Query 018398
Match_columns 356
No_of_seqs 265 out of 1806
Neff 8.8
Searched_HMMs 29240
Date Mon Mar 25 14:38:26 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018398.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/018398hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3b5d_A Multidrug transporter E 99.0 1.5E-08 5.2E-13 78.7 14.4 102 117-252 3-105 (110)
2 2i68_A Protein EMRE; transmemb 98.9 3E-09 1E-13 85.7 8.3 102 117-252 3-105 (137)
3 3b9w_A Ammonium transporter fa 20.6 5.1E+02 0.017 24.0 15.3 129 176-311 175-313 (407)
4 4dve_A Biotin transporter BIOY 16.8 4.4E+02 0.015 21.6 8.7 61 212-273 49-110 (198)
5 4aps_A DI-OR tripeptide H+ sym 16.3 6E+02 0.02 23.0 18.2 47 201-247 50-99 (491)
6 2i68_A Protein EMRE; transmemb 13.6 4.4E+02 0.015 20.1 6.6 29 269-297 34-62 (137)
7 3arc_T Photosystem II reaction 10.1 2.7E+02 0.0094 15.7 3.6 13 220-232 17-29 (32)
8 2lsj_B DNA polymerase kappa; R 11.2 79 0.0027 16.8 0.0 18 21-38 4-21 (26)
9 1rh5_C Secbeta; protein transl 7.8 3.5E+02 0.012 17.1 2.9 21 229-249 27-47 (53)
10 2jp3_A FXYD domain-containing 7.4 2.6E+02 0.009 18.6 2.2 17 235-251 23-39 (67)
No 1
>3b5d_A Multidrug transporter EMRE; helical membrane protein, multidrug resistance transporter, SMR, antiport, inner membrane, transmembrane; HET: P4P; 3.80A {Escherichia coli K12} PDB: 3b61_A 3b62_A*
Probab=98.99 E-value=1.5e-08 Score=78.70 Aligned_cols=102 Identities=18% Similarity=0.170 Sum_probs=84.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhccCCCHHHHHHHHHHHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHHHHHHHHHHH
Q 018398 117 EWAVLVSPFFFWGTAMVAMKEVLPKAGTFFVAAFRLIPAGLLLITFASSQGRKLPSGFNAWVSIFLFALVDASCFQGFLA 196 (356)
Q Consensus 117 g~l~ll~aa~~~~~~~~~~k~~~~~~~p~~~~~~r~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 196 (356)
.+++++++.++-.......|...+ .. +.+. .+.+.++++.++.++.
T Consensus 3 ~~l~l~~a~~~e~~~~~~lK~s~~-~~-------------------------------~~~~--~~~~~~~~~~~~~~~~ 48 (110)
T 3b5d_A 3 PYIYLGGAILAEVIGTTLMKFSEG-FT-------------------------------RLWP--SVGTIICYCASFWLLA 48 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccC-cc-------------------------------hHHH--HHHHHHHHHHHHHHHH
Confidence 467778888888888888887421 10 1122 2466777788999999
Q ss_pred HHhhccChhHHHHH-HhhHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHhhccC
Q 018398 197 QGLQRTSAGLGSVI-IDSQPLSVAVLAALLFGESIGLVGAGGLVLGVIGLLLLEAPA 252 (356)
Q Consensus 197 ~al~~~~~~~a~~i-~~l~pv~~~il~~~~l~e~~~~~~~~g~~l~~~Gv~ll~~~~ 252 (356)
+++++.|.+.+..+ ..+.|+++++++++++||++++.+++|++++++|++++...+
T Consensus 49 ~al~~~p~s~ay~i~~g~~~v~~~l~~~~~~~E~~s~~~~~Gi~lIi~Gv~~l~~~~ 105 (110)
T 3b5d_A 49 QTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLIINLLS 105 (110)
T ss_pred HHHHhCChhhHHHHHhhHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcCC
Confidence 99999999999888 899999999999999999999999999999999999997744
No 2
>2i68_A Protein EMRE; transmembrane protein, small-multidrug resistance, transporter, homodimer, dual topology, transport protein; NMR {Escherichia coli}
Probab=98.92 E-value=3e-09 Score=85.73 Aligned_cols=102 Identities=18% Similarity=0.163 Sum_probs=68.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhccCCCHHHHHHHHHHHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHHHHHHHHHHH
Q 018398 117 EWAVLVSPFFFWGTAMVAMKEVLPKAGTFFVAAFRLIPAGLLLITFASSQGRKLPSGFNAWVSIFLFALVDASCFQGFLA 196 (356)
Q Consensus 117 g~l~ll~aa~~~~~~~~~~k~~~~~~~p~~~~~~r~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 196 (356)
.+++++++.++-.......|.... . . +.+ ..+.++++++++++++.
