHHHHHHHHHHHHHHH-cCCCCHHHHHHHHHHHHcCCceEEeccCCCCcEEEEEecCcccHHHHHHHHHHHHhcCCc
Confidence 99999999999998887 58999999999999999999999999999999999999865 468899999877654332
Q ss_pred CCCcccCCCCcceEEEeecCCceee
Q 018397 329 DRGVINNNDLGLYVFASKPSSGAAK 353 (356)
Q Consensus 329 ~~~~~~~~~~~~~~~~~~p~~Ga~v 353 (356)
...+.+.|++||++
T Consensus 319 -----------~~~~~~~~~~g~~~ 332 (332)
T 2hfs_A 319 -----------IWRYTVQPSAASNL 332 (332)
T ss_dssp -----------EEEEEECCSCC---
T ss_pred -----------eEEEEeccCCCCCC
Confidence 13467788899874
No 10
>4hac_A Mevalonate kinase; GHMP, ATP binding, phosphorylation, transferase; 1.92A {Methanosarcina mazei}
Probab=99.98 E-value=1.7e-30 Score=248.49 Aligned_cols=224 Identities=27% Similarity=0.260 Sum_probs=169.1
Q ss_pred CCcEEEEEEecCCCCCCCChHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhhh-hhCCCCCchhHHHHHhhcCCeEEEE
Q 018397 12 FQLFNHINSLFFNLGSGLSSSTAFVCSSTVALMAAFGVEVPKKEIAQLTCECEQ-FIGTQSGGMDQAISIMAKSGFAELI 90 (356)
Q Consensus 12 ~~g~~i~i~s~IP~~~GLGSSaAl~va~~~al~~l~~~~ls~~el~~la~~~E~-~~g~~~G~~D~~~~~~Gg~~~~~~~ 90 (356)
.+|+++.++++||.++|||||||+++|++.+++++++.++++++++++|.++|+ +.|. +|++|++++++||. +++
T Consensus 95 ~~g~~i~i~~~iP~g~GLGSSsa~~va~~~al~~l~~~~l~~~~l~~la~~~e~~~~g~-~~~~D~~~~~~Gg~---~~~ 170 (321)
T 4hac_A 95 INGVFLTVDSDIPVGSGLGSSAAVTIASIGALNELFGFGLSLQEIAKLGHEIEIKVQGA-ASPTDTYVSTFGGV---VTI 170 (321)
T ss_dssp CCCEEEEEEECCCSCTTCCHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHSC-CCSHHHHHHHHCSE---EEE
T ss_pred CCCEEEEEECCCCCCCCccHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCC-CcHHHHHHHHcCCe---EEE
Confidence 468999999999999999999999999999999999999999999999999998 6677 67899999999993 344
Q ss_pred ecCCCeeEEeecCCCcEEEEEecCcchhhhhhcccchhhHHHHHHHHHHHHHHHhCCCchhhhhhhccchhhhhhhhhhh
Q 018397 91 DFNPIRTTDVQLPAGGTFVVAHSLAESLKAITAASNYNNRVVECRLTAIVLAIKLGMKPQEAISKVKTLSDVEGLCVAFA 170 (356)
Q Consensus 91 d~~~~~~~~~~~p~~~~~ll~~s~~~~~~~~~~~~~~~~r~~e~~~a~~~l~~~~~~~~~~~~~~~~~Lr~v~~~~~~~~ 170 (356)
.+. +++++| ++.+++++|+.+.+|... ....+. +++.
T Consensus 171 -~~~---~~l~~p-~~~~vlv~p~~~~sT~~~------------~~~~~~------------------l~~~-------- 207 (321)
T 4hac_A 171 -PER---RKLKTP-DCGIVIGDTGVFSSTKEL------------VANVRQ------------------LRES-------- 207 (321)
T ss_dssp -TTC---CEECCC-CCEEEEEECCCCCCHHHH------------HHHHHH------------------HHHH--------
T ss_pred -cCC---ceeccC-CCEEEEEECCCCccHHHH------------HHHHHH------------------HHhc--------
Confidence 222 234456 899999999986543321 111110 1100
Q ss_pred ccCCCCCCcccccCCCCHHHHHHHhhhhhhhhhhcCCChhhHHhhhhhHHHHHHHhhHHhHHHHHHHHHHHHhcCCCchH
Q 018397 171 CKNGSSDPVFAVKEPYTALDIEKITEEKLTSIFANSSSSLDVLNAAKQYKLHQRAAHVYSEAKRVHAFKDTVSSNLSEED 250 (356)
Q Consensus 171 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~i~E~~rv~~~~~al~~~~~~~~ 250 (356)
.+ ..+.+ ...+. . ..+.+++++|.++
T Consensus 208 ---------------~~-~~~~~---------------------------~~~~~----~--~~~~~~~~al~~~----- 233 (321)
T 4hac_A 208 ---------------YP-DLIEP---------------------------LMTSI----G--KISRIGEQLVLSG----- 233 (321)
T ss_dssp ---------------CH-HHHHH---------------------------HHHHH----H--HHHHHHHHHHHHT-----
T ss_pred ---------------CH-HHHHH---------------------------HHHHH----H--HHHHHHHHHHHhC-----
Confidence 00 00000 01111 1 1234567888876
Q ss_pred HHHHHHHHHHHHHHHhhhhcCCCChHHHHHHHHHHhCCCceeEEeccCCcceEEEEecCCcHHHHHHHHHHHHHhcccCC
Q 018397 251 KLKKLGDLMNDSHHSCSVLYECSCPELEELVNVCRNNGALGARLTGAGWGGCVVALVKESIDSQFILNLKEQFYQSRIDR 330 (356)
Q Consensus 251 ~~~~lg~lm~~sh~~lr~~~~vs~peld~lv~~a~~~Ga~GaklsGaG~GG~vi~l~~~~~~~~~~~~l~~~~~~~~~~~ 330 (356)
|++.||++|+++|..+ +.+++++|++|++++.+++.|++|+||||+|+|||+++|++++.++++.+.|++. +
T Consensus 234 d~~~lg~~~~~~~~~~-~~~~v~~p~l~~l~~~a~~~Ga~ga~~SGaG~GG~v~al~~~~~a~~~~~~l~~~----g--- 305 (321)
T 4hac_A 234 DYASIGRLMNVNQGLL-DALGVNILELSQLIYSARAAGAFGAKITGAGGGGCMVALTAPEKCNQVAEAVAGA----G--- 305 (321)
T ss_dssp CHHHHHHHHHHHHHHH-HHHTCCCHHHHHHHHHHHHTTCSEEEECSSCSSSEEEEEECSTTHHHHHHHHHHT----T---
T ss_pred CHHHHHHHHHHHHHHH-hhcCCCCHHHHHHHHHHHHCCCCEEEECccCCCCEEEEEcCHHHHHHHHHHHHhC----C---
Confidence 4999999999998755 4569999999999999999999999999999999999999767788887777532 1
Q ss_pred CcccCCCCcceEEEeecCC-ceee
Q 018397 331 GVINNNDLGLYVFASKPSS-GAAK 353 (356)
Q Consensus 331 ~~~~~~~~~~~~~~~~p~~-Ga~v 353 (356)
..++.+++.+ |++|
T Consensus 306 ---------~~v~~~~~~~~G~~v 320 (321)
T 4hac_A 306 ---------GKVTITKPTEQGLKV 320 (321)
T ss_dssp ---------CEEEEECBCSCSSEE
T ss_pred ---------CeEEEEEECCCceec
Confidence 2688888875 9886
No 11
>2pg9_A Phosphomevalonate kinase; GHMP kinase superfamily, transferase; HET: PMV ANP; 1.90A {Streptococcus pneumoniae} PDB: 1k47_A* 3gon_A*
Probab=99.98 E-value=2.3e-31 Score=256.07 Aligned_cols=210 Identities=17% Similarity=0.151 Sum_probs=163.9
Q ss_pred cCCcEEEEEEecCCCC---CCCChHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhhhhhCCCCCchhHHHHHhhcCCeE
Q 018397 11 KFQLFNHINSLFFNLG---SGLSSSTAFVCSSTVALMAAFGVEVPKKEIAQLTCECEQFIGTQSGGMDQAISIMAKSGFA 87 (356)
Q Consensus 11 ~~~g~~i~i~s~IP~~---~GLGSSaAl~va~~~al~~l~~~~ls~~el~~la~~~E~~~g~~~G~~D~~~~~~Gg~~~~ 87 (356)
..+||++.|+|+||.+ +|||||||+++|++.|++++++.++++++++++|..+|.+.|.++|++|++++++||....
T Consensus 85 ~~~g~~i~i~s~iP~~g~k~GLgSSaa~~va~~~al~~~~~~~l~~~~l~~la~~~E~~~~~~~~~~D~~~~~~Gg~~~~ 164 (337)
T 2pg9_A 85 NLRPFSLAIYGKMEREGKKFGLGSSGSVVVLVVKALLALYNLSVDQNLLFKLTSAVLLKRGDNGSMGDLACIAAEDLVLY 164 (337)
T ss_dssp CCCCEEEEEECCSEETTEECSSCHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTTCCSCSHHHHHHHHTSCEEE
T ss_pred CCCCEEEEEEccCCCCCCCccccHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHhCCEEEE
Confidence 3579999999999999 9999999999999999999999999999999999999988899999999999999996322
Q ss_pred EEEecC-------------------CCeeEEeecCCCcEEEEEecCcchhhhhhcccchhhHHHHHHHHHHHHHHHhCCC
Q 018397 88 ELIDFN-------------------PIRTTDVQLPAGGTFVVAHSLAESLKAITAASNYNNRVVECRLTAIVLAIKLGMK 148 (356)
Q Consensus 88 ~~~d~~-------------------~~~~~~~~~p~~~~~ll~~s~~~~~~~~~~~~~~~~r~~e~~~a~~~l~~~~~~~ 148 (356)
...+.. +..++++++|.++.+++++|+.+++|... ++.+
T Consensus 165 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~lvl~~~~~~~~T~~~---------------~~~~------- 222 (337)
T 2pg9_A 165 QSFDRQKVAAWLEEENLATVLERDWGFSISQVKPTLECDFLVGWTKEVAVSSHM---------------VQQI------- 222 (337)
T ss_dssp ECCCHHHHHHHHHHSCHHHHHHSCCCCEEEECCCCSCCEEEEEECCCCCCHHHH---------------HHHH-------
T ss_pred ecCChHHhhhhhcccchhhhcccccccceeeecCCCCceEEEEECCCccchHHH---------------HHHH-------
Confidence 111321 23577788888999999999986543221 0000
Q ss_pred chhhhhhhccchhhhhhhhhhhccCCCCCCcccccCCCCHHHHHHHhhhhhhhhhhcCCChhhHHhhhhhHHHHHHHhhH
Q 018397 149 PQEAISKVKTLSDVEGLCVAFACKNGSSDPVFAVKEPYTALDIEKITEEKLTSIFANSSSSLDVLNAAKQYKLHQRAAHV 228 (356)
Q Consensus 149 ~~~~~~~~~~Lr~v~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~ 228 (356)
+.. +.. + ...+
T Consensus 223 --------~~~--------------------------~~~-~------------------------------~~~~---- 233 (337)
T 2pg9_A 223 --------KQN--------------------------INQ-N------------------------------FLTS---- 233 (337)
T ss_dssp --------GGG--------------------------CCH-H------------------------------HHHH----
T ss_pred --------HHH--------------------------HHH-H------------------------------HHHH----
Confidence 000 000 0 0011
Q ss_pred HhHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHhhhhc-CCCChHHHHHHHHHHhCCCceeEEeccCCcceEEEEe
Q 018397 229 YSEAKRVHAFKDTVSSNLSEEDKLKKLGDLMNDSHHSCSVLY-ECSCPELEELVNVCRNNGALGARLTGAGWGGCVVALV 307 (356)
Q Consensus 229 i~E~~rv~~~~~al~~~~~~~~~~~~lg~lm~~sh~~lr~~~-~vs~peld~lv~~a~~~Ga~GaklsGaG~GG~vi~l~ 307 (356)
...++.++++||.++| ++.||++|+++|.++++++ ++++|++|++++.+++.|++ +||||||||||+++|+
T Consensus 234 --~~~~~~~~~~aL~~~d-----~~~lg~~m~~~~~~l~~l~~~v~~p~l~~l~~~a~~~Ga~-ak~sGaGgGg~vial~ 305 (337)
T 2pg9_A 234 --SKETVVSLVEALEQGK-----SEKIIEQVEVASKLLEGLSTDIYTPLLRQLKEASQDLQAV-AKSSGAGGGDCGIALS 305 (337)
T ss_dssp --HHHHHHHHHHHHHHTC-----HHHHHHHHHHHHHHHHHHCTTTCCHHHHHHHHTTTTSSEE-EEECTTCSSSEEEEEE
T ss_pred --HHHHHHHHHHHHHcCC-----HHHHHHHHHHHHHHHHHhcCcCCCHHHHHHHHHHHHCCCE-EEEeCCCCccEEEEEE
Confidence 1235567888998764 9999999999999999875 48999999999999999999 9999999999999999
Q ss_pred cCC-cHHHHHHHH
Q 018397 308 KES-IDSQFILNL 319 (356)
Q Consensus 308 ~~~-~~~~~~~~l 319 (356)
+++ .++++.++|
T Consensus 306 ~~~~~~~~~~~~l 318 (337)
T 2pg9_A 306 FDAQSTKTLKNRW 318 (337)
T ss_dssp CSHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHH
Confidence 753 445554444
No 12
>3k17_A LIN0012 protein; protein structure initiative II(PSI II), NYSGXRC, structural genomics, NEW YORK SGX research center for structural genomics; HET: PGE; 2.10A {Listeria innocua}
Probab=99.98 E-value=1.6e-30 Score=252.65 Aligned_cols=208 Identities=15% Similarity=0.157 Sum_probs=162.6
Q ss_pred CCcEEEEEEecCCC----CCCCChHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhhh-hhCCCCCchhHHHHHhhcCCe
Q 018397 12 FQLFNHINSLFFNL----GSGLSSSTAFVCSSTVALMAAFGVEVPKKEIAQLTCECEQ-FIGTQSGGMDQAISIMAKSGF 86 (356)
Q Consensus 12 ~~g~~i~i~s~IP~----~~GLGSSaAl~va~~~al~~l~~~~ls~~el~~la~~~E~-~~g~~~G~~D~~~~~~Gg~~~ 86 (356)
.+||++.|+|+||. ++|||||||+++|++.|++++++.++++++++++|..+|+ +.| ++|++|++++++||.
T Consensus 96 ~~g~~i~i~s~iP~~~g~~~GLgSSaa~~va~~~al~~~~~~~l~~~~l~~~a~~~E~~~~g-~~~g~D~~~~~~Gg~-- 172 (365)
T 3k17_A 96 LTPVKMVIETELIDQSGAKYGLGSSAAATVAVINALMTKFYPEISMLKKFKLAALSHLVVQG-NGSCGDIASCMYGGW-- 172 (365)
T ss_dssp CCCEEEEEEESSBCTTSCBCSSCHHHHHHHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHHS-SCCSHHHHHHHHCSE--
T ss_pred CCCEEEEEEcCCCCCCCCCCcccHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhCC-CCCcccHHHHhcCCE--
Confidence 47999999999996 5699999999999999999999999999999999999998 567 777899999999993
Q ss_pred EEEEe-cC----------------------CCeeEEeecCCCcEEEEEecCcchhhhhhcccchhhHHHHHHHHHHHHHH
Q 018397 87 AELID-FN----------------------PIRTTDVQLPAGGTFVVAHSLAESLKAITAASNYNNRVVECRLTAIVLAI 143 (356)
Q Consensus 87 ~~~~d-~~----------------------~~~~~~~~~p~~~~~ll~~s~~~~~~~~~~~~~~~~r~~e~~~a~~~l~~ 143 (356)
+++. +. +..++++++|.+ .+++++|+.++++... ++.+.
