RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= 018397
(356 letters)
>gnl|CDD|215285 PLN02521, PLN02521, galactokinase.
Length = 497
Score = 619 bits (1599), Expect = 0.0
Identities = 258/336 (76%), Positives = 291/336 (86%), Gaps = 5/336 (1%)
Query: 26 GSGLSSSTAFVCSSTVALMAAFGVEVPKKEIAQLTCECEQFIGTQSGGMDQAISIMAKSG 85
GSGLSSS A VCS+ +A+MAA G+ KKE+AQ TC+CE+ IGTQSGGMDQAISIMA+ G
Sbjct: 161 GSGLSSSAALVCSAAIAIMAALGLNFTKKEVAQFTCKCERHIGTQSGGMDQAISIMAQQG 220
Query: 86 FAELIDFNPIRTTDVQLPAGGTFVVAHSLAESLKAITAASNYNNRVVECRLTAIVLAIKL 145
A+LIDFNP+R TDVQLPAGGTFV+A+SLAES KA+TAA+NYNNRVVECRL AIVLA+KL
Sbjct: 221 VAKLIDFNPVRATDVQLPAGGTFVIANSLAESNKAVTAATNYNNRVVECRLAAIVLAVKL 280
Query: 146 GMKPQEAISKVKTLSDVEGLCVAFACKNGSSDPVFAVKE-----PYTALDIEKITEEKLT 200
GM +EAISKVKTLSDVEGLCV+FA +GSSDP AVKE PYTA +IE+I E LT
Sbjct: 281 GMSAEEAISKVKTLSDVEGLCVSFAGSHGSSDPAVAVKELLHEGPYTAEEIEEILGESLT 340
Query: 201 SIFANSSSSLDVLNAAKQYKLHQRAAHVYSEAKRVHAFKDTVSSNLSEEDKLKKLGDLMN 260
SIF NS +SL VL AAK +KLHQRA HVYSEAKRVHAF+DTVSS+LSEE+KLKKLGDLMN
Sbjct: 341 SIFKNSPTSLAVLKAAKHFKLHQRAVHVYSEAKRVHAFRDTVSSSLSEEEKLKKLGDLMN 400
Query: 261 DSHHSCSVLYECSCPELEELVNVCRNNGALGARLTGAGWGGCVVALVKESIDSQFILNLK 320
+SH+SCSVLYECSCPELEELV VCR+NGALGARLTGAGWGGC VALVKE+I QFIL LK
Sbjct: 401 ESHYSCSVLYECSCPELEELVKVCRDNGALGARLTGAGWGGCAVALVKEAIVPQFILALK 460
Query: 321 EQFYQSRIDRGVINNNDLGLYVFASKPSSGAAKFKF 356
E+FY+SRI++GVI DLGLYVFASKPSSGAA KF
Sbjct: 461 EKFYKSRIEKGVIKEEDLGLYVFASKPSSGAAILKF 496
>gnl|CDD|223231 COG0153, GalK, Galactokinase [Carbohydrate transport and
metabolism].
Length = 390
Score = 172 bits (438), Expect = 2e-50
Identities = 94/334 (28%), Positives = 133/334 (39%), Gaps = 72/334 (21%)
Query: 25 LGSGLSSSTAFVCSSTVALMAAFGVEVPKKEIAQLTCECE-QFIGTQSGGMDQAISIMAK 83
+G+GLSSS A + +AL F + + K E+A++ E QF+G G MDQ S K
Sbjct: 126 IGAGLSSSAALEVAVALALQRLFNLPLDKAELAKIAQVAENQFVGVNCGIMDQLASAFGK 185
Query: 84 SGFAELIDFNPIRTTDVQLPAGG-TFVVAHSLAESLKAITAASNYNNRVVECRLTAIVLA 142
A L+D + V P GG + V+ +S K A S YN R EC A L
Sbjct: 186 KDHALLLDCRTLEYEPVPFPVGGVSIVIVNSNV---KRELADSEYNERRAECEEAAEFLG 242
Query: 143 IKLGMKPQEAISKVKTLSDVEGLCVAFACKNGSSDPVFAVKEPYTALDIEKITEEKLTSI 202
+ + K+L DV +D FA +
Sbjct: 243 VSI-----------KSLRDV-------------TDEEFAALQAE---------------- 262
Query: 203 FANSSSSLDVLNAAKQYKLHQRAAHVYSEAKRVHAFKDTVSSNLSEEDKLKKLGDLMNDS 262
K+ +RA HV +E +RV + L + G+LMN+S
Sbjct: 263 ------------IEVDPKIARRARHVVTENQRV---LEAA--KALRSGDLTEFGELMNES 305
Query: 263 HHSCSVLYECSCPELEELVN-VCRNNGALGARLTGAGWGGCVVALVKESIDSQFILNLKE 321
H S YE +CPEL+ LV GA GAR+TGAG+GGCV+ALV + E
Sbjct: 306 HESLRDDYEVTCPELDTLVEIALAAGGAYGARMTGAGFGGCVIALVPNDDVEAVAEAVAE 365
Query: 322 QFYQSRIDRGVINNNDLGLYVFASKPSSGAAKFK 355
++ + L + + S GA
Sbjct: 366 EYEKVT---------GLKAAFYVVEASQGAGVCD 390
>gnl|CDD|232841 TIGR00131, gal_kin, galactokinase. Galactokinase is a member of
the GHMP kinases (Galactokinase, Homoserine kinase,
Mevalonate kinase, Phosphomevalonate kinase) and shares
with them an amino-terminal domain probably related to
ATP binding.The galactokinases found by This model are
divided into two sets. Prokaryotic forms are generally
shorter. The eukaryotic forms are longer because of
additional central regions and in some cases are known
to be bifunctional, with regulatory activities that are
independent of galactokinase activity [Energy
metabolism, Sugars].
