RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= 018397
(356 letters)
>2a2c_A N-acetylgalactosamine kinase; galactokinase, , transferase; HET:
NG1 ADP; 1.65A {Homo sapiens} PDB: 2a2d_A*
Length = 478
Score = 296 bits (759), Expect = 2e-97
Identities = 130/330 (39%), Positives = 187/330 (56%), Gaps = 14/330 (4%)
Query: 25 LGSGLSSSTAFVCSSTVALMAAFGVEVPKKEIAQLTCECEQFIGTQSGGMDQAISIMAKS 84
SGLSSS+A VC + + + G + K E+A++ + E++IGT+ GGMDQ+IS +A+
Sbjct: 160 PSSGLSSSSALVCCAGLVTLTVLGRNLSKVELAEICAKSERYIGTEGGGMDQSISFLAEE 219
Query: 85 GFAELIDFNPIRTTDVQLPAGGTFVVAHSLAESLKAITAASNYNNRVVECRLTAIVLAIK 144
G A+LI+F+P+R TDV+LP+G FV+A+S E KA A S++N RV+ECRL A +LA
Sbjct: 220 GTAKLIEFSPLRATDVKLPSGAVFVIANSCVEMNKA--ATSHFNIRVMECRLAAKLLAKY 277
Query: 145 LGMKPQEAISKVKTLSDVEGLCVAFACKNGSSDPVFAVKEPYTALDIEKITEEKLTSIFA 204
++ KV L +V+ + EPY +I + L +
Sbjct: 278 KSLQWD----KVLRLEEVQAKLGISLEEMLLVTEDALHPEPYNPEEICRCLGISLEELRT 333
Query: 205 NSSSSLDVLNAAKQYKLHQRAAHVYSEAKRVHAFKDTVSSNLSEEDKLKKLGDLMNDSHH 264
S +KL+QRA HVYSEA RV FK + E+ ++ LG+LMN SH
Sbjct: 334 QILSPNTQD--VLIFKLYQRAKHVYSEAARVLQFKKICEE--APENMVQLLGELMNQSHM 389
Query: 265 SCSVLYECSCPELEELVNVCRNNGALGARLTGAGWGGCVVALVKESIDSQFILNLKEQFY 324
SC +YECSCPEL++LV++CR GA G+RLTGAGWGGC V++V F+ N+ + +Y
Sbjct: 390 SCRDMYECSCPELDQLVDICRKFGAQGSRLTGAGWGGCTVSMVPADKLPSFLANVHKAYY 449
Query: 325 QSRIDRGVINNNDLGLYVFASKPSSGAAKF 354
Q R + +FA+KP GA
Sbjct: 450 Q----RSDGSLAPEKQSLFATKPGGGALVL 475
>3v2u_C Protein GAL3; rossmann fold, GHMP superfamily, transcription
regulation, transcription; HET: GLA ATP; 2.10A
{Saccharomyces cerevisiae} PDB: 3v5r_A 2aj4_A*
Length = 520
Score = 265 bits (679), Expect = 5e-85
Identities = 103/364 (28%), Positives = 164/364 (45%), Gaps = 35/364 (9%)
Query: 25 LGSGLSSSTAFVCSSTVALM-AAFGVEVPKKEIAQLTCECEQFIGTQSGGMDQAISIMAK 83
G GLSS+ + ++ KK++ ++T E ++G +GGMDQA S+ +
Sbjct: 158 TGGGLSSAFTCAAALATIRANMGKNFDISKKDLTRITAVAEHYVGVNNGGMDQATSVYGE 217
Query: 84 SGFAELIDFNP-IRTTDVQLP----AGGTFVVAHSLAESLKAITAASNYNNRVVECRLTA 138
A ++F P ++ T + P +FV+A++L +S K TA +NYN RV+E + A
Sbjct: 218 EDHALYVEFRPKLKATPFKFPQLKNHEISFVIANTLVKSNKFETAPTNYNLRVIEVTVAA 277
Query: 139 IVLAIKLGMK----PQEAISKVKTLSDVEGLCVAFACKNGSSDPVFAVKEPYTALDIEKI 194
LA + + + S+ L D A L + ++
Sbjct: 278 NALATRYSVALPSHKDNSNSERGNLRDFMDAYYARYENQAQPWNGDIGTGIERLLKMLQL 337
Query: 195 TEEKLTS-----IFANSSSSLDVLNA-------------AKQYKLHQRAAHVYSEAKRVH 236
EE + +S++L+ + KL+QRA HVYSE+ RV
Sbjct: 338 VEESFSRKKSGFTVHEASTALNCSREEFTRDYLTTFPVRFQVLKLYQRAKHVYSESLRVL 397
Query: 237 AFKDTVSSN--LSEEDKLKKLGDLMNDSHHSCSVLYECSCPELEELVNVCRNNGALGARL 294
++S ++ED G LMN+S SC LYECSC E ++ ++ NG+ G+RL
Sbjct: 398 KALKMMTSATFHTDEDFFTDFGRLMNESQASCDKLYECSCIETNQICSIALANGSFGSRL 457
Query: 295 TGAGWGGCVVALVKESIDS---QFILNLKEQFYQSRIDRGVINNNDLGLYVFASKPSSGA 351
TGAGWGGC + LV + Q L E+FY R + +L + SKP+ G
Sbjct: 458 TGAGWGGCTIHLVPSGANGNVEQVRKALIEKFYNVRYPDLT--DEELKDAIIVSKPALGT 515
Query: 352 AKFK 355
++
Sbjct: 516 CLYE 519
>2cz9_A Probable galactokinase; structural genomics, NPPSFA, national
project protein structural and functional analyses;
1.50A {Pyrococcus horikoshii} PDB: 2dei_A* 2dej_A*
1s4e_A*
Length = 350
Score = 190 bits (484), Expect = 7e-58
Identities = 61/328 (18%), Positives = 113/328 (34%), Gaps = 78/328 (23%)
Query: 25 LGSGLSSSTAFVCSSTVALMAAFGVEVPKKEIAQLTCECE-QFIGTQSGGMDQAISIMAK 83
LG+GLSSS +F L + +++ L + E +F+G G +DQ + +
Sbjct: 98 LGAGLSSSASFEVGILETLDKLYNLKLDSLSKVLLAKKAENEFVGVPCGILDQFAVVFGR 157
Query: 84 SGFAELIDFNPIRTTDVQLPAGGTFVVAHSLAESLKAITAASNYNNRVVECRLTAIVLAI 143
G +D + + + P + +V ++ ++ A+S Y R + +L
Sbjct: 158 EGNVIFLDTHTLDYEYIPFPKDVSILVFYT---GVRRELASSEYAERKHIAEESLKIL-- 212
Query: 144 KLGMKPQEAISKVKTLSDVEGLCVAFACKNGSSDPVFAVKEPYTALDIEKITEEKLTSIF 203
+ +V ++ K+
Sbjct: 213 -----------GKGSSKEV------------------------REGELSKLPPL------ 231
Query: 204 ANSSSSLDVLNAAKQYKLHQRAAHVYSEAKRVHAFKDTVSSNLSEEDKLKKLGDLMNDSH 263