T Consensus 173 -~~~~~~~~~~~~~~~~~~~l~~l~~~~w~~~~~~~l~~~~~-~lll~~t~~~~sT~~~---------------~~~v~- 234 (365)
T 3k17_A 173 -IAYTTFDQEWVKHRLAYKSLEWFMKEPWPMLQIETLEEPVP-TFSVGWTGTPVSTGKL---------------VSQIH- 234 (365)
T ss_dssp -EEEECCCHHHHHHHHTTSCHHHHHHSCCTTCEEEEECCCSS-EEEEEECSCCCCHHHH---------------HHHHH-
T ss_pred -EEEecCCHHHhhhhcccchhhhhhccCCCCcceeeccCCcc-cEEEEECCCccchHHH---------------HHHHH-
Confidence 3433 21 346778888878 9999999987643221 00000
Q ss_pred HhCCCchhhhhhhccchhhhhhhhhhhccCCCCCCcccccCCCCHHHHHHHhhhhhhhhhhcCCChhhHHhhhhhHHHHH
Q 018397 144 KLGMKPQEAISKVKTLSDVEGLCVAFACKNGSSDPVFAVKEPYTALDIEKITEEKLTSIFANSSSSLDVLNAAKQYKLHQ 223 (356)
Q Consensus 144 ~~~~~~~~~~~~~~~Lr~v~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 223 (356)
.+++. .-.
T Consensus 235 --------------~~~~~----------------------------------------------------------~~~ 242 (365)
T 3k17_A 235 --------------AFKQE----------------------------------------------------------DSK 242 (365)
T ss_dssp --------------HHHHH----------------------------------------------------------CHH
T ss_pred --------------HHHHh----------------------------------------------------------ChH
Confidence 00000 001
Q ss_pred HHhhHHhHH-HHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHhhhhcCC------CChHHHHHHHHHHhCCCceeEEec
Q 018397 224 RAAHVYSEA-KRVHAFKDTVSSNLSEEDKLKKLGDLMNDSHHSCSVLYEC------SCPELEELVNVCRNNGALGARLTG 296 (356)
Q Consensus 224 r~~~~i~E~-~rv~~~~~al~~~~~~~~~~~~lg~lm~~sh~~lr~~~~v------s~peld~lv~~a~~~Ga~GaklsG 296 (356)
+..+++.|. .++.++++||.++| ++.||++|+++|.+||+ +++ ++|++|+|++.+++.|++ +||||
T Consensus 243 ~~~~~~~~~~~~~~~~~~aL~~gd-----~~~lg~lm~~~~~~l~~-l~v~~~~~is~p~ld~l~~~a~~~Ga~-ak~sG 315 (365)
T 3k17_A 243 NYQHFLTRNNEIMKQIIQAFHTKD-----EELLYSSIKENRRILQE-LGTKAGVNIETSLLKELADSAENMGGA-GKSSG 315 (365)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTC-----HHHHHHHHHHHHHHHHH-HHHHHTCCCSCHHHHHHHHHHHHTTSE-EEECT
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCC-----HHHHHHHHHHHHHHHHH-hhhhcCCcccCHHHHHHHHHHHhcCCE-EEecC
Confidence 123455554 35678899999774 99999999999999998 455 999999999999999998 99999
Q ss_pred cCCcceEEEEecCC-cHHHHHHHH
Q 018397 297 AGWGGCVVALVKES-IDSQFILNL 319 (356)
Q Consensus 297 aG~GG~vi~l~~~~-~~~~~~~~l 319 (356)
||||||+++|++++ .++++.+++
T Consensus 316 AGgGg~vial~~~~~~~~~l~~~l 339 (365)
T 3k17_A 316 SGGGDCGIAFSKTKELAEKLVNEW 339 (365)
T ss_dssp TCSSSEEEEEESSHHHHHHHHHHH
T ss_pred CCCCCEEEEEECCHHHHHHHHHHH
Confidence 99999999999763 344544444
No 13
>2x7i_A Mevalonate kinase; transferase; HET: CIT; 2.20A {Staphylococcus aureus}
Probab=99.97 E-value=1.8e-30 Score=246.10 Aligned_cols=216 Identities=21% Similarity=0.279 Sum_probs=165.5
Q ss_pred hhhcCCcEEEEEEecCCCCCCCChHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhhh-hhCCCCCchhHHHHHhhcCCe
Q 018397 8 IITKFQLFNHINSLFFNLGSGLSSSTAFVCSSTVALMAAFGVEVPKKEIAQLTCECEQ-FIGTQSGGMDQAISIMAKSGF 86 (356)
Q Consensus 8 ~~~~~~g~~i~i~s~IP~~~GLGSSaAl~va~~~al~~l~~~~ls~~el~~la~~~E~-~~g~~~G~~D~~~~~~Gg~~~ 86 (356)
+.+..+|+++.++++||.++|||||||+++|++.+++++++.++++++++++|.++|+ +.|.++| .|+.++.+||
T Consensus 80 ~~~~~~g~~i~i~~~iP~g~GLGSSsa~~~a~~~al~~l~~~~l~~~~l~~la~~~E~~~~g~~sG-~d~~~~~~g~--- 155 (308)
T 2x7i_A 80 LNNITEPLAVTIQTNLPPSRGLGSSAAVAVAFVRASYDFLGKSLTKEELIEKANWAEQIAHGKPSG-IDTQTIVSGK--- 155 (308)
T ss_dssp HTTCCSCEEEEEEECCCTTSSSCHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHSSCCH-HHHHHHHHTS---
T ss_pred HHhhCCCeEEEEeccCCCCCCccHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHCCCCch-HHHHHhhCCc---
Confidence 3344569999999999999999999999999999999999999999999999999998 7799997 5998888988
Q ss_pred EEEEecCCCeeEEeecCCCcEEEEEecCcchhhhhhcccchhhHHHHHHHHHHHHHHHhCCCchhhhhhhccchhhhhhh
Q 018397 87 AELIDFNPIRTTDVQLPAGGTFVVAHSLAESLKAITAASNYNNRVVECRLTAIVLAIKLGMKPQEAISKVKTLSDVEGLC 166 (356)
Q Consensus 87 ~~~~d~~~~~~~~~~~p~~~~~ll~~s~~~~~~~~~~~~~~~~r~~e~~~a~~~l~~~~~~~~~~~~~~~~~Lr~v~~~~ 166 (356)
.++++ +...++++++|.++.+++++|+.+.+|... ++.+++.
T Consensus 156 ~~~~~-~g~~~~~~~~~~~~~~vi~~~~~~~sT~~~---------------------------------~~~l~~~---- 197 (308)
T 2x7i_A 156 PVWFQ-KGHAETLKTLSLDGYMVVIDTGVKGSTRQA---------------------------------VHDVHKL---- 197 (308)
T ss_dssp CEEEE-TTEEEECSCCCBSSEEEEEECCC--CCSCC---------------------------------CC---------
T ss_pred eEEEE-cCCCceEeccCCCceEEEEECcCCCCHHHH---------------------------------HHHHHHH----
Confidence 34555 444567777666899999999875433211 0011100
Q ss_pred hhhhccCCCCCCcccccCCCCHHHHHHHhhhhhhhhhhcCCChhhHHhhhhhHHHHHHHhhHHhHHHHHHHHHHHHhcCC
Q 018397 167 VAFACKNGSSDPVFAVKEPYTALDIEKITEEKLTSIFANSSSSLDVLNAAKQYKLHQRAAHVYSEAKRVHAFKDTVSSNL 246 (356)
Q Consensus 167 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~i~E~~rv~~~~~al~~~~ 246 (356)
+... + ..++ ..++ ..++.+++.+|.++|
T Consensus 198 -------------------~~~~----------~-------------------~~~~-~~~~---~~~~~~~~~al~~~d 225 (308)
T 2x7i_A 198 -------------------CEDP----------Q-------------------YMSH-VKHI---GKLVLRASDVIEHHK 225 (308)
T ss_dssp ----------------------C----------C-------------------HHHH-HHHH---HHHHHHHHHHHHTTC
T ss_pred -------------------HhcC----------c-------------------hHHH-HHHH---HHHHHHHHHHHHcCC
Confidence 0000 0 0111 1221 135666778888764
Q ss_pred CchHHHHHHHHHHHHHHHHhhhhcCCCChHHHHHHHHHHhCCCceeEEeccCCcceEEEEecC-CcHHHHHHHHHHHH
Q 018397 247 SEEDKLKKLGDLMNDSHHSCSVLYECSCPELEELVNVCRNNGALGARLTGAGWGGCVVALVKE-SIDSQFILNLKEQF 323 (356)
Q Consensus 247 ~~~~~~~~lg~lm~~sh~~lr~~~~vs~peld~lv~~a~~~Ga~GaklsGaG~GG~vi~l~~~-~~~~~~~~~l~~~~ 323 (356)
++.||++|+++|.++++ +++++|+++++++.+++.|++|+||||+|+|||+++|+++ +.++++.++|++.|
T Consensus 226 -----~~~l~~~~~~~~~~~~~-~~~~~p~l~~l~~~~~~~Ga~ga~~sGaG~GG~v~~l~~~~~~~~~~~~~l~~~~ 297 (308)
T 2x7i_A 226 -----FEALADIFNECHADLKA-LTVSHDKIEQLMKIGKENGAIAGKLTGAGRGGSMLLLAKDLPTAKNIVKAVEKAG 297 (308)
T ss_dssp -----HHHHHHHHHHHHHHHHH-HSCCCHHHHHHHHHHHHTTCSEEEESBTTTCSSEEEEESSHHHHHHHHHHHHHTT
T ss_pred -----HHHHHHHHHHHHHHHHH-hCCCCHHHHHHHHHHHHCCCcEEEeeccCCCcEEEEEeCChhHHHHHHHHHHhCC
Confidence 99999999999999998 5899999999999999999999999999999999999987 56777777776543
No 14
>2oi2_A Mevalonate kinase; enzyme-inhibitor complex, transferase; HET: DP6; 2.50A {Streptococcus pneumoniae}
Probab=99.97 E-value=3.4e-29 Score=235.21 Aligned_cols=210 Identities=19% Similarity=0.239 Sum_probs=157.1
Q ss_pred CCcEEEEEEecCCCCCCCChHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhhh-hhCCCCCchhHHHHHhhcCCeEEEE
Q 018397 12 FQLFNHINSLFFNLGSGLSSSTAFVCSSTVALMAAFGVEVPKKEIAQLTCECEQ-FIGTQSGGMDQAISIMAKSGFAELI 90 (356)
Q Consensus 12 ~~g~~i~i~s~IP~~~GLGSSaAl~va~~~al~~l~~~~ls~~el~~la~~~E~-~~g~~~G~~D~~~~~~Gg~~~~~~~ 90 (356)
.+|+++.++++||.++|||||||+++|++.|++++++.++++++++++|.++|+ ..+.|+|. |++++.+||. +++
T Consensus 72 ~~g~~i~i~~~iP~g~GLGSSsa~~~a~~~al~~~~~~~l~~~~l~~la~~~E~~~~~~p~g~-d~~~~~~gg~---~~~ 147 (292)
T 2oi2_A 72 EACIRCEIDSAIPEKRGMGSSAAISIAAIRAVFDYYQADLPHDVLEILVNRAEMIAHMNPSGL-DAKTCLSDQP---IRF 147 (292)
T ss_dssp CCCEEEEEC----CCGGGSCHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHTTCCCCSH-HHHHHTCSSC---EEE
T ss_pred CCceEEEEEecCCCCCCchHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhcCCCCch-hHHHHhcCce---EEE
Confidence 368999999999999999999999999999999999999999999999999997 67999985 9999999984 333
Q ss_pred ecCCCeeEEeecCCCcEEEEEecCcchhhhhhcccchhhHHHHHHHHHHHHHHHhCCCchhhhhhhccchhhhhhhhhhh
Q 018397 91 DFNPIRTTDVQLPAGGTFVVAHSLAESLKAITAASNYNNRVVECRLTAIVLAIKLGMKPQEAISKVKTLSDVEGLCVAFA 170 (356)
Q Consensus 91 d~~~~~~~~~~~p~~~~~ll~~s~~~~~~~~~~~~~~~~r~~e~~~a~~~l~~~~~~~~~~~~~~~~~Lr~v~~~~~~~~ 170 (356)
.+....++++++....+++++|+.+.+|... .+.++..
