Query 018398
Match_columns 356
No_of_seqs 265 out of 1806
Neff 8.8
Searched_HMMs 46136
Date Fri Mar 29 08:41:14 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018398.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/018398hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK11272 putative DMT superfam 99.9 1.6E-24 3.6E-29 201.0 31.1 228 118-356 10-238 (292)
2 PLN00411 nodulin MtN21 family 99.9 2.8E-24 6E-29 203.5 28.7 241 113-356 10-281 (358)
3 PRK11689 aromatic amino acid e 99.9 2.1E-24 4.5E-29 200.6 26.5 227 116-356 4-240 (295)
4 PRK11453 O-acetylserine/cystei 99.9 1.3E-23 2.7E-28 195.7 27.8 230 118-356 6-240 (299)
5 TIGR00950 2A78 Carboxylate/Ami 99.9 2.2E-23 4.7E-28 190.2 26.7 214 128-356 1-217 (260)
6 TIGR00688 rarD rarD protein. T 99.9 1.6E-22 3.4E-27 184.2 27.8 224 116-356 2-233 (256)
7 PRK10532 threonine and homoser 99.9 5.6E-22 1.2E-26 184.1 28.5 224 115-356 11-234 (293)
8 PRK15430 putative chlorampheni 99.9 8.2E-22 1.8E-26 183.3 27.5 226 114-356 6-238 (296)
9 TIGR03340 phn_DUF6 phosphonate 99.9 3E-20 6.6E-25 171.5 27.0 228 118-356 3-236 (281)
10 PF06027 DUF914: Eukaryotic pr 99.9 4.1E-20 9E-25 171.8 26.4 231 121-355 19-257 (334)
11 PTZ00343 triose or hexose phos 99.9 1.7E-19 3.7E-24 171.2 28.1 221 129-356 62-301 (350)
12 TIGR00817 tpt Tpt phosphate/ph 99.9 6.7E-19 1.4E-23 164.3 27.6 178 132-315 18-199 (302)
13 COG0697 RhaT Permeases of the 99.8 9.5E-18 2.1E-22 154.7 29.4 232 115-356 6-240 (292)
14 KOG4510 Permease of the drug/m 99.8 1.9E-21 4E-26 169.3 -0.4 231 115-354 37-276 (346)
15 COG2962 RarD Predicted permeas 99.7 2.3E-15 4.9E-20 134.1 25.0 225 115-355 6-235 (293)
16 COG5006 rhtA Threonine/homoser 99.7 4.6E-15 1E-19 128.8 23.1 223 117-356 13-235 (292)
17 COG2510 Predicted membrane pro 99.7 1.4E-16 3.1E-21 124.0 11.2 133 117-250 4-139 (140)
18 TIGR00776 RhaT RhaT L-rhamnose 99.7 1.2E-14 2.6E-19 134.6 24.5 221 117-353 2-233 (290)
19 KOG2765 Predicted membrane pro 99.6 1E-14 2.2E-19 133.4 15.5 242 110-352 8-339 (416)
20 KOG2766 Predicted membrane pro 99.6 2.1E-16 4.5E-21 137.1 1.2 189 121-314 24-216 (336)
21 PF00892 EamA: EamA-like trans 99.6 2.3E-14 5E-19 115.3 11.6 123 126-249 1-125 (126)
22 TIGR00950 2A78 Carboxylate/Ami 99.5 3.6E-12 7.9E-17 116.1 17.9 131 115-245 127-259 (260)
23 PF08449 UAA: UAA transporter 99.4 8.1E-11 1.8E-15 109.8 25.3 211 143-356 31-250 (303)
24 PRK10532 threonine and homoser 99.4 2.9E-11 6.2E-16 112.4 19.0 137 115-252 147-283 (293)
25 PF13536 EmrE: Multidrug resis 99.3 2.9E-11 6.3E-16 96.0 11.7 104 149-253 2-109 (113)
26 PRK11272 putative DMT superfam 99.3 1.2E-10 2.6E-15 108.1 17.7 137 115-252 149-287 (292)
27 PRK11689 aromatic amino acid e 99.3 2.6E-10 5.5E-15 106.1 17.2 134 115-252 155-289 (295)
28 PF04142 Nuc_sug_transp: Nucle 99.2 2.5E-09 5.3E-14 96.3 20.5 172 173-345 13-200 (244)
29 PRK11453 O-acetylserine/cystei 99.2 1.4E-09 3E-14 101.4 18.6 138 115-252 142-289 (299)
30 PLN00411 nodulin MtN21 family 99.2 7.6E-10 1.6E-14 105.2 17.0 136 115-252 188-330 (358)
31 TIGR03340 phn_DUF6 phosphonate 99.1 7.5E-10 1.6E-14 102.2 12.1 134 115-248 143-281 (281)
32 TIGR00817 tpt Tpt phosphate/ph 99.0 4.7E-09 1E-13 97.9 14.3 138 115-252 144-295 (302)
33 KOG1441 Glucose-6-phosphate/ph 99.0 8.7E-09 1.9E-13 95.2 15.5 180 132-317 33-222 (316)
34 COG0697 RhaT Permeases of the 99.0 4E-08 8.6E-13 90.4 18.3 135 115-251 153-288 (292)
35 PRK15430 putative chlorampheni 99.0 1.8E-08 4E-13 93.7 15.9 132 120-252 153-287 (296)
36 KOG2234 Predicted UDP-galactos 98.9 1.8E-06 3.8E-11 79.8 26.3 229 116-345 15-269 (345)
37 COG5006 rhtA Threonine/homoser 98.9 5.1E-08 1.1E-12 85.4 14.6 135 112-246 144-278 (292)
38 PRK15051 4-amino-4-deoxy-L-ara 98.9 6.3E-08 1.4E-12 76.3 13.9 70 181-250 40-109 (111)
39 KOG3912 Predicted integral mem 98.9 1.3E-07 2.8E-12 84.0 16.3 182 129-312 16-227 (372)
40 PTZ00343 triose or hexose phos 98.8 2.6E-07 5.5E-12 88.0 17.3 136 115-250 193-348 (350)
41 TIGR00776 RhaT RhaT L-rhamnose 98.8 1.5E-07 3.2E-12 87.3 14.4 129 115-250 151-288 (290)
42 PRK02971 4-amino-4-deoxy-L-ara 98.8 2.6E-07 5.6E-12 74.7 13.6 120 117-252 3-124 (129)
43 KOG1444 Nucleotide-sugar trans 98.7 3.2E-06 6.9E-11 77.0 21.1 213 130-348 26-246 (314)
44 PF03151 TPT: Triose-phosphate 98.7 1.1E-06 2.3E-11 73.3 15.7 130 117-247 1-150 (153)
45 PF06800 Sugar_transport: Suga 98.7 6E-06 1.3E-10 74.6 21.3 167 142-311 10-184 (269)
46 KOG4314 Predicted carbohydrate 98.6 5.4E-07 1.2E-11 76.1 9.7 110 189-301 64-173 (290)
47 PRK13499 rhamnose-proton sympo 98.5 0.00014 3E-09 68.3 26.5 165 113-280 4-191 (345)
48 KOG1443 Predicted integral mem 98.5 4.7E-06 1E-10 75.1 15.7 202 140-347 40-256 (349)
49 KOG1581 UDP-galactose transpor 98.5 2.2E-05 4.9E-10 70.9 18.5 211 143-356 50-266 (327)
50 PF05653 Mg_trans_NIPA: Magnes 98.5 1E-05 2.2E-10 75.1 16.9 123 111-252 2-124 (300)
51 KOG1442 GDP-fucose transporter 98.5 1.1E-06 2.5E-11 77.8 9.8 206 134-345 46-270 (347)
52 KOG1580 UDP-galactose transpor 98.5 2.3E-06 5E-11 74.3 11.2 208 144-355 53-265 (337)
53 PF06027 DUF914: Eukaryotic pr 98.3 3.5E-05 7.7E-10 72.3 15.7 140 112-252 164-307 (334)
54 PRK09541 emrE multidrug efflux 98.2 7E-05 1.5E-09 58.7 12.8 70 183-252 35-105 (110)
55 COG2510 Predicted membrane pro 98.1 3.3E-05 7.2E-10 60.9 9.7 89 264-356 4-92 (140)
56 PF06800 Sugar_transport: Suga 98.0 0.00012 2.5E-09 66.3 13.5 129 113-246 135-267 (269)
57 PF08449 UAA: UAA transporter 98.0 0.0002 4.3E-09 66.9 15.2 135 117-252 155-299 (303)
58 PRK10650 multidrug efflux syst 98.0 0.00025 5.5E-09 55.3 12.7 65 185-249 42-107 (109)
59 COG2076 EmrE Membrane transpor 98.0 6.8E-05 1.5E-09 57.7 9.2 68 183-250 35-103 (106)
60 KOG4510 Permease of the drug/m 98.0 3.7E-06 8E-11 74.4 2.4 137 115-252 190-327 (346)
61 PRK10452 multidrug efflux syst 98.0 8.4E-05 1.8E-09 59.1 9.6 70 183-252 35-105 (120)
62 PF04657 DUF606: Protein of un 97.9 0.00033 7.1E-09 57.4 13.4 129 118-247 3-138 (138)
63 PRK11431 multidrug efflux syst 97.9 0.00016 3.5E-09 56.1 9.9 66 185-250 36-102 (105)
64 COG5070 VRG4 Nucleotide-sugar 97.8 0.00057 1.2E-08 59.2 13.1 212 131-345 21-239 (309)
65 COG2962 RarD Predicted permeas 97.8 0.0018 3.8E-08 58.6 16.3 128 122-252 154-285 (293)
66 PF10639 UPF0546: Uncharacteri 97.8 8E-05 1.7E-09 58.3 6.6 110 122-248 2-112 (113)
67 KOG2765 Predicted membrane pro 97.7 0.00063 1.4E-08 63.3 11.8 141 112-252 243-392 (416)
68 TIGR00688 rarD rarD protein. T 97.6 0.0015 3.4E-08 59.2 14.1 103 120-225 150-255 (256)
69 PF00893 Multi_Drug_Res: Small 97.6 0.00079 1.7E-08 51.2 9.7 58 184-241 35-93 (93)
70 PF00892 EamA: EamA-like trans 97.5 0.00016 3.6E-09 57.4 5.4 79 273-356 1-79 (126)
71 KOG2922 Uncharacterized conser 97.5 0.00065 1.4E-08 62.1 8.8 125 109-252 14-138 (335)
72 COG4975 GlcU Putative glucose 97.3 0.00015 3.2E-09 63.8 3.1 186 117-310 3-196 (288)
73 KOG1581 UDP-galactose transpor 97.3 0.0039 8.5E-08 56.7 11.7 139 111-250 167-313 (327)
74 KOG1441 Glucose-6-phosphate/ph 97.1 0.0016 3.5E-08 60.5 7.9 136 114-251 161-308 (316)
75 TIGR00803 nst UDP-galactose tr 96.9 0.0062 1.3E-07 54.1 9.5 59 189-247 163-221 (222)
76 COG3238 Uncharacterized protei 96.9 0.052 1.1E-06 44.7 13.4 133 116-249 5-145 (150)
77 PF06379 RhaT: L-rhamnose-prot 96.6 0.68 1.5E-05 43.3 23.2 169 112-283 3-193 (344)
78 PRK13499 rhamnose-proton sympo 96.5 0.16 3.5E-06 48.0 16.1 138 112-251 170-342 (345)
79 PF07857 DUF1632: CEO family ( 96.5 0.059 1.3E-06 48.7 12.5 166 117-289 1-209 (254)
80 KOG1580 UDP-galactose transpor 96.5 0.017 3.7E-07 50.6 8.4 137 115-252 171-315 (337)
81 PF03151 TPT: Triose-phosphate 96.0 0.07 1.5E-06 44.0 9.6 54 264-317 1-61 (153)
82 KOG1582 UDP-galactose transpor 95.6 0.2 4.4E-06 45.1 11.2 168 145-316 76-245 (367)
83 KOG1444 Nucleotide-sugar trans 95.1 0.24 5.2E-06 45.7 10.2 136 115-251 156-301 (314)
84 PF04142 Nuc_sug_transp: Nucle 94.6 1.1 2.4E-05 40.4 13.4 128 113-240 111-243 (244)
85 PRK02237 hypothetical protein; 93.8 1 2.2E-05 34.7 9.6 49 202-250 56-105 (109)
86 COG5070 VRG4 Nucleotide-sugar 93.7 0.58 1.3E-05 41.0 9.1 132 117-249 156-295 (309)
87 COG4975 GlcU Putative glucose 93.4 0.011 2.4E-07 52.2 -1.9 128 115-248 151-283 (288)
88 KOG1443 Predicted integral mem 93.3 1.8 3.9E-05 39.8 11.9 133 115-248 163-313 (349)
89 KOG4831 Unnamed protein [Funct 93.1 1 2.2E-05 34.5 8.4 112 119-249 6-124 (125)
90 KOG1582 UDP-galactose transpor 92.1 1.7 3.8E-05 39.3 9.9 110 142-252 218-334 (367)
91 TIGR00803 nst UDP-galactose tr 91.9 2.1 4.5E-05 37.8 10.6 82 208-289 8-111 (222)
92 PF02694 UPF0060: Uncharacteri 91.7 1.5 3.3E-05 33.7 8.0 55 197-251 49-104 (107)
93 KOG1583 UDP-N-acetylglucosamin 91.5 0.9 2E-05 41.2 7.5 157 145-307 34-210 (330)
94 KOG1442 GDP-fucose transporter 89.5 0.46 9.9E-06 43.0 4.0 135 114-249 183-326 (347)
95 PF04657 DUF606: Protein of un 89.0 2.7 5.9E-05 34.3 8.0 86 265-356 3-89 (138)
96 PF07857 DUF1632: CEO family ( 87.6 2.3 5E-05 38.5 7.3 59 111-169 178-248 (254)
97 COG1742 Uncharacterized conser 86.4 5.5 0.00012 30.5 7.5 43 210-252 64-106 (109)
98 KOG1583 UDP-N-acetylglucosamin 85.9 7.9 0.00017 35.3 9.5 132 115-251 163-315 (330)
99 PF04342 DUF486: Protein of un 81.8 22 0.00047 27.4 9.1 51 198-248 55-106 (108)
100 PRK02971 4-amino-4-deoxy-L-ara 81.7 9 0.00019 30.9 7.5 72 263-356 2-73 (129)
101 PF07698 7TM-7TMR_HD: 7TM rece 75.8 50 0.0011 28.2 18.8 38 277-314 116-153 (194)
102 COG4657 RnfA Predicted NADH:ub 72.9 55 0.0012 27.4 9.7 85 221-310 88-185 (193)
103 PF06570 DUF1129: Protein of u 72.5 65 0.0014 28.0 12.2 30 175-205 144-173 (206)
104 KOG3912 Predicted integral mem 71.3 82 0.0018 29.0 11.2 138 112-249 172-333 (372)
105 KOG2766 Predicted membrane pro 70.8 5.5 0.00012 35.9 3.8 138 112-252 162-301 (336)
106 PF05297 Herpes_LMP1: Herpesvi 70.1 1.4 3.1E-05 39.8 0.0 110 199-313 44-159 (381)
107 KOG2234 Predicted UDP-galactos 69.5 1E+02 0.0022 29.2 15.0 136 112-252 179-324 (345)
108 PF06379 RhaT: L-rhamnose-prot 66.4 1.2E+02 0.0026 28.7 14.9 137 113-250 170-340 (344)
109 PF09656 PGPGW: Putative trans 64.3 20 0.00043 24.0 4.6 45 233-287 4-48 (53)
110 KOG4314 Predicted carbohydrate 63.0 50 0.0011 28.7 7.8 139 113-252 132-278 (290)
111 TIGR02865 spore_II_E stage II 61.9 2.2E+02 0.0047 30.4 14.1 44 205-248 11-54 (764)
112 KOG2322 N-methyl-D-aspartate r 57.2 1.3E+02 0.0029 26.8 9.7 34 263-296 195-229 (237)
113 PF11361 DUF3159: Protein of u 54.2 83 0.0018 27.1 7.9 89 190-282 12-100 (187)
114 TIGR00844 c_cpa1 na(+)/h(+) an 51.2 3.4E+02 0.0073 29.1 18.2 17 234-250 176-192 (810)
115 PF04246 RseC_MucC: Positive r 49.4 26 0.00057 28.2 4.0 38 202-240 65-102 (135)
116 COG3169 Uncharacterized protei 48.8 1.2E+02 0.0026 23.1 11.8 32 219-250 84-115 (116)
117 COG3086 RseC Positive regulato 48.2 35 0.00075 27.9 4.3 27 199-225 69-95 (150)
118 PF00689 Cation_ATPase_C: Cati 47.5 1.7E+02 0.0036 24.4 12.0 109 142-250 4-144 (182)
119 PRK11715 inner membrane protei 47.4 2.9E+02 0.0063 27.2 11.8 22 142-163 329-350 (436)
120 COG4858 Uncharacterized membra 46.3 1.4E+02 0.003 25.7 7.7 102 118-225 102-205 (226)
121 PF11023 DUF2614: Protein of u 44.9 74 0.0016 24.8 5.5 25 227-251 5-29 (114)
122 PF07168 Ureide_permease: Urei 43.9 4.1 8.9E-05 37.5 -1.7 123 122-246 2-142 (336)
123 PF05653 Mg_trans_NIPA: Magnes 42.6 1E+02 0.0022 28.7 7.3 64 189-252 224-294 (300)
124 PF06123 CreD: Inner membrane 41.4 3.6E+02 0.0078 26.6 11.9 24 141-164 322-345 (430)
125 PRK10263 DNA translocase FtsK; 40.4 2.6E+02 0.0056 31.6 10.7 15 214-228 86-100 (1355)
126 PF13536 EmrE: Multidrug resis 40.1 49 0.0011 25.5 4.1 26 330-355 34-59 (113)
127 COG4956 Integral membrane prot 38.5 3.4E+02 0.0074 25.4 11.1 61 287-355 74-134 (356)
128 PRK10862 SoxR reducing system 37.8 41 0.00089 27.9 3.5 27 199-225 69-95 (154)
129 PF06123 CreD: Inner membrane 36.8 4.2E+02 0.0092 26.1 15.1 57 224-287 317-375 (430)
130 COG3238 Uncharacterized protei 35.0 2.6E+02 0.0057 23.1 8.1 53 263-315 5-58 (150)
131 PF12811 BaxI_1: Bax inhibitor 34.4 3.7E+02 0.008 24.7 25.6 42 208-249 150-191 (274)
132 TIGR01299 synapt_SV2 synaptic 33.6 6.1E+02 0.013 27.0 15.8 22 226-247 225-246 (742)
133 PRK10209 acid-resistance membr 33.3 3.1E+02 0.0067 23.5 19.0 78 174-252 18-101 (190)
134 PF11139 DUF2910: Protein of u 31.6 3.5E+02 0.0075 23.5 11.8 40 210-249 158-210 (214)
135 PF04156 IncA: IncA protein; 31.4 65 0.0014 27.5 3.8 18 235-252 13-30 (191)
136 PRK10263 DNA translocase FtsK; 30.9 7E+02 0.015 28.4 12.0 6 235-240 116-121 (1355)
137 COG5373 Predicted membrane pro 29.4 7.4E+02 0.016 26.6 23.3 96 132-228 148-249 (931)
138 TIGR02611 conserved hypothetic 29.4 1.7E+02 0.0037 23.2 5.4 44 233-286 28-71 (121)
139 PRK12585 putative monovalent c 29.2 2.9E+02 0.0062 23.9 7.1 18 233-250 5-22 (197)
140 TIGR00927 2A1904 K+-dependent 28.6 8.3E+02 0.018 26.9 11.9 11 54-64 393-403 (1096)
141 PF10754 DUF2569: Protein of u 28.1 3.3E+02 0.0072 22.2 12.2 27 261-287 119-145 (149)
142 TIGR03144 cytochr_II_ccsB cyto 27.1 4.5E+02 0.0098 23.4 16.2 24 263-286 102-125 (243)
143 COG1030 NfeD Membrane-bound se 26.1 6.4E+02 0.014 24.8 11.9 66 184-252 261-326 (436)
144 PRK10631 p-hydroxybenzoic acid 26.0 7.8E+02 0.017 25.8 12.7 43 175-217 400-442 (652)
145 KOG3817 Uncharacterized conser 25.9 4.7E+02 0.01 25.0 8.4 79 128-211 201-284 (452)
146 PF02656 DUF202: Domain of unk 24.4 2.5E+02 0.0055 19.5 5.4 23 261-283 46-68 (73)
147 COG4452 CreD Inner membrane pr 24.3 6.6E+02 0.014 24.3 12.9 38 175-213 323-360 (443)
148 PF11177 DUF2964: Protein of u 23.7 2.6E+02 0.0056 19.4 5.8 45 208-252 14-58 (62)
149 PF07331 TctB: Tripartite tric 23.0 3.8E+02 0.0083 21.2 13.7 30 193-229 83-112 (141)
150 PF07444 Ycf66_N: Ycf66 protei 22.2 3.3E+02 0.0072 20.1 8.2 13 263-275 11-23 (84)
151 PF04973 NMN_transporter: Nico 22.1 4.8E+02 0.01 21.9 13.9 44 232-284 2-45 (181)
152 PF06570 DUF1129: Protein of u 22.0 5.2E+02 0.011 22.3 12.4 11 335-345 185-195 (206)
153 CHL00196 psbY photosystem II p 21.7 1.3E+02 0.0027 18.4 2.6 19 264-282 7-25 (36)
154 PF04632 FUSC: Fusaric acid re 21.3 9E+02 0.019 24.8 11.5 51 175-227 387-437 (650)
155 PF11833 DUF3353: Protein of u 21.0 5.5E+02 0.012 22.2 9.2 44 267-311 119-162 (194)
156 PRK10213 nepI ribonucleoside t 21.0 7.1E+02 0.015 23.5 17.6 48 202-249 52-101 (394)
157 PF05366 Sarcolipin: Sarcolipi 20.7 1.7E+02 0.0036 16.7 2.8 19 209-227 9-27 (31)
158 PF06946 Phage_holin_5: Phage 20.6 3.8E+02 0.0083 20.2 6.8 24 224-247 24-47 (93)
159 TIGR02230 ATPase_gene1 F0F1-AT 20.2 1.8E+02 0.0038 22.3 3.9 33 214-246 54-86 (100)
160 TIGR00847 ccoS cytochrome oxid 20.1 2.2E+02 0.0049 18.8 3.8 25 331-355 5-29 (51)
No 1
>PRK11272 putative DMT superfamily transporter inner membrane protein; Provisional
Probab=99.95 E-value=1.6e-24 Score=201.03 Aligned_cols=228 Identities=25% Similarity=0.410 Sum_probs=190.0
Q ss_pred HHHHHHHHHHHHHHHHHHhhhccCCCHHHHHHHHHHHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHHHHHHHHHHHH
Q 018398 118 WAVLVSPFFFWGTAMVAMKEVLPKAGTFFVAAFRLIPAGLLLITFASSQGRKLPSGFNAWVSIFLFALVDASCFQGFLAQ 197 (356)
Q Consensus 118 ~l~ll~aa~~~~~~~~~~k~~~~~~~p~~~~~~r~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 197 (356)
.+.++...++||++++..|...++++|.+++++|+..+.++++++...++++. .+++++......|.++...++.++++
T Consensus 10 ~~~~~~~~~iWg~~~~~~K~~~~~~~p~~~~~~R~~~a~l~ll~~~~~~~~~~-~~~~~~~~~~~~g~~~~~~~~~~~~~ 88 (292)
T PRK11272 10 FGALFALYIIWGSTYLVIRIGVESWPPLMMAGVRFLIAGILLLAFLLLRGHPL-PTLRQWLNAALIGLLLLAVGNGMVTV 88 (292)
T ss_pred HHHHHHHHHHHhhHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHHhCCCC-CcHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45678889999999999999888999999999999999999988877655443 34577888888888877777888999
Q ss_pred Hh-hccChhHHHHHHhhHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHhhccCCCCCCCchhhHHHHHHHHHHHHHH
Q 018398 198 GL-QRTSAGLGSVIIDSQPLSVAVLAALLFGESIGLVGAGGLVLGVIGLLLLEAPAFDESNSSLWGSGEWWMLLAAQSMA 276 (356)
Q Consensus 198 al-~~~~~~~a~~i~~l~pv~~~il~~~~l~e~~~~~~~~g~~l~~~Gv~ll~~~~~~~~~~~~~~~G~llaLlaa~~~a 276 (356)
+. ++++++.++++.++.|+++++++++ +|||+++++++|++++++|+.++..++. . +....|++++++++++|+
T Consensus 89 ~~~~~~~a~~a~~l~~~~Pl~~~lla~~-~~e~~~~~~~~~~~la~~Gv~ll~~~~~-~---~~~~~G~l~~l~a~~~~a 163 (292)
T PRK11272 89 AEHQNVPSGIAAVVVATVPLFTLCFSRL-FGIRTRKLEWLGIAIGLAGIVLLNSGGN-L---SGNPWGAILILIASASWA 163 (292)
T ss_pred HHHccCcHHHHHHHHHHHHHHHHHHHHH-hcccCchhHHHHHHHHHHhHHHHhcCcc-c---ccchHHHHHHHHHHHHHH
Confidence 99 9999999999999999999999975 6999999999999999999998875431 1 122469999999999999
Q ss_pred HHHHHHhhhccCCChHHHHHHHHHHHHHHHHHHHHhhcCCCCCcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCC
Q 018398 277 VGTVMVRWVSKYSDPVMATGWHMVIGGLPLMVISVLNHDPVYGESVKELTSSDILALLYTSIFGSAISYGVYFYSATKGK 356 (356)
Q Consensus 277 ~~~v~~r~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lgi~~s~l~~~l~~~al~~~g 356 (356)
+|.+..|+..++ ++...+++++.++.+...+.....+.+. ....+...|..++++++++++++|.+|++++++.+
T Consensus 164 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~i~~l~i~~s~~~~~l~~~~~~~~~ 238 (292)
T PRK11272 164 FGSVWSSRLPLP-VGMMAGAAEMLAAGVVLLIASLLSGERL----TALPTLSGFLALGYLAVFGSIIAISAYMYLLRNVR 238 (292)
T ss_pred HHHHHHHhcCCC-cchHHHHHHHHHHHHHHHHHHHHcCCcc----cccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 999999998654 4456677888888888777766543321 12246678999999999999999999999999875
No 2
>PLN00411 nodulin MtN21 family protein; Provisional
Probab=99.94 E-value=2.8e-24 Score=203.47 Aligned_cols=241 Identities=15% Similarity=0.140 Sum_probs=190.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhhhccC-CCHHHHHHHHHHHHHHHHHHHHHHhCC--CCC-CChHHHHHHHHHHHHHH
Q 018398 113 GMLLEWAVLVSPFFFWGTAMVAMKEVLPK-AGTFFVAAFRLIPAGLLLITFASSQGR--KLP-SGFNAWVSIFLFALVDA 188 (356)
Q Consensus 113 ~~~~g~l~ll~aa~~~~~~~~~~k~~~~~-~~p~~~~~~r~~~~~l~~~~~~~~~~~--~~~-~~~~~~~~~~~~g~~~~ 188 (356)
++.+.++.+++..+.++...++.|.+.+. ++|..+.++|+.+++++++++.+.+++ +.+ ..++++..+.+.|+++
T Consensus 10 ~~~~~~~~~~~~q~~~~~~~~~~k~a~~~G~~~~~~~~~R~~iA~l~Ll~~~~~~~~~~~~~~~~~~~~~~l~l~g~~g- 88 (358)
T PLN00411 10 REAVFLTAMLATETSVVGISTLFKVATSKGLNIYPFLGYSYLLASLLLLPSLFFTNRSRSLPPLSVSILSKIGLLGFLG- 88 (358)
T ss_pred hccchHHHHHHHHHHHHHHHHHHHHHHHCCCCccHHHHHHHHHHHHHHHHHHHHHHHhcccCcchHHHHHHHHHHHHHH-
Confidence 34567899999999999999999988874 999999999999999999998876543 222 2467788889999988
Q ss_pred HHHHHHHHHHhhccChhHHHHHHhhHHHHHHHHHHHH------hCCCCcHHHHHHHHHHHHHHHHhhccCCC--------
Q 018398 189 SCFQGFLAQGLQRTSAGLGSVIIDSQPLSVAVLAALL------FGESIGLVGAGGLVLGVIGLLLLEAPAFD-------- 254 (356)
Q Consensus 189 ~~~~~~~~~al~~~~~~~a~~i~~l~pv~~~il~~~~------l~e~~~~~~~~g~~l~~~Gv~ll~~~~~~-------- 254 (356)
+.++.+++.+++++++++++++.++.|+++.++++++ +|||+++.+++|++++++|+.++...+..
T Consensus 89 ~~~~~~~~~gl~~tsa~~asll~~~~P~~~~lla~~~~~e~~~~~er~~~~~~~G~~l~~~Gv~ll~~~~g~~~~~~~~~ 168 (358)
T PLN00411 89 SMYVITGYIGIEYSNPTLASAISNITPALTFILAIIFRMEKVSFKERSSVAKVMGTILSLIGALVVIFYHGPRVFVASSP 168 (358)
T ss_pred HHHHHHHHHHHhhccHHHHHHHHHhhHHHHHHHHHHHHhchhhhcccccHHHHHHHHHHHHHHHHHHHccCccccccccc
Confidence 6777899999999999999999999999999999999 69999999999999999999988753211
Q ss_pred ------------CCCCchhhHHHHHHHHHHHHHHHHHHHHhhhccCCChH-HHHHHHHHHHHHHHHHHHHhhcCCCCCcc
Q 018398 255 ------------ESNSSLWGSGEWWMLLAAQSMAVGTVMVRWVSKYSDPV-MATGWHMVIGGLPLMVISVLNHDPVYGES 321 (356)
Q Consensus 255 ------------~~~~~~~~~G~llaLlaa~~~a~~~v~~r~~~~~~~~~-~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 321 (356)
..+..+...|++++++++++|++|+++.|+..+++++. ..+++++.++.+...+..+..++......
T Consensus 169 ~~~~~~~~~~~~~~~~~~~~lG~~l~l~aa~~wa~~~il~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~l~~~~~~~~~~ 248 (358)
T PLN00411 169 PYLNFRQLSPPLSSSNSDWLIGGALLTIQGIFVSVSFILQAHIMSEYPAAFTVSFLYTVCVSIVTSMIGLVVEKNNPSVW 248 (358)
T ss_pred ccccccccccccCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHhHHHHHHHHHHHHHHHHHHHHHccCCcccc
Confidence 01112345699999999999999999999988777654 56677788777777766666543221111
Q ss_pred cccCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCC
Q 018398 322 VKELTSSDILALLYTSIFGSAISYGVYFYSATKGK 356 (356)
Q Consensus 322 ~~~~~~~~~~~~~~lgi~~s~l~~~l~~~al~~~g 356 (356)
....+.. ...++|.+++ +.++|.+|++++++.|
T Consensus 249 ~~~~~~~-~~~i~y~~i~-t~lay~lw~~~v~~~g 281 (358)
T PLN00411 249 IIHFDIT-LITIVTMAII-TSVYYVIHSWTVRHKG 281 (358)
T ss_pred eeccchH-HHHHHHHHHH-HHHHHHHHHHHHhccC
Confidence 1223433 3457788865 6789999999999875
No 3
>PRK11689 aromatic amino acid exporter; Provisional
Probab=99.94 E-value=2.1e-24 Score=200.59 Aligned_cols=227 Identities=17% Similarity=0.121 Sum_probs=173.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhccCCCHHHHHHHHHHHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHHHHHHHHHH
Q 018398 116 LEWAVLVSPFFFWGTAMVAMKEVLPKAGTFFVAAFRLIPAGLLLITFASSQGRKLPSGFNAWVSIFLFALVDASCFQGFL 195 (356)
Q Consensus 116 ~g~l~ll~aa~~~~~~~~~~k~~~~~~~p~~~~~~r~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 195 (356)
+++++++++.++||.+++..|...++++|..+.++|+.++.++++++.. +++. +++.++.++.+.+..+.++.++
T Consensus 4 ~~~l~~l~a~~~Wg~~~~~~k~~~~~~~P~~~~~~R~~~a~l~l~~~~~--~~~~---~~~~~~~~~~~~l~~~~~~~~~ 78 (295)
T PRK11689 4 KATLIGLIAILLWSTMVGLIRGVSESLGPVGGAAMIYSVSGLLLLLTVG--FPRL---RQFPKRYLLAGGLLFVSYEICL 78 (295)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHccCChHHHHHHHHHHHHHHHHHHcc--cccc---ccccHHHHHHHhHHHHHHHHHH
Confidence 4578899999999999999999999999999999999999998887641 1111 1223334455566656777777
Q ss_pred HHHhh----ccChhHHHHHHhhHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHhhccCCCCC------CCchhhHHH
Q 018398 196 AQGLQ----RTSAGLGSVIIDSQPLSVAVLAALLFGESIGLVGAGGLVLGVIGLLLLEAPAFDES------NSSLWGSGE 265 (356)
Q Consensus 196 ~~al~----~~~~~~a~~i~~l~pv~~~il~~~~l~e~~~~~~~~g~~l~~~Gv~ll~~~~~~~~------~~~~~~~G~ 265 (356)
+.+++ ++++.+++++.++.|+++++++++++|||+++++++|++++++|++++..++.+.+ +......|+
T Consensus 79 ~~a~~~~~~~~~a~~a~~l~~~~Pi~~~ll~~~~~~e~~~~~~~~g~~l~~~Gv~li~~~~~~~~~~~~~~~~~~~~~G~ 158 (295)
T PRK11689 79 ALSLGYANTRRQAIEVGMVNYLWPSLTILFAVLFNGQKANWLLIPGLLLALAGVAWVLGGDNGLSLAELINNIASNPLSY 158 (295)
T ss_pred HHHHHHhhccccchHHHHHHHHhHHHHHHHHHHHhcCCccHHHHHHHHHHHHhHhheecCCccchhhhhhhccccChHHH
Confidence 77775 46888899999999999999999999999999999999999999999987652111 111224599
Q ss_pred HHHHHHHHHHHHHHHHHhhhccCCChHHHHHHHHHHHHHHHHHHHHhhcCCCCCcccccCCHHHHHHHHHHHHHHHHHHH
Q 018398 266 WWMLLAAQSMAVGTVMVRWVSKYSDPVMATGWHMVIGGLPLMVISVLNHDPVYGESVKELTSSDILALLYTSIFGSAISY 345 (356)
Q Consensus 266 llaLlaa~~~a~~~v~~r~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lgi~~s~l~~ 345 (356)
+++++++++|++|+++.||..++.++..... ..+.+...+.....+.+. ...+...|..+++.+ ++++++|
T Consensus 159 ~~~l~aa~~~A~~~v~~k~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~-----~~~~~~~~~~l~~~~-~~t~~~~ 229 (295)
T PRK11689 159 GLAFIGAFIWAAYCNVTRKYARGKNGITLFF---ILTALALWIKYFLSPQPA-----MVFSLPAIIKLLLAA-AAMGFGY 229 (295)
T ss_pred HHHHHHHHHHHHHHHHHhhccCCCCchhHHH---HHHHHHHHHHHHHhcCcc-----ccCCHHHHHHHHHHH-HHHHHHH
Confidence 9999999999999999999988888765422 223333333333332221 235667888888888 6899999
Q ss_pred HHHHHHhccCC
Q 018398 346 GVYFYSATKGK 356 (356)
Q Consensus 346 ~l~~~al~~~g 356 (356)
.+|++++|+.+
T Consensus 230 ~l~~~al~~~~ 240 (295)
T PRK11689 230 AAWNVGILHGN 240 (295)
T ss_pred HHHHHHHHccC
Confidence 99999999875
No 4
>PRK11453 O-acetylserine/cysteine export protein; Provisional
Probab=99.93 E-value=1.3e-23 Score=195.74 Aligned_cols=230 Identities=21% Similarity=0.314 Sum_probs=173.8
Q ss_pred HHHHHHHHHHHHHHHHHHhhhccCCCHHHHHHHHHHHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHHHHHHHHHHHH
Q 018398 118 WAVLVSPFFFWGTAMVAMKEVLPKAGTFFVAAFRLIPAGLLLITFASSQGRKLPSGFNAWVSIFLFALVDASCFQGFLAQ 197 (356)
Q Consensus 118 ~l~ll~aa~~~~~~~~~~k~~~~~~~p~~~~~~r~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 197 (356)
.++.++++++||.++++.|...++++|..+.++|+.++++.++++..+ ++. + +...+..|++.....+.+++.
T Consensus 6 ~l~~l~~~~~Wg~~~~~~k~~~~~~~p~~~~~~R~~~a~~~l~~~~~~--~~~--~---~~~~~~~g~~~~~~~~~~~~~ 78 (299)
T PRK11453 6 GVLALLVVVVWGLNFVVIKVGLHNMPPLMLAGLRFMLVAFPAIFFVAR--PKV--P---LNLLLGYGLTISFGQFAFLFC 78 (299)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhcC--CCC--c---hHHHHHHHHHHHHHHHHHHHH
Confidence 456789999999999999999999999999999999988776665421 111 1 223444455554556667788
Q ss_pred Hhhc-cChhHHHHHHhhHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHhhccCCCCCCCchhhHHHHHHHHHHHHHH
Q 018398 198 GLQR-TSAGLGSVIIDSQPLSVAVLAALLFGESIGLVGAGGLVLGVIGLLLLEAPAFDESNSSLWGSGEWWMLLAAQSMA 276 (356)
Q Consensus 198 al~~-~~~~~a~~i~~l~pv~~~il~~~~l~e~~~~~~~~g~~l~~~Gv~ll~~~~~~~~~~~~~~~G~llaLlaa~~~a 276 (356)
++++ .++++++++.++.|+++++++++++|||+++++++|++++++|+.++..++.++ ......|++++++++++|+
T Consensus 79 ~~~~~~~a~~a~~l~~~~pi~~~ll~~~~l~e~~~~~~~~~~~l~~~Gv~ll~~~~~~~--~~~~~~G~~l~l~aal~~a 156 (299)
T PRK11453 79 AINFGMPAGLASLVLQAQAFFTIVLGAFTFGERLQGKQLAGIALAIFGVLVLIEDSLNG--QHVAMLGFMLTLAAAFSWA 156 (299)
T ss_pred HHHhcCCHHHHHHHHHhHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHhHHHhccccCCC--cchhHHHHHHHHHHHHHHH
Confidence 9998 588999999999999999999999999999999999999999999998654222 1222469999999999999
Q ss_pred HHHHHHhhhccCCCh---HHHHHHHHHHHHHHHHHHHHhhcCCCC-CcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 018398 277 VGTVMVRWVSKYSDP---VMATGWHMVIGGLPLMVISVLNHDPVY-GESVKELTSSDILALLYTSIFGSAISYGVYFYSA 352 (356)
Q Consensus 277 ~~~v~~r~~~~~~~~---~~~~~~~~~~~~i~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~lgi~~s~l~~~l~~~al 352 (356)
+|.++.|+..++.+. .....+....+.+.........+++.. ...+...+...|..++|+++++++++|.+|++++
T Consensus 157 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~i~~t~~~~~l~~~~l 236 (299)
T PRK11453 157 CGNIFNKKIMSHSTRPAVMSLVVWSALIPIIPFFVASLILDGSATMIHSLVTIDMTTILSLMYLAFVATIVGYGIWGTLL 236 (299)
T ss_pred HHHHHHHHHhcccCccchhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhhccCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999997655443 233445555555444444444333211 0112345778899999999999999999999999
Q ss_pred ccCC
Q 018398 353 TKGK 356 (356)
Q Consensus 353 ~~~g 356 (356)
++.+
T Consensus 237 ~~~~ 240 (299)
T PRK11453 237 GRYE 240 (299)
T ss_pred HhCC
Confidence 8864
No 5
>TIGR00950 2A78 Carboxylate/Amino Acid/Amine Transporter.
Probab=99.93 E-value=2.2e-23 Score=190.16 Aligned_cols=214 Identities=25% Similarity=0.345 Sum_probs=180.7
Q ss_pred HHHHHHHHhhhcc-CCCHHHHHHHHHHHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhhccChhH
Q 018398 128 WGTAMVAMKEVLP-KAGTFFVAAFRLIPAGLLLITFASSQGRKLPSGFNAWVSIFLFALVDASCFQGFLAQGLQRTSAGL 206 (356)
Q Consensus 128 ~~~~~~~~k~~~~-~~~p~~~~~~r~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~al~~~~~~~ 206 (356)
||.+++..|...+ ..++.++.+.|+..+.+++.++...+ .+++++.++...|.++.+.++.++++|++++++++
T Consensus 1 Wg~~~~~~k~~~~~~~~~~~~~~~r~~~~~l~l~~~~~~~-----~~~~~~~~~~~~~~~~~~l~~~~~~~a~~~~~~~~ 75 (260)
T TIGR00950 1 WGTTGVVIGQYLEGQVPLYFAVFRRLIFALLLLLPLLRRR-----PPLKRLLRLLLLGALQIGVFYVLYFVAVKRLPVGE 75 (260)
T ss_pred CcchHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhc-----cCHhHHHHHHHHHHHHHHHHHHHHHHHHHhcChhh
Confidence 8899999999876 48899999999999888888776543 23467778888899888999999999999999999
Q ss_pred HHHHHhhHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHhhccCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHhhhc
Q 018398 207 GSVIIDSQPLSVAVLAALLFGESIGLVGAGGLVLGVIGLLLLEAPAFDESNSSLWGSGEWWMLLAAQSMAVGTVMVRWVS 286 (356)
Q Consensus 207 a~~i~~l~pv~~~il~~~~l~e~~~~~~~~g~~l~~~Gv~ll~~~~~~~~~~~~~~~G~llaLlaa~~~a~~~v~~r~~~ 286 (356)
++++.++.|+++++++++++|||+++++++|++++++|+.++..++ + .+....|++++++++++|+++.+..|+..
T Consensus 76 ~~ii~~~~P~~~~~~~~l~~~e~~~~~~~~gi~i~~~Gv~li~~~~-~---~~~~~~G~~~~l~a~~~~a~~~~~~k~~~ 151 (260)
T TIGR00950 76 AALLLYLAPLYVTLLSDLMGKERPRKLVLLAAVLGLAGAVLLLSDG-N---LSINPAGLLLGLGSGISFALGTVLYKRLV 151 (260)
T ss_pred hHHHHhhhHHHHHHHHHHHccCCCcHHHHHHHHHHHHhHHhhccCC-c---ccccHHHHHHHHHHHHHHHHHHHHHhHHh
Confidence 9999999999999999999999999999999999999999987654 1 12335799999999999999999999988
Q ss_pred cCCChH--HHHHHHHHHHHHHHHHHHHhhcCCCCCcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCC
Q 018398 287 KYSDPV--MATGWHMVIGGLPLMVISVLNHDPVYGESVKELTSSDILALLYTSIFGSAISYGVYFYSATKGK 356 (356)
Q Consensus 287 ~~~~~~--~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lgi~~s~l~~~l~~~al~~~g 356 (356)
++.++. ....+.+.++.++..+.....++.. ..+...|..++++++++++++|.+|++++++.+
T Consensus 152 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~ 217 (260)
T TIGR00950 152 KKEGPELLQFTGWVLLLGALLLLPFAWFLGPNP------QALSLQWGALLYLGLIGTALAYFLWNKGLTLVD 217 (260)
T ss_pred hcCCchHHHHHHHHHHHHHHHHHHHHHhcCCCC------CcchHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 777744 4555678888888888777654332 235677888999999999999999999999865
No 6
>TIGR00688 rarD rarD protein. This uncharacterized protein is predicted to have many membrane-spanning domains.
Probab=99.92 E-value=1.6e-22 Score=184.25 Aligned_cols=224 Identities=13% Similarity=0.018 Sum_probs=163.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhccCCCHHHHHHHHHHHHHHHHHHHHHHhCCC------CC-CChHH-HHHHHHHHHHH
Q 018398 116 LEWAVLVSPFFFWGTAMVAMKEVLPKAGTFFVAAFRLIPAGLLLITFASSQGRK------LP-SGFNA-WVSIFLFALVD 187 (356)
Q Consensus 116 ~g~l~ll~aa~~~~~~~~~~k~~~~~~~p~~~~~~r~~~~~l~~~~~~~~~~~~------~~-~~~~~-~~~~~~~g~~~ 187 (356)
+|+++.++++++||++.++.|.. ++++|.++.++|+.++.++++++...++++ .+ ..+++ +..+...|++
T Consensus 2 ~g~~~~i~a~~~wg~~~~~~k~~-~~~~~~~i~~~R~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~- 79 (256)
T TIGR00688 2 KGIIVSLLASFLFGYMYYYSKLL-KPLPATDILGHRMIWSFPFMLLSVTLFRQWAALIERLKRIQKRPLILSLLLCGLL- 79 (256)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHh-ccCCHHHHHHHHHHHHHHHHHHHHHHHcchHHHHHHHhCcccchHHHHHHHHHHH-
Confidence 37889999999999999999984 569999999999999998887776443321 11 11233 3344555555
Q ss_pred HHHHHHHHHHHhhccChhHHHHHHhhHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHhhccCCCCCCCchhhHHHHH
Q 018398 188 ASCFQGFLAQGLQRTSAGLGSVIIDSQPLSVAVLAALLFGESIGLVGAGGLVLGVIGLLLLEAPAFDESNSSLWGSGEWW 267 (356)
Q Consensus 188 ~~~~~~~~~~al~~~~~~~a~~i~~l~pv~~~il~~~~l~e~~~~~~~~g~~l~~~Gv~ll~~~~~~~~~~~~~~~G~ll 267 (356)
.+.++.++++|++++++++++++.++.|+++++++++++|||++++++++++++++|++++..++. +. .++
T Consensus 80 ~~~~~~~~~~a~~~~~~~~a~~l~~~~Pi~~~lla~~~l~Ek~~~~~~l~~~~~~~Gv~li~~~~~-----~~----~~~ 150 (256)
T TIGR00688 80 IGFNWWLFIWAVNNGSSLEVSLGYLINPLVMVALGRVFLKERISRFQFIAVIIATLGVISNIVLKG-----SL----PWE 150 (256)
T ss_pred HHHHHHHHHHHHHcchHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHcC-----Cc----hHH
Confidence 478899999999999999999999999999999999999999999999999999999998876431 11 146
Q ss_pred HHHHHHHHHHHHHHHhhhccCCChHHHHHHHHHHHHHHHHHHHHhhcCCCCCcccccCCHHHHHHHHHHHHHHHHHHHHH
Q 018398 268 MLLAAQSMAVGTVMVRWVSKYSDPVMATGWHMVIGGLPLMVISVLNHDPVYGESVKELTSSDILALLYTSIFGSAISYGV 347 (356)
Q Consensus 268 aLlaa~~~a~~~v~~r~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lgi~~s~l~~~l 347 (356)
+++++++|++|.+..|+..++ +....... .+.......+.....+.+.. ........|..++++|++ +.++|.+
T Consensus 151 ~l~aa~~~a~~~i~~~~~~~~-~~~~~~~~-~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~l~~~g~~-t~i~~~l 224 (256)
T TIGR00688 151 ALVLAFSFTAYGLIRKALKNT-DLAGFCLE-TLSLMPVAIYYLLQTDFATV---QQTNPFPIWLLLVLAGLI-TGTPLLA 224 (256)
T ss_pred HHHHHHHHHHHHHHHhhcCCC-CcchHHHH-HHHHHHHHHHHHHHhccCcc---cccCchhHHHHHHHHHHH-HHHHHHH
Confidence 789999999999999998653 33222211 12222222222222121110 011122478888888865 8999999
Q ss_pred HHHHhccCC
Q 018398 348 YFYSATKGK 356 (356)
Q Consensus 348 ~~~al~~~g 356 (356)
|++++|+.+
T Consensus 225 ~~~a~~~~~ 233 (256)
T TIGR00688 225 FVIAANRLP 233 (256)
T ss_pred HHHHHHcCC
Confidence 999999875
No 7
>PRK10532 threonine and homoserine efflux system; Provisional
Probab=99.91 E-value=5.6e-22 Score=184.10 Aligned_cols=224 Identities=18% Similarity=0.152 Sum_probs=179.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhccCCCHHHHHHHHHHHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHHHHHHHHH
Q 018398 115 LLEWAVLVSPFFFWGTAMVAMKEVLPKAGTFFVAAFRLIPAGLLLITFASSQGRKLPSGFNAWVSIFLFALVDASCFQGF 194 (356)
Q Consensus 115 ~~g~l~ll~aa~~~~~~~~~~k~~~~~~~p~~~~~~r~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 194 (356)
.+++.+++++.++|+.+..+.|++.++++|.++.++|+.++.++++++...++. +.+++++...+..|++. +..+.+
T Consensus 11 ~~~~~~~~la~~~~~~~~~~~K~~~~~~~~~~~~~~R~~~a~l~l~~~~~~~~~--~~~~~~~~~~~~~g~~~-~~~~~~ 87 (293)
T PRK10532 11 WLPILLLLIAMASIQSGASLAKSLFPLVGAPGVTALRLALGTLILIAIFKPWRL--RFAKEQRLPLLFYGVSL-GGMNYL 87 (293)
T ss_pred chHHHHHHHHHHHHHhhHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHhHHhc--cCCHHHHHHHHHHHHHH-HHHHHH
Confidence 568999999999999999999999999999999999999999998877644332 23457777777888775 777888
Q ss_pred HHHHhhccChhHHHHHHhhHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHhhccCCCCCCCchhhHHHHHHHHHHHH
Q 018398 195 LAQGLQRTSAGLGSVIIDSQPLSVAVLAALLFGESIGLVGAGGLVLGVIGLLLLEAPAFDESNSSLWGSGEWWMLLAAQS 274 (356)
Q Consensus 195 ~~~al~~~~~~~a~~i~~l~pv~~~il~~~~l~e~~~~~~~~g~~l~~~Gv~ll~~~~~~~~~~~~~~~G~llaLlaa~~ 274 (356)
+++++++++++.++++.++.|+++.+++ +|++.+ ..++.++++|++++..++.+..+ ....|++++++++++
T Consensus 88 ~~~al~~~~~~~a~~l~~t~Pi~~~ll~----~~~~~~--~~~~~i~~~Gv~li~~~~~~~~~--~~~~G~ll~l~aa~~ 159 (293)
T PRK10532 88 FYLSIQTVPLGIAVALEFTGPLAVALFS----SRRPVD--FVWVVLAVLGLWFLLPLGQDVSH--VDLTGAALALGAGAC 159 (293)
T ss_pred HHHHHhcccHHHHHHHHHHHHHHHHHHh----cCChHH--HHHHHHHHHHHheeeecCCCccc--CChHHHHHHHHHHHH
Confidence 9999999999999999999999998887 366554 45667889999988754422221 224699999999999
Q ss_pred HHHHHHHHhhhccCCChHHHHHHHHHHHHHHHHHHHHhhcCCCCCcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 018398 275 MAVGTVMVRWVSKYSDPVMATGWHMVIGGLPLMVISVLNHDPVYGESVKELTSSDILALLYTSIFGSAISYGVYFYSATK 354 (356)
Q Consensus 275 ~a~~~v~~r~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lgi~~s~l~~~l~~~al~~ 354 (356)
|++|.+..|+..++.++... .+..++++++..++....+.. ...+...|..++|+|+++++++|.+|+++++|
T Consensus 160 ~a~~~v~~r~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~------~~~~~~~~~~~l~lgv~~t~~~~~l~~~~~~~ 232 (293)
T PRK10532 160 WAIYILSGQRAGAEHGPATV-AIGSLIAALIFVPIGALQAGE------ALWHWSILPLGLAVAILSTALPYSLEMIALTR 232 (293)
T ss_pred HHHHHHHHHHHhccCCchHH-HHHHHHHHHHHHHHHHHccCc------ccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999888888776 466677777777766654321 22456677778899999999999999999998
Q ss_pred CC
Q 018398 355 GK 356 (356)
Q Consensus 355 ~g 356 (356)
.+
T Consensus 233 ~~ 234 (293)
T PRK10532 233 LP 234 (293)
T ss_pred cC
Confidence 75
No 8
>PRK15430 putative chloramphenical resistance permease RarD; Provisional
Probab=99.91 E-value=8.2e-22 Score=183.29 Aligned_cols=226 Identities=15% Similarity=0.094 Sum_probs=163.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhhccCCCHHHHHHHHHHHHHHHHHHHHHHhCCCCC-----CChHHHHHHHHHHHHHH
Q 018398 114 MLLEWAVLVSPFFFWGTAMVAMKEVLPKAGTFFVAAFRLIPAGLLLITFASSQGRKLP-----SGFNAWVSIFLFALVDA 188 (356)
Q Consensus 114 ~~~g~l~ll~aa~~~~~~~~~~k~~~~~~~p~~~~~~r~~~~~l~~~~~~~~~~~~~~-----~~~~~~~~~~~~g~~~~ 188 (356)
+.+|.++.++++++||.+++..|.. ++++|.++.++|+.++.++++++...+++... .+++++ .....+.++.