T Consensus 3 ~~l~Ll~ail~ev~~~~~lK~s~g-~-------~------------------------~~~--~~~l~i~~~~ls~~l~~ 48 (137)
T 2i68_A 3 PYIYLGGAILAEVIGTTLMKFSEG-F-------T------------------------RLW--PSVGTIICYCASFWLLA 48 (137)
T ss_dssp -CHHHHHHHHHHHHHHHHC----------------------------------------------CHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcc-c-------c------------------------hHH--HHHHHHHHHHHHHHHHH
Confidence 356677777777777777776320 0 0 011 12567777889999999
Q ss_pred HHhhccChhHHHHH-HhhHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHhhccC
Q 018398 197 QGLQRTSAGLGSVI-IDSQPLSVAVLAALLFGESIGLVGAGGLVLGVIGLLLLEAPA 252 (356)
Q Consensus 197 ~al~~~~~~~a~~i-~~l~pv~~~il~~~~l~e~~~~~~~~g~~l~~~Gv~ll~~~~ 252 (356)
+++++.+++.+..+ .++.|+++++++++++||++++.+++|++++++|++++...+
T Consensus 49 ~alk~i~~s~ay~iw~~l~pv~~~l~g~l~lgE~ls~~~~~Gi~LIi~GV~ll~~~~ 105 (137)
T 2i68_A 49 QTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLIINLLS 105 (137)
T ss_dssp HHHC-----CHHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHC-
T ss_pred HHHHhCChhHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcCC
Confidence 99999999999988 899999999999999999999999999999999999998754
No 3
>3b9w_A Ammonium transporter family; membrane protein, ammonia transport, rhesus protein, transpo protein; HET: BOG; 1.30A {Nitrosomonas europaea} PDB: 3bhs_A 3b9y_A* 3b9z_A*
Probab=20.59 E-value=5.1e+02 Score=23.95 Aligned_cols=129 Identities=14% Similarity=0.004 Sum_probs=52.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccChhHHHHHHhhHHHHHHHHHHH-----HhCCCCcHHHHHHHHHHHHHHHHhhc
Q 018398 176 AWVSIFLFALVDASCFQGFLAQGLQRTSAGLGSVIIDSQPLSVAVLAAL-----LFGESIGLVGAGGLVLGVIGLLLLEA 250 (356)
Q Consensus 176 ~~~~~~~~g~~~~~~~~~~~~~al~~~~~~~a~~i~~l~pv~~~il~~~-----~l~e~~~~~~~~g~~l~~~Gv~ll~~ 250 (356)
.-..+..+|.+-.-.++..+.-++.......-++++...-.....+.++ +.+.|++.....-. +++|.+-+..