Length = 386
Score = 154 bits (390), Expect = 2e-43
Identities = 102/333 (30%), Positives = 140/333 (42%), Gaps = 76/333 (22%)
Query: 25 LGSGLSSSTAFVCSSTVALMAAFGVEVPKKEIAQLTCECE-QFIGTQSGGMDQAISIMAK 83
GSGLSSS AF C+ L + + K+I E F+G G MDQA S++ K
Sbjct: 121 TGSGLSSSAAFECAVGAVLQNMGHLPLDSKQILLRIQVAENHFVGVNCGIMDQAASVLGK 180
Query: 84 SGFAELIDFNPIRTTDVQLPAGG-TFVVAHSLAESLKAITAASNYNNRVVECRLTAIVLA 142
A L++ ++ T + P G FV+A++ +K A SNYN R EC A LA
Sbjct: 181 EDHALLVECRSLKATPFKFPQLGIAFVIANTN---VKRTLAPSNYNTRRQECTTAANFLA 237
Query: 143 IKLGMKPQEAISKVKTLSDVEGLCVAFACKNGSSDPVFAVKEPYTALDIEKITEEKLTSI 202
L D Y A I ++T+
Sbjct: 238 ATD----------KGALRDF--------------------MNEYFARYIARLTK------ 261
Query: 203 FANSSSSLDVLNAAKQYKLHQRAAHVYSEAKRV----HAFKDTVSSNLSEEDKLKKLGDL 258
+ L +RA HV SE RV A KD D K+ G L
Sbjct: 262 -------MLPLVE-------ERAKHVVSENLRVLKAVKAMKD--------ND-FKQFGAL 298
Query: 259 MNDSHHSCSVLYECSCPELEELV-NVCRNNGALGARLTGAGWGGCVVALVKESIDSQFIL 317
MN+SH SC YEC+CPE++ELV + NG+ G+R+TGAG+GGC V LV +
Sbjct: 299 MNESHASCDDDYECTCPEIDELVCSAALVNGSGGSRMTGAGFGGCTVHLVPNENVDKVRQ 358
Query: 318 NLKEQFYQSRIDRGVINNNDLGLYVFASKPSSG 350
+ ++ Y + +L YV SKP +G
Sbjct: 359 AVADK-YPKKTGL------ELTFYVIVSKPGAG 384
>gnl|CDD|235163 PRK03817, PRK03817, galactokinase; Provisional.
Length = 351
Score = 113 bits (285), Expect = 1e-28
Identities = 86/301 (28%), Positives = 121/301 (40%), Gaps = 69/301 (22%)
Query: 25 LGSGLSSSTAFVCSSTVALMAAFGVEVPKKEIAQLTCECE-QFIGTQSGGMDQAISIMAK 83
+G+GLSSS + + AL A+ + + K E+A L E E +F+G G MDQ K
Sbjct: 97 IGAGLSSSASLEVAVAYALNEAYNLNLSKLELALLAREAENEFVGVPCGIMDQFAVAFGK 156
Query: 84 SGFAELIDFNPIRTTDVQLPAGGTFVVAHSLAESLKAITAASNYNNRVVECRLTAIVLAI 143
A +D + V P +V + +K A+S YN R
Sbjct: 157 KDHAIFLDTMTLEYEYVPFPEDYEILVFDT---GVKRELASSEYNERR------------ 201
Query: 144 KLGMKPQEAISKVKTLSDVEGLCVAFACKNGSSDPVFAVKEPYTALDIEKITEEKLTSIF 203
QE +K L K S + +TEE L
Sbjct: 202 ------QECEEALKILG-----------KKSSKE----------------VTEEDL---- 224
Query: 204 ANSSSSLDVLNAAKQYKLHQRAAHVYSEAKRVHAFKDTVSSNLSEEDKLKKLGDLMNDSH 263
S L L L +RA +V E +RV +D L E D ++ LG+L+ +SH
Sbjct: 225 ----SKLPPL-------LRKRAGYVLRENERVLKVRDA----LKEGD-IETLGELLTESH 268
Query: 264 HSCSVLYECSCPELEELVNVCRNNGALGARLTGAGWGGCVVALVKESIDSQFILNLKEQF 323
+ YE SC EL+ V GA GARLTGAG+GG +ALV + L E++
Sbjct: 269 WDLADNYEVSCEELDFFVEFALELGAYGARLTGAGFGGSAIALVDKGKFESIGEELLEEY 328
Query: 324 Y 324
Sbjct: 329 K 329
>gnl|CDD|235407 PRK05322, PRK05322, galactokinase; Provisional.