T Consensus 6 ~~~g~~~~l~a~~~wg~~~~~~k~~-~~~~~~~~~~~R~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 83 (296)
T PRK15430 6 TRQGVLLALAAYFIWGIAPAYFKLI-YYVPADEILTHRVIWSFFFMVVLMSICRQWSYLKTLIQTPQKI-FMLAVSAVLI 83 (296)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHh-cCCCHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHcCHHHH-HHHHHHHHHH
Confidence 3678999999999999999999986 57999999999999999888777655432111 122333 2334666777
Q ss_pred HHHHHHHHHHhhccChhHHHHHHhhHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHhhccCCCCCCCchhhHHHHHH
Q 018398 189 SCFQGFLAQGLQRTSAGLGSVIIDSQPLSVAVLAALLFGESIGLVGAGGLVLGVIGLLLLEAPAFDESNSSLWGSGEWWM 268 (356)
Q Consensus 189 ~~~~~~~~~al~~~~~~~a~~i~~l~pv~~~il~~~~l~e~~~~~~~~g~~l~~~Gv~ll~~~~~~~~~~~~~~~G~lla 268 (356)
+.++.++++|++++++++++++.++.|+++++++++++|||+++++++|++++++|++++..++. +. .+++
T Consensus 84 ~~~~~~~~~a~~~~~~~~a~~l~~~~Pi~v~l~~~~~l~E~~~~~~~~g~~l~~~Gv~li~~~~~-----~~----~~~~ 154 (296)
T PRK15430 84 GGNWLLFIWAVNNHHMLEASLGYFINPLVNIVLGMIFLGERFRRMQWLAVILAICGVLVQLWTFG-----SL----PIIA 154 (296)
T ss_pred HHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHcC-----Cc----cHHH
Confidence 88899999999999999999999999999999999999999999999999999999999886431 11 2468
Q ss_pred HHHHHHHHHHHHHHhhhccCCC--hHHHHHHHHHHHHHHHHHHHHhhcCCCCCcccccCCHHHHHHHHHHHHHHHHHHHH
Q 018398 269 LLAAQSMAVGTVMVRWVSKYSD--PVMATGWHMVIGGLPLMVISVLNHDPVYGESVKELTSSDILALLYTSIFGSAISYG 346 (356)
Q Consensus 269 Llaa~~~a~~~v~~r~~~~~~~--~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lgi~~s~l~~~ 346 (356)
++++++|+.|++..|+..++.. ......+...++.+...+. .+.+.. .........+..+++.+ +++.++|.
T Consensus 155 l~aa~~~a~~~i~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~--~~~~~~~~~~~~~~~~g-~~t~i~~~ 228 (296)
T PRK15430 155 LGLAFSFAFYGLVRKKIAVEAQTGMLIETMWLLPVAAIYLFAI---ADSSTS--HMGQNPMSLNLLLIAAG-IVTTVPLL 228 (296)
T ss_pred HHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHHHHHHHH---ccCCcc--cccCCcHHHHHHHHHHH-HHHHHHHH
Confidence 8899999999999999754322 2233334444443332211 111110 01111222333444445 57889999
Q ss_pred HHHHHhccCC
Q 018398 347 VYFYSATKGK 356 (356)
Q Consensus 347 l~~~al~~~g 356 (356)
+|++++++.+
T Consensus 229 ~~~~a~~~~~ 238 (296)
T PRK15430 229 CFTAAATRLR 238 (296)
T ss_pred HHHHHHhcCC
Confidence 9999999875
No 9
>TIGR03340 phn_DUF6 phosphonate utilization associated putative membrane protein. This family of hydrophobic proteins has some homology to families of integral membrane proteins such as (pfam00892) and may be a permease. It occurs in the vicinity of various types of operons for the catabolism of phosphonates in Vibrio, Pseudomonas, Polaromonas and Thiomicrospira.
Probab=99.88 E-value=3e-20 Score=171.52 Aligned_cols=228 Identities=18% Similarity=0.181 Sum_probs=165.2
Q ss_pred HHHHHHHHHHHHHHHHHHhhhccCCCHHHHHHHHHHHHHHHHHHHHHHh--CCCCCCChHHHHHHHHHHHHHHHHHHHHH
Q 018398 118 WAVLVSPFFFWGTAMVAMKEVLPKAGTFFVAAFRLIPAGLLLITFASSQ--GRKLPSGFNAWVSIFLFALVDASCFQGFL 195 (356)
Q Consensus 118 ~l~ll~aa~~~~~~~~~~k~~~~~~~p~~~~~~r~~~~~l~~~~~~~~~--~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 195 (356)
.++.++++++|+...+..|...++.++. .+++.....++++|+...+ +...+..+++++..+..+.++...++.++
T Consensus 3 ~~~~~~aa~~~a~~~~~~k~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (281)
T TIGR03340 3 LTLVVFSALMHAGWNLMAKSHADKEPDF--LWWALLAHSVLLTPYGLWYLAQVGWSRLPATFWLLLAISAVANMVYFLGL 80 (281)
T ss_pred HHHHHHHHHHHHHHHHHHhhcCCchhHH--HHHHHHHHHHHHHHHHHHhcccCCCCCcchhhHHHHHHHHHHHHHHHHHH
Confidence 4677999999999999999666654443 4666777777777777654 22333333455555566666668889999
Q ss_pred HHHhhccChhHHHHHHhhHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHhhccCCCCCCCchhhHHHHHHHHHHHHH
Q 018398 196 AQGLQRTSAGLGSVIIDSQPLSVAVLAALLFGESIGLVGAGGLVLGVIGLLLLEAPAFDESNSSLWGSGEWWMLLAAQSM 275 (356)
Q Consensus 196 ~~al~~~~~~~a~~i~~l~pv~~~il~~~~l~e~~~~~~~~g~~l~~~Gv~ll~~~~~~~~~~~~~~~G~llaLlaa~~~ 275 (356)
++|+++.+++.++++.++.|+++++++++++|||+++++++|++++++|++++..++.+. ....|+.++++++++|
T Consensus 81 ~~a~~~~~~~~~~~l~~~~p~~~~l~~~~~~~e~~~~~~~~g~~~~~~Gv~ll~~~~~~~----~~~~g~~~~l~aal~~ 156 (281)
T TIGR03340 81 AQAYHHADVGLVYPLARSSPLLVAIWATLTLGETLSPLAWLGILIITLGLLVLGLSRFAQ----HRRKAYAWALAAALGT 156 (281)
T ss_pred HHHHhcCChhhhhhHHhhhHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcccccc----cchhHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999988654211 1235888999999999
Q ss_pred HHHHHHHhhhccCCChHH----HHHHHHHHHHHHHHHHHHhhcCCCCCcccccCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018398 276 AVGTVMVRWVSKYSDPVM----ATGWHMVIGGLPLMVISVLNHDPVYGESVKELTSSDILALLYTSIFGSAISYGVYFYS 351 (356)
Q Consensus 276 a~~~v~~r~~~~~~~~~~----~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lgi~~s~l~~~l~~~a 351 (356)
++|.+..|+..++.++.. ...+....+++...+.....+... .......++.+++.+.++++++|.+|+++
T Consensus 157 a~~~i~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~s~l~~~l~~~a 231 (281)
T TIGR03340 157 AIYSLSDKAAALGVPAFYSALGYLGIGFLAMGWPFLLLYLKRHGRS-----MFPYARQILPSATLGGLMIGGAYALVLWA 231 (281)
T ss_pred HHhhhhccccccchhcccccHHHHHHHHHHHHHHHHHHHHHHhccc-----hhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999998755544432 222222222122222222112111 11223456677889999999999999999
Q ss_pred hccCC
Q 018398 352 ATKGK 356 (356)
Q Consensus 352 l~~~g 356 (356)
+++.+
T Consensus 232 l~~~~ 236 (281)
T TIGR03340 232 MTRLP 236 (281)
T ss_pred HhhCC
Confidence 99864
No 10
>PF06027 DUF914: Eukaryotic protein of unknown function (DUF914); InterPro: IPR009262 This family consists of several hypothetical proteins of unknown function. Some of the sequences in this family are annotated as putative membrane proteins.
Probab=99.88 E-value=4.1e-20 Score=171.80 Aligned_cols=231 Identities=17% Similarity=0.081 Sum_probs=182.5
Q ss_pred HHHHHHHHHHHHHHHhhhccCCC-HHHHHHHHHHHHHHHHHHHHHHhCCC---CCCChHHHHHHHHHHHHHHHHHHHHHH
Q 018398 121 LVSPFFFWGTAMVAMKEVLPKAG-TFFVAAFRLIPAGLLLITFASSQGRK---LPSGFNAWVSIFLFALVDASCFQGFLA 196 (356)
Q Consensus 121 ll~aa~~~~~~~~~~k~~~~~~~-p~~~~~~r~~~~~l~~~~~~~~~~~~---~~~~~~~~~~~~~~g~~~~~~~~~~~~ 196 (356)
.+++.++-+++.....+..++++ |..+.++.+++-.++..++..+++.. .+..+++|+++++++++. +.++++.+
T Consensus 19 Q~lsl~~~~t~~~s~~l~~~~~~~P~~Qs~~~Y~~l~~vy~~~~~~r~~~~~~~~~~~~~~w~y~lla~~D-v~aN~~~v 97 (334)
T PF06027_consen 19 QVLSLCITGTGTFSSLLANKGVNIPTFQSFFNYVLLALVYTPILLYRRGFKKWLKVLKRPWWKYFLLALLD-VEANYLVV 97 (334)
T ss_pred HHHHHHHHhHHHHHHHHHhcCccCcHHHHHHHHHHHHHHHhhhhhhccccccchhhcchhHHHHHHHHHHH-HHHHHHHH
Confidence 36666666666655555555566 88999999998888888777666432 223457889999999999 78899999
Q ss_pred HHhhccChhHHHHHHhhHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHhhccCCC----CCCCchhhHHHHHHHHHH
Q 018398 197 QGLQRTSAGLGSVIIDSQPLSVAVLAALLFGESIGLVGAGGLVLGVIGLLLLEAPAFD----ESNSSLWGSGEWWMLLAA 272 (356)
Q Consensus 197 ~al~~~~~~~a~~i~~l~pv~~~il~~~~l~e~~~~~~~~g~~l~~~Gv~ll~~~~~~----~~~~~~~~~G~llaLlaa 272 (356)
.|++|++.+.++++..+..+++++++++++|+|+++.+++|+++|++|++++...+.. +...++..+||+++++++
T Consensus 98 ~a~~yTsvtS~~lL~~~~i~~~~~LS~~fL~~ry~~~~~~gv~i~i~Gv~lv~~sD~~~~~~~~~~~~~i~GDll~l~~a 177 (334)
T PF06027_consen 98 LAYQYTSVTSVQLLDCTSIPFVMILSFIFLKRRYSWFHILGVLICIAGVVLVVVSDVLSGSDSSSGSNPILGDLLALLGA 177 (334)
T ss_pred HHhhcccHhHHHhhhhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhhheeeecccccccCCCCCccchhHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999987622 123456779999999999
Q ss_pred HHHHHHHHHHhhhccCCChHHHHHHHHHHHHHHHHHHHHhhcCCCCCcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 018398 273 QSMAVGTVMVRWVSKYSDPVMATGWHMVIGGLPLMVISVLNHDPVYGESVKELTSSDILALLYTSIFGSAISYGVYFYSA 352 (356)
Q Consensus 273 ~~~a~~~v~~r~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lgi~~s~l~~~l~~~al 352 (356)
++||+++++.|++.++.+..+.+++..+++.+++.+...+.|...... .+++.+.+..++.-+ ++..+-|.+.-..+
T Consensus 178 ~lya~~nV~~E~~v~~~~~~~~lg~~Glfg~ii~~iq~~ile~~~i~~--~~w~~~~~~~~v~~~-~~lf~~y~l~p~~l 254 (334)
T PF06027_consen 178 ILYAVSNVLEEKLVKKAPRVEFLGMLGLFGFIISGIQLAILERSGIES--IHWTSQVIGLLVGYA-LCLFLFYSLVPIVL 254 (334)
T ss_pred HHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHHheehhhhhc--cCCChhhHHHHHHHH-HHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999988887654422 234445444433333 45556666665555
Q ss_pred ccC
Q 018398 353 TKG 355 (356)
Q Consensus 353 ~~~ 355 (356)
+..
T Consensus 255 ~~s 257 (334)
T PF06027_consen 255 RMS 257 (334)
T ss_pred HhC
Confidence 543
No 11
>PTZ00343 triose or hexose phosphate/phosphate translocator; Provisional
Probab=99.87 E-value=1.7e-19 Score=171.21 Aligned_cols=221 Identities=14% Similarity=0.094 Sum_probs=167.2
Q ss_pred HHHHHHHhhhccCCC-HHHHHHHHHHHHHHHHHHHHHHhCCCCC-C--ChHHHHHHHHHHHHHHHHHHHHHHHHhhccCh
Q 018398 129 GTAMVAMKEVLPKAG-TFFVAAFRLIPAGLLLITFASSQGRKLP-S--GFNAWVSIFLFALVDASCFQGFLAQGLQRTSA 204 (356)
Q Consensus 129 ~~~~~~~k~~~~~~~-p~~~~~~r~~~~~l~~~~~~~~~~~~~~-~--~~~~~~~~~~~g~~~~~~~~~~~~~al~~~~~ 204 (356)
.......|.+.+.++ |+.++.+|++++.+++..++....++.+ . .++++..++..|+++.+ .+...+.|++++++
T Consensus 62 ~~~~~~nK~vl~~~~~P~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~llp~gl~~~~-~~~~~~~sl~~~sv 140 (350)
T PTZ00343 62 VLYVVDNKLALNMLPLPWTISSLQLFVGWLFALLYWATGFRKIPRIKSLKLFLKNFLPQGLCHLF-VHFGAVISMGLGAV 140 (350)
T ss_pred HHHHHHHHHHHHhCChhHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHHHHH-HHHHHHHHHhhccH
Confidence 334667899988999 9999999999998876655433222211 1 23577788888998854 46667899999999
Q ss_pred hHHHHHHhhHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHhhccCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHhh
Q 018398 205 GLGSVIIDSQPLSVAVLAALLFGESIGLVGAGGLVLGVIGLLLLEAPAFDESNSSLWGSGEWWMLLAAQSMAVGTVMVRW 284 (356)
Q Consensus 205 ~~a~~i~~l~pv~~~il~~~~l~e~~~~~~~~g~~l~~~Gv~ll~~~~~~~~~~~~~~~G~llaLlaa~~~a~~~v~~r~ 284 (356)
+.++++.+++|+++++++++++|||++++++++++++++|+.+....+ .+....|+++++++++++++++++.|+
T Consensus 141 s~~~iika~~Pvft~lls~~~l~ek~s~~~~l~l~l~v~Gv~l~~~~~-----~~~~~~G~~~~l~s~~~~a~~~i~~k~ 215 (350)
T PTZ00343 141 SFTHVVKAAEPVFTALLSILFLKQFLNLYAYLSLIPIVGGVALASVKE-----LHFTWLAFWCAMLSNLGSSLRSIFAKK 215 (350)
T ss_pred HHHHHHHHhhHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHheeccc-----chhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999987533 122356999999999999999999999
Q ss_pred hccC-------CChHHHHHHHHHHHHHHHHHHHHhhcCCCCCccc----ccCCHHHHHHHHHHHHHHHHHHHHHHHH---
Q 018398 285 VSKY-------SDPVMATGWHMVIGGLPLMVISVLNHDPVYGESV----KELTSSDILALLYTSIFGSAISYGVYFY--- 350 (356)
Q Consensus 285 ~~~~-------~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~lgi~~s~l~~~l~~~--- 350 (356)
..++ .++.+...+..+++.++++|+....+.......+ ...+...+..+++ .++.++++|++|+.
T Consensus 216 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lp~~~~~e~~~~~~~~~~~~~~~~~~~~~~~l~-~i~~s~l~~~l~n~~~f 294 (350)
T PTZ00343 216 TMKNKSEIGENLTASNIYMLLTLIASLISLPLVLFFEGKKWVPVWTNYTANMTNYTKGIIIF-KIFFSGVWYYLYNEVAF 294 (350)
T ss_pred HhcccccccccCCHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhhcccccchHHHHH-HHHHHHHHHHHHHHHHH
Confidence 7654 4577777777899999999988766532211000 0111112333444 45778999999995
Q ss_pred -HhccCC
Q 018398 351 -SATKGK 356 (356)
Q Consensus 351 -al~~~g 356 (356)
++++.+
T Consensus 295 ~~l~~~s 301 (350)
T PTZ00343 295 YCLGKVN 301 (350)
T ss_pred HHHhccc
Confidence 777653
No 12
>TIGR00817 tpt Tpt phosphate/phosphoenolpyruvate translocator. specificities overlap.
Probab=99.85 E-value=6.7e-19 Score=164.27 Aligned_cols=178 Identities=14% Similarity=0.091 Sum_probs=151.1
Q ss_pred HHHHhhhccC-CCHHHHHHHHHHHHHHHHHHHHHH-hCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhhccChhHHHH
Q 018398 132 MVAMKEVLPK-AGTFFVAAFRLIPAGLLLITFASS-QGRKLPSGFNAWVSIFLFALVDASCFQGFLAQGLQRTSAGLGSV 209 (356)
Q Consensus 132 ~~~~k~~~~~-~~p~~~~~~r~~~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~al~~~~~~~a~~ 209 (356)
.+.+|.+.++ ..|..+++.|+..+.+.+.+.... .+++.+.+++++..++..|++. +.++.+.++++++++++.+++
T Consensus 18 ~~~NK~~l~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~-~~~~~~~~~~l~~~s~s~~~l 96 (302)
T TIGR00817 18 NIYNKKLLNVFPYPYFKTLISLAVGSLYCLLSWSSGLPKRLKISSALLKLLLPVAIVH-TIGHVTSNVSLSKVAVSFTHT 96 (302)
T ss_pred HHHHHHHHhhCChhHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHHH-HHHHHHHHHHHHhccHHHHHH
Confidence 4578988887 569999999999988776665321 1233344678899999999996 888899999999999999999
Q ss_pred HHhhHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHhhccCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHhhhcc--
Q 018398 210 IIDSQPLSVAVLAALLFGESIGLVGAGGLVLGVIGLLLLEAPAFDESNSSLWGSGEWWMLLAAQSMAVGTVMVRWVSK-- 287 (356)
Q Consensus 210 i~~l~pv~~~il~~~~l~e~~~~~~~~g~~l~~~Gv~ll~~~~~~~~~~~~~~~G~llaLlaa~~~a~~~v~~r~~~~-- 287 (356)
+.++.|+++++++++++|||+++++++|++++++|+.+....+ .+....|++++++++++|++|.++.|+..+
T Consensus 97 i~~~~Pv~~~ll~~~~~~e~~~~~~~~~l~l~~~Gv~l~~~~~-----~~~~~~G~~~~l~a~~~~a~~~v~~k~~~~~~ 171 (302)
T TIGR00817 97 IKAMEPFFSVVLSAFFLGQEFPSTLWLSLLPIVGGVALASDTE-----LSFNWAGFLSAMISNITFVSRNIFSKKAMTIK 171 (302)
T ss_pred HHhcchHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHhhhcCCc-----ccccHHHHHHHHHHHHHHHHHHHHHHHhhccC
Confidence 9999999999999999999999999999999999998764322 122346999999999999999999999887
Q ss_pred CCChHHHHHHHHHHHHHHHHHHHHhhcC
Q 018398 288 YSDPVMATGWHMVIGGLPLMVISVLNHD 315 (356)
Q Consensus 288 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 315 (356)
+.|+...+.++...+.+.++|..+..++
T Consensus 172 ~~~~~~~~~~~~~~~~~~l~p~~~~~~~ 199 (302)
T TIGR00817 172 SLDKTNLYAYISIMSLFLLSPPAFITEG 199 (302)
T ss_pred CCCcccHHHHHHHHHHHHHHHHHHHHcc
Confidence 7899999999999999999999887654
No 13
>COG0697 RhaT Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]
Probab=99.83 E-value=9.5e-18 Score=154.66 Aligned_cols=232 Identities=28% Similarity=0.365 Sum_probs=178.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhccC-CCHHHHHHHHHHHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHHHHHHHH
Q 018398 115 LLEWAVLVSPFFFWGTAMVAMKEVLPK-AGTFFVAAFRLIPAGLLLITFASSQGRKLPSGFNAWVSIFLFALVDASCFQG 193 (356)
Q Consensus 115 ~~g~l~ll~aa~~~~~~~~~~k~~~~~-~~p~~~~~~r~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 193 (356)
..+....++..+.|+......|...++ .++....+.|...+.+...+.....+.......+.+++..+.+.++...++.
T Consensus 6 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (292)
T COG0697 6 LLGLLALLLWGLLWGLSFIALKLAVESLDPFLFAAALRFLIAALLLLPLLLLEPRGLRPALRPWLLLLLLALLGLALPFL 85 (292)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcccCChHHHHHHHHHHHHHHHHHHHHhhcccccccccchHHHHHHHHHHHHHHHH
Confidence 456777888889999999999988887 6777777889998888854444333211122223355667777777789999
Q ss_pred HHHHHhhccChhHHHHHHhhHHHHHHHHHH-HHhCCCCcHHHHHHHHHHHHHHHHhhccCCCCCCCchhhHHHHHHHHHH
Q 018398 194 FLAQGLQRTSAGLGSVIIDSQPLSVAVLAA-LLFGESIGLVGAGGLVLGVIGLLLLEAPAFDESNSSLWGSGEWWMLLAA 272 (356)
Q Consensus 194 ~~~~al~~~~~~~a~~i~~l~pv~~~il~~-~~l~e~~~~~~~~g~~l~~~Gv~ll~~~~~~~~~~~~~~~G~llaLlaa 272 (356)
+++.++++++++.++++.++.|+++.++++ +++|||+++.++++++++++|++++..++...... ...|++++++++
T Consensus 86 ~~~~~~~~~~~~~~~~l~~~~p~~~~~~~~~~~~~e~~~~~~~~~~~~~~~Gv~lv~~~~~~~~~~--~~~g~~~~l~a~ 163 (292)
T COG0697 86 LLFLALKYTSASVASLIIGLLPLFTALLAVLLLLGERLSLLQILGILLALAGVLLILLGGGGGGIL--SLLGLLLALAAA 163 (292)
T ss_pred HHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHccCCCcHHHHHHHHHHHHhHHheecCCCcchhH--HHHHHHHHHHHH
Confidence 999999999999999999999999999997 77799999999999999999999999977332211 457999999999
Q ss_pred HHHHHHHHHHhhhccCCChHHHHH-HHHHHHHHHHHHHHHhhcCCCCCcccccCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018398 273 QSMAVGTVMVRWVSKYSDPVMATG-WHMVIGGLPLMVISVLNHDPVYGESVKELTSSDILALLYTSIFGSAISYGVYFYS 351 (356)
Q Consensus 273 ~~~a~~~v~~r~~~~~~~~~~~~~-~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lgi~~s~l~~~l~~~a 351 (356)
++++++.+..|+.. +.++..... +..........+... .... .+.+...|..+.+++++++++++.+|+++
T Consensus 164 ~~~a~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~-----~~~~~~~~~~~~~~g~~~~~i~~~~~~~~ 235 (292)
T COG0697 164 LLWALYTALVKRLS-RLGPVTLALLLQLLLALLLLLLFFL--SGFG-----APILSRAWLLLLYLGVFSTGLAYLLWYYA 235 (292)
T ss_pred HHHHHHHHHHHHhc-CCChHHHHHHHHHHHHHHHHHHHHh--cccc-----ccCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999987 666666665 444422222222221 1111 23567789999999999999999999999
Q ss_pred hccCC
Q 018398 352 ATKGK 356 (356)
Q Consensus 352 l~~~g 356 (356)
+++.+
T Consensus 236 ~~~~~ 240 (292)
T COG0697 236 LRLLG 240 (292)
T ss_pred HHhcC
Confidence 99864
No 14
>KOG4510 consensus Permease of the drug/metabolite transporter (DMT) superfamily [General function prediction only]
Probab=99.81 E-value=1.9e-21 Score=169.28 Aligned_cols=231 Identities=16% Similarity=0.123 Sum_probs=182.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhccCCCHHHHHHHHHHHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHHHHHHHHH
Q 018398 115 LLEWAVLVSPFFFWGTAMVAMKEVLPKAGTFFVAAFRLIPAGLLLITFASSQGRKLPSGFNAWVSIFLFALVDASCFQGF 194 (356)
Q Consensus 115 ~~g~l~ll~aa~~~~~~~~~~k~~~~~~~p~~~~~~r~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 194 (356)
.+|.+++.++ .++....++.+... +.+|.++.-.|++.-.++..|...+++.+.-.+...+.++++.|+.+ +.+...
T Consensus 37 ~~gl~l~~vs-~ff~~~~vv~t~~~-e~~p~e~a~~r~l~~mlit~pcliy~~~~v~gp~g~R~~LiLRg~mG-~tgvml 113 (346)
T KOG4510|consen 37 NLGLLLLTVS-YFFNSCMVVSTKVL-ENDPMELASFRLLVRMLITYPCLIYYMQPVIGPEGKRKWLILRGFMG-FTGVML 113 (346)
T ss_pred ccCceehhhH-HHHhhHHHhhhhhh-ccChhHhhhhhhhhehhhhheEEEEEeeeeecCCCcEEEEEeehhhh-hhHHHH
Confidence 4566677777 55555555555544 47899999999888888877777776654422223444567788888 556688
Q ss_pred HHHHhhccChhHHHHHHhhHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHhhccCC---C---C---CCCchhhHHH
Q 018398 195 LAQGLQRTSAGLGSVIIDSQPLSVAVLAALLFGESIGLVGAGGLVLGVIGLLLLEAPAF---D---E---SNSSLWGSGE 265 (356)
Q Consensus 195 ~~~al~~~~~~~a~~i~~l~pv~~~il~~~~l~e~~~~~~~~g~~l~~~Gv~ll~~~~~---~---~---~~~~~~~~G~ 265 (356)
.|+|++|++.++|.+|.+.+|+++.+++|+++|||.++.+.+|..+.+.||+++.+|.+ + + +..+...+|.
T Consensus 114 myya~~~mslaDA~vItFssPvft~ifaw~~LkE~~t~~eaL~s~itl~GVVLIvRPpFlFG~~t~g~~~s~~~~~~~gt 193 (346)
T KOG4510|consen 114 MYYALMYMSLADAVVITFSSPVFTIIFAWAFLKEPFTKFEALGSLITLLGVVLIVRPPFLFGDTTEGEDSSQVEYDIPGT 193 (346)
T ss_pred HHHHHhhcchhheEEEEecChHHHHHHHHHHHcCCCcHHHHHHHHHhhheEEEEecCCcccCCCccccccccccccCCch
Confidence 89999999999999999999999999999999999999999999999999999999972 1 1 1113345789
Q ss_pred HHHHHHHHHHHHHHHHHhhhccCCChHHHHHHHHHHHHHHHHHHHHhhcCCCCCcccccCCHHHHHHHHHHHHHHHHHHH
Q 018398 266 WWMLLAAQSMAVGTVMVRWVSKYSDPVMATGWHMVIGGLPLMVISVLNHDPVYGESVKELTSSDILALLYTSIFGSAISY 345 (356)
Q Consensus 266 llaLlaa~~~a~~~v~~r~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lgi~~s~l~~ 345 (356)
+.++.++++.+..+++.|++.++.|....+.|+.+++.+..++.....+... .+..+++|+..+.+| +.+.+++
T Consensus 194 ~aai~s~lf~asvyIilR~iGk~~h~~msvsyf~~i~lV~s~I~~~~ig~~~-----lP~cgkdr~l~~~lG-vfgfigQ 267 (346)
T KOG4510|consen 194 VAAISSVLFGASVYIILRYIGKNAHAIMSVSYFSLITLVVSLIGCASIGAVQ-----LPHCGKDRWLFVNLG-VFGFIGQ 267 (346)
T ss_pred HHHHHhHhhhhhHHHHHHHhhccccEEEEehHHHHHHHHHHHHHHhhcccee-----cCccccceEEEEEeh-hhhhHHH
Confidence 9999999999999999999999999999999999999998888877665443 344567888888888 4556777
Q ss_pred HHHHHHhcc
Q 018398 346 GVYFYSATK 354 (356)
Q Consensus 346 ~l~~~al~~ 354 (356)
.+...++++
T Consensus 268 IllTm~lQi 276 (346)
T KOG4510|consen 268 ILLTMGLQI 276 (346)
T ss_pred HHHHHHhhh
Confidence 777777653
No 15
>COG2962 RarD Predicted permeases [General function prediction only]
Probab=99.74 E-value=2.3e-15 Score=134.07 Aligned_cols=225 Identities=14% Similarity=0.068 Sum_probs=181.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhccCCCHHHHHHHHHHHHHHHHHHHHHHhCCCC-----CCChHHHHHHHHHHHHHHH
Q 018398 115 LLEWAVLVSPFFFWGTAMVAMKEVLPKAGTFFVAAFRLIPAGLLLITFASSQGRKL-----PSGFNAWVSIFLFALVDAS 189 (356)
Q Consensus 115 ~~g~l~ll~aa~~~~~~~~~~k~~~~~~~p~~~~~~r~~~~~l~~~~~~~~~~~~~-----~~~~~~~~~~~~~g~~~~~ 189 (356)
.+|+++.+.+-++||......|.+ +++++.++...|.+.+..+++......+++. .++++.+....+.+.+. .
T Consensus 6 ~~Gil~~l~Ay~lwG~lp~y~kll-~~~~~~eIlahRviwS~~~~l~ll~~~r~~~~~~~~~~~p~~~~~~~l~a~li-~ 83 (293)
T COG2962 6 RKGILLALLAYLLWGLLPLYFKLL-EPLPATEILAHRVIWSFPFMLALLFLLRQWRELKQLLKQPKTLLMLALTALLI-G 83 (293)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHH-ccCCHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhCcHHHHHHHHHHHHH-H
Confidence 568999999999999999999975 6699999999999999888877766554322 22335555555555554 8
Q ss_pred HHHHHHHHHhhccChhHHHHHHhhHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHhhccCCCCCCCchhhHHHHHHH
Q 018398 190 CFQGFLAQGLQRTSAGLGSVIIDSQPLSVAVLAALLFGESIGLVGAGGLVLGVIGLLLLEAPAFDESNSSLWGSGEWWML 269 (356)
Q Consensus 190 ~~~~~~~~al~~~~~~~a~~i~~l~pv~~~il~~~~l~e~~~~~~~~g~~l~~~Gv~ll~~~~~~~~~~~~~~~G~llaL 269 (356)
..+..|.+|.++..+.++++=.++.|++.++++.+|+|||+++.|+++++++.+||....... ++.. ..++
T Consensus 84 ~nW~lfiWAvn~g~~leaSLGY~InPL~~VllG~lflkErls~~Q~iAV~lA~~GV~~~~~~~-----g~lp----wval 154 (293)
T COG2962 84 LNWWLFIWAVNNGHVLEASLGYFINPLVNVLLGRLFLKERLSRLQWIAVGLAAAGVLIQTWLL-----GSLP----WVAL 154 (293)
T ss_pred HHHHHhheecCCCchhHHHhHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHc-----CCCc----HHHH
Confidence 899999999999999999999999999999999999999999999999999999999988744 1111 3567
Q ss_pred HHHHHHHHHHHHHhhhccCCChHHHHHHHHHHHHHHHHHHHHhhcCCCCCcccccCCHHHHHHHHHHHHHHHHHHHHHHH
Q 018398 270 LAAQSMAVGTVMVRWVSKYSDPVMATGWHMVIGGLPLMVISVLNHDPVYGESVKELTSSDILALLYTSIFGSAISYGVYF 349 (356)
Q Consensus 270 laa~~~a~~~v~~r~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lgi~~s~l~~~l~~ 349 (356)
.=+++|+.|...-|+. +.|+.+-.+..++.-.+..+...+..++... .....+...|..++..| ..|+++..+|.
T Consensus 155 ~la~sf~~Ygl~RK~~--~v~a~~g~~lE~l~l~p~al~yl~~l~~~~~--~~~~~~~~~~~LLv~aG-~vTavpL~lf~ 229 (293)
T COG2962 155 ALALSFGLYGLLRKKL--KVDALTGLTLETLLLLPVALIYLLFLADSGQ--FLQQNANSLWLLLVLAG-LVTAVPLLLFA 229 (293)
T ss_pred HHHHHHHHHHHHHHhc--CCchHHhHHHHHHHHhHHHHHHHHHHhcCch--hhhcCCchHHHHHHHhh-HHHHHHHHHHH
Confidence 7789999999998886 6789999999999888888888887765542 11223455677777677 78999999999
Q ss_pred HHhccC
Q 018398 350 YSATKG 355 (356)
Q Consensus 350 ~al~~~ 355 (356)
.|.|+.
T Consensus 230 ~aa~~l 235 (293)
T COG2962 230 AAAKRL 235 (293)
T ss_pred HHHhcC
Confidence 998875
No 16
>COG5006 rhtA Threonine/homoserine efflux transporter [Amino acid transport and metabolism]
Probab=99.71 E-value=4.6e-15 Score=128.80 Aligned_cols=223 Identities=18% Similarity=0.191 Sum_probs=183.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhccCCCHHHHHHHHHHHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHHHHHHHHHHH
Q 018398 117 EWAVLVSPFFFWGTAMVAMKEVLPKAGTFFVAAFRLIPAGLLLITFASSQGRKLPSGFNAWVSIFLFALVDASCFQGFLA 196 (356)
Q Consensus 117 g~l~ll~aa~~~~~~~~~~k~~~~~~~p~~~~~~r~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 196 (356)
.++.++.+.+.--....+.|.+.+.+++..++.+|..++.+++++++...++ +..++++..+..+|... +..+++||
T Consensus 13 p~~~ll~amvsiq~Gas~Ak~LFP~vG~~g~t~lRl~~aaLIll~l~RPwr~--r~~~~~~~~~~~yGvsL-g~MNl~FY 89 (292)
T COG5006 13 PILALLVAMVSIQSGASFAKSLFPLVGAAGVTALRLAIAALILLALFRPWRR--RLSKPQRLALLAYGVSL-GGMNLLFY 89 (292)
T ss_pred cHHHHHHHHHHHHhhHHHHHHHccccChhhHHHHHHHHHHHHHHHHhhHHHh--ccChhhhHHHHHHHHHH-HHHHHHHH
Confidence 4666677766666677788999999999999999999999999988755443 34567888889999887 66789999
Q ss_pred HHhhccChhHHHHHHhhHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHhhccCCCCCCCchhhHHHHHHHHHHHHHH
Q 018398 197 QGLQRTSAGLGSVIIDSQPLSVAVLAALLFGESIGLVGAGGLVLGVIGLLLLEAPAFDESNSSLWGSGEWWMLLAAQSMA 276 (356)
Q Consensus 197 ~al~~~~~~~a~~i~~l~pv~~~il~~~~l~e~~~~~~~~g~~l~~~Gv~ll~~~~~~~~~~~~~~~G~llaLlaa~~~a 276 (356)
.+++..|.+.+..+-|+-|+.+.++.. + +.++.+-+.+++.|+.++.-.+.+.+. ....|..+++.++.||+
T Consensus 90 ~si~riPlGiAVAiEF~GPL~vA~~~s----R--r~~d~vwvaLAvlGi~lL~p~~~~~~~--lDp~Gv~~Al~AG~~Wa 161 (292)
T COG5006 90 LSIERIPLGIAVAIEFTGPLAVALLSS----R--RLRDFVWVALAVLGIWLLLPLGQSVWS--LDPVGVALALGAGACWA 161 (292)
T ss_pred HHHHhccchhhhhhhhccHHHHHHHhc----c--chhhHHHHHHHHHHHHhheeccCCcCc--CCHHHHHHHHHHhHHHH
Confidence 999999999999999999999887762 2 445666677788998888765533332 33469999999999999
Q ss_pred HHHHHHhhhccCCChHHHHHHHHHHHHHHHHHHHHhhcCCCCCcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCC
Q 018398 277 VGTVMVRWVSKYSDPVMATGWHMVIGGLPLMVISVLNHDPVYGESVKELTSSDILALLYTSIFGSAISYGVYFYSATKGK 356 (356)
Q Consensus 277 ~~~v~~r~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lgi~~s~l~~~l~~~al~~~g 356 (356)
+|.+..+|..+..|...-+..-+.+++++.+|+.....++. -.++.....-+..+++++++.|.+-+.+++|.+
T Consensus 162 ~YIv~G~r~g~~~~g~~g~a~gm~vAaviv~Pig~~~ag~~------l~~p~ll~laLgvavlSSalPYsLEmiAL~rlp 235 (292)
T COG5006 162 LYIVLGQRAGRAEHGTAGVAVGMLVAALIVLPIGAAQAGPA------LFSPSLLPLALGVAVLSSALPYSLEMIALRRLP 235 (292)
T ss_pred HHHHHcchhcccCCCchHHHHHHHHHHHHHhhhhhhhcchh------hcChHHHHHHHHHHHHhcccchHHHHHHHhhCC
Confidence 99999999988888889999999999999999998765553 356677778888999999999999999999863
No 17
>COG2510 Predicted membrane protein [Function unknown]
Probab=99.70 E-value=1.4e-16 Score=124.00 Aligned_cols=133 Identities=20% Similarity=0.224 Sum_probs=121.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhccCCCHHHHHHHHHHHHHHHHHHHHHHhCCCCCC---ChHHHHHHHHHHHHHHHHHHH
Q 018398 117 EWAVLVSPFFFWGTAMVAMKEVLPKAGTFFVAAFRLIPAGLLLITFASSQGRKLPS---GFNAWVSIFLFALVDASCFQG 193 (356)
Q Consensus 117 g~l~ll~aa~~~~~~~~~~k~~~~~~~p~~~~~~r~~~~~l~~~~~~~~~~~~~~~---~~~~~~~~~~~g~~~~~~~~~ 193 (356)
..++.++++++++...++.|...+++||...+++|..+..+++..+++..++.... ..|.|..+++-|+.+ +.++.
T Consensus 4 ~~~~ALLsA~fa~L~~iF~KIGl~~vdp~~At~IRtiVi~~~l~~v~~~~g~~~~~~~~~~k~~lflilSGla~-glswl 82 (140)
T COG2510 4 AIIYALLSALFAGLTPIFAKIGLEGVDPDFATTIRTIVILIFLLIVLLVTGNWQAGGEIGPKSWLFLILSGLAG-GLSWL 82 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccccCccHHHHHHHHHHHHHHHHHHHhcCceecccccCcceehhhhHHHHHH-HHHHH
Confidence 46788999999999999999999999999999999999999999999888765433 567888888878665 99999
Q ss_pred HHHHHhhccChhHHHHHHhhHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHhhc
Q 018398 194 FLAQGLQRTSAGLGSVIIDSQPLSVAVLAALLFGESIGLVGAGGLVLGVIGLLLLEA 250 (356)
Q Consensus 194 ~~~~al~~~~~~~a~~i~~l~pv~~~il~~~~l~e~~~~~~~~g~~l~~~Gv~ll~~ 250 (356)
+||+|++...++....+-.++|+++++++++++|||++..+|+|++++.+|++++..
T Consensus 83 ~Yf~ALk~G~as~VvPldk~svvl~~lls~lfL~E~ls~~~~iG~~LI~~Gailvs~ 139 (140)
T COG2510 83 LYFRALKKGKASRVVPLDKTSVVLAVLLSILFLGERLSLPTWIGIVLIVIGAILVSL 139 (140)
T ss_pred HHHHHHhcCCcceEEEcccccHHHHHHHHHHHhcCCCCHHHHHHHHHHHhCeeeEec
Confidence 999999999999999999999999999999999999999999999999999988754
No 18
>TIGR00776 RhaT RhaT L-rhamnose-proton symporter family protein. These proteins are members of the L-Rhamnose Symporter (RhaT) Family (TC 2.A.7). This family includes two characterized members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.
Probab=99.69 E-value=1.2e-14 Score=134.57 Aligned_cols=221 Identities=15% Similarity=0.115 Sum_probs=159.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhccCCCHHHHHHHHHHHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHHHHHHHHHHH
Q 018398 117 EWAVLVSPFFFWGTAMVAMKEVLPKAGTFFVAAFRLIPAGLLLITFASSQGRKLPSGFNAWVSIFLFALVDASCFQGFLA 196 (356)
Q Consensus 117 g~l~ll~aa~~~~~~~~~~k~~~~~~~p~~~~~~r~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 196 (356)
++++.++++++||+..+..|... +.++.++. |..++.+++..+....+.+....++.+..-++.|.+ ...++.+++
T Consensus 2 ~~l~~lia~~~wGs~g~~~k~~~-g~~~~~~~--~~~~g~l~~~~~~~~~~~~~~~~~~~~~~g~l~G~~-w~ig~~~~~ 77 (290)
T TIGR00776 2 DILIALIPALFWGSFVLINVKIG-GGPYSQTL--GTTFGALILSIAIAIFVLPEFWALSIFLVGLLSGAF-WALGQINQF 77 (290)
T ss_pred chHHHHHHHHHHhhhHHHHhccC-CCHHHHHH--HHHHHHHHHHHHHHHHhCCcccccHHHHHHHHHHHH-HHhhhhhHH
Confidence 47888999999999999999876 67777665 777777777665554433222122333333333443 588889999
Q ss_pred HHhhccChhHHHHHHh-hHHHHHHHHHHHHhCCCCcHHH----HHHHHHHHHHHHHhhccCCCCCC-C--chhhHHHHHH
Q 018398 197 QGLQRTSAGLGSVIID-SQPLSVAVLAALLFGESIGLVG----AGGLVLGVIGLLLLEAPAFDESN-S--SLWGSGEWWM 268 (356)
Q Consensus 197 ~al~~~~~~~a~~i~~-l~pv~~~il~~~~l~e~~~~~~----~~g~~l~~~Gv~ll~~~~~~~~~-~--~~~~~G~lla 268 (356)
.++++++.+.+..+.. +.++++.+++.+++||+.++++ ++|++++++|++++...+.+... . .+..+|.+++
T Consensus 78 ~ai~~~gva~a~~i~~~~~~v~~~l~~~~~f~e~~t~~~~~~~~~g~~l~l~G~~l~~~~~~~~~~~~~~~~~~~Gi~~~ 157 (290)
T TIGR00776 78 KSMRYMGVSKTMPISTGFQLVGGTLFGVIVFGEWSTSIQTLLGLLALILIIIGVYLTSRSKDKSAGIKSEFNFKKGILLL 157 (290)
T ss_pred HHHHHHhHHHHhHHHHHHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhHheEEeccccccccccccchhhHHHHH
Confidence 9999999999998877 9999999999999999999999 99999999999998775422111 1 2335799999
Q ss_pred HHHHHHHHHHHHHHhhhccCCChHHHHHHHHH---HHHHHHHHHHHhhcCCCCCcccccCCHHHHHHHHHHHHHHHHHHH
Q 018398 269 LLAAQSMAVGTVMVRWVSKYSDPVMATGWHMV---IGGLPLMVISVLNHDPVYGESVKELTSSDILALLYTSIFGSAISY 345 (356)
Q Consensus 269 Llaa~~~a~~~v~~r~~~~~~~~~~~~~~~~~---~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lgi~~s~l~~ 345 (356)
++++++|+.|.+..|+. ++++...++.+.. +++++..+... .. .+...+.++..+..|++ ..+++
T Consensus 158 l~sg~~y~~~~~~~~~~--~~~~~~~~~~~~~g~~~~~~~~~~~~~--~~-------~~~~~~~~~~~~~~Gi~-~~ia~ 225 (290)
T TIGR00776 158 LMSTIGYLVYVVVAKAF--GVDGLSVLLPQAIGMVIGGIIFNLGHI--LA-------KPLKKYAILLNILPGLM-WGIGN 225 (290)
T ss_pred HHHHHHHHHHHHHHHHc--CCCcceehhHHHHHHHHHHHHHHHHHh--cc-------cchHHHHHHHHHHHHHH-HHHHH
Confidence 99999999999999987 4788888554444 33332222211 00 11233344444448877 79999
Q ss_pred HHHHHHhc
Q 018398 346 GVYFYSAT 353 (356)
Q Consensus 346 ~l~~~al~ 353 (356)
.+|..+.+
T Consensus 226 ~~y~~~~~ 233 (290)
T TIGR00776 226 FFYLFSAQ 233 (290)
T ss_pred HHHHHHcc
Confidence 99999887
No 19
>KOG2765 consensus Predicted membrane protein [Function unknown]
Probab=99.62 E-value=1e-14 Score=133.37 Aligned_cols=242 Identities=15% Similarity=0.090 Sum_probs=180.5
Q ss_pred ccchhHHHHHHHHHHHHHHHHHHHHHhhhccCCC---HHHHHHHHHHHHHHHHHHHHH------H---h---------C-
Q 018398 110 MELGMLLEWAVLVSPFFFWGTAMVAMKEVLPKAG---TFFVAAFRLIPAGLLLITFAS------S---Q---------G- 167 (356)
Q Consensus 110 ~~~~~~~g~l~ll~aa~~~~~~~~~~k~~~~~~~---p~~~~~~r~~~~~l~~~~~~~------~---~---------~- 167 (356)
+..+...|++++++..++|-.+.-+++.+.++-. |+.++++....-.+.+.++.+ . + .
T Consensus 8 ~~~r~~lGl~lL~~V~viWV~SSeLT~~if~~~~f~kPFfiTY~~ts~fivYL~~~~~~d~~~~~~~~R~~~~~~~~~~e 87 (416)
T KOG2765|consen 8 KRWRWTLGLVLLLLVVVIWVASSELTQSIFEDYNFRKPFFITYLKTSLFIVYLPPFILIDAPWRILETRSKRSNHAIMEE 87 (416)
T ss_pred hhhHHHHHHHHHHHHHHHHHhHHHHHHHHHhhcccCCceeEeeecccceehhhhhhhhhcchhhhhhhhccccchhhhhh
Confidence 3344578999999999999999999998887643 888887776655555554331 0 0 0
Q ss_pred ----------------------------------C---------------CCCCChH------------HHHHHHHHHHH
Q 018398 168 ----------------------------------R---------------KLPSGFN------------AWVSIFLFALV 186 (356)
Q Consensus 168 ----------------------------------~---------------~~~~~~~------------~~~~~~~~g~~ 186 (356)
. +.+...+ +..++.+.=+.
T Consensus 88 ~d~e~y~~~~~~~~~~~~~l~~~~~~~~~~~~l~s~~~~~~~s~~~e~~~~~~~~~rs~l~~~~~~t~~~~ak~sl~fc~ 167 (416)
T KOG2765|consen 88 ADAEGYFSACTTDKTMESGLSGPESVPDKSPLLGSGEEEKPESTNLEVREKANTKKRSNLKERGKLTATQTAKLSLFFCP 167 (416)
T ss_pred hhhhccccccccccccccccCCceeeeccccccccccccCCCCccccccccCCcccccchhhhhhhHHHHHHHHHHHHHH
Confidence 0 0000111 33344333333
Q ss_pred HHHHHHHHHHHHhhccChhHHHHHHhhHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHhhccCC---CCCCCchhhH
Q 018398 187 DASCFQGFLAQGLQRTSAGLGSVIIDSQPLSVAVLAALLFGESIGLVGAGGLVLGVIGLLLLEAPAF---DESNSSLWGS 263 (356)
Q Consensus 187 ~~~~~~~~~~~al~~~~~~~a~~i~~l~pv~~~il~~~~l~e~~~~~~~~g~~l~~~Gv~ll~~~~~---~~~~~~~~~~ 263 (356)
-.+.+++++..|+.+++++..+++..++-+|+..++.++.+||+++.+.++++++++||+++...+. ++.+.+....