T Consensus 148 -~~~~~~~~~~~~~~~~~~i~~~~~~~sT~~~---------------~~~l~~~-------------------------- 185 (292)
T 2oi2_A 148 -IKNVGFTELEMDLSAYLVIADTGVYGHTREA---------------IQVVQNK-------------------------- 185 (292)
T ss_dssp -ETTTEEEECCCCCSCEEEEEECSSCCCHHHH---------------HHHHHHT--------------------------
T ss_pred -EcCCCceeecCCCCCEEEEEECCCCCcHHHH---------------HHHHHHH--------------------------
Confidence 3344566666543333889999875443221 0011000
Q ss_pred ccCCCCCCcccccCCCCHHHHHHHhhhhhhhhhhcCCChhhHHhhhhhHHHHHHHhhHHhHHHHHHHHHHHHhcCCCchH
Q 018397 171 CKNGSSDPVFAVKEPYTALDIEKITEEKLTSIFANSSSSLDVLNAAKQYKLHQRAAHVYSEAKRVHAFKDTVSSNLSEED 250 (356)
Q Consensus 171 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~i~E~~rv~~~~~al~~~~~~~~ 250 (356)
.+ ..++..+.+. ..+.+++++|.++|
T Consensus 186 ------------------------~~------------------------~~~~~~~~~~--~~~~~~~~al~~~d---- 211 (292)
T 2oi2_A 186 ------------------------GK------------------------DALPFLHALG--ELTQQAEIAISQKD---- 211 (292)
T ss_dssp ------------------------GG------------------------GGHHHHHHHH--HHHHHHHHHHHTTC----
T ss_pred ------------------------Hh------------------------hhHHHHHHHH--HHHHHHHHHHHcCC----
Confidence 00 0011111111 12445678888764
Q ss_pred HHHHHHHHHHHHHHHhhhhcCCCChHHHHHHHHHHhCCCceeEEeccCCcceEEEEecC-CcHHHHHHHHHHHH
Q 018397 251 KLKKLGDLMNDSHHSCSVLYECSCPELEELVNVCRNNGALGARLTGAGWGGCVVALVKE-SIDSQFILNLKEQF 323 (356)
Q Consensus 251 ~~~~lg~lm~~sh~~lr~~~~vs~peld~lv~~a~~~Ga~GaklsGaG~GG~vi~l~~~-~~~~~~~~~l~~~~ 323 (356)
++.|+++|+++|..+++ +++++|+++++++.+++.|++|+||||+|+|||+++|+++ +.++++.+++++.+
T Consensus 212 -~~~l~~~~~~~~~~l~~-~~~~~p~l~~l~~~~~~~Ga~ga~~sGaG~Gg~v~~l~~~~~~~~~~~~~l~~~~ 283 (292)
T 2oi2_A 212 -AEGLGQILSQAHLHLKE-IGVSSLEADSLVETALSHGALGAKMSGGGLGGCIIALVTNLTHAQELAERLEEKG 283 (292)
T ss_dssp -HHHHHHHHHHHHHHHHH-TTCCCHHHHHHHHHHHTTTCSEEEEESSSSSSEEEEEESCHHHHHHHHHHHHHHT
T ss_pred -HHHHHHHHHHHHHHHHh-cCCCcHHHHHHHHHHHhCCCceeeeccCCCCcEEEEEecCchHHHHHHHHHHhcC
Confidence 99999999999999987 5899999999999999999999999999999999999986 56778888776654
No 15
>1kkh_A Mevalonate kinase; mixed beta sheet, phosphate-binding loop, beta-alpha-beta, transferase; 2.40A {Methanocaldococcus jannaschii} SCOP: d.14.1.5 d.58.26.3 PDB: 1vis_A
Probab=99.96 E-value=4.9e-28 Score=230.30 Aligned_cols=201 Identities=22% Similarity=0.312 Sum_probs=152.3
Q ss_pred CCcEEEEEEecCCCCCCCChHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhhh-hhCCCCCchhHHHHHhhcCCeEEEE
Q 018397 12 FQLFNHINSLFFNLGSGLSSSTAFVCSSTVALMAAFGVEVPKKEIAQLTCECEQ-FIGTQSGGMDQAISIMAKSGFAELI 90 (356)
Q Consensus 12 ~~g~~i~i~s~IP~~~GLGSSaAl~va~~~al~~l~~~~ls~~el~~la~~~E~-~~g~~~G~~D~~~~~~Gg~~~~~~~ 90 (356)
.+|+++.++++||.++|||||||+++|++.+++++++.++++++++++|.++|+ +.|.++ ++|+.++++||. .++
T Consensus 97 ~~g~~i~i~~~iP~~~GLGsSsa~~~a~~~al~~l~~~~l~~~~l~~~a~~~E~~~~g~~s-g~D~~~~~~Gg~---~~~ 172 (317)
T 1kkh_A 97 KTGFKINISSKIPISCGLGSSASITIGTIKAVSGFYNKELKDDEIAKLGYMVEKEIQGKAS-ITDTSTITYKGI---LEI 172 (317)
T ss_dssp CSCEEEEEEECSCSSSSSCHHHHHHHHHHHHHHHTTTCCCCHHHHHHHHHHHHHHHSSSCC-SHHHHHHHHCSE---EEE
T ss_pred CCCeEEEEecCCCCCCCchHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhcCCCc-hHHHHHHHhCCe---EEE
Confidence 469999999999999999999999999999999999999999999999999998 667765 499999999984 233
Q ss_pred ecCCCeeEEeecC--C----CcEEEEEecCcchhhhhhcccchhhHHHHHHHHHHHHHHHhCCCchhhhhhhccchhhhh
Q 018397 91 DFNPIRTTDVQLP--A----GGTFVVAHSLAESLKAITAASNYNNRVVECRLTAIVLAIKLGMKPQEAISKVKTLSDVEG 164 (356)
Q Consensus 91 d~~~~~~~~~~~p--~----~~~~ll~~s~~~~~~~~~~~~~~~~r~~e~~~a~~~l~~~~~~~~~~~~~~~~~Lr~v~~ 164 (356)
++..++++++| . ++.+++++|+.+.+|... .+.+ +.++
T Consensus 173 --~~~~~~~~~~~~~~~l~~~~~~vl~~~~~~~~T~~~---------------~~~~---------------~~~~---- 216 (317)
T 1kkh_A 173 --KNNKFRKIKGEFEEFLKNCKFLIVYAEKRKKKTAEL---------------VNEV---------------AKIE---- 216 (317)
T ss_dssp --SSSCEEEECHHHHHHHHTCCEEEEEEECCCSCHHHH---------------HHHH---------------HTCT----
T ss_pred --cCCCceEecCCcccccccCcEEEEEECCCcCcHHHH---------------HHHH---------------HHhh----
Confidence 34456666543 1 368999999986543211 0000 0000
Q ss_pred hhhhhhccCCCCCCcccccCCCCHHHHHHHhhhhhhhhhhcCCChhhHHhhhhhHHHHHHHhhHHhHHHHHHHHHHHHhc
Q 018397 165 LCVAFACKNGSSDPVFAVKEPYTALDIEKITEEKLTSIFANSSSSLDVLNAAKQYKLHQRAAHVYSEAKRVHAFKDTVSS 244 (356)
Q Consensus 165 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~i~E~~rv~~~~~al~~ 244 (356)
.. . ....+. .++ +.+++..
T Consensus 217 ----------------------~~---~---------------------------~~~~~~-------~~~--~~~a~~~ 235 (317)
T 1kkh_A 217 ----------------------NK---D---------------------------EIFKEI-------DKV--IDEALKI 235 (317)
T ss_dssp ----------------------TH---H---------------------------HHHHHH-------HHH--HHHHHHC
T ss_pred ----------------------cc---H---------------------------HHHHHH-------HHH--HHHHHHc
Confidence 00 0 001111 111 2355565
Q ss_pred CCCchHHHHHHHHHHHHHHHHhhhhcCCCChHHHHHHHHHHhCCCceeEEeccCCcceEEEEecCCcHHHHHHHHH
Q 018397 245 NLSEEDKLKKLGDLMNDSHHSCSVLYECSCPELEELVNVCRNNGALGARLTGAGWGGCVVALVKESIDSQFILNLK 320 (356)
Q Consensus 245 ~~~~~~~~~~lg~lm~~sh~~lr~~~~vs~peld~lv~~a~~~Ga~GaklsGaG~GG~vi~l~~~~~~~~~~~~l~ 320 (356)
+ |++.|+++|+++|..+++ +++++|+++++++.+++.| +|+||||+|+|||+++|++++.++++.++|+
T Consensus 236 ~-----d~~~l~~~~~~~~~~~~~-~~~~~p~l~~~~~~~~~~G-~ga~~sGaG~GG~v~~l~~~~~~~~~~~~l~ 304 (317)
T 1kkh_A 236 K-----NKEDFGKLMTKNHELLKK-LNISTPKLDRIVDIGNRFG-FGAKLTGAGGGGCVIILVNEEKEKELLKELN 304 (317)
T ss_dssp C-----SHHHHHHHHHHHHHHHHT-TTCCCHHHHHHHHHHHHHS-SEEEECSSSSSEEEEEECCGGGHHHHHHHHH
T ss_pred C-----CHHHHHHHHHHHHHHHHh-cCCCCHHHHHHHHHHHhcC-ceeEEeecCCCCEEEEEechhhHHHHHHHHH
Confidence 5 499999999999998876 5899999999999999999 9999999999999999998766777766664
No 16
>1h72_C HK, homoserine kinase; transferase, threonine biosynthesis; HET: ANP; 1.8A {Methanococcus jannaschii} SCOP: d.14.1.5 d.58.26.1 PDB: 1fwl_A 1fwk_A* 1h73_A* 1h74_A*
Probab=99.96 E-value=7.6e-28 Score=226.74 Aligned_cols=219 Identities=13% Similarity=0.155 Sum_probs=167.5
Q ss_pred CcEEEEEEecCCCCCCCChHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhhh-hhCCCCCchhHHHHHhhcCCeEEEEe
Q 018397 13 QLFNHINSLFFNLGSGLSSSTAFVCSSTVALMAAFGVEVPKKEIAQLTCECEQ-FIGTQSGGMDQAISIMAKSGFAELID 91 (356)
Q Consensus 13 ~g~~i~i~s~IP~~~GLGSSaAl~va~~~al~~l~~~~ls~~el~~la~~~E~-~~g~~~G~~D~~~~~~Gg~~~~~~~d 91 (356)
+|+++.++++||.++|||||||+++|++.+++++++.++++++++++|.++|. ..|.++ ..|..++++||. +++.+
T Consensus 75 ~g~~i~i~~~iP~g~GLGSSsa~~~a~~~al~~l~~~~l~~~~l~~la~~~e~~~~g~~~-~ddv~~~~~gg~--~~~~~ 151 (296)
T 1h72_C 75 KGVKITIKKGVKAGSGLGSSAASSAGTAYAINELFKLNLDKLKLVDYASYGELASSGAKH-ADNVAPAIFGGF--TMVTN 151 (296)
T ss_dssp CEEEEEEECSSCTTSSSCHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHSSCC-CTTHHHHHHCSE--EEEEE
T ss_pred CCeEEEEEcCCCCCCCccHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhcCcccCCCC-ccchHHHHhCCE--EEEEe
Confidence 58999999999999999999999999999999999999999999999999997 668776 244455899985 33344
Q ss_pred cCCCeeEEeecCCCcEEEEEecCcchhhhhhcccchhhHHHHHHHHHHHHHHHhCCCchhhhhhhccchhhhhhhhhhhc
Q 018397 92 FNPIRTTDVQLPAGGTFVVAHSLAESLKAITAASNYNNRVVECRLTAIVLAIKLGMKPQEAISKVKTLSDVEGLCVAFAC 171 (356)
Q Consensus 92 ~~~~~~~~~~~p~~~~~ll~~s~~~~~~~~~~~~~~~~r~~e~~~a~~~l~~~~~~~~~~~~~~~~~Lr~v~~~~~~~~g 171 (356)
..+..+.++++|+++.+++++|+.+.+|... . +.|.+
T Consensus 152 ~~~~~~~~~~~~~~~~~vl~~p~~~~~T~~~---------------~------------------~~l~~---------- 188 (296)
T 1h72_C 152 YEPLEVLHIPIDFKLDILIAIPNISINTKEA---------------R------------------EILPK---------- 188 (296)
T ss_dssp TTTTEEEEECCCSCCCEEEECCSSCCCHHHH---------------H------------------HTSCS----------
T ss_pred CCceEEEEEcCCCCeEEEEEeCCCCccHHHH---------------H------------------HhccC----------
Confidence 4445678888887899999999974322110 0 00000
Q ss_pred cCCCCCCcccccCCCCHHHHHHHhhhhhhhhhhcCCChhhHHhhhhhHHHHHHHhhHHhHHHHHHHHHHHHhcCCCchHH
Q 018397 172 KNGSSDPVFAVKEPYTALDIEKITEEKLTSIFANSSSSLDVLNAAKQYKLHQRAAHVYSEAKRVHAFKDTVSSNLSEEDK 251 (356)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~i~E~~rv~~~~~al~~~~~~~~~ 251 (356)
.+ +..|.+.+..|+.+++++|.++|
T Consensus 189 -------------~~-------------------------------------~~~~~~~~~~~~~~~~~al~~~d----- 213 (296)
T 1h72_C 189 -------------AV-------------------------------------GLKDLVNNVGKACGMVYALYNKD----- 213 (296)
T ss_dssp -------------CC-------------------------------------CHHHHHHHHHHHHHHHHHHHTTC-----
T ss_pred -------------cC-------------------------------------cHHHHHHHHHHHHHHHHHHHcCC-----
Confidence 00 01123444456667888998764
Q ss_pred HHHHHHHH--HHHHHHhhhhcCCCChHHHHHHHHHHhCCCceeEEeccCCcceEEEEecCCcHHHHHHHHHHHHHhcccC
Q 018397 252 LKKLGDLM--NDSHHSCSVLYECSCPELEELVNVCRNNGALGARLTGAGWGGCVVALVKESIDSQFILNLKEQFYQSRID 329 (356)
Q Consensus 252 ~~~lg~lm--~~sh~~lr~~~~vs~peld~lv~~a~~~Ga~GaklsGaG~GG~vi~l~~~~~~~~~~~~l~~~~~~~~~~ 329 (356)
++.||++| ++.|+.++. .++|+++++++.+++. ++|++|||+| +|+++|++++.++++.+.|++.|.
T Consensus 214 ~~~~~~~~~~n~~h~~~~~---~~~p~l~~~~~~~~~~-a~ga~~sGsG--~~v~~l~~~~~~~~~~~~l~~~~~----- 282 (296)
T 1h72_C 214 KSLFGRYMMSDKVIEPVRG---KLIPNYFKIKEEVKDK-VYGITISGSG--PSIIAFPKEEFIDEVENILRDYYE----- 282 (296)
T ss_dssp HHHHHHHHTTCCSSHHHHH---TTSTTHHHHHHHHTTT-EEEEEECTTS--SCEEEEECGGGHHHHHHHHHHHCS-----
T ss_pred HHHHHHHHhcCcchhhhhh---ccCccHHHHHHHHHhh-cceEEEecCC--hheEEEecHHHHHHHHHHHHHhcc-----
Confidence 99999999 666777764 5899999999999998 8999999888 599999966778888888866552
Q ss_pred CCcccCCCCcceEEEeecCCceeec
Q 018397 330 RGVINNNDLGLYVFASKPSSGAAKF 354 (356)
Q Consensus 330 ~~~~~~~~~~~~~~~~~p~~Ga~v~ 354 (356)
+ +++++|+.|++++
T Consensus 283 ---------~--~~~~~~~~Ga~v~ 296 (296)
T 1h72_C 283 ---------N--TIRTEVGKGVEVV 296 (296)
T ss_dssp ---------C--EEEECBCCCCEEC
T ss_pred ---------C--ceeccCCCCeEeC
Confidence 1 1277887799875
No 17
>3hul_A HSK, HK, homoserine kinase; structural genomics, putative homoserine kinase, THRB, amino-acid biosynthesis, ATP-binding, cytoplasm; 2.19A {Listeria monocytogenes}
Probab=99.93 E-value=2.7e-24 Score=203.38 Aligned_cols=218 Identities=18% Similarity=0.221 Sum_probs=153.1
Q ss_pred cCCcEEEEEEecCCCCCCCChHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhhhhhCCCCCchhHHHHHhhcCCeEEEE
Q 018397 11 KFQLFNHINSLFFNLGSGLSSSTAFVCSSTVALMAAFGVEVPKKEIAQLTCECEQFIGTQSGGMDQAISIMAKSGFAELI 90 (356)
Q Consensus 11 ~~~g~~i~i~s~IP~~~GLGSSaAl~va~~~al~~l~~~~ls~~el~~la~~~E~~~g~~~G~~D~~~~~~Gg~~~~~~~ 90 (356)
..+|+++.+.++||.++|||||||+++|++.+++++++.++++++++++|.++| +. ..|...+++||.. +.
T Consensus 68 ~~~g~~i~i~~~iP~~~GLGsssa~~~a~~~al~~~~~~~l~~~el~~la~~~e---g~---~ddv~~~~~GG~~---~~ 138 (298)
T 3hul_A 68 NLTPHHLVMTCDIPPARGLGSSSAAVVAGIELANTLAELNLSKEEKVRIAAEIE---GH---PDNVAPAVLGNWV---VG 138 (298)
T ss_dssp TCCCEEEEEEECSCTTSSSSHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHH---SC---STTHHHHHHCSEE---EE
T ss_pred cCCceEEEEecCCCCCCCccHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhc---CC---cccCcccccCCEE---EE
Confidence 457999999999999999999999999999999999999999999999999998 21 1455568899952 33
Q ss_pred ecCC--CeeEEeecCCCcEEEEEecCcchhhhhhcccchhhHHHHHHHHHHHHHHHhCCCchhhhhhhccchhhhhhhhh
Q 018397 91 DFNP--IRTTDVQLPAGGTFVVAHSLAESLKAITAASNYNNRVVECRLTAIVLAIKLGMKPQEAISKVKTLSDVEGLCVA 168 (356)
Q Consensus 91 d~~~--~~~~~~~~p~~~~~ll~~s~~~~~~~~~~~~~~~~r~~e~~~a~~~l~~~~~~~~~~~~~~~~~Lr~v~~~~~~ 168 (356)
..+. ..+.++++| ++.+++++|+.+.+|... | +.|.+
T Consensus 139 ~g~ge~~~~~~~~~p-~~~~vlv~p~~~~sT~~a-------~--------------------------~~l~~------- 177 (298)
T 3hul_A 139 AKLDGEDFYVRHLFP-DCALIAFIPKAELLTSES-------R--------------------------GVLPD------- 177 (298)
T ss_dssp EEETTEEEEEEECCC--CEEEEEECCCCCC-----------------------------------------CC-------
T ss_pred EeCCCcEEEEEcCCC-CeEEEEEECCCCCCcHHH-------H--------------------------HHHhh-------
Confidence 3322 234466665 599999999874322110 0 00100
Q ss_pred hhccCCCCCCcccccCCCCHHHHHHHhhhhhhhhhhcCCChhhHHhhhhhHHHHHHHhhHHhHHHHHHHHHHHHhcCCCc
Q 018397 169 FACKNGSSDPVFAVKEPYTALDIEKITEEKLTSIFANSSSSLDVLNAAKQYKLHQRAAHVYSEAKRVHAFKDTVSSNLSE 248 (356)
Q Consensus 169 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~i~E~~rv~~~~~al~~~~~~ 248 (356)
.++ +.. .+.+..++..++.+|.++|
T Consensus 178 ----------------~~~----------------------------------~~~---~~~~~~~~~~~~~al~~~d-- 202 (298)
T 3hul_A 178 ----------------TLP----------------------------------FKE---AVQASSIANVMIAAILRND-- 202 (298)
T ss_dssp ----------------EEE----------------------------------HHH---HHHHHHHHHHHHHHHTTTC--
T ss_pred ----------------hcc----------------------------------HHH---HHHHHHHHHHHHHHHHcCC--
Confidence 000 000 0112234556778888764
Q ss_pred hHHHHHHHHHHHH--HHHHhhhhcCCCChHHHHHHHHHHhCCCceeEEeccCCcceEEEEecCCcHHHHHHHHHHHHHhc
Q 018397 249 EDKLKKLGDLMND--SHHSCSVLYECSCPELEELVNVCRNNGALGARLTGAGWGGCVVALVKESIDSQFILNLKEQFYQS 326 (356)
Q Consensus 249 ~~~~~~lg~lm~~--sh~~lr~~~~vs~peld~lv~~a~~~Ga~GaklsGaG~GG~vi~l~~~~~~~~~~~~l~~~~~~~ 326 (356)
++.|+++|+. .|+.++.. .+|+++++++.+++.|++|++|||+| +|+++|++++.++++.+.|+ +.