+ ++ E RV +D +E ++++G ++ +H
Sbjct: 232 -----------------HRKFFGYIVRENARVLEVRD-----ALKEGNVEEVGKILTTAH 269
Query: 264 HSCSVLYECSCPELEELVNVCRNNGALGARLTGAGWGGCVVALVKESIDSQFILNLKEQF 323
+ YE SC EL+ V GA GARLTGAG+GG +ALV + + ++
Sbjct: 270 WDLAKNYEVSCKELDFFVERALKLGAYGARLTGAGFGGSAIALVDKEDAETIGEEILREY 329
Query: 324 YQSRIDRGVINNNDLGLYVFASKPSSGA 351
+ R F +PS G
Sbjct: 330 LK----RFPWKAR-----HFIVEPSDGV 348
>1pie_A Galactokinase; galactose, galactosemia, transferase; HET: GLA;
2.10A {Lactococcus lactis} SCOP: d.14.1.5 d.58.26.7
Length = 419
Score = 188 bits (478), Expect = 3e-56
Identities = 76/335 (22%), Positives = 120/335 (35%), Gaps = 81/335 (24%)
Query: 25 LGSGLSSSTAFVCSSTVALMAAFGVEVPKKEIAQLTCECE-QFIGTQSGGMDQAISIMAK 83
SGLSSS + V L F + VP+ E+ QL + E +IG SG +DQ +
Sbjct: 152 TASGLSSSASLELLVGVVLDDLFNLNVPRLELVQLGQKTENDYIGVNSGILDQFAIGFGE 211
Query: 84 SGFAELIDFNPIRTTDVQLPAGGTFVVA------HSLAESLKAITAASNYNNRVVECRLT 137
A +D N ++ V + +V +L ES YN R E R
Sbjct: 212 VKKAIELDCNTLKYEMVPVELRDYDIVIMNTNKPRALTES--------KYNERFAETREA 263
Query: 138 AIVLAIKLGMKPQEAISKVKTLSDVEGLCVAFACKNGSSDPVFAVKEPYTALDIEKITEE 197
+ +L +++L ++ + E
Sbjct: 264 LKRMQTRLD---------IQSLGEL--------------------------------SNE 282
Query: 198 KLTSIFANSSSSLDVLNAAKQYKLHQRAAHVYSEAKRVHAFKDTVSSNLSEEDKLKKLGD 257
+ + D++ K RA H E R + + L K G+
Sbjct: 283 EFDAN-------TDLIGDETLIK---RARHAVYENNRTKIAQK----AFVAGN-LTKFGE 327
Query: 258 LMNDSHHSCSVLYECSCPELEELVNVCRN-NGALGARLTGAGWGGCVVALVKESIDSQFI 316
L+N SH S YE + EL+ L + G LGAR+TGAG+GGC +ALV S F
Sbjct: 328 LLNASHASLKDDYEVTGLELDTLAETAQKQAGVLGARMTGAGFGGCAIALVAHDNVSAFR 387
Query: 317 LNLKEQFYQSRIDRGVINNNDLGLYVFASKPSSGA 351
+ + + + + ++ SG+
Sbjct: 388 KAVGQVYEE---------VVGYPASFYVAQIGSGS 413
>1wuu_A Galactokinase; galactosemia, GHMP superfamily, transferase; HET:
GLA ANP; 2.50A {Homo sapiens} SCOP: d.14.1.5 d.58.26.7
Length = 399
Score = 180 bits (458), Expect = 2e-53
Identities = 81/335 (24%), Positives = 121/335 (36%), Gaps = 90/335 (26%)
Query: 25 LGSGLSSSTAFVCSSTVALMAAFGVEVPKKEIAQLTCECE-QFIGTQSGGMDQAISIMAK 83
LG GLSSS + ++ L AQ+ + E F G G MDQ IS+M +
Sbjct: 142 LGGGLSSSASLEVATYTFLQQLCPDSGTIAARAQVCQQAEHSFAGMPCGIMDQFISLMGQ 201
Query: 84 SGFAELIDFNPIRTTDVQLPAGG-TFVVA-----HSLAESLKAITAASNYNNRVVECRLT 137
G A LID + T+ V L ++ HSLA S Y R +C
Sbjct: 202 KGHALLIDCRSLETSLVPLSDPKLAVLITNSNVRHSLASS--------EYPVRRRQCEEV 253
Query: 138 AIVLAIKLGMKPQEAISKVKTLSDVEGLCVAFACKNGSSDPVFAVKEPYTALDIEKITEE 197
A ++L +V E
Sbjct: 254 A-------------RALGKESLREV--------------------------------QLE 268
Query: 198 KLTSIFANSSSSLDVLNAAKQYKLHQRAAHVYSEAKRVHAFKDTVSSNLSEEDKLKKLGD 257
+L + D+++ + +RA HV E +R L D + G
Sbjct: 269 ELEAA-------RDLVSK----EGFRRARHVVGEIRRTAQAAA----ALRRGD-YRAFGR 312
Query: 258 LMNDSHHSCSVLYECSCPELEELVNVCRN-NGALGARLTGAGWGGCVVALVKESIDSQFI 316
LM +SH S YE SCPEL++LV G G+R+TG G+GGC V L++ S +
Sbjct: 313 LMVESHRSLRDDYEVSCPELDQLVEAALAVPGVYGSRMTGGGFGGCTVTLLEASAAPHAM 372
Query: 317 LNLKEQFYQSRIDRGVINNNDLGLYVFASKPSSGA 351
+++E + + S+ + GA
Sbjct: 373 RHIQEHYG-------------GTATFYLSQAADGA 394
>1kkh_A Mevalonate kinase; mixed beta sheet, phosphate-binding loop,
beta-alpha-beta, transferase; 2.40A {Methanocaldococcus
jannaschii} SCOP: d.14.1.5 d.58.26.3 PDB: 1vis_A
Length = 317
Score = 103 bits (260), Expect = 1e-25
Identities = 30/160 (18%), Positives = 56/160 (35%), Gaps = 13/160 (8%)
Query: 168 AFACKNGSSDPVFAVKEPYTALDIEKITEEKLTS--IFANSSSSLDVLNAAKQYKLHQRA 225
+ + + E K I + +
Sbjct: 161 TSTITYKG--ILEIKNNKFRKIKGEFEEFLKNCKFLIVYAEKRKKKTAELVNEVAKIENK 218
Query: 226 AHVYSEAKRVHAFKDTVSSNLSEEDKLKKLGDLMNDSHHSCSVLYECSCPELEELVNVCR 285
++ E +V + L ++ + G LM +H S P+L+ +V++
Sbjct: 219 DEIFKEIDKV------IDEALKIKN-KEDFGKLMTKNHELLKK-LNISTPKLDRIVDIGN 270
Query: 286 NNGALGARLTGAGWGGCVVALVKESIDSQFILNLKEQFYQ 325
G GA+LTGAG GGCV+ LV E + + + L ++ +
Sbjct: 271 RFG-FGAKLTGAGGGGCVIILVNEEKEKELLKELNKEDVR 309
Score = 57.7 bits (140), Expect = 1e-09