Length = 387
Score = 108 bits (271), Expect = 2e-26
Identities = 86/315 (27%), Positives = 127/315 (40%), Gaps = 81/315 (25%)
Query: 26 GSGLSSSTAFVCSSTVALMAAFGVEVPKKEIAQLTCECE-QFIGTQSGGMDQAISIMAKS 84
G+GLSSS + + V L F +++ + E+ +L + E +FIG SG MDQ M K
Sbjct: 124 GAGLSSSASIELLTGVILKDLFNLDLDRLELVKLGQKTENEFIGVNSGIMDQFAIGMGKK 183
Query: 85 GFAELIDFNPIRTTDVQLPAGGTFVV------AHSLAESLKAITAASNYNNRVVECRLTA 138
A L+D N + V L G +V LA+S YN R EC
Sbjct: 184 DHAILLDCNTLEYEYVPLDLGDYVIVIMNTNKRRELADS--------KYNERRAEC---- 231
Query: 139 IVLAIKLGMKPQEAISKVKTLSDVEGLCVAFACKNGSSDPVFAVKEPYTALDIEKITEEK 198
++A+ +++ D++ L L E+ E
Sbjct: 232 -----------EKALEELQKKLDIKSLG---------------------ELTEEEFDEYS 259
Query: 199 LTSIFANSSSSLDVLNAAKQYKLHQRAAHVYSEAKRV----HAFKDTVSSNLSEEDKLKK 254
++ K RA H +E +R A K L+K
Sbjct: 260 ------------YLIKDETLLK---RARHAVTENQRTLKAVKALKA---------GDLEK 295
Query: 255 LGDLMNDSHHSCSVLYECSCPELEELVNVC-RNNGALGARLTGAGWGGCVVALVKESIDS 313
G LMN SH S YE + EL+ LV + G LGAR+TGAG+GGC +A+VK+
Sbjct: 296 FGRLMNASHVSLRDDYEVTGLELDTLVEAAWKQEGVLGARMTGAGFGGCAIAIVKKDKVE 355
Query: 314 QFILNLKEQFYQSRI 328
F N+ + Y+ +I
Sbjct: 356 AFKENVGKA-YEEKI 369
>gnl|CDD|179063 PRK00555, PRK00555, galactokinase; Provisional.
Length = 363
Score = 93.8 bits (233), Expect = 2e-21
Identities = 72/288 (25%), Positives = 108/288 (37%), Gaps = 64/288 (22%)
Query: 25 LGSGLSSSTAFVCSSTVALMAAFGVEVPKKEIAQLTCECE-QFIGTQSGGMDQAISIMAK 83
+GSGLSSS A C+ A+ AA G + + E A+L E +++G +G +DQ ++
Sbjct: 102 IGSGLSSSAALECAVLGAVGAATGTRIDRLEQARLAQRAENEYVGAPTGLLDQLAALFGA 161
Query: 84 SGFAELIDFNPIRTTDVQLPAGGTFVVAHSLAESLKAITAASNYNNRVVECRLTAIVLAI 143
A LIDF + V VV + + A Y R C A L
Sbjct: 162 PKTALLIDFRDLTVRPVAFDPDAAGVVLLLMDSRARHRHAGGEYAARRASCERAAADLG- 220
Query: 144 KLGMKPQEAISKVKTLSDV-EGLCVAFACKNGSSDPVFAVKEPYTALDIEKITEEKLTSI 202
V +L V + A A+ +P A
Sbjct: 221 ------------VSSLRAVQDRGLAALG----------AIADPIDA-------------- 244
Query: 203 FANSSSSLDVLNAAKQYKLHQRAAHVYSEAKRVHAFKDTVSSNLSEEDKLKKLGDLMNDS 262
+RA HV +E +RV F ++ + G L+ S
Sbjct: 245 --------------------RRARHVLTENQRVLDFAAALADS-----DFTAAGQLLTAS 279
Query: 263 HHSCSVLYECSCPELEELVNVCRNNGALGARLTGAGWGGCVVALVKES 310
H S +E + ++ + + GALGAR+TG G+GGCV+ALV
Sbjct: 280 HASMRDDFEITTERIDLIADSAVRAGALGARMTGGGFGGCVIALVPAD 327
>gnl|CDD|179937 PRK05101, PRK05101, galactokinase; Provisional.