T Consensus 203 ---~~~l~~~l~nd~~~e~~~~~---~~p~l~~l~~~~~~~Ga~ga~~SGsG--ptv~al~~~~~a~~v~~~l~----~~ 270 (298)
T 3hul_A 203 ---MTLAGEMMERDLWHEKYRSQ---LVPHLAQIRDVAKNQGAYAACLSGAG--PTVLVFAPRNLANKLQTSLQ----TL 270 (298)
T ss_dssp ---HHHHHHHHTCCCC-----CT---TGGGHHHHHHHHHTTTCCEEEECTTS--SCEEEEECGGGHHHHHHHHH----TT
T ss_pred ---HHHHHHHHhhhHHHHHHHHh---hCchHHHHHHHHHHCCCEEEEEeccc--hheEEEECHHHHHHHHHHHH----hc
Confidence 9999999973 36766654 58999999999999999999999888 89999998666666665553 22
Q ss_pred ccCCCcccCCCCcceEEEeecCC-ceeecc
Q 018397 327 RIDRGVINNNDLGLYVFASKPSS-GAAKFK 355 (356)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~~~p~~-Ga~v~~ 355 (356)
+ .++.++++++.+ |++|.+
T Consensus 271 ~----------~~~~~~~~~~~~~Ga~v~~ 290 (298)
T 3hul_A 271 E----------IDADVLLLDVEGSGAEVFR 290 (298)
T ss_dssp C----------CSSEEEEEEBCCCCCEEEE
T ss_pred C----------CCcEEEEcccCCCceEEEe
Confidence 2 256788999975 999875
No 18
>3pyf_A 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; transferase; HET: ANP; 1.70A {Mycobacterium tuberculosis} PDB: 3pyd_A* 3pye_A* 3pyg_A* 4ed4_A* 4dxl_A* 4emd_A*
Probab=99.91 E-value=2.2e-23 Score=197.75 Aligned_cols=213 Identities=14% Similarity=0.128 Sum_probs=154.3
Q ss_pred CcEEEEEEecCCCCCCCChHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhhhhhCCCCCchhHHHHHhhcCCeEEEEec
Q 018397 13 QLFNHINSLFFNLGSGLSSSTAFVCSSTVALMAAFGVEVPKKEIAQLTCECEQFIGTQSGGMDQAISIMAKSGFAELIDF 92 (356)
Q Consensus 13 ~g~~i~i~s~IP~~~GLGSSaAl~va~~~al~~l~~~~ls~~el~~la~~~E~~~g~~~G~~D~~~~~~Gg~~~~~~~d~ 92 (356)
+|+++.++++||.++|||||||.++|++.+++++++.++++++++++|.++| .|...+++|| +.+...
T Consensus 87 ~~~~i~i~~~iP~~~GLGsssa~a~a~l~al~~~~~~~l~~~~l~~la~~~~---------~Dv~~~~~Gg---~~~~~g 154 (306)
T 3pyf_A 87 PDVSIMIDKSIPVAGGMAGGSADAAAVLVAMNSLWELNVPRRDLRMLAARLG---------SDVPFALHGG---TALGTG 154 (306)
T ss_dssp CCEEEEEEECSCTTSSSCHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHC---------TTHHHHHHBS---EEEECS
T ss_pred CCeEEEEecCCCCCCCcchHHHHHHHHHHHHHHHhCCCcCHHHHHHHHHHhC---------CCCceeecCc---eEEEEe
Confidence 5899999999999999999999999999999999999999999999999987 5899999999 345554
Q ss_pred CCCeeEEeecCCCcEEEEEecCcchhhhhhcccchhhHHHHHHHHHHHHHHHhCCCchhhhhhhccchhhhhhhhhhhcc
Q 018397 93 NPIRTTDVQLPAGGTFVVAHSLAESLKAITAASNYNNRVVECRLTAIVLAIKLGMKPQEAISKVKTLSDVEGLCVAFACK 172 (356)
Q Consensus 93 ~~~~~~~~~~p~~~~~ll~~s~~~~~~~~~~~~~~~~r~~e~~~a~~~l~~~~~~~~~~~~~~~~~Lr~v~~~~~~~~g~ 172 (356)
++..+.+++.|++|.+++++|+.+.+|... .+.+... +
T Consensus 155 ~ge~~~~l~~~~~~~~vl~~P~~~vsT~~a---------------~~~l~~~---------------~------------ 192 (306)
T 3pyf_A 155 RGEELATVLSRNTFHWVLAFADSGLLTSAV---------------YNELDRL---------------R------------ 192 (306)
T ss_dssp SSSCCEEECCSSCEEEEEEECSSCCCHHHH---------------HHHHHHH---------------H------------
T ss_pred eCCeEEEccCCCCcEEEEEECCCCCcHHHH---------------HHhhhhh---------------c------------
Confidence 555677888878999999999975432211 0000000 0
Q ss_pred CCCCCCcccccCCCCHHHHHHHhhhhhhhhhhcCCChhhHHhhhhhHHHHHHHhhHHhHHHHHHHHHHHHhcCCCchHHH
Q 018397 173 NGSSDPVFAVKEPYTALDIEKITEEKLTSIFANSSSSLDVLNAAKQYKLHQRAAHVYSEAKRVHAFKDTVSSNLSEEDKL 252 (356)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~i~E~~rv~~~~~al~~~~~~~~~~ 252 (356)
.. .+ ..+ ..++..++.+|.++ |+
T Consensus 193 -----------------------~~--~~-----------------------~~~----~~~~~~~~~al~~~-----d~ 215 (306)
T 3pyf_A 193 -----------------------EV--GD-----------------------PPR----LGEPGPVLAALAAG-----DP 215 (306)
T ss_dssp -----------------------HH--SC-----------------------CCC----CCCHHHHHHHHHHT-----CH
T ss_pred -----------------------cc--cc-----------------------ccc----ccCHHHHHHHHHhC-----CH
Confidence 00 00 000 01233456777766 49
Q ss_pred HHHHHHHHHHHHHhhhhcCCCChHHHHHHHHHHhCCCceeEEeccCCcceEEEEecCC-cHHHHHHHHHHHHHhcccCCC
Q 018397 253 KKLGDLMNDSHHSCSVLYECSCPELEELVNVCRNNGALGARLTGAGWGGCVVALVKES-IDSQFILNLKEQFYQSRIDRG 331 (356)
Q Consensus 253 ~~lg~lm~~sh~~lr~~~~vs~peld~lv~~a~~~Ga~GaklsGaG~GG~vi~l~~~~-~~~~~~~~l~~~~~~~~~~~~ 331 (356)
+.|+++|.+..+..+. ..+|+++++++.+++.|++|++|||+| +|+++|++.+ .++++.+.|++ .+
T Consensus 216 ~~l~~~l~n~le~~~~---~~~P~l~~i~~~~~~~Ga~ga~mSGsG--ptvfal~~~~~~a~~~~~~l~~----~g---- 282 (306)
T 3pyf_A 216 DQLAPLLGNEMQAAAV---SLDPALARALRAGVEAGALAGIVSGSG--PTCAFLCTSASSAIDVGAQLSG----AG---- 282 (306)
T ss_dssp HHHGGGCEETTHHHHH---HHCTHHHHHHHHHHHTTCSEEEECTTS--SEEEEEESSHHHHHHHHHHHHH----TT----
T ss_pred HHHHHHhccchHHHHH---HhChHHHHHHHHHHhcCCCEEEEcCcc--hhheEEeCCHHHHHHHHHHHHh----cC----
Confidence 9999988533333322 248999999999999999999999887 9999999763 45555555533 22
Q ss_pred cccCCCCcceEEEeecCC-ceeecc
Q 018397 332 VINNNDLGLYVFASKPSS-GAAKFK 355 (356)
Q Consensus 332 ~~~~~~~~~~~~~~~p~~-Ga~v~~ 355 (356)
+...++++++.+ ||+|..
T Consensus 283 ------~~~~v~~~~~~~~Ga~v~~ 301 (306)
T 3pyf_A 283 ------VCRTVRVATGPVPGARVVS 301 (306)
T ss_dssp ------SSSEEEEEEECCBCSEEC-
T ss_pred ------CcceEEEeecCCCCCEEec
Confidence 245688877765 999863
No 19
>2gs8_A Mevalonate pyrophosphate decarboxylase; streptococcus pyogen structural genomics, PSI, protein structure initiative; HET: MSE; 1.50A {Streptococcus pyogenes m1 gas}
Probab=99.90 E-value=2e-22 Score=191.91 Aligned_cols=215 Identities=16% Similarity=0.123 Sum_probs=149.4
Q ss_pred CcEEEEEEecCCCCCCCChHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhhhhhCCCCCchhHHHHHhhcCCeEEEEec
Q 018397 13 QLFNHINSLFFNLGSGLSSSTAFVCSSTVALMAAFGVEVPKKEIAQLTCECEQFIGTQSGGMDQAISIMAKSGFAELIDF 92 (356)
Q Consensus 13 ~g~~i~i~s~IP~~~GLGSSaAl~va~~~al~~l~~~~ls~~el~~la~~~E~~~g~~~G~~D~~~~~~Gg~~~~~~~d~ 92 (356)
+|++|.++++||.++|||||||.++|++.|++++++.++++++++++|.+++ | +...+++||+ .....
T Consensus 91 ~g~~I~i~~~IP~~~GLGSSaA~~vA~~~al~~l~g~~ls~~el~~la~~~~---G------~~~~~~~GG~---~~~~~ 158 (317)
T 2gs8_A 91 AFVKMETQNNMPTAAGLSSSSSGLSALVKACDQLFDTQLDQKALAQKAKFAS---G------SSSRSFFGPV---AAWDK 158 (317)
T ss_dssp CCEEEEEECCSCGGGCCCHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHH---G------GGGGGGSCSE---EEECT
T ss_pred CCeEEEEeCCCCCCCchHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhhc---c------hhHhhhcCCh---heEee
Confidence 6899999999999999999999999999999999999999999999998875 2 3345789984 34433
Q ss_pred CCCeeEEeecCCCcEEEEE--ecCcchhhhhhcccchhhHHHHHHHHHHHHHHHhCCCchhhhhhhccchhhhhhhhhhh
Q 018397 93 NPIRTTDVQLPAGGTFVVA--HSLAESLKAITAASNYNNRVVECRLTAIVLAIKLGMKPQEAISKVKTLSDVEGLCVAFA 170 (356)
Q Consensus 93 ~~~~~~~~~~p~~~~~ll~--~s~~~~~~~~~~~~~~~~r~~e~~~a~~~l~~~~~~~~~~~~~~~~~Lr~v~~~~~~~~ 170 (356)
.+......++|.++.++++ +++... ......|+.
T Consensus 159 ~~~~~~~~~~~~~~~~~v~i~~~~~~~---~~tt~~~~~----------------------------------------- 194 (317)
T 2gs8_A 159 DSGAIYKVETDLKMAMIMLVLNAAKKP---ISSREGMKL----------------------------------------- 194 (317)
T ss_dssp TTCCEEECCCCCCEEEEEEECCCSSCC---SCHHHHHHH-----------------------------------------
T ss_pred CCCceeEEEccccccEEEEEEECCCcC---cccHHHHHH-----------------------------------------
Confidence 3333344455656775444 443211 100011110
Q ss_pred ccCCCCCCcccccCCCCHHHHHHHhhhhhhhhhhcCCChhhHHhhhhhHHHHHHHhhHHhHHHHHHHHHHHHhcCCCchH
Q 018397 171 CKNGSSDPVFAVKEPYTALDIEKITEEKLTSIFANSSSSLDVLNAAKQYKLHQRAAHVYSEAKRVHAFKDTVSSNLSEED 250 (356)
Q Consensus 171 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~i~E~~rv~~~~~al~~~~~~~~ 250 (356)
.++.. . ...+++.+. ..++.+++.||.++|
T Consensus 195 -----------------------~~~~~--~------------------~~~~~~~~~---~~~~~~~~~al~~~d---- 224 (317)
T 2gs8_A 195 -----------------------CRDTS--T------------------TFDQWVEQS---AIDYQHMLTYLKTNN---- 224 (317)
T ss_dssp -----------------------HHHHC--T------------------THHHHHHHH---HHHHHHHHHHHHTTC----
T ss_pred -----------------------HhhcC--H------------------HHHHHHHHH---HHHHHHHHHHHHcCC----
Confidence 00000 0 001122221 356778889999875
Q ss_pred HHHHHHHHHHHHHHHhhhhcCCCCh-------HHHHHHHH---HHhCCCceeEEeccCCcceEEEEecCCcHHHHHHHHH
Q 018397 251 KLKKLGDLMNDSHHSCSVLYECSCP-------ELEELVNV---CRNNGALGARLTGAGWGGCVVALVKESIDSQFILNLK 320 (356)
Q Consensus 251 ~~~~lg~lm~~sh~~lr~~~~vs~p-------eld~lv~~---a~~~Ga~GaklsGaG~GG~vi~l~~~~~~~~~~~~l~ 320 (356)
++.||++|+++|..|++.|..++| ....+++. +++.|+.++.|||+| ||+++|++++.++++.+.++
T Consensus 225 -~~~lg~~~~~~~~~l~~~~~~~~p~~~~l~~~~~~i~~~~~~~~~~G~~~~~~SGaG--ptv~~l~~~~~~~~v~~~l~ 301 (317)
T 2gs8_A 225 -FEKVGQLTEANALAMHATTKTANPPFSYLTKESYQAMEAVKELRQEGFACYFTMDAG--PNVKVLCLEKDLAQLAERLG 301 (317)
T ss_dssp -HHHHHHHHHHHHHHHHHHHTTSSSCCCSCCHHHHHHHHHHHHHHHTTCCEEEECCSS--SCEEEEEEGGGHHHHHHHHH
T ss_pred -HHHHHHHHHHHHHHHHHHhhccCCCceeEhHHHHHHHHHHHHHHhcCCcEEEEecCC--CeEEEEEcHHHHHHHHHHHh
Confidence 999999999999888877655544 45666654 344899999999877 99999998776777777765
Q ss_pred HHHHhcccCCCcccCCCCcceEEEeecCCceee
Q 018397 321 EQFYQSRIDRGVINNNDLGLYVFASKPSSGAAK 353 (356)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~Ga~v 353 (356)
+ . ..+|++++++|++|
T Consensus 302 ~-----~------------~~~~~~~~~~~~~~ 317 (317)
T 2gs8_A 302 K-----N------------YRIIVSKTKDLPDV 317 (317)
T ss_dssp T-----T------------SEEEEEEBCCCCCC
T ss_pred c-----C------------CeEEEEecCCCCCC
Confidence 4 1 26999999999986
No 20
>3qt5_A Mevalonate diphosphate decarboxylase; GHMP kinase family, lyase; 1.85A {Staphylococcus epidermidis} PDB: 3qt6_A* 3qt7_A* 4dpt_A* 4du7_A* 4dpu_A* 3qt8_A* 4dpx_A 4dpy_A* 4du8_A* 4dpw_A* 2hk2_A 2hk3_A
Probab=99.88 E-value=2.5e-21 Score=185.66 Aligned_cols=222 Identities=14% Similarity=0.126 Sum_probs=153.7
Q ss_pred CcEEEEEEecCCCCCCCChHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhhhhhCCCCCchhHHHHHhhcCCeEEEEec
Q 018397 13 QLFNHINSLFFNLGSGLSSSTAFVCSSTVALMAAFGVEVPKKEIAQLTCECEQFIGTQSGGMDQAISIMAKSGFAELIDF 92 (356)
Q Consensus 13 ~g~~i~i~s~IP~~~GLGSSaAl~va~~~al~~l~~~~ls~~el~~la~~~E~~~g~~~G~~D~~~~~~Gg~~~~~~~d~ 92 (356)
.|+++.+.++||.++|||||||.++|++.+++++++.++++++++++|.++| .|...+++||+ ..+..