Identities = 19/114 (16%), Positives = 36/114 (31%), Gaps = 8/114 (7%)
Query: 7 VIITKFQLFNHINSLFFNL--------GSGLSSSTAFVCSSTVALMAAFGVEVPKKEIAQ 58
I N F + GL SS + + A+ + E+ EIA+
Sbjct: 84 AIKNTLDYLNIEPKTGFKINISSKIPISCGLGSSASITIGTIKAVSGFYNKELKDDEIAK 143
Query: 59 LTCECEQFIGTQSGGMDQAISIMAKSGFAELIDFNPIRTTDVQLPAGGTFVVAH 112
L E+ I ++ D + + F I+ + F++ +
Sbjct: 144 LGYMVEKEIQGKASITDTSTITYKGILEIKNNKFRKIKGEFEEFLKNCKFLIVY 197
>2x7i_A Mevalonate kinase; transferase; HET: CIT; 2.20A {Staphylococcus
aureus}
Length = 308
Score = 101 bits (254), Expect = 7e-25
Identities = 30/111 (27%), Positives = 52/111 (46%), Gaps = 6/111 (5%)
Query: 212 VLNAAKQYKLHQRAAHVYSEAKRVHAFKDTVSSNLSEEDKLKKLGDLMNDSHHSCSVLYE 271
V + K + Q +HV K V D + + L D+ N+ H L
Sbjct: 191 VHDVHKLCEDPQYMSHVKHIGKLVLRASD----VIEHHK-FEALADIFNECHADLKAL-T 244
Query: 272 CSCPELEELVNVCRNNGALGARLTGAGWGGCVVALVKESIDSQFILNLKEQ 322
S ++E+L+ + + NGA+ +LTGAG GG ++ L K+ ++ I+ E+
Sbjct: 245 VSHDKIEQLMKIGKENGAIAGKLTGAGRGGSMLLLAKDLPTAKNIVKAVEK 295
Score = 60.9 bits (148), Expect = 1e-10
Identities = 20/90 (22%), Positives = 28/90 (31%), Gaps = 6/90 (6%)
Query: 25 LGSGLSSSTAFVCSSTVALMAAFGVEVPKKEIAQLTCECEQ-FIGTQSGGMDQAISIMAK 83
GL SS A + A G + K+E+ + EQ G SG Q I
Sbjct: 97 PSRGLGSSAAVAVAFVRASYDFLGKSLTKEELIEKANWAEQIAHGKPSGIDTQTIVSG-- 154
Query: 84 SGFAELIDFNPIRTTDVQLPAGGTFVVAHS 113
+ + L G VV +
Sbjct: 155 -KPVWFQKGHAETLKTLSLD--GYMVVIDT 181
>2hfs_A Mevalonate kinase, putative; GHMP kinase, trypanosomatid parasite,
transferase; 1.75A {Leishmania major} PDB: 2hfu_A*
Length = 332
Score = 99.4 bits (248), Expect = 7e-24
Identities = 41/139 (29%), Positives = 67/139 (48%), Gaps = 24/139 (17%)
Query: 214 NAAKQYKLHQRAAHVYSEAKRVHAFKDTVSSNLSEEDKLKKLGDLMNDSHHSCSVLYECS 273
+ +L+ H+ S+A+ L + D L++LG LMN +H C + + S
Sbjct: 215 QPVQFKRLYDNYTHIVSQAREA----------LQKGD-LQRLGQLMNANHDLCRQI-DVS 262
Query: 274 CPELEELVNVCRNNGALGARLTGAGWGGCVVALVKESIDSQFILN-LKEQFYQSRIDRGV 332
C ELE +V CR GALGA+L+G G GG VAL S I+ LK + +++
Sbjct: 263 CRELESIVQTCRTYGALGAKLSGTGRGGIAVALAASSDQRDAIVKGLKAKCPEAK----- 317
Query: 333 INNNDLGLYVFASKPSSGA 351
++ + +PS+ +
Sbjct: 318 ------FIWRYTVQPSAAS 330
Score = 64.8 bits (158), Expect = 6e-12
Identities = 20/122 (16%), Positives = 42/122 (34%), Gaps = 10/122 (8%)
Query: 25 LGSGLSSSTAFVCSSTVALMAAFGVEVPKKEIAQLTCECEQ-FIGTQSGGMDQAISIMAK 83
SG+ +S + V + + AL + + + +E+ E + GT SG + A +
Sbjct: 108 PSSGIGASASDVVAFSRALSELYQLNLTDEEVNLSAFVGEGGYHGTPSGADNTAAT---- 163
Query: 84 SGFAELIDFNPIRT--TDVQLPAGGTFVVAHSLAESLKAITAASNYNNRVVECRLTAIVL 141
G L ++ + VV + A TA + ++ +
Sbjct: 164 YGGLILYRRQNGKSVFKPIAFQQRLYLVVVGTGI---NASTAKVVNDVHKMKQQQPVQFK 220
Query: 142 AI 143
+
Sbjct: 221 RL 222
>2oi2_A Mevalonate kinase; enzyme-inhibitor complex, transferase; HET: DP6;
2.50A {Streptococcus pneumoniae}
Length = 292
Score = 97.1 bits (242), Expect = 3e-23
Identities = 26/116 (22%), Positives = 47/116 (40%), Gaps = 8/116 (6%)
Query: 212 VLNAAKQYKLHQRAAHVYSEAKRVHAFKDTVSSNLSEEDKLKKLGDLMNDSHHSCSVLYE 271
+ + K H E + +S + LG +++ +H
Sbjct: 179 IQVVQNKGKDALPFLHALGE--LTQQAEIAISQK-----DAEGLGQILSQAHLHLKE-IG 230
Query: 272 CSCPELEELVNVCRNNGALGARLTGAGWGGCVVALVKESIDSQFILNLKEQFYQSR 327
S E + LV ++GALGA+++G G GGC++ALV +Q + E+ +
Sbjct: 231 VSSLEADSLVETALSHGALGAKMSGGGLGGCIIALVTNLTHAQELAERLEEKGAVQ 286
Score = 60.1 bits (146), Expect = 2e-10
Identities = 13/90 (14%), Positives = 30/90 (33%), Gaps = 6/90 (6%)
Query: 25 LGSGLSSSTAFVCSSTVALMAAFGVEVPKKEIAQLTCECEQ-FIGTQSGGMDQAISIMAK 83
G+ SS A ++ A+ + ++P + L E SG +
Sbjct: 85 EKRGMGSSAAISIAAIRAVFDYYQADLPHDVLEILVNRAEMIAHMNPSGLDAKTCLSDQP 144
Query: 84 SGFAELIDFNPIRTTDVQLPAGGTFVVAHS 113
+ + T++++ V+A +
Sbjct: 145 -----IRFIKNVGFTELEMDLSAYLVIADT 169
>3k85_A D-glycero-D-manno-heptose 1-phosphate kinase; bacteriodes
thetaiotaomicron, protein structure initiative II(PSI
II), nysgxrc; 2.28A {Bacteroides thetaiotaomicron}
Length = 357