T Consensus 168 lWF~anl~~naALa~TsVAS~TilSStSs~FtL~la~if~~e~ft~sKllav~~si~GViiVt~~~s~~~~~~~a~~~ll 247 (416)
T KOG2765|consen 168 LWFLANLTSNAALAFTSVASTTILSSTSSFFTLFLAAIFPVERFTLSKLLAVFVSIAGVIIVTMGDSKQNSDLPASRPLL 247 (416)
T ss_pred HHHHHHHHHHHHhhhhhhhhhhhhhhcchHHHHHHHHHcCcchhhHHHHHHHHHhhccEEEEEeccccccccCCccchhH
Confidence 3478889999999999999999999999999999999999999999999999999999999998763 1223344568
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhccC----CChHHHHHHHHHHHHHHHHHHHHhhcCCCCCcccccCCHHHHHHHHHHHHH
Q 018398 264 GEWWMLLAAQSMAVGTVMVRWVSKY----SDPVMATGWHMVIGGLPLMVISVLNHDPVYGESVKELTSSDILALLYTSIF 339 (356)
Q Consensus 264 G~llaLlaa~~~a~~~v~~r~~~~~----~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lgi~ 339 (356)
|++++|++|+.||+|.++.||...+ .|.....++..++..+++.|..++.+.... +.+..++......++..+++
T Consensus 248 G~llaL~sA~~YavY~vllk~~~~~eg~rvdi~lffGfvGLfnllllwP~l~iL~~~~~-e~F~lP~~~q~~~vv~~~li 326 (416)
T KOG2765|consen 248 GNLLALLSALLYAVYTVLLKRKIGDEGERVDIQLFFGFVGLFNLLLLWPPLIILDFFGE-ERFELPSSTQFSLVVFNNLI 326 (416)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHHHhHHHHHHHHhcc-CcccCCCCceeEeeeHhhHH
Confidence 9999999999999999999986543 467777777888888888877776543321 12233445566778888999
Q ss_pred HHHHHHHHHHHHh
Q 018398 340 GSAISYGVYFYSA 352 (356)
Q Consensus 340 ~s~l~~~l~~~al 352 (356)
+++++-++|.+|+
T Consensus 327 gtvvSDylW~~a~ 339 (416)
T KOG2765|consen 327 GTVVSDYLWAKAV 339 (416)
T ss_pred HHHHHHHHHHHHH
Confidence 9999999999986
No 20
>KOG2766 consensus Predicted membrane protein [Function unknown]
Probab=99.59 E-value=2.1e-16 Score=137.10 Aligned_cols=189 Identities=16% Similarity=0.168 Sum_probs=165.7
Q ss_pred HHHHHHHHHHHHHHHhhhccCCC-HHHHHHHHHHHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHh
Q 018398 121 LVSPFFFWGTAMVAMKEVLPKAG-TFFVAAFRLIPAGLLLITFASSQGRKLPSGFNAWVSIFLFALVDASCFQGFLAQGL 199 (356)
Q Consensus 121 ll~aa~~~~~~~~~~k~~~~~~~-p~~~~~~r~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~al 199 (356)
.+++.++-+.++...-++..+++ |..++++.+.+-+++..+++.+|++.. ...|..+++++++. +.++++...|+
T Consensus 24 QiLSL~~t~~a~tss~la~k~iN~Pt~QtFl~Y~LLalVY~~~~~fR~~~~---~~~~~hYilla~~D-VEaNy~vV~Ay 99 (336)
T KOG2766|consen 24 QILSLLITSTAFTSSELARKGINAPTSQTFLNYVLLALVYGPIMLFRRKYI---KAKWRHYILLAFVD-VEANYFVVKAY 99 (336)
T ss_pred HHHHHHHHcchhhhHHHHhccCCCccHHHHHHHHHHHHHHhhHHHhhhHHH---HHHHHHhhheeEEe-ecccEEEeeeh
Confidence 47777787877777666666565 999999999999999999998887433 35566689999999 78888999999
Q ss_pred hccChhHHHHHHhhHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHhhccC---CCCCCCchhhHHHHHHHHHHHHHH
Q 018398 200 QRTSAGLGSVIIDSQPLSVAVLAALLFGESIGLVGAGGLVLGVIGLLLLEAPA---FDESNSSLWGSGEWWMLLAAQSMA 276 (356)
Q Consensus 200 ~~~~~~~a~~i~~l~pv~~~il~~~~l~e~~~~~~~~g~~l~~~Gv~ll~~~~---~~~~~~~~~~~G~llaLlaa~~~a 276 (356)
+|++...+.++-.+....+.+++|++++.|..+.++.|+++|++|++++...+ ++...+++..+||.+.+++|.+||
T Consensus 100 QyTsmtSi~lLDcwaip~v~~lsw~fLktrYrlmki~gV~iCi~GvvmvV~sDV~agd~aggsnp~~GD~lvi~GATlYa 179 (336)
T KOG2766|consen 100 QYTSMTSIMLLDCWAIPCVLVLSWFFLKTRYRLMKISGVVICIVGVVMVVFSDVHAGDRAGGSNPVKGDFLVIAGATLYA 179 (336)
T ss_pred hhcchHHHHHHHHhhhHHHHHHHHHHHHHHHhhheeeeEEeEecceEEEEEeeeccccccCCCCCccCcEEEEecceeee
Confidence 99999999999999999999999999999999999999999999999999887 233445677899999999999999
Q ss_pred HHHHHHhhhccCCChHHHHHHHHHHHHHHHHHHHHhhc
Q 018398 277 VGTVMVRWVSKYSDPVMATGWHMVIGGLPLMVISVLNH 314 (356)
Q Consensus 277 ~~~v~~r~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 314 (356)
+.++..+.+.++.|-.+.+....++|+++..+- ++.+
T Consensus 180 VSNv~EEflvkn~d~~elm~~lgLfGaIIsaIQ-~i~~ 216 (336)
T KOG2766|consen 180 VSNVSEEFLVKNADRVELMGFLGLFGAIISAIQ-FIFE 216 (336)
T ss_pred eccccHHHHHhcCcHHHHHHHHHHHHHHHHHHH-Hhhh
Confidence 999999999999999999999999999999998 4444
No 21
>PF00892 EamA: EamA-like transporter family; InterPro: IPR000620 This domain is found in proteins including the Erwinia chrysanthemi PecM protein, which is involved in pectinase, cellulase and blue pigment regulation; and the Salmonella typhimurium PagO protein, the function of which is unknown. Many members of this family are classed as drug/metabolite transporters and have no known function. They are predicted to be integral membrane proteins and many of the proteins contain two copies of this domain [].; GO: 0016020 membrane
Probab=99.57 E-value=2.3e-14 Score=115.25 Aligned_cols=123 Identities=24% Similarity=0.383 Sum_probs=108.9
Q ss_pred HHHHHHHHHHhhhccCCCHHHHHHHHHHHHHHHHHHHHHHhCCC--CCCChHHHHHHHHHHHHHHHHHHHHHHHHhhccC
Q 018398 126 FFWGTAMVAMKEVLPKAGTFFVAAFRLIPAGLLLITFASSQGRK--LPSGFNAWVSIFLFALVDASCFQGFLAQGLQRTS 203 (356)
Q Consensus 126 ~~~~~~~~~~k~~~~~~~p~~~~~~r~~~~~l~~~~~~~~~~~~--~~~~~~~~~~~~~~g~~~~~~~~~~~~~al~~~~ 203 (356)
++||...+..|...++.+|....++|+..+.+ ++++....+++ ...+.+++...+..+.++...++.++++++++++
T Consensus 1 ~~~a~~~~~~k~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~ 79 (126)
T PF00892_consen 1 FSWAIYSVFSKKLLKKISPLSITFWRFLIAGI-LLILLLILGRKPFKNLSPRQWLWLLFLGLLGTALAYLLYFYALKYIS 79 (126)
T ss_pred ceeeeHHHHHHHHhccCCHHHHHHHHHHHHHH-HHHHHHhhccccccCCChhhhhhhhHhhccceehHHHHHHHHHHhcc
Confidence 47899999999999999999999999999997 55555544432 3456678888888898877999999999999999
Q ss_pred hhHHHHHHhhHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHhh
Q 018398 204 AGLGSVIIDSQPLSVAVLAALLFGESIGLVGAGGLVLGVIGLLLLE 249 (356)
Q Consensus 204 ~~~a~~i~~l~pv~~~il~~~~l~e~~~~~~~~g~~l~~~Gv~ll~ 249 (356)
++.++.+..++|+++++++++++||++++.+++|++++++|++++.
T Consensus 80 ~~~~~~~~~~~pv~~~i~~~~~~~e~~~~~~~~g~~l~~~g~~l~~ 125 (126)
T PF00892_consen 80 ASIVSILQYLSPVFAAILGWLFLGERPSWRQIIGIILIIIGVVLIS 125 (126)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999998875
No 22
>TIGR00950 2A78 Carboxylate/Amino Acid/Amine Transporter.
Probab=99.46 E-value=3.6e-12 Score=116.06 Aligned_cols=131 Identities=19% Similarity=0.262 Sum_probs=115.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhccCCCH--HHHHHHHHHHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHHHHHHH
Q 018398 115 LLEWAVLVSPFFFWGTAMVAMKEVLPKAGT--FFVAAFRLIPAGLLLITFASSQGRKLPSGFNAWVSIFLFALVDASCFQ 192 (356)
Q Consensus 115 ~~g~l~ll~aa~~~~~~~~~~k~~~~~~~p--~~~~~~r~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 192 (356)
..|.++.++++++|+...+..|...++.++ .....+++.++.++++++....++......+++...+..++++..+++
T Consensus 127 ~~G~~~~l~a~~~~a~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 206 (260)
T TIGR00950 127 PAGLLLGLGSGISFALGTVLYKRLVKKEGPELLQFTGWVLLLGALLLLPFAWFLGPNPQALSLQWGALLYLGLIGTALAY 206 (260)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHhhcCCchHHHHHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHHHHHHH
Confidence 578999999999999999999998877774 455557899999999888776654444455677778888999889999
Q ss_pred HHHHHHhhccChhHHHHHHhhHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHH
Q 018398 193 GFLAQGLQRTSAGLGSVIIDSQPLSVAVLAALLFGESIGLVGAGGLVLGVIGL 245 (356)
Q Consensus 193 ~~~~~al~~~~~~~a~~i~~l~pv~~~il~~~~l~e~~~~~~~~g~~l~~~Gv 245 (356)
.++++++++.+++.++.+.+++|+++++++++++||++++.+++|+++.+.|+
T Consensus 207 ~~~~~a~~~~~~~~~s~~~~~~pv~~~ll~~~~~~E~~~~~~~~G~~li~~g~ 259 (260)
T TIGR00950 207 FLWNKGLTLVDPSAASILALAEPLVALLLGLLILGETLSLPQLIGGALIIAAV 259 (260)
T ss_pred HHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999999999999999999986
No 23
>PF08449 UAA: UAA transporter family; InterPro: IPR013657 This family includes transporters with a specificity for UDP-N-acetylglucosamine []. ; GO: 0055085 transmembrane transport
Probab=99.44 E-value=8.1e-11 Score=109.85 Aligned_cols=211 Identities=17% Similarity=0.071 Sum_probs=159.9
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhhccChhHHHHHHhhHHHHHHHHH
Q 018398 143 GTFFVAAFRLIPAGLLLITFASSQGRKLPSGFNAWVSIFLFALVDASCFQGFLAQGLQRTSAGLGSVIIDSQPLSVAVLA 222 (356)
Q Consensus 143 ~p~~~~~~r~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~al~~~~~~~a~~i~~l~pv~~~il~ 222 (356)
.|..+++.++....+...+.....+. .+.++..+..++..+++. .++..+.+.|++|++...-.++....|+.+++++
T Consensus 31 ~~~~lt~~q~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~-~~~~~~~~~al~~i~~p~~~~~ks~~~i~vmi~~ 108 (303)
T PF08449_consen 31 FPLFLTFVQFAFNALFSFILLSLFKF-PKSRKIPLKKYAILSFLF-FLASVLSNAALKYISYPTQIVFKSSKPIPVMILG 108 (303)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHhccc-cCCCcChHHHHHHHHHHH-HHHHHHHHHHHHhCChHHHHHHhhhHHHHHHHHH
Confidence 48999999999988888777666552 222345566777777777 7777899999999999999999999999999999
Q ss_pred HHHhCCCCcHHHHHHHHHHHHHHHHhhccCCCCCCC-----chhhHHHHHHHHHHHHHHHHHHHHhhhcc--CCChHHHH
Q 018398 223 ALLFGESIGLVGAGGLVLGVIGLLLLEAPAFDESNS-----SLWGSGEWWMLLAAQSMAVGTVMVRWVSK--YSDPVMAT 295 (356)
Q Consensus 223 ~~~l~e~~~~~~~~g~~l~~~Gv~ll~~~~~~~~~~-----~~~~~G~llaLlaa~~~a~~~v~~r~~~~--~~~~~~~~ 295 (356)
.+++|+|+++.+++++++..+|+++....+...... .....|+++.+++.++.++..++.++..+ +.++.+.+
T Consensus 109 ~l~~~k~y~~~~~~~v~li~~Gv~~~~~~~~~~~~~~~~~~~~~~~G~~ll~~sl~~~a~~~~~qe~~~~~~~~~~~~~m 188 (303)
T PF08449_consen 109 VLILGKRYSRRQYLSVLLITIGVAIFTLSDSSSSSSSNSSSFSSALGIILLLLSLLLDAFTGVYQEKLFKKYGKSPWELM 188 (303)
T ss_pred HHhcCccccHHHHHHHHHHHhhHheeeecccccccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhCCcHHHHH
Confidence 999999999999999999999999999876322111 11234999999999999999999998765 45788999
Q ss_pred HHHHHHHHHHHHHHHHh--hcCCCCCcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCC
Q 018398 296 GWHMVIGGLPLMVISVL--NHDPVYGESVKELTSSDILALLYTSIFGSAISYGVYFYSATKGK 356 (356)
Q Consensus 296 ~~~~~~~~i~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~lgi~~s~l~~~l~~~al~~~g 356 (356)
++..+++.+..++..+. .++...........+..+..++... ++..++....++.+++.|
T Consensus 189 fy~n~~~~~~~~~~~~~l~~~~~~~~~~f~~~~p~~~~~l~~~s-~~~~~g~~~i~~~~~~~~ 250 (303)
T PF08449_consen 189 FYTNLFSLPFLLILLFLLPTGEFRSAIRFISAHPSVLLYLLLFS-LTGALGQFFIFYLIKKFS 250 (303)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHhHHHHHHHHHHH-HHHHHHHHHHHHHHHhcC
Confidence 99999999998888887 3332211111122334455555555 666777777777666643
No 24
>PRK10532 threonine and homoserine efflux system; Provisional
Probab=99.39 E-value=2.9e-11 Score=112.36 Aligned_cols=137 Identities=14% Similarity=0.104 Sum_probs=115.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhccCCCHHHHHHHHHHHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHHHHHHHHH
Q 018398 115 LLEWAVLVSPFFFWGTAMVAMKEVLPKAGTFFVAAFRLIPAGLLLITFASSQGRKLPSGFNAWVSIFLFALVDASCFQGF 194 (356)
Q Consensus 115 ~~g~l~ll~aa~~~~~~~~~~k~~~~~~~p~~~~~~r~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 194 (356)
..|.++.++++++|+...+..|...++.++..... ...++.+++.++..............+...+.+|+++..++|.+
T Consensus 147 ~~G~ll~l~aa~~~a~~~v~~r~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~lgv~~t~~~~~l 225 (293)
T PRK10532 147 LTGAALALGAGACWAIYILSGQRAGAEHGPATVAI-GSLIAALIFVPIGALQAGEALWHWSILPLGLAVAILSTALPYSL 225 (293)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhccCCchHHHH-HHHHHHHHHHHHHHHccCcccCCHHHHHHHHHHHHHHHHHHHHH
Confidence 46899999999999999999999877788877654 44566666777666544322234455555678899999999999
Q ss_pred HHHHhhccChhHHHHHHhhHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHhhccC
Q 018398 195 LAQGLQRTSAGLGSVIIDSQPLSVAVLAALLFGESIGLVGAGGLVLGVIGLLLLEAPA 252 (356)
Q Consensus 195 ~~~al~~~~~~~a~~i~~l~pv~~~il~~~~l~e~~~~~~~~g~~l~~~Gv~ll~~~~ 252 (356)
+++++++.++++++++.+++|++.++++++++||+++..+++|.+++++|+.......
T Consensus 226 ~~~~~~~~~a~~as~~~~l~Pv~a~l~~~l~lgE~~~~~~~iG~~lIl~~~~~~~~~~ 283 (293)
T PRK10532 226 EMIALTRLPTRTFGTLMSMEPALAAVSGMIFLGETLTLIQWLALGAIIAASMGSTLTI 283 (293)
T ss_pred HHHHHHhcChhHHHHHHHhHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHhcC
Confidence 9999999999999999999999999999999999999999999999999999887654
No 25
>PF13536 EmrE: Multidrug resistance efflux transporter
Probab=99.31 E-value=2.9e-11 Score=96.02 Aligned_cols=104 Identities=22% Similarity=0.294 Sum_probs=87.9
Q ss_pred HHHHHHHHHHHHHHHHHhCCCCC----CChHHHHHHHHHHHHHHHHHHHHHHHHhhccChhHHHHHHhhHHHHHHHHHHH
Q 018398 149 AFRLIPAGLLLITFASSQGRKLP----SGFNAWVSIFLFALVDASCFQGFLAQGLQRTSAGLGSVIIDSQPLSVAVLAAL 224 (356)
Q Consensus 149 ~~r~~~~~l~~~~~~~~~~~~~~----~~~~~~~~~~~~g~~~~~~~~~~~~~al~~~~~~~a~~i~~l~pv~~~il~~~ 224 (356)
.+|+..+.+++..+...+++..+ .+.+.+.+.+..|.++...++.++++|+++.+ +.++.+.++.|+++.+++++
T Consensus 2 a~r~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~a~~~~~-~~v~~i~~~~pi~~~ll~~~ 80 (113)
T PF13536_consen 2 AFRYLFSVLFLLIILLIRGRLRDLFRALRRKPWLWLILAGLLGFGVAYLLFFYALSYAP-ALVAAIFSLSPIFTALLSWL 80 (113)
T ss_pred HHHHHHHHHHHHHHHHHHccHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHhCc-HHHHHHHHHHHHHHHHHHHH
Confidence 58999999999888877654211 12355566677788886688999999999999 58889999999999999999
Q ss_pred HhCCCCcHHHHHHHHHHHHHHHHhhccCC
Q 018398 225 LFGESIGLVGAGGLVLGVIGLLLLEAPAF 253 (356)
Q Consensus 225 ~l~e~~~~~~~~g~~l~~~Gv~ll~~~~~ 253 (356)
++|||++++++++++++++|++++..++.
T Consensus 81 ~~~er~~~~~~~a~~l~~~Gv~li~~~~~ 109 (113)
T PF13536_consen 81 FFKERLSPRRWLAILLILIGVILIAWSDL 109 (113)
T ss_pred HhcCCCCHHHHHHHHHHHHHHHHHhhhhc
Confidence 99999999999999999999999998773
No 26
>PRK11272 putative DMT superfamily transporter inner membrane protein; Provisional
Probab=99.31 E-value=1.2e-10 Score=108.13 Aligned_cols=137 Identities=14% Similarity=0.144 Sum_probs=116.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhccCCCHHHHHHHHHHHHHHHHHHHHHHhCCCC--CCChHHHHHHHHHHHHHHHHHH
Q 018398 115 LLEWAVLVSPFFFWGTAMVAMKEVLPKAGTFFVAAFRLIPAGLLLITFASSQGRKL--PSGFNAWVSIFLFALVDASCFQ 192 (356)
Q Consensus 115 ~~g~l~ll~aa~~~~~~~~~~k~~~~~~~p~~~~~~r~~~~~l~~~~~~~~~~~~~--~~~~~~~~~~~~~g~~~~~~~~ 192 (356)
..|.++.++++++|+...+..|...+. ++...+.+++.++.+.+.++....+... ....+.+..++..++++..+++
T Consensus 149 ~~G~l~~l~a~~~~a~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~i~~s~~~~ 227 (292)
T PRK11272 149 PWGAILILIASASWAFGSVWSSRLPLP-VGMMAGAAEMLAAGVVLLIASLLSGERLTALPTLSGFLALGYLAVFGSIIAI 227 (292)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhcCCC-cchHHHHHHHHHHHHHHHHHHHHcCCcccccCCHHHHHHHHHHHHHHHHHHH
Confidence 468999999999999999999986543 4556778888888888887766544322 1245678888889999889999
Q ss_pred HHHHHHhhccChhHHHHHHhhHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHhhccC
Q 018398 193 GFLAQGLQRTSAGLGSVIIDSQPLSVAVLAALLFGESIGLVGAGGLVLGVIGLLLLEAPA 252 (356)
Q Consensus 193 ~~~~~al~~~~~~~a~~i~~l~pv~~~il~~~~l~e~~~~~~~~g~~l~~~Gv~ll~~~~ 252 (356)
.++++++++.++++++++.+++|+++++++++++||++++.+++|+++++.|++++...+
T Consensus 228 ~l~~~~~~~~~~~~~s~~~~l~Pi~a~i~~~~~l~E~~t~~~iiG~~lIi~gv~~~~~~~ 287 (292)
T PRK11272 228 SAYMYLLRNVRPALATSYAYVNPVVAVLLGTGLGGETLSPIEWLALGVIVFAVVLVTLGK 287 (292)
T ss_pred HHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999887643
No 27
>PRK11689 aromatic amino acid exporter; Provisional
Probab=99.26 E-value=2.6e-10 Score=106.10 Aligned_cols=134 Identities=16% Similarity=0.111 Sum_probs=105.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhccCCCHHHHHHHHHHHHHHHHHHHHHHhCC-CCCCChHHHHHHHHHHHHHHHHHHH
Q 018398 115 LLEWAVLVSPFFFWGTAMVAMKEVLPKAGTFFVAAFRLIPAGLLLITFASSQGR-KLPSGFNAWVSIFLFALVDASCFQG 193 (356)
Q Consensus 115 ~~g~l~ll~aa~~~~~~~~~~k~~~~~~~p~~~~~~r~~~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~~~~~~~ 193 (356)
..|.++.++++++|+...+..|...++.++..... ..+.+.+.+.....+. ........+..++..++ ..+++|.
T Consensus 155 ~~G~~~~l~aa~~~A~~~v~~k~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~-~t~~~~~ 230 (295)
T PRK11689 155 PLSYGLAFIGAFIWAAYCNVTRKYARGKNGITLFF---ILTALALWIKYFLSPQPAMVFSLPAIIKLLLAAA-AMGFGYA 230 (295)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhhccCCCCchhHHH---HHHHHHHHHHHHHhcCccccCCHHHHHHHHHHHH-HHHHHHH
Confidence 45889999999999999999999877777765432 2233333332223322 12334466766666664 5688999
Q ss_pred HHHHHhhccChhHHHHHHhhHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHhhccC
Q 018398 194 FLAQGLQRTSAGLGSVIIDSQPLSVAVLAALLFGESIGLVGAGGLVLGVIGLLLLEAPA 252 (356)
Q Consensus 194 ~~~~al~~~~~~~a~~i~~l~pv~~~il~~~~l~e~~~~~~~~g~~l~~~Gv~ll~~~~ 252 (356)
++++++++.+++.++.+.+++|++.+++++++++|+++..+++|++++++|+.+....+
T Consensus 231 l~~~al~~~~a~~~s~~~~l~Pv~a~i~~~~~lgE~~~~~~~iG~~lI~~gv~~~~~~~ 289 (295)
T PRK11689 231 AWNVGILHGNMTLLATASYFTPVLSAALAALLLSTPLSFSFWQGVAMVTAGSLLCWLAT 289 (295)
T ss_pred HHHHHHHccCHHHHHHHHHhHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHhHHHHhhhH
Confidence 99999999999999999999999999999999999999999999999999998887644
No 28
>PF04142 Nuc_sug_transp: Nucleotide-sugar transporter; InterPro: IPR007271 This family of membrane proteins transport nucleotide sugars from the cytoplasm into golgi vesicles. P78382 from SWISSPROT transports CMP-sialic acid, P78381 from SWISSPROT transports UDP-galactose and Q9Y2D2 from SWISSPROT transports UDP-GlcNAc. This family has some but not complete overlap with the UDP-galactose transporter family IPR004689 from INTERPRO.; GO: 0005351 sugar:hydrogen symporter activity, 0008643 carbohydrate transport, 0000139 Golgi membrane, 0016021 integral to membrane
Probab=99.22 E-value=2.5e-09 Score=96.34 Aligned_cols=172 Identities=16% Similarity=0.064 Sum_probs=132.1
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHhhccChhHHHHHHhhHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHhhccC
Q 018398 173 GFNAWVSIFLFALVDASCFQGFLAQGLQRTSAGLGSVIIDSQPLSVAVLAALLFGESIGLVGAGGLVLGVIGLLLLEAPA 252 (356)
Q Consensus 173 ~~~~~~~~~~~g~~~~~~~~~~~~~al~~~~~~~a~~i~~l~pv~~~il~~~~l~e~~~~~~~~g~~l~~~Gv~ll~~~~ 252 (356)
.+++.+++.+.+++. .+.+.+.++++++++++.-.++..+-.+++++++++++|+|++++||+++++.++|+.++..++
T Consensus 13 ~~~~~~~~~vPA~lY-~~qn~L~~~al~~ld~~t~qvl~q~kIl~TAl~s~~~L~r~ls~~qW~aL~lL~~Gv~lv~~~~ 91 (244)
T PF04142_consen 13 SPKDTLKLAVPALLY-AIQNNLQFVALSYLDPSTFQVLSQSKILFTALFSVLLLKRRLSRRQWLALFLLVAGVVLVQLSS 91 (244)
T ss_pred hHHHHHHHHHHHHHH-HHHHHHHHHHHHhCCHHHHHHHHhhHHHHHHHHHHHHHHcccchhhHHHHHHHHHHHheeecCC
Confidence 457778888888876 8888999999999999999999999999999999999999999999999999999999988766
Q ss_pred CCC------CC------CchhhHHHHHHHHHHHHHHHHHHHHhhhccCC--ChHHHHHHHHHHHHHHHHHHHHhhcCCCC
Q 018398 253 FDE------SN------SSLWGSGEWWMLLAAQSMAVGTVMVRWVSKYS--DPVMATGWHMVIGGLPLMVISVLNHDPVY 318 (356)
Q Consensus 253 ~~~------~~------~~~~~~G~llaLlaa~~~a~~~v~~r~~~~~~--~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 318 (356)
... .. ......|.++.++++++-++..++.+|+.|+. +.+.......+.+.++.++.....+....
T Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~G~~~vl~~~~~S~~agVy~E~~lK~~~~s~~~~N~qL~~~gi~~~~~~~~~~~~~~~ 171 (244)
T PF04142_consen 92 SQSSDNSSSSSVHHDASNQNPLLGLLAVLAAAFLSGFAGVYFEKLLKRSNVSLWIQNMQLYLFGILFNLLALLLSDGSAI 171 (244)
T ss_pred ccccccccccccccccccchhHhHHHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHhccccccc
Confidence 221 11 12356899999999999999999999987654 66667777778888888777665443221
Q ss_pred C--cccccCCHHHHHHHHHHHHHHHHHHH
Q 018398 319 G--ESVKELTSSDILALLYTSIFGSAISY 345 (356)
Q Consensus 319 ~--~~~~~~~~~~~~~~~~lgi~~s~l~~ 345 (356)
. ..+...+...|..++..++.+-.+++
T Consensus 172 ~~~g~f~G~~~~~~~~i~~~a~gGllva~ 200 (244)
T PF04142_consen 172 SESGFFHGYSWWVWIVIFLQAIGGLLVAF 200 (244)
T ss_pred ccCCchhhcchHHHHHHHHHHHhhHHHHH
Confidence 1 11234455566666555544444443
No 29
>PRK11453 O-acetylserine/cysteine export protein; Provisional
Probab=99.20 E-value=1.4e-09 Score=101.37 Aligned_cols=138 Identities=15% Similarity=0.146 Sum_probs=109.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhccCCC---HHHHHHHHHHHHHHHHHHHHHHhCCC-------CCCChHHHHHHHHHH
Q 018398 115 LLEWAVLVSPFFFWGTAMVAMKEVLPKAG---TFFVAAFRLIPAGLLLITFASSQGRK-------LPSGFNAWVSIFLFA 184 (356)
Q Consensus 115 ~~g~l~ll~aa~~~~~~~~~~k~~~~~~~---p~~~~~~r~~~~~l~~~~~~~~~~~~-------~~~~~~~~~~~~~~g 184 (356)
..|.++.++++++|+...+..|...++.+ ......+...++.+.+.......+.. .......+..++..+
T Consensus 142 ~~G~~l~l~aal~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~ 221 (299)
T PRK11453 142 MLGFMLTLAAAFSWACGNIFNKKIMSHSTRPAVMSLVVWSALIPIIPFFVASLILDGSATMIHSLVTIDMTTILSLMYLA 221 (299)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcccCccchhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhhccCCHHHHHHHHHHH
Confidence 46899999999999999999998654333 23334444444444333332222211 123457788889999
Q ss_pred HHHHHHHHHHHHHHhhccChhHHHHHHhhHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHhhccC
Q 018398 185 LVDASCFQGFLAQGLQRTSAGLGSVIIDSQPLSVAVLAALLFGESIGLVGAGGLVLGVIGLLLLEAPA 252 (356)
Q Consensus 185 ~~~~~~~~~~~~~al~~~~~~~a~~i~~l~pv~~~il~~~~l~e~~~~~~~~g~~l~~~Gv~ll~~~~ 252 (356)
+++..++|.++++++++.++.+++.+..++|++..+++++++||+++..+++|.+++++|+++...+.
T Consensus 222 i~~t~~~~~l~~~~l~~~~a~~~s~~~~l~Pv~a~~~~~l~lgE~~~~~~~iG~~lI~~gv~l~~~~~ 289 (299)
T PRK11453 222 FVATIVGYGIWGTLLGRYETWRVAPLSLLVPVVGLASAALLLDERLTGLQFLGAVLIMAGLYINVFGL 289 (299)
T ss_pred HHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHhcch
Confidence 99999999999999999999999999999999999999999999999999999999999999887654
No 30
>PLN00411 nodulin MtN21 family protein; Provisional
Probab=99.20 E-value=7.6e-10 Score=105.21 Aligned_cols=136 Identities=13% Similarity=0.133 Sum_probs=105.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhccCCCH-HHHHHHHHHHHHHHHHHHHHHhCC-CC-----CCChHHHHHHHHHHHHH
Q 018398 115 LLEWAVLVSPFFFWGTAMVAMKEVLPKAGT-FFVAAFRLIPAGLLLITFASSQGR-KL-----PSGFNAWVSIFLFALVD 187 (356)
Q Consensus 115 ~~g~l~ll~aa~~~~~~~~~~k~~~~~~~p-~~~~~~r~~~~~l~~~~~~~~~~~-~~-----~~~~~~~~~~~~~g~~~ 187 (356)
..|.+++++++++|++..++.|....+.++ ...+++....+.+.+.+......+ .. ..... ....+..+++
T Consensus 188 ~lG~~l~l~aa~~wa~~~il~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-~~~i~y~~i~- 265 (358)
T PLN00411 188 LIGGALLTIQGIFVSVSFILQAHIMSEYPAAFTVSFLYTVCVSIVTSMIGLVVEKNNPSVWIIHFDIT-LITIVTMAII- 265 (358)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHhHHHHHHHHHHHHHHHHHHHHHccCCcccceeccchH-HHHHHHHHHH-
Confidence 458899999999999999999987776654 456667777666666555444322 11 11111 2234444544
Q ss_pred HHHHHHHHHHHhhccChhHHHHHHhhHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHhhccC
Q 018398 188 ASCFQGFLAQGLQRTSAGLGSVIIDSQPLSVAVLAALLFGESIGLVGAGGLVLGVIGLLLLEAPA 252 (356)
Q Consensus 188 ~~~~~~~~~~al~~~~~~~a~~i~~l~pv~~~il~~~~l~e~~~~~~~~g~~l~~~Gv~ll~~~~ 252 (356)
..++|.++++++++.+++.++++.+++|++++++++++++|++++.+++|.+++++|+++...+.
T Consensus 266 t~lay~lw~~~v~~~ga~~as~~~~L~PV~a~llg~l~LgE~lt~~~~iG~~LIl~Gv~l~~~~~ 330 (358)
T PLN00411 266 TSVYYVIHSWTVRHKGPLYLAIFKPLSILIAVVMGAIFLNDSLYLGCLIGGILITLGFYAVMWGK 330 (358)
T ss_pred HHHHHHHHHHHHhccCchHHHHHHhHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHhhh
Confidence 46788999999999999999999999999999999999999999999999999999999988654
No 31
>TIGR03340 phn_DUF6 phosphonate utilization associated putative membrane protein. This family of hydrophobic proteins has some homology to families of integral membrane proteins such as (pfam00892) and may be a permease. It occurs in the vicinity of various types of operons for the catabolism of phosphonates in Vibrio, Pseudomonas, Polaromonas and Thiomicrospira.
Probab=99.11 E-value=7.5e-10 Score=102.25 Aligned_cols=134 Identities=10% Similarity=0.037 Sum_probs=98.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhccCCCHH----HHHHHHHHHHHHHHHHHHHHhCCC-CCCChHHHHHHHHHHHHHHH
Q 018398 115 LLEWAVLVSPFFFWGTAMVAMKEVLPKAGTF----FVAAFRLIPAGLLLITFASSQGRK-LPSGFNAWVSIFLFALVDAS 189 (356)
Q Consensus 115 ~~g~l~ll~aa~~~~~~~~~~k~~~~~~~p~----~~~~~r~~~~~l~~~~~~~~~~~~-~~~~~~~~~~~~~~g~~~~~ 189 (356)
..+.++.++++++|+...+..|...++.++. ....+.+.+..+.+.++...++.. .......+......+.+...
T Consensus 143 ~~g~~~~l~aal~~a~~~i~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~ 222 (281)
T TIGR03340 143 RKAYAWALAAALGTAIYSLSDKAAALGVPAFYSALGYLGIGFLAMGWPFLLLYLKRHGRSMFPYARQILPSATLGGLMIG 222 (281)
T ss_pred hhHHHHHHHHHHHHHHhhhhccccccchhcccccHHHHHHHHHHHHHHHHHHHHHHhccchhhhHHHHHHHHHHHHHHHH
Confidence 3467788999999999999998765444432 233334433322222222222221 11222344555667777778
Q ss_pred HHHHHHHHHhhccChhHHHHHHhhHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHh
Q 018398 190 CFQGFLAQGLQRTSAGLGSVIIDSQPLSVAVLAALLFGESIGLVGAGGLVLGVIGLLLL 248 (356)
Q Consensus 190 ~~~~~~~~al~~~~~~~a~~i~~l~pv~~~il~~~~l~e~~~~~~~~g~~l~~~Gv~ll 248 (356)
.+|.++++++++.+++.++.+.+++|++..+++++++||++++.+++|++++++|++++
T Consensus 223 l~~~l~~~al~~~~a~~~~~~~~l~pv~a~l~g~~~lgE~~~~~~~iG~~lil~Gv~l~ 281 (281)
T TIGR03340 223 GAYALVLWAMTRLPVATVVALRNTSIVFAVVLGIWFLNERWYLTRLMGVCIIVAGLVVL 281 (281)
T ss_pred HHHHHHHHHHhhCCceEEEeecccHHHHHHHHHHHHhCCCccHHHHHHHHHHHHhHHhC
Confidence 89999999999999999999999999999999999999999999999999999999864
No 32
>TIGR00817 tpt Tpt phosphate/phosphoenolpyruvate translocator. specificities overlap.
Probab=99.03 E-value=4.7e-09 Score=97.93 Aligned_cols=138 Identities=17% Similarity=0.083 Sum_probs=108.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhcc--CCCHHHHHHHHHHHHHHHHHHHHHHhCCCC-CC-Ch---------HHHHH-H
Q 018398 115 LLEWAVLVSPFFFWGTAMVAMKEVLP--KAGTFFVAAFRLIPAGLLLITFASSQGRKL-PS-GF---------NAWVS-I 180 (356)
Q Consensus 115 ~~g~l~ll~aa~~~~~~~~~~k~~~~--~~~p~~~~~~r~~~~~l~~~~~~~~~~~~~-~~-~~---------~~~~~-~ 180 (356)
..|.++.++++++|+...+..|...+ +.+|..++.+....+.+.++|+....+... .. .. ..... .
T Consensus 144 ~~G~~~~l~a~~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 223 (302)
T TIGR00817 144 WAGFLSAMISNITFVSRNIFSKKAMTIKSLDKTNLYAYISIMSLFLLSPPAFITEGPPFLPHGFMQAISGVNVTKIYTVS 223 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccCCCCcccHHHHHHHHHHHHHHHHHHHHcchHHHHHHHHHhhcccCchHHHHHH
Confidence 56899999999999999999998877 799999999999999999998876543211 00 00 01111 2
Q ss_pred HHHHHHHHHHHHHHHHHHhhccChhHHHHHHhhHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHhhccC
Q 018398 181 FLFALVDASCFQGFLAQGLQRTSAGLGSVIIDSQPLSVAVLAALLFGESIGLVGAGGLVLGVIGLLLLEAPA 252 (356)
Q Consensus 181 ~~~g~~~~~~~~~~~~~al~~~~~~~a~~i~~l~pv~~~il~~~~l~e~~~~~~~~g~~l~~~Gv~ll~~~~ 252 (356)
+..+.......+.+++.+++++++..++++..+.|+++++++++++||+++..+++|.+++++|+.+.....
T Consensus 224 ~~~~~~~~~~~~~~~~~~l~~~sa~t~sv~~~l~pv~~~~~~~~~lge~lt~~~~~G~~lil~Gv~l~~~~k 295 (302)
T TIGR00817 224 LVAAMGFFHFYQQVAFMLLGRVSPLTHSVGNCMKRVVVIVVSILFFGTKISPQQVFGTGIAIAGVFLYSRVK 295 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHccCCchHHHHHhhhhhhheeeeehhhcCCCCchhHHHHHHHHHHHHHHHHHHh
Confidence 222332333344566789999999999999999999999999999999999999999999999999887643
No 33
>KOG1441 consensus Glucose-6-phosphate/phosphate and phosphoenolpyruvate/phosphate antiporter [Carbohydrate transport and metabolism; Amino acid transport and metabolism]
Probab=99.03 E-value=8.7e-09 Score=95.22 Aligned_cols=180 Identities=12% Similarity=0.054 Sum_probs=147.5
Q ss_pred HHHHhhhcc--CCC-HHHHHHHHHHHHHHHHHHHHHHhCCCCCC--ChHHHHHHHHHHHHHHHHHHHHHHHHhhccChhH
Q 018398 132 MVAMKEVLP--KAG-TFFVAAFRLIPAGLLLITFASSQGRKLPS--GFNAWVSIFLFALVDASCFQGFLAQGLQRTSAGL 206 (356)
Q Consensus 132 ~~~~k~~~~--~~~-p~~~~~~r~~~~~l~~~~~~~~~~~~~~~--~~~~~~~~~~~g~~~~~~~~~~~~~al~~~~~~~ 206 (356)
....|+..+ +.+ |..++.+++..+.+.++.....+..+.++ .+..+..++.+|++. +++..+-..++++.+++.
T Consensus 33 ~~~nK~il~~~~f~~p~~lt~~~~~~~~l~~~v~~~l~~~~~~~~~~~~~~~~llpl~~~~-~~~~v~~n~Sl~~v~VsF 111 (316)
T KOG1441|consen 33 IILNKYILSKYGFPFPITLTMLHLFCGALALLVIKVLKLVPPSKISSKLPLRTLLPLGLVF-CISHVLGNVSLSYVPVSF 111 (316)
T ss_pred EEeeHhhhccCCCCCccHHHHHHHHHHHHHHHHHHHhcCCCCCccccccchHHHHHHHHHH-HHHHHhcchhhhccchhH
Confidence 334777777 544 89999998877777777666554433322 345677777778776 788899999999999999
Q ss_pred HHHHHhhHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHhhccCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHhhhc
Q 018398 207 GSVIIDSQPLSVAVLAALLFGESIGLVGAGGLVLGVIGLLLLEAPAFDESNSSLWGSGEWWMLLAAQSMAVGTVMVRWVS 286 (356)
Q Consensus 207 a~~i~~l~pv~~~il~~~~l~e~~~~~~~~g~~l~~~Gv~ll~~~~~~~~~~~~~~~G~llaLlaa~~~a~~~v~~r~~~ 286 (356)
.+.+-.++|++++++++++.+|+.+...+..++..+.||.+....+ .+....|.+.++.+.+..++.+++.++..
T Consensus 112 ~q~iKa~~P~~tvl~~~~~~~~~~s~~~~lsL~piv~GV~ias~~e-----~~fn~~G~i~a~~s~~~~al~~I~~~~ll 186 (316)
T KOG1441|consen 112 YQTIKALMPPFTVLLSVLLLGKTYSSMTYLSLLPIVFGVAIASVTE-----LSFNLFGFISAMISNLAFALRNILSKKLL 186 (316)
T ss_pred HHHHHhhcchhHHHHHHHHhCCCCcceEEEEEEEeeeeEEEeeecc-----ccccHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 9999999999999999999999999999999999999999988744 34556899999999999999999999865
Q ss_pred c----CCChHHHHHHHHHHHHHHHH-HHHHhhcCCC
Q 018398 287 K----YSDPVMATGWHMVIGGLPLM-VISVLNHDPV 317 (356)
Q Consensus 287 ~----~~~~~~~~~~~~~~~~i~~~-~~~~~~~~~~ 317 (356)
+ +.|+.+.+.++.-++.+.++ |+....++..
T Consensus 187 ~~~~~~~~~~~ll~y~ap~s~~~Ll~P~~~~~~~~~ 222 (316)
T KOG1441|consen 187 TSKGESLNSMNLLYYTAPISLIFLLIPFLDYVEGNK 222 (316)
T ss_pred hccccccCchHHHHHhhhHHHHHHhcchHhhhcccc
Confidence 3 47899999999999999988 7776655543
No 34
>COG0697 RhaT Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]
Probab=98.99 E-value=4e-08 Score=90.38 Aligned_cols=135 Identities=24% Similarity=0.312 Sum_probs=110.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhccCCCHHHHHH-HHHHHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHHHHHHHH
Q 018398 115 LLEWAVLVSPFFFWGTAMVAMKEVLPKAGTFFVAA-FRLIPAGLLLITFASSQGRKLPSGFNAWVSIFLFALVDASCFQG 193 (356)
Q Consensus 115 ~~g~l~ll~aa~~~~~~~~~~k~~~~~~~p~~~~~-~r~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 193 (356)
..|.++.++++++|+...+..|... +.++..... +.+....+...+....... .+.....+......|+++.+.++.
T Consensus 153 ~~g~~~~l~a~~~~a~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~g~~~~~i~~~ 230 (292)
T COG0697 153 LLGLLLALAAALLWALYTALVKRLS-RLGPVTLALLLQLLLALLLLLLFFLSGFG-APILSRAWLLLLYLGVFSTGLAYL 230 (292)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhc-CCChHHHHHHHHHHHHHHHHHHHHhcccc-ccCCHHHHHHHHHHHHHHHHHHHH
Confidence 5789999999999999999999776 666666666 4444233333333322222 344567888899999999778999
Q ss_pred HHHHHhhccChhHHHHHHhhHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHhhcc
Q 018398 194 FLAQGLQRTSAGLGSVIIDSQPLSVAVLAALLFGESIGLVGAGGLVLGVIGLLLLEAP 251 (356)
Q Consensus 194 ~~~~al~~~~~~~a~~i~~l~pv~~~il~~~~l~e~~~~~~~~g~~l~~~Gv~ll~~~ 251 (356)
+++++++..+++.++.+..+.|++.+++++++++|+++..+++|++++++|+.+....
T Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~l~~~e~~~~~~~~G~~li~~g~~l~~~~ 288 (292)
T COG0697 231 LWYYALRLLGASLVALLSLLEPVFAALLGVLLLGEPLSPAQLLGAALVVLGVLLASLR 288 (292)
T ss_pred HHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHhcc
Confidence 9999999999999999999999999999999999999999999999999999988764
No 35
>PRK15430 putative chloramphenical resistance permease RarD; Provisional
Probab=98.98 E-value=1.8e-08 Score=93.68 Aligned_cols=132 Identities=14% Similarity=0.134 Sum_probs=92.8
Q ss_pred HHHHHHHHHHHHHHHHhhhccCC--CHHHHHHHHHHHHHHHHHHHHHHhCCCC-CCChHHHHHHHHHHHHHHHHHHHHHH
Q 018398 120 VLVSPFFFWGTAMVAMKEVLPKA--GTFFVAAFRLIPAGLLLITFASSQGRKL-PSGFNAWVSIFLFALVDASCFQGFLA 196 (356)
Q Consensus 120 ~ll~aa~~~~~~~~~~k~~~~~~--~p~~~~~~r~~~~~l~~~~~~~~~~~~~-~~~~~~~~~~~~~g~~~~~~~~~~~~ 196 (356)
+.++++++|+.+.+..|...++. +....+.+....+.+..+++........ ..+...+..+...|+. ..+++.+++
T Consensus 153 ~~l~aa~~~a~~~i~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~-t~i~~~~~~ 231 (296)
T PRK15430 153 IALGLAFSFAFYGLVRKKIAVEAQTGMLIETMWLLPVAAIYLFAIADSSTSHMGQNPMSLNLLLIAAGIV-TTVPLLCFT 231 (296)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHHHHHHHHccCCcccccCCcHHHHHHHHHHHHH-HHHHHHHHH
Confidence 46778999999999998865432 2333334444444333222211000001 1122223334444544 578999999
Q ss_pred HHhhccChhHHHHHHhhHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHhhccC
Q 018398 197 QGLQRTSAGLGSVIIDSQPLSVAVLAALLFGESIGLVGAGGLVLGVIGLLLLEAPA 252 (356)
Q Consensus 197 ~al~~~~~~~a~~i~~l~pv~~~il~~~~l~e~~~~~~~~g~~l~~~Gv~ll~~~~ 252 (356)
+++++.+++.++++.+++|++.+++++++++|+++..+++|++++++|+.++..++
T Consensus 232 ~a~~~~~a~~~s~~~~l~Pv~a~~~g~l~l~E~~~~~~~~G~~lI~~~~~v~~~~~ 287 (296)
T PRK15430 232 AAATRLRLSTLGFFQYIGPTLMFLLAVTFYGEKPGADKMVTFAFIWVALAIFVMDA 287 (296)
T ss_pred HHHhcCCHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999888754
No 36
>KOG2234 consensus Predicted UDP-galactose transporter [Carbohydrate transport and metabolism]
Probab=98.93 E-value=1.8e-06 Score=79.77 Aligned_cols=229 Identities=14% Similarity=0.042 Sum_probs=169.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhccC----CCHHHHHHHHHHHHHHHHHHHHHHhC----CCC----C----CChHHHHH
Q 018398 116 LEWAVLVSPFFFWGTAMVAMKEVLPK----AGTFFVAAFRLIPAGLLLITFASSQG----RKL----P----SGFNAWVS 179 (356)
Q Consensus 116 ~g~l~ll~aa~~~~~~~~~~k~~~~~----~~p~~~~~~r~~~~~l~~~~~~~~~~----~~~----~----~~~~~~~~ 179 (356)
.-++.++...+.++...+..|+.... ..|....+.--++-.+++....++.. ++. . ..+++.++
T Consensus 15 ~k~~~l~~~t~~~~~l~l~l~ys~~~~~~~f~~tt~v~~~Ei~Kl~~c~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~lk 94 (345)
T KOG2234|consen 15 MKYLSLIVLTAQNTALTLLLRYSRTREKPMFLPTTAVFLTEVIKLVFCLFLLLFEERKYAKKSLKSLSKEILAAPRETLK 94 (345)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHhcCCCCCcchhHHHHHHHHHHHHHHHHHHHHHhhHHhhhhhhhcCHHHHhChHHHHH
Confidence 44666777778888888888876542 55777777777777777777766652 111 1 12345666
Q ss_pred HHHHHHHHHHHHHHHHHHHhhccChhHHHHHHhhHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHhhccCC--C---
Q 018398 180 IFLFALVDASCFQGFLAQGLQRTSAGLGSVIIDSQPLSVAVLAALLFGESIGLVGAGGLVLGVIGLLLLEAPAF--D--- 254 (356)
Q Consensus 180 ~~~~g~~~~~~~~~~~~~al~~~~~~~a~~i~~l~pv~~~il~~~~l~e~~~~~~~~g~~l~~~Gv~ll~~~~~--~--- 254 (356)
+.+.+++- ++.+-++|.++.+.+++.-.+...+-.+.++++..++|++|++++||.++++-++|+.++-.+.. .
T Consensus 95 ~~vPa~iY-alqNnl~yval~~ldaatyqVt~qlKI~tTA~f~vl~L~rkLs~~Qw~Al~lL~~Gv~~vQ~~~~~~~~a~ 173 (345)
T KOG2234|consen 95 VSVPALIY-ALQNNLQYVALSNLDAATYQVTYQLKILTTAIFSVLILRRKLSRLQWMALVLLFAGVALVQLPSLSPTGAK 173 (345)
T ss_pred HHHHHHHH-HHhhhHHHHHHhcCCchhhhhhhhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhccCCCCCCcc
Confidence 77666665 66677999999999999999999999999999999999999999999999999999999984331 1
Q ss_pred -CCCCchhhHHHHHHHHHHHHHHHHHHHHhhhccC--CChHHHHHHHHHHHHHHHHHHHHhhcCCCC--CcccccCCHHH
Q 018398 255 -ESNSSLWGSGEWWMLLAAQSMAVGTVMVRWVSKY--SDPVMATGWHMVIGGLPLMVISVLNHDPVY--GESVKELTSSD 329 (356)
Q Consensus 255 -~~~~~~~~~G~llaLlaa~~~a~~~v~~r~~~~~--~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~--~~~~~~~~~~~ 329 (356)
.........|....+.+++.-+...++.+|+.++ .+.+...-...++|.++.+...+..+.... ...+...+...
T Consensus 174 ~~~~~~n~~~G~~avl~~c~~SgfAgvYfEkiLK~s~~s~wi~NiqL~~~g~~f~~l~~~~~d~~~i~~~gff~G~s~~v 253 (345)
T KOG2234|consen 174 SESSAQNPFLGLVAVLVACFLSGFAGVYFEKILKGSNVSLWIRNIQLYFFGILFNLLTILLQDGEAINEYGFFYGYSSIV 253 (345)
T ss_pred CCCcccchhhhHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHhhccccccccCCccccccHHH
Confidence 1223456689999999999999999999998754 566777777778888888888776643322 22334566777
Q ss_pred HHHHHHHHHHHHHHHH
Q 018398 330 ILALLYTSIFGSAISY 345 (356)
Q Consensus 330 ~~~~~~lgi~~s~l~~ 345 (356)
|..++..++.+-.++.
T Consensus 254 w~vVl~~a~gGLlvs~ 269 (345)
T KOG2234|consen 254 WLVVLLNAVGGLLVSL 269 (345)
T ss_pred HHHHHHHhccchhHHH
Confidence 7777666644444433
No 37
>COG5006 rhtA Threonine/homoserine efflux transporter [Amino acid transport and metabolism]
Probab=98.91 E-value=5.1e-08 Score=85.38 Aligned_cols=135 Identities=12% Similarity=0.056 Sum_probs=118.7
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHhhhccCCCHHHHHHHHHHHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHHHHHH
Q 018398 112 LGMLLEWAVLVSPFFFWGTAMVAMKEVLPKAGTFFVAAFRLIPAGLLLITFASSQGRKLPSGFNAWVSIFLFALVDASCF 191 (356)
Q Consensus 112 ~~~~~g~l~ll~aa~~~~~~~~~~k~~~~~~~p~~~~~~r~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 191 (356)
.-+..|..+.+.+..+|+.+.+..|.+....+--.-+..-+.+++++.+|+-..+....-..+.-....+..++++..+.