T Consensus 93 ~~~~i~~~~~iP~~~GLgSSaa~~~a~~~a~~~l~~~~l~~~el~~la~~~~---------g~~~~~~~GG~---~~~~~ 160 (332)
T 3qt5_A 93 LHARIESENYVPTAAGLASSASAYAALAAACNEALSLNLSDTDLSRLARRGS---------GSASRSIFGGF---AEWEK 160 (332)
T ss_dssp CEEEEEEEEESCGGGTCCCHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHC---------GGGGGGGSCSE---EEEEC
T ss_pred CCEEEEEecCCCCCCCcchHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhc---------CCchhhhcCCe---EEEec
Confidence 5899999999999999999999999999999999999999999999999986 14556789994 33332
Q ss_pred -CC-C--eeEEee---cCCCcEEEEEecCcchhhhhhcccchhhHHHHHHHHHHHHHHHhCCCchhhhhhhccchhhhhh
Q 018397 93 -NP-I--RTTDVQ---LPAGGTFVVAHSLAESLKAITAASNYNNRVVECRLTAIVLAIKLGMKPQEAISKVKTLSDVEGL 165 (356)
Q Consensus 93 -~~-~--~~~~~~---~p~~~~~ll~~s~~~~~~~~~~~~~~~~r~~e~~~a~~~l~~~~~~~~~~~~~~~~~Lr~v~~~ 165 (356)
.+ . ...+++ .+++++++++.+.....+..+ |. .++.
T Consensus 161 g~~~~~~~~~~l~~~~~~~~l~~vv~vp~~~~~~~ss-------~~--------~~~~---------------------- 203 (332)
T 3qt5_A 161 GHDDLTSYAHGINSNGWEKDLSMIFVVINNQSKKVSS-------RS--------GMSL---------------------- 203 (332)
T ss_dssp CSSTTTCEEEEECCTTGGGGEEEEEECCCCCCCC--C-------HH--------HHHH----------------------
T ss_pred CCCCccceeeecccccCCCCcEEEEEEEcCCCCCCch-------HH--------HHHH----------------------
Confidence 11 1 235554 335788888888753221111 10 0000
Q ss_pred hhhhhccCCCCCCcccccCCCCHHHHHHHhhhhhhhhhhcCCChhhHHhhhhhHHHHHHHhhHHhHHHHHHHHHHHHhcC
Q 018397 166 CVAFACKNGSSDPVFAVKEPYTALDIEKITEEKLTSIFANSSSSLDVLNAAKQYKLHQRAAHVYSEAKRVHAFKDTVSSN 245 (356)
Q Consensus 166 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~i~E~~rv~~~~~al~~~ 245 (356)
..+.+ . ....+..+ + ..++..++.||.++
T Consensus 204 ----------------------------~~~~s--~------------------~~~~~v~~-~--~~~~~~l~~Al~~~ 232 (332)
T 3qt5_A 204 ----------------------------TRDTS--R------------------FYQYWLDH-V--DEDLNEAKEAVKNQ 232 (332)
T ss_dssp ----------------------------HHHHC--T------------------THHHHHHH-H--HHHHHHHHHHHHHT
T ss_pred ----------------------------hhhcC--h------------------hHHHHHHH-H--HHHHHHHHHHHHcC
Confidence 00000 0 00011111 1 13667788999976
Q ss_pred CCchHHHHHHHHHHHHH----HHHhhhhcC---CCChHHHHHHHHHH---hCCCceeEEeccCCcceEEEEecCCcHHHH
Q 018397 246 LSEEDKLKKLGDLMNDS----HHSCSVLYE---CSCPELEELVNVCR---NNGALGARLTGAGWGGCVVALVKESIDSQF 315 (356)
Q Consensus 246 ~~~~~~~~~lg~lm~~s----h~~lr~~~~---vs~peld~lv~~a~---~~Ga~GaklsGaG~GG~vi~l~~~~~~~~~ 315 (356)
| ++.|+++|.++ |..++..+. ..+|+++.+++.++ +.|++|+.+||+| ||+++|++++.++++
T Consensus 233 D-----~~~l~~~~~~d~~~lh~~~~~~~p~~~yl~p~~~~i~~~~~~~~~~Ga~~a~~SGaG--Ptv~~l~~~~~a~~v 305 (332)
T 3qt5_A 233 D-----FQRLGEVIEANGLRMHATNLGAQPPFTYLVQESYDAMAIVEQCRKANLPCYFTMDAG--PNVKVLVEKKNKQAV 305 (332)
T ss_dssp C-----HHHHHHHHHHHHHHHHHHHHTSSSCCCSCCHHHHHHHHHHHHHHHTTCCEEEECCSS--SCEEEEEEHHHHHHH
T ss_pred C-----HHHHHHHHHHHHHHHHHHhcccCCCceeeChHHHHHHHHHHHHHhCCCcEEEEeCCC--CcEEEEECHHHHHHH
Confidence 4 99999999844 444443311 14799999999985 7899999999776 999999987677777
Q ss_pred HHHHHHHHHhcccCCCcccCCCCcceEEEe-ecCCceeecc
Q 018397 316 ILNLKEQFYQSRIDRGVINNNDLGLYVFAS-KPSSGAAKFK 355 (356)
Q Consensus 316 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~p~~Ga~v~~ 355 (356)
.+.|++.|. +..++++ +|+.|+++++
T Consensus 306 ~~~l~~~~~--------------~~~~~v~~~~g~G~~~~~ 332 (332)
T 3qt5_A 306 MEQFLKVFD--------------ESKIIASDIISSGVEIIK 332 (332)
T ss_dssp HHHHHTTSC--------------GGGEEEEEBCSSCCEECC
T ss_pred HHHHHHhCC--------------CceEEEeccccCCcEecC
Confidence 777755442 3468888 9999999864
No 21
>1uek_A 4-(cytidine 5'-diphospho)-2C-methyl-D-erythritol kinase; non-mevalonate pathway, GHMP superfamily; 1.70A {Thermus thermophilus} SCOP: d.14.1.5 d.58.26.5
Probab=99.83 E-value=2e-20 Score=174.57 Aligned_cols=89 Identities=15% Similarity=0.045 Sum_probs=76.6
Q ss_pred CcEEEEEEecCCCCCCCChHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhhhhhCCCCCchhHHHHHhhcCCeEEEEec
Q 018397 13 QLFNHINSLFFNLGSGLSSSTAFVCSSTVALMAAFGVEVPKKEIAQLTCECEQFIGTQSGGMDQAISIMAKSGFAELIDF 92 (356)
Q Consensus 13 ~g~~i~i~s~IP~~~GLGSSaAl~va~~~al~~l~~~~ls~~el~~la~~~E~~~g~~~G~~D~~~~~~Gg~~~~~~~d~ 92 (356)
+|+++.++++||.++|||||||.++|++.+++++++.++ +++++|.++| .|..++++||. .+...
T Consensus 75 ~g~~i~i~~~IP~g~GLGSSsa~a~a~l~al~~l~~~~l---~l~~la~~~g---------~dv~~~~~Gg~---~~~~g 139 (275)
T 1uek_A 75 GGVRILLEKRIPEGAGLGGGSSDAAQVLLALQALYPAEV---DLFALARTLG---------ADVPFFLLGRG---AEARG 139 (275)
T ss_dssp CEEEEEEECCSCSSSSSCHHHHHHHHHHHHHHHHSCSCC---CHHHHHHHHC---------TTHHHHHHCSE---EEEET
T ss_pred CCEEEEEecCCCCcCcccHHHHHHHHHHHHHHHHcCCCh---HHHHHHHHhC---------CChHHHhcCCe---EEEEc
Confidence 589999999999999999999999999999999999888 8999999887 39999999984 45554
Q ss_pred CCCeeEEeecCCCcEEEEEecCcch
Q 018397 93 NPIRTTDVQLPAGGTFVVAHSLAES 117 (356)
Q Consensus 93 ~~~~~~~~~~p~~~~~ll~~s~~~~ 117 (356)
++..+++++ ++++.+++++|+.+.
T Consensus 140 ~g~~~~~l~-~~~~~~vl~~p~~~~ 163 (275)
T 1uek_A 140 VGERLKPLA-LPPVPAVVFFPGLRV 163 (275)
T ss_dssp TTTEEEEEC-CCCEEEEEEECCCCC
T ss_pred cCceeEEcc-CCCcEEEEEeCCCCC
Confidence 555677777 668999999998744
No 22
>2v8p_A 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; nucleotide-binding, isoprene biosynthesis, transferase, ATP-binding, non-mevalonate; HET: CDP ADP; 2.1A {Aquifex aeolicus} PDB: 2v2v_A* 2v2q_A* 2v34_A* 2v2z_A* 2vf3_A*
Probab=99.82 E-value=3.2e-20 Score=172.90 Aligned_cols=92 Identities=12% Similarity=0.122 Sum_probs=79.4
Q ss_pred CcEEEEEEecCCCCCCCChHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhhhhhCCCCCchhHHHHHhhcCCeEEEEec
Q 018397 13 QLFNHINSLFFNLGSGLSSSTAFVCSSTVALMAAFGVEVPKKEIAQLTCECEQFIGTQSGGMDQAISIMAKSGFAELIDF 92 (356)
Q Consensus 13 ~g~~i~i~s~IP~~~GLGSSaAl~va~~~al~~l~~~~ls~~el~~la~~~E~~~g~~~G~~D~~~~~~Gg~~~~~~~d~ 92 (356)
+|+++.++++||.++|||||||.++|++.+++++++.++++++++++|.++| .|...+++||. .+...
T Consensus 80 ~g~~i~i~~~IP~g~GLGsSsa~a~a~l~al~~l~~~~l~~~el~~la~~~e---------~dv~~~~~gg~---~~~~g 147 (271)
T 2v8p_A 80 INYSIFIQKNIPPGAGLGGGSSNLAVVLKKVNELLGSPLSEEELRELVGSIS---------ADAPFFLLGKS---AIGRG 147 (271)
T ss_dssp CCEEEEEECCSCTTSSSCHHHHHHHHHHHHHHHHTTCCSCHHHHHHHHHHHC---------TTTGGGGTCSE---EEEET
T ss_pred CCeEEEEEeCCCCCCCCchHHHHHHHHHHHHHHhcCCCcCHHHHHHHHHHhC---------CCHHHHhcCCe---EEEEE
Confidence 6899999999999999999999999999999999999999999999999998 37788899983 44544
Q ss_pred CCCeeEEeecCCCcEEEEEecCcc
Q 018397 93 NPIRTTDVQLPAGGTFVVAHSLAE 116 (356)
Q Consensus 93 ~~~~~~~~~~p~~~~~ll~~s~~~ 116 (356)
++..++++++|.++.+++++|+.+
T Consensus 148 ~g~~~~~l~~~~~~~~vl~~p~~~ 171 (271)
T 2v8p_A 148 KGEVLEPVETEISGKITLVIPQVS 171 (271)
T ss_dssp TTTEEEECCCCCCSEEEEEECSSC
T ss_pred cCCEEEEccCCCCcEEEEEeCCCC
Confidence 555677777444899999999874
No 23
>1fi4_A Mevalonate 5-diphosphate decarboxylase; mixed alpha/beta structure, ATP binding, CHOL biosynthesis, structural genomics, PSI; 2.27A {Saccharomyces cerevisiae} SCOP: d.14.1.5 d.58.26.2
Probab=99.79 E-value=1.5e-17 Score=164.05 Aligned_cols=207 Identities=13% Similarity=0.119 Sum_probs=138.1
Q ss_pred CCcEEEEEEecCCCCCCCChHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhhhhhCCCCCchhHHHHHhhcCCeEEEEe
Q 018397 12 FQLFNHINSLFFNLGSGLSSSTAFVCSSTVALMAAFGVEVPKKEIAQLTCECEQFIGTQSGGMDQAISIMAKSGFAELID 91 (356)
Q Consensus 12 ~~g~~i~i~s~IP~~~GLGSSaAl~va~~~al~~l~~~~ls~~el~~la~~~E~~~g~~~G~~D~~~~~~Gg~~~~~~~d 91 (356)
..|++|.+.++||.++|||||||.++|++.|+++++++++++++|+++|.+++ | +...+++||+ ..++
T Consensus 121 ~~gv~I~i~~~IP~~aGLGSSAA~aaA~l~Aln~l~gl~Ls~~eLa~lA~~g~---G------s~~~sl~GG~---v~~~ 188 (416)
T 1fi4_A 121 QWKLHIVSENNFPTAAGLASSAAGFAALVSAIAKLYQLPQSTSEISRIARKGS---G------SACRSLFGGY---VAWE 188 (416)
T ss_dssp GSCEEEEEEECCCTTSCCCHHHHHHHHHHHHHHHHTTCCSCHHHHHHHHHHHH---G------GGGGGGSSSE---EEEE
T ss_pred CCcEEEEEecCCcCcCCccHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHhccC---C------chheEeeCCc---EEEe
Confidence 46899999999999999999999999999999999999999999999998875 1 3456799995 2333
Q ss_pred c-C-----CCeeEEeec---CCCcEEEEEecCcchhhhhhcccchhhHHHHHHHHHHHHHHHhCCCchhhhhhhccchhh
Q 018397 92 F-N-----PIRTTDVQL---PAGGTFVVAHSLAESLKAITAASNYNNRVVECRLTAIVLAIKLGMKPQEAISKVKTLSDV 162 (356)
Q Consensus 92 ~-~-----~~~~~~~~~---p~~~~~ll~~s~~~~~~~~~~~~~~~~r~~e~~~a~~~l~~~~~~~~~~~~~~~~~Lr~v 162 (356)
. . .....+++. ++++.++++.+.... +.......|+.+
T Consensus 189 ~G~~~~~~~~~~~~l~~~~~~p~l~~vvlv~~~~~-~~~sst~~~~~~-------------------------------- 235 (416)
T 1fi4_A 189 MGKAEDGHDSMAVQIADSSDWPQMKACVLVVSDIK-KDVSSTQGMQLT-------------------------------- 235 (416)
T ss_dssp CCSCTTCTTCEEEEEECGGGSTTEEEEEEEECCCS-CCCCHHHHHHHH--------------------------------
T ss_pred cCCcCCCCCceeEEecCccCCcccEEEEEEECCCC-CCcCCHHHHHHH--------------------------------
Confidence 2 1 122455543 236664444332100 110000001000
Q ss_pred hhhhhhhhccCCCCCCcccccCCCCHHHHHHHhhhhhhhhhhcCCChhhHHhhhhhHHHHHHHhhHHhHHHHHHHHHHHH
Q 018397 163 EGLCVAFACKNGSSDPVFAVKEPYTALDIEKITEEKLTSIFANSSSSLDVLNAAKQYKLHQRAAHVYSEAKRVHAFKDTV 242 (356)
Q Consensus 163 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~i~E~~rv~~~~~al 242 (356)
++. .. ....++.++. ..++..++.||
T Consensus 236 --------------------------------~~~--~~------------------~~~~~~~~i~--~~~~~~l~~AL 261 (416)
T 1fi4_A 236 --------------------------------VAT--SE------------------LFKERIEHVV--PKRFEVMRKAI 261 (416)
T ss_dssp --------------------------------HHH--CS------------------HHHHHHHTHH--HHHHHHHHHHH
T ss_pred --------------------------------hhc--CH------------------hHHHHHHHHH--HHHHHHHHHHH
Confidence 000 00 0011122211 24677788999
Q ss_pred hcCCCchHHHHHHHHHHHHHHHHhhhhcC-------CCChHHHHHHHHHHh----CC-CceeEEeccCCcceEEEEecCC
Q 018397 243 SSNLSEEDKLKKLGDLMNDSHHSCSVLYE-------CSCPELEELVNVCRN----NG-ALGARLTGAGWGGCVVALVKES 310 (356)
Q Consensus 243 ~~~~~~~~~~~~lg~lm~~sh~~lr~~~~-------vs~peld~lv~~a~~----~G-a~GaklsGaG~GG~vi~l~~~~ 310 (356)
.++| ++.||++|.++|..+...|. ...|....+++.+.+ .| +.++.+||+| +|+++|++++
T Consensus 262 ~~gD-----~~~~g~~~~~d~~~lh~~~~~~~p~~~~l~p~~~~i~~~~~~~r~~~Ga~~~a~~SGaG--Ptv~al~~~~ 334 (416)
T 1fi4_A 262 VEKD-----FATFAKETMMDSNSFHATCLDSFPPIFYMNDTSKRIISWCHTINQFYGETIVAYTFDAG--PNAVLYYLAE 334 (416)
T ss_dssp HTTC-----HHHHHHHHHHHHHHHHHHHHTSSSCCCCCCHHHHHHHHHHHHHHHHHTSCCEEEEECSS--SCEEEEEEGG
T ss_pred HcCC-----HHHHHHHHHHHHHHHHHHhhccCCceeeecHHHHHHHHHHHHHHHhcCCceEEEEecCC--CcEEEEECHH
Confidence 9875 99999999887776665332 245677888877644 38 7888999877 9999999877
Q ss_pred cHHHHHHHHHHHHH
Q 018397 311 IDSQFILNLKEQFY 324 (356)
Q Consensus 311 ~~~~~~~~l~~~~~ 324 (356)
.++++.+.|++.|.