Score = 86.1 bits (213), Expect = 4e-19
Identities = 21/155 (13%), Positives = 59/155 (38%), Gaps = 7/155 (4%)
Query: 171 CKNGSSDPVFAVKEPYTALDIEKITEEKLTSIFANSSSSLDVLNAAKQYKLHQRAAHVYS 230
+ +D V ++++ + S SS ++N K+ +
Sbjct: 172 MEFLQNDLVIVNPLKMKRWIVDELESSMVLYFTGRSRSSAAIINEQKKNTSEGNQTAI-- 229
Query: 231 EAKRVHAFKDTV--SSNLSEEDKLKKLGDLMNDSHHS-CSVLYECSCPELEELVNVCRNN 287
+ +H K + + + + + ++ + + + + P ++E +V
Sbjct: 230 --EAMHKIKQSAIDTKLALLKGDVGEFARILGEGWENKKKMAGAITNPMIQEAFDVATGA 287
Query: 288 GALGARLTGAGWGGCVVALVKESIDSQFILNLKEQ 322
GA+ +++GAG GG ++ +V+ + + + L
Sbjct: 288 GAMAGKVSGAGGGGFIMFVVEPTRKEEVVRALNNL 322
Score = 51.8 bits (124), Expect = 1e-07
Identities = 16/79 (20%), Positives = 33/79 (41%), Gaps = 1/79 (1%)
Query: 26 GSGLSSSTAFVCSSTVALMAAFGVEVPKKEIAQLTCECEQ-FIGTQSGGMDQAISIMAKS 84
GSGL +S+ V A + + + E ++L E E+ +G G DQ +
Sbjct: 110 GSGLGTSSTMVVCILKAFIEWLSLPLGDYETSRLAYEIERKDLGLSGGKQDQYAAAFGGF 169
Query: 85 GFAELIDFNPIRTTDVQLP 103
+ E + + + +++
Sbjct: 170 NYMEFLQNDLVIVNPLKMK 188
>1kvk_A MK, mevalonate kinase; RMK, ATP, GHMP, transferase; HET: ATP; 2.40A
{Rattus norvegicus} SCOP: d.14.1.5 d.58.26.3 PDB:
2r42_A* 2r3v_A
Length = 395
Score = 74.5 bits (182), Expect = 5e-15
Identities = 21/76 (27%), Positives = 38/76 (50%), Gaps = 2/76 (2%)
Query: 248 EEDKLKKLGDLMNDSHHSCSVLYECSCPELEELVNVCRNNGALGARLTGAGWGGCVVALV 307
++ L +LM+ + H + L L++L V +G L ++LTGAG GGC + L+
Sbjct: 287 VPEQYLVLEELMDMNQHHLNAL-GVGHASLDQLCQVTAAHG-LHSKLTGAGGGGCGITLL 344
Query: 308 KESIDSQFILNLKEQF 323
K ++ + K+
Sbjct: 345 KPGLERAKVEAAKQAL 360
Score = 38.3 bits (88), Expect = 0.003
Identities = 18/104 (17%), Positives = 36/104 (34%), Gaps = 20/104 (19%)
Query: 25 LGSGLSSSTAFVCSSTVALMAAF---------------GVEVPKKEIAQLTCECEQFIGT 69
G+GL SS A+ AL+ A E K I + E E+ I
Sbjct: 139 PGAGLGSSAAYSVCVAAALLTACEEVTNPLKDRGSIGSWPEEDLKSINKWAYEGERVIHG 198
Query: 70 QSGGMDQAISIMAKSGFAELIDFNPIRTTDVQLPAGGTFVVAHS 113
G+D ++S + + + + ++ ++ ++
Sbjct: 199 NPSGVDNSVSTW-----GGALRYQQGKMSSLKRLPALQILLTNT 237
>3k17_A LIN0012 protein; protein structure initiative II(PSI II), NYSGXRC,
structural genomics, NEW YORK SGX research center for
structural genomics; HET: PGE; 2.10A {Listeria innocua}
Length = 365
Score = 63.9 bits (155), Expect = 2e-11
Identities = 13/76 (17%), Positives = 27/76 (35%), Gaps = 6/76 (7%)
Query: 248 EEDKLKKLGDLMNDSHH-----SCSVLYECSCPELEELVNVCRNNGALGARLTGAGWGGC 302
+ L + ++ L+EL + N G + +G+G G C
Sbjct: 263 HTKDEELLYSSIKENRRILQELGTKAGVNIETSLLKELADSAENMGG-AGKSSGSGGGDC 321
Query: 303 VVALVKESIDSQFILN 318
+A K ++ ++N
Sbjct: 322 GIAFSKTKELAEKLVN 337
Score = 49.2 bits (117), Expect = 9e-07
Identities = 13/55 (23%), Positives = 18/55 (32%)
Query: 25 LGSGLSSSTAFVCSSTVALMAAFGVEVPKKEIAQLTCECEQFIGTQSGGMDQAIS 79
GL SS A + ALM F E+ + +L + D A
Sbjct: 113 AKYGLGSSAAATVAVINALMTKFYPEISMLKKFKLAALSHLVVQGNGSCGDIASC 167
>2pg9_A Phosphomevalonate kinase; GHMP kinase superfamily, transferase;
HET: PMV ANP; 1.90A {Streptococcus pneumoniae} PDB:
1k47_A* 3gon_A*
Length = 337
Score = 59.2 bits (143), Expect = 5e-10
Identities = 22/89 (24%), Positives = 40/89 (44%), Gaps = 7/89 (7%)
Query: 248 EEDKLKKLGDLMNDSHHSCSVLY-ECSCPELEELVNVCRNNGALGARLTGAGWGGCVVAL 306
E+ K +K+ + + + L + P L +L ++ A A+ +GAG G C +AL
Sbjct: 246 EQGKSEKIIEQVEVASKLLEGLSTDIYTPLLRQLKEASQDLQA-VAKSSGAGGGDCGIAL 304
Query: 307 VKESIDSQFILN-LK----EQFYQSRIDR 330
++ ++ + N E YQ RI
Sbjct: 305 SFDAQSTKTLKNRWADLGIELLYQERIGH 333
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 59.5 bits (143), Expect = 8e-10
Identities = 63/444 (14%), Positives = 123/444 (27%), Gaps = 155/444 (34%)
Query: 9 ITKFQLFNHINSLFFNL------------GSGLSSSTAFVCSS-TVALMAAFGV------ 49
+++ Q + + L GSG + VC S V F +
Sbjct: 131 VSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLK 190
Query: 50 --EVPKKEIAQLTCECEQFIGTQSGGMDQAISIMAKSGFAELIDFNPIRTTDVQLPAGGT 107
P+ + L Q + D + +I +R