T Consensus 144 ~lDp~Gv~~Al~AG~~Wa~YIv~G~r~g~~~~g~~g~a~gm~vAaviv~Pig~~~ag~~l~~p~ll~laLgvavlSSalP 223 (292)
T COG5006 144 SLDPVGVALALGAGACWALYIVLGQRAGRAEHGTAGVAVGMLVAALIVLPIGAAQAGPALFSPSLLPLALGVAVLSSALP 223 (292)
T ss_pred cCCHHHHHHHHHHhHHHHHHHHHcchhcccCCCchHHHHHHHHHHHHHhhhhhhhcchhhcChHHHHHHHHHHHHhcccc
Confidence 34467899999999999999999998886677777778889999999999987665544445566777788899999999
Q ss_pred HHHHHHHhhccChhHHHHHHhhHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHH
Q 018398 192 QGFLAQGLQRTSAGLGSVIIDSQPLSVAVLAALLFGESIGLVGAGGLVLGVIGLL 246 (356)
Q Consensus 192 ~~~~~~al~~~~~~~a~~i~~l~pv~~~il~~~~l~e~~~~~~~~g~~l~~~Gv~ 246 (356)
|.+-..++++.|...-+++.+++|.+.++.++++++|+++..||++++.++.+..
T Consensus 224 YsLEmiAL~rlp~~~F~~LlSLePa~aAl~G~i~L~e~ls~~qwlaI~~ViaAsa 278 (292)
T COG5006 224 YSLEMIALRRLPARTFGTLLSLEPALAALSGLIFLGETLTLIQWLAIAAVIAASA 278 (292)
T ss_pred hHHHHHHHhhCChhHHHHHHHhhHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999999999999999988765
No 38
>PRK15051 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnE; Provisional
Probab=98.90 E-value=6.3e-08 Score=76.35 Aligned_cols=70 Identities=17% Similarity=0.156 Sum_probs=63.9
Q ss_pred HHHHHHHHHHHHHHHHHHhhccChhHHHHHHhhHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHhhc
Q 018398 181 FLFALVDASCFQGFLAQGLQRTSAGLGSVIIDSQPLSVAVLAALLFGESIGLVGAGGLVLGVIGLLLLEA 250 (356)
Q Consensus 181 ~~~g~~~~~~~~~~~~~al~~~~~~~a~~i~~l~pv~~~il~~~~l~e~~~~~~~~g~~l~~~Gv~ll~~ 250 (356)
...++++++.++.++.+++++.|.+.+..+..+.++++.+++++++|||+++.+++|++++++|++++..
T Consensus 40 ~~~~~~~~~l~~~~~~~al~~iplg~Ay~~~~l~~v~~~~~~~l~f~E~ls~~~~~Gi~lii~Gv~~i~~ 109 (111)
T PRK15051 40 LGLALACLGLAMVLWLLVLQNVPVGIAYPMLSLNFVWVTLAAVKLWHEPVSPRHWCGVAFIIGGIVILGS 109 (111)
T ss_pred HHHHHHHHHHHHHHHHHHHhhCChHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhc
Confidence 3445577788999999999999999999998899999999999999999999999999999999988864
No 39
>KOG3912 consensus Predicted integral membrane protein [General function prediction only]
Probab=98.88 E-value=1.3e-07 Score=83.97 Aligned_cols=182 Identities=20% Similarity=0.221 Sum_probs=136.0
Q ss_pred HHHHHHHhhhcc----C----CCHHHHHHHHHHHHHHHHHHHHHHhCCC------------CC---CChHHHHHHHHHHH
Q 018398 129 GTAMVAMKEVLP----K----AGTFFVAAFRLIPAGLLLITFASSQGRK------------LP---SGFNAWVSIFLFAL 185 (356)
Q Consensus 129 ~~~~~~~k~~~~----~----~~p~~~~~~r~~~~~l~~~~~~~~~~~~------------~~---~~~~~~~~~~~~g~ 185 (356)
..+.+..|++.. + -+|+..+..-++.-++.+..+.+.+.+. .+ .+.+. ...+..++
T Consensus 16 s~Ntl~aKwadsi~~eg~pgfqhpvlqal~mFlGEflCl~vf~lir~~sn~~g~~s~~~~ilsq~~~pf~p-~lfl~Pal 94 (372)
T KOG3912|consen 16 SFNTLVAKWADSIQAEGSPGFQHPVLQALLMFLGEFLCLAVFKLIRLRSNGQGVSSDLDSILSQDSSPFNP-VLFLPPAL 94 (372)
T ss_pred cHHHHHHHHHHhhhhhCCCccccHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccccccccccccCCCCc-ceecChHH
Confidence 457777887653 1 2477777777766666666665554211 00 01122 22233556
Q ss_pred HHHHHHHHHHHHHhhccChhHHHHHHhhHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHhhccCCC---C--CCCch
Q 018398 186 VDASCFQGFLAQGLQRTSAGLGSVIIDSQPLSVAVLAALLFGESIGLVGAGGLVLGVIGLLLLEAPAFD---E--SNSSL 260 (356)
Q Consensus 186 ~~~~~~~~~~~~al~~~~~~~a~~i~~l~pv~~~il~~~~l~e~~~~~~~~g~~l~~~Gv~ll~~~~~~---~--~~~~~ 260 (356)
+. ..+..+.+.++.+++++.-+++.....+|+.+++.-+++.+++.+||+|+....+|++++...+.. . .+.+.
T Consensus 95 ~D-i~gsslm~vgL~lTsASsfQMlRGaviIFvglfst~~Ln~ti~~~qWl~i~fv~lGlviVg~~d~~~~~~p~~d~s~ 173 (372)
T KOG3912|consen 95 CD-IAGSSLMYVGLNLTSASSFQMLRGAVIIFVGLFSTMFLNRTITGRQWLGILFVSLGLVIVGSLDVHLVTDPYTDYSS 173 (372)
T ss_pred HH-HhhhHHHHHHHHHhhHHHHHHhhcchhhhhHHHHHHHHhcccchhhHHHHHHHHhhhheeeeeecccccCCcccccc
Confidence 66 555688899999999999999999999999999999999999999999999999999998876521 1 12245
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhhhcc--CCChHHHHHHHHHHHHHHHHHHHHh
Q 018398 261 WGSGEWWMLLAAQSMAVGTVMVRWVSK--YSDPVMATGWHMVIGGLPLMVISVL 312 (356)
Q Consensus 261 ~~~G~llaLlaa~~~a~~~v~~r~~~~--~~~~~~~~~~~~~~~~i~~~~~~~~ 312 (356)
...|+++.+++-+.-|+.+++.+|..+ +.+|+...+|..++|.++...++..
T Consensus 174 iitGdllIiiaqiivaiQ~v~Eek~l~~~nV~pl~avg~eGlfG~v~~slL~i~ 227 (372)
T KOG3912|consen 174 IITGDLLIIIAQIIVAIQMVCEEKQLKKSNVAPLQAVGWEGLFGLVILSLLAIP 227 (372)
T ss_pred chhhhHHHHHHHHHHHHHHHHHHhhhhhccCCHHHHhhhhhhHHHHHHHHHHHH
Confidence 668999999999999999999988765 4689999999999997665555543
No 40
>PTZ00343 triose or hexose phosphate/phosphate translocator; Provisional
Probab=98.81 E-value=2.6e-07 Score=88.03 Aligned_cols=136 Identities=13% Similarity=0.088 Sum_probs=101.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhccC-------CCHHHHHHHHHHHHHHHHHHHHHHhCCC-C---------CCCh---
Q 018398 115 LLEWAVLVSPFFFWGTAMVAMKEVLPK-------AGTFFVAAFRLIPAGLLLITFASSQGRK-L---------PSGF--- 174 (356)
Q Consensus 115 ~~g~l~ll~aa~~~~~~~~~~k~~~~~-------~~p~~~~~~r~~~~~l~~~~~~~~~~~~-~---------~~~~--- 174 (356)
+.|.+++++++++|+...+..|...++ .++..+..+...++.++++|+....+.. . ....
T Consensus 193 ~~G~~~~l~s~~~~a~~~i~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lp~~~~~e~~~~~~~~~~~~~~~~~~~~ 272 (350)
T PTZ00343 193 WLAFWCAMLSNLGSSLRSIFAKKTMKNKSEIGENLTASNIYMLLTLIASLISLPLVLFFEGKKWVPVWTNYTANMTNYTK 272 (350)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcccccccccCCHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhhcccccch
Confidence 569999999999999999999987753 5577777777888888888887643211 0 0000
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhccChhHHHHHHhhHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHhhc
Q 018398 175 NAWVSIFLFALVDASCFQGFLAQGLQRTSAGLGSVIIDSQPLSVAVLAALLFGESIGLVGAGGLVLGVIGLLLLEA 250 (356)
Q Consensus 175 ~~~~~~~~~g~~~~~~~~~~~~~al~~~~~~~a~~i~~l~pv~~~il~~~~l~e~~~~~~~~g~~l~~~Gv~ll~~ 250 (356)
......++...+.+...+.+.+++++++++...++.+.+.|++++++++++++|+++..+++|.+++++|+++...
T Consensus 273 ~~~l~~i~~s~l~~~l~n~~~f~~l~~~s~~t~sv~~~lk~V~~iv~s~l~~ge~lt~~~~iG~~lii~Gv~lYs~ 348 (350)
T PTZ00343 273 GIIIFKIFFSGVWYYLYNEVAFYCLGKVNQVTHAVANTLKRVVIIVSSIIIFQTQVTLLGYLGMAVAILGALLYSL 348 (350)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHhhhhHHHhCCCCchHhHHHHHHHHHHHHHHhh
Confidence 1111122222222233333444699999999999999999999999999999999999999999999999987643
No 41
>TIGR00776 RhaT RhaT L-rhamnose-proton symporter family protein. These proteins are members of the L-Rhamnose Symporter (RhaT) Family (TC 2.A.7). This family includes two characterized members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.
Probab=98.78 E-value=1.5e-07 Score=87.35 Aligned_cols=129 Identities=14% Similarity=0.007 Sum_probs=103.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhccCCCHHHHHHHHHH----HHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHHHHH
Q 018398 115 LLEWAVLVSPFFFWGTAMVAMKEVLPKAGTFFVAAFRLI----PAGLLLITFASSQGRKLPSGFNAWVSIFLFALVDASC 190 (356)
Q Consensus 115 ~~g~l~ll~aa~~~~~~~~~~k~~~~~~~p~~~~~~r~~----~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 190 (356)
.+|++..+++++.|+......|.. +.+|...++.... .+.++..++ ++. .+...+..+..++.|++ ..+
T Consensus 151 ~~Gi~~~l~sg~~y~~~~~~~~~~--~~~~~~~~~~~~~g~~~~~~~~~~~~---~~~-~~~~~~~~~~~~~~Gi~-~~i 223 (290)
T TIGR00776 151 KKGILLLLMSTIGYLVYVVVAKAF--GVDGLSVLLPQAIGMVIGGIIFNLGH---ILA-KPLKKYAILLNILPGLM-WGI 223 (290)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHc--CCCcceehhHHHHHHHHHHHHHHHHH---hcc-cchHHHHHHHHHHHHHH-HHH
Confidence 469999999999999999999975 4788888555554 344334333 111 12223444555568888 589
Q ss_pred HHHHHHHHhh-ccChhHHHHHHhhHHHHHHHHHHHHhCCCCcHHHH----HHHHHHHHHHHHhhc
Q 018398 191 FQGFLAQGLQ-RTSAGLGSVIIDSQPLSVAVLAALLFGESIGLVGA----GGLVLGVIGLLLLEA 250 (356)
Q Consensus 191 ~~~~~~~al~-~~~~~~a~~i~~l~pv~~~il~~~~l~e~~~~~~~----~g~~l~~~Gv~ll~~ 250 (356)
++.+|+.+.+ +.+++.+.++...+|+...+++.+++||+.+++++ +|.++.+.|+.++..
T Consensus 224 a~~~y~~~~~~~~~~~~~~~ls~~~pvia~~~~v~~l~E~~~~~~~~~~~iG~~lIi~~~~l~~~ 288 (290)
T TIGR00776 224 GNFFYLFSAQPKVGVATSFSLSQLGVIISTLGGILILGEKKTKREMIAISVGIILIIIAANILGI 288 (290)
T ss_pred HHHHHHHHcccccchhhHHHHHHHHHHHHHHHHHHHhccCCCcceeehhHHHHHHHHHHHHHHhc
Confidence 9999999999 99999999999999999999999999999999999 999999999988754
No 42
>PRK02971 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnF; Provisional
Probab=98.77 E-value=2.6e-07 Score=74.69 Aligned_cols=120 Identities=16% Similarity=0.095 Sum_probs=92.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhccCCCHHHHHHHHHHHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHHHHHHHHHHH
Q 018398 117 EWAVLVSPFFFWGTAMVAMKEVLPKAGTFFVAAFRLIPAGLLLITFASSQGRKLPSGFNAWVSIFLFALVDASCFQGFLA 196 (356)
Q Consensus 117 g~l~ll~aa~~~~~~~~~~k~~~~~~~p~~~~~~r~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 196 (356)
++++.+++.++-+...++.|...++.+........ ...+. .. .....+++.|++++++++.++.
T Consensus 3 ~~~~i~~sv~l~~~gQl~~K~g~~~~g~~~~~~~~--~~~~~---~~-----------~~p~~~i~lgl~~~~la~~~w~ 66 (129)
T PRK02971 3 GYLWGLASVLLASVAQLSLKWGMSRLPLLSHAWDF--IAALL---AF-----------GLALRAVLLGLAGYALSMLCWL 66 (129)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHhhCCCccchhHH--HHHHH---HH-----------hccHHHHHHHHHHHHHHHHHHH
Confidence 67888888888888899999887766543322211 00000 00 1112246788888899999999
Q ss_pred HHhhccChhHHHHHHhhHHHHHHHHHHH--HhCCCCcHHHHHHHHHHHHHHHHhhccC
Q 018398 197 QGLQRTSAGLGSVIIDSQPLSVAVLAAL--LFGESIGLVGAGGLVLGVIGLLLLEAPA 252 (356)
Q Consensus 197 ~al~~~~~~~a~~i~~l~pv~~~il~~~--~l~e~~~~~~~~g~~l~~~Gv~ll~~~~ 252 (356)
+++++.+++.+..+....++++.+.++. ++||++++.+++|++++++|++++..++
T Consensus 67 ~aL~~~~ls~Ayp~~sl~~~~v~~~~~~~~~~~E~ls~~~~iGi~lIi~GV~lv~~~~ 124 (129)
T PRK02971 67 KALRYLPLSRAYPLLSLSYALVYLAAMLLPWFNETFSLKKTLGVACIMLGVWLINLPT 124 (129)
T ss_pred HHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhccCC
Confidence 9999999999999999999889888885 8999999999999999999999998754
No 43
>KOG1444 consensus Nucleotide-sugar transporter VRG4/SQV-7 [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.74 E-value=3.2e-06 Score=77.01 Aligned_cols=213 Identities=15% Similarity=0.125 Sum_probs=155.3
Q ss_pred HHHHHHhhhccCCC-HHHHHH--HHHHHHHHHHHHHHHHhCCCC-CCChHHHHHHHHHHHHHHHHHHHHHHHHhhccChh
Q 018398 130 TAMVAMKEVLPKAG-TFFVAA--FRLIPAGLLLITFASSQGRKL-PSGFNAWVSIFLFALVDASCFQGFLAQGLQRTSAG 205 (356)
Q Consensus 130 ~~~~~~k~~~~~~~-p~~~~~--~r~~~~~l~~~~~~~~~~~~~-~~~~~~~~~~~~~g~~~~~~~~~~~~~al~~~~~~ 205 (356)
...++.|.+....+ |..+.. .+++...+.+...-..+-.+. +..++..++.+-..++- .+..+.-..+++|.+..
T Consensus 26 lm~vvNK~vls~y~f~~~l~l~~~Q~l~s~~~v~~lk~~~lv~~~~l~~~~~kk~~P~~~lf-~~~i~t~~~slk~lnVp 104 (314)
T KOG1444|consen 26 LMTVVNKIVLSSYNFPMGLLLMLLQSLASVLVVLVLKRLGLVNFRPLDLRTAKKWFPVSLLF-VGMLFTGSKSLKYLNVP 104 (314)
T ss_pred HHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHhceeecCCcChHHHHHHccHHHHH-HHHHHHccccccccCch
Confidence 35667787777655 555555 888777766655544332222 33455555555555554 44445556899999999
Q ss_pred HHHHHHhhHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHhhccCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHhhh
Q 018398 206 LGSVIIDSQPLSVAVLAALLFGESIGLVGAGGLVLGVIGLLLLEAPAFDESNSSLWGSGEWWMLLAAQSMAVGTVMVRWV 285 (356)
Q Consensus 206 ~a~~i~~l~pv~~~il~~~~l~e~~~~~~~~g~~l~~~Gv~ll~~~~~~~~~~~~~~~G~llaLlaa~~~a~~~v~~r~~ 285 (356)
.-+++....|+++++....++|.+++...|..+....+|......++ .+....|+.+++...+.-+.+.+..|+.
T Consensus 105 m~tv~kn~tii~~ai~E~lf~~~~~~~~v~~Sv~~m~~~s~~~~~~d-----~sf~~~gY~w~~~n~~~~a~~~v~~kk~ 179 (314)
T KOG1444|consen 105 MFTVFKNLTIILTAIGEVLFFGKRPSNKVWASVFAMIIGSVAAAFTD-----LSFNLRGYSWALANCLTTAAFVVYVKKS 179 (314)
T ss_pred HHHHHhhchHHHHHHhHHhhcCcCchhhHHHHHHHHHHHHHhhcccc-----ceecchhHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999988888766 2233348999999999999999999986
Q ss_pred cc--CCChHHHHHHHHHHHHHHHHHHHHhhcCCC-CCccc-ccCCHHHHHHHHHHHHHHHHHHHHHH
Q 018398 286 SK--YSDPVMATGWHMVIGGLPLMVISVLNHDPV-YGESV-KELTSSDILALLYTSIFGSAISYGVY 348 (356)
Q Consensus 286 ~~--~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~-~~~~~-~~~~~~~~~~~~~lgi~~s~l~~~l~ 348 (356)
.+ +.+-...+.|..+.......+..++.++.. ...+. ...+...|..+...|+.+.++.|..+
T Consensus 180 vd~~~l~~~~lv~yNnl~~L~~l~~~~~~~ge~~~l~~~~~~~~~~~~~~~~~lScv~gf~isy~s~ 246 (314)
T KOG1444|consen 180 VDSANLNKFGLVFYNNLLSLPPLLILSFITGELDALSLNFDNWSDSSVLVVMLLSCVMGFGISYTSF 246 (314)
T ss_pred hccccccceeEEeehhHHHHHHHHHHHHHhcchHHHHhhcccccchhHHHHHHHHHHHHHHHHHHHH
Confidence 54 345667888888999888888887777633 11111 12345567778888887777777654
No 44
>PF03151 TPT: Triose-phosphate Transporter family; InterPro: IPR004853 This family consists entirely of aligned regions from Drosophila melanogaster proteins. O49724 from SWISSPROT contains three repeats of this region. In other proteins, the aligned region is located towards the C terminus. The function of the aligned region is unknown.
Probab=98.70 E-value=1.1e-06 Score=73.29 Aligned_cols=130 Identities=20% Similarity=0.196 Sum_probs=107.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhcc-------CCCHHHHHHHHHHHHHHHHHHHHHHhCCCC--------CC-----ChHH
Q 018398 117 EWAVLVSPFFFWGTAMVAMKEVLP-------KAGTFFVAAFRLIPAGLLLITFASSQGRKL--------PS-----GFNA 176 (356)
Q Consensus 117 g~l~ll~aa~~~~~~~~~~k~~~~-------~~~p~~~~~~r~~~~~l~~~~~~~~~~~~~--------~~-----~~~~ 176 (356)
|.++.+.+.++.+...+..|...+ +.++.++.......+.+++++.....+... .. ..+.
T Consensus 1 G~~~~l~s~~~~al~~v~~~~~~~~~~~~~~~~~~~~l~~~~~~~s~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~ 80 (153)
T PF03151_consen 1 GFILALASSLFSALRNVLIKKLLKKVSSNSKKLNPLNLLYYNSPISFIILLPLAFLLEGPQLSSFFSEIFGEELSSDPNF 80 (153)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHhhhhhhcchHHH
Confidence 467889999999999999886554 467999999999999999999887765332 00 1233
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccChhHHHHHHhhHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHH
Q 018398 177 WVSIFLFALVDASCFQGFLAQGLQRTSAGLGSVIIDSQPLSVAVLAALLFGESIGLVGAGGLVLGVIGLLL 247 (356)
Q Consensus 177 ~~~~~~~g~~~~~~~~~~~~~al~~~~~~~a~~i~~l~pv~~~il~~~~l~e~~~~~~~~g~~l~~~Gv~l 247 (356)
+..++..|++. +..+.+.+..++++++...+++...-.+++.++++++++|+++..+++|++++++|+++
T Consensus 81 ~~~~~~~~~~~-~~~n~~~f~~i~~tS~lt~~v~~~~K~~~~i~~s~~~f~~~~t~~~~~G~~l~~~G~~~ 150 (153)
T PF03151_consen 81 IFLLILSGLLA-FLYNLSSFLLIKLTSPLTYSVLGNVKRILVILLSVIFFGEPITPLQIIGIVLALVGVLL 150 (153)
T ss_pred HHHHHHHHHHH-HHHHHHHHHHhhhcChhHHHHHHHHHHHHHHHHHhhhcCCcCCHHHHHHHHHHHHHHhe
Confidence 44555556655 67778999999999999999999999999999999999999999999999999999875
No 45
>PF06800 Sugar_transport: Sugar transport protein; InterPro: IPR010651 This is a family of bacterial sugar transporters approximately 300 residues long. Members include glucose uptake proteins [], ribose transport proteins, and several putative and hypothetical membrane proteins probably involved in sugar transport across bacterial membranes.; GO: 0015144 carbohydrate transmembrane transporter activity, 0034219 carbohydrate transmembrane transport, 0016021 integral to membrane
Probab=98.69 E-value=6e-06 Score=74.55 Aligned_cols=167 Identities=13% Similarity=0.016 Sum_probs=122.1
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhhccChhHHHHH-HhhHHHHHHH
Q 018398 142 AGTFFVAAFRLIPAGLLLITFASSQGRKLPSGFNAWVSIFLFALVDASCFQGFLAQGLQRTSAGLGSVI-IDSQPLSVAV 220 (356)
Q Consensus 142 ~~p~~~~~~r~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~al~~~~~~~a~~i-~~l~pv~~~i 220 (356)
-+|.+..+.-...+.++-+...+..+.....+.+.+...++.|++- .+++..++.++++.+++.+-.+ ..++-+.+.+
T Consensus 10 G~~~~Q~lG~t~Gali~alv~~~~~~p~~~~~~~~~~~~~lsG~~W-~iGq~~qf~s~~~~GVS~tmPiStg~QLvg~sl 88 (269)
T PF06800_consen 10 GKPANQILGTTIGALIFALVVFLFRQPAFSMSGTSFIVAFLSGAFW-AIGQIGQFKSFKKIGVSKTMPISTGLQLVGTSL 88 (269)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHHH-HHHHHHHHHHHHHhcceeeeccchhHHHHHHHH
Confidence 3477776666666666665555555554433336666666667766 8899999999999999999977 6888888999
Q ss_pred HHHHHhCCCCcHHH----HHHHHHHHHHHHHhhccCCCCC---CCchhhHHHHHHHHHHHHHHHHHHHHhhhccCCChHH
Q 018398 221 LAALLFGESIGLVG----AGGLVLGVIGLLLLEAPAFDES---NSSLWGSGEWWMLLAAQSMAVGTVMVRWVSKYSDPVM 293 (356)
Q Consensus 221 l~~~~l~e~~~~~~----~~g~~l~~~Gv~ll~~~~~~~~---~~~~~~~G~llaLlaa~~~a~~~v~~r~~~~~~~~~~ 293 (356)
++.++++|--+..+ .+++++.++|+++....+.+.. +..+..+|.+..+++.+.|..|.+..|.. +.+++.
T Consensus 89 ~gv~~fgEW~~~~~~~~G~~Al~liiiGv~lts~~~~~~~~~~~~~~~~kgi~~Ll~stigy~~Y~~~~~~~--~~~~~~ 166 (269)
T PF06800_consen 89 IGVLFFGEWTTTTQKIIGFLALVLIIIGVILTSYQDKKSDKSSSKSNMKKGILALLISTIGYWIYSVIPKAF--HVSGWS 166 (269)
T ss_pred HHHhhcCCCCCcchHHHHHHHHHHHHHHHHHhccccccccccccccchhhHHHHHHHHHHHHHHHHHHHHhc--CCChhH
Confidence 99999999777665 4488899999999988763322 23456789999999999999999998874 567777
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 018398 294 ATGWHMVIGGLPLMVISV 311 (356)
Q Consensus 294 ~~~~~~~~~~i~~~~~~~ 311 (356)
...-+.+--.+...++..
T Consensus 167 ~~lPqaiGm~i~a~i~~~ 184 (269)
T PF06800_consen 167 AFLPQAIGMLIGAFIFNL 184 (269)
T ss_pred hHHHHHHHHHHHHHHHhh
Confidence 766554433333333333
No 46
>KOG4314 consensus Predicted carbohydrate/phosphate translocator [General function prediction only]
Probab=98.55 E-value=5.4e-07 Score=76.08 Aligned_cols=110 Identities=15% Similarity=0.063 Sum_probs=93.0
Q ss_pred HHHHHHHHHHhhccChhHHHHHHhhHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHhhccCCCCCCCchhhHHHHHH
Q 018398 189 SCFQGFLAQGLQRTSAGLGSVIIDSQPLSVAVLAALLFGESIGLVGAGGLVLGVIGLLLLEAPAFDESNSSLWGSGEWWM 268 (356)
Q Consensus 189 ~~~~~~~~~al~~~~~~~a~~i~~l~pv~~~il~~~~l~e~~~~~~~~g~~l~~~Gv~ll~~~~~~~~~~~~~~~G~lla 268 (356)
.+.++.|..|++..++++++.+....-.|+.+++++.+|+|+...++++.++++.|++++...+. . ..+-+.|..++
T Consensus 64 t~aNY~Yl~AL~~is~s~asai~~CNaAFVfiLa~IVL~D~~~~~kIlaailAI~GiVmiay~DN--~-~a~e~iGi~~A 140 (290)
T KOG4314|consen 64 TGANYLYLLALKKISASDASAIFACNAAFVFILAIIVLGDRFMGFKILAAILAIGGIVMIAYADN--E-HADEIIGIACA 140 (290)
T ss_pred ecCCcHHHHHHHhcChhhhHHHHHhhHHHHHHHHHHHhccchhhhhHHHHHHHhCcEEEEEeccc--h-hhhhhhhHHHH
Confidence 45678999999999999999999999999999999999999999999999999999999986441 1 22345799999
Q ss_pred HHHHHHHHHHHHHHhhhccCCChHHHHHHHHHH
Q 018398 269 LLAAQSMAVGTVMVRWVSKYSDPVMATGWHMVI 301 (356)
Q Consensus 269 Llaa~~~a~~~v~~r~~~~~~~~~~~~~~~~~~ 301 (356)
..+|..-++|-+.-|++....+.-...-+....
T Consensus 141 V~SA~~aAlYKV~FK~~iGnAn~Gdaa~FmS~L 173 (290)
T KOG4314|consen 141 VGSAFMAALYKVLFKMFIGNANFGDAAHFMSCL 173 (290)
T ss_pred HHHHHHHHHHHHHHHHHhccCcchhHHHHHHHH
Confidence 999999999999999987766655544444433
No 47
>PRK13499 rhamnose-proton symporter; Provisional
Probab=98.54 E-value=0.00014 Score=68.34 Aligned_cols=165 Identities=12% Similarity=0.033 Sum_probs=114.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhhhccCCCHHHHHHHHHHHHHHHHHHHHHH--hCCC----CC-CChHHHHHHHHHHH
Q 018398 113 GMLLEWAVLVSPFFFWGTAMVAMKEVLPKAGTFFVAAFRLIPAGLLLITFASS--QGRK----LP-SGFNAWVSIFLFAL 185 (356)
Q Consensus 113 ~~~~g~l~ll~aa~~~~~~~~~~k~~~~~~~p~~~~~~r~~~~~l~~~~~~~~--~~~~----~~-~~~~~~~~~~~~g~ 185 (356)
+...|++..+++.++||+.++..|+ .++- ++|....-..+-.-++.|+..- ..+. .. .+.+.+...++.|+
T Consensus 4 ~~~~G~~~~~i~~~~~GS~~~p~K~-~k~w-~wE~~W~v~gi~~wl~~~~~~g~~~~~~f~~~~~~~~~~~~~~~~l~G~ 81 (345)
T PRK13499 4 AIILGIIWHLIGGASSGSFYAPFKK-VKKW-SWETMWSVGGIFSWLILPWLIAALLLPDFWAYYSSFSGSTLLPVFLFGA 81 (345)
T ss_pred hhHHHHHHHHHHHHHhhcccccccc-cCCC-chhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhcCHHHHHHHHHHHH
Confidence 3467999999999999999999998 4433 3332221111111111121110 0011 11 23456666666666
Q ss_pred HHHHHHHHHHHHHhhccChhHHHHH-HhhHHHHHHHHHHHHhCCCC-------cHHHHHHHHHHHHHHHHhhc----cCC
Q 018398 186 VDASCFQGFLAQGLQRTSAGLGSVI-IDSQPLSVAVLAALLFGESI-------GLVGAGGLVLGVIGLLLLEA----PAF 253 (356)
Q Consensus 186 ~~~~~~~~~~~~al~~~~~~~a~~i-~~l~pv~~~il~~~~l~e~~-------~~~~~~g~~l~~~Gv~ll~~----~~~ 253 (356)
+- ..++..++.++++.+.+.+..+ ..+.-++..++..++++|=. .....+|++++++|+++... .+.
T Consensus 82 ~W-~iG~i~~~~s~~~iGvS~~~pIs~Gl~lv~gtL~~~i~~gew~~~~~t~~g~~~~~gv~liliGi~l~s~Ag~~k~~ 160 (345)
T PRK13499 82 LW-GIGGITYGLTMRYLGMSLGIGIAIGITLIVGTLMPPIINGNFDVLLATNGGRMTLLGVLVALIGVAIVGRAGQLKER 160 (345)
T ss_pred HH-HhhhhhHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHccccccccccchHHHHHHHHHHHHHHHHHHHHhhhhccc
Confidence 66 8889999999999999999866 89999999999999988643 34568999999999999998 432
Q ss_pred CC----CCCchhhHHHHHHHHHHHHHHHHHH
Q 018398 254 DE----SNSSLWGSGEWWMLLAAQSMAVGTV 280 (356)
Q Consensus 254 ~~----~~~~~~~~G~llaLlaa~~~a~~~v 280 (356)
+. ....+..+|.++++++.+.+++|+.
T Consensus 161 ~~~~~~~~~~~~~KGi~ialisgi~~~~f~~ 191 (345)
T PRK13499 161 KMGIKKAEEFNLKKGLILAVMSGIFSACFSF 191 (345)
T ss_pred ccccccccccchHhHHHHHHHHHHHHHHHHH
Confidence 11 2234567999999999999999994
No 48
>KOG1443 consensus Predicted integral membrane protein [Function unknown]
Probab=98.53 E-value=4.7e-06 Score=75.13 Aligned_cols=202 Identities=11% Similarity=0.061 Sum_probs=144.5
Q ss_pred cCCC-HHHHHHHHHHHHHHHHHHHHHHhCCC-----CCCChHHHHHHHHHHHHHHHHHHHHHHHHhhccChhHHHHHHhh
Q 018398 140 PKAG-TFFVAAFRLIPAGLLLITFASSQGRK-----LPSGFNAWVSIFLFALVDASCFQGFLAQGLQRTSAGLGSVIIDS 213 (356)
Q Consensus 140 ~~~~-p~~~~~~r~~~~~l~~~~~~~~~~~~-----~~~~~~~~~~~~~~g~~~~~~~~~~~~~al~~~~~~~a~~i~~l 213 (356)
.+++ |..++...+++-.++-.......+.. .+..|++..+-.....+..++.-.+-.++++|++.+.-++....
T Consensus 40 ~~f~fPLf~ts~h~~v~flfa~~~~~l~~~~~~r~r~~~sw~~~Lr~~aPtalata~DIGLSN~sl~yVtlSlYTM~KSS 119 (349)
T KOG1443|consen 40 KNFHFPLFVTSLHLAVKFLFAALSRRLYQCSVPRARVVLSWRDYLRRLAPTALATALDIGLSNWSLEYVTLSLYTMTKSS 119 (349)
T ss_pred cCcCCchHHHHHHHHHHHHHHHHHHHHHhccCCccccCCcHHHHHHHhhhhhhhhhcccccccceeeeeeeeeeeecccc
Confidence 3455 88888888887766655554433222 23455555544444444447777788899999999999999999
Q ss_pred HHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHhhccCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHhhhccC-----
Q 018398 214 QPLSVAVLAALLFGESIGLVGAGGLVLGVIGLLLLEAPAFDESNSSLWGSGEWWMLLAAQSMAVGTVMVRWVSKY----- 288 (356)
Q Consensus 214 ~pv~~~il~~~~l~e~~~~~~~~g~~l~~~Gv~ll~~~~~~~~~~~~~~~G~llaLlaa~~~a~~~v~~r~~~~~----- 288 (356)
.++|+.+++.+|-=||+++.-..-+.++.+|+++....+ .+....|..+.+++.++-++-..+.+.+.++
T Consensus 120 si~FIllFs~if~lEk~~w~L~l~v~lI~~Glflft~Ks-----Tqf~i~Gf~lv~~aS~~sGlRW~~tQ~ll~~~~~~~ 194 (349)
T KOG1443|consen 120 SILFILLFSLIFKLEKFRWALVLIVLLIAVGLFLFTYKS-----TQFNIEGFFLVLAASLLSGLRWAFTQMLLRNQPSAK 194 (349)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHhhheeEEEecc-----cceeehhHHHHHHHHHhhhhhHHHHHHHHhcCcccc
Confidence 999999999999889999999999999999999988866 2234569999999999998888888776654
Q ss_pred CChHHHHHHHHHHHHHHHHHHHHhhcCCCCC---cccccCCH-HHHHHHHHHHHHHHHHHHHH
Q 018398 289 SDPVMATGWHMVIGGLPLMVISVLNHDPVYG---ESVKELTS-SDILALLYTSIFGSAISYGV 347 (356)
Q Consensus 289 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~---~~~~~~~~-~~~~~~~~lgi~~s~l~~~l 347 (356)
.+|...+....-.-.+.+++..+.+|++... ..+...+. ..+..+.+++ .+..++|.+
T Consensus 195 ~~P~~ti~~l~p~M~~~Ll~~~l~fEG~~~~~~s~~f~~~d~~~~~rv~g~i~-l~g~laF~l 256 (349)
T KOG1443|consen 195 RNPIDTIFHLQPWMSIGLLPLSLLFEGLHLITSSSIFRFQDTGLILRVIGLIS-LGGLLAFLL 256 (349)
T ss_pred CCCeeeHHHhhhHHHHHHHHHHHHHcccccchhhhHHHhcCccHHHHHHHHHH-HHHHHHHHH
Confidence 3577777777777778888888888876532 11122232 2344444454 455555554
No 49
>KOG1581 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]
Probab=98.48 E-value=2.2e-05 Score=70.86 Aligned_cols=211 Identities=11% Similarity=0.008 Sum_probs=158.9
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhhccChhHHHHHHhhHHHHHHHHH
Q 018398 143 GTFFVAAFRLIPAGLLLITFASSQGRKLPSGFNAWVSIFLFALVDASCFQGFLAQGLQRTSAGLGSVIIDSQPLSVAVLA 222 (356)
Q Consensus 143 ~p~~~~~~r~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~al~~~~~~~a~~i~~l~pv~~~il~ 222 (356)
++..+.+.+-+++.++-..++..+++. ....+.|+.+...++-+ .++-.|.+.|++|++=-.-.+--..--+-+++++
T Consensus 50 ~~~fL~~~q~l~~~~~s~~~l~~~k~~-~~~~apl~~y~~is~tn-~~s~~~~yeaLKyvSyPtq~LaKscKmIPVmlmg 127 (327)
T KOG1581|consen 50 HSLFLVFCQRLVALLVSYAMLKWWKKE-LSGVAPLYKYSLISFTN-TLSSWCGYEALKYVSYPTQTLAKSCKMIPVMLMG 127 (327)
T ss_pred ccHHHHHHHHHHHHHHHHHHHhccccc-CCCCCchhHHhHHHHHh-hcchHHHHHHHHhccchHHHHHHHhhhhHHHHHH
Confidence 588888888888888776555444444 33447788888888888 5666899999999998888887777777788999
Q ss_pred HHHhCCCCcHHHHHHHHHHHHHHHHhhccCCCC----CCCchhhHHHHHHHHHHHHHHHHHHHHhhhcc--CCChHHHHH
Q 018398 223 ALLFGESIGLVGAGGLVLGVIGLLLLEAPAFDE----SNSSLWGSGEWWMLLAAQSMAVGTVMVRWVSK--YSDPVMATG 296 (356)
Q Consensus 223 ~~~l~e~~~~~~~~g~~l~~~Gv~ll~~~~~~~----~~~~~~~~G~llaLlaa~~~a~~~v~~r~~~~--~~~~~~~~~ 296 (356)
.++.|.|++..+.+..+++-+|+-+....+.++ ....+...|..+....-+.=++.+....++-+ +.+...+++
T Consensus 128 ~Lvy~~ky~~~eYl~~~LIs~GvsiF~l~~~s~s~~~~g~~ns~~G~~Ll~~~L~fDgfTn~tQd~lf~~~k~s~~~mM~ 207 (327)
T KOG1581|consen 128 TLVYGRKYSSFEYLVAFLISLGVSIFSLFPNSDSSSKSGRENSPIGILLLFGYLLFDGFTNATQDSLFKKYKVSSLHMMF 207 (327)
T ss_pred HHHhcCccCcHHHHHHHHHHhheeeEEEecCCCCccccCCCCchHhHHHHHHHHHHHhhHHhHHHHHhccCCccHhHHHH
Confidence 999999999999999999999998887754222 12234457998888888888888888777655 467899999
Q ss_pred HHHHHHHHHHHHHHHhhcCCCCCcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCC
Q 018398 297 WHMVIGGLPLMVISVLNHDPVYGESVKELTSSDILALLYTSIFGSAISYGVYFYSATKGK 356 (356)
Q Consensus 297 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lgi~~s~l~~~l~~~al~~~g 356 (356)
+..+++++......+..+.....-.+....++.+.-++..+ .|.++++.+.++-+++.|
T Consensus 208 ~vNLf~~i~~~~~li~qg~~~~av~F~~~hp~~~~Di~l~s-~~gavGQ~FI~~TI~~FG 266 (327)
T KOG1581|consen 208 GVNLFSAILNGTYLILQGHLLPAVSFIKEHPDVAFDILLYS-TCGAVGQLFIFYTIERFG 266 (327)
T ss_pred HHHHHHHHHHHHhhhcCCCCchHHHHHHcChhHHHHHHHHH-HhhhhhhheehhhHhhcc
Confidence 99999999988885443322111112334667788888888 688888888888777755
No 50
>PF05653 Mg_trans_NIPA: Magnesium transporter NIPA; InterPro: IPR008521 This family consists of several eukaryotic proteins of unknown function.
Probab=98.47 E-value=1e-05 Score=75.12 Aligned_cols=123 Identities=17% Similarity=0.109 Sum_probs=90.4
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHhhhccCCCHHHHHHHHHHHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHHHHH
Q 018398 111 ELGMLLEWAVLVSPFFFWGTAMVAMKEVLPKAGTFFVAAFRLIPAGLLLITFASSQGRKLPSGFNAWVSIFLFALVDASC 190 (356)
Q Consensus 111 ~~~~~~g~l~ll~aa~~~~~~~~~~k~~~~~~~p~~~~~~r~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 190 (356)
+.....|.++.+.++++-+....+.|+...+.+. .-.|- +.......++ ..++.|++....
T Consensus 2 ~~~~~iGv~lav~ss~~~~~g~~lqk~~~~r~~~---~~~~~--------------~~~~~~~l~~--~~W~~G~~~~~~ 62 (300)
T PF05653_consen 2 NTDFYIGVLLAVVSSIFIAVGFNLQKKSHLRLPR---GSLRA--------------GSGGRSYLRR--PLWWIGLLLMVL 62 (300)
T ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc---ccccc--------------cchhhHHHhh--HHHHHHHHHHhc
Confidence 3455779999999999999999999986442221 00000 0000000111 223345555566
Q ss_pred HHHHHHHHhhccChhHHHHHHhhHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHhhccC
Q 018398 191 FQGFLAQGLQRTSAGLGSVIIDSQPLSVAVLAALLFGESIGLVGAGGLVLGVIGLLLLEAPA 252 (356)
Q Consensus 191 ~~~~~~~al~~~~~~~a~~i~~l~pv~~~il~~~~l~e~~~~~~~~g~~l~~~Gv~ll~~~~ 252 (356)
+..+.+.|+.+.|++..+.+..+.-++.++++..++|||+++.+++|++++++|..++..-.
T Consensus 63 g~~~~~~Al~~ap~slv~Plg~~~lv~~~~~a~~~l~e~~~~~~~~G~~l~i~G~~liv~~~ 124 (300)
T PF05653_consen 63 GEILNFVALGFAPASLVAPLGALSLVFNAVLARFFLGEKLTRRDIVGCALIILGSVLIVIFA 124 (300)
T ss_pred chHHHHHHHHhhhHHHHHHHHhhhhhhHHHHhHHHhcccchHhHHhhHHHHHhhheeeEEeC
Confidence 77888999999999999999999999999999999999999999999999999998877544
No 51
>KOG1442 consensus GDP-fucose transporter [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.46 E-value=1.1e-06 Score=77.82 Aligned_cols=206 Identities=15% Similarity=0.145 Sum_probs=144.0
Q ss_pred HHhhhccC----CC-HHHHHHHHHHHHHHHHHHHHHHhCC--------CCCCCh---HHHHHHHHHHHHHHHHHHHHHHH
Q 018398 134 AMKEVLPK----AG-TFFVAAFRLIPAGLLLITFASSQGR--------KLPSGF---NAWVSIFLFALVDASCFQGFLAQ 197 (356)
Q Consensus 134 ~~k~~~~~----~~-p~~~~~~r~~~~~l~~~~~~~~~~~--------~~~~~~---~~~~~~~~~g~~~~~~~~~~~~~ 197 (356)
..|++.+. ++ |..++..+.++...+++.+.....+ ..+.+. ++...+...=.. ...+-.+
T Consensus 46 ~nk~llss~~~~Ld~plf~t~~qcLvt~~~c~~ls~ls~k~~~~ftfp~~~ldl~t~r~vlplsvVfi~----mI~fnnl 121 (347)
T KOG1442|consen 46 LNKHLLSSLVVILDAPLFITWYQCLVTTSICLVLSSLSVKYPGLFTFPSLQLDLATARQVLPLSVVFIL----MISFNNL 121 (347)
T ss_pred hHHHHhhchhhhcCcHHHHHHHHHHHHHHHHHHHHHHHhhccceeccCcccccHHHHHhhcchhheeee----ehhccce
Confidence 34554442 44 9999999999888888776543321 111222 233333322222 2234457
Q ss_pred HhhccChhHHHHHHhhHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHhhccCCCCCCCchhhHHHHHHHHHHHHHHH
Q 018398 198 GLQRTSAGLGSVIIDSQPLSVAVLAALLFGESIGLVGAGGLVLGVIGLLLLEAPAFDESNSSLWGSGEWWMLLAAQSMAV 277 (356)
Q Consensus 198 al~~~~~~~a~~i~~l~pv~~~il~~~~l~e~~~~~~~~g~~l~~~Gv~ll~~~~~~~~~~~~~~~G~llaLlaa~~~a~ 277 (356)
.++|++++.-.+-..+..+|++++.++++|+|-+.....++.++++|-.+=...+ +..+.....|.+++.++.++-|+
T Consensus 122 cL~yVgVaFYyvgRsLttvFtVlLtyvllkqkTs~~~~~~C~lIi~GF~lGvdqE--~~~~~ls~~GvifGVlaSl~vAl 199 (347)
T KOG1442|consen 122 CLKYVGVAFYYVGRSLTTVFTVLLTYVLLKQKTSFFALGCCLLIILGFGLGVDQE--GSTGTLSWIGVIFGVLASLAVAL 199 (347)
T ss_pred ehhhcceEEEEeccchhhhHHHHhHHhhcccccccccceeehhheehheeccccc--cccCccchhhhHHHHHHHHHHHH
Confidence 8999999988888999999999999999999999999888888888865544333 33334456799999999999999
Q ss_pred HHHHHhhhccCC--ChHHHHHHHHHHHHHHHHHHHHhhcCCCCCccccc-CCHHHHHHHHHHHHHHHHHHH
Q 018398 278 GTVMVRWVSKYS--DPVMATGWHMVIGGLPLMVISVLNHDPVYGESVKE-LTSSDILALLYTSIFGSAISY 345 (356)
Q Consensus 278 ~~v~~r~~~~~~--~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~lgi~~s~l~~ 345 (356)
..+..|+..... -.+...+|..+.+.+.++|...+.++...-...++ ++.+.|..+..-|+++..++|
T Consensus 200 naiytkk~l~~v~~~iw~lt~ynnv~a~lLflpll~lnge~~~v~~~~~l~a~~Fw~~mtLsglfgF~mgy 270 (347)
T KOG1442|consen 200 NAIYTKKVLPPVGDCIWRLTAYNNVNALLLFLPLLILNGEFQAVVGFPHLPAIKFWILMTLSGLFGFAMGY 270 (347)
T ss_pred HHHhhheecccccCeehhhHHHHHHHHHHHHHHHHHHcchHHHHcCcccchHHHHHHHHHHHHHHHHHhhh
Confidence 999999865433 36778889999999999999998775432111122 356677777777777666655
No 52
>KOG1580 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]
Probab=98.45 E-value=2.3e-06 Score=74.27 Aligned_cols=208 Identities=10% Similarity=0.001 Sum_probs=144.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhCC-CCCCChHHHHHHHHHHHHHHHHHHHHHHHHhhccChhHHHHHHhhHHHHHHHHH
Q 018398 144 TFFVAAFRLIPAGLLLITFASSQGR-KLPSGFNAWVSIFLFALVDASCFQGFLAQGLQRTSAGLGSVIIDSQPLSVAVLA 222 (356)
Q Consensus 144 p~~~~~~r~~~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~~~~~~~~~~~al~~~~~~~a~~i~~l~pv~~~il~ 222 (356)
...+.+++.....++.=.+...+++ +... .+.+... .....+.++......|++++|=-...+--+.-|+=+++++
T Consensus 53 alaLVf~qC~~N~vfAkvl~~ir~~~~~D~-t~~~~Ya--Acs~sYLlAMVssN~Alq~vpYPTqVlgKScKPIPVMilG 129 (337)
T KOG1580|consen 53 ALALVFFQCTANTVFAKVLFLIRKKTEIDN-TPTKMYA--ACSASYLLAMVSSNQALQYVPYPTQVLGKSCKPIPVMILG 129 (337)
T ss_pred HHHHHHHHHHHHHHHHHhheeecccccccC-CcchHHH--HHHHHHHHHHHhccchhcccCCcHHHhcccCCCcceeeee
Confidence 4445555555555444333333332 2221 1233322 2344456666777899999999988888999999999999
Q ss_pred HHHhCCCCcHHHHHHHHHHHHHHHHhhccCC--CCCCCchhhHHHHHHHHHHHHHHHHHHHHhhhccCC--ChHHHHHHH
Q 018398 223 ALLFGESIGLVGAGGLVLGVIGLLLLEAPAF--DESNSSLWGSGEWWMLLAAQSMAVGTVMVRWVSKYS--DPVMATGWH 298 (356)
Q Consensus 223 ~~~l~e~~~~~~~~g~~l~~~Gv~ll~~~~~--~~~~~~~~~~G~llaLlaa~~~a~~~v~~r~~~~~~--~~~~~~~~~ 298 (356)
.++.+++..|++...++++++||.+.+..+. .+........|.++.+++-.+=++......+++..+ ....++.+.
T Consensus 130 Vl~~~KsY~w~kY~cVL~IV~GValFmYK~~Kv~g~e~~t~g~GElLL~lSL~mDGlTg~~Qdrira~yq~~g~~MM~~~ 209 (337)
T KOG1580|consen 130 VLFAHKSYHWRKYCCVLMIVVGVALFMYKENKVGGAEDKTFGFGELLLILSLAMDGLTGSIQDRIRASYQRTGTSMMFYT 209 (337)
T ss_pred hhhhcccccHHHHHHHHHHHHHHHHhhccccccCCCcccccchHHHHHHHHHHhcccchhHHHHHHHhhccCchhhHHHH
Confidence 9999999999999999999999999998752 233445667899999999999999998887776543 455677788
Q ss_pred HHHHHHHHHHHHHhhcCCCCCcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Q 018398 299 MVIGGLPLMVISVLNHDPVYGESVKELTSSDILALLYTSIFGSAISYGVYFYSATKG 355 (356)
Q Consensus 299 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lgi~~s~l~~~l~~~al~~~ 355 (356)
.+.+.+.+...+++.++..-...+...-+..|+-+..++ +++.+++++.+.-+...
T Consensus 210 NlwStL~Lg~g~lfTGElweF~yF~~RhP~~~~~l~l~a-i~s~LGQ~fIF~tv~~F 265 (337)
T KOG1580|consen 210 NLWSTLYLGAGLLFTGELWEFFYFVQRHPYVFWDLTLLA-IASCLGQWFIFKTVEEF 265 (337)
T ss_pred HHHHHHHhhhhheehhhHHHHHHHHHhccHHHHHHHHHH-HHHHhhhHHHHHHHHHh
Confidence 888887777766665442110111233456777777788 78889988877765543
No 53
>PF06027 DUF914: Eukaryotic protein of unknown function (DUF914); InterPro: IPR009262 This family consists of several hypothetical proteins of unknown function. Some of the sequences in this family are annotated as putative membrane proteins.