T Consensus 335 ~~~~v~~~l~~~~~ 348 (416)
T 1fi4_A 335 NESKLFAFIYKLFG 348 (416)
T ss_dssp GHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhcc
Confidence 78889999987775
No 24
>3lto_A Mevalonate diphosphate decarboxylase; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.27A {Legionella pneumophila}
Probab=99.75 E-value=1.5e-16 Score=151.13 Aligned_cols=202 Identities=15% Similarity=0.072 Sum_probs=134.3
Q ss_pred CCcEEEEEEecCCCCCCCChHHHHHHHHH----HHHHHHhCCCC-CHHHHHHHHHHhhhhhCCCCCchhHHHHHhhcCCe
Q 018397 12 FQLFNHINSLFFNLGSGLSSSTAFVCSST----VALMAAFGVEV-PKKEIAQLTCECEQFIGTQSGGMDQAISIMAKSGF 86 (356)
Q Consensus 12 ~~g~~i~i~s~IP~~~GLGSSaAl~va~~----~al~~l~~~~l-s~~el~~la~~~E~~~g~~~G~~D~~~~~~Gg~~~ 86 (356)
..|++|.+.++||.++|||||||.++|++ .++++++++++ +++++.++|..++ | +...|+|||+
T Consensus 90 ~~gv~I~~~n~IP~aaGLgSSAA~~aA~~~~~~~aln~l~gl~l~s~~eL~~lA~~gs---G------saa~si~GG~-- 158 (323)
T 3lto_A 90 VGGFLIQSSNNFPHSSGLASSASSFAALTKCASIALSELTQKPLPSIDEQAQLSRLGS---G------SSCRSFYAPW-- 158 (323)
T ss_dssp CCCEEEEEEESSCTTTTCCCHHHHHHHHHHHHHHHHHHHHTCCCCCHHHHHHHHHTTC---G------GGGGGGSCSE--
T ss_pred CCCEEEEEEeCCCCccCcchhHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHhC---C------CcchhhhCCE--
Confidence 36899999999999999999999999999 99999999999 9999999997664 1 3345899994
Q ss_pred EEEEecCCCeeEEee-cCCCcEEEEEe-cCcchhhhhhcccchhhHHHHHHHHHHHHHHHhCCCchhhhhhhccchhhhh
Q 018397 87 AELIDFNPIRTTDVQ-LPAGGTFVVAH-SLAESLKAITAASNYNNRVVECRLTAIVLAIKLGMKPQEAISKVKTLSDVEG 164 (356)
Q Consensus 87 ~~~~d~~~~~~~~~~-~p~~~~~ll~~-s~~~~~~~~~~~~~~~~r~~e~~~a~~~l~~~~~~~~~~~~~~~~~Lr~v~~ 164 (356)
+.+.. ...+++. .++++.++++. +..++ ..++. .+.+. +
T Consensus 159 -v~~~~--g~~~~l~~~~~~l~~~v~vi~~~~~-~vsT~------------~~~~~------------------l----- 199 (323)
T 3lto_A 159 -ALWTG--DKVSAIDLPYKDLLHQVIVISSQEK-EIPSR------------VAHKL------------------V----- 199 (323)
T ss_dssp -EEEET--TEEEECCCSCCSCEEEEEECCCCTT-CCCHH------------HHHHH------------------G-----
T ss_pred -EEEec--CcEEEccCCCCCCeEEEEEECCCCC-CCCCH------------HHHhh------------------c-----
Confidence 33322 1334442 22456665444 33211 01110 00000 0
Q ss_pred hhhhhhccCCCCCCcccccCCCCHHHHHHHhhhhhhhhhhcCCChhhHHhhhhhHHHHHHHhhHHhHHHHHHHHHHHHhc
Q 018397 165 LCVAFACKNGSSDPVFAVKEPYTALDIEKITEEKLTSIFANSSSSLDVLNAAKQYKLHQRAAHVYSEAKRVHAFKDTVSS 244 (356)
Q Consensus 165 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~i~E~~rv~~~~~al~~ 244 (356)
+. ..++ -.+..+ ...++..++.||.+
T Consensus 200 -------------------------------~~--~~~~------------------~~~~~~---~~~~~~~l~~AL~~ 225 (323)
T 3lto_A 200 -------------------------------KT--SPFY------------------ETRSER---AEANLKLLLNAFEN 225 (323)
T ss_dssp -------------------------------GG--STTT------------------TTHHHH---HHHHHHHHHHHHHT
T ss_pred -------------------------------cc--ChhH------------------HHHHHH---hHHHHHHHHHHHHc
Confidence 00 0000 000000 12467778899998
Q ss_pred CCCchHHHHHHHHHHHHH----HHHhhhh--c-CCCChHHHHHHHHHHh----CCCceeEEeccCCcceEEEEecCCcHH
Q 018397 245 NLSEEDKLKKLGDLMNDS----HHSCSVL--Y-ECSCPELEELVNVCRN----NGALGARLTGAGWGGCVVALVKESIDS 313 (356)
Q Consensus 245 ~~~~~~~~~~lg~lm~~s----h~~lr~~--~-~vs~peld~lv~~a~~----~Ga~GaklsGaG~GG~vi~l~~~~~~~ 313 (356)
+| ++.|+++|..+ |..+++. | -...|+...+++.+.+ .|++|+.++||| +++++|++++..+
T Consensus 226 gD-----~~~l~~~~~~d~~~LHa~~~~~~P~~~~l~p~s~~i~~~v~~~r~~~G~~~~~tsgAG--Pnv~~l~~~~~~~ 298 (323)
T 3lto_A 226 KD-----WTSIYQICWHEFLDMHQLFKTCEKPFSYITDNTLHILSVIEKFWNEKGDGPVVTMDAG--PNVHLLYRSDQTD 298 (323)
T ss_dssp TC-----HHHHHHHHHHHHHHHHHHHHTSSSCCCSCCHHHHHHHHHHHHHHHHHSCCCEEECCSS--SCEEEEECGGGHH
T ss_pred CC-----HHHHHHHHHHHHHHHhHHHhccCCCceecCchHHHHHHHHHHHHHhCCCeEEEEECCC--CCeEEEEecccHH
Confidence 75 99999987644 4444442 2 1257887777777754 699999999999 8899999888899
Q ss_pred HHHHHHHHHHH
Q 018397 314 QFILNLKEQFY 324 (356)
Q Consensus 314 ~~~~~l~~~~~ 324 (356)
.+.+.|++.+.
T Consensus 299 ~v~~~l~~~~~ 309 (323)
T 3lto_A 299 LARQFKSDHLV 309 (323)
T ss_dssp HHHHHHHHHTT
T ss_pred HHHHHHHHHhH
Confidence 99999976653
No 25
>2ww4_A 4-diphosphocytidyl-2C-methyl-D-erythritol kinase; non-mevalonate pathway, isoprenoid biosynthesis, transferase; HET: ADP; 2.00A {Escherichia coli} PDB: 1oj4_A*
Probab=99.74 E-value=2.9e-18 Score=160.75 Aligned_cols=93 Identities=17% Similarity=0.134 Sum_probs=79.5
Q ss_pred CcEEEEEEecCCCCCCCChHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhhhhhCCCCCchhHHHHHhhcCCeEEEEec
Q 018397 13 QLFNHINSLFFNLGSGLSSSTAFVCSSTVALMAAFGVEVPKKEIAQLTCECEQFIGTQSGGMDQAISIMAKSGFAELIDF 92 (356)
Q Consensus 13 ~g~~i~i~s~IP~~~GLGSSaAl~va~~~al~~l~~~~ls~~el~~la~~~E~~~g~~~G~~D~~~~~~Gg~~~~~~~d~ 92 (356)
+|+++.++++||.++|||||||.++|++.+++++++.++++++++++|.++| .|..++++||. .+...
T Consensus 88 ~g~~i~i~~~IP~g~GLGsSsa~~~a~l~al~~l~~~~l~~~~l~~la~~~e---------~dv~~~~~gg~---~~~~g 155 (283)
T 2ww4_A 88 SGANISIDKRLPMGGGLGGGSSNAATVLVALNHLWQCGLSMDELAEMGLTLG---------ADVPVFVRGHA---AFAEG 155 (283)
T ss_dssp CEEEEEEECCCC-CTTSCHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHTTC---------TTHHHHHHTBC---EEEET
T ss_pred CceEEEEEeCCCCCCCccHHHHHHHHHHHHHHHhcCCCcCHHHHHHHHHHhC---------CCHHHhhcCCe---EEEEe
Confidence 6899999999999999999999999999999999999999999999999988 38889999994 34544
Q ss_pred CCCeeEEeecCCCcEEEEEecCcchh
Q 018397 93 NPIRTTDVQLPAGGTFVVAHSLAESL 118 (356)
Q Consensus 93 ~~~~~~~~~~p~~~~~ll~~s~~~~~ 118 (356)
.+..++++++| ++.+++++|+.+.+
T Consensus 156 ~g~~~~~l~~~-~~~~vl~~p~~~~s 180 (283)
T 2ww4_A 156 VGEILTPVDPP-EKWYLVAHPGVSIP 180 (283)
T ss_dssp TTTEEEECCCC-CCEEEEECCSCCCC
T ss_pred cCccceEcCCC-CcEEEEEeCCCCCc
Confidence 55566777766 78999999987543
No 26
>2hke_A Diphosphomevalonate decarboxylase, putative; mevalonate diphosphate decarboxylase, lyase; 1.80A {Trypanosoma brucei}
Probab=99.74 E-value=3.9e-16 Score=152.13 Aligned_cols=204 Identities=12% Similarity=0.096 Sum_probs=131.4
Q ss_pred CCcEEEEEEecCCCCCCCChHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhhhhhCCCCCchhHHHHHhhcCCeEEEEe
Q 018397 12 FQLFNHINSLFFNLGSGLSSSTAFVCSSTVALMAAFGVEVPKKEIAQLTCECEQFIGTQSGGMDQAISIMAKSGFAELID 91 (356)
Q Consensus 12 ~~g~~i~i~s~IP~~~GLGSSaAl~va~~~al~~l~~~~ls~~el~~la~~~E~~~g~~~G~~D~~~~~~Gg~~~~~~~d 91 (356)
..|++|.++++||.++|||||||.++|++.|++++++.+ ++++++|.+++ .|...|+|||+ ..+.
T Consensus 95 ~~~v~I~~~~~IP~aaGLGSSAA~aaA~l~Aln~l~gl~---~eL~~lA~~g~---------Gsva~s~~GG~---v~~~ 159 (380)
T 2hke_A 95 NKKVNIVSENNFPTAAGMASSASGYCAMSAALIRAFKST---TNVSMLARLGS---------GSACRSAFGGF---VIWN 159 (380)
T ss_dssp TCEEEEEEEECSCTTSCCCHHHHHHHHHHHHHHHHHTCS---SCHHHHHHHHC---------GGGGGGGSSSE---EEEE
T ss_pred CCCEEEEEeccCCCccCcchHHHHHHHHHHHHHHHcCCH---HHHHHHHhhcC---------cceeeehhCCe---EEEe
Confidence 468999999999999999999999999999999999976 88999998765 14566899995 2333
Q ss_pred cC------CCeeEEeecC---CCcEEEEEecCcchhhhhhcccchhhHHHHHHHHHHHHHHHhCCCchhhhhhhccchhh
Q 018397 92 FN------PIRTTDVQLP---AGGTFVVAHSLAESLKAITAASNYNNRVVECRLTAIVLAIKLGMKPQEAISKVKTLSDV 162 (356)
Q Consensus 92 ~~------~~~~~~~~~p---~~~~~ll~~s~~~~~~~~~~~~~~~~r~~e~~~a~~~l~~~~~~~~~~~~~~~~~Lr~v 162 (356)
.. .....+++.+ +++.++++.+..+.....+ + .+.+ +++...