Sbjct: 191 NCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNI-------------KLRI---------- 227
Query: 108 FVVAHSLAESLKAITAASNYNN-----------RVVE-----CR---------LTAIVLA 142
HS+ L+ + + Y N + C+ +T + A
Sbjct: 228 ----HSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSA 283
Query: 143 IKLGMKPQEAISKVKTLSDVEGLCVAF-----------ACKNGSSDP----VFA--VKEP 185
+ S T +V+ L + + ++P + A +++
Sbjct: 284 ATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLT---TNPRRLSIIAESIRDG 340
Query: 186 YTALD-IEKITEEKLTSIFANSSSSLDVLNAAKQYKLHQRAAHVYSEAKRVHAFKDTVS- 243
D + + +KLT+I SSL+VL A+ K+ R + V+ + H +S
Sbjct: 341 LATWDNWKHVNCDKLTTII---ESSLNVLEPAEYRKMFDRLS-VFPPS--AHIPTILLSL 394
Query: 244 --SNLSEED------KLKKLGDLMNDSH------HSCSVLYECSCPELEEL----VN--- 282
++ + D KL K + S + + L V+
Sbjct: 395 IWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYN 454
Query: 283 ----VCRNNGA-----------LGARLTGAGWGGCVVALVKESIDSQFILNLKEQFYQSR 327
++ +G L + ++ L+ + F + +
Sbjct: 455 IPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPE------RMTLFRMVFLDFR--FLEQK 506
Query: 328 I--------DRGVINN--NDLGLY 341
I G I N L Y
Sbjct: 507 IRHDSTAWNASGSILNTLQQLKFY 530
Score = 46.0 bits (108), Expect = 1e-05
Identities = 59/356 (16%), Positives = 107/356 (30%), Gaps = 84/356 (23%)
Query: 2 KGETVVIITKFQLFNHINSLFFNLGSGLSSSTAFVCSSTVALMAAFGVEVPKKEIAQLTC 61
K E +V Q F + L + F LM+ K E Q +
Sbjct: 74 KQEEMV-----QKF---------VEEVLRINYKF-------LMSPI-----KTEQRQPSM 107
Query: 62 ECEQFIGTQSGGMDQAISIMAKSGFAELIDFNPIRTTDVQL-PAGGTFVVAHSLAESLKA 120
+I Q + + AK + L + +R ++L PA V+ + S K
Sbjct: 108 MTRMYI-EQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKN--VLIDGVLGSGKT 164
Query: 121 ITAASNYNNRVVECRLTAIVLAIKLGMKPQEAISKVKTLSDVEGLCVAFACKNGSSDPVF 180
A + V+C++ + + L S L ++ L N +S
Sbjct: 165 WVALDVCLSYKVQCKMDFKIFWLNLK----NCNSPETVLEMLQKLLYQID-PNWTSRSDH 219
Query: 181 AVKEPYTALDIEKITEEKLTSIFANSS--SSLDVL------NAAKQYKLH------QRAA 226
+ I + +L + + + L VL A + L R
Sbjct: 220 SSNIKLRIHSI----QAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFK 275
Query: 227 HVY---SEAKRVHAFKDTVSSNLSEEDKLKKLGDLMNDSHHSCSVLYECSCPEL-EELVN 282
V S A H D S L+ ++ L ++ C +L E
Sbjct: 276 QVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLD-----------CRPQDLPRE--- 321
Query: 283 VCRNN----GALGARLTG--AGWG-----GC--VVALVKESIDSQFILNLKEQFYQ 325
V N + + A W C + +++ S++ ++ F +
Sbjct: 322 VLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDR 377
Score = 35.2 bits (80), Expect = 0.037
Identities = 22/91 (24%), Positives = 39/91 (42%), Gaps = 15/91 (16%)
Query: 189 LDIEKITEEKL---TSIFANSSSSLDVLNAAKQYKLHQRAAHVYSEAKRVHAFKD---TV 242
LD + E+K+ ++ + S S L+ L K YK + E + V+A D +
Sbjct: 498 LDFRFL-EQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYE-RLVNAILDFLPKI 555
Query: 243 SSNL--SEEDKLKKLGDLMNDSHHSCSVLYE 271
NL S+ L ++ LM + ++E
Sbjct: 556 EENLICSKYTDLLRIA-LMAED----EAIFE 581
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 49.7 bits (118), Expect = 1e-06
Identities = 59/345 (17%), Positives = 107/345 (31%), Gaps = 123/345 (35%)
Query: 27 SGLSSSTAFVCSSTVALMAAFG----VEVPKKEIAQL----TCECEQFIGTQSGGMDQ-- 76
S L + V L+A FG + +E+ L I + + +
Sbjct: 143 SALFRA---VGEGNAQLVAIFGGQGNTDDYFEELRDLYQTYHVLVGDLIKFSAETLSELI 199
Query: 77 AISIMAKSGFAELIDF-----NPIRTTDVQLPAGGTFVVAHSLAESLKAI--TAASNYNN 129
++ A+ F + ++ NP T D +++ S+ S I ++Y
Sbjct: 200 RTTLDAEKVFTQGLNILEWLENPSNTPDKD------YLL--SIPISCPLIGVIQLAHY-- 249
Query: 130 RVVECRLTAIVLAIKLGMKPQEAISKVKTLSDV-EGLCVAFACKNGSSDPVFAVKEPYTA 188
VV +L LG P E S +K + +GL A A S F
Sbjct: 250 -VVTAKL--------LGFTPGELRSYLKGATGHSQGLVTAVAIAETDSWESF-------- 292
Query: 189 LDIEKITEEKLTSIFANSSSSLDVLNAAKQYKL----HQRAAHVYSEAKRVHAFKDTVSS 244
F + ++ VL + + ++ + + +D++ +
Sbjct: 293 --------------FVSVRKAITVL-----FFIGVRCYEAYPNTSLPPSIL---EDSLEN 330
Query: 245 N-------LS----EEDKLKKLGDLMN-----DSHHSCSVLYECSCPELEELVNVCRNNG 288
N LS +++++ + N S LVN