Length = 382
Score = 87.7 bits (218), Expect = 2e-19
Identities = 88/315 (27%), Positives = 124/315 (39%), Gaps = 81/315 (25%)
Query: 25 LGSGLSSSTAFVCSSTVALMAAFGVEVPKKEIAQLTCECE-QFIGTQSGGMDQAISIMAK 83
G+GLSSS + + + + + EIA E E QF+G G MDQ IS + K
Sbjct: 123 QGAGLSSSASLEVAVGQTFQQLYHLPLSGAEIALNGQEAENQFVGCNCGIMDQLISALGK 182
Query: 84 SGFAELIDFNPIRTTDVQLPAGGTFVVAHSLAESLKAITAASNYNNRVVECRLTAIVLAI 143
A LID + T V +P G V+ +S ++K S YN R +C A
Sbjct: 183 KDHALLIDCRSLETKAVPMPEGVAVVIINS---NVKRGLVDSEYNTRRQQCETAA----- 234
Query: 144 KLGMKPQEAISKVKTLSDVEGLCVAFACKNGSSDPVFAVKEPYTALDIEKITEEKLTSIF 203
VK L DV F DPV A
Sbjct: 235 --------RFFGVKALRDVT--LEQFNAVAAELDPVVA---------------------- 262
Query: 204 ANSSSSLDVLNAAKQYKLHQRAAHVYSEAKRVHAFKDTVSSNLSEEDKLKKLGDLMNDSH 263
+RA HV +E R L+ D LK++G+LM +SH
Sbjct: 263 -------------------KRARHVITENARTLEAASA----LAAGD-LKRMGELMAESH 298
Query: 264 HSCSVLYECSCPELEELV----NVCRNNGALGARLTGAGWGGCVVAL--------VKESI 311
S +E + P+++ LV V + G G R+TG G+GGC+VAL V++++
Sbjct: 299 ASMRDDFEITVPQIDTLVEIVKAVIGDQG--GVRMTGGGFGGCIVALVPEELVEAVRQAV 356
Query: 312 DSQF--ILNLKEQFY 324
Q+ LKE FY
Sbjct: 357 AEQYEAKTGLKETFY 371
>gnl|CDD|215466 PLN02865, PLN02865, galactokinase.
Length = 423
Score = 79.5 bits (196), Expect = 2e-16
Identities = 76/291 (26%), Positives = 115/291 (39%), Gaps = 62/291 (21%)
Query: 26 GSGLSSSTAFVCSSTVALMAAFGVEVPKKEIAQLTCECE-QFIGTQSGGMDQAISIMAKS 84
SGLSSS A + +AL A + V ++ +L E +++G ++G +DQ+ ++++
Sbjct: 143 SSGLSSSAAVGVAYLLALENANNLTVSPEDNIELDRLIENEYLGLRNGILDQSAILLSRY 202
Query: 85 GFAELIDFNPIRTTDVQLPAGGT-----FVVAHSLAESLKAITAASNYNNRVVECRLTAI 139
G +D + V L F + + + A+T YN RV EC+ A
Sbjct: 203 GCLTFMDCKTLDHKLVSLQFQQPGGEKPFKILLAFSGLRHALTNKPGYNLRVSECQEAAR 262
Query: 140 VLAIKLGMKPQEAISKVKTLSDVEGLCVAFACKNGSSDPVFAVKEPYTALDIEKITEEKL 199
L G E + L +VE E Y A + KL
Sbjct: 263 FLLEASGNDELEPL-----LCNVE-------------------PEVYEAH------KCKL 292
Query: 200 TSIFANSSSSLDVLNAAKQYKLHQRAAHVYSEAKRVHA-FKDTVSSNLSEEDKLKKLGDL 258
++ A +RA H +SE RV + S NL E G L
Sbjct: 293 EAVLA------------------RRAEHYFSENMRVIKGVEAWASGNLEE------FGKL 328
Query: 259 MNDSHHSCSVLYECSCPELEELVNVC-RNNGALGARLTGAGWGGCVVALVK 308
++ S S YEC C L +L + + G GAR +GAG+ GC VA V
Sbjct: 329 ISASGLSSIENYECGCEPLIQLYEILLKAPGVYGARFSGAGFRGCCVAFVD 379
>gnl|CDD|224493 COG1577, ERG12, Mevalonate kinase [Lipid metabolism].
Length = 307
Score = 68.5 bits (168), Expect = 5e-13
Identities = 30/64 (46%), Positives = 41/64 (64%), Gaps = 7/64 (10%)
Query: 248 EEDKLKKLGDLMNDSHHSCSVLYEC---SCPELEELVNVCRNNGALGARLTGAGWGGCVV 304
+ ++LG+LMN + L + S PEL+ELV R+ GALGA+LTGAG GGC++
Sbjct: 221 QTGDFEELGELMNINQG----LLKALGVSTPELDELVEAARSLGALGAKLTGAGGGGCII 276
Query: 305 ALVK 308
AL K
Sbjct: 277 ALAK 280
Score = 43.1 bits (102), Expect = 1e-04
Identities = 24/88 (27%), Positives = 40/88 (45%), Gaps = 4/88 (4%)
Query: 25 LGSGLSSSTAFVCSSTVALMAAFGVEVPKKEIAQLTCECEQFIGTQSGGMDQAISIMAKS 84
+G+GL SS A + AL A FGVE+ +E+A+L + E + ++ G+D A
Sbjct: 94 IGAGLGSSAAVSVAVIKALSAYFGVELSPEELAKLANKVELIVQGKASGIDIATITY--G 151
Query: 85 GFAELIDFNPIRTTDVQLPAGGTFVVAH 112
G +++ GT V+
Sbjct: 152 GLVAFKKGFDFEK--LEIELLGTLVIGD 177
>gnl|CDD|240351 PTZ00298, PTZ00298, mevalonate kinase; Provisional.