Probab=98.28 E-value=3.5e-05 Score=72.26 Aligned_cols=140 Identities=10% Similarity=0.040 Sum_probs=109.2
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHhhhccCCCHHHHHHHHHHHHHHHHHHHHHHhCC-C---CCCChHHHHHHHHHHHHH
Q 018398 112 LGMLLEWAVLVSPFFFWGTAMVAMKEVLPKAGTFFVAAFRLIPAGLLLITFASSQGR-K---LPSGFNAWVSIFLFALVD 187 (356)
Q Consensus 112 ~~~~~g~l~ll~aa~~~~~~~~~~k~~~~~~~p~~~~~~r~~~~~l~~~~~~~~~~~-~---~~~~~~~~~~~~~~g~~~ 187 (356)
.+..+|.++++++++++|...+..+...++.++.++..+=-+.+.++..+.+...++ . .....+....++.. .++
T Consensus 164 ~~~i~GDll~l~~a~lya~~nV~~E~~v~~~~~~~~lg~~Glfg~ii~~iq~~ile~~~i~~~~w~~~~~~~~v~~-~~~ 242 (334)
T PF06027_consen 164 SNPILGDLLALLGAILYAVSNVLEEKLVKKAPRVEFLGMLGLFGFIISGIQLAILERSGIESIHWTSQVIGLLVGY-ALC 242 (334)
T ss_pred CccchhHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHHheehhhhhccCCChhhHHHHHHH-HHH
Confidence 355789999999999999999999999999998887777666777776666554332 1 22233433333333 334
Q ss_pred HHHHHHHHHHHhhccChhHHHHHHhhHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHhhccC
Q 018398 188 ASCFQGFLAQGLQRTSAGLGSVIIDSQPLSVAVLAALLFGESIGLVGAGGLVLGVIGLLLLEAPA 252 (356)
Q Consensus 188 ~~~~~~~~~~al~~~~~~~a~~i~~l~pv~~~il~~~~l~e~~~~~~~~g~~l~~~Gv~ll~~~~ 252 (356)
.+..|.+.-..++.++++...+=..+..++.++++.+++++++++..++|.+++++|.++....+
T Consensus 243 lf~~y~l~p~~l~~ssAt~~nLsLLTsd~~ali~~i~~f~~~~~~ly~~af~lIiiG~vvy~~~~ 307 (334)
T PF06027_consen 243 LFLFYSLVPIVLRMSSATFFNLSLLTSDFYALIIDIFFFGYKFSWLYILAFALIIIGFVVYNLAE 307 (334)
T ss_pred HHHHHHHHHHHHHhCccceeehHHHHhhHHHHHHHHHhcCccccHHHHHHHHHHHHHhheEEccC
Confidence 46666777788999999888888888999999999999999999999999999999999987755
No 54
>PRK09541 emrE multidrug efflux protein; Reviewed
Probab=98.17 E-value=7e-05 Score=58.71 Aligned_cols=70 Identities=20% Similarity=0.243 Sum_probs=62.5
Q ss_pred HHHHHHHHHHHHHHHHhhccChhHHHHH-HhhHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHhhccC
Q 018398 183 FALVDASCFQGFLAQGLQRTSAGLGSVI-IDSQPLSVAVLAALLFGESIGLVGAGGLVLGVIGLLLLEAPA 252 (356)
Q Consensus 183 ~g~~~~~~~~~~~~~al~~~~~~~a~~i-~~l~pv~~~il~~~~l~e~~~~~~~~g~~l~~~Gv~ll~~~~ 252 (356)
..++++..+++++..++++.|.+.+..+ ..+.-+.+.+++++++||++++.+++|+.+.++|++++...+
T Consensus 35 ~~~~~~~~sf~~l~~al~~ipl~iAYavw~GlG~v~~~l~g~~~f~e~~~~~~~~gi~lIi~GVi~l~l~~ 105 (110)
T PRK09541 35 GTIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLVINLLS 105 (110)
T ss_pred HHHHHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcCC
Confidence 4456667888999999999999999866 778999999999999999999999999999999999997644
No 55
>COG2510 Predicted membrane protein [Function unknown]
Probab=98.11 E-value=3.3e-05 Score=60.91 Aligned_cols=89 Identities=19% Similarity=0.250 Sum_probs=77.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhccCCChHHHHHHHHHHHHHHHHHHHHhhcCCCCCcccccCCHHHHHHHHHHHHHHHHH
Q 018398 264 GEWWMLLAAQSMAVGTVMVRWVSKYSDPVMATGWHMVIGGLPLMVISVLNHDPVYGESVKELTSSDILALLYTSIFGSAI 343 (356)
Q Consensus 264 G~llaLlaa~~~a~~~v~~r~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lgi~~s~l 343 (356)
..+++|++|+++++..++.|--.++.||...++...++..+++..+.+..++... ....+.+.|..++..| +.+++
T Consensus 4 ~~~~ALLsA~fa~L~~iF~KIGl~~vdp~~At~IRtiVi~~~l~~v~~~~g~~~~---~~~~~~k~~lflilSG-la~gl 79 (140)
T COG2510 4 AIIYALLSALFAGLTPIFAKIGLEGVDPDFATTIRTIVILIFLLIVLLVTGNWQA---GGEIGPKSWLFLILSG-LAGGL 79 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccccCccHHHHHHHHHHHHHHHHHHHhcCceec---ccccCcceehhhhHHH-HHHHH
Confidence 4689999999999999999998899999999999999999999988888766542 2346788899999888 89999
Q ss_pred HHHHHHHHhccCC
Q 018398 344 SYGVYFYSATKGK 356 (356)
Q Consensus 344 ~~~l~~~al~~~g 356 (356)
+..+|++|++++.
T Consensus 80 swl~Yf~ALk~G~ 92 (140)
T COG2510 80 SWLLYFRALKKGK 92 (140)
T ss_pred HHHHHHHHHhcCC
Confidence 9999999999873
No 56
>PF06800 Sugar_transport: Sugar transport protein; InterPro: IPR010651 This is a family of bacterial sugar transporters approximately 300 residues long. Members include glucose uptake proteins [], ribose transport proteins, and several putative and hypothetical membrane proteins probably involved in sugar transport across bacterial membranes.; GO: 0015144 carbohydrate transmembrane transporter activity, 0034219 carbohydrate transmembrane transport, 0016021 integral to membrane
Probab=98.05 E-value=0.00012 Score=66.34 Aligned_cols=129 Identities=13% Similarity=-0.029 Sum_probs=95.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhhhccCCCHHHHHHHHHHHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHHHHHHH
Q 018398 113 GMLLEWAVLVSPFFFWGTAMVAMKEVLPKAGTFFVAAFRLIPAGLLLITFASSQGRKLPSGFNAWVSIFLFALVDASCFQ 192 (356)
Q Consensus 113 ~~~~g~l~ll~aa~~~~~~~~~~k~~~~~~~p~~~~~~r~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 192 (356)
+..++++.++++.+.|..+.++.|. .+++++...+-+.+...+..+.+....++.. ..+..++-++.|++- ..++
T Consensus 135 ~~~kgi~~Ll~stigy~~Y~~~~~~--~~~~~~~~~lPqaiGm~i~a~i~~~~~~~~~--~~k~~~~nil~G~~w-~ign 209 (269)
T PF06800_consen 135 NMKKGILALLISTIGYWIYSVIPKA--FHVSGWSAFLPQAIGMLIGAFIFNLFSKKPF--FEKKSWKNILTGLIW-GIGN 209 (269)
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHh--cCCChhHhHHHHHHHHHHHHHHHhhcccccc--cccchHHhhHHHHHH-HHHH
Confidence 3456899999999999988888886 3578887777665554444444444332222 224445556667766 7888
Q ss_pred HHHHHHhhccChhHHHHHHhhHHHHHHHHHHHHhCCCCcHHHHH----HHHHHHHHHH
Q 018398 193 GFLAQGLQRTSAGLGSVIIDSQPLSVAVLAALLFGESIGLVGAG----GLVLGVIGLL 246 (356)
Q Consensus 193 ~~~~~al~~~~~~~a~~i~~l~pv~~~il~~~~l~e~~~~~~~~----g~~l~~~Gv~ 246 (356)
.+++.+.+....+.+..+..+.+++..+.+.+++||+=+++++. |+++.++|.+
T Consensus 210 l~~~is~~~~G~a~af~lSQ~~vvIStlgGI~il~E~Kt~ke~~~~~~G~~Liv~G~i 267 (269)
T PF06800_consen 210 LFYLISAQKNGVATAFTLSQLGVVISTLGGIFILKEKKTKKEMIYTLIGLILIVIGAI 267 (269)
T ss_pred HHHHHhHHhccchhhhhHHhHHHHHHHhhhheEEEecCchhhHHHHHHHHHHHHHhhh
Confidence 99999999999999999999999999999999999999988764 4444444443
No 57
>PF08449 UAA: UAA transporter family; InterPro: IPR013657 This family includes transporters with a specificity for UDP-N-acetylglucosamine []. ; GO: 0055085 transmembrane transport
Probab=98.02 E-value=0.0002 Score=66.85 Aligned_cols=135 Identities=14% Similarity=0.167 Sum_probs=109.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhcc--CCCHHHHHHHHHHHHHHHHHHHHHH--hCCCCC------CChHHHHHHHHHHHH
Q 018398 117 EWAVLVSPFFFWGTAMVAMKEVLP--KAGTFFVAAFRLIPAGLLLITFASS--QGRKLP------SGFNAWVSIFLFALV 186 (356)
Q Consensus 117 g~l~ll~aa~~~~~~~~~~k~~~~--~~~p~~~~~~r~~~~~l~~~~~~~~--~~~~~~------~~~~~~~~~~~~g~~ 186 (356)
|+++++++.++-|......+...+ +.++.+.+++....+.+..++.... .+...+ ..+..+..+++..+.
T Consensus 155 G~~ll~~sl~~~a~~~~~qe~~~~~~~~~~~~~mfy~n~~~~~~~~~~~~~l~~~~~~~~~~f~~~~p~~~~~l~~~s~~ 234 (303)
T PF08449_consen 155 GIILLLLSLLLDAFTGVYQEKLFKKYGKSPWELMFYTNLFSLPFLLILLFLLPTGEFRSAIRFISAHPSVLLYLLLFSLT 234 (303)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHhHHHHHHHHHHHHH
Confidence 899999999999999999988776 4779999999999998888877776 322111 112344445555555
Q ss_pred HHHHHHHHHHHHhhccChhHHHHHHhhHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHhhccC
Q 018398 187 DASCFQGFLAQGLQRTSAGLGSVIIDSQPLSVAVLAALLFGESIGLVGAGGLVLGVIGLLLLEAPA 252 (356)
Q Consensus 187 ~~~~~~~~~~~al~~~~~~~a~~i~~l~pv~~~il~~~~l~e~~~~~~~~g~~l~~~Gv~ll~~~~ 252 (356)
+ ..+..+.+.-.+..++...+++..+--+++.+++.+++++++++.+|+|+++++.|+.+-..+.
T Consensus 235 ~-~~g~~~i~~~~~~~~al~~t~v~t~Rk~~sillS~~~f~~~~~~~~~~G~~lv~~g~~~~~~~~ 299 (303)
T PF08449_consen 235 G-ALGQFFIFYLIKKFSALTTTIVTTLRKFLSILLSVIIFGHPLSPLQWIGIVLVFAGIFLYSYAK 299 (303)
T ss_pred H-HHHHHHHHHHHHhcCchhhhhHHHHHHHHHHHHHHHhcCCcCChHHHHHHHHhHHHHHHHHHhh
Confidence 5 5666777788999999999999999999999999999999999999999999999998876543
No 58
>PRK10650 multidrug efflux system protein MdtI; Provisional
Probab=97.99 E-value=0.00025 Score=55.34 Aligned_cols=65 Identities=18% Similarity=0.230 Sum_probs=58.4
Q ss_pred HHHHHHHHHHHHHHhhccChhHHHHH-HhhHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHhh
Q 018398 185 LVDASCFQGFLAQGLQRTSAGLGSVI-IDSQPLSVAVLAALLFGESIGLVGAGGLVLGVIGLLLLE 249 (356)
Q Consensus 185 ~~~~~~~~~~~~~al~~~~~~~a~~i-~~l~pv~~~il~~~~l~e~~~~~~~~g~~l~~~Gv~ll~ 249 (356)
++++..++++...++++.|.+.+..+ ...-.+.+.+++.+++||++++.+++|+.+.++|++++-
T Consensus 42 ~~~~~~sf~~Ls~al~~lpvgvAYAvW~GiG~v~~~~ig~~~f~e~~~~~~~~gi~lIi~GVi~lk 107 (109)
T PRK10650 42 LAAVLAAFSALSQAVKGIDLSVAYALWGGFGIAATLAAGWILFGQRLNRKGWIGLVLLLAGMVMIK 107 (109)
T ss_pred HHHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhc
Confidence 44557788999999999999999755 789999999999999999999999999999999998864
No 59
>COG2076 EmrE Membrane transporters of cations and cationic drugs [Inorganic ion transport and metabolism]
Probab=97.98 E-value=6.8e-05 Score=57.67 Aligned_cols=68 Identities=26% Similarity=0.360 Sum_probs=60.8
Q ss_pred HHHHHHHHHHHHHHHHhhccChhHHHHH-HhhHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHhhc
Q 018398 183 FALVDASCFQGFLAQGLQRTSAGLGSVI-IDSQPLSVAVLAALLFGESIGLVGAGGLVLGVIGLLLLEA 250 (356)
Q Consensus 183 ~g~~~~~~~~~~~~~al~~~~~~~a~~i-~~l~pv~~~il~~~~l~e~~~~~~~~g~~l~~~Gv~ll~~ 250 (356)
..++++..++.+..+++++.|.+.+..+ ...-.+.+.+.+++++||+++..+++|+.+.++|++.+-.
T Consensus 35 l~~v~~~~sf~~Ls~alk~ipvgvAYAiW~GiG~v~~~l~g~~~f~E~l~~~~~~gl~LiiaGvi~Lk~ 103 (106)
T COG2076 35 LTIVGYGLSFYLLSLALKTIPLGVAYAIWTGIGIVGTALVGVLLFGESLSLIKLLGLALILAGVIGLKL 103 (106)
T ss_pred HHHHHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHhcCCcCCHHHHHHHHHHHHHHHHhhh
Confidence 3455557788999999999999999754 9999999999999999999999999999999999998865
No 60
>KOG4510 consensus Permease of the drug/metabolite transporter (DMT) superfamily [General function prediction only]
Probab=97.98 E-value=3.7e-06 Score=74.42 Aligned_cols=137 Identities=15% Similarity=0.112 Sum_probs=107.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhccCCCHHHHHHHHHHHHHHHHHHHHHHhC-CCCCCChHHHHHHHHHHHHHHHHHHH
Q 018398 115 LLEWAVLVSPFFFWGTAMVAMKEVLPKAGTFFVAAFRLIPAGLLLITFASSQG-RKLPSGFNAWVSIFLFALVDASCFQG 193 (356)
Q Consensus 115 ~~g~l~ll~aa~~~~~~~~~~k~~~~~~~p~~~~~~r~~~~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~ 193 (356)
.++....+.++++-+..+++.|++.++.+.......=.+++.+.-+..+..-+ -.+|..+++|+.+..+|+.+ ++++.
T Consensus 190 ~~gt~aai~s~lf~asvyIilR~iGk~~h~~msvsyf~~i~lV~s~I~~~~ig~~~lP~cgkdr~l~~~lGvfg-figQI 268 (346)
T KOG4510|consen 190 IPGTVAAISSVLFGASVYIILRYIGKNAHAIMSVSYFSLITLVVSLIGCASIGAVQLPHCGKDRWLFVNLGVFG-FIGQI 268 (346)
T ss_pred CCchHHHHHhHhhhhhHHHHHHHhhccccEEEEehHHHHHHHHHHHHHHhhccceecCccccceEEEEEehhhh-hHHHH
Confidence 34567788888888999999999888766443333333344433333332222 34566778999999999999 88899
Q ss_pred HHHHHhhccChhHHHHHHhhHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHhhccC
Q 018398 194 FLAQGLQRTSAGLGSVIIDSQPLSVAVLAALLFGESIGLVGAGGLVLGVIGLLLLEAPA 252 (356)
Q Consensus 194 ~~~~al~~~~~~~a~~i~~l~pv~~~il~~~~l~e~~~~~~~~g~~l~~~Gv~ll~~~~ 252 (356)
+...++|.--++..+++.++..++..+...+|++|-++++.|.|+++++...+......
T Consensus 269 llTm~lQiErAGpvaim~~~dvvfAf~wqv~ff~~~Pt~ws~~Ga~~vvsS~v~~a~~k 327 (346)
T KOG4510|consen 269 LLTMGLQIERAGPVAIMTYTDVVFAFFWQVLFFGHWPTIWSWVGAVMVVSSTVWVALKK 327 (346)
T ss_pred HHHHHhhhhccCCeehhhHHHHHHHHHHHHHHhcCCChHHHhhceeeeehhHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999888877776544
No 61
>PRK10452 multidrug efflux system protein MdtJ; Provisional
Probab=97.95 E-value=8.4e-05 Score=59.06 Aligned_cols=70 Identities=26% Similarity=0.376 Sum_probs=62.7
Q ss_pred HHHHHHHHHHHHHHHHhhccChhHHHHH-HhhHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHhhccC
Q 018398 183 FALVDASCFQGFLAQGLQRTSAGLGSVI-IDSQPLSVAVLAALLFGESIGLVGAGGLVLGVIGLLLLEAPA 252 (356)
Q Consensus 183 ~g~~~~~~~~~~~~~al~~~~~~~a~~i-~~l~pv~~~il~~~~l~e~~~~~~~~g~~l~~~Gv~ll~~~~ 252 (356)
..+.+++.+++++..++++.|.+.+..+ ..+.-+.+.+++.+++||++++.+++|+.++++|++++-..+
T Consensus 35 ~~i~~~~~sf~~ls~al~~lplsiAYavw~GiG~v~~~~ig~~~f~E~~s~~~~~gi~lIi~GVi~l~l~~ 105 (120)
T PRK10452 35 LMLVMISLSYIFLSFAVKKIALGVAYALWEGIGILFITLFSVLLFDESLSLMKIAGLTTLVAGIVLIKSGT 105 (120)
T ss_pred HHHHHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhhcCC
Confidence 4555667889999999999999999866 679999999999999999999999999999999999887644
No 62
>PF04657 DUF606: Protein of unknown function, DUF606; InterPro: IPR006750 This family contains uncharacterised bacterial proteins.
Probab=97.95 E-value=0.00033 Score=57.41 Aligned_cols=129 Identities=16% Similarity=0.091 Sum_probs=97.1
Q ss_pred HHHHHHHHHHHHHHHHHHhhhccCCC-HHHHHHHHHHHHHHHHHHHHHHhCCC-CCCChHHHHHHHHHHHHHHHHHHHHH
Q 018398 118 WAVLVSPFFFWGTAMVAMKEVLPKAG-TFFVAAFRLIPAGLLLITFASSQGRK-LPSGFNAWVSIFLFALVDASCFQGFL 195 (356)
Q Consensus 118 ~l~ll~aa~~~~~~~~~~k~~~~~~~-p~~~~~~r~~~~~l~~~~~~~~~~~~-~~~~~~~~~~~~~~g~~~~~~~~~~~ 195 (356)
.++.+++.++-+....++-.+.+..+ |+..+++.+..+.+.+..+....+++ .+..++..++..+-|+++ ...-.+.
T Consensus 3 ~lla~~aG~~i~~q~~~N~~L~~~~gs~~~as~i~~~~G~i~~~i~~~~~~~~~~~~~~~~p~w~~lGG~lG-~~~V~~~ 81 (138)
T PF04657_consen 3 ILLALLAGALIALQAAFNGQLGKALGSPLVASFISFGVGFILLLIILLITGRPSLASLSSVPWWAYLGGLLG-VFFVLSN 81 (138)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHhcccccchhccCChHHhccHHHH-HHHHHHH
Confidence 45667777777777777766667676 99999999999999998888877653 222222233444467776 6666788
Q ss_pred HHHhhccChhHHHHH-HhhHHHHHHHHHHH----HhCCCCcHHHHHHHHHHHHHHHH
Q 018398 196 AQGLQRTSAGLGSVI-IDSQPLSVAVLAAL----LFGESIGLVGAGGLVLGVIGLLL 247 (356)
Q Consensus 196 ~~al~~~~~~~a~~i-~~l~pv~~~il~~~----~l~e~~~~~~~~g~~l~~~Gv~l 247 (356)
.+.....+++.+..+ ..-+-+...+++.+ .-++++++.+++|+++.++|+.+
T Consensus 82 ~~~vp~lG~~~~~~l~~~GQl~~sl~iD~fG~fg~~~~~~~~~r~lG~~l~i~Gv~L 138 (138)
T PF04657_consen 82 IILVPRLGAALTTILIVAGQLIASLLIDHFGLFGAPKRPFSLRRILGLALMIAGVIL 138 (138)
T ss_pred HHHhhhhhHHHHHHHHHHHHHHHHHHHHHccccCCCCCCCCHHHHHHHHHHHHHHhC
Confidence 889999999998865 66667777788875 35789999999999999999864
No 63
>PRK11431 multidrug efflux system protein; Provisional
Probab=97.89 E-value=0.00016 Score=56.12 Aligned_cols=66 Identities=20% Similarity=0.229 Sum_probs=59.7
Q ss_pred HHHHHHHHHHHHHHhhccChhHHHHH-HhhHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHhhc
Q 018398 185 LVDASCFQGFLAQGLQRTSAGLGSVI-IDSQPLSVAVLAALLFGESIGLVGAGGLVLGVIGLLLLEA 250 (356)
Q Consensus 185 ~~~~~~~~~~~~~al~~~~~~~a~~i-~~l~pv~~~il~~~~l~e~~~~~~~~g~~l~~~Gv~ll~~ 250 (356)
++++..++++...+++..|.+.+..+ ..+-.+.+.+++.+++||++++.+++|+.+.++|++.+..
T Consensus 36 i~~~~~sf~~Ls~al~~ip~gvaYAvW~GiG~v~~~lig~~~f~e~~~~~~~~gi~lIi~GVv~l~l 102 (105)
T PRK11431 36 VTAMIVSMALLAWAMKSLPVGTAYAVWTGIGAVGAAITGIVLLGESASPARLLSLALIVAGIIGLKL 102 (105)
T ss_pred HHHHHHHHHHHHHHHhhCCcHhHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhhhc
Confidence 55567788999999999999999755 7799999999999999999999999999999999998854
No 64
>COG5070 VRG4 Nucleotide-sugar transporter [Carbohydrate transport and metabolism / Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]
Probab=97.82 E-value=0.00057 Score=59.21 Aligned_cols=212 Identities=16% Similarity=0.153 Sum_probs=141.9
Q ss_pred HHHHHhhhccC--CC-HHHHHHHHHHHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhhccChhHH
Q 018398 131 AMVAMKEVLPK--AG-TFFVAAFRLIPAGLLLITFASSQGRKLPSGFNAWVSIFLFALVDASCFQGFLAQGLQRTSAGLG 207 (356)
Q Consensus 131 ~~~~~k~~~~~--~~-p~~~~~~r~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~al~~~~~~~a 207 (356)
+.+..|+.... .+ -+.+.+++.....+.++.+-+.+-.+.+. ++....+...++- ....+.--.+++|.+...-
T Consensus 21 mTltNKyVls~~gfnMnflll~vQSlvcvv~l~iLk~l~~~~fR~--t~aK~WfpiSfLL-v~MIyt~SKsLqyL~vpiY 97 (309)
T COG5070 21 MTLTNKYVLSNLGFNMNFLLLAVQSLVCVVGLLILKFLRLVEFRL--TKAKKWFPISFLL-VVMIYTSSKSLQYLAVPIY 97 (309)
T ss_pred HHHhhHheecCCCCchhhHHHHHHHHHHHHHHHHHHHHhHhheeh--hhhhhhcCHHHHH-HHHHHhcccceeeeeeeHH
Confidence 45667777654 33 45566666665555544443333222222 2222223333333 2222344579999999999
Q ss_pred HHHHhhHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHhhccCCCCC--CCchhhHHHHHHHHHHHHHHHHHHHHhhh
Q 018398 208 SVIIDSQPLSVAVLAALLFGESIGLVGAGGLVLGVIGLLLLEAPAFDES--NSSLWGSGEWWMLLAAQSMAVGTVMVRWV 285 (356)
Q Consensus 208 ~~i~~l~pv~~~il~~~~l~e~~~~~~~~g~~l~~~Gv~ll~~~~~~~~--~~~~~~~G~llaLlaa~~~a~~~v~~r~~ 285 (356)
+++-.+..++++....+++|.|++-.+....++.++.-+.-..++.+.. .....+.|++|+..-.+.-+.+-...|+.
T Consensus 98 TiFKNltII~iAygEvl~Fgg~vtsl~l~SFilMvlSS~va~w~D~q~~~~~~~~lN~GY~Wm~~NclssaafVL~mrkr 177 (309)
T COG5070 98 TIFKNLTIILIAYGEVLFFGGRVTSLELLSFILMVLSSVVATWGDQQASAFKAQILNPGYLWMFTNCLSSAAFVLIMRKR 177 (309)
T ss_pred HHhccceeehhHhhHHHHhcCccchhhHHHHHHHHHHHHHhccchhhHHHHHhcccCCceEEEehhhHhHHHHHHHHHHh
Confidence 9999999999999999999999999999999888888777776652111 11245679999999999999998888875
Q ss_pred cc--CCChHHHHHHHHHHHHHHHHHHHHhhcCCCCCcccccCCHHHHHHHHHHHHHHHHHHH
Q 018398 286 SK--YSDPVMATGWHMVIGGLPLMVISVLNHDPVYGESVKELTSSDILALLYTSIFGSAISY 345 (356)
Q Consensus 286 ~~--~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lgi~~s~l~~ 345 (356)
.+ ...-...++|..+.+..+++.+.++++++....--...+.....+++..|+...+++|
T Consensus 178 i~ltNf~d~dtmfYnNllslPiL~~~s~~~edws~~n~annl~~d~l~am~ISgl~svgiSy 239 (309)
T COG5070 178 IKLTNFKDFDTMFYNNLLSLPILLSFSFLFEDWSPGNLANNLSVDSLMAMFISGLCSVGISY 239 (309)
T ss_pred hcccccchhhHHHHhhhHHHHHHHHHHHHhccCCcchhhcCCChHHHHHHHHHHHHHhhhhh
Confidence 43 3345678899999999999999999887753211234455555666666655555554
No 65
>COG2962 RarD Predicted permeases [General function prediction only]
Probab=97.79 E-value=0.0018 Score=58.63 Aligned_cols=128 Identities=14% Similarity=0.127 Sum_probs=103.1
Q ss_pred HHHHHHHHHHHHHHhhhccCCCHHHHHHHHHHHHHHHHHHHHHHhCCCC---C-CChHHHHHHHHHHHHHHHHHHHHHHH
Q 018398 122 VSPFFFWGTAMVAMKEVLPKAGTFFVAAFRLIPAGLLLITFASSQGRKL---P-SGFNAWVSIFLFALVDASCFQGFLAQ 197 (356)
Q Consensus 122 l~aa~~~~~~~~~~k~~~~~~~p~~~~~~r~~~~~l~~~~~~~~~~~~~---~-~~~~~~~~~~~~g~~~~~~~~~~~~~ 197 (356)
+.-++-|+..+.+-|.. ++++.+-...-...-..+.+.+.+...... . .....+..+...|.+. ++...++..
T Consensus 154 l~la~sf~~Ygl~RK~~--~v~a~~g~~lE~l~l~p~al~yl~~l~~~~~~~~~~~~~~~~LLv~aG~vT-avpL~lf~~ 230 (293)
T COG2962 154 LALALSFGLYGLLRKKL--KVDALTGLTLETLLLLPVALIYLLFLADSGQFLQQNANSLWLLLVLAGLVT-AVPLLLFAA 230 (293)
T ss_pred HHHHHHHHHHHHHHHhc--CCchHHhHHHHHHHHhHHHHHHHHHHhcCchhhhcCCchHHHHHHHhhHHH-HHHHHHHHH
Confidence 44456677777666653 477887777777777777666666654332 1 3457778888888887 889999999
Q ss_pred HhhccChhHHHHHHhhHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHhhccC
Q 018398 198 GLQRTSAGLGSVIIDSQPLSVAVLAALLFGESIGLVGAGGLVLGVIGLLLLEAPA 252 (356)
Q Consensus 198 al~~~~~~~a~~i~~l~pv~~~il~~~~l~e~~~~~~~~g~~l~~~Gv~ll~~~~ 252 (356)
|-++++.+...++.+.+|.+..+++.+++||+++.-|.++-+.+-+|+++...++
T Consensus 231 aa~~lpls~~G~lqYi~Ptl~fllav~i~~E~~~~~~~~~F~~IW~aL~l~~~d~ 285 (293)
T COG2962 231 AAKRLPLSTLGFLQYIEPTLMFLLAVLIFGEPFDSDQLVTFAFIWLALALFSIDG 285 (293)
T ss_pred HHhcCCHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999998887643
No 66
>PF10639 UPF0546: Uncharacterised protein family UPF0546; InterPro: IPR018908 This family of proteins has no known function. Many members are annotated as potential transmembrane proteins.
Probab=97.77 E-value=8e-05 Score=58.27 Aligned_cols=110 Identities=15% Similarity=0.011 Sum_probs=78.6
Q ss_pred HHHHHHHHHHHHHHhhhccCCCHHHHHHHHHHHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 018398 122 VSPFFFWGTAMVAMKEVLPKAGTFFVAAFRLIPAGLLLITFASSQGRKLPSGFNAWVSIFLFALVDASCFQGFLAQGLQR 201 (356)
Q Consensus 122 l~aa~~~~~~~~~~k~~~~~~~p~~~~~~r~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~al~~ 201 (356)
++.+++||+..++.|....+.++..-.. |....... . .+.+. +. .+++..-.+...|++.+..
T Consensus 2 l~Vg~~WG~Tnpfik~g~~~~~~~~~~~-~~~~~~~~----L----------l~n~~-y~-ipf~lNq~GSv~f~~~L~~ 64 (113)
T PF10639_consen 2 LLVGILWGCTNPFIKRGSSGLEKVKASL-QLLQEIKF----L----------LLNPK-YI-IPFLLNQSGSVLFFLLLGS 64 (113)
T ss_pred eeehHHhcCchHHHHHHHhhcCCccchH-HHHHHHHH----H----------HHhHH-HH-HHHHHHHHHHHHHHHHHhc
Confidence 4567899999999998887654333221 32211111 0 11122 22 2343345566889999999
Q ss_pred cChhHHHHH-HhhHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHh
Q 018398 202 TSAGLGSVI-IDSQPLSVAVLAALLFGESIGLVGAGGLVLGVIGLLLL 248 (356)
Q Consensus 202 ~~~~~a~~i-~~l~pv~~~il~~~~l~e~~~~~~~~g~~l~~~Gv~ll 248 (356)
.+.+.+..+ +.+.=+++++.++++.+|..++..++|++++++|+.+.
T Consensus 65 ~dlSlavPi~Nsl~fvfT~l~g~~lge~~~~~~~~~G~~Li~~Gv~Lc 112 (113)
T PF10639_consen 65 ADLSLAVPIANSLAFVFTALTGWLLGEEVISRRTWLGMALILAGVALC 112 (113)
T ss_pred CCceeeehHHhHHHHHHHHHHHHHhcCcccchhHHHHHHHHHcCeeee
Confidence 999999977 79999999999988888888999999999999998764
No 67
>KOG2765 consensus Predicted membrane protein [Function unknown]
Probab=97.67 E-value=0.00063 Score=63.35 Aligned_cols=141 Identities=11% Similarity=0.053 Sum_probs=108.9
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHhhhccC----CCHHHHHHHHHHHHHHHHHHHHH----HhCCCCC-CChHHHHHHHH
Q 018398 112 LGMLLEWAVLVSPFFFWGTAMVAMKEVLPK----AGTFFVAAFRLIPAGLLLITFAS----SQGRKLP-SGFNAWVSIFL 182 (356)
Q Consensus 112 ~~~~~g~l~ll~aa~~~~~~~~~~k~~~~~----~~p~~~~~~r~~~~~l~~~~~~~----~~~~~~~-~~~~~~~~~~~ 182 (356)
.+...|.++.++++++||+..++.|.-.++ ++--.+..+--++..++++|..+ ....+++ +...+...+++
T Consensus 243 ~~~llG~llaL~sA~~YavY~vllk~~~~~eg~rvdi~lffGfvGLfnllllwP~l~iL~~~~~e~F~lP~~~q~~~vv~ 322 (416)
T KOG2765|consen 243 SRPLLGNLLALLSALLYAVYTVLLKRKIGDEGERVDIQLFFGFVGLFNLLLLWPPLIILDFFGEERFELPSSTQFSLVVF 322 (416)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHHHhHHHHHHHHhccCcccCCCCceeEeeeH
Confidence 455889999999999999999999876543 44222222222344444554333 2223332 23356677788
Q ss_pred HHHHHHHHHHHHHHHHhhccChhHHHHHHhhHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHhhccC
Q 018398 183 FALVDASCFQGFLAQGLQRTSAGLGSVIIDSQPLSVAVLAALLFGESIGLVGAGGLVLGVIGLLLLEAPA 252 (356)
Q Consensus 183 ~g~~~~~~~~~~~~~al~~~~~~~a~~i~~l~pv~~~il~~~~l~e~~~~~~~~g~~l~~~Gv~ll~~~~ 252 (356)
.++++.+++-+++.+|.-.+++..+++-+.++.-+.++...++-+.++++..++|.+.+++|-+++...+
T Consensus 323 ~~ligtvvSDylW~~a~~lTs~Lv~TlgmSltIPLA~~aD~l~k~~~~S~~~iiGsi~Ifv~Fv~vn~~~ 392 (416)
T KOG2765|consen 323 NNLIGTVVSDYLWAKAVLLTSPLVVTLGMSLTIPLAMFADVLIKGKHPSALYIIGSIPIFVGFVIVNISS 392 (416)
T ss_pred hhHHHHHHHHHHHHHHHHhccchhheeeeeEeeeHHHHHHHHHcCCCCCHHHHHHHHHHHHHHhheeccc
Confidence 8999999999999999999999999999999999999999988899999999999999999999998866
No 68
>TIGR00688 rarD rarD protein. This uncharacterized protein is predicted to have many membrane-spanning domains.
Probab=97.64 E-value=0.0015 Score=59.21 Aligned_cols=103 Identities=12% Similarity=0.041 Sum_probs=68.7
Q ss_pred HHHHHHHHHHHHHHHHhhhccCCCHHHHHHHHHHHHHHHHHHHHHHhCCC---CCCChHHHHHHHHHHHHHHHHHHHHHH
Q 018398 120 VLVSPFFFWGTAMVAMKEVLPKAGTFFVAAFRLIPAGLLLITFASSQGRK---LPSGFNAWVSIFLFALVDASCFQGFLA 196 (356)
Q Consensus 120 ~ll~aa~~~~~~~~~~k~~~~~~~p~~~~~~r~~~~~l~~~~~~~~~~~~---~~~~~~~~~~~~~~g~~~~~~~~~~~~ 196 (356)
..++++++|+...+..|...+. +......... ....+..+........ .....++|..++..|++ ...+|.+++
T Consensus 150 ~~l~aa~~~a~~~i~~~~~~~~-~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~-t~i~~~l~~ 226 (256)
T TIGR00688 150 EALVLAFSFTAYGLIRKALKNT-DLAGFCLETL-SLMPVAIYYLLQTDFATVQQTNPFPIWLLLVLAGLI-TGTPLLAFV 226 (256)
T ss_pred HHHHHHHHHHHHHHHHhhcCCC-CcchHHHHHH-HHHHHHHHHHHHhccCcccccCchhHHHHHHHHHHH-HHHHHHHHH
Confidence 4678899999999998876542 3322222221 1111111111111111 11122478888888877 588999999
Q ss_pred HHhhccChhHHHHHHhhHHHHHHHHHHHH
Q 018398 197 QGLQRTSAGLGSVIIDSQPLSVAVLAALL 225 (356)
Q Consensus 197 ~al~~~~~~~a~~i~~l~pv~~~il~~~~ 225 (356)
+++++.+++.++++.+++|+++.+++.++
T Consensus 227 ~a~~~~~a~~~s~~~yl~Pv~~~~~~~~~ 255 (256)
T TIGR00688 227 IAANRLPLNLLGLLQYIGPTIMMLCVSFL 255 (256)
T ss_pred HHHHcCChHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999764
No 69
>PF00893 Multi_Drug_Res: Small Multidrug Resistance protein; InterPro: IPR000390 Members of this family which have been characterised, belong to the small multidrug resistance (Smr) protein family and are integral membrane proteins. They confer resistance to a wide range of toxic compounds by removing them for the cells. The efflux is coupled to an influx of protons. An example is Escherichia coli mvrC P23895 from SWISSPROT which prevents the incorporation of methyl viologen into cells [] and is involved in ethidium bromide efflux [].; GO: 0016021 integral to membrane; PDB: 2I68_A.
Probab=97.60 E-value=0.00079 Score=51.20 Aligned_cols=58 Identities=22% Similarity=0.268 Sum_probs=36.2
Q ss_pred HHHHHHHHHHHHHHHhhccChhHHHHH-HhhHHHHHHHHHHHHhCCCCcHHHHHHHHHH
Q 018398 184 ALVDASCFQGFLAQGLQRTSAGLGSVI-IDSQPLSVAVLAALLFGESIGLVGAGGLVLG 241 (356)
Q Consensus 184 g~~~~~~~~~~~~~al~~~~~~~a~~i-~~l~pv~~~il~~~~l~e~~~~~~~~g~~l~ 241 (356)
.+.+++.+++++..++++.|.+.+..+ ..+..+.+.+++.+++||++++.+++|+.++
T Consensus 35 ~~~~~~~s~~~l~~al~~lp~~vaYavw~g~g~v~~~~~~~~~f~E~~s~~~~~gi~lI 93 (93)
T PF00893_consen 35 AVVGYGLSFYFLSLALKKLPLSVAYAVWTGLGIVGVTLVGVFFFGESLSLSKWLGIGLI 93 (93)
T ss_dssp HHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHH--------HHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHhheeeC
Confidence 444567788999999999999999755 6799999999999999999999999998764
No 70
>PF00892 EamA: EamA-like transporter family; InterPro: IPR000620 This domain is found in proteins including the Erwinia chrysanthemi PecM protein, which is involved in pectinase, cellulase and blue pigment regulation; and the Salmonella typhimurium PagO protein, the function of which is unknown. Many members of this family are classed as drug/metabolite transporters and have no known function. They are predicted to be integral membrane proteins and many of the proteins contain two copies of this domain [].; GO: 0016020 membrane
Probab=97.53 E-value=0.00016 Score=57.37 Aligned_cols=79 Identities=27% Similarity=0.470 Sum_probs=66.1
Q ss_pred HHHHHHHHHHhhhccCCChHHHHHHHHHHHHHHHHHHHHhhcCCCCCcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 018398 273 QSMAVGTVMVRWVSKYSDPVMATGWHMVIGGLPLMVISVLNHDPVYGESVKELTSSDILALLYTSIFGSAISYGVYFYSA 352 (356)
Q Consensus 273 ~~~a~~~v~~r~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lgi~~s~l~~~l~~~al 352 (356)
++||.+.+..|+..++.|+...+++..+.+.+ .++.....+... ....+...+...++++++++++++.++++++
T Consensus 1 ~~~a~~~~~~k~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~ 75 (126)
T PF00892_consen 1 FSWAIYSVFSKKLLKKISPLSITFWRFLIAGI-LLILLLILGRKP----FKNLSPRQWLWLLFLGLLGTALAYLLYFYAL 75 (126)
T ss_pred ceeeeHHHHHHHHhccCCHHHHHHHHHHHHHH-HHHHHHhhcccc----ccCCChhhhhhhhHhhccceehHHHHHHHHH
Confidence 46899999999999999999999999999998 666666654432 2456777888899999999999999999999
Q ss_pred ccCC
Q 018398 353 TKGK 356 (356)
Q Consensus 353 ~~~g 356 (356)
++.+
T Consensus 76 ~~~~ 79 (126)
T PF00892_consen 76 KYIS 79 (126)
T ss_pred Hhcc
Confidence 9864
No 71
>KOG2922 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.46 E-value=0.00065 Score=62.12 Aligned_cols=125 Identities=18% Similarity=0.202 Sum_probs=95.5
Q ss_pred cccchhHHHHHHHHHHHHHHHHHHHHHhhhccCCCHHHHHHHHHHHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHHH
Q 018398 109 VMELGMLLEWAVLVSPFFFWGTAMVAMKEVLPKAGTFFVAAFRLIPAGLLLITFASSQGRKLPSGFNAWVSIFLFALVDA 188 (356)
Q Consensus 109 ~~~~~~~~g~l~ll~aa~~~~~~~~~~k~~~~~~~p~~~~~~r~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 188 (356)
.|..+...|.++.+.+.++.|..+.+.|+...+... ...|. .+.+.+.. ++ ..++.|.+..
T Consensus 14 ~~~~d~~~G~~LaissS~~Ig~sfilkKkgl~r~~~---~~~ra-------------~~gg~~yl-~~--~~Ww~G~ltm 74 (335)
T KOG2922|consen 14 RMSSDNIIGLVLAISSSIFIGSSFILKKKGLKRAGA---SGLRA-------------GEGGYGYL-KE--PLWWAGMLTM 74 (335)
T ss_pred hhccCceeeeeehhhccEEEeeehhhhHHHHHHHhh---hcccc-------------cCCCcchh-hh--HHHHHHHHHH
Confidence 345555678889999999999999999986543221 11111 11222222 22 2344566666
Q ss_pred HHHHHHHHHHhhccChhHHHHHHhhHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHhhccC
Q 018398 189 SCFQGFLAQGLQRTSAGLGSVIIDSQPLSVAVLAALLFGESIGLVGAGGLVLGVIGLLLLEAPA 252 (356)
Q Consensus 189 ~~~~~~~~~al~~~~~~~a~~i~~l~pv~~~il~~~~l~e~~~~~~~~g~~l~~~Gv~ll~~~~ 252 (356)
..+-..-|.|+.+.|++..+.+..++.+..++++..+++||++....+|+++|++|-.++....
T Consensus 75 ~vGei~NFaAYaFAPasLVtPLGAlsvi~saila~~~L~Ekl~~~g~lGc~l~v~Gst~iV~ha 138 (335)
T KOG2922|consen 75 IVGEIANFAAYAFAPASLVTPLGALSVIISAILASFFLKEKLNLLGILGCVLCVVGSTTIVIHA 138 (335)
T ss_pred HHHhHhhHHHHhhchHhhhccchhHHHHHHHHHHHHHHHHHHHHhhhhheeEEecccEEEEEec
Confidence 7778888999999999999999999999999999999999999999999999999999988754
No 72
>COG4975 GlcU Putative glucose uptake permease [Carbohydrate transport and metabolism]
Probab=97.34 E-value=0.00015 Score=63.77 Aligned_cols=186 Identities=16% Similarity=0.105 Sum_probs=130.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhccCCCHHHHHHHHHHHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHHHHHHHHHHH
Q 018398 117 EWAVLVSPFFFWGTAMVAMKEVLPKAGTFFVAAFRLIPAGLLLITFASSQGRKLPSGFNAWVSIFLFALVDASCFQGFLA 196 (356)
Q Consensus 117 g~l~ll~aa~~~~~~~~~~k~~~~~~~p~~~~~~r~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 196 (356)
.+++.++-++.||....+.... +-+|.+.+..-.+.+.++-+.+++.. .+ ..+.+.+..-++-|++. ..++..++
T Consensus 3 ~~liaL~P~l~WGsip~v~~k~--GG~p~qQ~lGtT~GALifaiiv~~~~-~p-~~T~~~~iv~~isG~~W-s~GQ~~Qf 77 (288)
T COG4975 3 DLLIALLPALGWGSIPLVANKF--GGKPYQQTLGTTLGALIFAIIVFLFV-SP-ELTLTIFIVGFISGAFW-SFGQANQF 77 (288)
T ss_pred hHHHHHHHHHHhcccceeeeec--CCChhHhhhhccHHHHHHHHHHheee-cC-ccchhhHHHHHHhhhHh-hhhhhhhh
Confidence 4678899999999876654332 34588887777666666555555442 22 22345555555556655 77889999
Q ss_pred HHhhccChhHHHHH-HhhHHHHHHHHHHHHhCCCCcHHH----HHHHHHHHHHHHHhhccCC---CCCCCchhhHHHHHH
Q 018398 197 QGLQRTSAGLGSVI-IDSQPLSVAVLAALLFGESIGLVG----AGGLVLGVIGLLLLEAPAF---DESNSSLWGSGEWWM 268 (356)
Q Consensus 197 ~al~~~~~~~a~~i-~~l~pv~~~il~~~~l~e~~~~~~----~~g~~l~~~Gv~ll~~~~~---~~~~~~~~~~G~lla 268 (356)
.|+++.+++.+..+ +..+-+-+-+++.+.++|-.+..+ .+++++.++|+++-...+. +.++.++..+|....
T Consensus 78 ka~~~iGVSkamPiStG~QLVg~sL~gV~~f~EW~t~~~~IlG~iAliliviG~~lTs~~~~~nk~~~~~~n~kkgi~~L 157 (288)
T COG4975 78 KAIQLIGVSKAMPISTGMQLVGTSLFGVFVFHEWTTPTQIILGFIALILIVIGIYLTSKQDRNNKEEENPSNLKKGIVIL 157 (288)
T ss_pred hheeeeeeeccccccchhhHhhceeeeEEEEeccCcchhHHHHHHHHHHHHHhheEeeeeccccccccChHhhhhheeee
Confidence 99999999999877 778888899999999999888776 4567778888888877652 233445567899999
Q ss_pred HHHHHHHHHHHHHHhhhccCCChHHHHHHHHHHHHHHHHHHH
Q 018398 269 LLAAQSMAVGTVMVRWVSKYSDPVMATGWHMVIGGLPLMVIS 310 (356)
Q Consensus 269 Llaa~~~a~~~v~~r~~~~~~~~~~~~~~~~~~~~i~~~~~~ 310 (356)
+.+.+.|-.|.+..+.+. .+-+....- ..+|+++..+..
T Consensus 158 ~iSt~GYv~yvvl~~~f~--v~g~saiLP-qAiGMv~~ali~ 196 (288)
T COG4975 158 LISTLGYVGYVVLFQLFD--VDGLSAILP-QAIGMVIGALIL 196 (288)
T ss_pred eeeccceeeeEeeecccc--ccchhhhhH-HHHHHHHHHHHH
Confidence 999999999999998874 444444332 233444444433
No 73
>KOG1581 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]
Probab=97.30 E-value=0.0039 Score=56.66 Aligned_cols=139 Identities=16% Similarity=0.176 Sum_probs=111.7
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHhhhccC--CCHHHHHHHHHHHHHHHHHHHHHHhCCCCC------CChHHHHHHHH
Q 018398 111 ELGMLLEWAVLVSPFFFWGTAMVAMKEVLPK--AGTFFVAAFRLIPAGLLLITFASSQGRKLP------SGFNAWVSIFL 182 (356)
Q Consensus 111 ~~~~~~g~l~ll~aa~~~~~~~~~~k~~~~~--~~p~~~~~~r~~~~~l~~~~~~~~~~~~~~------~~~~~~~~~~~ 182 (356)
+.+...|++++....++=|......+.+.++ ++++.+++.-.+...+.-.......+...+ ..++.++-+++
T Consensus 167 ~~ns~~G~~Ll~~~L~fDgfTn~tQd~lf~~~k~s~~~mM~~vNLf~~i~~~~~li~qg~~~~av~F~~~hp~~~~Di~l 246 (327)
T KOG1581|consen 167 RENSPIGILLLFGYLLFDGFTNATQDSLFKKYKVSSLHMMFGVNLFSAILNGTYLILQGHLLPAVSFIKEHPDVAFDILL 246 (327)
T ss_pred CCCchHhHHHHHHHHHHHhhHHhHHHHHhccCCccHhHHHHHHHHHHHHHHHHhhhcCCCCchHHHHHHcChhHHHHHHH
Confidence 3455789999998888888887777766664 789998888888888887777665554321 22344555666
Q ss_pred HHHHHHHHHHHHHHHHhhccChhHHHHHHhhHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHhhc
Q 018398 183 FALVDASCFQGFLAQGLQRTSAGLGSVIIDSQPLSVAVLAALLFGESIGLVGAGGLVLGVIGLLLLEA 250 (356)
Q Consensus 183 ~g~~~~~~~~~~~~~al~~~~~~~a~~i~~l~pv~~~il~~~~l~e~~~~~~~~g~~l~~~Gv~ll~~ 250 (356)
++.++ ..++.+.++-++.-++-.-+.|+.+--++.++++.+.++.++++.||+|+.+++.|+.+=..
T Consensus 247 ~s~~g-avGQ~FI~~TI~~FGslt~t~I~ttRk~~si~lS~i~f~h~~s~~q~~g~~iVFg~i~l~~~ 313 (327)
T KOG1581|consen 247 YSTCG-AVGQLFIFYTIERFGSLTFTTIMTTRKMVSIMLSCIVFGHPLSSEQWLGVLIVFGGIFLEIL 313 (327)
T ss_pred HHHhh-hhhhheehhhHhhcccHHHHHHHHHHHHHHHHHHHHHhCCccchhhccCeeeehHHHHHHHH
Confidence 77777 77889999999999999999999999999999999999999999999999999999876544
No 74
>KOG1441 consensus Glucose-6-phosphate/phosphate and phosphoenolpyruvate/phosphate antiporter [Carbohydrate transport and metabolism; Amino acid transport and metabolism]
Probab=97.14 E-value=0.0016 Score=60.50 Aligned_cols=136 Identities=16% Similarity=0.195 Sum_probs=109.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhhcc----CCCHHHHHHHHHHHHHHHHH-HHHHHhCCCC-------CCChHHHHHHH
Q 018398 114 MLLEWAVLVSPFFFWGTAMVAMKEVLP----KAGTFFVAAFRLIPAGLLLI-TFASSQGRKL-------PSGFNAWVSIF 181 (356)
Q Consensus 114 ~~~g~l~ll~aa~~~~~~~~~~k~~~~----~~~p~~~~~~r~~~~~l~~~-~~~~~~~~~~-------~~~~~~~~~~~ 181 (356)
.+.|.+.++.+.+..+...++.|.... +++++......--++.+.++ |+....+... +.... .....