Sbjct: 331 NEGVPSPMLSISNLTQEQVQDYVNKTNSHLPAGKQVEIS------------LVN------ 372
Query: 289 ALGAR---LTG--AGWGGCVVALVKESIDSQFILNLKEQFYQSRI 328
GA+ ++G G + L K S L+ QSRI
Sbjct: 373 --GAKNLVVSGPPQSLYGLNLTLRKAKAPSG--LD------QSRI 407
Score = 48.5 bits (115), Expect = 2e-06
Identities = 53/324 (16%), Positives = 98/324 (30%), Gaps = 128/324 (39%)
Query: 65 QFIGTQSGGM---------------DQA-ISIMAKSGF--AELIDFNPIRTTDVQLPAGG 106
Q G+Q GM ++A GF +++ NP+ T
Sbjct: 1624 Q--GSQEQGMGMDLYKTSKAAQDVWNRADNHFKDTYGFSILDIVINNPVNLT-------- 1673
Query: 107 TFVVAHSLAESLKAITAASNYNNRVVECRLTAIVLAIKLGMKPQEAISKVKTLSDVEGLC 166
H E K I NY+ + E + + K+ + E + T +GL
Sbjct: 1674 ----IHFGGEKGKRIRE--NYSAMIFETIVDGKLKTEKIFKEINEHSTSY-TFRSEKGLL 1726
Query: 167 ------------VAFAC-----KNG--SSDPVFA---VKEPYTALDIEKITEEKLTSIFA 204
+ A G +D FA + E Y AL A
Sbjct: 1727 SATQFTQPALTLMEKAAFEDLKSKGLIPADATFAGHSLGE-YAAL--------------A 1771
Query: 205 NSSSSLDVLNAAKQYKLHQRAAHVYSEAKRVHAFKD----------TVSSNLSEEDKLKK 254
+ + + + + + + R + R + V+++ S+E L+
Sbjct: 1772 SLADVMSIESLVEV--VFYRGMTMQVAVPRDELGRSNYGMIAINPGRVAASFSQEA-LQY 1828
Query: 255 LGDLMNDSHHSCSVLYECSCPELEELVN--------VCRNNGALGARLTGAGWGGCVVAL 306
+ + + + L E+VN V G + AL
Sbjct: 1829 V----------VERVGKRT-GWLVEIVNYNVENQQYVA---------------AGDLRAL 1862
Query: 307 VKESIDSQFILN-LKEQFYQSRID 329
+++ + +LN +K Q +ID
Sbjct: 1863 --DTVTN--VLNFIKLQ----KID 1878
>3hul_A HSK, HK, homoserine kinase; structural genomics, putative
homoserine kinase, THRB, amino-acid biosynthesis,
ATP-binding, cytoplasm; 2.19A {Listeria monocytogenes}
Length = 298
Score = 38.8 bits (91), Expect = 0.001
Identities = 13/54 (24%), Positives = 27/54 (50%), Gaps = 2/54 (3%)
Query: 275 PELEELVNVCRNNGALGARLTGAGWGGCVVALVKESIDSQFILNLKEQFYQSRI 328
P L ++ +V +N GA A L+GA G V+ ++ ++ +L+ + +
Sbjct: 225 PHLAQIRDVAKNQGAYAACLSGA--GPTVLVFAPRNLANKLQTSLQTLEIDADV 276
Score = 27.2 bits (61), Expect = 7.6
Identities = 10/40 (25%), Positives = 17/40 (42%)
Query: 25 LGSGLSSSTAFVCSSTVALMAAFGVEVPKKEIAQLTCECE 64
GL SS+A V + + + K+E ++ E E
Sbjct: 82 PARGLGSSSAAVVAGIELANTLAELNLSKEEKVRIAAEIE 121
>1h72_C HK, homoserine kinase; transferase, threonine biosynthesis; HET:
ANP; 1.8A {Methanococcus jannaschii} SCOP: d.14.1.5
d.58.26.1 PDB: 1fwl_A 1fwk_A* 1h73_A* 1h74_A*
Length = 296
Score = 36.1 bits (84), Expect = 0.014
Identities = 10/61 (16%), Positives = 27/61 (44%), Gaps = 6/61 (9%)
Query: 275 PELEELVNVCRNNGALGARLTGAGWGGCVVALVKESIDSQFILNLKEQF---YQSRIDRG 331
P ++ ++ G ++G+ G ++A KE + L++ + ++ + +G
Sbjct: 236 PNYFKIKEEVKD-KVYGITISGS--GPSIIAFPKEEFIDEVENILRDYYENTIRTEVGKG 292
Query: 332 V 332
V
Sbjct: 293 V 293
>3u1k_A Polyribonucleotide nucleotidyltransferase 1, MITO; RNAse PH, KH
domain, exoribonuclease; HET: CIT; 2.13A {Homo sapiens}
Length = 630
Score = 34.0 bits (79), Expect = 0.072
Identities = 10/20 (50%), Positives = 13/20 (65%), Gaps = 1/20 (5%)
Query: 30 SSSTAFVCSSTVALMAAFGV 49
SSS A C ++ALM + GV
Sbjct: 443 SSSMASACGGSLALMDS-GV 461
>3gme_A Polyribonucleotide nucleotidyltransferase; protein-RNA complex,
cytoplasm, nucleotidyltransferase, RNA- binding,
transferase, hydrolase; 2.40A {Escherichia coli E24377A}
PDB: 3gll_A 3gcm_A 3h1c_A 3cdj_A
Length = 549
Score = 34.0 bits (79), Expect = 0.077
Identities = 12/20 (60%), Positives = 15/20 (75%), Gaps = 1/20 (5%)
Query: 30 SSSTAFVCSSTVALMAAFGV 49
SSS A VC +++ALM A GV
Sbjct: 437 SSSMASVCGASLALMDA-GV 455
>3cdi_A Polynucleotide phosphorylase; mRNA turnover, RNAse, RNA
degradation, kinase, transferase; 2.60A {Escherichia
coli} PDB: 1sro_A
Length = 723
Score = 34.0 bits (79), Expect = 0.085
Identities = 13/25 (52%), Positives = 16/25 (64%), Gaps = 1/25 (4%)
Query: 25 LGSGLSSSTAFVCSSTVALMAAFGV 49
S SSS A VC +++ALM A GV
Sbjct: 438 TESNGSSSMASVCGASLALMDA-GV 461
>1e3p_A Guanosine pentaphosphate synthetase; polyribonucleotide
transferase, ATP-GTP diphosphotransferase RNA
processing, RNA degradation; 2.5A {Streptomyces