Length = 328
Score = 68.3 bits (167), Expect = 7e-13
Identities = 33/91 (36%), Positives = 46/91 (50%), Gaps = 12/91 (13%)
Query: 220 KLHQRAAHVYSEAKRVHAFKDTVSSNLSEEDKLKKLGDLMNDSHHSCSVLYECSCPELEE 279
+L + SEAK ++ L ++G+LMN +H C L SC EL+
Sbjct: 218 RLLENYNACVSEAKEA-----------LQKGNLFRVGELMNANHDLCQKL-TVSCRELDS 265
Query: 280 LVNVCRNNGALGARLTGAGWGGCVVALVKES 310
+V CR GALGA+++G G GG VVAL
Sbjct: 266 IVQTCRTYGALGAKMSGTGRGGLVVALAASE 296
>gnl|CDD|233017 TIGR00549, mevalon_kin, mevalonate kinase. This model represents
mevalonate kinase, the third step in the mevalonate
pathway of isopentanyl pyrophosphate (IPP) biosynthesis.
IPP is a common intermediate for a number of pathways
including cholesterol biosynthesis. This model covers
enzymes from eukaryotes, archaea and bacteria. The
related enzyme from the same pathway, phosphmevalonate
kinase, serves as an outgroup for this clade. Paracoccus
exhibits two genes within the
phosphomevalonate/mevalonate kinase family, one of which
falls between trusted and noise cutoffs of this model.
The degree of divergence is high, but if the trees
created from this model are correct, the proper names of
these genes have been swapped [Central intermediary
metabolism, Other].
Length = 274
Score = 66.2 bits (162), Expect = 2e-12
Identities = 28/62 (45%), Positives = 41/62 (66%), Gaps = 7/62 (11%)
Query: 248 EEDKLKKLGDLMNDSH---HSCSVLYECSCPELEELVNVCRNNGALGARLTGAGWGGCVV 304
E+ ++ LG+LMN + + V S P+L++LV + R GALGA+LTGAG GGC++
Sbjct: 217 EDGDVESLGELMNINQGLLKALGV----SHPKLDQLVEIARKAGALGAKLTGAGGGGCMI 272
Query: 305 AL 306
AL
Sbjct: 273 AL 274
Score = 43.4 bits (103), Expect = 8e-05
Identities = 28/88 (31%), Positives = 39/88 (44%), Gaps = 4/88 (4%)
Query: 26 GSGLSSSTAFVCSSTVALMAAFGVEVPKKEIAQLTCECEQFIGTQSGGMDQAISIMAKSG 85
G GL SS A + AL FG E+ K+E+A+L E E+ + G+D A S G
Sbjct: 91 GRGLGSSAAVAVALIRALADYFGSELSKEELAELANEAEKIAHGKPSGIDTATSTS--GG 148
Query: 86 FAELIDFNPIRTTDVQLPAGGTFVVAHS 113
T + L G FV+A +
Sbjct: 149 PVYFEKGEGEFTKLISLD--GYFVIADT 174
>gnl|CDD|219894 pfam08544, GHMP_kinases_C, GHMP kinases C terminal. This family
includes homoserine kinases, galactokinases and
mevalonate kinases.
Length = 86
Score = 60.6 bits (147), Expect = 7e-12
Identities = 31/85 (36%), Positives = 48/85 (56%), Gaps = 4/85 (4%)
Query: 244 SNLSEEDKLKKLGDLMNDSHHSC--SVLYECSCPELEELVNVCRNNGALGARLTGAGWGG 301
L E D L+ LG+L+N++ S + PEL+EL+ R GALGA+L+G+G G
Sbjct: 3 EALREGD-LELLGELLNENALSLEPLLYLGILSPELDELLEELRELGALGAKLSGSGGGP 61
Query: 302 CVVALVKESIDSQFILN-LKEQFYQ 325
V AL K+ D++ + L+E +
Sbjct: 62 TVFALFKDEEDAEEVAEALREAYPL 86
>gnl|CDD|215839 pfam00288, GHMP_kinases_N, GHMP kinases N terminal domain. This
family includes homoserine kinases, galactokinases and
mevalonate kinases.
Length = 67
Score = 55.3 bits (134), Expect = 3e-10
Identities = 24/57 (42%), Positives = 33/57 (57%), Gaps = 1/57 (1%)
Query: 25 LGSGLSSSTAFVCSSTVALMAAFGVEVPKKEIAQLTCECEQFIGTQSGGMDQAISIM 81
LG+GL SS A + +AL FG+ + K+E+A+L E E IG S G D A S+
Sbjct: 10 LGAGLGSSAALAVALLLALNELFGLPLSKEELARLALEAEGAIGVNS-GDDVAASVY 65
>gnl|CDD|179677 PRK03926, PRK03926, mevalonate kinase; Provisional.
Length = 302
Score = 58.5 bits (142), Expect = 1e-09
Identities = 27/58 (46%), Positives = 33/58 (56%), Gaps = 1/58 (1%)
Query: 250 DKLKKLGDLMNDSHHSCSVLYECSCPELEELVNVCRNNGALGARLTGAGWGGCVVALV 307
LG+LMN + L S EL EL+ R GALGA++TGAG GGC+VAL
Sbjct: 211 GDYVSLGELMNINQGLLDAL-GVSTKELSELIYAARTAGALGAKITGAGGGGCMVALA 267
Score = 38.1 bits (89), Expect = 0.005
Identities = 18/56 (32%), Positives = 28/56 (50%)
Query: 26 GSGLSSSTAFVCSSTVALMAAFGVEVPKKEIAQLTCECEQFIGTQSGGMDQAISIM 81
GSGL SS A ++ AL G+ + +EIA+L + E + + D +S M
Sbjct: 87 GSGLGSSAAVTVATIGALNRLLGLGLSLEEIAKLGHKVELLVQGAASPTDTYVSTM 142
>gnl|CDD|240347 PTZ00290, PTZ00290, galactokinase; Provisional.