T Consensus 175 hn~~~~~lGt~lLW~GWfGFN~Gl~~~~~~~~a~~NT~lAaaag~l~~~~~~~~~~~gK~~~~~~~nG--~LAGLVAITa 252 (407)
T 3b9w_A 175 TSDRFSMLGSMVLWLFWPSFATAIVPFEQMPQTIVNTLLALCGATLATYFLSALFHKGKASIVDMANA--ALAGGVAIGS 252 (407)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTSCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCHHHHHHH--TTHHHHHHTT
T ss_pred CCHHHHHHHHHHHHHHHHhhhhhhccchhhHHHHHHhHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHh--hhhhhheecc
Confidence 3344455555544555666666643222222223333333333333333 34455655443322 2344444443
Q ss_pred cCCCCCCCchhhHHHHHHHHHHHHHHHHHHH-----HhhhccCCChHHHHHHHHHHHHHHHHHHHH
Q 018398 251 PAFDESNSSLWGSGEWWMLLAAQSMAVGTVM-----VRWVSKYSDPVMATGWHMVIGGLPLMVISV 311 (356)
Q Consensus 251 ~~~~~~~~~~~~~G~llaLlaa~~~a~~~v~-----~r~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 311 (356)
.- +..+ .....+..+++++..-....+ .+|+ +-.|+..........|..-.+...+
T Consensus 253 ~~---~~v~-p~~A~iIG~iaG~i~~~~~~~l~~~l~~~l-~iDD~l~a~~vHgv~Gi~G~l~~gl 313 (407)
T 3b9w_A 253 VC---NIVG-PVGAFVIGLLGGAISVVGFVFIQPMLESKA-KTIDTCGVHNLHGLPGLLGGFSAIL 313 (407)
T ss_dssp TT---TTSC-HHHHHHHHHHHHHHHHHHHHTHHHHHHHHS-CCCCTTCHHHHTTHHHHHHHHHHHH
T ss_pred CC---CCCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCCCCCCCeecchHHHHHHHHHHHH
Confidence 22 1122 223445555555544333322 2222 3345555555554444443333333
No 4
>4dve_A Biotin transporter BIOY; ECF-transport, ligand-binding domain, biotin binding, membra transport protein; HET: BTN BNG; 2.09A {Lactococcus lactis subsp}
Probab=16.75 E-value=4.4e+02 Score=21.63 Aligned_cols=61 Identities=20% Similarity=0.122 Sum_probs=29.3
Q ss_pred hhHHHHHHHHHHHHhCCCCc-HHHHHHHHHHHHHHHHhhccCCCCCCCchhhHHHHHHHHHHH
Q 018398 212 DSQPLSVAVLAALLFGESIG-LVGAGGLVLGVIGLLLLEAPAFDESNSSLWGSGEWWMLLAAQ 273 (356)
Q Consensus 212 ~l~pv~~~il~~~~l~e~~~-~~~~~g~~l~~~Gv~ll~~~~~~~~~~~~~~~G~llaLlaa~ 273 (356)
.++.+.+.+.+ .+++-|.. ....+-++++.+|+=+.......-........|++++..-+.
T Consensus 49 TlQtl~V~LaG-~~LG~r~G~lsv~lYlllG~~GlPVFagg~gG~~~l~gPTgGYLiGF~~aA 110 (198)
T 4dve_A 49 ILQNMGIMMAG-GLLGPKYGTISVGAFLALALIGLPVLTGGNGGAASFLGPSGGYRIAWLFTP 110 (198)
T ss_dssp CSTHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHTCCCBTTTBCCSGGGGSTTHHHHHHHHHHH
T ss_pred cHHHHHHHHHH-HHHChhHHHHHHHHHHHHHHHcCccccCCCCchhHHhcchhHHHHHHHHHH
Confidence 34555665555 45554443 334444555666654444432111111122357777766554
No 5
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=16.34 E-value=6e+02 Score=22.96 Aligned_cols=47 Identities=15% Similarity=-0.056 Sum_probs=25.5
Q ss_pred ccChhHHHHHHhhHHHHHHHHHHHH--hCCC-CcHHHHHHHHHHHHHHHH
Q 018398 201 RTSAGLGSVIIDSQPLSVAVLAALL--FGES-IGLVGAGGLVLGVIGLLL 247 (356)
Q Consensus 201 ~~~~~~a~~i~~l~pv~~~il~~~~--l~e~-~~~~~~~g~~l~~~Gv~l 247 (356)
..+..+++.+.....+...+...+. +-|| +++++.+-....+.++..
T Consensus 50 ~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~g~r~~~~~~~~~~~~~~ 99 (491)
T 4aps_A 50 HITRATAASIMAIYASMVYLSGTIGGFVADRIIGARPAVFWGGVLIMLGH 99 (491)
T ss_dssp CSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHH
Confidence 4566667666665555544444322 3477 677776554444444433
No 6
>2i68_A Protein EMRE; transmembrane protein, small-multidrug resistance, transporter, homodimer, dual topology, transport protein; NMR {Escherichia coli}
Probab=13.63 E-value=4.4e+02 Score=20.09 Aligned_cols=29 Identities=7% Similarity=-0.066 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHHhhhccCCChHHHHHH
Q 018398 269 LLAAQSMAVGTVMVRWVSKYSDPVMATGW 297 (356)
Q Consensus 269 Llaa~~~a~~~v~~r~~~~~~~~~~~~~~ 297 (356)
+++.+++++++++.-+..++.+.-.....