T Consensus 161 n~~G~i~a~~s~~~~al~~I~~~~ll~~~~~~~~~~~ll~y~ap~s~~~Ll~P~~~~~~~~~~~~~~~~~~~~~-~~~~~ 239 (316)
T KOG1441|consen 161 NLFGFISAMISNLAFALRNILSKKLLTSKGESLNSMNLLYYTAPISLIFLLIPFLDYVEGNKFVGFLTAPWFVT-FLILL 239 (316)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHhhhccccccCchHHHHHhhhHHHHHHhcchHhhhcccceeeeeccccchh-hHHHH
Confidence 378999999999999999999997773 48899999998889998888 8877754322 11222 33333
Q ss_pred HHHHHHHHHHHHHHHHHhhccChhHHHHHHhhHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHhhcc
Q 018398 182 LFALVDASCFQGFLAQGLQRTSAGLGSVIIDSQPLSVAVLAALLFGESIGLVGAGGLVLGVIGLLLLEAP 251 (356)
Q Consensus 182 ~~g~~~~~~~~~~~~~al~~~~~~~a~~i~~l~pv~~~il~~~~l~e~~~~~~~~g~~l~~~Gv~ll~~~ 251 (356)
+..++. ...+...|..+.++++.+-++.+..=-+++++.+++++++++++.+.+|++++++|+.+-..-
T Consensus 240 ~~sv~~-f~~Nls~f~~ig~tSalT~~V~g~~K~~~vi~~s~~iF~~pvt~~n~~G~~iai~Gv~~Y~~~ 308 (316)
T KOG1441|consen 240 LNSVLA-FLLNLSAFLVIGRTSALTYSVAGHMKRIVVIVVSWLIFGNPVTFLNALGYAIAILGVFLYSRA 308 (316)
T ss_pred HHHHHH-HHHHHHHHHHHcccCchhhhhhccceEEEEEEeEeeeecCCCchhhHHHHHHHHHHHHHHHHH
Confidence 344444 666788899999999999999998888889999999999999999999999999999887653
No 75
>TIGR00803 nst UDP-galactose transporter. NSTs generally appear to function by antiport mechanisms, exchanging a nucleotide-sugar for a nucleotide. Thus, CMP-sialic acid is exchanged for CMP; GDP-mannose is preferentially exchanged for GMP, and UDP-galactose and UDP-N-acetylglucosamine are exchanged for UMP (or possibly UDP). Other nucleotide sugars (e.g., GDP-fucose, UDP-xylose, UDP-glucose, UDP-N-acetylgalactosamine, etc.) may also be transported in exchange for various nucleotides, but their transporters have not been molecularly characterized. Each compound appears to be translocated by its own transport protein. Transport allows the compound, synthesized in the cytoplasm, to be exported to the lumen of the Golgi apparatus or the endoplasmic reticulum where it is used for the synthesis of glycoproteins and glycolipids.
Probab=96.93 E-value=0.0062 Score=54.06 Aligned_cols=59 Identities=12% Similarity=0.015 Sum_probs=54.3
Q ss_pred HHHHHHHHHHhhccChhHHHHHHhhHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHH
Q 018398 189 SCFQGFLAQGLQRTSAGLGSVIIDSQPLSVAVLAALLFGESIGLVGAGGLVLGVIGLLL 247 (356)
Q Consensus 189 ~~~~~~~~~al~~~~~~~a~~i~~l~pv~~~il~~~~l~e~~~~~~~~g~~l~~~Gv~l 247 (356)
..+..+..+.+++.+...-++...+.++++.+++.++++|+++..+++|+.+++.|+.+
T Consensus 163 a~~~~~v~~vlk~~~~~~~~~~~~~~~~~s~lls~~~f~~~ls~~~~~g~~lV~~~~~l 221 (222)
T TIGR00803 163 VGGGLCIGGVVRYADNTTKSFVTALSIILSTLASVRLFDAKISSTFYLGAILVFLATFL 221 (222)
T ss_pred HhcCceeeehhHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHeeeEe
Confidence 55567888999999999999999999999999999999999999999999999998754
No 76
>COG3238 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.86 E-value=0.052 Score=44.71 Aligned_cols=133 Identities=13% Similarity=0.077 Sum_probs=88.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhccCCC-HHHHHHHHHHHHHHHHHHHHHHhCCCCCCC--hHHHHHHHHHHHHHHHHHH
Q 018398 116 LEWAVLVSPFFFWGTAMVAMKEVLPKAG-TFFVAAFRLIPAGLLLITFASSQGRKLPSG--FNAWVSIFLFALVDASCFQ 192 (356)
Q Consensus 116 ~g~l~ll~aa~~~~~~~~~~k~~~~~~~-p~~~~~~r~~~~~l~~~~~~~~~~~~~~~~--~~~~~~~~~~g~~~~~~~~ 192 (356)
...+..+.+.++-.....++-.+.+..+ |....++.+..+.+++..+.+...+..+.. .+..++.++-|+++ +.+-
T Consensus 5 l~ll~~i~aG~~l~~Q~~iN~qL~~~~~spl~As~isf~vGt~~L~~l~l~~~~~~~~a~~~~~pwW~~~GG~lG-a~~v 83 (150)
T COG3238 5 LYLLFAILAGALLPLQAAINGRLARYLGSPLLASLISFLVGTVLLLILLLIKQGHPGLAAVASAPWWAWIGGLLG-AIFV 83 (150)
T ss_pred HHHHHHHHHhhhhhhHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHhcCCCchhhccCCchHHHHccchh-hhhh
Confidence 4456667777777777666666555555 999999999999888888877744333221 33344555566665 4443
Q ss_pred HHHHHHhhccChhHHH-HHHhhHHHHHHHHHHHHh----CCCCcHHHHHHHHHHHHHHHHhh
Q 018398 193 GFLAQGLQRTSAGLGS-VIIDSQPLSVAVLAALLF----GESIGLVGAGGLVLGVIGLLLLE 249 (356)
Q Consensus 193 ~~~~~al~~~~~~~a~-~i~~l~pv~~~il~~~~l----~e~~~~~~~~g~~l~~~Gv~ll~ 249 (356)
..-........++... ++..-+-+...+++.+=. +.+++..+++|+++.++|+.++-
T Consensus 84 t~s~~l~p~lGa~~t~~l~i~gQli~glliD~fG~~g~~~~~~~~~r~lgi~L~l~gil~~~ 145 (150)
T COG3238 84 TSSILLAPRLGAATTIALVIAGQLIMGLLIDHFGWFGVPKRPLNLPRILGILLVLAGILLAR 145 (150)
T ss_pred hhhHHhccchhHHHHHHHHHHHHHHHHHHHHhhcccCCCcCCCCHHHHHHHHHHHHHHHHhc
Confidence 4444555566555554 456667777777775533 47899999999999999955443
No 77
>PF06379 RhaT: L-rhamnose-proton symport protein (RhaT); InterPro: IPR004673 These proteins are members of the L-Rhamnose Symporter (RhaT) family. This family includes two characterised members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.; GO: 0015153 rhamnose transmembrane transporter activity, 0008645 hexose transport, 0016021 integral to membrane
Probab=96.56 E-value=0.68 Score=43.34 Aligned_cols=169 Identities=12% Similarity=0.094 Sum_probs=114.7
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHhhhccCCCHHHHHHHHHHHHHHHHHHHHHHh-C-CCC-----CCChHHHHHHHHHH
Q 018398 112 LGMLLEWAVLVSPFFFWGTAMVAMKEVLPKAGTFFVAAFRLIPAGLLLITFASSQ-G-RKL-----PSGFNAWVSIFLFA 184 (356)
Q Consensus 112 ~~~~~g~l~ll~aa~~~~~~~~~~k~~~~~~~p~~~~~~r~~~~~l~~~~~~~~~-~-~~~-----~~~~~~~~~~~~~g 184 (356)
..-..|+++-.+++++-++.++-.|..- +. .+|....-..+-..+++|+..-. . +.. ..+...+...++.|
T Consensus 3 ~~ii~Gii~h~iGg~~~~sfy~P~kkvk-~W-sWEs~Wlv~gi~swli~P~~~a~l~ip~~~~i~~~~~~~~l~~~~l~G 80 (344)
T PF06379_consen 3 SAIILGIIFHAIGGFASGSFYVPFKKVK-GW-SWESYWLVQGIFSWLIVPWLWALLAIPDFFSIYSATPASTLFWTFLFG 80 (344)
T ss_pred chHHHHHHHHHHHHHHhhhhccchhhcC-Cc-cHHHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHhCChhHHHHHHHHH
Confidence 3446788889999999999988888753 23 33333333334444444444322 1 111 12335666677788
Q ss_pred HHHHHHHHHHHHHHhhccChhHHH-HHHhhHHHHHHHHHHHHhC-------CCCcHHHHHHHHHHHHHHHHhhccCC---
Q 018398 185 LVDASCFQGFLAQGLQRTSAGLGS-VIIDSQPLSVAVLAALLFG-------ESIGLVGAGGLVLGVIGLLLLEAPAF--- 253 (356)
Q Consensus 185 ~~~~~~~~~~~~~al~~~~~~~a~-~i~~l~pv~~~il~~~~l~-------e~~~~~~~~g~~l~~~Gv~ll~~~~~--- 253 (356)
++- .++-..|=.+++|+..+... +...+.-++-.++-.++.+ ++-....++|++++++|+++....+.
T Consensus 81 ~lW-GIGgltfGl~mryLGvSLG~sI~lGl~~~~GTlippi~~g~~~~l~~~~~g~~vL~Gv~v~LiGIai~g~AG~~Ke 159 (344)
T PF06379_consen 81 VLW-GIGGLTFGLAMRYLGVSLGQSIALGLCAVFGTLIPPIFQGTFDELLATPSGQIVLLGVAVCLIGIAICGKAGSMKE 159 (344)
T ss_pred HHH-hcchhhHhHHHHHHhHHHHHHHHHHHHHHHhhchHHHHcCcccccccCCCchhhhhHHHHHHHHHHHHhHHHHhhh
Confidence 887 66668889999999998886 4477777777777666644 23355779999999999999987651
Q ss_pred ----CCCCCchhhHHHHHHHHHHHHHHHHHHHHh
Q 018398 254 ----DESNSSLWGSGEWWMLLAAQSMAVGTVMVR 283 (356)
Q Consensus 254 ----~~~~~~~~~~G~llaLlaa~~~a~~~v~~r 283 (356)
+.....+..+|.++++++++.-++.++-..
T Consensus 160 ~~~~~~~~efn~~kGl~iAv~sGv~Sa~fn~g~~ 193 (344)
T PF06379_consen 160 KELGEEAKEFNFKKGLIIAVLSGVMSACFNFGLD 193 (344)
T ss_pred hhhccchhhhhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 111223456999999999999888888754
No 78
>PRK13499 rhamnose-proton symporter; Provisional
Probab=96.53 E-value=0.16 Score=48.00 Aligned_cols=138 Identities=13% Similarity=0.037 Sum_probs=84.1
Q ss_pred chhHHHHHHHHHHHHHHHHHH-------HHHhhhc-cCCCHHHHHHHHHH---HHHHH-HHHHHHH---hCCCC-----C
Q 018398 112 LGMLLEWAVLVSPFFFWGTAM-------VAMKEVL-PKAGTFFVAAFRLI---PAGLL-LITFASS---QGRKL-----P 171 (356)
Q Consensus 112 ~~~~~g~l~ll~aa~~~~~~~-------~~~k~~~-~~~~p~~~~~~r~~---~~~l~-~~~~~~~---~~~~~-----~ 171 (356)
.+..+|++.++++.+.+++.. +..+... .+.++.....-.++ ++.++ -+.++.+ ++++. +
T Consensus 170 ~~~~KGi~ialisgi~~~~f~~~~~~~~~~~~~a~~~g~~~~~~~lp~~~~~~~G~~~~n~~~~~~~~~k~~~~~~~~~~ 249 (345)
T PRK13499 170 FNLKKGLILAVMSGIFSACFSFAMDAGKPMHEAAAALGVDPLYAALPSYVVIMGGGAITNLGFCFIRLAKNKDLSLKADF 249 (345)
T ss_pred cchHhHHHHHHHHHHHHHHHHHHHhhccchhhhhhhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCcccchhc
Confidence 344679999999999999887 4444321 24565555555554 33333 3333332 22221 1
Q ss_pred -CC----hHHHHHHHHHHHHHHHHHHHHHHHHhhccChhHHHH---HH-hhHHHHHHHHHHHHhCCCCc------HHHHH
Q 018398 172 -SG----FNAWVSIFLFALVDASCFQGFLAQGLQRTSAGLGSV---II-DSQPLSVAVLAALLFGESIG------LVGAG 236 (356)
Q Consensus 172 -~~----~~~~~~~~~~g~~~~~~~~~~~~~al~~~~~~~a~~---i~-~l~pv~~~il~~~~l~e~~~------~~~~~ 236 (356)
.+ .+.....++.|++- ..++.++.++-...+...+.+ +. .+..++..+.+. ++||+=+ +.-++
T Consensus 250 ~~~~~~~~~n~l~~~l~G~~W-~~~~~~y~~~~~~~g~~~~~~sw~l~m~~~ViistlwGi-~lkE~K~a~~k~~~~l~~ 327 (345)
T PRK13499 250 SLAKPLLITNVLLSALAGVMW-YLQFFFYAMGHSKLGAQYDFVSWMLHMSFYVLCGNLWGL-VLKEWKGASRRPVRVLSL 327 (345)
T ss_pred cccchhHHHHHHHHHHHHHHH-HHHHHHHHHHHHHcCCccchHHHHHhccHHHHHHHHhhh-hhhhccCCCccchhHHHH
Confidence 12 12222224445544 666778888888776655554 65 666677777775 6999877 56688
Q ss_pred HHHHHHHHHHHhhcc
Q 018398 237 GLVLGVIGLLLLEAP 251 (356)
Q Consensus 237 g~~l~~~Gv~ll~~~ 251 (356)
|+++.++|..++...
T Consensus 328 G~vliI~g~~lig~~ 342 (345)
T PRK13499 328 GCVVIILAANIVGLG 342 (345)
T ss_pred HHHHHHHHHHHHhhc
Confidence 999999998888753
No 79
>PF07857 DUF1632: CEO family (DUF1632); InterPro: IPR012435 These sequences are found in hypothetical eukaryotic proteins of unknown function. The region concerned is approximately 280 residues long.
Probab=96.50 E-value=0.059 Score=48.67 Aligned_cols=166 Identities=14% Similarity=0.119 Sum_probs=107.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhccCCCHHHHHHHHHHHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHHHHHHHHHHH
Q 018398 117 EWAVLVSPFFFWGTAMVAMKEVLPKAGTFFVAAFRLIPAGLLLITFASSQGRKLPSGFNAWVSIFLFALVDASCFQGFLA 196 (356)
Q Consensus 117 g~l~ll~aa~~~~~~~~~~k~~~~~~~p~~~~~~r~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 196 (356)
|++..+++.+++|++++-.|.. +.-|++.+-++......+.-+.+...++.+ +-..+.++-|.+- +.++.+..
T Consensus 1 G~~a~~va~~~fGs~~vPvK~~-~~gDg~~fQw~~~~~i~~~g~~v~~~~~~p-----~f~p~amlgG~lW-~~gN~~~v 73 (254)
T PF07857_consen 1 GYIACIVAVLFFGSNFVPVKKF-DTGDGFFFQWVMCSGIFLVGLVVNLILGFP-----PFYPWAMLGGALW-ATGNILVV 73 (254)
T ss_pred CchhHHHHHHHhcccceeeEec-cCCCcHHHHHHHHHHHHHHHHHHHHhcCCC-----cceeHHHhhhhhh-hcCceeeh
Confidence 4677899999999999999964 446777776666665555555555443321 1122233344444 77889999
Q ss_pred HHhhccChhHHHHHHhhHHH-HHHHHHHH-HhCCC-----CcHHHHHHHHHHHHHHHHhhccCC----------------
Q 018398 197 QGLQRTSAGLGSVIIDSQPL-SVAVLAAL-LFGES-----IGLVGAGGLVLGVIGLLLLEAPAF---------------- 253 (356)
Q Consensus 197 ~al~~~~~~~a~~i~~l~pv-~~~il~~~-~l~e~-----~~~~~~~g~~l~~~Gv~ll~~~~~---------------- 253 (356)
-.++..+.+.+.++-...-+ ..-..+.+ +++++ -....++|++++++|..+...-..
T Consensus 74 pii~~iGLglg~liW~s~n~l~Gw~~grfGlFg~~~~~~~~~~Ln~~G~~l~~~~~~~f~fik~~~~~~~~~~~~~~~~~ 153 (254)
T PF07857_consen 74 PIIKTIGLGLGMLIWGSVNCLTGWASGRFGLFGLDPQVPSSPWLNYIGVALVLVSGIIFSFIKSEEKEPKKSSEETPLSI 153 (254)
T ss_pred hHhhhhhhHHHHHHHHHHHHHHHHHHhhceeccccccccchhHHHHHHHHHHHHHHHheeeecCCCCCcccccccccccc
Confidence 99999999999988555433 33333332 33332 356779999999999887765220
Q ss_pred C------CC-----CC---------chhhHHHHHHHHHHHHHHHHHHHHhhhccCC
Q 018398 254 D------ES-----NS---------SLWGSGEWWMLLAAQSMAVGTVMVRWVSKYS 289 (356)
Q Consensus 254 ~------~~-----~~---------~~~~~G~llaLlaa~~~a~~~v~~r~~~~~~ 289 (356)
+ .. +. .....|..+++++++.|+...+=..++.++.
T Consensus 154 ~~~~~~~~~~~~~~~~S~vd~l~~~~~RivG~~LAv~aGvlyGs~fvPv~Yi~~~~ 209 (254)
T PF07857_consen 154 EDVIEIEDDSENSEDSSWVDELSPRKKRIVGIILAVFAGVLYGSNFVPVIYIQDHP 209 (254)
T ss_pred ccccccccccccccccccccccccccchhHhHHHHHHHHHHHhcccchHHHHHhCc
Confidence 0 00 00 0245788888888888888877766665443
No 80
>KOG1580 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]
Probab=96.46 E-value=0.017 Score=50.64 Aligned_cols=137 Identities=12% Similarity=0.022 Sum_probs=95.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhccC--CCHHHHHHHHHHHHHHHHHHHHHHhCCCC------CCChHHHHHHHHHHHH
Q 018398 115 LLEWAVLVSPFFFWGTAMVAMKEVLPK--AGTFFVAAFRLIPAGLLLITFASSQGRKL------PSGFNAWVSIFLFALV 186 (356)
Q Consensus 115 ~~g~l~ll~aa~~~~~~~~~~k~~~~~--~~p~~~~~~r~~~~~l~~~~~~~~~~~~~------~~~~~~~~~~~~~g~~ 186 (356)
..|-++++++...=|.........-.+ -+..++++.-.+-..+.+-.-.+..+.-+ ..-...++.+.++++.
T Consensus 171 g~GElLL~lSL~mDGlTg~~Qdrira~yq~~g~~MM~~~NlwStL~Lg~g~lfTGElweF~yF~~RhP~~~~~l~l~ai~ 250 (337)
T KOG1580|consen 171 GFGELLLILSLAMDGLTGSIQDRIRASYQRTGTSMMFYTNLWSTLYLGAGLLFTGELWEFFYFVQRHPYVFWDLTLLAIA 250 (337)
T ss_pred chHHHHHHHHHHhcccchhHHHHHHHhhccCchhhHHHHHHHHHHHhhhhheehhhHHHHHHHHHhccHHHHHHHHHHHH
Confidence 456777888887777777665544332 22223333333333333332222222111 0112556667777777
Q ss_pred HHHHHHHHHHHHhhccChhHHHHHHhhHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHhhccC
Q 018398 187 DASCFQGFLAQGLQRTSAGLGSVIIDSQPLSVAVLAALLFGESIGLVGAGGLVLGVIGLLLLEAPA 252 (356)
Q Consensus 187 ~~~~~~~~~~~al~~~~~~~a~~i~~l~pv~~~il~~~~l~e~~~~~~~~g~~l~~~Gv~ll~~~~ 252 (356)
+ ++++.|.|.-+.+-++...+++..+--.|+++.+.++++.+++.+||+|.++++.|...=...+
T Consensus 251 s-~LGQ~fIF~tv~~FgPLtCSivTTTRKfFTil~SVllf~npls~rQwlgtvlVF~aL~~D~~~G 315 (337)
T KOG1580|consen 251 S-CLGQWFIFKTVEEFGPLTCSIVTTTRKFFTILISVLLFNNPLSGRQWLGTVLVFSALTADVVDG 315 (337)
T ss_pred H-HhhhHHHHHHHHHhCCeeEEEEeehHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHhhhHhhcC
Confidence 7 8888999999999999999999999999999999999999999999999999999988766644
No 81
>PF03151 TPT: Triose-phosphate Transporter family; InterPro: IPR004853 This family consists entirely of aligned regions from Drosophila melanogaster proteins. O49724 from SWISSPROT contains three repeats of this region. In other proteins, the aligned region is located towards the C terminus. The function of the aligned region is unknown.
Probab=95.98 E-value=0.07 Score=44.02 Aligned_cols=54 Identities=19% Similarity=0.191 Sum_probs=47.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhcc-------CCChHHHHHHHHHHHHHHHHHHHHhhcCCC
Q 018398 264 GEWWMLLAAQSMAVGTVMVRWVSK-------YSDPVMATGWHMVIGGLPLMVISVLNHDPV 317 (356)
Q Consensus 264 G~llaLlaa~~~a~~~v~~r~~~~-------~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 317 (356)
|.++++++.++.+++.++.|+..+ +.++.+...+....+.+++++.+++.|++.
T Consensus 1 G~~~~l~s~~~~al~~v~~~~~~~~~~~~~~~~~~~~l~~~~~~~s~~~l~~~~~~~e~~~ 61 (153)
T PF03151_consen 1 GFILALASSLFSALRNVLIKKLLKKVSSNSKKLNPLNLLYYNSPISFIILLPLAFLLEGPQ 61 (153)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 678999999999999999987543 468999999999999999999999988765
No 82
>KOG1582 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]
Probab=95.61 E-value=0.2 Score=45.08 Aligned_cols=168 Identities=13% Similarity=0.062 Sum_probs=102.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhhccChhHHHHHHhhHHHHHHHHHHH
Q 018398 145 FFVAAFRLIPAGLLLITFASSQGRKLPSGFNAWVSIFLFALVDASCFQGFLAQGLQRTSAGLGSVIIDSQPLSVAVLAAL 224 (356)
Q Consensus 145 ~~~~~~r~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~al~~~~~~~a~~i~~l~pv~~~il~~~ 224 (356)
+.++++++.+-..+.+..+...+. ++....|+.+..++++. .+.+.+..-++.|++=-.-.++-.+--+=+++.+.+
T Consensus 76 WylTlvQf~~Ysg~glie~~~~~~--k~r~iP~rtY~~la~~t-~gtmGLsn~SlgYLNYPtQviFKccKliPVmiggif 152 (367)
T KOG1582|consen 76 WYLTLVQFLVYSGFGLIELQLIQT--KRRVIPWRTYVILAFLT-VGTMGLSNGSLGYLNYPTQVIFKCCKLIPVMIGGIF 152 (367)
T ss_pred hHHHHHHHHHHHhhhheEEEeecc--cceecchhHhhhhHhhh-hhccccCcCccccccCcHHHHHHhhhhhhhhheeee
Confidence 456666665543333322211111 11223455555555554 444455555566655444445555555556678888
Q ss_pred HhCCCCcHHHHHHHHHHHHHHHHhhccCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHhhhccC--CChHHHHHHHHHHH
Q 018398 225 LFGESIGLVGAGGLVLGVIGLLLLEAPAFDESNSSLWGSGEWWMLLAAQSMAVGTVMVRWVSKY--SDPVMATGWHMVIG 302 (356)
Q Consensus 225 ~l~e~~~~~~~~g~~l~~~Gv~ll~~~~~~~~~~~~~~~G~llaLlaa~~~a~~~v~~r~~~~~--~~~~~~~~~~~~~~ 302 (356)
+-|.|.++.+.++..+..+|+++....+..-++. ....|..+.=.+-++=|.-.-+.++..+. .+..+++++...+|
T Consensus 153 IqGkRY~v~d~~aA~lm~lGli~FTLADs~~sPN-F~~~Gv~mIsgALl~DA~iGNvQEk~m~~~~~ss~EmvfySy~iG 231 (367)
T KOG1582|consen 153 IQGKRYGVHDYIAAMLMSLGLIWFTLADSQTSPN-FNLIGVMMISGALLADAVIGNVQEKAMKMNPASSSEMVFYSYGIG 231 (367)
T ss_pred eccccccHHHHHHHHHHHHHHHhhhhcccccCCC-cceeeHHHHHHHHHHHHHhhHHHHHHHhhCCCCcceEEEeeeccc
Confidence 8899999999999999999999999877433322 22357665555555555444444444332 35677888889999
Q ss_pred HHHHHHHHHhhcCC
Q 018398 303 GLPLMVISVLNHDP 316 (356)
Q Consensus 303 ~i~~~~~~~~~~~~ 316 (356)
.+..+..+...++.
T Consensus 232 ~vflf~~mvlTge~ 245 (367)
T KOG1582|consen 232 FVFLFAPMVLTGEL 245 (367)
T ss_pred HHHHHHHHHhcccc
Confidence 99988888887654
No 83
>KOG1444 consensus Nucleotide-sugar transporter VRG4/SQV-7 [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=95.06 E-value=0.24 Score=45.68 Aligned_cols=136 Identities=13% Similarity=0.074 Sum_probs=104.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhcc--CCCHHHHHHHHHHHHHHHHHHHHHHhCCCC--------CCChHHHHHHHHHH
Q 018398 115 LLEWAVLVSPFFFWGTAMVAMKEVLP--KAGTFFVAAFRLIPAGLLLITFASSQGRKL--------PSGFNAWVSIFLFA 184 (356)
Q Consensus 115 ~~g~l~ll~aa~~~~~~~~~~k~~~~--~~~p~~~~~~r~~~~~l~~~~~~~~~~~~~--------~~~~~~~~~~~~~g 184 (356)
..|+.+++...+.-+...+..|...+ +.+-+.+.+...++..+.+....+..+... ......+..+.+-+
T Consensus 156 ~~gY~w~~~n~~~~a~~~v~~kk~vd~~~l~~~~lv~yNnl~~L~~l~~~~~~~ge~~~l~~~~~~~~~~~~~~~~~lSc 235 (314)
T KOG1444|consen 156 LRGYSWALANCLTTAAFVVYVKKSVDSANLNKFGLVFYNNLLSLPPLLILSFITGELDALSLNFDNWSDSSVLVVMLLSC 235 (314)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHhhccccccceeEEeehhHHHHHHHHHHHHHhcchHHHHhhcccccchhHHHHHHHHH
Confidence 34788888888888888888888776 366888899999888888887776554311 11124456667777
Q ss_pred HHHHHHHHHHHHHHhhccChhHHHHHHhhHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHhhcc
Q 018398 185 LVDASCFQGFLAQGLQRTSAGLGSVIIDSQPLSVAVLAALLFGESIGLVGAGGLVLGVIGLLLLEAP 251 (356)
Q Consensus 185 ~~~~~~~~~~~~~al~~~~~~~a~~i~~l~pv~~~il~~~~l~e~~~~~~~~g~~l~~~Gv~ll~~~ 251 (356)
+++.++ .++.++..+..++..-++.....-..+.+...++.+++.++...+|+.++++|-++-...
T Consensus 236 v~gf~i-sy~s~~ct~~~SAtT~tivG~~n~l~t~l~~ll~~d~~~~~~n~~gll~~~~ggv~Y~~~ 301 (314)
T KOG1444|consen 236 VMGFGI-SYTSFLCTRVNSATTTTIVGAKNKLLTYLGGLLFGDKPFTFLNVIGLLVGFFGGVLYSYA 301 (314)
T ss_pred HHHHHH-HHHHHHHHhhccccceeehhhhhhHHHHHHHHhcCCceechhhhHHHHHHhhhhhHHhhh
Confidence 777555 477889999999998888887777777888878889999999999999999997766543
No 84
>PF04142 Nuc_sug_transp: Nucleotide-sugar transporter; InterPro: IPR007271 This family of membrane proteins transport nucleotide sugars from the cytoplasm into golgi vesicles. P78382 from SWISSPROT transports CMP-sialic acid, P78381 from SWISSPROT transports UDP-galactose and Q9Y2D2 from SWISSPROT transports UDP-GlcNAc. This family has some but not complete overlap with the UDP-galactose transporter family IPR004689 from INTERPRO.; GO: 0005351 sugar:hydrogen symporter activity, 0008643 carbohydrate transport, 0000139 Golgi membrane, 0016021 integral to membrane
Probab=94.59 E-value=1.1 Score=40.38 Aligned_cols=128 Identities=17% Similarity=0.095 Sum_probs=84.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhhhccC--CCHHHHHHHHHHHHHHHHHHHHHHhCC-CCC-C-ChHHHHHHHHHHHHH
Q 018398 113 GMLLEWAVLVSPFFFWGTAMVAMKEVLPK--AGTFFVAAFRLIPAGLLLITFASSQGR-KLP-S-GFNAWVSIFLFALVD 187 (356)
Q Consensus 113 ~~~~g~l~ll~aa~~~~~~~~~~k~~~~~--~~p~~~~~~r~~~~~l~~~~~~~~~~~-~~~-~-~~~~~~~~~~~g~~~ 187 (356)
....|+++.++++++-|...+...+..++ .+.+.....=+..+.++.++.....+. ... . ..+.+-...+.-++.
T Consensus 111 ~~~~G~~~vl~~~~~S~~agVy~E~~lK~~~~s~~~~N~qL~~~gi~~~~~~~~~~~~~~~~~~g~f~G~~~~~~~~i~~ 190 (244)
T PF04142_consen 111 NPLLGLLAVLAAAFLSGFAGVYFEKLLKRSNVSLWIQNMQLYLFGILFNLLALLLSDGSAISESGFFHGYSWWVWIVIFL 190 (244)
T ss_pred hhHhHHHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHhcccccccccCCchhhcchHHHHHHHH
Confidence 44678999999999999999998777765 344444444444555554444433322 111 0 011111112222223
Q ss_pred HHHHHHHHHHHhhccChhHHHHHHhhHHHHHHHHHHHHhCCCCcHHHHHHHHH
Q 018398 188 ASCFQGFLAQGLQRTSAGLGSVIIDSQPLSVAVLAALLFGESIGLVGAGGLVL 240 (356)
Q Consensus 188 ~~~~~~~~~~al~~~~~~~a~~i~~l~pv~~~il~~~~l~e~~~~~~~~g~~l 240 (356)
.+.+=.+...-+||.+.-.=......+.+++.+++.++++.+++....+|..+
T Consensus 191 ~a~gGllva~v~KyadnI~K~fa~a~siv~t~~~s~~lf~~~~s~~f~lg~~~ 243 (244)
T PF04142_consen 191 QAIGGLLVAFVLKYADNIVKGFATAVSIVLTAVLSVLLFGFPPSLSFLLGAAL 243 (244)
T ss_pred HHHhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHhhheec
Confidence 34343666778999998888889999999999999999999999999888754
No 85
>PRK02237 hypothetical protein; Provisional
Probab=93.83 E-value=1 Score=34.71 Aligned_cols=49 Identities=8% Similarity=-0.062 Sum_probs=39.9
Q ss_pred cChhHHH-HHHhhHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHhhc
Q 018398 202 TSAGLGS-VIIDSQPLSVAVLAALLFGESIGLVGAGGLVLGVIGLLLLEA 250 (356)
Q Consensus 202 ~~~~~a~-~i~~l~pv~~~il~~~~l~e~~~~~~~~g~~l~~~Gv~ll~~ 250 (356)
...+.+. .-.....+...+..+.+-|+|+++.+++|..+|++|+.++..
T Consensus 56 ~~~GRvYAAYGGvyI~~Sl~W~w~vdg~~Pd~~D~iGa~v~L~G~~iI~~ 105 (109)
T PRK02237 56 AAFGRVYAAYGGVYVAGSLLWLWVVDGVRPDRWDWIGAAICLVGMAVIMY 105 (109)
T ss_pred hhhhhHHHHhhhHHHHHHHHHHHHhcCcCCChhHHHhHHHHHHhHHHhee
Confidence 3345553 446677788889999999999999999999999999988864
No 86
>COG5070 VRG4 Nucleotide-sugar transporter [Carbohydrate transport and metabolism / Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]
Probab=93.70 E-value=0.58 Score=41.01 Aligned_cols=132 Identities=12% Similarity=0.160 Sum_probs=95.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhcc--CCCHHHHHHHHHHHHHHHHHHHHHHhCCCCCC------ChHHHHHHHHHHHHHH
Q 018398 117 EWAVLVSPFFFWGTAMVAMKEVLP--KAGTFFVAAFRLIPAGLLLITFASSQGRKLPS------GFNAWVSIFLFALVDA 188 (356)
Q Consensus 117 g~l~ll~aa~~~~~~~~~~k~~~~--~~~p~~~~~~r~~~~~l~~~~~~~~~~~~~~~------~~~~~~~~~~~g~~~~ 188 (356)
|++.+..-.+--+..-..+|...+ +..-+..+++..+++..+++.+.+..+.+.+. +.....+.++.|++..
T Consensus 156 GY~Wm~~NclssaafVL~mrkri~ltNf~d~dtmfYnNllslPiL~~~s~~~edws~~n~annl~~d~l~am~ISgl~sv 235 (309)
T COG5070 156 GYLWMFTNCLSSAAFVLIMRKRIKLTNFKDFDTMFYNNLLSLPILLSFSFLFEDWSPGNLANNLSVDSLMAMFISGLCSV 235 (309)
T ss_pred ceEEEehhhHhHHHHHHHHHHhhcccccchhhHHHHhhhHHHHHHHHHHHHhccCCcchhhcCCChHHHHHHHHHHHHHh
Confidence 454444444444444445555443 35577888999999999888887776654332 2234556777777775
Q ss_pred HHHHHHHHHHhhccChhHHHHHHhhHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHhh
Q 018398 189 SCFQGFLAQGLQRTSAGLGSVIIDSQPLSVAVLAALLFGESIGLVGAGGLVLGVIGLLLLE 249 (356)
Q Consensus 189 ~~~~~~~~~al~~~~~~~a~~i~~l~pv~~~il~~~~l~e~~~~~~~~g~~l~~~Gv~ll~ 249 (356)
+.. ++..+.++-++.+.-+++..+.-.-.++-+.++++|+.+...+..++++++..++-.
T Consensus 236 giS-y~saWcvrVtSSTtySMvGALNKlp~alaGlvffdap~nf~si~sillGflsg~iYa 295 (309)
T COG5070 236 GIS-YCSAWCVRVTSSTTYSMVGALNKLPIALAGLVFFDAPVNFLSIFSILLGFLSGAIYA 295 (309)
T ss_pred hhh-hccceeEeehhhhHHHHHHHhhhChHHHhhhhhcCCchhHHHHHHHHHHHHHHHHHH
Confidence 554 677899999999999999999999999999999999999999988888776554443
No 87
>COG4975 GlcU Putative glucose uptake permease [Carbohydrate transport and metabolism]
Probab=93.35 E-value=0.011 Score=52.22 Aligned_cols=128 Identities=13% Similarity=0.057 Sum_probs=83.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhh-ccCCCHHHHHHHHHHHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHHHHHHHH
Q 018398 115 LLEWAVLVSPFFFWGTAMVAMKEV-LPKAGTFFVAAFRLIPAGLLLITFASSQGRKLPSGFNAWVSIFLFALVDASCFQG 193 (356)
Q Consensus 115 ~~g~l~ll~aa~~~~~~~~~~k~~-~~~~~p~~~~~~r~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 193 (356)
.+|+..++.+.+-|-..-++.+.. .+..+...-.++-++++++.+- +.+.. +...+..+.-++.|+.- +.++.
T Consensus 151 kkgi~~L~iSt~GYv~yvvl~~~f~v~g~saiLPqAiGMv~~ali~~----~~~~~-~~~~K~t~~nii~G~~W-a~GNl 224 (288)
T COG4975 151 KKGIVILLISTLGYVGYVVLFQLFDVDGLSAILPQAIGMVIGALILG----FFKME-KRFNKYTWLNIIPGLIW-AIGNL 224 (288)
T ss_pred hhheeeeeeeccceeeeEeeeccccccchhhhhHHHHHHHHHHHHHh----hcccc-cchHHHHHHHHhhHHHH-HhhHH
Confidence 456666666766655444444422 2334444444444444444332 22222 22335556667778877 78889
Q ss_pred HHHHHhhccChhHHHHHHhhHHHHHHHHHHHHhCCCCcHHHHH----HHHHHHHHHHHh
Q 018398 194 FLAQGLQRTSAGLGSVIIDSQPLSVAVLAALLFGESIGLVGAG----GLVLGVIGLLLL 248 (356)
Q Consensus 194 ~~~~al~~~~~~~a~~i~~l~pv~~~il~~~~l~e~~~~~~~~----g~~l~~~Gv~ll 248 (356)
++++|-+....+.+-.+..+..++..+-+.+++|||-+++++. |+++.++|..++
T Consensus 225 ~ml~a~~~~GvAt~FSlSQlgViisTiGGIl~L~ekKtkkEm~~v~iGiilivvgai~l 283 (288)
T COG4975 225 FMLLAAQKVGVATSFSLSQLGVIISTIGGILFLGEKKTKKEMVYVIIGIILIVVGAILL 283 (288)
T ss_pred HHHHhhhhhceeeeeeHhhheeeeeecceEEEEeccCchhhhhhhhhhHHHHHHHhhhh
Confidence 9999999999998888999999999999999999999999965 455555555444
No 88
>KOG1443 consensus Predicted integral membrane protein [Function unknown]
Probab=93.29 E-value=1.8 Score=39.85 Aligned_cols=133 Identities=14% Similarity=0.033 Sum_probs=82.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhccCC-----CHHHHHHHHHHHHHHHHHHHHHHhCCCCC---------C----ChHH
Q 018398 115 LLEWAVLVSPFFFWGTAMVAMKEVLPKA-----GTFFVAAFRLIPAGLLLITFASSQGRKLP---------S----GFNA 176 (356)
Q Consensus 115 ~~g~l~ll~aa~~~~~~~~~~k~~~~~~-----~p~~~~~~r~~~~~l~~~~~~~~~~~~~~---------~----~~~~ 176 (356)
..|..+...+.++-|.-+...+.+..+- +|....+--.-...+.++|..+..++..+ . ..+.
T Consensus 163 i~Gf~lv~~aS~~sGlRW~~tQ~ll~~~~~~~~~P~~ti~~l~p~M~~~Ll~~~l~fEG~~~~~~s~~f~~~d~~~~~rv 242 (349)
T KOG1443|consen 163 IEGFFLVLAASLLSGLRWAFTQMLLRNQPSAKRNPIDTIFHLQPWMSIGLLPLSLLFEGLHLITSSSIFRFQDTGLILRV 242 (349)
T ss_pred ehhHHHHHHHHHhhhhhHHHHHHHHhcCccccCCCeeeHHHhhhHHHHHHHHHHHHHcccccchhhhHHHhcCccHHHHH
Confidence 5678888888888888887777666532 24443332222233333333333332211 1 1122
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccChhHHHHHHhhHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHh
Q 018398 177 WVSIFLFALVDASCFQGFLAQGLQRTSAGLGSVIIDSQPLSVAVLAALLFGESIGLVGAGGLVLGVIGLLLL 248 (356)
Q Consensus 177 ~~~~~~~g~~~~~~~~~~~~~al~~~~~~~a~~i~~l~pv~~~il~~~~l~e~~~~~~~~g~~l~~~Gv~ll 248 (356)
...+.+.|.... +--.+.+.=+..++.-..++..-.-=+.+.+++.++++++++...|+|..++..|+.+=
T Consensus 243 ~g~i~l~g~laF-~l~~sEflLl~~Ts~ltlSIaGI~Kel~tl~la~ii~~d~ls~lN~~Gl~i~~agi~~~ 313 (349)
T KOG1443|consen 243 IGLISLGGLLAF-LLEFSEFLLLSRTSSLTLSIAGIVKEVCTLLLAIIILKDQLSLLNWLGLAICLAGILLH 313 (349)
T ss_pred HHHHHHHHHHHH-HHHHHHHheeeeccceeeeHHHHHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHHHHh
Confidence 333333333332 22234455566777777777776777889999999999999999999999999999887
No 89
>KOG4831 consensus Unnamed protein [Function unknown]
Probab=93.06 E-value=1 Score=34.51 Aligned_cols=112 Identities=16% Similarity=0.118 Sum_probs=75.7
Q ss_pred HHHHHHHHHHHHHHHHHhhhccCCC------HHHHHHHHHHHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHHHHHHH
Q 018398 119 AVLVSPFFFWGTAMVAMKEVLPKAG------TFFVAAFRLIPAGLLLITFASSQGRKLPSGFNAWVSIFLFALVDASCFQ 192 (356)
Q Consensus 119 l~ll~aa~~~~~~~~~~k~~~~~~~------p~~~~~~r~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 192 (356)
.-++..+++||...++.|......+ .....+.|-...... . +.+.+.-.++.+. .
T Consensus 6 ~~lvaVgllWG~Tnplirrgs~g~~~v~~~~~k~~~~lqe~~tl~l--------------~----w~Y~iPFllNqcg-S 66 (125)
T KOG4831|consen 6 DKLVAVGLLWGATNPLIRRGSLGWDKVKSSSRKIMIALQEMKTLFL--------------N----WEYLIPFLLNQCG-S 66 (125)
T ss_pred HHHHHHHHHHccccHHHHHHHhhHhhccCchHHHHHHHHHHHHHHH--------------h----HHHHHHHHHHHhh-H
Confidence 3467888999999999997665322 223333333221111 1 1222333444343 4
Q ss_pred HHHHHHhhccChhHHHHH-HhhHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHhh
Q 018398 193 GFLAQGLQRTSAGLGSVI-IDSQPLSVAVLAALLFGESIGLVGAGGLVLGVIGLLLLE 249 (356)
Q Consensus 193 ~~~~~al~~~~~~~a~~i-~~l~pv~~~il~~~~l~e~~~~~~~~g~~l~~~Gv~ll~ 249 (356)
.+||.-+++++.+.+.-+ +.+.-.|+.+.+..+..|....+.++|..+.++|+.+..
T Consensus 67 aly~~tLa~a~islavpv~nsltfafta~~G~~LGE~~~g~~a~lGt~liv~Gi~Lci 124 (125)
T KOG4831|consen 67 ALYYLTLASAPISLAVPVTNSLTFAFTAIFGKALGEETQGGLALLGTSLIVFGIWLCI 124 (125)
T ss_pred HHHHHHHhcCCceeeeeecchhHHHHHHHHHHHhccccccceeehhhhHHhhhhhhee
Confidence 788999999999999855 888999999999766556677888999999999987643
No 90
>KOG1582 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]
Probab=92.07 E-value=1.7 Score=39.28 Aligned_cols=110 Identities=15% Similarity=0.101 Sum_probs=81.9
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHhCCCC-------CCChHHHHHHHHHHHHHHHHHHHHHHHHhhccChhHHHHHHhhH
Q 018398 142 AGTFFVAAFRLIPAGLLLITFASSQGRKL-------PSGFNAWVSIFLFALVDASCFQGFLAQGLQRTSAGLGSVIIDSQ 214 (356)
Q Consensus 142 ~~p~~~~~~r~~~~~l~~~~~~~~~~~~~-------~~~~~~~~~~~~~g~~~~~~~~~~~~~al~~~~~~~a~~i~~l~ 214 (356)
-+..++.+..+.++...++..+...+.-. ..+.+.....++.+..+ .++..+..--++.-++..++.+...-
T Consensus 218 ~ss~EmvfySy~iG~vflf~~mvlTge~f~a~~fcaehp~~tyGy~~~~s~~g-ylG~~~VLalI~~fGA~~aatvTTaR 296 (367)
T KOG1582|consen 218 ASSSEMVFYSYGIGFVFLFAPMVLTGELFSAWTFCAEHPVRTYGYAFLFSLAG-YLGIVFVLALIKLFGALIAATVTTAR 296 (367)
T ss_pred CCcceEEEeeecccHHHHHHHHHhcccchhhhHHHHhCcHhHHHHHHHHHHHh-HhhHHHHHHHHHHhchhHHHHHHHhH
Confidence 44678888888888888877776654322 22344555555555555 34434444445567888888888889
Q ss_pred HHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHhhccC
Q 018398 215 PLSVAVLAALLFGESIGLVGAGGLVLGVIGLLLLEAPA 252 (356)
Q Consensus 215 pv~~~il~~~~l~e~~~~~~~~g~~l~~~Gv~ll~~~~ 252 (356)
=.++++++++++-++++....-+..+++.|+++-..+.
T Consensus 297 KavTi~lSfllFsKPfT~qy~~~gllv~lgI~Ln~ysk 334 (367)
T KOG1582|consen 297 KAVTILLSFLLFSKPFTEQYVWSGLLVVLGIYLNMYSK 334 (367)
T ss_pred hHHHHHHHHHHHcCchHHHHhhhhHHHHHHHHhhcccC
Confidence 99999999999999999999999999999999988876
No 91
>TIGR00803 nst UDP-galactose transporter. NSTs generally appear to function by antiport mechanisms, exchanging a nucleotide-sugar for a nucleotide. Thus, CMP-sialic acid is exchanged for CMP; GDP-mannose is preferentially exchanged for GMP, and UDP-galactose and UDP-N-acetylglucosamine are exchanged for UMP (or possibly UDP). Other nucleotide sugars (e.g., GDP-fucose, UDP-xylose, UDP-glucose, UDP-N-acetylgalactosamine, etc.) may also be transported in exchange for various nucleotides, but their transporters have not been molecularly characterized. Each compound appears to be translocated by its own transport protein. Transport allows the compound, synthesized in the cytoplasm, to be exported to the lumen of the Golgi apparatus or the endoplasmic reticulum where it is used for the synthesis of glycoproteins and glycolipids.
Probab=91.93 E-value=2.1 Score=37.77 Aligned_cols=82 Identities=15% Similarity=-0.027 Sum_probs=51.1
Q ss_pred HHHHhhHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHhhccCC-----------------CC-----CCCchhhHHH
Q 018398 208 SVIIDSQPLSVAVLAALLFGESIGLVGAGGLVLGVIGLLLLEAPAF-----------------DE-----SNSSLWGSGE 265 (356)
Q Consensus 208 ~~i~~l~pv~~~il~~~~l~e~~~~~~~~g~~l~~~Gv~ll~~~~~-----------------~~-----~~~~~~~~G~ 265 (356)
.......++++++..+.+.++|++..++++.++...|+......+. +. ....+...|.
T Consensus 8 ~~~~s~~l~~v~l~~~~~~~~~~~~~~i~~~~l~~~g~l~~~ls~~q~~al~~l~~~~~~~~~~~~~~~~~~~g~~~~g~ 87 (222)
T TIGR00803 8 IIFKQNNLVLIALGNLLAAGKQVTQLKILSTALMTLGSLVASLGDDQWFSLKLLKLGVAIVQMVQSSAKTLMFGNPVVGL 87 (222)
T ss_pred HHHHhcchHHHHHhcccccceeeehHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHhHeeeecCCCCccccccccHHHHH
Confidence 4456667777777777777888777788887777777664222110 01 0112344566
Q ss_pred HHHHHHHHHHHHHHHHHhhhccCC
Q 018398 266 WWMLLAAQSMAVGTVMVRWVSKYS 289 (356)
Q Consensus 266 llaLlaa~~~a~~~v~~r~~~~~~ 289 (356)
...+.+..+-+...++.++..++.
T Consensus 88 ~~~l~a~~~~~~~~~y~e~~~k~~ 111 (222)
T TIGR00803 88 SAVLSALLSSGFAGVYFEKILKDG 111 (222)
T ss_pred HHHHHHHHHHhhhHHHHHHcccCC
Confidence 667777777677777777765543
No 92
>PF02694 UPF0060: Uncharacterised BCR, YnfA/UPF0060 family; InterPro: IPR003844 This entry describes integral membrane proteins of unknown function.; GO: 0016020 membrane
Probab=91.71 E-value=1.5 Score=33.70 Aligned_cols=55 Identities=13% Similarity=-0.004 Sum_probs=44.1
Q ss_pred HHhhccChhHHH-HHHhhHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHhhcc
Q 018398 197 QGLQRTSAGLGS-VIIDSQPLSVAVLAALLFGESIGLVGAGGLVLGVIGLLLLEAP 251 (356)
Q Consensus 197 ~al~~~~~~~a~-~i~~l~pv~~~il~~~~l~e~~~~~~~~g~~l~~~Gv~ll~~~ 251 (356)
..++-.+.+.+. .-.....+...+..+.+-|+++++.+++|..+|++|+.++...