Length = 468
Score = 57.1 bits (138), Expect = 5e-09
Identities = 26/81 (32%), Positives = 49/81 (60%), Gaps = 5/81 (6%)
Query: 246 LSEEDKLKKLGDLMNDSHHSCSVLYECSCPELE---ELVNVCRNNGALGARLTGAGWGGC 302
LS E++ +K G+++N H L + + PEL+ EL+N G G R+ G G+GGC
Sbjct: 356 LSREERFRKAGEILNAGHQGMRDLMKITTPELDFIHELIN--EEKGVAGGRMMGGGFGGC 413
Query: 303 VVALVKESIDSQFILNLKEQF 323
++ L+K++ + + +++E+F
Sbjct: 414 IILLLKKNAVDRVVAHVREKF 434
Score = 30.6 bits (69), Expect = 1.4
Identities = 22/86 (25%), Positives = 34/86 (39%), Gaps = 29/86 (33%)
Query: 25 LGSGLSSSTAFVCSSTVALMAAFGVEV---------------------PKKEIAQLTCEC 63
+G+G+S+S +F VAL+ A V K+E+ +L +
Sbjct: 145 MGAGMSASASF----GVALLNAINTVVTRRYKGCPTSPGRRYSILPPMSKEELIELAKQA 200
Query: 64 E----QFIGTQSGGMDQAISIMAKSG 85
+F G G MDQ IS A+
Sbjct: 201 RRIETEFCGVNVGIMDQFISAFAEED 226
>gnl|CDD|226917 COG4542, PduX, Protein involved in propanediol utilization, and
related proteins (includes coumermycin biosynthetic
protein), possible kinase [Secondary metabolites
biosynthesis, transport, and catabolism].
Length = 293
Score = 37.1 bits (86), Expect = 0.010
Identities = 14/39 (35%), Positives = 22/39 (56%)
Query: 26 GSGLSSSTAFVCSSTVALMAAFGVEVPKKEIAQLTCECE 64
G G++SSTA + ++ A G E+ + EIA+L E
Sbjct: 95 GKGMASSTADLVATARATARFLGRELRESEIAKLCVSIE 133
>gnl|CDD|225325 COG2605, COG2605, Predicted kinase related to galactokinase and
mevalonate kinase [General function prediction only].
Length = 333
Score = 34.3 bits (79), Expect = 0.080
Identities = 17/75 (22%), Positives = 32/75 (42%), Gaps = 6/75 (8%)
Query: 237 AFKDTVSSNLSEEDKLKKLGDLMNDSHHSCSVLYE-CSCPELEELVNVCRNNGALGARLT 295
KD + N + + G +++ + L S ++ + + NGA G +L+
Sbjct: 232 EMKDALVRN-----DIPEFGQILDRGWEAKKKLSSRISNDAIDRIYELALKNGAYGGKLS 286
Query: 296 GAGWGGCVVALVKES 310
GAG GG ++ S
Sbjct: 287 GAGGGGFLLFFCDPS 301
Score = 29.7 bits (67), Expect = 2.3
Identities = 25/74 (33%), Positives = 33/74 (44%), Gaps = 12/74 (16%)
Query: 26 GSGLSSSTAFVCSSTVALMAAF----GVEVPKKEIAQLTCECEQFIGTQSGG-MDQAISI 80
GSGL SS+AFV VAL+ A G + E+A+ E E+ GG DQ
Sbjct: 101 GSGLGSSSAFV----VALLNALHAWKGESLGPYELAREAYEIEREDLKIVGGKQDQ---Y 153
Query: 81 MAKSGFAELIDFNP 94
A G ++F
Sbjct: 154 AAAFGGFNFMEFRG 167
>gnl|CDD|236995 PRK11824, PRK11824, polynucleotide phosphorylase/polyadenylase;
Provisional.
Length = 693
Score = 33.9 bits (79), Expect = 0.14
Identities = 17/33 (51%), Positives = 21/33 (63%), Gaps = 2/33 (6%)
Query: 25 LGSGLSSSTAFVCSSTVALMAAFGVEVPKKEIA 57
L S SSS A VC S++ALM A GV + K +A
Sbjct: 432 LESNGSSSMASVCGSSLALMDA-GVPI-KAPVA 462
>gnl|CDD|224599 COG1685, COG1685, Archaeal shikimate kinase [Amino acid transport
and metabolism / Coenzyme metabolism].
Length = 278
Score = 32.3 bits (74), Expect = 0.28
Identities = 14/35 (40%), Positives = 21/35 (60%)
Query: 25 LGSGLSSSTAFVCSSTVALMAAFGVEVPKKEIAQL 59
+GSGL SS+A + A++ A G E+ EI +L
Sbjct: 81 VGSGLKSSSAASNALVKAVLKALGEEIDDFEILRL 115
>gnl|CDD|206769 cd11364, RNase_PH_PNPase_2, Polyribonucleotide
nucleotidyltransferase, repeat 2. Polyribonucleotide
nucleotidyltransferase (PNPase) is a member of the
RNase_PH family, named after the bacterial Ribonuclease
PH, a 3'-5' exoribonuclease. Structurally, all members
of this family form hexameric rings. In the case of
PNPase the complex is a trimer, since each monomer
contains two tandem copies of the domain. PNPase is
involved in mRNA degradation in a 3'-5' direction and in
quality control of ribosomal RNA precursors, with the
second repeat containing the active site. PNPase is part
of the RNA degradosome complex and binds to the
scaffolding domain of the endoribonuclease RNase E.