T Consensus 34 ~l~i~~~~ls~~l~~~alk~i~~s~ay~i 62 (137)
T 2i68_A 34 VGTIICYCASFWLLAQTLAYIPTGIAYAI 62 (137)
T ss_dssp CHHHHHHHHHHHHHHHHHC-----CHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhCChhHHHHH
Confidence 44555666666665555555565544444
No 7
>3arc_T Photosystem II reaction center protein T; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 1s5l_T* 2axt_T* 3bz1_T* 3bz2_T* 3kzi_T* 3prq_T* 3prr_T* 3a0b_T* 3a0h_T*
Probab=10.13 E-value=2.7e+02 Score=15.65 Aligned_cols=13 Identities=23% Similarity=0.416 Sum_probs=8.2
Q ss_pred HHHHHHhCCCCcH
Q 018398 220 VLAALLFGESIGL 232 (356)
Q Consensus 220 il~~~~l~e~~~~ 232 (356)
++-.++++|++..
T Consensus 17 iFFAI~FRePPri 29 (32)
T 3arc_T 17 FFFAIFFREPPRI 29 (32)
T ss_dssp HHHHHHTSCCCCC
T ss_pred HHHhhhhcCCCCC
Confidence 3444778888753
No 8
>2lsj_B DNA polymerase kappa; REV1, RIR, POL kappa, translesion synthesis, TLS, CTD, prote binding-protein binding complex; HET: DNA; NMR {Mus musculus}
Probab=11.23 E-value=79 Score=16.81 Aligned_cols=18 Identities=28% Similarity=0.165 Sum_probs=11.3
Q ss_pred cccccccccccccccccc
Q 018398 21 SSLSSYSNKKLSSNHVAH 38 (356)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~ 38 (356)
|+..||=+|||+.-...+
T Consensus 4 S~K~SFFdKKRser~~n~ 21 (26)
T 2lsj_B 4 SHKKSFFDKKRSERISNC 21 (26)
Confidence 455677788877644443
No 9
>1rh5_C Secbeta; protein translocation, SECY, membrane protein, protein channels, protein transport; 3.20A {Methanocaldococcus jannaschii} SCOP: f.23.29.1 PDB: 1rhz_C 2yxq_C 2yxr_C 3kcr_C 3dkn_C 3bo1_C 3bo0_C
Probab=7.79 E-value=3.5e+02 Score=17.12 Aligned_cols=21 Identities=5% Similarity=0.003 Sum_probs=16.6
Q ss_pred CCcHHHHHHHHHHHHHHHHhh
Q 018398 229 SIGLVGAGGLVLGVIGLLLLE 249 (356)
Q Consensus 229 ~~~~~~~~g~~l~~~Gv~ll~ 249 (356)
|+++..++++.++++..+++.
T Consensus 27 Ki~P~~Vl~~si~~i~~V~~L 47 (53)
T 1rh5_C 27 RVKPEHVIGVTVAFVIIEAIL 47 (53)
T ss_dssp CCCHHHHHHHHHHHHHHHHHH
T ss_pred ccCCeehhhhHHHHHHHHHHH
Confidence 678888888888888776654
No 10
>2jp3_A FXYD domain-containing ION transport regulator 4; protein, transcription; NMR {Rattus norvegicus}
Probab=7.35 E-value=2.6e+02 Score=18.64 Aligned_cols=17 Identities=24% Similarity=0.198 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHHhhcc
Q 018398 235 AGGLVLGVIGLLLLEAP 251 (356)
Q Consensus 235 ~~g~~l~~~Gv~ll~~~ 251 (356)
+++.++.++|++++...
T Consensus 23 ifA~vLfi~GI~iilS~ 39 (67)
T 2jp3_A 23 IFGGLLCIAGIALALSG 39 (67)
T ss_dssp HHHHHHHHHHHHHHHTT
T ss_pred hhHHHHHHHHHHHHHcC
Confidence 45667777787777654
Done!