antibioticus} SCOP: a.4.9.1 b.40.4.5 d.14.1.4 d.14.1.4
d.52.3.1 d.101.1.1 d.101.1.1 PDB: 1e3h_A
Length = 757
Score = 33.7 bits (78), Expect = 0.093
Identities = 13/25 (52%), Positives = 18/25 (72%), Gaps = 1/25 (4%)
Query: 25 LGSGLSSSTAFVCSSTVALMAAFGV 49
LGS S+S VC+ST++L+ A GV
Sbjct: 473 LGSNGSTSMGSVCASTMSLLNA-GV 496
>4aid_A Polyribonucleotide nucleotidyltransferase; transferase-peptide
complex; 2.60A {Caulobacter vibrioides} PDB: 4aim_A
4am3_A
Length = 726
Score = 33.6 bits (78), Expect = 0.096
Identities = 12/20 (60%), Positives = 15/20 (75%), Gaps = 1/20 (5%)
Query: 30 SSSTAFVCSSTVALMAAFGV 49
SSS A VC S++A+M A GV
Sbjct: 453 SSSMATVCGSSLAMMDA-GV 471
>2je6_B RRP41, exosome complex exonuclease 1; nuclease, hydrolase,
exonuclease, phosphorolytic, exoribonuclease, RNA
degradation; HET: 1PE; 1.6A {Sulfolobus solfataricus}
SCOP: d.14.1.4 d.101.1.1 PDB: 2jea_B* 2jeb_B* 2br2_B
2c37_B* 2c38_B* 2c39_B* 3l7z_B
Length = 250
Score = 32.2 bits (74), Expect = 0.20
Identities = 5/20 (25%), Positives = 11/20 (55%), Gaps = 1/20 (5%)
Query: 30 SSSTAFVCSSTVALMAAFGV 49
S + ++++AL A G+
Sbjct: 139 GSRLVSLMAASLALADA-GI 157
>3pyf_A 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; transferase;
HET: ANP; 1.70A {Mycobacterium tuberculosis} PDB:
3pyd_A* 3pye_A* 3pyg_A* 4ed4_A* 4dxl_A* 4emd_A*
Length = 306
Score = 32.1 bits (74), Expect = 0.22
Identities = 8/34 (23%), Positives = 12/34 (35%), Gaps = 2/34 (5%)
Query: 274 CPELEELVNVCRNNGALGARLTGAGWGGCVVALV 307
P L + GAL ++G+ G L
Sbjct: 234 DPALARALRAGVEAGALAGIVSGS--GPTCAFLC 265
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 31.5 bits (70), Expect = 0.22
Identities = 13/49 (26%), Positives = 18/49 (36%), Gaps = 22/49 (44%)
Query: 248 EEDKLKKLGDLMNDSHHSCSV-LYEC-SCPELEELVNVCRNNGALGARL 294
E+ LKKL + S+ LY S P L A+ A +
Sbjct: 18 EKQALKKL-----QA----SLKLYADDSAPAL-----------AIKATM 46
>3m7n_D Probable exosome complex exonuclease 1; exosome, RNA, exonuclease,
hydrolase, nuclease, hydrolase-RN; 2.40A {Archaeoglobus
fulgidus} PDB: 3m85_D 2ba0_F 2ba1_E
Length = 258
Score = 31.9 bits (73), Expect = 0.22
Identities = 9/20 (45%), Positives = 14/20 (70%), Gaps = 1/20 (5%)
Query: 30 SSSTAFVCSSTVALMAAFGV 49
S TA + +++VAL+ A GV
Sbjct: 135 GSRTACLNAASVALVDA-GV 153
>2po1_A Probable exosome complex exonuclease 1; RNAse PH,
hydrolase/hydrolase/RNA complex; 1.94A {Pyrococcus
abyssi} PDB: 2po0_A* 2pnz_A 2po2_A*
Length = 249
Score = 31.5 bits (72), Expect = 0.31
Identities = 5/20 (25%), Positives = 12/20 (60%), Gaps = 1/20 (5%)
Query: 30 SSSTAFVCSSTVALMAAFGV 49
+ A + ++++AL A G+
Sbjct: 135 GTRVAGITAASLALADA-GI 153
>1uek_A 4-(cytidine 5'-diphospho)-2C-methyl-D-erythritol kinase;
non-mevalonate pathway, GHMP superfamily; 1.70A {Thermus
thermophilus} SCOP: d.14.1.5 d.58.26.5
Length = 275
Score = 31.0 bits (71), Expect = 0.53
Identities = 10/34 (29%), Positives = 15/34 (44%), Gaps = 2/34 (5%)
Query: 274 CPELEELVNVCRNNGALGARLTGAGWGGCVVALV 307
PEL+E+ R G G ++G+ G L
Sbjct: 210 FPELKEVRGRMRALGLRGVLMSGS--GSAFFGLA 241
>2nn6_B Exosome complex exonuclease RRP41; RNA, exosome, PM/SCL,
phosphorolytic, hydrolase/transferase complex; 3.35A
{Homo sapiens} SCOP: d.14.1.4 d.101.1.1
Length = 249
Score = 30.3 bits (69), Expect = 0.70
Identities = 6/20 (30%), Positives = 13/20 (65%), Gaps = 1/20 (5%)
Query: 30 SSSTAFVCSSTVALMAAFGV 49
+ A V ++T+A++ A G+
Sbjct: 137 GTYAACVNAATLAVLDA-GI 155
>3hkm_A OS03G0854200 protein; RNAse PH domain, phosphorylase, hydrolase;
1.98A {Oryza sativa japonica group}
Length = 246
Score = 29.3 bits (66), Expect = 1.7
Identities = 7/32 (21%), Positives = 13/32 (40%), Gaps = 2/32 (6%)
Query: 30 SSSTAFVCSSTVALMAAFGVEVPKKEIAQLTC 61
S + + AL+ A G+ + K + C
Sbjct: 114 SLLPCAINACCAALVFA-GIPL-KHLAVAIGC 143
>2wnr_B Probable exosome complex exonuclease 1; phosphate binding, 3'-5'
exoribonuclease, hydrolase; 2.65A {Methanothermobacter