Length = 223
Score = 32.1 bits (74), Expect = 0.34
Identities = 16/33 (48%), Positives = 20/33 (60%), Gaps = 2/33 (6%)
Query: 25 LGSGLSSSTAFVCSSTVALMAAFGVEVPKKEIA 57
L S SSS A VC ++ALM A GV + K +A
Sbjct: 110 LESNGSSSMASVCGGSLALMDA-GVPI-KAPVA 140
>gnl|CDD|234271 TIGR03591, polynuc_phos, polyribonucleotide nucleotidyltransferase.
Members of this protein family are polyribonucleotide
nucleotidyltransferase, also called polynucleotide
phosphorylase. Some members have been shown also to have
additional functions as guanosine pentaphosphate
synthetase and as poly(A) polymerase (see model
TIGR02696 for an exception clade, within this family)
[Transcription, Degradation of RNA].
Length = 684
Score = 32.1 bits (74), Expect = 0.55
Identities = 12/20 (60%), Positives = 14/20 (70%), Gaps = 1/20 (5%)
Query: 30 SSSTAFVCSSTVALMAAFGV 49
SSS A VC ++ALM A GV
Sbjct: 433 SSSMASVCGGSLALMDA-GV 451
>gnl|CDD|237379 PRK13412, fkp, bifunctional
fucokinase/L-fucose-1-P-guanylyltransferase;
Provisional.
Length = 974
Score = 31.7 bits (72), Expect = 0.66
Identities = 19/54 (35%), Positives = 27/54 (50%), Gaps = 4/54 (7%)
Query: 26 GSGLSSSTAFVCSSTV--ALMAAFGVEVPKKEIAQLTCECEQFIGTQSGGMDQA 77
GSGL +S+ + ++TV A+ G+ K EI T EQ + T G DQ
Sbjct: 738 GSGLGTSS--ILAATVLGAISDFCGLAWDKNEICNRTLVLEQLLTTGGGWQDQY 789
>gnl|CDD|224106 COG1185, Pnp, Polyribonucleotide nucleotidyltransferase
(polynucleotide phosphorylase) [Translation, ribosomal
structure and biogenesis].
Length = 692
Score = 31.4 bits (72), Expect = 0.90
Identities = 16/34 (47%), Positives = 19/34 (55%), Gaps = 4/34 (11%)
Query: 25 LGSGLSSSTAFVCSSTVALMAAFGVEVP-KKEIA 57
L S SSS A VC ++ALM A VP K +A
Sbjct: 430 LESNGSSSMASVCGGSLALMDA---GVPIKAPVA 460
>gnl|CDD|234906 PRK01123, PRK01123, shikimate kinase; Provisional.
Length = 282
Score = 30.2 bits (69), Expect = 1.3
Identities = 12/35 (34%), Positives = 21/35 (60%)
Query: 25 LGSGLSSSTAFVCSSTVALMAAFGVEVPKKEIAQL 59
L SGL SS+A ++ +A + A G ++ +I +L
Sbjct: 86 LASGLKSSSAAANATVLATLDALGEDLDDLDILRL 120
>gnl|CDD|215248 PLN02451, PLN02451, homoserine kinase.
Length = 370
Score = 30.5 bits (69), Expect = 1.5
Identities = 15/40 (37%), Positives = 21/40 (52%)
Query: 25 LGSGLSSSTAFVCSSTVALMAAFGVEVPKKEIAQLTCECE 64
LGSGL SS A ++ VA+ FG + K ++ E E
Sbjct: 145 LGSGLGSSAASAAAAAVAVNELFGSPLGKDDLVLAGLESE 184
>gnl|CDD|215363 PLN02677, PLN02677, mevalonate kinase.
Length = 387
Score = 30.2 bits (68), Expect = 1.6
Identities = 22/63 (34%), Positives = 32/63 (50%), Gaps = 9/63 (14%)
Query: 247 SEEDKLKKLGDLMNDSHHSCSVLYECSCPELEELVNVCRNNGA--LGARLTGAGWGGCVV 304
+E+KLK+L + MN L +C + V R L ++LTGAG GGCV+
Sbjct: 291 EKEEKLKELME-MNQG------LLQCMGVSHSSIETVLRTTLKYKLVSKLTGAGGGGCVL 343
Query: 305 ALV 307
L+
Sbjct: 344 TLL 346
Score = 30.2 bits (68), Expect = 1.9
Identities = 20/69 (28%), Positives = 31/69 (44%), Gaps = 14/69 (20%)
Query: 25 LGSGLSSSTAFVCSSTVALMAAFG-------------VEVPKKEIA-QLTCECEQFIGTQ 70
LGSGL SS AF + + AL+AA ++ E+ + E E+ I +
Sbjct: 140 LGSGLGSSAAFCVALSAALLAASDSISVSTGGNGWSSLDETDLELVNKWAFEGEKIIHGK 199
Query: 71 SGGMDQAIS 79
G+D +S
Sbjct: 200 PSGIDNTVS 208
>gnl|CDD|233637 TIGR01920, Shik_kin_archae, shikimate kinase. This model
represents the shikimate kinase (SK) gene found in
archaea which is only distantly related to homoserine
kinase (thrB) and not atr all to the bacterial SK
enzyme. The SK from M. janaschii has been overexpressed
in E. coli and characterized. SK catalyzes the fifth
step of the biosynthesis of chorismate from
D-erythrose-4-phosphate and phosphoenolpyruvate [Amino
acid biosynthesis, Aromatic amino acid family].