T Consensus 49 ~Tl~p~~fGRvYAAYGGvfI~~Sl~W~w~vdg~~Pd~~D~iGa~i~L~G~~iI~~~ 104 (107)
T PF02694_consen 49 LTLQPAAFGRVYAAYGGVFIVASLLWGWLVDGVRPDRWDWIGAAICLVGVAIILFA 104 (107)
T ss_pred hhcCcccchhHHHHhhhhHHHHHHHHHhhhcCcCCChHHHHhHHHHHHhHHheEec
Confidence 334445555553 4467788888999999999999999999999999999998763
No 93
>KOG1583 consensus UDP-N-acetylglucosamine transporter [Carbohydrate transport and metabolism]
Probab=91.46 E-value=0.9 Score=41.17 Aligned_cols=157 Identities=12% Similarity=0.021 Sum_probs=96.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhC-CCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhhcc-ChhHHHHHHhhHHHHHHHHH
Q 018398 145 FFVAAFRLIPAGLLLITFASSQG-RKLPSGFNAWVSIFLFALVDASCFQGFLAQGLQRT-SAGLGSVIIDSQPLSVAVLA 222 (356)
Q Consensus 145 ~~~~~~r~~~~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~al~~~-~~~~a~~i~~l~pv~~~il~ 222 (356)
-.+++.++++.+.--+++.-... .+.+.+.+++..... ..+..+.+-.+|+++- +.-.=.++..-.++.+++++
T Consensus 34 NLITFaqFlFia~eGlif~skf~~~k~kiplk~Y~i~V~----mFF~vnv~NN~al~f~I~~PlHiIfRsgsll~nM~~g 109 (330)
T KOG1583|consen 34 NLITFAQFLFIATEGLIFTSKFFTVKPKIPLKDYAITVA----MFFIVNVTNNYALKFNIPMPLHIIFRSGSLLANMILG 109 (330)
T ss_pred eehHHHHHHHHHHhceeeeccccccCCCCchhhhheehh----eeeeeeeeccceeeecccceEEEEEecCcHHHHHHHH
Confidence 45677777766666655542111 112223344332222 2234456667888873 44334456888999999999
Q ss_pred HHHhCCCCcHHHHHHHHHHHHHHHHhhccCCC-----------C---CCCchhhHHHHHHHHHHHHHHHHHHH----Hhh
Q 018398 223 ALLFGESIGLVGAGGLVLGVIGLLLLEAPAFD-----------E---SNSSLWGSGEWWMLLAAQSMAVGTVM----VRW 284 (356)
Q Consensus 223 ~~~l~e~~~~~~~~g~~l~~~Gv~ll~~~~~~-----------~---~~~~~~~~G~llaLlaa~~~a~~~v~----~r~ 284 (356)
++++|+|.+.+|+..+++.-+|+++-...+.. + .+...+..|..+...+-+.-|.-.++ .||
T Consensus 110 ~il~~k~Ys~~Qy~Sv~~iTiGiiIcTl~s~~d~~~~~~~l~~~~~~~~~~~w~iGi~lL~~al~~sa~mgiyqE~~Y~k 189 (330)
T KOG1583|consen 110 WILLGKRYSLRQYSSVLMITIGIIICTLFSSKDGRSKLSGLDSGSAQSDFFWWLIGIALLVFALLLSAYMGIYQETTYQK 189 (330)
T ss_pred HHhccceeehhhhhhHHhhhhhheeEEeecCcchhhhhcccccCcccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999988764411 1 11123456665544444444444444 344
Q ss_pred hccCCChHHHHHHHHHHHHHHHH
Q 018398 285 VSKYSDPVMATGWHMVIGGLPLM 307 (356)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~i~~~ 307 (356)
..+ |+-+.++|.-+......+
T Consensus 190 yGK--h~~EalFytH~LsLP~Fl 210 (330)
T KOG1583|consen 190 YGK--HWKEALFYTHFLSLPLFL 210 (330)
T ss_pred hcC--ChHHHHHHHHHhccchHH
Confidence 433 688888888877655433
No 94
>KOG1442 consensus GDP-fucose transporter [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=89.55 E-value=0.46 Score=42.97 Aligned_cols=135 Identities=17% Similarity=0.169 Sum_probs=91.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhhccCCC--HHHHHHHHHHHHHHHHHHHHHHhCC-----CCC--CChHHHHHHHHHH
Q 018398 114 MLLEWAVLVSPFFFWGTAMVAMKEVLPKAG--TFFVAAFRLIPAGLLLITFASSQGR-----KLP--SGFNAWVSIFLFA 184 (356)
Q Consensus 114 ~~~g~l~ll~aa~~~~~~~~~~k~~~~~~~--p~~~~~~r~~~~~l~~~~~~~~~~~-----~~~--~~~~~~~~~~~~g 184 (356)
.+.|.++.+++.+.-+.+.+.+|.....++ -+.+++++.+.+.++++|.....+. ..+ +..+-|..+.+-|
T Consensus 183 s~~GvifGVlaSl~vAlnaiytkk~l~~v~~~iw~lt~ynnv~a~lLflpll~lnge~~~v~~~~~l~a~~Fw~~mtLsg 262 (347)
T KOG1442|consen 183 SWIGVIFGVLASLAVALNAIYTKKVLPPVGDCIWRLTAYNNVNALLLFLPLLILNGEFQAVVGFPHLPAIKFWILMTLSG 262 (347)
T ss_pred chhhhHHHHHHHHHHHHHHHhhheecccccCeehhhHHHHHHHHHHHHHHHHHHcchHHHHcCcccchHHHHHHHHHHHH
Confidence 367999999999999999999997766544 7789999999999999999887653 111 2345556666667
Q ss_pred HHHHHHHHHHHHHHhhccChhHHHHHHhhHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHhh
Q 018398 185 LVDASCFQGFLAQGLQRTSAGLGSVIIDSQPLSVAVLAALLFGESIGLVGAGGLVLGVIGLLLLE 249 (356)
Q Consensus 185 ~~~~~~~~~~~~~al~~~~~~~a~~i~~l~pv~~~il~~~~l~e~~~~~~~~g~~l~~~Gv~ll~ 249 (356)
+++..++|. ..+=++.+++.+-.+=..--...-.+++..+++|.-+...|-+-++++.|-..-.
T Consensus 263 lfgF~mgyv-Tg~QIK~TSplThnISgTAka~aQTvlAv~~y~E~ks~lwwtsn~~vLvgs~~YT 326 (347)
T KOG1442|consen 263 LFGFAMGYV-TGWQIKVTSPLTHNISGTAKAAAQTVLAVAYYSETKSGLWWTSNIVVLVGSLAYT 326 (347)
T ss_pred HHHHHhhhe-eeEEEEecccceeeecHhHHHHHHHHHHHHHHHHHhhhheeeeeEEEEehhHHHH
Confidence 777555532 2333444444332222222233345677788999988888888777777655444
No 95
>PF04657 DUF606: Protein of unknown function, DUF606; InterPro: IPR006750 This family contains uncharacterised bacterial proteins.
Probab=89.00 E-value=2.7 Score=34.27 Aligned_cols=86 Identities=15% Similarity=0.113 Sum_probs=59.2
Q ss_pred HHHHHHHHHHHHHHHHHHhhhccCCC-hHHHHHHHHHHHHHHHHHHHHhhcCCCCCcccccCCHHHHHHHHHHHHHHHHH
Q 018398 265 EWWMLLAAQSMAVGTVMVRWVSKYSD-PVMATGWHMVIGGLPLMVISVLNHDPVYGESVKELTSSDILALLYTSIFGSAI 343 (356)
Q Consensus 265 ~llaLlaa~~~a~~~v~~r~~~~~~~-~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lgi~~s~l 343 (356)
.+++++++++-++...+..++.++.+ ++.........+.+.+.++.++.+++... ..... .|+ .|+|.+..++
T Consensus 3 ~lla~~aG~~i~~q~~~N~~L~~~~gs~~~as~i~~~~G~i~~~i~~~~~~~~~~~-~~~~~---p~w--~~lGG~lG~~ 76 (138)
T PF04657_consen 3 ILLALLAGALIALQAAFNGQLGKALGSPLVASFISFGVGFILLLIILLITGRPSLA-SLSSV---PWW--AYLGGLLGVF 76 (138)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHhcccccc-hhccC---ChH--HhccHHHHHH
Confidence 57889999999999999999888876 99999999999999999888887765221 11111 122 2224344445
Q ss_pred HHHHHHHHhccCC
Q 018398 344 SYGVYFYSATKGK 356 (356)
Q Consensus 344 ~~~l~~~al~~~g 356 (356)
-..+..+.++|.|
T Consensus 77 ~V~~~~~~vp~lG 89 (138)
T PF04657_consen 77 FVLSNIILVPRLG 89 (138)
T ss_pred HHHHHHHHhhhhh
Confidence 5555556555543
No 96
>PF07857 DUF1632: CEO family (DUF1632); InterPro: IPR012435 These sequences are found in hypothetical eukaryotic proteins of unknown function. The region concerned is approximately 280 residues long.
Probab=87.62 E-value=2.3 Score=38.46 Aligned_cols=59 Identities=7% Similarity=0.091 Sum_probs=41.9
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHhhhccCC--------CHH----HHHHHHHHHHHHHHHHHHHHhCCC
Q 018398 111 ELGMLLEWAVLVSPFFFWGTAMVAMKEVLPKA--------GTF----FVAAFRLIPAGLLLITFASSQGRK 169 (356)
Q Consensus 111 ~~~~~~g~l~ll~aa~~~~~~~~~~k~~~~~~--------~p~----~~~~~r~~~~~l~~~~~~~~~~~~ 169 (356)
.+++..|.++.+++.+++|.+++-.++..++- .++ .....-++.+.+.++.++..+|.+
T Consensus 178 ~~~RivG~~LAv~aGvlyGs~fvPv~Yi~~~~~~y~~as~~~ldYvFs~f~GIfltSt~~F~~Y~~~~rn~ 248 (254)
T PF07857_consen 178 RKKRIVGIILAVFAGVLYGSNFVPVIYIQDHPDIYPGASQNGLDYVFSHFSGIFLTSTVYFVIYCIIKRNK 248 (254)
T ss_pred ccchhHhHHHHHHHHHHHhcccchHHHHHhCccccCCCCCcchheeHHHHhhHHHHHHHHHHHHHHhhcCC
Confidence 34568899999999999999999988887654 222 333344556666777777776654
No 97
>COG1742 Uncharacterized conserved protein [Function unknown]
Probab=86.42 E-value=5.5 Score=30.48 Aligned_cols=43 Identities=7% Similarity=-0.118 Sum_probs=36.1
Q ss_pred HHhhHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHhhccC
Q 018398 210 IIDSQPLSVAVLAALLFGESIGLVGAGGLVLGVIGLLLLEAPA 252 (356)
Q Consensus 210 i~~l~pv~~~il~~~~l~e~~~~~~~~g~~l~~~Gv~ll~~~~ 252 (356)
-.....+...+..+++-|.++++.+|+|.++|++|+.++...+
T Consensus 64 YGGvyI~~sL~W~~~Vdg~~pdr~D~~Ga~icl~G~~vil~~p 106 (109)
T COG1742 64 YGGVYIAASLAWLWVVDGVRPDRYDWIGAAICLAGVAVILFGP 106 (109)
T ss_pred hcchHHHHHHHHHHHHcCcCCcHHHhhhHHHHHhceeeeEeCC
Confidence 3556677778888888899999999999999999998887643
No 98
>KOG1583 consensus UDP-N-acetylglucosamine transporter [Carbohydrate transport and metabolism]
Probab=85.86 E-value=7.9 Score=35.28 Aligned_cols=132 Identities=15% Similarity=0.138 Sum_probs=82.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhccC--CCHHHHHHHHHHHHHHHHHHHHH--------HhCCC---CC----CChHHH
Q 018398 115 LLEWAVLVSPFFFWGTAMVAMKEVLPK--AGTFFVAAFRLIPAGLLLITFAS--------SQGRK---LP----SGFNAW 177 (356)
Q Consensus 115 ~~g~l~ll~aa~~~~~~~~~~k~~~~~--~~p~~~~~~r~~~~~l~~~~~~~--------~~~~~---~~----~~~~~~ 177 (356)
..|+.++.++.+.-+.+.+......+. =++-+.+++--.+....++...- ....+ .+ ..+..|
T Consensus 163 ~iGi~lL~~al~~sa~mgiyqE~~Y~kyGKh~~EalFytH~LsLP~Flf~~~div~~~~~~~~se~~~~p~~g~~vP~~~ 242 (330)
T KOG1583|consen 163 LIGIALLVFALLLSAYMGIYQETTYQKYGKHWKEALFYTHFLSLPLFLFMGDDIVSHWRLAFKSESYLIPLLGFKVPSMW 242 (330)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHhccchHHHhcchHHHHHHHHhcCcceeccccCccccHHH
Confidence 467777777777766666665555543 45888888888776655543321 00111 01 112333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhc----cChhHHHHHHhhHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHhhcc
Q 018398 178 VSIFLFALVDASCFQGFLAQGLQR----TSAGLGSVIIDSQPLSVAVLAALLFGESIGLVGAGGLVLGVIGLLLLEAP 251 (356)
Q Consensus 178 ~~~~~~g~~~~~~~~~~~~~al~~----~~~~~a~~i~~l~pv~~~il~~~~l~e~~~~~~~~g~~l~~~Gv~ll~~~ 251 (356)
..++.- ++.+++-..++.. +++.+.+++..+-=.+..+++.+.++.++++..|+|.++++.|..+....
T Consensus 243 ~yLl~n-----~L~Qy~CikgVy~L~te~~sLTVTlvltlRKFvSLl~SiiyF~Npft~~h~lGa~lVF~Gt~~fa~~ 315 (330)
T KOG1583|consen 243 VYLLFN-----VLTQYFCIKGVYILTTETSSLTVTLVLTLRKFVSLLFSIIYFENPFTPWHWLGAALVFFGTLLFANV 315 (330)
T ss_pred HHHHHH-----HHHHHHHHHhhhhhhceecceEEEEeeeHHHHHHHhheeeEecCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 333322 2222332333322 45555667777888899999999999999999999999999999887653
No 99
>PF04342 DUF486: Protein of unknown function, DUF486; InterPro: IPR007437 This family contains several proteins of uncharacterised function.
Probab=81.84 E-value=22 Score=27.44 Aligned_cols=51 Identities=14% Similarity=0.077 Sum_probs=34.3
Q ss_pred HhhccChhHHHHH-HhhHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHh
Q 018398 198 GLQRTSAGLGSVI-IDSQPLSVAVLAALLFGESIGLVGAGGLVLGVIGLLLL 248 (356)
Q Consensus 198 al~~~~~~~a~~i-~~l~pv~~~il~~~~l~e~~~~~~~~g~~l~~~Gv~ll 248 (356)
+.+..+..+--++ -..+-.+-++++.+++||++++....|.++.++++..+
T Consensus 55 G~~~~s~~QLKi~QEvitL~vF~~Fsv~~l~E~l~~n~l~af~~i~~av~fi 106 (108)
T PF04342_consen 55 GYQTFSLAQLKIIQEVITLVVFAPFSVFYLGEPLKWNYLWAFLCILGAVYFI 106 (108)
T ss_pred hccccCHHHHHHHHHHHhhheeHHHHHHHhCCCccHHHHHHHHHHHHhhhee
Confidence 3444455555444 22233334566778999999999999999888887654
No 100
>PRK02971 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnF; Provisional
Probab=81.67 E-value=9 Score=30.85 Aligned_cols=72 Identities=13% Similarity=0.119 Sum_probs=46.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhccCCChHHHHHHHHHHHHHHHHHHHHhhcCCCCCcccccCCHHHHHHHHHHHHHHHH
Q 018398 263 SGEWWMLLAAQSMAVGTVMVRWVSKYSDPVMATGWHMVIGGLPLMVISVLNHDPVYGESVKELTSSDILALLYTSIFGSA 342 (356)
Q Consensus 263 ~G~llaLlaa~~~a~~~v~~r~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lgi~~s~ 342 (356)
+|+++.+++.++-+...++.|+-.++.+....... . . ...... .+ ....+++|+++.+
T Consensus 2 ~~~~~i~~sv~l~~~gQl~~K~g~~~~g~~~~~~~-~----~-~~~~~~-------------~~---p~~~i~lgl~~~~ 59 (129)
T PRK02971 2 MGYLWGLASVLLASVAQLSLKWGMSRLPLLSHAWD-F----I-AALLAF-------------GL---ALRAVLLGLAGYA 59 (129)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHhhCCCccchhH-H----H-HHHHHH-------------hc---cHHHHHHHHHHHH
Confidence 37889999999999999999987666543332111 0 0 000000 00 1225778889999
Q ss_pred HHHHHHHHHhccCC
Q 018398 343 ISYGVYFYSATKGK 356 (356)
Q Consensus 343 l~~~l~~~al~~~g 356 (356)
++|.+|++++++.+
T Consensus 60 la~~~w~~aL~~~~ 73 (129)
T PRK02971 60 LSMLCWLKALRYLP 73 (129)
T ss_pred HHHHHHHHHHHhCC
Confidence 99999999998864
No 101
>PF07698 7TM-7TMR_HD: 7TM receptor with intracellular HD hydrolase; InterPro: IPR011621 These bacterial 7TM receptor proteins have an intracellular domain IPR006674 from INTERPRO. This entry corresponds to the 7 helix transmembrane domain. These proteins also contain an N-terminal extracellular domain.
Probab=75.84 E-value=50 Score=28.23 Aligned_cols=38 Identities=18% Similarity=0.235 Sum_probs=25.5
Q ss_pred HHHHHHhhhccCCChHHHHHHHHHHHHHHHHHHHHhhc
Q 018398 277 VGTVMVRWVSKYSDPVMATGWHMVIGGLPLMVISVLNH 314 (356)
Q Consensus 277 ~~~v~~r~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 314 (356)
+.....|+.++|.+....-.+...+..+..+...++.+
T Consensus 116 ~~~~~~~~~~~R~~~i~ag~~v~l~~~~~~l~~~l~~~ 153 (194)
T PF07698_consen 116 VAIFSVRRIRSRSDIIKAGLLVGLVNALMILALGLIQG 153 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 33444567767777777777777777777776666554
No 102
>COG4657 RnfA Predicted NADH:ubiquinone oxidoreductase, subunit RnfA [Energy production and conversion]
Probab=72.94 E-value=55 Score=27.38 Aligned_cols=85 Identities=15% Similarity=0.149 Sum_probs=51.7
Q ss_pred HHHHHhCCCCcHHHHHHHH-------HHHHHHHHhhccCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHhhhccCCC---
Q 018398 221 LAALLFGESIGLVGAGGLV-------LGVIGLLLLEAPAFDESNSSLWGSGEWWMLLAAQSMAVGTVMVRWVSKYSD--- 290 (356)
Q Consensus 221 l~~~~l~e~~~~~~~~g~~-------l~~~Gv~ll~~~~~~~~~~~~~~~G~llaLlaa~~~a~~~v~~r~~~~~~~--- 290 (356)
...++-|..|+..+.+|+. +++.|+.++.... ..+..-....++.++++|++.+++...++++.+
T Consensus 88 ~Em~v~KtsP~LYr~LGIfLPLITTNCaVLgvaLln~~~-----~~~f~qsv~~gf~a~lGfslvmvlfA~iRER~~~ad 162 (193)
T COG4657 88 TEMVVRKTSPTLYRLLGIFLPLITTNCAVLGVALLNINE-----GHNFLQSVVYGFGAALGFSLVMVLFAAIRERLALAD 162 (193)
T ss_pred HHHHHHccCHHHHHHHHHhhhhHhhchHHHHHHHHHhhh-----hhhHHHHHHHHhhhHhhHHHHHHHHHHHHHHHHHhc
Confidence 3444455666666666665 3678888887644 223445678889999999999998765555432
Q ss_pred ---hHHHHHHHHHHHHHHHHHHH
Q 018398 291 ---PVMATGWHMVIGGLPLMVIS 310 (356)
Q Consensus 291 ---~~~~~~~~~~~~~i~~~~~~ 310 (356)
|..-..+..+.+.++++.++
T Consensus 163 vP~~frG~~ialitagLmSlaFm 185 (193)
T COG4657 163 VPAPFRGAAIALITAGLMSLAFM 185 (193)
T ss_pred CCCCCCCcchHHHHHHHHHHHHc
Confidence 22333444444444444443
No 103
>PF06570 DUF1129: Protein of unknown function (DUF1129); InterPro: IPR009214 There are currently no experimental data for members of this group or their homologues. However, these proteins contain predicted integral membrane proteins (with several transmembrane segments).
Probab=72.49 E-value=65 Score=28.04 Aligned_cols=30 Identities=7% Similarity=0.019 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhccChh
Q 018398 175 NAWVSIFLFALVDASCFQGFLAQGLQRTSAG 205 (356)
Q Consensus 175 ~~~~~~~~~g~~~~~~~~~~~~~al~~~~~~ 205 (356)
..+++.++.+++. .+.+...+......++.
T Consensus 144 ~~~~k~~~~~~~~-~~~w~~~~~~~~~lp~~ 173 (206)
T PF06570_consen 144 PSWWKYILISVLA-MVLWIVIFVLTSFLPPV 173 (206)
T ss_pred cHHHHHHHHHHHH-HHHHHHHHHHHHHcccc
Confidence 4445544444444 33334444444444444
No 104
>KOG3912 consensus Predicted integral membrane protein [General function prediction only]
Probab=71.27 E-value=82 Score=29.04 Aligned_cols=138 Identities=14% Similarity=0.194 Sum_probs=86.8
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHhhhcc--CCCHHHHHHHHHHHHHHHHH----HHHHHh-CCCC----CCChHHHHHH
Q 018398 112 LGMLLEWAVLVSPFFFWGTAMVAMKEVLP--KAGTFFVAAFRLIPAGLLLI----TFASSQ-GRKL----PSGFNAWVSI 180 (356)
Q Consensus 112 ~~~~~g~l~ll~aa~~~~~~~~~~k~~~~--~~~p~~~~~~r~~~~~l~~~----~~~~~~-~~~~----~~~~~~~~~~ 180 (356)
+....|.++.+.+-++-++.++.-.+-.. +++|.+...+.-..+..++. |+.+.. ++.. +-.+.+|...
T Consensus 172 s~iitGdllIiiaqiivaiQ~v~Eek~l~~~nV~pl~avg~eGlfG~v~~slL~i~m~yi~~~~sfS~~~~g~~eD~~~~ 251 (372)
T KOG3912|consen 172 SSIITGDLLIIIAQIIVAIQMVCEEKQLKKSNVAPLQAVGWEGLFGLVILSLLAIPMYYIPSGDSFSCNPRGVLEDWGDA 251 (372)
T ss_pred ccchhhhHHHHHHHHHHHHHHHHHHhhhhhccCCHHHHhhhhhhHHHHHHHHHHHHHhheecCCcCcCCCCcchhhHHHH
Confidence 34467899999999999999988554443 58999999988777644333 222222 1111 1122333221
Q ss_pred ---------HHHHHHHHHHHHHHHH-HHh---hccChhHHHHHHhhHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHH
Q 018398 181 ---------FLFALVDASCFQGFLA-QGL---QRTSAGLGSVIIDSQPLSVAVLAALLFGESIGLVGAGGLVLGVIGLLL 247 (356)
Q Consensus 181 ---------~~~g~~~~~~~~~~~~-~al---~~~~~~~a~~i~~l~pv~~~il~~~~l~e~~~~~~~~g~~l~~~Gv~l 247 (356)
+.+...+...+..++. .++ ++.++++=.++-.+-..+.=+++....-|.+...|+.|.++-+.|+.+
T Consensus 252 ~~~~~e~p~l~val~~~~vSiAffNfaGlsitk~~SattRmllD~lRt~~IWv~si~m~~E~f~llqilGFliLi~Gi~l 331 (372)
T KOG3912|consen 252 FAALQESPSLAVALIGFTVSIAFFNFAGLSITKELSATTRMLLDSLRTYVIWVFSIAMGWEYFHLLQILGFLILIMGIIL 331 (372)
T ss_pred HHHhcCCchhHHHHhhhhhheeeeeehhhHHHHHhhHHHHHHHHhhhhhhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1222223233333332 222 345666666777777777777777788999999999999999999876
Q ss_pred hh
Q 018398 248 LE 249 (356)
Q Consensus 248 l~ 249 (356)
-.
T Consensus 332 Y~ 333 (372)
T KOG3912|consen 332 YN 333 (372)
T ss_pred HH
Confidence 54
No 105
>KOG2766 consensus Predicted membrane protein [Function unknown]
Probab=70.82 E-value=5.5 Score=35.86 Aligned_cols=138 Identities=7% Similarity=0.021 Sum_probs=90.5
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHhhhccCCCHHHHHHHHHHHHHHHHHHHHHHhCCCCCC-Ch-HHHHHHHHHHHHHHH
Q 018398 112 LGMLLEWAVLVSPFFFWGTAMVAMKEVLPKAGTFFVAAFRLIPAGLLLITFASSQGRKLPS-GF-NAWVSIFLFALVDAS 189 (356)
Q Consensus 112 ~~~~~g~l~ll~aa~~~~~~~~~~k~~~~~~~p~~~~~~r~~~~~l~~~~~~~~~~~~~~~-~~-~~~~~~~~~g~~~~~ 189 (356)
.+..+|..+.++.+-+++.+++.-....++.+-.+++..--+.++++-.+-....+.+... .| .+...++. ..++.+
T Consensus 162 snp~~GD~lvi~GATlYaVSNv~EEflvkn~d~~elm~~lgLfGaIIsaIQ~i~~~~~~~tl~w~~~i~~yl~-f~L~MF 240 (336)
T KOG2766|consen 162 SNPVKGDFLVIAGATLYAVSNVSEEFLVKNADRVELMGFLGLFGAIISAIQFIFERHHVSTLHWDSAIFLYLR-FALTMF 240 (336)
T ss_pred CCCccCcEEEEecceeeeeccccHHHHHhcCcHHHHHHHHHHHHHHHHHHHHhhhccceeeEeehHHHHHHHH-HHHHHH
Confidence 3446788899999999999999999999999998888887778887777665554443322 11 11222222 333333
Q ss_pred HHHHHHHHHhhccChhHHHHHHhhHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHhhccC
Q 018398 190 CFQGFLAQGLQRTSAGLGSVIIDSQPLSVAVLAALLFGESIGLVGAGGLVLGVIGLLLLEAPA 252 (356)
Q Consensus 190 ~~~~~~~~al~~~~~~~a~~i~~l~pv~~~il~~~~l~e~~~~~~~~g~~l~~~Gv~ll~~~~ 252 (356)
..|.+.-.-++..+++...+-.-++-++..++ ..++-++.|.-.++.+....|.++-...+
T Consensus 241 llYsl~pil~k~~~aT~~nlslLTsDmwsl~i--~~FgYhv~wLY~laF~~i~~GliiYs~re 301 (336)
T KOG2766|consen 241 LLYSLAPILIKTNSATMFNLSLLTSDMWSLLI--RTFGYHVDWLYFLAFATIATGLIIYSTRE 301 (336)
T ss_pred HHHHhhHHheecCCceEEEhhHhHHHHHHHHH--HHHhcchhhhhHHHHHHHHHhhEEeeccc
Confidence 33344444455555555444445555666555 45577799999999999999987775543
No 106
>PF05297 Herpes_LMP1: Herpesvirus latent membrane protein 1 (LMP1); InterPro: IPR007961 This family consists of several latent membrane protein 1 or LMP1s mostly from Epstein-Barr virus (strain GD1) (HHV-4) (Human herpesvirus 4). LMP1 of HHV-4 is a 62-65 kDa plasma membrane protein possessing six membrane spanning regions, a short cytoplasmic N terminus and a long cytoplasmic carboxy tail of 200 amino acids. HHV-4 virus latent membrane protein 1 (LMP1) is essential for HHV-4 mediated transformation and has been associated with several cases of malignancies. HHV-4-like viruses in Macaca fascicularis (Cynomolgus monkeys) have been associated with high lymphoma rates in immunosuppressed monkeys [].; GO: 0019087 transformation of host cell by virus, 0016021 integral to membrane; PDB: 1CZY_E 1ZMS_B.
Probab=70.10 E-value=1.4 Score=39.85 Aligned_cols=110 Identities=15% Similarity=0.147 Sum_probs=0.0
Q ss_pred hhccChhHHHHHHhhHHHHHHHHHH-HHhCCC-CcHHHHHHHHHHHHHHHHhhccCCCCCCCchhhHHHHHHHHHH---H
Q 018398 199 LQRTSAGLGSVIIDSQPLSVAVLAA-LLFGES-IGLVGAGGLVLGVIGLLLLEAPAFDESNSSLWGSGEWWMLLAA---Q 273 (356)
Q Consensus 199 l~~~~~~~a~~i~~l~pv~~~il~~-~~l~e~-~~~~~~~g~~l~~~Gv~ll~~~~~~~~~~~~~~~G~llaLlaa---~ 273 (356)
++-.+-+..+++++...++++|+-. +++|+| +-+...+.++++++-..+...=...+ .....|.++.++.. +
T Consensus 44 msd~t~~a~~vl~sfAvvliiIIiIImlF~RrLLCPLGlLCiilimi~lLv~~L~tLtG---Q~LF~Gi~~l~l~~lLaL 120 (381)
T PF05297_consen 44 MSDLTQGALTVLYSFAVVLIIIIIIIMLFKRRLLCPLGLLCIILIMIVLLVSMLWTLTG---QTLFVGIVILFLCCLLAL 120 (381)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HhccccchHHHHHHHHHHHHHHHHHHHHHHHhhcCcchHHHHHHHHHHHHHHHHHHhhc---cHHHHHHHHHHHHHHHHH
Confidence 3334444444554444444433332 333444 56666666666655444333322111 22234544333222 1
Q ss_pred HHHHHHHHHhhhccCCChHHHHHHHHHH-HHHHHHHHHHhh
Q 018398 274 SMAVGTVMVRWVSKYSDPVMATGWHMVI-GGLPLMVISVLN 313 (356)
Q Consensus 274 ~~a~~~v~~r~~~~~~~~~~~~~~~~~~-~~i~~~~~~~~~ 313 (356)
..=+|+.+.|++. .+.++++++...+ -++++++++++.
T Consensus 121 ~vW~Ym~lLr~~G--As~WtiLaFcLAF~LaivlLIIAv~L 159 (381)
T PF05297_consen 121 GVWFYMWLLRELG--ASFWTILAFCLAFLLAIVLLIIAVLL 159 (381)
T ss_dssp -----------------------------------------
T ss_pred HHHHHHHHHHHhh--hHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2223344555553 3456655544433 334444444443
No 107
>KOG2234 consensus Predicted UDP-galactose transporter [Carbohydrate transport and metabolism]
Probab=69.53 E-value=1e+02 Score=29.16 Aligned_cols=136 Identities=14% Similarity=0.103 Sum_probs=84.6
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHhhhccC--CCHHHHHHHHHHHHHHHHHHHHHHhCCC-C-----CC--ChHHHHHHH
Q 018398 112 LGMLLEWAVLVSPFFFWGTAMVAMKEVLPK--AGTFFVAAFRLIPAGLLLITFASSQGRK-L-----PS--GFNAWVSIF 181 (356)
Q Consensus 112 ~~~~~g~l~ll~aa~~~~~~~~~~k~~~~~--~~p~~~~~~r~~~~~l~~~~~~~~~~~~-~-----~~--~~~~~~~~~ 181 (356)
.+...|..+++.++++=|...+....+.++ .+-+....--+..+.++.+.-++..+.. . -. .+..|...+
T Consensus 179 ~n~~~G~~avl~~c~~SgfAgvYfEkiLK~s~~s~wi~NiqL~~~g~~f~~l~~~~~d~~~i~~~gff~G~s~~vw~vVl 258 (345)
T KOG2234|consen 179 QNPFLGLVAVLVACFLSGFAGVYFEKILKGSNVSLWIRNIQLYFFGILFNLLTILLQDGEAINEYGFFYGYSSIVWLVVL 258 (345)
T ss_pred cchhhhHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHhhccccccccCCccccccHHHHHHHH
Confidence 445778888888888878777776666643 3333333333344444444444333211 1 11 112222222
Q ss_pred HHHHHHHHHHHHHHHHHhhccChhHHHHHHhhHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHhhccC
Q 018398 182 LFALVDASCFQGFLAQGLQRTSAGLGSVIIDSQPLSVAVLAALLFGESIGLVGAGGLVLGVIGLLLLEAPA 252 (356)
Q Consensus 182 ~~g~~~~~~~~~~~~~al~~~~~~~a~~i~~l~pv~~~il~~~~l~e~~~~~~~~g~~l~~~Gv~ll~~~~ 252 (356)
..++-| .+...=++|.+--.=..-..++.+++.+.++.+++-+++..-.+|+.+++..+.+-...+
T Consensus 259 ~~a~gG-----Llvs~v~KyADnIlK~f~~s~aiilt~v~S~~Lf~~~~t~~F~lG~~lVi~Si~lY~~~P 324 (345)
T KOG2234|consen 259 LNAVGG-----LLVSLVMKYADNILKGFSTSVAIILTTVASIALFDFQLTLYFLLGALLVILSIFLYSLYP 324 (345)
T ss_pred HHhccc-----hhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHccCCchHHHHHHHHHHHHHHHHhhcCC
Confidence 223322 444455667665555666677889999999999999999999999999999998888543
No 108
>PF06379 RhaT: L-rhamnose-proton symport protein (RhaT); InterPro: IPR004673 These proteins are members of the L-Rhamnose Symporter (RhaT) family. This family includes two characterised members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.; GO: 0015153 rhamnose transmembrane transporter activity, 0008645 hexose transport, 0016021 integral to membrane
Probab=66.44 E-value=1.2e+02 Score=28.72 Aligned_cols=137 Identities=9% Similarity=0.052 Sum_probs=66.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhhhc--------cCCCHHHHH----HHHHHHHHHHHHHHHHHh---CCCC------C
Q 018398 113 GMLLEWAVLVSPFFFWGTAMVAMKEVL--------PKAGTFFVA----AFRLIPAGLLLITFASSQ---GRKL------P 171 (356)
Q Consensus 113 ~~~~g~l~ll~aa~~~~~~~~~~k~~~--------~~~~p~~~~----~~r~~~~~l~~~~~~~~~---~~~~------~ 171 (356)
+..+|++.++++.++=++..+-..... .+.+|.... .+-+.-+++.-+.+++++ ++.. .
T Consensus 170 n~~kGl~iAv~sGv~Sa~fn~g~~ag~pi~~~a~a~G~~~l~~~l~~~vvv~~GGf~tN~~yc~~~l~~~k~~s~~~d~~ 249 (344)
T PF06379_consen 170 NFKKGLIIAVLSGVMSACFNFGLDAGKPIHEAAVAAGVNPLYANLPVYVVVLWGGFITNLIYCLILLAKNKNWSWKGDYS 249 (344)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHcCCCcHHHhCchhhhhhhhHHHHHHHHHHHHHhhcCCCccccccc
Confidence 445678887777766555443322111 123443322 233344555556666553 1211 0
Q ss_pred CChH-HHHHHHHHHHHHHHHHHHHHHHHhh--ccC----hhHHHHHHhhHHHHHHHHHHHHhCC------CCcHHHHHHH
Q 018398 172 SGFN-AWVSIFLFALVDASCFQGFLAQGLQ--RTS----AGLGSVIIDSQPLSVAVLAALLFGE------SIGLVGAGGL 238 (356)
Q Consensus 172 ~~~~-~~~~~~~~g~~~~~~~~~~~~~al~--~~~----~~~a~~i~~l~pv~~~il~~~~l~e------~~~~~~~~g~ 238 (356)
..+. ....+++..+.+..-+.-+++|++. .++ ...=.+.+.+..++.-+.+ +.+|| |.-+.-++|+
T Consensus 250 ~~~~~~~~N~~~~aLaG~lWy~qfffYg~G~s~lg~~~~~~sW~i~ma~~vl~snvwG-l~lkEWKg~s~kt~~vl~~G~ 328 (344)
T PF06379_consen 250 VAKPPLLKNYLFCALAGVLWYSQFFFYGMGESKLGASGPFSSWAIHMALIVLFSNVWG-LILKEWKGASKKTIRVLVLGI 328 (344)
T ss_pred cccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccccHHHHHHHHHHHHHHHHHH-HHHHHhccCCcccHHHHHHHH
Confidence 1111 1223333223332223334444443 343 2333566888888888888 66665 3344556777
Q ss_pred HHHHHHHHHhhc
Q 018398 239 VLGVIGLLLLEA 250 (356)
Q Consensus 239 ~l~~~Gv~ll~~ 250 (356)
++.++.+.++-.
T Consensus 329 ~vlI~s~~ivG~ 340 (344)
T PF06379_consen 329 AVLILSVVIVGY 340 (344)
T ss_pred HHHHHHHHHHhc
Confidence 777776666543
No 109
>PF09656 PGPGW: Putative transmembrane protein (PGPGW); InterPro: IPR019099 This entry represents proteins that contain three predicted transmembrane helices and an unusual motif with consensus sequence PGPGW.
Probab=64.33 E-value=20 Score=23.99 Aligned_cols=45 Identities=29% Similarity=0.412 Sum_probs=34.4
Q ss_pred HHHHHHHHHHHHHHHhhccCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHhhhcc
Q 018398 233 VGAGGLVLGVIGLLLLEAPAFDESNSSLWGSGEWWMLLAAQSMAVGTVMVRWVSK 287 (356)
Q Consensus 233 ~~~~g~~l~~~Gv~ll~~~~~~~~~~~~~~~G~llaLlaa~~~a~~~v~~r~~~~ 287 (356)
..++|.++.++|++++..|+ .|.++.+++-...+...-..|+..+
T Consensus 4 v~v~G~~lv~~Gii~~~lPG----------pG~l~i~~GL~iLa~ef~wArr~l~ 48 (53)
T PF09656_consen 4 VGVLGWVLVVAGIIMLPLPG----------PGLLVIFLGLAILATEFPWARRLLR 48 (53)
T ss_pred hhhHHHHHHHHHHHhhcCCC----------CcHHHHHHHHHHHHHhhHHHHHHHH
Confidence 45789999999999999876 1566777777778888777776543
No 110
>KOG4314 consensus Predicted carbohydrate/phosphate translocator [General function prediction only]
Probab=63.03 E-value=50 Score=28.68 Aligned_cols=139 Identities=16% Similarity=0.059 Sum_probs=81.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhhhccCCCHHHHHHHHHHHHHHHH-----HHHHH-HhCCCC--CCChHHHHHHHHHH
Q 018398 113 GMLLEWAVLVSPFFFWGTAMVAMKEVLPKAGTFFVAAFRLIPAGLLL-----ITFAS-SQGRKL--PSGFNAWVSIFLFA 184 (356)
Q Consensus 113 ~~~~g~l~ll~aa~~~~~~~~~~k~~~~~~~p~~~~~~r~~~~~l~~-----~~~~~-~~~~~~--~~~~~~~~~~~~~g 184 (356)
..+.|+...+.++..-+..-+.-|....+.+--....+-..++++=+ .++.+ ..+.+. ......|..+...+
T Consensus 132 ~e~iGi~~AV~SA~~aAlYKV~FK~~iGnAn~Gdaa~FmS~LGF~NL~~~~~~~lIL~~T~VE~~qsFA~~PWG~l~G~A 211 (290)
T KOG4314|consen 132 DEIIGIACAVGSAFMAALYKVLFKMFIGNANFGDAAHFMSCLGFFNLCFISFPALILAFTGVEHLQSFAAAPWGCLCGAA 211 (290)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHHhhhHHHHHHhchHHHHHHhhCCchhhhhHH
Confidence 34778888888888888888888876655432222222222222211 11111 112111 11112344444334
Q ss_pred HHHHHHHHHHHHHHhhccChhHHHHHHhhHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHhhccC
Q 018398 185 LVDASCFQGFLAQGLQRTSAGLGSVIIDSQPLSVAVLAALLFGESIGLVGAGGLVLGVIGLLLLEAPA 252 (356)
Q Consensus 185 ~~~~~~~~~~~~~al~~~~~~~a~~i~~l~pv~~~il~~~~l~e~~~~~~~~g~~l~~~Gv~ll~~~~ 252 (356)
.+. ...+.+...++..+.+-..++-+-+..--...+..++-+-..+-....+.+++++|-.++..|.
T Consensus 212 ~L~-lAFN~~iN~GiaL~~PilISiG~l~~iP~NaaiDiL~q~l~~ntl~La~T~iI~i~FiLiiiP~ 278 (290)
T KOG4314|consen 212 GLS-LAFNFLINFGIALLNPILISIGMLCGIPGNAAIDILFQELEFNTLFLAATCIICIGFILIIIPE 278 (290)
T ss_pred HHH-HHHhhheeehhhhhchhhheehheecCcchhHHHHHHHHHHHHHHHHHHHHHHHHhHHheeccc
Confidence 333 2334555667777777766666666666667778666666788889999999999999999887
No 111
>TIGR02865 spore_II_E stage II sporulation protein E. Stage II sporulation protein E (SpoIIE) is a multiple membrane spanning protein with two separable functions. It plays a role in the switch to polar cell division during sporulation. By means of it protein phosphatase activity, located in the C-terminal region, it activates sigma-F. All proteins that score above the trusted cutoff to this model are found in endospore-forming Gram-positive bacteria. Surprisingly, a sequence from the Cyanobacterium-like (and presumably non-spore-forming) photosynthesizer Heliobacillus mobilis is homologous, and scores between the trusted and noise cutoffs.
Probab=61.86 E-value=2.2e+02 Score=30.39 Aligned_cols=44 Identities=20% Similarity=0.276 Sum_probs=31.7
Q ss_pred hHHHHHHhhHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHh
Q 018398 205 GLGSVIIDSQPLSVAVLAALLFGESIGLVGAGGLVLGVIGLLLL 248 (356)
Q Consensus 205 ~~a~~i~~l~pv~~~il~~~~l~e~~~~~~~~g~~l~~~Gv~ll 248 (356)
+.+.++..+.|.-.+.++.+.+.+|.+...+.+.+..++|.+.+
T Consensus 11 gRa~il~~l~PFg~af~~a~~~~~~~~~~~~~~~~~~~~G~~t~ 54 (764)
T TIGR02865 11 GRAVIVSPMAPFGIAFLAAVLLAKKGGDKAFFSALGVLLGAISI 54 (764)
T ss_pred hHHHHhcCCCchHHHHHHHHHHhhcccchHHHHHHHHHHHHHHh
Confidence 56678889999999999988877775444555555566665544
No 112
>KOG2322 consensus N-methyl-D-aspartate receptor glutamate-binding subunit [Signal transduction mechanisms]
Probab=57.18 E-value=1.3e+02 Score=26.79 Aligned_cols=34 Identities=12% Similarity=-0.174 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHHHHHHHHHH-hhhccCCChHHHHH
Q 018398 263 SGEWWMLLAAQSMAVGTVMV-RWVSKYSDPVMATG 296 (356)
Q Consensus 263 ~G~llaLlaa~~~a~~~v~~-r~~~~~~~~~~~~~ 296 (356)
.-.+.+.++|+.+..|.++- .-+.++.+|.+..+
T Consensus 195 ~~~vya~lgAllf~~yl~~Dtqllm~~~SPEEYI~ 229 (237)
T KOG2322|consen 195 LVMVYAALGALLFCGYLVYDTQLLMGRISPEEYIF 229 (237)
T ss_pred HHHHHHHHHHHHHhHHHHhhhHHHhccCCHHHHHH
Confidence 45678888999999998884 45566777777543
No 113
>PF11361 DUF3159: Protein of unknown function (DUF3159); InterPro: IPR016566 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are predicted to be integral membrane proteins (with several transmembrane segments).
Probab=54.24 E-value=83 Score=27.10 Aligned_cols=89 Identities=16% Similarity=0.039 Sum_probs=53.7
Q ss_pred HHHHHHHHHhhccChhHHHHHHhhHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHhhccCCCCCCCchhhHHHHHHH
Q 018398 190 CFQGFLAQGLQRTSAGLGSVIIDSQPLSVAVLAALLFGESIGLVGAGGLVLGVIGLLLLEAPAFDESNSSLWGSGEWWML 269 (356)
Q Consensus 190 ~~~~~~~~al~~~~~~~a~~i~~l~pv~~~il~~~~l~e~~~~~~~~g~~l~~~Gv~ll~~~~~~~~~~~~~~~G~llaL 269 (356)
..-..|+.....+..-..+++....-....+.-.+.-||++... ..|.+...++..+....+ + ..+.+..|.+..+
T Consensus 12 lP~lvF~v~~~~~~~L~~aliaA~~~a~~~~v~RL~r~~~~~~a-~~gl~gV~i~a~~A~~tG-~--A~~~Fl~gi~~n~ 87 (187)
T PF11361_consen 12 LPVLVFVVANAATFGLTPALIAALAVAVVIVVWRLVRRESVQPA-LSGLFGVAISAAIAWRTG-S--AKDFFLPGIWTNA 87 (187)
T ss_pred cChhhhhhHHHhhcchHHHHHHHHHHHHHHHHHHHHhcCccHHH-HHHHHHHHHHHHHHHHHC-C--hhhhhHHHHHHHH
Confidence 33344444444455556667777777777777788888988854 666666666655555533 2 2233455666666
Q ss_pred HHHHHHHHHHHHH
Q 018398 270 LAAQSMAVGTVMV 282 (356)
Q Consensus 270 laa~~~a~~~v~~ 282 (356)
..++.+.+..+..
T Consensus 88 ~~~~~~l~S~lvr 100 (187)
T PF11361_consen 88 VYAVVFLVSVLVR 100 (187)
T ss_pred HHHHHHHHHHHHc
Confidence 6666666655544
No 114
>TIGR00844 c_cpa1 na(+)/h(+) antiporter. This model is specific for the fungal members of this family.
Probab=51.21 E-value=3.4e+02 Score=29.07 Aligned_cols=17 Identities=12% Similarity=0.016 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHHHhhc
Q 018398 234 GAGGLVLGVIGLLLLEA 250 (356)
Q Consensus 234 ~~~g~~l~~~Gv~ll~~ 250 (356)
+-+|+.+.++++.++..
T Consensus 176 DGlAfpfv~LaL~ll~~ 192 (810)
T TIGR00844 176 DGLAFPFVFLSMDLLLY 192 (810)
T ss_pred cHHHHHHHHHHHHHHhc
Confidence 45677777777776654
No 115
>PF04246 RseC_MucC: Positive regulator of sigma(E), RseC/MucC; InterPro: IPR007359 This bacterial family of integral membrane proteins represents a positive regulator of the sigma(E) transcription factor, namely RseC/MucC. The sigma(E) transcription factor is up-regulated by cell envelope protein misfolding, and regulates the expression of genes that are collectively termed ECF (devoted to Extra-Cellular Functions) []. In Pseudomonas aeruginosa, derepression of sigma(E) is associated with the alginate-overproducing phenotype characteristic of chronic respiratory tract colonization in cystic fibrosis patients. The mechanism by which RseC/MucC positively regulates the sigma(E) transcription factor is unknown. RseC is also thought to have a role in thiamine biosynthesis in Salmonella typhimurium []. In addition, this family also includes an N-terminal part of RnfF, a Rhodobacter capsulatus protein, of unknown function, that is essential for nitrogen fixation. This protein also contains a domain found in ApbE protein IPR003374 from INTERPRO, which is itself involved in thiamine biosynthesis.
Probab=49.41 E-value=26 Score=28.18 Aligned_cols=38 Identities=16% Similarity=0.157 Sum_probs=22.9
Q ss_pred cChhHHHHHHhhHHHHHHHHHHHHhCCCCcHHHHHHHHH
Q 018398 202 TSAGLGSVIIDSQPLSVAVLAALLFGESIGLVGAGGLVL 240 (356)
Q Consensus 202 ~~~~~a~~i~~l~pv~~~il~~~~l~e~~~~~~~~g~~l 240 (356)
.....++++.+..|++..+++.+ ++..+...++.+++.
T Consensus 65 ~~~~~aa~l~Y~lPll~li~g~~-l~~~~~~~e~~~~l~ 102 (135)
T PF04246_consen 65 SSLLKAAFLVYLLPLLALIAGAV-LGSYLGGSELWAILG 102 (135)
T ss_pred chHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHH
Confidence 34556788888899988888743 334433334333333
No 116
>COG3169 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=48.80 E-value=1.2e+02 Score=23.13 Aligned_cols=32 Identities=6% Similarity=0.021 Sum_probs=27.3
Q ss_pred HHHHHHHhCCCCcHHHHHHHHHHHHHHHHhhc
Q 018398 219 AVLAALLFGESIGLVGAGGLVLGVIGLLLLEA 250 (356)
Q Consensus 219 ~il~~~~l~e~~~~~~~~g~~l~~~Gv~ll~~ 250 (356)
+.++.+.+||++++..+.|..+...|+.++..
T Consensus 84 v~Fsvfyl~epl~~~~l~a~~~i~gav~fiFr 115 (116)
T COG3169 84 VPFSVFYLKEPLRWNYLWAFLLILGAVYFIFR 115 (116)
T ss_pred HHHHHHHHcCcchHHHHHHHHHHHHHHHHhcc
Confidence 45677889999999999999999999887754
No 117
>COG3086 RseC Positive regulator of sigma E activity [Signal transduction mechanisms]
Probab=48.19 E-value=35 Score=27.94 Aligned_cols=27 Identities=22% Similarity=0.266 Sum_probs=20.2
Q ss_pred hhccChhHHHHHHhhHHHHHHHHHHHH
Q 018398 199 LQRTSAGLGSVIIDSQPLSVAVLAALL 225 (356)
Q Consensus 199 l~~~~~~~a~~i~~l~pv~~~il~~~~ 225 (356)
+.--+.-.++++.++.|++..+++.++
T Consensus 69 i~EkslL~sA~LvYi~PL~~l~v~~~L 95 (150)
T COG3086 69 IEEKSLLKSALLVYIFPLVGLFLGAIL 95 (150)
T ss_pred cCcccHHHHHHHHHHHHHHHHHHHHHH
Confidence 334456678888999999998888654
No 118
>PF00689 Cation_ATPase_C: Cation transporting ATPase, C-terminus; InterPro: IPR006068 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. P-ATPases (sometime known as E1-E2 ATPases) (3.6.3.- from EC) are found in bacteria and in a number of eukaryotic plasma membranes and organelles []. P-ATPases function to transport a variety of different compounds, including ions and phospholipids, across a membrane using ATP hydrolysis for energy. There are many different classes of P-ATPases, each of which transports a specific type of ion: H+, Na+, K+, Mg2+, Ca2+, Ag+ and Ag2+, Zn2+, Co2+, Pb2+, Ni2+, Cd2+, Cu+ and Cu2+. P-ATPases can be composed of one or two polypeptides, and can usually assume two main conformations called E1 and E2. This entry represents the conserved C-terminal region found in several classes of cation-transporting P-type ATPases, including those that transport H+ (3.6.3.6 from EC), Na+ (3.6.3.7 from EC), Ca2+ (3.6.3.8 from EC), Na+/K+ (3.6.3.9 from EC), and H+/K+ (3.6.3.10 from EC). In the H+/K+- and Na+/K+-exchange P-ATPases, this domain is found in the catalytic alpha chain. More information about this protein can be found at Protein of the Month: ATP Synthases [].; PDB: 3A3Y_A 2ZXE_A 2XZB_A 3B9B_A 3N5K_A 3FPS_A 3B9R_A 1WPG_C 2AGV_A 2O9J_A ....
Probab=47.51 E-value=1.7e+02 Score=24.44 Aligned_cols=109 Identities=10% Similarity=-0.035 Sum_probs=60.9
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHh-------CCCC-----CCChHHHHHHHHHHHHHHHHHHHHHHHHhhccChh----
Q 018398 142 AGTFFVAAFRLIPAGLLLITFASSQ-------GRKL-----PSGFNAWVSIFLFALVDASCFQGFLAQGLQRTSAG---- 205 (356)
Q Consensus 142 ~~p~~~~~~r~~~~~l~~~~~~~~~-------~~~~-----~~~~~~~~~~~~~g~~~~~~~~~~~~~al~~~~~~---- 205 (356)
+.|.+++++.++.-.+..+.+..-. +++. -..++.+...+..|+.........++......+..
T Consensus 4 l~~~qiL~inli~d~~~a~al~~e~~~~~im~r~Pr~~~~~l~~~~~~~~i~~~g~~~~~~~~~~f~~~~~~~~~~~~~~ 83 (182)
T PF00689_consen 4 LTPIQILWINLITDLLPALALGFEPPDPDIMKRPPRDPNEPLINKRLLRRILIQGLIMAAACFFAFFLGLYIFGWDEETN 83 (182)
T ss_dssp S-HHHHHHHHHTTTHHHHHHGGGSS-STTGGGS---TTTS-SSSHHHHHHHCCHHHHHHHHHHHHHHHHHHSTCSSSHHH
T ss_pred CcHHHHHHHHHHHHHHHHHHHhcCcchhhhhhccccccchhhccHHhHhHHHHHHHHHHHHHHHHHHHHhhccccccccc
Confidence 5688888888877666555444321 1111 02445677777788887777777777666632211
Q ss_pred -----HHHHHHhhHHHHHHHHHHHHhCC---------CC--cHHHHHHHHHHHHHHHHhhc
Q 018398 206 -----LGSVIIDSQPLSVAVLAALLFGE---------SI--GLVGAGGLVLGVIGLLLLEA 250 (356)
Q Consensus 206 -----~a~~i~~l~pv~~~il~~~~l~e---------~~--~~~~~~g~~l~~~Gv~ll~~ 250 (356)
.+....+..-++.-++-.+..|. ++ ++.-+.+++.+++..+++..