thermautotrophicusorganism_taxid}
Length = 240
Score = 29.1 bits (66), Expect = 2.0
Identities = 5/17 (29%), Positives = 10/17 (58%)
Query: 30 SSSTAFVCSSTVALMAA 46
+ A + +++VAL A
Sbjct: 135 GTRCAGITAASVALADA 151
>3edp_A LIN2111 protein; APC88337, listeria innocua CLIP11262, structural
GE PSI-2, protein structure initiative, midwest center
for STR genomics, MCSG; 2.09A {Listeria innocua}
Length = 236
Score = 28.8 bits (65), Expect = 2.3
Identities = 11/62 (17%), Positives = 22/62 (35%), Gaps = 8/62 (12%)
Query: 106 GTFVVAHSLAESLKAIT------AASNYNNRVVECRLTAI--VLAIKLGMKPQEAISKVK 157
G +V A+++ +T N + + + A GMK E + +K
Sbjct: 70 GLYVQPKLTAQNILEMTGVMKNDTNENLKKDIKDFYIRKAGKFYAEIFGMKENELVYSIK 129
Query: 158 TL 159
+
Sbjct: 130 FV 131
>2v8p_A 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase;
nucleotide-binding, isoprene biosynthesis, transferase,
ATP-binding, non-mevalonate; HET: CDP ADP; 2.1A {Aquifex
aeolicus} PDB: 2v2v_A* 2v2q_A* 2v34_A* 2v2z_A* 2vf3_A*
Length = 271
Score = 28.7 bits (65), Expect = 2.5
Identities = 7/47 (14%), Positives = 16/47 (34%), Gaps = 3/47 (6%)
Query: 274 CPELEELVNVCRNNGALGARLTGAGWGGCVVALVKESIDSQFILNLK 320
PE+ E+ ++G+ G V S + + ++
Sbjct: 219 YPEINEVYRFVEY-LGFKPFVSGS--GSTVYFFGGASEELKKAAKMR 262
>1oys_A Ribonuclease PH; transferase, tRNA processing; 2.40A {Bacillus
subtilis} SCOP: d.14.1.4 d.101.1.1 PDB: 1oyp_A 1oyr_A
Length = 245
Score = 28.8 bits (65), Expect = 2.6
Identities = 6/29 (20%), Positives = 12/29 (41%)
Query: 30 SSSTAFVCSSTVALMAAFGVEVPKKEIAQ 58
+ TA + + +A+ A G + I
Sbjct: 124 GTRTASITGAFLAMAIAIGKLIKAGTIKT 152
>2ek5_A Predicted transcriptional regulators; helix-turn-helix, interwined
alpha helices; 2.20A {Corynebacterium glutamicum atcc
13032} PDB: 2du9_A
Length = 129
Score = 27.5 bits (61), Expect = 3.7
Identities = 10/61 (16%), Positives = 22/61 (36%), Gaps = 7/61 (11%)
Query: 106 GTFVVAHSLAESLKAITAASNYNNRVVECRLTAIV-LAIKLGMKPQEAISKVKTLSDVEG 164
G FV A + A + + + ++ +I LG + + +++ G
Sbjct: 65 GMFVSAQAPALIRE------RRDAAFAATYVAPLIDESIHLGFTRARIHALLDQVAESRG 118
Query: 165 L 165
L
Sbjct: 119 L 119
>2nn6_F MTR3, exosome component 6; RNA, exosome, PM/SCL, phosphorolytic,
hydrolase/transferase complex; 3.35A {Homo sapiens}
SCOP: d.14.1.4 d.101.1.1
Length = 272
Score = 28.3 bits (63), Expect = 4.0
Identities = 8/24 (33%), Positives = 14/24 (58%), Gaps = 1/24 (4%)
Query: 30 SSSTAFVCSSTVALMAAFGVEVPK 53
S+ A + ++ +AL A GVE+
Sbjct: 156 SALAAALTAAALALADA-GVEMYD 178
>2wp8_B Exosome complex component SKI6; nucleus, hydrolase, RNA-binding,
exonucle binding, mitochondrion, rRNA processing; 3.00A
{Saccharomyces cerevisiae}
Length = 246
Score = 27.3 bits (61), Expect = 6.5
Identities = 5/24 (20%), Positives = 11/24 (45%), Gaps = 1/24 (4%)
Query: 30 SSSTAFVCSSTVALMAAFGVEVPK 53
+ + T+AL+ A G+ +
Sbjct: 134 GIMGSLINGITLALIDA-GISMFD 156
>2ygq_A WIF-1, WNT inhibitory factor 1; signaling protein, WNT signaling
pathway, WNT antagonist, MO cancer, glycosaminoglycan;
HET: PCF NAG FUC SCR; 3.95A {Homo sapiens}
Length = 324
Score = 27.1 bits (60), Expect = 9.8
Identities = 7/34 (20%), Positives = 8/34 (23%), Gaps = 8/34 (23%)
Query: 263 HHSCSVLYECSCP--------ELEELVNVCRNNG 288
C C CP + C N G
Sbjct: 190 GGLCVTPGFCICPPGFYGVNCDKANCSTTCFNGG 223
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.318 0.131 0.372
Gapped
Lambda K H
0.267 0.0837 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 5,215,156
Number of extensions: 307086
Number of successful extensions: 742
Number of sequences better than 10.0: 1
Number of HSP's gapped: 704
Number of HSP's successfully gapped: 61
Length of query: 356
Length of database: 6,701,793
Length adjustment: 95
Effective length of query: 261
Effective length of database: 4,049,298
Effective search space: 1056866778
Effective search space used: 1056866778
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 58 (25.9 bits)