T Consensus 160 ~g~~~~~~~~~~~~l~~~~~~p~l~~~vlv~~~~~~~~ss-------t-~~~r---~~~~~~------------------ 210 (380)
T 2hke_A 160 KGEKPDGSDCVATQFVDETHWPEIQVMCAVLKGAQKDVSS-------T-KGMQ---QSLKTS------------------ 210 (380)
T ss_dssp CCSCTTSTTCEEEEEECTTSCTTEEEEEEECCCCSCCCCH-------H-HHHH---HHHHHC------------------
T ss_pred cCCCCCCCcceEEeccCcccCCcceEEEEEecCCCCCCCC-------H-HHHH---HHHhcC------------------
Confidence 21 1234566542 3555444432211000000 0 0000 000000
Q ss_pred hhhhhhhhccCCCCCCcccccCCCCHHHHHHHhhhhhhhhhhcCCChhhHHhhhhhHHHHHHHhhHHhHHHHHHHHHHHH
Q 018397 163 EGLCVAFACKNGSSDPVFAVKEPYTALDIEKITEEKLTSIFANSSSSLDVLNAAKQYKLHQRAAHVYSEAKRVHAFKDTV 242 (356)
Q Consensus 163 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~i~E~~rv~~~~~al 242 (356)
.. ...+..++ -..++..++.||
T Consensus 211 --------------------------------------~~------------------~~~~~~~~--~~~~~~~l~~Al 232 (380)
T 2hke_A 211 --------------------------------------PL------------------MKKRISET--VPERMKIASRAI 232 (380)
T ss_dssp --------------------------------------TT------------------HHHHHHTH--HHHHHHHHHHHH
T ss_pred --------------------------------------hh------------------HHHHHHHH--HHHHHHHHHHHH
Confidence 00 00001110 124566788999
Q ss_pred hcCCCchHHHHHHHHHHHHHHHHh----hhh--c-CCCChHHHHHHHHHHhC----C-CceeEEeccCCcceEEEEecCC
Q 018397 243 SSNLSEEDKLKKLGDLMNDSHHSC----SVL--Y-ECSCPELEELVNVCRNN----G-ALGARLTGAGWGGCVVALVKES 310 (356)
Q Consensus 243 ~~~~~~~~~~~~lg~lm~~sh~~l----r~~--~-~vs~peld~lv~~a~~~----G-a~GaklsGaG~GG~vi~l~~~~ 310 (356)
.++| ++.||++|.+++..+ ++. | ....|....+++.+.+. | +.++.+||+| +++++|++++
T Consensus 233 ~~~D-----~~~lg~~~~~d~~~lh~~~~~~~p~~~~l~p~~~~i~~~~~~~~~~~Ga~~~a~~SGaG--Ptv~~l~~~~ 305 (380)
T 2hke_A 233 KARD-----FATFAEIAMLESDDLQEICATTEPKITYATEDSYAMIRLVKAYNAKKGRTALAYTFDAG--ANCFLFVLKE 305 (380)
T ss_dssp HHTC-----HHHHHHHHHHHHHHHHHHHHTSSSCCCCCCHHHHHHHHHHHHHHHHHTSCCEEEECCSS--SCEEEEEEGG
T ss_pred HcCC-----HHHHHHHHHHHHHHHHHhhhccCCCeeEECHHHHHHHHHHHHHHHhcCCcceEEEECCC--CcEEEEECHH
Confidence 8764 999999996544333 332 2 23578888888887654 8 8889999776 9999999877
Q ss_pred cHHHHHHHHHHHHH
Q 018397 311 IDSQFILNLKEQFY 324 (356)
Q Consensus 311 ~~~~~~~~l~~~~~ 324 (356)
.++++.+.|++.|.
T Consensus 306 ~~~~v~~~l~~~~~ 319 (380)
T 2hke_A 306 DLPEAVAMLMEHFP 319 (380)
T ss_dssp GHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHhcc
Confidence 78889999977764
No 27
>3f0n_A Mevalonate pyrophosphate decarboxylase; cholesterol biosynthesis, lipid synthesis, lyase, steroid biosynthesis, sterol biosynthesis; 1.90A {Mus musculus} PDB: 3d4j_A
Probab=99.63 E-value=1.2e-14 Score=141.46 Aligned_cols=204 Identities=15% Similarity=0.158 Sum_probs=135.0
Q ss_pred CcEEEEEEecCCCCCCCChHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhhhhhCCCCCchhHHHHHhhcCCeEEEEec
Q 018397 13 QLFNHINSLFFNLGSGLSSSTAFVCSSTVALMAAFGVEVPKKEIAQLTCECEQFIGTQSGGMDQAISIMAKSGFAELIDF 92 (356)
Q Consensus 13 ~g~~i~i~s~IP~~~GLGSSaAl~va~~~al~~l~~~~ls~~el~~la~~~E~~~g~~~G~~D~~~~~~Gg~~~~~~~d~ 92 (356)
.+++|.+.++||.++|||||||.++|++.|+++++++ ++++.++|..++ | +...|+|||+ +.+..
T Consensus 122 ~~~~I~~~~~iP~aaGLgSSaA~~aA~~~a~n~l~~l---~~el~~lA~~~s---G------s~~~s~~GG~---v~w~~ 186 (414)
T 3f0n_A 122 YKVHVASVNNFPTAAGLASSAAGYACLAYTLAQVYGV---EGDLSEVARRGS---G------SACRSLYGGF---VEWQM 186 (414)
T ss_dssp SCEEEEEEECCCGGGCCCHHHHHHHHHHHHHHHHHTC---CSCCHHHHHHHC---G------GGGGGGSSSE---EEECC
T ss_pred CcEEEEEEeCCCCCcCcchhHHHHHHHHHHHHHHhCC---hHHHHHHHHHhC---C------CcchHhhCCE---EEEEe
Confidence 4899999999999999999999999999999999997 468888887765 2 3355899994 34321
Q ss_pred C------CCeeEEeecC---CCcEEEEEecCcchhhhhhcccchhhHHHHHHHHHHHHHHHhCCCchhhhhhhccchhhh
Q 018397 93 N------PIRTTDVQLP---AGGTFVVAHSLAESLKAITAASNYNNRVVECRLTAIVLAIKLGMKPQEAISKVKTLSDVE 163 (356)
Q Consensus 93 ~------~~~~~~~~~p---~~~~~ll~~s~~~~~~~~~~~~~~~~r~~e~~~a~~~l~~~~~~~~~~~~~~~~~Lr~v~ 163 (356)
. .....+++.+ +++.++++.+.....+.+ + | .
T Consensus 187 ~~~~d~~ds~a~~i~~~~~wp~L~ivvlv~~~~~K~vs---S----T-~------------------------------- 227 (414)
T 3f0n_A 187 GEQADGKDSIARQIAPEWHWPQLRILILVVSADKKQTG---S----T-V------------------------------- 227 (414)
T ss_dssp CSCTTCTTCCEEEEECTTSCTTEEEEEEEESCCC-CCC---H----H-H-------------------------------
T ss_pred ccCCCCCceEEEEcccccCCCCceEEEEEeCccccCCC---c----h-H-------------------------------
Confidence 1 1223455432 367777776432111110 0 0 0
Q ss_pred hhhhhhhccCCCCCCcccccCCCCHHHHHHHhhhhhhhhhhcCCChhhHHhhhhhHHHHHHHhhHHhHHHHHHHHHHHHh
Q 018397 164 GLCVAFACKNGSSDPVFAVKEPYTALDIEKITEEKLTSIFANSSSSLDVLNAAKQYKLHQRAAHVYSEAKRVHAFKDTVS 243 (356)
Q Consensus 164 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~i~E~~rv~~~~~al~ 243 (356)
..+..++.. .+ ...+..++ -..|+..++.||.
T Consensus 228 --------------------------~mr~~l~ts--~~------------------~~~~v~~~--~~~~~~~l~~AL~ 259 (414)
T 3f0n_A 228 --------------------------GMQTSVETS--TL------------------LKFRAESV--VPERMKEMTRCIQ 259 (414)
T ss_dssp --------------------------HHHHHHHHC--HH------------------HHHHHHHT--HHHHHHHHHHHHH
T ss_pred --------------------------HHHhhcccC--cc------------------HHHHHHHH--HHHHHHHHHHHHH
Confidence 000000000 00 01111110 1257778899999
Q ss_pred cCCCchHHHHHHHHHHHH----HHHHhhhh--c-CCCChHHHHHHHHHHhC-----CCceeEEeccCCcceEEEEecCCc
Q 018397 244 SNLSEEDKLKKLGDLMND----SHHSCSVL--Y-ECSCPELEELVNVCRNN-----GALGARLTGAGWGGCVVALVKESI 311 (356)
Q Consensus 244 ~~~~~~~~~~~lg~lm~~----sh~~lr~~--~-~vs~peld~lv~~a~~~-----Ga~GaklsGaG~GG~vi~l~~~~~ 311 (356)
++| ++.||+++.. -|..+++- | -..+|+...+++.+.+. |++++.++||| +++++|+++++
T Consensus 260 ~gD-----~~~~g~l~e~Ds~~lHa~~~~s~P~~~yl~p~s~~ii~~v~~~r~~~~g~~~~~tsdAG--Pnv~vl~~~~~ 332 (414)
T 3f0n_A 260 EQD-----FQGFAQLTMKDSNQFHATCLDTFPPISYLNDTSRRIIQLVHRFNTHHGQTKVAYTFDAG--PNAVIFTLEDT 332 (414)
T ss_dssp TTC-----HHHHHHHHHHHHHHHHHHHHTSSSCCCCCCHHHHHHHHHHHHHHHHHTSCCEEEECCSS--SCEEEEEEHHH
T ss_pred cCC-----HHHHHHHHHHHHHHHHHHHhccCCCeeeeCccHHHHHHHHHHHHHhcCCceEEEEECCC--CCEEEEEeccc
Confidence 875 9999998763 36655552 1 22578888888887763 89999999999 88999998888
Q ss_pred HHHHHHHHHHHHHh
Q 018397 312 DSQFILNLKEQFYQ 325 (356)
Q Consensus 312 ~~~~~~~l~~~~~~ 325 (356)
.+.+.+.|++.|..
T Consensus 333 ~~~v~~~l~~~f~~ 346 (414)
T 3f0n_A 333 VAEFVAAVRHSFPP 346 (414)
T ss_dssp HHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHhcCC
Confidence 99999999766654
No 28
>3m05_A Uncharacterized protein PEPE_1480; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics; 3.15A {Pediococcus pentosaceus}
Probab=79.94 E-value=3 Score=32.81 Aligned_cols=53 Identities=9% Similarity=0.021 Sum_probs=40.2
Q ss_pred hHHHHHHHHHHhCCCceeEEeccCCcc-----eEEEEecCCcHHHHHHHHHHHHHhcc
Q 018397 275 PELEELVNVCRNNGALGARLTGAGWGG-----CVVALVKESIDSQFILNLKEQFYQSR 327 (356)
Q Consensus 275 peld~lv~~a~~~Ga~GaklsGaG~GG-----~vi~l~~~~~~~~~~~~l~~~~~~~~ 327 (356)
..+|.+.+...+.|..|.+++-.|++| .+...++++.++++++.|.+.-+.+.
T Consensus 16 ~kld~V~~AL~~~G~~~t~v~~~gGf~r~g~~~leivV~De~Vd~vi~~I~~~a~TR~ 73 (114)
T 3m05_A 16 KDANYLSDQFIDQNVRATKLSTTGGFLQSGNTTFMIGIEEERVPEVLEIIKKASHTRE 73 (114)
T ss_dssp HHHHHHHHHHHHTTCCEEEEEEEETTTTEEEEEEEEEEEGGGHHHHHHHHHHHHCCEE
T ss_pred HHHHHHHHHHHHCCCCEEEEEEeccccccCCEEEEEEEcHHHHHHHHHHHHHHcCCce
Confidence 447888888888999998888766543 34555667789999999988766544
No 29
>2eg2_A Nitrogen regulatory protein P-II; structural genomics, NPPSFA, Na project on protein structural and functional analyses; HET: ATP; 1.72A {Aquifex aeolicus} PDB: 2eg1_A* 2z0g_A 2pii_A 1pil_A
Probab=46.92 E-value=63 Score=24.57 Aligned_cols=52 Identities=17% Similarity=0.194 Sum_probs=35.6
Q ss_pred ChHHHHHHHHHHhCCCceeEEe---ccCC--cc-----------------eEEEEecCCcHHHHHHHHHHHHHh
Q 018397 274 CPELEELVNVCRNNGALGARLT---GAGW--GG-----------------CVVALVKESIDSQFILNLKEQFYQ 325 (356)
Q Consensus 274 ~peld~lv~~a~~~Ga~Gakls---GaG~--GG-----------------~vi~l~~~~~~~~~~~~l~~~~~~ 325 (356)
...++.+.+.+.+.|+.|..++ |-|- |. -+..+++++.++.+++.|.+..+.
T Consensus 10 ~~~~~~v~~aL~~~G~~g~Tv~~v~G~G~~~~~~~~~~G~~~~~~~~~k~~ieivv~d~~v~~vv~~I~~~~~t 83 (112)
T 2eg2_A 10 PFKLDEVKDALVEIGIGGMTVTEVKGFGQQKGHTEIYRGTEYVIDFLPKVKIEVVVRDEDVEKVVETIVKTAQT 83 (112)
T ss_dssp GGGHHHHHHHHHHTTCCCCEEEEEEEC-----------------CCEEEEEEEEEECGGGHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHCCCCeEEEEEeEeecccCCCceeeeccccccccccEEEEEEEEcHHHHHHHHHHHHHHhcC
Confidence 3457888888888887776443 2221 11 366777778899999999887754
No 30
>1vfj_A Nitrogen regulatory protein P-II; structural genomics, signal transducing protein, riken structural genomics/proteomics initiative, RSGI; 1.70A {Thermus thermophilus} SCOP: d.58.5.1 PDB: 1ufl_A 1v3s_A* 1v9o_A* 1v3r_A
Probab=45.57 E-value=54 Score=25.14 Aligned_cols=52 Identities=15% Similarity=0.083 Sum_probs=37.4
Q ss_pred ChHHHHHHHHHHhCCCceeEE---eccCC--cc-----------------eEEEEecCCcHHHHHHHHHHHHHh
Q 018397 274 CPELEELVNVCRNNGALGARL---TGAGW--GG-----------------CVVALVKESIDSQFILNLKEQFYQ 325 (356)
Q Consensus 274 ~peld~lv~~a~~~Ga~Gakl---sGaG~--GG-----------------~vi~l~~~~~~~~~~~~l~~~~~~ 325 (356)
...++.+.+.+.+.|+.|..+ .|-|- |. .+..+++++.++.+++.|.+..+.
T Consensus 10 ~~~~~~V~~aL~~~G~~g~Tv~~v~G~G~~~~~~~~~~G~~~~~~~~~k~~ieivv~de~v~~vv~~I~~~~~t 83 (116)
T 1vfj_A 10 PEKLNEVLKALFQAEVRGLTLSRVQGHGGETERVETYRGTTVKMELHEKVRLEIGVSEPFVKPTVEAILKAART 83 (116)
T ss_dssp GGGHHHHHHHHHHTTCCCCEEEEEEEECTTCCCHHHHTTSCCSTTCEEEEEEEEEECGGGHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHhCCCCeEEEEeeEeEcCccCCccceeceeeeeccCceEEEEEEEcHHHHHHHHHHHHHHhcC
Confidence 345788888888888777643 33332 12 588888888999999999887753
No 31
>3bzq_A Nitrogen regulatory protein P-II; GLNB, GLNK, signal transdu protein, nucleotide-binding, transcription; 1.40A {Mycobacterium tuberculosis H37RV} PDB: 3lf0_A*
Probab=40.28 E-value=97 Score=23.52 Aligned_cols=52 Identities=19% Similarity=0.296 Sum_probs=35.9
Q ss_pred ChHHHHHHHHHHhCCCceeEE---eccCC-cc------------------eEEEEecCCcHHHHHHHHHHHHHh
Q 018397 274 CPELEELVNVCRNNGALGARL---TGAGW-GG------------------CVVALVKESIDSQFILNLKEQFYQ 325 (356)
Q Consensus 274 ~peld~lv~~a~~~Ga~Gakl---sGaG~-GG------------------~vi~l~~~~~~~~~~~~l~~~~~~ 325 (356)
...++.+.+.+.+.|+.|..+ .|-|- .| -+..+++++.++.+++.|.+..+.
T Consensus 12 ~~~~~~v~~aL~~~G~~g~Tv~~v~G~G~~~g~~~~~~g~~~~~~~~~k~~ieivv~de~v~~vv~~I~~~~~t 85 (114)
T 3bzq_A 12 PFTLDDVKTSLEDAGVLGMTVSEIQGYGRQKGHTEVYRGAEYSVDFVPKVRIEVVVDDSIVDKVVDSIVRAART 85 (114)
T ss_dssp GGGHHHHHHHHHHTTCCCCEEEEEEEECC---------------CEEEEEEEEEEEETTTHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHCCCCeEEEEeeEEeccccCcccceeccccccccccEEEEEEEECHHHHHHHHHHHHHHhcC
Confidence 345788888888888766643 23332 12 367777888999999999887754
No 32
>2j9c_A GLNK1, hypothetical nitrogen regulatory PII-like protein MJ0059; EM single particle, nitrogen metabolism, signalling, transcription; HET: ATP; 1.30A {Methanococcus jannaschii} PDB: 2j9d_A* 2j9e_A* 2j9d_E*
Probab=40.03 E-value=63 Score=24.98 Aligned_cols=52 Identities=23% Similarity=0.227 Sum_probs=37.1
Q ss_pred ChHHHHHHHHHHhCCCceeEEe---ccCC--cce-----------------EEEEecCCcHHHHHHHHHHHHHh
Q 018397 274 CPELEELVNVCRNNGALGARLT---GAGW--GGC-----------------VVALVKESIDSQFILNLKEQFYQ 325 (356)
Q Consensus 274 ~peld~lv~~a~~~Ga~Gakls---GaG~--GG~-----------------vi~l~~~~~~~~~~~~l~~~~~~ 325 (356)
...++.+.+.+.+.|+.|..++ |-|- |-+ +..+++++.++.+++.|.+..+.