Length = 261
Score = 29.7 bits (67), Expect = 1.8
Identities = 15/35 (42%), Positives = 22/35 (62%)
Query: 25 LGSGLSSSTAFVCSSTVALMAAFGVEVPKKEIAQL 59
GSGL SS+A V + A++ A GVE+ +I +L
Sbjct: 75 AGSGLKSSSALVNALVEAVLKAKGVEIDDIDILRL 109
>gnl|CDD|188029 TIGR00154, ispE, 4-diphosphocytidyl-2C-methyl-D-erythritol kinase.
Members of this family of GHMP kinases were previously
designated as conserved hypothetical protein YchB or as
isopentenyl monophosphate kinase. It is now known, in
tomato and E. coli, to encode
4-diphosphocytidyl-2C-methyl-D-erythritol kinase, an
enzyme of the deoxyxylulose phosphate pathway of
terpenoid biosynthesis [Biosynthesis of cofactors,
prosthetic groups, and carriers, Other].
Length = 294
Score = 29.0 bits (65), Expect = 3.5
Identities = 12/58 (20%), Positives = 26/58 (44%), Gaps = 2/58 (3%)
Query: 275 PELEELVNVCRNNGALGARLTGAGWGGCVVALVKESIDSQFILNLKEQFYQSRIDRGV 332
E+ + +N G R++G+ G CV AL +++ +L ++ + +G
Sbjct: 229 TEVAQALNWLLEYGLAPERMSGS--GPCVFALFDMESEAEQVLEQAPEWLNGFVAKGY 284
>gnl|CDD|234920 PRK01212, PRK01212, homoserine kinase; Provisional.
Length = 301
Score = 29.0 bits (66), Expect = 3.6
Identities = 17/65 (26%), Positives = 28/65 (43%), Gaps = 10/65 (15%)
Query: 275 PELEELVNVCRNNGALGARLTGAGWGGCVVAL--------VKESIDSQFILNLKEQFYQS 326
P E+ GALGA ++GA G V AL V +++ F+ ++ +
Sbjct: 234 PGFAEVRQAALEAGALGAGISGA--GPTVFALCDKEDAEKVADALQKAFLQGIEGFVHVL 291
Query: 327 RIDRG 331
R+D
Sbjct: 292 RLDTA 296
>gnl|CDD|215187 PLN02328, PLN02328, lysine-specific histone demethylase 1 homolog.
Length = 808
Score = 28.8 bits (64), Expect = 5.4
Identities = 16/59 (27%), Positives = 31/59 (52%), Gaps = 1/59 (1%)
Query: 223 QRAAHVYSEA-KRVHAFKDTVSSNLSEEDKLKKLGDLMNDSHHSCSVLYECSCPELEEL 280
+ AA++ A +R D V+++ E+D L +L D + + S S+L++ + E L
Sbjct: 670 REAANILRVARRRSLCIDDKVNNDEEEDDCLDQLFDTPDLTFGSFSILFDPRSNDPESL 728
>gnl|CDD|223161 COG0083, ThrB, Homoserine kinase [Amino acid transport and
metabolism].
Length = 299
Score = 28.3 bits (64), Expect = 6.4
Identities = 15/40 (37%), Positives = 22/40 (55%)
Query: 25 LGSGLSSSTAFVCSSTVALMAAFGVEVPKKEIAQLTCECE 64
LG GL SS A + ++ A G+ + K+E+ QL E E
Sbjct: 88 LGRGLGSSAASIVAALAAANELAGLPLSKEELLQLALEIE 127
Score = 28.3 bits (64), Expect = 6.9
Identities = 22/58 (37%), Positives = 28/58 (48%), Gaps = 3/58 (5%)
Query: 275 PELEELVNVCRNNGALGARLTGAGWGGCVVALVKESIDSQFILNLKEQFYQSRIDRGV 332
P E+ GALGA L+GAG V AL ES D++ L E+ Y+ I V
Sbjct: 230 PGYAEVREAALEAGALGATLSGAGPT--VFALADES-DAEKAAALLEELYEQGIKGRV 284
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.318 0.131 0.372
Gapped
Lambda K H
0.267 0.0640 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 17,278,990
Number of extensions: 1617540
Number of successful extensions: 1524
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1497
Number of HSP's successfully gapped: 54
Length of query: 356
Length of database: 10,937,602
Length adjustment: 98
Effective length of query: 258
Effective length of database: 6,590,910
Effective search space: 1700454780
Effective search space used: 1700454780
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 60 (27.1 bits)