T Consensus 84 ~~~~~~a~T~~F~~lv~~q~~~~~~~r~~~~~~~~~~~~~~N~~l~~~~~~~~~l~~~i~~ 144 (182)
T PF00689_consen 84 NDNLAQAQTMAFTALVLSQLFNAFNCRSRRRSVFRFRGIFSNKWLLIAILISIALQILIVY 144 (182)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHHHHHTSSSSSTCTT-STGGGSHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHhhhcccccccccceecccccccchHHHHHHHHHHHHHHHhc
Confidence 25566666666666655555544 11 34455666666555555544
No 119
>PRK11715 inner membrane protein; Provisional
Probab=47.36 E-value=2.9e+02 Score=27.23 Aligned_cols=22 Identities=9% Similarity=-0.025 Sum_probs=9.8
Q ss_pred CCHHHHHHHHHHHHHHHHHHHH
Q 018398 142 AGTFFVAAFRLIPAGLLLITFA 163 (356)
Q Consensus 142 ~~p~~~~~~r~~~~~l~~~~~~ 163 (356)
+||++-..+-..++...++.+.
T Consensus 329 iHpiQYlLVGlAl~lFYLLLLS 350 (436)
T PRK11715 329 IHPVQYLLVGLALVLFYLLLLS 350 (436)
T ss_pred ecHHHHHHHHHHHHHHHHHHHH
Confidence 4455544444444444333333
No 120
>COG4858 Uncharacterized membrane-bound protein conserved in bacteria [Function unknown]
Probab=46.28 E-value=1.4e+02 Score=25.69 Aligned_cols=102 Identities=10% Similarity=0.046 Sum_probs=49.4
Q ss_pred HHHHHHHHHHHHHHHHHHhhhccCCCHHHHHHHHHHHHHHHHHHHHHHhC--CCCCCChHHHHHHHHHHHHHHHHHHHHH
Q 018398 118 WAVLVSPFFFWGTAMVAMKEVLPKAGTFFVAAFRLIPAGLLLITFASSQG--RKLPSGFNAWVSIFLFALVDASCFQGFL 195 (356)
Q Consensus 118 ~l~ll~aa~~~~~~~~~~k~~~~~~~p~~~~~~r~~~~~l~~~~~~~~~~--~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 195 (356)
.+.+-+.+++-|....+.+.+ ...+-......-.+.++.+.+.+-+..+ ....+ +..+++.++..... ..-+.+.
T Consensus 102 Ll~lg~~aLlsgitaff~~nA-~~~GlItlll~a~vgGfamy~my~y~yr~~ad~sq-r~~~~K~~lv~~~s-m~lWi~v 178 (226)
T COG4858 102 LLFLGAMALLSGITAFFQKNA-QVYGLITLLLTAVVGGFAMYIMYYYAYRMRADNSQ-RPGTWKYLLVAVLS-MLLWIAV 178 (226)
T ss_pred HHHHHHHHHHHHHHHHHhcCC-cchhHHHHHHHHHhhhHHHHHHHHHHHHhhccccc-CCchHHHHHHHHHH-HHHHHHH
Confidence 444555566677777777763 3355555555555555555554443322 21111 23344455444444 3334555
Q ss_pred HHHhhccChhHHHHHHhhHHHHHHHHHHHH
Q 018398 196 AQGLQRTSAGLGSVIIDSQPLSVAVLAALL 225 (356)
Q Consensus 196 ~~al~~~~~~~a~~i~~l~pv~~~il~~~~ 225 (356)
+.+-..+|.+.- -.+.|+...+++.+.
T Consensus 179 ~i~t~~lPtslN---~~L~pi~l~IiGav~ 205 (226)
T COG4858 179 MIATVFLPTSLN---PQLPPIALTIIGAVI 205 (226)
T ss_pred HHHHhhCCCcCC---cCCchHHHHHHHHHH
Confidence 555555554432 223444444444433
No 121
>PF11023 DUF2614: Protein of unknown function (DUF2614); InterPro: IPR020912 This entry describes proteins of unknown function, which are thought to be membrane proteins.; GO: 0005887 integral to plasma membrane
Probab=44.85 E-value=74 Score=24.83 Aligned_cols=25 Identities=20% Similarity=0.259 Sum_probs=20.9
Q ss_pred CCCCcHHHHHHHHHHHHHHHHhhcc
Q 018398 227 GESIGLVGAGGLVLGVIGLLLLEAP 251 (356)
Q Consensus 227 ~e~~~~~~~~g~~l~~~Gv~ll~~~ 251 (356)
..|+++.+-.|..+.++|++++..+
T Consensus 5 ~~KiN~~R~~al~lif~g~~vmy~g 29 (114)
T PF11023_consen 5 SSKINKIRTFALSLIFIGMIVMYIG 29 (114)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHhhh
Confidence 3578889999999999999888763
No 122
>PF07168 Ureide_permease: Ureide permease; InterPro: IPR009834 This entry represents ureide permease, which transports a wide spectrum of oxo derivatives of heterocyclic nitrogen compounds, including allantoin, uric acid and xanthine, but not adenine. Transport is dependent on glucose and a proton gradient [].
Probab=43.90 E-value=4.1 Score=37.54 Aligned_cols=123 Identities=12% Similarity=0.061 Sum_probs=75.0
Q ss_pred HHHHHHHHHHHHHHhhhccCCCHHHHHHHHHHHHHHHHHHHHHHh----CC---CCC-------C-ChHHHHHHHHHHHH
Q 018398 122 VSPFFFWGTAMVAMKEVLPKAGTFFVAAFRLIPAGLLLITFASSQ----GR---KLP-------S-GFNAWVSIFLFALV 186 (356)
Q Consensus 122 l~aa~~~~~~~~~~k~~~~~~~p~~~~~~r~~~~~l~~~~~~~~~----~~---~~~-------~-~~~~~~~~~~~g~~ 186 (356)
+++.+|||+.....|++.++---.+...+-|.++.++...+.... ++ ..| + .+..... .+.|.+
T Consensus 2 ~itmlcwGSW~nt~kL~~r~gR~~qh~Y~DYsig~lL~All~A~TlGs~G~~~~~g~~Fl~qL~Q~n~~sv~~-A~aGGv 80 (336)
T PF07168_consen 2 VITMLCWGSWPNTQKLAERRGRLPQHFYWDYSIGNLLAALLIAFTLGSIGESTPEGPNFLTQLSQANWPSVLF-AMAGGV 80 (336)
T ss_pred eeehhhhcChHHHHHHHHhcCCccceehhHHHHHHHHHHHHHHHhccccCCCCCCCccHHHHHhcCChHHHHH-HHHhhH
Confidence 467789999999999987654434457777877776665555332 11 011 1 2223333 334444
Q ss_pred HHHHHHHHHHHHhhccChhHHHHH-HhhHHHHHHHHHHHHhCCCCcHHH--HHHHHHHHHHHH
Q 018398 187 DASCFQGFLAQGLQRTSAGLGSVI-IDSQPLSVAVLAALLFGESIGLVG--AGGLVLGVIGLL 246 (356)
Q Consensus 187 ~~~~~~~~~~~al~~~~~~~a~~i-~~l~pv~~~il~~~~l~e~~~~~~--~~g~~l~~~Gv~ 246 (356)
...+++++..+|+...+.+.+-.+ ..+.-++.+++-+ |+..|.++.. ..|+.+.++.++
T Consensus 81 vfnlgNillq~aia~aGmSVafpvg~glalVlGv~~NY-fld~~~n~a~iLF~GV~cf~iAI~ 142 (336)
T PF07168_consen 81 VFNLGNILLQAAIAFAGMSVAFPVGIGLALVLGVTLNY-FLDPKINRAEILFPGVACFLIAII 142 (336)
T ss_pred hhhhHHHHHHHHHHHhcceeeeeeecceEEEEeeeeee-eccCCCCCceEEEccHHHHHHHHH
Confidence 457788899999999888888766 5566666666664 4566666433 234444444433
No 123
>PF05653 Mg_trans_NIPA: Magnesium transporter NIPA; InterPro: IPR008521 This family consists of several eukaryotic proteins of unknown function.
Probab=42.55 E-value=1e+02 Score=28.65 Aligned_cols=64 Identities=22% Similarity=0.266 Sum_probs=46.7
Q ss_pred HHHHHHHHHHhhccChhHHHHH-HhhHHHHHHHHHHHHhCC--CCcHHH----HHHHHHHHHHHHHhhccC
Q 018398 189 SCFQGFLAQGLQRTSAGLGSVI-IDSQPLSVAVLAALLFGE--SIGLVG----AGGLVLGVIGLLLLEAPA 252 (356)
Q Consensus 189 ~~~~~~~~~al~~~~~~~a~~i-~~l~pv~~~il~~~~l~e--~~~~~~----~~g~~l~~~Gv~ll~~~~ 252 (356)
.....+...|+++-+++....+ .......+.+-+.++++| +.+..+ ..|.++.+.|+.++....
T Consensus 224 ~~Q~~~LN~aL~~fd~~~V~P~~~v~~t~~~i~~g~i~f~e~~~~~~~~~~~~~~G~~~ii~GV~lL~~~~ 294 (300)
T PF05653_consen 224 VLQLYYLNKALKRFDTSLVVPVYYVFFTLSSIIGGAIFFQEFSRMTAWQIIGFLCGFLIIIIGVFLLSSSK 294 (300)
T ss_pred HHHHHHHHHHHHhccceEEEeehhHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHHhhheeeccC
Confidence 4455566789999998888744 666677788888888886 455544 556777888888887644
No 124
>PF06123 CreD: Inner membrane protein CreD; InterPro: IPR010364 This family consists of several bacterial CreD or Cet inner membrane proteins. Dominant mutations of the cet gene of Escherichia coli result in tolerance to colicin E2 and increased amounts of an inner membrane protein with a Mr of 42,000. The cet gene is shown to be in the same operon as the phoM gene, which is required in a phoR background for expression of the structural gene for alkaline phosphatase, phoA. Although the Cet protein is not required for phoA expression, it has been suggested that the Cet protein has an enhancing effect on the transcription of phoA [].
Probab=41.39 E-value=3.6e+02 Score=26.56 Aligned_cols=24 Identities=8% Similarity=-0.002 Sum_probs=13.9
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHH
Q 018398 141 KAGTFFVAAFRLIPAGLLLITFAS 164 (356)
Q Consensus 141 ~~~p~~~~~~r~~~~~l~~~~~~~ 164 (356)
.+||++-..+-..++...++.+.+
T Consensus 322 ~iHpiQY~LVGlAl~lFYlLLLSl 345 (430)
T PF06123_consen 322 RIHPIQYLLVGLALVLFYLLLLSL 345 (430)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHH
Confidence 466777666666555555544443
No 125
>PRK10263 DNA translocase FtsK; Provisional
Probab=40.42 E-value=2.6e+02 Score=31.63 Aligned_cols=15 Identities=7% Similarity=0.045 Sum_probs=7.3
Q ss_pred HHHHHHHHHHHHhCC
Q 018398 214 QPLSVAVLAALLFGE 228 (356)
Q Consensus 214 ~pv~~~il~~~~l~e 228 (356)
.|++..+.++++++.
T Consensus 86 LP~LL~~~a~~l~R~ 100 (1355)
T PRK10263 86 IPVIIVGGCWFAWRH 100 (1355)
T ss_pred HHHHHHHHHHHHHhc
Confidence 444444555555443
No 126
>PF13536 EmrE: Multidrug resistance efflux transporter
Probab=40.10 E-value=49 Score=25.48 Aligned_cols=26 Identities=23% Similarity=0.572 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhccC
Q 018398 330 ILALLYTSIFGSAISYGVYFYSATKG 355 (356)
Q Consensus 330 ~~~~~~lgi~~s~l~~~l~~~al~~~ 355 (356)
|...+..|+++..+++.+|+++++..
T Consensus 34 ~~~~~~~g~~~~~~~~~~~~~a~~~~ 59 (113)
T PF13536_consen 34 WLWLILAGLLGFGVAYLLFFYALSYA 59 (113)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 33444445445555666666665543
No 127
>COG4956 Integral membrane protein (PIN domain superfamily) [General function prediction only]
Probab=38.48 E-value=3.4e+02 Score=25.44 Aligned_cols=61 Identities=16% Similarity=0.148 Sum_probs=31.8
Q ss_pred cCCChHHHHHHHHHHHHHHHHHHHHhhcCCCCCcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Q 018398 287 KYSDPVMATGWHMVIGGLPLMVISVLNHDPVYGESVKELTSSDILALLYTSIFGSAISYGVYFYSATKG 355 (356)
Q Consensus 287 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lgi~~s~l~~~l~~~al~~~ 355 (356)
++.++.+++ +..+|.++.++++.+...+... .+.+ ..-. +.--++.-.++|+.+.++.+|.
T Consensus 74 ~k~~~~~il--f~tiGLiiGLlia~l~~~pL~~---~~ip--~~~~-ii~vi~t~il~y~G~~~~~k~~ 134 (356)
T COG4956 74 RKLPVTTIL--FGTIGLIIGLLIAVLLSSPLFL---LPIP--FIST-IIPVILTIILAYFGFQLADKKR 134 (356)
T ss_pred HhcCHHHHH--HHHHHHHHHHHHHHHHhhHHhh---CCcc--HHHh-HHHHHHHHHHHHHhhHHhhhhh
Confidence 345666654 3445566666665554433210 1122 1112 2222355678888889998875
No 128
>PRK10862 SoxR reducing system protein RseC; Provisional
Probab=37.83 E-value=41 Score=27.93 Aligned_cols=27 Identities=22% Similarity=0.214 Sum_probs=18.3
Q ss_pred hhccChhHHHHHHhhHHHHHHHHHHHH
Q 018398 199 LQRTSAGLGSVIIDSQPLSVAVLAALL 225 (356)
Q Consensus 199 l~~~~~~~a~~i~~l~pv~~~il~~~~ 225 (356)
+..-....++++.|+.|++..+++.++
T Consensus 69 i~e~~llkaa~lvYllPLl~li~ga~l 95 (154)
T PRK10862 69 IAEGSLLRSALLVYMTPLVGLFLGAAL 95 (154)
T ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 334445567788888898887777443
No 129
>PF06123 CreD: Inner membrane protein CreD; InterPro: IPR010364 This family consists of several bacterial CreD or Cet inner membrane proteins. Dominant mutations of the cet gene of Escherichia coli result in tolerance to colicin E2 and increased amounts of an inner membrane protein with a Mr of 42,000. The cet gene is shown to be in the same operon as the phoM gene, which is required in a phoR background for expression of the structural gene for alkaline phosphatase, phoA. Although the Cet protein is not required for phoA expression, it has been suggested that the Cet protein has an enhancing effect on the transcription of phoA [].
Probab=36.85 E-value=4.2e+02 Score=26.07 Aligned_cols=57 Identities=25% Similarity=0.198 Sum_probs=31.0
Q ss_pred HHhCCCCcHHHH--HHHHHHHHHHHHhhccCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHhhhcc
Q 018398 224 LLFGESIGLVGA--GGLVLGVIGLLLLEAPAFDESNSSLWGSGEWWMLLAAQSMAVGTVMVRWVSK 287 (356)
Q Consensus 224 ~~l~e~~~~~~~--~g~~l~~~Gv~ll~~~~~~~~~~~~~~~G~llaLlaa~~~a~~~v~~r~~~~ 287 (356)
++-|.|+.+.|. +|+++++.=+.++...+ ...++....+.++.|-++-..+.+.+.+
T Consensus 317 ~~~~~~iHpiQY~LVGlAl~lFYlLLLSlSE-------hi~F~~AYliAa~a~i~Li~~Y~~~vl~ 375 (430)
T PF06123_consen 317 LLSKLRIHPIQYLLVGLALVLFYLLLLSLSE-------HIGFNLAYLIAALACIGLISLYLSSVLK 375 (430)
T ss_pred HHhcCcccHHHHHHHHHHHHHHHHHHHHHHh-------hhchHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 445677777774 45555555445555433 2223445555566666666666655544
No 130
>COG3238 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=34.97 E-value=2.6e+02 Score=23.12 Aligned_cols=53 Identities=13% Similarity=0.334 Sum_probs=42.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhccCCC-hHHHHHHHHHHHHHHHHHHHHhhcC
Q 018398 263 SGEWWMLLAAQSMAVGTVMVRWVSKYSD-PVMATGWHMVIGGLPLMVISVLNHD 315 (356)
Q Consensus 263 ~G~llaLlaa~~~a~~~v~~r~~~~~~~-~~~~~~~~~~~~~i~~~~~~~~~~~ 315 (356)
...+++++++++-.+..-+.-++.+..+ |.......+.+|.+.+..+.++.++
T Consensus 5 l~ll~~i~aG~~l~~Q~~iN~qL~~~~~spl~As~isf~vGt~~L~~l~l~~~~ 58 (150)
T COG3238 5 LYLLFAILAGALLPLQAAINGRLARYLGSPLLASLISFLVGTVLLLILLLIKQG 58 (150)
T ss_pred HHHHHHHHHhhhhhhHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 4567888999999999888888777665 8888888888888888887777443
No 131
>PF12811 BaxI_1: Bax inhibitor 1 like ; InterPro: IPR010539 Bax inhibitor-1 (BI1) family contains six known genes in human. Some members of BI1 family have been proved to play important roles in cell death [, ].
Probab=34.36 E-value=3.7e+02 Score=24.68 Aligned_cols=42 Identities=10% Similarity=-0.076 Sum_probs=21.8
Q ss_pred HHHHhhHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHhh
Q 018398 208 SVIIDSQPLSVAVLAALLFGESIGLVGAGGLVLGVIGLLLLE 249 (356)
Q Consensus 208 ~~i~~l~pv~~~il~~~~l~e~~~~~~~~g~~l~~~Gv~ll~ 249 (356)
+++......+++++.+-...-|.+.+---.+..+..|++++.
T Consensus 150 Avl~T~~vf~~ml~lYk~g~IrvT~kf~~iv~~a~~gi~~~~ 191 (274)
T PF12811_consen 150 AVLGTFGVFAVMLALYKTGIIRVTPKFRRIVMIATFGIALFY 191 (274)
T ss_pred HHHHHHHHHHHHHHHHHhCCeeechHHHHHHHHHHHHHHHHH
Confidence 344444455555555544444666655555555555555444
No 132
>TIGR01299 synapt_SV2 synaptic vesicle protein SV2. This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices.
Probab=33.59 E-value=6.1e+02 Score=26.95 Aligned_cols=22 Identities=18% Similarity=0.285 Sum_probs=12.9
Q ss_pred hCCCCcHHHHHHHHHHHHHHHH
Q 018398 226 FGESIGLVGAGGLVLGVIGLLL 247 (356)
Q Consensus 226 l~e~~~~~~~~g~~l~~~Gv~l 247 (356)
+-+|++++..+-+.+++.++..
T Consensus 225 LsDR~GRR~~lii~lil~~i~~ 246 (742)
T TIGR01299 225 LADKLGRKQCLLICLSVNGFFA 246 (742)
T ss_pred HHHHhCcHHHHHHHHHHHHHHH
Confidence 3578887776655554444433
No 133
>PRK10209 acid-resistance membrane protein; Provisional
Probab=33.31 E-value=3.1e+02 Score=23.46 Aligned_cols=78 Identities=12% Similarity=-0.009 Sum_probs=39.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhccChhH--HHHHHhhHHHHHHHHHHHHhCCCCcHHH----HHHHHHHHHHHHH
Q 018398 174 FNAWVSIFLFALVDASCFQGFLAQGLQRTSAGL--GSVIIDSQPLSVAVLAALLFGESIGLVG----AGGLVLGVIGLLL 247 (356)
Q Consensus 174 ~~~~~~~~~~g~~~~~~~~~~~~~al~~~~~~~--a~~i~~l~pv~~~il~~~~l~e~~~~~~----~~g~~l~~~Gv~l 247 (356)
++.|++..+.|++....+..+.+.-...+-... ........=++..+ ..+-.+++-.+.. ..|++..++|+.+
T Consensus 18 ~~~~~~~li~Gil~ivlGi~~l~~P~~~~~~~~~~~g~~ll~~Gi~~l~-~~~~~~~~~~~~~~~~ll~Gil~ii~Gil~ 96 (190)
T PRK10209 18 KKQRRAIQIIAVLLFIGGLLCLSFPFVSGDALSTVVGILLICSGIALIV-GLFANRSHNFWPMLSGILLGVAYLVLGYFF 96 (190)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHccccchHHHHHHHHHHHHHHHHHHHH
Confidence 466777788888877776655544332111110 11112222222222 2222333322221 3588888999999
Q ss_pred hhccC
Q 018398 248 LEAPA 252 (356)
Q Consensus 248 l~~~~ 252 (356)
+..|.
T Consensus 97 l~~P~ 101 (190)
T PRK10209 97 IRNPE 101 (190)
T ss_pred HHhHH
Confidence 88765
No 134
>PF11139 DUF2910: Protein of unknown function (DUF2910); InterPro: IPR021315 Some members in this bacterial family annotate the proteins as cytochrome C biogenesis proteins however this cannot be confirmed. Currently no function for this family is known.
Probab=31.62 E-value=3.5e+02 Score=23.49 Aligned_cols=40 Identities=30% Similarity=0.335 Sum_probs=28.6
Q ss_pred HHhhHHHHHHHHHHHHhCCCC-------------cHHHHHHHHHHHHHHHHhh
Q 018398 210 IIDSQPLSVAVLAALLFGESI-------------GLVGAGGLVLGVIGLLLLE 249 (356)
Q Consensus 210 i~~l~pv~~~il~~~~l~e~~-------------~~~~~~g~~l~~~Gv~ll~ 249 (356)
+....|+..+++.+.+.+||. +.++..+.++.++|+.++.
T Consensus 158 ~i~~~~~~~pll~~~~~~~r~~~~l~r~~~wl~~~~~~i~~~i~~i~G~~l~~ 210 (214)
T PF11139_consen 158 LIASLPALLPLLAYLVAPERAEPWLERLRSWLRRHSRQILAVILLIVGALLLG 210 (214)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHH
Confidence 356778888888888888776 2344667777777776664
No 135
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=31.38 E-value=65 Score=27.48 Aligned_cols=18 Identities=22% Similarity=0.134 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHHhhccC
Q 018398 235 AGGLVLGVIGLLLLEAPA 252 (356)
Q Consensus 235 ~~g~~l~~~Gv~ll~~~~ 252 (356)
++|+++++.|++.++...
T Consensus 13 ilgilli~~gI~~Lv~~~ 30 (191)
T PF04156_consen 13 ILGILLIASGIAALVLFI 30 (191)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 456666666666655543
No 136
>PRK10263 DNA translocase FtsK; Provisional
Probab=30.86 E-value=7e+02 Score=28.43 Aligned_cols=6 Identities=17% Similarity=0.207 Sum_probs=2.5
Q ss_pred HHHHHH
Q 018398 235 AGGLVL 240 (356)
Q Consensus 235 ~~g~~l 240 (356)
++|+++
T Consensus 116 liGlLL 121 (1355)
T PRK10263 116 IIGVLA 121 (1355)
T ss_pred HHHHHH
Confidence 344433
No 137
>COG5373 Predicted membrane protein [Function unknown]
Probab=29.40 E-value=7.4e+02 Score=26.61 Aligned_cols=96 Identities=13% Similarity=-0.045 Sum_probs=49.4
Q ss_pred HHHHhhhccC--CCHHHHHHHHHHHHHHHHHHHHHHhCCCCCCChHHH----HHHHHHHHHHHHHHHHHHHHHhhccChh
Q 018398 132 MVAMKEVLPK--AGTFFVAAFRLIPAGLLLITFASSQGRKLPSGFNAW----VSIFLFALVDASCFQGFLAQGLQRTSAG 205 (356)
Q Consensus 132 ~~~~k~~~~~--~~p~~~~~~r~~~~~l~~~~~~~~~~~~~~~~~~~~----~~~~~~g~~~~~~~~~~~~~al~~~~~~ 205 (356)
.++.|+..+. ++|..-...--+.+.++...-.+.|++..+.+.... ..+-..|.+..+...+.-+.=+.+.+++
T Consensus 148 ~FLlkY~~E~gl~~p~vRl~~aAv~~lvL~~~Ge~lRr~~~~~~~~~y~~aP~vLtgaGa~~Lf~tvyAA~~iyd~i~pg 227 (931)
T COG5373 148 AFLLKYAIEAGLFGPEVRLAGAAVLGLVLVAGGEWLRRKGFPVPRQGYANAPAVLTGAGALVLFGTVYAAYGIYDLIGPG 227 (931)
T ss_pred HHHHHHHHHcCCCChhHHHHHHHHHHHHHHHhHHHHHhccCccccccccCCchhhcccchHHHHHHHHHHhcccccCChh
Confidence 4477887775 666543333333333333333334444443322111 1122223332222222333445668999
Q ss_pred HHHHHHhhHHHHHHHHHHHHhCC
Q 018398 206 LGSVIIDSQPLSVAVLAALLFGE 228 (356)
Q Consensus 206 ~a~~i~~l~pv~~~il~~~~l~e 228 (356)
.+-.+..+..+.++.++ ++-+.
T Consensus 228 aAf~LL~lIs~~t~~LA-llqg~ 249 (931)
T COG5373 228 AAFALLVLISLATIGLA-LLQGA 249 (931)
T ss_pred HHHHHHHHHHHHHHHHH-HHcch
Confidence 99999999999999888 44443
No 138
>TIGR02611 conserved hypothetical protein TIGR02611. Members of this family are Actinobacterial putative proteins of about 150 amino acids in length with three apparent transmembrane helix and an unusual motif with consensus sequence PGPGW.
Probab=29.38 E-value=1.7e+02 Score=23.21 Aligned_cols=44 Identities=16% Similarity=0.280 Sum_probs=32.9
Q ss_pred HHHHHHHHHHHHHHHhhccCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHhhhc
Q 018398 233 VGAGGLVLGVIGLLLLEAPAFDESNSSLWGSGEWWMLLAAQSMAVGTVMVRWVS 286 (356)
Q Consensus 233 ~~~~g~~l~~~Gv~ll~~~~~~~~~~~~~~~G~llaLlaa~~~a~~~v~~r~~~ 286 (356)
..++|.++.++|++++..|+ .|.+..+++-...+.-....|+..
T Consensus 28 v~v~G~~~~~~Gi~ml~lPG----------pG~l~i~iGl~iLatEf~WA~r~L 71 (121)
T TIGR02611 28 VLVVGWVVLIVGIITIPLPG----------PGWLTIFIGLAILSLEFVWAQRLL 71 (121)
T ss_pred HHHHHHHHHHHHHHHhccCC----------chHHHHHHHHHHHHHhhHHHHHHH
Confidence 34778889999999998877 266777777777777777766543
No 139
>PRK12585 putative monovalent cation/H+ antiporter subunit G; Reviewed
Probab=29.23 E-value=2.9e+02 Score=23.89 Aligned_cols=18 Identities=22% Similarity=0.036 Sum_probs=9.2
Q ss_pred HHHHHHHHHHHHHHHhhc
Q 018398 233 VGAGGLVLGVIGLLLLEA 250 (356)
Q Consensus 233 ~~~~g~~l~~~Gv~ll~~ 250 (356)
..+++.++.++|++++..
T Consensus 5 ~eiI~~vLLliG~~f~li 22 (197)
T PRK12585 5 IEIIISIMILIGGLLSIL 22 (197)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 345555555555554444
No 140
>TIGR00927 2A1904 K+-dependent Na+/Ca+ exchanger.
Probab=28.55 E-value=8.3e+02 Score=26.92 Aligned_cols=11 Identities=18% Similarity=0.619 Sum_probs=5.5
Q ss_pred cccccccccCC
Q 018398 54 KKRCIIVTNCT 64 (356)
Q Consensus 54 ~~~~~~~~~~~ 64 (356)
..+|.++++.+
T Consensus 393 ~~~~~~~~~~~ 403 (1096)
T TIGR00927 393 VHHCVVVKPAP 403 (1096)
T ss_pred EEEEEEecCcC
Confidence 34555555543
No 141
>PF10754 DUF2569: Protein of unknown function (DUF2569); InterPro: IPR019690 This entry represents a protein that is conserved in bacteria. The function is not known, but several members are annotated as being YdgK or a homologue thereof and associated to the inner membrane. This signature also matches proteins that are described as transglutaminase-like enzymes, although this could not be confirmed.
Probab=28.14 E-value=3.3e+02 Score=22.22 Aligned_cols=27 Identities=15% Similarity=-0.136 Sum_probs=23.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhhhcc
Q 018398 261 WGSGEWWMLLAAQSMAVGTVMVRWVSK 287 (356)
Q Consensus 261 ~~~G~llaLlaa~~~a~~~v~~r~~~~ 287 (356)
.....+..+++++.|.-|...+||+++
T Consensus 119 ~i~~l~~~li~a~IwipYf~~S~RVK~ 145 (149)
T PF10754_consen 119 AIRELLRSLIAAAIWIPYFLRSKRVKN 145 (149)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHhhh
Confidence 345788999999999999999999864
No 142
>TIGR03144 cytochr_II_ccsB cytochrome c-type biogenesis protein CcsB. Members of this protein family represent one of two essential proteins of system II for c-type cytochrome biogenesis. Additional proteins tend to be part of the system but can be replaced by chemical reductants such as dithiothreitol. This protein is designated CcsB in Bordetella pertussis and some other bacteria, resC in Bacillus (where there is additional N-terminal sequence), and CcsA in chloroplast. We use the CcsB designation here. Member sequences show regions of strong sequence conservation and variable-length, poorly conserved regions in between; sparsely filled columns were removed from the seed alignment prior to model construction.
Probab=27.05 E-value=4.5e+02 Score=23.39 Aligned_cols=24 Identities=8% Similarity=-0.157 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhc
Q 018398 263 SGEWWMLLAAQSMAVGTVMVRWVS 286 (356)
Q Consensus 263 ~G~llaLlaa~~~a~~~v~~r~~~ 286 (356)
.|+....++++.-.+|.+..|+.+
T Consensus 102 l~ya~~~la~~~a~lyL~~~~~lk 125 (243)
T TIGR03144 102 LSYAALLVGSLLSIAYLLKTRKQN 125 (243)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhh
Confidence 566666666655555666555543
No 143
>COG1030 NfeD Membrane-bound serine protease (ClpP class) [Posttranslational modification, protein turnover, chaperones]
Probab=26.14 E-value=6.4e+02 Score=24.83 Aligned_cols=66 Identities=21% Similarity=0.292 Sum_probs=44.8
Q ss_pred HHHHHHHHHHHHHHHhhccChhHHHHHHhhHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHhhccC
Q 018398 184 ALVDASCFQGFLAQGLQRTSAGLGSVIIDSQPLSVAVLAALLFGESIGLVGAGGLVLGVIGLLLLEAPA 252 (356)
Q Consensus 184 g~~~~~~~~~~~~~al~~~~~~~a~~i~~l~pv~~~il~~~~l~e~~~~~~~~g~~l~~~Gv~ll~~~~ 252 (356)
|.++ .....+.++++...+...+.++..+.-+.-+++..+. -......+.|++..++|..++....
T Consensus 261 g~iG-~i~LlL~f~g~~~~~~~~~gllLiilG~iLiv~E~~~--p~fGvigl~Gii~~iiG~~~L~~~~ 326 (436)
T COG1030 261 GIIG-AILLLLGFYGLLFLGINWAGLLLIILGAILIVAEAFV--PGFGVIGLLGIILFIIGLLLLFPSG 326 (436)
T ss_pred HHHH-HHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHHhc--ccchHHHHHHHHHHHHhhhhccCCC
Confidence 3444 4456777888888888887777665555555555322 2235777888888899988887655
No 144
>PRK10631 p-hydroxybenzoic acid efflux subunit AaeB; Provisional
Probab=26.01 E-value=7.8e+02 Score=25.76 Aligned_cols=43 Identities=9% Similarity=-0.035 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhccChhHHHHHHhhHHHH
Q 018398 175 NAWVSIFLFALVDASCFQGFLAQGLQRTSAGLGSVIIDSQPLS 217 (356)
Q Consensus 175 ~~~~~~~~~g~~~~~~~~~~~~~al~~~~~~~a~~i~~l~pv~ 217 (356)
+....++.-.+++...+..+.+.=+-++.-+...+...+.|++
T Consensus 400 ~~~~~fl~Gtl~a~~~a~l~~f~vLP~i~~~f~lL~laLap~~ 442 (652)
T PRK10631 400 MVAIDFLYGTLAALPLGALYFMVIIPNTQQSMLLLCISLGVLG 442 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHH
Confidence 3344444444444444544445555554434444555556655
No 145
>KOG3817 consensus Uncharacterized conserved protein [Function unknown]
Probab=25.95 E-value=4.7e+02 Score=25.03 Aligned_cols=79 Identities=10% Similarity=0.174 Sum_probs=38.8
Q ss_pred HHHHHHHHhhhccCCCHHHHHHHHHHHHHHHHHH-----HHHHhCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 018398 128 WGTAMVAMKEVLPKAGTFFVAAFRLIPAGLLLIT-----FASSQGRKLPSGFNAWVSIFLFALVDASCFQGFLAQGLQRT 202 (356)
Q Consensus 128 ~~~~~~~~k~~~~~~~p~~~~~~r~~~~~l~~~~-----~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~al~~~ 202 (356)
|..+.-+.|.+.+++--.......++++-++... ++++.+.. ...+.+-...+.+- .++..+.|.+.++.
T Consensus 201 Ws~slY~i~ql~~nLq~Iwieyr~yvLgYvlivgliSfaVCYK~GPp-~d~RS~~ilmWtLq----li~lvl~Yfsvq~p 275 (452)
T KOG3817|consen 201 WSISLYVIKQLADNLQLIWIEYRDYVLGYVLIVGLISFAVCYKIGPP-KDPRSQTILMWTLQ----LIGLVLAYFSVQHP 275 (452)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCC-CCcchhhHHHHHHH----HHHHHHHHHhcccH
Confidence 4555555555555555556666666655544333 33333322 22222222222222 22345556788888
Q ss_pred ChhHHHHHH
Q 018398 203 SAGLGSVII 211 (356)
Q Consensus 203 ~~~~a~~i~ 211 (356)
.++.|.+|.
T Consensus 276 ~~a~A~iI~ 284 (452)
T KOG3817|consen 276 SAAIAAIIM 284 (452)
T ss_pred HHHHHHHHH
Confidence 877766554
No 146
>PF02656 DUF202: Domain of unknown function (DUF202); InterPro: IPR003807 This entry describes proteins of unknown function.
Probab=24.38 E-value=2.5e+02 Score=19.55 Aligned_cols=23 Identities=17% Similarity=0.128 Sum_probs=12.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHh
Q 018398 261 WGSGEWWMLLAAQSMAVGTVMVR 283 (356)
Q Consensus 261 ~~~G~llaLlaa~~~a~~~v~~r 283 (356)
...|.++..++.+.......-.+
T Consensus 46 ~~~~~~~~~~~~~~~~~~~~ry~ 68 (73)
T PF02656_consen 46 KVLGLLLIVLGLLTLIYGIYRYR 68 (73)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566666666665555544433
No 147
>COG4452 CreD Inner membrane protein involved in colicin E2 resistance [Defense mechanisms]
Probab=24.31 E-value=6.6e+02 Score=24.32 Aligned_cols=38 Identities=13% Similarity=-0.019 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhccChhHHHHHHhh
Q 018398 175 NAWVSIFLFALVDASCFQGFLAQGLQRTSAGLGSVIIDS 213 (356)
Q Consensus 175 ~~~~~~~~~g~~~~~~~~~~~~~al~~~~~~~a~~i~~l 213 (356)
-++..+.+.|+-- ++.|.+..-=-.|++-.-|-++.++
T Consensus 323 ~Hp~QY~LVGlsL-v~FYLLLLaLsEHiGFt~Ayl~aSl 360 (443)
T COG4452 323 LHPMQYLLVGLSL-VMFYLLLLALSEHIGFTVAYLIASL 360 (443)
T ss_pred cchHHHHHHHHHH-HHHHHHHHHHHhhcCcCHHHHHHHH
Confidence 4455556666554 3333333222345555555555433
No 148
>PF11177 DUF2964: Protein of unknown function (DUF2964); InterPro: IPR021347 This family of proteins with unknown function appears to be restricted to Proteobacteria.
Probab=23.72 E-value=2.6e+02 Score=19.40 Aligned_cols=45 Identities=29% Similarity=0.392 Sum_probs=30.8
Q ss_pred HHHHhhHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHhhccC
Q 018398 208 SVIIDSQPLSVAVLAALLFGESIGLVGAGGLVLGVIGLLLLEAPA 252 (356)
Q Consensus 208 ~~i~~l~pv~~~il~~~~l~e~~~~~~~~g~~l~~~Gv~ll~~~~ 252 (356)
+++..+.-+..++=+.++-+++.-+..+++++.++++-+++..|.
T Consensus 14 avFiaLagl~~~I~GlLfD~~~~~~yg~~al~~Gv~~fV~~Lnp~ 58 (62)
T PF11177_consen 14 AVFIALAGLAAVIHGLLFDEERVFRYGVIALVVGVAGFVVMLNPA 58 (62)
T ss_pred HHHHHHHHHHHHhhhhhccccchhHHHHHHHHHHHHHHHHhCCCC
Confidence 344455556666666566567888888888888888877776654
No 149
>PF07331 TctB: Tripartite tricarboxylate transporter TctB family; InterPro: IPR009936 This entry contains bacterial proteins of around 150 residues in length, which have 4 transmembrane domains. Some of the sequences in the entry are annotated as the TctB subunit of the tripartite tricarboxylate transport(TTT) family. However there is no direct evidence to support this annotation as characterised members of this family are not associated with the entry.
Probab=22.98 E-value=3.8e+02 Score=21.15 Aligned_cols=30 Identities=20% Similarity=0.136 Sum_probs=13.7
Q ss_pred HHHHHHhhccChhHHHHHHhhHHHHHHHHHHHHhCCC
Q 018398 193 GFLAQGLQRTSAGLGSVIIDSQPLSVAVLAALLFGES 229 (356)
Q Consensus 193 ~~~~~al~~~~~~~a~~i~~l~pv~~~il~~~~l~e~ 229 (356)
..|..++++.+--.++ .++..++. .+++||
T Consensus 83 ~~y~~~~~~lGf~~at------~~~~~~~~-~~~g~r 112 (141)
T PF07331_consen 83 VLYVLLLEYLGFIIAT------FLFLFAFM-LLLGER 112 (141)
T ss_pred HHHHHHHHHhhHHHHH------HHHHHHHH-HHhCCC
Confidence 3444555554433333 23333444 455666
No 150
>PF07444 Ycf66_N: Ycf66 protein N-terminus; InterPro: IPR010004 This entry represents Ycf66, a protein that is restricted to the chloroplasts of simple plants and algae. It is also found in the cyanobacteria. The function is unknown. As the family is exclusively found in phototrophic organisms it may play a role in photosynthesis.
Probab=22.20 E-value=3.3e+02 Score=20.12 Aligned_cols=13 Identities=15% Similarity=-0.043 Sum_probs=5.9
Q ss_pred HHHHHHHHHHHHH
Q 018398 263 SGEWWMLLAAQSM 275 (356)
Q Consensus 263 ~G~llaLlaa~~~ 275 (356)
.|..+++.+...|
T Consensus 11 Lgi~l~~~~~~Ly 23 (84)
T PF07444_consen 11 LGIILILGGLALY 23 (84)
T ss_pred HHHHHHHHHHHHH
Confidence 4444444444444
No 151
>PF04973 NMN_transporter: Nicotinamide mononucleotide transporter; InterPro: IPR006419 The PnuC protein of Escherichia coli is membrane protein responsible for nicotinamide mononucleotide transport, subject to regulation by interaction with the NadR (also called NadI) protein (see IPR006417 from INTERPRO). The extreme N- and C-terminal regions are poorly conserved. ; GO: 0006810 transport, 0016020 membrane
Probab=22.07 E-value=4.8e+02 Score=21.94 Aligned_cols=44 Identities=9% Similarity=-0.053 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHHHHHhhccCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHhh
Q 018398 232 LVGAGGLVLGVIGLLLLEAPAFDESNSSLWGSGEWWMLLAAQSMAVGTVMVRW 284 (356)
Q Consensus 232 ~~~~~g~~l~~~Gv~ll~~~~~~~~~~~~~~~G~llaLlaa~~~a~~~v~~r~ 284 (356)
+.++++.+++++++.+..... ..+..+++++++.|+......+.
T Consensus 2 ~~~~~~~i~g~l~v~l~~k~~---------~~~~~~giis~~~y~~i~~~~~l 45 (181)
T PF04973_consen 2 WLELIASILGLLCVILAAKGN---------IWNWPFGIISSLLYAYIFYQAGL 45 (181)
T ss_pred HHHHHHHHHHHHHHHHHHhHh---------HHHHHHHHHHHHHHHHHHHHhhh
Confidence 456666677777766666522 23555666666666655554444
No 152
>PF06570 DUF1129: Protein of unknown function (DUF1129); InterPro: IPR009214 There are currently no experimental data for members of this group or their homologues. However, these proteins contain predicted integral membrane proteins (with several transmembrane segments).
Probab=22.03 E-value=5.2e+02 Score=22.32 Aligned_cols=11 Identities=9% Similarity=0.335 Sum_probs=4.9
Q ss_pred HHHHHHHHHHH
Q 018398 335 YTSIFGSAISY 345 (356)
Q Consensus 335 ~lgi~~s~l~~ 345 (356)
.+|++..++-+
T Consensus 185 iig~i~~~~~~ 195 (206)
T PF06570_consen 185 IIGVIAFALRF 195 (206)
T ss_pred HHHHHHHHHHH
Confidence 45544444443
No 153
>CHL00196 psbY photosystem II protein Y; Provisional
Probab=21.74 E-value=1.3e+02 Score=18.41 Aligned_cols=19 Identities=26% Similarity=-0.118 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 018398 264 GEWWMLLAAQSMAVGTVMV 282 (356)
Q Consensus 264 G~llaLlaa~~~a~~~v~~ 282 (356)
=.++-++.|.+|++|++.-
T Consensus 7 iVl~Pil~A~~Wa~fNIg~ 25 (36)
T CHL00196 7 VIAAPVLAAASWALFNIGR 25 (36)
T ss_pred HHHHHHHHHHHHHHHHhHH
Confidence 3567788999999999874
No 154
>PF04632 FUSC: Fusaric acid resistance protein family; InterPro: IPR006726 This entry represents the p-hydroxybenzoic acid efflux pump subunit AaeB (pHBA efflux pump protein B) whose substrates are p-hydroxybenzoic acid (pHBA), 6-hydroxy-2-naphthoic and 2-hydroxycinnamate. It could function as a metabolic relief valve, allowing to eliminate certain compounds when they accumulate to high levels in the cell []. This family also includes fusaric acid resistance proteins [], which are likely to be membrane transporter proteins, and uncharacterised transporter YdhK.; GO: 0006810 transport, 0005886 plasma membrane
Probab=21.33 E-value=9e+02 Score=24.80 Aligned_cols=51 Identities=16% Similarity=0.041 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhccChhHHHHHHhhHHHHHHHHHHHHhC
Q 018398 175 NAWVSIFLFALVDASCFQGFLAQGLQRTSAGLGSVIIDSQPLSVAVLAALLFG 227 (356)
Q Consensus 175 ~~~~~~~~~g~~~~~~~~~~~~~al~~~~~~~a~~i~~l~pv~~~il~~~~l~ 227 (356)
+.....+.-.+++...+..+.++-+-+++. ...+...+.|++. +.++.+-+
T Consensus 387 ~~~~~~~~G~l~~~~~a~~~~~~vlP~~~~-f~~L~l~l~~~l~-~~~~~~~~ 437 (650)
T PF04632_consen 387 PALRLFLIGALLGAVLAFLYLFFVLPHLDG-FPLLALVLAPFLF-LGGLLMAR 437 (650)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhccCc-HHHHHHHHHHHHH-HHHHHHcC
Confidence 334444444445555566666666666666 4445555544443 33434433
No 155
>PF11833 DUF3353: Protein of unknown function (DUF3353); InterPro: IPR021788 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 205 to 258 amino acids in length.
Probab=21.05 E-value=5.5e+02 Score=22.20 Aligned_cols=44 Identities=14% Similarity=0.011 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHHHHhhhccCCChHHHHHHHHHHHHHHHHHHHH
Q 018398 267 WMLLAAQSMAVGTVMVRWVSKYSDPVMATGWHMVIGGLPLMVISV 311 (356)
Q Consensus 267 laLlaa~~~a~~~v~~r~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 311 (356)
+.|..+++..+|.. .||-.+-............+|.++...+..
T Consensus 119 l~Lal~~~~~iyfl-~~K~~~~~rA~~~~~~~L~~G~~lGs~l~~ 162 (194)
T PF11833_consen 119 LQLALGLGACIYFL-NRKERKLGRAFLWTLGGLVVGLILGSLLAS 162 (194)
T ss_pred hHHHHHHHHHHHHH-HHhcchHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33455555556644 454322222333333333444444444443
No 156
>PRK10213 nepI ribonucleoside transporter; Reviewed
Probab=21.01 E-value=7.1e+02 Score=23.53 Aligned_cols=48 Identities=10% Similarity=-0.009 Sum_probs=25.9
Q ss_pred cChhHHHHHHhhHHHHHHHHHHHH--hCCCCcHHHHHHHHHHHHHHHHhh
Q 018398 202 TSAGLGSVIIDSQPLSVAVLAALL--FGESIGLVGAGGLVLGVIGLLLLE 249 (356)
Q Consensus 202 ~~~~~a~~i~~l~pv~~~il~~~~--l~e~~~~~~~~g~~l~~~Gv~ll~ 249 (356)
.+.++...+.....+...+...+. +-||+++++.+-....+.++..+.
T Consensus 52 ~s~~~~g~~~~~~~~~~~~~~~~~g~l~Dr~grr~~~~~~~~~~~~~~~~ 101 (394)
T PRK10213 52 ISEGVAGQSVTVTAFVAMFASLFITQTIQATDRRYVVILFAVLLTLSCLL 101 (394)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcHHHHHHHHHHHHHHHHH
Confidence 455555555444444444333222 357888888766655555554443
No 157
>PF05366 Sarcolipin: Sarcolipin; InterPro: IPR008028 Sarcolipin is a 31 amino acid integral membrane protein that regulates Ca-ATPase activity in skeletal muscle [].; GO: 0030234 enzyme regulator activity, 0016020 membrane; PDB: 1JDM_A.
Probab=20.65 E-value=1.7e+02 Score=16.69 Aligned_cols=19 Identities=21% Similarity=0.107 Sum_probs=14.6
Q ss_pred HHHhhHHHHHHHHHHHHhC
Q 018398 209 VIIDSQPLSVAVLAALLFG 227 (356)
Q Consensus 209 ~i~~l~pv~~~il~~~~l~ 227 (356)
.++++..++++++.|++.+
T Consensus 9 ~lnftvvlitvilmwllvr 27 (31)
T PF05366_consen 9 FLNFTVVLITVILMWLLVR 27 (31)
T ss_dssp HHHHHHHHHHHHHHHHHTT
T ss_pred HHhhhHHHHHHHHHHHHHH
Confidence 4677888888888887754
No 158
>PF06946 Phage_holin_5: Phage holin; InterPro: IPR009708 This entry represents the Bacteriophage A118, holin protein. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This protein family represent one of a large number of mutually dissimilar families of phage holins. It is thought that the temporal precision of holin-mediated lysis may occur through the build-up of a holin oligomer which causes the lysis [].
Probab=20.60 E-value=3.8e+02 Score=20.21 Aligned_cols=24 Identities=25% Similarity=0.116 Sum_probs=13.8
Q ss_pred HHhCCCCcHHHHHHHHHHHHHHHH
Q 018398 224 LLFGESIGLVGAGGLVLGVIGLLL 247 (356)
Q Consensus 224 ~~l~e~~~~~~~~g~~l~~~Gv~l 247 (356)
.+-+-+.-+.+|+-.+..++|+++
T Consensus 24 ~IkkT~~v~~K~iPlIs~viGilL 47 (93)
T PF06946_consen 24 AIKKTKVVPNKWIPLISVVIGILL 47 (93)
T ss_pred HHHHhccCCcchhhHHHHHHHHHH
Confidence 444444445666666666666655
No 159
>TIGR02230 ATPase_gene1 F0F1-ATPase subunit, putative. This model represents a protein found encoded in F1F0-ATPase operons in several genomes, including Methanosarcina barkeri (archaeal) and Chlorobium tepidum (bacterial). It is a small protein (about 100 amino acids) with long hydrophic stretches and is presumed to be a subunit of the enzyme.
Probab=20.24 E-value=1.8e+02 Score=22.32 Aligned_cols=33 Identities=12% Similarity=0.155 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHH
Q 018398 214 QPLSVAVLAALLFGESIGLVGAGGLVLGVIGLL 246 (356)
Q Consensus 214 ~pv~~~il~~~~l~e~~~~~~~~g~~l~~~Gv~ 246 (356)
.|++.-++.-..++|++.-.-+.-+.+.++|++
T Consensus 54 ~pil~G~~lG~WLD~~~~t~~~~tl~~lllGv~ 86 (100)
T TIGR02230 54 IPTLLGVAVGIWLDRHYPSPFSWTLTMLIVGVV 86 (100)
T ss_pred HHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHHH
Confidence 344444444467788776444555555555543
No 160
>TIGR00847 ccoS cytochrome oxidase maturation protein, cbb3-type. CcoS from Rhodobacter capsulatus has been shown essential for incorporation of redox-active prosthetic groups (heme, Cu) into cytochrome cbb(3) oxidase. FixS of Bradyrhizobium japonicum appears to have the same function. Members of this family are found so far in organisms with a cbb3-type cytochrome oxidase, including Neisseria meningitidis, Helicobacter pylori, Campylobacter jejuni, Caulobacter crescentus, Bradyrhizobium japonicum, and Rhodobacter capsulatus.
Probab=20.10 E-value=2.2e+02 Score=18.83 Aligned_cols=25 Identities=16% Similarity=0.319 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhccC
Q 018398 331 LALLYTSIFGSAISYGVYFYSATKG 355 (356)
Q Consensus 331 ~~~~~lgi~~s~l~~~l~~~al~~~ 355 (356)
..++-++++-.+++...+.+|+|++
T Consensus 5 ~~LIpiSl~l~~~~l~~f~Wavk~G 29 (51)
T TIGR00847 5 TILIPISLLLGGVGLVAFLWSLKSG 29 (51)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHccC
Confidence 3445566666677777888888875
Done!