T Consensus 12 ~~~~~~v~~aL~~~G~~g~Tv~~v~G~G~~~g~~~~~~G~~~~~~~~pK~~ieivv~de~v~~vv~~I~~~~~t 85 (119)
T 2j9c_A 12 PEKLEIVKKALSDAGYVGMTVSEVKGRGVQGGIVERYRGREYIVDLIPKVKIELVVKEEDVDNVIDIICENART 85 (119)
T ss_dssp GGGHHHHHHHHHHTTCCCEEEEEEEEECCSSSSCCEETTEECSSSCEEEEEEEEEEEGGGHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHCCCCeEEEEeeEeecccCCccceeeccccccccCcEEEEEEEEcHHHHHHHHHHHHHHhcC
Confidence 3458889999988888776443 3331 111 67778888999999999887754
No 33
>2gw8_A PII signal transduction protein; transcriptional regulation, neisse structural genomics, oxford protein production facility; 1.85A {Neisseria meningitidis}
Probab=36.34 E-value=1e+02 Score=23.48 Aligned_cols=52 Identities=15% Similarity=0.164 Sum_probs=35.3
Q ss_pred ChHHHHHHHHHHhCCCceeEEe---ccCC--cc-----------------eEEEEecCCcHHHHHHHHHHHHHh
Q 018397 274 CPELEELVNVCRNNGALGARLT---GAGW--GG-----------------CVVALVKESIDSQFILNLKEQFYQ 325 (356)
Q Consensus 274 ~peld~lv~~a~~~Ga~Gakls---GaG~--GG-----------------~vi~l~~~~~~~~~~~~l~~~~~~ 325 (356)
...++.+.+.+.+.|+.|..++ |-|- |. -+..+++++.++.+++.|.+..+.
T Consensus 12 ~~~~~~v~~aL~~~G~~g~Tv~~v~G~G~~~~~~~~~~g~~~~~~~~~K~~ieivv~d~~v~~vv~~I~~~~~t 85 (114)
T 2gw8_A 12 PFKLDDVREALTEIGITGMTVSEVKGFGRQKGHTEIYRGAEYAVDFLPKIKIELVLADDAVERAIDVIVEVARS 85 (114)
T ss_dssp GGGHHHHHHHHHHTTCCCCEEEEEEEECC--------------CCEEEEEEEEEEEEGGGHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHCCCCeEEEEeeEeecccCCCccceecccccccccceEEEEEEEcHHHHHHHHHHHHHHhCC
Confidence 3457888888888887776443 3232 11 445566777899999999887754
No 34
>1hwu_A PII protein; herbaspirillum seropedicae PII, beta-alpha-beta motif, signal transduction protein, signaling protein; 2.10A {Herbaspirillum seropedicae} SCOP: d.58.5.1
Probab=36.28 E-value=1.1e+02 Score=23.13 Aligned_cols=52 Identities=19% Similarity=0.225 Sum_probs=35.2
Q ss_pred ChHHHHHHHHHHhCCCceeEEe---ccCC-cc------------------eEEEEecCCcHHHHHHHHHHHHHh
Q 018397 274 CPELEELVNVCRNNGALGARLT---GAGW-GG------------------CVVALVKESIDSQFILNLKEQFYQ 325 (356)
Q Consensus 274 ~peld~lv~~a~~~Ga~Gakls---GaG~-GG------------------~vi~l~~~~~~~~~~~~l~~~~~~ 325 (356)
...++.+.+.+.+.|+.|..++ |-|- +| -+..+++++.++.+++.|.+..+.
T Consensus 10 ~~~~~~v~~aL~~~G~~g~Tv~~v~G~G~~~~~~~~~~g~~~~~~~~~k~~ieivv~d~~v~~vv~~I~~~~~t 83 (112)
T 1hwu_A 10 PFKLDEVRESLAEVGVTGLTVTEVKGFGRQKGHTELYRGAEYVVDFLPKVKIEVVVDDKVVEQAVDAIIKAART 83 (112)
T ss_dssp GGGHHHHHHHHHHTTCCCCEEEEEEEEC-------------CCCCEEEEEEEEEEECGGGHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHCCCCeEEEEeeEeEcCccCCccccccccccccccceEEEEEEEcHHHHHHHHHHHHHHhcC
Confidence 3457888888888888776543 3332 12 445556667899999999887754
No 35
>2o66_A PII protein; regulation of nitrogen and carbon metabolism, biosynthetic protein; HET: FLC; 1.90A {Arabidopsis thaliana} PDB: 2o67_A 2rd5_C*
Probab=35.22 E-value=95 Score=24.71 Aligned_cols=52 Identities=17% Similarity=0.142 Sum_probs=36.3
Q ss_pred ChHHHHHHHHHHhCCCceeEE---eccCCc-c-------------------eEEEEecCCcHHHHHHHHHHHHHh
Q 018397 274 CPELEELVNVCRNNGALGARL---TGAGWG-G-------------------CVVALVKESIDSQFILNLKEQFYQ 325 (356)
Q Consensus 274 ~peld~lv~~a~~~Ga~Gakl---sGaG~G-G-------------------~vi~l~~~~~~~~~~~~l~~~~~~ 325 (356)
...++.+.+.+.+.|+.|..+ .|-|-. | -+..+++++.++.+++.|.+..+.
T Consensus 22 ~~k~~~V~~AL~~~G~~G~Tv~~v~G~G~q~g~~~~~rG~~~~~~~~~pK~~ieivV~de~ve~Vv~~I~~~~~t 96 (135)
T 2o66_A 22 PWRIQQVSSALLKIGIRGVTVSDVRGFGAQGGSTERHGGSEFSEDKFVAKVKMEIVVKKDQVESVINTIIEGART 96 (135)
T ss_dssp GGGHHHHHHHHHHTTCCCCEEEEEEECC---------------CCCCEEEEEEEEEEEGGGHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHCCCceEEEEeeEeEeccCCCceeEcceeeeccccCceEEEEEEEcHHHHHHHHHHHHHHhCC
Confidence 345788888888888877644 333321 1 366777778999999999888764
No 36
>1o51_A Hypothetical protein TM0021; ferredoxin-like fold, structural genomics, joint center for structural genomics, JCSG; HET: ADP; 2.50A {Thermotoga maritima} SCOP: d.58.5.4
Probab=33.53 E-value=47 Score=25.79 Aligned_cols=49 Identities=24% Similarity=0.313 Sum_probs=31.5
Q ss_pred ChHHHHHHHHHHhCCCceeEE----eccCCcc---------------eEEEEecC-CcHHHHHHHHHHH
Q 018397 274 CPELEELVNVCRNNGALGARL----TGAGWGG---------------CVVALVKE-SIDSQFILNLKEQ 322 (356)
Q Consensus 274 ~peld~lv~~a~~~Ga~Gakl----sGaG~GG---------------~vi~l~~~-~~~~~~~~~l~~~ 322 (356)
-|-.++|++.+++.|+-|+-+ .|-|..| -++-++++ ++.+.+.+.|.+-
T Consensus 29 ~pL~~~Iv~~~~~~GiaGaTV~rgi~GfG~~g~ih~~~~l~ls~dlPV~Ie~Vd~~eki~~~l~~l~~~ 97 (114)
T 1o51_A 29 KPLFEYLVKRAYELGMKGVTVYRGIMGFGHKRHMHRSDFFSLSPDLPIVLEIVDEEERINLFLKEIDNI 97 (114)
T ss_dssp EEHHHHHHHHHHHTTCSCCEEEECSCCCCC-------------CCCEEEEEEEECHHHHHHHHHHHHTC
T ss_pred eEHHHHHHHHHHHCCCCeEEEEcCcEEECCCCCEEccceeecCCCCCEEEEEEcCHHHHHHHHHHHHHH
Confidence 477899999999999888865 3444333 24444433 5677777776443
No 37
>2ns1_B Nitrogen regulatory protein P-II 2; protein-protein complex, membrane protein, ammonia, channel, inhibitor, signal protein, ADP, BOG; HET: BOG ADP; 1.96A {Escherichia coli} SCOP: d.58.5.1 PDB: 1gnk_A 2nuu_G* 2gnk_A*
Probab=32.96 E-value=1.4e+02 Score=22.78 Aligned_cols=52 Identities=15% Similarity=0.159 Sum_probs=36.0
Q ss_pred ChHHHHHHHHHHhCCCceeE---EeccCCcc-------------------eEEEEecCCcHHHHHHHHHHHHHh
Q 018397 274 CPELEELVNVCRNNGALGAR---LTGAGWGG-------------------CVVALVKESIDSQFILNLKEQFYQ 325 (356)
Q Consensus 274 ~peld~lv~~a~~~Ga~Gak---lsGaG~GG-------------------~vi~l~~~~~~~~~~~~l~~~~~~ 325 (356)
...++.+.+.+.+.|+.|.. ..|-|--+ -+..+++++.++.+++.|.+..+.
T Consensus 14 ~~~~~~v~~AL~~~G~~g~Tv~~v~G~G~~~~~~~~~~G~~~~~~~~~k~~ieivv~de~v~~vv~~I~~~~~t 87 (116)
T 2ns1_B 14 PFKLEDVREALSSIGIQGLTVTEVKGFGRQKGHAELYRGAEFSVNFLPKVKIDVAIADDQLDEVIDIVSKAAYT 87 (116)
T ss_dssp GGGHHHHHHHHHHTTCCCCEEEEEEECSSSCCCCEEETTEEECCCCEEEEEEEEEEEGGGHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHCCCCeEEEEeeEeEcCcCCCccceecceeecccccEEEEEEEEcHHHHHHHHHHHHHHhcC
Confidence 34578888888888776663 33444211 455666778899999999888764
No 38
>3t9z_A GLNK3, nitrogen regulatory protein P-II (GLNB-3); PII-family, AMT3, signaling protein; HET: FLC; 1.82A {Archaeoglobus fulgidus} SCOP: d.58.5.0 PDB: 3ta0_A* 3ta1_A* 3ta2_A* 3o8w_A
Probab=29.51 E-value=1.5e+02 Score=22.97 Aligned_cols=50 Identities=20% Similarity=0.243 Sum_probs=34.4
Q ss_pred hHHHHHHHHHHhCCCceeEEe---ccCC--cc-----------------eEEEEecCCcHHHHHHHHHHHHH
Q 018397 275 PELEELVNVCRNNGALGARLT---GAGW--GG-----------------CVVALVKESIDSQFILNLKEQFY 324 (356)
Q Consensus 275 peld~lv~~a~~~Ga~Gakls---GaG~--GG-----------------~vi~l~~~~~~~~~~~~l~~~~~ 324 (356)
..++.+.+.+.+.|+.|..++ |-|- |. .+..+|+++.++.+++.|.+.-+
T Consensus 11 ~kl~~Vk~AL~~~G~~g~Tv~~V~G~G~qkg~~~~yrG~~~~~~~~pK~~ieivV~de~ve~Vv~~I~~~a~ 82 (118)
T 3t9z_A 11 EKLECVKKALEERGFVGMTVTEVKGRGEQKGIRLQFRGREVEVDLLQKTKVEVVVSDDAVDEVVEAIVSSAR 82 (118)
T ss_dssp GGHHHHHHHHHHTTCCCEEEEEEEEEC-----------------CEEEEEEEEEECGGGHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHCCCceEEEEeeEeecCcCCCccccccceeeecccceEEEEEEEChHHHHHHHHHHHHHhc
Confidence 457888888888888776443 4442 21 24566677789999999988754
No 39
>3ncq_A Nitrogen regulatory protein P-II (GLNB-2); PII signaling, nucleotide binding, GLNK, signaling Pro; HET: ATP; 1.24A {Archaeoglobus fulgidus} SCOP: d.58.5.0 PDB: 3ncp_A* 3ncr_A*
Probab=28.31 E-value=1.5e+02 Score=22.98 Aligned_cols=52 Identities=17% Similarity=0.252 Sum_probs=36.2
Q ss_pred ChHHHHHHHHHHhCCCceeEE---eccCC--cc-----------------eEEEEecCCcHHHHHHHHHHHHHh
Q 018397 274 CPELEELVNVCRNNGALGARL---TGAGW--GG-----------------CVVALVKESIDSQFILNLKEQFYQ 325 (356)
Q Consensus 274 ~peld~lv~~a~~~Ga~Gakl---sGaG~--GG-----------------~vi~l~~~~~~~~~~~~l~~~~~~ 325 (356)
...++.+.+.+.+.|+.|..+ .|-|- |. -+..+|+++.++.+++.|.+.-+.
T Consensus 10 p~kl~~Vk~AL~~~G~~g~Tv~~V~G~G~qkg~~~~yrG~~~~~~~~pK~kieivV~de~ve~vv~~I~~~a~T 83 (119)
T 3ncq_A 10 AEKFPEVKAALEERGFYGMTVTDVKGRGQQGGMQIQFRGRTMEVTLLPKVKLEIVVKDDAVEEVIGLIVNSAFT 83 (119)
T ss_dssp TTTHHHHHHHHHHTTCCCEEEEEEEEECSTTTTCBCSSSSCBCCCCEEEEEEEEEECGGGHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHCCCCeEEEEeeEeEcCccCCccccccceeeecccceEEEEEEEcHHHHHHHHHHHHHHhcC
Confidence 345788888888888877644 34443 21 255666778899999999886543
No 40
>2cz4_A Hypothetical protein TTHA0516; conserved hypothetical protein, PII-like signaling protein, structural genomics, NPPSFA; 1.93A {Thermus thermophilus} SCOP: d.58.5.1
Probab=24.63 E-value=99 Score=24.00 Aligned_cols=53 Identities=25% Similarity=0.384 Sum_probs=36.1
Q ss_pred CChHHHHHHHHHHhCCCceeEEecc-CCcc-------------eEEEEecCCcHHHHHHHHHHHHHh
Q 018397 273 SCPELEELVNVCRNNGALGARLTGA-GWGG-------------CVVALVKESIDSQFILNLKEQFYQ 325 (356)
Q Consensus 273 s~peld~lv~~a~~~Ga~GaklsGa-G~GG-------------~vi~l~~~~~~~~~~~~l~~~~~~ 325 (356)
..+.+|.+.+++.+.|+-|.-+++. |+|- -+..+++++.++.+++.|.+..+.
T Consensus 33 r~~k~e~V~~aL~~~Gi~G~TV~~V~G~G~q~~~t~~~~g~kv~IeiVv~de~ve~vv~~I~~~~~t 99 (119)
T 2cz4_A 33 ESLLEKRLVEEVKRLGAKGYTITPARGEGSRGIRSVDWEGQNIRLETIVSEEVALRILQRLQEEYFP 99 (119)
T ss_dssp EGGGHHHHHHHHHHTTCCCCEEEEEBCTTCCCTTCSCSTTCEEEEEEEECHHHHHHHHHHHHHHTTT
T ss_pred CHHHHHHHHHHHHhCCCCcEEEcCCEEecCCCCccccccCCCEEEEEEECHHHHHHHHHHHHHHhcC
Confidence 3566889999999888877644432 2222 355666667899999999866543
Done!